Query 001123
Match_columns 1149
No_of_seqs 525 out of 2579
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 16:27:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001123.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001123hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0566 Inositol-1,4,5-triphos 100.0 3.5E-87 7.6E-92 790.0 25.2 340 516-954 506-853 (1080)
2 PLN03191 Type I inositol-1,4,5 100.0 7.8E-78 1.7E-82 700.6 28.9 250 618-946 349-605 (621)
3 smart00128 IPPc Inositol polyp 100.0 2.4E-74 5.3E-79 653.3 27.4 300 551-938 2-310 (310)
4 COG5411 Phosphatidylinositol 5 100.0 1.6E-66 3.6E-71 580.1 18.7 331 528-951 6-345 (460)
5 KOG0271 Notchless-like WD40 re 100.0 1.1E-39 2.4E-44 355.6 27.6 325 142-524 127-479 (480)
6 KOG0271 Notchless-like WD40 re 100.0 3.1E-36 6.7E-41 328.8 28.1 301 188-566 111-466 (480)
7 KOG0272 U4/U6 small nuclear ri 100.0 2.1E-35 4.6E-40 326.5 21.4 266 191-524 175-458 (459)
8 KOG0263 Transcription initiati 100.0 1.7E-32 3.6E-37 323.5 20.5 242 191-528 378-651 (707)
9 KOG0281 Beta-TrCP (transducin 100.0 8.1E-33 1.8E-37 298.4 15.9 266 137-530 202-481 (499)
10 KOG0319 WD40-repeat-containing 100.0 7.2E-31 1.6E-35 306.3 26.3 362 134-524 107-617 (775)
11 KOG0295 WD40 repeat-containing 100.0 1.9E-30 4E-35 283.1 26.4 333 56-524 57-404 (406)
12 KOG0286 G-protein beta subunit 100.0 2.6E-29 5.7E-34 267.7 29.9 265 142-524 67-343 (343)
13 KOG0281 Beta-TrCP (transducin 100.0 7.6E-32 1.6E-36 290.9 10.4 231 191-527 197-429 (499)
14 KOG0272 U4/U6 small nuclear ri 100.0 1.2E-29 2.6E-34 281.1 20.2 255 142-485 187-458 (459)
15 KOG0319 WD40-repeat-containing 100.0 1.3E-28 2.9E-33 287.5 29.6 110 137-273 69-182 (775)
16 KOG0315 G-protein beta subunit 100.0 2.8E-28 6.2E-33 254.8 25.8 258 147-527 16-289 (311)
17 KOG0279 G protein beta subunit 100.0 3.2E-27 6.9E-32 250.8 30.7 277 187-526 10-313 (315)
18 KOG0263 Transcription initiati 100.0 1.1E-27 2.4E-32 282.9 27.3 271 113-487 327-649 (707)
19 KOG0295 WD40 repeat-containing 100.0 6.6E-28 1.4E-32 263.3 21.4 233 191-527 108-365 (406)
20 KOG0273 Beta-transducin family 100.0 9.4E-27 2E-31 260.8 27.7 256 191-565 235-507 (524)
21 KOG0266 WD40 repeat-containing 100.0 1.3E-26 2.8E-31 277.8 30.7 263 142-525 171-453 (456)
22 KOG0306 WD40-repeat-containing 100.0 2.7E-26 5.8E-31 267.9 31.9 365 134-526 67-664 (888)
23 KOG0265 U5 snRNP-specific prot 100.0 5.6E-27 1.2E-31 251.0 24.1 264 191-522 47-334 (338)
24 KOG0274 Cdc4 and related F-box 100.0 9.3E-27 2E-31 280.3 27.3 269 139-534 215-490 (537)
25 KOG0318 WD40 repeat stress pro 99.9 4.9E-25 1.1E-29 249.6 35.6 351 130-526 188-602 (603)
26 PTZ00312 inositol-1,4,5-tripho 99.9 1.2E-27 2.6E-32 255.4 11.4 186 674-930 65-356 (356)
27 KOG0315 G-protein beta subunit 99.9 2.2E-25 4.8E-30 233.3 27.4 265 125-506 23-308 (311)
28 KOG0313 Microtubule binding pr 99.9 8E-26 1.7E-30 248.1 23.7 298 122-524 95-416 (423)
29 KOG0291 WD40-repeat-containing 99.9 4.4E-25 9.6E-30 257.9 30.7 288 101-526 290-612 (893)
30 KOG0266 WD40 repeat-containing 99.9 2.8E-25 6.2E-30 266.3 29.8 237 191-529 159-412 (456)
31 KOG0313 Microtubule binding pr 99.9 7.8E-26 1.7E-30 248.2 22.1 283 188-563 103-401 (423)
32 KOG0285 Pleiotropic regulator 99.9 1.8E-25 4E-30 243.1 24.0 269 188-525 147-438 (460)
33 cd00200 WD40 WD40 domain, foun 99.9 4.7E-24 1E-28 230.4 33.9 266 191-524 9-289 (289)
34 KOG0291 WD40-repeat-containing 99.9 1.8E-23 3.9E-28 244.6 37.6 365 142-527 107-509 (893)
35 KOG0274 Cdc4 and related F-box 99.9 4.1E-25 9E-30 266.1 23.8 233 191-532 208-447 (537)
36 KOG0318 WD40 repeat stress pro 99.9 7.4E-23 1.6E-27 232.0 39.5 333 191-531 190-565 (603)
37 KOG0284 Polyadenylation factor 99.9 1.6E-25 3.5E-30 247.4 17.3 264 142-530 108-384 (464)
38 PLN00181 protein SPA1-RELATED; 99.9 1.7E-23 3.6E-28 267.6 38.0 273 191-525 483-792 (793)
39 KOG0279 G protein beta subunit 99.9 5E-24 1.1E-28 226.6 27.3 257 148-487 35-313 (315)
40 KOG0296 Angio-associated migra 99.9 8.9E-24 1.9E-28 231.3 28.0 293 188-525 62-397 (399)
41 KOG0308 Conserved WD40 repeat- 99.9 3.9E-25 8.5E-30 255.3 17.9 279 196-562 29-320 (735)
42 KOG0286 G-protein beta subunit 99.9 1.6E-23 3.4E-28 223.8 28.7 242 188-527 51-304 (343)
43 KOG0293 WD40 repeat-containing 99.9 3.3E-24 7E-29 236.8 23.1 272 191-526 224-513 (519)
44 KOG0285 Pleiotropic regulator 99.9 7.9E-24 1.7E-28 230.4 24.6 267 131-486 150-438 (460)
45 KOG0645 WD40 repeat protein [G 99.9 6.3E-23 1.4E-27 217.4 29.7 273 135-526 17-311 (312)
46 KOG0282 mRNA splicing factor [ 99.9 1.4E-24 3E-29 244.6 13.7 270 187-524 209-503 (503)
47 KOG0292 Vesicle coat complex C 99.9 6.4E-23 1.4E-27 242.3 25.6 300 191-531 9-326 (1202)
48 KOG0565 Inositol polyphosphate 99.9 2.3E-24 4.9E-29 219.3 11.5 141 632-833 2-145 (145)
49 KOG0284 Polyadenylation factor 99.9 6.7E-24 1.5E-28 234.6 14.8 238 191-532 96-343 (464)
50 KOG0276 Vesicle coat complex C 99.9 3.4E-22 7.3E-27 229.7 26.3 233 191-527 13-258 (794)
51 KOG0316 Conserved WD40 repeat- 99.9 4.9E-22 1.1E-26 206.8 24.7 263 191-524 17-297 (307)
52 KOG0301 Phospholipase A2-activ 99.9 3.5E-22 7.7E-27 232.7 25.4 267 134-528 16-290 (745)
53 KOG0275 Conserved WD40 repeat- 99.9 6.2E-23 1.3E-27 220.3 17.5 275 191-524 213-507 (508)
54 KOG0645 WD40 repeat protein [G 99.9 3.1E-21 6.6E-26 204.7 29.9 266 191-561 14-290 (312)
55 KOG0276 Vesicle coat complex C 99.9 2.7E-22 5.8E-27 230.6 23.5 257 149-530 33-302 (794)
56 KOG0306 WD40-repeat-containing 99.9 1.3E-21 2.7E-26 229.2 28.8 328 142-527 33-485 (888)
57 KOG0273 Beta-transducin family 99.9 4.2E-21 9.2E-26 215.7 29.3 277 133-526 236-523 (524)
58 cd00200 WD40 WD40 domain, foun 99.9 2.1E-20 4.5E-25 201.9 34.1 264 134-485 11-289 (289)
59 PLN00181 protein SPA1-RELATED; 99.9 1.1E-20 2.3E-25 241.9 36.4 272 132-486 483-792 (793)
60 KOG0265 U5 snRNP-specific prot 99.9 7E-21 1.5E-25 204.4 27.2 273 132-484 47-335 (338)
61 KOG0300 WD40 repeat-containing 99.9 2E-21 4.4E-26 208.4 20.4 266 148-529 167-479 (481)
62 PTZ00420 coronin; Provisional 99.9 3E-20 6.4E-25 225.0 31.1 225 191-508 74-316 (568)
63 PTZ00421 coronin; Provisional 99.9 2.5E-20 5.5E-25 224.2 29.9 247 193-528 22-292 (493)
64 KOG0288 WD40 repeat protein Ti 99.9 1.3E-21 2.8E-26 217.0 17.0 255 143-524 188-459 (459)
65 KOG0296 Angio-associated migra 99.9 3.5E-20 7.5E-25 203.4 27.5 285 134-486 66-397 (399)
66 PTZ00421 coronin; Provisional 99.9 1.3E-19 2.9E-24 217.9 34.8 222 191-508 75-313 (493)
67 KOG0301 Phospholipase A2-activ 99.9 4.1E-21 8.8E-26 223.9 20.8 229 191-526 14-249 (745)
68 KOG0292 Vesicle coat complex C 99.9 3E-20 6.6E-25 220.0 26.9 277 150-487 30-321 (1202)
69 KOG0278 Serine/threonine kinas 99.9 7.8E-21 1.7E-25 199.2 18.0 236 188-529 55-300 (334)
70 KOG0640 mRNA cleavage stimulat 99.9 1.7E-20 3.6E-25 201.4 20.6 281 188-524 110-424 (430)
71 KOG0316 Conserved WD40 repeat- 99.9 2.1E-20 4.5E-25 194.8 20.6 231 233-526 9-257 (307)
72 PTZ00420 coronin; Provisional 99.9 2E-19 4.4E-24 217.8 31.6 222 208-527 49-294 (568)
73 KOG0308 Conserved WD40 repeat- 99.9 7.6E-21 1.6E-25 220.1 18.2 277 143-526 38-327 (735)
74 KOG0283 WD40 repeat-containing 99.8 4.6E-20 1E-24 220.5 22.5 242 191-530 267-580 (712)
75 KOG0294 WD40 repeat-containing 99.8 1.4E-19 3E-24 195.6 23.2 233 184-526 37-281 (362)
76 KOG0278 Serine/threonine kinas 99.8 1.7E-20 3.8E-25 196.6 14.9 239 125-489 42-300 (334)
77 KOG0268 Sof1-like rRNA process 99.8 2.1E-20 4.6E-25 204.5 15.5 267 181-527 55-346 (433)
78 KOG0299 U3 snoRNP-associated p 99.8 3.9E-19 8.4E-24 200.0 25.2 239 191-527 142-411 (479)
79 KOG0277 Peroxisomal targeting 99.8 1.7E-19 3.6E-24 190.0 20.6 264 139-524 25-307 (311)
80 KOG0299 U3 snoRNP-associated p 99.8 7.7E-19 1.7E-23 197.6 27.1 268 139-518 151-448 (479)
81 KOG0275 Conserved WD40 repeat- 99.8 2.8E-20 6.1E-25 200.0 15.0 273 141-485 224-507 (508)
82 KOG0641 WD40 repeat protein [G 99.8 5.1E-18 1.1E-22 175.5 29.6 299 126-525 29-348 (350)
83 KOG0294 WD40 repeat-containing 99.8 1.4E-18 3.1E-23 187.8 24.8 238 124-487 34-281 (362)
84 KOG0310 Conserved WD40 repeat- 99.8 6.1E-19 1.3E-23 199.7 21.8 226 191-523 68-306 (487)
85 KOG0282 mRNA splicing factor [ 99.8 3.7E-19 8E-24 201.1 19.4 257 148-485 234-503 (503)
86 KOG0643 Translation initiation 99.8 7E-18 1.5E-22 178.9 25.2 273 191-526 10-317 (327)
87 KOG1446 Histone H3 (Lys4) meth 99.8 3.5E-17 7.6E-22 177.9 31.0 266 191-526 14-303 (311)
88 KOG0305 Anaphase promoting com 99.8 6E-18 1.3E-22 198.3 26.4 260 144-528 190-463 (484)
89 KOG0293 WD40 repeat-containing 99.8 2.2E-18 4.7E-23 191.1 21.3 259 142-487 236-513 (519)
90 KOG1408 WD40 repeat protein [F 99.8 4.2E-17 9.1E-22 189.7 32.0 380 141-526 269-713 (1080)
91 KOG0973 Histone transcription 99.8 6.9E-18 1.5E-22 206.3 24.5 300 191-595 13-360 (942)
92 KOG0289 mRNA splicing factor [ 99.8 2.5E-17 5.4E-22 184.0 26.2 269 191-525 219-505 (506)
93 KOG0288 WD40 repeat protein Ti 99.8 8E-19 1.7E-23 195.0 13.5 257 191-563 175-443 (459)
94 KOG0277 Peroxisomal targeting 99.8 1.2E-17 2.7E-22 176.0 21.5 217 211-530 36-269 (311)
95 KOG0973 Histone transcription 99.8 3.3E-17 7.2E-22 200.4 28.5 294 134-527 15-356 (942)
96 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 1.5E-16 3.2E-21 177.3 30.8 252 148-528 8-281 (300)
97 KOG0300 WD40 repeat-containing 99.8 4E-18 8.6E-23 183.3 17.2 232 191-527 148-387 (481)
98 KOG1407 WD40 repeat protein [F 99.8 5.1E-17 1.1E-21 172.0 24.3 251 191-509 20-283 (313)
99 KOG0647 mRNA export protein (c 99.8 4.4E-17 9.5E-22 175.5 23.9 243 142-473 40-309 (347)
100 KOG0310 Conserved WD40 repeat- 99.8 2.3E-17 4.9E-22 187.1 22.5 221 142-487 79-309 (487)
101 KOG0641 WD40 repeat protein [G 99.8 3.2E-16 6.9E-21 162.3 27.0 245 191-526 32-303 (350)
102 KOG0646 WD40 repeat protein [G 99.8 4.3E-17 9.4E-22 184.0 21.0 200 191-527 81-308 (476)
103 KOG0305 Anaphase promoting com 99.7 6.4E-17 1.4E-21 189.7 21.8 214 149-487 237-461 (484)
104 KOG0321 WD40 repeat-containing 99.7 4.9E-17 1.1E-21 188.6 19.6 303 142-526 63-391 (720)
105 KOG0647 mRNA export protein (c 99.7 3.6E-16 7.8E-21 168.6 24.9 256 191-517 27-315 (347)
106 KOG1539 WD repeat protein [Gen 99.7 1.7E-15 3.6E-20 180.3 31.7 337 143-536 173-616 (910)
107 KOG1036 Mitotic spindle checkp 99.7 8.2E-16 1.8E-20 166.5 26.3 99 142-271 26-125 (323)
108 KOG0772 Uncharacterized conser 99.7 2.1E-16 4.5E-21 179.4 22.6 289 190-524 166-485 (641)
109 KOG0283 WD40 repeat-containing 99.7 1.2E-16 2.7E-21 191.4 21.9 213 236-527 261-533 (712)
110 KOG2445 Nuclear pore complex c 99.7 8.7E-16 1.9E-20 165.9 26.0 253 191-525 13-317 (361)
111 KOG1407 WD40 repeat protein [F 99.7 2.5E-16 5.4E-21 166.9 21.1 238 235-531 14-266 (313)
112 KOG1446 Histone H3 (Lys4) meth 99.7 2.3E-15 5E-20 163.8 29.0 269 131-487 13-303 (311)
113 KOG1063 RNA polymerase II elon 99.7 6E-16 1.3E-20 181.1 25.6 317 188-526 187-648 (764)
114 KOG2096 WD40 repeat protein [G 99.7 2.9E-16 6.3E-21 169.7 20.9 287 191-524 86-400 (420)
115 KOG2048 WD40 repeat protein [G 99.7 3.2E-15 6.9E-20 175.1 30.0 279 134-527 27-320 (691)
116 KOG0264 Nucleosome remodeling 99.7 2.7E-16 5.8E-21 177.6 19.1 249 191-526 124-404 (422)
117 KOG0640 mRNA cleavage stimulat 99.7 1.1E-16 2.5E-21 172.1 15.3 250 233-562 104-383 (430)
118 KOG0639 Transducin-like enhanc 99.7 5.6E-16 1.2E-20 175.0 21.0 278 129-525 416-703 (705)
119 KOG0267 Microtubule severing p 99.7 4.8E-17 1E-21 190.7 10.5 221 191-515 28-257 (825)
120 KOG0646 WD40 repeat protein [G 99.7 9.1E-16 2E-20 173.4 19.4 232 135-467 84-327 (476)
121 KOG1976 Inositol polyphosphate 99.7 3.7E-17 8E-22 175.3 7.3 83 844-933 305-389 (391)
122 KOG2096 WD40 repeat protein [G 99.7 1.2E-15 2.5E-20 165.1 18.8 102 425-526 193-308 (420)
123 KOG0772 Uncharacterized conser 99.7 7.5E-16 1.6E-20 175.0 17.6 211 234-527 160-395 (641)
124 KOG1036 Mitotic spindle checkp 99.7 1.4E-14 3E-19 157.1 25.8 253 191-516 13-294 (323)
125 KOG1539 WD repeat protein [Gen 99.7 2.2E-14 4.7E-19 171.0 29.7 347 149-524 222-646 (910)
126 KOG0642 Cell-cycle nuclear pro 99.7 6.2E-16 1.3E-20 178.0 16.2 267 133-498 295-573 (577)
127 KOG0643 Translation initiation 99.7 8E-15 1.7E-19 155.9 21.9 244 142-447 22-316 (327)
128 KOG0639 Transducin-like enhanc 99.7 1.7E-15 3.7E-20 171.2 17.8 235 192-525 420-662 (705)
129 KOG1332 Vesicle coat complex C 99.7 6E-15 1.3E-19 155.2 20.6 243 142-491 23-292 (299)
130 KOG1332 Vesicle coat complex C 99.7 3.3E-15 7.2E-20 157.1 18.5 251 192-526 12-286 (299)
131 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 1.5E-13 3.3E-18 153.1 32.2 242 142-505 42-297 (300)
132 KOG0302 Ribosome Assembly prot 99.6 5.6E-15 1.2E-19 163.1 18.4 114 414-528 252-380 (440)
133 KOG4283 Transcription-coupled 99.6 3.1E-14 6.7E-19 152.9 23.1 280 188-525 41-364 (397)
134 KOG0267 Microtubule severing p 99.6 3.6E-16 7.8E-21 183.5 7.5 215 204-528 5-228 (825)
135 KOG2106 Uncharacterized conser 99.6 1.1E-12 2.3E-17 149.4 34.8 332 107-524 170-519 (626)
136 KOG1408 WD40 repeat protein [F 99.6 3.5E-14 7.7E-19 165.7 22.3 225 191-487 459-713 (1080)
137 KOG2048 WD40 repeat protein [G 99.6 1.7E-13 3.8E-18 160.7 27.8 236 191-527 25-276 (691)
138 KOG0268 Sof1-like rRNA process 99.6 9.5E-15 2.1E-19 160.6 16.0 255 235-563 60-327 (433)
139 KOG0270 WD40 repeat-containing 99.6 2.5E-14 5.3E-19 161.1 19.4 229 202-532 191-455 (463)
140 KOG0264 Nucleosome remodeling 99.6 1.1E-13 2.4E-18 156.6 22.6 202 191-487 177-404 (422)
141 KOG0649 WD40 repeat protein [G 99.6 2.4E-13 5.3E-18 142.9 23.3 246 192-526 11-274 (325)
142 KOG0269 WD40 repeat-containing 99.6 1.5E-14 3.3E-19 171.2 15.6 227 196-523 92-337 (839)
143 KOG4283 Transcription-coupled 99.6 8.1E-14 1.8E-18 149.7 19.0 240 142-486 113-364 (397)
144 KOG1273 WD40 repeat protein [G 99.6 2.2E-13 4.7E-18 147.7 21.4 273 192-528 24-324 (405)
145 KOG0650 WD40 repeat nucleolar 99.6 1.9E-13 4.1E-18 158.0 22.1 290 191-523 400-732 (733)
146 KOG1274 WD40 repeat protein [G 99.6 6.4E-13 1.4E-17 160.4 27.1 233 191-527 13-263 (933)
147 KOG2445 Nuclear pore complex c 99.5 2.4E-12 5.2E-17 139.6 27.4 271 134-496 15-331 (361)
148 KOG0642 Cell-cycle nuclear pro 99.5 3.2E-14 7E-19 164.1 13.3 248 191-527 294-562 (577)
149 KOG0289 mRNA splicing factor [ 99.5 1.3E-12 2.9E-17 146.6 25.1 257 143-486 232-505 (506)
150 KOG0321 WD40 repeat-containing 99.5 1.6E-13 3.5E-18 159.8 17.0 266 195-530 53-351 (720)
151 KOG0644 Uncharacterized conser 99.5 7E-14 1.5E-18 166.0 12.4 269 191-526 190-468 (1113)
152 KOG0307 Vesicle coat complex C 99.5 1.1E-13 2.4E-18 170.5 13.4 242 193-528 66-329 (1049)
153 KOG1274 WD40 repeat protein [G 99.5 3E-12 6.5E-17 154.7 25.2 249 92-467 26-278 (933)
154 COG2319 FOG: WD40 repeat [Gene 99.5 1.7E-11 3.7E-16 138.5 30.2 236 191-529 65-317 (466)
155 KOG1538 Uncharacterized conser 99.5 1.2E-12 2.6E-17 152.1 20.0 263 192-527 13-294 (1081)
156 COG2319 FOG: WD40 repeat [Gene 99.5 8.1E-11 1.8E-15 132.9 34.8 269 134-528 67-361 (466)
157 KOG0269 WD40 repeat-containing 99.5 6.6E-13 1.4E-17 157.6 16.1 216 148-483 107-336 (839)
158 KOG1445 Tumor-specific antigen 99.5 8.4E-12 1.8E-16 144.5 24.6 106 422-527 630-751 (1012)
159 KOG4328 WD40 protein [Function 99.4 7.7E-12 1.7E-16 141.6 22.6 270 191-524 186-493 (498)
160 KOG0270 WD40 repeat-containing 99.4 3.8E-12 8.3E-17 143.7 20.0 262 109-487 169-449 (463)
161 KOG2106 Uncharacterized conser 99.4 1.5E-10 3.3E-15 132.1 32.9 305 191-559 200-518 (626)
162 KOG0649 WD40 repeat protein [G 99.4 1.7E-11 3.7E-16 129.2 23.2 184 131-352 61-247 (325)
163 KOG0302 Ribosome Assembly prot 99.4 2.9E-12 6.2E-17 142.0 18.0 238 191-519 151-432 (440)
164 KOG0650 WD40 repeat nucleolar 99.4 5.4E-12 1.2E-16 146.2 19.0 264 228-526 385-680 (733)
165 KOG0303 Actin-binding protein 99.4 9.2E-12 2E-16 138.6 20.1 201 191-530 81-298 (472)
166 KOG1063 RNA polymerase II elon 99.4 3E-11 6.6E-16 142.2 25.2 328 143-524 25-389 (764)
167 KOG0303 Actin-binding protein 99.4 1.6E-12 3.4E-17 144.6 13.3 109 415-525 127-248 (472)
168 KOG2055 WD40 repeat protein [G 99.4 1.6E-11 3.5E-16 139.0 20.0 236 191-526 213-467 (514)
169 KOG4378 Nuclear protein COP1 [ 99.4 3E-11 6.4E-16 137.4 22.1 285 143-512 4-308 (673)
170 PRK11028 6-phosphogluconolacto 99.4 3.5E-10 7.7E-15 130.3 29.2 267 148-527 9-305 (330)
171 KOG1034 Transcriptional repres 99.4 8.4E-12 1.8E-16 136.4 14.6 249 203-525 105-382 (385)
172 KOG2055 WD40 repeat protein [G 99.4 8.3E-11 1.8E-15 133.4 22.9 282 124-526 201-512 (514)
173 KOG2919 Guanine nucleotide-bin 99.3 4.5E-11 9.8E-16 130.4 19.9 252 195-530 53-331 (406)
174 KOG1188 WD40 repeat protein [G 99.3 3.2E-11 7E-16 132.6 17.4 258 204-525 41-345 (376)
175 KOG0322 G-protein beta subunit 99.3 3.4E-11 7.3E-16 128.5 16.7 268 191-525 14-322 (323)
176 KOG1034 Transcriptional repres 99.3 1.8E-11 3.9E-16 133.8 13.7 96 148-271 112-212 (385)
177 KOG1007 WD repeat protein TSSC 99.3 1.3E-10 2.9E-15 125.1 19.7 244 191-525 63-360 (370)
178 KOG1517 Guanine nucleotide bin 99.3 2.7E-10 5.8E-15 139.0 24.6 279 193-528 1066-1383(1387)
179 KOG1009 Chromatin assembly com 99.3 6.3E-10 1.4E-14 124.9 25.7 159 191-367 13-180 (434)
180 KOG1009 Chromatin assembly com 99.3 4.3E-10 9.3E-15 126.2 23.4 138 134-283 15-166 (434)
181 KOG0307 Vesicle coat complex C 99.2 6E-11 1.3E-15 146.8 14.5 231 144-488 81-328 (1049)
182 PRK01742 tolB translocation pr 99.2 4.4E-10 9.6E-15 134.5 21.3 208 191-507 203-424 (429)
183 KOG4328 WD40 protein [Function 99.2 8.1E-10 1.8E-14 125.5 21.5 278 134-488 188-496 (498)
184 KOG0771 Prolactin regulatory e 99.2 1.4E-10 3.1E-15 130.8 15.6 71 195-274 148-219 (398)
185 KOG1538 Uncharacterized conser 99.2 7.1E-10 1.5E-14 129.4 20.8 265 133-486 13-292 (1081)
186 KOG1587 Cytoplasmic dynein int 99.2 2.4E-09 5.3E-14 129.5 25.3 279 150-526 221-516 (555)
187 KOG2919 Guanine nucleotide-bin 99.2 1.1E-09 2.4E-14 119.7 20.0 223 200-517 120-361 (406)
188 KOG4227 WD40 repeat protein [G 99.2 1.4E-09 2.9E-14 120.8 20.7 285 191-536 56-398 (609)
189 KOG4378 Nuclear protein COP1 [ 99.2 2.8E-10 6E-15 129.6 15.5 248 148-474 54-309 (673)
190 KOG0644 Uncharacterized conser 99.2 3.4E-11 7.4E-16 143.6 8.2 240 234-532 183-432 (1113)
191 KOG1240 Protein kinase contain 99.2 2.1E-09 4.5E-14 133.4 22.6 282 191-524 1048-1431(1431)
192 PRK01742 tolB translocation pr 99.1 1.7E-09 3.7E-14 129.5 20.9 207 211-526 182-401 (429)
193 KOG1007 WD repeat protein TSSC 99.1 4.1E-09 8.9E-14 113.9 21.4 231 211-527 38-290 (370)
194 KOG1445 Tumor-specific antigen 99.1 2E-09 4.2E-14 125.3 18.1 199 191-527 627-845 (1012)
195 KOG1963 WD40 repeat protein [G 99.1 1.6E-08 3.5E-13 123.0 25.9 275 193-487 207-538 (792)
196 KOG1334 WD40 repeat protein [G 99.1 1.3E-09 2.8E-14 124.6 14.8 270 191-525 142-465 (559)
197 PRK03629 tolB translocation pr 99.1 2.3E-08 4.9E-13 119.9 25.8 208 191-506 198-425 (429)
198 KOG1273 WD40 repeat protein [G 99.1 5.4E-08 1.2E-12 106.4 25.2 260 142-487 35-322 (405)
199 PRK11028 6-phosphogluconolacto 99.0 1.1E-07 2.5E-12 109.5 26.6 239 141-487 45-304 (330)
200 KOG0974 WD-repeat protein WDR6 99.0 3.9E-08 8.4E-13 121.4 22.6 113 415-527 171-289 (967)
201 KOG0322 G-protein beta subunit 98.9 1.6E-08 3.4E-13 108.4 15.8 251 233-534 6-289 (323)
202 PRK04922 tolB translocation pr 98.9 9.4E-08 2E-12 114.7 24.6 206 191-504 203-428 (433)
203 KOG1963 WD40 repeat protein [G 98.9 1.5E-07 3.4E-12 114.6 23.4 281 196-525 21-321 (792)
204 KOG1240 Protein kinase contain 98.9 1.5E-07 3.2E-12 117.4 23.1 244 233-529 1040-1337(1431)
205 KOG0290 Conserved WD40 repeat- 98.9 1.3E-07 2.7E-12 102.7 18.8 112 416-527 193-319 (364)
206 KOG4227 WD40 repeat protein [G 98.8 2.6E-07 5.7E-12 103.0 20.1 286 133-486 57-386 (609)
207 KOG1310 WD40 repeat protein [G 98.8 5.8E-09 1.3E-13 120.2 7.4 133 396-528 27-180 (758)
208 KOG0974 WD-repeat protein WDR6 98.8 9E-08 2E-12 118.2 17.8 188 142-490 99-291 (967)
209 PRK05137 tolB translocation pr 98.8 1.1E-06 2.3E-11 105.7 26.3 74 191-273 201-281 (435)
210 KOG1310 WD40 repeat protein [G 98.8 5E-08 1.1E-12 112.8 13.8 124 191-341 50-179 (758)
211 PF03372 Exo_endo_phos: Endonu 98.8 4.6E-09 1E-13 113.2 5.0 61 642-704 72-135 (249)
212 KOG1517 Guanine nucleotide bin 98.8 1.3E-07 2.9E-12 116.1 17.3 99 430-528 1177-1289(1387)
213 TIGR03300 assembly_YfgL outer 98.8 3.3E-06 7.1E-11 99.3 28.4 276 137-527 60-339 (377)
214 KOG1188 WD40 repeat protein [G 98.8 8.7E-08 1.9E-12 106.1 13.8 96 433-528 87-198 (376)
215 PRK03629 tolB translocation pr 98.7 3.1E-06 6.8E-11 101.6 27.6 207 212-525 178-405 (429)
216 PRK02889 tolB translocation pr 98.7 1.5E-06 3.4E-11 104.1 24.9 71 191-270 195-270 (427)
217 KOG0290 Conserved WD40 repeat- 98.7 1.7E-07 3.7E-12 101.7 14.5 111 144-273 114-230 (364)
218 PRK05421 hypothetical protein; 98.7 2.9E-07 6.2E-12 103.3 16.8 43 676-718 134-177 (263)
219 TIGR02800 propeller_TolB tol-p 98.7 2.4E-06 5.3E-11 101.5 25.2 74 191-273 189-269 (417)
220 KOG1524 WD40 repeat-containing 98.7 4E-07 8.7E-12 105.2 17.0 201 203-521 75-281 (737)
221 PRK11756 exonuclease III; Prov 98.7 1.1E-07 2.4E-12 106.7 12.1 126 555-717 2-134 (268)
222 TIGR03395 sphingomy sphingomye 98.7 7E-07 1.5E-11 101.2 17.8 47 673-719 117-169 (283)
223 PRK05137 tolB translocation pr 98.6 9.2E-06 2E-10 97.7 27.4 197 213-516 182-396 (435)
224 KOG2110 Uncharacterized conser 98.6 6.7E-06 1.4E-10 92.3 23.8 153 137-341 92-249 (391)
225 TIGR00633 xth exodeoxyribonucl 98.6 4.7E-07 1E-11 100.3 13.5 36 555-594 2-38 (255)
226 PRK04922 tolB translocation pr 98.6 4.9E-06 1.1E-10 100.0 22.8 205 212-525 183-410 (433)
227 KOG2110 Uncharacterized conser 98.6 1.1E-05 2.4E-10 90.6 23.0 89 439-527 152-249 (391)
228 KOG4547 WD40 repeat-containing 98.5 2.8E-06 6.1E-11 100.2 18.8 105 421-527 104-221 (541)
229 KOG1272 WD40-repeat-containing 98.5 2.6E-07 5.6E-12 105.6 9.1 222 195-524 133-360 (545)
230 KOG2394 WD40 protein DMR-N9 [G 98.5 2.2E-07 4.8E-12 107.7 8.4 87 421-507 292-383 (636)
231 TIGR03300 assembly_YfgL outer 98.5 4.2E-05 9.1E-10 90.0 27.9 267 137-523 100-376 (377)
232 KOG1587 Cytoplasmic dynein int 98.5 7.7E-06 1.7E-10 99.6 21.5 238 142-487 255-516 (555)
233 PRK00178 tolB translocation pr 98.5 3.1E-05 6.7E-10 92.9 26.3 74 191-273 198-278 (430)
234 PF02239 Cytochrom_D1: Cytochr 98.5 9.4E-05 2E-09 87.1 29.1 303 148-527 13-348 (369)
235 KOG2394 WD40 protein DMR-N9 [G 98.5 4.7E-07 1E-11 105.0 9.3 150 133-291 223-383 (636)
236 KOG4497 Uncharacterized conser 98.4 1.4E-05 3.1E-10 88.3 20.0 99 421-519 320-425 (447)
237 PF08662 eIF2A: Eukaryotic tra 98.4 4E-06 8.8E-11 89.8 15.6 115 191-348 59-186 (194)
238 PRK04792 tolB translocation pr 98.4 3.1E-05 6.7E-10 93.6 24.8 74 191-273 217-297 (448)
239 TIGR02800 propeller_TolB tol-p 98.4 5E-05 1.1E-09 90.3 26.2 98 426-523 284-391 (417)
240 KOG4190 Uncharacterized conser 98.4 7.3E-07 1.6E-11 102.8 9.8 246 191-524 735-986 (1034)
241 KOG1354 Serine/threonine prote 98.4 1.7E-05 3.7E-10 88.2 20.0 279 191-497 25-371 (433)
242 KOG3881 Uncharacterized conser 98.4 2.1E-05 4.6E-10 88.9 20.4 102 431-532 217-326 (412)
243 PRK02889 tolB translocation pr 98.4 3.8E-05 8.2E-10 92.2 24.1 95 425-519 289-393 (427)
244 KOG0771 Prolactin regulatory e 98.4 5E-06 1.1E-10 94.7 15.3 68 136-224 148-218 (398)
245 PF02239 Cytochrom_D1: Cytochr 98.4 7.9E-05 1.7E-09 87.7 26.0 293 205-562 8-338 (369)
246 KOG2111 Uncharacterized conser 98.4 0.00011 2.4E-09 81.4 25.0 92 436-527 155-257 (346)
247 PF08662 eIF2A: Eukaryotic tra 98.4 2.4E-06 5.3E-11 91.5 12.0 103 420-526 60-179 (194)
248 KOG2139 WD40 repeat protein [G 98.4 0.00016 3.4E-09 81.3 26.1 157 132-339 98-267 (445)
249 KOG2111 Uncharacterized conser 98.4 1.5E-05 3.3E-10 88.1 17.4 173 118-341 80-257 (346)
250 KOG1524 WD40 repeat-containing 98.3 2.1E-05 4.5E-10 91.4 18.0 130 391-521 112-250 (737)
251 KOG4190 Uncharacterized conser 98.3 7.6E-07 1.7E-11 102.7 6.2 91 435-525 846-947 (1034)
252 KOG1272 WD40-repeat-containing 98.3 1.2E-06 2.5E-11 100.4 6.8 100 427-526 217-323 (545)
253 PF00400 WD40: WD domain, G-be 98.3 2.3E-06 5E-11 66.6 6.1 36 233-268 3-39 (39)
254 KOG1334 WD40 repeat protein [G 98.2 7.4E-06 1.6E-10 94.5 12.5 248 234-527 135-425 (559)
255 KOG2321 WD40 repeat protein [G 98.2 0.00023 5.1E-09 83.8 23.6 283 192-532 52-349 (703)
256 PRK11138 outer membrane biogen 98.2 0.00088 1.9E-08 79.6 28.7 331 121-524 42-392 (394)
257 TIGR00195 exoDNase_III exodeox 98.2 1.6E-05 3.4E-10 88.7 12.7 37 555-595 2-38 (254)
258 PLN02919 haloacid dehalogenase 98.2 0.00097 2.1E-08 88.4 31.3 268 142-487 579-888 (1057)
259 KOG1064 RAVE (regulator of V-A 98.1 8E-06 1.7E-10 105.4 11.1 89 438-536 2313-2408(2439)
260 PLN02919 haloacid dehalogenase 98.1 0.00084 1.8E-08 88.9 30.0 257 195-527 571-889 (1057)
261 KOG1523 Actin-related protein 98.1 0.00026 5.6E-09 78.6 20.9 240 191-525 10-277 (361)
262 KOG2139 WD40 repeat protein [G 98.1 0.00036 7.7E-09 78.5 21.2 180 194-432 101-293 (445)
263 COG3568 ElsH Metal-dependent h 98.1 6.6E-05 1.4E-09 82.8 15.1 136 551-717 7-157 (259)
264 PRK00178 tolB translocation pr 98.1 0.0011 2.4E-08 79.6 26.9 51 214-273 180-234 (430)
265 KOG3881 Uncharacterized conser 98.0 0.00021 4.5E-09 81.2 17.8 210 191-491 105-325 (412)
266 KOG3914 WD repeat protein WDR4 98.0 1.8E-05 3.8E-10 90.0 9.3 77 191-275 151-228 (390)
267 KOG2315 Predicted translation 98.0 0.0014 3.1E-08 77.5 25.0 108 417-526 268-390 (566)
268 KOG1409 Uncharacterized conser 98.0 0.00014 2.9E-09 81.4 15.9 91 435-525 170-269 (404)
269 PRK13911 exodeoxyribonuclease 98.0 0.00012 2.7E-09 81.5 14.9 36 555-594 2-38 (250)
270 KOG1064 RAVE (regulator of V-A 97.9 3.4E-05 7.3E-10 99.9 11.2 213 193-519 2210-2439(2439)
271 PF13360 PQQ_2: PQQ-like domai 97.9 0.0039 8.6E-08 67.8 26.1 96 430-528 122-232 (238)
272 KOG0309 Conserved WD40 repeat- 97.9 4.2E-05 9.2E-10 91.7 10.8 223 204-527 83-340 (1081)
273 PF13360 PQQ_2: PQQ-like domai 97.9 0.0012 2.6E-08 71.9 21.1 229 150-491 2-235 (238)
274 TIGR02658 TTQ_MADH_Hv methylam 97.9 0.013 2.8E-07 68.4 30.4 256 213-528 27-332 (352)
275 KOG4547 WD40 repeat-containing 97.9 0.00031 6.8E-09 83.4 17.1 123 202-362 69-194 (541)
276 PRK04792 tolB translocation pr 97.9 0.0017 3.6E-08 78.7 24.0 51 214-273 199-253 (448)
277 PF00400 WD40: WD domain, G-be 97.8 2.2E-05 4.8E-10 61.0 4.4 36 450-485 2-39 (39)
278 KOG2695 WD40 repeat protein [G 97.7 6.2E-05 1.3E-09 84.0 7.7 209 88-349 171-385 (425)
279 PRK01029 tolB translocation pr 97.7 0.0056 1.2E-07 73.8 25.0 70 424-494 331-410 (428)
280 KOG0280 Uncharacterized conser 97.7 0.00023 5.1E-09 78.2 11.1 100 427-526 129-241 (339)
281 KOG2321 WD40 repeat protein [G 97.7 0.0004 8.7E-09 81.9 13.5 130 191-350 175-312 (703)
282 smart00476 DNaseIc deoxyribonu 97.7 0.00051 1.1E-08 77.4 13.8 70 631-701 78-154 (276)
283 TIGR02658 TTQ_MADH_Hv methylam 97.7 0.032 6.8E-07 65.2 28.9 69 425-494 253-338 (352)
284 COG2706 3-carboxymuconate cycl 97.7 0.039 8.5E-07 62.9 28.3 248 191-526 39-321 (346)
285 PF10282 Lactonase: Lactonase, 97.7 0.097 2.1E-06 61.2 33.1 256 192-486 37-321 (345)
286 KOG3914 WD repeat protein WDR4 97.6 0.00015 3.2E-09 82.7 8.6 96 436-532 128-229 (390)
287 PF14874 PapD-like: Flagellar- 97.6 0.00096 2.1E-08 63.7 13.0 93 966-1100 1-98 (102)
288 COG5170 CDC55 Serine/threonine 97.6 0.0013 2.9E-08 72.6 14.8 77 191-270 26-117 (460)
289 PLN03144 Carbon catabolite rep 97.5 0.0026 5.7E-08 78.5 18.4 30 690-719 418-447 (606)
290 KOG2041 WD40 repeat protein [G 97.4 0.012 2.6E-07 71.2 20.6 78 192-270 15-101 (1189)
291 KOG2695 WD40 repeat protein [G 97.4 0.0002 4.3E-09 80.1 5.6 108 420-528 253-378 (425)
292 PRK01029 tolB translocation pr 97.4 0.02 4.4E-07 69.0 23.3 102 425-526 286-403 (428)
293 COG5354 Uncharacterized protei 97.4 0.061 1.3E-06 63.6 25.6 109 419-527 274-396 (561)
294 KOG2315 Predicted translation 97.4 0.0084 1.8E-07 71.2 18.9 73 421-493 313-396 (566)
295 KOG1409 Uncharacterized conser 97.4 0.0094 2E-07 67.1 18.2 239 188-487 20-270 (404)
296 PF08450 SGL: SMP-30/Gluconola 97.3 0.27 6E-06 54.3 29.0 85 422-506 136-232 (246)
297 PRK04043 tolB translocation pr 97.2 0.062 1.3E-06 64.7 25.0 72 193-273 189-268 (419)
298 COG0708 XthA Exonuclease III [ 97.2 0.00075 1.6E-08 74.8 7.9 110 555-703 2-113 (261)
299 PRK11138 outer membrane biogen 97.2 0.091 2E-06 62.5 25.3 96 430-527 256-354 (394)
300 KOG1354 Serine/threonine prote 97.1 0.0071 1.5E-07 68.0 14.1 105 422-527 216-360 (433)
301 COG4946 Uncharacterized protei 97.1 0.63 1.4E-05 54.8 29.8 110 417-526 357-477 (668)
302 KOG1523 Actin-related protein 97.1 0.0046 1E-07 69.0 12.4 114 413-526 49-176 (361)
303 PTZ00297 pantothenate kinase; 97.1 0.01 2.2E-07 80.5 18.3 43 674-717 130-177 (1452)
304 COG2706 3-carboxymuconate cycl 97.1 0.91 2E-05 52.2 31.4 115 194-341 91-222 (346)
305 PF10282 Lactonase: Lactonase, 97.0 1 2.2E-05 52.6 31.5 269 206-526 2-322 (345)
306 KOG0309 Conserved WD40 repeat- 97.0 0.004 8.7E-08 75.4 10.9 109 417-526 112-232 (1081)
307 KOG0280 Uncharacterized conser 96.9 0.032 6.8E-07 62.0 16.6 111 414-525 160-283 (339)
308 smart00320 WD40 WD40 repeats. 96.7 0.0033 7.2E-08 45.7 5.1 36 233-268 4-40 (40)
309 PF04762 IKI3: IKI3 family; I 96.7 1.1 2.4E-05 59.1 31.1 68 191-268 75-148 (928)
310 PF07433 DUF1513: Protein of u 96.6 0.45 9.7E-06 54.3 23.0 58 419-478 216-277 (305)
311 KOG1912 WD40 repeat protein [G 96.6 0.083 1.8E-06 65.0 17.8 110 142-279 25-152 (1062)
312 KOG2314 Translation initiation 96.5 0.32 7E-06 58.2 21.8 70 195-275 214-295 (698)
313 KOG4714 Nucleoporin [Nuclear s 96.4 0.027 5.9E-07 61.5 11.6 71 422-492 182-259 (319)
314 COG4946 Uncharacterized protei 96.4 1.2 2.5E-05 52.7 24.7 77 191-276 359-437 (668)
315 KOG1645 RING-finger-containing 96.2 0.18 4E-06 58.2 17.1 74 191-273 193-269 (463)
316 PRK04043 tolB translocation pr 96.1 1.1 2.3E-05 54.2 24.5 98 427-525 284-397 (419)
317 PF11768 DUF3312: Protein of u 96.1 0.023 5E-07 68.4 9.8 71 191-271 259-330 (545)
318 KOG2756 Predicted Mg2+-depende 96.1 0.02 4.3E-07 62.6 8.4 39 681-719 196-234 (349)
319 PRK15251 cytolethal distending 96.0 0.14 3E-06 57.5 14.9 38 675-718 140-177 (271)
320 PF00635 Motile_Sperm: MSP (Ma 95.9 0.041 8.8E-07 52.9 8.9 64 969-1054 2-70 (109)
321 COG5354 Uncharacterized protei 95.8 1.2 2.6E-05 53.1 22.0 70 423-492 319-400 (561)
322 KOG4714 Nucleoporin [Nuclear s 95.8 0.0067 1.5E-07 66.1 3.4 72 193-271 181-255 (319)
323 KOG3873 Sphingomyelinase famil 95.8 0.019 4.2E-07 65.2 7.0 63 636-701 73-140 (422)
324 KOG4497 Uncharacterized conser 95.8 2.4 5.2E-05 48.2 22.9 290 149-479 69-424 (447)
325 smart00320 WD40 WD40 repeats. 95.5 0.031 6.8E-07 40.3 5.3 36 450-485 3-40 (40)
326 PF15492 Nbas_N: Neuroblastoma 95.5 1 2.2E-05 50.4 18.9 72 195-269 47-126 (282)
327 KOG4532 WD40-like repeat conta 95.5 0.35 7.7E-06 53.3 14.8 103 143-271 130-234 (344)
328 KOG2444 WD40 repeat protein [G 95.3 0.034 7.3E-07 60.1 6.5 96 432-527 72-178 (238)
329 KOG2114 Vacuolar assembly/sort 95.3 0.83 1.8E-05 57.4 18.9 80 421-501 173-259 (933)
330 KOG3621 WD40 repeat-containing 95.1 5 0.00011 49.9 24.4 114 134-271 37-155 (726)
331 PF15492 Nbas_N: Neuroblastoma 95.0 6 0.00013 44.5 22.6 75 247-349 3-81 (282)
332 PF08450 SGL: SMP-30/Gluconola 94.9 7.4 0.00016 42.9 27.6 55 422-476 186-244 (246)
333 KOG0882 Cyclophilin-related pe 94.8 0.28 6E-06 57.4 12.2 75 191-271 9-85 (558)
334 KOG1275 PAB-dependent poly(A) 94.6 0.11 2.4E-06 65.0 9.1 96 432-527 149-255 (1118)
335 cd00216 PQQ_DH Dehydrogenases 94.5 15 0.00032 45.3 27.5 94 433-529 304-427 (488)
336 PF07433 DUF1513: Protein of u 94.3 6 0.00013 45.4 21.2 96 418-516 161-276 (305)
337 COG3386 Gluconolactonase [Carb 93.8 13 0.00028 43.1 23.1 57 422-478 215-276 (307)
338 PF14783 BBS2_Mid: Ciliary BBS 93.7 1.9 4.1E-05 42.1 13.7 90 427-520 10-108 (111)
339 KOG2066 Vacuolar assembly/sort 93.5 0.53 1.2E-05 58.7 11.8 93 432-527 85-188 (846)
340 COG5170 CDC55 Serine/threonine 93.5 0.25 5.4E-06 55.2 8.2 140 191-352 172-322 (460)
341 KOG2338 Transcriptional effect 93.3 0.14 3E-06 61.0 6.2 144 552-719 115-282 (495)
342 COG3292 Predicted periplasmic 93.1 3.9 8.4E-05 49.8 17.6 124 112-268 190-316 (671)
343 KOG4649 PQQ (pyrrolo-quinoline 92.8 19 0.00041 40.2 25.0 79 125-224 45-126 (354)
344 KOG0882 Cyclophilin-related pe 92.6 0.75 1.6E-05 54.0 10.6 93 436-528 118-233 (558)
345 cd00216 PQQ_DH Dehydrogenases 92.5 34 0.00073 42.2 29.2 33 464-496 401-434 (488)
346 KOG1832 HIV-1 Vpr-binding prot 92.4 0.1 2.2E-06 65.0 3.5 73 191-271 1101-1176(1516)
347 KOG2066 Vacuolar assembly/sort 92.3 4.7 0.0001 50.8 17.4 110 200-350 80-197 (846)
348 PF11768 DUF3312: Protein of u 92.2 0.46 1E-05 57.6 8.8 68 419-487 259-329 (545)
349 PF08553 VID27: VID27 cytoplas 90.9 4.1 8.8E-05 52.5 15.6 65 421-486 579-646 (794)
350 KOG2444 WD40 repeat protein [G 90.9 0.71 1.5E-05 50.2 7.6 108 136-271 64-178 (238)
351 KOG1275 PAB-dependent poly(A) 90.9 4 8.7E-05 51.9 14.8 65 200-273 184-257 (1118)
352 KOG2079 Vacuolar assembly/sort 90.8 0.49 1.1E-05 60.7 7.2 92 433-526 102-203 (1206)
353 PF04762 IKI3: IKI3 family; I 90.5 76 0.0016 42.4 27.3 104 423-527 213-334 (928)
354 KOG2041 WD40 repeat protein [G 89.7 0.96 2.1E-05 55.6 8.1 112 413-525 65-185 (1189)
355 KOG2079 Vacuolar assembly/sort 89.4 0.81 1.8E-05 58.8 7.5 69 191-269 130-202 (1206)
356 KOG1645 RING-finger-containing 88.8 0.86 1.9E-05 52.9 6.6 90 415-505 189-288 (463)
357 KOG1920 IkappaB kinase complex 88.7 99 0.0021 41.4 25.0 67 191-267 68-136 (1265)
358 KOG3621 WD40 repeat-containing 88.6 53 0.0012 41.3 21.7 114 198-341 40-155 (726)
359 KOG1912 WD40 repeat protein [G 88.6 5.5 0.00012 49.9 13.4 93 432-524 81-184 (1062)
360 KOG2114 Vacuolar assembly/sort 88.4 20 0.00042 45.9 18.1 125 191-349 125-252 (933)
361 KOG1832 HIV-1 Vpr-binding prot 88.3 0.42 9.2E-06 59.7 3.9 121 414-540 1096-1228(1516)
362 PF14783 BBS2_Mid: Ciliary BBS 87.9 4.2 9E-05 39.8 9.7 61 198-269 9-70 (111)
363 PF14583 Pectate_lyase22: Olig 87.4 71 0.0015 38.1 26.0 70 198-274 42-114 (386)
364 PF04841 Vps16_N: Vps16, N-ter 86.7 82 0.0018 38.0 26.9 48 214-270 62-109 (410)
365 PRK13616 lipoprotein LpqB; Pro 86.6 32 0.00069 43.5 19.1 61 423-483 500-564 (591)
366 KOG4640 Anaphase-promoting com 86.4 2.6 5.6E-05 51.7 9.0 71 422-492 23-98 (665)
367 KOG4532 WD40-like repeat conta 86.2 6.4 0.00014 43.9 11.0 79 191-273 203-285 (344)
368 PF08553 VID27: VID27 cytoplas 86.0 2.8 6.2E-05 53.8 9.6 93 432-525 544-646 (794)
369 PF04053 Coatomer_WDAD: Coatom 85.9 87 0.0019 38.3 21.7 61 193-267 34-94 (443)
370 KOG2395 Protein involved in va 85.0 11 0.00023 45.8 12.8 64 422-486 433-499 (644)
371 PF00780 CNH: CNH domain; Int 84.3 74 0.0016 35.4 25.4 74 421-497 191-266 (275)
372 KOG4649 PQQ (pyrrolo-quinoline 84.0 80 0.0017 35.5 25.2 112 203-354 23-137 (354)
373 KOG4640 Anaphase-promoting com 83.6 3.4 7.3E-05 50.8 8.1 73 192-273 21-95 (665)
374 COG3292 Predicted periplasmic 82.3 70 0.0015 39.6 18.1 112 125-266 157-271 (671)
375 PRK02888 nitrous-oxide reducta 80.4 46 0.001 41.9 16.4 59 212-274 295-355 (635)
376 KOG2395 Protein involved in va 80.3 6.4 0.00014 47.6 8.7 90 434-524 398-498 (644)
377 PF12894 Apc4_WD40: Anaphase-p 79.4 4.7 0.0001 33.3 5.2 32 191-222 11-42 (47)
378 KOG1920 IkappaB kinase complex 77.4 1.3E+02 0.0029 40.3 19.5 104 424-527 200-323 (1265)
379 TIGR03075 PQQ_enz_alc_DH PQQ-d 76.3 2.1E+02 0.0046 35.7 28.3 54 478-531 440-495 (527)
380 PF14529 Exo_endo_phos_2: Endo 71.9 4.5 9.7E-05 38.9 3.9 13 798-810 32-44 (119)
381 KOG2314 Translation initiation 71.6 15 0.00032 44.8 8.6 106 424-532 215-340 (698)
382 KOG3617 WD40 and TPR repeat-co 70.7 1.2E+02 0.0027 39.1 16.2 68 244-340 62-131 (1416)
383 COG3490 Uncharacterized protei 70.3 1.1E+02 0.0024 34.9 14.4 62 198-267 120-186 (366)
384 KOG0439 VAMP-associated protei 69.9 11 0.00024 41.1 6.8 49 981-1051 26-74 (218)
385 PRK02888 nitrous-oxide reducta 69.8 1.5E+02 0.0033 37.5 17.1 101 420-520 321-458 (635)
386 KOG1916 Nuclear protein, conta 68.7 5.1 0.00011 51.0 4.2 67 433-499 198-283 (1283)
387 KOG1916 Nuclear protein, conta 68.2 2.9 6.2E-05 53.1 2.0 92 440-531 153-270 (1283)
388 PF14870 PSII_BNR: Photosynthe 68.1 93 0.002 36.0 14.0 66 191-268 144-213 (302)
389 KOG1900 Nuclear pore complex, 67.6 48 0.001 44.5 12.6 68 418-487 177-272 (1311)
390 PF06433 Me-amine-dh_H: Methyl 66.4 2.7E+02 0.0059 32.8 23.3 48 480-528 270-322 (342)
391 PRK13616 lipoprotein LpqB; Pro 66.4 2.8E+02 0.006 35.3 18.9 97 421-518 449-560 (591)
392 COG3386 Gluconolactonase [Carb 64.9 2.7E+02 0.0059 32.3 21.8 98 418-515 161-274 (307)
393 KOG1008 Uncharacterized conser 61.7 4.1 8.9E-05 50.1 1.6 76 191-270 102-184 (783)
394 PF04841 Vps16_N: Vps16, N-ter 61.5 3.6E+02 0.0078 32.5 23.4 50 460-509 217-270 (410)
395 PF03178 CPSF_A: CPSF A subuni 61.3 2.4E+02 0.0052 32.4 16.1 104 421-526 90-202 (321)
396 PF04053 Coatomer_WDAD: Coatom 60.2 74 0.0016 38.9 11.9 132 387-525 36-172 (443)
397 PF06280 DUF1034: Fn3-like dom 59.7 8.8 0.00019 37.3 3.3 71 979-1053 7-80 (112)
398 PF14655 RAB3GAP2_N: Rab3 GTPa 57.7 48 0.001 40.0 9.6 81 415-495 303-407 (415)
399 PF12894 Apc4_WD40: Anaphase-p 57.4 24 0.00052 29.1 4.9 29 241-269 11-40 (47)
400 PF07610 DUF1573: Protein of u 56.5 42 0.00092 27.2 6.2 21 1030-1050 24-44 (45)
401 PF00345 PapD_N: Pili and flag 56.2 64 0.0014 31.6 8.8 67 970-1049 3-70 (122)
402 KOG1008 Uncharacterized conser 54.4 5.1 0.00011 49.3 0.8 125 417-544 100-241 (783)
403 KOG3617 WD40 and TPR repeat-co 52.8 11 0.00024 47.7 3.2 69 194-271 62-132 (1416)
404 PF11715 Nup160: Nucleoporin N 52.0 34 0.00075 42.6 7.6 34 192-225 215-252 (547)
405 PF00930 DPPIV_N: Dipeptidyl p 51.8 4.5E+02 0.0098 30.7 25.4 64 200-272 1-73 (353)
406 COG0823 TolB Periplasmic compo 51.1 40 0.00087 40.9 7.6 99 425-526 243-353 (425)
407 TIGR03118 PEPCTERM_chp_1 conse 49.9 4.8E+02 0.01 30.4 21.2 65 434-499 216-292 (336)
408 PF07569 Hira: TUP1-like enhan 48.6 64 0.0014 35.5 8.1 69 199-270 18-95 (219)
409 PF07569 Hira: TUP1-like enhan 46.5 78 0.0017 34.8 8.4 75 134-221 14-95 (219)
410 PF08596 Lgl_C: Lethal giant l 45.9 93 0.002 37.4 9.5 70 417-486 84-172 (395)
411 PF10313 DUF2415: Uncharacteri 44.8 59 0.0013 26.5 5.1 32 192-223 1-35 (43)
412 COG5167 VID27 Protein involved 44.1 2.8E+02 0.0061 34.1 12.6 63 424-487 567-632 (776)
413 PF14655 RAB3GAP2_N: Rab3 GTPa 40.1 2E+02 0.0043 34.9 11.0 79 191-277 307-405 (415)
414 TIGR03074 PQQ_membr_DH membran 38.2 1.1E+03 0.023 31.2 19.3 68 202-278 259-352 (764)
415 KOG4499 Ca2+-binding protein R 37.2 5.1E+02 0.011 29.1 12.3 100 243-362 159-263 (310)
416 KOG3870 Uncharacterized conser 36.0 14 0.00031 43.4 0.6 18 792-809 348-365 (434)
417 PF14646 MYCBPAP: MYCBP-associ 35.6 1.1E+02 0.0025 37.0 8.2 102 970-1087 238-342 (426)
418 PLN00033 photosystem II stabil 35.4 8.7E+02 0.019 29.3 16.6 130 393-523 248-396 (398)
419 PF12234 Rav1p_C: RAVE protein 35.1 4.1E+02 0.0088 34.0 12.9 93 468-577 40-139 (631)
420 PF12234 Rav1p_C: RAVE protein 34.3 4E+02 0.0087 34.1 12.7 102 148-269 47-155 (631)
421 PF08728 CRT10: CRT10; InterP 33.9 1.7E+02 0.0038 37.7 9.5 170 92-269 52-245 (717)
422 PF05694 SBP56: 56kDa selenium 33.9 5.2E+02 0.011 31.6 12.8 20 332-351 222-241 (461)
423 PF10168 Nup88: Nuclear pore c 32.7 5.9E+02 0.013 33.2 14.2 78 193-271 86-180 (717)
424 PF11715 Nup160: Nucleoporin N 31.9 55 0.0012 40.8 4.9 29 429-457 229-258 (547)
425 COG3021 Uncharacterized protei 31.1 32 0.00068 39.6 2.3 43 675-718 173-217 (309)
426 PF05096 Glu_cyclase_2: Glutam 30.4 8.6E+02 0.019 27.7 14.1 102 422-525 47-156 (264)
427 PF04744 Monooxygenase_B: Mono 30.0 1.3E+02 0.0029 35.4 7.0 24 1029-1053 312-335 (381)
428 COG5066 SCS2 VAMP-associated p 28.1 1.4E+02 0.003 32.6 6.1 51 980-1052 17-67 (242)
429 PF07995 GSDH: Glucose / Sorbo 27.6 5.8E+02 0.013 29.7 12.1 57 421-477 3-71 (331)
430 TIGR03075 PQQ_enz_alc_DH PQQ-d 27.2 4E+02 0.0087 33.3 11.2 65 430-494 69-146 (527)
431 PF10313 DUF2415: Uncharacteri 27.0 1.4E+02 0.003 24.5 4.6 30 242-271 1-34 (43)
432 KOG4499 Ca2+-binding protein R 26.3 4.4E+02 0.0096 29.5 9.7 86 424-509 162-264 (310)
433 PRK13684 Ycf48-like protein; P 25.6 2.1E+02 0.0045 33.5 7.9 64 191-266 172-239 (334)
434 PF03178 CPSF_A: CPSF A subuni 25.5 3.9E+02 0.0084 30.7 10.1 120 125-270 81-202 (321)
435 PF12341 DUF3639: Protein of u 25.4 1.2E+02 0.0027 22.3 3.6 24 461-484 3-26 (27)
436 PF06977 SdiA-regulated: SdiA- 25.1 1E+03 0.022 26.8 15.6 153 312-495 22-209 (248)
437 PF00780 CNH: CNH domain; Int 25.1 9.5E+02 0.021 26.5 23.8 60 141-222 6-65 (275)
438 PF12768 Rax2: Cortical protei 25.1 4.8E+02 0.01 30.0 10.4 69 191-268 36-121 (281)
439 PF08596 Lgl_C: Lethal giant l 25.0 1.3E+03 0.027 27.9 25.0 80 193-272 3-117 (395)
440 PLN00033 photosystem II stabil 23.6 8.1E+02 0.018 29.6 12.5 97 388-484 285-396 (398)
441 KOG3616 Selective LIM binding 23.0 1.4E+02 0.0031 37.9 5.8 68 193-270 16-83 (1636)
442 PF02897 Peptidase_S9_N: Proly 22.3 6.2E+02 0.013 30.0 11.3 98 142-267 134-255 (414)
443 COG3391 Uncharacterized conser 21.8 1.2E+03 0.025 27.8 13.3 90 424-514 120-224 (381)
444 TIGR03074 PQQ_membr_DH membran 21.2 6.4E+02 0.014 33.2 11.6 27 468-494 259-286 (764)
445 PF03088 Str_synth: Strictosid 21.0 3.6E+02 0.0078 25.5 6.9 36 210-254 34-69 (89)
446 PRK13202 ureB urease subunit b 20.7 2.1E+02 0.0046 27.7 5.3 71 969-1050 6-83 (104)
447 PRK15308 putative fimbrial pro 20.6 5.9E+02 0.013 28.5 9.7 81 966-1050 15-97 (234)
448 PF10647 Gmad1: Lipoprotein Lp 20.5 1.1E+03 0.023 26.4 12.0 110 413-522 17-140 (253)
No 1
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-87 Score=789.96 Aligned_cols=340 Identities=35% Similarity=0.617 Sum_probs=309.6
Q ss_pred CCCceeeeeccCCCCCchhhhhhccccccceeeeeceEEEEEEEEeCCCCCCc-hhhcccccCC-----CCCcceEEEEe
Q 001123 516 NHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQ-DALISWLGSA-----ASDVGIVVVGL 589 (1149)
Q Consensus 516 ~DgtIRlWdl~sp~pld~~i~~~l~~re~~yt~~~~~~i~v~TWNv~~~~~~~-~~l~~wl~~~-----~~~~Di~viGl 589 (1149)
.|..+.+.| |+...+.++|++++.+|+..++++||+|||||||+.+.. ++|.+||... ...+|||||||
T Consensus 506 ~q~~v~L~d-----pv~~yv~~~L~er~~eyt~~k~i~IfvgTfNvNG~s~~~k~~L~~WLfp~s~~~~~~~aDIyviG~ 580 (1080)
T KOG0566|consen 506 AQSAVILYD-----PVHEYVLKELRERRSEYTEPKDISIFVGTFNVNGRSAAFKDDLSDWLFPISRGKEFSPADIYVIGF 580 (1080)
T ss_pred ccchhhhcC-----chhHHHHHHHHHhhhhhccccceEEEEEeeeccCccccchhhHHhhccccccCCcCCcCcEEEEee
Confidence 466666665 578899999999999999999999999999999855443 5899999854 23589999999
Q ss_pred ecc-ccccchhhhhhhhhhccCCCCcchhhHHHHHhcccCC-CCcEEEEeeeccceeeeeeeeeccccCccceeEeeeEe
Q 001123 590 QEV-EMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDD-GSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVP 667 (1149)
Q Consensus 590 QEi-~~~~~~~~~~~~ke~~~~~~~~~~~~W~~~i~~~L~~-~~~y~~v~s~qL~Gl~l~vfvr~~l~~~i~~v~~~~v~ 667 (1149)
||| +|+++++..+ +.++.+.|++.|+++|+. +.+|+++.|.||+|++|++|+|+++.++|++|..++++
T Consensus 581 eEvVeLnag~iv~A---------s~tk~~~Wee~i~~~Ln~~~~kYvlL~s~QlvGv~L~iF~r~~~~p~Ik~V~~~tkK 651 (1080)
T KOG0566|consen 581 EEVVELNAGNIVSA---------STTKRRFWEEKILKTLNRYKNKYVLLRSEQLVGVCLLLFIRPDHAPYIKDVAGDTKK 651 (1080)
T ss_pred hhhhhcCccceecc---------ChHHHHHHHHHHHHHhcCCCCceEEEehhhhheeeEEEEEcccccchhhhcccceee
Confidence 997 8999876421 345578899999999987 88999999999999999999999999999999999999
Q ss_pred ecccccccCcceeEEEEEEeceEEEEeeecccccchhHHHHHHHHHHHHHhcccCCCCCccccccCCCchhhhhhhhhhh
Q 001123 668 CGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAGTMPFLLLSCVLACS 747 (1149)
Q Consensus 668 tG~~g~~gNKGaV~ir~~~~~t~lcFVn~HLaA~~~~~~~Rn~d~~~I~~~l~F~~~~~~~~~~~~~~~~~~~s~~~~~~ 747 (1149)
|||||+.||||||||||.+++|+|||||+||||+++|+++||.||.+|.++|+|+++.
T Consensus 652 TGfGG~tgNKGAVAIrf~~~~TsfCFv~SHlAAG~snv~ERn~DY~tI~r~l~Fp~Gr---------------------- 709 (1080)
T KOG0566|consen 652 TGFGGATGNKGAVAIRFVYHATSFCFVCSHLAAGQSNVEERNEDYKTIARKLRFPRGR---------------------- 709 (1080)
T ss_pred cccccccCCCceEEEEEEeccccEEEEecccccccchHhhhhhhHHHHHHhccccCCc----------------------
Confidence 9999999999999999999999999999999999999999999999999999998642
Q ss_pred hhhhhhhhccCCchhhhhhccccchhhhcccCCCCCCCcccCCCcccCccEEEEECccCCCCCCCChHHHHHHHhhcChH
Q 001123 748 MYLLWLVYRSGLPLVLYIAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFD 827 (1149)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~vfw~GDlNyRi~~~~~~~v~~~i~~~~~~ 827 (1149)
.|.+||+|||||||||||++ ++|||+++|.+++++
T Consensus 710 --------------------------------------------~I~~HD~ifW~GDFNYRI~l-~nEEVr~~v~~~d~~ 744 (1080)
T KOG0566|consen 710 --------------------------------------------MIFSHDYIFWLGDFNYRIDL-SNEEVRRLVRNQDLD 744 (1080)
T ss_pred --------------------------------------------cccCCceEEEecccceeecC-CHHHHHHHHHhccHH
Confidence 25789999999999999996 999999999999999
Q ss_pred HHHHhhHHHHHhHcCCcCCCCccCCcccCCCccccccccCCccccCCCCccccccccceeeecCCCccccccccCCCccc
Q 001123 828 WLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAGYDSGEKKRVPAWCDRILYRDSRSDLASECSLECPVAS 907 (1149)
Q Consensus 828 ~Ll~~DQL~~~~~~g~~f~gf~E~~I~F~PTYKyd~~~~g~~~yDts~k~R~PsWcDRIL~~~~~~~~~~~~~~~~p~~~ 907 (1149)
.|+++|||++||.+|++|.||.|++|+|+||||||. ||+.||||||+|+||||||||||+...
T Consensus 745 kL~e~DQL~~q~~~G~vF~gF~E~~ltF~PTYKyD~---gTd~YDTSeK~R~PAWTDRIL~r~e~~-------------- 807 (1080)
T KOG0566|consen 745 KLLEYDQLTQQMNAGQVFPGFHEGQLTFPPTYKYDP---GTDDYDTSEKCRTPAWTDRILWRGEKL-------------- 807 (1080)
T ss_pred HHhhHHHHHHHHhcCcccccccccccccCCcccccC---CCCccccchhccCccchhhheeccccc--------------
Confidence 999999999999999999999999999999999996 668999999999999999999998753
Q ss_pred ceeeeeeecccccCCCCceeeEEEEEccccCHHHHHHHHHHHhhcch
Q 001123 908 SILRYEACMDVTDSDHKPVRCIFSVDIARVDESVRRQEFGDIMTSNE 954 (1149)
Q Consensus 908 ~~~~Y~s~~~~~~SDHkPV~a~f~v~v~~vd~~~~~~~~~~i~~~~~ 954 (1149)
.++.|.+++ +++||||||+|.|+++|..||+++|.++|+|+++.+.
T Consensus 808 ~~l~Y~~~e-l~~SDHRPV~A~~~a~i~~Vd~~kk~~l~eev~~~~~ 853 (1080)
T KOG0566|consen 808 ELLSYKRAE-LKTSDHRPVYAIFRAEIFEVDEQKKLRLFEEVKERLG 853 (1080)
T ss_pred ccccccccc-ccccCCCceEEEEEEEEEEEcHHHHHHHHHHHHHHcC
Confidence 247898875 9999999999999999999999999999999998643
No 2
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=100.00 E-value=7.8e-78 Score=700.65 Aligned_cols=250 Identities=34% Similarity=0.628 Sum_probs=221.1
Q ss_pred hHHHHHhcccCCCCcEEEEeeeccceeeeeeeeeccccCccceeEeeeEeecccccccCcceeEEEEEEeceEEEEeeec
Q 001123 618 WWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCH 697 (1149)
Q Consensus 618 ~W~~~i~~~L~~~~~y~~v~s~qL~Gl~l~vfvr~~l~~~i~~v~~~~v~tG~~g~~gNKGaV~ir~~~~~t~lcFVn~H 697 (1149)
+|...+........+|++|.++||+||+|+||||+++.++|++|++++|+||+||+|||||||+|||++++|+|||||||
T Consensus 349 ~~~~~~~~~~~~~~~YvkV~S~qLvGl~L~VFvk~~l~~~Is~V~~s~V~tGl~G~~GNKGAVaIr~~l~~Ts~cFVn~H 428 (621)
T PLN03191 349 LPEDLIKDCRKVKQKYVRIVSKQMVGIYVSVWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSISMSLFQSRLCFVCSH 428 (621)
T ss_pred hhhHHHHhhccCCCCEEEEEEEeeeeEEEEEEEehhhhhhcccceeeeEeeccccccccceeEEEEEEEcCcEEEEEEec
Confidence 34555555555567999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccch--hHHHHHHHHHHHHHhcccCCCCCccccccCCCchhhhhhhhhhhhhhhhhhhccCCchhhhhhccccchhhh
Q 001123 698 FAAHLE--AVNRRNADFDHVYRTMTFCRPSNLCSAAAGTMPFLLLSCVLACSMYLLWLVYRSGLPLVLYIAAGASSVVQM 775 (1149)
Q Consensus 698 LaA~~~--~~~~Rn~d~~~I~~~l~F~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (1149)
||||++ ++++||+||.+|++++.|......
T Consensus 429 LAAg~~~~~~~rRN~D~~~I~~~l~F~~~~~~------------------------------------------------ 460 (621)
T PLN03191 429 LTSGHKDGAEQRRNADVYEIIRRTRFSSVLDT------------------------------------------------ 460 (621)
T ss_pred cccccccchHHHHHHHHHHHHhccccCccccc------------------------------------------------
Confidence 999875 478999999999999999742110
Q ss_pred cccCCCCCCCcccCCCcccCccEEEEECccCCCCCCCChHHHHHHHhhcChHHHHHhhHHHHHhHcCCcCCCCccCCccc
Q 001123 776 LRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKF 855 (1149)
Q Consensus 776 ~~~~~~~~~~~~~~~~~i~~~D~vfw~GDlNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~g~~f~gf~E~~I~F 855 (1149)
.....|.+||+|||||||||||++ ++++++++|.+++|+.||++|||++||++|++|.||+|++|+|
T Consensus 461 ------------~~~~~I~dhD~vFWlGDLNYRIdl-~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~GF~Eg~I~F 527 (621)
T PLN03191 461 ------------DQPQTIPSHDQIFWFGDLNYRLNM-LDTEVRKLVAQKRWDELINSDQLIKELRSGHVFDGWKEGPIKF 527 (621)
T ss_pred ------------CCCccccccceEEEecCccccccC-CHHHHHHHHhhccHHHHHHHhHHHHHHHcCCccCCcccCCccC
Confidence 001236689999999999999996 8999999999999999999999999999999999999999999
Q ss_pred CCCccccccccCCcccc-----CCCCccccccccceeeecCCCccccccccCCCcccceeeeeeecccccCCCCceeeEE
Q 001123 856 PPTYKFEKHLAGLAGYD-----SGEKKRVPAWCDRILYRDSRSDLASECSLECPVASSILRYEACMDVTDSDHKPVRCIF 930 (1149)
Q Consensus 856 ~PTYKyd~~~~g~~~yD-----ts~k~R~PsWcDRIL~~~~~~~~~~~~~~~~p~~~~~~~Y~s~~~~~~SDHkPV~a~f 930 (1149)
||||||++++ +.|| ||+|+|+|||||||||++.. .+++.|.+ .++++||||||+|.|
T Consensus 528 pPTYKYd~gS---d~Ydg~~~~Ts~KkR~PSWCDRILykg~~--------------i~~l~Y~s-~ei~~SDHRPV~A~F 589 (621)
T PLN03191 528 PPTYKYEINS---DRYVGENPKEGEKKRSPAWCDRILWLGKG--------------IKQLCYKR-SEIRLSDHRPVSSMF 589 (621)
T ss_pred CCCcccccCC---ccccccccccccCccccchhheEeecCCC--------------ceEeEecc-CCcccCCchhcceEE
Confidence 9999999865 5787 89999999999999999653 13578987 689999999999999
Q ss_pred EEEccccCHHHHHHHH
Q 001123 931 SVDIARVDESVRRQEF 946 (1149)
Q Consensus 931 ~v~v~~vd~~~~~~~~ 946 (1149)
.|+|+++|+.|.++++
T Consensus 590 ~v~V~~id~~k~q~~~ 605 (621)
T PLN03191 590 LVEVEVFDHRKLQRAL 605 (621)
T ss_pred EEEEEecCHHHHHhhh
Confidence 9999999998776654
No 3
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=100.00 E-value=2.4e-74 Score=653.25 Aligned_cols=300 Identities=40% Similarity=0.728 Sum_probs=263.3
Q ss_pred ceEEEEEEEEeCCCC-CCchhhcccccCC-----CCCcceEEEEeecc-ccccchhhhhhhhhhccCCCCcchhhHHHHH
Q 001123 551 NLKILAGTWNVGQGR-ASQDALISWLGSA-----ASDVGIVVVGLQEV-EMGAGFLAMSAAKETVGLEGSAVGHWWLDMI 623 (1149)
Q Consensus 551 ~~~i~v~TWNv~~~~-~~~~~l~~wl~~~-----~~~~Di~viGlQEi-~~~~~~~~~~~~ke~~~~~~~~~~~~W~~~i 623 (1149)
+++|+++|||||+.. +++++|.+||... ..+||||||||||+ ++.+..+.+ ..+.....|.+.+
T Consensus 2 ~~~v~v~TwNv~~~~~~p~~~l~~~l~~~~~~~~~~~pDI~viglQEi~~~~~~~~~~---------~~~~~~~~W~~~i 72 (310)
T smart00128 2 DIKVLVGTWNVGGLKADPKVDVTSWLFQKIDVKQSEKPDIYVIGLQEVVDLENGVLLE---------TIAGKERLWSKLI 72 (310)
T ss_pred ceEEEEEEEECCCccCCChhhHHHhhccccccccCCCCCEEEEEeeeecccchhhhhh---------ccchhHHHHHHHH
Confidence 589999999999875 5678899999753 25799999999999 666544322 1234467899999
Q ss_pred hcccCCCCcEEEEeeeccceeeeeeeeeccccCccceeEeeeEeecccccccCcceeEEEEEEeceEEEEeeecccccch
Q 001123 624 GKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE 703 (1149)
Q Consensus 624 ~~~L~~~~~y~~v~s~qL~Gl~l~vfvr~~l~~~i~~v~~~~v~tG~~g~~gNKGaV~ir~~~~~t~lcFVn~HLaA~~~ 703 (1149)
...|+.+..|.++++.+|+||+|+||+|+++.++|++|.+++++||++|.+||||||+++|++++++||||||||+||++
T Consensus 73 ~~~l~~~~~Y~~v~~~~l~gi~l~vf~~~~~~~~i~~v~~~~v~~G~~~~~~nKG~v~i~~~~~~~~~~fv~~HL~a~~~ 152 (310)
T smart00128 73 ESSLNGDGQYNVLAKVRLVGILVLVFVKANHLVYIKDVETFTVKTGMGGLWGNKGAVAVRFKLSDTSFCFVNSHLAAGAS 152 (310)
T ss_pred HHhcCCCCceEEEeeeeecceEEEEEEehhhcCccceeEeeeeeccccceeecCceEEEEEEEcCcEEEEEeeccccccc
Confidence 99997668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcccCCCCCccccccCCCchhhhhhhhhhhhhhhhhhhccCCchhhhhhccccchhhhcccCCCCC
Q 001123 704 AVNRRNADFDHVYRTMTFCRPSNLCSAAAGTMPFLLLSCVLACSMYLLWLVYRSGLPLVLYIAAGASSVVQMLRSTNPLS 783 (1149)
Q Consensus 704 ~~~~Rn~d~~~I~~~l~F~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1149)
++++||+||.+|++++.|+....
T Consensus 153 ~~~~R~~~~~~I~~~~~f~~~~~--------------------------------------------------------- 175 (310)
T smart00128 153 NVEQRNQDYKTILRALSFPERAE--------------------------------------------------------- 175 (310)
T ss_pred hhhhhHHHHHHHHHhcCCCCCcc---------------------------------------------------------
Confidence 99999999999999998874211
Q ss_pred CCcccCCCcccCccEEEEECccCCCCCCCCh-HHHHHHHhhcChHHHHHhhHHHHHhHcCCcCCCCccCCcccCCCcccc
Q 001123 784 GLTVEGVPELSEADMVIFLGDFNYRLDGITY-DEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFE 862 (1149)
Q Consensus 784 ~~~~~~~~~i~~~D~vfw~GDlNyRi~~~~~-~~v~~~i~~~~~~~Ll~~DQL~~~~~~g~~f~gf~E~~I~F~PTYKyd 862 (1149)
..+.++|++||||||||||++ ++ ++++++|++++|+.|+++|||+.+|+++++|.||.|++|+|||||||+
T Consensus 176 -------~~~~~~d~~f~~GDlNyRi~~-~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~~f~E~~I~F~PTYK~~ 247 (310)
T smart00128 176 -------LSQFDHDVVFWFGDLNFRLDS-PSYEEVRRKISKKEFDDLLEKDQLNRQKEAGKVFKGFQEGPITFPPTYKYD 247 (310)
T ss_pred -------ccccccceEEEecCcceeecC-CCHHHHHHHHhhCcHHHHhhhhhHHHHhhcccccCcCccCCcCCCCCeeec
Confidence 113579999999999999997 55 899999999999999999999999999999999999999999999999
Q ss_pred ccccCCccccCCCCccccccccceeeecCCCccccccccCCCccccee-eeeeecccccCCCCceeeEEEEEccccC
Q 001123 863 KHLAGLAGYDSGEKKRVPAWCDRILYRDSRSDLASECSLECPVASSIL-RYEACMDVTDSDHKPVRCIFSVDIARVD 938 (1149)
Q Consensus 863 ~~~~g~~~yDts~k~R~PsWcDRIL~~~~~~~~~~~~~~~~p~~~~~~-~Y~s~~~~~~SDHkPV~a~f~v~v~~vd 938 (1149)
. .|++.||+++|+|+|||||||||+...... ... .|+|++++.+||||||+|.|.|+++.+|
T Consensus 248 ~--~~t~~Yd~~~k~R~PsWcDRIL~~~~~~~~------------~~~~~Y~s~~~~~~SDHkPV~~~f~v~~~~~~ 310 (310)
T smart00128 248 S--VGTETYDTSEKKRVPAWCDRILYRSNGPNL------------IQLSEYHSGMELTTSDHKPVFATFRLKVTAVD 310 (310)
T ss_pred C--CCCccccCcccccCcchhheehhhccCCCc------------eecccccCCCccCCcCcccccEEEEEEEEecC
Confidence 2 256789999999999999999999732111 123 3999999999999999999999998765
No 4
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-66 Score=580.15 Aligned_cols=331 Identities=32% Similarity=0.504 Sum_probs=295.9
Q ss_pred CCCCchhhhhhccccccceeeeeceEEEEEEEEeCCCCCCchhhcccccC---CCCCcceEEEEeecc-ccccchhhhhh
Q 001123 528 PGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGS---AASDVGIVVVGLQEV-EMGAGFLAMSA 603 (1149)
Q Consensus 528 p~pld~~i~~~l~~re~~yt~~~~~~i~v~TWNv~~~~~~~~~l~~wl~~---~~~~~Di~viGlQEi-~~~~~~~~~~~ 603 (1149)
++|+...+..++++++.+|+..+++.+|++|+|.++..+ ..+++.||.. ...-+|+||+||||+ ++.++.+.-
T Consensus 6 ~~p~~~y~~~~l~~~~sk~~~~~~~~~f~~~~n~~~~~~-k~~~k~~lfP~~~~~~~~dlyVvGlQEvv~lt~~sils-- 82 (460)
T COG5411 6 YDPRHPYIVAVLRQRRSKYVIEKDVSIFVSTFNPPGKPP-KASTKRWLFPEIEATELADLYVVGLQEVVELTPGSILS-- 82 (460)
T ss_pred cCCCchhHHHHHHHHhhhheeecceeeEeccccCCCCCc-hhhhhhhcccccccccccceEEeccceeeeccchhhcc--
Confidence 567778888999999999999999999999999996655 7889999986 224489999999997 677665421
Q ss_pred hhhhccCCCCcchhhHHHHHhcccC---CCCcEEEEeeeccceeeeeeeeeccccCccceeEeeeEeecccccccCccee
Q 001123 604 AKETVGLEGSAVGHWWLDMIGKILD---DGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAV 680 (1149)
Q Consensus 604 ~ke~~~~~~~~~~~~W~~~i~~~L~---~~~~y~~v~s~qL~Gl~l~vfvr~~l~~~i~~v~~~~v~tG~~g~~gNKGaV 680 (1149)
.....+-..|+..+...|+ ...+|.++.+.||+|+++.||.+.+..+.+.+|..+.-+||+||..+|||||
T Consensus 83 ------~~p~~rl~~wes~~~~~Ln~~~~~eky~~l~s~q~~~~~~~vf~~~~~~~v~~~V~~~~~KtG~gg~s~nKGav 156 (460)
T COG5411 83 ------ADPYDRLRIWESKVLDCLNGAQSDEKYSLLRSPQLGGILLRVFSLATNLPVVKPVSGTVKKTGFGGSSSNKGAV 156 (460)
T ss_pred ------CCcccccchhHHHHHHHhcccccCCceEEecchhccCcceEEeeeccccceeccccccccccccceeccccccc
Confidence 1113344789999999997 3578999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeceEEEEeeecccccchhHHHHHHHHHHHHHhcccCCCCCccccccCCCchhhhhhhhhhhhhhhhhhhccCCc
Q 001123 681 GLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAGTMPFLLLSCVLACSMYLLWLVYRSGLP 760 (1149)
Q Consensus 681 ~ir~~~~~t~lcFVn~HLaA~~~~~~~Rn~d~~~I~~~l~F~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 760 (1149)
+++|.+.++.+||||||||||.+|+++|+.||+.|.+.++|+++
T Consensus 157 ~i~~~~~~t~~cFv~shlaag~~N~eeR~~Dy~~I~~~i~f~~g------------------------------------ 200 (460)
T COG5411 157 AIRFNYERTSFCFVNSHLAAGVNNIEERIFDYRSIASNICFSRG------------------------------------ 200 (460)
T ss_pred ceeEEeecCCcEEEecchhcccccHHHHHHHHHHHHHheecCCC------------------------------------
Confidence 99999999999999999999999999999999999999998753
Q ss_pred hhhhhhccccchhhhcccCCCCCCCcccCCCcccCccEEEEECccCCCCCCCChHHHHHHHhhcC--hHHHHHhhHHHHH
Q 001123 761 LVLYIAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRC--FDWLRERDQLRAE 838 (1149)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~vfw~GDlNyRi~~~~~~~v~~~i~~~~--~~~Ll~~DQL~~~ 838 (1149)
..|.+||.+||+|||||||++ ++++++..+...+ +++|+++|||..|
T Consensus 201 ------------------------------~~I~~hdti~w~GDlNyRVts-~~e~v~~~~~~~~g~~~~l~~~DqL~~e 249 (460)
T COG5411 201 ------------------------------LRIYDHDTIFWLGDLNYRVTS-TNEEVRPEIASDDGRLDKLFEYDQLLWE 249 (460)
T ss_pred ------------------------------ceecccceEEEecccCceeec-CchhcchhhhCCcchhhhhhhhhhHhhh
Confidence 235689999999999999997 9999999888777 9999999999999
Q ss_pred hHcCCcCCCCccCCcccCCCccccccccCCccccCCCCccccccccceeeecCCCccccccccCCCcccceeeeeeeccc
Q 001123 839 MEAGNVFQGMREADIKFPPTYKFEKHLAGLAGYDSGEKKRVPAWCDRILYRDSRSDLASECSLECPVASSILRYEACMDV 918 (1149)
Q Consensus 839 ~~~g~~f~gf~E~~I~F~PTYKyd~~~~g~~~yDts~k~R~PsWcDRIL~~~~~~~~~~~~~~~~p~~~~~~~Y~s~~~~ 918 (1149)
|..|++|.+|+|..|+|||||||+. ||+.||+++|.|+|||||||||++..- +...|.+++.+
T Consensus 250 ~~~g~~f~~f~E~~i~FpPTYKfd~---gt~~ydtsdk~RiPsWtDRIl~~s~~~--------------~p~sY~sip~l 312 (460)
T COG5411 250 MEVGNVFPGFKEPVITFPPTYKFDY---GTDEYDTSDKGRIPSWTDRILYKSEQL--------------TPHSYSSIPHL 312 (460)
T ss_pred hcccccccceecccccCCCceEeec---CCccccccccccCCchhhhhhhhcccc--------------ccccccccCce
Confidence 9999999999999999999999996 678999999999999999999998631 34789999999
Q ss_pred ccCCCCceeeEEEEEccccCHHHHHHHHHHHhh
Q 001123 919 TDSDHKPVRCIFSVDIARVDESVRRQEFGDIMT 951 (1149)
Q Consensus 919 ~~SDHkPV~a~f~v~v~~vd~~~~~~~~~~i~~ 951 (1149)
++||||||+|+|++++..+|++++....+++.-
T Consensus 313 ~~SDHrPV~a~~~~~i~~~d~~~k~~~~~~l~~ 345 (460)
T COG5411 313 MISDHRPVYATFRAKIKVVDPSKKEGLIEKLYA 345 (460)
T ss_pred eecCCCeEEEEEecceEEeCcchhhhhhhhhhh
Confidence 999999999999999999999988877777663
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-39 Score=355.60 Aligned_cols=325 Identities=17% Similarity=0.200 Sum_probs=253.5
Q ss_pred CCeEEEe-CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001123 142 EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (1149)
Q Consensus 142 ~~~l~ag-~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl 220 (1149)
..+|.+| +|.|+|+||+.|-.+..+ -..| ..+|+|++++|||+.||||+.||+|++||.
T Consensus 127 g~~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH-~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 127 GSRLVTGSGDTTVRLWDLDTETPLFT-------------------CKGH-KNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred CceEEecCCCceEEeeccCCCCccee-------------------ecCC-ccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 5566665 599999999886554432 2233 899999999999999999999999999999
Q ss_pred CCCCCCCCCCccceEEeecCCCCEEEEEEeCC-----Cc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeecc
Q 001123 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-----GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSY 294 (1149)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpd-----G~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~ 294 (1149)
.+|.+ ....|.||+.+|++++|-|- ++ |+|+|.||+|||||+..+.+...+.++.
T Consensus 187 ktg~~-------~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT------------ 247 (480)
T KOG0271|consen 187 KTGQQ-------IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHT------------ 247 (480)
T ss_pred CCCCc-------ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCc------------
Confidence 99873 46779999999999999763 33 8999999999999998776665554332
Q ss_pred ccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccC---CCccccc
Q 001123 295 IDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLL---PDFAMED 370 (1149)
Q Consensus 295 ~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~---~~~~~~~ 370 (1149)
..|.|+..+.. +.++|++ |+|||+|++..|.+++.|++|++.+|.++++.. .....+.
T Consensus 248 -----------------~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~ 309 (480)
T KOG0271|consen 248 -----------------ASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDH 309 (480)
T ss_pred -----------------cceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccccc
Confidence 44667777654 4777776 789999999999999999999999998888742 1111110
Q ss_pred cc-eeeEEecCCCCcc--ceeeeeeccccceEeecCCcEEEEeec-------ccccCCCCceEEEEEcCCCc-EEEEeCC
Q 001123 371 EF-KTKIVTSSKKDKA--QSSFGFFQRSRNAIMGAADAVRRVAAK-------GGFGDDNRRTEALTTSIDGM-IWTGGAN 439 (1149)
Q Consensus 371 ~~-~~~~~s~~~k~~~--~~si~f~~~~~~~i~G~~d~v~rv~~~-------g~~~~~~~~V~ava~s~Dg~-laSgs~D 439 (1149)
.- +.+-.+ ..+.++ ......-+.+..+++|+.|...-+|.. ..+.+|..-|+.|.||||++ |||||-|
T Consensus 310 t~~~~~~~s-e~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFD 388 (480)
T KOG0271|consen 310 TGRKPKSFS-EEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFD 388 (480)
T ss_pred ccccCCChH-HHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecc
Confidence 00 000000 000000 000111223467889999988777752 25678999999999999998 8899999
Q ss_pred CeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEEEE--ecCCeEEe
Q 001123 440 GLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFT 513 (1149)
Q Consensus 440 gtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa--~Dg~~LaS 513 (1149)
..|||||. +|+.+.+|+||-.+|+.++. |.+.|+|||.|.|++|||+. .++..-|.||.+.|+++. +||+.++|
T Consensus 389 kSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~s 468 (480)
T KOG0271|consen 389 KSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVAS 468 (480)
T ss_pred cceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeec
Confidence 99999999 99999999999999998865 67899999999999999987 567889999999999986 79999999
Q ss_pred ecCCCceeeee
Q 001123 514 LANHGGIRGWN 524 (1149)
Q Consensus 514 gS~DgtIRlWd 524 (1149)
|+.|+.+|+|.
T Consensus 469 ggkdkv~~lw~ 479 (480)
T KOG0271|consen 469 GGKDKVLRLWR 479 (480)
T ss_pred CCCceEEEeec
Confidence 99999999995
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-36 Score=328.78 Aligned_cols=301 Identities=16% Similarity=0.245 Sum_probs=227.8
Q ss_pred eec-CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEE
Q 001123 188 VKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (1149)
Q Consensus 188 ~~G-~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIR 265 (1149)
+.| .++|+|++|+|+|+.|||||-|.|+|+||+.+.. +..+.+||...|.||++||||+ |+||+.||+|+
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT--------p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~ 182 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET--------PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIR 182 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC--------cceeecCCccEEEEEEECCCcchhhccccCCeEE
Confidence 445 8899999999999999999999999999999854 4778899999999999999998 89999999999
Q ss_pred EEeCCCccee-eecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCcc
Q 001123 266 IWPWEAIEKA-LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE 343 (1149)
Q Consensus 266 VWdl~t~~~~-~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~ 343 (1149)
+||..++++. ..+..+..++.+++-++-. ..+...+++|++ |++++|||+..|.
T Consensus 183 lwdpktg~~~g~~l~gH~K~It~Lawep~h------------------------l~p~~r~las~skDg~vrIWd~~~~~ 238 (480)
T KOG0271|consen 183 LWDPKTGQQIGRALRGHKKWITALAWEPLH------------------------LVPPCRRLASSSKDGSVRIWDTKLGT 238 (480)
T ss_pred EecCCCCCcccccccCcccceeEEeecccc------------------------cCCCccceecccCCCCEEEEEccCce
Confidence 9999887643 3444555555444221110 112334666654 7899999999999
Q ss_pred EEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEee--c----ccccC
Q 001123 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--K----GGFGD 417 (1149)
Q Consensus 344 ~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~--~----g~~~~ 417 (1149)
++..+.+|...+.++.+-+.+ .+++|+.|...++|. . ..|.+
T Consensus 239 ~~~~lsgHT~~VTCvrwGG~g--------------------------------liySgS~DrtIkvw~a~dG~~~r~lkG 286 (480)
T KOG0271|consen 239 CVRTLSGHTASVTCVRWGGEG--------------------------------LIYSGSQDRTIKVWRALDGKLCRELKG 286 (480)
T ss_pred EEEEeccCccceEEEEEcCCc--------------------------------eEEecCCCceEEEEEccchhHHHhhcc
Confidence 999999999887766654321 123333333333332 1 13344
Q ss_pred CCCceEEEEEc-------------------------------------CCCcEEEEeCCCeEEEEeC--CCCeeEeeecC
Q 001123 418 DNRRTEALTTS-------------------------------------IDGMIWTGGANGLLLQWDP--NGNRLQDFQYL 458 (1149)
Q Consensus 418 ~~~~V~ava~s-------------------------------------~Dg~laSgs~DgtIrlWD~--tG~~l~tl~gH 458 (1149)
|...|+.++.+ ...+++|||.|.++.+|+. .-+++..+.||
T Consensus 287 HahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgH 366 (480)
T KOG0271|consen 287 HAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGH 366 (480)
T ss_pred cchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhch
Confidence 44444444433 1125999999999999999 45799999999
Q ss_pred CccEEEEE--ecCCEEEEeecCcEEEEEe-CCCceeeeeeccCCCeEEEE--ecCCeEEeecCCCceeeeeccCCCCCch
Q 001123 459 PFAVQCLC--TFGSQIWVGYMNGIVQVLD-LEGNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSPGPLDS 533 (1149)
Q Consensus 459 ~~~V~sls--~dG~~LaSGs~DGtIrlWD-~~G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~sp~pld~ 533 (1149)
..-|+.++ +||++|||||.|..|+||| .+|+.+.+|+||-+.|+.++ .|.++|+|+|.|.|+|+|++.+-
T Consensus 367 q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk----- 441 (480)
T KOG0271|consen 367 QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK----- 441 (480)
T ss_pred hhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeee-----
Confidence 99999775 5899999999999999999 56999999999999999999 48999999999999999997641
Q ss_pred hhhhhccccccceeee-eceEEEEEEEEeCCCCC
Q 001123 534 ILCKELAGKEFLYTRM-ENLKILAGTWNVGQGRA 566 (1149)
Q Consensus 534 ~i~~~l~~re~~yt~~-~~~~i~v~TWNv~~~~~ 566 (1149)
...+.-+ ....||..-|-..|++.
T Consensus 442 ---------Kl~~DLpGh~DEVf~vDwspDG~rV 466 (480)
T KOG0271|consen 442 ---------KLKQDLPGHADEVFAVDWSPDGQRV 466 (480)
T ss_pred ---------eecccCCCCCceEEEEEecCCCcee
Confidence 1111111 33478889998776653
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.1e-35 Score=326.51 Aligned_cols=266 Identities=18% Similarity=0.197 Sum_probs=230.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCC---cEEEEECCCcEEEE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG---DLWSGSEGGGIKIW 267 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG---~L~SGS~DgTIRVW 267 (1149)
+.||..+.|+.|+..|||||-+|.+++|++.+.. .+.+|.||++.|.++.|+|.. .|+|||.||+||+|
T Consensus 175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~--------~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw 246 (459)
T KOG0272|consen 175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN--------LLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLW 246 (459)
T ss_pred CCcceeeEeecCCCeEEEeecCCceeEeecCCcc--------eeEEEeccccceeeEEEccCCCccceeeeccCCceeee
Confidence 8899999999999999999999999999998743 478899999999999999973 39999999999999
Q ss_pred eCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEE
Q 001123 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (1149)
Q Consensus 268 dl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~ 346 (1149)
++.+...+..+. +|. ..|..+++.++|..+.+++ |.|-||||++|+..+.
T Consensus 247 ~~~~e~~l~~l~-------------------gH~----------~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL 297 (459)
T KOG0272|consen 247 KLSQETPLQDLE-------------------GHL----------ARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL 297 (459)
T ss_pred ccCCCcchhhhh-------------------cch----------hhheeeeecCCCceeeecccccchhhcccccchhhH
Confidence 997654443332 232 3455678889999998887 5789999999987665
Q ss_pred EEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecc------cccCCCC
Q 001123 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG------GFGDDNR 420 (1149)
Q Consensus 347 ~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g------~~~~~~~ 420 (1149)
...+|. +.+.++.|.++|..+.+|..|..-|+|+.. .|.+|..
T Consensus 298 ~QEGHs-------------------------------~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k 346 (459)
T KOG0272|consen 298 LQEGHS-------------------------------KGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK 346 (459)
T ss_pred hhcccc-------------------------------cccceeEecCCCceeeccCccchhheeecccCcEEEEeccccc
Confidence 444433 455677888999999999999999999843 4689999
Q ss_pred ceEEEEEcCCCc-EEEEeCCCeEEEEeCC-CCeeEeeecCCccEEEEEec---CCEEEEeecCcEEEEEeCC-Cceeeee
Q 001123 421 RTEALTTSIDGM-IWTGGANGLLLQWDPN-GNRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE-GNLLGGW 494 (1149)
Q Consensus 421 ~V~ava~s~Dg~-laSgs~DgtIrlWD~t-G~~l~tl~gH~~~V~sls~d---G~~LaSGs~DGtIrlWD~~-G~~l~~l 494 (1149)
.|.+|.|+|+|+ |||||.|+++||||+. -.++.++.+|.+-|..|.+. |.+|+++++|++++||... ++++++|
T Consensus 347 ~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL 426 (459)
T KOG0272|consen 347 EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL 426 (459)
T ss_pred ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh
Confidence 999999999998 8999999999999994 57899999999999988663 8999999999999999965 8999999
Q ss_pred eccCCCeEEEE--ecCCeEEeecCCCceeeee
Q 001123 495 VAHSSPVIKMA--VGAGYIFTLANHGGIRGWN 524 (1149)
Q Consensus 495 ~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWd 524 (1149)
.||.+.|.++. +|+++++|+|.|+|||+|.
T Consensus 427 aGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 427 AGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999987 6999999999999999996
No 8
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.7e-32 Score=323.52 Aligned_cols=242 Identities=20% Similarity=0.336 Sum_probs=199.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCC-----------------------CCCCCccceEEeecCCCCEEEE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLL-----------------------DSDDGFGEVLSWQAHRGPVLSL 247 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~-----------------------~~~~~~~~~~~l~GH~~~VtsV 247 (1149)
...+.|+.|++|+++||-|-.|..|++|.+....+ .+.+.-....++.||+|||.++
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 45789999999999999999999999999874221 1112333356789999999999
Q ss_pred EEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEE
Q 001123 248 CISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKV 326 (1149)
Q Consensus 248 afSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v 326 (1149)
.|+|+.+ |+|+|+|+|||+|.+.+..+.+..+ ||. ..|-.+.+++-|...
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~-------------------GH~----------~PVwdV~F~P~GyYF 508 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-------------------GHL----------APVWDVQFAPRGYYF 508 (707)
T ss_pred eecccccceeeccCCcceeeeecccceeEEEec-------------------CCC----------cceeeEEecCCceEE
Confidence 9999988 8999999999999998765544332 222 234445567777777
Q ss_pred EEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCc
Q 001123 327 WSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA 405 (1149)
Q Consensus 327 ~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~ 405 (1149)
+|++ |+|.+||....-..++
T Consensus 509 atas~D~tArLWs~d~~~PlR----------------------------------------------------------- 529 (707)
T KOG0263|consen 509 ATASHDQTARLWSTDHNKPLR----------------------------------------------------------- 529 (707)
T ss_pred EecCCCceeeeeecccCCchh-----------------------------------------------------------
Confidence 7776 5688999865422221
Q ss_pred EEEEeecccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEE--ecCCEEEEeecCcEE
Q 001123 406 VRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIV 481 (1149)
Q Consensus 406 v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls--~dG~~LaSGs~DGtI 481 (1149)
.|.+|...|.|+.|+|+.. +++||.|.|||+||+ +|.+++.|.||.++|.+++ ++|++||+|+.||.|
T Consensus 530 --------ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I 601 (707)
T KOG0263|consen 530 --------IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLI 601 (707)
T ss_pred --------hhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcE
Confidence 2677888899999999965 899999999999999 9999999999999999885 479999999999999
Q ss_pred EEEeCC-CceeeeeeccCCCeEEEE--ecCCeEEeecCCCceeeeeccCC
Q 001123 482 QVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSP 528 (1149)
Q Consensus 482 rlWD~~-G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~sp 528 (1149)
.+||+. |+++..+.+|++.|.+|. .||..|++||.|++||+||+..+
T Consensus 602 ~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 602 KIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999986 799999999999999998 59999999999999999998653
No 9
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=8.1e-33 Score=298.36 Aligned_cols=266 Identities=21% Similarity=0.330 Sum_probs=208.1
Q ss_pred EEEeeCCeEEEe-CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeE
Q 001123 137 TIVCTEEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRI 215 (1149)
Q Consensus 137 ~l~~~~~~l~ag-~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtI 215 (1149)
.|..++..+.+| .|+||++||..+.++... ...| +++|+||.| +.++|+|||.|.||
T Consensus 202 ClQYDD~kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GH-tGSVLCLqy--d~rviisGSSDsTv 259 (499)
T KOG0281|consen 202 CLQYDDEKIVSGLRDNTIKIWDKNSLECLKI-------------------LTGH-TGSVLCLQY--DERVIVSGSSDSTV 259 (499)
T ss_pred EEEecchhhhcccccCceEEeccccHHHHHh-------------------hhcC-CCcEEeeec--cceEEEecCCCceE
Confidence 334445666665 499999999988777654 1234 999999999 45799999999999
Q ss_pred EEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccc
Q 001123 216 MCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (1149)
Q Consensus 216 RvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~ 295 (1149)
|+||+++|.+ +.++.+|..+|..+.|+. |.++|+|.|.+|+|||+...... ++ . .
T Consensus 260 rvWDv~tge~--------l~tlihHceaVLhlrf~n-g~mvtcSkDrsiaVWdm~sps~i-t~------r---------r 314 (499)
T KOG0281|consen 260 RVWDVNTGEP--------LNTLIHHCEAVLHLRFSN-GYMVTCSKDRSIAVWDMASPTDI-TL------R---------R 314 (499)
T ss_pred EEEeccCCch--------hhHHhhhcceeEEEEEeC-CEEEEecCCceeEEEeccCchHH-HH------H---------H
Confidence 9999999874 778899999999999996 67899999999999999653210 00 0 0
Q ss_pred cccccccccceeeeecCCeEEEEEcCCCCEEEEe-cCCceEEEEcCCccEEEEEecCCceeeEEeeccCCCcccccccee
Q 001123 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKT 374 (1149)
Q Consensus 296 ~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sa-sd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~ 374 (1149)
.+.||- ..|+.+-++ ...+++| +|.||++|++.|+++++++.+|..-
T Consensus 315 VLvGHr----------AaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRG-------------------- 362 (499)
T KOG0281|consen 315 VLVGHR----------AAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRG-------------------- 362 (499)
T ss_pred HHhhhh----------hheeeeccc--cceEEEecCCceEEEEeccceeeehhhhccccc--------------------
Confidence 122332 223333333 2356665 4789999999999999988765431
Q ss_pred eEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCC-cEEEEeCCCeEEEEeC-CCCee
Q 001123 375 KIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDP-NGNRL 452 (1149)
Q Consensus 375 ~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg-~laSgs~DgtIrlWD~-tG~~l 452 (1149)
+++. -..| .++|||+|.|||+||+ .|.|+
T Consensus 363 --------------IACl-----------------------------------QYr~rlvVSGSSDntIRlwdi~~G~cL 393 (499)
T KOG0281|consen 363 --------------IACL-----------------------------------QYRDRLVVSGSSDNTIRLWDIECGACL 393 (499)
T ss_pred --------------ceeh-----------------------------------hccCeEEEecCCCceEEEEeccccHHH
Confidence 0111 1122 3789999999999999 79999
Q ss_pred EeeecCCccEEEEEecCCEEEEeecCcEEEEEeCC-C---------ceeeeeeccCCCeEEEEecCCeEEeecCCCceee
Q 001123 453 QDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-G---------NLLGGWVAHSSPVIKMAVGAGYIFTLANHGGIRG 522 (1149)
Q Consensus 453 ~tl~gH~~~V~sls~dG~~LaSGs~DGtIrlWD~~-G---------~~l~~l~gH~~~V~sLa~Dg~~LaSgS~DgtIRl 522 (1149)
+.|.||..-|.|+-||.++|+||.+||+|+|||+. + -|+.++..|++.|..+.+|...|+|.+.|.+|-+
T Consensus 394 RvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILi 473 (499)
T KOG0281|consen 394 RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILI 473 (499)
T ss_pred HHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEE
Confidence 99999999999999999999999999999999963 2 1578889999999999999999999999999999
Q ss_pred eeccCCCC
Q 001123 523 WNVTSPGP 530 (1149)
Q Consensus 523 Wdl~sp~p 530 (1149)
||.....|
T Consensus 474 WdFl~~~~ 481 (499)
T KOG0281|consen 474 WDFLNGPP 481 (499)
T ss_pred EEcCCCCc
Confidence 99865444
No 10
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=7.2e-31 Score=306.32 Aligned_cols=362 Identities=19% Similarity=0.204 Sum_probs=259.0
Q ss_pred eEEEEEee-CCeEEE--eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCC--CEEE
Q 001123 134 FLRTIVCT-EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEAS--GVVW 207 (1149)
Q Consensus 134 ~l~~l~~~-~~~l~a--g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg--~~La 207 (1149)
++-.++++ .+.+.| |.|+.|+|||++.+++... +.| .+.|.++.|.|+- .+|+
T Consensus 107 Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~---------------------fkG~gGvVssl~F~~~~~~~lL~ 165 (775)
T KOG0319|consen 107 PVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHS---------------------FKGHGGVVSSLLFHPHWNRWLLA 165 (775)
T ss_pred CeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEE---------------------ecCCCceEEEEEeCCccchhhee
Confidence 34455555 334444 5699999999998887654 345 7889999999874 4699
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceee
Q 001123 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (1149)
Q Consensus 208 SGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~ 286 (1149)
+|..|+++|+||+..+. .++.++++|...|++++|++|+. ++|+|.|..|-|||+.+.++...+...+. +.
T Consensus 166 sg~~D~~v~vwnl~~~~-------tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~-~E 237 (775)
T KOG0319|consen 166 SGATDGTVRVWNLNDKR-------TCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYES-LE 237 (775)
T ss_pred ecCCCceEEEEEcccCc-------hHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhh-ee
Confidence 99999999999998654 25778899999999999999997 89999999999999866443211110000 00
Q ss_pred EEEe------------------------------------------------------------eecc--cccc------
Q 001123 287 ALIV------------------------------------------------------------ERSY--IDLR------ 298 (1149)
Q Consensus 287 a~~~------------------------------------------------------------~~~~--~~l~------ 298 (1149)
++.. +... .+..
T Consensus 238 ~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k 317 (775)
T KOG0319|consen 238 SVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVK 317 (775)
T ss_pred eEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEeh
Confidence 0000 0000 0000
Q ss_pred -------------------ccccccc-------------eeee---ecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCc
Q 001123 299 -------------------SHLSVNG-------------FSSI---LTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR 342 (1149)
Q Consensus 299 -------------------~~~~~~g-------------~~~~---~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG 342 (1149)
.+..++. .|.+ +..-+..+....+|..+++++ |.++++|-++.+
T Consensus 318 ~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~ 397 (775)
T KOG0319|consen 318 QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNN 397 (775)
T ss_pred hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCC
Confidence 0000000 0000 111133343334455677766 678999976443
Q ss_pred c----EEEEEecCCceeeEEeeccCC---CccccccceeeEEecC------------------CCCccceeeeeeccccc
Q 001123 343 E----LLKVFNIDGQIENRVDMSLLP---DFAMEDEFKTKIVTSS------------------KKDKAQSSFGFFQRSRN 397 (1149)
Q Consensus 343 ~----~L~~l~~~g~~~~~v~~S~~~---~~~~~~~~~~~~~s~~------------------~k~~~~~si~f~~~~~~ 397 (1149)
. ++...++|...+..++++... ..+++.+..+++|.-. .|+|.+.++...|....
T Consensus 398 ~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkL 477 (775)
T KOG0319|consen 398 CSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKL 477 (775)
T ss_pred cchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCce
Confidence 3 344456676666666664321 1122333333343322 35677778888888889
Q ss_pred eEeecCCcEEEEee------cccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--
Q 001123 398 AIMGAADAVRRVAA------KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT-- 467 (1149)
Q Consensus 398 ~i~G~~d~v~rv~~------~g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~-- 467 (1149)
+++|+.|...++|. .++|.+|.+.|.+|.|++..+ ++|+|.|+|||||.+ +..|+++|.||..+|.-.+|
T Consensus 478 iAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~ 557 (775)
T KOG0319|consen 478 IATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR 557 (775)
T ss_pred EEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee
Confidence 99999999888886 468899999999999999876 789999999999999 89999999999999997776
Q ss_pred cCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEEEE--ecCCeEEeecCCCceeeee
Q 001123 468 FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWN 524 (1149)
Q Consensus 468 dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWd 524 (1149)
+|++|+|+++||.|+||++. +.|+.++.+|++.|++++ +...+++||+.|+.|-+|.
T Consensus 558 ~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 558 NGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred CCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 79999999999999999986 789999999999999998 5777999999999999996
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.9e-30 Score=283.12 Aligned_cols=333 Identities=18% Similarity=0.222 Sum_probs=250.3
Q ss_pred ccchhhhHHHHHHHhhcccCCCcccccccCCCCCccchhcccCCcCcccccccccccCCCCCccccCCCCccccccc--e
Q 001123 56 TIKRLDYMMEFLERKLSSSATTTNEKKRFASSSSLPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIG--C 133 (1149)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~pl~e~~~~--~ 133 (1149)
+.-|+-=-+.+|+.+|.+.. +|++. |.-+|= .+-|.+-+++|||+-...| .
T Consensus 57 Sv~rlqKki~~Les~l~~~~---------------~el~~-g~pt~~-----------~~~~~~wipRp~l~~~l~g~r~ 109 (406)
T KOG0295|consen 57 SVDRLQKKIRELESKLDETG---------------DELIA-GDPTGS-----------KRTPALWIPRPNLVQKLAGHRS 109 (406)
T ss_pred ccchhHHHHHHHHhhhcccc---------------ccccc-CCCCcC-----------ccChhhcCCCCCchhhhhcccc
Confidence 45556666777777776654 45553 212111 2334445556666664444 3
Q ss_pred eEEEEEee-CCeEEE--eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCCEEEEE
Q 001123 134 FLRTIVCT-EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSG 209 (1149)
Q Consensus 134 ~l~~l~~~-~~~l~a--g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~~LaSG 209 (1149)
.+.-+-.+ ..-+.+ +.|.+|++||..+|...+. +.| +.+|..++|+..|++|||+
T Consensus 110 ~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~---------------------LrGHt~sv~di~~~a~Gk~l~tc 168 (406)
T KOG0295|consen 110 SVTRVIFHPSEALVVSASEDATIKVFDTETGELERS---------------------LRGHTDSVFDISFDASGKYLATC 168 (406)
T ss_pred ceeeeeeccCceEEEEecCCceEEEEEccchhhhhh---------------------hhccccceeEEEEecCccEEEec
Confidence 33333334 223333 4699999999999987543 344 8889999999999999999
Q ss_pred eCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEE
Q 001123 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (1149)
Q Consensus 210 S~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~ 288 (1149)
|.|-.|++||.++- +.++..+.||...|.+|+|-|-|. ++|+|.|.|||.|++.++.+..++.++...
T Consensus 169 SsDl~~~LWd~~~~-------~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ew---- 237 (406)
T KOG0295|consen 169 SSDLSAKLWDFDTF-------FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEW---- 237 (406)
T ss_pred CCccchhheeHHHH-------HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHh----
Confidence 99999999998762 355778899999999999999987 899999999999999999888777655433
Q ss_pred EeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCcc
Q 001123 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (1149)
Q Consensus 289 ~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~ 367 (1149)
++.+....+|..++|++ +.++++|-+.+++|...|..|..++.++.+.+.....
T Consensus 238 -------------------------vr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~ 292 (406)
T KOG0295|consen 238 -------------------------VRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYP 292 (406)
T ss_pred -------------------------EEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCc
Confidence 34445556666677765 5789999999999999999888876555554422211
Q ss_pred ccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCC-cEEEEeCCCeEEEEe
Q 001123 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWD 446 (1149)
Q Consensus 368 ~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg-~laSgs~DgtIrlWD 446 (1149)
.. . -.+|+. ..+ .+.++|.|+|||+||
T Consensus 293 ~i--------------------~-------~at~~~-------------------------~~~~~l~s~SrDktIk~wd 320 (406)
T KOG0295|consen 293 SI--------------------S-------EATGST-------------------------NGGQVLGSGSRDKTIKIWD 320 (406)
T ss_pred ch--------------------h-------hccCCC-------------------------CCccEEEeecccceEEEEe
Confidence 00 0 000100 122 378999999999999
Q ss_pred C-CCCeeEeeecCCccEEEEEec--CCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEEEEe--cCCeEEeecCCCce
Q 001123 447 P-NGNRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGI 520 (1149)
Q Consensus 447 ~-tG~~l~tl~gH~~~V~sls~d--G~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa~--Dg~~LaSgS~DgtI 520 (1149)
+ +|.|+.+|.||..+|..+++. |+||+|...|+++++||+. ++|..++.+|+.-|+++.+ +--+++|||-|.++
T Consensus 321 v~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~ 400 (406)
T KOG0295|consen 321 VSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTV 400 (406)
T ss_pred ccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEecccccee
Confidence 9 899999999999999999886 9999999999999999986 8999999999999999985 44499999999999
Q ss_pred eeee
Q 001123 521 RGWN 524 (1149)
Q Consensus 521 RlWd 524 (1149)
++|.
T Consensus 401 KvwE 404 (406)
T KOG0295|consen 401 KVWE 404 (406)
T ss_pred eeee
Confidence 9995
No 12
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=2.6e-29 Score=267.74 Aligned_cols=265 Identities=17% Similarity=0.208 Sum_probs=215.6
Q ss_pred CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001123 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (1149)
Q Consensus 142 ~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl 220 (1149)
.+.+.+ +.||-+.|||.-|...... -++. ..+|+.+||+|.|..+|.|+-|...-|+++
T Consensus 67 sr~ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~-s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 67 SRRIVSASQDGKLIVWDSFTTNKVHA-------------------IPLP-SSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred cCeEEeeccCCeEEEEEcccccceeE-------------------EecC-ceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 455554 5699999999876554321 1233 789999999999999999999999999999
Q ss_pred CCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeecccccccc
Q 001123 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSH 300 (1149)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~ 300 (1149)
.+..- .........|.||++.+.+..|-+|++|+|||.|.|.-+||++++++...+.+|
T Consensus 127 s~~d~--~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH------------------- 185 (343)
T KOG0286|consen 127 STRDA--EGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGH------------------- 185 (343)
T ss_pred ccccc--cccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCC-------------------
Confidence 86421 111123456899999999999999999999999999999999998876655433
Q ss_pred ccccceeeeecCCeEEEEEcC-CCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEe
Q 001123 301 LSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVT 378 (1149)
Q Consensus 301 ~~~~g~~~~~~~dv~~las~~-~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s 378 (1149)
. +||..+...+ +....+|++ |.+.+|||++.|.+.++|.
T Consensus 186 ~----------gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~----------------------------- 226 (343)
T KOG0286|consen 186 T----------GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFE----------------------------- 226 (343)
T ss_pred c----------ccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeec-----------------------------
Confidence 2 6677777777 566666654 7889999999988777664
Q ss_pred cCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeee
Q 001123 379 SSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQ 456 (1149)
Q Consensus 379 ~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~ 456 (1149)
+|...|++|.|.|+|. +++||.|+++|++|+ ..+.+..+.
T Consensus 227 --------------------------------------ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys 268 (343)
T KOG0286|consen 227 --------------------------------------GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS 268 (343)
T ss_pred --------------------------------------ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec
Confidence 4445677788889987 899999999999999 678888776
Q ss_pred cC--CccEEEEEe--cCCEEEEeecCcEEEEEe-CCCceeeeeeccCCCeEEEE--ecCCeEEeecCCCceeeee
Q 001123 457 YL--PFAVQCLCT--FGSQIWVGYMNGIVQVLD-LEGNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWN 524 (1149)
Q Consensus 457 gH--~~~V~sls~--dG~~LaSGs~DGtIrlWD-~~G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWd 524 (1149)
.. ...|+++++ .|++|.+|+.|.++.||| +.|+.+..|.||...|.+|. +||..++|||+|.++|||.
T Consensus 269 ~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 269 HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 42 246888876 699999999999999999 67999999999999999987 7999999999999999994
No 13
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=7.6e-32 Score=290.88 Aligned_cols=231 Identities=19% Similarity=0.277 Sum_probs=185.7
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~ 270 (1149)
...|+|+.++. ..++||.+|.||++||..+-. +...|.||+|.|.|+.|..- -|+|||.|.||||||++
T Consensus 197 skgVYClQYDD--~kiVSGlrDnTikiWD~n~~~--------c~~~L~GHtGSVLCLqyd~r-viisGSSDsTvrvWDv~ 265 (499)
T KOG0281|consen 197 SKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSLE--------CLKILTGHTGSVLCLQYDER-VIVSGSSDSTVRVWDVN 265 (499)
T ss_pred CCceEEEEecc--hhhhcccccCceEEeccccHH--------HHHhhhcCCCcEEeeeccce-EEEecCCCceEEEEecc
Confidence 45799999954 679999999999999998754 36788999999999988752 37899999999999999
Q ss_pred CcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEec
Q 001123 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNI 350 (1149)
Q Consensus 271 t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~~ 350 (1149)
++++..++- +|. ..|..+.++. +..+.++-|.+|++||+.+-.
T Consensus 266 tge~l~tli---hHc--------------------------eaVLhlrf~n-g~mvtcSkDrsiaVWdm~sps------- 308 (499)
T KOG0281|consen 266 TGEPLNTLI---HHC--------------------------EAVLHLRFSN-GYMVTCSKDRSIAVWDMASPT------- 308 (499)
T ss_pred CCchhhHHh---hhc--------------------------ceeEEEEEeC-CEEEEecCCceeEEEeccCch-------
Confidence 998765442 122 2233444433 334444557899999985310
Q ss_pred CCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCC
Q 001123 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID 430 (1149)
Q Consensus 351 ~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~D 430 (1149)
.+ .+ ...+.+|...|+.|.|+..
T Consensus 309 --~i--------------------------------------------------t~-----rrVLvGHrAaVNvVdfd~k 331 (499)
T KOG0281|consen 309 --DI--------------------------------------------------TL-----RRVLVGHRAAVNVVDFDDK 331 (499)
T ss_pred --HH--------------------------------------------------HH-----HHHHhhhhhheeeeccccc
Confidence 00 00 0124555555666655433
Q ss_pred CcEEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEecCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEEEEecC
Q 001123 431 GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGA 508 (1149)
Q Consensus 431 g~laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa~Dg 508 (1149)
.|+|+|.|.|||+|++ ++++++++.||...|.|+-+.|++++|||+|.+||+||++ |.|++.|.||..-|.++.+|.
T Consensus 332 -yIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~ 410 (499)
T KOG0281|consen 332 -YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN 410 (499)
T ss_pred -eEEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC
Confidence 7999999999999999 8999999999999999999999999999999999999998 999999999999999999999
Q ss_pred CeEEeecCCCceeeeeccC
Q 001123 509 GYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 509 ~~LaSgS~DgtIRlWdl~s 527 (1149)
+.|+||++||+||+||+..
T Consensus 411 krIVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 411 KRIVSGAYDGKIKVWDLQA 429 (499)
T ss_pred ceeeeccccceEEEEeccc
Confidence 9999999999999999965
No 14
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.2e-29 Score=281.13 Aligned_cols=255 Identities=15% Similarity=0.179 Sum_probs=211.8
Q ss_pred CCeEEEe-CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCC--CCEEEEEeCCCeEEE
Q 001123 142 EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEA--SGVVWSGHRDGRIMC 217 (1149)
Q Consensus 142 ~~~l~ag-~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~d--g~~LaSGS~DGtIRv 217 (1149)
.+.+.+| -+|.++||+..+...... +.| ++.|.++.|.|. +..||||+.||+||+
T Consensus 187 s~~laT~swsG~~kvW~~~~~~~~~~---------------------l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvkl 245 (459)
T KOG0272|consen 187 SKHLATGSWSGLVKVWSVPQCNLLQT---------------------LRGHTSRVGAAVFHPVDSDLNLATASADGTVKL 245 (459)
T ss_pred CCeEEEeecCCceeEeecCCcceeEE---------------------EeccccceeeEEEccCCCccceeeeccCCceee
Confidence 4444444 499999999887643322 334 889999999997 679999999999999
Q ss_pred EECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeecccc
Q 001123 218 WKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (1149)
Q Consensus 218 Wdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~ 296 (1149)
|++++.. ++..|.||...|..|+|+|+|+ |.|+|.|.|-|+||++++...+..
T Consensus 246 w~~~~e~--------~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q------------------ 299 (459)
T KOG0272|consen 246 WKLSQET--------PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ------------------ 299 (459)
T ss_pred eccCCCc--------chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh------------------
Confidence 9998743 4778999999999999999999 899999999999999886543321
Q ss_pred ccccccccceeeeecCCeEEEEEcCCCCEEEEecC-CceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceee
Q 001123 297 LRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375 (1149)
Q Consensus 297 l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd-~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~ 375 (1149)
+||. ..|-.+++.++|..+++++- ..-||||++||.++-.|.+|...
T Consensus 300 -EGHs----------~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~--------------------- 347 (459)
T KOG0272|consen 300 -EGHS----------KGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKE--------------------- 347 (459)
T ss_pred -cccc----------cccceeEecCCCceeeccCccchhheeecccCcEEEEecccccc---------------------
Confidence 2232 44667889999999999884 45799999999999998876544
Q ss_pred EEecCCCCccceeeeeeccccceEeecCCcEEEEeec------ccccCCCCceEEEEEcC-CCc-EEEEeCCCeEEEEeC
Q 001123 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDDNRRTEALTTSI-DGM-IWTGGANGLLLQWDP 447 (1149)
Q Consensus 376 ~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~------g~~~~~~~~V~ava~s~-Dg~-laSgs~DgtIrlWD~ 447 (1149)
+-++.|+|.|.++++|+.|+..++|+. .+...|..-|..|.++| .|+ |+|+|.|++++||..
T Consensus 348 ----------I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 348 ----------ILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred ----------eeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecC
Confidence 335577778888999999999999983 35678888999999998 465 899999999999999
Q ss_pred -CCCeeEeeecCCccEEEE--EecCCEEEEeecCcEEEEEe
Q 001123 448 -NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLD 485 (1149)
Q Consensus 448 -tG~~l~tl~gH~~~V~sl--s~dG~~LaSGs~DGtIrlWD 485 (1149)
++.++++|.||.+.|.++ ++||++|++++.|.+|++|.
T Consensus 418 ~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 418 RTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 789999999999999988 56899999999999999995
No 15
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.3e-28 Score=287.46 Aligned_cols=110 Identities=25% Similarity=0.390 Sum_probs=92.1
Q ss_pred EEEeeCCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeE
Q 001123 137 TIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRI 215 (1149)
Q Consensus 137 ~l~~~~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtI 215 (1149)
.|.+++..|++ +...-+|+|+++++...+.+ . ..| .+||.-++|+|.|.+|++|+.||.|
T Consensus 69 ~l~~d~~~L~~a~rs~llrv~~L~tgk~irsw-----------------K-a~H-e~Pvi~ma~~~~g~LlAtggaD~~v 129 (775)
T KOG0319|consen 69 ALTPDEEVLVTASRSQLLRVWSLPTGKLIRSW-----------------K-AIH-EAPVITMAFDPTGTLLATGGADGRV 129 (775)
T ss_pred eecCCccEEEEeeccceEEEEEcccchHhHhH-----------------h-hcc-CCCeEEEEEcCCCceEEeccccceE
Confidence 34555667765 44566999999999877651 1 134 8899999999999999999999999
Q ss_pred EEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc---EEEEECCCcEEEEeCCCcc
Q 001123 216 MCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD---LWSGSEGGGIKIWPWEAIE 273 (1149)
Q Consensus 216 RvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~---L~SGS~DgTIRVWdl~t~~ 273 (1149)
+|||+..+.| ...|+||.|.|.++.|.|+-. |+||+.|++||+||+.+..
T Consensus 130 ~VWdi~~~~~--------th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~ 182 (775)
T KOG0319|consen 130 KVWDIKNGYC--------THSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKR 182 (775)
T ss_pred EEEEeeCCEE--------EEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCc
Confidence 9999998765 889999999999999999864 6899999999999998643
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=2.8e-28 Score=254.80 Aligned_cols=258 Identities=16% Similarity=0.225 Sum_probs=200.2
Q ss_pred EeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCC
Q 001123 147 AGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLD 226 (1149)
Q Consensus 147 ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~ 226 (1149)
||.|.|||+|.+.+|.|.++ +. |-.+.|+.|.+.||++.||.|+.- .||++|+.++.-
T Consensus 16 A~YDhTIRfWqa~tG~C~rT-----------------iq---h~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np- 73 (311)
T KOG0315|consen 16 AGYDHTIRFWQALTGICSRT-----------------IQ---HPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNP- 73 (311)
T ss_pred ccCcceeeeeehhcCeEEEE-----------------Ee---cCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCC-
Confidence 36799999999999998875 11 115689999999999999988764 799999998651
Q ss_pred CCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccc
Q 001123 227 SDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNG 305 (1149)
Q Consensus 227 ~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g 305 (1149)
.++.++.||+.-|++|.|.-||+ ++|||+|||+||||+....+...+ .
T Consensus 74 -----~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~--------------------~------ 122 (311)
T KOG0315|consen 74 -----NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY--------------------Q------ 122 (311)
T ss_pred -----CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc--------------------c------
Confidence 36889999999999999999999 899999999999999763221111 0
Q ss_pred eeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCc
Q 001123 306 FSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDK 384 (1149)
Q Consensus 306 ~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~ 384 (1149)
+.+.|++++..+...-|.++. ++.|++||+.+..|...+-+
T Consensus 123 ----~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP---------------------------------- 164 (311)
T KOG0315|consen 123 ----HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP---------------------------------- 164 (311)
T ss_pred ----CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC----------------------------------
Confidence 114456666666655566554 46799999987554433321
Q ss_pred cceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CC------CeeEeee
Q 001123 385 AQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NG------NRLQDFQ 456 (1149)
Q Consensus 385 ~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG------~~l~tl~ 456 (1149)
+....+.++...+||. ++.+..-|+..+|++ ++ +.+..+.
T Consensus 165 --------------------------------e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ 212 (311)
T KOG0315|consen 165 --------------------------------EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQ 212 (311)
T ss_pred --------------------------------CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhee
Confidence 1112345667788887 556666799999999 43 3567788
Q ss_pred cCCccEEEE--EecCCEEEEeecCcEEEEEeCCC--ceeeeeeccCCCeEEEEe--cCCeEEeecCCCceeeeeccC
Q 001123 457 YLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLEG--NLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 457 gH~~~V~sl--s~dG~~LaSGs~DGtIrlWD~~G--~~l~~l~gH~~~V~sLa~--Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
.|+.-+... ++|+++||++|+|.+++||++++ ++-..+.||+.+|+..++ ||+||+|||.|+++|+|++..
T Consensus 213 ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 213 AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSA 289 (311)
T ss_pred cccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccccc
Confidence 898877743 77999999999999999999986 456788999999999884 999999999999999999864
No 17
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=3.2e-27 Score=250.78 Aligned_cols=277 Identities=20% Similarity=0.230 Sum_probs=216.3
Q ss_pred eeec-CCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCc
Q 001123 187 SVKG-VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG 263 (1149)
Q Consensus 187 s~~G-~~~V~~lafs~d-g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgT 263 (1149)
.+.| .++|..++..+. -..|.|+|+|.+|.+|++.... .+.......|.||...|+.++.++||+ .+|||.|++
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd---~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDD---IKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCc---cccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 3445 899999999987 5899999999999999997642 244455778999999999999999998 579999999
Q ss_pred EEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCc
Q 001123 264 IKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR 342 (1149)
Q Consensus 264 IRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG 342 (1149)
+|+||++++++...|. +|. .+|.+++++++...++|++ |.||+|||+..
T Consensus 87 lrlWDl~~g~~t~~f~-------------------GH~----------~dVlsva~s~dn~qivSGSrDkTiklwnt~g- 136 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFV-------------------GHT----------KDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG- 136 (315)
T ss_pred EEEEEecCCcEEEEEE-------------------ecC----------CceEEEEecCCCceeecCCCcceeeeeeecc-
Confidence 9999999887655442 333 6788999999999999987 68999999764
Q ss_pred cEEEEEecC--CceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec------cc
Q 001123 343 ELLKVFNID--GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GG 414 (1149)
Q Consensus 343 ~~L~~l~~~--g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~------g~ 414 (1149)
+|.-+...+ ..++.++.|+|+.+. -.++.++.|...++|+. ..
T Consensus 137 ~ck~t~~~~~~~~WVscvrfsP~~~~-----------------------------p~Ivs~s~DktvKvWnl~~~~l~~~ 187 (315)
T KOG0279|consen 137 VCKYTIHEDSHREWVSCVRFSPNESN-----------------------------PIIVSASWDKTVKVWNLRNCQLRTT 187 (315)
T ss_pred cEEEEEecCCCcCcEEEEEEcCCCCC-----------------------------cEEEEccCCceEEEEccCCcchhhc
Confidence 455555444 456667777765432 12456677888888873 36
Q ss_pred ccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEecC-CEEEEeecCcEEEEEeCC-Cce
Q 001123 415 FGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFG-SQIWVGYMNGIVQVLDLE-GNL 490 (1149)
Q Consensus 415 ~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~dG-~~LaSGs~DGtIrlWD~~-G~~ 490 (1149)
|.+|...++++++||||. +++|+.||.+.+||+ .|+++.++. |...|++++|.. ++...+..+..|+|||++ +.+
T Consensus 188 ~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 188 FIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAV 266 (315)
T ss_pred cccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEeccchhh
Confidence 789999999999999998 579999999999999 799999884 678999999864 444455556669999987 555
Q ss_pred eeeee----cc---CCCeEE--EE--ecCCeEEeecCCCceeeeecc
Q 001123 491 LGGWV----AH---SSPVIK--MA--VGAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 491 l~~l~----gH---~~~V~s--La--~Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
+..+. |- .+.+.+ +| .||+.|++|-.|+.||+|.+.
T Consensus 267 v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 267 VEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 54443 22 224444 44 489999999999999999875
No 18
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=1.1e-27 Score=282.88 Aligned_cols=271 Identities=20% Similarity=0.306 Sum_probs=208.5
Q ss_pred CCCCCccccCCCCccc----------------------cccceeEEEEEee-----------CCeEEE-e-CCCCEEEEe
Q 001123 113 PARPPSLEVKPHPLRE----------------------TQIGCFLRTIVCT-----------EEQLWA-G-GENGLRVWN 157 (1149)
Q Consensus 113 ~~~p~~l~~~~~pl~e----------------------~~~~~~l~~l~~~-----------~~~l~a-g-~D~tVrvWd 157 (1149)
|+.|+.-.+|+||++. .....|+.|..-+ +..++| | .|..|++|.
T Consensus 327 ~~~ps~d~iPlPp~~~~d~~~~~~~l~d~~kr~~l~~~~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~S 406 (707)
T KOG0263|consen 327 PNAPSRDRIPLPPLKQVDKLAELEALKDEQKRVKLGRNSLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWS 406 (707)
T ss_pred cCCCccccCCCCcccchhHHHHHHHHHHHHHHhhcCCCCCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEe
Confidence 3356777777887766 1223455554433 445555 3 388899999
Q ss_pred CCCCCCC--------Ccc--ccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCC
Q 001123 158 LKELYDE--------SES--DSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLD 226 (1149)
Q Consensus 158 ~~~g~~~--------~~~--~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~ 226 (1149)
+...+.. ..+ .+.++..+..|.........+-| .+||..+.|+|+.++|+|+|.|++||+|++.+..|
T Consensus 407 l~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~- 485 (707)
T KOG0263|consen 407 LTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC- 485 (707)
T ss_pred cchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeeccccee-
Confidence 8743211 110 00011113445555555555556 99999999999999999999999999999998654
Q ss_pred CCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccc
Q 001123 227 SDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNG 305 (1149)
Q Consensus 227 ~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g 305 (1149)
.-..+||..||+.|.|+|.|. ++|||.|+|.|+|......+...+ .+|.
T Consensus 486 -------~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif-------------------aghl---- 535 (707)
T KOG0263|consen 486 -------LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF-------------------AGHL---- 535 (707)
T ss_pred -------EEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhh-------------------cccc----
Confidence 667899999999999999997 899999999999998654332211 1232
Q ss_pred eeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCc
Q 001123 306 FSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDK 384 (1149)
Q Consensus 306 ~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~ 384 (1149)
+|+.|+.+.++...+++++ |.|+|+||+.+|..++.|
T Consensus 536 ------sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF------------------------------------ 573 (707)
T KOG0263|consen 536 ------SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF------------------------------------ 573 (707)
T ss_pred ------cccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe------------------------------------
Confidence 7899999999999999876 679999999998766554
Q ss_pred cceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccE
Q 001123 385 AQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAV 462 (1149)
Q Consensus 385 ~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V 462 (1149)
.||..+|.+|++||+|. |+||+.||.|++||+ +|+.+..+.+|++.|
T Consensus 574 -------------------------------~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti 622 (707)
T KOG0263|consen 574 -------------------------------TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTI 622 (707)
T ss_pred -------------------------------cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCce
Confidence 45666788899999997 899999999999999 889999999999999
Q ss_pred EEEEe--cCCEEEEeecCcEEEEEeCC
Q 001123 463 QCLCT--FGSQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 463 ~sls~--dG~~LaSGs~DGtIrlWD~~ 487 (1149)
+++++ +|..||+|+.|.+|++||+.
T Consensus 623 ~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 623 YSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred eEEEEecCCCEEEecCCCCeEEEEEch
Confidence 99966 79999999999999999964
No 19
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.6e-28 Score=263.27 Aligned_cols=233 Identities=20% Similarity=0.277 Sum_probs=196.2
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
..+|..+-|.|+-.++++++.|++|++||..+|++ ...|+||+++|.+|+|+..|+ |+|+|.|-.|++||.
T Consensus 108 r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~--------e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 108 RSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL--------ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred ccceeeeeeccCceEEEEecCCceEEEEEccchhh--------hhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence 78999999999999999999999999999999874 567899999999999999998 799999999999999
Q ss_pred CCc-ceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEE
Q 001123 270 EAI-EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (1149)
Q Consensus 270 ~t~-~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~ 347 (1149)
++. ++...+..++ .-+.++++-+.+..|.|++ |.+|+.||+.||.|+++
T Consensus 180 ~~~~~c~ks~~gh~-----------------------------h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t 230 (406)
T KOG0295|consen 180 DTFFRCIKSLIGHE-----------------------------HGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKT 230 (406)
T ss_pred HHHHHHHHHhcCcc-----------------------------cceeeEEEEecCCeeeecccccceeEEecccceeEEe
Confidence 762 3322222221 2244555556667788876 67999999999999999
Q ss_pred EecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEE
Q 001123 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (1149)
Q Consensus 348 l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~ 427 (1149)
|.+|.+++ ..+..
T Consensus 231 ~~~h~ewv-------------------------------------------------------------------r~v~v 243 (406)
T KOG0295|consen 231 FPGHSEWV-------------------------------------------------------------------RMVRV 243 (406)
T ss_pred ccCchHhE-------------------------------------------------------------------EEEEe
Confidence 87766542 23345
Q ss_pred cCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe-------c----------CCEEEEeecCcEEEEEeCC-
Q 001123 428 SIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT-------F----------GSQIWVGYMNGIVQVLDLE- 487 (1149)
Q Consensus 428 s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~-------d----------G~~LaSGs~DGtIrlWD~~- 487 (1149)
+.||. ++|++.|.+|++|-+ +++|...++.|..+|-|+++ + |+++.+|+.|++|++||+.
T Consensus 244 ~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t 323 (406)
T KOG0295|consen 244 NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST 323 (406)
T ss_pred cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC
Confidence 67777 579999999999999 89999999999999998853 1 3699999999999999986
Q ss_pred CceeeeeeccCCCeEEEE--ecCCeEEeecCCCceeeeeccC
Q 001123 488 GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 488 G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
|.|+.++.||..+|.+++ +.|+||+|++.|+++|+||+..
T Consensus 324 g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 324 GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKN 365 (406)
T ss_pred CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecc
Confidence 999999999999999999 4799999999999999999865
No 20
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=9.4e-27 Score=260.82 Aligned_cols=256 Identities=16% Similarity=0.241 Sum_probs=195.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
..-|+||+|+.+|..||+|+.||.+|+|+..++. +.+|.-|++||.++.++..|. |+|||-|+|+-+||.
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l---------~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~ 305 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL---------ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDA 305 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCchh---------hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEec
Confidence 4579999999999999999999999999998754 667888999999999999997 899999999999999
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEe
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~ 349 (1149)
.+++.-..+.-++. +.-||.+. .....+.+..++.|+++-+.-.++.
T Consensus 306 ~~g~~~q~f~~~s~--------------------------~~lDVdW~---~~~~F~ts~td~~i~V~kv~~~~P~---- 352 (524)
T KOG0273|consen 306 HTGTVKQQFEFHSA--------------------------PALDVDWQ---SNDEFATSSTDGCIHVCKVGEDRPV---- 352 (524)
T ss_pred cCceEEEeeeeccC--------------------------CccceEEe---cCceEeecCCCceEEEEEecCCCcc----
Confidence 77654333321110 00112221 1111222223444555543221111
Q ss_pred cCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcC
Q 001123 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (1149)
Q Consensus 350 ~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~ 429 (1149)
.+|.+|...|.++.+.|
T Consensus 353 ---------------------------------------------------------------~t~~GH~g~V~alk~n~ 369 (524)
T KOG0273|consen 353 ---------------------------------------------------------------KTFIGHHGEVNALKWNP 369 (524)
T ss_pred ---------------------------------------------------------------eeeecccCceEEEEECC
Confidence 23667888889999999
Q ss_pred CCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--c---------CCEEEEeecCcEEEEEeCC-Cceeeeee
Q 001123 430 DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--F---------GSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (1149)
Q Consensus 430 Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--d---------G~~LaSGs~DGtIrlWD~~-G~~l~~l~ 495 (1149)
.|. |+|+|.|+|+|||++ .+.+...|.+|...|+++.. + |..|++++.|++|++||++ |.++.+|.
T Consensus 370 tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~ 449 (524)
T KOG0273|consen 370 TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM 449 (524)
T ss_pred CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec
Confidence 988 679999999999998 78999999999999998853 2 5799999999999999976 99999999
Q ss_pred ccCCCeEEEE--ecCCeEEeecCCCceeeeeccCCCCCchhhhhhccccccceeeeeceEEEEEEEEeCCCC
Q 001123 496 AHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGR 565 (1149)
Q Consensus 496 gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~sp~pld~~i~~~l~~re~~yt~~~~~~i~v~TWNv~~~~ 565 (1149)
.|+.+|++|+ ++|+|+|||+.||.|.+|+..+. .+. -+....--||-..||.++.+
T Consensus 450 kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~----~l~----------~s~~~~~~Ifel~Wn~~G~k 507 (524)
T KOG0273|consen 450 KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG----KLV----------KSYQGTGGIFELCWNAAGDK 507 (524)
T ss_pred cCCCceEEEEecCCCcEEEecCCCCeeEeccccch----hee----------EeecCCCeEEEEEEcCCCCE
Confidence 9999999999 58999999999999999996431 111 11122335899999998643
No 21
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.3e-26 Score=277.80 Aligned_cols=263 Identities=24% Similarity=0.341 Sum_probs=211.1
Q ss_pred CCeEEE-eCCCCEEEEeCCCCC--CCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 001123 142 EEQLWA-GGENGLRVWNLKELY--DESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCW 218 (1149)
Q Consensus 142 ~~~l~a-g~D~tVrvWd~~~g~--~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvW 218 (1149)
++.+.+ +.|+.+++|+..++. .... + ..| ...|.+++|+|+|++|+||+.|++||+|
T Consensus 171 g~~l~~~~~~~~i~~~~~~~~~~~~~~~-----------------l--~~h-~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 171 GRALAAASSDGLIRIWKLEGIKSNLLRE-----------------L--SGH-TRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred CCeEEEccCCCcEEEeecccccchhhcc-----------------c--ccc-ccceeeeEECCCCcEEEEecCCceEEEe
Confidence 445554 469999999996655 2221 0 123 7899999999999999999999999999
Q ss_pred ECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccc
Q 001123 219 KMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (1149)
Q Consensus 219 dl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l 297 (1149)
|+.... ....+++||...|++++|+|+|+ ++|||.|++|||||+.++++...+..
T Consensus 231 d~~~~~-------~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~----------------- 286 (456)
T KOG0266|consen 231 DLKDDG-------RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKG----------------- 286 (456)
T ss_pred eccCCC-------eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeec-----------------
Confidence 994321 34788999999999999999997 78999999999999988765544432
Q ss_pred cccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccE--EEEEecCCceeeEEeeccCCCcccccccee
Q 001123 298 RSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL--LKVFNIDGQIENRVDMSLLPDFAMEDEFKT 374 (1149)
Q Consensus 298 ~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~--L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~ 374 (1149)
| ++.+..++++.++..+++++ |+.|++||+.+++. ++.+..+..
T Consensus 287 --h----------s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~--------------------- 333 (456)
T KOG0266|consen 287 --H----------SDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAEN--------------------- 333 (456)
T ss_pred --c----------CCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCC---------------------
Confidence 2 25677888999999999887 67899999999883 343321110
Q ss_pred eEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCee
Q 001123 375 KIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRL 452 (1149)
Q Consensus 375 ~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l 452 (1149)
.. .+..+.++|++. +++++.|+++++||+ .+.++
T Consensus 334 -------------------------------------------~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 334 -------------------------------------------SA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV 369 (456)
T ss_pred -------------------------------------------CC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcce
Confidence 11 355677899987 889999999999999 68999
Q ss_pred EeeecCCccEEEE-----EecCCEEEEeecCcEEEEEeCC-Cceeeeeecc-CCCeEEEE--ecCCeEEeec--CCCcee
Q 001123 453 QDFQYLPFAVQCL-----CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH-SSPVIKMA--VGAGYIFTLA--NHGGIR 521 (1149)
Q Consensus 453 ~tl~gH~~~V~sl-----s~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH-~~~V~sLa--~Dg~~LaSgS--~DgtIR 521 (1149)
+++.+|...++|+ ...|+++++|+.|+.|++||.. +..+..+.+| ...|..++ +...++++++ .|+.|+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~ 449 (456)
T KOG0266|consen 370 GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIR 449 (456)
T ss_pred eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEE
Confidence 9999999876666 2258999999999999999987 7888999999 88888877 5788999988 799999
Q ss_pred eeec
Q 001123 522 GWNV 525 (1149)
Q Consensus 522 lWdl 525 (1149)
+|..
T Consensus 450 ~w~~ 453 (456)
T KOG0266|consen 450 LWKY 453 (456)
T ss_pred EecC
Confidence 9974
No 22
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=2.7e-26 Score=267.88 Aligned_cols=365 Identities=16% Similarity=0.136 Sum_probs=255.4
Q ss_pred eEEEEEee-CCeEEE-e-CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEe
Q 001123 134 FLRTIVCT-EEQLWA-G-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (1149)
Q Consensus 134 ~l~~l~~~-~~~l~a-g-~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS 210 (1149)
....+... +..+.| | +||.||+|+..+.... +...+| ..+|+++.|+..|.+|+|||
T Consensus 67 evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~-------------------~tfngH-K~AVt~l~fd~~G~rlaSGs 126 (888)
T KOG0306|consen 67 EVTCLRSSDDILLLAVGYADGSVQIFSLESEEIL-------------------ITFNGH-KAAVTTLKFDKIGTRLASGS 126 (888)
T ss_pred eEEEeeccCCcceEEEEecCceEEeeccCCCcee-------------------eeeccc-ccceEEEEEcccCceEeecC
Confidence 44444554 344444 6 5999999998754322 333345 89999999999999999999
Q ss_pred CCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEE
Q 001123 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (1149)
Q Consensus 211 ~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~ 289 (1149)
.|+.|.+||+-+..+ ...|+||++.|+.+-|..+.. |+|.|.|++||+||+++..+..+.-.+..-..+++
T Consensus 127 kDt~IIvwDlV~E~G--------l~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~ 198 (888)
T KOG0306|consen 127 KDTDIIVWDLVGEEG--------LFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALV 198 (888)
T ss_pred CCccEEEEEecccee--------eEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEE
Confidence 999999999976542 678999999999999998444 78999999999999988554211111100000000
Q ss_pred ee--------------------------------------------------------e----cc----c----------
Q 001123 290 VE--------------------------------------------------------R----SY----I---------- 295 (1149)
Q Consensus 290 ~~--------------------------------------------------------~----~~----~---------- 295 (1149)
+. | .+ +
T Consensus 199 ~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E 278 (888)
T KOG0306|consen 199 LDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEE 278 (888)
T ss_pred EecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHH
Confidence 00 0 00 0
Q ss_pred ------------------------------------------------c--cccccc-------ccceee----------
Q 001123 296 ------------------------------------------------D--LRSHLS-------VNGFSS---------- 308 (1149)
Q Consensus 296 ------------------------------------------------~--l~~~~~-------~~g~~~---------- 308 (1149)
+ ..++.. .+.++.
T Consensus 279 ~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~ 358 (888)
T KOG0306|consen 279 IAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTS 358 (888)
T ss_pred HHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCC
Confidence 0 000000 000000
Q ss_pred ------------eecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEecC-------------------------
Q 001123 309 ------------ILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNID------------------------- 351 (1149)
Q Consensus 309 ------------~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~~~------------------------- 351 (1149)
-+-.+|+.++++.+...++|++.++|++|+..|.+|++++...
T Consensus 359 p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~v 438 (888)
T KOG0306|consen 359 PEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQV 438 (888)
T ss_pred ccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEE
Confidence 0224578888888888888999999999999999999987421
Q ss_pred ---------------CceeeEEeeccCCCcc--ccccceeeEEe-----c---CC-C------------Cccceeeeeec
Q 001123 352 ---------------GQIENRVDMSLLPDFA--MEDEFKTKIVT-----S---SK-K------------DKAQSSFGFFQ 393 (1149)
Q Consensus 352 ---------------g~~~~~v~~S~~~~~~--~~~~~~~~~~s-----~---~~-k------------~~~~~si~f~~ 393 (1149)
...++++..++++... ...+-.+++|+ . +. + +..+.++.++|
T Consensus 439 fdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp 518 (888)
T KOG0306|consen 439 FDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP 518 (888)
T ss_pred EEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC
Confidence 1112233333332221 11111222221 1 00 0 12234667788
Q ss_pred cccceEeecCCcEEEEeec------ccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEE
Q 001123 394 RSRNAIMGAADAVRRVAAK------GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL 465 (1149)
Q Consensus 394 ~~~~~i~G~~d~v~rv~~~------g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sl 465 (1149)
+++.++++--|....+... -.+-||.-+|.++-+|||+. +++||.|.+|++|-+ =|.|-+.|.+|.++|.++
T Consensus 519 dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V 598 (888)
T KOG0306|consen 519 DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSV 598 (888)
T ss_pred CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEE
Confidence 8888888887777666542 24568999999999999987 689999999999999 599999999999999999
Q ss_pred Ee--cCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEEEE--ecCCeEEeecCCCceeeeecc
Q 001123 466 CT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 466 s~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
.+ ....+.+++.|+.|+-||-+ -.+++.+.||...|++++ ++|.+++|+|.|.+||+|.-.
T Consensus 599 ~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 599 QFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred EEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 76 45688999999999999966 678999999999999998 699999999999999999854
No 23
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=5.6e-27 Score=250.95 Aligned_cols=264 Identities=19% Similarity=0.225 Sum_probs=214.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
.+.|+++.|+|+|.++|||+.|..|-+|++.+.. +....++||+++|..+.|.+|+. |+|+|.|++|+.||+
T Consensus 47 ~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc-------eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 47 KGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC-------ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred cceEEEEEECCCCCeEeecCCcceEEEEeccccc-------cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 8999999999999999999999999999987533 34567889999999999999997 899999999999999
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCC-CEEEEec-CCceEEEEcCCccEEEE
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTRELLKV 347 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~-~~v~Sas-d~tIrLWD~~TG~~L~~ 347 (1149)
+++++...+..+...+.++ .-..-+ .+|.|++ |+|+||||+++.+++++
T Consensus 120 ~tG~~~rk~k~h~~~vNs~-----------------------------~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t 170 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSL-----------------------------DPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT 170 (338)
T ss_pred ccceeeehhccccceeeec-----------------------------CccccCCeEEEecCCCceEEEEeecccchhhc
Confidence 9998877766554443322 101111 2344555 47899999999998888
Q ss_pred EecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec------ccccCCCCc
Q 001123 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDDNRR 421 (1149)
Q Consensus 348 l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~------g~~~~~~~~ 421 (1149)
+....+. .+++|.+.+.++++|.-|+...+|+. ..+.+|...
T Consensus 171 ~~~kyql--------------------------------tAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~Dt 218 (338)
T KOG0265|consen 171 FENKYQL--------------------------------TAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADT 218 (338)
T ss_pred cccceeE--------------------------------EEEEecccccceeeccccCceeeeccccCcceEEeecccCc
Confidence 7543332 34567777777888888887778763 367899999
Q ss_pred eEEEEEcCCCc-EEEEeCCCeEEEEeCC----C-CeeEeeecCCc--cEEEE----EecCCEEEEeecCcEEEEEeCCC-
Q 001123 422 TEALTTSIDGM-IWTGGANGLLLQWDPN----G-NRLQDFQYLPF--AVQCL----CTFGSQIWVGYMNGIVQVLDLEG- 488 (1149)
Q Consensus 422 V~ava~s~Dg~-laSgs~DgtIrlWD~t----G-~~l~tl~gH~~--~V~sl----s~dG~~LaSGs~DGtIrlWD~~G- 488 (1149)
|..+..+++|. +.+-+.|.++++||+. + .|+..+.+|.. .++.+ +++++++.+|+.|..+++||..+
T Consensus 219 It~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 219 ITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred eeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc
Confidence 99999999986 8899999999999992 3 67999998654 44544 45799999999999999999875
Q ss_pred ceeeeeeccCCCeEEEEe--cCCeEEeecCCCceee
Q 001123 489 NLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRG 522 (1149)
Q Consensus 489 ~~l~~l~gH~~~V~sLa~--Dg~~LaSgS~DgtIRl 522 (1149)
+++..|.||.+.|+.+++ ....|.|++.|++|.+
T Consensus 299 ~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 299 RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 789999999999999994 6678999999999976
No 24
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=9.3e-27 Score=280.31 Aligned_cols=269 Identities=20% Similarity=0.286 Sum_probs=219.5
Q ss_pred EeeCCeEEEeC-CCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCCEEEEEeCCCeEE
Q 001123 139 VCTEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRDGRIM 216 (1149)
Q Consensus 139 ~~~~~~l~ag~-D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~~LaSGS~DGtIR 216 (1149)
..+.+.+.+++ |++|++||..+++...+ .+.| .+.|.++++..-+..|+|||.|.++|
T Consensus 215 q~~~~~~~~~s~~~tl~~~~~~~~~~i~~--------------------~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~r 274 (537)
T KOG0274|consen 215 QLHDGFFKSGSDDSTLHLWDLNNGYLILT--------------------RLVGHFGGVWGLAFPSGGDKLVSGSTDKTER 274 (537)
T ss_pred eeecCeEEecCCCceeEEeecccceEEEe--------------------eccCCCCCceeEEEecCCCEEEEEecCCcEE
Confidence 33466777764 88899999998887653 1234 88999999988789999999999999
Q ss_pred EEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeecccc
Q 001123 217 CWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (1149)
Q Consensus 217 vWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~ 296 (1149)
+||..+|.| ..++.||.+.|.+|.+-+. .++|||.|.|||||+++++.....+.+
T Consensus 275 vWd~~sg~C--------~~~l~gh~stv~~~~~~~~-~~~sgs~D~tVkVW~v~n~~~l~l~~~---------------- 329 (537)
T KOG0274|consen 275 VWDCSTGEC--------THSLQGHTSSVRCLTIDPF-LLVSGSRDNTVKVWDVTNGACLNLLRG---------------- 329 (537)
T ss_pred eEecCCCcE--------EEEecCCCceEEEEEccCc-eEeeccCCceEEEEeccCcceEEEecc----------------
Confidence 999999876 8889999999999987763 478999999999999987765443322
Q ss_pred ccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceee
Q 001123 297 LRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375 (1149)
Q Consensus 297 l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~ 375 (1149)
|. +.|+++..+ +..+++++ |++|++||+.+++|+++|.+|..
T Consensus 330 ---h~----------~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~---------------------- 372 (537)
T KOG0274|consen 330 ---HT----------GPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG---------------------- 372 (537)
T ss_pred ---cc----------ccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcc----------------------
Confidence 22 456676665 45666654 67899999999999998866543
Q ss_pred EEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCcEEEEeCCCeEEEEeC-CC-CeeE
Q 001123 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NG-NRLQ 453 (1149)
Q Consensus 376 ~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~laSgs~DgtIrlWD~-tG-~~l~ 453 (1149)
+|.++.+.....+++|+.|++|++||+ +. +|+.
T Consensus 373 ---------------------------------------------~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~ 407 (537)
T KOG0274|consen 373 ---------------------------------------------RVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIH 407 (537)
T ss_pred ---------------------------------------------eEEEEEecCcceEEeeeeccceEeecCCchhhhhh
Confidence 333443333346899999999999999 66 7999
Q ss_pred eeecCCccEEEEEecCCEEEEeecCcEEEEEeCC-Cceeeeeec-cCCCeEEEEecCCeEEeecCCCceeeeeccCCCCC
Q 001123 454 DFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA-HSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPL 531 (1149)
Q Consensus 454 tl~gH~~~V~sls~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~g-H~~~V~sLa~Dg~~LaSgS~DgtIRlWdl~sp~pl 531 (1149)
++.+|..-|.++.+.+++|++++.|++|++||.+ ++++.++.+ |.+.|..++.....+++++.|+++++||+.+..+.
T Consensus 408 tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 408 TLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred hhcCCcccccccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchh
Confidence 9999999999999999999999999999999975 999999999 78999999887778999999999999999876665
Q ss_pred chh
Q 001123 532 DSI 534 (1149)
Q Consensus 532 d~~ 534 (1149)
..+
T Consensus 488 ~~l 490 (537)
T KOG0274|consen 488 RTL 490 (537)
T ss_pred hhh
Confidence 544
No 25
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.95 E-value=4.9e-25 Score=249.59 Aligned_cols=351 Identities=15% Similarity=0.178 Sum_probs=255.5
Q ss_pred ccceeEEEEEee-CCeEEE--eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEE
Q 001123 130 QIGCFLRTIVCT-EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV 206 (1149)
Q Consensus 130 ~~~~~l~~l~~~-~~~l~a--g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~L 206 (1149)
.+.+|++.+... ++.+|| |+|+.|.++|=++|..++.+ +. ...| .+.|.+|+|+||++.+
T Consensus 188 ~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l------------~~----~~aH-kGsIfalsWsPDs~~~ 250 (603)
T KOG0318|consen 188 EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGEL------------ED----SDAH-KGSIFALSWSPDSTQF 250 (603)
T ss_pred ccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEe------------cC----CCCc-cccEEEEEECCCCceE
Confidence 466789888887 555665 78999999998887766541 00 1124 7899999999999999
Q ss_pred EEEeCCCeEEEEECCCCCCC-----------------------------------CCCCccceEEeecCCCCEEEEEEeC
Q 001123 207 WSGHRDGRIMCWKMNARLLD-----------------------------------SDDGFGEVLSWQAHRGPVLSLCISS 251 (1149)
Q Consensus 207 aSGS~DGtIRvWdl~~g~~~-----------------------------------~~~~~~~~~~l~GH~~~VtsVafSp 251 (1149)
+|.|.|.++|+||+.+..+. +.........+.||..+|++++.+|
T Consensus 251 ~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~ 330 (603)
T KOG0318|consen 251 LTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP 330 (603)
T ss_pred EEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC
Confidence 99999999999999876640 0112223456789999999999999
Q ss_pred CCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec
Q 001123 252 YGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG 330 (1149)
Q Consensus 252 dG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas 330 (1149)
||+ |+|||.||+|--|+..++.... +.+ +.| ...++.++....+..+.++-
T Consensus 331 d~~~i~SgsyDG~I~~W~~~~g~~~~-~~g-----------------~~h----------~nqI~~~~~~~~~~~~t~g~ 382 (603)
T KOG0318|consen 331 DGKTIYSGSYDGHINSWDSGSGTSDR-LAG-----------------KGH----------TNQIKGMAASESGELFTIGW 382 (603)
T ss_pred CCCEEEeeccCceEEEEecCCccccc-ccc-----------------ccc----------cceEEEEeecCCCcEEEEec
Confidence 998 9999999999999997764321 111 112 25677887777666766777
Q ss_pred CCceEEEEcCCccEEEE--EecCCceeeEEeeccCCCc-cccccceeeEEecCCC------CccceeeeeeccccceEee
Q 001123 331 FLSFALWDARTRELLKV--FNIDGQIENRVDMSLLPDF-AMEDEFKTKIVTSSKK------DKAQSSFGFFQRSRNAIMG 401 (1149)
Q Consensus 331 d~tIrLWD~~TG~~L~~--l~~~g~~~~~v~~S~~~~~-~~~~~~~~~~~s~~~k------~~~~~si~f~~~~~~~i~G 401 (1149)
|+++|+-++..+..-+. ++...|.. .++....... .+...-.+.+++..++ .-....+++.+++..++.|
T Consensus 383 Dd~l~~~~~~~~~~t~~~~~~lg~QP~-~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVG 461 (603)
T KOG0318|consen 383 DDTLRVISLKDNGYTKSEVVKLGSQPK-GLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVG 461 (603)
T ss_pred CCeEEEEecccCcccccceeecCCCce-eEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEe
Confidence 89999998865443322 22233321 1222211111 1111111122332221 1223467788888999999
Q ss_pred cCCcEEEEeec--------ccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCe-eEeeecCCccEEEEEe--c
Q 001123 402 AADAVRRVAAK--------GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNR-LQDFQYLPFAVQCLCT--F 468 (1149)
Q Consensus 402 ~~d~v~rv~~~--------g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~-l~tl~gH~~~V~sls~--d 468 (1149)
..|+..++... +.+..|...+.+|++|||+. ||+|...+.|.+||+ +.+. ...+.-|+..|+|+++ +
T Consensus 462 G~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~ 541 (603)
T KOG0318|consen 462 GQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPN 541 (603)
T ss_pred cccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCC
Confidence 99998887752 24567888999999999997 789999999999999 5544 3455669999999975 6
Q ss_pred CCEEEEeecCcEEEEEeCC--CceeeeeeccCCCeEEEEe-cCCeEEeecCCCceeeeecc
Q 001123 469 GSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAV-GAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 469 G~~LaSGs~DGtIrlWD~~--G~~l~~l~gH~~~V~sLa~-Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
.+++|+||.|-+|.||+++ .+.+....+|...|++|++ |...|+|.+.|..||+|++.
T Consensus 542 n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 542 NKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence 8999999999999999987 5668888899999999995 99999999999999999974
No 26
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=99.94 E-value=1.2e-27 Score=255.39 Aligned_cols=186 Identities=26% Similarity=0.344 Sum_probs=128.2
Q ss_pred ccCcceeEEEEEEeceEEEEeeecccccchhHHH-----------HHHHHHHHHHhcccCCCCCccccccCCCchhhhhh
Q 001123 674 IGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNR-----------RNADFDHVYRTMTFCRPSNLCSAAAGTMPFLLLSC 742 (1149)
Q Consensus 674 ~gNKGaV~ir~~~~~t~lcFVn~HLaA~~~~~~~-----------Rn~d~~~I~~~l~F~~~~~~~~~~~~~~~~~~~s~ 742 (1149)
++-||.+.+|++++++.|||||+||.++..|++. |.++|..|+.++.
T Consensus 65 wSRKGfmrtrw~i~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~---------------------- 122 (356)
T PTZ00312 65 RSRKGFLLLSLRLGTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECS---------------------- 122 (356)
T ss_pred ccccceEEEEEEECCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHh----------------------
Confidence 7899999999999999999999999999887554 4555555554321
Q ss_pred hhhhhhhhhhhhhccCCchhhhhhccccchhhhcccCCCCCCCcccCCCcccCccEEEEECccCCCCCCCChHHHHH---
Q 001123 743 VLACSMYLLWLVYRSGLPLVLYIAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARD--- 819 (1149)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~vfw~GDlNyRi~~~~~~~v~~--- 819 (1149)
..+..+|++|||||||||+++..+.+-..
T Consensus 123 ------------------------------------------------~~~~~~~~lF~fGDfNyRld~~~~~e~L~ek~ 154 (356)
T PTZ00312 123 ------------------------------------------------AFISPSDPLFIFGDFNVRLDGHNLLEWLKEKM 154 (356)
T ss_pred ------------------------------------------------hccCCCCcEEEeccceeeeccccHHHHhcccc
Confidence 11235799999999999999755532211
Q ss_pred ----HHh------hcChHHHHHhhHHHHHhHc-------------CCcCCCCccCCcccCCCcccccccc----------
Q 001123 820 ----FIS------QRCFDWLRERDQLRAEMEA-------------GNVFQGMREADIKFPPTYKFEKHLA---------- 866 (1149)
Q Consensus 820 ----~i~------~~~~~~Ll~~DQL~~~~~~-------------g~~f~gf~E~~I~F~PTYKyd~~~~---------- 866 (1149)
.++ -..|..|+++|||..|++. .+.|.++.|+||+||||||......
T Consensus 155 Ql~ve~~~g~~~~P~hf~~Lf~~dQl~rE~~~fd~e~q~l~~~va~~s~~eLaE~pI~FpPTYkrva~r~~~~~~~~~a~ 234 (356)
T PTZ00312 155 QIDVKIEVKRVRAPDRFWELFTNPQTQGEIRRFDLELQRLMDVVAQQSGVELAEFAIRFPPTYPRVAERTNTGAQIESAG 234 (356)
T ss_pred cccccccccccCChHHHHHHhcChhhhHHHhhhhhhhhhhhhhhhhhcccchhcccccCCCcchhhhhhcCCcchhhhcc
Confidence 011 2458899999999999995 6778899999999999999332100
Q ss_pred ------------------------------CCcc---------------ccCCCCccccccccceeeecCCCccccc---
Q 001123 867 ------------------------------GLAG---------------YDSGEKKRVPAWCDRILYRDSRSDLASE--- 898 (1149)
Q Consensus 867 ------------------------------g~~~---------------yDts~k~R~PsWcDRIL~~~~~~~~~~~--- 898 (1149)
|+.. +-...+.|+|||||||||..........
T Consensus 235 ~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~g~~d~i~~~~~l~~~ta~P~r~~~~~r~pawcdrvl~~~~~~~~~~~~r~ 314 (356)
T PTZ00312 235 ANVAASVYGVKDVAAKLDNQQRKKAAKDLKGTADAILASVVLTRVTAIPHRNYCRDRLPAWCDRVLWNPAGLELMTGDRS 314 (356)
T ss_pred cccccchhcccccccccccccccchhhhccCccceeeeeeeeecccccCCcchhcccchhhhheeeechhhhhhhcCccc
Confidence 0000 0013588999999999998642111000
Q ss_pred -----------cccCCCcccceeeeeeecccccCCCCceeeEE
Q 001123 899 -----------CSLECPVASSILRYEACMDVTDSDHKPVRCIF 930 (1149)
Q Consensus 899 -----------~~~~~p~~~~~~~Y~s~~~~~~SDHkPV~a~f 930 (1149)
..-.+--......|.|. ++..+||.||...|
T Consensus 315 ~~a~~~~~aa~~~~~~~~~~~~~~Y~s~-~L~htDH~~V~~lF 356 (356)
T PTZ00312 315 RSASPQSAAASKGDQASGQSCRYAYRSI-DLIHTDHDGVFLLF 356 (356)
T ss_pred cCCCcchhhhccCCcccchhhhheeeee-eeeeccCccceecC
Confidence 00000001134578874 89999999998876
No 27
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.94 E-value=2.2e-25 Score=233.27 Aligned_cols=265 Identities=17% Similarity=0.221 Sum_probs=201.5
Q ss_pred CccccccceeEEEEEeeCCeEE------------EeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-C
Q 001123 125 PLRETQIGCFLRTIVCTEEQLW------------AGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-V 191 (1149)
Q Consensus 125 pl~e~~~~~~l~~l~~~~~~l~------------ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~ 191 (1149)
-+|+..+|.|.++|...++|+= ++....||++|+.++..-. . .++.| +
T Consensus 23 RfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~P------------------v-~t~e~h~ 83 (311)
T KOG0315|consen 23 RFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNP------------------V-ATFEGHT 83 (311)
T ss_pred eeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCc------------------e-eEEeccC
Confidence 4788999999999988744432 3556679999998766421 1 12345 7
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCC
Q 001123 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (1149)
Q Consensus 192 ~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~ 270 (1149)
..|.++.|..||++++|||.||++||||+..-. +...-.|..+|++|++.|+.. |+||-.+|.|||||+.
T Consensus 84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~---------~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~ 154 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS---------CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLG 154 (311)
T ss_pred CceEEEEEeecCeEEEecCCCceEEEEeccCcc---------cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEcc
Confidence 899999999999999999999999999998733 333345889999999999754 9999999999999997
Q ss_pred CcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecC-CceEEEEcCCccEEEEEe
Q 001123 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFN 349 (1149)
Q Consensus 271 t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd-~tIrLWD~~TG~~L~~l~ 349 (1149)
.-.+...+.++.. ..+..+...++|.+++.+.+ ++..+|++-+++....|.
T Consensus 155 ~~~c~~~liPe~~----------------------------~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~ 206 (311)
T KOG0315|consen 155 ENSCTHELIPEDD----------------------------TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELE 206 (311)
T ss_pred CCccccccCCCCC----------------------------cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccce
Confidence 6544433433321 23556777788888888765 679999986532111110
Q ss_pred cCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcC
Q 001123 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (1149)
Q Consensus 350 ~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~ 429 (1149)
+ ...|..|...+....+||
T Consensus 207 P-------------------------------------------------------------~~k~~ah~~~il~C~lSP 225 (311)
T KOG0315|consen 207 P-------------------------------------------------------------VHKFQAHNGHILRCLLSP 225 (311)
T ss_pred E-------------------------------------------------------------hhheecccceEEEEEECC
Confidence 0 011445556666777999
Q ss_pred CCc-EEEEeCCCeEEEEeCCC--CeeEeeecCCccEEEE--EecCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEE
Q 001123 430 DGM-IWTGGANGLLLQWDPNG--NRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK 503 (1149)
Q Consensus 430 Dg~-laSgs~DgtIrlWD~tG--~~l~tl~gH~~~V~sl--s~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~s 503 (1149)
|++ ||++|+|.|++||+.++ +.-..+++|..+|..- +.||+||++|+.|+++|+||++ |+.++.+.||-..-.+
T Consensus 226 d~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc 305 (311)
T KOG0315|consen 226 DVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVC 305 (311)
T ss_pred CCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEE
Confidence 987 89999999999999965 4446788999999955 4589999999999999999987 8999999999988887
Q ss_pred EEe
Q 001123 504 MAV 506 (1149)
Q Consensus 504 La~ 506 (1149)
++.
T Consensus 306 ~~l 308 (311)
T KOG0315|consen 306 VAL 308 (311)
T ss_pred EEe
Confidence 764
No 28
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=8e-26 Score=248.11 Aligned_cols=298 Identities=18% Similarity=0.252 Sum_probs=210.6
Q ss_pred CCCCccccccceeEEEEEeeCCeEEEeC-CCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEc
Q 001123 122 KPHPLRETQIGCFLRTIVCTEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGD 200 (1149)
Q Consensus 122 ~~~pl~e~~~~~~l~~l~~~~~~l~ag~-D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs 200 (1149)
+|.|+....+.-++..+....+-+++|. ||++|+||.+ |++... ...| +++|.++++-
T Consensus 95 aP~pl~~~~hdDWVSsv~~~~~~IltgsYDg~~riWd~~-Gk~~~~-------------------~~Gh-t~~ik~v~~v 153 (423)
T KOG0313|consen 95 APKPLQCFLHDDWVSSVKGASKWILTGSYDGTSRIWDLK-GKSIKT-------------------IVGH-TGPIKSVAWV 153 (423)
T ss_pred CCCccccccchhhhhhhcccCceEEEeecCCeeEEEecC-CceEEE-------------------EecC-CcceeeeEEE
Confidence 4456666666667777888888888865 9999999987 444322 1233 7888866553
Q ss_pred ---CCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcce-e
Q 001123 201 ---EASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEK-A 275 (1149)
Q Consensus 201 ---~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~-~ 275 (1149)
+....++|||.|.++++|..+.+.. .......-+||.++|-+|...++|. ++|||.|.+|++|+.++.+. .
T Consensus 154 ~~n~~~~~fvsas~Dqtl~Lw~~~~~~~----~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~ 229 (423)
T KOG0313|consen 154 IKNSSSCLFVSASMDQTLRLWKWNVGEN----KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDE 229 (423)
T ss_pred ecCCccceEEEecCCceEEEEEecCchh----hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCcccc
Confidence 3345799999999999999987652 2233334469999999999999997 78999999999999433110 0
Q ss_pred ee-cCCCcc----eeeEEEeeec-cccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEE
Q 001123 276 LS-LKPEER----HTAALIVERS-YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (1149)
Q Consensus 276 ~~-l~~~~~----~~~a~~~~~~-~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l 348 (1149)
+. .....+ .... .-.|. .+.+.+|. ..|..+.+++ ...++|++ |+||+.||+.+|.+..++
T Consensus 230 ~E~~s~~rrk~~~~~~~-~~~r~P~vtl~GHt----------~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~ 297 (423)
T KOG0313|consen 230 LESSSNRRRKKQKREKE-GGTRTPLVTLEGHT----------EPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTL 297 (423)
T ss_pred ccccchhhhhhhhhhhc-ccccCceEEecccc----------cceeeEEEcC-CCceEeecccceEEEEEeecccceeee
Confidence 00 000000 0000 00000 11223333 5677777777 45677766 689999999998876654
Q ss_pred ecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEc
Q 001123 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (1149)
Q Consensus 349 ~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s 428 (1149)
..... ..++..+
T Consensus 298 ~~~ks--------------------------------------------------------------------l~~i~~~ 309 (423)
T KOG0313|consen 298 TTNKS--------------------------------------------------------------------LNCISYS 309 (423)
T ss_pred ecCcc--------------------------------------------------------------------eeEeecc
Confidence 32111 1233344
Q ss_pred CCC-cEEEEeCCCeEEEEeC-C--CC-eeEeeecCCccEEEEEe---cCCEEEEeecCcEEEEEeCC-Cc-eeeeeeccC
Q 001123 429 IDG-MIWTGGANGLLLQWDP-N--GN-RLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE-GN-LLGGWVAHS 498 (1149)
Q Consensus 429 ~Dg-~laSgs~DgtIrlWD~-t--G~-~l~tl~gH~~~V~sls~---dG~~LaSGs~DGtIrlWD~~-G~-~l~~l~gH~ 498 (1149)
+.. .|++||.|..||+||. + |. ..++|.||++.|.++.. +-.+|+||+.|++++|||+. .+ .+..+.+|.
T Consensus 310 ~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~ 389 (423)
T KOG0313|consen 310 PLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHN 389 (423)
T ss_pred cccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCC
Confidence 443 3789999999999999 4 33 46799999999999965 35799999999999999975 44 899999999
Q ss_pred CCeEEEEe-cCCeEEeecCCCceeeee
Q 001123 499 SPVIKMAV-GAGYIFTLANHGGIRGWN 524 (1149)
Q Consensus 499 ~~V~sLa~-Dg~~LaSgS~DgtIRlWd 524 (1149)
+.|.++.+ ++.+|+|||.|++||+..
T Consensus 390 DKvl~vdW~~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 390 DKVLSVDWNEGGLIVSGGADNKLRIFK 416 (423)
T ss_pred ceEEEEeccCCceEEeccCcceEEEec
Confidence 99999995 788999999999999976
No 29
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=4.4e-25 Score=257.88 Aligned_cols=288 Identities=16% Similarity=0.292 Sum_probs=209.7
Q ss_pred CcccccccccccCCCCCccccCCCCccccccceeEEEEEee--CCeEEEeC--CCCEEEEeCCCCCCCCccccccccCCC
Q 001123 101 PMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCT--EEQLWAGG--ENGLRVWNLKELYDESESDSVSVSKSK 176 (1149)
Q Consensus 101 ~~~~~~~~~~~~~~~p~~l~~~~~pl~e~~~~~~l~~l~~~--~~~l~ag~--D~tVrvWd~~~g~~~~~~~~~~~~~~~ 176 (1149)
|+|--|--..+|. |.| .+ ..+.+++.. ++.+.-|. =|.+-||+...-.
T Consensus 290 ~LyelP~f~lih~-----LSi-------s~--~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs-------------- 341 (893)
T KOG0291|consen 290 GLYELPDFNLIHS-----LSI-------SD--QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES-------------- 341 (893)
T ss_pred EEEecCCceEEEE-----eec-------cc--ceeeEEEecccCCEEEEcCCccceEEEEEeeccc--------------
Confidence 4666666666652 222 11 344455554 55554444 3469999975311
Q ss_pred CCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-E
Q 001123 177 GEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L 255 (1149)
Q Consensus 177 ~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L 255 (1149)
.-+....| ...+.|++++|||++||||+.||+|||||...|.| ..+|..|+.+|+++.|+..|+ |
T Consensus 342 -----YVlKQQgH-~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC--------~vTFteHts~Vt~v~f~~~g~~l 407 (893)
T KOG0291|consen 342 -----YVLKQQGH-SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC--------FVTFTEHTSGVTAVQFTARGNVL 407 (893)
T ss_pred -----eeeecccc-ccceeeEEECCCCcEEEeccCCCcEEEEeccCceE--------EEEeccCCCceEEEEEEecCCEE
Confidence 11222223 78899999999999999999999999999999876 889999999999999999998 8
Q ss_pred EEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCC--c
Q 001123 256 WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL--S 333 (1149)
Q Consensus 256 ~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~--t 333 (1149)
+|.|-|||||.||+.....-.+++... .-+..|++.++.|..|..++-+ .
T Consensus 408 lssSLDGtVRAwDlkRYrNfRTft~P~----------------------------p~QfscvavD~sGelV~AG~~d~F~ 459 (893)
T KOG0291|consen 408 LSSSLDGTVRAWDLKRYRNFRTFTSPE----------------------------PIQFSCVAVDPSGELVCAGAQDSFE 459 (893)
T ss_pred EEeecCCeEEeeeecccceeeeecCCC----------------------------ceeeeEEEEcCCCCEEEeeccceEE
Confidence 999999999999997655433332211 1235678888888877766644 4
Q ss_pred eEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecc
Q 001123 334 FALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG 413 (1149)
Q Consensus 334 IrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g 413 (1149)
|.+|+++||+++.+|++|..
T Consensus 460 IfvWS~qTGqllDiLsGHEg------------------------------------------------------------ 479 (893)
T KOG0291|consen 460 IFVWSVQTGQLLDILSGHEG------------------------------------------------------------ 479 (893)
T ss_pred EEEEEeecCeeeehhcCCCC------------------------------------------------------------
Confidence 99999999998877665443
Q ss_pred cccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CC-CeeEeeecCCccEEEEE--ecCCEEEEeecCcEEEEEeCC-
Q 001123 414 GFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NG-NRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE- 487 (1149)
Q Consensus 414 ~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG-~~l~tl~gH~~~V~sls--~dG~~LaSGs~DGtIrlWD~~- 487 (1149)
+|.++.|+|+|. |+|||.|.|||+||+ .. ..+.++. +.+.|.+++ +||+.||++..||.|.+||.+
T Consensus 480 -------PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 480 -------PVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKE 551 (893)
T ss_pred -------cceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhh
Confidence 344566888877 789999999999999 33 3455554 566788775 579999999999999999964
Q ss_pred Cceeeeee----------------c----cCCCeEEEE--ecCCeEEeecCCCceeeeecc
Q 001123 488 GNLLGGWV----------------A----HSSPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 488 G~~l~~l~----------------g----H~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
+..+.+.. + .....++|. +||.+|++||..+.|.++++.
T Consensus 552 ~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~ 612 (893)
T KOG0291|consen 552 AVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVP 612 (893)
T ss_pred ceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECc
Confidence 32221111 1 123455554 799999999999999999975
No 30
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=2.8e-25 Score=266.29 Aligned_cols=237 Identities=21% Similarity=0.332 Sum_probs=197.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
...|.|+.|+++|+.|++++.|++|++|++.++.. .+...+.||...|++++|+|||+ |+||+.|++|||||+
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccc------hhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence 57899999999999999999999999999965431 23556689999999999999997 899999999999999
Q ss_pred CC-cceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEE
Q 001123 270 EA-IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (1149)
Q Consensus 270 ~t-~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~ 347 (1149)
.. +....++ ++|. ..+.++++.+.+.+++|++ |++||+||+++|+++++
T Consensus 233 ~~~~~~~~~l-------------------~gH~----------~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~ 283 (456)
T KOG0266|consen 233 KDDGRNLKTL-------------------KGHS----------TYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRK 283 (456)
T ss_pred cCCCeEEEEe-------------------cCCC----------CceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEe
Confidence 33 3333332 2333 6678889999998888887 57899999999998887
Q ss_pred EecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEE
Q 001123 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (1149)
Q Consensus 348 l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~ 427 (1149)
|.+|. ..|.+++|
T Consensus 284 l~~hs-------------------------------------------------------------------~~is~~~f 296 (456)
T KOG0266|consen 284 LKGHS-------------------------------------------------------------------DGISGLAF 296 (456)
T ss_pred eeccC-------------------------------------------------------------------CceEEEEE
Confidence 76543 33556678
Q ss_pred cCCCc-EEEEeCCCeEEEEeC-CCC--eeEeeecCCcc--EEEEEe--cCCEEEEeecCcEEEEEeCC-CceeeeeeccC
Q 001123 428 SIDGM-IWTGGANGLLLQWDP-NGN--RLQDFQYLPFA--VQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS 498 (1149)
Q Consensus 428 s~Dg~-laSgs~DgtIrlWD~-tG~--~l~tl~gH~~~--V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~ 498 (1149)
++||. |++++.|++|++||+ +|. |+.++.++... ++++.+ +|++|++++.|+++++||+. +.++..+.+|.
T Consensus 297 ~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~ 376 (456)
T KOG0266|consen 297 SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHS 376 (456)
T ss_pred CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccC
Confidence 88887 788999999999999 787 77888887766 777755 79999999999999999987 89999999999
Q ss_pred CCeEEEE-----ecCCeEEeecCCCceeeeeccCCC
Q 001123 499 SPVIKMA-----VGAGYIFTLANHGGIRGWNVTSPG 529 (1149)
Q Consensus 499 ~~V~sLa-----~Dg~~LaSgS~DgtIRlWdl~sp~ 529 (1149)
..+.++. .++++++|++.|+.|++||+.+..
T Consensus 377 ~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 377 NLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG 412 (456)
T ss_pred CcceeEecccccCCCCeEEEEeCCceEEEEeCCccc
Confidence 9765553 489999999999999999987633
No 31
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=7.8e-26 Score=248.21 Aligned_cols=283 Identities=17% Similarity=0.297 Sum_probs=205.0
Q ss_pred eecCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEE-eCCCc---EEEEECCCc
Q 001123 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCI-SSYGD---LWSGSEGGG 263 (1149)
Q Consensus 188 ~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVaf-SpdG~---L~SGS~DgT 263 (1149)
.| ..+|.++... ++.|.||++||++|+||..+ ++..+..||.++|.++++ .++.. ++|||.|.|
T Consensus 103 ~h-dDWVSsv~~~--~~~IltgsYDg~~riWd~~G---------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqt 170 (423)
T KOG0313|consen 103 LH-DDWVSSVKGA--SKWILTGSYDGTSRIWDLKG---------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQT 170 (423)
T ss_pred cc-hhhhhhhccc--CceEEEeecCCeeEEEecCC---------ceEEEEecCCcceeeeEEEecCCccceEEEecCCce
Confidence 44 6778877765 78999999999999999986 458889999999998886 34433 899999999
Q ss_pred EEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecC-CceEEEEcCCc
Q 001123 264 IKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTR 342 (1149)
Q Consensus 264 IRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd-~tIrLWD~~TG 342 (1149)
+++|.++.++....... .-+||. ..|.++....++.++.|++. .++++|+..+-
T Consensus 171 l~Lw~~~~~~~~~~~~~---------------~~~GHk----------~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~ 225 (423)
T KOG0313|consen 171 LRLWKWNVGENKVKALK---------------VCRGHK----------RSVDSVSVDSSGTRFCSGSWDTMLKIWSVETD 225 (423)
T ss_pred EEEEEecCchhhhhHHh---------------Hhcccc----------cceeEEEecCCCCeEEeecccceeeecccCCC
Confidence 99999976543221100 001233 45677888889999999885 56999993321
Q ss_pred cEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCce
Q 001123 343 ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (1149)
Q Consensus 343 ~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V 422 (1149)
....+..... . .+ ...+.++. .+.. ...-++.+|...|
T Consensus 226 -~~~~~E~~s~---------------~--rr----k~~~~~~~--------------~~~r------~P~vtl~GHt~~V 263 (423)
T KOG0313|consen 226 -EEDELESSSN---------------R--RR----KKQKREKE--------------GGTR------TPLVTLEGHTEPV 263 (423)
T ss_pred -ccccccccch---------------h--hh----hhhhhhhc--------------cccc------CceEEecccccce
Confidence 1111110000 0 00 00000000 0000 0112478999999
Q ss_pred EEEEEcCCCcEEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC---Cc-eeeeee
Q 001123 423 EALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE---GN-LLGGWV 495 (1149)
Q Consensus 423 ~ava~s~Dg~laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~---G~-~l~~l~ 495 (1149)
.+|.+++.+.++|+|.|.|||.||+ +|.++.++.+ +..++|++. ..+.||+||.|..|||||-. |. ..++|.
T Consensus 264 s~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~ 342 (423)
T KOG0313|consen 264 SSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLI 342 (423)
T ss_pred eeEEEcCCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeee
Confidence 9999999888999999999999999 8999988876 467888876 46899999999999999943 44 468999
Q ss_pred ccCCCeEEEEe---cCCeEEeecCCCceeeeeccCCC-CCchhhhhhccccccceeeeeceEEEEEEEEeCC
Q 001123 496 AHSSPVIKMAV---GAGYIFTLANHGGIRGWNVTSPG-PLDSILCKELAGKEFLYTRMENLKILAGTWNVGQ 563 (1149)
Q Consensus 496 gH~~~V~sLa~---Dg~~LaSgS~DgtIRlWdl~sp~-pld~~i~~~l~~re~~yt~~~~~~i~v~TWNv~~ 563 (1149)
||+++|.++.. +...++|||.|+++|+||+.++- ||-++... +.||+..+||=++
T Consensus 343 gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h-------------~DKvl~vdW~~~~ 401 (423)
T KOG0313|consen 343 GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH-------------NDKVLSVDWNEGG 401 (423)
T ss_pred cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC-------------CceEEEEeccCCc
Confidence 99999999983 66789999999999999998765 65544332 5699999999653
No 32
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.94 E-value=1.8e-25 Score=243.05 Aligned_cols=269 Identities=19% Similarity=0.221 Sum_probs=210.0
Q ss_pred eec-CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEE
Q 001123 188 VKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (1149)
Q Consensus 188 ~~G-~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIR 265 (1149)
+.| -++|.|++++|.+++++|||.|++|+|||+++|.+ .+++.||-..|..|++|+--- |+|+++|+.||
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L--------kltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL--------KLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE--------EEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 334 89999999999999999999999999999999873 778999999999999998543 89999999999
Q ss_pred EEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccE
Q 001123 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL 344 (1149)
Q Consensus 266 VWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~ 344 (1149)
-||++..+-.... .+|. +.|.|+..-+...++++++ |.++|+||++|...
T Consensus 219 CwDLe~nkvIR~Y-------------------hGHl----------S~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~ 269 (460)
T KOG0285|consen 219 CWDLEYNKVIRHY-------------------HGHL----------SGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS 269 (460)
T ss_pred EEechhhhhHHHh-------------------cccc----------ceeEEEeccccceeEEecCCcceEEEeeecccce
Confidence 9999764422111 1222 3456666666666777765 56899999999999
Q ss_pred EEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec------ccccCC
Q 001123 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDD 418 (1149)
Q Consensus 345 L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~------g~~~~~ 418 (1149)
+.+|.+|...+++|.+. +..-++++|+.|+..++|+. -++..|
T Consensus 270 V~~l~GH~~~V~~V~~~-------------------------------~~dpqvit~S~D~tvrlWDl~agkt~~tlt~h 318 (460)
T KOG0285|consen 270 VHVLSGHTNPVASVMCQ-------------------------------PTDPQVITGSHDSTVRLWDLRAGKTMITLTHH 318 (460)
T ss_pred EEEecCCCCcceeEEee-------------------------------cCCCceEEecCCceEEEeeeccCceeEeeecc
Confidence 99998887665444433 22345678888888888873 256778
Q ss_pred CCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEec-CCEEEEeecCcEEEEEeCC-Cceeeee
Q 001123 419 NRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF-GSQIWVGYMNGIVQVLDLE-GNLLGGW 494 (1149)
Q Consensus 419 ~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~d-G~~LaSGs~DGtIrlWD~~-G~~l~~l 494 (1149)
...|.+++..|... +||+|.| .|+-|++ .|..++.+.+|+.-|++++.+ ..++++|+..|.|..||.+ |-..+.+
T Consensus 319 kksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 319 KKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRG 397 (460)
T ss_pred cceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccc
Confidence 88999999999876 6788877 4999999 899999999999999999874 6799999999999999975 5322222
Q ss_pred ---e--c---cCCCeEEEEe--cCCeEEeecCCCceeeeec
Q 001123 495 ---V--A---HSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 495 ---~--g---H~~~V~sLa~--Dg~~LaSgS~DgtIRlWdl 525 (1149)
. | -...|++..+ .|..|+||..|.+|++|.-
T Consensus 398 ~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 398 QTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred cccccCCccccccceeEEeecccCceEEeccCCcceEEEec
Confidence 1 1 1234555555 5678999999999999974
No 33
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.94 E-value=4.7e-24 Score=230.41 Aligned_cols=266 Identities=21% Similarity=0.321 Sum_probs=209.5
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
.++|.|++|+|++++|++|+.||.|++|++.++. ....+.+|...|.++.|+|+++ |++++.|++|++|++
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE--------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC--------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 7899999999999999999999999999998754 3567889999999999999985 899999999999999
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEE
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l 348 (1149)
.+++....+.. + ...+.++.+.+++..+++++ ++.+++||+.+++.+..+
T Consensus 81 ~~~~~~~~~~~-------------------~----------~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 131 (289)
T cd00200 81 ETGECVRTLTG-------------------H----------TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL 131 (289)
T ss_pred CcccceEEEec-------------------c----------CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe
Confidence 76433222211 1 13466677777777777777 788999999998888877
Q ss_pred ecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec------ccccCCCCce
Q 001123 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDDNRRT 422 (1149)
Q Consensus 349 ~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~------g~~~~~~~~V 422 (1149)
..+...+..+.+++ .+..++++..++..++++. ..+..+...+
T Consensus 132 ~~~~~~i~~~~~~~-------------------------------~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i 180 (289)
T cd00200 132 RGHTDWVNSVAFSP-------------------------------DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV 180 (289)
T ss_pred ccCCCcEEEEEEcC-------------------------------cCCEEEEEcCCCcEEEEEccccccceeEecCcccc
Confidence 65544333333333 3333344443444444431 1344566688
Q ss_pred EEEEEcCCC-cEEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-Cceeeeeecc
Q 001123 423 EALTTSIDG-MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH 497 (1149)
Q Consensus 423 ~ava~s~Dg-~laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH 497 (1149)
.++.+++++ .+++++.|+.|++||+ +++.+..+..|...|.++.+ ++.++++++.||.|++||+. ++.+..+.+|
T Consensus 181 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~ 260 (289)
T cd00200 181 NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH 260 (289)
T ss_pred ceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc
Confidence 999999998 5888888999999999 68889999899999999976 46888888889999999986 7888899999
Q ss_pred CCCeEEEEe--cCCeEEeecCCCceeeee
Q 001123 498 SSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (1149)
Q Consensus 498 ~~~V~sLa~--Dg~~LaSgS~DgtIRlWd 524 (1149)
...|.++++ +++++++++.|+.|++|+
T Consensus 261 ~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 261 TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999984 668999999999999996
No 34
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=1.8e-23 Score=244.56 Aligned_cols=365 Identities=15% Similarity=0.220 Sum_probs=256.1
Q ss_pred CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceee--eec-CCceEEEEEcCCCCEEEEEeCCCeEEE
Q 001123 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKES--VKG-VSSVMCMVGDEASGVVWSGHRDGRIMC 217 (1149)
Q Consensus 142 ~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s--~~G-~~~V~~lafs~dg~~LaSGS~DGtIRv 217 (1149)
++.++| +..+-+.+|-...-.. + .-.||... ..| ...|.++.|+.|.++|++||+|-++|+
T Consensus 107 ng~~fav~~gn~lqiw~~P~~~~-------------~--~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl 171 (893)
T KOG0291|consen 107 NGKFFAVGCGNLLQIWHAPGEIK-------------N--EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARL 171 (893)
T ss_pred CCcEEEEEecceeEEEecCcchh-------------c--ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEE
Confidence 445554 6778899999652211 1 23345421 124 788999999999999999999999999
Q ss_pred EECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeec--CCCcceeeEEEeeecc
Q 001123 218 WKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSL--KPEERHTAALIVERSY 294 (1149)
Q Consensus 218 Wdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l--~~~~~~~~a~~~~~~~ 294 (1149)
|+++..+ + -....|.||+++|-+..|..+.. |+|-|.||.|.+|..........- ..++......-.+..-
T Consensus 172 ~~v~~~k----~--~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~E 245 (893)
T KOG0291|consen 172 FGVDGNK----N--LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGE 245 (893)
T ss_pred EEecccc----c--cceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccch
Confidence 9998643 1 12456899999999999999886 999999999999987632110000 0000000000000000
Q ss_pred ccccccccccc---eeeeecCCeEEEEEcCCCCEEEEe-cCCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccc
Q 001123 295 IDLRSHLSVNG---FSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMED 370 (1149)
Q Consensus 295 ~~l~~~~~~~g---~~~~~~~dv~~las~~~~~~v~Sa-sd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~ 370 (1149)
-....+.+.-. -+.-.+.++.+..+.+....++.+ +.+.+.|+.+-.-.+++.++...+.+..+.+...++..+-.
T Consensus 246 ek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g 325 (893)
T KOG0291|consen 246 EKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFG 325 (893)
T ss_pred hhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEc
Confidence 00000000000 000112566776666655555555 35678899999999999998776666666665433332211
Q ss_pred c-----ceee-------EEecCCCCccceeeeeeccccceEeecCCcEEEEeec------ccccCCCCceEEEEEcCCCc
Q 001123 371 E-----FKTK-------IVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDDNRRTEALTTSIDGM 432 (1149)
Q Consensus 371 ~-----~~~~-------~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~------g~~~~~~~~V~ava~s~Dg~ 432 (1149)
. .-+| ++...+|-....++..+|++..+++|+.|+..++|+. .+|.+|+..|.++.|+..|.
T Consensus 326 ~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~ 405 (893)
T KOG0291|consen 326 CSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN 405 (893)
T ss_pred CCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCC
Confidence 0 0122 2333455566778999999999999999999999973 37899999999999999988
Q ss_pred -EEEEeCCCeEEEEeC-CCCeeEeeecCC-ccEEEEEec--CCEEEEeecCc-EEEEEeCC-CceeeeeeccCCCeEEEE
Q 001123 433 -IWTGGANGLLLQWDP-NGNRLQDFQYLP-FAVQCLCTF--GSQIWVGYMNG-IVQVLDLE-GNLLGGWVAHSSPVIKMA 505 (1149)
Q Consensus 433 -laSgs~DgtIrlWD~-tG~~l~tl~gH~-~~V~sls~d--G~~LaSGs~DG-tIrlWD~~-G~~l~~l~gH~~~V~sLa 505 (1149)
++++|-|||||.||+ .+++-++|+... -...|++.| |..+.+|+.|. .|.||++. |+++..|.||.++|.+|+
T Consensus 406 ~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~ 485 (893)
T KOG0291|consen 406 VLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLS 485 (893)
T ss_pred EEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeE
Confidence 789999999999999 789999998742 234477776 99999999775 79999975 999999999999999877
Q ss_pred --ecCCeEEeecCCCceeeeeccC
Q 001123 506 --VGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 506 --~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
++++.|+|+|+|+|||+||+-.
T Consensus 486 f~~~~~~LaS~SWDkTVRiW~if~ 509 (893)
T KOG0291|consen 486 FSPDGSLLASGSWDKTVRIWDIFS 509 (893)
T ss_pred EccccCeEEeccccceEEEEEeec
Confidence 6999999999999999999854
No 35
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.93 E-value=4.1e-25 Score=266.10 Aligned_cols=233 Identities=20% Similarity=0.321 Sum_probs=191.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEE-eecCCCCEEEEEEeCC-CcEEEEECCCcEEEEe
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLS-WQAHRGPVLSLCISSY-GDLWSGSEGGGIKIWP 268 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~-l~GH~~~VtsVafSpd-G~L~SGS~DgTIRVWd 268 (1149)
...++|..+. ...+++|+.|++|++||..++. .+.+ +.||.+.|++++|..- +.|+|||.|.|+||||
T Consensus 208 ~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~--------~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd 277 (537)
T KOG0274|consen 208 DHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGY--------LILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWD 277 (537)
T ss_pred cchhhhheee--cCeEEecCCCceeEEeecccce--------EEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEe
Confidence 5578899887 5689999999999999998875 3555 9999999999999873 3489999999999999
Q ss_pred CCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEe-cCCceEEEEcCCccEEEE
Q 001123 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKV 347 (1149)
Q Consensus 269 l~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sa-sd~tIrLWD~~TG~~L~~ 347 (1149)
..++++...+.++... +.++. ....++.++ .|.+|++|++.+|.++++
T Consensus 278 ~~sg~C~~~l~gh~st-----------------------------v~~~~--~~~~~~~sgs~D~tVkVW~v~n~~~l~l 326 (537)
T KOG0274|consen 278 CSTGECTHSLQGHTSS-----------------------------VRCLT--IDPFLLVSGSRDNTVKVWDVTNGACLNL 326 (537)
T ss_pred cCCCcEEEEecCCCce-----------------------------EEEEE--ccCceEeeccCCceEEEEeccCcceEEE
Confidence 9999887666433222 22222 222344443 467899999999999998
Q ss_pred EecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEE
Q 001123 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (1149)
Q Consensus 348 l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~ 427 (1149)
+.+|... |.++..
T Consensus 327 ~~~h~~~-------------------------------------------------------------------V~~v~~ 339 (537)
T KOG0274|consen 327 LRGHTGP-------------------------------------------------------------------VNCVQL 339 (537)
T ss_pred ecccccc-------------------------------------------------------------------EEEEEe
Confidence 8654332 233333
Q ss_pred cCCCcEEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEecC-CEEEEeecCcEEEEEeCC-C-ceeeeeeccCCCeEE
Q 001123 428 SIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFG-SQIWVGYMNGIVQVLDLE-G-NLLGGWVAHSSPVIK 503 (1149)
Q Consensus 428 s~Dg~laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~dG-~~LaSGs~DGtIrlWD~~-G-~~l~~l~gH~~~V~s 503 (1149)
. .+.+++|+.|++|++||+ +++|+.++.||..+|+++.+++ .++++|+.|++|++||++ . +|+.++.+|.+-|..
T Consensus 340 ~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~ 418 (537)
T KOG0274|consen 340 D-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSS 418 (537)
T ss_pred c-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccc
Confidence 3 446899999999999999 8999999999999999999999 999999999999999987 4 699999999999999
Q ss_pred EEecCCeEEeecCCCceeeeeccCCCCCc
Q 001123 504 MAVGAGYIFTLANHGGIRGWNVTSPGPLD 532 (1149)
Q Consensus 504 La~Dg~~LaSgS~DgtIRlWdl~sp~pld 532 (1149)
+...++.|+|++.|++||+||+...+.+.
T Consensus 419 l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~ 447 (537)
T KOG0274|consen 419 LLLRDNFLVSSSADGTIKLWDAEEGECLR 447 (537)
T ss_pred cccccceeEeccccccEEEeecccCceee
Confidence 99999999999999999999987655543
No 36
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.93 E-value=7.4e-23 Score=232.02 Aligned_cols=333 Identities=15% Similarity=0.153 Sum_probs=221.8
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEee---cCCCCEEEEEEeCCCc-EEEEECCCcEEE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ---AHRGPVLSLCISSYGD-LWSGSEGGGIKI 266 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~---GH~~~VtsVafSpdG~-L~SGS~DgTIRV 266 (1149)
..=|.|+.|+|||.++||++.||+|.++|-.+|. .+..|. +|+|.|.+|+++||++ ++|+|.|.|+||
T Consensus 190 skFV~~VRysPDG~~Fat~gsDgki~iyDGktge--------~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KI 261 (603)
T KOG0318|consen 190 SKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE--------KVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKI 261 (603)
T ss_pred ccceeeEEECCCCCeEEEecCCccEEEEcCCCcc--------EEEEecCCCCccccEEEEEECCCCceEEEecCCceEEE
Confidence 5679999999999999999999999999987765 245565 8999999999999997 999999999999
Q ss_pred EeCCCcceeeecCCC----c---------ceeeEEEeeecccccc-ccccccceeeeecCCeEEEEEcCCCCEEEEec-C
Q 001123 267 WPWEAIEKALSLKPE----E---------RHTAALIVERSYIDLR-SHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-F 331 (1149)
Q Consensus 267 Wdl~t~~~~~~l~~~----~---------~~~~a~~~~~~~~~l~-~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d 331 (1149)
||+.+.+...++.-. . .++.++++.....-+. ++..+..+..-+.-.+.++..++++..++|++ |
T Consensus 262 WdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD 341 (603)
T KOG0318|consen 262 WDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYD 341 (603)
T ss_pred EEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccC
Confidence 999886543333211 1 1222221111100000 00001111111335588899999999999988 5
Q ss_pred CceEEEEcCCccEEEEE-ecCCceeeEEeeccCCCcc-ccccceeeEEec--CC--CCc------cceeeeeeccccceE
Q 001123 332 LSFALWDARTRELLKVF-NIDGQIENRVDMSLLPDFA-MEDEFKTKIVTS--SK--KDK------AQSSFGFFQRSRNAI 399 (1149)
Q Consensus 332 ~tIrLWD~~TG~~L~~l-~~~g~~~~~v~~S~~~~~~-~~~~~~~~~~s~--~~--k~~------~~~si~f~~~~~~~i 399 (1149)
+.|.-||..+|..-+.. ++|...+.+++.+..++.. ...+-.++..+. .+ +.. ...++....++..++
T Consensus 342 G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~av 421 (603)
T KOG0318|consen 342 GHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAV 421 (603)
T ss_pred ceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEE
Confidence 77999999999876654 4566666666665533322 111112222211 11 100 001222222222333
Q ss_pred eecCCcEEEEeecc-ccc-CCCCceEEEEEcCCCc-EEEEeCCCeEEEEeCCC-Ce--eEeeecCCccEEEEEe--cCCE
Q 001123 400 MGAADAVRRVAAKG-GFG-DDNRRTEALTTSIDGM-IWTGGANGLLLQWDPNG-NR--LQDFQYLPFAVQCLCT--FGSQ 471 (1149)
Q Consensus 400 ~G~~d~v~rv~~~g-~~~-~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~tG-~~--l~tl~gH~~~V~sls~--dG~~ 471 (1149)
....+.+..+.+.. .+. .-.....+++++|++. ++.|+.|+.|.|+.+.| +. -..+..|..+|+++++ ||+|
T Consensus 422 v~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~y 501 (603)
T KOG0318|consen 422 VACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAY 501 (603)
T ss_pred EEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcE
Confidence 33333333333211 111 1123567899999987 78999999999999976 32 2345679999998864 8999
Q ss_pred EEEeecCcEEEEEeCC-Cce-eeeeeccCCCeEEEE--ecCCeEEeecCCCceeeeeccCCCCC
Q 001123 472 IWVGYMNGIVQVLDLE-GNL-LGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSPGPL 531 (1149)
Q Consensus 472 LaSGs~DGtIrlWD~~-G~~-l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~sp~pl 531 (1149)
||+|...+.+-+||++ .+. ...|.-|++.|.+|+ |+.+++||||.|.+|.+|++..|...
T Consensus 502 la~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 502 LAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred EEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh
Confidence 9999999999999987 333 456777999999999 68899999999999999999877553
No 37
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.93 E-value=1.6e-25 Score=247.39 Aligned_cols=264 Identities=22% Similarity=0.241 Sum_probs=208.1
Q ss_pred CCeEEEeC-CCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001123 142 EEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (1149)
Q Consensus 142 ~~~l~ag~-D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl 220 (1149)
+++|.+|+ -|.+-|||.-+-... +..--| .++|.++.++++|.+++||+.||.||.|+.
T Consensus 108 GRRLltgs~SGEFtLWNg~~fnFE-------------------tilQaH-Ds~Vr~m~ws~~g~wmiSgD~gG~iKyWqp 167 (464)
T KOG0284|consen 108 GRRLLTGSQSGEFTLWNGTSFNFE-------------------TILQAH-DSPVRTMKWSHNGTWMISGDKGGMIKYWQP 167 (464)
T ss_pred CceeEeecccccEEEecCceeeHH-------------------HHhhhh-cccceeEEEccCCCEEEEcCCCceEEeccc
Confidence 67888765 555999996321111 111124 789999999999999999999999999998
Q ss_pred CCCCCCCCCCccceEEeecCC-CCEEEEEEeCCC-cEEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeecccccc
Q 001123 221 NARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYG-DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLR 298 (1149)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~GH~-~~VtsVafSpdG-~L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~ 298 (1149)
+-. .++.+++|. ..|++|+|||.. +++|+|+||+|||||..-.+.... ++
T Consensus 168 nmn---------nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~v-------------------L~ 219 (464)
T KOG0284|consen 168 NMN---------NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV-------------------LR 219 (464)
T ss_pred chh---------hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhe-------------------ec
Confidence 752 355667775 999999999954 489999999999999854321111 23
Q ss_pred ccccccceeeeecCCeEEEEEcCCCCEEEEecC-CceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEE
Q 001123 299 SHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIV 377 (1149)
Q Consensus 299 ~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd-~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~ 377 (1149)
+|+ -+++++..-+.-+.|+|++. ..|++||.++|+|+.++.+|.+.
T Consensus 220 GHg----------wdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKnt----------------------- 266 (464)
T KOG0284|consen 220 GHG----------WDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNT----------------------- 266 (464)
T ss_pred cCC----------CCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccce-----------------------
Confidence 454 67888888888889999875 56999999999998776554433
Q ss_pred ecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEee
Q 001123 378 TSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDF 455 (1149)
Q Consensus 378 s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl 455 (1149)
|.++.|++++. |+++|.|..++++|+ +-+.++++
T Consensus 267 --------------------------------------------Vl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 267 --------------------------------------------VLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY 302 (464)
T ss_pred --------------------------------------------EEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh
Confidence 44556777765 899999999999999 67889999
Q ss_pred ecCCccEEEEEe---cCCEEEEeecCcEEEEEeCC-Ccee-eeeeccCCCeEEEE--ecCCeEEeecCCCceeeeeccCC
Q 001123 456 QYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE-GNLL-GGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSP 528 (1149)
Q Consensus 456 ~gH~~~V~sls~---dG~~LaSGs~DGtIrlWD~~-G~~l-~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~sp 528 (1149)
++|...|.++.. .-..+.+|+.||.|..|.+. .+.+ ..-.+|...|++|+ |=|..|+|||.|.++|+|.-..|
T Consensus 303 r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 303 RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred hcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence 999999999964 46899999999999999976 3433 44459999999999 67899999999999999986655
Q ss_pred CC
Q 001123 529 GP 530 (1149)
Q Consensus 529 ~p 530 (1149)
+.
T Consensus 383 ~d 384 (464)
T KOG0284|consen 383 GD 384 (464)
T ss_pred CC
Confidence 54
No 38
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.93 E-value=1.7e-23 Score=267.57 Aligned_cols=273 Identities=14% Similarity=0.110 Sum_probs=202.7
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCC-Cc-EEEEECCCcEEEEe
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GD-LWSGSEGGGIKIWP 268 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpd-G~-L~SGS~DgTIRVWd 268 (1149)
.+.|.+++|+++|.+||||+.|++|++|++............+...+. |...|.+++|++. +. |+||+.||+|+|||
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEE
Confidence 678999999999999999999999999998642100000001223344 4568999999885 33 89999999999999
Q ss_pred CCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcC-CCCEEEEec-CCceEEEEcCCccEEE
Q 001123 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLK 346 (1149)
Q Consensus 269 l~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~-~~~~v~Sas-d~tIrLWD~~TG~~L~ 346 (1149)
+.+++....+. +|. ..|.++++.+ ++..+++++ |++|++||+++++++.
T Consensus 562 ~~~~~~~~~~~-------------------~H~----------~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~ 612 (793)
T PLN00181 562 VARSQLVTEMK-------------------EHE----------KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG 612 (793)
T ss_pred CCCCeEEEEec-------------------CCC----------CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence 98765433222 122 4577778875 566777776 6789999999999888
Q ss_pred EEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeee-ccccceEeecCCcEEEEeecc-------cccCC
Q 001123 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFF-QRSRNAIMGAADAVRRVAAKG-------GFGDD 418 (1149)
Q Consensus 347 ~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~-~~~~~~i~G~~d~v~rv~~~g-------~~~~~ 418 (1149)
++..+..+ . ++.|. +.+..+++|+.|+..++|+.. .+.+|
T Consensus 613 ~~~~~~~v-~-------------------------------~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h 660 (793)
T PLN00181 613 TIKTKANI-C-------------------------------CVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGH 660 (793)
T ss_pred EEecCCCe-E-------------------------------EEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCC
Confidence 77644322 1 12232 234566778888877777631 34578
Q ss_pred CCceEEEEEcCCCcEEEEeCCCeEEEEeC-C------CCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-C
Q 001123 419 NRRTEALTTSIDGMIWTGGANGLLLQWDP-N------GNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-G 488 (1149)
Q Consensus 419 ~~~V~ava~s~Dg~laSgs~DgtIrlWD~-t------G~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G 488 (1149)
...|.++.+.++..+++|+.|++|++||+ . +.++.++.+|...++++++ +|++||+|+.||+|++|+.. +
T Consensus 661 ~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 661 SKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 88899999986677999999999999998 3 2678999999998887755 68999999999999999964 3
Q ss_pred ceeee-------------eeccCCCeEEEE--ecCCeEEeecCCCceeeeec
Q 001123 489 NLLGG-------------WVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 489 ~~l~~-------------l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl 525 (1149)
..+.. ...|...|.+++ +++.+|++|+.||+|++|++
T Consensus 741 ~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 741 MPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 32211 234566788888 48889999999999999986
No 39
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.93 E-value=5e-24 Score=226.60 Aligned_cols=257 Identities=17% Similarity=0.220 Sum_probs=189.3
Q ss_pred eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCC
Q 001123 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLD 226 (1149)
Q Consensus 148 g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~ 226 (1149)
+.|+++-+|++.... ... |. + ...+.| ..-|.-++.++||.+.+|||.|+++|+||+++|.
T Consensus 35 srDk~ii~W~L~~dd-~~~----G~----------~-~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~-- 96 (315)
T KOG0279|consen 35 SRDKTIIVWKLTSDD-IKY----GV----------P-VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE-- 96 (315)
T ss_pred ccceEEEEEEeccCc-ccc----Cc----------e-eeeeeccceEecceEEccCCceEEeccccceEEEEEecCCc--
Confidence 569999999987431 110 00 0 111233 6688999999999999999999999999999976
Q ss_pred CCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccc
Q 001123 227 SDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNG 305 (1149)
Q Consensus 227 ~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g 305 (1149)
..+.|.||..-|.+|+|++|++ ++|||.|+||++|++-+. +..+...+.
T Consensus 97 ------~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~----------------------- 146 (315)
T KOG0279|consen 97 ------STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDS----------------------- 146 (315)
T ss_pred ------EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCC-----------------------
Confidence 3778999999999999999986 999999999999998543 223222111
Q ss_pred eeeeecCCeEEEEEcCC--CCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCC
Q 001123 306 FSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKK 382 (1149)
Q Consensus 306 ~~~~~~~dv~~las~~~--~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k 382 (1149)
...-|.|+.+.|. .-.+++++ |+++|+||+++-++...|.+|...++.+.+|+++
T Consensus 147 ----~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDG------------------ 204 (315)
T KOG0279|consen 147 ----HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDG------------------ 204 (315)
T ss_pred ----CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCC------------------
Confidence 0134677777776 45677776 6899999999999999998887776666655544
Q ss_pred CccceeeeeeccccceEeecCCcEEEEeecc-----cccCCCCceEEEEEcCCCcEEEEeCCCeEEEEeC-CCCeeEeee
Q 001123 383 DKAQSSFGFFQRSRNAIMGAADAVRRVAAKG-----GFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQ 456 (1149)
Q Consensus 383 ~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g-----~~~~~~~~V~ava~s~Dg~laSgs~DgtIrlWD~-tG~~l~tl~ 456 (1149)
...+.|..||...+|+.. ...++...|.+++|+|+...+.+..+..|+|||+ ++.++.++.
T Consensus 205 -------------slcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~ 271 (315)
T KOG0279|consen 205 -------------SLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELK 271 (315)
T ss_pred -------------CEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcc
Confidence 344455566666666522 2346778899999999998666666777999999 677776664
Q ss_pred c----C---CccEEEE--E--ecCCEEEEeecCcEEEEEeCC
Q 001123 457 Y----L---PFAVQCL--C--TFGSQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 457 g----H---~~~V~sl--s--~dG~~LaSGs~DGtIrlWD~~ 487 (1149)
- . ...+.|+ + .||+.|.+|..|+.||+|.+.
T Consensus 272 ~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 272 LDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 3 2 1234455 3 369999999999999999863
No 40
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.93 E-value=8.9e-24 Score=231.32 Aligned_cols=293 Identities=15% Similarity=0.165 Sum_probs=204.4
Q ss_pred eecCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEE
Q 001123 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKI 266 (1149)
Q Consensus 188 ~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRV 266 (1149)
.| +++|.|++.+|+..+++||+.|...-+|++.+|. ....+.||++.|+++.||.||. |+||..+|.|+|
T Consensus 62 ~H-~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge--------~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 62 KH-TDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE--------FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred hc-CCceEEEEeCCCCceEEecCCCceEEEEEccCCc--------ceeEecCCCCceEEEEEccCceEEEecCCCccEEE
Confidence 45 8999999999999999999999999999999875 3677899999999999999998 789999999999
Q ss_pred EeCCCcceeeecCCCcceeeEEEeeeccccccccccccc-----e--eeee-----------cCCeEEEEEcCCCCEEEE
Q 001123 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNG-----F--SSIL-----------TSDIKNLLSDHSRAKVWS 328 (1149)
Q Consensus 267 Wdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g-----~--~~~~-----------~~dv~~las~~~~~~v~S 328 (1149)
|...++.....+..+...+.=+ + |-.+++.-.+| + +.++ +..+.+=.+.++|.++.+
T Consensus 133 ~~~stg~~~~~~~~e~~dieWl---~--WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQEVEDIEWL---K--WHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILT 207 (399)
T ss_pred EEcccCceEEEeecccCceEEE---E--ecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEE
Confidence 9999876554442111100000 0 00111111111 1 1122 233444445677888887
Q ss_pred ec-CCceEEEEcCCccEEEEEecCCcee-eEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcE
Q 001123 329 AG-FLSFALWDARTRELLKVFNIDGQIE-NRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAV 406 (1149)
Q Consensus 329 as-d~tIrLWD~~TG~~L~~l~~~g~~~-~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v 406 (1149)
+. |++|++||+.||+.+.+++...+.. ..+.+.. .+..++.|+.++.
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~-------------------------------~~~~~~~g~~e~~ 256 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNL-------------------------------AGSTLTKGNSEGV 256 (399)
T ss_pred EecCceEEEEecCCCceeEEecccccCcCCcccccc-------------------------------ccceeEeccCCcc
Confidence 65 6889999999999999887433221 0111111 1111122222221
Q ss_pred -----------EEEee---cccccCCCCceEEEEEcC---CCc-EEEEeCCCeEEEEeCCCCeeEeeecCCccEEEEEec
Q 001123 407 -----------RRVAA---KGGFGDDNRRTEALTTSI---DGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTF 468 (1149)
Q Consensus 407 -----------~rv~~---~g~~~~~~~~V~ava~s~---Dg~-laSgs~DgtIrlWD~tG~~l~tl~gH~~~V~sls~d 468 (1149)
..... ......+...+++|.+.| .=. .|.|+.||+|-|||.....+|..-.|...|..+.+.
T Consensus 257 ~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~ 336 (399)
T KOG0296|consen 257 ACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWL 336 (399)
T ss_pred EEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEc
Confidence 11111 001223334455555444 322 468999999999999666667667799999999887
Q ss_pred C-CEEEEeecCcEEEEEeC-CCceeeeeeccCCCeEEEE--ecCCeEEeecCCCceeeeec
Q 001123 469 G-SQIWVGYMNGIVQVLDL-EGNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 469 G-~~LaSGs~DGtIrlWD~-~G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl 525 (1149)
+ .+|++++.+|+||.||. +|+++.++.||+..|..++ ++.++++|+|.|++.+++++
T Consensus 337 ~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 337 NTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred CcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 7 89999999999999995 5999999999999999987 79999999999999999975
No 41
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.9e-25 Score=255.30 Aligned_cols=279 Identities=21% Similarity=0.292 Sum_probs=202.7
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcc
Q 001123 196 CMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE 273 (1149)
Q Consensus 196 ~lafs~-dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~ 273 (1149)
++..|+ .+++|+||++||.||+|++..... ...-..+.+++.|.++|+.+++..+|+ |+|+|.|.|||+|+...+.
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~--~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSN--EPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccC--CcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc
Confidence 455564 456799999999999999876431 000012567899999999999999996 9999999999999985432
Q ss_pred eeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEE-cCCCCEEEEec-CCceEEEEcCCcc--EEEEEe
Q 001123 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS-DHSRAKVWSAG-FLSFALWDARTRE--LLKVFN 349 (1149)
Q Consensus 274 ~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las-~~~~~~v~Sas-d~tIrLWD~~TG~--~L~~l~ 349 (1149)
.. ++. .++.|. ..|+|++. ..+..+++||+ |+.|.|||+++|. ++.+++
T Consensus 107 -~~-------c~s---------tir~H~----------DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n 159 (735)
T KOG0308|consen 107 -TF-------CMS---------TIRTHK----------DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN 159 (735)
T ss_pred -ch-------hHh---------hhhccc----------chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc
Confidence 01 111 122333 77899998 67777888887 6789999999873 332221
Q ss_pred cCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcC
Q 001123 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (1149)
Q Consensus 350 ~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~ 429 (1149)
- + ... .+ ..++...|.+++..+
T Consensus 160 ~---~-----------------------t~~----------------sl----------------~sG~k~siYSLA~N~ 181 (735)
T KOG0308|consen 160 N---V-----------------------TVN----------------SL----------------GSGPKDSIYSLAMNQ 181 (735)
T ss_pred c---c-----------------------ccc----------------cC----------------CCCCccceeeeecCC
Confidence 0 0 000 00 114455677888888
Q ss_pred CCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEEE
Q 001123 430 DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKM 504 (1149)
Q Consensus 430 Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sL 504 (1149)
.|. +++|+..+.+++||. +++.+..|.||+..|.++-. ||++++|||+||+|||||+. .+|++++..|...|+++
T Consensus 182 t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL 261 (735)
T KOG0308|consen 182 TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWAL 261 (735)
T ss_pred cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEE
Confidence 887 678999999999999 89999999999999998854 79999999999999999997 67999999999999999
Q ss_pred E--ecCCeEEeecCCCceeeeeccCCCCCchhhhhhccccccceeeeeceEEEEEEEEeC
Q 001123 505 A--VGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVG 562 (1149)
Q Consensus 505 a--~Dg~~LaSgS~DgtIRlWdl~sp~pld~~i~~~l~~re~~yt~~~~~~i~v~TWNv~ 562 (1149)
. ++-+.+++|+.|+.|..=|+..|...--+ .++-............-.+++.||+-.
T Consensus 262 ~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tli-ck~daPv~~l~~~~~~~~~WvtTtds~ 320 (735)
T KOG0308|consen 262 QSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLI-CKEDAPVLKLHLHEHDNSVWVTTTDSS 320 (735)
T ss_pred eeCCCcceEEecCCCCcEEecccCCchhheEe-ecCCCchhhhhhccccCCceeeecccc
Confidence 8 46678999999999999998876332111 111111111122223335689999743
No 42
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.93 E-value=1.6e-23 Score=223.80 Aligned_cols=242 Identities=18% Similarity=0.256 Sum_probs=189.9
Q ss_pred eec-CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEE
Q 001123 188 VKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (1149)
Q Consensus 188 ~~G-~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIR 265 (1149)
+.| .+.|+|+.|++|+++|+|+|.||++.|||.-+.. ..+.+.--..+|...||+|.|+ ++.|+-|...-
T Consensus 51 LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn--------K~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTN--------KVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred ecccccceeeeEecCCcCeEEeeccCCeEEEEEccccc--------ceeEEecCceeEEEEEECCCCCeEEecCcCceeE
Confidence 445 8899999999999999999999999999987754 1333444578999999999998 68999999999
Q ss_pred EEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEE
Q 001123 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELL 345 (1149)
Q Consensus 266 VWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L 345 (1149)
|+++.+..... . ..+ -..+.+|. +.+.+.-+-+++..|.+++|.|..+||+++|+.+
T Consensus 123 iy~ls~~d~~g-------~-~~v-----~r~l~gHt----------gylScC~f~dD~~ilT~SGD~TCalWDie~g~~~ 179 (343)
T KOG0286|consen 123 IYPLSTRDAEG-------N-VRV-----SRELAGHT----------GYLSCCRFLDDNHILTGSGDMTCALWDIETGQQT 179 (343)
T ss_pred EEecccccccc-------c-cee-----eeeecCcc----------ceeEEEEEcCCCceEecCCCceEEEEEcccceEE
Confidence 99997532110 0 000 01122333 5566666666666666778899999999999887
Q ss_pred EEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEE
Q 001123 346 KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEAL 425 (1149)
Q Consensus 346 ~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~av 425 (1149)
..|.+| ...|-++
T Consensus 180 ~~f~GH-------------------------------------------------------------------~gDV~sl 192 (343)
T KOG0286|consen 180 QVFHGH-------------------------------------------------------------------TGDVMSL 192 (343)
T ss_pred EEecCC-------------------------------------------------------------------cccEEEE
Confidence 766544 3445556
Q ss_pred EEcC-CCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-Cceeeeeecc--
Q 001123 426 TTSI-DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH-- 497 (1149)
Q Consensus 426 a~s~-Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH-- 497 (1149)
.++| ++. ++||+.|++.+|||+ .|.|+|+|.||...|+++.+ +|.-+++||.|++.|++|+. .+.+..+..-
T Consensus 193 sl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~ 272 (343)
T KOG0286|consen 193 SLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSI 272 (343)
T ss_pred ecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcc
Confidence 6667 554 789999999999999 89999999999999999976 79999999999999999976 6666666522
Q ss_pred CCCeEEEEe--cCCeEEeecCCCceeeeeccC
Q 001123 498 SSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 498 ~~~V~sLa~--Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
..+|+++++ .|++|+.|..|.++.+||...
T Consensus 273 ~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk 304 (343)
T KOG0286|consen 273 ICGITSVAFSKSGRLLFAGYDDFTCNVWDTLK 304 (343)
T ss_pred cCCceeEEEcccccEEEeeecCCceeEeeccc
Confidence 347888884 899999999999999999754
No 43
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.3e-24 Score=236.82 Aligned_cols=272 Identities=14% Similarity=0.148 Sum_probs=202.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
+..|.=+.||++|++|||||+|.+..+|++... ..++...++.||..+|.-+.||||.+ |++|+.|..+++||+
T Consensus 224 tdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d-----~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv 298 (519)
T KOG0293|consen 224 TDEVWFLQFSHNGKYLASASKDSTAIIWIVVYD-----VHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDV 298 (519)
T ss_pred CCcEEEEEEcCCCeeEeeccCCceEEEEEEecC-----cceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccC
Confidence 788999999999999999999999999998652 23566788999999999999999987 999999999999999
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEE
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l 348 (1149)
.+|........ +++ ..+.+.+..+++..+++++ |++|..||+. |+.+...
T Consensus 299 ~tgd~~~~y~~------------------~~~----------~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W 349 (519)
T KOG0293|consen 299 DTGDLRHLYPS------------------GLG----------FSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNW 349 (519)
T ss_pred Ccchhhhhccc------------------CcC----------CCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcc
Confidence 98875332210 000 2245567778888777765 6889999975 3333322
Q ss_pred ecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec-----ccccCCCCceE
Q 001123 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK-----GGFGDDNRRTE 423 (1149)
Q Consensus 349 ~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~-----g~~~~~~~~V~ 423 (1149)
.+-. ...+..++..++++.++.-..|...++.+. ..+......+.
T Consensus 350 ~gvr------------------------------~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~it 399 (519)
T KOG0293|consen 350 EGVR------------------------------DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPIT 399 (519)
T ss_pred cccc------------------------------cceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCcee
Confidence 2100 001112233344444433334444444331 12445567889
Q ss_pred EEEEcCCCcE-EEEeCCCeEEEEeC-CCCeeEeeecCCccEEEE--Ee---cCCEEEEeecCcEEEEEeCC-Cceeeeee
Q 001123 424 ALTTSIDGMI-WTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CT---FGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (1149)
Q Consensus 424 ava~s~Dg~l-aSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sl--s~---dG~~LaSGs~DGtIrlWD~~-G~~l~~l~ 495 (1149)
++.+|.||.+ ++.=.+..|.+||+ +...++.+.||...-.-| +| +.+++||||.|+.|+||+.. |+++.+|.
T Consensus 400 s~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls 479 (519)
T KOG0293|consen 400 SFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS 479 (519)
T ss_pred EEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec
Confidence 9999999985 46778999999999 667889999998775555 23 34899999999999999965 99999999
Q ss_pred ccCCCeEEEEe---cCCeEEeecCCCceeeeecc
Q 001123 496 AHSSPVIKMAV---GAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 496 gH~~~V~sLa~---Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
||+..|++|+. |+.++||||.|||||+|-..
T Consensus 480 GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 480 GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 99999999993 78899999999999999754
No 44
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.92 E-value=7.9e-24 Score=230.41 Aligned_cols=267 Identities=15% Similarity=0.301 Sum_probs=199.8
Q ss_pred cceeEEEEEee-CCeEEE--eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCCEE
Q 001123 131 IGCFLRTIVCT-EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVV 206 (1149)
Q Consensus 131 ~~~~l~~l~~~-~~~l~a--g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~~L 206 (1149)
+--++|+++.+ .++.|+ +.|+|+++||+++|...-+ +.| ...|..+++|+--.+|
T Consensus 150 HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lklt---------------------ltGhi~~vr~vavS~rHpYl 208 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLT---------------------LTGHIETVRGVAVSKRHPYL 208 (460)
T ss_pred ccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEe---------------------ecchhheeeeeeecccCceE
Confidence 45678888888 677776 3599999999999886543 334 6788899999999999
Q ss_pred EEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCccee
Q 001123 207 WSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (1149)
Q Consensus 207 aSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~ 285 (1149)
+|++.|+.||.||++..+ .++...||-.+|.++++.|.-. |+|||.|.||||||+.+......+.++.
T Consensus 209 Fs~gedk~VKCwDLe~nk--------vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~--- 277 (460)
T KOG0285|consen 209 FSAGEDKQVKCWDLEYNK--------VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHT--- 277 (460)
T ss_pred EEecCCCeeEEEechhhh--------hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCC---
Confidence 999999999999999754 3677889999999999999765 8999999999999998866555444332
Q ss_pred eEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCC
Q 001123 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (1149)
Q Consensus 286 ~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~ 364 (1149)
..|..+.+.+-+..|++++ |.||+|||++.|+...++..|...+.++...|..
T Consensus 278 --------------------------~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e 331 (460)
T KOG0285|consen 278 --------------------------NPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKE 331 (460)
T ss_pred --------------------------CcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCch
Confidence 3344444544445566665 7899999999999988888776655444444322
Q ss_pred CccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEee-----cccccCCCCceEEEEEcCCCcEEEEeCC
Q 001123 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-----KGGFGDDNRRTEALTTSIDGMIWTGGAN 439 (1149)
Q Consensus 365 ~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~-----~g~~~~~~~~V~ava~s~Dg~laSgs~D 439 (1149)
. ..++++.|.+..+.. ...+.+|..-+.+++...||.+++|+.+
T Consensus 332 ~-------------------------------~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dn 380 (460)
T KOG0285|consen 332 N-------------------------------LFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDN 380 (460)
T ss_pred h-------------------------------hhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCc
Confidence 1 122233333333221 2346788888999999999999999999
Q ss_pred CeEEEEeC-CCCeeEee---ec-----CCccEEEEEec--CCEEEEeecCcEEEEEeC
Q 001123 440 GLLLQWDP-NGNRLQDF---QY-----LPFAVQCLCTF--GSQIWVGYMNGIVQVLDL 486 (1149)
Q Consensus 440 gtIrlWD~-tG~~l~tl---~g-----H~~~V~sls~d--G~~LaSGs~DGtIrlWD~ 486 (1149)
|++.+||- +|-..|.+ .+ ....|++-++| |.+|++|..|.+|++|.-
T Consensus 381 g~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 381 GSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred eEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEec
Confidence 99999999 67444333 22 12346777776 899999999999999974
No 45
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6.3e-23 Score=217.43 Aligned_cols=273 Identities=16% Similarity=0.196 Sum_probs=203.7
Q ss_pred EEEEEeeCC--eEEE--eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceee---eecCCceEEEEEcCCCCEEE
Q 001123 135 LRTIVCTEE--QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKES---VKGVSSVMCMVGDEASGVVW 207 (1149)
Q Consensus 135 l~~l~~~~~--~l~a--g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s---~~G~~~V~~lafs~dg~~La 207 (1149)
+-.++-+.. .++| |.|+.||+|+...+...-+ ... .| +..|..+|++|.|++||
T Consensus 17 ~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~c------------------k~vld~~h-krsVRsvAwsp~g~~La 77 (312)
T KOG0645|consen 17 VWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTC------------------KTVLDDGH-KRSVRSVAWSPHGRYLA 77 (312)
T ss_pred EEEEEeccCCceEEEeecCCceEEEEecCCCCcEEE------------------EEeccccc-hheeeeeeecCCCcEEE
Confidence 335566644 3555 5699999999875322211 111 23 78999999999999999
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceee
Q 001123 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (1149)
Q Consensus 208 SGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~ 286 (1149)
+||.|.++-+|.-..+ .|+++.+|+||...|.||+||++|. |+++|.|+.|-||....+. +-...
T Consensus 78 ~aSFD~t~~Iw~k~~~------efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd--------Efec~ 143 (312)
T KOG0645|consen 78 SASFDATVVIWKKEDG------EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD--------EFECI 143 (312)
T ss_pred EeeccceEEEeecCCC------ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC--------cEEEE
Confidence 9999999999987764 4688899999999999999999998 8999999999999986321 11111
Q ss_pred EEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCC
Q 001123 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (1149)
Q Consensus 287 a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~ 365 (1149)
++ +..| ..+|+.+..-+...+|+|++ |+|||+|+-..+ ..++
T Consensus 144 aV--------L~~H----------tqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d---------ddW~---------- 186 (312)
T KOG0645|consen 144 AV--------LQEH----------TQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD---------DDWE---------- 186 (312)
T ss_pred ee--------eccc----------cccccEEEEcCCcceeEEeccCCeEEEEeecCC---------CCee----------
Confidence 11 1223 37899999999888999987 579999984311 1110
Q ss_pred ccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCC-cEEEEeCCCeEEE
Q 001123 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANGLLLQ 444 (1149)
Q Consensus 366 ~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg-~laSgs~DgtIrl 444 (1149)
...++.+|...|.+++|.+.| +|++++.|+||+|
T Consensus 187 ---------------------------------------------c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~I 221 (312)
T KOG0645|consen 187 ---------------------------------------------CVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSI 221 (312)
T ss_pred ---------------------------------------------EEEEecCccceEEEEEecCCCceEEEecCCcceEe
Confidence 001244566677888899988 5999999999999
Q ss_pred EeCCCCeeEee-ecCCccEEEEEecCCEEEEeecCcEEEEEeCC-C------ce-eeeeeccCCCeEEEEe---cCCeEE
Q 001123 445 WDPNGNRLQDF-QYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-G------NL-LGGWVAHSSPVIKMAV---GAGYIF 512 (1149)
Q Consensus 445 WD~tG~~l~tl-~gH~~~V~sls~dG~~LaSGs~DGtIrlWD~~-G------~~-l~~l~gH~~~V~sLa~---Dg~~La 512 (1149)
|-.- ..+ ..|..+++.++.+...||||+.|+.|+|+-.+ + ++ ...-.+|...|++|+. .++.|+
T Consensus 222 w~~~----~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~ 297 (312)
T KOG0645|consen 222 WRLY----TDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLA 297 (312)
T ss_pred eeec----cCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCcee
Confidence 9752 122 23778899998888899999999999999843 1 12 2344589999999994 357899
Q ss_pred eecCCCceeeeecc
Q 001123 513 TLANHGGIRGWNVT 526 (1149)
Q Consensus 513 SgS~DgtIRlWdl~ 526 (1149)
|+|.||.|++|.+.
T Consensus 298 s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 298 SGGDDGIVNFWELE 311 (312)
T ss_pred ecCCCceEEEEEec
Confidence 99999999999864
No 46
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.91 E-value=1.4e-24 Score=244.61 Aligned_cols=270 Identities=17% Similarity=0.199 Sum_probs=210.9
Q ss_pred eeec-CCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCc
Q 001123 187 SVKG-VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG 263 (1149)
Q Consensus 187 s~~G-~~~V~~lafs~-dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgT 263 (1149)
..+| +-.|.|+.|.| .+.+|+||+.|++|+||++-... ++++++.||+.+|.+++|+.+|. ++|+|.|++
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-------~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-------RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc-------ceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence 4456 88999999999 89999999999999999997632 45889999999999999999997 999999999
Q ss_pred EEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCC--EEEEecCCceEEEEcCC
Q 001123 264 IKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA--KVWSAGFLSFALWDART 341 (1149)
Q Consensus 264 IRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~--~v~Sasd~tIrLWD~~T 341 (1149)
||+||++||++...+.... -..|+-+.+++. .++.++++.|+.||+++
T Consensus 282 lKlwDtETG~~~~~f~~~~------------------------------~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs 331 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHLDK------------------------------VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS 331 (503)
T ss_pred eeeeccccceEEEEEecCC------------------------------CceeeecCCCCCcEEEEecCCCcEEEEeccc
Confidence 9999999998877664321 123344444442 23344578899999999
Q ss_pred ccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeeccccc-----
Q 001123 342 RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFG----- 416 (1149)
Q Consensus 342 G~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~----- 416 (1149)
|+.++.+..|-+. +..+.|.+.++.-++.+.+...|+|..+.-+
T Consensus 332 ~kvvqeYd~hLg~-------------------------------i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i 380 (503)
T KOG0282|consen 332 GKVVQEYDRHLGA-------------------------------ILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNI 380 (503)
T ss_pred hHHHHHHHhhhhh-------------------------------eeeeEEccCCceEeeeccCccEEEEEcCCCccchhh
Confidence 9977766544332 2345777778888888888888888633211
Q ss_pred --CCCCceEEEEEcCCCc-EEEEeCCCeEEEEeCC----CCeeEeeecCCccEEEE----EecCCEEEEeecCcEEEEEe
Q 001123 417 --DDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN----GNRLQDFQYLPFAVQCL----CTFGSQIWVGYMNGIVQVLD 485 (1149)
Q Consensus 417 --~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~t----G~~l~tl~gH~~~V~sl----s~dG~~LaSGs~DGtIrlWD 485 (1149)
.......++..+|.+. ++.-+.|..|.++.+. -+....+.||..+=+++ ++||++|++|+.||.+.+||
T Consensus 381 ~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 381 ADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred cchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEee
Confidence 1123456788888766 6788899999999972 24557788987654433 56899999999999999999
Q ss_pred CC-CceeeeeeccCCCeEEEEe---cCCeEEeecCCCceeeee
Q 001123 486 LE-GNLLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWN 524 (1149)
Q Consensus 486 ~~-G~~l~~l~gH~~~V~sLa~---Dg~~LaSgS~DgtIRlWd 524 (1149)
.. .+++..|.+|.++++.+.+ ....+||+|.||.|++|+
T Consensus 461 wkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 461 WKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred chhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 76 7899999999999999984 557899999999999996
No 47
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=6.4e-23 Score=242.30 Aligned_cols=300 Identities=15% Similarity=0.209 Sum_probs=233.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
++.|..++|.|.-.+|.++...|.|++||-.-+.| +..|.+|.|||.+|+|+|.+- ++||+.|-+||||+.
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tl--------i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTL--------IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhH--------HhhhhccCCccceeeecCCCCeEEecCCccEEEEEec
Confidence 56788999999999999999999999999876543 667899999999999999887 589999999999999
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecC-CceEEEEcCCccEEEEE
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVF 348 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd-~tIrLWD~~TG~~L~~l 348 (1149)
.+..+..++.+|. ..|+.+.+-+.--++.||+| .|||||+-.+++|+.++
T Consensus 81 k~rrclftL~GHl-----------------------------DYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl 131 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHL-----------------------------DYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL 131 (1202)
T ss_pred ccceehhhhcccc-----------------------------ceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE
Confidence 8877666654432 44566666676678888876 68999999999999999
Q ss_pred ecCCceeeEEeeccCCCccccc--cceeeEEe--cCCC-Cccceeeeeeccccce---EeecCCcEEEEeecccccCCCC
Q 001123 349 NIDGQIENRVDMSLLPDFAMED--EFKTKIVT--SSKK-DKAQSSFGFFQRSRNA---IMGAADAVRRVAAKGGFGDDNR 420 (1149)
Q Consensus 349 ~~~g~~~~~v~~S~~~~~~~~~--~~~~~~~s--~~~k-~~~~~si~f~~~~~~~---i~G~~d~v~rv~~~g~~~~~~~ 420 (1149)
.+|.+.+.+-.|.|..+..++. +-++++|. +.++ ..+..++.-...+.+. +-|..|+|.+ ..+.+|.+
T Consensus 132 tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK----~VLEGHDR 207 (1202)
T KOG0292|consen 132 TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVK----HVLEGHDR 207 (1202)
T ss_pred ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeee----eeeccccc
Confidence 9999999998998877765542 22344554 4332 2222211111112222 4455566654 34789999
Q ss_pred ceEEEEEcCCC-cEEEEeCCCeEEEEeCC-C--CeeEeeecCCccEEEEEecC--CEEEEeecCcEEEEEeCC-Cceeee
Q 001123 421 RTEALTTSIDG-MIWTGGANGLLLQWDPN-G--NRLQDFQYLPFAVQCLCTFG--SQIWVGYMNGIVQVLDLE-GNLLGG 493 (1149)
Q Consensus 421 ~V~ava~s~Dg-~laSgs~DgtIrlWD~t-G--~~l~tl~gH~~~V~sls~dG--~~LaSGs~DGtIrlWD~~-G~~l~~ 493 (1149)
.|+.++|.|.- .|+||+.|..||+|-++ . =.+-+..||.+.|.|+-+.+ ..|+|.|.|++|||||.+ .+.+++
T Consensus 208 GVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~t 287 (1202)
T KOG0292|consen 208 GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQT 287 (1202)
T ss_pred ccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceee
Confidence 99999999974 57899999999999993 3 35788899999999999876 899999999999999987 677899
Q ss_pred eeccCCCeEEEEecCC-eEEeecCCCceeeeeccCCCCC
Q 001123 494 WVAHSSPVIKMAVGAG-YIFTLANHGGIRGWNVTSPGPL 531 (1149)
Q Consensus 494 l~gH~~~V~sLa~Dg~-~LaSgS~DgtIRlWdl~sp~pl 531 (1149)
|+--.+.-+.|+..+. -|+.|+.|+.+-++.++...|.
T Consensus 288 frrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa 326 (1202)
T KOG0292|consen 288 FRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPA 326 (1202)
T ss_pred eeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCce
Confidence 9887888888885543 3666889999999999876664
No 48
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.3e-24 Score=219.28 Aligned_cols=141 Identities=35% Similarity=0.536 Sum_probs=125.5
Q ss_pred cEEEEeeeccceeeeeeeeeccccCccceeEeeeEeecccccccCcceeEEEEEEeceEEEEeeecccccchhHHH-HHH
Q 001123 632 TFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNR-RNA 710 (1149)
Q Consensus 632 ~y~~v~s~qL~Gl~l~vfvr~~l~~~i~~v~~~~v~tG~~g~~gNKGaV~ir~~~~~t~lcFVn~HLaA~~~~~~~-Rn~ 710 (1149)
.|..+.+.||+|+.+.+|+++++..++.++++.++++|+++.+||||||+++++++++.+|||||||+||.++..+ ||+
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~g~~~~~~nkg~v~is~~~~~~~~~~v~~hl~~~~~~~~~~r~~ 81 (145)
T KOG0565|consen 2 LYVVVASGRLVGIDLSVLLRRDLLDHSFNVRVSEVGTGIMGYLGNKGGVAISFVLSQTSFCFVISHLTSGVHKVYERRNE 81 (145)
T ss_pred cEEEEeeeEEEEEEEEEEehhhhhhhhcccEEEEecceEEEEeCCCCeEEEEEEEcCceEEEEEecccccchhhHHHhhc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999888 999
Q ss_pred HHHHHHHhcccCCCCCccccccCCCchhhhhhhhhhhhhhhhhhhccCCchhhhhhccccchhhhcccCCCCCCCcccCC
Q 001123 711 DFDHVYRTMTFCRPSNLCSAAAGTMPFLLLSCVLACSMYLLWLVYRSGLPLVLYIAAGASSVVQMLRSTNPLSGLTVEGV 790 (1149)
Q Consensus 711 d~~~I~~~l~F~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1149)
||++|++++.|....... .
T Consensus 82 d~~~i~~~~~~~~~~~~~-------------------------------------------------------------~ 100 (145)
T KOG0565|consen 82 DYQEILNGLRFPSVSPAS-------------------------------------------------------------E 100 (145)
T ss_pred cHHHHHhhccccccCccc-------------------------------------------------------------c
Confidence 999999999987432210 0
Q ss_pred Cc-c-cCccEEEEECccCCCCCCCChHHHHHHHhhcChHHHHHhh
Q 001123 791 PE-L-SEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERD 833 (1149)
Q Consensus 791 ~~-i-~~~D~vfw~GDlNyRi~~~~~~~v~~~i~~~~~~~Ll~~D 833 (1149)
+. + ..||.|||+||||||+.+.++.+++.++.++.++.|+++|
T Consensus 101 ~~~~~~~~D~v~w~GDlN~Rl~~~~~~~~~~~~~~~~~~~l~~~d 145 (145)
T KOG0565|consen 101 PVISDGEHDTVIWLGDLNYRLSGPSYLEVRTLISVKSRDGLLEKD 145 (145)
T ss_pred cccccccccEEEEecceeeeecCcccccchhhhhhcchhhhhccC
Confidence 00 1 1289999999999999985588899999999999998876
No 49
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.91 E-value=6.7e-24 Score=234.61 Aligned_cols=238 Identities=21% Similarity=0.317 Sum_probs=191.7
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
.-+|..|.+.|+|+.|++|++-|.+-+|+..+ |.--..+++|..+|.+|.+|++|. ++||+.||.||+|+.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~--------fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqp 167 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS--------FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQP 167 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCce--------eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEeccc
Confidence 45788999999999999999999999998743 122234689999999999999998 899999999999997
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecC-CceEEEEcCCccEEEEE
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVF 348 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd-~tIrLWD~~TG~~L~~l 348 (1149)
+-. .... ..+| ....|+++++++.+.+.++++| ++|+|||....+.-++|
T Consensus 168 nmn-nVk~-------------------~~ah---------h~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL 218 (464)
T KOG0284|consen 168 NMN-NVKI-------------------IQAH---------HAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL 218 (464)
T ss_pred chh-hhHH-------------------hhHh---------hhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee
Confidence 421 0000 0111 1256889999999999998875 68999997654433333
Q ss_pred ecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEc
Q 001123 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (1149)
Q Consensus 349 ~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s 428 (1149)
. +|.-.|.++.+.
T Consensus 219 ~-------------------------------------------------------------------GHgwdVksvdWH 231 (464)
T KOG0284|consen 219 R-------------------------------------------------------------------GHGWDVKSVDWH 231 (464)
T ss_pred c-------------------------------------------------------------------cCCCCcceeccC
Confidence 3 344445566666
Q ss_pred CC-CcEEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEE
Q 001123 429 ID-GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK 503 (1149)
Q Consensus 429 ~D-g~laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~s 503 (1149)
|. |.|+|||.|..|++||. +|+|+.++.+|...|..+.+ +|.+|+++|.|..++|+|+. =+.+.+++||...|++
T Consensus 232 P~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~ 311 (464)
T KOG0284|consen 232 PTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTS 311 (464)
T ss_pred CccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhhee
Confidence 65 56899999999999999 89999999999999999977 58999999999999999987 4678999999999999
Q ss_pred EEe---cCCeEEeecCCCceeeeeccCCCCCc
Q 001123 504 MAV---GAGYIFTLANHGGIRGWNVTSPGPLD 532 (1149)
Q Consensus 504 La~---Dg~~LaSgS~DgtIRlWdl~sp~pld 532 (1149)
++. ...++.||+.||.|..|.+....|+.
T Consensus 312 ~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~ 343 (464)
T KOG0284|consen 312 LTWHPLNESLFTSGGSDGSVVHWVVGLEEPLG 343 (464)
T ss_pred eccccccccceeeccCCCceEEEecccccccc
Confidence 983 67789999999999999987544543
No 50
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3.4e-22 Score=229.75 Aligned_cols=233 Identities=14% Similarity=0.209 Sum_probs=191.2
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
+..|.|+.|.|...++..+-..|.|.+|+-++-. .+.++.-..-||.+..|-+--+ +++||.|..|||++.
T Consensus 13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetqt--------mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT--------MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred CCceeeeecCCCCceEEEeeecCeeEEEecccce--------eeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 6789999999999999999999999999998854 3677777788999999987654 899999999999999
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecC-CceEEEEcCCc-cEEEE
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTR-ELLKV 347 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd-~tIrLWD~~TG-~~L~~ 347 (1149)
+|+++...+.+|. ..+++++.-+..-.+.+++| .+|++||-..+ .|.++
T Consensus 85 nt~ekV~~FeAH~-----------------------------DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qt 135 (794)
T KOG0276|consen 85 NTGEKVKTFEAHS-----------------------------DYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQT 135 (794)
T ss_pred ccceeeEEeeccc-----------------------------cceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeE
Confidence 9998877665443 44566666565555666654 68999996532 22222
Q ss_pred EecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEE
Q 001123 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (1149)
Q Consensus 348 l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~ 427 (1149)
|.+|...|-.|+|
T Consensus 136 -------------------------------------------------------------------feGH~HyVMqv~f 148 (794)
T KOG0276|consen 136 -------------------------------------------------------------------FEGHEHYVMQVAF 148 (794)
T ss_pred -------------------------------------------------------------------EcCcceEEEEEEe
Confidence 5566666677777
Q ss_pred cCC--CcEEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe-cC---CEEEEeecCcEEEEEeCC-CceeeeeeccCC
Q 001123 428 SID--GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT-FG---SQIWVGYMNGIVQVLDLE-GNLLGGWVAHSS 499 (1149)
Q Consensus 428 s~D--g~laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~-dG---~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~ 499 (1149)
.|. .++||+|-|+|||+|++ ...+..||.||...|+|+.+ .| .+|+||+.|.+|+|||.. ..|+++|.||+.
T Consensus 149 nPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~ 228 (794)
T KOG0276|consen 149 NPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN 228 (794)
T ss_pred cCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc
Confidence 774 35899999999999999 67889999999999999976 33 599999999999999965 679999999999
Q ss_pred CeEEEEecCC--eEEeecCCCceeeeeccC
Q 001123 500 PVIKMAVGAG--YIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 500 ~V~sLa~Dg~--~LaSgS~DgtIRlWdl~s 527 (1149)
.|..+.+.+. .++|||.|||+|+|+..+
T Consensus 229 Nvs~v~fhp~lpiiisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 229 NVSFVFFHPELPIIISGSEDGTVRIWNSKT 258 (794)
T ss_pred cceEEEecCCCcEEEEecCCccEEEecCcc
Confidence 9999987654 799999999999999654
No 51
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=4.9e-22 Score=206.76 Aligned_cols=263 Identities=18% Similarity=0.245 Sum_probs=205.5
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
.++|.++.|+-||.+..+++.|.+||+|++..|.| +.+..||...|..++.+.|+. ++||+.|+.|.+||+
T Consensus 17 qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~l--------iktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 17 QGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGAL--------IKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred ccceEEEEEccCCCEEEEcCCCceEEeecccccce--------eeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 78999999999999999999999999999988764 889999999999999999875 999999999999999
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCcc--EEE
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE--LLK 346 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~--~L~ 346 (1149)
+||+....+ ++|. ++++.+.++.....++|++ |.++|+||.++.. +++
T Consensus 89 ~TGkv~Rr~-------------------rgH~----------aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQ 139 (307)
T KOG0316|consen 89 NTGKVDRRF-------------------RGHL----------AQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQ 139 (307)
T ss_pred ccCeeeeec-------------------cccc----------ceeeEEEecCcceEEEeccccceeEEEEcccCCCCccc
Confidence 998754433 3344 6788889999888999988 5679999998642 334
Q ss_pred EEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEee--cccccCC--CCce
Q 001123 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGGFGDD--NRRT 422 (1149)
Q Consensus 347 ~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~--~g~~~~~--~~~V 422 (1149)
+|.... ..+.++... ...++.|+.||..|..+ +|++..+ ..+|
T Consensus 140 ildea~-------------------------------D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g~pi 186 (307)
T KOG0316|consen 140 ILDEAK-------------------------------DGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPI 186 (307)
T ss_pred hhhhhc-------------------------------CceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcCCcc
Confidence 332100 011112111 23578899999888876 4444433 4589
Q ss_pred EEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEE----EecCCEEEEeecCcEEEEEeC-CCceeeeee
Q 001123 423 EALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL----CTFGSQIWVGYMNGIVQVLDL-EGNLLGGWV 495 (1149)
Q Consensus 423 ~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sl----s~dG~~LaSGs~DGtIrlWD~-~G~~l~~l~ 495 (1149)
+++.+++||. .+.++.|+++++-|- +|+.++..+||.+.=+.+ ......+++||.||.|.+||+ ++.++..+.
T Consensus 187 t~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~ 266 (307)
T KOG0316|consen 187 TSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLS 266 (307)
T ss_pred eeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeec
Confidence 9999999998 678999999999999 899999999998876655 234689999999999999996 488899999
Q ss_pred ccCCC-eEEEEecCC--eEEeecCCCceeeee
Q 001123 496 AHSSP-VIKMAVGAG--YIFTLANHGGIRGWN 524 (1149)
Q Consensus 496 gH~~~-V~sLa~Dg~--~LaSgS~DgtIRlWd 524 (1149)
.|... |.+|+..++ .+++|. ++.+..|-
T Consensus 267 ~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 267 VVSTVIVTDLSCHPTMDDFITAT-GHGDLFWY 297 (307)
T ss_pred cCCceeEEeeecccCccceeEec-CCceecee
Confidence 88887 778885443 344443 44566675
No 52
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=3.5e-22 Score=232.67 Aligned_cols=267 Identities=18% Similarity=0.252 Sum_probs=192.7
Q ss_pred eEEEEEeeCCe-EEEe-CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEE-EEEc-CCCCEEEE
Q 001123 134 FLRTIVCTEEQ-LWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMC-MVGD-EASGVVWS 208 (1149)
Q Consensus 134 ~l~~l~~~~~~-l~ag-~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~-lafs-~dg~~LaS 208 (1149)
-+++++....- +.++ .|+++|||+-....-..+ +.+.| .+-|.+ +.+. .++.+|++
T Consensus 16 DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~-------------------~~~~~~~g~i~~~i~y~e~~~~~l~~ 76 (745)
T KOG0301|consen 16 DVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLET-------------------HAFEGPKGFIANSICYAESDKGRLVV 76 (745)
T ss_pred chheeEecCCeEEeecCCCCceeeeeccCcccccc-------------------eecccCcceeeccceeccccCcceEe
Confidence 34555555333 4554 499999999653332221 11222 344444 4454 46678999
Q ss_pred EeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcceeeecCCCcceeeEE
Q 001123 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (1149)
Q Consensus 209 GS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~ 288 (1149)
|+.|++|.+|.+.+. .+..+|+||+.-|.|+..-.++.|+|||+|.|+|+|..... ...+.+
T Consensus 77 g~~D~~i~v~~~~~~--------~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l--~~~l~g-------- 138 (745)
T KOG0301|consen 77 GGMDTTIIVFKLSQA--------EPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGEL--VYSLQG-------- 138 (745)
T ss_pred ecccceEEEEecCCC--------CchhhhhccccceeeeecCCcCceEecccccceEEecchhh--hcccCC--------
Confidence 999999999999875 35788999999999999888888999999999999987432 222222
Q ss_pred EeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccc
Q 001123 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (1149)
Q Consensus 289 ~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~ 368 (1149)
|. ..|-.+++=+.+..|..++|.+||+|.. |+++++|++
T Consensus 139 -----------H~----------asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~g------------------ 177 (745)
T KOG0301|consen 139 -----------HT----------ASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSG------------------ 177 (745)
T ss_pred -----------cc----------hheeeeeecCCCcEEeccCcceeeeccC--Cchhhhhcc------------------
Confidence 21 2223344444444444455789999985 555555543
Q ss_pred cccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCcEEEEeCCCeEEEEeCC
Q 001123 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDPN 448 (1149)
Q Consensus 369 ~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~laSgs~DgtIrlWD~t 448 (1149)
|...|..+++-+++.++|++.||.||+||++
T Consensus 178 -------------------------------------------------HtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ 208 (745)
T KOG0301|consen 178 -------------------------------------------------HTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD 208 (745)
T ss_pred -------------------------------------------------chhheeeeEEecCCCeEeecCCceEEEEecc
Confidence 3344455667788789999999999999999
Q ss_pred CCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCCCceeeeeeccCCCeEEEE-ecCCeEEeecCCCceeeeec
Q 001123 449 GNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMA-VGAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 449 G~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~G~~l~~l~gH~~~V~sLa-~Dg~~LaSgS~DgtIRlWdl 525 (1149)
|+++.++.||++-|++++. +++.|+|.+.|+++|+|+.. .+.+.+.--+-.|+++. ....-|++|+.||.||+|..
T Consensus 209 ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 209 GEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTV 287 (745)
T ss_pred CceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEe
Confidence 9999999999999999973 68999999999999999976 66665543344788887 45566889999999999997
Q ss_pred cCC
Q 001123 526 TSP 528 (1149)
Q Consensus 526 ~sp 528 (1149)
..-
T Consensus 288 ~k~ 290 (745)
T KOG0301|consen 288 DKD 290 (745)
T ss_pred ccc
Confidence 643
No 53
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=6.2e-23 Score=220.28 Aligned_cols=275 Identities=18% Similarity=0.237 Sum_probs=219.5
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
.+.+-|..|||||++|+|||.||-|-+|+..+|...-.-.+...-.|-=|..+|.|+.||.|.. |+|||.||.||||.+
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 6789999999999999999999999999998887411001111123445889999999999998 899999999999999
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEE
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l 348 (1149)
++|.+...+. ++|. ..+.|+.++.++..+.|++ |.++|+--+++|++|+.|
T Consensus 293 ~tG~ClRrFd------------------rAHt----------kGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf 344 (508)
T KOG0275|consen 293 ETGQCLRRFD------------------RAHT----------KGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF 344 (508)
T ss_pred ecchHHHHhh------------------hhhc----------cCeeEEEEccCcchhhcccccceEEEeccccchhHHHh
Confidence 9988765442 1222 4577888999999888887 578999999999999999
Q ss_pred ecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec------cccc--CCCC
Q 001123 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFG--DDNR 420 (1149)
Q Consensus 349 ~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~------g~~~--~~~~ 420 (1149)
.+|...++- ..|.+++..+++.+.||..++|.. .+|. +...
T Consensus 345 rGHsSyvn~-------------------------------a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~ 393 (508)
T KOG0275|consen 345 RGHSSYVNE-------------------------------ATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDY 393 (508)
T ss_pred cCccccccc-------------------------------eEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcc
Confidence 998876421 246667778888889998888862 2332 2334
Q ss_pred ceEEEEEcCCC--cEEEEeCCCeEEEEeCCCCeeEeeecCC----ccEEEE-EecCCEEEEeecCcEEEEEeC-CCceee
Q 001123 421 RTEALTTSIDG--MIWTGGANGLLLQWDPNGNRLQDFQYLP----FAVQCL-CTFGSQIWVGYMNGIVQVLDL-EGNLLG 492 (1149)
Q Consensus 421 ~V~ava~s~Dg--~laSgs~DgtIrlWD~tG~~l~tl~gH~----~~V~sl-s~dG~~LaSGs~DGtIrlWD~-~G~~l~ 492 (1149)
.|..|..-|.. .++.+...+||.|-++.|+.+++|.... +-|+|+ ++-|.++++.+.|+.++.+.+ +|++-+
T Consensus 394 ~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~ 473 (508)
T KOG0275|consen 394 PVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLER 473 (508)
T ss_pred cceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceee
Confidence 56676655543 4888888999999999999999996533 336654 778999999999999999995 699999
Q ss_pred eeeccCCCeEEEE--ecCCeEEeecCCCceeeee
Q 001123 493 GWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWN 524 (1149)
Q Consensus 493 ~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWd 524 (1149)
++.-|..-|..++ |..+.|+|-|.||.+|+|.
T Consensus 474 tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 474 TLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999999 5778999999999999995
No 54
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.1e-21 Score=204.74 Aligned_cols=266 Identities=17% Similarity=0.169 Sum_probs=198.3
Q ss_pred CCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEe-ecCCCCEEEEEEeCCCc-EEEEECCCcEEEE
Q 001123 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGD-LWSGSEGGGIKIW 267 (1149)
Q Consensus 191 ~~~V~~lafs~d-g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l-~GH~~~VtsVafSpdG~-L~SGS~DgTIRVW 267 (1149)
.+.+..+|++|. |..|||+|.|..||+|+...+. ...+...+ .||+..|.+|+++|.|+ |++||.|.|+-||
T Consensus 14 ~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~-----s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw 88 (312)
T KOG0645|consen 14 KDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD-----SWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIW 88 (312)
T ss_pred CCcEEEEEeccCCceEEEeecCCceEEEEecCCCC-----cEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEe
Confidence 778999999998 8899999999999999988532 12223333 48999999999999998 8999999999999
Q ss_pred eCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEE
Q 001123 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (1149)
Q Consensus 268 dl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~ 346 (1149)
.-..++-- .++ .+.+|. .+|++++++.+|..|++++ |+++-+|.+..++...
T Consensus 89 ~k~~~efe--------cv~---------~lEGHE----------nEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfe 141 (312)
T KOG0645|consen 89 KKEDGEFE--------CVA---------TLEGHE----------NEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFE 141 (312)
T ss_pred ecCCCcee--------EEe---------eeeccc----------cceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEE
Confidence 87543211 111 134454 7899999999999999887 5789999875332100
Q ss_pred EEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEE
Q 001123 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (1149)
Q Consensus 347 ~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava 426 (1149)
. .+.+.+|++.|..|.
T Consensus 142 c----------------------------------------------------------------~aVL~~HtqDVK~V~ 157 (312)
T KOG0645|consen 142 C----------------------------------------------------------------IAVLQEHTQDVKHVI 157 (312)
T ss_pred E----------------------------------------------------------------EeeeccccccccEEE
Confidence 0 012556777777788
Q ss_pred EcCC-CcEEEEeCCCeEEEEeCC-C---CeeEeeecCCccEEEEEec--CCEEEEeecCcEEEEEeCCCceeeeeeccCC
Q 001123 427 TSID-GMIWTGGANGLLLQWDPN-G---NRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLEGNLLGGWVAHSS 499 (1149)
Q Consensus 427 ~s~D-g~laSgs~DgtIrlWD~t-G---~~l~tl~gH~~~V~sls~d--G~~LaSGs~DGtIrlWD~~G~~l~~l~gH~~ 499 (1149)
++|. +.|+|+|.|.|||+|.-. + +|+++|.+|...|.+++|+ |.+|++++.|++++||-.-..+ -.-|+.
T Consensus 158 WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~---~~~~sr 234 (312)
T KOG0645|consen 158 WHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL---SGMHSR 234 (312)
T ss_pred EcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc---chhccc
Confidence 8886 458899999999999883 4 7999999999999999884 8999999999999999843111 113788
Q ss_pred CeEEEEecCCeEEeecCCCceeeeeccCCCCCchhhhhhccccccceeeeeceEEEEEEEEe
Q 001123 500 PVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNV 561 (1149)
Q Consensus 500 ~V~sLa~Dg~~LaSgS~DgtIRlWdl~sp~pld~~i~~~l~~re~~yt~~~~~~i~v~TWNv 561 (1149)
.++.++.+...|+|++.|+.||++.-. -+|-+..+. .+.+++.. ....|-..-||=
T Consensus 235 ~~Y~v~W~~~~IaS~ggD~~i~lf~~s-~~~d~p~~~-l~~~~~~a----He~dVNsV~w~p 290 (312)
T KOG0645|consen 235 ALYDVPWDNGVIASGGGDDAIRLFKES-DSPDEPSWN-LLAKKEGA----HEVDVNSVQWNP 290 (312)
T ss_pred ceEeeeecccceEeccCCCEEEEEEec-CCCCCchHH-HHHhhhcc----cccccceEEEcC
Confidence 999999887899999999999999865 233222222 22222221 223677778885
No 55
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.7e-22 Score=230.58 Aligned_cols=257 Identities=16% Similarity=0.197 Sum_probs=195.6
Q ss_pred CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCC
Q 001123 149 GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSD 228 (1149)
Q Consensus 149 ~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~ 228 (1149)
..|.|.+||-++...+++ |. +. .-||.++.|=+--.+|++||.|+.||+++.+++.
T Consensus 33 ynG~V~IWnyetqtmVks-----------------fe--V~-~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e---- 88 (794)
T KOG0276|consen 33 YNGDVQIWNYETQTMVKS-----------------FE--VS-EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE---- 88 (794)
T ss_pred ecCeeEEEecccceeeee-----------------ee--ec-ccchhhheeeeccceEEEecCCceEEEEecccce----
Confidence 478999999998777765 11 22 4577788888888999999999999999999865
Q ss_pred CCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCc-ceeeecCCCcceeeEEEeeeccccccccccccce
Q 001123 229 DGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAI-EKALSLKPEERHTAALIVERSYIDLRSHLSVNGF 306 (1149)
Q Consensus 229 ~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~-~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~ 306 (1149)
.+.+|.+|.+.|.+|+.+|.-- ++|+|.|-+||+||++.. .+..++.+|+
T Consensus 89 ----kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~------------------------ 140 (794)
T KOG0276|consen 89 ----KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHE------------------------ 140 (794)
T ss_pred ----eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcc------------------------
Confidence 4889999999999999999654 789999999999999762 2223333222
Q ss_pred eeeecCCeEEEEEcCCC-CEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCc
Q 001123 307 SSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDK 384 (1149)
Q Consensus 307 ~~~~~~dv~~las~~~~-~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~ 384 (1149)
..|..+++.+.+ ...+|++ |+||++|.+-+..+..+|
T Consensus 141 -----HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl------------------------------------ 179 (794)
T KOG0276|consen 141 -----HYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTL------------------------------------ 179 (794)
T ss_pred -----eEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceee------------------------------------
Confidence 345667776644 4666765 889999997544333333
Q ss_pred cceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCC---cEEEEeCCCeEEEEeC-CCCeeEeeecCCc
Q 001123 385 AQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG---MIWTGGANGLLLQWDP-NGNRLQDFQYLPF 460 (1149)
Q Consensus 385 ~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg---~laSgs~DgtIrlWD~-tG~~l~tl~gH~~ 460 (1149)
.+|...|++|.+-+.| .|+||+.|.+|++||. |-.|+++|.||..
T Consensus 180 -------------------------------~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~ 228 (794)
T KOG0276|consen 180 -------------------------------EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN 228 (794)
T ss_pred -------------------------------eccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc
Confidence 3444445555555554 6999999999999999 7899999999999
Q ss_pred cEEEEEecC--CEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEEEE--ecCCeEEeecCCCceeeeeccCCCC
Q 001123 461 AVQCLCTFG--SQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSPGP 530 (1149)
Q Consensus 461 ~V~sls~dG--~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~sp~p 530 (1149)
.|.++.+.. ..|+|||.|||+|||... =++..++.---+.|++++ .+++.++.|...|.|- -.+....|
T Consensus 229 Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~-v~lgreeP 302 (794)
T KOG0276|consen 229 NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT-VKLGREEP 302 (794)
T ss_pred cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE-EEccCCCC
Confidence 999998854 799999999999999965 466677777778999998 4666777776666553 35544444
No 56
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.90 E-value=1.3e-21 Score=229.16 Aligned_cols=328 Identities=19% Similarity=0.242 Sum_probs=214.9
Q ss_pred CCeEEEe-CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001123 142 EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (1149)
Q Consensus 142 ~~~l~ag-~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~~LaSGS~DGtIRvWd 219 (1149)
.++..+. .-..|-+||+.+|...+. +.. .+ ...|.|+.-+++.-+||-|-.||.|++|+
T Consensus 33 ~Gr~va~~a~E~vn~WdlRtge~~~~-----------------l~~--~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~ 93 (888)
T KOG0306|consen 33 KGRAVAVSALEQVNIWDLRTGEIEKK-----------------LIL--LKKKAEVTCLRSSDDILLLAVGYADGSVQIFS 93 (888)
T ss_pred CCcEEEEeccccEeEEeeecchhhhh-----------------hhh--hcccceEEEeeccCCcceEEEEecCceEEeec
Confidence 3555554 566799999998854332 111 11 45899999999999999999999999999
Q ss_pred CCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeecccccc
Q 001123 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLR 298 (1149)
Q Consensus 220 l~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~ 298 (1149)
..++. ...+|.||+.+|+.+.|+..|. |+|||.|+.|-|||+-...-... ++
T Consensus 94 ~~s~~--------~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~r-------------------L~ 146 (888)
T KOG0306|consen 94 LESEE--------ILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFR-------------------LR 146 (888)
T ss_pred cCCCc--------eeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEE-------------------ee
Confidence 98753 4678999999999999999997 89999999999999854322222 33
Q ss_pred ccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccC--------CCcc-c
Q 001123 299 SHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLL--------PDFA-M 368 (1149)
Q Consensus 299 ~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~--------~~~~-~ 368 (1149)
+|. ..+.-..+..+...++|.+ |..|++||+.+..|..+.-.|...++.+.+.+. .+.. +
T Consensus 147 GHk----------d~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~ 216 (888)
T KOG0306|consen 147 GHK----------DSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVW 216 (888)
T ss_pred cch----------HHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEE
Confidence 333 1222222333344555544 678999999999998775444433333333220 0000 0
Q ss_pred c----c-c---------------------ceeeEEecCCC--------C---------------------------ccc-
Q 001123 369 E----D-E---------------------FKTKIVTSSKK--------D---------------------------KAQ- 386 (1149)
Q Consensus 369 ~----~-~---------------------~~~~~~s~~~k--------~---------------------------~~~- 386 (1149)
+ . + ....++..... + ++.
T Consensus 217 ~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t 296 (888)
T KOG0306|consen 217 ELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAET 296 (888)
T ss_pred EeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccc
Confidence 0 0 0 00011110000 0 000
Q ss_pred ---------------------------eeeeeecccc--ceEeecCCcEEEEee---------------cccccCCCCce
Q 001123 387 ---------------------------SSFGFFQRSR--NAIMGAADAVRRVAA---------------KGGFGDDNRRT 422 (1149)
Q Consensus 387 ---------------------------~si~f~~~~~--~~i~G~~d~v~rv~~---------------~g~~~~~~~~V 422 (1149)
.++...+.+. +.+.--++....+.. .-.+.+|...|
T Consensus 297 ~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dV 376 (888)
T KOG0306|consen 297 EENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDV 376 (888)
T ss_pred cccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhhe
Confidence 0000111100 000000111111110 01356788899
Q ss_pred EEEEEcCCCcEEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEE--ecCCEEEEeecCcEEEEEeCC-CceeeeeeccC
Q 001123 423 EALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS 498 (1149)
Q Consensus 423 ~ava~s~Dg~laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls--~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~ 498 (1149)
.++.+|.|..++..++.+.|++|+. +++|++++... -+.+.. +-++++++|...|.+.|+|+. +.++-+..+|.
T Consensus 377 Rsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHd 454 (888)
T KOG0306|consen 377 RSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHD 454 (888)
T ss_pred eEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccc
Confidence 9999999987655556778999999 79999999865 444443 357899999999999999976 77888889999
Q ss_pred CCeEEEE--ecCCeEEeecCCCceeeeeccC
Q 001123 499 SPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 499 ~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
+.|++++ +|++..+|||.|.|||+||...
T Consensus 455 gaIWsi~~~pD~~g~vT~saDktVkfWdf~l 485 (888)
T KOG0306|consen 455 GAIWSISLSPDNKGFVTGSADKTVKFWDFKL 485 (888)
T ss_pred cceeeeeecCCCCceEEecCCcEEEEEeEEE
Confidence 9999998 7999999999999999999753
No 57
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.89 E-value=4.2e-21 Score=215.74 Aligned_cols=277 Identities=13% Similarity=0.204 Sum_probs=213.7
Q ss_pred eeEEEEEee--CCeEEEeC-CCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEE
Q 001123 133 CFLRTIVCT--EEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (1149)
Q Consensus 133 ~~l~~l~~~--~~~l~ag~-D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSG 209 (1149)
+-+.+|+=. ++.|..|. ||-+|+|+.. |....+ + ..| .+||.+|.++..|.+|+||
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~t-----------------l--~~H-kgPI~slKWnk~G~yilS~ 294 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLIST-----------------L--GQH-KGPIFSLKWNKKGTYILSG 294 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhh-----------------h--hcc-CCceEEEEEcCCCCEEEec
Confidence 455566655 55555554 7789999975 333332 1 235 8899999999999999999
Q ss_pred eCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcceeeecCCCcceeeEEE
Q 001123 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (1149)
Q Consensus 210 S~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~ 289 (1149)
+.|+++.+||..+|.+ ...+.=|..+-..|.+-.+..+++++.|+.|+|..+....+..++.
T Consensus 295 ~vD~ttilwd~~~g~~--------~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~---------- 356 (524)
T KOG0273|consen 295 GVDGTTILWDAHTGTV--------KQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFI---------- 356 (524)
T ss_pred cCCccEEEEeccCceE--------EEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeee----------
Confidence 9999999999988763 4567778888777888887789999999999999885544333332
Q ss_pred eeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecC-CceEEEEcCCccEEEEEecCCceeeEEeeccCCCccc
Q 001123 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (1149)
Q Consensus 290 ~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd-~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~ 368 (1149)
+| +++|.++-+++.+.+|+|++| +|++||....+.+.+.|..|.+.+....++|.+....
T Consensus 357 ---------GH----------~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~ 417 (524)
T KOG0273|consen 357 ---------GH----------HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTS 417 (524)
T ss_pred ---------cc----------cCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccC
Confidence 12 377888999999999999875 6899999988877777776665433333332211110
Q ss_pred cccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCC-cEEEEeCCCeEEEEeC
Q 001123 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDP 447 (1149)
Q Consensus 369 ~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg-~laSgs~DgtIrlWD~ 447 (1149)
.+.++ .+++++.|+||++||+
T Consensus 418 ----------------------------------------------------------n~~~~~~l~sas~dstV~lwdv 439 (524)
T KOG0273|consen 418 ----------------------------------------------------------NPNMNLMLASASFDSTVKLWDV 439 (524)
T ss_pred ----------------------------------------------------------CCcCCceEEEeecCCeEEEEEc
Confidence 01122 4789999999999999
Q ss_pred -CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEEEE--ecCCeEEeecCCCcee
Q 001123 448 -NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIR 521 (1149)
Q Consensus 448 -tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIR 521 (1149)
.|.|+.+|..|+.+|+++++ +|+|||+|+.||.|.+|+.. |++.+...+ ++.|..|. .+|.+|..+..|+.+.
T Consensus 440 ~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vc 518 (524)
T KOG0273|consen 440 ESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVC 518 (524)
T ss_pred cCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCce
Confidence 89999999999999999976 59999999999999999975 889888877 45688887 4888988888999999
Q ss_pred eeecc
Q 001123 522 GWNVT 526 (1149)
Q Consensus 522 lWdl~ 526 (1149)
+-|+.
T Consensus 519 vldlr 523 (524)
T KOG0273|consen 519 VLDLR 523 (524)
T ss_pred EEEec
Confidence 88763
No 58
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.89 E-value=2.1e-20 Score=201.93 Aligned_cols=264 Identities=21% Similarity=0.275 Sum_probs=195.4
Q ss_pred eEEEEEee--CCeEEEe-CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEe
Q 001123 134 FLRTIVCT--EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (1149)
Q Consensus 134 ~l~~l~~~--~~~l~ag-~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS 210 (1149)
.+..++.+ .+.++++ .|+.|++|++.++..... ...+ ...+.++.|+++++.|++++
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~-~~~i~~~~~~~~~~~l~~~~ 70 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT-------------------LKGH-TGPVRDVAASADGTYLASGS 70 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEE-------------------EecC-CcceeEEEECCCCCEEEEEc
Confidence 34455554 3555555 489999999886543221 1122 56788999999999999999
Q ss_pred CCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEE
Q 001123 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (1149)
Q Consensus 211 ~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~ 289 (1149)
.||.|++|++.++. ....+.+|.+.|.++.|+++++ +++++.|+.|++||+.+++....+..
T Consensus 71 ~~~~i~i~~~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--------- 133 (289)
T cd00200 71 SDKTIRLWDLETGE--------CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG--------- 133 (289)
T ss_pred CCCeEEEEEcCccc--------ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc---------
Confidence 99999999998753 3667889999999999999987 56677799999999976543322211
Q ss_pred eeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccc
Q 001123 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (1149)
Q Consensus 290 ~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~ 368 (1149)
| ...+.++.+.+++..+++++ ++.+++||+++++++..+..+...+.
T Consensus 134 ----------~----------~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~------------ 181 (289)
T cd00200 134 ----------H----------TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVN------------ 181 (289)
T ss_pred ----------C----------CCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccc------------
Confidence 1 13466777778777888777 78999999999888887765443322
Q ss_pred cccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec------ccccCCCCceEEEEEcCCCcE-EEEeCCCe
Q 001123 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDDNRRTEALTTSIDGMI-WTGGANGL 441 (1149)
Q Consensus 369 ~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~------g~~~~~~~~V~ava~s~Dg~l-aSgs~Dgt 441 (1149)
.+.+.+++..++++..++..++++. ..+..+...+.++.+++++.+ ++++.|+.
T Consensus 182 -------------------~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 242 (289)
T cd00200 182 -------------------SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT 242 (289)
T ss_pred -------------------eEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc
Confidence 2334444445555555665555542 234466678899999998875 45555999
Q ss_pred EEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEe
Q 001123 442 LLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (1149)
Q Consensus 442 IrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD 485 (1149)
|++||+ +++.+..+.+|...|.++++ +|++|++++.||.|++||
T Consensus 243 i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 243 IRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999 68999999999999999876 579999999999999997
No 59
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.89 E-value=1.1e-20 Score=241.85 Aligned_cols=272 Identities=16% Similarity=0.182 Sum_probs=186.0
Q ss_pred ceeEEEEEee--CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcC-CCCEEE
Q 001123 132 GCFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVW 207 (1149)
Q Consensus 132 ~~~l~~l~~~--~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~-dg~~La 207 (1149)
...+..++.+ ++.+.+ |.|++|+|||+.+...... ....+... +.+...|.+++|++ ++.+|+
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~------------~~~~~~~~-~~~~~~v~~l~~~~~~~~~la 549 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR------------DIHYPVVE-LASRSKLSGICWNSYIKSQVA 549 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc------------ccccceEE-ecccCceeeEEeccCCCCEEE
Confidence 3445666665 344444 5699999999864221110 00111111 22256789999987 478999
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeC-CCc-EEEEECCCcEEEEeCCCcceeeecCCCccee
Q 001123 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (1149)
Q Consensus 208 SGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSp-dG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~ 285 (1149)
||+.||+|++||+.++. .+..+.+|.+.|++|+|+| ++. |+|||.|++||+||+.++.....+..
T Consensus 550 s~~~Dg~v~lWd~~~~~--------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~----- 616 (793)
T PLN00181 550 SSNFEGVVQVWDVARSQ--------LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT----- 616 (793)
T ss_pred EEeCCCeEEEEECCCCe--------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec-----
Confidence 99999999999998754 3677899999999999997 665 78999999999999977543322210
Q ss_pred eEEEeeeccccccccccccceeeeecCCeEEEEE-cCCCCEEEEec-CCceEEEEcCCcc-EEEEEecCCceeeEEeecc
Q 001123 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS-DHSRAKVWSAG-FLSFALWDARTRE-LLKVFNIDGQIENRVDMSL 362 (1149)
Q Consensus 286 ~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las-~~~~~~v~Sas-d~tIrLWD~~TG~-~L~~l~~~g~~~~~v~~S~ 362 (1149)
...+.++.+ .+++..+++++ |++|++||++++. .+.++.+|...+..+.
T Consensus 617 -------------------------~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~--- 668 (793)
T PLN00181 617 -------------------------KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVR--- 668 (793)
T ss_pred -------------------------CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEE---
Confidence 023444555 34566666654 6789999998765 4555655554433333
Q ss_pred CCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec------------ccccCCCCceEEEEEcCC
Q 001123 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------------GGFGDDNRRTEALTTSID 430 (1149)
Q Consensus 363 ~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~------------g~~~~~~~~V~ava~s~D 430 (1149)
|. ++..+++++.|+..++|+. ..+.+|...+..+.++++
T Consensus 669 ----------------------------f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~ 719 (793)
T PLN00181 669 ----------------------------FV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVS 719 (793)
T ss_pred ----------------------------Ee-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCC
Confidence 32 2334566666666666642 135677778888999998
Q ss_pred Cc-EEEEeCCCeEEEEeC-CCCeeEe-------------eecCCccEEEEEe--cCCEEEEeecCcEEEEEeC
Q 001123 431 GM-IWTGGANGLLLQWDP-NGNRLQD-------------FQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDL 486 (1149)
Q Consensus 431 g~-laSgs~DgtIrlWD~-tG~~l~t-------------l~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~ 486 (1149)
+. |++|+.|++|++|+. .+..+.. +..|...|.++++ +|.+|++|+.||+|+|||+
T Consensus 720 ~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 720 DGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 75 889999999999998 4433322 1234556888876 6899999999999999985
No 60
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.88 E-value=7e-21 Score=204.45 Aligned_cols=273 Identities=17% Similarity=0.180 Sum_probs=195.7
Q ss_pred ceeEEEEEee-CCeEEE--eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEE
Q 001123 132 GCFLRTIVCT-EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (1149)
Q Consensus 132 ~~~l~~l~~~-~~~l~a--g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaS 208 (1149)
.-.+.++..+ ++..+| |.|..|-+|++- +.+.. .. ...+| .++|+-|.|..|+..|+|
T Consensus 47 ~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~-gdceN---------------~~--~lkgH-sgAVM~l~~~~d~s~i~S 107 (338)
T KOG0265|consen 47 KGEIYTIKFHPDGSCFASGGSDRAIVLWNVY-GDCEN---------------FW--VLKGH-SGAVMELHGMRDGSHILS 107 (338)
T ss_pred cceEEEEEECCCCCeEeecCCcceEEEEecc-ccccc---------------ee--eeccc-cceeEeeeeccCCCEEEE
Confidence 3455566665 556665 569999999964 22211 11 11234 899999999999999999
Q ss_pred EeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc--EEEEECCCcEEEEeCCCcceeeecCCCcceee
Q 001123 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (1149)
Q Consensus 209 GS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~--L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~ 286 (1149)
+|.|.+|+.||+++|++ +..+++|.+-|+++.-+.-|. +.|||.|+|+||||+.+.++..++.
T Consensus 108 ~gtDk~v~~wD~~tG~~--------~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~------- 172 (338)
T KOG0265|consen 108 CGTDKTVRGWDAETGKR--------IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE------- 172 (338)
T ss_pred ecCCceEEEEeccccee--------eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-------
Confidence 99999999999999874 778999999999999665564 4699999999999997654433221
Q ss_pred EEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCC
Q 001123 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (1149)
Q Consensus 287 a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~ 365 (1149)
...++.++.+...+..+.|++ |+.|++||++.++.+.++++|...+..+..++.+.
T Consensus 173 -----------------------~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs 229 (338)
T KOG0265|consen 173 -----------------------NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS 229 (338)
T ss_pred -----------------------cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCC
Confidence 013456677777788888887 56799999999999999999988877666666555
Q ss_pred ccccccce--eeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCC----ceEEEEEcCCCc-EEEEeC
Q 001123 366 FAMEDEFK--TKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR----RTEALTTSIDGM-IWTGGA 438 (1149)
Q Consensus 366 ~~~~~~~~--~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~----~V~ava~s~Dg~-laSgs~ 438 (1149)
.+....+. +++|.-......+..+. .|.++.. ..-..+++|++. +-+|+.
T Consensus 230 ~llsnsMd~tvrvwd~rp~~p~~R~v~-----------------------if~g~~hnfeknlL~cswsp~~~~i~ags~ 286 (338)
T KOG0265|consen 230 FLLSNSMDNTVRVWDVRPFAPSQRCVK-----------------------IFQGHIHNFEKNLLKCSWSPNGTKITAGSA 286 (338)
T ss_pred ccccccccceEEEEEecccCCCCceEE-----------------------EeecchhhhhhhcceeeccCCCCccccccc
Confidence 44433221 12222111111111111 1222222 122356889887 778999
Q ss_pred CCeEEEEeCCC-CeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEE
Q 001123 439 NGLLLQWDPNG-NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVL 484 (1149)
Q Consensus 439 DgtIrlWD~tG-~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlW 484 (1149)
|+.+.+||.++ .++..+.||...|+++.+ .-.+|.+++.|.+|.+=
T Consensus 287 dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 287 DRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred cceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 99999999976 788999999999999976 57899999999999873
No 61
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2e-21 Score=208.43 Aligned_cols=266 Identities=18% Similarity=0.222 Sum_probs=199.8
Q ss_pred eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEEC------C
Q 001123 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM------N 221 (1149)
Q Consensus 148 g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl------~ 221 (1149)
+.|.|.++|.+++|.|+.. ...| .++|+|+.|++.+.++++||-|++..+|.. .
T Consensus 167 SADhTA~iWs~Esg~CL~~-------------------Y~GH-~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP 226 (481)
T KOG0300|consen 167 SADHTARIWSLESGACLAT-------------------YTGH-TGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVP 226 (481)
T ss_pred ccccceeEEeeccccceee-------------------eccc-ccceeeEEeccccceEEEccCCcchHHHHHhhcCcCC
Confidence 4599999999999998754 2234 899999999999999999999999999982 1
Q ss_pred CCC------------C--------------CCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcce
Q 001123 222 ARL------------L--------------DSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEK 274 (1149)
Q Consensus 222 ~g~------------~--------------~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~ 274 (1149)
... + ++.....++..|.||.+.|.+.-+-..|+ +++||+|.|..+||+++++.
T Consensus 227 ~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~ 306 (481)
T KOG0300|consen 227 SNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEV 306 (481)
T ss_pred CCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCce
Confidence 100 0 00122334567899999999998887776 89999999999999999987
Q ss_pred eeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCc
Q 001123 275 ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQ 353 (1149)
Q Consensus 275 ~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~ 353 (1149)
...++++...+ ...+.-+...+|++++ |.|+||||.+- .++.
T Consensus 307 v~~LtGHd~EL-----------------------------tHcstHptQrLVvTsSrDtTFRLWDFRe--aI~s------ 349 (481)
T KOG0300|consen 307 VNILTGHDSEL-----------------------------THCSTHPTQRLVVTSSRDTTFRLWDFRE--AIQS------ 349 (481)
T ss_pred eccccCcchhc-----------------------------cccccCCcceEEEEeccCceeEeccchh--hcce------
Confidence 76666543322 2222222333444444 56899999751 1110
Q ss_pred eeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCcE
Q 001123 354 IENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMI 433 (1149)
Q Consensus 354 ~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~l 433 (1149)
+ ..|.+|...|.++.|.-|..+
T Consensus 350 -----------------------------------V-----------------------~VFQGHtdtVTS~vF~~dd~v 371 (481)
T KOG0300|consen 350 -----------------------------------V-----------------------AVFQGHTDTVTSVVFNTDDRV 371 (481)
T ss_pred -----------------------------------e-----------------------eeecccccceeEEEEecCCce
Confidence 0 127788888999999999999
Q ss_pred EEEeCCCeEEEEeC-C-CCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCCCceee-----eeeccCCCeEEE
Q 001123 434 WTGGANGLLLQWDP-N-GNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLG-----GWVAHSSPVIKM 504 (1149)
Q Consensus 434 aSgs~DgtIrlWD~-t-G~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~G~~l~-----~l~gH~~~V~sL 504 (1149)
++||.|.|||+||+ + ...+.++.. .++++-++. .++.||.--....|||+|++|+.+. .-+||.-.|.+.
T Consensus 372 VSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~ 450 (481)
T KOG0300|consen 372 VSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCC 450 (481)
T ss_pred eecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeee
Confidence 99999999999999 4 467777765 467777755 4568888888899999999987554 455999999999
Q ss_pred Ee-c---CCeEEeecCCCceeeeeccCCC
Q 001123 505 AV-G---AGYIFTLANHGGIRGWNVTSPG 529 (1149)
Q Consensus 505 a~-D---g~~LaSgS~DgtIRlWdl~sp~ 529 (1149)
++ + -.-|+|++-|..+-.|.+..|.
T Consensus 451 AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 451 AWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred eccccCcccccccccccceeeeeEecccC
Confidence 84 2 1468899999999999998764
No 62
>PTZ00420 coronin; Provisional
Probab=99.87 E-value=3e-20 Score=225.02 Aligned_cols=225 Identities=15% Similarity=0.151 Sum_probs=156.0
Q ss_pred CCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc--EEEEECCCcEEEE
Q 001123 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIW 267 (1149)
Q Consensus 191 ~~~V~~lafs~d-g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~--L~SGS~DgTIRVW 267 (1149)
.++|.+++|+|+ +.+||||+.||+||+||+.++.........+...+.||.+.|++|+|+|++. |+|||.|++|+||
T Consensus 74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIW 153 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIW 153 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEE
Confidence 789999999997 7899999999999999997542100000123456899999999999999986 5799999999999
Q ss_pred eCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEE
Q 001123 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (1149)
Q Consensus 268 dl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~ 346 (1149)
|+.+++....+. ....+.++++++++..+++++ |++|+|||+++++++.
T Consensus 154 Dl~tg~~~~~i~------------------------------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 154 DIENEKRAFQIN------------------------------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred ECCCCcEEEEEe------------------------------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE
Confidence 998765332211 013466788888888887665 7889999999999888
Q ss_pred EEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEE
Q 001123 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (1149)
Q Consensus 347 ~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava 426 (1149)
++.+|..... .+. +....
T Consensus 204 tl~gH~g~~~-------------------------------------------------s~~-------------v~~~~ 221 (568)
T PTZ00420 204 SFHIHDGGKN-------------------------------------------------TKN-------------IWIDG 221 (568)
T ss_pred EEecccCCce-------------------------------------------------eEE-------------EEeee
Confidence 8765543200 000 01112
Q ss_pred EcCCC-cEEEEeCCC----eEEEEeC-C-CCeeEeeecCC--ccEEEE-Ee-cCCEEEEeecCcEEEEEeCC-Cc--eee
Q 001123 427 TSIDG-MIWTGGANG----LLLQWDP-N-GNRLQDFQYLP--FAVQCL-CT-FGSQIWVGYMNGIVQVLDLE-GN--LLG 492 (1149)
Q Consensus 427 ~s~Dg-~laSgs~Dg----tIrlWD~-t-G~~l~tl~gH~--~~V~sl-s~-dG~~LaSGs~DGtIrlWD~~-G~--~l~ 492 (1149)
+++++ .|++++.|+ +|+|||+ + ++++.++..+. +.+..+ .. +|.++++|+.|++||+|++. +. .+.
T Consensus 222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~ 301 (568)
T PTZ00420 222 LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVN 301 (568)
T ss_pred EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeec
Confidence 45554 477777664 7999999 3 67777664433 233222 12 48999999999999999976 43 233
Q ss_pred eeeccCCCeEEEEecC
Q 001123 493 GWVAHSSPVIKMAVGA 508 (1149)
Q Consensus 493 ~l~gH~~~V~sLa~Dg 508 (1149)
.+. |..++.++++-+
T Consensus 302 ~~~-s~~p~~g~~f~P 316 (568)
T PTZ00420 302 EYK-SCSPFRSFGFLP 316 (568)
T ss_pred ccc-cCCCccceEEcc
Confidence 333 556666666433
No 63
>PTZ00421 coronin; Provisional
Probab=99.87 E-value=2.5e-20 Score=224.15 Aligned_cols=247 Identities=14% Similarity=0.133 Sum_probs=171.7
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCC-C----CCCccceEEeecCCCCEEEEEEeC-CCc-EEEEECCCcEE
Q 001123 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLD-S----DDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGIK 265 (1149)
Q Consensus 193 ~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~-~----~~~~~~~~~l~GH~~~VtsVafSp-dG~-L~SGS~DgTIR 265 (1149)
.|.+..+++|+..+++++.+..+..|+..++.+. . .+.......+.||+++|++++|+| ++. |+|||.|++|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 4566777888888999999999999987665420 0 000011224789999999999999 665 89999999999
Q ss_pred EEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCC-CEEEEec-CCceEEEEcCCcc
Q 001123 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTRE 343 (1149)
Q Consensus 266 VWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~-~~v~Sas-d~tIrLWD~~TG~ 343 (1149)
+||+.+....... ...+ ..+.+|. ..|.++++.+.+ ..+++++ |++|+|||+.+++
T Consensus 102 IWdi~~~~~~~~~---~~~l---------~~L~gH~----------~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~ 159 (493)
T PTZ00421 102 GWGIPEEGLTQNI---SDPI---------VHLQGHT----------KKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK 159 (493)
T ss_pred EEecCCCcccccc---Ccce---------EEecCCC----------CcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe
Confidence 9999753211000 0000 0122232 567788888765 4677765 6889999999876
Q ss_pred EEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceE
Q 001123 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (1149)
Q Consensus 344 ~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ 423 (1149)
.+..+. +|...|.
T Consensus 160 ~~~~l~-------------------------------------------------------------------~h~~~V~ 172 (493)
T PTZ00421 160 AVEVIK-------------------------------------------------------------------CHSDQIT 172 (493)
T ss_pred EEEEEc-------------------------------------------------------------------CCCCceE
Confidence 655443 2333456
Q ss_pred EEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEE-EEE--ecCCEEEEee----cCcEEEEEeCC--Cceee
Q 001123 424 ALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQ-CLC--TFGSQIWVGY----MNGIVQVLDLE--GNLLG 492 (1149)
Q Consensus 424 ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~-sls--~dG~~LaSGs----~DGtIrlWD~~--G~~l~ 492 (1149)
+++++++|. +++|+.|++|++||+ +|+++.++.+|...+. .+. .++..|++++ .|++|++||+. .+++.
T Consensus 173 sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~ 252 (493)
T PTZ00421 173 SLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS 252 (493)
T ss_pred EEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee
Confidence 777888886 789999999999999 8999999999987543 222 3556666543 58999999975 34555
Q ss_pred eeeccCCC-eEEEE--ecCCeEEeec-CCCceeeeeccCC
Q 001123 493 GWVAHSSP-VIKMA--VGAGYIFTLA-NHGGIRGWNVTSP 528 (1149)
Q Consensus 493 ~l~gH~~~-V~sLa--~Dg~~LaSgS-~DgtIRlWdl~sp 528 (1149)
....|... +.... +|+++|++++ .|++||+||+...
T Consensus 253 ~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 253 TVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 55545443 33333 5888999887 5999999998753
No 64
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.87 E-value=1.3e-21 Score=217.04 Aligned_cols=255 Identities=17% Similarity=0.280 Sum_probs=188.1
Q ss_pred CeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001123 143 EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (1149)
Q Consensus 143 ~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~~LaSGS~DGtIRvWdl 220 (1149)
+.|.. |.|.-|++|++...... +..++.| .++|+.+.|+++++.+++++.|+.+|+|++
T Consensus 188 dtlatgg~Dr~Ik~W~v~~~k~~-------------------~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 188 DTLATGGSDRIIKLWNVLGEKSE-------------------LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred chhhhcchhhhhhhhhcccchhh-------------------hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 44444 56999999998744421 2223455 678999999999999999999999999999
Q ss_pred CCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccc
Q 001123 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRS 299 (1149)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~ 299 (1149)
+..+ ...+|.||++.|+++.|..... ++|||.|.|||+||+....+..+.-+.
T Consensus 249 d~~r--------~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~------------------ 302 (459)
T KOG0288|consen 249 DSLR--------LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG------------------ 302 (459)
T ss_pred cchh--------hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc------------------
Confidence 8865 4678999999999999987654 899999999999999775554332111
Q ss_pred cccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEe
Q 001123 300 HLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVT 378 (1149)
Q Consensus 300 ~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s 378 (1149)
+.+..++++ ...+.|+- |++||+||.+++.+..+...+|
T Consensus 303 ------------S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-------------------------- 342 (459)
T KOG0288|consen 303 ------------SQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-------------------------- 342 (459)
T ss_pred ------------ccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc--------------------------
Confidence 122222222 12233332 5679999999877766554333
Q ss_pred cCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeee
Q 001123 379 SSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQ 456 (1149)
Q Consensus 379 ~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~ 456 (1149)
.|.+|..+++|. +.+.+.|.++.+.|+ +-+..+++.
T Consensus 343 ------------------------------------------~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~s 380 (459)
T KOG0288|consen 343 ------------------------------------------RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFS 380 (459)
T ss_pred ------------------------------------------ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEee
Confidence 344556677776 788899999999999 445556665
Q ss_pred c------CCccEEEEEecCCEEEEeecCcEEEEEeCC-CceeeeeeccCCC--eEEEEe--cCCeEEeecCCCceeeee
Q 001123 457 Y------LPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSP--VIKMAV--GAGYIFTLANHGGIRGWN 524 (1149)
Q Consensus 457 g------H~~~V~sls~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~--V~sLa~--Dg~~LaSgS~DgtIRlWd 524 (1149)
. |.-.-..++++|.|+|+||.||.|+||++. |++...+...... |+++++ .|.++++++.++.+++|.
T Consensus 381 A~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 381 AEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 4 322222557789999999999999999975 8887777765554 999985 788999999999999993
No 65
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.87 E-value=3.5e-20 Score=203.36 Aligned_cols=285 Identities=13% Similarity=0.115 Sum_probs=201.6
Q ss_pred eEEEEEee-CCeEEE--eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEe
Q 001123 134 FLRTIVCT-EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (1149)
Q Consensus 134 ~l~~l~~~-~~~l~a--g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS 210 (1149)
.+.+++++ ...+.+ |.|.-..||++.+|..+.. -+.| ..+|.|+.||.||.+||||.
T Consensus 66 svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~e-------------------ltgH-KDSVt~~~FshdgtlLATGd 125 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGE-------------------LTGH-KDSVTCCSFSHDGTLLATGD 125 (399)
T ss_pred ceEEEEeCCCCceEEecCCCceEEEEEccCCcceeE-------------------ecCC-CCceEEEEEccCceEEEecC
Confidence 44466666 445544 4688899999987774432 1234 88999999999999999999
Q ss_pred CCCeEEEEECCCCCC---------------------------CC-------CCCccceEEeecCCCCEEEEEEeCCCc-E
Q 001123 211 RDGRIMCWKMNARLL---------------------------DS-------DDGFGEVLSWQAHRGPVLSLCISSYGD-L 255 (1149)
Q Consensus 211 ~DGtIRvWdl~~g~~---------------------------~~-------~~~~~~~~~l~GH~~~VtsVafSpdG~-L 255 (1149)
.+|.|+||++.++.. .+ ...-..++.+.||..++++=.|.|||+ +
T Consensus 126 msG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~ 205 (399)
T KOG0296|consen 126 MSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRI 205 (399)
T ss_pred CCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceE
Confidence 999999999987651 00 011144567889999999999999998 8
Q ss_pred EEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCce
Q 001123 256 WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSF 334 (1149)
Q Consensus 256 ~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tI 334 (1149)
++|..|||||+||+.++++....+..+. ....++..+..+..+.+++ +..+
T Consensus 206 ~tgy~dgti~~Wn~ktg~p~~~~~~~e~----------------------------~~~~~~~~~~~~~~~~~g~~e~~~ 257 (399)
T KOG0296|consen 206 LTGYDDGTIIVWNPKTGQPLHKITQAEG----------------------------LELPCISLNLAGSTLTKGNSEGVA 257 (399)
T ss_pred EEEecCceEEEEecCCCceeEEeccccc----------------------------CcCCccccccccceeEeccCCccE
Confidence 9999999999999999887766543321 1112233333344444443 3456
Q ss_pred EEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecc-
Q 001123 335 ALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG- 413 (1149)
Q Consensus 335 rLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g- 413 (1149)
.+-+..+|+.+..+++.... ..+..+.. ...+.++.+...-...++|..||...+|+.+
T Consensus 258 ~~~~~~sgKVv~~~n~~~~~-----l~~~~e~~---------------~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~ 317 (399)
T KOG0296|consen 258 CGVNNGSGKVVNCNNGTVPE-----LKPSQEEL---------------DESVESIPSSSKLPLAACGSVDGTIAIYDLAA 317 (399)
T ss_pred EEEccccceEEEecCCCCcc-----ccccchhh---------------hhhhhhcccccccchhhcccccceEEEEeccc
Confidence 77777888887777642211 00000000 0111112222222345678888888887632
Q ss_pred ----cccCCCCceEEEEEcCCCcEEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEE--ecCCEEEEeecCcEEEEEeC
Q 001123 414 ----GFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDL 486 (1149)
Q Consensus 414 ----~~~~~~~~V~ava~s~Dg~laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls--~dG~~LaSGs~DGtIrlWD~ 486 (1149)
....|...|..+.+-++..|++++.||+|++||. +|+++.++.||...|++++ +++++++++|.|++.+|+++
T Consensus 318 ~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 318 STLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred chhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 3356777899999888778999999999999999 9999999999999999885 47999999999999999985
No 66
>PTZ00421 coronin; Provisional
Probab=99.87 E-value=1.3e-19 Score=217.92 Aligned_cols=222 Identities=13% Similarity=0.159 Sum_probs=155.3
Q ss_pred CCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCC-c-EEEEECCCcEEEE
Q 001123 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIW 267 (1149)
Q Consensus 191 ~~~V~~lafs~-dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG-~-L~SGS~DgTIRVW 267 (1149)
.++|.+++|+| ++.+|+|||.||+|++||+.++.. ......++..+.||...|.+|+|+|++ . |+|||.|++||||
T Consensus 75 ~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~-~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIW 153 (493)
T PTZ00421 75 EGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGL-TQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVW 153 (493)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcc-ccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEE
Confidence 88999999999 889999999999999999976421 011123466789999999999999986 3 8999999999999
Q ss_pred eCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEE
Q 001123 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (1149)
Q Consensus 268 dl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~ 346 (1149)
|+++++....+. +| ...+.++++++++..+++++ |++|++||+++++.+.
T Consensus 154 Dl~tg~~~~~l~-------------------~h----------~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~ 204 (493)
T PTZ00421 154 DVERGKAVEVIK-------------------CH----------SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS 204 (493)
T ss_pred ECCCCeEEEEEc-------------------CC----------CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE
Confidence 998765433221 12 14577788888888888776 6789999999998877
Q ss_pred EEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEE
Q 001123 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (1149)
Q Consensus 347 ~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava 426 (1149)
.+.+|.... +..+.
T Consensus 205 tl~~H~~~~------------------------------------------------------------------~~~~~ 218 (493)
T PTZ00421 205 SVEAHASAK------------------------------------------------------------------SQRCL 218 (493)
T ss_pred EEecCCCCc------------------------------------------------------------------ceEEE
Confidence 765543210 00011
Q ss_pred EcCC-CcEEEE----eCCCeEEEEeC-CC-CeeEeeecCCc-cEEEE--EecCCEEEEee-cCcEEEEEeCC-Cceeeee
Q 001123 427 TSID-GMIWTG----GANGLLLQWDP-NG-NRLQDFQYLPF-AVQCL--CTFGSQIWVGY-MNGIVQVLDLE-GNLLGGW 494 (1149)
Q Consensus 427 ~s~D-g~laSg----s~DgtIrlWD~-tG-~~l~tl~gH~~-~V~sl--s~dG~~LaSGs-~DGtIrlWD~~-G~~l~~l 494 (1149)
+.++ +.++++ +.|++|++||+ +. .++.....|.. .+... ..++++|++|+ .||+|++||+. ++++..+
T Consensus 219 w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 219 WAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred EcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 2222 334433 35899999999 43 55665554443 33333 34689999888 49999999976 6665554
Q ss_pred ec-cCCCeEEEEecC
Q 001123 495 VA-HSSPVIKMAVGA 508 (1149)
Q Consensus 495 ~g-H~~~V~sLa~Dg 508 (1149)
.. +..++..+++-.
T Consensus 299 ~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 299 SYSSVEPHKGLCMMP 313 (493)
T ss_pred eccCCCCCcceEecc
Confidence 43 444556665433
No 67
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.87 E-value=4.1e-21 Score=223.92 Aligned_cols=229 Identities=20% Similarity=0.308 Sum_probs=183.7
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEE-EEEeC-C-CcEEEEECCCcEEEE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLS-LCISS-Y-GDLWSGSEGGGIKIW 267 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~Vts-VafSp-d-G~L~SGS~DgTIRVW 267 (1149)
.+-|..+++-+ +.+++|||+||++|+|+-..+.. -+...+++|.+.|.. +++-+ + ++|++|+.|++|.+|
T Consensus 14 ~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~------l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~ 86 (745)
T KOG0301|consen 14 KSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQY------LETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVF 86 (745)
T ss_pred ccchheeEecC-CeEEeecCCCCceeeeeccCccc------ccceecccCcceeeccceeccccCcceEeecccceEEEE
Confidence 66676666544 45899999999999999866442 335668999999888 88875 3 349999999999999
Q ss_pred eCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEE
Q 001123 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (1149)
Q Consensus 268 dl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~ 346 (1149)
.+.+..+...+.+| . +.|-++....++. +.|++ |.|+++|-. |++..
T Consensus 87 ~~~~~~P~~~LkgH-------------------~----------snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~ 134 (745)
T KOG0301|consen 87 KLSQAEPLYTLKGH-------------------K----------SNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVY 134 (745)
T ss_pred ecCCCCchhhhhcc-------------------c----------cceeeeecCCcCc-eEecccccceEEecc--hhhhc
Confidence 99887766655433 2 4455555556555 66666 567999964 22211
Q ss_pred EEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEE
Q 001123 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (1149)
Q Consensus 347 ~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava 426 (1149)
+ +.+|...|.+|+
T Consensus 135 ~-------------------------------------------------------------------l~gH~asVWAv~ 147 (745)
T KOG0301|consen 135 S-------------------------------------------------------------------LQGHTASVWAVA 147 (745)
T ss_pred c-------------------------------------------------------------------cCCcchheeeee
Confidence 1 346666777888
Q ss_pred EcCCCcEEEEeCCCeEEEEeCCCCeeEeeecCCccEEEEEe-cCCEEEEeecCcEEEEEeCCCceeeeeeccCCCeEEEE
Q 001123 427 TSIDGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMA 505 (1149)
Q Consensus 427 ~s~Dg~laSgs~DgtIrlWD~tG~~l~tl~gH~~~V~sls~-dG~~LaSGs~DGtIrlWD~~G~~l~~l~gH~~~V~sLa 505 (1149)
.-|++.++|||+|.+||+|.. |+++++|.||++-|..++. ++..++|++.||.|++||++|.++..+.||+.-|++++
T Consensus 148 ~l~e~~~vTgsaDKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis 226 (745)
T KOG0301|consen 148 SLPENTYVTGSADKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSIS 226 (745)
T ss_pred ecCCCcEEeccCcceeeeccC-CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccceEEEEEE
Confidence 778889999999999999987 8999999999999999986 67799999999999999999999999999999999998
Q ss_pred --ecCCeEEeecCCCceeeeecc
Q 001123 506 --VGAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 506 --~Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
.+++.++|+|.|+|+|+|+..
T Consensus 227 ~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 227 MALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ecCCCCeEEEecCCceEEEeecC
Confidence 588899999999999999953
No 68
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=3e-20 Score=219.97 Aligned_cols=277 Identities=16% Similarity=0.163 Sum_probs=199.2
Q ss_pred CCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCC
Q 001123 150 ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDD 229 (1149)
Q Consensus 150 D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~ 229 (1149)
.|.|++||-.=+.++.. |-+ | .+||..++|.|+..+++||+.|-+||||+..+.+|
T Consensus 30 sG~IQlWDYRM~tli~r-----------------Fde--H-dGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc---- 85 (1202)
T KOG0292|consen 30 SGVIQLWDYRMGTLIDR-----------------FDE--H-DGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC---- 85 (1202)
T ss_pred CceeeeehhhhhhHHhh-----------------hhc--c-CCccceeeecCCCCeEEecCCccEEEEEeccccee----
Confidence 67899999654433332 222 4 78999999999999999999999999999988665
Q ss_pred CccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceee
Q 001123 230 GFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSS 308 (1149)
Q Consensus 230 ~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~ 308 (1149)
+.+|.||-+.|..+.|++.-- ++|+|.|.|||||++++..+...+++|.
T Consensus 86 ----lftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHn-------------------------- 135 (1202)
T KOG0292|consen 86 ----LFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHN-------------------------- 135 (1202)
T ss_pred ----hhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCc--------------------------
Confidence 788999999999999998643 8999999999999999987776665443
Q ss_pred eecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeecc-CCCccccccceeeEEecCCCCccc
Q 001123 309 ILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSL-LPDFAMEDEFKTKIVTSSKKDKAQ 386 (1149)
Q Consensus 309 ~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~-~~~~~~~~~~~~~~~s~~~k~~~~ 386 (1149)
..|.|..+-+....++|++ |.|||+||+..-+ .+...+ +.....+.... +.+.....+.-++ .--.+|+..+
T Consensus 136 ---HYVMcAqFhptEDlIVSaSLDQTVRVWDisGLR-kk~~~p-g~~e~~~~~~~~~~dLfg~~DaVVK-~VLEGHDRGV 209 (1202)
T KOG0292|consen 136 ---HYVMCAQFHPTEDLIVSASLDQTVRVWDISGLR-KKNKAP-GSLEDQMRGQQGNSDLFGQTDAVVK-HVLEGHDRGV 209 (1202)
T ss_pred ---eEEEeeccCCccceEEEecccceEEEEeecchh-ccCCCC-CCchhhhhccccchhhcCCcCeeee-eeeccccccc
Confidence 3455666667677888887 7899999985311 111111 11110000000 0011000000001 1234677788
Q ss_pred eeeeeeccccceEeecCCcEEEEee--------cccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeee
Q 001123 387 SSFGFFQRSRNAIMGAADAVRRVAA--------KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQ 456 (1149)
Q Consensus 387 ~si~f~~~~~~~i~G~~d~v~rv~~--------~g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~ 456 (1149)
...+|.|..-.+++|+.|--.++|- .-+..+|...|.++.|.|... |+|.|+|++||+||+ ..+++++|+
T Consensus 210 NwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 210 NWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred ceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeee
Confidence 8888998888889999987666653 236789999999999999755 789999999999999 568899998
Q ss_pred cCCccEEEEEe--cCCEEEEeecCcEEEEEeCC
Q 001123 457 YLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 457 gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~ 487 (1149)
...+.-+.++. .++.+|+|-..| +.|+-++
T Consensus 290 rendRFW~laahP~lNLfAAgHDsG-m~VFkle 321 (1202)
T KOG0292|consen 290 RENDRFWILAAHPELNLFAAGHDSG-MIVFKLE 321 (1202)
T ss_pred ccCCeEEEEEecCCcceeeeecCCc-eEEEEEc
Confidence 77777777764 578888775555 6688766
No 69
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.86 E-value=7.8e-21 Score=199.16 Aligned_cols=236 Identities=19% Similarity=0.262 Sum_probs=186.2
Q ss_pred eec-CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEE
Q 001123 188 VKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (1149)
Q Consensus 188 ~~G-~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIR 265 (1149)
..| .++|.....+.+..+-|||+.|-+.|+||.-+|. ++.+|+ |+..|.+++|+.|.. |++|+.++.+|
T Consensus 55 feghkgavw~~~l~~na~~aasaaadftakvw~a~tgd--------elhsf~-hkhivk~~af~~ds~~lltgg~ekllr 125 (334)
T KOG0278|consen 55 FEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGD--------ELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLR 125 (334)
T ss_pred eeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhh--------hhhhhh-hhheeeeEEecccchhhhccchHHHhh
Confidence 345 8899999999999999999999999999998875 466664 999999999999986 99999999999
Q ss_pred EEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEe-cCCceEEEEcCCccE
Q 001123 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTREL 344 (1149)
Q Consensus 266 VWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sa-sd~tIrLWD~~TG~~ 344 (1149)
|+|++..+... ..+.+|. +.++.+.+.+.+..+.|+ .+++|||||.+||..
T Consensus 126 vfdln~p~App------------------~E~~ght----------g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~ 177 (334)
T KOG0278|consen 126 VFDLNRPKAPP------------------KEISGHT----------GGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE 177 (334)
T ss_pred hhhccCCCCCc------------------hhhcCCC----------CcceeEEEeccCceEEeeccCCceEEEEeccCcE
Confidence 99997633110 1122332 567777787877777764 568999999999988
Q ss_pred EEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEE
Q 001123 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (1149)
Q Consensus 345 L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~a 424 (1149)
+++|.-.. .|.+
T Consensus 178 v~sL~~~s--------------------------------------------------------------------~VtS 189 (334)
T KOG0278|consen 178 VQSLEFNS--------------------------------------------------------------------PVTS 189 (334)
T ss_pred EEEEecCC--------------------------------------------------------------------CCcc
Confidence 88764222 2334
Q ss_pred EEEcCCCcEEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEE--EecCCEEEEeecCcEEEEEeC-CCceeeee-eccCC
Q 001123 425 LTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDL-EGNLLGGW-VAHSS 499 (1149)
Q Consensus 425 va~s~Dg~laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sl--s~dG~~LaSGs~DGtIrlWD~-~G~~l~~l-~gH~~ 499 (1149)
+-.++||.+++-...++|++||. +-..+..... +..|.+. .++-..+++|+.|..++.+|. +|..+..+ +||-+
T Consensus 190 lEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~g 268 (334)
T KOG0278|consen 190 LEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFG 268 (334)
T ss_pred eeeccCCCEEEEecCceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCC
Confidence 45788888888777889999999 4466666544 3455544 556789999999999999995 58887776 89999
Q ss_pred CeEEEE--ecCCeEEeecCCCceeeeeccCCC
Q 001123 500 PVIKMA--VGAGYIFTLANHGGIRGWNVTSPG 529 (1149)
Q Consensus 500 ~V~sLa--~Dg~~LaSgS~DgtIRlWdl~sp~ 529 (1149)
+|.+|. |||..-+|||.|||||+|......
T Consensus 269 pVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 269 PVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 999997 799999999999999999976433
No 70
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.86 E-value=1.7e-20 Score=201.38 Aligned_cols=281 Identities=14% Similarity=0.142 Sum_probs=173.7
Q ss_pred eecCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-------CC---CCCCccceEEeecCCCCEEEEEEeCCCc-EE
Q 001123 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL-------LD---SDDGFGEVLSWQAHRGPVLSLCISSYGD-LW 256 (1149)
Q Consensus 188 ~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~-------~~---~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~ 256 (1149)
.| .+++.|.+|++||.++||||.|-.||+.|++.-. ++ ....-..+++|-.|.+.|+.+.|.|-.. |+
T Consensus 110 ~H-K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILi 188 (430)
T KOG0640|consen 110 SH-KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILI 188 (430)
T ss_pred ec-ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEE
Confidence 45 7899999999999999999999999999986210 00 0112234678899999999999999877 78
Q ss_pred EEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecC-CceE
Q 001123 257 SGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFA 335 (1149)
Q Consensus 257 SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd-~tIr 335 (1149)
|||.|+|||++|......- +.+..+. ....++++.+-+.|..+..+.+ -++|
T Consensus 189 S~srD~tvKlFDfsK~saK----------------rA~K~~q-----------d~~~vrsiSfHPsGefllvgTdHp~~r 241 (430)
T KOG0640|consen 189 SGSRDNTVKLFDFSKTSAK----------------RAFKVFQ-----------DTEPVRSISFHPSGEFLLVGTDHPTLR 241 (430)
T ss_pred eccCCCeEEEEecccHHHH----------------HHHHHhh-----------ccceeeeEeecCCCceEEEecCCCcee
Confidence 9999999999998531100 0000000 1134677778888887777766 4799
Q ss_pred EEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec---
Q 001123 336 LWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--- 412 (1149)
Q Consensus 336 LWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~--- 412 (1149)
|+|++|-+|.-.-+++.+. ...+..+.++..++.-++++.||..++|+.
T Consensus 242 lYdv~T~QcfvsanPd~qh----------------------------t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~ 293 (430)
T KOG0640|consen 242 LYDVNTYQCFVSANPDDQH----------------------------TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN 293 (430)
T ss_pred EEeccceeEeeecCccccc----------------------------ccceeEEEecCCccEEEEeccCCcEEeeccccH
Confidence 9999998775443332221 122333444444555566666666666641
Q ss_pred ---ccccCCC--CceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCC--cc----EEEEE-ecCCEEEEee-c
Q 001123 413 ---GGFGDDN--RRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLP--FA----VQCLC-TFGSQIWVGY-M 477 (1149)
Q Consensus 413 ---g~~~~~~--~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~--~~----V~sls-~dG~~LaSGs-~ 477 (1149)
.++.... ..|.+..|..+|+ |+|.+.|.+|++|.+ +|+++++..|-. +. -.++- ....|++.-. .
T Consensus 294 rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEa 373 (430)
T KOG0640|consen 294 RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEA 373 (430)
T ss_pred HHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccc
Confidence 1222221 2455566666665 566666666666666 666666666521 00 00110 0123444333 2
Q ss_pred CcEEEEEeCC-Cceeeee-eccCCCeEEEE--ecCCeEEeecCCCceeeee
Q 001123 478 NGIVQVLDLE-GNLLGGW-VAHSSPVIKMA--VGAGYIFTLANHGGIRGWN 524 (1149)
Q Consensus 478 DGtIrlWD~~-G~~l~~l-~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWd 524 (1149)
.+.+.-||.. +..+..| .||++.|..+. |.+--++|+|.|..+|+|-
T Consensus 374 s~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 374 SNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred cCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 3456666633 3222222 27888888776 4556677888888888885
No 71
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2.1e-20 Score=194.75 Aligned_cols=231 Identities=15% Similarity=0.211 Sum_probs=172.8
Q ss_pred ceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeec
Q 001123 233 EVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILT 311 (1149)
Q Consensus 233 ~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~ 311 (1149)
....+.+|+++|.++.|.-||+ .++++.|+|||+|+...+....+..+++
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG----------------------------- 59 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHG----------------------------- 59 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCC-----------------------------
Confidence 4567889999999999999998 6899999999999987665444433322
Q ss_pred CCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeee
Q 001123 312 SDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFG 390 (1149)
Q Consensus 312 ~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~ 390 (1149)
.++..++.+.+..+++|++ |..+.+||+.||+.++.|.+|...++.+.|.-..
T Consensus 60 ~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees-------------------------- 113 (307)
T KOG0316|consen 60 HEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEES-------------------------- 113 (307)
T ss_pred ceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcc--------------------------
Confidence 3455556666677777654 6779999999999999999998776666554322
Q ss_pred eeccccceEeecCCcEEEEee-c-------ccccCCCCceEEEEEcCCCcEEEEeCCCeEEEEeC-CCCeeEeeecCCcc
Q 001123 391 FFQRSRNAIMGAADAVRRVAA-K-------GGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFA 461 (1149)
Q Consensus 391 f~~~~~~~i~G~~d~v~rv~~-~-------g~~~~~~~~V~ava~s~Dg~laSgs~DgtIrlWD~-tG~~l~tl~gH~~~ 461 (1149)
..+++|+.|...|+|+ + ..|......|.++..+. -.|++||.||++|.+|+ .|+......+| +
T Consensus 114 -----SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~-heIvaGS~DGtvRtydiR~G~l~sDy~g~--p 185 (307)
T KOG0316|consen 114 -----SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE-HEIVAGSVDGTVRTYDIRKGTLSSDYFGH--P 185 (307)
T ss_pred -----eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc-cEEEeeccCCcEEEEEeecceeehhhcCC--c
Confidence 2234444444444443 1 11222223344444432 24889999999999999 79887777776 7
Q ss_pred EEEEEe--cCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEEEE----ecCCeEEeecCCCceeeeecc
Q 001123 462 VQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA----VGAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 462 V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa----~Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
|+|+++ ||+.+.+|+.|++||+.|.+ |++++..+||...=+.+. -....++|||.||.|.+||+.
T Consensus 186 it~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 186 ITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLV 257 (307)
T ss_pred ceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEec
Confidence 777755 89999999999999999976 999999999998777664 356789999999999999985
No 72
>PTZ00420 coronin; Provisional
Probab=99.85 E-value=2e-19 Score=217.83 Aligned_cols=222 Identities=17% Similarity=0.148 Sum_probs=159.1
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCC-Cc-EEEEECCCcEEEEeCCCccee-eecCCCcce
Q 001123 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GD-LWSGSEGGGIKIWPWEAIEKA-LSLKPEERH 284 (1149)
Q Consensus 208 SGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpd-G~-L~SGS~DgTIRVWdl~t~~~~-~~l~~~~~~ 284 (1149)
+|+.++.|++|++.... .+..+.||.++|++++|+|+ +. |+|||.|++|||||+.++... ..+. ..
T Consensus 49 gGG~~gvI~L~~~~r~~--------~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~---~p 117 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKP--------PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK---DP 117 (568)
T ss_pred CCCceeEEEeeecCCCc--------eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc---cc
Confidence 37789999999986532 46788999999999999997 44 899999999999999753211 0000 00
Q ss_pred eeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCE-EEEe-cCCceEEEEcCCccEEEEEecCCceeeEEeecc
Q 001123 285 TAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAK-VWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSL 362 (1149)
Q Consensus 285 ~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~-v~Sa-sd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~ 362 (1149)
.. .+.+| ...|.++++.+++.. ++++ .|++|+|||+++++.+..+..
T Consensus 118 ~~---------~L~gH----------~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~------------ 166 (568)
T PTZ00420 118 QC---------ILKGH----------KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM------------ 166 (568)
T ss_pred eE---------EeecC----------CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec------------
Confidence 00 01223 256788888887764 4555 478999999998765433321
Q ss_pred CCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEeCCCe
Q 001123 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGL 441 (1149)
Q Consensus 363 ~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs~Dgt 441 (1149)
...|.+++++++|. +++++.|++
T Consensus 167 --------------------------------------------------------~~~V~SlswspdG~lLat~s~D~~ 190 (568)
T PTZ00420 167 --------------------------------------------------------PKKLSSLKWNIKGNLLSGTCVGKH 190 (568)
T ss_pred --------------------------------------------------------CCcEEEEEECCCCCEEEEEecCCE
Confidence 12355677899987 567888999
Q ss_pred EEEEeC-CCCeeEeeecCCccEEEE--E-----ecCCEEEEeecCc----EEEEEeCC--Cceeeeeec--cCCCeEEEE
Q 001123 442 LLQWDP-NGNRLQDFQYLPFAVQCL--C-----TFGSQIWVGYMNG----IVQVLDLE--GNLLGGWVA--HSSPVIKMA 505 (1149)
Q Consensus 442 IrlWD~-tG~~l~tl~gH~~~V~sl--s-----~dG~~LaSGs~DG----tIrlWD~~--G~~l~~l~g--H~~~V~sLa 505 (1149)
|+|||+ +|++++++.+|.+.+.+. . .++++|++++.|+ +|+|||+. ++++..+.. +.+.+....
T Consensus 191 IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~ 270 (568)
T PTZ00420 191 MHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHY 270 (568)
T ss_pred EEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEee
Confidence 999999 789999999998765432 2 4678999988774 89999976 566665443 333333332
Q ss_pred --ecCCeEEeecCCCceeeeeccC
Q 001123 506 --VGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 506 --~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
.+|.++++|+.|++||+|++..
T Consensus 271 D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 271 DESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred eCCCCCEEEEEECCCeEEEEEccC
Confidence 3588899999999999999853
No 73
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=7.6e-21 Score=220.13 Aligned_cols=277 Identities=18% Similarity=0.276 Sum_probs=199.6
Q ss_pred CeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceee--eecCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001123 143 EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKES--VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (1149)
Q Consensus 143 ~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s--~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWd 219 (1149)
+.||+ |.||.||+|++...+... +.|+..+ .| ..+|+.++.-.+|+.|+|+|.|.+|++|+
T Consensus 38 ryLfTgGRDg~i~~W~~~~d~~~~---------------s~~~~asme~H-sDWVNDiiL~~~~~tlIS~SsDtTVK~W~ 101 (735)
T KOG0308|consen 38 RYLFTGGRDGIIRLWSVTQDSNEP---------------STPYIASMEHH-SDWVNDIILCGNGKTLISASSDTTVKVWN 101 (735)
T ss_pred ceEEecCCCceEEEeccccccCCc---------------ccchhhhhhhh-HhHHhhHHhhcCCCceEEecCCceEEEee
Confidence 34887 569999999986544221 1122222 34 88999999999999999999999999999
Q ss_pred CCCCCCCCCCCccceEEeecCCCCEEEEEE-eCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccc
Q 001123 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCI-SSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (1149)
Q Consensus 220 l~~g~~~~~~~~~~~~~l~GH~~~VtsVaf-SpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l 297 (1149)
...+. -.+..++.-|++.|.|++. .++.. ++|||-|+.|.|||++++...+..+-.
T Consensus 102 ~~~~~------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n---------------- 159 (735)
T KOG0308|consen 102 AHKDN------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN---------------- 159 (735)
T ss_pred cccCc------chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc----------------
Confidence 87652 0235567889999999999 66665 589999999999999886431111100
Q ss_pred cccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeE
Q 001123 298 RSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKI 376 (1149)
Q Consensus 298 ~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~ 376 (1149)
..++......+...+-.++..+.+..+++|+ .+.+++||.+|++.+-.
T Consensus 160 --~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimk----------------------------- 208 (735)
T KOG0308|consen 160 --NVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK----------------------------- 208 (735)
T ss_pred --ccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceee-----------------------------
Confidence 0011111111234567788888777777766 46799999988653322
Q ss_pred EecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEe
Q 001123 377 VTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQD 454 (1149)
Q Consensus 377 ~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~t 454 (1149)
+.+|...|.++..++||+ ++|||+|||||+||+ ..+|+.+
T Consensus 209 --------------------------------------LrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T 250 (735)
T KOG0308|consen 209 --------------------------------------LRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLAT 250 (735)
T ss_pred --------------------------------------eeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeee
Confidence 335555667778899986 999999999999999 6799999
Q ss_pred eecCCccEEEEEe--cCCEEEEeecCcEEEEEeCCC-ceeeeeeccCCCeEEEEe--cCCeEEeecCCCceeeeecc
Q 001123 455 FQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEG-NLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 455 l~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~G-~~l~~l~gH~~~V~sLa~--Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
+..|...|+++.. +=+.+++|+.||.|..=|+.. ....-+.-...+|..+.. +.+-+..+..|+.|+-|.+.
T Consensus 251 ~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 251 YIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred EEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 9999999999965 458999999999999999763 211222233456777663 34455888899999999864
No 74
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=4.6e-20 Score=220.52 Aligned_cols=242 Identities=17% Similarity=0.170 Sum_probs=179.6
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCC------------------------------------CC------CC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL------------------------------------LD------SD 228 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~------------------------------------~~------~~ 228 (1149)
.++|.|+-||+||++||||+.||.||||.+.... .. ..
T Consensus 267 ~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~ 346 (712)
T KOG0283|consen 267 KGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSP 346 (712)
T ss_pred CCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCc
Confidence 7899999999999999999999999999976500 00 00
Q ss_pred C----------CccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeecccccc
Q 001123 229 D----------GFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLR 298 (1149)
Q Consensus 229 ~----------~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~ 298 (1149)
. .-++.+.|+||.+-|..|.||.++-|+|+|.|+|||||.+...+++..|
T Consensus 347 ~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F-------------------- 406 (712)
T KOG0283|consen 347 CVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF-------------------- 406 (712)
T ss_pred cccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE--------------------
Confidence 0 0012345789999999999999988999999999999999776554433
Q ss_pred ccccccceeeeecCCeEEEEEcCCCC-EEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeE
Q 001123 299 SHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKI 376 (1149)
Q Consensus 299 ~~~~~~g~~~~~~~dv~~las~~~~~-~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~ 376 (1149)
.+...|.|++|.+-+. ...||+ |+.+|||++...+.+.
T Consensus 407 ----------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~------------------------------ 446 (712)
T KOG0283|consen 407 ----------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD------------------------------ 446 (712)
T ss_pred ----------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEe------------------------------
Confidence 2346789999988555 455665 6789999985432110
Q ss_pred EecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeCCCCeeE-e
Q 001123 377 VTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQ-D 454 (1149)
Q Consensus 377 ~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~tG~~l~-t 454 (1149)
|... ..-|+++.+.|||+ .+.|+.+|.+++|+..|..++ .
T Consensus 447 W~Dl--------------------------------------~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 447 WNDL--------------------------------------RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred ehhh--------------------------------------hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe
Confidence 1111 12367888999998 679999999999999775443 2
Q ss_pred ee--cC------CccEEEEEec---CCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEEE----EecCCeEEeecCCC
Q 001123 455 FQ--YL------PFAVQCLCTF---GSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKM----AVGAGYIFTLANHG 518 (1149)
Q Consensus 455 l~--gH------~~~V~sls~d---G~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sL----a~Dg~~LaSgS~Dg 518 (1149)
+. -| ...|+.+-+. ...|++.++|..|||+|.. ..++..|+|+...=..+ ..||++|++||.|.
T Consensus 489 ~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs 568 (712)
T KOG0283|consen 489 FHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS 568 (712)
T ss_pred eeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCc
Confidence 21 11 1279888553 3578899999999999974 67888999876543322 25999999999999
Q ss_pred ceeeeeccCCCC
Q 001123 519 GIRGWNVTSPGP 530 (1149)
Q Consensus 519 tIRlWdl~sp~p 530 (1149)
.|.+|+...+..
T Consensus 569 ~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 569 WVYIWKNDSFNS 580 (712)
T ss_pred eEEEEeCCCCcc
Confidence 999999876544
No 75
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.4e-19 Score=195.55 Aligned_cols=233 Identities=23% Similarity=0.315 Sum_probs=176.3
Q ss_pred ceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCC---cEEEEEC
Q 001123 184 FKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG---DLWSGSE 260 (1149)
Q Consensus 184 ~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG---~L~SGS~ 260 (1149)
|..+-| .+++.|||+ +|.++||||.|-+|+++|+.... ++..+-.|.+.|+++.|.++- .|+||++
T Consensus 37 F~~~aH-~~sitavAV--s~~~~aSGssDetI~IYDm~k~~--------qlg~ll~HagsitaL~F~~~~S~shLlS~sd 105 (362)
T KOG0294|consen 37 FAFSAH-AGSITALAV--SGPYVASGSSDETIHIYDMRKRK--------QLGILLSHAGSITALKFYPPLSKSHLLSGSD 105 (362)
T ss_pred cccccc-ccceeEEEe--cceeEeccCCCCcEEEEeccchh--------hhcceeccccceEEEEecCCcchhheeeecC
Confidence 334455 899999999 67999999999999999998643 456677899999999999875 4999999
Q ss_pred CCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEc
Q 001123 261 GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDA 339 (1149)
Q Consensus 261 DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~ 339 (1149)
||.|-+|+...-+....+ ++|. +.|..++.-+++.+..+.+ |+.+|+||+
T Consensus 106 DG~i~iw~~~~W~~~~sl-------------------K~H~----------~~Vt~lsiHPS~KLALsVg~D~~lr~WNL 156 (362)
T KOG0294|consen 106 DGHIIIWRVGSWELLKSL-------------------KAHK----------GQVTDLSIHPSGKLALSVGGDQVLRTWNL 156 (362)
T ss_pred CCcEEEEEcCCeEEeeee-------------------cccc----------cccceeEecCCCceEEEEcCCceeeeehh
Confidence 999999998664433332 2232 5567777777777766754 678999999
Q ss_pred CCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCC
Q 001123 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (1149)
Q Consensus 340 ~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~ 419 (1149)
.+|+.-.+++....
T Consensus 157 V~Gr~a~v~~L~~~------------------------------------------------------------------ 170 (362)
T KOG0294|consen 157 VRGRVAFVLNLKNK------------------------------------------------------------------ 170 (362)
T ss_pred hcCccceeeccCCc------------------------------------------------------------------
Confidence 88764433321000
Q ss_pred CceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe-cCCEEEEeecCcEEEEEeCC-Cceeeeee
Q 001123 420 RRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (1149)
Q Consensus 420 ~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~-dG~~LaSGs~DGtIrlWD~~-G~~l~~l~ 495 (1149)
-..|.|+|.|. .+.++.+ .|-+|.+ +......+... ..+.|+.+ ++..|++|..|+.|++||.+ +.++..+.
T Consensus 171 --at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~ 246 (362)
T KOG0294|consen 171 --ATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFL 246 (362)
T ss_pred --ceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeeecCCceEEEecCCceEEEeccCCCccceeee
Confidence 01134666665 5555555 5889998 44554444432 45667766 68999999999999999987 88999999
Q ss_pred ccCCCeEEEE----ecCCeEEeecCCCceeeeecc
Q 001123 496 AHSSPVIKMA----VGAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 496 gH~~~V~sLa----~Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
||...|-+++ +++.+|+|+|.||.|++||+.
T Consensus 247 AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 247 AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred cchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 9999999998 367899999999999999975
No 76
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.84 E-value=1.7e-20 Score=196.58 Aligned_cols=239 Identities=16% Similarity=0.274 Sum_probs=187.7
Q ss_pred CccccccceeEEEEEeeCCeEEE-------------eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecC
Q 001123 125 PLRETQIGCFLRTIVCTEEQLWA-------------GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGV 191 (1149)
Q Consensus 125 pl~e~~~~~~l~~l~~~~~~l~a-------------g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~ 191 (1149)
-||.-++|-++-++.++.+.+|. +.|=+.||||.-+|..+.+ |. | .
T Consensus 42 mlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhs-----------------f~---h-k 100 (334)
T KOG0278|consen 42 MLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHS-----------------FE---H-K 100 (334)
T ss_pred hhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhh-----------------hh---h-h
Confidence 35567789999999999888886 2377899999988876654 21 2 4
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCC
Q 001123 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (1149)
Q Consensus 192 ~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~ 270 (1149)
.-|.+++|+.|...|.||+.+..+|++|++... .+...+.||.+.|..+.|....+ ++|++.|+|||+||..
T Consensus 101 hivk~~af~~ds~~lltgg~ekllrvfdln~p~-------App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~r 173 (334)
T KOG0278|consen 101 HIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK-------APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHR 173 (334)
T ss_pred heeeeEEecccchhhhccchHHHhhhhhccCCC-------CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEec
Confidence 478999999999999999999999999998644 33456789999999999987554 8899999999999998
Q ss_pred CcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEec
Q 001123 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNI 350 (1149)
Q Consensus 271 t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~~ 350 (1149)
++.....+. ....++.+-.++++..|..+...+|+.||+.+-++|+.+..
T Consensus 174 Tgt~v~sL~------------------------------~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~ 223 (334)
T KOG0278|consen 174 TGTEVQSLE------------------------------FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM 223 (334)
T ss_pred cCcEEEEEe------------------------------cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccC
Confidence 876443321 11345556667777777777778899999999888877654
Q ss_pred CCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCC
Q 001123 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID 430 (1149)
Q Consensus 351 ~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~D 430 (1149)
...+ ++...+|+
T Consensus 224 P~nV--------------------------------------------------------------------~SASL~P~ 235 (334)
T KOG0278|consen 224 PCNV--------------------------------------------------------------------ESASLHPK 235 (334)
T ss_pred cccc--------------------------------------------------------------------ccccccCC
Confidence 3322 12223444
Q ss_pred -CcEEEEeCCCeEEEEeC-CCCeeEee-ecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-Cc
Q 001123 431 -GMIWTGGANGLLLQWDP-NGNRLQDF-QYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GN 489 (1149)
Q Consensus 431 -g~laSgs~DgtIrlWD~-tG~~l~tl-~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~ 489 (1149)
+.++.|+.|..++.+|. +|+.+..+ .+|.++|.|+.+ +|..-|+||.||+||||... ++
T Consensus 236 k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 236 KEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred CceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 34788999999999999 89999886 899999999954 89999999999999999965 44
No 77
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.84 E-value=2.1e-20 Score=204.48 Aligned_cols=267 Identities=19% Similarity=0.301 Sum_probs=171.3
Q ss_pred CCCceeeeec-CCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEE
Q 001123 181 TAPFKESVKG-VSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSG 258 (1149)
Q Consensus 181 ~~~~~~s~~G-~~~V~~lafs~dg-~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SG 258 (1149)
+.||...+.| ...|.|||=+|.- ..+||||.||.||+||+.+.. +..+|++|.|.|..|+++. +.++|+
T Consensus 55 akPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~--------~~~~f~AH~G~V~Gi~v~~-~~~~tv 125 (433)
T KOG0268|consen 55 AKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE--------CIRTFKAHEGLVRGICVTQ-TSFFTV 125 (433)
T ss_pred hccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhh--------hhheeecccCceeeEEecc-cceEEe
Confidence 4567666667 8999999999976 889999999999999998854 4788999999999999998 558999
Q ss_pred ECCCcEEEEeCCCcceeeecCCCcc-----eee---EEEeeeccccccccccccceeee-ecC-CeEEEEEcCCCC-EEE
Q 001123 259 SEGGGIKIWPWEAIEKALSLKPEER-----HTA---ALIVERSYIDLRSHLSVNGFSSI-LTS-DIKNLLSDHSRA-KVW 327 (1149)
Q Consensus 259 S~DgTIRVWdl~t~~~~~~l~~~~~-----~~~---a~~~~~~~~~l~~~~~~~g~~~~-~~~-dv~~las~~~~~-~v~ 327 (1149)
|+|+|||.|.++.. +..++..... |.. .++.-+.-++++.......++.. +.. .+.++.+++... .|+
T Consensus 126 gdDKtvK~wk~~~~-p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 126 GDDKTVKQWKIDGP-PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILA 204 (433)
T ss_pred cCCcceeeeeccCC-cceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchhee
Confidence 99999999997542 1111111000 000 00000000000000000000000 000 122222322211 222
Q ss_pred Ee-cCCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcE
Q 001123 328 SA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAV 406 (1149)
Q Consensus 328 Sa-sd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v 406 (1149)
++ +|++|.|+|++++..++.+.
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi--------------------------------------------------------- 227 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVI--------------------------------------------------------- 227 (433)
T ss_pred eeccCCceEEEecccCCccceee---------------------------------------------------------
Confidence 22 34444444444443333221
Q ss_pred EEEeecccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-C-CCeeEeeecCCccEEEEEe--cCCEEEEeecCcEE
Q 001123 407 RRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-N-GNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIV 481 (1149)
Q Consensus 407 ~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-t-G~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtI 481 (1149)
-..+.+.+.++|.+. +.+|++|..+..+|+ . -..++...+|.++|.++.+ .|+-+++||.|.+|
T Consensus 228 -----------~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksI 296 (433)
T KOG0268|consen 228 -----------LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSI 296 (433)
T ss_pred -----------eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceE
Confidence 112345667888766 679999999999999 3 5789999999999999965 59999999999999
Q ss_pred EEEeCC-CceeeeeeccC---CCeEEEE--ecCCeEEeecCCCceeeeeccC
Q 001123 482 QVLDLE-GNLLGGWVAHS---SPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 482 rlWD~~-G~~l~~l~gH~---~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
||+.+. |.-... -|+ ..|.+|. .|.+|++|||.|+.||+|....
T Consensus 297 RIf~~~~~~SRdi--YhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 297 RIFPVNHGHSRDI--YHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred EEeecCCCcchhh--hhHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 999976 432111 122 2467776 5999999999999999998743
No 78
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.84 E-value=3.9e-19 Score=199.99 Aligned_cols=239 Identities=19% Similarity=0.267 Sum_probs=177.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCC------------CCCCccceEEeecCCCCEEEEEEeCCCc-EEE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLD------------SDDGFGEVLSWQAHRGPVLSLCISSYGD-LWS 257 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~------------~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~S 257 (1149)
..+|+||++++|+++++|++.||+|--|++.+|.-. ...++++. .++|..-|.+++.|+||+ |+|
T Consensus 142 ~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~--r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 142 QLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKES--RKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred cCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcc--cccccceeEEEEEcCCCcEEEe
Confidence 679999999999999999999999999999887721 01122211 259999999999999998 899
Q ss_pred EECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEE
Q 001123 258 GSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFAL 336 (1149)
Q Consensus 258 GS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrL 336 (1149)
|+.|..|.||+.++.+....++.+ . +.|..+++-.+...++|++ |.++++
T Consensus 220 gg~d~~v~Iw~~~t~ehv~~~~gh-------------------r----------~~V~~L~fr~gt~~lys~s~Drsvkv 270 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTLEHVKVFKGH-------------------R----------GAVSSLAFRKGTSELYSASADRSVKV 270 (479)
T ss_pred cCCCceEEEecCcccchhhccccc-------------------c----------cceeeeeeecCccceeeeecCCceEE
Confidence 999999999999987755443322 1 4566777766666666654 789999
Q ss_pred EEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeeccccc
Q 001123 337 WDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFG 416 (1149)
Q Consensus 337 WD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~ 416 (1149)
|++..-..+.+| -
T Consensus 271 w~~~~~s~vetl-------------------------------------------------------------------y 283 (479)
T KOG0299|consen 271 WSIDQLSYVETL-------------------------------------------------------------------Y 283 (479)
T ss_pred EehhHhHHHHHH-------------------------------------------------------------------h
Confidence 998643333222 2
Q ss_pred CCCCceEEEEEcCCCcEEE-EeCCCeEEEEeCCCCeeEeeecCCccEEEEEe-cCCEEEEeecCcEEEEEeCC-Cceeee
Q 001123 417 DDNRRTEALTTSIDGMIWT-GGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGG 493 (1149)
Q Consensus 417 ~~~~~V~ava~s~Dg~laS-gs~DgtIrlWD~tG~~l~tl~gH~~~V~sls~-dG~~LaSGs~DGtIrlWD~~-G~~l~~ 493 (1149)
+|...|..+....-+++++ |+.|+|+++|++.-+..-.+.+|.+.+-|+++ +...+++||.+|.|.||++. -+++.+
T Consensus 284 GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~ 363 (479)
T KOG0299|consen 284 GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFT 363 (479)
T ss_pred CCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeE
Confidence 2222233333333445554 55899999999955555677899999999987 78999999999999999964 444332
Q ss_pred ee-cc-----------CCCeEEEE--ecCCeEEeecCCCceeeeeccC
Q 001123 494 WV-AH-----------SSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 494 l~-gH-----------~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
.. +| ..||++|+ +...+++|||.+|.||+|.+..
T Consensus 364 ~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 364 SRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED 411 (479)
T ss_pred eeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecC
Confidence 22 22 34899998 5778999999999999999864
No 79
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.7e-19 Score=190.02 Aligned_cols=264 Identities=17% Similarity=0.217 Sum_probs=186.2
Q ss_pred EeeCCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCC-CCEEEEEeCCCeEE
Q 001123 139 VCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIM 216 (1149)
Q Consensus 139 ~~~~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~d-g~~LaSGS~DGtIR 216 (1149)
++...|.+. ++.|.+.+-++..+..+.. + .+..=...+..+++++. ...+++++-||++|
T Consensus 25 avAt~q~yGl~G~G~L~ile~~~~~gi~e-----------------~-~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLr 86 (311)
T KOG0277|consen 25 AVATAQHYGLAGNGRLFILEVTDPKGIQE-----------------C-QSYDTEDGLFDVAWSENHENQVIAASGDGSLR 86 (311)
T ss_pred heeehhhcccccCceEEEEecCCCCCeEE-----------------E-EeeecccceeEeeecCCCcceEEEEecCceEE
Confidence 444555554 5577888888753332221 0 01110567888999987 47889999999999
Q ss_pred EEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc--EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeecc
Q 001123 217 CWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSY 294 (1149)
Q Consensus 217 vWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~--L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~ 294 (1149)
+||+.-.. .++..|+.|...|.++-+++-.+ ++++|.|+|||||+........++.++...
T Consensus 87 l~d~~~~s-------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~---------- 149 (311)
T KOG0277|consen 87 LFDLTMPS-------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSC---------- 149 (311)
T ss_pred EeccCCCC-------cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccE----------
Confidence 99954322 46788999999999999988543 678899999999998765544444433222
Q ss_pred ccccccccccceeeeecCCeEEEEEc-CCCCEEEEe-cCCceEEEEcCC-ccEEEEEecCCceeeEEeeccCCCcccccc
Q 001123 295 IDLRSHLSVNGFSSILTSDIKNLLSD-HSRAKVWSA-GFLSFALWDART-RELLKVFNIDGQIENRVDMSLLPDFAMEDE 371 (1149)
Q Consensus 295 ~~l~~~~~~~g~~~~~~~dv~~las~-~~~~~v~Sa-sd~tIrLWD~~T-G~~L~~l~~~g~~~~~v~~S~~~~~~~~~~ 371 (1149)
+...+++ +....++|+ +|+++++||++. |+.+. +..|.
T Consensus 150 -------------------Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~------------------- 190 (311)
T KOG0277|consen 150 -------------------IYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHN------------------- 190 (311)
T ss_pred -------------------EEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEecc-------------------
Confidence 2222233 234455555 467899999864 22221 21111
Q ss_pred ceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcC--CCcEEEEeCCCeEEEEeC-C
Q 001123 372 FKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI--DGMIWTGGANGLLLQWDP-N 448 (1149)
Q Consensus 372 ~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~--Dg~laSgs~DgtIrlWD~-t 448 (1149)
..+.+.-++. +..+++|+.|+.||.||+ +
T Consensus 191 ------------------------------------------------~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~ 222 (311)
T KOG0277|consen 191 ------------------------------------------------SEILCCDWSKYNHNVLATGGVDNLVRGWDIRN 222 (311)
T ss_pred ------------------------------------------------ceeEeecccccCCcEEEecCCCceEEEEehhh
Confidence 1122222222 234789999999999999 3
Q ss_pred -CCeeEeeecCCccEEEEEec---CCEEEEeecCcEEEEEeCC-C-ceeeeeeccCCCeEEEE---ecCCeEEeecCCCc
Q 001123 449 -GNRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE-G-NLLGGWVAHSSPVIKMA---VGAGYIFTLANHGG 519 (1149)
Q Consensus 449 -G~~l~tl~gH~~~V~sls~d---G~~LaSGs~DGtIrlWD~~-G-~~l~~l~gH~~~V~sLa---~Dg~~LaSgS~Dgt 519 (1149)
...+..|.+|..+|..+.++ -..|||++.|=|+|+||.+ + .++.+..-|+.-|..+. .++.++|+.+.|+.
T Consensus 223 ~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~ 302 (311)
T KOG0277|consen 223 LRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDEL 302 (311)
T ss_pred ccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccc
Confidence 47789999999999999765 4799999999999999976 3 46777778999998886 48999999999999
Q ss_pred eeeee
Q 001123 520 IRGWN 524 (1149)
Q Consensus 520 IRlWd 524 (1149)
++||+
T Consensus 303 l~Vw~ 307 (311)
T KOG0277|consen 303 LYVWN 307 (311)
T ss_pred eeeec
Confidence 99998
No 80
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=7.7e-19 Score=197.58 Aligned_cols=268 Identities=20% Similarity=0.312 Sum_probs=182.0
Q ss_pred EeeCCeEEE-eCCCCEEEEeCCCCCCCCc-cccccccCCCCCCCCCCceee--eecCCceEEEEEcCCCCEEEEEeCCCe
Q 001123 139 VCTEEQLWA-GGENGLRVWNLKELYDESE-SDSVSVSKSKGEDGTAPFKES--VKGVSSVMCMVGDEASGVVWSGHRDGR 214 (1149)
Q Consensus 139 ~~~~~~l~a-g~D~tVrvWd~~~g~~~~~-~~~~~~~~~~~d~~~~~~~~s--~~G~~~V~~lafs~dg~~LaSGS~DGt 214 (1149)
...++..|. +.|++|-=|++.+++...- ....-+..+.+ .|+.++ .| ...++|+|+|+||++||||+.|..
T Consensus 151 s~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~----~~~k~~r~~h-~keil~~avS~Dgkylatgg~d~~ 225 (479)
T KOG0299|consen 151 SPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHG----NPLKESRKGH-VKEILTLAVSSDGKYLATGGRDRH 225 (479)
T ss_pred eccccceeecCCCcceeeeehhcCcccccccccchhhhhcc----CCCCcccccc-cceeEEEEEcCCCcEEEecCCCce
Confidence 444678886 5699999999999885421 00000000011 111111 34 678999999999999999999999
Q ss_pred EEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCC-cEEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeec
Q 001123 215 IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (1149)
Q Consensus 215 IRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG-~L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~ 293 (1149)
|.||+..+.. ++..|.||+++|.+++|-..- +|+|+|.|++||+|+++.....-++.
T Consensus 226 v~Iw~~~t~e--------hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly-------------- 283 (479)
T KOG0299|consen 226 VQIWDCDTLE--------HVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY-------------- 283 (479)
T ss_pred EEEecCcccc--------hhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh--------------
Confidence 9999998853 577899999999999998643 49999999999999996533222221
Q ss_pred cccccccccccceeeeecCCeEEEEEcCCCCEEEEec--CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCcccccc
Q 001123 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDE 371 (1149)
Q Consensus 294 ~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas--d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~ 371 (1149)
+|. +.|..+-. -+..++++++ |.|++||++..- .+.
T Consensus 284 -----GHq----------d~v~~Ida-L~reR~vtVGgrDrT~rlwKi~ee---------sql----------------- 321 (479)
T KOG0299|consen 284 -----GHQ----------DGVLGIDA-LSRERCVTVGGRDRTVRLWKIPEE---------SQL----------------- 321 (479)
T ss_pred -----CCc----------cceeeech-hcccceEEeccccceeEEEecccc---------cee-----------------
Confidence 221 11111111 2234555554 789999997310 000
Q ss_pred ceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCcEEEEeCCCeEEEEeC-CCC
Q 001123 372 FKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGN 450 (1149)
Q Consensus 372 ~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~laSgs~DgtIrlWD~-tG~ 450 (1149)
.|.++...+.|+++-.+..+++||.||.|.||++ +-+
T Consensus 322 ------------------------------------------ifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKk 359 (479)
T KOG0299|consen 322 ------------------------------------------IFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKK 359 (479)
T ss_pred ------------------------------------------eeeCCCCCeeeEEEecccceeeccCCceEEEeeecccC
Confidence 0334455677888888888999999999999999 556
Q ss_pred eeEeee-c-----------CCccEEEEEec--CCEEEEeecCcEEEEEeCC-C----ceeeeeeccCCCeEEEE--ecCC
Q 001123 451 RLQDFQ-Y-----------LPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE-G----NLLGGWVAHSSPVIKMA--VGAG 509 (1149)
Q Consensus 451 ~l~tl~-g-----------H~~~V~sls~d--G~~LaSGs~DGtIrlWD~~-G----~~l~~l~gH~~~V~sLa--~Dg~ 509 (1149)
.+.+.. . ++.+|++|+.- ...+|+||.+|.||||-++ | +++..+. -.+.|++|+ .+|+
T Consensus 360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk 438 (479)
T KOG0299|consen 360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGK 438 (479)
T ss_pred ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCC
Confidence 554432 1 23388999763 4799999999999999986 5 3455555 567899998 4888
Q ss_pred eEEee-cCCC
Q 001123 510 YIFTL-ANHG 518 (1149)
Q Consensus 510 ~LaSg-S~Dg 518 (1149)
.|+.| +...
T Consensus 439 ~ivagiGkEh 448 (479)
T KOG0299|consen 439 RIVAGIGKEH 448 (479)
T ss_pred EEEEeccccc
Confidence 66554 4433
No 81
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.83 E-value=2.8e-20 Score=199.96 Aligned_cols=273 Identities=19% Similarity=0.233 Sum_probs=188.8
Q ss_pred eCCeEEEeC-CCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001123 141 TEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (1149)
Q Consensus 141 ~~~~l~ag~-D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWd 219 (1149)
++..|.+|+ ||-|-|||.-+|+..+-+ -......| ..+ ..+|+|+.||.|..+||||+.||+||+|.
T Consensus 224 DgqyLvsgSvDGFiEVWny~~GKlrKDL---------kYQAqd~f--MMm-d~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 224 DGQYLVSGSVDGFIEVWNYTTGKLRKDL---------KYQAQDNF--MMM-DDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred CCceEeeccccceeeeehhccchhhhhh---------hhhhhcce--eec-ccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 355566665 999999999888754320 00001112 233 68999999999999999999999999999
Q ss_pred CCCCCCCCCCCccceEEee-cCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccc
Q 001123 220 MNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (1149)
Q Consensus 220 l~~g~~~~~~~~~~~~~l~-GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l 297 (1149)
+.+|.| +..|. +|+..|+|+.||.|+. ++|+|.|.|||+--+.+|+++..+.
T Consensus 292 i~tG~C--------lRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr------------------ 345 (508)
T KOG0275|consen 292 IETGQC--------LRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR------------------ 345 (508)
T ss_pred EecchH--------HHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc------------------
Confidence 999986 55664 9999999999999985 9999999999999998877654433
Q ss_pred cccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCc--eeeEEeecc-CCCccccccce
Q 001123 298 RSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQ--IENRVDMSL-LPDFAMEDEFK 373 (1149)
Q Consensus 298 ~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~--~~~~v~~S~-~~~~~~~~~~~ 373 (1149)
+|. +.++-..+.++|..+.+++ |++|++|+.+|++|+.+|++-+. .++++..-| ++...+
T Consensus 346 -GHs----------Syvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~i----- 409 (508)
T KOG0275|consen 346 -GHS----------SYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFI----- 409 (508)
T ss_pred -Ccc----------ccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEE-----
Confidence 333 4455566778888888765 78999999999999999986442 222222222 111111
Q ss_pred eeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCe
Q 001123 374 TKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNR 451 (1149)
Q Consensus 374 ~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~ 451 (1149)
.+.......++.-.+-+.|.-..|. .+....|.| ..||.|. ++..++|+.+..+.+ .|+.
T Consensus 410 ----------------VCNrsntv~imn~qGQvVrsfsSGk-REgGdFi~~-~lSpkGewiYcigED~vlYCF~~~sG~L 471 (508)
T KOG0275|consen 410 ----------------VCNRSNTVYIMNMQGQVVRSFSSGK-REGGDFINA-ILSPKGEWIYCIGEDGVLYCFSVLSGKL 471 (508)
T ss_pred ----------------EEcCCCeEEEEeccceEEeeeccCC-ccCCceEEE-EecCCCcEEEEEccCcEEEEEEeecCce
Confidence 1111111112222222222211111 111223434 4677776 678899999999999 8999
Q ss_pred eEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEe
Q 001123 452 LQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (1149)
Q Consensus 452 l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD 485 (1149)
-+++.-|...|-.++. ..+.||+=+.||.+++|.
T Consensus 472 E~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 472 ERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999888888864 568999999999999994
No 82
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=5.1e-18 Score=175.48 Aligned_cols=299 Identities=18% Similarity=0.239 Sum_probs=207.8
Q ss_pred ccccccceeEEEEEee-CCeEEE-e-CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCC
Q 001123 126 LRETQIGCFLRTIVCT-EEQLWA-G-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA 202 (1149)
Q Consensus 126 l~e~~~~~~l~~l~~~-~~~l~a-g-~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~d 202 (1149)
|.++| .+|.++.+ .+.|+| | ..+|+|+-.-.....++. +- ...-..+...+....|-.++|+|.+|||+
T Consensus 29 l~dsq---airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~----~h-ea~~~pp~v~~kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 29 LEDSQ---AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRH----AH-EAAKQPPSVLCKRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred ecchh---heeeEEecCCCceEEeccCCceEEEEccccccCccc----cc-ccccCCCeEEeeeccccCccEEEEEecCc
Confidence 34455 78888888 788887 4 467899966443322221 00 00000001112222222789999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCC----Cc-EEEEE-CCCcEEEEeCCCcceee
Q 001123 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY----GD-LWSGS-EGGGIKIWPWEAIEKAL 276 (1149)
Q Consensus 203 g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpd----G~-L~SGS-~DgTIRVWdl~t~~~~~ 276 (1149)
|++||+||.|.+||+-..+...| +....-..|.-|.+.|..++|-.+ |. |+||+ .|..|.+=|..+++...
T Consensus 101 geliatgsndk~ik~l~fn~dt~---~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~ 177 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTC---NATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFH 177 (350)
T ss_pred cCeEEecCCCceEEEEecccccc---cccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcce
Confidence 99999999999999988776554 223334567779999999999654 23 67755 57778888887777666
Q ss_pred ecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCcee
Q 001123 277 SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIE 355 (1149)
Q Consensus 277 ~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~ 355 (1149)
.++++..|+.++ - +=++..++|++ |.|||.||++-..+++++..+-+
T Consensus 178 a~sghtghilal-----------------------------y-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~-- 225 (350)
T KOG0641|consen 178 ALSGHTGHILAL-----------------------------Y-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH-- 225 (350)
T ss_pred eecCCcccEEEE-----------------------------E-EecCcEEEccCCCceEEEEeeeccceeeeccCccc--
Confidence 666655554433 1 12345566655 68999999987777666532110
Q ss_pred eEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EE
Q 001123 356 NRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IW 434 (1149)
Q Consensus 356 ~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-la 434 (1149)
+. | -....|.+|+..|.|+ ++
T Consensus 226 ---------------------------~~--------------------g-----------lessavaav~vdpsgrll~ 247 (350)
T KOG0641|consen 226 ---------------------------DG--------------------G-----------LESSAVAAVAVDPSGRLLA 247 (350)
T ss_pred ---------------------------CC--------------------C-----------cccceeEEEEECCCcceee
Confidence 00 0 0123466788899998 67
Q ss_pred EEeCCCeEEEEeCC-CCeeEeeecCCccEEEEEec--CCEEEEeecCcEEEEEeCCCce-----eeeeeccCCCeEEEEe
Q 001123 435 TGGANGLLLQWDPN-GNRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLEGNL-----LGGWVAHSSPVIKMAV 506 (1149)
Q Consensus 435 Sgs~DgtIrlWD~t-G~~l~tl~gH~~~V~sls~d--G~~LaSGs~DGtIrlWD~~G~~-----l~~l~gH~~~V~sLa~ 506 (1149)
+|..|....+||+. |+.+|.+..|+..|.|+.+. .-||.+++.|-.|++=|+.|.+ +...-.|.+.+..+.+
T Consensus 248 sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rw 327 (350)
T KOG0641|consen 248 SGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRW 327 (350)
T ss_pred eccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEe
Confidence 99999999999995 68899999999999999775 4699999999999999998754 3344468888887775
Q ss_pred cC--CeEEeecCCCceeeeec
Q 001123 507 GA--GYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 507 Dg--~~LaSgS~DgtIRlWdl 525 (1149)
.. -.++|.|.|.|+.+|-+
T Consensus 328 h~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 328 HPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred cCccceeeeccCcceEEEecc
Confidence 33 35778899999999975
No 83
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=1.4e-18 Score=187.79 Aligned_cols=238 Identities=16% Similarity=0.228 Sum_probs=172.9
Q ss_pred CCccccc-cceeEEEEEeeCCeEEEe-CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcC
Q 001123 124 HPLRETQ-IGCFLRTIVCTEEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE 201 (1149)
Q Consensus 124 ~pl~e~~-~~~~l~~l~~~~~~l~ag-~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~ 201 (1149)
.|++--+ +-..+.+||+....+.+| .|.+|+++|+......+. + ..| .+.|+||.|.+
T Consensus 34 ~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~-----------------l--l~H-agsitaL~F~~ 93 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGI-----------------L--LSH-AGSITALKFYP 93 (362)
T ss_pred eccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcc-----------------e--ecc-ccceEEEEecC
Confidence 4566533 455788999998888875 599999999987766654 1 134 78999999999
Q ss_pred CCC--EEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcE-EEEECCCcEEEEeCCCcceeeec
Q 001123 202 ASG--VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWPWEAIEKALSL 278 (1149)
Q Consensus 202 dg~--~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L-~SGS~DgTIRVWdl~t~~~~~~l 278 (1149)
.-. .|.||+.||.|.+|++..- .++.++++|++.|+.|+++|.|+| +|.+.|+++|+||+-.|.....+
T Consensus 94 ~~S~shLlS~sdDG~i~iw~~~~W--------~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~ 165 (362)
T KOG0294|consen 94 PLSKSHLLSGSDDGHIIIWRVGSW--------ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL 165 (362)
T ss_pred CcchhheeeecCCCcEEEEEcCCe--------EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceee
Confidence 865 8999999999999998764 458889999999999999999998 59999999999999765433221
Q ss_pred CCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEecCCceeeEE
Q 001123 279 KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRV 358 (1149)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~~~g~~~~~v 358 (1149)
. ++ ..-..+.+++.|...+-...+.|-+|-+.+-.+.+
T Consensus 166 ~-----------------L~-------------~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~------------ 203 (362)
T KOG0294|consen 166 N-----------------LK-------------NKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFR------------ 203 (362)
T ss_pred c-----------------cC-------------CcceeeEEcCCCCEEEEEeccEEEEEecccHhHhh------------
Confidence 1 00 00111233344443333333334444433211110
Q ss_pred eeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCcEEEEeC
Q 001123 359 DMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGA 438 (1149)
Q Consensus 359 ~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~laSgs~ 438 (1149)
......++-++.+-..+.+++|..
T Consensus 204 --------------------------------------------------------~i~~~~r~l~~~~l~~~~L~vG~d 227 (362)
T KOG0294|consen 204 --------------------------------------------------------EIENPKRILCATFLDGSELLVGGD 227 (362)
T ss_pred --------------------------------------------------------hhhccccceeeeecCCceEEEecC
Confidence 011123344556667778999999
Q ss_pred CCeEEEEeC-CCCeeEeeecCCccEEEEEe----cCCEEEEeecCcEEEEEeCC
Q 001123 439 NGLLLQWDP-NGNRLQDFQYLPFAVQCLCT----FGSQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 439 DgtIrlWD~-tG~~l~tl~gH~~~V~sls~----dG~~LaSGs~DGtIrlWD~~ 487 (1149)
|+.|++||. .+.++..+.+|..+|.++.+ ++.+|+++|+||.|+|||++
T Consensus 228 ~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 228 NEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred CceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 999999999 58999999999999999964 46899999999999999976
No 84
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=6.1e-19 Score=199.73 Aligned_cols=226 Identities=19% Similarity=0.251 Sum_probs=173.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc--EEEEECCCcEEEEe
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWP 268 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~--L~SGS~DgTIRVWd 268 (1149)
...|.++.|-.||++||.|...|.|+++|+.+. .-++.+.+|+.+|..+.|+|++. |+|||.|+++|+||
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r--------~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d 139 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR--------VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWD 139 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccH--------HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEE
Confidence 467899999999999999999999999996552 23567899999999999999875 68999999999999
Q ss_pred CCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCC-EEEEec-CCceEEEEcCCc-cEE
Q 001123 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTR-ELL 345 (1149)
Q Consensus 269 l~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~-~v~Sas-d~tIrLWD~~TG-~~L 345 (1149)
+.+......+. +|. ..|+|.++.+... .+++++ |++||+||+++- ..+
T Consensus 140 ~s~a~v~~~l~-------------------~ht----------DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v 190 (487)
T KOG0310|consen 140 LSTAYVQAELS-------------------GHT----------DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRV 190 (487)
T ss_pred cCCcEEEEEec-------------------CCc----------ceeEeeccccCCCeEEEecCCCceEEEEEeccCCcee
Confidence 98754322222 232 5566766665444 677877 678999998753 111
Q ss_pred EEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEE
Q 001123 346 KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEAL 425 (1149)
Q Consensus 346 ~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~av 425 (1149)
..| .|..+|+.|
T Consensus 191 ~el--------------------------------------------------------------------nhg~pVe~v 202 (487)
T KOG0310|consen 191 VEL--------------------------------------------------------------------NHGCPVESV 202 (487)
T ss_pred EEe--------------------------------------------------------------------cCCCceeeE
Confidence 111 344567777
Q ss_pred EEcCCCc-EEEEeCCCeEEEEeC-CC-CeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-CceeeeeeccCC
Q 001123 426 TTSIDGM-IWTGGANGLLLQWDP-NG-NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSS 499 (1149)
Q Consensus 426 a~s~Dg~-laSgs~DgtIrlWD~-tG-~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~ 499 (1149)
.+-|.|. |++++. ..||+||+ +| +.+..+..|...|+|+.. ++++|+||+-||.++++|++ -+.+..|. -.+
T Consensus 203 l~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~ 280 (487)
T KOG0310|consen 203 LALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPG 280 (487)
T ss_pred EEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-ccc
Confidence 7777765 566554 57999999 46 555556669999999976 67999999999999999965 57788875 478
Q ss_pred CeEEEE--ecCCeEEeecCCCceeee
Q 001123 500 PVIKMA--VGAGYIFTLANHGGIRGW 523 (1149)
Q Consensus 500 ~V~sLa--~Dg~~LaSgS~DgtIRlW 523 (1149)
+|.+++ +|++.++-|-.||.+-+=
T Consensus 281 pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 281 PVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ceeeEEecCCCceEEEecccceeeee
Confidence 999887 688999999999977543
No 85
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.82 E-value=3.7e-19 Score=201.12 Aligned_cols=257 Identities=13% Similarity=0.132 Sum_probs=174.8
Q ss_pred eCCCCEEEEeCCC-CCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCC
Q 001123 148 GGENGLRVWNLKE-LYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLD 226 (1149)
Q Consensus 148 g~D~tVrvWd~~~-g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~ 226 (1149)
|-|+.|+|||+-+ +.++++ | ..| ..+|..+.|+++|..+.|+|.|+.||+||+++|+|
T Consensus 234 gmD~~vklW~vy~~~~~lrt-----------------f--~gH-~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~- 292 (503)
T KOG0282|consen 234 GMDGLVKLWNVYDDRRCLRT-----------------F--KGH-RKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQV- 292 (503)
T ss_pred CCCceEEEEEEecCcceehh-----------------h--hcc-hhhhhhhhccccCCeeeeeecceeeeeeccccceE-
Confidence 4599999999876 555554 2 234 88999999999999999999999999999999974
Q ss_pred CCCCccceEEeecCC-CCEEEEEEeCCCc--EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccc
Q 001123 227 SDDGFGEVLSWQAHR-GPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSV 303 (1149)
Q Consensus 227 ~~~~~~~~~~l~GH~-~~VtsVafSpdG~--L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~ 303 (1149)
..+ .|. ..+++|.|.||+. +++|+.|+.|+.||+.+++-... ..+|+
T Consensus 293 -------~~~--f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe---Yd~hL------------------ 342 (503)
T KOG0282|consen 293 -------LSR--FHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE---YDRHL------------------ 342 (503)
T ss_pred -------EEE--EecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH---HHhhh------------------
Confidence 343 354 4688999999994 68999999999999988762211 11221
Q ss_pred cceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCc-eeeEEeeccCCCccccccceeeEEecCC
Q 001123 304 NGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQ-IENRVDMSLLPDFAMEDEFKTKIVTSSK 381 (1149)
Q Consensus 304 ~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~-~~~~v~~S~~~~~~~~~~~~~~~~s~~~ 381 (1149)
+.+..+.+-+.+.+.++++ +.++++|+.+.+-.++-..-..+ ...++...|.....+.+.+...
T Consensus 343 --------g~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~------ 408 (503)
T KOG0282|consen 343 --------GAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNY------ 408 (503)
T ss_pred --------hheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCce------
Confidence 2334445556666766665 46899999988766553221111 1112333333332222111101
Q ss_pred CCccceeeeeeccccceEeecCCcEEEEeecccccCCCC--ceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeec
Q 001123 382 KDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR--RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQY 457 (1149)
Q Consensus 382 k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~--~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~g 457 (1149)
++.-+...-.+......|.+|.. .-..|.|||||. |++|+.||.+.+||- +-+.+..+.+
T Consensus 409 ----------------i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka 472 (503)
T KOG0282|consen 409 ----------------IAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA 472 (503)
T ss_pred ----------------EEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc
Confidence 11111111111222234556533 344577999986 889999999999999 6789999999
Q ss_pred CCccEEEEEec---CCEEEEeecCcEEEEEe
Q 001123 458 LPFAVQCLCTF---GSQIWVGYMNGIVQVLD 485 (1149)
Q Consensus 458 H~~~V~sls~d---G~~LaSGs~DGtIrlWD 485 (1149)
|..++..+.+- -..+|+++-||.|++||
T Consensus 473 h~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 473 HDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99998888763 47999999999999997
No 86
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.81 E-value=7e-18 Score=178.89 Aligned_cols=273 Identities=16% Similarity=0.131 Sum_probs=192.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
..|++-+.++.+|.+|+|+++|.++-||-...|. .+-++.||+++|+|+.++-+.+ |+|||.|.++||||+
T Consensus 10 ERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe--------rlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 10 ERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE--------RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccceEEecCCCcEEEEecCCCCceEEEecCCc--------eeeeecCCCceEEEEEecCCcceeeeccccceeEEEEc
Confidence 8899999999999999999999999999875554 3678999999999999998887 899999999999999
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecC------CceEEEEcCCcc
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF------LSFALWDARTRE 343 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd------~tIrLWD~~TG~ 343 (1149)
++|+....+.. ...|+.+-++.++.++..+.| ..|.+.|++...
T Consensus 82 ~tGk~la~~k~------------------------------~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~ 131 (327)
T KOG0643|consen 82 ETGKQLATWKT------------------------------NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDS 131 (327)
T ss_pred CCCcEEEEeec------------------------------CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence 99876544321 133455556666655544433 347777776321
Q ss_pred EEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecc-------ccc
Q 001123 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG-------GFG 416 (1149)
Q Consensus 344 ~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g-------~~~ 416 (1149)
. ...++++-.++.... .......+.+-+..+++|+.+|-.+.++.. .-.
T Consensus 132 ~---------------------~~~s~ep~~kI~t~~---skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~ 187 (327)
T KOG0643|consen 132 S---------------------DIDSEEPYLKIPTPD---SKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDE 187 (327)
T ss_pred h---------------------hhcccCceEEecCCc---cceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechh
Confidence 0 001111111111111 111222344456678899999877776522 224
Q ss_pred CCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeC---CCc
Q 001123 417 DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDL---EGN 489 (1149)
Q Consensus 417 ~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~---~G~ 489 (1149)
.|...|+.+.+++|.. .++||.|.+-++||. +=++++++.. ..+|++.+. .-..++.|+--.-.-|=-. .|+
T Consensus 188 ~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GK 266 (327)
T KOG0643|consen 188 EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGK 266 (327)
T ss_pred hhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-cccccceecccccceEEecCCceeeeeeeecccccc
Confidence 6778899999999987 789999999999999 6688888876 368887754 3456665543222222211 132
Q ss_pred ------------eeeeeeccCCCeEEEE--ecCCeEEeecCCCceeeeecc
Q 001123 490 ------------LLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 490 ------------~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
.+...+||-++|++|| |||+.-+||+.||.||+--..
T Consensus 267 FEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 267 FEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred hhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 3667889999999999 699999999999999997543
No 87
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3.5e-17 Score=177.86 Aligned_cols=266 Identities=15% Similarity=0.201 Sum_probs=198.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEE--CCCcEEEE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS--EGGGIKIW 267 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS--~DgTIRVW 267 (1149)
.+.|+++.|+++|..|++.+.|.+++++|...+. ...+..-++-.|..++|..... ++.+| .|.|||.-
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~--------~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGK--------QVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCc--------eeeEeecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence 5689999999999999999999999999998875 3566666677899999987655 55555 49999999
Q ss_pred eCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEE
Q 001123 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (1149)
Q Consensus 268 dl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~ 346 (1149)
++.+.+...-+.+ |. ..|..+..++.+....|++ |++||+||+++.+|..
T Consensus 86 sl~dNkylRYF~G-------------------H~----------~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg 136 (311)
T KOG1446|consen 86 SLHDNKYLRYFPG-------------------HK----------KRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQG 136 (311)
T ss_pred EeecCceEEEcCC-------------------CC----------ceEEEEEecCCCCeEEecccCCeEEeeEecCCCCce
Confidence 9977654443332 32 4566777778777777766 6799999999988877
Q ss_pred EEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEee-----cccc------
Q 001123 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-----KGGF------ 415 (1149)
Q Consensus 347 ~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~-----~g~~------ 415 (1149)
.+...+..+. +|.|.|-..+.+......++.+ +|.|
T Consensus 137 ~l~~~~~pi~---------------------------------AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~ 183 (311)
T KOG1446|consen 137 LLNLSGRPIA---------------------------------AFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT 183 (311)
T ss_pred EEecCCCcce---------------------------------eECCCCcEEEEecCCCeEEEEEecccCCCCceeEccC
Confidence 7665444321 2222222222222222223322 1211
Q ss_pred cCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccE----E-EEEecCCEEEEeecCcEEEEEeCC-
Q 001123 416 GDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAV----Q-CLCTFGSQIWVGYMNGIVQVLDLE- 487 (1149)
Q Consensus 416 ~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V----~-sls~dG~~LaSGs~DGtIrlWD~~- 487 (1149)
..+..+.+.+.|||||+ |+.+...+.+.+-|. +|..++++.+|...- . ++.+||+++.+|+.||+|.+|+++
T Consensus 184 ~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 184 DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence 13455677899999998 667778889999999 999999999887643 2 446799999999999999999987
Q ss_pred Cceeeeeec-cCCCeEEEEecCCeEEeecCCCceeeeecc
Q 001123 488 GNLLGGWVA-HSSPVIKMAVGAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 488 G~~l~~l~g-H~~~V~sLa~Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
|..+..|+| |.+++.++.+.+++..-++.+..+-+|=..
T Consensus 264 g~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 264 GKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPD 303 (311)
T ss_pred CcEeeEecCCCCCCccccccCCceeeeeecCceEEEEecc
Confidence 899999999 899999999999988888888999999643
No 88
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=6e-18 Score=198.25 Aligned_cols=260 Identities=20% Similarity=0.231 Sum_probs=196.5
Q ss_pred eEEEeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 001123 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNAR 223 (1149)
Q Consensus 144 ~l~ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g 223 (1149)
-+..+-...|.+|+..++..... ..++ ...|+++.++++|+.||.|-.+|.|.+||....
T Consensus 190 ~laValg~~vylW~~~s~~v~~l-------------------~~~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~ 249 (484)
T KOG0305|consen 190 VLAVALGQSVYLWSASSGSVTEL-------------------CSFG-EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ 249 (484)
T ss_pred eEEEEecceEEEEecCCCceEEe-------------------EecC-CCceEEEEECCCCCEEEEeecCCeEEEEehhhc
Confidence 33345566899999876662211 1122 578999999999999999999999999998764
Q ss_pred CCCCCCCccceEEeec-CCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeecccccccccc
Q 001123 224 LLDSDDGFGEVLSWQA-HRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLS 302 (1149)
Q Consensus 224 ~~~~~~~~~~~~~l~G-H~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~ 302 (1149)
. .+..+.+ |.+.|-++++.. ..|.+|+.|+.|..+|+...+.... . +.+|.
T Consensus 250 k--------~~~~~~~~h~~rvg~laW~~-~~lssGsr~~~I~~~dvR~~~~~~~-~-----------------~~~H~- 301 (484)
T KOG0305|consen 250 K--------KTRTLRGSHASRVGSLAWNS-SVLSSGSRDGKILNHDVRISQHVVS-T-----------------LQGHR- 301 (484)
T ss_pred c--------ccccccCCcCceeEEEeccC-ceEEEecCCCcEEEEEEecchhhhh-h-----------------hhccc-
Confidence 3 3566777 999999999994 3478999999999999976543221 0 11222
Q ss_pred ccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCC
Q 001123 303 VNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSK 381 (1149)
Q Consensus 303 ~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~ 381 (1149)
.+|-.+..++++..++|++ |..+.|||..+-+.+..+
T Consensus 302 ---------qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~--------------------------------- 339 (484)
T KOG0305|consen 302 ---------QEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTF--------------------------------- 339 (484)
T ss_pred ---------ceeeeeEECCCCCeeccCCCccceEeccCCCccccEEE---------------------------------
Confidence 5677788889999999876 567999998543333332
Q ss_pred CCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCC--CcEEEE--eCCCeEEEEeC-CCCeeEeee
Q 001123 382 KDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID--GMIWTG--GANGLLLQWDP-NGNRLQDFQ 456 (1149)
Q Consensus 382 k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~D--g~laSg--s~DgtIrlWD~-tG~~l~tl~ 456 (1149)
.+|...|.++++.|= |.||+| +.|++|++||. +|++++.+.
T Consensus 340 ----------------------------------~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd 385 (484)
T KOG0305|consen 340 ----------------------------------TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD 385 (484)
T ss_pred ----------------------------------eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc
Confidence 234444556666663 457764 46999999999 899998876
Q ss_pred cCCccEEEEEec--CCEEEE--eecCcEEEEEeCC-CceeeeeeccCCCeEEEE--ecCCeEEeecCCCceeeeeccCC
Q 001123 457 YLPFAVQCLCTF--GSQIWV--GYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSP 528 (1149)
Q Consensus 457 gH~~~V~sls~d--G~~LaS--Gs~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~sp 528 (1149)
.. ..|.+|.+. .+.|++ |..+..|+||+.. -+++..+.||+..|..++ +||..++||+.|.|+|+|++...
T Consensus 386 tg-sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 386 TG-SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred cC-CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 53 689999775 443443 5578899999965 578899999999999988 79999999999999999999764
No 89
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=2.2e-18 Score=191.08 Aligned_cols=259 Identities=13% Similarity=0.111 Sum_probs=176.4
Q ss_pred CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001123 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (1149)
Q Consensus 142 ~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~~LaSGS~DGtIRvWd 219 (1149)
++.|.+ +.|.|.-+|.+....... +..++.| ..+|..++||||.++|++++.|..+++||
T Consensus 236 GkyLAsaSkD~Taiiw~v~~d~~~k------------------l~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 236 GKYLASASKDSTAIIWIVVYDVHFK------------------LKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWD 297 (519)
T ss_pred CeeEeeccCCceEEEEEEecCccee------------------eeeeeecccCceEEEEECCCCCeEEecCchHheeecc
Confidence 445544 459999999976433221 2233445 89999999999999999999999999999
Q ss_pred CCCCCCCCCCCccceEEe-ecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccc
Q 001123 220 MNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (1149)
Q Consensus 220 l~~g~~~~~~~~~~~~~l-~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l 297 (1149)
+.+|.+ .+.+ .||...|.|+++.|||. +++||.|++|.-||++.... .
T Consensus 298 v~tgd~--------~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~-~--------------------- 347 (519)
T KOG0293|consen 298 VDTGDL--------RHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL-G--------------------- 347 (519)
T ss_pred CCcchh--------hhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchh-h---------------------
Confidence 999873 2222 35668999999999997 99999999999999964220 0
Q ss_pred cccccccceeeeecCCeEEEEEcCCCCEEEE-ecCCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeE
Q 001123 298 RSHLSVNGFSSILTSDIKNLLSDHSRAKVWS-AGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKI 376 (1149)
Q Consensus 298 ~~~~~~~g~~~~~~~dv~~las~~~~~~v~S-asd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~ 376 (1149)
...|+ -...+.+++...+|..+.. ..|..|++++..+....+..+.+ +.+.++.+|.++
T Consensus 348 ----~W~gv---r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~-~~its~~iS~d~------------ 407 (519)
T KOG0293|consen 348 ----NWEGV---RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE-QPITSFSISKDG------------ 407 (519)
T ss_pred ----ccccc---ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc-CceeEEEEcCCC------------
Confidence 00000 1134667788888877665 45778999998876655433222 222333333332
Q ss_pred EecCCCCccceeeeeeccccceEeecCCcEEEEeec------ccccCCCCce---E-EEEEcCCCcEEEEeCCCeEEEEe
Q 001123 377 VTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDDNRRT---E-ALTTSIDGMIWTGGANGLLLQWD 446 (1149)
Q Consensus 377 ~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~------g~~~~~~~~V---~-ava~s~Dg~laSgs~DgtIrlWD 446 (1149)
+.+++.-.+--..+|+. ..+.||.+.- . |..--.+..++|||+|+.|+||+
T Consensus 408 -------------------k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWh 468 (519)
T KOG0293|consen 408 -------------------KLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWH 468 (519)
T ss_pred -------------------cEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEE
Confidence 22222222222333321 1233333321 1 12222334589999999999999
Q ss_pred C-CCCeeEeeecCCccEEEEEec---CCEEEEeecCcEEEEEeCC
Q 001123 447 P-NGNRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 447 ~-tG~~l~tl~gH~~~V~sls~d---G~~LaSGs~DGtIrlWD~~ 487 (1149)
. +|+.+.+|.||...|+|++.+ ..++|||+.|||||||-..
T Consensus 469 r~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 469 RISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred ccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 9 899999999999999999874 5799999999999999854
No 90
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.80 E-value=4.2e-17 Score=189.68 Aligned_cols=380 Identities=13% Similarity=0.129 Sum_probs=235.0
Q ss_pred eCCeEEE-eCCCCEEEEeCCCCCCCCcc---ccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCCEEEEEeCCCeE
Q 001123 141 TEEQLWA-GGENGLRVWNLKELYDESES---DSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRDGRI 215 (1149)
Q Consensus 141 ~~~~l~a-g~D~tVrvWd~~~g~~~~~~---~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~~LaSGS~DGtI 215 (1149)
..+.++. .++|.||++|-++..-..++ ..-|.-...+-+....+.++-.+ ..-..++.|++....|..--.|..+
T Consensus 269 s~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSl 348 (1080)
T KOG1408|consen 269 SSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSL 348 (1080)
T ss_pred ecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceE
Confidence 3455554 46999999998875433220 00000001111111111121122 2345788999999999999999999
Q ss_pred EEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeC------------CCcEEEEECCCcEEEEeCCCcceeeecC--CC
Q 001123 216 MCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS------------YGDLWSGSEGGGIKIWPWEAIEKALSLK--PE 281 (1149)
Q Consensus 216 RvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSp------------dG~L~SGS~DgTIRVWdl~t~~~~~~l~--~~ 281 (1149)
-|||+..- +....+..+--|...|++|---| .+-+.|+|.|+|||||+++.+..-..+. ..
T Consensus 349 YvWDvrD~-----~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNil 423 (1080)
T KOG1408|consen 349 YVWDVRDV-----NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNIL 423 (1080)
T ss_pred EEEecccc-----ccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccc
Confidence 99999742 22333566677999999987655 2337899999999999997633211100 00
Q ss_pred cceeeE-EEeeecccccccc------ccccceeeeecCCeEEEEEcCCCCEEEEecC-CceEEEEcCCccEEEEEecCCc
Q 001123 282 ERHTAA-LIVERSYIDLRSH------LSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQ 353 (1149)
Q Consensus 282 ~~~~~a-~~~~~~~~~l~~~------~~~~g~~~~~~~dv~~las~~~~~~v~Sasd-~tIrLWD~~TG~~L~~l~~~g~ 353 (1149)
...+.. ...+.....+... ...+.++. +--.+++++.++++..++++.. +++|++|+..-+.+-....|..
T Consensus 424 s~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d-~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHes 502 (1080)
T KOG1408|consen 424 SANLSKIPYEDSTQQIMHDASAGIFDKALVSTCD-SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHES 502 (1080)
T ss_pred hhhhhcCccccCchhhhhhccCCcccccchhhcC-cccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccc
Confidence 000000 0000000000000 00001111 1234889999999999988864 6799999988777766666665
Q ss_pred eeeEEeecc-----------CCCcccc-ccce--eeEEe-cCCCCccceeeeeeccc--cceEeecCCc--EEEEeec--
Q 001123 354 IENRVDMSL-----------LPDFAME-DEFK--TKIVT-SSKKDKAQSSFGFFQRS--RNAIMGAADA--VRRVAAK-- 412 (1149)
Q Consensus 354 ~~~~v~~S~-----------~~~~~~~-~~~~--~~~~s-~~~k~~~~~si~f~~~~--~~~i~G~~d~--v~rv~~~-- 412 (1149)
.+-++.+|- ..+.++- -+++ -.++. -.+|...++++.|.-.+ .+.++..+|. ..|+..+
T Consensus 503 EilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~ 582 (1080)
T KOG1408|consen 503 EILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKAS 582 (1080)
T ss_pred eeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhcccc
Confidence 544444432 2221110 0000 00111 12344566777887665 4455555554 2344321
Q ss_pred -c-cccCCCC-----ceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeec---CCccEEEE--EecCCEEEEeecC
Q 001123 413 -G-GFGDDNR-----RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQY---LPFAVQCL--CTFGSQIWVGYMN 478 (1149)
Q Consensus 413 -g-~~~~~~~-----~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~g---H~~~V~sl--s~dG~~LaSGs~D 478 (1149)
+ .|..|.. .+..++..|... +++++.|..|+|+|+ .|+..+.|+| |.+..-.+ .+.|-|||+.+.|
T Consensus 583 ~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsd 662 (1080)
T KOG1408|consen 583 SGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSD 662 (1080)
T ss_pred CceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecC
Confidence 1 3444432 456677777754 889999999999999 8999999987 43333334 4579999999999
Q ss_pred cEEEEEe-CCCceeeeeeccCCCeEEEEe--cCCeEEeecCCCceeeeecc
Q 001123 479 GIVQVLD-LEGNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 479 GtIrlWD-~~G~~l~~l~gH~~~V~sLa~--Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
.++-++| ..|+|++.+.||...|+.|.+ |-+.|+|+|.||.|-+|.+-
T Consensus 663 ktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 663 KTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred CceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECc
Confidence 9999999 569999999999999999984 88999999999999999974
No 91
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.79 E-value=6.9e-18 Score=206.32 Aligned_cols=300 Identities=20% Similarity=0.231 Sum_probs=212.7
Q ss_pred CCceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCC-C---CCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCc
Q 001123 191 VSSVMCMVGDEASGVVWSGH--RDGRIMCWKMNARL-L---DSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG 263 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS--~DGtIRvWdl~~g~-~---~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgT 263 (1149)
...|.+++++|||..+|||+ .||.+++|+.+.-. + .+.+.-+++.+..-|.+.|+||.|||||+ |||||+|+.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence 55699999999999999999 99999999976421 0 01112234556788999999999999998 899999999
Q ss_pred EEEEeCCCcceeeec------CCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEE
Q 001123 264 IKIWPWEAIEKALSL------KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFAL 336 (1149)
Q Consensus 264 IRVWdl~t~~~~~~l------~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrL 336 (1149)
|-||........-.+ ...+.+.. ...+++| .++|..++.++++..++|++ |.+|.|
T Consensus 93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk~-------~~~l~~H----------~~DV~Dv~Wsp~~~~lvS~s~DnsVii 155 (942)
T KOG0973|consen 93 VMIWERAEIGSGTVFGSTGGAKNVESWKV-------VSILRGH----------DSDVLDVNWSPDDSLLVSVSLDNSVII 155 (942)
T ss_pred EEEeeecccCCcccccccccccccceeeE-------EEEEecC----------CCccceeccCCCccEEEEecccceEEE
Confidence 999998741000000 00111111 1123444 38899999999999999987 688999
Q ss_pred EEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeeccccc
Q 001123 337 WDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFG 416 (1149)
Q Consensus 337 WD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~ 416 (1149)
||.+|.++++++.+|...
T Consensus 156 wn~~tF~~~~vl~~H~s~-------------------------------------------------------------- 173 (942)
T KOG0973|consen 156 WNAKTFELLKVLRGHQSL-------------------------------------------------------------- 173 (942)
T ss_pred Eccccceeeeeeeccccc--------------------------------------------------------------
Confidence 999999888887665432
Q ss_pred CCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCc------cEE--EEEecCCEEEEee----cCcEEE
Q 001123 417 DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPF------AVQ--CLCTFGSQIWVGY----MNGIVQ 482 (1149)
Q Consensus 417 ~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~------~V~--sls~dG~~LaSGs----~DGtIr 482 (1149)
|..|.+.|-|+ +||-+.|++|++|.+ +=.+.+.++++-. -++ +.++||++|+++- .-.+|.
T Consensus 174 -----VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~ 248 (942)
T KOG0973|consen 174 -----VKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA 248 (942)
T ss_pred -----ccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence 22344666665 899999999999997 4345555555432 122 4467999999875 345899
Q ss_pred EEeCC-CceeeeeeccCCCeEEEEec-------CC------------eEEeecCCCceeeeeccCCCCCchhhhhhcccc
Q 001123 483 VLDLE-GNLLGGWVAHSSPVIKMAVG-------AG------------YIFTLANHGGIRGWNVTSPGPLDSILCKELAGK 542 (1149)
Q Consensus 483 lWD~~-G~~l~~l~gH~~~V~sLa~D-------g~------------~LaSgS~DgtIRlWdl~sp~pld~~i~~~l~~r 542 (1149)
|.+.+ .+.-..|.||.+++..+.+. .+ .+|+||.|++|-||....|.|+=-+. ++.
T Consensus 249 IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~--~lf-- 324 (942)
T KOG0973|consen 249 IIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH--NLF-- 324 (942)
T ss_pred EEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh--hhh--
Confidence 99976 46678999999999998731 11 57899999999999998888864321 111
Q ss_pred ccceeeeeceEEEEEEEEeCCCCCCchhhcccccCCCCCcceEEEEeeccccc
Q 001123 543 EFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMG 595 (1149)
Q Consensus 543 e~~yt~~~~~~i~v~TWNv~~~~~~~~~l~~wl~~~~~~~Di~viGlQEi~~~ 595 (1149)
+-.|.-.+|+-.|.. .|.+. -|--|++|.|||=|++
T Consensus 325 --------~~SI~DmsWspdG~~--------LfacS-~DGtV~~i~Fee~ElG 360 (942)
T KOG0973|consen 325 --------NKSIVDMSWSPDGFS--------LFACS-LDGTVALIHFEEKELG 360 (942)
T ss_pred --------cCceeeeeEcCCCCe--------EEEEe-cCCeEEEEEcchHHhC
Confidence 226777889865421 23221 2445999999998765
No 92
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.79 E-value=2.5e-17 Score=184.02 Aligned_cols=269 Identities=16% Similarity=0.168 Sum_probs=211.6
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
...++++...+....+.+|+.|.++.++|...++. +.+|+||+-.|+++.|+|+.. ++++|.|..||||..
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~--------l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~ 290 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQI--------LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSV 290 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhh--------hhhccCcceEEEEEEeccchhheeecCCcceEEeecc
Confidence 45678888888778899999999999999987653 678999999999999999986 689999999999998
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEE
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l 348 (1149)
..........+ | ...|..+...+.+..+.+++ ++++..-|.++|.++.+.
T Consensus 291 ~~~s~~~~~~~-------------------h----------~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~v 341 (506)
T KOG0289|consen 291 PLSSEPTSSRP-------------------H----------EEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVV 341 (506)
T ss_pred ccccCcccccc-------------------c----------cccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEE
Confidence 54221111111 1 24455555556666655554 578899999999888765
Q ss_pred ecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEee------cccccCCCCce
Q 001123 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA------KGGFGDDNRRT 422 (1149)
Q Consensus 349 ~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~------~g~~~~~~~~V 422 (1149)
...+. +...++..|.|+|....+|..|++.++|+ ...|.+|...|
T Consensus 342 s~~~s-----------------------------~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~v 392 (506)
T KOG0289|consen 342 SDETS-----------------------------DVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPV 392 (506)
T ss_pred eeccc-----------------------------cceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCce
Confidence 53211 12234668899998899999999999997 24799999999
Q ss_pred EEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecC-CccEEEEEec--CCEEEEeecCcEEEEEeC---CCceeeee
Q 001123 423 EALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL-PFAVQCLCTF--GSQIWVGYMNGIVQVLDL---EGNLLGGW 494 (1149)
Q Consensus 423 ~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH-~~~V~sls~d--G~~LaSGs~DGtIrlWD~---~G~~l~~l 494 (1149)
.++.|+.+|+ +++++.|+.|++||+ .-+..+++.-. ...|+++++| |++|+.++.|=+|++.+- +.+++..+
T Consensus 393 k~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~ 472 (506)
T KOG0289|consen 393 KAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL 472 (506)
T ss_pred eEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh
Confidence 9999999998 789999999999999 55666666543 2468999886 999999999988888883 25788899
Q ss_pred eccCCCeEEEEe--cCCeEEeecCCCceeeeec
Q 001123 495 VAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 495 ~gH~~~V~sLa~--Dg~~LaSgS~DgtIRlWdl 525 (1149)
.-|++..+.+.+ +.++++++|.|...|+..+
T Consensus 473 ~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 473 ADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred hhcccccceeeecccceEEeeccchhheEEeec
Confidence 999998998886 6689999999999888653
No 93
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.78 E-value=8e-19 Score=195.04 Aligned_cols=257 Identities=16% Similarity=0.221 Sum_probs=187.2
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
.+.|..+.|-++...|++|+.|..|++|++.++.+ ..+.+|.|-.++|+++.|.++++ ++++|.|+++|+|++
T Consensus 175 ~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~------~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 175 EGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS------ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred ccccceeEEccCcchhhhcchhhhhhhhhcccchh------hhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 67788999999989999999999999999988664 44667889999999999999997 789999999999999
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEE
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l 348 (1149)
.......++++|. ++|.++-+..+..++++++ |.+|++||+..+.|.+++
T Consensus 249 d~~r~~~TLsGHt-----------------------------dkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~ 299 (459)
T KOG0288|consen 249 DSLRLRHTLSGHT-----------------------------DKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTV 299 (459)
T ss_pred cchhhhhhhcccc-----------------------------cceeeehhhccccceeeccccchhhhhhhhhhheeccc
Confidence 7755433343322 3444444444444467765 689999999998887765
Q ss_pred ecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEc
Q 001123 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (1149)
Q Consensus 349 ~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s 428 (1149)
-+-.+. ..|..+
T Consensus 300 l~~S~c--------------------------------------------------------------------nDI~~~ 311 (459)
T KOG0288|consen 300 LPGSQC--------------------------------------------------------------------NDIVCS 311 (459)
T ss_pred cccccc--------------------------------------------------------------------cceEec
Confidence 321111 011111
Q ss_pred CCCcEEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEE--ecCCEEEEeecCcEEEEEeCCCc-eeeeee------ccC
Q 001123 429 IDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEGN-LLGGWV------AHS 498 (1149)
Q Consensus 429 ~Dg~laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls--~dG~~LaSGs~DGtIrlWD~~G~-~l~~l~------gH~ 498 (1149)
.-.++||..|++||+||. .+.+++....|. .|.++. ++|..|.+.+.|.++.+.|+.+. ..+.+. +|.
T Consensus 312 -~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asD 389 (459)
T KOG0288|consen 312 -ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASD 389 (459)
T ss_pred -ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccc
Confidence 113679999999999998 788999988875 899884 58999999999999999998754 344444 444
Q ss_pred CCeEEEEecCCeEEeecCCCceeeeeccCCCCCchhhhhhccccccceeeeeceEEEEEEEEeCC
Q 001123 499 SPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQ 563 (1149)
Q Consensus 499 ~~V~sLa~Dg~~LaSgS~DgtIRlWdl~sp~pld~~i~~~l~~re~~yt~~~~~~i~v~TWNv~~ 563 (1149)
-.-..++||+.|+++||.||.|+||++.+ +-++..+.. ...+--|+.+.||=.|
T Consensus 390 wtrvvfSpd~~YvaAGS~dgsv~iW~v~t-gKlE~~l~~----------s~s~~aI~s~~W~~sG 443 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAAGSADGSVYIWSVFT-GKLEKVLSL----------STSNAAITSLSWNPSG 443 (459)
T ss_pred cceeEECCCCceeeeccCCCcEEEEEccC-ceEEEEecc----------CCCCcceEEEEEcCCC
Confidence 22222348999999999999999999865 233322221 1112279999999753
No 94
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.2e-17 Score=176.02 Aligned_cols=217 Identities=16% Similarity=0.223 Sum_probs=154.7
Q ss_pred CCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc--EEEEECCCcEEEEeCCCc-ceeeecCCCcceeeE
Q 001123 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAI-EKALSLKPEERHTAA 287 (1149)
Q Consensus 211 ~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~--L~SGS~DgTIRVWdl~t~-~~~~~l~~~~~~~~a 287 (1149)
-.|++-|-++..+. .+.+...+. -.+.+..|+++++.. +++++.||++||||+.-. .+...++.+..
T Consensus 36 G~G~L~ile~~~~~-----gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~---- 105 (311)
T KOG0277|consen 36 GNGRLFILEVTDPK-----GIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKR---- 105 (311)
T ss_pred cCceEEEEecCCCC-----CeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhh----
Confidence 35778888875322 223333332 368899999999764 889999999999996321 12222222222
Q ss_pred EEeeeccccccccccccceeeeecCCeEEEEEcCC-CC-EEEEecCCceEEEEcCCccEEEEEecCCceeeEEeeccCCC
Q 001123 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RA-KVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (1149)
Q Consensus 288 ~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~-~~-~v~Sasd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~ 365 (1149)
+|..+-.+.. +. .|.|+-|+||||||...++.+.+|.+|...
T Consensus 106 -------------------------EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~----------- 149 (311)
T KOG0277|consen 106 -------------------------EVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSC----------- 149 (311)
T ss_pred -------------------------heEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccE-----------
Confidence 2222222221 22 334444789999999887777776654433
Q ss_pred ccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCC--CcEEEEeCCCeEE
Q 001123 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID--GMIWTGGANGLLL 443 (1149)
Q Consensus 366 ~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~D--g~laSgs~DgtIr 443 (1149)
|...+++|- +.++++|.|++++
T Consensus 150 --------------------------------------------------------Iy~a~~sp~~~nlfas~Sgd~~l~ 173 (311)
T KOG0277|consen 150 --------------------------------------------------------IYQAAFSPHIPNLFASASGDGTLR 173 (311)
T ss_pred --------------------------------------------------------EEEEecCCCCCCeEEEccCCceEE
Confidence 334445553 3478999999999
Q ss_pred EEeC--CCCeeEeeecCCccEEEEEe---cCCEEEEeecCcEEEEEeCC--CceeeeeeccCCCeEEEEe---cCCeEEe
Q 001123 444 QWDP--NGNRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAV---GAGYIFT 513 (1149)
Q Consensus 444 lWD~--tG~~l~tl~gH~~~V~sls~---dG~~LaSGs~DGtIrlWD~~--G~~l~~l~gH~~~V~sLa~---Dg~~LaS 513 (1149)
+||+ .|+.+. +..|...|.|..+ +-..|++|+.|+.||.||+. ..++..+.||.-.|..|.. ....|+|
T Consensus 174 lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaS 252 (311)
T KOG0277|consen 174 LWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLAS 252 (311)
T ss_pred EEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhh
Confidence 9999 477766 8899989998854 67899999999999999976 5789999999999999984 4568999
Q ss_pred ecCCCceeeeeccCCCC
Q 001123 514 LANHGGIRGWNVTSPGP 530 (1149)
Q Consensus 514 gS~DgtIRlWdl~sp~p 530 (1149)
+|.|-|+|+||.+.++.
T Consensus 253 asYDmT~riw~~~~~ds 269 (311)
T KOG0277|consen 253 ASYDMTVRIWDPERQDS 269 (311)
T ss_pred ccccceEEecccccchh
Confidence 99999999999876544
No 95
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.78 E-value=3.3e-17 Score=200.39 Aligned_cols=294 Identities=17% Similarity=0.149 Sum_probs=197.7
Q ss_pred eEEEEEee-CCeEEE-e---CCCCEEEEeCCCCCCCCccccccccCCCCCCC-CC-CceeeeecCCceEEEEEcCCCCEE
Q 001123 134 FLRTIVCT-EEQLWA-G---GENGLRVWNLKELYDESESDSVSVSKSKGEDG-TA-PFKESVKGVSSVMCMVGDEASGVV 206 (1149)
Q Consensus 134 ~l~~l~~~-~~~l~a-g---~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~-~~-~~~~s~~G~~~V~~lafs~dg~~L 206 (1149)
-+.++.++ ....+| | .|+++++|+.+-...-.. ..++. .. .....-| .+.|+|+.|++||++|
T Consensus 15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~---------~~~~~l~k~l~~m~~h-~~sv~CVR~S~dG~~l 84 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKE---------EKNENLPKHLCTMDDH-DGSVNCVRFSPDGSYL 84 (942)
T ss_pred eEEEEEecCCceeEecCCccccccceeeccccccchhh---------hhhcccchhheeeccc-cCceeEEEECCCCCeE
Confidence 36677777 333344 3 499999999774331110 11111 11 1112234 8899999999999999
Q ss_pred EEEeCCCeEEEEECCC----CCCC------CCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCccee
Q 001123 207 WSGHRDGRIMCWKMNA----RLLD------SDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKA 275 (1149)
Q Consensus 207 aSGS~DGtIRvWdl~~----g~~~------~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~ 275 (1149)
||||.|+.|.+|.-.. ..|- +....+....|.||.+-|..|+++|++. |+|+|.|++|-|||..+.+..
T Consensus 85 AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~ 164 (942)
T KOG0973|consen 85 ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELL 164 (942)
T ss_pred eeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceee
Confidence 9999999999999873 1110 0122334667899999999999999998 799999999999999877443
Q ss_pred eecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCce
Q 001123 276 LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQI 354 (1149)
Q Consensus 276 ~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~ 354 (1149)
..+ ++|. +.|+.+.+++-|..+++-+ |++|++|++.+-.+.+.....-+-
T Consensus 165 ~vl-------------------~~H~----------s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~ 215 (942)
T KOG0973|consen 165 KVL-------------------RGHQ----------SLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEE 215 (942)
T ss_pred eee-------------------eccc----------ccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhh
Confidence 332 3343 6678888999999888855 679999997654444443221110
Q ss_pred eeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-E
Q 001123 355 ENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-I 433 (1149)
Q Consensus 355 ~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-l 433 (1149)
. ........+.+||||. |
T Consensus 216 -----------------------------~--------------------------------~~~T~f~RlSWSPDG~~l 234 (942)
T KOG0973|consen 216 -----------------------------S--------------------------------PLTTFFLRLSWSPDGHHL 234 (942)
T ss_pred -----------------------------C--------------------------------CCcceeeecccCCCcCee
Confidence 0 0000112234778876 4
Q ss_pred EEEeC----CCeEEEEeCCC-CeeEeeecCCccEEEEEec-------CC------------EEEEeecCcEEEEEeCC-C
Q 001123 434 WTGGA----NGLLLQWDPNG-NRLQDFQYLPFAVQCLCTF-------GS------------QIWVGYMNGIVQVLDLE-G 488 (1149)
Q Consensus 434 aSgs~----DgtIrlWD~tG-~~l~tl~gH~~~V~sls~d-------G~------------~LaSGs~DGtIrlWD~~-G 488 (1149)
+++.+ -.++.|-+..+ ++=..|.||..++.++.|+ .+ .+|+||.|++|-||... -
T Consensus 235 as~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~ 314 (942)
T KOG0973|consen 235 ASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP 314 (942)
T ss_pred cchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC
Confidence 44332 23677777733 5667888998888888653 12 68999999999999974 2
Q ss_pred ceeee-eeccCCCeEEEE--ecCCeEEeecCCCceeeeeccC
Q 001123 489 NLLGG-WVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 489 ~~l~~-l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
+++.. ..--...|..++ +||-.|+.+|.||+|.+-.++.
T Consensus 315 RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 315 RPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred CchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 33211 111235688888 5899999999999999998864
No 96
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.78 E-value=1.5e-16 Score=177.31 Aligned_cols=252 Identities=12% Similarity=0.104 Sum_probs=166.3
Q ss_pred eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCCC
Q 001123 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV-WSGHRDGRIMCWKMNARLLD 226 (1149)
Q Consensus 148 g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~L-aSGS~DGtIRvWdl~~g~~~ 226 (1149)
+.|+.|++||++++..... +.+...+.+++|+|+|+.+ ++++.|+.|++||+.++.
T Consensus 8 ~~d~~v~~~d~~t~~~~~~---------------------~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~-- 64 (300)
T TIGR03866 8 EKDNTISVIDTATLEVTRT---------------------FPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGE-- 64 (300)
T ss_pred cCCCEEEEEECCCCceEEE---------------------EECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCc--
Confidence 4689999999987765432 1112335679999999876 678899999999998764
Q ss_pred CCCCccceEEeecCCCCEEEEEEeCCCc-EE-EEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeecccccccccccc
Q 001123 227 SDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (1149)
Q Consensus 227 ~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~-SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~ 304 (1149)
....+..|.+ +..++|+|+|+ |+ +++.|++|++||+.+.+....+..
T Consensus 65 ------~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~------------------------ 113 (300)
T TIGR03866 65 ------VIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV------------------------ 113 (300)
T ss_pred ------EEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC------------------------
Confidence 2344555544 46789999997 54 567799999999976443221110
Q ss_pred ceeeeecCCeEEEEEcCCCCEEEEecC--CceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCC
Q 001123 305 GFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKK 382 (1149)
Q Consensus 305 g~~~~~~~dv~~las~~~~~~v~Sasd--~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k 382 (1149)
......+++++++..++.+.. ..+.+||..+++++..+...
T Consensus 114 ------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~------------------------------- 156 (300)
T TIGR03866 114 ------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD------------------------------- 156 (300)
T ss_pred ------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-------------------------------
Confidence 011234566677777665543 24677888776554322100
Q ss_pred CccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EE-EEeCCCeEEEEeC-CCCeeEeeecCC
Q 001123 383 DKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IW-TGGANGLLLQWDP-NGNRLQDFQYLP 459 (1149)
Q Consensus 383 ~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-la-Sgs~DgtIrlWD~-tG~~l~tl~gH~ 459 (1149)
.....+++++||+ ++ ++..++.|++||+ ++++++.+..+.
T Consensus 157 -------------------------------------~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~ 199 (300)
T TIGR03866 157 -------------------------------------QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEI 199 (300)
T ss_pred -------------------------------------CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecc
Confidence 0112356788886 54 4446899999999 788877765332
Q ss_pred -----cc--EEE--EEecCCEEEEe-ecCcEEEEEeCC-CceeeeeeccCCCeEEEE--ecCCeEEee-cCCCceeeeec
Q 001123 460 -----FA--VQC--LCTFGSQIWVG-YMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTL-ANHGGIRGWNV 525 (1149)
Q Consensus 460 -----~~--V~s--ls~dG~~LaSG-s~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa--~Dg~~LaSg-S~DgtIRlWdl 525 (1149)
.. ... ++++|++++++ ..++.|.+||++ ++.+..+ .|...+.+++ ++|++|+++ +.+++|++||+
T Consensus 200 ~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 200 PGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred cccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 11 122 35578886554 456789999986 6665544 3344677777 699999876 56999999998
Q ss_pred cCC
Q 001123 526 TSP 528 (1149)
Q Consensus 526 ~sp 528 (1149)
.+.
T Consensus 279 ~~~ 281 (300)
T TIGR03866 279 AAL 281 (300)
T ss_pred CCC
Confidence 763
No 97
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=4e-18 Score=183.32 Aligned_cols=232 Identities=14% Similarity=0.176 Sum_probs=161.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
...|.-++.+..-..+.|+|.|.+.++|.+++|.| +.++.||.|.|++|.|++.+. +++||.|+|..||..
T Consensus 148 kDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C--------L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 148 KDGIWHVAADSTQPICGTASADHTARIWSLESGAC--------LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred ccceeeehhhcCCcceeecccccceeEEeeccccc--------eeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 77888888887777999999999999999999986 788999999999999999988 579999999999985
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEe
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~ 349 (1149)
.-.-..-.-.... +|. ...+..+ ++... + |... ..+
T Consensus 220 av~~~vP~~~a~~----------------~hS--------sEeE~e~--sDe~~-----------~--d~d~-----~~~ 255 (481)
T KOG0300|consen 220 AVNWEVPSNNAPS----------------DHS--------SEEEEEH--SDEHN-----------R--DTDS-----SEK 255 (481)
T ss_pred hhcCcCCCCCCCC----------------CCC--------chhhhhc--ccccc-----------c--cccc-----ccc
Confidence 2100000000000 000 0000000 00000 0 0000 000
Q ss_pred cCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcC
Q 001123 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (1149)
Q Consensus 350 ~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~ 429 (1149)
.++. ..|+. .-.|.+|...|.+.-+-.
T Consensus 256 sD~~----------------------------------------------------tiRvP-l~~ltgH~~vV~a~dWL~ 282 (481)
T KOG0300|consen 256 SDGH----------------------------------------------------TIRVP-LMRLTGHRAVVSACDWLA 282 (481)
T ss_pred cCCc----------------------------------------------------eeeee-eeeeeccccceEehhhhc
Confidence 0000 00110 011445555555544444
Q ss_pred CC-cEEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC--CceeeeeeccCCCeEE
Q 001123 430 DG-MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIK 503 (1149)
Q Consensus 430 Dg-~laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~--G~~l~~l~gH~~~V~s 503 (1149)
.| ++++||.|.|..+||+ +|+.++.|.||....+-.+. ..+.+++.|.|.+.|+||.. =.-+..|+||++.|++
T Consensus 283 gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS 362 (481)
T KOG0300|consen 283 GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTS 362 (481)
T ss_pred CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeE
Confidence 44 5899999999999999 89999999999998885543 56788899999999999965 3567899999999999
Q ss_pred EEe-cCCeEEeecCCCceeeeeccC
Q 001123 504 MAV-GAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 504 La~-Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
+.+ -+..++|||.|.|||+||+..
T Consensus 363 ~vF~~dd~vVSgSDDrTvKvWdLrN 387 (481)
T KOG0300|consen 363 VVFNTDDRVVSGSDDRTVKVWDLRN 387 (481)
T ss_pred EEEecCCceeecCCCceEEEeeecc
Confidence 885 566799999999999999864
No 98
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.77 E-value=5.1e-17 Score=172.05 Aligned_cols=251 Identities=16% Similarity=0.200 Sum_probs=176.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc--EEEEECCCcEEEEe
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWP 268 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~--L~SGS~DgTIRVWd 268 (1149)
.+.|-+++|+-+|..|+||+.|+++++|+++.... ......+||.+.|--++++|-.. ++++|.|++||+||
T Consensus 20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~------~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF------RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred hhcceEEEEcccCceeeecccCCceEEEEecchhh------hhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 67889999999999999999999999999987541 22344689999999999998643 78999999999999
Q ss_pred CCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEe-cCCceEEEEcCCccEEEE
Q 001123 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKV 347 (1149)
Q Consensus 269 l~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sa-sd~tIrLWD~~TG~~L~~ 347 (1149)
..++++....... +.-.....++++..++.+ .++-|..-|+++-+.+..
T Consensus 94 ~r~~k~~~~i~~~------------------------------~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~ 143 (313)
T KOG1407|consen 94 IRSGKCTARIETK------------------------------GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNE 143 (313)
T ss_pred eccCcEEEEeecc------------------------------CcceEEEEcCCCCEEEEecCcccEEEEEecccceeeh
Confidence 9887765432110 111223445555554443 456788889888776665
Q ss_pred EecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEe-e----cccccCCCCce
Q 001123 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVA-A----KGGFGDDNRRT 422 (1149)
Q Consensus 348 l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~-~----~g~~~~~~~~V 422 (1149)
.+..-.. +-..+.-..+.. | ++...+.+..+. . ...+..|....
T Consensus 144 ~~~~~e~-ne~~w~~~nd~F-----------------------f-------lt~GlG~v~ILsypsLkpv~si~AH~snC 192 (313)
T KOG1407|consen 144 EQFKFEV-NEISWNNSNDLF-----------------------F-------LTNGLGCVEILSYPSLKPVQSIKAHPSNC 192 (313)
T ss_pred hccccee-eeeeecCCCCEE-----------------------E-------EecCCceEEEEeccccccccccccCCcce
Confidence 4322111 111111111100 0 111111111110 0 12345677777
Q ss_pred EEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-Cceeeeeecc
Q 001123 423 EALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH 497 (1149)
Q Consensus 423 ~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH 497 (1149)
.|+.|+|+|+ +|+|++|..+-|||+ +--|++.+..+..+|.+|++ ||++||+||.|-.|-|=+++ |..+... -|
T Consensus 193 icI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI-~~ 271 (313)
T KOG1407|consen 193 ICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI-PC 271 (313)
T ss_pred EEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEe-ec
Confidence 7889999997 899999999999999 67899999999999998876 79999999999999999986 7766654 47
Q ss_pred CCCeEEEEecCC
Q 001123 498 SSPVIKMAVGAG 509 (1149)
Q Consensus 498 ~~~V~sLa~Dg~ 509 (1149)
.++-.+||+.++
T Consensus 272 ~~~t~tVAWHPk 283 (313)
T KOG1407|consen 272 EGPTFTVAWHPK 283 (313)
T ss_pred cCCceeEEecCC
Confidence 888999997665
No 99
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.77 E-value=4.4e-17 Score=175.54 Aligned_cols=243 Identities=18% Similarity=0.220 Sum_probs=149.2
Q ss_pred CCeEEEeC-CCCEEEEeCCCC-CCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001123 142 EEQLWAGG-ENGLRVWNLKEL-YDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (1149)
Q Consensus 142 ~~~l~ag~-D~tVrvWd~~~g-~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWd 219 (1149)
...+.||+ |++||+|+++.. ..... ... -+ .++|+|++|+.||..+++|+.|+.+++||
T Consensus 40 ~~~~~A~SWD~tVR~wevq~~g~~~~k----------------a~~--~~-~~PvL~v~WsddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 40 DNLLAAGSWDGTVRIWEVQNSGQLVPK----------------AQQ--SH-DGPVLDVCWSDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred CceEEecccCCceEEEEEecCCcccch----------------hhh--cc-CCCeEEEEEccCCceEEeeccCCceEEEE
Confidence 34444655 999999999862 22111 011 12 68999999999999999999999999999
Q ss_pred CCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc---EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeecccc
Q 001123 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD---LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (1149)
Q Consensus 220 l~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~---L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~ 296 (1149)
+.+++ ..+...|.++|.++.|-+... |+|||+|+|||.||+....+..++...++.
T Consensus 101 L~S~Q---------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRv------------ 159 (347)
T KOG0647|consen 101 LASGQ---------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERV------------ 159 (347)
T ss_pred ccCCC---------eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecccee------------
Confidence 99976 667788999999999987543 799999999999999765444333222111
Q ss_pred ccccccccceeeeecCCeEEEEEcCCCC-EEEEecCCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceee
Q 001123 297 LRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375 (1149)
Q Consensus 297 l~~~~~~~g~~~~~~~dv~~las~~~~~-~v~Sasd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~ 375 (1149)
.+.+-... .+++.++..|.+++++.+.... +... |+
T Consensus 160 --------------------Ya~Dv~~pm~vVata~r~i~vynL~n~~te~--k~~~--------Sp------------- 196 (347)
T KOG0647|consen 160 --------------------YAADVLYPMAVVATAERHIAVYNLENPPTEF--KRIE--------SP------------- 196 (347)
T ss_pred --------------------eehhccCceeEEEecCCcEEEEEcCCCcchh--hhhc--------Cc-------------
Confidence 11111111 2233445678899887543211 0000 00
Q ss_pred EEecCCCCccceeeeeeccccceEeecCCcEEEEee--c----c--cccCC---------CCceEEEEEcCC-CcEEEEe
Q 001123 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--K----G--GFGDD---------NRRTEALTTSID-GMIWTGG 437 (1149)
Q Consensus 376 ~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~--~----g--~~~~~---------~~~V~ava~s~D-g~laSgs 437 (1149)
. .-..++++++++....+.|+.+|-..+.. . . +|..| ...|+.|+|.|- |.+++++
T Consensus 197 ----L--k~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaG 270 (347)
T KOG0647|consen 197 ----L--KWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAG 270 (347)
T ss_pred ----c--cceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEec
Confidence 0 01123445555544445555554322221 0 0 12222 224555667664 6677888
Q ss_pred CCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEE
Q 001123 438 ANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIW 473 (1149)
Q Consensus 438 ~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~La 473 (1149)
+||+..+||- .-..|.+...|..+|.|-++ +|+++|
T Consensus 271 sDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifa 309 (347)
T KOG0647|consen 271 SDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFA 309 (347)
T ss_pred CCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEE
Confidence 8888888887 34566677777777776665 466554
No 100
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=2.3e-17 Score=187.12 Aligned_cols=221 Identities=20% Similarity=0.306 Sum_probs=166.4
Q ss_pred CCeEEE-eC-CCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCC-CCEEEEEeCCCeEEEE
Q 001123 142 EEQLWA-GG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCW 218 (1149)
Q Consensus 142 ~~~l~a-g~-D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~d-g~~LaSGS~DGtIRvW 218 (1149)
+++|+| |. .|.|+|+|.++...++. +. .| +.+|..+-|+|+ +++++||+.|+.+++|
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~-----------------~~--ah-~apv~~~~f~~~d~t~l~s~sDd~v~k~~ 138 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQ-----------------LY--AH-QAPVHVTKFSPQDNTMLVSGSDDKVVKYW 138 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHH-----------------Hh--hc-cCceeEEEecccCCeEEEecCCCceEEEE
Confidence 456655 54 55599999765333332 11 23 778999999985 6899999999999999
Q ss_pred ECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc--EEEEECCCcEEEEeCCCc-ceeeecCCCcceeeEEEeeeccc
Q 001123 219 KMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAI-EKALSLKPEERHTAALIVERSYI 295 (1149)
Q Consensus 219 dl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~--L~SGS~DgTIRVWdl~t~-~~~~~l~~~~~~~~a~~~~~~~~ 295 (1149)
|+.++. ....+.||++.|.|.+++|... ++|||-||+||+||+.+. .....+
T Consensus 139 d~s~a~--------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el----------------- 193 (487)
T KOG0310|consen 139 DLSTAY--------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL----------------- 193 (487)
T ss_pred EcCCcE--------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-----------------
Confidence 998854 3567899999999999999765 689999999999999653 222221
Q ss_pred cccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceee
Q 001123 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375 (1149)
Q Consensus 296 ~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~ 375 (1149)
+|+ ..|..+++-+++.++++|+...+|+||+.+|..+-+.
T Consensus 194 ---nhg----------~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~--------------------------- 233 (487)
T KOG0310|consen 194 ---NHG----------CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTS--------------------------- 233 (487)
T ss_pred ---cCC----------CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhh---------------------------
Confidence 121 3455666778889999999999999999876432110
Q ss_pred EEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeE
Q 001123 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQ 453 (1149)
Q Consensus 376 ~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~ 453 (1149)
+..|...|+|+.+..+++ |+||+-|+.|+++|. +-+.+.
T Consensus 234 ---------------------------------------~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~ 274 (487)
T KOG0310|consen 234 ---------------------------------------MFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVH 274 (487)
T ss_pred ---------------------------------------hhcccceEEEEEeecCCceEeecccccceEEEEccceEEEE
Confidence 223666778888777765 999999999999998 458888
Q ss_pred eeecCCccEEEEE--ecCCEEEEeecCcEEEEEeCC
Q 001123 454 DFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 454 tl~gH~~~V~sls--~dG~~LaSGs~DGtIrlWD~~ 487 (1149)
.+.. .++|.+++ ++++.++.|-.+|.+-+-+..
T Consensus 275 s~~~-~~pvLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 275 SWKY-PGPVLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred eeec-ccceeeEEecCCCceEEEecccceeeeehhh
Confidence 8764 68899885 468999999999998877643
No 101
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=3.2e-16 Score=162.29 Aligned_cols=245 Identities=16% Similarity=0.168 Sum_probs=170.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECC------CCCCCC-CCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMN------ARLLDS-DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGG 262 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~------~g~~~~-~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~Dg 262 (1149)
++.|.+++|.|.|++-|.||...+.|+-.-. .+---. ..+......-+-|++.|+|++|||+|+ |++||.|+
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 7889999999999999999999999986421 110000 011122233467899999999999999 58999999
Q ss_pred cEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcC----CCCEEEEecCC--ceEE
Q 001123 263 GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH----SRAKVWSAGFL--SFAL 336 (1149)
Q Consensus 263 TIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~----~~~~v~Sasd~--tIrL 336 (1149)
+||+-..+...+......-+ + ..+.+.++.+++-. .+..++|++.+ .|.+
T Consensus 112 ~ik~l~fn~dt~~~~g~dle-----~-------------------nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~ 167 (350)
T KOG0641|consen 112 TIKVLPFNADTCNATGHDLE-----F-------------------NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYI 167 (350)
T ss_pred eEEEEecccccccccCccee-----e-------------------eecCCceeeeEEecCCCcCceEEEecCCCcceEEE
Confidence 99998776533322211100 0 01224455555422 24456666543 3555
Q ss_pred EEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeeccccc
Q 001123 337 WDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFG 416 (1149)
Q Consensus 337 WD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~ 416 (1149)
=|..+|+.++.+++|.
T Consensus 168 tdc~~g~~~~a~sght---------------------------------------------------------------- 183 (350)
T KOG0641|consen 168 TDCGRGQGFHALSGHT---------------------------------------------------------------- 183 (350)
T ss_pred eecCCCCcceeecCCc----------------------------------------------------------------
Confidence 5666666555554432
Q ss_pred CCCCceEEEEEcCCCcEEEEeCCCeEEEEeC-CCCeeEeeec--C-----CccEEEEEe--cCCEEEEeecCcEEEEEeC
Q 001123 417 DDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQY--L-----PFAVQCLCT--FGSQIWVGYMNGIVQVLDL 486 (1149)
Q Consensus 417 ~~~~~V~ava~s~Dg~laSgs~DgtIrlWD~-tG~~l~tl~g--H-----~~~V~sls~--dG~~LaSGs~DGtIrlWD~ 486 (1149)
..|-++-.=.+-++++||.|.|||+||+ -..|+.++.. | .+.|.+++. .|+.|++|-.|..-.++|+
T Consensus 184 ---ghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 184 ---GHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI 260 (350)
T ss_pred ---ccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence 2222221111225789999999999999 5678877643 2 256877776 4999999999999999998
Q ss_pred C-CceeeeeeccCCCeEEEE--ecCCeEEeecCCCceeeeecc
Q 001123 487 E-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 487 ~-G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
. |+.++.+.-|+..|.++. |...|++|+|.|..||+=|+.
T Consensus 261 rg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 261 RGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred eCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 7 688999999999999997 466799999999999999875
No 102
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=4.3e-17 Score=183.98 Aligned_cols=200 Identities=18% Similarity=0.362 Sum_probs=156.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
.++|.||+-+|.|.+|+-|.--|.|-+|.+.+|.+ +..|.+|-.+|+++.|+-||. |+|||.||.|.+|.+
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L--------L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l 152 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL--------LNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLL 152 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccH--------HHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEE
Confidence 46899999999999999999999999999999873 667899999999999999998 899999999999997
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEe
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~ 349 (1149)
.+. + ..+.+. +-+.++.|+
T Consensus 153 ~~l-----v---------------------------------------~a~~~~-----------------~~~p~~~f~ 171 (476)
T KOG0646|consen 153 TDL-----V---------------------------------------SADNDH-----------------SVKPLHIFS 171 (476)
T ss_pred Eee-----c---------------------------------------ccccCC-----------------Cccceeeec
Confidence 210 0 000000 111122222
Q ss_pred cCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcC
Q 001123 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (1149)
Q Consensus 350 ~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~ 429 (1149)
+|...|..+...+
T Consensus 172 -------------------------------------------------------------------~HtlsITDl~ig~ 184 (476)
T KOG0646|consen 172 -------------------------------------------------------------------DHTLSITDLQIGS 184 (476)
T ss_pred -------------------------------------------------------------------cCcceeEEEEecC
Confidence 2222333333322
Q ss_pred ---CCcEEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEec--CCEEEEeecCcEEEEEeCC---C------------
Q 001123 430 ---DGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE---G------------ 488 (1149)
Q Consensus 430 ---Dg~laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~d--G~~LaSGs~DGtIrlWD~~---G------------ 488 (1149)
+++++|+|.|.|||+||+ .|..+.++.- +..+.+++.| ++.++.|+.+|.|.+-++. |
T Consensus 185 Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~ 263 (476)
T KOG0646|consen 185 GGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHE 263 (476)
T ss_pred CCccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccccccc
Confidence 346899999999999999 7888888764 5788888776 7999999999999998843 2
Q ss_pred --ceeeeeeccCC--CeEEEE--ecCCeEEeecCCCceeeeeccC
Q 001123 489 --NLLGGWVAHSS--PVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 489 --~~l~~l~gH~~--~V~sLa--~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
..+..+.||.+ .|++|+ .||+.|+||+.||+|.+||+.+
T Consensus 264 ~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 264 ENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred ccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence 24678999999 999998 5999999999999999999876
No 103
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=6.4e-17 Score=189.72 Aligned_cols=214 Identities=21% Similarity=0.273 Sum_probs=163.9
Q ss_pred CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCC
Q 001123 149 GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSD 228 (1149)
Q Consensus 149 ~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~ 228 (1149)
.+|+|.+||.++.+..+. +.. .| .+-|-|++++ +..+.||+.||.|..+|+.....
T Consensus 237 ~~g~v~iwD~~~~k~~~~-----------------~~~-~h-~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~--- 292 (484)
T KOG0305|consen 237 SDGTVQIWDVKEQKKTRT-----------------LRG-SH-ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH--- 292 (484)
T ss_pred cCCeEEEEehhhcccccc-----------------ccC-Cc-CceeEEEecc--CceEEEecCCCcEEEEEEecchh---
Confidence 488899999987776654 111 13 6789999997 67899999999999999987552
Q ss_pred CCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeecccccccccccccee
Q 001123 229 DGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFS 307 (1149)
Q Consensus 229 ~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~ 307 (1149)
...+++||+.-|..+.+++|+. |+||+.|+.+.|||..+.++.+.+.. |
T Consensus 293 ----~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~-------------------H------- 342 (484)
T KOG0305|consen 293 ----VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTE-------------------H------- 342 (484)
T ss_pred ----hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEec-------------------c-------
Confidence 1224899999999999999997 89999999999999955444443322 2
Q ss_pred eeecCCeEEEEEcC-CCCEEEEec---CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCC
Q 001123 308 SILTSDIKNLLSDH-SRAKVWSAG---FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKD 383 (1149)
Q Consensus 308 ~~~~~dv~~las~~-~~~~v~Sas---d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~ 383 (1149)
...|+++++++ ..+.|++|+ |++|++||+.+|++++...-.+|
T Consensus 343 ---~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQ------------------------------ 389 (484)
T KOG0305|consen 343 ---TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQ------------------------------ 389 (484)
T ss_pred ---ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCc------------------------------
Confidence 25577788766 345777765 67899999999988776543333
Q ss_pred ccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EE--EEeCCCeEEEEeC-CCCeeEeeecCC
Q 001123 384 KAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IW--TGGANGLLLQWDP-NGNRLQDFQYLP 459 (1149)
Q Consensus 384 ~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-la--Sgs~DgtIrlWD~-tG~~l~tl~gH~ 459 (1149)
|..|.+++... |+ .|..++.|.||+. +-+.+..+.+|+
T Consensus 390 --------------------------------------VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~ 431 (484)
T KOG0305|consen 390 --------------------------------------VCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHT 431 (484)
T ss_pred --------------------------------------eeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCc
Confidence 33344555432 43 3556778999999 778999999999
Q ss_pred ccEEEEE--ecCCEEEEeecCcEEEEEeCC
Q 001123 460 FAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 460 ~~V~sls--~dG~~LaSGs~DGtIrlWD~~ 487 (1149)
..|..++ +||..|++|+.|.|+++|++-
T Consensus 432 ~RVl~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 432 SRVLYLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred ceeEEEEECCCCCEEEEecccCcEEecccc
Confidence 9999774 689999999999999999964
No 104
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.74 E-value=4.9e-17 Score=188.60 Aligned_cols=303 Identities=15% Similarity=0.194 Sum_probs=186.6
Q ss_pred CCeEEE--eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCcee-eeecCCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 001123 142 EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKE-SVKGVSSVMCMVGDEASGVVWSGHRDGRIMCW 218 (1149)
Q Consensus 142 ~~~l~a--g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~-s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvW 218 (1149)
..++++ -.||.|.+.|....... . ++ ..|.. ..| .++|..+++-|...+|+|++-|.+||+|
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr-~------------ee-~~lk~~~aH-~nAifDl~wapge~~lVsasGDsT~r~W 127 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFR-L------------EE-RQLKKPLAH-KNAIFDLKWAPGESLLVSASGDSTIRPW 127 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcc-h------------hh-hhhcccccc-cceeEeeccCCCceeEEEccCCceeeee
Confidence 344544 45888999997643211 0 00 11111 245 7899999999977899999999999999
Q ss_pred ECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc--EEEEECCCcEEEEeCCCcce-ee---ecCCCcceeeEEEeee
Q 001123 219 KMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEK-AL---SLKPEERHTAALIVER 292 (1149)
Q Consensus 219 dl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~--L~SGS~DgTIRVWdl~t~~~-~~---~l~~~~~~~~a~~~~~ 292 (1149)
|++++.+ .-...+.||++.|.++||.|+.. +++|+.||.|.|||+.-... .+ .......|..+ .-..
T Consensus 128 dvk~s~l------~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~-ptps 200 (720)
T KOG0321|consen 128 DVKTSRL------VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTA-PTPS 200 (720)
T ss_pred eecccee------ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCC-CCCC
Confidence 9998764 11334789999999999999886 68999999999999853110 00 00000000000 0000
Q ss_pred c--cccccccccccceeeeecCCeEEEEEcCCCCEEEEec--CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccc
Q 001123 293 S--YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (1149)
Q Consensus 293 ~--~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas--d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~ 368 (1149)
+ -...+.-...+++. . +.|..+++ .|...|++++ |++||+||+++..+......-+.-
T Consensus 201 kp~~kr~~k~kA~s~ti--~-ssvTvv~f-kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~-------------- 262 (720)
T KOG0321|consen 201 KPLKKRIRKWKAASNTI--F-SSVTVVLF-KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSD-------------- 262 (720)
T ss_pred chhhccccccccccCce--e-eeeEEEEE-eccceeeeccCCCcceEEEeecccccccccCCCccc--------------
Confidence 0 00000000111111 1 23555655 4456676654 788999999865432211100000
Q ss_pred cccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCC-cEEEEeCCCeEEEEeC
Q 001123 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDP 447 (1149)
Q Consensus 369 ~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg-~laSgs~DgtIrlWD~ 447 (1149)
+ +.... + ....+.++....-| ++.+.+.|++|.+|++
T Consensus 263 ------~-~~t~s--k---------------------------------rs~G~~nL~lDssGt~L~AsCtD~sIy~ynm 300 (720)
T KOG0321|consen 263 ------K-YPTHS--K---------------------------------RSVGQVNLILDSSGTYLFASCTDNSIYFYNM 300 (720)
T ss_pred ------C-ccCcc--c---------------------------------ceeeeEEEEecCCCCeEEEEecCCcEEEEec
Confidence 0 00000 0 00112222222223 4766777999999999
Q ss_pred CC---CeeEeeecCCcc---EE-EEEecCCEEEEeecCcEEEEEeCC--CceeeeeeccCCCeEEEEe---cCCeEEeec
Q 001123 448 NG---NRLQDFQYLPFA---VQ-CLCTFGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAV---GAGYIFTLA 515 (1149)
Q Consensus 448 tG---~~l~tl~gH~~~---V~-sls~dG~~LaSGs~DGtIrlWD~~--G~~l~~l~gH~~~V~sLa~---Dg~~LaSgS 515 (1149)
.+ ..+..+.+|... |. ++++||.+|++|+.|+..++|.+. ......+.||+-.|.++.+ +-.-++|+|
T Consensus 301 ~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcS 380 (720)
T KOG0321|consen 301 RSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCS 380 (720)
T ss_pred cccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeec
Confidence 53 455666665432 22 446799999999999999999987 4567889999999999984 445688889
Q ss_pred CCCceeeeecc
Q 001123 516 NHGGIRGWNVT 526 (1149)
Q Consensus 516 ~DgtIRlWdl~ 526 (1149)
.|.++++|++.
T Consensus 381 dD~~~kiW~l~ 391 (720)
T KOG0321|consen 381 DDFRVKIWRLS 391 (720)
T ss_pred cCcceEEEecc
Confidence 99999999984
No 105
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.74 E-value=3.6e-16 Score=168.55 Aligned_cols=256 Identities=17% Similarity=0.227 Sum_probs=170.0
Q ss_pred CCceEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEE
Q 001123 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNA-RLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIW 267 (1149)
Q Consensus 191 ~~~V~~lafs~-dg~~LaSGS~DGtIRvWdl~~-g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVW 267 (1149)
...|.+|+||| +..+++.||-||+||+|+++. |.. .......|.++|.+++|+.||. +++|+.|+.+|+|
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~-------~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL-------VPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLW 99 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcc-------cchhhhccCCCeEEEEEccCCceEEeeccCCceEEE
Confidence 56889999999 567888999999999999976 221 1234567999999999999997 7899999999999
Q ss_pred eCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCC--CCEEEEec-CCceEEEEcCCccE
Q 001123 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTREL 344 (1149)
Q Consensus 268 dl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~--~~~v~Sas-d~tIrLWD~~TG~~ 344 (1149)
|+++++... ... | ...++.+.+-+. ...|++++ |+|||.||++.-..
T Consensus 100 DL~S~Q~~~-v~~-------------------H----------d~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p 149 (347)
T KOG0647|consen 100 DLASGQVSQ-VAA-------------------H----------DAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP 149 (347)
T ss_pred EccCCCeee-eee-------------------c----------ccceeEEEEecCCCcceeEecccccceeecccCCCCe
Confidence 999875332 111 1 123333333222 23667776 57999999999888
Q ss_pred EEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec----ccccCC--
Q 001123 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK----GGFGDD-- 418 (1149)
Q Consensus 345 L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~----g~~~~~-- 418 (1149)
+.++...+.+. ++....+. ++++.++--..+..+ ..|..+
T Consensus 150 v~t~~LPeRvY---a~Dv~~pm-------------------------------~vVata~r~i~vynL~n~~te~k~~~S 195 (347)
T KOG0647|consen 150 VATLQLPERVY---AADVLYPM-------------------------------AVVATAERHIAVYNLENPPTEFKRIES 195 (347)
T ss_pred eeeeeccceee---ehhccCce-------------------------------eEEEecCCcEEEEEcCCCcchhhhhcC
Confidence 88876555432 11110000 111111111111110 011111
Q ss_pred --CCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CC--CeeEeeecCCc---------cEEEEEec--CCEEEEeecCcEE
Q 001123 419 --NRRTEALTTSIDGM-IWTGGANGLLLQWDP-NG--NRLQDFQYLPF---------AVQCLCTF--GSQIWVGYMNGIV 481 (1149)
Q Consensus 419 --~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG--~~l~tl~gH~~---------~V~sls~d--G~~LaSGs~DGtI 481 (1149)
.-.+.+|+...|.. .+-|+-.|.+-|-.+ .+ +.--+|++|.. +|++|++. -..|++++.||++
T Consensus 196 pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf 275 (347)
T KOG0647|consen 196 PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTF 275 (347)
T ss_pred cccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceE
Confidence 22466788666654 588999999999998 45 33346677762 45566664 5789999999999
Q ss_pred EEEeCC-CceeeeeeccCCCeEEEEe--cCCeEE-eecCC
Q 001123 482 QVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIF-TLANH 517 (1149)
Q Consensus 482 rlWD~~-G~~l~~l~gH~~~V~sLa~--Dg~~La-SgS~D 517 (1149)
..||-+ ...|.+..-|..+|.+-.+ +|++++ ..|+|
T Consensus 276 ~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 276 SFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred EEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 999976 4567777889999998875 777655 45666
No 106
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.73 E-value=1.7e-15 Score=180.31 Aligned_cols=337 Identities=17% Similarity=0.261 Sum_probs=217.6
Q ss_pred CeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001123 143 EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (1149)
Q Consensus 143 ~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~~LaSGS~DGtIRvWdl 220 (1149)
+++.. +++|.+++||+.+++.+-. ..+ .+.|+|+.=+|.-..+|-|..||+|.+.++
T Consensus 173 NKIvvGs~~G~lql~Nvrt~K~v~~---------------------f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNl 231 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRTGKVVYT---------------------FQEFFSRITAIEQSPALDVVAIGLENGTVIIFNL 231 (910)
T ss_pred eeEEEeecCCcEEEEEeccCcEEEE---------------------ecccccceeEeccCCcceEEEEeccCceEEEEEc
Confidence 44444 5688899999998886643 223 578999999999999999999999999999
Q ss_pred CCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc--EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeecccccc
Q 001123 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLR 298 (1149)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~--L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~ 298 (1149)
..+. .+.+|+--.+.|++++|.-||. |+||..-|++-+||++.......+. .
T Consensus 232 K~dk--------il~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~------------------n 285 (910)
T KOG1539|consen 232 KFDK--------ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTR------------------N 285 (910)
T ss_pred ccCc--------EEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeee------------------c
Confidence 8865 3667774469999999999997 7899999999999997543221110 1
Q ss_pred ccccccceeeeecCCeEEEEEcCCCCEEEEe-cCCceEEEEcCCcc----EEEEEecCCceeeEEeec---------cCC
Q 001123 299 SHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRE----LLKVFNIDGQIENRVDMS---------LLP 364 (1149)
Q Consensus 299 ~~~~~~g~~~~~~~dv~~las~~~~~~v~Sa-sd~tIrLWD~~TG~----~L~~l~~~g~~~~~v~~S---------~~~ 364 (1149)
+|. +.+....+-++.-.+.++ .|.+.++|=..+|. +|+.=.+|.+....+.+- ...
T Consensus 286 ah~----------~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~ 355 (910)
T KOG1539|consen 286 AHY----------GSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQ 355 (910)
T ss_pred ccc----------CCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEeccc
Confidence 120 111122222333344443 35667776444332 455445555543333222 122
Q ss_pred Ccccc----------cccee-eEEecC----------CCCccceeeeeecc-c---cceEeecCCcE-EEEee-----cc
Q 001123 365 DFAME----------DEFKT-KIVTSS----------KKDKAQSSFGFFQR-S---RNAIMGAADAV-RRVAA-----KG 413 (1149)
Q Consensus 365 ~~~~~----------~~~~~-~~~s~~----------~k~~~~~si~f~~~-~---~~~i~G~~d~v-~rv~~-----~g 413 (1149)
+.+.. .++.. ...... .+.+.+..++|... . .++++.+.+.. .+.|. .|
T Consensus 356 Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G 435 (910)
T KOG1539|consen 356 DRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSG 435 (910)
T ss_pred CcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccc
Confidence 21110 01000 000000 01112222222211 1 24555555432 23343 12
Q ss_pred c-------ccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEee---ecCCccEEEEEecC--CEEEEeecCc
Q 001123 414 G-------FGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDF---QYLPFAVQCLCTFG--SQIWVGYMNG 479 (1149)
Q Consensus 414 ~-------~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl---~gH~~~V~sls~dG--~~LaSGs~DG 479 (1149)
. |..+...+.+|+.++-|. .+-|++.|+|-++++ .|-....+ ..|..+|..++.|| +.++|++.+|
T Consensus 436 ~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~G 515 (910)
T KOG1539|consen 436 RHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADG 515 (910)
T ss_pred cEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcc
Confidence 2 122335677888999887 568889999999999 68777777 47999999999985 7799999999
Q ss_pred EEEEEeCCCc------------------------------------------eeeeeeccCCCeEEEE--ecCCeEEeec
Q 001123 480 IVQVLDLEGN------------------------------------------LLGGWVAHSSPVIKMA--VGAGYIFTLA 515 (1149)
Q Consensus 480 tIrlWD~~G~------------------------------------------~l~~l~gH~~~V~sLa--~Dg~~LaSgS 515 (1149)
.++.||..++ ..+.|.||++.|+++. +||++|+|++
T Consensus 516 ilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisas 595 (910)
T KOG1539|consen 516 ILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISAS 595 (910)
T ss_pred eEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEee
Confidence 9999995421 1235668999999987 6999999999
Q ss_pred CCCceeeeeccCCCCCchhhh
Q 001123 516 NHGGIRGWNVTSPGPLDSILC 536 (1149)
Q Consensus 516 ~DgtIRlWdl~sp~pld~~i~ 536 (1149)
.|++||+||+-+..-+|.++-
T Consensus 596 mD~tIr~wDlpt~~lID~~~v 616 (910)
T KOG1539|consen 596 MDSTIRTWDLPTGTLIDGLLV 616 (910)
T ss_pred cCCcEEEEeccCcceeeeEec
Confidence 999999999988777776544
No 107
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=8.2e-16 Score=166.55 Aligned_cols=99 Identities=17% Similarity=0.198 Sum_probs=78.8
Q ss_pred CCeEEEeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001123 142 EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (1149)
Q Consensus 142 ~~~l~ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~ 221 (1149)
...|.++-||++|+++++.-..... + .+ ..|+++++|-++ ..+++|+-||.||..|++
T Consensus 26 ~~LLvssWDgslrlYdv~~~~l~~~-----------------~---~~-~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 26 SDLLVSSWDGSLRLYDVPANSLKLK-----------------F---KH-GAPLLDCAFADE-STIVTGGLDGQVRRYDLN 83 (323)
T ss_pred CcEEEEeccCcEEEEeccchhhhhh-----------------e---ec-CCceeeeeccCC-ceEEEeccCceEEEEEec
Confidence 4445557799999999875432211 2 23 679999999774 578999999999999999
Q ss_pred CCCCCCCCCccceEEeecCCCCEEEEEEeCC-CcEEEEECCCcEEEEeCCC
Q 001123 222 ARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDLWSGSEGGGIKIWPWEA 271 (1149)
Q Consensus 222 ~g~~~~~~~~~~~~~l~GH~~~VtsVafSpd-G~L~SGS~DgTIRVWdl~t 271 (1149)
++. ...+..|.++|.+|.+++. |.++|||+|++||+||...
T Consensus 84 ~~~---------~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 84 TGN---------EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN 125 (323)
T ss_pred CCc---------ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc
Confidence 865 4556779999999999964 4589999999999999864
No 108
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.73 E-value=2.1e-16 Score=179.43 Aligned_cols=289 Identities=17% Similarity=0.190 Sum_probs=193.6
Q ss_pred cCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEe
Q 001123 190 GVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (1149)
Q Consensus 190 G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWd 268 (1149)
|+..|.+|+++|.|.+++|||.|.+|++||+.+-. .+.+.|+.+.--.+| .|+++.||+.|. |+..|....+||.|
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMd-as~~~fr~l~P~E~h--~i~sl~ys~Tg~~iLvvsg~aqakl~D 242 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMD-ASMRSFRQLQPCETH--QINSLQYSVTGDQILVVSGSAQAKLLD 242 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEeccccc-ccchhhhccCccccc--ccceeeecCCCCeEEEEecCcceeEEc
Confidence 38889999999999999999999999999997632 122344444434455 899999999986 55555557899999
Q ss_pred CCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCC--CEEEEecCCceEEEEcCC-ccEE
Q 001123 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR--AKVWSAGFLSFALWDART-RELL 345 (1149)
Q Consensus 269 l~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~--~~v~Sasd~tIrLWD~~T-G~~L 345 (1149)
-+..+..-...++ ..+. .....++|. ..+.|.++.+.. ..+.++.|+|+|+||+.. .+.+
T Consensus 243 RdG~~~~e~~KGD-QYI~------Dm~nTKGHi----------a~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~ 305 (641)
T KOG0772|consen 243 RDGFEIVEFSKGD-QYIR------DMYNTKGHI----------AELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL 305 (641)
T ss_pred cCCceeeeeeccc-hhhh------hhhccCCce----------eeeeccccccCcccceEEecCCCcEEEEecCCchhhe
Confidence 7654322211111 1111 011123332 234444444432 234455578999999965 3455
Q ss_pred EEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccc---------c
Q 001123 346 KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGF---------G 416 (1149)
Q Consensus 346 ~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~---------~ 416 (1149)
++++.... .++.-.+++-+|.+++..+++|..||-+.+|..+.. .
T Consensus 306 qVik~k~~--------------------------~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~ 359 (641)
T KOG0772|consen 306 QVIKTKPA--------------------------GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKD 359 (641)
T ss_pred eEEeeccC--------------------------CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeee
Confidence 55543221 112233445678888888889999998888874321 2
Q ss_pred CCCC--ceEEEEEcCCCc-EEEEeCCCeEEEEeC-C-CCeeEeeecCCc----cEEEEEecCCEEEEee------cCcEE
Q 001123 417 DDNR--RTEALTTSIDGM-IWTGGANGLLLQWDP-N-GNRLQDFQYLPF----AVQCLCTFGSQIWVGY------MNGIV 481 (1149)
Q Consensus 417 ~~~~--~V~ava~s~Dg~-laSgs~DgtIrlWD~-t-G~~l~tl~gH~~----~V~sls~dG~~LaSGs------~DGtI 481 (1149)
.|.. .|.+|+||+||+ |+|-+.|+++|+||+ + -+++.+..+-.. .=.|++++.+.|++|. ..|++
T Consensus 360 AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L 439 (641)
T KOG0772|consen 360 AHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTL 439 (641)
T ss_pred ccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceE
Confidence 3433 899999999997 889999999999999 3 478877666332 2236678888888886 45789
Q ss_pred EEEeCC-CceeeeeeccCCCeEEEEecCC--eEEeecCCCceeeee
Q 001123 482 QVLDLE-GNLLGGWVAHSSPVIKMAVGAG--YIFTLANHGGIRGWN 524 (1149)
Q Consensus 482 rlWD~~-G~~l~~l~gH~~~V~sLa~Dg~--~LaSgS~DgtIRlWd 524 (1149)
.++|.. -..+..+.--+..|..+++.++ .|+.++.||+++++-
T Consensus 440 ~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 440 FFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred EEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 999954 3445554444667777777664 588889999999874
No 109
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=1.2e-16 Score=191.43 Aligned_cols=213 Identities=21% Similarity=0.361 Sum_probs=149.8
Q ss_pred Eee-cCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceee-ec-------------------CC-C-----------
Q 001123 236 SWQ-AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKAL-SL-------------------KP-E----------- 281 (1149)
Q Consensus 236 ~l~-GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~-~l-------------------~~-~----------- 281 (1149)
.++ +|.|+|++|.||+||+ |||||+|+.||||.+...+... .. .. +
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 355 8999999999999998 8999999999999985411100 00 00 0
Q ss_pred -cceeeEEEe--------eeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEecCC
Q 001123 282 -ERHTAALIV--------ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDG 352 (1149)
Q Consensus 282 -~~~~~a~~~--------~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~~~g 352 (1149)
.....++.+ +..+...++ +.++|..+.++.++-+|-++-|.|+|||++.+.+||++|.+
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~G----------Ht~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~H-- 408 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKG----------HTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSH-- 408 (712)
T ss_pred cccCCccccCCCccccccccchhhhhc----------cchhheecccccCCeeEeccccccEEeecCCCcceeeEEec--
Confidence 000000000 000011122 34788999998887777667799999999999999999853
Q ss_pred ceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcC--C
Q 001123 353 QIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI--D 430 (1149)
Q Consensus 353 ~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~--D 430 (1149)
...|+||+|+| |
T Consensus 409 ------------------------------------------------------------------ndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 409 ------------------------------------------------------------------NDFVTCVAFNPVDD 422 (712)
T ss_pred ------------------------------------------------------------------CCeeEEEEecccCC
Confidence 23356677766 4
Q ss_pred CcEEEEeCCCeEEEEeCCCCeeEeeecCCccEEEEE--ecCCEEEEeecCcEEEEEeCCCc-eeeeee---------ccC
Q 001123 431 GMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEGN-LLGGWV---------AHS 498 (1149)
Q Consensus 431 g~laSgs~DgtIrlWD~tG~~l~tl~gH~~~V~sls--~dG~~LaSGs~DGtIrlWD~~G~-~l~~l~---------gH~ 498 (1149)
.+++|||-||.||||++....+-....-..-|++++ +||++.+.|+.+|..+++++.|. +...+. .|.
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~ 502 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK 502 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc
Confidence 569999999999999996655555544447888775 58999999999999999998863 322222 133
Q ss_pred CCeEEEEe---cCCeEEeecCCCceeeeeccC
Q 001123 499 SPVIKMAV---GAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 499 ~~V~sLa~---Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
.|+++.+ +...|+..|.|..|||.|+..
T Consensus 503 -rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~ 533 (712)
T KOG0283|consen 503 -RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD 533 (712)
T ss_pred -eeeeeEecCCCCCeEEEecCCCceEEEeccc
Confidence 7999984 455677779999999999843
No 110
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=8.7e-16 Score=165.90 Aligned_cols=253 Identities=14% Similarity=0.206 Sum_probs=166.8
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeC--CCc-EEEEECCCcEEEE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS--YGD-LWSGSEGGGIKIW 267 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSp--dG~-L~SGS~DgTIRVW 267 (1149)
..-|.|+.|++-|+++||+|.|++|+|||.+.+. ....+...|+.|.+.|..|++.+ .|+ ++++|.|+||+||
T Consensus 13 ~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s----~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 13 KDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS----GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cceeeeeeecccCceeeeccCCCcEEEEeccCCC----CceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 5678999999999999999999999999976533 34555678999999999999975 477 7899999999999
Q ss_pred eCCCcceeeecCCCc-ceeeEEEeeeccccccccccccceeeeecCCeEEEEEcC--CCCEEEEec-CCceEEEEcCCcc
Q 001123 268 PWEAIEKALSLKPEE-RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH--SRAKVWSAG-FLSFALWDARTRE 343 (1149)
Q Consensus 268 dl~t~~~~~~l~~~~-~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~--~~~~v~Sas-d~tIrLWD~~TG~ 343 (1149)
.=+. . .+..++ .+...- ...+- .+.|..+.|++ -|-++++++ |+++||+++-.--
T Consensus 89 EE~~--~--~~~~~~~~Wv~~t----tl~Ds-------------rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~ 147 (361)
T KOG2445|consen 89 EEQE--K--SEEAHGRRWVRRT----TLVDS-------------RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM 147 (361)
T ss_pred eecc--c--ccccccceeEEEE----EeecC-------------CcceeEEEecchhcceEEEEeccCcEEEEEecCCcc
Confidence 8531 1 111111 111100 00111 13344455544 345666654 7889999864211
Q ss_pred EEEE--EecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCc
Q 001123 344 LLKV--FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRR 421 (1149)
Q Consensus 344 ~L~~--l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~ 421 (1149)
-|.. |...-+. +..+ ...+...
T Consensus 148 nLs~W~Lq~Ei~~---------------------~~~p-----------------------------------p~~~~~~ 171 (361)
T KOG2445|consen 148 NLSQWTLQHEIQN---------------------VIDP-----------------------------------PGKNKQP 171 (361)
T ss_pred ccccchhhhhhhh---------------------ccCC-----------------------------------cccccCc
Confidence 1110 0000000 0000 0111222
Q ss_pred eEEEEEcCCC----cEEEEeCC-----CeEEEEeC--CC-C--eeEeeecCCccEEEEEec---C---CEEEEeecCcEE
Q 001123 422 TEALTTSIDG----MIWTGGAN-----GLLLQWDP--NG-N--RLQDFQYLPFAVQCLCTF---G---SQIWVGYMNGIV 481 (1149)
Q Consensus 422 V~ava~s~Dg----~laSgs~D-----gtIrlWD~--tG-~--~l~tl~gH~~~V~sls~d---G---~~LaSGs~DGtI 481 (1149)
..||.+++.. .||.|+.+ +.++||.- +| + .+.+|.+|+++|++|++. | ..||+|+.|| |
T Consensus 172 ~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v 250 (361)
T KOG2445|consen 172 CFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-V 250 (361)
T ss_pred ceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-E
Confidence 3344444332 35666554 47999988 35 3 356788999999999762 5 5899999999 9
Q ss_pred EEEeCCC---------------------ceeeeeeccCCCeEEEEe--cCCeEEeecCCCceeeeec
Q 001123 482 QVLDLEG---------------------NLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 482 rlWD~~G---------------------~~l~~l~gH~~~V~sLa~--Dg~~LaSgS~DgtIRlWdl 525 (1149)
+||.+++ +.+..+.+|.+.|+.+.. -|..|+|.|.||+||+|..
T Consensus 251 ~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 251 RIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred EEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 9999652 135678899999999985 7899999999999999974
No 111
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.73 E-value=2.5e-16 Score=166.85 Aligned_cols=238 Identities=15% Similarity=0.130 Sum_probs=161.4
Q ss_pred EEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCC
Q 001123 235 LSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSD 313 (1149)
Q Consensus 235 ~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~d 313 (1149)
..++||.+.|.+|+|..+|. |+|||.|+++++|+++....... ...++|. +.
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~-----------------~~~~gh~----------~s 66 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE-----------------LVYRGHT----------DS 66 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh-----------------hcccCCC----------cc
Confidence 34689999999999999997 99999999999999975422111 1122332 33
Q ss_pred eEEEEEcCCC-CEEEE-ecCCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeee
Q 001123 314 IKNLLSDHSR-AKVWS-AGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGF 391 (1149)
Q Consensus 314 v~~las~~~~-~~v~S-asd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f 391 (1149)
+..++..+.. .++++ ++|++|++||.+++++.......+.-+ .+.+
T Consensus 67 vdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni--------------------------------~i~w 114 (313)
T KOG1407|consen 67 VDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI--------------------------------NITW 114 (313)
T ss_pred hhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce--------------------------------EEEE
Confidence 4444544432 24444 457899999999999987765433211 1223
Q ss_pred eccccceEeecCCcE-EEEeecc--cc--cCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEE
Q 001123 392 FQRSRNAIMGAADAV-RRVAAKG--GF--GDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQC 464 (1149)
Q Consensus 392 ~~~~~~~i~G~~d~v-~rv~~~g--~~--~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~s 464 (1149)
+|++..++.+..|-. .-+..+. .. ......+.-+.++.++. +......|+|.|-.- .=+.+++++.|+....|
T Consensus 115 sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCic 194 (313)
T KOG1407|consen 115 SPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCIC 194 (313)
T ss_pred cCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEE
Confidence 333343443333322 1111100 00 01112344455555554 444556799999988 66999999999988778
Q ss_pred EEe--cCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEEEEe--cCCeEEeecCCCceeeeeccCCCCC
Q 001123 465 LCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPL 531 (1149)
Q Consensus 465 ls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa~--Dg~~LaSgS~DgtIRlWdl~sp~pl 531 (1149)
|.+ +|+++|+|++|..+.|||++ =-|++.+.-|.-+|..|++ ||++|||||.|..|-|=++.+++.+
T Consensus 195 I~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~ 266 (313)
T KOG1407|consen 195 IEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRV 266 (313)
T ss_pred EEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeE
Confidence 865 69999999999999999986 4678899999999999985 9999999999999977666655443
No 112
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.3e-15 Score=163.84 Aligned_cols=269 Identities=13% Similarity=0.129 Sum_probs=182.2
Q ss_pred cceeEEEEEee--CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCCEE
Q 001123 131 IGCFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVV 206 (1149)
Q Consensus 131 ~~~~l~~l~~~--~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~~L 206 (1149)
.+..+.+|..+ +..+.+ +.|.+++|+|..+|...++ ++- .-.|-.+.|-.....+
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~t---------------------i~skkyG~~~~~Fth~~~~~ 71 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKT---------------------INSKKYGVDLACFTHHSNTV 71 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeE---------------------eecccccccEEEEecCCceE
Confidence 45566777777 444555 4577999999999888765 111 2245566666666666
Q ss_pred EEEeC--CCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcc
Q 001123 207 WSGHR--DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEER 283 (1149)
Q Consensus 207 aSGS~--DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~ 283 (1149)
..+|. |.+||.-++.+.++ ++-|.||+..|++++.+|-+. ++|+|.|+|||+||+....+...+...
T Consensus 72 i~sStk~d~tIryLsl~dNky--------lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-- 141 (311)
T KOG1446|consen 72 IHSSTKEDDTIRYLSLHDNKY--------LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS-- 141 (311)
T ss_pred EEccCCCCCceEEEEeecCce--------EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC--
Confidence 66666 99999999988653 788999999999999999776 899999999999999764433222111
Q ss_pred eeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCC-ceEEEEcCCc--cEEEEEecCCceeeEEee
Q 001123 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL-SFALWDARTR--ELLKVFNIDGQIENRVDM 360 (1149)
Q Consensus 284 ~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~-tIrLWD~~TG--~~L~~l~~~g~~~~~v~~ 360 (1149)
.--+.|+++.|-..+.+... .|+|+|++.- ..-.+|...-
T Consensus 142 -----------------------------~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~-------- 184 (311)
T KOG1446|consen 142 -----------------------------GRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD-------- 184 (311)
T ss_pred -----------------------------CCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC--------
Confidence 11234567766665555543 7999998752 2222222110
Q ss_pred ccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEee--cc----cccCCCCc---eEEEEEcCCC
Q 001123 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRR---TEALTTSIDG 431 (1149)
Q Consensus 361 S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~--~g----~~~~~~~~---V~ava~s~Dg 431 (1149)
.....-..+.|+++|+.++.....+...+-+ .| .|.++... .....++||+
T Consensus 185 --------------------~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds 244 (311)
T KOG1446|consen 185 --------------------NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS 244 (311)
T ss_pred --------------------CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC
Confidence 0011122456777776665555444333321 22 33333221 1345589999
Q ss_pred c-EEEEeCCCeEEEEeC-CCCeeEeeec-CCccEEEEEecCCEEEEeecCcEEEEEeCC
Q 001123 432 M-IWTGGANGLLLQWDP-NGNRLQDFQY-LPFAVQCLCTFGSQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 432 ~-laSgs~DgtIrlWD~-tG~~l~tl~g-H~~~V~sls~dG~~LaSGs~DGtIrlWD~~ 487 (1149)
+ +++|+.||+|.+|++ +|..+..+.+ +..++.++.++.++..-.+++..+-+|=.+
T Consensus 245 ~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 245 KFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPD 303 (311)
T ss_pred cEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEecc
Confidence 8 779999999999999 8999999988 788999999998888888888899999643
No 113
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.72 E-value=6e-16 Score=181.06 Aligned_cols=317 Identities=16% Similarity=0.155 Sum_probs=191.8
Q ss_pred eec-CCceEEEEEcCCCC---EEEEEeCCCeEEEEECCCCCCCC-------------CCCccce---E-------EeecC
Q 001123 188 VKG-VSSVMCMVGDEASG---VVWSGHRDGRIMCWKMNARLLDS-------------DDGFGEV---L-------SWQAH 240 (1149)
Q Consensus 188 ~~G-~~~V~~lafs~dg~---~LaSGS~DGtIRvWdl~~g~~~~-------------~~~~~~~---~-------~l~GH 240 (1149)
+.| +.+|.+|+|...++ +|||+|+|..||+|.+.-+...+ ...+... . .+.||
T Consensus 187 l~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH 266 (764)
T KOG1063|consen 187 LEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH 266 (764)
T ss_pred eeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc
Confidence 456 89999999987655 99999999999999975332000 0111111 1 13599
Q ss_pred CCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEE
Q 001123 241 RGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS 319 (1149)
Q Consensus 241 ~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las 319 (1149)
.+.|.++.++|.+. |+|+|.|+++-+|......-. +...+ |-+. -+ +...|.. -+ .+
T Consensus 267 eDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGi--------Wv~~v---RlGe--~g-g~a~GF~-------g~-lw 324 (764)
T KOG1063|consen 267 EDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGI--------WVDVV---RLGE--VG-GSAGGFW-------GG-LW 324 (764)
T ss_pred ccceEEEEEccchhhheecccCcceEEEecCCccce--------EEEEE---Eeec--cc-cccccee-------eE-EE
Confidence 99999999999994 999999999999987542111 11111 0000 00 0111111 11 22
Q ss_pred cCCCCEEEE-ecCCceEEEEcCC-cc--EEEEEecCCceeeEEeeccCCCcccc--ccceeeEEecC-------------
Q 001123 320 DHSRAKVWS-AGFLSFALWDART-RE--LLKVFNIDGQIENRVDMSLLPDFAME--DEFKTKIVTSS------------- 380 (1149)
Q Consensus 320 ~~~~~~v~S-asd~tIrLWD~~T-G~--~L~~l~~~g~~~~~v~~S~~~~~~~~--~~~~~~~~s~~------------- 380 (1149)
++++..+.+ +-.+..++|-.+. +. .+...++|-.-+..+++.+.++.... .+.+.++++.-
T Consensus 325 ~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQ 404 (764)
T KOG1063|consen 325 SPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQ 404 (764)
T ss_pred cCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccc
Confidence 333333333 3346678887222 11 22334455444555666655443321 22222222211
Q ss_pred CCCccceeeeeeccccceEeecCCcEEEEee-------------------------------------------------
Q 001123 381 KKDKAQSSFGFFQRSRNAIMGAADAVRRVAA------------------------------------------------- 411 (1149)
Q Consensus 381 ~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~------------------------------------------------- 411 (1149)
-|.-...++.|-+...+-+.|+...|.|+-.
T Consensus 405 iHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~ 484 (764)
T KOG1063|consen 405 IHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGE 484 (764)
T ss_pred cccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccc
Confidence 0111111222222111222232223333211
Q ss_pred ---------------------------------cccccCCCCceEEEEEcCCCc-EEEEeCC-----CeEEEEeCC-CCe
Q 001123 412 ---------------------------------KGGFGDDNRRTEALTTSIDGM-IWTGGAN-----GLLLQWDPN-GNR 451 (1149)
Q Consensus 412 ---------------------------------~g~~~~~~~~V~ava~s~Dg~-laSgs~D-----gtIrlWD~t-G~~ 451 (1149)
...+-+|...|.+++.+|+|. +||++.. ..|+||+.. =..
T Consensus 485 ~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~ 564 (764)
T KOG1063|consen 485 AAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ 564 (764)
T ss_pred cceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh
Confidence 012345667889999999998 5666653 369999994 466
Q ss_pred eEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-C----ceeeeeeccCCCeEEEE--ecCCeEEeecCCCceee
Q 001123 452 LQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-G----NLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRG 522 (1149)
Q Consensus 452 l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G----~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRl 522 (1149)
++.+.+|.-.|+-|.+ ||++|++.|.|.++.||... + ......+.|+-.|++.. +|+.+++|+|.|++|++
T Consensus 565 ~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkV 644 (764)
T KOG1063|consen 565 VQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKV 644 (764)
T ss_pred hheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEE
Confidence 7789999999998855 89999999999999999952 2 22455889999999876 79999999999999999
Q ss_pred eecc
Q 001123 523 WNVT 526 (1149)
Q Consensus 523 Wdl~ 526 (1149)
|...
T Consensus 645 W~~~ 648 (764)
T KOG1063|consen 645 WEEP 648 (764)
T ss_pred Eecc
Confidence 9864
No 114
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.9e-16 Score=169.74 Aligned_cols=287 Identities=16% Similarity=0.129 Sum_probs=171.7
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceE-EeecCCCCEEEEEEeCCCc--EEEEECCCcEEEE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVL-SWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIW 267 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~-~l~GH~~~VtsVafSpdG~--L~SGS~DgTIRVW 267 (1149)
...|.|++|+.||+.|||.+.|++||+|++..=.. +.-+.++ .+. -+.-+.|+|+||.+ +++.-...+++++
T Consensus 86 ~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~---~eHr~~R~nve--~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 86 KKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN---KEHRCIRQNVE--YDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred CCceeeeEEcCCCceeEEEeCCceEEEEecchhhh---hhhhHhhcccc--CCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 78999999999999999999999999999864110 0000011 111 13457899999987 5677788899999
Q ss_pred eCCCcc---eeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCcc
Q 001123 268 PWEAIE---KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE 343 (1149)
Q Consensus 268 dl~t~~---~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~ 343 (1149)
.+.-.+ ....+.... +.. -.+.|. .++..+-...++..+.|++ |.+|-|||++ |+
T Consensus 161 k~~K~~dG~~~~~~v~~D-~~~---------f~~kh~----------v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq 219 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHID-NLE---------FERKHQ----------VDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ 219 (420)
T ss_pred EeeecccCCCCccccccc-ccc---------cchhcc----------cceEEEeecCCceEEEEecCCCcEEEEecC-Cc
Confidence 874311 111111000 000 001111 2233344444555666766 4569999999 99
Q ss_pred EEEEEecCCceeeEEeeccCCCcccccc--ceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCc
Q 001123 344 LLKVFNIDGQIENRVDMSLLPDFAMEDE--FKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRR 421 (1149)
Q Consensus 344 ~L~~l~~~g~~~~~v~~S~~~~~~~~~~--~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~ 421 (1149)
.|.+....-.-..-.+.||.+...+... ..+++|.. -|..+ |....+.|+ -.+.+|...
T Consensus 220 ~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~----------~f~kd------G~fqev~rv---f~LkGH~sa 280 (420)
T KOG2096|consen 220 LLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEP----------IFTKD------GTFQEVKRV---FSLKGHQSA 280 (420)
T ss_pred eeeeeccccccccceeeCCCCcEEEEecCCCCceEEEE----------EeccC------cchhhhhhh---heeccchhh
Confidence 8887643211111123344444332210 01111110 00000 000011111 136788899
Q ss_pred eEEEEEcCCCc-EEEEeCCCeEEEEeCC-----CC---eeEeeec-----CCccEE-EEEecCCEEEEeecCcEEEEEeC
Q 001123 422 TEALTTSIDGM-IWTGGANGLLLQWDPN-----GN---RLQDFQY-----LPFAVQ-CLCTFGSQIWVGYMNGIVQVLDL 486 (1149)
Q Consensus 422 V~ava~s~Dg~-laSgs~DgtIrlWD~t-----G~---~l~tl~g-----H~~~V~-sls~dG~~LaSGs~DGtIrlWD~ 486 (1149)
|.+++|+++.. +++.|.||++||||.+ |+ .+++... ...++. ++++.|+.||.+. ..+|+++..
T Consensus 281 V~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~s 359 (420)
T KOG2096|consen 281 VLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFAS 359 (420)
T ss_pred eeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEc
Confidence 99999999975 9999999999999983 33 2333211 122343 6788999888764 457999997
Q ss_pred C-Cceeeee-eccCCCeEEEE--ecCCeEEeecCCCceeeee
Q 001123 487 E-GNLLGGW-VAHSSPVIKMA--VGAGYIFTLANHGGIRGWN 524 (1149)
Q Consensus 487 ~-G~~l~~l-~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWd 524 (1149)
+ |+..-.+ ..|...|.+|+ ++|++++|++ |.-+|+..
T Consensus 360 e~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 360 EDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred ccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 6 7655444 37999999998 5999999986 66777754
No 115
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=3.2e-15 Score=175.09 Aligned_cols=279 Identities=16% Similarity=0.218 Sum_probs=207.2
Q ss_pred eEEEEEee--CCeEEEe-CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec--CCceEEEEEcCCCCEEEE
Q 001123 134 FLRTIVCT--EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG--VSSVMCMVGDEASGVVWS 208 (1149)
Q Consensus 134 ~l~~l~~~--~~~l~ag-~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G--~~~V~~lafs~dg~~LaS 208 (1149)
.++++|.. .++|.+| .||.|-+||+...+.... .++| .+.|-.|+|+ +|..|+|
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--------------------vi~g~~drsIE~L~W~-e~~RLFS 85 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--------------------VIHGPEDRSIESLAWA-EGGRLFS 85 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--------------------EEecCCCCceeeEEEc-cCCeEEe
Confidence 45566665 6777666 499999999987665432 2444 6789999999 5678999
Q ss_pred EeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeE
Q 001123 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (1149)
Q Consensus 209 GS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a 287 (1149)
.+-+|+|.-||+.++. .......-.++|++|+.+|.++ |+-|++||.+...+...+.-.. ..
T Consensus 86 ~g~sg~i~EwDl~~lk--------~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~--------~r- 148 (691)
T KOG2048|consen 86 SGLSGSITEWDLHTLK--------QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITY--------KR- 148 (691)
T ss_pred ecCCceEEEEecccCc--------eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEE--------Ee-
Confidence 9999999999998754 3444555678999999999887 7788899977777765432111 00
Q ss_pred EEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecC-CceEEEEcCCccEEEEEecCCceeeEEeeccCCCc
Q 001123 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (1149)
Q Consensus 288 ~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd-~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~ 366 (1149)
.+ ....+.+.++.+.+++.++++|+. +.|++||+.+|..++.... ++
T Consensus 149 -----~l-------------~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~--~~------------ 196 (691)
T KOG2048|consen 149 -----SL-------------MRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITM--QL------------ 196 (691)
T ss_pred -----ec-------------ccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeee--cc------------
Confidence 00 012366788899999988888764 5599999999876662211 10
Q ss_pred cccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCcEEEEeCCCeEEEEe
Q 001123 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWD 446 (1149)
Q Consensus 367 ~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~laSgs~DgtIrlWD 446 (1149)
...++ +...-|.+|.+-.|++|++|.+-|+|++||
T Consensus 197 -----------d~l~k----------------------------------~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd 231 (691)
T KOG2048|consen 197 -----------DRLSK----------------------------------REPTIVWSVLFLRDSTIASGDSAGTVTFWD 231 (691)
T ss_pred -----------ccccc----------------------------------CCceEEEEEEEeecCcEEEecCCceEEEEc
Confidence 00110 011124466777889999999999999999
Q ss_pred C-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCCCc-----eeeeeeccCCCeEEEEecCCeEEeecCCC
Q 001123 447 P-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGN-----LLGGWVAHSSPVIKMAVGAGYIFTLANHG 518 (1149)
Q Consensus 447 ~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~G~-----~l~~l~gH~~~V~sLa~Dg~~LaSgS~Dg 518 (1149)
. .|..++.+..|...|.|++. ++.++.+++.|+.|-.+-.++. .-....+|...|.+++.-+..++||+.|.
T Consensus 232 ~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~ 311 (691)
T KOG2048|consen 232 SIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDF 311 (691)
T ss_pred ccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceee
Confidence 9 89999999999999999976 4789999999999999987643 23455689999999997666999999999
Q ss_pred ceeeeeccC
Q 001123 519 GIRGWNVTS 527 (1149)
Q Consensus 519 tIRlWdl~s 527 (1149)
++.+=....
T Consensus 312 ~l~i~~s~~ 320 (691)
T KOG2048|consen 312 TLAICSSRE 320 (691)
T ss_pred EEEEccccc
Confidence 998866543
No 116
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.71 E-value=2.7e-16 Score=177.55 Aligned_cols=249 Identities=17% Similarity=0.160 Sum_probs=175.0
Q ss_pred CCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCCCCC--CCccceEEeecCCCCEEEEEEeCCC--cEEEEECCCcEE
Q 001123 191 VSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSD--DGFGEVLSWQAHRGPVLSLCISSYG--DLWSGSEGGGIK 265 (1149)
Q Consensus 191 ~~~V~~lafs~dg-~~LaSGS~DGtIRvWdl~~g~~~~~--~~~~~~~~l~GH~~~VtsVafSpdG--~L~SGS~DgTIR 265 (1149)
.+.|+-+..=|+. .+|||++..+.|-|||...-..... ..+.+-.+|.||++.=++|+|++.. .|+|||.|++|+
T Consensus 124 ~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~ 203 (422)
T KOG0264|consen 124 DGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTIC 203 (422)
T ss_pred CccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEE
Confidence 4567777777765 6788999999999999865331110 0334456899999877889999864 599999999999
Q ss_pred EEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCC-CEEEEecC-CceEEEEcCCcc
Q 001123 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAGF-LSFALWDARTRE 343 (1149)
Q Consensus 266 VWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~-~~v~Sasd-~tIrLWD~~TG~ 343 (1149)
+||+...... ...+.. .....+|. .-|..+++..-. ....|+++ +.+.|||+++++
T Consensus 204 lwdi~~~~~~------~~~~~p------~~~~~~h~----------~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~ 261 (422)
T KOG0264|consen 204 LWDINAESKE------DKVVDP------KTIFSGHE----------DVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT 261 (422)
T ss_pred EEeccccccC------Cccccc------eEEeecCC----------cceehhhccccchhhheeecCCCeEEEEEcCCCC
Confidence 9999763321 000000 00111222 223333433322 34455555 568999998631
Q ss_pred EEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceE
Q 001123 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (1149)
Q Consensus 344 ~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ 423 (1149)
.+ . . .....|...+.
T Consensus 262 -~~---~-----------------------------~--------------------------------~~~~ah~~~vn 276 (422)
T KOG0264|consen 262 -SK---P-----------------------------S--------------------------------HSVKAHSAEVN 276 (422)
T ss_pred -CC---C-----------------------------c--------------------------------ccccccCCcee
Confidence 00 0 0 00234667788
Q ss_pred EEEEcCCC-c-EEEEeCCCeEEEEeC-C-CCeeEeeecCCccEEEEEec---CCEEEEeecCcEEEEEeCC--Cc-----
Q 001123 424 ALTTSIDG-M-IWTGGANGLLLQWDP-N-GNRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE--GN----- 489 (1149)
Q Consensus 424 ava~s~Dg-~-laSgs~DgtIrlWD~-t-G~~l~tl~gH~~~V~sls~d---G~~LaSGs~DGtIrlWD~~--G~----- 489 (1149)
+++|+|-+ . ||+||+|++|.|||+ + .+++.++.+|...|.+|.++ -+.|||++.|+.+.|||++ |+
T Consensus 277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e 356 (422)
T KOG0264|consen 277 CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE 356 (422)
T ss_pred EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence 88888753 3 789999999999999 4 58999999999999999764 5899999999999999975 32
Q ss_pred --------eeeeeeccCCCeEEEEe---cCCeEEeecCCCceeeeecc
Q 001123 490 --------LLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 490 --------~l~~l~gH~~~V~sLa~---Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
++..--||++.|..+.+ .+-.|+|++.|+.+.||+..
T Consensus 357 da~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 357 DAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred hhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 34566799999999985 55679999999999999865
No 117
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.71 E-value=1.1e-16 Score=172.13 Aligned_cols=250 Identities=16% Similarity=0.178 Sum_probs=171.3
Q ss_pred ceEEeecCCCCEEEEEEeCCCcE-EEEECCCcEEEEeCCCcc-ee--e-ecCCCcceeeEEEeeecccccccccccccee
Q 001123 233 EVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWPWEAIE-KA--L-SLKPEERHTAALIVERSYIDLRSHLSVNGFS 307 (1149)
Q Consensus 233 ~~~~l~GH~~~VtsVafSpdG~L-~SGS~DgTIRVWdl~t~~-~~--~-~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~ 307 (1149)
+...+..|++++.+.+|||||.| ++||.|..|||.|++... +. . ....+. .++.++-.+.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~---------------qa~hPvIRTl 168 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDT---------------QARHPVIRTL 168 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCc---------------ccCCceEeeh
Confidence 35567889999999999999994 799999999999986411 00 0 000000 0011111111
Q ss_pred eeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccc
Q 001123 308 SILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQ 386 (1149)
Q Consensus 308 ~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~ 386 (1149)
.-+..+|.++.+-+....++|++ |++|+++|...-.. + ++
T Consensus 169 YDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~sa------------------------------------K--rA- 209 (430)
T KOG0640|consen 169 YDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSA------------------------------------K--RA- 209 (430)
T ss_pred hhccCcccceeecchhheEEeccCCCeEEEEecccHHH------------------------------------H--HH-
Confidence 12337789999988888888876 67899999642100 0 00
Q ss_pred eeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEee---ecCCcc
Q 001123 387 SSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDF---QYLPFA 461 (1149)
Q Consensus 387 ~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl---~gH~~~ 461 (1149)
+. ...+...|.++.|.|.|. |+.|..--++++||+ +-+|.-.- .+|+..
T Consensus 210 --~K------------------------~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 210 --FK------------------------VFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA 263 (430)
T ss_pred --HH------------------------HhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence 00 112345677888999987 667777789999999 66775443 358899
Q ss_pred EEEEEe--cCCEEEEeecCcEEEEEe-CCCceeeeee-ccCC-CeEEEE--ecCCeEEeecCCCceeeeeccCCCCCchh
Q 001123 462 VQCLCT--FGSQIWVGYMNGIVQVLD-LEGNLLGGWV-AHSS-PVIKMA--VGAGYIFTLANHGGIRGWNVTSPGPLDSI 534 (1149)
Q Consensus 462 V~sls~--dG~~LaSGs~DGtIrlWD-~~G~~l~~l~-gH~~-~V~sLa--~Dg~~LaSgS~DgtIRlWdl~sp~pld~~ 534 (1149)
|+++.+ .|+.-++||.||.|+||| +.++|+.++. +|.+ .|.+.. .+|+||+|.|.|.++++|.+.+..++-..
T Consensus 264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred eeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence 999965 589999999999999999 7889987775 7876 455544 49999999999999999999987775332
Q ss_pred h-----------hhhcccccccee-eeeceEEEEEEEEeC
Q 001123 535 L-----------CKELAGKEFLYT-RMENLKILAGTWNVG 562 (1149)
Q Consensus 535 i-----------~~~l~~re~~yt-~~~~~~i~v~TWNv~ 562 (1149)
. .+........|. -+..-...+|+||--
T Consensus 344 tGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaR 383 (430)
T KOG0640|consen 344 TGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDAR 383 (430)
T ss_pred ecCCcccchhhhhhhhhcCccceEEccccccCceeecccc
Confidence 1 112222223333 233457788999864
No 118
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.70 E-value=5.6e-16 Score=175.03 Aligned_cols=278 Identities=14% Similarity=0.189 Sum_probs=193.7
Q ss_pred cccceeEEEEEe--eCCeEEEeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEE
Q 001123 129 TQIGCFLRTIVC--TEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV 206 (1149)
Q Consensus 129 ~~~~~~l~~l~~--~~~~l~ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~L 206 (1149)
-.+|..+..++. ..+.+|+|+-|.|||||+...-.. . . ....+. +.-..-+.++...|||+.|
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k-~----------P-vsqLdc---l~rdnyiRSckL~pdgrtL 480 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNK-S----------P-VSQLDC---LNRDNYIRSCKLLPDGRTL 480 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCC-C----------c-cccccc---cCcccceeeeEecCCCceE
Confidence 446654444444 488899999999999998632111 1 0 111111 1113567788899999999
Q ss_pred EEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcE-EEEECCCcEEEEeCCCcceeeecCCCccee
Q 001123 207 WSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (1149)
Q Consensus 207 aSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L-~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~ 285 (1149)
+.|+.-.++-|||+..-. ..++ ..|..-.-+-.++++|||.++ +|+-.||.|+|||+........|
T Consensus 481 ivGGeastlsiWDLAapT----prik--aeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqf------- 547 (705)
T KOG0639|consen 481 IVGGEASTLSIWDLAAPT----PRIK--AELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQF------- 547 (705)
T ss_pred EeccccceeeeeeccCCC----cchh--hhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecc-------
Confidence 999999999999998633 1111 112222245778999999985 78899999999999664333222
Q ss_pred eEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCC
Q 001123 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (1149)
Q Consensus 286 ~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~ 364 (1149)
.+|. ..+.|+-.+++|.++|+++ |.++|.||+++|..+....-..
T Consensus 548 ------------qGht----------DGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~S------------ 593 (705)
T KOG0639|consen 548 ------------QGHT----------DGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSS------------ 593 (705)
T ss_pred ------------cCCC----------CCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhh------------
Confidence 2333 4467888889999999987 7899999999886543211011
Q ss_pred CccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEeCCCeEE
Q 001123 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLL 443 (1149)
Q Consensus 365 ~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIr 443 (1149)
.|-++...|.+. ++.|=+++.|.
T Consensus 594 --------------------------------------------------------QIfSLg~cP~~dWlavGMens~ve 617 (705)
T KOG0639|consen 594 --------------------------------------------------------QIFSLGYCPTGDWLAVGMENSNVE 617 (705)
T ss_pred --------------------------------------------------------hheecccCCCccceeeecccCcEE
Confidence 112233445554 67787888888
Q ss_pred EEeCCCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEE--EEecCCeEEeecCCC
Q 001123 444 QWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK--MAVGAGYIFTLANHG 518 (1149)
Q Consensus 444 lWD~tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~s--La~Dg~~LaSgS~Dg 518 (1149)
+-..++.....+.-|.+-|.++.| .|++++|.+.|..+-.|-.- |.-+...+ .++.|.+ |+.|.+||+|||.|+
T Consensus 618 vlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdk 696 (705)
T KOG0639|consen 618 VLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDK 696 (705)
T ss_pred EEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCc
Confidence 888888777788888888998865 69999999999999999964 65544333 3456766 457999999999998
Q ss_pred ceeeeec
Q 001123 519 GIRGWNV 525 (1149)
Q Consensus 519 tIRlWdl 525 (1149)
...++.+
T Consensus 697 kATVYeV 703 (705)
T KOG0639|consen 697 KATVYEV 703 (705)
T ss_pred ceEEEEE
Confidence 8887764
No 119
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=4.8e-17 Score=190.69 Aligned_cols=221 Identities=21% Similarity=0.302 Sum_probs=168.5
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
...|.|+..-..++.+++|+.|..+-+|.+..- ..+..|.||..+|.||.|+++-. |++|+.|||||+||+
T Consensus 28 saav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp--------~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 28 SAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP--------NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDL 99 (825)
T ss_pred hhhhceeeeeccceeeccCCCceeeccccccCC--------chhheeeccCCcceeeecCcchhhhcccccCCceeeeeh
Confidence 556778877677899999999999999987642 23667999999999999999765 689999999999999
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEE
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l 348 (1149)
+......+|.++. .++..+.+.+-+...++++ |..+++||.+-..|.+.+
T Consensus 100 eeAk~vrtLtgh~-----------------------------~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~ 150 (825)
T KOG0267|consen 100 EEAKIVRTLTGHL-----------------------------LNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTY 150 (825)
T ss_pred hhhhhhhhhhccc-----------------------------cCcceeeeccceEEeccccccccceehhhhccCceeee
Confidence 8654332332211 2223334555444444444 445999998865565555
Q ss_pred ecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEc
Q 001123 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (1149)
Q Consensus 349 ~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s 428 (1149)
++ |..-+..+.++
T Consensus 151 ~s-------------------------------------------------------------------~~~vv~~l~ls 163 (825)
T KOG0267|consen 151 KS-------------------------------------------------------------------HTRVVDVLRLS 163 (825)
T ss_pred cC-------------------------------------------------------------------CcceeEEEeec
Confidence 43 33334566789
Q ss_pred CCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEec--CCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEE
Q 001123 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK 503 (1149)
Q Consensus 429 ~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~d--G~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~s 503 (1149)
|||. +++|++|.+++|||+ .|+.+.+|.+|...|.++.+. .-.+++|+.|++|++||++ -+.+.........|.+
T Consensus 164 P~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~ 243 (825)
T KOG0267|consen 164 PDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRS 243 (825)
T ss_pred CCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCcee
Confidence 9996 679999999999999 799999999999999999764 4588999999999999998 5777777778889999
Q ss_pred EEe--cCCeEEeec
Q 001123 504 MAV--GAGYIFTLA 515 (1149)
Q Consensus 504 La~--Dg~~LaSgS 515 (1149)
+++ ++..+++|-
T Consensus 244 ~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 244 LAFNPDGKIVLSGE 257 (825)
T ss_pred eeecCCceeeecCc
Confidence 984 777777764
No 120
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=9.1e-16 Score=173.43 Aligned_cols=232 Identities=20% Similarity=0.274 Sum_probs=158.2
Q ss_pred EEEEEee--CCeEEEe-CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeC
Q 001123 135 LRTIVCT--EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (1149)
Q Consensus 135 l~~l~~~--~~~l~ag-~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~ 211 (1149)
+.+|+.. +.-|++| --+.+.+|.+.+|..+.. + +.| -++|+|+.|+.||.+|+|||.
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v-----------------~--~aH-YQ~ITcL~fs~dgs~iiTgsk 143 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSSGILLNV-----------------L--SAH-YQSITCLKFSDDGSHIITGSK 143 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEeccccHHHH-----------------H--Hhh-ccceeEEEEeCCCcEEEecCC
Confidence 4556665 4444566 466699999999998754 1 234 789999999999999999999
Q ss_pred CCeEEEEECCCCCC-CCCCCccceEEeecCCCCEEEEEEeCCC---cEEEEECCCcEEEEeCCCcceeeecCCCcceeeE
Q 001123 212 DGRIMCWKMNARLL-DSDDGFGEVLSWQAHRGPVLSLCISSYG---DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (1149)
Q Consensus 212 DGtIRvWdl~~g~~-~~~~~~~~~~~l~GH~~~VtsVafSpdG---~L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a 287 (1149)
||.|++|++..-.- .......+.+.|.+|+-+|+.+...+.| +|+|+|.|.|||+||+..+..++++.
T Consensus 144 Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-------- 215 (476)
T KOG0646|consen 144 DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-------- 215 (476)
T ss_pred CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe--------
Confidence 99999999743110 0111335578899999999999998765 49999999999999997765433221
Q ss_pred EEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCc
Q 001123 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (1149)
Q Consensus 288 ~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~ 366 (1149)
....+++++.++...+++.+. ++.|.+-++.+- .++..
T Consensus 216 ----------------------fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~--------~~~~~----------- 254 (476)
T KOG0646|consen 216 ----------------------FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKL--------SGQSA----------- 254 (476)
T ss_pred ----------------------cCCcceeEEEcccccEEEecCCcceEEeeehhcC--------Ccccc-----------
Confidence 224467788888877777765 355555554320 11100
Q ss_pred cccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCC--ceEEEEEcCCCc-EEEEeCCCeEE
Q 001123 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR--RTEALTTSIDGM-IWTGGANGLLL 443 (1149)
Q Consensus 367 ~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~--~V~ava~s~Dg~-laSgs~DgtIr 443 (1149)
.+. +.. ++.++... ..|.+|.. .|.|++.+-||. |+||+.||+|.
T Consensus 255 ----~v~------------~k~------------~~~~~t~~----~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vc 302 (476)
T KOG0646|consen 255 ----GVN------------QKG------------RHEENTQI----NVLVGHENESAITCLAISTDGTLLLSGDEDGKVC 302 (476)
T ss_pred ----ccc------------ccc------------ccccccee----eeeccccCCcceeEEEEecCccEEEeeCCCCCEE
Confidence 000 000 00000000 12455555 789999999998 67999999999
Q ss_pred EEeC-CCCeeEeeecCCccEEEEEe
Q 001123 444 QWDP-NGNRLQDFQYLPFAVQCLCT 467 (1149)
Q Consensus 444 lWD~-tG~~l~tl~gH~~~V~sls~ 467 (1149)
+||+ .-+|++++....++|+.+.+
T Consensus 303 vWdi~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 303 VWDIYSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred EEecchHHHHHHHhhhccccceeEe
Confidence 9999 66899988866778887754
No 121
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=99.68 E-value=3.7e-17 Score=175.30 Aligned_cols=83 Identities=34% Similarity=0.537 Sum_probs=60.8
Q ss_pred cCCC-CccCCcccCCCccccccccCCccccCCCCccccccccceeeecCCCccccccccCCCcccceeeeeee-cccccC
Q 001123 844 VFQG-MREADIKFPPTYKFEKHLAGLAGYDSGEKKRVPAWCDRILYRDSRSDLASECSLECPVASSILRYEAC-MDVTDS 921 (1149)
Q Consensus 844 ~f~g-f~E~~I~F~PTYKyd~~~~g~~~yDts~k~R~PsWcDRIL~~~~~~~~~~~~~~~~p~~~~~~~Y~s~-~~~~~S 921 (1149)
.|+. +.|..|.|||||-|..+..|...| .+.|+||||||||+..+....+...+ .|| +.+.|... |+..+-
T Consensus 305 nf~~kl~E~~i~FpPsypysed~~~~E~~---m~TrcPAWcDRILmn~~a~eLv~~~e-~e~---~~~~Y~~vg~e~c~G 377 (391)
T KOG1976|consen 305 NFAFKLKEETIFFPPSYPYSEDDSGKEEF---MRTRCPAWCDRILMNDRANELVKHDE-FEA---SGLYYGLVGEEKCVG 377 (391)
T ss_pred HHHHHHhheeecCCCCCCCCcCccchHHH---HhccChHhhhhhhcCccHHHHhhccc-cCc---ccceecccccccccC
Confidence 3544 889999999999999875554455 48899999999999886544332111 122 33567766 678999
Q ss_pred CCCceeeEEEEE
Q 001123 922 DHKPVRCIFSVD 933 (1149)
Q Consensus 922 DHkPV~a~f~v~ 933 (1149)
|||||...|++-
T Consensus 378 dHKpVfl~~~i~ 389 (391)
T KOG1976|consen 378 DHKPVFLHASIC 389 (391)
T ss_pred CCcceEEEEeec
Confidence 999999998863
No 122
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.2e-15 Score=165.15 Aligned_cols=102 Identities=20% Similarity=0.244 Sum_probs=84.5
Q ss_pred EEEcCCCc-EEEEeCCCeEEEEeCCCCeeEeeecCCcc--EEEEEecCCEEEEeecCcEEEEEeC----CCc-----eee
Q 001123 425 LTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFA--VQCLCTFGSQIWVGYMNGIVQVLDL----EGN-----LLG 492 (1149)
Q Consensus 425 va~s~Dg~-laSgs~DgtIrlWD~tG~~l~tl~gH~~~--V~sls~dG~~LaSGs~DGtIrlWD~----~G~-----~l~ 492 (1149)
+.+..++. |+|++.|.+|.|||+.|+.++++...... -.+++++|++||+++.--.|+||.. +|. ...
T Consensus 193 iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf 272 (420)
T KOG2096|consen 193 IGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVF 272 (420)
T ss_pred EeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhh
Confidence 44455554 78999999999999999999988764332 3367899999999999889999994 253 356
Q ss_pred eeeccCCCeEEEEe--cCCeEEeecCCCceeeeecc
Q 001123 493 GWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 493 ~l~gH~~~V~sLa~--Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
.|.||++.|.++++ +.+.++|+|.||++|+||..
T Consensus 273 ~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 273 SLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred eeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 89999999999985 78899999999999999975
No 123
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.68 E-value=7.5e-16 Score=175.01 Aligned_cols=211 Identities=18% Similarity=0.236 Sum_probs=145.1
Q ss_pred eEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceee----ecCCCcceeeEEEeeeccccccccccccceee
Q 001123 234 VLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKAL----SLKPEERHTAALIVERSYIDLRSHLSVNGFSS 308 (1149)
Q Consensus 234 ~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~----~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~ 308 (1149)
-.+|++|+..|.++++.|.|- ++|||-|-+||.||++...... .+.+.
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~--------------------------- 212 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPC--------------------------- 212 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcc---------------------------
Confidence 456899999999999999995 9999999999999997533211 11111
Q ss_pred eecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccce
Q 001123 309 ILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQS 387 (1149)
Q Consensus 309 ~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~ 387 (1149)
....++.+.++..+..+...+ ...++|.|-.--+.+...+++-.+.
T Consensus 213 -E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~-------------------------------- 259 (641)
T KOG0772|consen 213 -ETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIR-------------------------------- 259 (641)
T ss_pred -cccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhh--------------------------------
Confidence 123456666666666554433 3447777743323333333322220
Q ss_pred eeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc--EEEEeCCCeEEEEeCC--CCeeEeeec-----C
Q 001123 388 SFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDPN--GNRLQDFQY-----L 458 (1149)
Q Consensus 388 si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~--laSgs~DgtIrlWD~t--G~~l~tl~g-----H 458 (1149)
+...-.+|...+.+..+.|+.. +++++.|||+||||++ -+.++.+.. .
T Consensus 260 -----------------------Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 260 -----------------------DMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred -----------------------hhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 0111345666777778888754 8999999999999993 244555432 2
Q ss_pred CccEEEE--EecCCEEEEeecCcEEEEEeCCCc----eeeeeeccCC--CeEEEEe--cCCeEEeecCCCceeeeeccC
Q 001123 459 PFAVQCL--CTFGSQIWVGYMNGIVQVLDLEGN----LLGGWVAHSS--PVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 459 ~~~V~sl--s~dG~~LaSGs~DGtIrlWD~~G~----~l~~l~gH~~--~V~sLa~--Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
.-++++- ..||++||+|+.||.|++||..+. ....-.+|.. .|++|++ ||++|+|-|.|+++|+||+..
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq 395 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ 395 (641)
T ss_pred ccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccc
Confidence 2234433 447999999999999999996422 2456679998 9999984 999999999999999999864
No 124
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.4e-14 Score=157.10 Aligned_cols=253 Identities=13% Similarity=0.182 Sum_probs=179.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~ 270 (1149)
...|..|.|+|.+..|+-+|-||++|++|+.... ....+ -|.+|+++.+|.++.++++|+.||+||+.|+.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~--------l~~~~-~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS--------LKLKF-KHGAPLLDCAFADESTIVTGGLDGQVRRYDLN 83 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchh--------hhhhe-ecCCceeeeeccCCceEEEeccCceEEEEEec
Confidence 3568899999998888888999999999998633 12223 48999999999998889999999999999998
Q ss_pred CcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEe
Q 001123 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN 349 (1149)
Q Consensus 271 t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~ 349 (1149)
++...... .| ...+.|+......+.+.+++ |++|++||.+...+..++.
T Consensus 84 ~~~~~~ig--------------------th----------~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d 133 (323)
T KOG1036|consen 84 TGNEDQIG--------------------TH----------DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD 133 (323)
T ss_pred CCcceeec--------------------cC----------CCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc
Confidence 86533221 12 14466777666667777777 5789999998744433332
Q ss_pred cCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCC--------CCc
Q 001123 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDD--------NRR 421 (1149)
Q Consensus 350 ~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~--------~~~ 421 (1149)
....+ . ...-.+..+++|..+....+++...+... ...
T Consensus 134 ~~kkV----------------------y------------~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyq 179 (323)
T KOG1036|consen 134 QGKKV----------------------Y------------CMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQ 179 (323)
T ss_pred cCceE----------------------E------------EEeccCCEEEEeecCceEEEEEcccccchhhhccccceeE
Confidence 22211 0 01112345667777766666664333221 235
Q ss_pred eEEEEEcCCCc-EEEEeCCCeEEEEeC-CC----CeeEeeecCC---------ccEEEEEec--CCEEEEeecCcEEEEE
Q 001123 422 TEALTTSIDGM-IWTGGANGLLLQWDP-NG----NRLQDFQYLP---------FAVQCLCTF--GSQIWVGYMNGIVQVL 484 (1149)
Q Consensus 422 V~ava~s~Dg~-laSgs~DgtIrlWD~-tG----~~l~tl~gH~---------~~V~sls~d--G~~LaSGs~DGtIrlW 484 (1149)
+.+|+.-|++. .+.+|-||-|-+=.+ .. +..-.|++|. .+|++|++. -+.+|+|+.||.|-+|
T Consensus 180 tR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~W 259 (323)
T KOG1036|consen 180 TRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIW 259 (323)
T ss_pred EEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEc
Confidence 77888777655 678889998877666 23 3445677775 368888875 4789999999999999
Q ss_pred eCC-CceeeeeeccCCCeEEEEe--cCCeEEeecC
Q 001123 485 DLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLAN 516 (1149)
Q Consensus 485 D~~-G~~l~~l~gH~~~V~sLa~--Dg~~LaSgS~ 516 (1149)
|.- .+.+..|..-...|.++++ ||..||.|+.
T Consensus 260 d~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 260 DLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 975 5677777777777888885 8999998863
No 125
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.67 E-value=2.2e-14 Score=171.02 Aligned_cols=347 Identities=16% Similarity=0.200 Sum_probs=215.4
Q ss_pred CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCCCC
Q 001123 149 GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDS 227 (1149)
Q Consensus 149 ~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg-~~LaSGS~DGtIRvWdl~~g~~~~ 227 (1149)
.+|+|.+.|++.++.+.+ |.. . .+.|++|+|..|| .++|+|...|.+-+||++...
T Consensus 222 ~~G~ViifNlK~dkil~s-----------------Fk~--d-~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kk--- 278 (910)
T KOG1539|consen 222 ENGTVIIFNLKFDKILMS-----------------FKQ--D-WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKK--- 278 (910)
T ss_pred cCceEEEEEcccCcEEEE-----------------EEc--c-ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCe---
Confidence 489999999998776644 321 1 4799999999998 688999999999999998754
Q ss_pred CCCccceEEe-ecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcce---eeec-------------CC-CcceeeEE
Q 001123 228 DDGFGEVLSW-QAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEK---ALSL-------------KP-EERHTAAL 288 (1149)
Q Consensus 228 ~~~~~~~~~l-~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~---~~~l-------------~~-~~~~~~a~ 288 (1149)
.+..+ .+|.++|+...|-|.-- |+|++.|...|+|=.+++.- .+.. .+ .+.++...
T Consensus 279 -----l~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa 353 (910)
T KOG1539|consen 279 -----LINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSA 353 (910)
T ss_pred -----eeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEec
Confidence 23333 48999999999998544 78999999999996664221 1111 10 01111111
Q ss_pred Eeeeccccc-----------------cccccccce--eeeecCCeEEEEEcCCCCE----EEEe--cCCceEEEEcCCcc
Q 001123 289 IVERSYIDL-----------------RSHLSVNGF--SSILTSDIKNLLSDHSRAK----VWSA--GFLSFALWDARTRE 343 (1149)
Q Consensus 289 ~~~~~~~~l-----------------~~~~~~~g~--~~~~~~dv~~las~~~~~~----v~Sa--sd~tIrLWD~~TG~ 343 (1149)
.-+|++... +.....+.. ...--..+..+++...+.. +.++ ++..++-|+.+...
T Consensus 354 ~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~ 433 (910)
T KOG1539|consen 354 KQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT 433 (910)
T ss_pred ccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcc
Confidence 111211100 000000000 0000122444444433222 2232 33457889987655
Q ss_pred E-EEEEecC-----CceeeEEeeccC--------CCccccc-cceeeE-----EecCCCCccceeeeeeccccceEeecC
Q 001123 344 L-LKVFNID-----GQIENRVDMSLL--------PDFAMED-EFKTKI-----VTSSKKDKAQSSFGFFQRSRNAIMGAA 403 (1149)
Q Consensus 344 ~-L~~l~~~-----g~~~~~v~~S~~--------~~~~~~~-~~~~~~-----~s~~~k~~~~~si~f~~~~~~~i~G~~ 403 (1149)
. -.+|... .....++..+.= ..+.++. .++..+ -.+..+...+.+++.....+.++++..
T Consensus 434 ~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~ 513 (910)
T KOG1539|consen 434 SGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGA 513 (910)
T ss_pred cccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccC
Confidence 4 3444332 222233333321 1111110 011111 112234566667777777777999999
Q ss_pred CcEEEEeecc--cccCC---CCceEEEEEcC-CCcEEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEE
Q 001123 404 DAVRRVAAKG--GFGDD---NRRTEALTTSI-DGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWV 474 (1149)
Q Consensus 404 d~v~rv~~~g--~~~~~---~~~V~ava~s~-Dg~laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaS 474 (1149)
+|+...|+.. .+... ...+.++..+. .+.++.+..|-.|++.|+ +-+.++.|.||.+.|+++++ ||++|++
T Consensus 514 ~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlis 593 (910)
T KOG1539|consen 514 DGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLIS 593 (910)
T ss_pred cceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEE
Confidence 9999998732 22111 12334444333 345778889999999999 78899999999999998865 8999999
Q ss_pred eecCcEEEEEeC-CCceeeeeeccCCCeEEEE--ecCCeEEeecCC-Cceeeee
Q 001123 475 GYMNGIVQVLDL-EGNLLGGWVAHSSPVIKMA--VGAGYIFTLANH-GGIRGWN 524 (1149)
Q Consensus 475 Gs~DGtIrlWD~-~G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~D-gtIRlWd 524 (1149)
++.|++||+||+ +|.++..+.- ..+..+|. |.|.+|||+..| ..|.+|.
T Consensus 594 asmD~tIr~wDlpt~~lID~~~v-d~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 594 ASMDSTIRTWDLPTGTLIDGLLV-DSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred eecCCcEEEEeccCcceeeeEec-CCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 999999999996 5888776643 34555555 799999999988 7999996
No 126
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=6.2e-16 Score=178.04 Aligned_cols=267 Identities=21% Similarity=0.283 Sum_probs=164.1
Q ss_pred eeEEEEEee--CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCCEEEE
Q 001123 133 CFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWS 208 (1149)
Q Consensus 133 ~~l~~l~~~--~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~~LaS 208 (1149)
.|+|.++.+ +.-++. +.|++++||+++....-.. .+-.|.. ++.| .++|+|+++.+.+..++|
T Consensus 295 d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~------------~~~epi~-tfraH~gPVl~v~v~~n~~~~ys 361 (577)
T KOG0642|consen 295 DCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAE------------KDVEPIL-TFRAHEGPVLCVVVPSNGEHCYS 361 (577)
T ss_pred hhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccc------------cceeeeE-EEecccCceEEEEecCCceEEEe
Confidence 366666666 455554 5699999999954221111 1112222 1334 899999999999999999
Q ss_pred EeCCCeEEEEECCCCC--CCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCccee
Q 001123 209 GHRDGRIMCWKMNARL--LDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (1149)
Q Consensus 209 GS~DGtIRvWdl~~g~--~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~ 285 (1149)
|+-||+||.|++.... .++..+.....++.||++.|+.+++|+... |+|+|.|||+|+|+.....+ .++.....+.
T Consensus 362 gg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g 440 (577)
T KOG0642|consen 362 GGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHG 440 (577)
T ss_pred eccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccC
Confidence 9999999999875322 011223333456899999999999998765 99999999999999865443 2222211111
Q ss_pred eEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEecCCceeeEEeeccCCC
Q 001123 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (1149)
Q Consensus 286 ~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~ 365 (1149)
.-+++++....+ ... +++...+---+.|..++.-+.+|.....
T Consensus 441 ~Plsvd~~ss~~-----------------a~~--------~~s~~~~~~~~~~~ev~s~~~~~~s~~~------------ 483 (577)
T KOG0642|consen 441 YPLSVDRTSSRP-----------------AHS--------LASFRFGYTSIDDMEVVSDLLIFESSAS------------ 483 (577)
T ss_pred CcceEeeccchh-----------------Hhh--------hhhcccccccchhhhhhhheeeccccCC------------
Confidence 111111110000 000 0000000011223333322222211000
Q ss_pred ccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCC-CcEEEEeCCCeEEE
Q 001123 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID-GMIWTGGANGLLLQ 444 (1149)
Q Consensus 366 ~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~D-g~laSgs~DgtIrl 444 (1149)
.+ ......+.-|+..|. +..+++..|++|++
T Consensus 484 ----------------------------------~~--------------~~~~~~in~vVs~~~~~~~~~~hed~~Ir~ 515 (577)
T KOG0642|consen 484 ----------------------------------PG--------------PRRYPQINKVVSHPTADITFTAHEDRSIRF 515 (577)
T ss_pred ----------------------------------Cc--------------ccccCccceEEecCCCCeeEecccCCceec
Confidence 00 000112233333444 45789999999999
Q ss_pred EeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-CceeeeeeccC
Q 001123 445 WDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS 498 (1149)
Q Consensus 445 WD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~ 498 (1149)
.|. +|..+..+..|...|.++++ +|-+|++|+.||.|++|.+. -.++....+|.
T Consensus 516 ~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 516 FDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred ccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 999 89999999999999999976 58999999999999999986 45666666665
No 127
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.66 E-value=8e-15 Score=155.92 Aligned_cols=244 Identities=19% Similarity=0.215 Sum_probs=161.3
Q ss_pred CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001123 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (1149)
Q Consensus 142 ~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~~LaSGS~DGtIRvWd 219 (1149)
+..||+ +-|.++-||=..+|..+++ ..| +++|.|++++-+.+.|+|||.|.++|+||
T Consensus 22 GDLlFscaKD~~~~vw~s~nGerlGt---------------------y~GHtGavW~~Did~~s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 22 GDLLFSCAKDSTPTVWYSLNGERLGT---------------------YDGHTGAVWCCDIDWDSKHLITGSADQTAKLWD 80 (327)
T ss_pred CcEEEEecCCCCceEEEecCCceeee---------------------ecCCCceEEEEEecCCcceeeeccccceeEEEE
Confidence 677787 5599999999888887765 334 99999999999999999999999999999
Q ss_pred CCCCCC-----------------------------CCC----------------CCccceEEeecCCCCEEEEEEeCCCc
Q 001123 220 MNARLL-----------------------------DSD----------------DGFGEVLSWQAHRGPVLSLCISSYGD 254 (1149)
Q Consensus 220 l~~g~~-----------------------------~~~----------------~~~~~~~~l~GH~~~VtsVafSpdG~ 254 (1149)
+++|++ |.. ..-.+.+.+.-|...++++.++|-++
T Consensus 81 v~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~ 160 (327)
T KOG0643|consen 81 VETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE 160 (327)
T ss_pred cCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence 999884 000 01112344455778899999999887
Q ss_pred -EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CC
Q 001123 255 -LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FL 332 (1149)
Q Consensus 255 -L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~ 332 (1149)
|++|-+||.|.+||+.+++....-. +-| +..+..+..++++....+++ |.
T Consensus 161 ~ii~Ghe~G~is~~da~~g~~~v~s~------------------~~h----------~~~Ind~q~s~d~T~FiT~s~Dt 212 (327)
T KOG0643|consen 161 TIIAGHEDGSISIYDARTGKELVDSD------------------EEH----------SSKINDLQFSRDRTYFITGSKDT 212 (327)
T ss_pred EEEEecCCCcEEEEEcccCceeeech------------------hhh----------ccccccccccCCcceEEecccCc
Confidence 8999999999999998875433210 001 23456667777877777665 67
Q ss_pred ceEEEEcCCccEEEEEecCCceeeEEeeccCCCcccccc-ceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEee
Q 001123 333 SFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDE-FKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA 411 (1149)
Q Consensus 333 tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~-~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~ 411 (1149)
+.+|||+.+-++++++.-+. .+|+.+++|..+..+-.. ..++.+.+...... .|-.+--.++.. ..
T Consensus 213 takl~D~~tl~v~Kty~te~-PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~G----KFEArFyh~i~e--------EE 279 (327)
T KOG0643|consen 213 TAKLVDVRTLEVLKTYTTER-PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAG----KFEARFYHLIFE--------EE 279 (327)
T ss_pred cceeeeccceeeEEEeeecc-cccceecccccceEEecCCceeeeeeeeccccc----chhhhHHHHHHH--------HH
Confidence 79999999999999997544 346667777655433210 00111111110000 000000000000 00
Q ss_pred cccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC
Q 001123 412 KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP 447 (1149)
Q Consensus 412 ~g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~ 447 (1149)
.|...+|-.+|++|+++|||+ .+||++||.||+--.
T Consensus 280 igrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 280 IGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHF 316 (327)
T ss_pred hccccccccCcceeEECCCCcccccCCCCceEEEEEe
Confidence 234567788888888888887 458888888887643
No 128
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.66 E-value=1.7e-15 Score=171.24 Aligned_cols=235 Identities=20% Similarity=0.334 Sum_probs=173.4
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCC
Q 001123 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (1149)
Q Consensus 192 ~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~ 270 (1149)
.-|.++++|...+.++||++ |-|||||+..-. +..+...+-. .--.+.|.++.+.|||+ |+.|++-.|+-|||+.
T Consensus 420 EvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg--~k~PvsqLdc-l~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 420 EVVCAVTISNPTRHVYTGGK-GCVKVWDISQPG--NKSPVSQLDC-LNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred cEEEEEEecCCcceeEecCC-CeEEEeeccCCC--CCCccccccc-cCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 45677899999999999987 569999997532 1111111111 22356899999999998 9999999999999997
Q ss_pred CcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEE-EecCCceEEEEcCCccEEEEEe
Q 001123 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAGFLSFALWDARTRELLKVFN 349 (1149)
Q Consensus 271 t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~-Sasd~tIrLWD~~TG~~L~~l~ 349 (1149)
+..+.+ ..+..+ . ...+..|+.+++....+ +++|+.|+|||+.+..+++.
T Consensus 496 apTpri--kaelts-------------------s------apaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrq-- 546 (705)
T KOG0639|consen 496 APTPRI--KAELTS-------------------S------APACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQ-- 546 (705)
T ss_pred CCCcch--hhhcCC-------------------c------chhhhhhhcCCccceeeeeccCCcEEEEEcccceeeec--
Confidence 643322 111100 0 01233455666655544 45788999999976544443
Q ss_pred cCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcC
Q 001123 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (1149)
Q Consensus 350 ~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~ 429 (1149)
|.+|...+.|+.+++
T Consensus 547 -----------------------------------------------------------------fqGhtDGascIdis~ 561 (705)
T KOG0639|consen 547 -----------------------------------------------------------------FQGHTDGASCIDISK 561 (705)
T ss_pred -----------------------------------------------------------------ccCCCCCceeEEecC
Confidence 344455556777899
Q ss_pred CCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEE--EecCCEEEEeecCcEEEEEeCCCceeeeeeccCCCeEEEE
Q 001123 430 DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMA 505 (1149)
Q Consensus 430 Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sl--s~dG~~LaSGs~DGtIrlWD~~G~~l~~l~gH~~~V~sLa 505 (1149)
||+ ||+|+-|.+||-||+ +|..++... -.+.|.++ ++.|.+||+|-..+.+.|.-.++.....+.-|.+-|.+|.
T Consensus 562 dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlK 640 (705)
T KOG0639|consen 562 DGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLK 640 (705)
T ss_pred CCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEE
Confidence 987 999999999999999 887665432 24678888 5689999999999999999988877777888999999987
Q ss_pred --ecCCeEEeecCCCceeeeec
Q 001123 506 --VGAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 506 --~Dg~~LaSgS~DgtIRlWdl 525 (1149)
..|++.+|.+.|+.+-.|..
T Consensus 641 Fa~cGkwfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 641 FAYCGKWFVSTGKDNLLNAWRT 662 (705)
T ss_pred ecccCceeeecCchhhhhhccC
Confidence 59999999999999999984
No 129
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=6e-15 Score=155.23 Aligned_cols=243 Identities=13% Similarity=0.161 Sum_probs=154.4
Q ss_pred CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcC--CCCEEEEEeCCCeEEE
Q 001123 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDE--ASGVVWSGHRDGRIMC 217 (1149)
Q Consensus 142 ~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~--dg~~LaSGS~DGtIRv 217 (1149)
+++|.+ ++|++||++.+...-... ++ ..+.| .+||.-++|.. -|.+|||+|+||+|.+
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~~s~-----------------ll-~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNGQSK-----------------LL-AELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred cceeeeecCCccEEEEEEcCCCCce-----------------ee-eEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 566664 789999999976433211 12 22456 99999999986 7999999999999999
Q ss_pred EECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc---EEEEECCCcEEEEeCCCc-ce-e-eecCCCcceeeEEEee
Q 001123 218 WKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD---LWSGSEGGGIKIWPWEAI-EK-A-LSLKPEERHTAALIVE 291 (1149)
Q Consensus 218 Wdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~---L~SGS~DgTIRVWdl~t~-~~-~-~~l~~~~~~~~a~~~~ 291 (1149)
|.-++|+ ......+.+|.+.|++|+|.|.+. |+.||.||+|+|-+.++. .- . .....++.
T Consensus 85 Wke~~g~------w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~-------- 150 (299)
T KOG1332|consen 85 WKEENGR------WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI-------- 150 (299)
T ss_pred EecCCCc------hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc--------
Confidence 9988765 244566789999999999999764 789999999999887642 10 0 00011111
Q ss_pred eccccccccccccceeeeecC-CeEEEEEcC--CCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCcc
Q 001123 292 RSYIDLRSHLSVNGFSSILTS-DIKNLLSDH--SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (1149)
Q Consensus 292 ~~~~~l~~~~~~~g~~~~~~~-dv~~las~~--~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~ 367 (1149)
.++.++-.|.. +...+-..+ .-.+++|++ |..|+||+...++-. +
T Consensus 151 ----------GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~--~------------------- 199 (299)
T KOG1332|consen 151 ----------GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK--L------------------- 199 (299)
T ss_pred ----------ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchh--h-------------------
Confidence 11122111110 000000000 113566654 778999997654200 0
Q ss_pred ccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCC-----CcEEEEeCCCeE
Q 001123 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID-----GMIWTGGANGLL 442 (1149)
Q Consensus 368 ~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~D-----g~laSgs~DgtI 442 (1149)
...|.+|...|..|++.|. .+|||+|+||+|
T Consensus 200 --------------------------------------------e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~v 235 (299)
T KOG1332|consen 200 --------------------------------------------ERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTV 235 (299)
T ss_pred --------------------------------------------hhhhhhcchhhhhhhhccccCCCceeeEEecCCCcE
Confidence 0013344444444444443 258999999999
Q ss_pred EEEeCC--CC-e-eEeeecCCccEEEEE--ecCCEEEEeecCcEEEEEe--CCCcee
Q 001123 443 LQWDPN--GN-R-LQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLD--LEGNLL 491 (1149)
Q Consensus 443 rlWD~t--G~-~-l~tl~gH~~~V~sls--~dG~~LaSGs~DGtIrlWD--~~G~~l 491 (1149)
.||... ++ - ..-|..-...++.++ +.|..|++++.|..|.+|- ++|+-.
T Consensus 236 iIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~ 292 (299)
T KOG1332|consen 236 IIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWE 292 (299)
T ss_pred EEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEE
Confidence 999873 21 1 122233456788775 4699999999999999997 567653
No 130
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=3.3e-15 Score=157.10 Aligned_cols=251 Identities=14% Similarity=0.108 Sum_probs=158.1
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeC--CCc-EEEEECCCcEEEEe
Q 001123 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS--YGD-LWSGSEGGGIKIWP 268 (1149)
Q Consensus 192 ~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSp--dG~-L~SGS~DgTIRVWd 268 (1149)
..|-.+..+--|++|||+|.|++|||+.+.... ....+.+|.||+|||+-++|.. .|. |+|+|.||.|-||.
T Consensus 12 D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~-----~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 12 DMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG-----QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhHhhhhhhcceeeeecCCccEEEEEEcCCC-----CceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 344455556678999999999999999997643 1245778999999999999986 677 78999999999999
Q ss_pred CCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCC--CCEEEEe-cCCceEEEEcCCc-c-
Q 001123 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSA-GFLSFALWDARTR-E- 343 (1149)
Q Consensus 269 l~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~--~~~v~Sa-sd~tIrLWD~~TG-~- 343 (1149)
-+++.=. ....+. .| ...+++++..+. +-.|+++ +|++|.+.+.++. .
T Consensus 87 e~~g~w~-k~~e~~----------------~h----------~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w 139 (299)
T KOG1332|consen 87 EENGRWT-KAYEHA----------------AH----------SASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW 139 (299)
T ss_pred cCCCchh-hhhhhh----------------hh----------cccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc
Confidence 8665211 111111 11 133444444332 2244444 4677887775432 0
Q ss_pred E-EEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCce
Q 001123 344 L-LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (1149)
Q Consensus 344 ~-L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V 422 (1149)
. -+....|..-++++.+.| .. . .+.+.++..
T Consensus 140 ~t~ki~~aH~~GvnsVswap-----------------a~---------------------~--------~g~~~~~~~-- 171 (299)
T KOG1332|consen 140 TTSKIVFAHEIGVNSVSWAP-----------------AS---------------------A--------PGSLVDQGP-- 171 (299)
T ss_pred cchhhhhccccccceeeecC-----------------cC---------------------C--------CccccccCc--
Confidence 0 000111111111111111 00 0 001111100
Q ss_pred EEEEEcCCCcEEEEeCCCeEEEEeC-CC--CeeEeeecCCccEEEEEe--c-C---CEEEEeecCcEEEEEeCC--Cc--
Q 001123 423 EALTTSIDGMIWTGGANGLLLQWDP-NG--NRLQDFQYLPFAVQCLCT--F-G---SQIWVGYMNGIVQVLDLE--GN-- 489 (1149)
Q Consensus 423 ~ava~s~Dg~laSgs~DgtIrlWD~-tG--~~l~tl~gH~~~V~sls~--d-G---~~LaSGs~DGtIrlWD~~--G~-- 489 (1149)
..+-.+++||+.|..|+||+. ++ ..-++|.+|.+.|..++. . | .+|||+|.||++-||-.+ +.
T Consensus 172 ----~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w 247 (299)
T KOG1332|consen 172 ----AAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW 247 (299)
T ss_pred ----ccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence 011125899999999999999 45 344679999999998853 2 2 699999999999999853 21
Q ss_pred eeeeeeccCCCeEEEE--ecCCeEEeecCCCceeeeecc
Q 001123 490 LLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 490 ~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
....+.--...++.++ +.|+.|+-++.|+.|.+|.-.
T Consensus 248 k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 248 KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 1233333567899987 589999999999999999744
No 131
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.65 E-value=1.5e-13 Score=153.06 Aligned_cols=242 Identities=11% Similarity=0.051 Sum_probs=154.2
Q ss_pred CCeEEE--eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEE-EEeCCCeEEEE
Q 001123 142 EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVW-SGHRDGRIMCW 218 (1149)
Q Consensus 142 ~~~l~a--g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~La-SGS~DGtIRvW 218 (1149)
++.+++ +.++.|++||+.++..... +.....+..++++|+++.|+ +++.|+.|++|
T Consensus 42 g~~l~~~~~~~~~v~~~d~~~~~~~~~---------------------~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~ 100 (300)
T TIGR03866 42 GKLLYVCASDSDTIQVIDLATGEVIGT---------------------LPSGPDPELFALHPNGKILYIANEDDNLVTVI 100 (300)
T ss_pred CCEEEEEECCCCeEEEEECCCCcEEEe---------------------ccCCCCccEEEECCCCCEEEEEcCCCCeEEEE
Confidence 445654 3578899999987654332 11012245688999998775 45679999999
Q ss_pred ECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCC-cEEEEeCCCcceeeecCCCcceeeEEEeeecccc
Q 001123 219 KMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGG-GIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (1149)
Q Consensus 219 dl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~Dg-TIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~ 296 (1149)
|+.++. .+..+.. ...+.+++|+|+|+ +++++.++ .+.+||..+++......
T Consensus 101 d~~~~~--------~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~----------------- 154 (300)
T TIGR03866 101 DIETRK--------VLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL----------------- 154 (300)
T ss_pred ECCCCe--------EEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-----------------
Confidence 998743 2344442 23468899999998 66777664 57788987654321110
Q ss_pred ccccccccceeeeecCCeEEEEEcCCCCEEEEe--cCCceEEEEcCCccEEEEEecCCceeeEEeeccCCCcccccccee
Q 001123 297 LRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA--GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKT 374 (1149)
Q Consensus 297 l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sa--sd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~ 374 (1149)
.......+++++++..++.+ .++.|++||+.++++++.+..+...
T Consensus 155 -------------~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~-------------------- 201 (300)
T TIGR03866 155 -------------VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPG-------------------- 201 (300)
T ss_pred -------------cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccc--------------------
Confidence 00112345667777766533 2678999999998877655321100
Q ss_pred eEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCcE-E-EEeCCCeEEEEeC-CCCe
Q 001123 375 KIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMI-W-TGGANGLLLQWDP-NGNR 451 (1149)
Q Consensus 375 ~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~l-a-Sgs~DgtIrlWD~-tG~~ 451 (1149)
.. ........+++++||.. + +.+.+++|.+||+ +++.
T Consensus 202 --~~--------------------------------------~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~ 241 (300)
T TIGR03866 202 --VH--------------------------------------PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEV 241 (300)
T ss_pred --cc--------------------------------------cccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 00 00001123557888863 3 4455678999999 6777
Q ss_pred eEeeecCCccEEEEEe--cCCEEEEe-ecCcEEEEEeCC-CceeeeeeccCCCeEEEE
Q 001123 452 LQDFQYLPFAVQCLCT--FGSQIWVG-YMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA 505 (1149)
Q Consensus 452 l~tl~gH~~~V~sls~--dG~~LaSG-s~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa 505 (1149)
+..+. +...+.++++ +|++|+++ ..+|+|++||++ ++++..+..+ ...++++
T Consensus 242 ~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~ 297 (300)
T TIGR03866 242 LDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVV 297 (300)
T ss_pred EEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeE
Confidence 76653 3346777755 79999887 469999999986 7788888755 3446665
No 132
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.64 E-value=5.6e-15 Score=163.11 Aligned_cols=114 Identities=18% Similarity=0.291 Sum_probs=99.6
Q ss_pred cccCCCCceEEEEEcCC--CcEEEEeCCCeEEEEeC-CC---CeeEeeecCCccEEEEEecC--CEEEEeecCcEEEEEe
Q 001123 414 GFGDDNRRTEALTTSID--GMIWTGGANGLLLQWDP-NG---NRLQDFQYLPFAVQCLCTFG--SQIWVGYMNGIVQVLD 485 (1149)
Q Consensus 414 ~~~~~~~~V~ava~s~D--g~laSgs~DgtIrlWD~-tG---~~l~tl~gH~~~V~sls~dG--~~LaSGs~DGtIrlWD 485 (1149)
.|.+|...|+.+.+||. +.++|||.||+|+|||+ .| .|+.+ +.|.+.|+.|++++ .+||+|+.||+++|||
T Consensus 252 Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwD 330 (440)
T KOG0302|consen 252 PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWD 330 (440)
T ss_pred cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEE
Confidence 47788899999999885 55899999999999999 66 56655 88999999999974 4899999999999999
Q ss_pred CC----CceeeeeeccCCCeEEEEe---cCCeEEeecCCCceeeeeccCC
Q 001123 486 LE----GNLLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVTSP 528 (1149)
Q Consensus 486 ~~----G~~l~~l~gH~~~V~sLa~---Dg~~LaSgS~DgtIRlWdl~sp 528 (1149)
+. |++++.|+-|..+|++|.+ +...++.+|.|..|.+||+...
T Consensus 331 LR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 331 LRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred hhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 64 7899999999999999994 5778889999999999999753
No 133
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.63 E-value=3.1e-14 Score=152.88 Aligned_cols=280 Identities=17% Similarity=0.184 Sum_probs=185.5
Q ss_pred eecCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCc--cceE-----EeecCCCCEEEEEEeCCCc--EEE
Q 001123 188 VKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGF--GEVL-----SWQAHRGPVLSLCISSYGD--LWS 257 (1149)
Q Consensus 188 ~~G~~~V~~lafs~d-g~~LaSGS~DGtIRvWdl~~g~~~~~~~~--~~~~-----~l~GH~~~VtsVafSpdG~--L~S 257 (1149)
.| .+.|++|.+++. |+++.||+.||.|-+||++...-.....+ +... .=.||+=+|.++.+-|-.. +.|
T Consensus 41 ~H-gGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 41 PH-GGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred cC-CCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 56 689999999985 89999999999999999975330000000 0000 1147888999999988544 679
Q ss_pred EECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecC-CceEE
Q 001123 258 GSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFAL 336 (1149)
Q Consensus 258 GS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd-~tIrL 336 (1149)
+|.|.|+||||..|.+....++-++.. ..|. ..-++.++ .+++.+.+ -.|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~V-------------Ysha------------mSp~a~sH--cLiA~gtr~~~VrL 172 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKV-------------YSHA------------MSPMAMSH--CLIAAGTRDVQVRL 172 (397)
T ss_pred ccccceEEEeecccceeeEEeecCcee-------------ehhh------------cChhhhcc--eEEEEecCCCcEEE
Confidence 999999999999987766555433210 0111 00111112 23444443 45999
Q ss_pred EEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec----
Q 001123 337 WDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK---- 412 (1149)
Q Consensus 337 WD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~---- 412 (1149)
-|+.+|.+-++|++|.+-+-.|.++|..+. .+++|++|+..|+|+.
T Consensus 173 CDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~------------------------------vLatgsaDg~irlWDiRras 222 (397)
T KOG4283|consen 173 CDIASGSFSHTLSGHRDGVLAVEWSPSSEW------------------------------VLATGSADGAIRLWDIRRAS 222 (397)
T ss_pred EeccCCcceeeeccccCceEEEEeccCcee------------------------------EEEecCCCceEEEEEeeccc
Confidence 999999999999999887667777764442 2234444444444430
Q ss_pred -----------------ccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCC-eeEeee--cCCccEE-E--E-E
Q 001123 413 -----------------GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGN-RLQDFQ--YLPFAVQ-C--L-C 466 (1149)
Q Consensus 413 -----------------g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~-~l~tl~--gH~~~V~-s--l-s 466 (1149)
.+-..|...+..++++.||. +++.+.|..+++|+. +|+ -++.+. .|+..+. . + +
T Consensus 223 gcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~ 302 (397)
T KOG4283|consen 223 GCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQS 302 (397)
T ss_pred ceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEee
Confidence 01235677889999998886 899999999999999 673 233321 1222111 1 1 2
Q ss_pred ecCCEEEEeecCcEEEEEeC-CCceeeeeeccCCCeEEEE--ecCCeEEeecCCCceeeeec
Q 001123 467 TFGSQIWVGYMNGIVQVLDL-EGNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 467 ~dG~~LaSGs~DGtIrlWD~-~G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl 525 (1149)
.+...++---++++|.|+.+ +|..++.|.+|-..|.+-+ ++-+...+++.|+.|..|-.
T Consensus 303 ~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 303 MDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 22232332335588999994 6999999999977887766 46678999999999999976
No 134
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=3.6e-16 Score=183.47 Aligned_cols=215 Identities=18% Similarity=0.276 Sum_probs=164.8
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCc
Q 001123 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEE 282 (1149)
Q Consensus 204 ~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~ 282 (1149)
..+.++..+-..|+||... +..|...|.++.+-..++ +++|++|-.+-||...-.-....+
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~--------------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~---- 66 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTRE--------------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSL---- 66 (825)
T ss_pred cccceeeeeeccccccchh--------------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhee----
Confidence 3456667777888888542 357999999999866666 789999999999987432211111
Q ss_pred ceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeec
Q 001123 283 RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMS 361 (1149)
Q Consensus 283 ~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S 361 (1149)
.+| .+.+.++-++....+|+.++ +++||+||+..+..+++|.
T Consensus 67 ---------------~~h----------espIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLt------------ 109 (825)
T KOG0267|consen 67 ---------------TGH----------ESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLT------------ 109 (825)
T ss_pred ---------------ecc----------CCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhh------------
Confidence 122 25677777777777666554 6799999998766555443
Q ss_pred cCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEeCCC
Q 001123 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANG 440 (1149)
Q Consensus 362 ~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs~Dg 440 (1149)
+|...+..|.|+|-+. .++|+.|.
T Consensus 110 -------------------------------------------------------gh~~~~~sv~f~P~~~~~a~gStdt 134 (825)
T KOG0267|consen 110 -------------------------------------------------------GHLLNITSVDFHPYGEFFASGSTDT 134 (825)
T ss_pred -------------------------------------------------------ccccCcceeeeccceEEeccccccc
Confidence 3333444555677664 57899999
Q ss_pred eEEEEeC-CCCeeEeeecCCccEEEE--EecCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEEEEecC--CeEEee
Q 001123 441 LLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGA--GYIFTL 514 (1149)
Q Consensus 441 tIrlWD~-tG~~l~tl~gH~~~V~sl--s~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa~Dg--~~LaSg 514 (1149)
.+++||. .-.|..++.+|...|.++ +++|+++++|+.|.+++|||.. |+++..|.+|++.|.++.+++ -.+++|
T Consensus 135 d~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~G 214 (825)
T KOG0267|consen 135 DLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPG 214 (825)
T ss_pred cceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccC
Confidence 9999999 578999999999888876 4689999999999999999976 999999999999999998544 467899
Q ss_pred cCCCceeeeeccCC
Q 001123 515 ANHGGIRGWNVTSP 528 (1149)
Q Consensus 515 S~DgtIRlWdl~sp 528 (1149)
|.|++||+||+++.
T Consensus 215 s~d~tv~f~dletf 228 (825)
T KOG0267|consen 215 SSDRTVRFWDLETF 228 (825)
T ss_pred CCCceeeeecccee
Confidence 99999999998753
No 135
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.62 E-value=1.1e-12 Score=149.39 Aligned_cols=332 Identities=18% Similarity=0.215 Sum_probs=207.8
Q ss_pred ccccccCCCCCcccc-------CCCCccccccceeEEEEEee-CCeEEEeCCCCEEEEeCCCCCCCCccccccccCCCCC
Q 001123 107 VRAALHPARPPSLEV-------KPHPLRETQIGCFLRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGE 178 (1149)
Q Consensus 107 ~~~~~~~~~p~~l~~-------~~~pl~e~~~~~~l~~l~~~-~~~l~ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d 178 (1149)
.+.+|+-.+|+.|.| +.-|.+.++-+.++.+.-.. .+.+.+.+-+.+.+|+.+++...+. +|+
T Consensus 170 ~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~---~~~------ 240 (626)
T KOG2106|consen 170 LLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKR---QGI------ 240 (626)
T ss_pred eEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEE---eec------
Confidence 677888888886664 22233333332333222222 4555556778899999987765443 111
Q ss_pred CCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEE
Q 001123 179 DGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSG 258 (1149)
Q Consensus 179 ~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SG 258 (1149)
|.. -. ..-|+|+.|.++|. ++||.++|.|-+|+..+.+ -..+-.+|.+.|.+++.-.+|+|+||
T Consensus 241 -----fek-~e-kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~--------~~k~~~aH~ggv~~L~~lr~GtllSG 304 (626)
T KOG2106|consen 241 -----FEK-RE-KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNR--------ISKQVHAHDGGVFSLCMLRDGTLLSG 304 (626)
T ss_pred -----ccc-cc-ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCce--------EEeEeeecCCceEEEEEecCccEeec
Confidence 211 11 45799999999886 5699999999999986643 23344499999999999999999999
Q ss_pred ECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEE
Q 001123 259 SEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWD 338 (1149)
Q Consensus 259 S~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD 338 (1149)
+.|+.|-+|| ....+.......+ + .+.++.++-+..+ .++.-+.+.|-.=.
T Consensus 305 gKDRki~~Wd-~~y~k~r~~elPe-----------------~----------~G~iRtv~e~~~d-i~vGTtrN~iL~Gt 355 (626)
T KOG2106|consen 305 GKDRKIILWD-DNYRKLRETELPE-----------------Q----------FGPIRTVAEGKGD-ILVGTTRNFILQGT 355 (626)
T ss_pred CccceEEecc-ccccccccccCch-----------------h----------cCCeeEEecCCCc-EEEeeccceEEEee
Confidence 9999999999 3222211110000 0 1334444443333 33322233333333
Q ss_pred cCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeeccccc--
Q 001123 339 ARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFG-- 416 (1149)
Q Consensus 339 ~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~-- 416 (1149)
++++-.+-++ +|+.-...+ +..+...+.++...|...++|....+.
T Consensus 356 ~~~~f~~~v~-gh~delwgl-------------------------------a~hps~~q~~T~gqdk~v~lW~~~k~~wt 403 (626)
T KOG2106|consen 356 LENGFTLTVQ-GHGDELWGL-------------------------------ATHPSKNQLLTCGQDKHVRLWNDHKLEWT 403 (626)
T ss_pred ecCCceEEEE-ecccceeeE-------------------------------EcCCChhheeeccCcceEEEccCCceeEE
Confidence 3333222222 222221112 222333455666666666666522111
Q ss_pred -CCCCceEEEEEcCCCcEEEEeCCCeEEEEeCCCCeeEeeecCCccEEEEE--ecCCEEEEeecCcEEEEEeCC--Ccee
Q 001123 417 -DDNRRTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE--GNLL 491 (1149)
Q Consensus 417 -~~~~~V~ava~s~Dg~laSgs~DgtIrlWD~tG~~l~tl~gH~~~V~sls--~dG~~LaSGs~DGtIrlWD~~--G~~l 491 (1149)
--.....++.|.|.|.+|.|...|.-.+-|.+.+.+-++...+.+++++. ++|.+||.|+.|+.|+|+-++ |+..
T Consensus 404 ~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y 483 (626)
T KOG2106|consen 404 KIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKY 483 (626)
T ss_pred EEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEE
Confidence 11235678889999999999999998899995454444444477888875 589999999999999999865 6543
Q ss_pred eeee-ccCCCeEEEE--ecCCeEEeecCCCceeeee
Q 001123 492 GGWV-AHSSPVIKMA--VGAGYIFTLANHGGIRGWN 524 (1149)
Q Consensus 492 ~~l~-gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWd 524 (1149)
.... -|-.+|+.|. .|++++.|-|.|--|-.|.
T Consensus 484 ~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 484 SRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 3222 2337888887 5999999999999999993
No 136
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.61 E-value=3.5e-14 Score=165.72 Aligned_cols=225 Identities=14% Similarity=0.092 Sum_probs=156.5
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCC---c-EEEEECCCcEEE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG---D-LWSGSEGGGIKI 266 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG---~-L~SGS~DgTIRV 266 (1149)
.-.+.|+++||+|+.||||..-|++||+++..- .......+|...|.|+.||-.- + |+|||.|+.|.|
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l--------~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV 530 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL--------EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHV 530 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehhh--------hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEE
Confidence 567899999999999999999999999998752 3355678999999999998532 3 789999999999
Q ss_pred EeCCCc-ceeeecCCCcceeeEEEeeecc-------------ccccc-ccccccee------eeecCCeEEEEEcCCCCE
Q 001123 267 WPWEAI-EKALSLKPEERHTAALIVERSY-------------IDLRS-HLSVNGFS------SILTSDIKNLLSDHSRAK 325 (1149)
Q Consensus 267 Wdl~t~-~~~~~l~~~~~~~~a~~~~~~~-------------~~l~~-~~~~~g~~------~~~~~dv~~las~~~~~~ 325 (1149)
+|+... ....++..+...+.++-...++ +-++. +....|.. .+....+..+..++....
T Consensus 531 ~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~ 610 (1080)
T KOG1408|consen 531 YDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKL 610 (1080)
T ss_pred EecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcce
Confidence 998642 1222333333333322111111 00000 00001111 111233455667777776
Q ss_pred EEEe-cCCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCC
Q 001123 326 VWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD 404 (1149)
Q Consensus 326 v~Sa-sd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d 404 (1149)
++++ .|..|||+|+.+|+..++|++.-.-
T Consensus 611 v~t~cQDrnirif~i~sgKq~k~FKgs~~~-------------------------------------------------- 640 (1080)
T KOG1408|consen 611 VVTVCQDRNIRIFDIESGKQVKSFKGSRDH-------------------------------------------------- 640 (1080)
T ss_pred EEEEecccceEEEeccccceeeeecccccC--------------------------------------------------
Confidence 6654 5778999999999988888752211
Q ss_pred cEEEEeecccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcE
Q 001123 405 AVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGI 480 (1149)
Q Consensus 405 ~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGt 480 (1149)
.+..-.|...|.|. |++.+.|+|+.++|. +|+|+.++.||...|+.+.| |-+.|++.+.||.
T Consensus 641 --------------eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgC 706 (1080)
T KOG1408|consen 641 --------------EGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGC 706 (1080)
T ss_pred --------------CCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCce
Confidence 01111233456664 889999999999999 99999999999999999876 6799999999999
Q ss_pred EEEEeCC
Q 001123 481 VQVLDLE 487 (1149)
Q Consensus 481 IrlWD~~ 487 (1149)
|-||-+.
T Consensus 707 IFvW~lp 713 (1080)
T KOG1408|consen 707 IFVWKLP 713 (1080)
T ss_pred EEEEECc
Confidence 9999964
No 137
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.7e-13 Score=160.72 Aligned_cols=236 Identities=18% Similarity=0.251 Sum_probs=167.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecC-CCCEEEEEEeCCCcEEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH-~~~VtsVafSpdG~L~SGS~DgTIRVWdl 269 (1149)
-++|.|||++.+.+.||-|=.||.|-+|++..+-+ ....+.|| ...|.+++|++.|+|+|.+.+|+|-=||+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~-------~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF-------LEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDL 97 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCce-------eeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEec
Confidence 46899999999999999999999999999987542 34567788 56899999999889999999999999999
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEe-cCCceEEEEcCCccEEEEE
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVF 348 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sa-sd~tIrLWD~~TG~~L~~l 348 (1149)
.++++......-+ +.+-.++..+.+..+.-+ .++.+...+...+.+..
T Consensus 98 ~~lk~~~~~d~~g-----------------------------g~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~-- 146 (691)
T KOG2048|consen 98 HTLKQKYNIDSNG-----------------------------GAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITY-- 146 (691)
T ss_pred ccCceeEEecCCC-----------------------------cceeEEEeCCccceEEeecCCceEEEEecCCceEEE--
Confidence 8876544322111 112222233332222222 22222222222111100
Q ss_pred ecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEc
Q 001123 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (1149)
Q Consensus 349 ~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s 428 (1149)
...|.....++-+|.+.
T Consensus 147 ---------------------------------------------------------------~r~l~rq~sRvLslsw~ 163 (691)
T KOG2048|consen 147 ---------------------------------------------------------------KRSLMRQKSRVLSLSWN 163 (691)
T ss_pred ---------------------------------------------------------------EeecccccceEEEEEec
Confidence 01133334677889999
Q ss_pred CCCc-EEEEeCCCeEEEEeC-CCCeeEeee-----cC---CccEEEEEe-cCCEEEEeecCcEEEEEeCC-Cceeeeeec
Q 001123 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDFQ-----YL---PFAVQCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVA 496 (1149)
Q Consensus 429 ~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~-----gH---~~~V~sls~-dG~~LaSGs~DGtIrlWD~~-G~~l~~l~g 496 (1149)
+++. |++||.||.|++||+ .|..+...+ .. ..-|+++.+ ....||+|++.|+|++||-. |.+++++..
T Consensus 164 ~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~ 243 (691)
T KOG2048|consen 164 PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSC 243 (691)
T ss_pred CCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhh
Confidence 9998 999999999999999 676554211 11 123566654 46789999999999999965 999999999
Q ss_pred cCCCeEEEEe--cCCeEEeecCCCceeeeeccC
Q 001123 497 HSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 497 H~~~V~sLa~--Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
|.+-|.+|+. ++.++++++.|+.|--.....
T Consensus 244 h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~ 276 (691)
T KOG2048|consen 244 HDADVLALAVADNEDRVFSAGVDPKIIQYSLTT 276 (691)
T ss_pred hhcceeEEEEcCCCCeEEEccCCCceEEEEecC
Confidence 9999999984 668999999999987776543
No 138
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.61 E-value=9.5e-15 Score=160.60 Aligned_cols=255 Identities=13% Similarity=0.108 Sum_probs=167.3
Q ss_pred EEeecCCCCEEEEEEeCCC--cEEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecC
Q 001123 235 LSWQAHRGPVLSLCISSYG--DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTS 312 (1149)
Q Consensus 235 ~~l~GH~~~VtsVafSpdG--~L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~ 312 (1149)
..|.||+++|.+++=.|.. .++|||.||.|||||+.+..+...+.++. +
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~-----------------------------G 110 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHE-----------------------------G 110 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeeccc-----------------------------C
Confidence 4568999999999999965 27999999999999998766555444332 3
Q ss_pred CeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEecCCceeeEEeeccCCC--ccccccceeeEEecCCCCccceeee
Q 001123 313 DIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPD--FAMEDEFKTKIVTSSKKDKAQSSFG 390 (1149)
Q Consensus 313 dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~--~~~~~~~~~~~~s~~~k~~~~~si~ 390 (1149)
-|+.++.+. ...+..+.|.+|++|-+.- ..++++-+++.+. .++.... ..+...-.+.+|.... +.+
T Consensus 111 ~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~---gIdh~~~~~~FaTcGe~i~IWD~~R-~~P----- 179 (433)
T KOG0268|consen 111 LVRGICVTQ-TSFFTVGDDKTVKQWKIDG-PPLHTILGKSVYL---GIDHHRKNSVFATCGEQIDIWDEQR-DNP----- 179 (433)
T ss_pred ceeeEEecc-cceEEecCCcceeeeeccC-Ccceeeecccccc---ccccccccccccccCceeeeccccc-CCc-----
Confidence 344455544 4455556678999998764 4666665544331 0000000 0000000011111110 000
Q ss_pred eeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc--EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe
Q 001123 391 FFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT 467 (1149)
Q Consensus 391 f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~--laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~ 467 (1149)
...+.-....+.++.++|-.. |++|.+|+.|.|+|+ ++..++.+.- ...-+.|++
T Consensus 180 ---------------------v~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~Isw 237 (433)
T KOG0268|consen 180 ---------------------VSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICW 237 (433)
T ss_pred ---------------------cceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceec
Confidence 112223345677888888765 678889999999999 7877655432 123345655
Q ss_pred --cCCEEEEeecCcEEEEEeCC--CceeeeeeccCCCeEEEE--ecCCeEEeecCCCceeeeeccCCCCCchhhhhhccc
Q 001123 468 --FGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAG 541 (1149)
Q Consensus 468 --dG~~LaSGs~DGtIrlWD~~--G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~sp~pld~~i~~~l~~ 541 (1149)
.+--+.+|+.|..++.+|.. ...+....+|.+.|.+|. |-|+-++|||.|.+|||+.+......|-.-...|
T Consensus 238 nPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRM-- 315 (433)
T KOG0268|consen 238 NPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRM-- 315 (433)
T ss_pred CccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhh--
Confidence 45678899999999999965 578999999999999998 6889999999999999999875444443333333
Q ss_pred cccceeeeeceEEEEEEEEeCC
Q 001123 542 KEFLYTRMENLKILAGTWNVGQ 563 (1149)
Q Consensus 542 re~~yt~~~~~~i~v~TWNv~~ 563 (1149)
-.|++.-|-+..
T Consensus 316 ----------q~V~~Vk~S~Ds 327 (433)
T KOG0268|consen 316 ----------QHVFCVKYSMDS 327 (433)
T ss_pred ----------heeeEEEEeccc
Confidence 378888887764
No 139
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.60 E-value=2.5e-14 Score=161.10 Aligned_cols=229 Identities=17% Similarity=0.148 Sum_probs=156.3
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCCCCCccceE------------------EeecCCCCEEEEEEeCCCc--EEEEECC
Q 001123 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVL------------------SWQAHRGPVLSLCISSYGD--LWSGSEG 261 (1149)
Q Consensus 202 dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~------------------~l~GH~~~VtsVafSpdG~--L~SGS~D 261 (1149)
.|.++|-|..|..|-|||+.=-. ...+.. .-+||+++|.+|++...-+ |+|||.|
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d-----~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD 265 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVD-----AVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSAD 265 (463)
T ss_pred CcceEEEeccCceeEEecccccc-----ccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCC
Confidence 36799999999999999985211 001111 1348999999999887654 8999999
Q ss_pred CcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCC-CEEEEec-CCceEEEEc
Q 001123 262 GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDA 339 (1149)
Q Consensus 262 gTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~-~~v~Sas-d~tIrLWD~ 339 (1149)
.||++||+.++++...+.-+ +.+|.++.+.+.. ..+.+++ |++++|.|.
T Consensus 266 ~TV~lWD~~~g~p~~s~~~~-----------------------------~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~ 316 (463)
T KOG0270|consen 266 KTVKLWDVDTGKPKSSITHH-----------------------------GKKVQTLEWHPYEPSVLLSGSYDGTVALKDC 316 (463)
T ss_pred ceEEEEEcCCCCcceehhhc-----------------------------CCceeEEEecCCCceEEEeccccceEEeeec
Confidence 99999999998876554322 2456666665443 3455555 678999998
Q ss_pred CCccE-EEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCC
Q 001123 340 RTREL-LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDD 418 (1149)
Q Consensus 340 ~TG~~-L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~ 418 (1149)
+.-.. -+. |+-
T Consensus 317 R~~~~s~~~-----------------------------wk~--------------------------------------- 328 (463)
T KOG0270|consen 317 RDPSNSGKE-----------------------------WKF--------------------------------------- 328 (463)
T ss_pred cCccccCce-----------------------------EEe---------------------------------------
Confidence 73110 000 110
Q ss_pred CCceEEEEEcCCC--cEEEEeCCCeEEEEeC--CCCeeEeeecCCccEEEEEecC---CEEEEeecCcEEEEEeCCCcee
Q 001123 419 NRRTEALTTSIDG--MIWTGGANGLLLQWDP--NGNRLQDFQYLPFAVQCLCTFG---SQIWVGYMNGIVQVLDLEGNLL 491 (1149)
Q Consensus 419 ~~~V~ava~s~Dg--~laSgs~DgtIrlWD~--tG~~l~tl~gH~~~V~sls~dG---~~LaSGs~DGtIrlWD~~G~~l 491 (1149)
...|+.|++.+.. .++++..||+|+-.|+ .|+++.++..|.++|.+|++++ .+|++++.|++|+||++.+..-
T Consensus 329 ~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 329 DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence 0224444544443 3567789999999999 5899999999999999998864 6999999999999999764332
Q ss_pred eeeeccCC---CeEEEEec---CCeEEeecCCCceeeeeccCCCCCc
Q 001123 492 GGWVAHSS---PVIKMAVG---AGYIFTLANHGGIRGWNVTSPGPLD 532 (1149)
Q Consensus 492 ~~l~gH~~---~V~sLa~D---g~~LaSgS~DgtIRlWdl~sp~pld 532 (1149)
..-..|.- ...+.+++ .-.++.|+.-+.+|+||+..-.|..
T Consensus 409 ~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 409 KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred cccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 22233432 23334433 3456777777789999987655543
No 140
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.59 E-value=1.1e-13 Score=156.56 Aligned_cols=202 Identities=17% Similarity=0.215 Sum_probs=148.1
Q ss_pred CCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc--EEEEECCCcEEEE
Q 001123 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIW 267 (1149)
Q Consensus 191 ~~~V~~lafs~d-g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~--L~SGS~DgTIRVW 267 (1149)
...=+.|+|++. ...|+||+.|++|++||+..... ..........+.||...|..|+|++-.. +.|++.|+.+.||
T Consensus 177 ~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~-~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iw 255 (422)
T KOG0264|consen 177 EKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESK-EDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIW 255 (422)
T ss_pred cccccccccccccceeEeeccCCCcEEEEecccccc-CCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEE
Confidence 444566888875 57899999999999999987542 1122344566899999999999998654 6799999999999
Q ss_pred eCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCC-EEEEec-CCceEEEEcCCc-cE
Q 001123 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTR-EL 344 (1149)
Q Consensus 268 dl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~-~v~Sas-d~tIrLWD~~TG-~~ 344 (1149)
|+.+. .... .+ ...+| +.++.|+++++-+. .+++++ |++|+|||++.= ++
T Consensus 256 D~R~~-~~~~-----~~-----------~~~ah----------~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~ 308 (422)
T KOG0264|consen 256 DTRSN-TSKP-----SH-----------SVKAH----------SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP 308 (422)
T ss_pred EcCCC-CCCC-----cc-----------ccccc----------CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccC
Confidence 99752 1100 00 01123 37899999987555 666766 899999998752 11
Q ss_pred EEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEE
Q 001123 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (1149)
Q Consensus 345 L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~a 424 (1149)
+.+ |.+|...|..
T Consensus 309 lh~-------------------------------------------------------------------~e~H~dev~~ 321 (422)
T KOG0264|consen 309 LHT-------------------------------------------------------------------FEGHEDEVFQ 321 (422)
T ss_pred cee-------------------------------------------------------------------ccCCCcceEE
Confidence 222 4455556667
Q ss_pred EEEcCCC--cEEEEeCCCeEEEEeCC--CC-------------eeEeeecCCccEEEEEec---CCEEEEeecCcEEEEE
Q 001123 425 LTTSIDG--MIWTGGANGLLLQWDPN--GN-------------RLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVL 484 (1149)
Q Consensus 425 va~s~Dg--~laSgs~DgtIrlWD~t--G~-------------~l~tl~gH~~~V~sls~d---G~~LaSGs~DGtIrlW 484 (1149)
|.+||+. .+||++.|+.+.+||+. |+ .+-+-.||...|..++++ .-.|+|.+.|+.++||
T Consensus 322 V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW 401 (422)
T KOG0264|consen 322 VEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIW 401 (422)
T ss_pred EEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEe
Confidence 7788874 37899999999999993 42 245667899999999875 4689999999999999
Q ss_pred eCC
Q 001123 485 DLE 487 (1149)
Q Consensus 485 D~~ 487 (1149)
...
T Consensus 402 ~~s 404 (422)
T KOG0264|consen 402 QMA 404 (422)
T ss_pred ecc
Confidence 965
No 141
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=2.4e-13 Score=142.93 Aligned_cols=246 Identities=15% Similarity=0.205 Sum_probs=173.6
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCC-CCC-ccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeC
Q 001123 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS-DDG-FGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (1149)
Q Consensus 192 ~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~-~~~-~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl 269 (1149)
..|.+-+++|.+++|+.|+.+|+|-+.++..-.-.+ ..+ -..+..+++|.++|+.|+|.. ..|+||+ ||.||-|.+
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d-~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD-DFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh-hheeecc-CceEEEeee
Confidence 456677889999999999999999999986421000 111 122445699999999999994 3588887 599999999
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCC-CCEEEEecCCceEEEEcCCccEEEEE
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAGFLSFALWDARTRELLKVF 348 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~-~~~v~Sasd~tIrLWD~~TG~~L~~l 348 (1149)
+..+.+...+. .+.+.. ...+-.++-.+++.+..++. +..+..++|..+.-||+++|+..++|
T Consensus 89 ~E~~es~~~K~-------------lwe~~~---P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 89 NEEEESLATKR-------------LWEVKI---PMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred hhhhhhccchh-------------hhhhcC---ccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEE
Confidence 76443322111 011100 00000123367888888754 45666777888999999999988888
Q ss_pred ecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEE-E
Q 001123 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT-T 427 (1149)
Q Consensus 349 ~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava-~ 427 (1149)
.+|...+ .+|+ -
T Consensus 153 rGHtDYv-------------------------------------------------------------------H~vv~R 165 (325)
T KOG0649|consen 153 RGHTDYV-------------------------------------------------------------------HSVVGR 165 (325)
T ss_pred cCCccee-------------------------------------------------------------------eeeeec
Confidence 7766542 2222 2
Q ss_pred cCCCcEEEEeCCCeEEEEeC-CCCeeEeeecC----------CccEEEEEecCCEEEEeecCcEEEEEeCC-Cc--eeee
Q 001123 428 SIDGMIWTGGANGLLLQWDP-NGNRLQDFQYL----------PFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GN--LLGG 493 (1149)
Q Consensus 428 s~Dg~laSgs~DgtIrlWD~-tG~~l~tl~gH----------~~~V~sls~dG~~LaSGs~DGtIrlWD~~-G~--~l~~ 493 (1149)
+..++|+||++|||+|+||. ++++++++... ..+|-+++.+..+|++|+.- .+.+|.+. .+ ++..
T Consensus 166 ~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp-~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 166 NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP-KLSLWHLRSSESTCVFP 244 (325)
T ss_pred ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC-ceeEEeccCCCceEEEe
Confidence 45678999999999999999 89999887542 23577888899999998754 68999975 33 4555
Q ss_pred eeccCCCeEEEEecCCeEEeecCCCceeeeecc
Q 001123 494 WVAHSSPVIKMAVGAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 494 l~gH~~~V~sLa~Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
+.+| |..+.++...+++++..+.|.-|.+.
T Consensus 245 ipa~---v~~v~F~~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 245 IPAR---VHLVDFVDDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred cccc---eeEeeeecceEEEeccccceeeeeec
Confidence 5554 56667888899999999999999864
No 142
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.58 E-value=1.5e-14 Score=171.21 Aligned_cols=227 Identities=17% Similarity=0.209 Sum_probs=158.5
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCC-c-EEEEECCCcEEEEeCCCc
Q 001123 196 CMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIWPWEAI 272 (1149)
Q Consensus 196 ~lafs~-dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG-~-L~SGS~DgTIRVWdl~t~ 272 (1149)
.|.+.. +..+|||++..|.|-+||+..-. .-+.+..|..|+..|+++.|++.- . |+|||.||+||+||+...
T Consensus 92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~-----rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~ 166 (839)
T KOG0269|consen 92 DVKWGQLYSNLIATCSTNGVISVWDLNKSI-----RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK 166 (839)
T ss_pred hcccccchhhhheeecCCCcEEEEecCccc-----cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc
Confidence 344442 46799999999999999997511 002345688999999999999854 2 789999999999999653
Q ss_pred ceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCC-CEEEEecC-CceEEEEcCCccEEEEEec
Q 001123 273 EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAGF-LSFALWDARTRELLKVFNI 350 (1149)
Q Consensus 273 ~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~-~~v~Sasd-~tIrLWD~~TG~~L~~l~~ 350 (1149)
....++. + .+..++.+.+++.. ...+++.| +.+++||++.-..
T Consensus 167 ~S~~t~~-------------------~----------nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r------ 211 (839)
T KOG0269|consen 167 KSKSTFR-------------------S----------NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR------ 211 (839)
T ss_pred ccccccc-------------------c----------cchhhhceeeccCCCceEEEecCCceEEEeeccCchh------
Confidence 2211111 0 11234455555543 35555554 5689999873110
Q ss_pred CCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCC
Q 001123 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID 430 (1149)
Q Consensus 351 ~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~D 430 (1149)
. .-.|..|.+.|.++-++|+
T Consensus 212 ---~---------------------------------------------------------~~k~~AH~GpV~c~nwhPn 231 (839)
T KOG0269|consen 212 ---C---------------------------------------------------------EKKLTAHNGPVLCLNWHPN 231 (839)
T ss_pred ---H---------------------------------------------------------HHHhhcccCceEEEeecCC
Confidence 0 0015678888999999998
Q ss_pred Cc-EEEEeCCCeEEEEeCCC-C--eeEeeecCCccEEEEEe--c-CCEEEEee--cCcEEEEEeCCCc--eeeeeeccCC
Q 001123 431 GM-IWTGGANGLLLQWDPNG-N--RLQDFQYLPFAVQCLCT--F-GSQIWVGY--MNGIVQVLDLEGN--LLGGWVAHSS 499 (1149)
Q Consensus 431 g~-laSgs~DgtIrlWD~tG-~--~l~tl~gH~~~V~sls~--d-G~~LaSGs--~DGtIrlWD~~G~--~l~~l~gH~~ 499 (1149)
+. ||||+.|++|+|||.++ + .+.++.. ..+|..|.+ . ...||+.+ .|-.|+|||+... +.+++..|++
T Consensus 232 r~~lATGGRDK~vkiWd~t~~~~~~~~tInT-iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~ 310 (839)
T KOG0269|consen 232 REWLATGGRDKMVKIWDMTDSRAKPKHTINT-IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD 310 (839)
T ss_pred CceeeecCCCccEEEEeccCCCccceeEEee-cceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCc
Confidence 65 89999999999999964 2 2333322 246777765 2 35777766 5789999998854 4689999999
Q ss_pred CeEEEEec---CCeEEeecCCCceeee
Q 001123 500 PVIKMAVG---AGYIFTLANHGGIRGW 523 (1149)
Q Consensus 500 ~V~sLa~D---g~~LaSgS~DgtIRlW 523 (1149)
.|..++++ ...++|+|.|++|-.=
T Consensus 311 ~vt~i~W~~~d~~~l~s~sKD~tv~qh 337 (839)
T KOG0269|consen 311 SVTGIAWDSGDRINLWSCSKDGTVLQH 337 (839)
T ss_pred cccceeccCCCceeeEeecCccHHHHh
Confidence 99999963 4678899999988543
No 143
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.57 E-value=8.1e-14 Score=149.69 Aligned_cols=240 Identities=17% Similarity=0.231 Sum_probs=158.6
Q ss_pred CCeEEE--eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCC---CCEEEEEeCCCeEE
Q 001123 142 EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA---SGVVWSGHRDGRIM 216 (1149)
Q Consensus 142 ~~~l~a--g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~d---g~~LaSGS~DGtIR 216 (1149)
+..+|+ +.|.++||||..|-+.... |. . .+.|++-++||= --+||.|-+|-.||
T Consensus 113 DtGmFtssSFDhtlKVWDtnTlQ~a~~-----------------F~--m--e~~VYshamSp~a~sHcLiA~gtr~~~Vr 171 (397)
T KOG4283|consen 113 DTGMFTSSSFDHTLKVWDTNTLQEAVD-----------------FK--M--EGKVYSHAMSPMAMSHCLIAAGTRDVQVR 171 (397)
T ss_pred cCceeecccccceEEEeecccceeeEE-----------------ee--c--CceeehhhcChhhhcceEEEEecCCCcEE
Confidence 566665 3499999999987664432 32 2 346777777764 35899999999999
Q ss_pred EEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc--EEEEECCCcEEEEeCCCc-ceeeecCCCcceeeEEEeeec
Q 001123 217 CWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAI-EKALSLKPEERHTAALIVERS 293 (1149)
Q Consensus 217 vWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~--L~SGS~DgTIRVWdl~t~-~~~~~l~~~~~~~~a~~~~~~ 293 (1149)
+=|+.+|.| .++|.||++.|.+|.+||... |+|||.||+||+||+... .+...+..+.. .
T Consensus 172 LCDi~SGs~--------sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~-k-------- 234 (397)
T KOG4283|consen 172 LCDIASGSF--------SHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT-K-------- 234 (397)
T ss_pred EEeccCCcc--------eeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccC-c--------
Confidence 999999875 788999999999999999886 799999999999999642 22222211110 0
Q ss_pred cccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccc
Q 001123 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (1149)
Q Consensus 294 ~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~ 372 (1149)
..+..-+..++.+.+..+++..++..+|+++ |+.+++|+...|+- ++...+.+.
T Consensus 235 ------~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n--tl~~~g~~~----------------- 289 (397)
T KOG4283|consen 235 ------RPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN--TLREFGPII----------------- 289 (397)
T ss_pred ------cCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcc--ccccccccc-----------------
Confidence 0011111224567889999999998888765 67899999998862 222222210
Q ss_pred eeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCcEEEEeCCCeEEEEeC-CCCe
Q 001123 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNR 451 (1149)
Q Consensus 373 ~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~laSgs~DgtIrlWD~-tG~~ 451 (1149)
...+ .++++.. -+++.+ .++--=.|+++.+.++ .|..
T Consensus 290 -----~n~~-----~~~~~~~-----~~~~s~---------------------------vfv~~p~~~~lall~~~sgs~ 327 (397)
T KOG4283|consen 290 -----HNQT-----TSFAVHI-----QSMDSD---------------------------VFVLFPNDGSLALLNLLEGSF 327 (397)
T ss_pred -----cccc-----ccceEEE-----eecccc---------------------------eEEEEecCCeEEEEEccCceE
Confidence 0000 0111110 001000 0111112366777887 7888
Q ss_pred eEeeecCCccEEEEEecC--CEEEEeecCcEEEEEeC
Q 001123 452 LQDFQYLPFAVQCLCTFG--SQIWVGYMNGIVQVLDL 486 (1149)
Q Consensus 452 l~tl~gH~~~V~sls~dG--~~LaSGs~DGtIrlWD~ 486 (1149)
++.+.+|-..|+|-.+.+ +...+|+.|+.|..|-.
T Consensus 328 ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 328 VRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 888888877788776644 78999999999999984
No 144
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=2.2e-13 Score=147.71 Aligned_cols=273 Identities=16% Similarity=0.161 Sum_probs=166.7
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCC
Q 001123 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (1149)
Q Consensus 192 ~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~ 270 (1149)
....|+.|++.|.+||.|..||.|.+||+.+-. ....|.||..||+|+++|+||+ |+|+|.|..|++||+.
T Consensus 24 ~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~--------iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~ 95 (405)
T KOG1273|consen 24 PLAECCQFSRWGDYLAVGCANGRVVIYDFDTFR--------IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLL 95 (405)
T ss_pred CccceEEeccCcceeeeeccCCcEEEEEccccc--------hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEecc
Confidence 347899999999999999999999999998733 3566889999999999999998 8999999999999997
Q ss_pred CcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEec
Q 001123 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNI 350 (1149)
Q Consensus 271 t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~~ 350 (1149)
.+.+...+.- ..++.+....|...-+++++--. ..-.+-++..+. -..|.
T Consensus 96 ~gs~l~rirf-------------------~spv~~~q~hp~k~n~~va~~~~---------~sp~vi~~s~~~-h~~Lp- 145 (405)
T KOG1273|consen 96 KGSPLKRIRF-------------------DSPVWGAQWHPRKRNKCVATIME---------ESPVVIDFSDPK-HSVLP- 145 (405)
T ss_pred CCCceeEEEc-------------------cCccceeeeccccCCeEEEEEec---------CCcEEEEecCCc-eeecc-
Confidence 6654332210 01111111112122222221110 000111111000 00000
Q ss_pred CCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccc------cCC-CCceE
Q 001123 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGF------GDD-NRRTE 423 (1149)
Q Consensus 351 ~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~------~~~-~~~V~ 423 (1149)
.+.+.... ...+...|.+++..+++|.+.|-..+.+-.++ .-. ...|.
T Consensus 146 -----------~d~d~dln--------------~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK 200 (405)
T KOG1273|consen 146 -----------KDDDGDLN--------------SSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIK 200 (405)
T ss_pred -----------CCCccccc--------------cccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeee
Confidence 00000000 00011135566788899998887766542222 111 24556
Q ss_pred EEEEcCCCc-EEEEeCCCeEEEEeCC-----CC--eeEeeecCCccEE-------EEEecCCEEEEeec-CcEEEEEeCC
Q 001123 424 ALTTSIDGM-IWTGGANGLLLQWDPN-----GN--RLQDFQYLPFAVQ-------CLCTFGSQIWVGYM-NGIVQVLDLE 487 (1149)
Q Consensus 424 ava~s~Dg~-laSgs~DgtIrlWD~t-----G~--~l~tl~gH~~~V~-------sls~dG~~LaSGs~-DGtIrlWD~~ 487 (1149)
.+-++..|. ++..++|++||.+++. |+ .+.-...-.+-|+ |++-+|.|+..|+. -..++||...
T Consensus 201 ~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~ 280 (405)
T KOG1273|consen 201 QIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKS 280 (405)
T ss_pred EEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecC
Confidence 677888876 7899999999999973 21 1110000112232 33457899998884 4689999976
Q ss_pred -CceeeeeeccCC-CeEEEEecCC--eEEeecCCCceeeeeccCC
Q 001123 488 -GNLLGGWVAHSS-PVIKMAVGAG--YIFTLANHGGIRGWNVTSP 528 (1149)
Q Consensus 488 -G~~l~~l~gH~~-~V~sLa~Dg~--~LaSgS~DgtIRlWdl~sp 528 (1149)
|.+++.|.|-.+ ....++++.- .|+|- ..|+|++|....+
T Consensus 281 ~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 281 IGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred CcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecc
Confidence 999999999884 5566765543 45555 6789999987653
No 145
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.9e-13 Score=158.02 Aligned_cols=290 Identities=14% Similarity=0.106 Sum_probs=175.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc--EEEEECCCcEEEEe
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWP 268 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~--L~SGS~DgTIRVWd 268 (1149)
++-|.|+..+|.|.+|||||.||+||+|.+.+|.| +.+++ -.+.|.||+|+|.+. ++.++.+.++-|=+
T Consensus 400 tg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc--------vr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 400 TGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC--------VRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred CCeEEEEEecCCcceeeecCCCCcEEEEEeecceE--------EEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 89999999999999999999999999999999986 55443 234799999999886 55666666666665
Q ss_pred CCCcceeeecC---------CCcceeeEEEeeeccccccccccccceee--eecCCeEEEEEcCCCCEEEEecC----Cc
Q 001123 269 WEAIEKALSLK---------PEERHTAALIVERSYIDLRSHLSVNGFSS--ILTSDIKNLLSDHSRAKVWSAGF----LS 333 (1149)
Q Consensus 269 l~t~~~~~~l~---------~~~~~~~a~~~~~~~~~l~~~~~~~g~~~--~~~~dv~~las~~~~~~v~Sasd----~t 333 (1149)
..-|....... .+....+++ ......-. ..--.++|. .....++.+..-..|..+++... ..
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~--~~W~~~~~-~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~ 547 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAV--VTWSRASL-DELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKS 547 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccc--eeechhhh-hhhccceEEEEecCCccceeeeecCCceEEEeccCCCcce
Confidence 43332111100 000000000 00000000 000011111 11122333333333444433221 22
Q ss_pred eEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEee-c
Q 001123 334 FALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-K 412 (1149)
Q Consensus 334 IrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~-~ 412 (1149)
|-|.++..+....-|.-. ...+....|.|..-.+++..+..++.-.- +
T Consensus 548 VliHQLSK~~sQ~PF~ks-------------------------------kG~vq~v~FHPs~p~lfVaTq~~vRiYdL~k 596 (733)
T KOG0650|consen 548 VLIHQLSKRKSQSPFRKS-------------------------------KGLVQRVKFHPSKPYLFVATQRSVRIYDLSK 596 (733)
T ss_pred EEEEecccccccCchhhc-------------------------------CCceeEEEecCCCceEEEEeccceEEEehhH
Confidence 444444332222112111 11222334554444444444444432221 1
Q ss_pred c----cccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC--CCCeeEeeecCCccEEEEEecC--CEEEEeecCcEEEE
Q 001123 413 G----GFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP--NGNRLQDFQYLPFAVQCLCTFG--SQIWVGYMNGIVQV 483 (1149)
Q Consensus 413 g----~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~--tG~~l~tl~gH~~~V~sls~dG--~~LaSGs~DGtIrl 483 (1149)
. .+......|..++++|.|- |+.|+.|+.+..+|+ ..+..+++..|...|.++++.+ ..++||+.||++.|
T Consensus 597 qelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~V 676 (733)
T KOG0650|consen 597 QELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIV 676 (733)
T ss_pred HHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEE
Confidence 1 2334456788899999775 999999999999999 4588999999999999999987 58999999999999
Q ss_pred Ee--CC----C----ceeeeeeccCCC----eEEEEecC--CeEEeecCCCceeee
Q 001123 484 LD--LE----G----NLLGGWVAHSSP----VIKMAVGA--GYIFTLANHGGIRGW 523 (1149)
Q Consensus 484 WD--~~----G----~~l~~l~gH~~~----V~sLa~Dg--~~LaSgS~DgtIRlW 523 (1149)
+- +- . -++..|+||... |....+.+ -+|+|+++||+||+|
T Consensus 677 fhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 677 FHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 85 11 1 247899999866 66666544 489999999999999
No 146
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=6.4e-13 Score=160.36 Aligned_cols=233 Identities=19% Similarity=0.189 Sum_probs=169.7
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~ 270 (1149)
+..-+.+.++++|..|.+++.||.||+|+..... .+..+..-|...|.+++.... .|++||.|+||.++...
T Consensus 13 t~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-------e~P~ti~~~g~~v~~ia~~s~-~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-------EEPETIDISGELVSSIACYSN-HFLTGSEQNTVLRYKFP 84 (933)
T ss_pred cCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-------cCCchhhccCceeEEEeeccc-ceEEeeccceEEEeeCC
Confidence 5667789999999999999999999999976531 111122227888988887663 69999999999999986
Q ss_pred CcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCc-eEEEEcCCccEEEEEe
Q 001123 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLS-FALWDARTRELLKVFN 349 (1149)
Q Consensus 271 t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~t-IrLWD~~TG~~L~~l~ 349 (1149)
.++....+ + ...-.+++++++.+|.+++.|++++ |++-++.+....++
T Consensus 85 s~~~~~iL-------~----------------------Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~-- 133 (933)
T KOG1274|consen 85 SGEEDTIL-------A----------------------RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKV-- 133 (933)
T ss_pred CCCcccee-------e----------------------eeeccceEEEEecCCcEEEeecCceeEEEEeccccchhee--
Confidence 64421111 0 1224567888999999999888764 88887665433222
Q ss_pred cCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcC
Q 001123 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (1149)
Q Consensus 350 ~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~ 429 (1149)
+.+|...|.+|.++|
T Consensus 134 -----------------------------------------------------------------lrgh~apVl~l~~~p 148 (933)
T KOG1274|consen 134 -----------------------------------------------------------------LRGHDAPVLQLSYDP 148 (933)
T ss_pred -----------------------------------------------------------------ecccCCceeeeeEcC
Confidence 345556677788888
Q ss_pred CCc-EEEEeCCCeEEEEeC-CCCeeEeeecC---C----ccEE-EEE--ecCCEEEEeecCcEEEEEeCC-Cceeeeeec
Q 001123 430 DGM-IWTGGANGLLLQWDP-NGNRLQDFQYL---P----FAVQ-CLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA 496 (1149)
Q Consensus 430 Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH---~----~~V~-sls--~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~g 496 (1149)
.+. ||+.+.||+|++||+ +|.+..++.+- . ..+. -++ ++|..++.-+.|++|++++.. +..+..|..
T Consensus 149 ~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~ 228 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD 228 (933)
T ss_pred CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc
Confidence 876 788899999999999 78888777652 1 2222 223 477888888899999999987 455555543
Q ss_pred --cCCCeEEEE--ecCCeEEeecCCCceeeeeccC
Q 001123 497 --HSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 497 --H~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
|...+..++ |.|+|||+++.||.|-|||+.+
T Consensus 229 ~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 229 KLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 334355555 7999999999999999999876
No 147
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2.4e-12 Score=139.62 Aligned_cols=271 Identities=10% Similarity=0.089 Sum_probs=157.6
Q ss_pred eEEEEEee--CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCcee--eeecCCceEEEEEcCC--CCEE
Q 001123 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKE--SVKGVSSVMCMVGDEA--SGVV 206 (1149)
Q Consensus 134 ~l~~l~~~--~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~--s~~G~~~V~~lafs~d--g~~L 206 (1149)
.+..+..+ ++++.+ ++|++|+|||......-.. .+. ..| .++|..+++.+- |+.|
T Consensus 15 lihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~-----------------~Ts~Wrah-~~Si~rV~WAhPEfGqvv 76 (361)
T KOG2445|consen 15 LIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWS-----------------CTSSWRAH-DGSIWRVVWAHPEFGQVV 76 (361)
T ss_pred eeeeeeecccCceeeeccCCCcEEEEeccCCCCceE-----------------EeeeEEec-CCcEEEEEecCccccceE
Confidence 34444444 778877 5699999999754332211 111 133 678888888643 8999
Q ss_pred EEEeCCCeEEEEECCCCCCC-CCCCccceEEeecCCCCEEEEEEeCCC---cEEEEECCCcEEEEeCCCcceeeecCCCc
Q 001123 207 WSGHRDGRIMCWKMNARLLD-SDDGFGEVLSWQAHRGPVLSLCISSYG---DLWSGSEGGGIKIWPWEAIEKALSLKPEE 282 (1149)
Q Consensus 207 aSGS~DGtIRvWdl~~g~~~-~~~~~~~~~~l~GH~~~VtsVafSpdG---~L~SGS~DgTIRVWdl~t~~~~~~l~~~~ 282 (1149)
|++|.|++++||.=...... .........++..-++.|+.|.|.|-- +|+++|.||++||++.-..-.+.
T Consensus 77 A~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs------ 150 (361)
T KOG2445|consen 77 ATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLS------ 150 (361)
T ss_pred EEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccc------
Confidence 99999999999975211100 112333455677889999999999963 27999999999999974311110
Q ss_pred ceeeEEEeeeccccccccccccceeeee---cCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEecCCceeeEEe
Q 001123 283 RHTAALIVERSYIDLRSHLSVNGFSSIL---TSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVD 359 (1149)
Q Consensus 283 ~~~~a~~~~~~~~~l~~~~~~~g~~~~~---~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~~~g~~~~~v~ 359 (1149)
.|.+...- ..+...+ ....-|+. |+... . +.+.+ +
T Consensus 151 -----------~W~Lq~Ei--~~~~~pp~~~~~~~~Cvs------------------Wn~sr-~-------~~p~i---A 188 (361)
T KOG2445|consen 151 -----------QWTLQHEI--QNVIDPPGKNKQPCFCVS------------------WNPSR-M-------HEPLI---A 188 (361)
T ss_pred -----------cchhhhhh--hhccCCcccccCcceEEe------------------ecccc-c-------cCceE---E
Confidence 01110000 0000000 01111222 33110 0 00000 0
Q ss_pred eccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCC-C----cEE
Q 001123 360 MSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID-G----MIW 434 (1149)
Q Consensus 360 ~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~D-g----~la 434 (1149)
...+.+.... -++.++. -.++.+++.....+.+|...|..++++|. | .||
T Consensus 189 vgs~e~a~~~--~~~~Iye-----------------------~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 189 VGSDEDAPHL--NKVKIYE-----------------------YNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred EEcccCCccc--cceEEEE-----------------------ecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence 0000000000 0000110 01122333333457788899999999987 4 378
Q ss_pred EEeCCCeEEEEeCCC---------------------CeeEeeecCCccEEEEEec--CCEEEEeecCcEEEEEeCC----
Q 001123 435 TGGANGLLLQWDPNG---------------------NRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE---- 487 (1149)
Q Consensus 435 Sgs~DgtIrlWD~tG---------------------~~l~tl~gH~~~V~sls~d--G~~LaSGs~DGtIrlWD~~---- 487 (1149)
+|+.|| |+||.+.+ +.+..+.+|++.|..+.++ |..|+|.+.||+||+|-..
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~ 322 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNL 322 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhh
Confidence 999999 99998743 1245577899999999875 9999999999999999843
Q ss_pred Cceeeeeec
Q 001123 488 GNLLGGWVA 496 (1149)
Q Consensus 488 G~~l~~l~g 496 (1149)
-+|+..+.+
T Consensus 323 ~kC~sv~~~ 331 (361)
T KOG2445|consen 323 WKCTSVLKA 331 (361)
T ss_pred heeeeEEec
Confidence 356555554
No 148
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=3.2e-14 Score=164.06 Aligned_cols=248 Identities=19% Similarity=0.302 Sum_probs=156.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
..-|.+++|.+-...|++|+.||+|++|++....-.....++++++|.||.+||.||+++++++ ++||+.||+||.|++
T Consensus 294 ~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~ 373 (577)
T KOG0642|consen 294 DDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNL 373 (577)
T ss_pred hhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeecc
Confidence 5567788999989999999999999999993322112345677899999999999999999997 899999999999987
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEe-cCCceEEEEcCCccEEEEE
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVF 348 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sa-sd~tIrLWD~~TG~~L~~l 348 (1149)
..- ..++..+-..+. + -.+.|| .+.+..++.+....++.++ +|+|+|+|+...... .+|
T Consensus 374 p~n-----~dp~ds~dp~vl---~-~~l~Gh----------tdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f 433 (577)
T KOG0642|consen 374 PPN-----QDPDDSYDPSVL---S-GTLLGH----------TDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTF 433 (577)
T ss_pred CCC-----CCcccccCcchh---c-cceecc----------ccceeeeeecccccceeeecCCceEEeeccCCcCc-ccc
Confidence 421 111111100000 0 001122 2445566777766777776 478999999765544 333
Q ss_pred ecC---CceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEE
Q 001123 349 NID---GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEAL 425 (1149)
Q Consensus 349 ~~~---g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~av 425 (1149)
+.. +.. .++++.. ++
T Consensus 434 ~~~~e~g~P-lsvd~~s-----------------s~-------------------------------------------- 451 (577)
T KOG0642|consen 434 GEPKEHGYP-LSVDRTS-----------------SR-------------------------------------------- 451 (577)
T ss_pred CCccccCCc-ceEeecc-----------------ch--------------------------------------------
Confidence 321 111 0111100 00
Q ss_pred EEcCCCcEEEEeCCCeEEE---EeC-CCCeeEeeecCC-------ccEEEE-Ee-cCCEEEEeecCcEEEEEeC-CCcee
Q 001123 426 TTSIDGMIWTGGANGLLLQ---WDP-NGNRLQDFQYLP-------FAVQCL-CT-FGSQIWVGYMNGIVQVLDL-EGNLL 491 (1149)
Q Consensus 426 a~s~Dg~laSgs~DgtIrl---WD~-tG~~l~tl~gH~-------~~V~sl-s~-dG~~LaSGs~DGtIrlWD~-~G~~l 491 (1149)
++-...+...+. .+. .+..++.+.... ..++-+ +. .+.+.+++..|+.|+++|. .|+++
T Consensus 452 -------~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l 524 (577)
T KOG0642|consen 452 -------PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL 524 (577)
T ss_pred -------hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccc
Confidence 000000011111 111 122222221100 112222 22 4678889999999999995 59999
Q ss_pred eeeeccCCCeEEEE--ecCCeEEeecCCCceeeeeccC
Q 001123 492 GGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 492 ~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
....+|...|.+++ +.|-+|++++.||.|++|.+..
T Consensus 525 ~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 525 HSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred hheeeccceecceeecCCCceEEeecCCceeehhhccc
Confidence 99999999999998 4677999999999999999754
No 149
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.54 E-value=1.3e-12 Score=146.60 Aligned_cols=257 Identities=12% Similarity=0.130 Sum_probs=188.4
Q ss_pred CeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001123 143 EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (1149)
Q Consensus 143 ~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~~LaSGS~DGtIRvWdl 220 (1149)
+.+.+ |.|+++-+.|....+.+.. +.| +-.|+.+.++++...++++|.|..||+|.+
T Consensus 232 ~~ilTGG~d~~av~~d~~s~q~l~~---------------------~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~ 290 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPSNQILAT---------------------LKGHTKKITSVKFHKDLDTVITASADEIIRVWSV 290 (506)
T ss_pred CcceecCCCCceEEEecchhhhhhh---------------------ccCcceEEEEEEeccchhheeecCCcceEEeecc
Confidence 33444 4577888888765554433 234 778999999999999999999999999998
Q ss_pred CCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccc
Q 001123 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRS 299 (1149)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~ 299 (1149)
.... +......|.++|+.+...|.|. |+++|.|++.-.-|.+++........+..
T Consensus 291 ~~~s--------~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s---------------- 346 (506)
T KOG0289|consen 291 PLSS--------EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETS---------------- 346 (506)
T ss_pred cccc--------CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccc----------------
Confidence 7643 2455678999999999999997 89999999999999987764432211100
Q ss_pred cccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEe
Q 001123 300 HLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVT 378 (1149)
Q Consensus 300 ~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s 378 (1149)
.-++.+.++-++|-.+..+. |+.+++||+.++.-+..|.+|..
T Consensus 347 -----------~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~------------------------- 390 (506)
T KOG0289|consen 347 -----------DVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG------------------------- 390 (506)
T ss_pred -----------cceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCC-------------------------
Confidence 01244566666665555544 56799999998876666655443
Q ss_pred cCCCCccceeeeeeccccceEeecCCcEEEEeecc------cc-cCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CC
Q 001123 379 SSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG------GF-GDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NG 449 (1149)
Q Consensus 379 ~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g------~~-~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG 449 (1149)
.+..+.|..+|-.+++++.|+..++|+.. ++ ......+.++.|.+.|+ ++.++.|=+|.+.+- +-
T Consensus 391 ------~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k 464 (506)
T KOG0289|consen 391 ------PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTK 464 (506)
T ss_pred ------ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccc
Confidence 34567888888889999999866667633 12 22334688899999887 677777777777775 32
Q ss_pred --CeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeC
Q 001123 450 --NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDL 486 (1149)
Q Consensus 450 --~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~ 486 (1149)
+++..+.-|.+..+++.+ .-++++++|.|..++++-+
T Consensus 465 ~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 465 SWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 678888888888888877 3689999999999988754
No 150
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.52 E-value=1.6e-13 Score=159.75 Aligned_cols=266 Identities=15% Similarity=0.222 Sum_probs=161.7
Q ss_pred EEEEEcCC---CCEEEEEeCCCeEEEEECCCCCCCCCCCccc--eEEeecCCCCEEEEEEeCCCc--EEEEECCCcEEEE
Q 001123 195 MCMVGDEA---SGVVWSGHRDGRIMCWKMNARLLDSDDGFGE--VLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIW 267 (1149)
Q Consensus 195 ~~lafs~d---g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~--~~~l~GH~~~VtsVafSpdG~--L~SGS~DgTIRVW 267 (1149)
.+..|++. ..+||-+-.||.|+++|...-.- + .++ ...|.+|.++|..+++.| |+ |+|+|.|.|||+|
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~f---r-~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~W 127 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVF---R-LEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPW 127 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhc---c-hhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeee
Confidence 34555543 57899999999999999865321 1 011 245789999999999999 75 8999999999999
Q ss_pred eCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEE-Eec-CCceEEEEcCCccEE
Q 001123 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAG-FLSFALWDARTRELL 345 (1149)
Q Consensus 268 dl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~-Sas-d~tIrLWD~~TG~~L 345 (1149)
|+++...... . + ..+|. +.++.+++.+.+..|+ +++ |+.|.|||++-...
T Consensus 128 dvk~s~l~G~------~---~--------~~GH~----------~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~- 179 (720)
T KOG0321|consen 128 DVKTSRLVGG------R---L--------NLGHT----------GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGV- 179 (720)
T ss_pred eeccceeecc------e---e--------ecccc----------cccchhhhccCCCcceeeccCCCcEEEEEEeccch-
Confidence 9976442110 0 0 01222 4566667666555444 333 67899999864321
Q ss_pred EEEec-CCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEE-eecccccCCCCceE
Q 001123 346 KVFNI-DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRV-AAKGGFGDDNRRTE 423 (1149)
Q Consensus 346 ~~l~~-~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv-~~~g~~~~~~~~V~ 423 (1149)
..+.. +..+..+....+ ...+ |..+. ++++ +...++ ...|+
T Consensus 180 d~~e~~~~~~~~~~n~~p------------------tpsk--------p~~kr--------~~k~kA~s~ti---~ssvT 222 (720)
T KOG0321|consen 180 DALEEFDNRIYGRHNTAP------------------TPSK--------PLKKR--------IRKWKAASNTI---FSSVT 222 (720)
T ss_pred hhHHHHhhhhhccccCCC------------------CCCc--------hhhcc--------ccccccccCce---eeeeE
Confidence 11100 000000000000 0000 00000 0000 000001 12355
Q ss_pred EEEEcCCCcEEEEeC-CCeEEEEeC-CC------CeeEeee--cC---CccEEEEEec--CCEEEEeecCcEEEEEeCCC
Q 001123 424 ALTTSIDGMIWTGGA-NGLLLQWDP-NG------NRLQDFQ--YL---PFAVQCLCTF--GSQIWVGYMNGIVQVLDLEG 488 (1149)
Q Consensus 424 ava~s~Dg~laSgs~-DgtIrlWD~-tG------~~l~tl~--gH---~~~V~sls~d--G~~LaSGs~DGtIrlWD~~G 488 (1149)
.|.|-++..||++++ |++||+||+ +- +.++... .| ...+.++..| |.+|.+.+.|++|+.||+.+
T Consensus 223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s 302 (720)
T KOG0321|consen 223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRS 302 (720)
T ss_pred EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccc
Confidence 666777778998887 999999999 32 3333333 23 2245566665 89999999999999999653
Q ss_pred ---ceeeeeeccCCC---eEE-EEecCCeEEeecCCCceeeeeccCCCC
Q 001123 489 ---NLLGGWVAHSSP---VIK-MAVGAGYIFTLANHGGIRGWNVTSPGP 530 (1149)
Q Consensus 489 ---~~l~~l~gH~~~---V~s-La~Dg~~LaSgS~DgtIRlWdl~sp~p 530 (1149)
..+..+.||... |.+ +.+|+.+|+||+.|..+.+|.+.+|..
T Consensus 303 ~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~ 351 (720)
T KOG0321|consen 303 LSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA 351 (720)
T ss_pred cCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC
Confidence 456677776542 222 238999999999999999999987543
No 151
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.50 E-value=7e-14 Score=165.95 Aligned_cols=269 Identities=19% Similarity=0.201 Sum_probs=177.6
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
.++|+|++|+..|.+|++|+.|..+|||+++++.| ..++.||.+-|+.++.+.+.. ++++|.|..||+|.+
T Consensus 190 ~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~--------lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 190 RNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC--------LASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred hhheeeeeeccccceEeecCccceeeeeeccchhh--------hccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 78999999999999999999999999999999875 667899999999999998776 689999999999999
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEe
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~ 349 (1149)
.++.+...+ ++|. +.|..+++++-. .++.|+|+++||.+ -+.+..
T Consensus 262 ~~~~pvsvL-------------------rght----------gavtaiafsP~~---sss~dgt~~~wd~r-~~~~~y-- 306 (1113)
T KOG0644|consen 262 PDGAPVSVL-------------------RGHT----------GAVTAIAFSPRA---SSSDDGTCRIWDAR-LEPRIY-- 306 (1113)
T ss_pred CCCchHHHH-------------------hccc----------cceeeeccCccc---cCCCCCceEecccc-cccccc--
Confidence 876654333 3343 556667776643 44557899999987 111111
Q ss_pred cCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcC
Q 001123 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (1149)
Q Consensus 350 ~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~ 429 (1149)
.|.+....+ + .-+.++.|-..+....+|..++..+.+..-.+..+...+.-+..+.
T Consensus 307 -----------~prp~~~~~------------~-~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ss 362 (1113)
T KOG0644|consen 307 -----------VPRPLKFTE------------K-DLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSS 362 (1113)
T ss_pred -----------CCCCCCccc------------c-cceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccc
Confidence 111000000 0 0001111211222233444444333322111222222222233332
Q ss_pred C--CcEEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe---cCCEEEEeecCcEEEEEeC-CCceee-eeeccCCCe
Q 001123 430 D--GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDL-EGNLLG-GWVAHSSPV 501 (1149)
Q Consensus 430 D--g~laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~---dG~~LaSGs~DGtIrlWD~-~G~~l~-~l~gH~~~V 501 (1149)
| ...+++-.+--+.+|++ +|..++.+.+|.+.++.+.+ +.+...+++.||.+-|||+ +|..++ -+.||..-|
T Consensus 363 d~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~ 442 (1113)
T KOG0644|consen 363 DLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLV 442 (1113)
T ss_pred cccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceee
Confidence 2 22456667788999999 99999999999999888854 5567779999999999996 576543 446777666
Q ss_pred EEE-EecCCeEEeecCCCceeeeecc
Q 001123 502 IKM-AVGAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 502 ~sL-a~Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
.+- +.||+.++---..|.+.+-...
T Consensus 443 d~kFSqdgts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 443 DGKFSQDGTSIALSDDHGQLYILGTG 468 (1113)
T ss_pred ccccCCCCceEecCCCCCceEEeccC
Confidence 542 3688777766666777776654
No 152
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=1.1e-13 Score=170.47 Aligned_cols=242 Identities=16% Similarity=0.210 Sum_probs=179.1
Q ss_pred ceEEEEEcCCCC----EEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc--EEEEECCCcEEE
Q 001123 193 SVMCMVGDEASG----VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKI 266 (1149)
Q Consensus 193 ~V~~lafs~dg~----~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~--L~SGS~DgTIRV 266 (1149)
.=+.|+|.+-|. +||.|..||.|.+||...-. .......+.+..-|+|+|.++-|++.+. |+||+.||.|.|
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~--~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII--ANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhc--cCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 346788877654 59999999999999986521 1123344567788999999999999864 799999999999
Q ss_pred EeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCE-EEEecC-CceEEEEcCCccE
Q 001123 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAK-VWSAGF-LSFALWDARTREL 344 (1149)
Q Consensus 267 Wdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~-v~Sasd-~tIrLWD~~TG~~ 344 (1149)
||+...+...... ...+.++|++++....-.. ++|++. +.+-+||++..+.
T Consensus 144 WDlnn~~tP~~~~---------------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p 196 (1049)
T KOG0307|consen 144 WDLNKPETPFTPG---------------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP 196 (1049)
T ss_pred eccCCcCCCCCCC---------------------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc
Confidence 9997533211110 0113367888887665443 455554 4789999986543
Q ss_pred EEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEE
Q 001123 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (1149)
Q Consensus 345 L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~a 424 (1149)
+-.|..++. ...+..
T Consensus 197 ii~ls~~~~-----------------------------------------------------------------~~~~S~ 211 (1049)
T KOG0307|consen 197 IIKLSDTPG-----------------------------------------------------------------RMHCSV 211 (1049)
T ss_pred ccccccCCC-----------------------------------------------------------------ccceee
Confidence 332211100 012345
Q ss_pred EEEcCCC--cEEEEeCCC---eEEEEeC--CCCeeEeeecCCccEEEEEe---cCCEEEEeecCcEEEEEeCC-Cceeee
Q 001123 425 LTTSIDG--MIWTGGANG---LLLQWDP--NGNRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE-GNLLGG 493 (1149)
Q Consensus 425 va~s~Dg--~laSgs~Dg---tIrlWD~--tG~~l~tl~gH~~~V~sls~---dG~~LaSGs~DGtIrlWD~~-G~~l~~ 493 (1149)
|+++|+. +|++++.|. .|.+||+ ....++++++|...|.++++ |..+|+|.+.|+.|.+|+.+ |+.+..
T Consensus 212 l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~ 291 (1049)
T KOG0307|consen 212 LAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGE 291 (1049)
T ss_pred eeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeee
Confidence 6678875 477777754 6999999 46889999999999999976 45899999999999999986 899999
Q ss_pred eeccCCCeEEEEe---cCCeEEeecCCCceeeeeccCC
Q 001123 494 WVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVTSP 528 (1149)
Q Consensus 494 l~gH~~~V~sLa~---Dg~~LaSgS~DgtIRlWdl~sp 528 (1149)
+.....|+..+.+ ++..++.+|-||.|-|..+...
T Consensus 292 ~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 292 LPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred cCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 9998899999985 6668888999999999998753
No 153
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=3e-12 Score=154.66 Aligned_cols=249 Identities=16% Similarity=0.240 Sum_probs=176.3
Q ss_pred chhcccCCcCcccccccccccCCCCCccccCCCCccccccceeEEEEEeeCCeEEEe-CCCCEEEEeCCCCCCCCccccc
Q 001123 92 EYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAG-GENGLRVWNLKELYDESESDSV 170 (1149)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~pl~e~~~~~~l~~l~~~~~~l~ag-~D~tVrvWd~~~g~~~~~~~~~ 170 (1149)
|||=-+|..|.-|+ +....+.+.|+.+++ +|..+..+++..+.+.++ .+++|.++.+.++.....
T Consensus 26 efi~tcgsdg~ir~-~~~~sd~e~P~ti~~---------~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~i---- 91 (933)
T KOG1274|consen 26 EFICTCGSDGDIRK-WKTNSDEEEPETIDI---------SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTI---- 91 (933)
T ss_pred CEEEEecCCCceEE-eecCCcccCCchhhc---------cCceeEEEeecccceEEeeccceEEEeeCCCCCccce----
Confidence 48866666666443 444555577777774 677999999998888875 588999999886664322
Q ss_pred cccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEe
Q 001123 171 SVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCIS 250 (1149)
Q Consensus 171 ~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafS 250 (1149)
-++| +-++.+++|+.+|.++|-||.|-.||+-++.... ....++||.++|.+|.|+
T Consensus 92 ----------L~Rf------tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s--------~~~~lrgh~apVl~l~~~ 147 (933)
T KOG1274|consen 92 ----------LARF------TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS--------QEKVLRGHDAPVLQLSYD 147 (933)
T ss_pred ----------eeee------eccceEEEEecCCcEEEeecCceeEEEEeccccc--------hheeecccCCceeeeeEc
Confidence 1222 4578899999999999999999999999987643 367789999999999999
Q ss_pred CCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCC-EEEE
Q 001123 251 SYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWS 328 (1149)
Q Consensus 251 pdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~-~v~S 328 (1149)
|.+. |++.+-||+|++|+++++....++..-... +... .+.-+..+++.++++ .++-
T Consensus 148 p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~-------------------n~~~--~s~i~~~~aW~Pk~g~la~~ 206 (933)
T KOG1274|consen 148 PKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD-------------------NEFI--LSRICTRLAWHPKGGTLAVP 206 (933)
T ss_pred CCCCEEEEEecCceEEEEEcccchhhhhcccCCcc-------------------cccc--ccceeeeeeecCCCCeEEee
Confidence 9998 789999999999999887654443321110 0000 012234566777754 4555
Q ss_pred ecCCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEE
Q 001123 329 AGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRR 408 (1149)
Q Consensus 329 asd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~r 408 (1149)
+.+++|++++..+.+.+.+|..+.
T Consensus 207 ~~d~~Vkvy~r~~we~~f~Lr~~~-------------------------------------------------------- 230 (933)
T KOG1274|consen 207 PVDNTVKVYSRKGWELQFKLRDKL-------------------------------------------------------- 230 (933)
T ss_pred ccCCeEEEEccCCceeheeecccc--------------------------------------------------------
Confidence 678899999988777665553211
Q ss_pred EeecccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeCCCCeeEeeecCCccEEEEEe
Q 001123 409 VAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT 467 (1149)
Q Consensus 409 v~~~g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~tG~~l~tl~gH~~~V~sls~ 467 (1149)
+...+..+.++|.|+ ||+++.||.|-|||...-..+. -...|.++++
T Consensus 231 ---------~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~~~---~~~~Vc~~aw 278 (933)
T KOG1274|consen 231 ---------SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHERHE---FKRAVCCEAW 278 (933)
T ss_pred ---------cccceEEEEEcCCCcEEeeeccCCcEEEEecccchhcc---ccceeEEEec
Confidence 111245677999997 8999999999999994311111 1246777765
No 154
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.49 E-value=1.7e-11 Score=138.50 Aligned_cols=236 Identities=22% Similarity=0.355 Sum_probs=173.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCC-CEEEEEE-eCCCc-E-EE-EECCCcEE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG-PVLSLCI-SSYGD-L-WS-GSEGGGIK 265 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~-~VtsVaf-SpdG~-L-~S-GS~DgTIR 265 (1149)
...+.++.+++.+..+++++.|+.+++|+...+. .....+.++.. .+..+.+ ++++. + .. ++.|++++
T Consensus 65 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-------KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred cceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-------eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence 6789999999999999999999999999998753 23566777544 7888888 77776 3 34 34599999
Q ss_pred EEeCCC-cceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec--CCceEEEEcCCc
Q 001123 266 IWPWEA-IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTR 342 (1149)
Q Consensus 266 VWdl~t-~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas--d~tIrLWD~~TG 342 (1149)
+|+... ......+. .| ...+..+.+.+++..+++++ +..+++|++.++
T Consensus 138 ~~~~~~~~~~~~~~~-------------------~~----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (466)
T COG2319 138 LWDLSTPGKLIRTLE-------------------GH----------SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG 188 (466)
T ss_pred EEEecCCCeEEEEEe-------------------cC----------cccEEEEEECCCCCEEEecCCCCCceEEEEcCCC
Confidence 999965 22221111 11 14455667777776665554 678999999875
Q ss_pred cEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCce
Q 001123 343 ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (1149)
Q Consensus 343 ~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V 422 (1149)
..+..+.. |...+
T Consensus 189 ~~~~~~~~-------------------------------------------------------------------~~~~v 201 (466)
T COG2319 189 KPLSTLAG-------------------------------------------------------------------HTDPV 201 (466)
T ss_pred ceEEeecc-------------------------------------------------------------------CCCce
Confidence 55444432 33344
Q ss_pred EEEEEcCCCc-E-EEEeCCCeEEEEeC-CCCeeE-eeecCCcc-EEEEEecCCEEEEeecCcEEEEEeCC-C-ceeeeee
Q 001123 423 EALTTSIDGM-I-WTGGANGLLLQWDP-NGNRLQ-DFQYLPFA-VQCLCTFGSQIWVGYMNGIVQVLDLE-G-NLLGGWV 495 (1149)
Q Consensus 423 ~ava~s~Dg~-l-aSgs~DgtIrlWD~-tG~~l~-tl~gH~~~-V~sls~dG~~LaSGs~DGtIrlWD~~-G-~~l~~l~ 495 (1149)
.+++++|++. + ++++.|++|++||. .+.++. .+.+|... +.++++++.++++++.|+.+++||.. . ..+..+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 281 (466)
T COG2319 202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS 281 (466)
T ss_pred EEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEe
Confidence 5566667764 4 44589999999999 688888 78898877 55566778899999999999999976 2 3245558
Q ss_pred ccCCCeEEEEe--cCCeEEeecCCCceeeeeccCCC
Q 001123 496 AHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPG 529 (1149)
Q Consensus 496 gH~~~V~sLa~--Dg~~LaSgS~DgtIRlWdl~sp~ 529 (1149)
+|...|.++.. ++..+++++.|+++++|++....
T Consensus 282 ~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 282 GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK 317 (466)
T ss_pred cCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc
Confidence 99999999874 56888889999999999876543
No 155
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.48 E-value=1.2e-12 Score=152.08 Aligned_cols=263 Identities=14% Similarity=0.189 Sum_probs=192.9
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCC
Q 001123 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (1149)
Q Consensus 192 ~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~ 270 (1149)
..|..++|-|||..|+-+. |..+-++|.+.|. ...+|+||++.|++|++|.||+ ++||+.|+.|-+|+-.
T Consensus 13 hci~d~afkPDGsqL~lAA-g~rlliyD~ndG~--------llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k 83 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAA-GSRLLVYDTSDGT--------LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK 83 (1081)
T ss_pred cchheeEECCCCceEEEec-CCEEEEEeCCCcc--------cccccccccceEEEEEEccCCceeccCCCceeEEEeccc
Confidence 3678899999998777654 4468899998775 3778999999999999999998 6899999999999863
Q ss_pred CcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEec
Q 001123 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNI 350 (1149)
Q Consensus 271 t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~~ 350 (1149)
-.. .+. . +++..+.|+.+.+-...++|++-..+-+|........+- +
T Consensus 84 lEG-~Lk--------------------Y----------SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~-k- 130 (1081)
T KOG1538|consen 84 LEG-ILK--------------------Y----------SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKH-K- 130 (1081)
T ss_pred ccc-eee--------------------e----------ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhh-h-
Confidence 210 010 1 123567899999988888888777788898764332210 0
Q ss_pred CCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec-----c---cccCCCCce
Q 001123 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK-----G---GFGDDNRRT 422 (1149)
Q Consensus 351 ~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~-----g---~~~~~~~~V 422 (1149)
.. ..+.+-.+..+|...+.|..+|...+.+. + .-.+.+..|
T Consensus 131 --ss-----------------------------~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspi 179 (1081)
T KOG1538|consen 131 --SS-----------------------------SRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPI 179 (1081)
T ss_pred --hh-----------------------------eeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCc
Confidence 00 00011223344556667777776665541 1 123567788
Q ss_pred EEEEEcCCC------cEEEEeCCCeEEEEeCCCCeeEeeecCCccEEEEE--ecCCEEEEeecCcEEEEEeCCCceeeee
Q 001123 423 EALTTSIDG------MIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEGNLLGGW 494 (1149)
Q Consensus 423 ~ava~s~Dg------~laSgs~DgtIrlWD~tG~~l~tl~gH~~~V~sls--~dG~~LaSGs~DGtIrlWD~~G~~l~~l 494 (1149)
.+++++|.. .++......|+..+.+.|+.|..-+.-.-.-.|++ ++|.++..|+.|+.+.++-.+|-.+.++
T Consensus 180 wsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTv 259 (1081)
T KOG1538|consen 180 WSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTV 259 (1081)
T ss_pred eEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeec
Confidence 999988752 36788889999999999988764333222334665 4799999999999999999999998888
Q ss_pred eccCCCeEEEE--ecCCeEEeecCCCceeeeeccC
Q 001123 495 VAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 495 ~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
-....||++++ |++++++-|.-||||--+++..
T Consensus 260 g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 260 GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred cccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 77788999998 7999999999999999998853
No 156
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.48 E-value=8.1e-11 Score=132.94 Aligned_cols=269 Identities=23% Similarity=0.385 Sum_probs=180.4
Q ss_pred eEEEEEee--CCeEEE-eCCCCEEEEeCCCCC-CCCccccccccCCCCCCCCCCceeeeec-C-CceEEEEE-cCCCC-E
Q 001123 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELY-DESESDSVSVSKSKGEDGTAPFKESVKG-V-SSVMCMVG-DEASG-V 205 (1149)
Q Consensus 134 ~l~~l~~~--~~~l~a-g~D~tVrvWd~~~g~-~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~-~~V~~laf-s~dg~-~ 205 (1149)
.+..+... ...+.. +.|+.+.+|+...+. .... +.+ . ..+..+.+ ++++. .
T Consensus 67 ~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~ 125 (466)
T COG2319 67 SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKS---------------------LEGLHDSSVSKLALSSPDGNSI 125 (466)
T ss_pred eEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEE---------------------EeccCCCceeeEEEECCCcceE
Confidence 44444444 333333 459999999987654 2211 111 1 24555555 77777 5
Q ss_pred EEEEeC-CCeEEEEECCC-CCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEEC-CCcEEEEeCCCcceeeecCCC
Q 001123 206 VWSGHR-DGRIMCWKMNA-RLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSE-GGGIKIWPWEAIEKALSLKPE 281 (1149)
Q Consensus 206 LaSGS~-DGtIRvWdl~~-g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~-DgTIRVWdl~t~~~~~~l~~~ 281 (1149)
+...+. |+.+++|+... . .....+.+|...|.+++|+|++. +++++. |+++++|++.+......+..
T Consensus 126 ~~~~~~~d~~~~~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 196 (466)
T COG2319 126 LLASSSLDGTVKLWDLSTPG--------KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG- 196 (466)
T ss_pred EeccCCCCccEEEEEecCCC--------eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc-
Confidence 555444 99999999986 2 23667899999999999999997 777775 99999999976332222211
Q ss_pred cceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCC-EEEE-ecCCceEEEEcCCccEEE-EEecCCceeeEE
Q 001123 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWS-AGFLSFALWDARTRELLK-VFNIDGQIENRV 358 (1149)
Q Consensus 282 ~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~-~v~S-asd~tIrLWD~~TG~~L~-~l~~~g~~~~~v 358 (1149)
+...+.++...+++. .+.+ +.+++|++||..++.++. .+..+.
T Consensus 197 ----------------------------~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~------ 242 (466)
T COG2319 197 ----------------------------HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS------ 242 (466)
T ss_pred ----------------------------CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCC------
Confidence 114455666666655 4555 456789999887666555 222111
Q ss_pred eeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCC-cEEEEe
Q 001123 359 DMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGG 437 (1149)
Q Consensus 359 ~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg-~laSgs 437 (1149)
... ...+++++ .+++++
T Consensus 243 -------------------------------------------------------------~~~-~~~~~~~~~~~~~~~ 260 (466)
T COG2319 243 -------------------------------------------------------------DSV-VSSFSPDGSLLASGS 260 (466)
T ss_pred -------------------------------------------------------------cce-eEeECCCCCEEEEec
Confidence 111 00366666 467899
Q ss_pred CCCeEEEEeC-CCC-eeEeeecCCccEEEEEec--CCEEEEeecCcEEEEEeCC-Cceeeeee--ccCCCeEEEEe--cC
Q 001123 438 ANGLLLQWDP-NGN-RLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE-GNLLGGWV--AHSSPVIKMAV--GA 508 (1149)
Q Consensus 438 ~DgtIrlWD~-tG~-~l~tl~gH~~~V~sls~d--G~~LaSGs~DGtIrlWD~~-G~~l~~l~--gH~~~V~sLa~--Dg 508 (1149)
.|+++++||. ... ++..+.+|...|.++.+. +..+++++.|+.+++||.. +....... +|...|..+.. ++
T Consensus 261 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (466)
T COG2319 261 SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDG 340 (466)
T ss_pred CCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCC
Confidence 9999999999 333 356667888899988764 6888889999999999976 44444444 89888888875 22
Q ss_pred CeEEee-cCCCceeeeeccCC
Q 001123 509 GYIFTL-ANHGGIRGWNVTSP 528 (1149)
Q Consensus 509 ~~LaSg-S~DgtIRlWdl~sp 528 (1149)
..++.+ +.|+.+++|++...
T Consensus 341 ~~~~~~~~~d~~~~~~~~~~~ 361 (466)
T COG2319 341 SLLVSGGSDDGTIRLWDLRTG 361 (466)
T ss_pred CEEEEeecCCCcEEeeecCCC
Confidence 445555 78899999997653
No 157
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.46 E-value=6.6e-13 Score=157.58 Aligned_cols=216 Identities=15% Similarity=0.208 Sum_probs=151.4
Q ss_pred eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCC
Q 001123 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLD 226 (1149)
Q Consensus 148 g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~d-g~~LaSGS~DGtIRvWdl~~g~~~ 226 (1149)
+..|.|-+||+... .+. ..-..|.+ | ...|.++.|++. ..+|+|||+||+||+||+....
T Consensus 107 s~nG~i~vWdlnk~--~rn------------k~l~~f~E--H-~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~-- 167 (839)
T KOG0269|consen 107 STNGVISVWDLNKS--IRN------------KLLTVFNE--H-ERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK-- 167 (839)
T ss_pred cCCCcEEEEecCcc--ccc------------hhhhHhhh--h-ccceeeeeeccCCccEEEecCCCceEEEEeeeccc--
Confidence 45778999998631 111 00012333 4 789999999976 5899999999999999998754
Q ss_pred CCCCccceEEeecCCCCEEEEEEeCCC--cEEEEECCCcEEEEeCCCcc-eeeecCCCcceeeEEEeeeccccccccccc
Q 001123 227 SDDGFGEVLSWQAHRGPVLSLCISSYG--DLWSGSEGGGIKIWPWEAIE-KALSLKPEERHTAALIVERSYIDLRSHLSV 303 (1149)
Q Consensus 227 ~~~~~~~~~~l~GH~~~VtsVafSpdG--~L~SGS~DgTIRVWdl~t~~-~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~ 303 (1149)
-..++.+...+|..|+|+|.- .++|+.+.|.+++||+.... +.+.+ .+|
T Consensus 168 ------S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~-------------------~AH--- 219 (839)
T KOG0269|consen 168 ------SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKL-------------------TAH--- 219 (839)
T ss_pred ------ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHh-------------------hcc---
Confidence 256678899999999999853 38899999999999996521 11222 123
Q ss_pred cceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCC
Q 001123 304 NGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKK 382 (1149)
Q Consensus 304 ~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k 382 (1149)
.+.|.|+-..+++..|++++ |+.|+|||+.+++.-.....
T Consensus 220 -------~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI-------------------------------- 260 (839)
T KOG0269|consen 220 -------NGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI-------------------------------- 260 (839)
T ss_pred -------cCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE--------------------------------
Confidence 37788888899999999887 67899999876442111100
Q ss_pred CccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCC--cEEEEeC--CCeEEEEeCCC--CeeEeee
Q 001123 383 DKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG--MIWTGGA--NGLLLQWDPNG--NRLQDFQ 456 (1149)
Q Consensus 383 ~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg--~laSgs~--DgtIrlWD~tG--~~l~tl~ 456 (1149)
.....|..|.+-|+. .|++++. |-.|++||++. -+..++.
T Consensus 261 ----------------------------------nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~ 306 (839)
T KOG0269|consen 261 ----------------------------------NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFL 306 (839)
T ss_pred ----------------------------------eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeee
Confidence 001123334444443 2666654 77899999964 5668999
Q ss_pred cCCccEEEEEecC---CEEEEeecCcEEEE
Q 001123 457 YLPFAVQCLCTFG---SQIWVGYMNGIVQV 483 (1149)
Q Consensus 457 gH~~~V~sls~dG---~~LaSGs~DGtIrl 483 (1149)
.|+..+..+++++ ..+++++.||+|..
T Consensus 307 eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 307 EHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred ccCccccceeccCCCceeeEeecCccHHHH
Confidence 9999999998864 57778888877653
No 158
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.46 E-value=8.4e-12 Score=144.53 Aligned_cols=106 Identities=17% Similarity=0.227 Sum_probs=89.2
Q ss_pred eEEEEEcC--CCcEEEEeCCCeEEEEeC-C-C------CeeEeeecCCccEEEEEec---CCEEEEeecCcEEEEEeCC-
Q 001123 422 TEALTTSI--DGMIWTGGANGLLLQWDP-N-G------NRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE- 487 (1149)
Q Consensus 422 V~ava~s~--Dg~laSgs~DgtIrlWD~-t-G------~~l~tl~gH~~~V~sls~d---G~~LaSGs~DGtIrlWD~~- 487 (1149)
|..+.+.| +.+||.|+.||.|+||-+ + | ..-..+++|...|+++-+. ...|+++++|-||+|||+.
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 33444544 346999999999999998 3 3 2336788999999999874 5899999999999999976
Q ss_pred CceeeeeeccCCCeEEEE--ecCCeEEeecCCCceeeeeccC
Q 001123 488 GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 488 G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
++....|.||++.|.++| +||+.++|.+.||+||+++-.+
T Consensus 710 ~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 710 AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence 788889999999999999 6999999999999999998643
No 159
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.45 E-value=7.7e-12 Score=141.57 Aligned_cols=270 Identities=15% Similarity=0.122 Sum_probs=169.9
Q ss_pred CCceEEEEEcCCC--CEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc--EEEEECCCcEEE
Q 001123 191 VSSVMCMVGDEAS--GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKI 266 (1149)
Q Consensus 191 ~~~V~~lafs~dg--~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~--L~SGS~DgTIRV 266 (1149)
.+.|.|++|.|.. ++||+|..-|.|-+||+.+.. .....+.-+..|.++|.+|.|+|.+. ++|.|.|||||+
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~----~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE----KDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCC----CccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence 6789999999974 799999999999999996322 12233566889999999999999874 899999999999
Q ss_pred EeCCCcceeeecCC--CcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEe-cCCceEEEEcCCcc
Q 001123 267 WPWEAIEKALSLKP--EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRE 343 (1149)
Q Consensus 267 Wdl~t~~~~~~l~~--~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sa-sd~tIrLWD~~TG~ 343 (1149)
=|+++..-...+.. +..... .+-++.....+..+ ..+.+.+||.+++.
T Consensus 262 ~D~~~~i~e~v~s~~~d~~~fs-----------------------------~~d~~~e~~~vl~~~~~G~f~~iD~R~~~ 312 (498)
T KOG4328|consen 262 QDFEGNISEEVLSLDTDNIWFS-----------------------------SLDFSAESRSVLFGDNVGNFNVIDLRTDG 312 (498)
T ss_pred eeecchhhHHHhhcCccceeee-----------------------------eccccCCCccEEEeecccceEEEEeecCC
Confidence 99976332111111 100000 00111222223333 23568899998865
Q ss_pred E-EEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeeccc--------
Q 001123 344 L-LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG-------- 414 (1149)
Q Consensus 344 ~-L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~-------- 414 (1149)
- ...+..|.+-++.+++.|... ..+++++.|...++|+...
T Consensus 313 s~~~~~~lh~kKI~sv~~NP~~p------------------------------~~laT~s~D~T~kIWD~R~l~~K~sp~ 362 (498)
T KOG4328|consen 313 SEYENLRLHKKKITSVALNPVCP------------------------------WFLATASLDQTAKIWDLRQLRGKASPF 362 (498)
T ss_pred ccchhhhhhhcccceeecCCCCc------------------------------hheeecccCcceeeeehhhhcCCCCcc
Confidence 3 333333333334444443322 2345555566555665221
Q ss_pred --ccCCCCceEEEEEcCC-CcEEEEeCCCeEEEEeCC--C---CeeEeeecCCc----cEE---EE-EecCCEEEEeecC
Q 001123 415 --FGDDNRRTEALTTSID-GMIWTGGANGLLLQWDPN--G---NRLQDFQYLPF----AVQ---CL-CTFGSQIWVGYMN 478 (1149)
Q Consensus 415 --~~~~~~~V~ava~s~D-g~laSgs~DgtIrlWD~t--G---~~l~tl~gH~~----~V~---sl-s~dG~~LaSGs~D 478 (1149)
...|...|.++.|||+ |.|++.+.|..|||||.. + ..+.++ .|+. +++ +. .++-.+|++|-.-
T Consensus 363 lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I-~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~ 441 (498)
T KOG4328|consen 363 LSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI-PHNNRTGRWLTPFKAAWDPDYNLIVVGRYP 441 (498)
T ss_pred eecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee-eccCcccccccchhheeCCCccEEEEeccC
Confidence 2467778899999997 569999999999999983 2 233333 3332 233 22 2467899999999
Q ss_pred cEEEEEeCCC-ceeeeeeccCC-CeEEEE---ecCCeEEee-cCCCceeeee
Q 001123 479 GIVQVLDLEG-NLLGGWVAHSS-PVIKMA---VGAGYIFTL-ANHGGIRGWN 524 (1149)
Q Consensus 479 GtIrlWD~~G-~~l~~l~gH~~-~V~sLa---~Dg~~LaSg-S~DgtIRlWd 524 (1149)
..|-|+|-+| +.+..+..-.. .|.++. |=+..+++| +..|.|.||-
T Consensus 442 r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 442 RPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred cceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 9999999874 54565544333 455543 433334444 4677888875
No 160
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.44 E-value=3.8e-12 Score=143.69 Aligned_cols=262 Identities=16% Similarity=0.211 Sum_probs=160.1
Q ss_pred ccccCCCCCccccCCCCccccccceeEEEEEeeCCeEEEeC-CCCEEEEeCCCCCCCCccccccccC---C-CCCCCCCC
Q 001123 109 AALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSK---S-KGEDGTAP 183 (1149)
Q Consensus 109 ~~~~~~~p~~l~~~~~pl~e~~~~~~l~~l~~~~~~l~ag~-D~tVrvWd~~~g~~~~~~~~~~~~~---~-~~d~~~~~ 183 (1149)
+.+.|.-|-|+|=--+|+.+...| +.+..|. |..|-|||+.=...+-. -.-+|. + ..-.....
T Consensus 169 D~ilpafPLC~ewld~~~~~~~~g----------NyvAiGtmdp~IeIWDLDI~d~v~P--~~~LGs~~sk~~~k~~k~~ 236 (463)
T KOG0270|consen 169 DFILPAFPLCIEWLDHGSKSGGAG----------NYVAIGTMDPEIEIWDLDIVDAVLP--CVTLGSKASKKKKKKGKRS 236 (463)
T ss_pred ceeccCcchhhhhhhcCCCCCCCc----------ceEEEeccCceeEEecccccccccc--ceeechhhhhhhhhhcccc
Confidence 455566666666433455554433 3333454 88899999873222111 011221 0 00000111
Q ss_pred ceeeeecCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCC-c-EEEEEC
Q 001123 184 FKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSE 260 (1149)
Q Consensus 184 ~~~s~~G~~~V~~lafs~d-g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG-~-L~SGS~ 260 (1149)
+..+.| +.+|++|+++.. -..|||||.|.||++||+++|.| ..++..|.+.|.++.|.|.. . |+|||.
T Consensus 237 ~~~~gH-Tdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p--------~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~ 307 (463)
T KOG0270|consen 237 NSASGH-TDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKP--------KSSITHHGKKVQTLEWHPYEPSVLLSGSY 307 (463)
T ss_pred cccccc-hHHHHHHHhccccceeEEecCCCceEEEEEcCCCCc--------ceehhhcCCceeEEEecCCCceEEEeccc
Confidence 222334 888999999876 47899999999999999999874 66777899999999999975 3 899999
Q ss_pred CCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCE--EEEecCCceEEEE
Q 001123 261 GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAK--VWSAGFLSFALWD 338 (1149)
Q Consensus 261 DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~--v~Sasd~tIrLWD 338 (1149)
|++|++-|.+....+. ..| ...+++--++..+.... +.+..|++++-.|
T Consensus 308 D~~V~l~D~R~~~~s~----------------~~w-------------k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D 358 (463)
T KOG0270|consen 308 DGTVALKDCRDPSNSG----------------KEW-------------KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFD 358 (463)
T ss_pred cceEEeeeccCccccC----------------ceE-------------EeccceEEEEecCCCceeEEEecCCceEEeee
Confidence 9999999986311100 000 11244555555443332 2233457888899
Q ss_pred cCC-ccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccC
Q 001123 339 ART-RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGD 417 (1149)
Q Consensus 339 ~~T-G~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~ 417 (1149)
++. |+++.+++.|...
T Consensus 359 ~R~~~~~vwt~~AHd~~--------------------------------------------------------------- 375 (463)
T KOG0270|consen 359 IRNPGKPVWTLKAHDDE--------------------------------------------------------------- 375 (463)
T ss_pred cCCCCCceeEEEeccCC---------------------------------------------------------------
Confidence 876 3566655544332
Q ss_pred CCCceEEEEEc--CCCcEEEEeCCCeEEEEeCCCCeeEeeecCC---ccEEEEEec---CCEEEEeecCcEEEEEeCC
Q 001123 418 DNRRTEALTTS--IDGMIWTGGANGLLLQWDPNGNRLQDFQYLP---FAVQCLCTF---GSQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 418 ~~~~V~ava~s--~Dg~laSgs~DgtIrlWD~tG~~l~tl~gH~---~~V~sls~d---G~~LaSGs~DGtIrlWD~~ 487 (1149)
|.++.++ ..|.+++++.|++|++|++.+..-+....|. +...|++++ .-.||.|+..+.++|||+.
T Consensus 376 ----ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 376 ----ISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred ----cceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecc
Confidence 2222222 2346889999999999999442222222222 124455553 4688899999999999964
No 161
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.44 E-value=1.5e-10 Score=132.13 Aligned_cols=305 Identities=15% Similarity=0.137 Sum_probs=184.8
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecC-CCCEEEEEEeCCCcEEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH-~~~VtsVafSpdG~L~SGS~DgTIRVWdl 269 (1149)
...|..++|.|.+..|.--.-.|.+-.|+.+++.+ .+..-.|++| +..|.||+|.++|+.+||-.+|+|-||+.
T Consensus 200 ne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l-----~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~ 274 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSL-----VKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSK 274 (626)
T ss_pred cceEEEEEeccCCCcEEEEeCCceEEEEEccCCce-----EEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeC
Confidence 34678899999876555556668899999988653 2333446666 56899999999999999999999999998
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEe
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~ 349 (1149)
.+..-..... +| .+.|-+|+.-.+|.+|..+-|..|.+||- .-+-++..+
T Consensus 275 ~~~~~~k~~~-------------------aH----------~ggv~~L~~lr~GtllSGgKDRki~~Wd~-~y~k~r~~e 324 (626)
T KOG2106|consen 275 GTNRISKQVH-------------------AH----------DGGVFSLCMLRDGTLLSGGKDRKIILWDD-NYRKLRETE 324 (626)
T ss_pred CCceEEeEee-------------------ec----------CCceEEEEEecCccEeecCccceEEeccc-ccccccccc
Confidence 6543222111 12 24455666656555444233678999992 211111111
Q ss_pred cCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcC
Q 001123 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (1149)
Q Consensus 350 ~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~ 429 (1149)
...+ .+. .+.+...+.+..+ + .....++-|....-. .....+|......++..|
T Consensus 325 lPe~-----------~G~------iRtv~e~~~di~v---G--TtrN~iL~Gt~~~~f----~~~v~gh~delwgla~hp 378 (626)
T KOG2106|consen 325 LPEQ-----------FGP------IRTVAEGKGDILV---G--TTRNFILQGTLENGF----TLTVQGHGDELWGLATHP 378 (626)
T ss_pred Cchh-----------cCC------eeEEecCCCcEEE---e--eccceEEEeeecCCc----eEEEEecccceeeEEcCC
Confidence 1000 000 0111111100000 0 000111122111100 001235555666777777
Q ss_pred C-CcEEEEeCCCeEEEEeCCCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCCCceeeeeeccCCCeEEEE-
Q 001123 430 D-GMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMA- 505 (1149)
Q Consensus 430 D-g~laSgs~DgtIrlWD~tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~G~~l~~l~gH~~~V~sLa- 505 (1149)
+ .++++++.|++++||+ .-+.+=+-. -.+++.|+.+ .| .||.|...|.--|.|.+.+.+-++.--+.++..++
T Consensus 379 s~~q~~T~gqdk~v~lW~-~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~y 455 (626)
T KOG2106|consen 379 SKNQLLTCGQDKHVRLWN-DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRY 455 (626)
T ss_pred ChhheeeccCcceEEEcc-CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEE
Confidence 6 5689999999999999 223322211 1246666655 57 99999999999999988654433333377787776
Q ss_pred -ecCCeEEeecCCCceeeeeccCCCCC--------chhhhhhccccccceeeeeceEEEEEEE
Q 001123 506 -VGAGYIFTLANHGGIRGWNVTSPGPL--------DSILCKELAGKEFLYTRMENLKILAGTW 559 (1149)
Q Consensus 506 -~Dg~~LaSgS~DgtIRlWdl~sp~pl--------d~~i~~~l~~re~~yt~~~~~~i~v~TW 559 (1149)
+||.+||-||.|+.|.++.+...+.. .+.|..--...+.+|........-+.=|
T Consensus 456 sp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 456 SPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred cCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEE
Confidence 79999999999999999998754432 1333334445566777777777777777
No 162
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=1.7e-11 Score=129.20 Aligned_cols=184 Identities=19% Similarity=0.263 Sum_probs=126.7
Q ss_pred cceeEEEEEeeCCeEEEeCCCCEEEEeCCCCCC-CCccccccccCCCCCCCCCCcee-eeecCCceEEEEEcCCCCEEEE
Q 001123 131 IGCFLRTIVCTEEQLWAGGENGLRVWNLKELYD-ESESDSVSVSKSKGEDGTAPFKE-SVKGVSSVMCMVGDEASGVVWS 208 (1149)
Q Consensus 131 ~~~~l~~l~~~~~~l~ag~D~tVrvWd~~~g~~-~~~~~~~~~~~~~~d~~~~~~~~-s~~G~~~V~~lafs~dg~~LaS 208 (1149)
+.-.+..++.++..|.+++||-|+=|--.+-.. ..+ .+.=+-..|... .+. ...|+++..+|...-|+.
T Consensus 61 hdgpiy~~~f~d~~Lls~gdG~V~gw~W~E~~es~~~--------K~lwe~~~P~~~~~~e-vPeINam~ldP~enSi~~ 131 (325)
T KOG0649|consen 61 HDGPIYYLAFHDDFLLSGGDGLVYGWEWNEEEESLAT--------KRLWEVKIPMQVDAVE-VPEINAMWLDPSENSILF 131 (325)
T ss_pred cCCCeeeeeeehhheeeccCceEEEeeehhhhhhccc--------hhhhhhcCccccCccc-CCccceeEeccCCCcEEE
Confidence 344667888899999999999999887554322 111 000001112111 112 457899999998777778
Q ss_pred EeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEE-eCCCcEEEEECCCcEEEEeCCCcceeeecCCCcceeeE
Q 001123 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCI-SSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (1149)
Q Consensus 209 GS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVaf-SpdG~L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a 287 (1149)
++-|+.|..||+++|+. ..+++||++.|.+|+- +..++++||++|||+||||+.|+++...+.+.... .
T Consensus 132 AgGD~~~y~~dlE~G~i--------~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~-~- 201 (325)
T KOG0649|consen 132 AGGDGVIYQVDLEDGRI--------QREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP-N- 201 (325)
T ss_pred ecCCeEEEEEEecCCEE--------EEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccCh-h-
Confidence 88999999999999873 5679999999999998 77788999999999999999998766544322110 0
Q ss_pred EEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEecCC
Q 001123 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDG 352 (1149)
Q Consensus 288 ~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~~~g 352 (1149)
.+|-+ . +.-+-+++.+ ..++++++...+.||.+++-++..+|...+
T Consensus 202 --------~lRp~---~------g~wigala~~--edWlvCGgGp~lslwhLrsse~t~vfpipa 247 (325)
T KOG0649|consen 202 --------LLRPD---W------GKWIGALAVN--EDWLVCGGGPKLSLWHLRSSESTCVFPIPA 247 (325)
T ss_pred --------hcCcc---c------CceeEEEecc--CceEEecCCCceeEEeccCCCceEEEeccc
Confidence 01101 1 1224455544 457888888889999999988888776443
No 163
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.44 E-value=2.9e-12 Score=141.99 Aligned_cols=238 Identities=19% Similarity=0.269 Sum_probs=157.4
Q ss_pred CCceEEEEEcCC--CCEEEEEeCCCeEEEEECCCCC--------CCCCCCccceEEeecCCCCEEEEEEeC--CCcEEEE
Q 001123 191 VSSVMCMVGDEA--SGVVWSGHRDGRIMCWKMNARL--------LDSDDGFGEVLSWQAHRGPVLSLCISS--YGDLWSG 258 (1149)
Q Consensus 191 ~~~V~~lafs~d--g~~LaSGS~DGtIRvWdl~~g~--------~~~~~~~~~~~~l~GH~~~VtsVafSp--dG~L~SG 258 (1149)
.+.++-+..++- ..+.||=|..|.|.||++..-. ......+.++.++.||.+-=+++.||| .|.|+||
T Consensus 151 ~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsG 230 (440)
T KOG0302|consen 151 YGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSG 230 (440)
T ss_pred ccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccC
Confidence 445556655553 4677788899999999985321 011245667889999999999999999 5669999
Q ss_pred ECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCC-CCEEEEec-CCceEE
Q 001123 259 SEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFAL 336 (1149)
Q Consensus 259 S~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~-~~~v~Sas-d~tIrL 336 (1149)
---+-|++|...++.=..--.+... | ...|..|..++. ...++||+ |++|||
T Consensus 231 Dc~~~I~lw~~~~g~W~vd~~Pf~g----------------H----------~~SVEDLqWSptE~~vfaScS~DgsIrI 284 (440)
T KOG0302|consen 231 DCVKGIHLWEPSTGSWKVDQRPFTG----------------H----------TKSVEDLQWSPTEDGVFASCSCDGSIRI 284 (440)
T ss_pred ccccceEeeeeccCceeecCccccc----------------c----------ccchhhhccCCccCceEEeeecCceEEE
Confidence 8889999999876431110001111 1 122333444443 33555654 789999
Q ss_pred EEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeeccccc
Q 001123 337 WDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFG 416 (1149)
Q Consensus 337 WD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~ 416 (1149)
||++.+.--..+ . ..
T Consensus 285 WDiRs~~~~~~~----------------------------~-------------------------------------~k 299 (440)
T KOG0302|consen 285 WDIRSGPKKAAV----------------------------S-------------------------------------TK 299 (440)
T ss_pred EEecCCCcccee----------------------------E-------------------------------------ee
Confidence 999876210000 0 11
Q ss_pred CCCCceEEEEEcCCC-cEEEEeCCCeEEEEeC-C---CCeeEeeecCCccEEEEEec---CCEEEEeecCcEEEEEeCC-
Q 001123 417 DDNRRTEALTTSIDG-MIWTGGANGLLLQWDP-N---GNRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE- 487 (1149)
Q Consensus 417 ~~~~~V~ava~s~Dg-~laSgs~DgtIrlWD~-t---G~~l~tl~gH~~~V~sls~d---G~~LaSGs~DGtIrlWD~~- 487 (1149)
.|...|+.+.++.+- .||+|+.||+++|||+ . |+.+.+|+.|..+|+||.+. ...|++++.|..|.|||+.
T Consensus 300 Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 300 AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 234456666666653 4899999999999999 2 68999999999999999874 6899999999999999953
Q ss_pred -Cc-------ee--------eeeeccCC--CeEEEEe---cCCeEEeecCCCc
Q 001123 488 -GN-------LL--------GGWVAHSS--PVIKMAV---GAGYIFTLANHGG 519 (1149)
Q Consensus 488 -G~-------~l--------~~l~gH~~--~V~sLa~---Dg~~LaSgS~Dgt 519 (1149)
-. -. +-|--|.+ .|..|.+ -+.+|+|.+.||.
T Consensus 380 E~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 380 EADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred cCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 10 01 12223432 4555553 3557888888873
No 164
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=5.4e-12 Score=146.19 Aligned_cols=264 Identities=14% Similarity=0.142 Sum_probs=163.4
Q ss_pred CCCccce--EEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeecccccccccccc
Q 001123 228 DDGFGEV--LSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (1149)
Q Consensus 228 ~~~~~~~--~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~ 304 (1149)
+++|... ..++||++.|.+|...|.|. |+|||.|||||||.+.|+.|..+..-
T Consensus 385 LrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~------------------------ 440 (733)
T KOG0650|consen 385 LRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF------------------------ 440 (733)
T ss_pred cCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee------------------------
Confidence 3555443 34799999999999999998 89999999999999999876544321
Q ss_pred ceeeeecCCeEEEEEcCCCC--EEEEecCCceEEEEcCCccEEEE---------EecCCceee-EEeeccCCCccccccc
Q 001123 305 GFSSILTSDIKNLLSDHSRA--KVWSAGFLSFALWDARTRELLKV---------FNIDGQIEN-RVDMSLLPDFAMEDEF 372 (1149)
Q Consensus 305 g~~~~~~~dv~~las~~~~~--~v~Sasd~tIrLWD~~TG~~L~~---------l~~~g~~~~-~v~~S~~~~~~~~~~~ 372 (1149)
.+.|.++++++... .|+.|-..++-|-+..-|..+.. ......... .+.++.......+.
T Consensus 441 ------d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~-- 512 (733)
T KOG0650|consen 441 ------DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEK-- 512 (733)
T ss_pred ------cceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhcc--
Confidence 13456666666543 22222223344444333321111 100000000 00111100000000
Q ss_pred eeeEEecCCCCccceeeeeeccccceEeecCCc-EEE--Eee------cccccCCCCceEEEEEcCCC-cEEEEeCCCeE
Q 001123 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRR--VAA------KGGFGDDNRRTEALTTSIDG-MIWTGGANGLL 442 (1149)
Q Consensus 373 ~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~-v~r--v~~------~g~~~~~~~~V~ava~s~Dg-~laSgs~DgtI 442 (1149)
.+++. .++.+.+..+.+..+|.-+++-..++ ..+ ++. ...|....+.+.++.|.|.. +++.++ ...|
T Consensus 513 ~v~~~--I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~v 589 (733)
T KOG0650|consen 513 GVCIV--IKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSV 589 (733)
T ss_pred ceEEE--EecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccce
Confidence 01111 12223444555555555444333222 111 121 12454555678888998875 455554 4579
Q ss_pred EEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC--CceeeeeeccCCCeEEEEecCC--eEEeec
Q 001123 443 LQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAVGAG--YIFTLA 515 (1149)
Q Consensus 443 rlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~--G~~l~~l~gH~~~V~sLa~Dg~--~LaSgS 515 (1149)
||||+ .++.+..+.....+|.+++. .|.-|+.|+.|+.+..+|++ .+..++++-|...|.+|++.++ +++|||
T Consensus 590 RiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~s 669 (733)
T KOG0650|consen 590 RIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGS 669 (733)
T ss_pred EEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeec
Confidence 99999 67777888777788888875 58999999999999999976 6789999999999999998887 478999
Q ss_pred CCCceeeeecc
Q 001123 516 NHGGIRGWNVT 526 (1149)
Q Consensus 516 ~DgtIRlWdl~ 526 (1149)
.|+++.|+--.
T Consensus 670 dDgtv~Vfhg~ 680 (733)
T KOG0650|consen 670 DDGTVIVFHGM 680 (733)
T ss_pred CCCcEEEEeee
Confidence 99999998643
No 165
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.42 E-value=9.2e-12 Score=138.62 Aligned_cols=201 Identities=17% Similarity=0.206 Sum_probs=144.6
Q ss_pred CCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc--EEEEECCCcEEEE
Q 001123 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIW 267 (1149)
Q Consensus 191 ~~~V~~lafs~d-g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~--L~SGS~DgTIRVW 267 (1149)
+++|+.++|+|- ...|||||.|.+|+||++-.+.+ .....+++..|.||+..|.-|+++|... |+|+|.|.+|.+|
T Consensus 81 t~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l-~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iW 159 (472)
T KOG0303|consen 81 TAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGL-TRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIW 159 (472)
T ss_pred cccccccccCccCCceeecCCCCceEEEEECCCccc-ccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEE
Confidence 999999999985 57899999999999999854332 3344456778999999999999999765 8899999999999
Q ss_pred eCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEE
Q 001123 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKV 347 (1149)
Q Consensus 268 dl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~ 347 (1149)
|+.|++..+++. +
T Consensus 160 nv~tgeali~l~-----------------------------------------h-------------------------- 172 (472)
T KOG0303|consen 160 NVGTGEALITLD-----------------------------------------H-------------------------- 172 (472)
T ss_pred eccCCceeeecC-----------------------------------------C--------------------------
Confidence 998776433221 0
Q ss_pred EecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEE
Q 001123 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (1149)
Q Consensus 348 l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~ 427 (1149)
...|.++.|
T Consensus 173 -----------------------------------------------------------------------pd~i~S~sf 181 (472)
T KOG0303|consen 173 -----------------------------------------------------------------------PDMVYSMSF 181 (472)
T ss_pred -----------------------------------------------------------------------CCeEEEEEe
Confidence 011122335
Q ss_pred cCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCcc--EEEEEe-cCCEEEEee---cCcEEEEEeCC----Cceeeeee
Q 001123 428 SIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFA--VQCLCT-FGSQIWVGY---MNGIVQVLDLE----GNLLGGWV 495 (1149)
Q Consensus 428 s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~--V~sls~-dG~~LaSGs---~DGtIrlWD~~----G~~l~~l~ 495 (1149)
+.||. +++++.|+.|||||. +|+.+..-.+|.+. ...+-. +|..+-+|- ++..|-|||.+ .-.+..+.
T Consensus 182 n~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD 261 (472)
T KOG0303|consen 182 NRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD 261 (472)
T ss_pred ccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec
Confidence 55554 789999999999999 89999888888763 444533 677554443 67899999954 22345565
Q ss_pred ccCCCeEEEE-ecCCeEEeec-CCCceeeeeccCCCC
Q 001123 496 AHSSPVIKMA-VGAGYIFTLA-NHGGIRGWNVTSPGP 530 (1149)
Q Consensus 496 gH~~~V~sLa-~Dg~~LaSgS-~DgtIRlWdl~sp~p 530 (1149)
.-++.+.=.- +|.+.|+-+| .|+.||-+.+....|
T Consensus 262 tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 262 TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 5444333332 4667777555 699999999876554
No 166
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.41 E-value=3e-11 Score=142.24 Aligned_cols=328 Identities=14% Similarity=0.159 Sum_probs=189.0
Q ss_pred CeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCC---EEEEEeCCCeEEE
Q 001123 143 EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASG---VVWSGHRDGRIMC 217 (1149)
Q Consensus 143 ~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~---~LaSGS~DGtIRv 217 (1149)
+.++| |....|-+||-.+... ...+.| ..+|+|+-+=|+.+ .++||+.|++|++
T Consensus 25 ~~~vafGa~~~Iav~dp~k~~i---------------------~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~l 83 (764)
T KOG1063|consen 25 GGLVAFGAGPAIAVADPEKILI---------------------VTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVIL 83 (764)
T ss_pred cceEEecCCceEEEeCccccee---------------------EEeccCCccceEEEEEcccccccceEEEccCCCcEEE
Confidence 33444 7788899999654311 112345 89999999988877 7999999999999
Q ss_pred EECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEE-ECCCcEEEEeCCCcceeeecCCCcceeeEEEeeecccc
Q 001123 218 WKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSG-SEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (1149)
Q Consensus 218 Wdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SG-S~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~ 296 (1149)
|.++. ..+..+.+++||...+.++ .....+.++ +.|+++.+||.+..+- ..+ .++..+...
T Consensus 84 W~l~~------~~~~~i~~~~g~~~~~~cv--~a~~~~~~~~~ad~~v~vw~~~~~e~-~~~-------~~~rf~~k~-- 145 (764)
T KOG1063|consen 84 WKLRD------EYLIKIYTIQGHCKECVCV--VARSSVMTCKAADGTVSVWDKQQDEV-FLL-------AVLRFEIKE-- 145 (764)
T ss_pred EEEee------hheEEEEeecCcceeEEEE--EeeeeEEEeeccCceEEEeecCCCce-eee-------hheehhhhh--
Confidence 99983 2235577889987766655 433334443 7899999999854331 000 000000000
Q ss_pred cccccccccee--eeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCcc--EEEEEecCCceeeEEeeccCCC--c---c
Q 001123 297 LRSHLSVNGFS--SILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRE--LLKVFNIDGQIENRVDMSLLPD--F---A 367 (1149)
Q Consensus 297 l~~~~~~~g~~--~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~--~L~~l~~~g~~~~~v~~S~~~~--~---~ 367 (1149)
.-..| .++..+.-.++.+.+. .-|.++.-.+++ .+..+.+|..++.+++|.-... . +
T Consensus 146 ------~ipLcL~~~~~~~~~lla~Ggs~--------~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS 211 (764)
T KOG1063|consen 146 ------AIPLCLAALKNNKTFLLACGGSK--------FVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLAS 211 (764)
T ss_pred ------HhhHHHhhhccCCcEEEEecCcc--------eEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEe
Confidence 00000 0111222222222221 123344333333 4456777877766666543222 1 1
Q ss_pred ccccceeeEEecC-----CCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCC-cEEEEeCCCe
Q 001123 368 MEDEFKTKIVTSS-----KKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANGL 441 (1149)
Q Consensus 368 ~~~~~~~~~~s~~-----~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg-~laSgs~Dgt 441 (1149)
.+++.-+++|.-. +........+...+ ....+-...-..++.....+.+|...|.++.++|++ .|+|+|+|.+
T Consensus 212 ~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~-~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDks 290 (764)
T KOG1063|consen 212 SSQDRYIRIWRIVLGDDEDSNEREDSLTTLSN-LPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKS 290 (764)
T ss_pred cCCceEEEEEEEEecCCccccccccccccccC-CceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcc
Confidence 1122223333211 00000001111111 000010000012222234567999999999999999 5999999999
Q ss_pred EEEEeC---CCC-----eeEeeecCCccEEEE--EecCCEEEEeecCcEEEEEeCC--C--ceeeeeeccCCCeEEEEe-
Q 001123 442 LLQWDP---NGN-----RLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE--G--NLLGGWVAHSSPVIKMAV- 506 (1149)
Q Consensus 442 IrlWD~---tG~-----~l~tl~gH~~~V~sl--s~dG~~LaSGs~DGtIrlWD~~--G--~~l~~l~gH~~~V~sLa~- 506 (1149)
+.+|-. +|- ++..+.|....-+.. +.++..+++-+.-|-.++|-.. + .......||.+.|..|+.
T Consensus 291 miiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~ 370 (764)
T KOG1063|consen 291 MIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWD 370 (764)
T ss_pred eEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeec
Confidence 999987 352 344444333334433 4467889999999999999832 2 345677899999999995
Q ss_pred -cCCeEEeecCCCceeeee
Q 001123 507 -GAGYIFTLANHGGIRGWN 524 (1149)
Q Consensus 507 -Dg~~LaSgS~DgtIRlWd 524 (1149)
.|.+|+|+|.|.|-|++-
T Consensus 371 psGeflLsvs~DQTTRlFa 389 (764)
T KOG1063|consen 371 PSGEFLLSVSLDQTTRLFA 389 (764)
T ss_pred CCCCEEEEeccccceeeec
Confidence 599999999999999975
No 167
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.40 E-value=1.6e-12 Score=144.60 Aligned_cols=109 Identities=20% Similarity=0.306 Sum_probs=85.1
Q ss_pred ccCCCCceEEEEEcCCC--cEEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeC-CC
Q 001123 415 FGDDNRRTEALTTSIDG--MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDL-EG 488 (1149)
Q Consensus 415 ~~~~~~~V~ava~s~Dg--~laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~-~G 488 (1149)
+.+|..+|..|+++|-. .|+|++.|.+|.|||+ +|+.+-++. |.+.|+++++ ||.+|++.+.|..|||||. +|
T Consensus 127 L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~ 205 (472)
T KOG0303|consen 127 LYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG 205 (472)
T ss_pred EeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCC
Confidence 34555566666666653 3789999999999999 999888887 9999999976 7999999999999999995 59
Q ss_pred ceeeeeeccCCCe--EEEE-ecCCeEEeec----CCCceeeeec
Q 001123 489 NLLGGWVAHSSPV--IKMA-VGAGYIFTLA----NHGGIRGWNV 525 (1149)
Q Consensus 489 ~~l~~l~gH~~~V--~sLa-~Dg~~LaSgS----~DgtIRlWdl 525 (1149)
+++..-.+|.+.= ..+- .+|. ++|.+ .+..+-+||.
T Consensus 206 ~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp 248 (472)
T KOG0303|consen 206 TVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDP 248 (472)
T ss_pred cEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCc
Confidence 9998889998743 3333 3666 55443 5778888873
No 168
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=1.6e-11 Score=139.05 Aligned_cols=236 Identities=17% Similarity=0.246 Sum_probs=170.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc--EEEEECCCcEEEEe
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWP 268 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~--L~SGS~DgTIRVWd 268 (1149)
.+.|.||.|.|...+|.+|+.||++|++.+++.. ++ .++++.=-.-||.+.+|.|+|+ ++++|.-.....||
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~----N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyD 286 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKV----NP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYD 286 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCcc----Ch--hheeeeeccCccceeeecCCCceEEEecccceEEEEee
Confidence 5789999999999999999999999999998754 22 2333322357999999999997 78999999999999
Q ss_pred CCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecC-CceEEEEcCCccEEEE
Q 001123 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKV 347 (1149)
Q Consensus 269 l~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd-~tIrLWD~~TG~~L~~ 347 (1149)
+++.+-. .+++.. ++ ....+.....++++..|+.++. +-|.|--+.|++++.+
T Consensus 287 le~ak~~-k~~~~~----------------g~---------e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s 340 (514)
T KOG2055|consen 287 LETAKVT-KLKPPY----------------GV---------EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITS 340 (514)
T ss_pred ccccccc-cccCCC----------------Cc---------ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhe
Confidence 9875422 111110 00 0011334445666666666553 5688989999988888
Q ss_pred EecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEE
Q 001123 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (1149)
Q Consensus 348 l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~ 427 (1149)
|+..|.+ ..+.|
T Consensus 341 ~KieG~v--------------------------------------------------------------------~~~~f 352 (514)
T KOG2055|consen 341 FKIEGVV--------------------------------------------------------------------SDFTF 352 (514)
T ss_pred eeeccEE--------------------------------------------------------------------eeEEE
Confidence 7655433 23345
Q ss_pred cCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCC---ccEEEEEecCCEEEEeecCcEEEEEeCC-----C--ceeeeee
Q 001123 428 SIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLP---FAVQCLCTFGSQIWVGYMNGIVQVLDLE-----G--NLLGGWV 495 (1149)
Q Consensus 428 s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~---~~V~sls~dG~~LaSGs~DGtIrlWD~~-----G--~~l~~l~ 495 (1149)
+.||+ |++.+.+|.|.+||+ ...|++.+.... +.-.|++.+|++||+||..|.|-|||.+ + +++..+.
T Consensus 353 sSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d 432 (514)
T KOG2055|consen 353 SSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD 432 (514)
T ss_pred ecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh
Confidence 56665 778888999999999 568999886531 1223556789999999999999999943 2 4667766
Q ss_pred ccCCCeEEEE--ecCCeEEeec--CCCceeeeecc
Q 001123 496 AHSSPVIKMA--VGAGYIFTLA--NHGGIRGWNVT 526 (1149)
Q Consensus 496 gH~~~V~sLa--~Dg~~LaSgS--~DgtIRlWdl~ 526 (1149)
-=+..|.+|+ +|++.|+-+| .++.+|+=.+-
T Consensus 433 NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvP 467 (514)
T KOG2055|consen 433 NLTTAITSLQFNHDAQILAIASRVKKNALRLVHVP 467 (514)
T ss_pred hhheeeeeeeeCcchhhhhhhhhccccceEEEecc
Confidence 6677888888 4888888666 57788876553
No 169
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.39 E-value=3e-11 Score=137.36 Aligned_cols=285 Identities=15% Similarity=0.142 Sum_probs=184.8
Q ss_pred CeEEEeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCC-CEEEEEeCCCeEEEEECC
Q 001123 143 EQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMN 221 (1149)
Q Consensus 143 ~~l~ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg-~~LaSGS~DGtIRvWdl~ 221 (1149)
+.++|+.-.++++||+.......+ -.+.+ + ...+.++-|+..+ -.++|-+.|..|++|.-.
T Consensus 4 Nl~~aS~gd~~kl~D~s~~~~~~~--------------~~~~t-~---~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~ 65 (673)
T KOG4378|consen 4 NLHVASTGDKTKLSDFSDLETKSE--------------YVHQT-A---EPGDFSFNWQRRNFLVVASMAGDKVMRIKEKD 65 (673)
T ss_pred ceeeeccCCceEEeecccccCccc--------------cccCC-C---CCcceeeeccccceEEEeecCCceeEEEeccc
Confidence 456777777899999875443322 00000 0 2236677777665 455677789999999866
Q ss_pred CCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeecccccccc
Q 001123 222 ARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSH 300 (1149)
Q Consensus 222 ~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~ 300 (1149)
+.. ........+.|. .-+||+...... ++||+..++|||||++....... +++|
T Consensus 66 g~~----~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~-------------------lkdh 120 (673)
T KOG4378|consen 66 GKT----PEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRF-------------------LKDH 120 (673)
T ss_pred CCC----Cccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhh-------------------ccCC
Confidence 532 111112223343 333444333333 79999999999999964221111 1223
Q ss_pred ccccceeeeecCCeEEEEEcCCCCEEEEecC-CceEEEEcCCccEEEEEecC-CceeeEEeeccCCCccccccceeeEEe
Q 001123 301 LSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNID-GQIENRVDMSLLPDFAMEDEFKTKIVT 378 (1149)
Q Consensus 301 ~~~~g~~~~~~~dv~~las~~~~~~v~Sasd-~tIrLWD~~TG~~L~~l~~~-g~~~~~v~~S~~~~~~~~~~~~~~~~s 378 (1149)
. +.|.++-....+..++++++ +.|.|-.+.|+..-..|..+ |+.+.-+.+++
T Consensus 121 ~----------stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~---------------- 174 (673)
T KOG4378|consen 121 Q----------STVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSP---------------- 174 (673)
T ss_pred c----------ceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeeccc----------------
Confidence 2 55777777777888998886 45999999999888888765 55532233332
Q ss_pred cCCCCccceeeeeeccccc-eEeecCCcEEEEeec-c------cccCCCCceEEEEEcCCCc--EEEEeCCCeEEEEeCC
Q 001123 379 SSKKDKAQSSFGFFQRSRN-AIMGAADAVRRVAAK-G------GFGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDPN 448 (1149)
Q Consensus 379 ~~~k~~~~~si~f~~~~~~-~i~G~~d~v~rv~~~-g------~~~~~~~~V~ava~s~Dg~--laSgs~DgtIrlWD~t 448 (1149)
..+. +.+.+.+|+..+|+. + ....|..+...|.|+|... +++-+.|..|.+||..
T Consensus 175 ---------------skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 175 ---------------SKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred ---------------ccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence 2222 234455666666652 1 2345666777788888754 6799999999999994
Q ss_pred C-CeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCCC--ceeeeeeccCCCeEEEEecCC-eEE
Q 001123 449 G-NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEG--NLLGGWVAHSSPVIKMAVGAG-YIF 512 (1149)
Q Consensus 449 G-~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~G--~~l~~l~gH~~~V~sLa~Dg~-~La 512 (1149)
. .....+.. ..+..++++ +|.+|+.|...|.|..||+.+ .++.++.+|...|++|++... .++
T Consensus 240 s~~s~~~l~y-~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~tvl 308 (673)
T KOG4378|consen 240 SQASTDRLTY-SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSPTVL 308 (673)
T ss_pred cccccceeee-cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecceee
Confidence 3 33344433 356666765 799999999999999999874 579999999999999996433 444
No 170
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.35 E-value=3.5e-10 Score=130.25 Aligned_cols=267 Identities=13% Similarity=0.189 Sum_probs=153.6
Q ss_pred eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEE-eCCCeEEEEECCC-CCC
Q 001123 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG-HRDGRIMCWKMNA-RLL 225 (1149)
Q Consensus 148 g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSG-S~DGtIRvWdl~~-g~~ 225 (1149)
+.+++|++|++.+...+.. ...+...+....++++|+++.|+.+ ..++.|.+|+++. +..
T Consensus 9 ~~~~~I~~~~~~~~g~l~~------------------~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l 70 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTL------------------LQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL 70 (330)
T ss_pred CCCCCEEEEEECCCCceee------------------eeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce
Confidence 4589999999964211111 1112112446678999999988665 4689999999963 221
Q ss_pred CCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEE-CCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccc
Q 001123 226 DSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSV 303 (1149)
Q Consensus 226 ~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS-~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~ 303 (1149)
...... .+.+....|+|+|+|+ |++++ .++.|.+|++++....... ... +.+.
T Consensus 71 ------~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~------~~~---------~~~~--- 125 (330)
T PRK11028 71 ------TFAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP------IQI---------IEGL--- 125 (330)
T ss_pred ------EEeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc------eee---------ccCC---
Confidence 111111 1233567899999998 66655 5899999998642111000 000 0000
Q ss_pred cceeeeecCCeEEEEEcCCCCEEEEe--cCCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCC
Q 001123 304 NGFSSILTSDIKNLLSDHSRAKVWSA--GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSK 381 (1149)
Q Consensus 304 ~g~~~~~~~dv~~las~~~~~~v~Sa--sd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~ 381 (1149)
.....+++++++..++.+ .++.|.+||+.+...+..... .. ...
T Consensus 126 --------~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~--~~----------------------~~~-- 171 (330)
T PRK11028 126 --------EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEP--AE----------------------VTT-- 171 (330)
T ss_pred --------CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCC--Cc----------------------eec--
Confidence 112344566777766544 357899999876322110000 00 000
Q ss_pred CCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEeC-CCeEEEEeCC---C--CeeEe
Q 001123 382 KDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGA-NGLLLQWDPN---G--NRLQD 454 (1149)
Q Consensus 382 k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs~-DgtIrlWD~t---G--~~l~t 454 (1149)
.. ......++++|||+ ++++.. +++|.+||++ | +.+++
T Consensus 172 -----------------~~------------------g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~ 216 (330)
T PRK11028 172 -----------------VE------------------GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQT 216 (330)
T ss_pred -----------------CC------------------CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEE
Confidence 00 01123467889987 556665 8999999993 3 33455
Q ss_pred eecCCc------cEE--EEEecCCEEEEeec-CcEEEEEeCC--CceeeeeeccCC---Ce--EEEEecCCeEEeecC-C
Q 001123 455 FQYLPF------AVQ--CLCTFGSQIWVGYM-NGIVQVLDLE--GNLLGGWVAHSS---PV--IKMAVGAGYIFTLAN-H 517 (1149)
Q Consensus 455 l~gH~~------~V~--sls~dG~~LaSGs~-DGtIrlWD~~--G~~l~~l~gH~~---~V--~sLa~Dg~~LaSgS~-D 517 (1149)
+..+.. ... .++++|++|+++.. +++|.+|+++ +.. .++.+|.. .. ..+.+||++|+++.. +
T Consensus 217 ~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~-~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~ 295 (330)
T PRK11028 217 LDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV-LSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS 295 (330)
T ss_pred EecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe-EEEeEEEeccccCCceEECCCCCEEEEEEccC
Confidence 433211 122 34578999999864 7899999974 322 22333322 12 234479999997764 8
Q ss_pred CceeeeeccC
Q 001123 518 GGIRGWNVTS 527 (1149)
Q Consensus 518 gtIRlWdl~s 527 (1149)
++|.+|++..
T Consensus 296 ~~v~v~~~~~ 305 (330)
T PRK11028 296 HHISVYEIDG 305 (330)
T ss_pred CcEEEEEEcC
Confidence 9999998753
No 171
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.35 E-value=8.4e-12 Score=136.41 Aligned_cols=249 Identities=14% Similarity=0.211 Sum_probs=163.4
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCC-c-EEEEECCCcEEEEeCCCcceeeecCC
Q 001123 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (1149)
Q Consensus 203 g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG-~-L~SGS~DgTIRVWdl~t~~~~~~l~~ 280 (1149)
+.+||.|+.-|.|||-|+.+++| ...+.||.++|+.+.|.|+. + |+|||.|.+||+|++++..+...+.+
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~--------~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQC--------SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred CeeEEeecceeEEEEEecchhhh--------ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc
Confidence 57899999999999999998774 66789999999999999986 3 68999999999999998877666644
Q ss_pred CcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEe
Q 001123 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVD 359 (1149)
Q Consensus 281 ~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~ 359 (1149)
.+. |. +.|..+-++.++.+++|++ |.++++|++...+.-..+.. +..
T Consensus 177 ~eg----------------Hr----------deVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~------s~~ 224 (385)
T KOG1034|consen 177 VEG----------------HR----------DEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLEL------SIT 224 (385)
T ss_pred ccc----------------cc----------CcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhh------hcc
Confidence 333 22 5567777888888999876 77899999986553322211 111
Q ss_pred eccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCcEEEEeCC
Q 001123 360 MSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGAN 439 (1149)
Q Consensus 360 ~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~laSgs~D 439 (1149)
+++.... .. +...+ .-+|+ . .+-.-|...|.|+.+-- ..++|-|-+
T Consensus 225 ~~~~~t~--~p------fpt~~--------~~fp~----f-------------st~diHrnyVDCvrw~g-d~ilSksce 270 (385)
T KOG1034|consen 225 YSPNKTT--RP------FPTPK--------THFPD----F-------------STTDIHRNYVDCVRWFG-DFILSKSCE 270 (385)
T ss_pred cCCCCcc--Cc------CCccc--------ccccc----c-------------cccccccchHHHHHHHh-hheeecccC
Confidence 1111110 00 00000 00000 0 00112333444444332 257787888
Q ss_pred CeEEEEeC-C-CC-------------eeEeeecCCccEEEE--Eec--CCEEEEeecCcEEEEEeCCC-c--eeeeeecc
Q 001123 440 GLLLQWDP-N-GN-------------RLQDFQYLPFAVQCL--CTF--GSQIWVGYMNGIVQVLDLEG-N--LLGGWVAH 497 (1149)
Q Consensus 440 gtIrlWD~-t-G~-------------~l~tl~gH~~~V~sl--s~d--G~~LaSGs~DGtIrlWD~~G-~--~l~~l~gH 497 (1149)
+.|..|-. . ++ .+.++......|+-+ ++| +++||.|...|.|.+||++. . ...++.-+
T Consensus 271 naI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s 350 (385)
T KOG1034|consen 271 NAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHS 350 (385)
T ss_pred ceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEec
Confidence 89999976 2 22 234455455566655 445 79999999999999999862 2 22333322
Q ss_pred C--CCeEEEE--ecCCeEEeecCCCceeeeec
Q 001123 498 S--SPVIKMA--VGAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 498 ~--~~V~sLa--~Dg~~LaSgS~DgtIRlWdl 525 (1149)
. ..|...+ .||..|+-...|++|.-||.
T Consensus 351 ~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 351 KSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred cccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 2 2454444 59999999999999999984
No 172
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=8.3e-11 Score=133.42 Aligned_cols=282 Identities=15% Similarity=0.211 Sum_probs=195.3
Q ss_pred CCccccc----cceeEEEEEee-CC--eEEEeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceE
Q 001123 124 HPLRETQ----IGCFLRTIVCT-EE--QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVM 195 (1149)
Q Consensus 124 ~pl~e~~----~~~~l~~l~~~-~~--~l~ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~ 195 (1149)
.-|++.. .-..++++..| .. .|.||-|+++|++-+..-.- ++..+++= ..||-
T Consensus 201 krlkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N-------------------~~lqS~~l~~fPi~ 261 (514)
T KOG2055|consen 201 KRLKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-------------------PKLQSIHLEKFPIQ 261 (514)
T ss_pred EeecccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccC-------------------hhheeeeeccCccc
Confidence 4555533 22456777777 23 33468899999999863221 12233332 67999
Q ss_pred EEEEcCCCC-EEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCC-CCEEEEEEeCCCc-EEEEECCCcEEEEeCCCc
Q 001123 196 CMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYGD-LWSGSEGGGIKIWPWEAI 272 (1149)
Q Consensus 196 ~lafs~dg~-~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~-~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~ 272 (1149)
|+.|.|+|. .|+++++-....+||+.+++. ..+..+.||. ..+....+||++. |+..+..|.|.|--..|+
T Consensus 262 ~a~f~p~G~~~i~~s~rrky~ysyDle~ak~------~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~ 335 (514)
T KOG2055|consen 262 KAEFAPNGHSVIFTSGRRKYLYSYDLETAKV------TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK 335 (514)
T ss_pred eeeecCCCceEEEecccceEEEEeecccccc------ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh
Confidence 999999998 999999999999999998663 2234456774 4677788899998 788999999999877665
Q ss_pred ceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEE-EecCCceEEEEcCCccEEEEEecC
Q 001123 273 EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAGFLSFALWDARTRELLKVFNID 351 (1149)
Q Consensus 273 ~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~-Sasd~tIrLWD~~TG~~L~~l~~~ 351 (1149)
+-...++. .+.+..++++.++..|| +++++.|.+||+++..|++.|..+
T Consensus 336 eli~s~Ki------------------------------eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~ 385 (514)
T KOG2055|consen 336 ELITSFKI------------------------------EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD 385 (514)
T ss_pred hhhheeee------------------------------ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec
Confidence 53322211 13455566666666665 456788999999999999888766
Q ss_pred CceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCC
Q 001123 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG 431 (1149)
Q Consensus 352 g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg 431 (1149)
|.+. -+.++.|.+|
T Consensus 386 G~v~------------------------------------------------------------------gts~~~S~ng 399 (514)
T KOG2055|consen 386 GSVH------------------------------------------------------------------GTSLCISLNG 399 (514)
T ss_pred Cccc------------------------------------------------------------------eeeeeecCCC
Confidence 6541 0123456666
Q ss_pred c-EEEEeCCCeEEEEeCC----C---CeeEeeecCCccEEEEEe--cCCEEEEee--cCcEEEEEeCC-Cceeeeeec--
Q 001123 432 M-IWTGGANGLLLQWDPN----G---NRLQDFQYLPFAVQCLCT--FGSQIWVGY--MNGIVQVLDLE-GNLLGGWVA-- 496 (1149)
Q Consensus 432 ~-laSgs~DgtIrlWD~t----G---~~l~tl~gH~~~V~sls~--dG~~LaSGs--~DGtIrlWD~~-G~~l~~l~g-- 496 (1149)
. +|+||..|.|-|||.+ + +++.++..-...|+++.| |++.||.+| .+..+||--+- -..-..|..
T Consensus 400 ~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n 479 (514)
T KOG2055|consen 400 SYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSN 479 (514)
T ss_pred ceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCC
Confidence 5 7889999999999962 1 566666666778888876 578887776 46678877653 222233332
Q ss_pred -cCCCeEEEE--ecCCeEEeecCCCceeeeecc
Q 001123 497 -HSSPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 497 -H~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
--+.|++|+ |.|.+++-|-.+|.+.+|.+.
T Consensus 480 ~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 480 TKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 234577887 577899999999999999874
No 173
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.35 E-value=4.5e-11 Score=130.40 Aligned_cols=252 Identities=14% Similarity=0.163 Sum_probs=171.9
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCC----CCccceEEeec-CCCCEEEEEEe-------CCCcE-EEEECC
Q 001123 195 MCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSD----DGFGEVLSWQA-HRGPVLSLCIS-------SYGDL-WSGSEG 261 (1149)
Q Consensus 195 ~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~----~~~~~~~~l~G-H~~~VtsVafS-------pdG~L-~SGS~D 261 (1149)
..+-+||||..|.+-+.|..+++|++-....... ..+....+++= -.+.|..-++= |+..| ++.|.|
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 3578999999999999999999999865332111 11111122211 12456666653 33345 688899
Q ss_pred CcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEc-C
Q 001123 262 GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDA-R 340 (1149)
Q Consensus 262 gTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~-~ 340 (1149)
.-|++||.-+|+......... |. .-. ....+|+++++|..|+++-..+||+.|+ +
T Consensus 133 ~PIh~wdaftG~lraSy~~yd-----------------h~--de~-----taAhsL~Fs~DGeqlfaGykrcirvFdt~R 188 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYD-----------------HQ--DEY-----TAAHSLQFSPDGEQLFAGYKRCIRVFDTSR 188 (406)
T ss_pred Cceeeeeccccccccchhhhh-----------------hH--Hhh-----hhheeEEecCCCCeEeecccceEEEeeccC
Confidence 999999998876433222110 00 000 1124688999999999988889999998 4
Q ss_pred CccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCC
Q 001123 341 TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR 420 (1149)
Q Consensus 341 TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~ 420 (1149)
.|.--.+. +...+. -.+...
T Consensus 189 pGr~c~vy-----------------------------~t~~~~-------------------------------k~gq~g 208 (406)
T KOG2919|consen 189 PGRDCPVY-----------------------------TTVTKG-------------------------------KFGQKG 208 (406)
T ss_pred CCCCCcch-----------------------------hhhhcc-------------------------------cccccc
Confidence 44311110 000000 011223
Q ss_pred ceEEEEEcCCC--cEEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeec-CcEEEEEeCC--Cceee
Q 001123 421 RTEALTTSIDG--MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYM-NGIVQVLDLE--GNLLG 492 (1149)
Q Consensus 421 ~V~ava~s~Dg--~laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~-DGtIrlWD~~--G~~l~ 492 (1149)
-+.+++++|-. .++.|+--.++-|+.- .+..++.+.+|.+.|+-+.+ ||.+|.+|+. |-.|-.||+. +..+-
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhh
Confidence 34567777753 4788998888888888 56889999999999998754 8999999994 7789999975 67888
Q ss_pred eeeccCC-CeE----EEEecCCeEEeecCCCceeeeeccCCCC
Q 001123 493 GWVAHSS-PVI----KMAVGAGYIFTLANHGGIRGWNVTSPGP 530 (1149)
Q Consensus 493 ~l~gH~~-~V~----sLa~Dg~~LaSgS~DgtIRlWdl~sp~p 530 (1149)
.|..|.+ .=. .+++++++|+||+.||.|++||+..++.
T Consensus 289 ~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 289 ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred hhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence 9999987 222 3457899999999999999999987554
No 174
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=3.2e-11 Score=132.62 Aligned_cols=258 Identities=10% Similarity=0.109 Sum_probs=167.6
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCC-C-c-EEEEECCCcEEEEeCCCcceeeecCC
Q 001123 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-G-D-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (1149)
Q Consensus 204 ~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpd-G-~-L~SGS~DgTIRVWdl~t~~~~~~l~~ 280 (1149)
..+|.+-..|.||++|..++. ....|+||.+.++.|.|..+ + . +.|||.||+||+||+.+......+.-
T Consensus 41 ~~vav~lSngsv~lyd~~tg~--------~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~ 112 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ--------LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISW 112 (376)
T ss_pred eeEEEEecCCeEEEEeccchh--------hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheec
Confidence 568899999999999999865 36678999999999999874 2 3 78999999999999977432221110
Q ss_pred CcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-----CCceEEEEcCCccE-EEEEecCCce
Q 001123 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-----FLSFALWDARTREL-LKVFNIDGQI 354 (1149)
Q Consensus 281 ~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-----d~tIrLWD~~TG~~-L~~l~~~g~~ 354 (1149)
. ++ +.....++..+.....++++. +-.+.+||++..+. ++.+.
T Consensus 113 ~-----------------~~---------~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~----- 161 (376)
T KOG1188|consen 113 T-----------------QQ---------SGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN----- 161 (376)
T ss_pred c-----------------CC---------CCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh-----
Confidence 0 00 011223444433344444442 34588999987654 43332
Q ss_pred eeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccc-cceEeecCCcEEEEeec-c--------cccCCCCceEE
Q 001123 355 ENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRS-RNAIMGAADAVRRVAAK-G--------GFGDDNRRTEA 424 (1149)
Q Consensus 355 ~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~-~~~i~G~~d~v~rv~~~-g--------~~~~~~~~V~a 424 (1149)
..|...++.+.|.|.. ..+++|+.||...+-+. . ....+...|..
T Consensus 162 -------------------------eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~ 216 (376)
T KOG1188|consen 162 -------------------------ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHL 216 (376)
T ss_pred -------------------------hhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeee
Confidence 1122344455666653 45788999998777541 1 22344567888
Q ss_pred EEEcCCC--cEEEEeCCCeEEEEeC-CCCeeEeeecC-------------CccEEEEEe-cCCEEEEeec-CcEEEEEe-
Q 001123 425 LTTSIDG--MIWTGGANGLLLQWDP-NGNRLQDFQYL-------------PFAVQCLCT-FGSQIWVGYM-NGIVQVLD- 485 (1149)
Q Consensus 425 va~s~Dg--~laSgs~DgtIrlWD~-tG~~l~tl~gH-------------~~~V~sls~-dG~~LaSGs~-DGtIrlWD- 485 (1149)
+.|..++ +|+.-+..++..+|++ .|.+...+... .+-|.+.++ ++...+.++. .++..++-
T Consensus 217 igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~ 296 (376)
T KOG1188|consen 217 IGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPL 296 (376)
T ss_pred eeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEe
Confidence 9999888 6888889999999999 67655444321 122444444 3444444433 45555553
Q ss_pred --CC----Cceeeeeec-cCCCeEEEEe--cCCeEEeecCCCceeeeec
Q 001123 486 --LE----GNLLGGWVA-HSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 486 --~~----G~~l~~l~g-H~~~V~sLa~--Dg~~LaSgS~DgtIRlWdl 525 (1149)
.. ++.+..|.| |...|.++.+ .+..++|||.||.+.+|..
T Consensus 297 ~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 297 VDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 22 345778887 6667777764 6778999999999999985
No 175
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.32 E-value=3.4e-11 Score=128.48 Aligned_cols=268 Identities=16% Similarity=0.144 Sum_probs=162.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEee-cCCCCEEEEEEeCCCcEEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~-GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl 269 (1149)
.+.|+|+-|..+++ |.+|..-|.|++|++.+.+ ....|+ .|+..|+.+...|++.|.|=+.|.++-+|++
T Consensus 14 ~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r--------~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 14 SSSVTSVLFQANER-LMSGLSVGIVKMWVLQTER--------DLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTI 84 (323)
T ss_pred cchheehhhccchh-hhcccccceEEEEEeecCc--------cchhhhhhccceeeceeecCCcchhhcCCCceEEEEEc
Confidence 78899999988776 8899999999999998854 245677 4688999999999888999999999999998
Q ss_pred CCcce--------------eeecCCCccee-eEEEeeeccccccccccccc----eeeee------cCCeEEEEEcC-CC
Q 001123 270 EAIEK--------------ALSLKPEERHT-AALIVERSYIDLRSHLSVNG----FSSIL------TSDIKNLLSDH-SR 323 (1149)
Q Consensus 270 ~t~~~--------------~~~l~~~~~~~-~a~~~~~~~~~l~~~~~~~g----~~~~~------~~dv~~las~~-~~ 323 (1149)
.-..- ...+.+..... ..+....-.-+. .|....+ ++... .+.+.+.-... .+
T Consensus 85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde-~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~ 163 (323)
T KOG0322|consen 85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE-THKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG 163 (323)
T ss_pred cCcceEEEeeeeccccccccceeccCCCcchhheecCCcccch-hhhhccCccceeEccCchhccccCceeeeecccccc
Confidence 65211 11111100000 000000000000 0111111 11100 01122222111 11
Q ss_pred -CEEEEec--CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEe
Q 001123 324 -AKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIM 400 (1149)
Q Consensus 324 -~~v~Sas--d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~ 400 (1149)
..+.-++ ++.+-+||+.++..+-.|.....++
T Consensus 164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~--------------------------------------------- 198 (323)
T KOG0322|consen 164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVE--------------------------------------------- 198 (323)
T ss_pred ceEEEEEeccCCeEEEEEccCCceeeccccccccc---------------------------------------------
Confidence 1222233 4668888888764332222111100
Q ss_pred ecCCcEEEEeecccccCCCCceEEEEEcCC-CcEEEEeCCCeEEEEeC---CCCe-eE-eeecCCccEE--EEEecCCEE
Q 001123 401 GAADAVRRVAAKGGFGDDNRRTEALTTSID-GMIWTGGANGLLLQWDP---NGNR-LQ-DFQYLPFAVQ--CLCTFGSQI 472 (1149)
Q Consensus 401 G~~d~v~rv~~~g~~~~~~~~V~ava~s~D-g~laSgs~DgtIrlWD~---tG~~-l~-tl~gH~~~V~--sls~dG~~L 472 (1149)
.....|.++|.+|.+.+- ..=++|+.+..+..|++ +|.+ ++ ++.--+-.|. .|-+|++.+
T Consensus 199 ------------~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIl 266 (323)
T KOG0322|consen 199 ------------SPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKIL 266 (323)
T ss_pred ------------cchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEE
Confidence 001233444444443321 12367888888999998 2543 21 1111112344 456799999
Q ss_pred EEeecCcEEEEEeC-CCceeeeeeccCCCeEEEEe--cCCeEEeecCCCceeeeec
Q 001123 473 WVGYMNGIVQVLDL-EGNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 473 aSGs~DGtIrlWD~-~G~~l~~l~gH~~~V~sLa~--Dg~~LaSgS~DgtIRlWdl 525 (1149)
|+++-|+.|||+.. +.+.++.|+-|.+.|++||+ |...+|.||.|..|-+|++
T Consensus 267 ATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 267 ATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999995 58999999999999999994 7689999999999999986
No 176
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.31 E-value=1.8e-11 Score=133.85 Aligned_cols=96 Identities=21% Similarity=0.288 Sum_probs=81.5
Q ss_pred eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCCC
Q 001123 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLD 226 (1149)
Q Consensus 148 g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg-~~LaSGS~DGtIRvWdl~~g~~~ 226 (1149)
|.-|-|||-|+..+++.+. +. .| .++|+.+.|.|+. ++|+|||+|.+||+|++.++.|
T Consensus 112 G~~GvIrVid~~~~~~~~~-----------------~~--gh-G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C- 170 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKN-----------------YR--GH-GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC- 170 (385)
T ss_pred cceeEEEEEecchhhhccc-----------------ee--cc-CccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE-
Confidence 5567799999988877654 11 23 6789999999985 8999999999999999999775
Q ss_pred CCCCccceEEe---ecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCC
Q 001123 227 SDDGFGEVLSW---QAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (1149)
Q Consensus 227 ~~~~~~~~~~l---~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t 271 (1149)
+..| .||++.|.+|-|+++|. |+|++.|.+|++|++..
T Consensus 171 -------v~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 171 -------VAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred -------EEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence 4444 68999999999999997 89999999999999974
No 177
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.30 E-value=1.3e-10 Score=125.13 Aligned_cols=244 Identities=18% Similarity=0.189 Sum_probs=163.0
Q ss_pred CCceEEEEEcCCC-CEEEEEeCC-------CeEEEEECCCCCCC-CCCCccceEEee-cCCCCEEEEEEeCCCc-EEEEE
Q 001123 191 VSSVMCMVGDEAS-GVVWSGHRD-------GRIMCWKMNARLLD-SDDGFGEVLSWQ-AHRGPVLSLCISSYGD-LWSGS 259 (1149)
Q Consensus 191 ~~~V~~lafs~dg-~~LaSGS~D-------GtIRvWdl~~g~~~-~~~~~~~~~~l~-GH~~~VtsVafSpdG~-L~SGS 259 (1149)
.+.|..++-+|-. ++|+|.-.| ..+-+|.+...... ...+++++..|- .|-+.|.||.|.|++. |++--
T Consensus 63 agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~ 142 (370)
T KOG1007|consen 63 AGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD 142 (370)
T ss_pred CcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec
Confidence 5677788888754 555555432 34679998653310 112334444443 5667999999999986 66554
Q ss_pred CCCcEEEEeCCCccee-eecCC-CcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEE
Q 001123 260 EGGGIKIWPWEAIEKA-LSLKP-EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALW 337 (1149)
Q Consensus 260 ~DgTIRVWdl~t~~~~-~~l~~-~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLW 337 (1149)
|..|-+|+++...+. ..+.. ....+ .+.-..|.+. | -+++..+++.++.+++.|
T Consensus 143 -dn~i~l~~l~ess~~vaev~ss~s~e~-------------~~~ftsg~Ws-p---------HHdgnqv~tt~d~tl~~~ 198 (370)
T KOG1007|consen 143 -DNNIVLWSLDESSKIVAEVLSSESAEM-------------RHSFTSGAWS-P---------HHDGNQVATTSDSTLQFW 198 (370)
T ss_pred -cCceEEEEcccCcchheeecccccccc-------------cceecccccC-C---------CCccceEEEeCCCcEEEE
Confidence 899999999765431 11100 00000 0111122221 1 145667777788999999
Q ss_pred EcCCccEEEEEe-cCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeeccccc
Q 001123 338 DARTRELLKVFN-IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFG 416 (1149)
Q Consensus 338 D~~TG~~L~~l~-~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~ 416 (1149)
|++|-.+..... .||
T Consensus 199 D~RT~~~~~sI~dAHg---------------------------------------------------------------- 214 (370)
T KOG1007|consen 199 DLRTMKKNNSIEDAHG---------------------------------------------------------------- 214 (370)
T ss_pred Eccchhhhcchhhhhc----------------------------------------------------------------
Confidence 998754433221 222
Q ss_pred CCCCceEEEEEcCCCc--EEEEeCCCeEEEEeC--CCCeeEeeecCCccEEEEEec---CCEEEEeecCcEEEEEeC---
Q 001123 417 DDNRRTEALTTSIDGM--IWTGGANGLLLQWDP--NGNRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDL--- 486 (1149)
Q Consensus 417 ~~~~~V~ava~s~Dg~--laSgs~DgtIrlWD~--tG~~l~tl~gH~~~V~sls~d---G~~LaSGs~DGtIrlWD~--- 486 (1149)
+.|..+-+.|+.+ |++|+.||-|||||. +...++++.+|..+|+++-++ .+.|.+|+.|..|-||..
T Consensus 215 ---q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 215 ---QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSV 291 (370)
T ss_pred ---ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccc
Confidence 3334444667655 789999999999999 468899999999999999875 589999999999999962
Q ss_pred CC---------------------------ceeeeeeccCCCeEEEEe---cCCeEEeecCCCceeeeec
Q 001123 487 EG---------------------------NLLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 487 ~G---------------------------~~l~~l~gH~~~V~sLa~---Dg~~LaSgS~DgtIRlWdl 525 (1149)
.. .++.++..|.+.|+++++ |+=.+||.|+||.+-|=.+
T Consensus 292 SSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 292 SSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 10 024578889999999984 7778899999998866443
No 178
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=2.7e-10 Score=138.97 Aligned_cols=279 Identities=15% Similarity=0.144 Sum_probs=171.3
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecC---CCCEEEEEEeCCCc---EEEEECCCcEEE
Q 001123 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH---RGPVLSLCISSYGD---LWSGSEGGGIKI 266 (1149)
Q Consensus 193 ~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH---~~~VtsVafSpdG~---L~SGS~DgTIRV 266 (1149)
+...+.|.|=...|+++...-+|++||-+.+.+ ...|.-+ ...|+.|.+--+-. |++||.||+|||
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~--------l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRI 1137 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRL--------LNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRI 1137 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCce--------eccccCCCCCCCccceeeeecccchhheeeeccCceEEE
Confidence 455677888788899888778999999987663 2222222 45799999865432 789999999999
Q ss_pred EeC-CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecC-CceEEEEcCCccE
Q 001123 267 WPW-EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTREL 344 (1149)
Q Consensus 267 Wdl-~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd-~tIrLWD~~TG~~ 344 (1149)
|+- .+...... -+.+. ..+.++... ..+....+......+.+.++++ ..|||||+..-.+
T Consensus 1138 wk~y~~~~~~~e------LVTaw------~~Ls~~~~~------~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~ 1199 (1387)
T KOG1517|consen 1138 WKDYADKWKKPE------LVTAW------SSLSDQLPG------ARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQV 1199 (1387)
T ss_pred ecccccccCCce------eEEee------ccccccCcc------CCCCCeeeehhhhCCeEEecCCeeEEEEEeccccee
Confidence 974 22100000 00000 001111100 0011122233344455555554 6799999987555
Q ss_pred EEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeee-eccccceEeecCCcEEEEeecc---------c
Q 001123 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGF-FQRSRNAIMGAADAVRRVAAKG---------G 414 (1149)
Q Consensus 345 L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f-~~~~~~~i~G~~d~v~rv~~~g---------~ 414 (1149)
++.+..... ..++++.. ...+..++.|-+||..|+.++. .
T Consensus 1200 ~~diP~~s~------------------------------t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~ 1249 (1387)
T KOG1517|consen 1200 VADIPYGSS------------------------------TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV 1249 (1387)
T ss_pred EeecccCCC------------------------------ccceeecccccCCceEEEeecCCceEEeecccCCcccccee
Confidence 443321110 01111111 1224667889999988887732 2
Q ss_pred ccCCCCc--eEEEEEcCCC--cEEEEeCCCeEEEEeCCCCee---EeeecCC---ccEEEEEe--cCCEEEEeecCcEEE
Q 001123 415 FGDDNRR--TEALTTSIDG--MIWTGGANGLLLQWDPNGNRL---QDFQYLP---FAVQCLCT--FGSQIWVGYMNGIVQ 482 (1149)
Q Consensus 415 ~~~~~~~--V~ava~s~Dg--~laSgs~DgtIrlWD~tG~~l---~tl~gH~---~~V~sls~--dG~~LaSGs~DGtIr 482 (1149)
...|... |..+.+-+.| .|+|||.||.|++||+.+... -+...|. +.++++.. +...||+|+. +.|+
T Consensus 1250 ~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ik 1328 (1387)
T KOG1517|consen 1250 YREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIK 1328 (1387)
T ss_pred ecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEE
Confidence 3455555 7777766654 599999999999999955222 2222332 24777765 5789999999 9999
Q ss_pred EEeCCCceeeeeeccC-------CCeEEEEecCC--eEEeecCCCceeeeeccCC
Q 001123 483 VLDLEGNLLGGWVAHS-------SPVIKMAVGAG--YIFTLANHGGIRGWNVTSP 528 (1149)
Q Consensus 483 lWD~~G~~l~~l~gH~-------~~V~sLa~Dg~--~LaSgS~DgtIRlWdl~sp 528 (1149)
|||+.|+.+..++-+. +.+.+|++.+. .+|.|+.|.+|-|+....+
T Consensus 1329 Iy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1329 IYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred EEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 9999998777666442 45677886554 5677889999999876543
No 179
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.30 E-value=6.3e-10 Score=124.90 Aligned_cols=159 Identities=22% Similarity=0.246 Sum_probs=114.3
Q ss_pred CCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCCCCC-CCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEE
Q 001123 191 VSSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSD-DGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIW 267 (1149)
Q Consensus 191 ~~~V~~lafs~dg~-~LaSGS~DGtIRvWdl~~g~~~~~-~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVW 267 (1149)
..+|..+.|.+.+. .||||+.|..||+|.++.+.-... -...-...|.+|..+|++|.|+|+|. |+||+.+|.|-+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 57899999998876 999999999999999876541000 01122345789999999999999998 7899999999999
Q ss_pred eCCCccee-----eecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCC
Q 001123 268 PWEAIEKA-----LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDART 341 (1149)
Q Consensus 268 dl~t~~~~-----~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~T 341 (1149)
-....... ..+.. +.++. ...+++|. .++..++.++++..+.+++ |.++++||+..
T Consensus 93 k~~~~~~~~~d~e~~~~k-e~w~v-------~k~lr~h~----------~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNK-EKWVV-------KKVLRGHR----------DDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred EecCcCCccccchhhhCc-cceEE-------EEEecccc----------cchhhhhccCCCceeeeeeccceEEEEEecc
Confidence 87531100 00000 01111 11223333 6777888888888776654 78999999999
Q ss_pred ccEEEEEecCCceeeEEeeccCCCcc
Q 001123 342 RELLKVFNIDGQIENRVDMSLLPDFA 367 (1149)
Q Consensus 342 G~~L~~l~~~g~~~~~v~~S~~~~~~ 367 (1149)
|.++..+..|...+..+++.+.....
T Consensus 155 G~l~~~~~dh~~yvqgvawDpl~qyv 180 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDPLNQYV 180 (434)
T ss_pred ceeEeeccccccccceeecchhhhhh
Confidence 99999999999888777777755443
No 180
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.29 E-value=4.3e-10 Score=126.21 Aligned_cols=138 Identities=17% Similarity=0.270 Sum_probs=95.9
Q ss_pred eEEEEEee---CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCCEEEE
Q 001123 134 FLRTIVCT---EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWS 208 (1149)
Q Consensus 134 ~l~~l~~~---~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~~LaS 208 (1149)
.+.++.++ .+.+.+ |.|..||+|-++.+...+. . ....+...+.+ .++|+++.|+|+|.+|||
T Consensus 15 pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~-------~-----~~V~y~s~Ls~H~~aVN~vRf~p~gelLAS 82 (434)
T KOG1009|consen 15 PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG-------D-----MKVEYLSSLSRHTRAVNVVRFSPDGELLAS 82 (434)
T ss_pred ceEEEEeccCcccceecccCccceeeeeeeecCCCCC-------c-----eeEEEeecccCCcceeEEEEEcCCcCeeee
Confidence 34455555 224443 6799999999886554331 0 11112222222 889999999999999999
Q ss_pred EeCCCeEEEEECCCCC------CCC--CCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecC
Q 001123 209 GHRDGRIMCWKMNARL------LDS--DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLK 279 (1149)
Q Consensus 209 GS~DGtIRvWdl~~g~------~~~--~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~ 279 (1149)
|+.+|.|.+|...... +.. .........+.||..-|..++++||+. |++||.|.++++||+..+.....+.
T Consensus 83 g~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~ 162 (434)
T KOG1009|consen 83 GGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD 162 (434)
T ss_pred cCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc
Confidence 9999999999876211 000 111223456789999999999999998 7899999999999999887655554
Q ss_pred CCcc
Q 001123 280 PEER 283 (1149)
Q Consensus 280 ~~~~ 283 (1149)
.+..
T Consensus 163 dh~~ 166 (434)
T KOG1009|consen 163 DHEH 166 (434)
T ss_pred cccc
Confidence 4443
No 181
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=6e-11 Score=146.78 Aligned_cols=231 Identities=19% Similarity=0.265 Sum_probs=154.8
Q ss_pred eEEEe--CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCC-EEEEEeCCCeEEEEEC
Q 001123 144 QLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG-VVWSGHRDGRIMCWKM 220 (1149)
Q Consensus 144 ~l~ag--~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~-~LaSGS~DGtIRvWdl 220 (1149)
.|+|| .||.|-+||........ ....-.....| +++|..|.|++... +||||+.||.|.+||+
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~-------------~~~~la~~~~h-~G~V~gLDfN~~q~nlLASGa~~geI~iWDl 146 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANA-------------SEEVLATKSKH-TGPVLGLDFNPFQGNLLASGADDGEILIWDL 146 (1049)
T ss_pred ceeeccccCCceEEecchhhccCc-------------chHHHhhhccc-CCceeeeeccccCCceeeccCCCCcEEEecc
Confidence 46664 49999999976431110 00001112355 89999999999865 9999999999999999
Q ss_pred CCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc--EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeecccccc
Q 001123 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLR 298 (1149)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~--L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~ 298 (1149)
..-. .++... -+.-.+-|.+|++...-+ |+||+.+|++-|||++..+..+.++.....+
T Consensus 147 nn~~----tP~~~~--~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~------------- 207 (1049)
T KOG0307|consen 147 NKPE----TPFTPG--SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM------------- 207 (1049)
T ss_pred CCcC----CCCCCC--CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcc-------------
Confidence 7622 222211 122356799999886543 7899999999999998766555554332211
Q ss_pred ccccccceeeeecCCeEEEEEcCCCC-EEEEec-C---CceEEEEcCCcc-EEEEEecCCceeeEEeeccCCCccccccc
Q 001123 299 SHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-F---LSFALWDARTRE-LLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (1149)
Q Consensus 299 ~~~~~~g~~~~~~~dv~~las~~~~~-~v~Sas-d---~tIrLWD~~TG~-~L~~l~~~g~~~~~v~~S~~~~~~~~~~~ 372 (1149)
.+..+.+.++.. .|+.++ | -.|.+||++.-. .++
T Consensus 208 --------------~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k-------------------------- 247 (1049)
T KOG0307|consen 208 --------------HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLK-------------------------- 247 (1049)
T ss_pred --------------ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchh--------------------------
Confidence 122334444332 333333 2 259999986310 111
Q ss_pred eeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCC--cEEEEeCCCeEEEEeC-CC
Q 001123 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG--MIWTGGANGLLLQWDP-NG 449 (1149)
Q Consensus 373 ~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg--~laSgs~DgtIrlWD~-tG 449 (1149)
.+.+|...|.++.+.+.+ .++|++.|+.|.+|+. +|
T Consensus 248 -----------------------------------------~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg 286 (1049)
T KOG0307|consen 248 -----------------------------------------ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG 286 (1049)
T ss_pred -----------------------------------------hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence 133444455555555433 4789999999999999 89
Q ss_pred CeeEeeecCCccEEEEEec---CCEEEEeecCcEEEEEeCCC
Q 001123 450 NRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLEG 488 (1149)
Q Consensus 450 ~~l~tl~gH~~~V~sls~d---G~~LaSGs~DGtIrlWD~~G 488 (1149)
+.+..+....+++..+.+. -..++++|.||.|.|+.+.|
T Consensus 287 Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 287 EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 9999998888899988764 56999999999999999763
No 182
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=4.4e-10 Score=134.51 Aligned_cols=208 Identities=13% Similarity=0.049 Sum_probs=128.5
Q ss_pred CCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEE-EECCCcEE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRD---GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWS-GSEGGGIK 265 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~D---GtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~S-GS~DgTIR 265 (1149)
...+.+.+|||||+.|+..+.+ ..|.+||+.++.. ..+..+.||. .+++|+|||+ |+. .+.||.++
T Consensus 203 ~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~------~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~ 273 (429)
T PRK01742 203 SQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR------KVVASFRGHN---GAPAFSPDGSRLAFASSKDGVLN 273 (429)
T ss_pred CCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce------EEEecCCCcc---CceeECCCCCEEEEEEecCCcEE
Confidence 5578899999999999988765 3699999987651 2233345554 4689999997 654 45788887
Q ss_pred EEeC--CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec--CCceEEEEcCC
Q 001123 266 IWPW--EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDART 341 (1149)
Q Consensus 266 VWdl--~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas--d~tIrLWD~~T 341 (1149)
||.+ .++.. ..++.+ ...+....+++++..++.++ ++..+||++..
T Consensus 274 Iy~~d~~~~~~-~~lt~~-----------------------------~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 274 IYVMGANGGTP-SQLTSG-----------------------------AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred EEEEECCCCCe-EeeccC-----------------------------CCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 7754 33321 111110 01223345667777665443 35677777532
Q ss_pred ccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCc
Q 001123 342 RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRR 421 (1149)
Q Consensus 342 G~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~ 421 (1149)
... .. .++ .+..
T Consensus 324 ~~~--------~~----------------------------------------------------~~l-------~~~~- 335 (429)
T PRK01742 324 SGG--------GA----------------------------------------------------SLV-------GGRG- 335 (429)
T ss_pred CCC--------Ce----------------------------------------------------EEe-------cCCC-
Confidence 100 00 000 0000
Q ss_pred eEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEecCCEEEEeecCcEEEEEe---CCCceeeeeec
Q 001123 422 TEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLD---LEGNLLGGWVA 496 (1149)
Q Consensus 422 V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~dG~~LaSGs~DGtIrlWD---~~G~~l~~l~g 496 (1149)
....++|||. |+.++.++ +.+||+ +|++......+...--++++||++|+.++.+|.+++|+ .+|+.++.+.+
T Consensus 336 -~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~ 413 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG 413 (429)
T ss_pred -CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC
Confidence 1234788876 66666665 555999 67654332233222235677999999999999888777 46999999999
Q ss_pred cCCCeEEEEec
Q 001123 497 HSSPVIKMAVG 507 (1149)
Q Consensus 497 H~~~V~sLa~D 507 (1149)
|.+.+...++.
T Consensus 414 ~~g~~~~p~ws 424 (429)
T PRK01742 414 SDGQVKFPAWS 424 (429)
T ss_pred CCCCCCCcccC
Confidence 98877766643
No 183
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.22 E-value=8.1e-10 Score=125.48 Aligned_cols=278 Identities=15% Similarity=0.134 Sum_probs=171.3
Q ss_pred eEEEEEee---CCeEEE-eC-CCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCC-CEEE
Q 001123 134 FLRTIVCT---EEQLWA-GG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS-GVVW 207 (1149)
Q Consensus 134 ~l~~l~~~---~~~l~a-g~-D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg-~~La 207 (1149)
.+.+++.| +..+.| |. -|.|-+||+.+.... .+. -+....| .++|.+|.|+|.+ ..|.
T Consensus 188 Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d--------------~d~-v~~f~~h-s~~Vs~l~F~P~n~s~i~ 251 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD--------------KDG-VYLFTPH-SGPVSGLKFSPANTSQIY 251 (498)
T ss_pred ceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc--------------cCc-eEEeccC-CccccceEecCCChhhee
Confidence 44455555 435555 44 455999999521111 110 1222234 7899999999976 7899
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceee
Q 001123 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (1149)
Q Consensus 208 SGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~ 286 (1149)
|.|+||+||+=|++++. +.+++++.--.....++.|+.+.. ++.|..=|..-+||+.+......
T Consensus 252 ssSyDGtiR~~D~~~~i------~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~--------- 316 (498)
T KOG4328|consen 252 SSSYDGTIRLQDFEGNI------SEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYE--------- 316 (498)
T ss_pred eeccCceeeeeeecchh------hHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccch---------
Confidence 99999999999999855 355665554455677788887665 67777667899999987542110
Q ss_pred EEEeeeccccccccccccceeeeecCCeEEEEEcCCCC-EEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCC
Q 001123 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (1149)
Q Consensus 287 a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~-~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~ 364 (1149)
-++-| .-.|..+++.+-.. .+++++ |+|.+|||++.- .+....
T Consensus 317 ---------~~~lh----------~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l------~~K~sp---------- 361 (498)
T KOG4328|consen 317 ---------NLRLH----------KKKITSVALNPVCPWFLATASLDQTAKIWDLRQL------RGKASP---------- 361 (498)
T ss_pred ---------hhhhh----------hcccceeecCCCCchheeecccCcceeeeehhhh------cCCCCc----------
Confidence 01111 12445555555433 344554 789999998741 111100
Q ss_pred CccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecc----c-----ccCCCC----ceE--EEEEcC
Q 001123 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG----G-----FGDDNR----RTE--ALTTSI 429 (1149)
Q Consensus 365 ~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g----~-----~~~~~~----~V~--ava~s~ 429 (1149)
+++...+.+.+.+..|+|.+..+++.+.|.-.|+++.. . ...|.. .+. ..++.|
T Consensus 362 -----------~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P 430 (498)
T KOG4328|consen 362 -----------FLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDP 430 (498)
T ss_pred -----------ceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCC
Confidence 13444555677778888888778888888877777631 1 112221 122 234677
Q ss_pred CCc-EEEEeCCCeEEEEeCCC-CeeEeeecCCc-cEEEE---EecCC-EEEEeecCcEEEEEeCCC
Q 001123 430 DGM-IWTGGANGLLLQWDPNG-NRLQDFQYLPF-AVQCL---CTFGS-QIWVGYMNGIVQVLDLEG 488 (1149)
Q Consensus 430 Dg~-laSgs~DgtIrlWD~tG-~~l~tl~gH~~-~V~sl---s~dG~-~LaSGs~DGtIrlWD~~G 488 (1149)
|-. |++|-.-..|-++|.+| +.+..+..... .|.++ -+-+. ++|-|.+.|.|.||--++
T Consensus 431 ~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 431 DYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred CccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecCC
Confidence 654 67888888899999965 44666544322 45555 33355 555556789999997654
No 184
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=1.4e-10 Score=130.84 Aligned_cols=71 Identities=21% Similarity=0.294 Sum_probs=61.5
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcc
Q 001123 195 MCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE 273 (1149)
Q Consensus 195 ~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~ 273 (1149)
.+++|+.+|..|++|+.||++|+|+...-. .++....|.+.|.++.|||||+ |+|-+.| ..+||+++++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~--------t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML--------TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA 218 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch--------hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc
Confidence 799999999999999999999999954422 2555678999999999999998 7898888 89999998864
Q ss_pred e
Q 001123 274 K 274 (1149)
Q Consensus 274 ~ 274 (1149)
+
T Consensus 219 ~ 219 (398)
T KOG0771|consen 219 A 219 (398)
T ss_pred h
Confidence 3
No 185
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.21 E-value=7.1e-10 Score=129.44 Aligned_cols=265 Identities=16% Similarity=0.149 Sum_probs=174.8
Q ss_pred eeEEEEEee--CCeEEEeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCCEEEEE
Q 001123 133 CFLRTIVCT--EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSG 209 (1149)
Q Consensus 133 ~~l~~l~~~--~~~l~ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~~LaSG 209 (1149)
.|+..++.. +++|....+..+-++|..+|....+ +.| ...|+|+|++.||+++|||
T Consensus 13 hci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqt---------------------LKgHKDtVycVAys~dGkrFASG 71 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQP---------------------LKGHKDTVYCVAYAKDGKRFASG 71 (1081)
T ss_pred cchheeEECCCCceEEEecCCEEEEEeCCCcccccc---------------------cccccceEEEEEEccCCceeccC
Confidence 367777765 8899888889999999998877654 334 8899999999999999999
Q ss_pred eCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEE
Q 001123 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (1149)
Q Consensus 210 S~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~ 288 (1149)
+.|..|.+|+..-.- ++. -.|.+.|.||.|.|-.+ |+|+|-. -.-+|..+.....
T Consensus 72 ~aDK~VI~W~~klEG---------~Lk-YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~------------- 127 (1081)
T KOG1538|consen 72 SADKSVIIWTSKLEG---------ILK-YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS------------- 127 (1081)
T ss_pred CCceeEEEecccccc---------eee-eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHH-------------
Confidence 999999999854311 222 36999999999999876 8898853 2458887532100
Q ss_pred EeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEe-cCCceEEEEcCCccEEEEEe---cCCceeeEEeeccCC
Q 001123 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVFN---IDGQIENRVDMSLLP 364 (1149)
Q Consensus 289 ~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sa-sd~tIrLWD~~TG~~L~~l~---~~g~~~~~v~~S~~~ 364 (1149)
.+.. +..+.+.+...+|..++-+ .++||.+=+ .+|+.-.... ++...+.++.++++.
T Consensus 128 ----------K~ks--------s~R~~~CsWtnDGqylalG~~nGTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~s 188 (1081)
T KOG1538|consen 128 ----------KHKS--------SSRIICCSWTNDGQYLALGMFNGTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSS 188 (1081)
T ss_pred ----------hhhh--------heeEEEeeecCCCcEEEEeccCceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCC
Confidence 0110 1223344455555555443 467777775 4565433333 233445566666543
Q ss_pred CccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCC----ceEEEEEcCCCc-EEEEeCC
Q 001123 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR----RTEALTTSIDGM-IWTGGAN 439 (1149)
Q Consensus 365 ~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~----~V~ava~s~Dg~-laSgs~D 439 (1149)
.....+.+.+-.|.. ++.|.+- .|.+.+... ...|+..-++|. ++.|+.|
T Consensus 189 g~G~~di~aV~DW~q--------TLSFy~L-----------------sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsd 243 (1081)
T KOG1538|consen 189 GEGRNDILAVADWGQ--------TLSFYQL-----------------SGKQIGKDRALNFDPCCISYFTNGEYILLGGSD 243 (1081)
T ss_pred CCCccceEEEEeccc--------eeEEEEe-----------------cceeecccccCCCCchhheeccCCcEEEEccCC
Confidence 322211111111110 1122111 122222211 233566556664 8899999
Q ss_pred CeEEEEeCCCCeeEeeecCCccEEEEE--ecCCEEEEeecCcEEEEEeC
Q 001123 440 GLLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDL 486 (1149)
Q Consensus 440 gtIrlWD~tG~~l~tl~gH~~~V~sls--~dG~~LaSGs~DGtIrlWD~ 486 (1149)
+.++++...|-.+.++.....+|+++. ++|++++.|+-||||--+++
T Consensus 244 k~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 244 KQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred CceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 999999999999999988888999885 58999999999999999995
No 186
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.19 E-value=2.4e-09 Score=129.53 Aligned_cols=279 Identities=14% Similarity=0.112 Sum_probs=161.7
Q ss_pred CCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCC
Q 001123 150 ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSD 228 (1149)
Q Consensus 150 D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~d-g~~LaSGS~DGtIRvWdl~~g~~~~~ 228 (1149)
++.+-|||+++...+.. . ++-..+|.|+.|+|. ..+||.|.++|.|-+||+..+.. .
T Consensus 221 ~~~~~vW~~~~p~~Pe~-------------------~-~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~--~ 278 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPEL-------------------V-LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSD--T 278 (555)
T ss_pred CceEEEEecCCCCCceE-------------------E-EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCC--C
Confidence 55799999986532221 1 122678999999985 68999999999999999987651 0
Q ss_pred CCccceEEeecCCCCEEEEEEeCCC---cEEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccc
Q 001123 229 DGFGEVLSWQAHRGPVLSLCISSYG---DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNG 305 (1149)
Q Consensus 229 ~~~~~~~~l~GH~~~VtsVafSpdG---~L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g 305 (1149)
.+......-..|+.+|+.+++..+- .++|+|.||.|..|+++-..........+... ............
T Consensus 279 ~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~--------~~~~~~~~~~~~ 350 (555)
T KOG1587|consen 279 PPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK--------HKGQQSSKAVGA 350 (555)
T ss_pred CCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccc--------ccccccccccce
Confidence 0111122234689999999997642 39999999999999875422100000000000 000000010111
Q ss_pred eee-eecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCc
Q 001123 306 FSS-ILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDK 384 (1149)
Q Consensus 306 ~~~-~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~ 384 (1149)
++. .+..+......+.+.+.|..|.. ++.+.+.. ..+
T Consensus 351 t~~~F~~~~p~~FiVGTe~G~v~~~~r-----~g~~~~~~-~~~------------------------------------ 388 (555)
T KOG1587|consen 351 TSLKFEPTDPNHFIVGTEEGKVYKGCR-----KGYTPAPE-VSY------------------------------------ 388 (555)
T ss_pred eeEeeccCCCceEEEEcCCcEEEEEec-----cCCccccc-ccc------------------------------------
Confidence 100 01111111111111122211110 00000000 000
Q ss_pred cceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-E-EEEeCCCeEEEEeCC--CCeeEeeecCCc
Q 001123 385 AQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-I-WTGGANGLLLQWDPN--GNRLQDFQYLPF 460 (1149)
Q Consensus 385 ~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-l-aSgs~DgtIrlWD~t--G~~l~tl~gH~~ 460 (1149)
.+ ...+..|...|.++.++|=+. + +|++ |-+||||... -..+-.+..+..
T Consensus 389 ---------------~~----------~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~ 442 (555)
T KOG1587|consen 389 ---------------KG----------HSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPD 442 (555)
T ss_pred ---------------cc----------cccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccc
Confidence 00 012445667778888777543 3 4444 9999999984 466777777888
Q ss_pred cEEEEEec---CCEEEEeecCcEEEEEeCC---CceeeeeeccCCCeEEEE--ecCCeEEeecCCCceeeeecc
Q 001123 461 AVQCLCTF---GSQIWVGYMNGIVQVLDLE---GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 461 ~V~sls~d---G~~LaSGs~DGtIrlWD~~---G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
.|+++++. ...+|++..||+|.+||+- -.++.+..-+......+. ..|+.|+.|..-|++.+|++.
T Consensus 443 ~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 443 YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred eeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 89999875 4689999999999999964 234455444433334444 469999999999999999984
No 187
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.19 E-value=1.1e-09 Score=119.71 Aligned_cols=223 Identities=16% Similarity=0.183 Sum_probs=141.3
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCC---CEEEEEEeCCCcEEEEECCCcEEEEeCC-Cccee
Q 001123 200 DEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG---PVLSLCISSYGDLWSGSEGGGIKIWPWE-AIEKA 275 (1149)
Q Consensus 200 s~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~---~VtsVafSpdG~L~SGS~DgTIRVWdl~-t~~~~ 275 (1149)
.|+-.++|+.++|.-|++||.-+|.. +.....-.|.+ +-.|++|+|||.-+=++...+||++|+. +|...
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~l------raSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c 193 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKL------RASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDC 193 (406)
T ss_pred CCccceeeeccccCceeeeecccccc------ccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCC
Confidence 46778999999999999999998873 22222223533 3458999999984444567999999984 33211
Q ss_pred eecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCC-EEEEecC-CceEEEEcCCccEEEEEecCCc
Q 001123 276 LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAGF-LSFALWDARTRELLKVFNIDGQ 353 (1149)
Q Consensus 276 ~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~-~v~Sasd-~tIrLWD~~TG~~L~~l~~~g~ 353 (1149)
-. ..++ .++... ..+=+.++++++-.. .++.++. .++-|+.-..++++.++
T Consensus 194 ~v-------y~t~--------~~~k~g-------q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll----- 246 (406)
T KOG2919|consen 194 PV-------YTTV--------TKGKFG-------QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL----- 246 (406)
T ss_pred cc-------hhhh--------hccccc-------ccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee-----
Confidence 00 0000 000000 012244555655443 2222221 22222222222222222
Q ss_pred eeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-
Q 001123 354 IENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM- 432 (1149)
Q Consensus 354 ~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~- 432 (1149)
.+|...|+.+.+-+||.
T Consensus 247 --------------------------------------------------------------ggh~gGvThL~~~edGn~ 264 (406)
T KOG2919|consen 247 --------------------------------------------------------------GGHGGGVTHLQWCEDGNK 264 (406)
T ss_pred --------------------------------------------------------------cccCCCeeeEEeccCcCe
Confidence 24445566667788875
Q ss_pred EEEEeC-CCeEEEEeC--CCCeeEeeecCCc----cEE-EEEecCCEEEEeecCcEEEEEeCC--CceeeeeeccCCCeE
Q 001123 433 IWTGGA-NGLLLQWDP--NGNRLQDFQYLPF----AVQ-CLCTFGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVI 502 (1149)
Q Consensus 433 laSgs~-DgtIrlWD~--tG~~l~tl~gH~~----~V~-sls~dG~~LaSGs~DGtIrlWD~~--G~~l~~l~gH~~~V~ 502 (1149)
+.+|+. |-.|-.||+ .+..+-.|..|.. .|. .+.+.|++||+|+.||.|++||+. |.....+..|.+.|+
T Consensus 265 lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vN 344 (406)
T KOG2919|consen 265 LFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVN 344 (406)
T ss_pred ecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccccccc
Confidence 788776 678999999 4678888888866 233 445679999999999999999986 788889999999999
Q ss_pred EEEecC--CeEEeecCC
Q 001123 503 KMAVGA--GYIFTLANH 517 (1149)
Q Consensus 503 sLa~Dg--~~LaSgS~D 517 (1149)
.++..+ .+++|+|..
T Consensus 345 gvslnP~mpilatssGq 361 (406)
T KOG2919|consen 345 GVSLNPIMPILATSSGQ 361 (406)
T ss_pred ceecCcccceeeeccCc
Confidence 998554 467777655
No 188
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=1.4e-09 Score=120.85 Aligned_cols=285 Identities=12% Similarity=0.082 Sum_probs=165.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeec--CCCCEEEEEEeCCCc-EEEEECCCcEEEE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA--HRGPVLSLCISSYGD-LWSGSEGGGIKIW 267 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~G--H~~~VtsVafSpdG~-L~SGS~DgTIRVW 267 (1149)
++-|+++.||.++++||||+.|..+++|.++.-. ..+..+++. +.| |+..|.|++|...++ |+||..|++|-+-
T Consensus 56 ~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~--~~k~~KPI~-~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H 132 (609)
T KOG4227|consen 56 TGCINALQFSHNDRFLASGGDDMHGRVWNVDELM--VRKTPKPIG-VMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH 132 (609)
T ss_pred ccccceeeeccCCeEEeecCCcceeeeechHHHH--hhcCCCCce-eccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence 8889999999999999999999999999987522 212223332 344 578999999998776 8999999999999
Q ss_pred eCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCcc-EE
Q 001123 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE-LL 345 (1149)
Q Consensus 268 dl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~-~L 345 (1149)
|+++.+.+..+..... . ++|..+...+.+..+++.+ ++-+.+||.+... .+
T Consensus 133 DiEt~qsi~V~~~~~~----------------~-----------~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~ 185 (609)
T KOG4227|consen 133 DIETKQSIYVANENNN----------------R-----------GDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPI 185 (609)
T ss_pred ecccceeeeeecccCc----------------c-----------cceeecccCCCCceEEEEecCceEEEEeccCCCCCC
Confidence 9988664433211110 0 2233333334444444444 4568899987643 11
Q ss_pred EEE--ecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeec-CCcEEEEee----------c
Q 001123 346 KVF--NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA-ADAVRRVAA----------K 412 (1149)
Q Consensus 346 ~~l--~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~-~d~v~rv~~----------~ 412 (1149)
..+ ...+....++.|.|....+ +++.+ .+|+. +|+ .
T Consensus 186 ~~~~~AN~~~~F~t~~F~P~~P~L------------------------------i~~~~~~~G~~-~~D~R~~~~~~~~~ 234 (609)
T KOG4227|consen 186 SLVLPANSGKNFYTAEFHPETPAL------------------------------ILVNSETGGPN-VFDRRMQARPVYQR 234 (609)
T ss_pred ceeeecCCCccceeeeecCCCcee------------------------------EEeccccCCCC-ceeeccccchHHhh
Confidence 111 1111111122222211111 11111 11111 111 1
Q ss_pred ccccCCCC---ceEEEEEcCCCc-EEEEeCCCeEEEEeCCCCeeEeeec-CC-------ccEEEEEec-CCEEEEeecCc
Q 001123 413 GGFGDDNR---RTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQY-LP-------FAVQCLCTF-GSQIWVGYMNG 479 (1149)
Q Consensus 413 g~~~~~~~---~V~ava~s~Dg~-laSgs~DgtIrlWD~tG~~l~tl~g-H~-------~~V~sls~d-G~~LaSGs~DG 479 (1149)
+.+.+-.+ .--.+.|++.|. +.+--.-..=.++|+-.+.+-.|+. |+ ..+.++++- ...+++|+.+=
T Consensus 235 ~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~ 314 (609)
T KOG4227|consen 235 SMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHW 314 (609)
T ss_pred hccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCccc
Confidence 11211111 112355777775 4443333445567774433333322 22 134455663 45699999999
Q ss_pred EEEEEeCC------C-----c-------------eeeeeeccCCCeEEEEe--cCCeEEeecCCCceeeeecc-CCCCCc
Q 001123 480 IVQVLDLE------G-----N-------------LLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT-SPGPLD 532 (1149)
Q Consensus 480 tIrlWD~~------G-----~-------------~l~~l~gH~~~V~sLa~--Dg~~LaSgS~DgtIRlWdl~-sp~pld 532 (1149)
.|.+|-+- | . .+..|+||.+.++.|.+ ...+|+|.+-.+.+|+|.-. .|+.+|
T Consensus 315 ~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r~P~~~D 394 (609)
T KOG4227|consen 315 GIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHRLPWSYD 394 (609)
T ss_pred ceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccccCCcccC
Confidence 99999841 3 1 25689999999999984 66788899999999999753 355555
Q ss_pred hhhh
Q 001123 533 SILC 536 (1149)
Q Consensus 533 ~~i~ 536 (1149)
..++
T Consensus 395 ~~~E 398 (609)
T KOG4227|consen 395 LPFE 398 (609)
T ss_pred Cccc
Confidence 4433
No 189
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.18 E-value=2.8e-10 Score=129.62 Aligned_cols=248 Identities=15% Similarity=0.159 Sum_probs=157.9
Q ss_pred eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCC
Q 001123 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (1149)
Q Consensus 148 g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~ 227 (1149)
++|+-+++|.-. |..+ ..|..+... ...-.||+......+++||+..++|++||+....|
T Consensus 54 ~gdk~~~~~~K~-g~~~----------------~Vp~~~k~~-gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~-- 113 (673)
T KOG4378|consen 54 AGDKVMRIKEKD-GKTP----------------EVPRVRKLT-GDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLI-- 113 (673)
T ss_pred CCceeEEEeccc-CCCC----------------ccceeeccc-cchHHHHhhhhcceeeeccCcCceeeehhhHHHHH--
Confidence 568889999843 3321 123333232 34556777777789999999999999999986442
Q ss_pred CCCccceEEeecCCCCEEEEEEeCCC-cEEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccce
Q 001123 228 DDGFGEVLSWQAHRGPVLSLCISSYG-DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGF 306 (1149)
Q Consensus 228 ~~~~~~~~~l~GH~~~VtsVafSpdG-~L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~ 306 (1149)
...+++|+..|++|.+.-.. .|+|+|..|-|-|-.+.++.+...++....
T Consensus 114 ------hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sg----------------------- 164 (673)
T KOG4378|consen 114 ------HRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSG----------------------- 164 (673)
T ss_pred ------hhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCC-----------------------
Confidence 55689999999999997644 499999999999999988766544432211
Q ss_pred eeeecCCeEEEEEcCCC-CEEEEecC-CceEEEEcCCccEEEEE-ecCCceeeEEeeccCCCccccccceeeEEecCCCC
Q 001123 307 SSILTSDIKNLLSDHSR-AKVWSAGF-LSFALWDARTRELLKVF-NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKD 383 (1149)
Q Consensus 307 ~~~~~~dv~~las~~~~-~~v~Sasd-~tIrLWD~~TG~~L~~l-~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~ 383 (1149)
..++.+-++... ..+.+++| +++.|||+..-.....+ +.|...-..+.|+|....++- +-+-+
T Consensus 165 -----qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~v---------sVG~D 230 (673)
T KOG4378|consen 165 -----QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLV---------SVGYD 230 (673)
T ss_pred -----CeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEE---------Eeccc
Confidence 112334444433 34556665 67999998765544332 345444445566665554321 11111
Q ss_pred ccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeCCC--CeeEeeecCCc
Q 001123 384 KAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPNG--NRLQDFQYLPF 460 (1149)
Q Consensus 384 ~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~tG--~~l~tl~gH~~ 460 (1149)
+.+ ..++.+ +...+.++. ...+..+|+|+++|. |+.|...|.|..||+.+ ..+.++..|..
T Consensus 231 kki---~~yD~~------s~~s~~~l~-------y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~ 294 (673)
T KOG4378|consen 231 KKI---NIYDIR------SQASTDRLT-------YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA 294 (673)
T ss_pred ceE---EEeecc------cccccceee-------ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc
Confidence 111 111110 000111111 123456899999998 77899999999999954 78899999999
Q ss_pred cEEEEEecC-CEEEE
Q 001123 461 AVQCLCTFG-SQIWV 474 (1149)
Q Consensus 461 ~V~sls~dG-~~LaS 474 (1149)
.|++|++.- +.+++
T Consensus 295 sVt~vafq~s~tvlt 309 (673)
T KOG4378|consen 295 SVTRVAFQPSPTVLT 309 (673)
T ss_pred ceeEEEeeecceeee
Confidence 999999853 34443
No 190
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.18 E-value=3.4e-11 Score=143.55 Aligned_cols=240 Identities=17% Similarity=0.200 Sum_probs=162.8
Q ss_pred eEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecC
Q 001123 234 VLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTS 312 (1149)
Q Consensus 234 ~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~ 312 (1149)
+..|.||.++|+|++|...|. +++||.|..||||.+++..+.... +||. +
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~-------------------rGhs----------~ 233 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASC-------------------RGHS----------G 233 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccC-------------------CCCc----------c
Confidence 445789999999999999997 899999999999999887654332 3333 6
Q ss_pred CeEEEEEcCCCCEEEEecC-CceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeee
Q 001123 313 DIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGF 391 (1149)
Q Consensus 313 dv~~las~~~~~~v~Sasd-~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f 391 (1149)
++..++.+..+.++++++. ..|++|-+.+|.++.+|.+|...++.++|+|.......+ ..++|... -..+.+
T Consensus 234 ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~sss~dg--t~~~wd~r-----~~~~~y 306 (1113)
T KOG0644|consen 234 DITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRASSSDDG--TCRIWDAR-----LEPRIY 306 (1113)
T ss_pred ccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccccCCCCC--ceEecccc-----cccccc
Confidence 6777777777777777774 569999999999999999888777777877754221111 11122110 000000
Q ss_pred eccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeCC---CCeeEeeecCCccEEEEEe
Q 001123 392 FQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN---GNRLQDFQYLPFAVQCLCT 467 (1149)
Q Consensus 392 ~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~t---G~~l~tl~gH~~~V~sls~ 467 (1149)
.|+ ...+.++ ..+..+.+-..+. .+||+.|++-+.|... ++-..... |+..+.
T Consensus 307 ~pr-----------------p~~~~~~-~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif-----~t~ssd 363 (1113)
T KOG0644|consen 307 VPR-----------------PLKFTEK-DLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIF-----VTRSSD 363 (1113)
T ss_pred CCC-----------------CCCcccc-cceeeeeccccccccccccCCcccccchhhHhhhhccceEE-----Eecccc
Confidence 000 0011111 2233444544444 7899999999999872 22111110 111111
Q ss_pred cCCEEEEeecCcEEEEEeC-CCceeeeeeccCCCeEEEE---ecCCeEEeecCCCceeeeeccCCCCCc
Q 001123 468 FGSQIWVGYMNGIVQVLDL-EGNLLGGWVAHSSPVIKMA---VGAGYIFTLANHGGIRGWNVTSPGPLD 532 (1149)
Q Consensus 468 dG~~LaSGs~DGtIrlWD~-~G~~l~~l~gH~~~V~sLa---~Dg~~LaSgS~DgtIRlWdl~sp~pld 532 (1149)
...+.+++=.+-.+.+|++ +|++++.+.||.+.++.|. ++.+...|++.||.+-|||+....|+.
T Consensus 364 ~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik 432 (1113)
T KOG0644|consen 364 LSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIK 432 (1113)
T ss_pred ccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcce
Confidence 2357777778899999996 5999999999999999887 477888899999999999998777754
No 191
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.16 E-value=2.1e-09 Score=133.38 Aligned_cols=282 Identities=13% Similarity=0.163 Sum_probs=164.0
Q ss_pred CCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEe
Q 001123 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (1149)
Q Consensus 191 ~~~V~~lafs~d-g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWd 268 (1149)
...|..++.++. +.+++|||.||+||+|+...-.. .........++.--.+.|.++.+.+.|+ ++-|+.||.|++-+
T Consensus 1048 s~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~-~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~ 1126 (1431)
T KOG1240|consen 1048 SSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEG-EGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLR 1126 (1431)
T ss_pred cccccceeecCCCCceEEEecCCceEEEeeehhhhc-CcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEE
Confidence 566777877765 59999999999999999753221 0011222344443467899999999886 88889999999999
Q ss_pred CCCc--ceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEc-CCCC--EEEEecCCceEEEEcCCcc
Q 001123 269 WEAI--EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD-HSRA--KVWSAGFLSFALWDARTRE 343 (1149)
Q Consensus 269 l~t~--~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~-~~~~--~v~Sasd~tIrLWD~~TG~ 343 (1149)
++.. .+... .+. |. .+++..+ .-+.+.++. .... .++.-....|..||+++..
T Consensus 1127 id~~~~~~~~~--------~~~---ri-~n~~~~g----------~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1127 IDHYNVSKRVA--------TQV---RI-PNLKKDG----------VVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred cccccccccee--------eee---ec-ccccCCC----------ceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence 8652 11100 000 00 0111000 001111111 1112 2233334668899998765
Q ss_pred EEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecc--cc-----c
Q 001123 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG--GF-----G 416 (1149)
Q Consensus 344 ~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g--~~-----~ 416 (1149)
-+.+++... +...++++...+-+.+++.|...|....|+.. .. -
T Consensus 1185 ~~w~lk~~~-----------------------------~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~ 1235 (1431)
T KOG1240|consen 1185 DAWRLKNQL-----------------------------RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEH 1235 (1431)
T ss_pred hHHhhhcCc-----------------------------cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccC
Confidence 555443211 11223344445555667788888877777632 00 1
Q ss_pred CCCCceEEEEEc---CC-CcEE-EEe-CCCeEEEEeC-CCCeeEeeecCCc--------cE------------EEEEec-
Q 001123 417 DDNRRTEALTTS---ID-GMIW-TGG-ANGLLLQWDP-NGNRLQDFQYLPF--------AV------------QCLCTF- 468 (1149)
Q Consensus 417 ~~~~~V~ava~s---~D-g~la-Sgs-~DgtIrlWD~-tG~~l~tl~gH~~--------~V------------~sls~d- 468 (1149)
.+..++..|... +. ...+ +|+ ..+.|-+|++ +|.|-++|...+. +. .|.-.+
T Consensus 1236 P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~ 1315 (1431)
T KOG1240|consen 1236 PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEK 1315 (1431)
T ss_pred cccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccC
Confidence 222445544433 32 2234 444 5788999999 8888777755311 11 111122
Q ss_pred CCEEEEeecCcEEEEEeCCC---c---------------------------eeee-------------------------
Q 001123 469 GSQIWVGYMNGIVQVLDLEG---N---------------------------LLGG------------------------- 493 (1149)
Q Consensus 469 G~~LaSGs~DGtIrlWD~~G---~---------------------------~l~~------------------------- 493 (1149)
+..+.+|+.|..||.||... . .+..
T Consensus 1316 ~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~ 1395 (1431)
T KOG1240|consen 1316 NGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPS 1395 (1431)
T ss_pred CceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCC
Confidence 57999999999999999431 1 0000
Q ss_pred --eeccCCCeEEEEe---cCCeEEeecCCCceeeee
Q 001123 494 --WVAHSSPVIKMAV---GAGYIFTLANHGGIRGWN 524 (1149)
Q Consensus 494 --l~gH~~~V~sLa~---Dg~~LaSgS~DgtIRlWd 524 (1149)
-..|.++|++|+. +-.+|+|+|.||.|++|.
T Consensus 1396 ~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1396 DPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred CCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 0137888888883 445899999999999994
No 192
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=1.7e-09 Score=129.55 Aligned_cols=207 Identities=11% Similarity=-0.026 Sum_probs=127.0
Q ss_pred CCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECC---CcEEEEeCCCcceeeecCCCcceee
Q 001123 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG---GGIKIWPWEAIEKALSLKPEERHTA 286 (1149)
Q Consensus 211 ~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~D---gTIRVWdl~t~~~~~~l~~~~~~~~ 286 (1149)
.+..|.+||.++.. ...+.+|.+.|.+.+|||||+ |+.+|.+ .+|++||+.+++.... ..
T Consensus 182 ~~~~i~i~d~dg~~---------~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~------ 245 (429)
T PRK01742 182 QPYEVRVADYDGFN---------QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-AS------ 245 (429)
T ss_pred ceEEEEEECCCCCC---------ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ec------
Confidence 46899999997643 456778999999999999997 7666543 4799999987643211 10
Q ss_pred EEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec--CCceE--EEEcCCccEEEEEecCCceeeEEeecc
Q 001123 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFA--LWDARTRELLKVFNIDGQIENRVDMSL 362 (1149)
Q Consensus 287 a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas--d~tIr--LWD~~TG~~L~~l~~~g~~~~~v~~S~ 362 (1149)
..++ .....+++++.+|+.+. ++.+. +||+.+++..+ +.
T Consensus 246 ----------~~g~-------------~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~-lt------------- 288 (429)
T PRK01742 246 ----------FRGH-------------NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQ-LT------------- 288 (429)
T ss_pred ----------CCCc-------------cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEe-ec-------------
Confidence 0001 11245667776665432 34444 44655543211 11
Q ss_pred CCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEE-eCCC
Q 001123 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTG-GANG 440 (1149)
Q Consensus 363 ~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSg-s~Dg 440 (1149)
.+...+....++|||. |+.+ ..++
T Consensus 289 ------------------------------------------------------~~~~~~~~~~wSpDG~~i~f~s~~~g 314 (429)
T PRK01742 289 ------------------------------------------------------SGAGNNTEPSWSPDGQSILFTSDRSG 314 (429)
T ss_pred ------------------------------------------------------cCCCCcCCEEECCCCCEEEEEECCCC
Confidence 0111123456889987 5544 4578
Q ss_pred eEEEEeC--CCCeeEeeecCCccEEEEEecCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEEEEecCCeEEeecCC
Q 001123 441 LLLQWDP--NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGAGYIFTLANH 517 (1149)
Q Consensus 441 tIrlWD~--tG~~l~tl~gH~~~V~sls~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa~Dg~~LaSgS~D 517 (1149)
..+||++ .+.....+ ++.....++++||++|+.++.++.+ +||+. |+.......+...-.+.++||++|+.++.+
T Consensus 315 ~~~I~~~~~~~~~~~~l-~~~~~~~~~SpDG~~ia~~~~~~i~-~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 315 SPQVYRMSASGGGASLV-GGRGYSAQISADGKTLVMINGDNVV-KQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQ 392 (429)
T ss_pred CceEEEEECCCCCeEEe-cCCCCCccCCCCCCEEEEEcCCCEE-EEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcC
Confidence 8899987 34433333 3333222457799999988887654 59976 554322222322223456899999999999
Q ss_pred Cceeeeecc
Q 001123 518 GGIRGWNVT 526 (1149)
Q Consensus 518 gtIRlWdl~ 526 (1149)
+.+++|.+.
T Consensus 393 g~~~~l~~~ 401 (429)
T PRK01742 393 GLGKVLQLV 401 (429)
T ss_pred CCceEEEEE
Confidence 999999874
No 193
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.14 E-value=4.1e-09 Score=113.87 Aligned_cols=231 Identities=14% Similarity=0.068 Sum_probs=149.1
Q ss_pred CCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc--EEEEECC-------CcEEEEeCCCcceeeecCCC
Q 001123 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEG-------GGIKIWPWEAIEKALSLKPE 281 (1149)
Q Consensus 211 ~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~--L~SGS~D-------gTIRVWdl~t~~~~~~l~~~ 281 (1149)
.|..|.+-+++.+.. . -....|.-|.|.|+.++-+|-.+ |+|+-.| ..+-||.+.-.......
T Consensus 38 ~dNqVhll~~d~e~s----~-l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~--- 109 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGS----E-LLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS--- 109 (370)
T ss_pred CcceeEEEEecCccc----h-hhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc---
Confidence 466677766665431 0 11334667889999999999764 5555442 25778987431110000
Q ss_pred cceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccE-EEEEecCCceeeEEee
Q 001123 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTREL-LKVFNIDGQIENRVDM 360 (1149)
Q Consensus 282 ~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~-L~~l~~~g~~~~~v~~ 360 (1149)
.....+. ..+. ..-+.++|+.+.+++.++++-.+..|.+|++..+.- ...+...+..
T Consensus 110 -~tlE~v~----~Ldt-----------eavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~------ 167 (370)
T KOG1007|consen 110 -STLECVA----SLDT-----------EAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESA------ 167 (370)
T ss_pred -chhhHhh----cCCH-----------HHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccc------
Confidence 0000000 0000 012578999999999999999899999999876532 1111100000
Q ss_pred ccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcC--CCcEEEEeC
Q 001123 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI--DGMIWTGGA 438 (1149)
Q Consensus 361 S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~--Dg~laSgs~ 438 (1149)
. +.....+-+++| ||..+....
T Consensus 168 ----e----------------------------------------------------~~~~ftsg~WspHHdgnqv~tt~ 191 (370)
T KOG1007|consen 168 ----E----------------------------------------------------MRHSFTSGAWSPHHDGNQVATTS 191 (370)
T ss_pred ----c----------------------------------------------------ccceecccccCCCCccceEEEeC
Confidence 0 000000111333 565555567
Q ss_pred CCeEEEEeC-CCCeeEee-ecCCccEEEEEecC---CEEEEeecCcEEEEEeCC--CceeeeeeccCCCeEEEEe---cC
Q 001123 439 NGLLLQWDP-NGNRLQDF-QYLPFAVQCLCTFG---SQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAV---GA 508 (1149)
Q Consensus 439 DgtIrlWD~-tG~~l~tl-~gH~~~V~sls~dG---~~LaSGs~DGtIrlWD~~--G~~l~~l~gH~~~V~sLa~---Dg 508 (1149)
|++++.||+ +.++.-.+ ..|...|..+.++. -+|++++.||.||+||.. ..+++++.+|+.+|++|.+ ..
T Consensus 192 d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hd 271 (370)
T KOG1007|consen 192 DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHD 271 (370)
T ss_pred CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccc
Confidence 999999999 65544333 46888899998763 489999999999999965 5689999999999999984 66
Q ss_pred CeEEeecCCCceeeeeccC
Q 001123 509 GYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 509 ~~LaSgS~DgtIRlWdl~s 527 (1149)
++|+|+|.|..|-+|...+
T Consensus 272 qLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 272 QLILSGGSDSAVNLSCASS 290 (370)
T ss_pred eEEEecCCCceeEEEeccc
Confidence 8999999999999998865
No 194
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.11 E-value=2e-09 Score=125.33 Aligned_cols=199 Identities=18% Similarity=0.127 Sum_probs=136.1
Q ss_pred CCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc--EEEEECCCcEEEE
Q 001123 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIW 267 (1149)
Q Consensus 191 ~~~V~~lafs~-dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~--L~SGS~DgTIRVW 267 (1149)
...|+.+.|+| |...||-|..||.|++|.+..+.+ ..+...+-..+.+|...|+++.|+|=.. |+++|.|.||+||
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl-~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGL-PENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCC-CcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence 46788999998 678999999999999999987553 2233334456899999999999999543 7899999999999
Q ss_pred eCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEE
Q 001123 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKV 347 (1149)
Q Consensus 268 dl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~ 347 (1149)
|++++..- +
T Consensus 706 Dl~~~~~~----------------------------------------~------------------------------- 714 (1012)
T KOG1445|consen 706 DLANAKLY----------------------------------------S------------------------------- 714 (1012)
T ss_pred ehhhhhhh----------------------------------------h-------------------------------
Confidence 98542100 0
Q ss_pred EecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEE
Q 001123 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (1149)
Q Consensus 348 l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~ 427 (1149)
.|.+|...|-.+++
T Consensus 715 ------------------------------------------------------------------~l~gHtdqIf~~AW 728 (1012)
T KOG1445|consen 715 ------------------------------------------------------------------RLVGHTDQIFGIAW 728 (1012)
T ss_pred ------------------------------------------------------------------eeccCcCceeEEEE
Confidence 03344455566789
Q ss_pred cCCCc-EEEEeCCCeEEEEeC-CC-CeeEeeecCC---ccEEEEEecCCEEEEeecC----cEEEEEeC---CCceeeee
Q 001123 428 SIDGM-IWTGGANGLLLQWDP-NG-NRLQDFQYLP---FAVQCLCTFGSQIWVGYMN----GIVQVLDL---EGNLLGGW 494 (1149)
Q Consensus 428 s~Dg~-laSgs~DgtIrlWD~-tG-~~l~tl~gH~---~~V~sls~dG~~LaSGs~D----GtIrlWD~---~G~~l~~l 494 (1149)
||||+ +|+.+.||+|+++.. .+ +.++.-.+-. ++--..+.+|++|++.+.| ..|.+||. ++..+.+.
T Consensus 729 SpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~ 808 (1012)
T KOG1445|consen 729 SPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQ 808 (1012)
T ss_pred CCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceee
Confidence 99997 899999999999998 44 4555443321 1222346789988887755 46888984 34544432
Q ss_pred e--ccCCC-eEEEEecCC-eEEeecCCCceeeeeccC
Q 001123 495 V--AHSSP-VIKMAVGAG-YIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 495 ~--gH~~~-V~sLa~Dg~-~LaSgS~DgtIRlWdl~s 527 (1149)
. -..++ |-....|.+ .++||=.|.+|.++.+.-
T Consensus 809 ~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 809 VLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred eecccCccccccccCCCceEEEecCCCceEEEEEecC
Confidence 2 11111 111113444 566888999999998743
No 195
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=1.6e-08 Score=122.96 Aligned_cols=275 Identities=19% Similarity=0.249 Sum_probs=147.6
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCC
Q 001123 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (1149)
Q Consensus 193 ~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t 271 (1149)
.+.|.+++|.++++|+|..||.|.+|.--+... .. .....|.=|.+.|++++||++|. |+||+..+..-+|.++|
T Consensus 207 ~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~---~~-~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 207 NITCVALSPNERYLAAGDSDGRILVWRDFGSSD---DS-ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred cceeEEeccccceEEEeccCCcEEEEecccccc---cc-ccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 378999999999999999999999998543110 00 12445566999999999999997 89999999999999999
Q ss_pred cceee-----------ecCCCcceeeEEEee-ecccccc-----ccccccceeee-------ecCCeEEEEEcC-CCCEE
Q 001123 272 IEKAL-----------SLKPEERHTAALIVE-RSYIDLR-----SHLSVNGFSSI-------LTSDIKNLLSDH-SRAKV 326 (1149)
Q Consensus 272 ~~~~~-----------~l~~~~~~~~a~~~~-~~~~~l~-----~~~~~~g~~~~-------~~~dv~~las~~-~~~~v 326 (1149)
+++.+ ...++... .++..+ .+...++ ...++.|.-.. +.+-...+..++ .+..+
T Consensus 283 ~~kqfLPRLgs~I~~i~vS~ds~~-~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v 361 (792)
T KOG1963|consen 283 GKKQFLPRLGSPILHIVVSPDSDL-YSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV 361 (792)
T ss_pred CCcccccccCCeeEEEEEcCCCCe-EEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence 66421 11222211 112111 1111111 11222333221 111234455666 34455
Q ss_pred EEecCCceEEEEcCCccEEEEEec------CCc----e-eeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccc
Q 001123 327 WSAGFLSFALWDARTRELLKVFNI------DGQ----I-ENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRS 395 (1149)
Q Consensus 327 ~Sasd~tIrLWD~~TG~~L~~l~~------~g~----~-~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~ 395 (1149)
..+-.++|.++|+.+.+.+..+.. ++. + +.++..+..+...+..+.. + ...........+.||+..
T Consensus 362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~--~-d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEAR--I-DKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeee--e-hhhhccCceEEEEEEEEc
Confidence 566678899999998887765532 111 0 0111111111111111100 0 000000011234444431
Q ss_pred cc----eEeecCCcEEEEeecccccCCCCceEE-EEEcCC-C-cEEEEeCCCeEEEEeCCC-----------CeeEeeec
Q 001123 396 RN----AIMGAADAVRRVAAKGGFGDDNRRTEA-LTTSID-G-MIWTGGANGLLLQWDPNG-----------NRLQDFQY 457 (1149)
Q Consensus 396 ~~----~i~G~~d~v~rv~~~g~~~~~~~~V~a-va~s~D-g-~laSgs~DgtIrlWD~tG-----------~~l~tl~g 457 (1149)
.+ .+. .++ -..|.....+ +..++. . +.++++.||.+|+|-.++ .|...-..
T Consensus 439 ~~~kt~~L~------T~I-----~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy 507 (792)
T KOG1963|consen 439 PNSKTFILN------TKI-----NNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY 507 (792)
T ss_pred CCcceeEEE------EEE-----ecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc
Confidence 00 000 011 1122222222 222222 2 578999999999998732 23322224
Q ss_pred CCccEEEEEe--cCCEEEEeecCcEEEEEeCC
Q 001123 458 LPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 458 H~~~V~sls~--dG~~LaSGs~DGtIrlWD~~ 487 (1149)
|..++++.++ ||+.|++| .|++|.+||-.
T Consensus 508 ~k~~i~a~~fs~dGslla~s-~~~~Itiwd~~ 538 (792)
T KOG1963|consen 508 HKTPITALCFSQDGSLLAVS-FDDTITIWDYD 538 (792)
T ss_pred ccCcccchhhcCCCcEEEEe-cCCEEEEecCC
Confidence 7778887766 67766654 67799999954
No 196
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=1.3e-09 Score=124.62 Aligned_cols=270 Identities=17% Similarity=0.193 Sum_probs=174.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEe-ecCCCCEEEEEEeCCC---cEEEEECCCcEEE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYG---DLWSGSEGGGIKI 266 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l-~GH~~~VtsVafSpdG---~L~SGS~DgTIRV 266 (1149)
.+-|+.|.|+..|..|+|||.|.+|.+||-..+. ..+.| .||...|.--.|-|.. .|+++|.||.||+
T Consensus 142 ~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~--------~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 142 KGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS--------PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred CCccceeeecccCceeeccCccceEEeehhhccC--------cccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 7889999999999999999999999999987754 23444 5798888888887754 4999999999999
Q ss_pred EeCCC-cc--eeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCC-EEEEe-cCCceEEEEcCC
Q 001123 267 WPWEA-IE--KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSA-GFLSFALWDART 341 (1149)
Q Consensus 267 Wdl~t-~~--~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~-~v~Sa-sd~tIrLWD~~T 341 (1149)
=.+.. +. ....+.++. +.+.-++..++.. .+.|+ .|..+.-.|+++
T Consensus 214 s~i~~t~~~e~t~rl~~h~-----------------------------g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~ 264 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHE-----------------------------GPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQ 264 (559)
T ss_pred eeeccccceecceeccccc-----------------------------CccceeeecCCCCCcccccccccceeeeeecc
Confidence 76532 11 111111111 2333344444332 23333 355566777776
Q ss_pred ccEEEEEec---CCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeecccc-ceEeecCCcEEEEeec-----
Q 001123 342 RELLKVFNI---DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR-NAIMGAADAVRRVAAK----- 412 (1149)
Q Consensus 342 G~~L~~l~~---~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~-~~i~G~~d~v~rv~~~----- 412 (1149)
+..-.++.- +... ++ ...+++..|... ...+|..+-..|+++.
T Consensus 265 ~~pa~~~~cr~~~~~~--~v--------------------------~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~ 316 (559)
T KOG1334|consen 265 DVPAEKFVCREADEKE--RV--------------------------GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDK 316 (559)
T ss_pred CCccceeeeeccCCcc--ce--------------------------eeeeEecCCCCccccccCChhhhhhhhcccchhh
Confidence 654333320 1100 00 001112222221 2223333333333321
Q ss_pred -------cccc------CCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC---CC----------CeeE-eeecCCc--cE
Q 001123 413 -------GGFG------DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP---NG----------NRLQ-DFQYLPF--AV 462 (1149)
Q Consensus 413 -------g~~~------~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~---tG----------~~l~-tl~gH~~--~V 462 (1149)
..|. .....|++++++.++. ++++..|-.|.++.. .| ..+. .++||.. .|
T Consensus 317 e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TV 396 (559)
T KOG1334|consen 317 EENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTV 396 (559)
T ss_pred ccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccccccc
Confidence 0111 2334688999997754 888899999999966 25 2233 3788875 47
Q ss_pred EEEEecC---CEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEEEEecCC--eEEeecCCCceeeeec
Q 001123 463 QCLCTFG---SQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGAG--YIFTLANHGGIRGWNV 525 (1149)
Q Consensus 463 ~sls~dG---~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa~Dg~--~LaSgS~DgtIRlWdl 525 (1149)
..+.|.| .|++|||.-|.|-+||-. +++|+-+.|-..-|++|.+.+- .|||.|.|.-||||.-
T Consensus 397 KgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 397 KGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred ceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence 7777776 799999999999999975 7899999998889999996554 6899999999999975
No 197
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=2.3e-08 Score=119.87 Aligned_cols=208 Identities=11% Similarity=0.051 Sum_probs=124.2
Q ss_pred CCceEEEEEcCCCCEEEEEe---CCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EE-EEECCC--c
Q 001123 191 VSSVMCMVGDEASGVVWSGH---RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGG--G 263 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS---~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~-SGS~Dg--T 263 (1149)
...+.+.+|||||+.|+..+ .+..|.+|++.+|.. ..+..+.+| +.+++|||||+ |+ +.+.++ .
T Consensus 198 ~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~------~~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~ 268 (429)
T PRK03629 198 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV------RQVASFPRH---NGAPAFSPDGSKLAFALSKTGSLN 268 (429)
T ss_pred CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe------EEccCCCCC---cCCeEECCCCCEEEEEEcCCCCcE
Confidence 45788999999999988654 345799999988651 112223444 55689999997 54 555565 4
Q ss_pred EEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecC--CceEEE--Ec
Q 001123 264 IKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALW--DA 339 (1149)
Q Consensus 264 IRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd--~tIrLW--D~ 339 (1149)
|.+||+++++.. .++... .......+++++..++.+++ +...|| |+
T Consensus 269 I~~~d~~tg~~~-~lt~~~-----------------------------~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~ 318 (429)
T PRK03629 269 LYVMDLASGQIR-QVTDGR-----------------------------SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI 318 (429)
T ss_pred EEEEECCCCCEE-EccCCC-----------------------------CCcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence 888898765422 111110 11223445666666654433 233444 44
Q ss_pred CCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCC
Q 001123 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (1149)
Q Consensus 340 ~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~ 419 (1149)
.+|+..+ +... .
T Consensus 319 ~~g~~~~-lt~~-------------------------------------------------------------------~ 330 (429)
T PRK03629 319 NGGAPQR-ITWE-------------------------------------------------------------------G 330 (429)
T ss_pred CCCCeEE-eecC-------------------------------------------------------------------C
Confidence 4433211 1000 0
Q ss_pred CceEEEEEcCCCc-EEEEeC-C--CeEEEEeC-CCCeeEeeec-CCccEEEEEecCCEEEEeecCcE---EEEEeCCCce
Q 001123 420 RRTEALTTSIDGM-IWTGGA-N--GLLLQWDP-NGNRLQDFQY-LPFAVQCLCTFGSQIWVGYMNGI---VQVLDLEGNL 490 (1149)
Q Consensus 420 ~~V~ava~s~Dg~-laSgs~-D--gtIrlWD~-tG~~l~tl~g-H~~~V~sls~dG~~LaSGs~DGt---IrlWD~~G~~ 490 (1149)
.......++|||. |+..+. + ..|.+||+ +|+ .+.+.. +...--++++||++|+.++.++. +++|+++|+.
T Consensus 331 ~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~-~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 331 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-VQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC-eEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 0112345788876 554433 2 35889999 454 344432 22222356789999999998764 7888899988
Q ss_pred eeeeeccCCCeEEEEe
Q 001123 491 LGGWVAHSSPVIKMAV 506 (1149)
Q Consensus 491 l~~l~gH~~~V~sLa~ 506 (1149)
...+.+|.+.+...++
T Consensus 410 ~~~l~~~~~~~~~p~W 425 (429)
T PRK03629 410 KARLPATDGQVKFPAW 425 (429)
T ss_pred eEECccCCCCcCCccc
Confidence 8888888887766554
No 198
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=5.4e-08 Score=106.43 Aligned_cols=260 Identities=15% Similarity=0.139 Sum_probs=160.2
Q ss_pred CCeEEEe-CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001123 142 EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (1149)
Q Consensus 142 ~~~l~ag-~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl 220 (1149)
+..|..| .||.|-+||+.|-...+. + +.| ..+|.|+++|+||+.|.|+|+|-.|++||+
T Consensus 35 G~~lAvGc~nG~vvI~D~~T~~iar~-----------------l--saH-~~pi~sl~WS~dgr~LltsS~D~si~lwDl 94 (405)
T KOG1273|consen 35 GDYLAVGCANGRVVIYDFDTFRIARM-----------------L--SAH-VRPITSLCWSRDGRKLLTSSRDWSIKLWDL 94 (405)
T ss_pred cceeeeeccCCcEEEEEccccchhhh-----------------h--hcc-ccceeEEEecCCCCEeeeecCCceeEEEec
Confidence 4444444 599999999987654432 1 234 789999999999999999999999999999
Q ss_pred CCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-E-EEEECCCcEEEEeCCCcce-eeecCCCcceeeEEEeeeccccc
Q 001123 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEK-ALSLKPEERHTAALIVERSYIDL 297 (1149)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L-~SGS~DgTIRVWdl~t~~~-~~~l~~~~~~~~a~~~~~~~~~l 297 (1149)
..|.+ .+.++ -..+|+.+.|.|-.+ . +..=.+..--+=++..... .+....+. ++
T Consensus 95 ~~gs~--------l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~-------------dl 152 (405)
T KOG1273|consen 95 LKGSP--------LKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDG-------------DL 152 (405)
T ss_pred cCCCc--------eeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcc-------------cc
Confidence 88763 33322 467999999998653 2 2222222222333321110 01000000 00
Q ss_pred cccccccceeeeecCCeEEEEEcCCCCEEEEecC-CceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeE
Q 001123 298 RSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKI 376 (1149)
Q Consensus 298 ~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd-~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~ 376 (1149)
+ ..-.+..++..|..+.++.. +-+.++|+.|-+|+..|.....
T Consensus 153 ------n-------~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~----------------------- 196 (405)
T KOG1273|consen 153 ------N-------SSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSV----------------------- 196 (405)
T ss_pred ------c-------cccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechh-----------------------
Confidence 0 00111245566777777755 4588999999988887753220
Q ss_pred EecCCCCccceeeeeeccccceEeecCCcEEEEeeccccc--CCCC---------------ceEEEEEcCCCc-EEEEe-
Q 001123 377 VTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFG--DDNR---------------RTEALTTSIDGM-IWTGG- 437 (1149)
Q Consensus 377 ~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~--~~~~---------------~V~ava~s~Dg~-laSgs- 437 (1149)
..+..+-|...++.++....|-+.|......+. +... .=.++.||.||. +.+|+
T Consensus 197 -------~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~ 269 (405)
T KOG1273|consen 197 -------QAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSA 269 (405)
T ss_pred -------eeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccc
Confidence 112234556667778888888888876522110 0111 112466888886 44443
Q ss_pred CCCeEEEEeC-CCCeeEeeecCCc-cEEEEEec--CCEEEEeecCcEEEEEeCC
Q 001123 438 ANGLLLQWDP-NGNRLQDFQYLPF-AVQCLCTF--GSQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 438 ~DgtIrlWD~-tG~~l~tl~gH~~-~V~sls~d--G~~LaSGs~DGtIrlWD~~ 487 (1149)
.-..+.||.. .|..++.|.|-.+ ....+... -..|++- +.|+|++|...
T Consensus 270 ~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 270 RAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred cceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 3568999999 7999999988764 34455543 3445554 78999999853
No 199
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.99 E-value=1.1e-07 Score=109.50 Aligned_cols=239 Identities=10% Similarity=0.116 Sum_probs=135.3
Q ss_pred eCCeEEEe--CCCCEEEEeCCC-CCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeC-CCeEE
Q 001123 141 TEEQLWAG--GENGLRVWNLKE-LYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR-DGRIM 216 (1149)
Q Consensus 141 ~~~~l~ag--~D~tVrvWd~~~-g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~-DGtIR 216 (1149)
+.+.|+++ .++.|.+|++.+ +..... ....-.+....++|+|+|++|++++. ++.|.
T Consensus 45 d~~~lyv~~~~~~~i~~~~~~~~g~l~~~-------------------~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~ 105 (330)
T PRK11028 45 DKRHLYVGVRPEFRVLSYRIADDGALTFA-------------------AESPLPGSPTHISTDHQGRFLFSASYNANCVS 105 (330)
T ss_pred CCCEEEEEECCCCcEEEEEECCCCceEEe-------------------eeecCCCCceEEEECCCCCEEEEEEcCCCeEE
Confidence 35667664 378899999862 221100 00000123457999999999888874 89999
Q ss_pred EEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-E-EEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeecc
Q 001123 217 CWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSY 294 (1149)
Q Consensus 217 vWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L-~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~ 294 (1149)
+|+++... ........+.++ ....+++|+|+|+ | ++...+++|++||+++..... .........
T Consensus 106 v~~~~~~g----~~~~~~~~~~~~-~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~---~~~~~~~~~------ 171 (330)
T PRK11028 106 VSPLDKDG----IPVAPIQIIEGL-EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV---AQEPAEVTT------ 171 (330)
T ss_pred EEEECCCC----CCCCceeeccCC-CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc---ccCCCceec------
Confidence 99996421 011112223333 3456789999997 5 466678999999997622111 000000000
Q ss_pred ccccccccccceeeeecCCeEEEEEcCCCCEEEEec--CCceEEEEcCC--ccE--EEEEecCCceeeEEeeccCCCccc
Q 001123 295 IDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDART--REL--LKVFNIDGQIENRVDMSLLPDFAM 368 (1149)
Q Consensus 295 ~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas--d~tIrLWD~~T--G~~--L~~l~~~g~~~~~v~~S~~~~~~~ 368 (1149)
........+++++++..++.+. +++|.+||+.. |+. +..+..
T Consensus 172 --------------~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~------------------ 219 (330)
T PRK11028 172 --------------VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDM------------------ 219 (330)
T ss_pred --------------CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEec------------------
Confidence 0012234567778888877664 57899999873 322 111100
Q ss_pred cccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEe-CCCeEEEEe
Q 001123 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG-ANGLLLQWD 446 (1149)
Q Consensus 369 ~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs-~DgtIrlWD 446 (1149)
. .. .+.+ ......+.++|||+ ++++. .+++|.+|+
T Consensus 220 --------~--p~--------------------------------~~~~-~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~ 256 (330)
T PRK11028 220 --------M--PA--------------------------------DFSD-TRWAADIHITPDGRHLYACDRTASLISVFS 256 (330)
T ss_pred --------C--CC--------------------------------cCCC-CccceeEEECCCCCEEEEecCCCCeEEEEE
Confidence 0 00 0000 01122466889987 66654 478999999
Q ss_pred C--CCCe---eEeeecCCc-cEEEEEecCCEEEEeec-CcEEEEEeCC
Q 001123 447 P--NGNR---LQDFQYLPF-AVQCLCTFGSQIWVGYM-NGIVQVLDLE 487 (1149)
Q Consensus 447 ~--tG~~---l~tl~gH~~-~V~sls~dG~~LaSGs~-DGtIrlWD~~ 487 (1149)
+ ++.. ++....... .-..++++|++|+++.. +++|.+|+++
T Consensus 257 i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 257 VSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 8 3322 222221111 11245568999998875 8999999864
No 200
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.97 E-value=3.9e-08 Score=121.40 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=95.4
Q ss_pred ccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeE-eeecCCccEEEEEecCCEEEEeecCcEEEEEeCCCcee
Q 001123 415 FGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQ-DFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLL 491 (1149)
Q Consensus 415 ~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~-tl~gH~~~V~sls~dG~~LaSGs~DGtIrlWD~~G~~l 491 (1149)
+.+|...+-++.++.||. +++.|.|.++|+|++ +++.+. +.-+|+..|..+.+...+|++++.|.|.++|+.+|..+
T Consensus 171 l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~~~~l 250 (967)
T KOG0974|consen 171 LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVNGTQL 250 (967)
T ss_pred ecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEeccceEEEEEeccccee
Confidence 345556666777888876 899999999999999 676665 77899999998887666999999999999999999988
Q ss_pred eeeeccCC-CeEEEEe--cCCeEEeecCCCceeeeeccC
Q 001123 492 GGWVAHSS-PVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 492 ~~l~gH~~-~V~sLa~--Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
.++.+|.+ .|+.++. +.-.++|++.|+++|+|++..
T Consensus 251 ~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 251 EVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred hhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 89999986 7888873 455788999999999999864
No 201
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.95 E-value=1.6e-08 Score=108.40 Aligned_cols=251 Identities=16% Similarity=0.155 Sum_probs=141.4
Q ss_pred ceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecC
Q 001123 233 EVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTS 312 (1149)
Q Consensus 233 ~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~ 312 (1149)
+...|++|.+.|+++.|..+++|++|..-|.|++|++++......+..... .
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~----------------------------~ 57 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGR----------------------------L 57 (323)
T ss_pred CeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhcc----------------------------c
Confidence 456778999999999999999999999999999999987543322211100 0
Q ss_pred CeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEecCCceeeEEeec-----cCCCccccccceeeEEecCCCCccce
Q 001123 313 DIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMS-----LLPDFAMEDEFKTKIVTSSKKDKAQS 387 (1149)
Q Consensus 313 dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S-----~~~~~~~~~~~~~~~~s~~~k~~~~~ 387 (1149)
-+..+-.-+++..+.-+.|..+.+|++.-+..+..- .-+++++.|- +..... ++
T Consensus 58 ~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~---Si~~nslgFCrfSl~~~~k~~-eq----------------- 116 (323)
T KOG0322|consen 58 FITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIH---SIVVNSLGFCRFSLVKKPKNS-EQ----------------- 116 (323)
T ss_pred eeeceeecCCcchhhcCCCceEEEEEccCcceEEEe---eeeccccccccceeccCCCcc-hh-----------------
Confidence 011122223222222334567889998766544332 1122222221 111111 00
Q ss_pred eeeeeccc----cceEeecCCcEEEEeecccccCCCCceEEEEE-cCCC-c--EEEEeCCCeEEEEeC-CCCee------
Q 001123 388 SFGFFQRS----RNAIMGAADAVRRVAAKGGFGDDNRRTEALTT-SIDG-M--IWTGGANGLLLQWDP-NGNRL------ 452 (1149)
Q Consensus 388 si~f~~~~----~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~-s~Dg-~--laSgs~DgtIrlWD~-tG~~l------ 452 (1149)
..+.+.. .+..-+....-.++.+.. -..+...+.+... ..++ + +++|.++|.|.+||+ +|..+
T Consensus 117 -ll~yp~rgsde~h~~D~g~~tqv~i~dd~-~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~ 194 (323)
T KOG0322|consen 117 -LLEYPSRGSDETHKQDGGDTTQVQIADDS-ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQS 194 (323)
T ss_pred -heecCCcccchhhhhccCccceeEccCch-hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccc
Confidence 0011100 000001111111111110 0112223333331 1222 2 578999999999999 66332
Q ss_pred ----EeeecCCccEEEEEecC--CEEEEeecCcEEEEEeCC---Cce--eeeeeccCCCeEEEE--ecCCeEEeecCCCc
Q 001123 453 ----QDFQYLPFAVQCLCTFG--SQIWVGYMNGIVQVLDLE---GNL--LGGWVAHSSPVIKMA--VGAGYIFTLANHGG 519 (1149)
Q Consensus 453 ----~tl~gH~~~V~sls~dG--~~LaSGs~DGtIrlWD~~---G~~--l~~l~gH~~~V~sLa--~Dg~~LaSgS~Dgt 519 (1149)
.....|..+|.++.++. .+=++|+.+-.+-.|.+. |.+ -....--.-.|..+. +|++.+|||++|+-
T Consensus 195 ~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~R 274 (323)
T KOG0322|consen 195 SKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHR 274 (323)
T ss_pred cccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCc
Confidence 33345889999998763 456789999999999965 433 122222334455554 79999999999999
Q ss_pred eeeeeccCCCCCchh
Q 001123 520 IRGWNVTSPGPLDSI 534 (1149)
Q Consensus 520 IRlWdl~sp~pld~~ 534 (1149)
||+++-.+..|+--+
T Consensus 275 iRVyswrtl~pLAVL 289 (323)
T KOG0322|consen 275 IRVYSWRTLNPLAVL 289 (323)
T ss_pred EEEEEeccCCchhhh
Confidence 999998888887543
No 202
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=9.4e-08 Score=114.70 Aligned_cols=206 Identities=12% Similarity=0.008 Sum_probs=122.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-E-EEEECCC--c
Q 001123 191 VSSVMCMVGDEASGVVWSGHRD---GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGG--G 263 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~D---GtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L-~SGS~Dg--T 263 (1149)
...+.+.+|+|||+.|+..+.+ ..|.+||+.++. ...+..+.+.+.+++|||||+ | ++.+.++ .
T Consensus 203 ~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~---------~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~ 273 (433)
T PRK04922 203 AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ---------RELVASFRGINGAPSFSPDGRRLALTLSRDGNPE 273 (433)
T ss_pred CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC---------EEEeccCCCCccCceECCCCCEEEEEEeCCCCce
Confidence 4578899999999999988744 469999998765 333444555566889999997 5 4667666 5
Q ss_pred EEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecC--Cc--eEEEEc
Q 001123 264 IKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LS--FALWDA 339 (1149)
Q Consensus 264 IRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd--~t--IrLWD~ 339 (1149)
|.+||+.+++.. .++.+. .......+++++..++..++ +. |.++|+
T Consensus 274 Iy~~d~~~g~~~-~lt~~~-----------------------------~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl 323 (433)
T PRK04922 274 IYVMDLGSRQLT-RLTNHF-----------------------------GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAA 323 (433)
T ss_pred EEEEECCCCCeE-ECccCC-----------------------------CCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 999998775421 121110 00112345566665554432 22 444555
Q ss_pred CCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCC
Q 001123 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (1149)
Q Consensus 340 ~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~ 419 (1149)
.+|+..+.. +.+
T Consensus 324 ~~g~~~~lt------------------------------------------------------------------~~g-- 335 (433)
T PRK04922 324 SGGSAERLT------------------------------------------------------------------FQG-- 335 (433)
T ss_pred CCCCeEEee------------------------------------------------------------------cCC--
Confidence 444321110 000
Q ss_pred CceEEEEEcCCCc-EEEEeCC---CeEEEEeC-CCCeeEeeecC-CccEEEEEecCCEEEEeecC---cEEEEEeCCCce
Q 001123 420 RRTEALTTSIDGM-IWTGGAN---GLLLQWDP-NGNRLQDFQYL-PFAVQCLCTFGSQIWVGYMN---GIVQVLDLEGNL 490 (1149)
Q Consensus 420 ~~V~ava~s~Dg~-laSgs~D---gtIrlWD~-tG~~l~tl~gH-~~~V~sls~dG~~LaSGs~D---GtIrlWD~~G~~ 490 (1149)
......+++|||. |+..+.+ ..|.+||+ +|+. +.+... ...-.++++||++|+..+.+ +.|.++|++|..
T Consensus 336 ~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~-~~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 336 NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV-RTLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe-EECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 0011345788886 5543333 26999999 5554 344422 11112557789988877653 478888998877
Q ss_pred eeeeeccCCCeEEE
Q 001123 491 LGGWVAHSSPVIKM 504 (1149)
Q Consensus 491 l~~l~gH~~~V~sL 504 (1149)
...+..+.+.+...
T Consensus 415 ~~~l~~~~g~~~~p 428 (433)
T PRK04922 415 RQRLVSADGEVREP 428 (433)
T ss_pred eEEcccCCCCCCCC
Confidence 77776665555443
No 203
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=1.5e-07 Score=114.58 Aligned_cols=281 Identities=12% Similarity=0.112 Sum_probs=155.9
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc----EEEEECCCcEEEEeCCC
Q 001123 196 CMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD----LWSGSEGGGIKIWPWEA 271 (1149)
Q Consensus 196 ~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~----L~SGS~DgTIRVWdl~t 271 (1149)
.-.||+|++.++-. .+..|+|+...+|.| +..|.+|+.+++++.+.|... ++++|.||+|++||+..
T Consensus 21 ~avfSnD~k~l~~~-~~~~V~VyS~~Tg~~--------i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~ 91 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLC-TGNFVKVYSTATGEC--------ITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSD 91 (792)
T ss_pred ccccccCCcEEEEe-eCCEEEEEecchHhh--------hhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCC
Confidence 34689999888754 466899999999886 678999999999999987653 67999999999999987
Q ss_pred cceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec---CCceEEEEcCC--ccEEE
Q 001123 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALWDART--RELLK 346 (1149)
Q Consensus 272 ~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas---d~tIrLWD~~T--G~~L~ 346 (1149)
++...++.....-.+.+. -....+.. .....+.+..+. +...+ ..+++-..+.+ .....
T Consensus 92 ~~Llkt~~~~~~v~~~~~-~~~~a~~s-------~~~~~s~~~~~~--------~~~~s~~~~~q~~~~~~~t~~~~~~d 155 (792)
T KOG1963|consen 92 GELLKTFDNNLPVHALVY-KPAQADIS-------ANVYVSVEDYSI--------LTTFSKKLSKQSSRFVLATFDSAKGD 155 (792)
T ss_pred cEEEEEEecCCceeEEEe-chhHhCcc-------ceeEeeccccee--------eeecccccccceeeeEeeeccccchh
Confidence 665444332211111110 00000000 000011111111 11010 01122222111 11111
Q ss_pred EEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEE
Q 001123 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (1149)
Q Consensus 347 ~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava 426 (1149)
.+..+.. ...+...+.+....-. +++.. .+.+.+.......+.. .-..|...+.+++
T Consensus 156 ~~~~~~~-~~~I~~~~~ge~~~i~-----------~~~~~-~~~~v~~~~~~~~~~~----------~~~~Htf~~t~~~ 212 (792)
T KOG1963|consen 156 FLKEHQE-PKSIVDNNSGEFKGIV-----------HMCKI-HIYFVPKHTKHTSSRD----------ITVHHTFNITCVA 212 (792)
T ss_pred hhhhhcC-CccEEEcCCceEEEEE-----------EeeeE-EEEEecccceeeccch----------hhhhhcccceeEE
Confidence 1222211 1111222211111100 00000 0000000000000000 0123444578899
Q ss_pred EcCCCc-EEEEeCCCeEEEEeCCC-----CeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-Cceeeeeecc
Q 001123 427 TSIDGM-IWTGGANGLLLQWDPNG-----NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH 497 (1149)
Q Consensus 427 ~s~Dg~-laSgs~DgtIrlWD~tG-----~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH 497 (1149)
++|.+. +|+|..||.|.+|.--| .-.+.|.=|..+|+++++ +|.+|+||+..|.+-+|.++ ++ .+-|.-=
T Consensus 213 ~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRL 291 (792)
T KOG1963|consen 213 LSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRL 291 (792)
T ss_pred eccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-ccccccc
Confidence 999987 78899999999998633 234556668889998865 79999999999999999986 33 3333333
Q ss_pred CCCeEEEE--ecCCeEEeecCCCceeeeec
Q 001123 498 SSPVIKMA--VGAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 498 ~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl 525 (1149)
.++|..+. +|+.+.+..-.|+.|-+=..
T Consensus 292 gs~I~~i~vS~ds~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 292 GSPILHIVVSPDSDLYSLVLEDNQIHLIKA 321 (792)
T ss_pred CCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence 56787776 68888777777998887764
No 204
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.88 E-value=1.5e-07 Score=117.42 Aligned_cols=244 Identities=18% Similarity=0.124 Sum_probs=137.3
Q ss_pred ceEEeecCCCCEEEEEEeCCC-c-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeee
Q 001123 233 EVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSIL 310 (1149)
Q Consensus 233 ~~~~l~GH~~~VtsVafSpdG-~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~ 310 (1149)
.+..|..|+..|..++.+++. . ++|||.|||||+|++..... +.....+ +. +....
T Consensus 1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~------~~~s~rS---~l-------------tys~~ 1097 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEG------EGGSARS---EL-------------TYSPE 1097 (1431)
T ss_pred EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhc------Ccceeee---eE-------------EEecc
Confidence 366788899999999998765 4 68999999999999854211 1000000 00 00012
Q ss_pred cCCeEEEEEcCCCCEEE-EecCCceEEEEcCCccEEEE-------E--ecCCceeeEEeeccCCCccccccceeeEEecC
Q 001123 311 TSDIKNLLSDHSRAKVW-SAGFLSFALWDARTRELLKV-------F--NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSS 380 (1149)
Q Consensus 311 ~~dv~~las~~~~~~v~-Sasd~tIrLWD~~TG~~L~~-------l--~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~ 380 (1149)
.+.+.++.....+..++ ++.|+.|++-++..-+.-+. . ..+|.++
T Consensus 1098 ~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv------------------------- 1152 (1431)
T KOG1240|consen 1098 GSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVV------------------------- 1152 (1431)
T ss_pred CCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceE-------------------------
Confidence 24455666555555444 45577788877754211110 0 0111111
Q ss_pred CCCccceeeeeeccc-c-ceEeecCCcEEEEeec--------ccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-C
Q 001123 381 KKDKAQSSFGFFQRS-R-NAIMGAADAVRRVAAK--------GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-N 448 (1149)
Q Consensus 381 ~k~~~~~si~f~~~~-~-~~i~G~~d~v~rv~~~--------g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-t 448 (1149)
.-.+|.... . .++.+..-+....|+. -.+....+-|.+++.+|.+. ++.|...|.+.+||+ =
T Consensus 1153 ------~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1153 ------SMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF 1226 (1431)
T ss_pred ------EeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeec
Confidence 000111100 0 1111111121222221 12334456788999999987 679999999999999 4
Q ss_pred CCeeEeeec-CCccEEEEEec---C--CEEEEee--cCcEEEEEeCC-Cceeeeeecc--------CCCe----------
Q 001123 449 GNRLQDFQY-LPFAVQCLCTF---G--SQIWVGY--MNGIVQVLDLE-GNLLGGWVAH--------SSPV---------- 501 (1149)
Q Consensus 449 G~~l~tl~g-H~~~V~sls~d---G--~~LaSGs--~DGtIrlWD~~-G~~l~~l~gH--------~~~V---------- 501 (1149)
+..+..+.. +..+|.-++.+ + ..+++++ .-+-|.+|+.+ |.+..++..- ..+.
T Consensus 1227 ~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~ 1306 (1431)
T KOG1240|consen 1227 RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLA 1306 (1431)
T ss_pred CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCccc
Confidence 677766643 44667755432 3 5666555 46789999976 6554444432 1111
Q ss_pred --EEEEe-cCCeEEeecCCCceeeeeccCCC
Q 001123 502 --IKMAV-GAGYIFTLANHGGIRGWNVTSPG 529 (1149)
Q Consensus 502 --~sLa~-Dg~~LaSgS~DgtIRlWdl~sp~ 529 (1149)
.+.-. .+..+.+|+.|..||.||...|.
T Consensus 1307 ~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1307 GISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred ceeeecccCCceeeecCCccceeeccCCCcc
Confidence 11112 34578899999999999987653
No 205
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.85 E-value=1.3e-07 Score=102.73 Aligned_cols=112 Identities=13% Similarity=0.065 Sum_probs=83.9
Q ss_pred cCCCCceEEEEEcCCCc--EEEEeCCCeEEEEeCCCC----eeEeeecCCccEEEEEe---cCCEEEEeec-CcEEEEEe
Q 001123 416 GDDNRRTEALTTSIDGM--IWTGGANGLLLQWDPNGN----RLQDFQYLPFAVQCLCT---FGSQIWVGYM-NGIVQVLD 485 (1149)
Q Consensus 416 ~~~~~~V~ava~s~Dg~--laSgs~DgtIrlWD~tG~----~l~tl~gH~~~V~sls~---dG~~LaSGs~-DGtIrlWD 485 (1149)
..|...|..++|..++. +||.+.||.||++|+... .+.+-.....+..-+++ |-+++|+-.. ...|.+.|
T Consensus 193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD 272 (364)
T ss_pred EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence 34556667777877654 789999999999999432 22221111345666665 4578876554 46899999
Q ss_pred CC--CceeeeeeccCCCeEEEEe---cCCeEEeecCCCceeeeeccC
Q 001123 486 LE--GNLLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 486 ~~--G~~l~~l~gH~~~V~sLa~---Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
+. +..+..|++|.+.|+++++ .+..|.|||.|..+-+||+..
T Consensus 273 iR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 273 IRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred ecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 76 7889999999999999983 567899999999999999965
No 206
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=2.6e-07 Score=103.02 Aligned_cols=286 Identities=14% Similarity=0.082 Sum_probs=160.5
Q ss_pred eeEEEEEee-CCeEEE-e-CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEE
Q 001123 133 CFLRTIVCT-EEQLWA-G-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (1149)
Q Consensus 133 ~~l~~l~~~-~~~l~a-g-~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSG 209 (1149)
-|+.+|... ++++.+ | .|..++||+++.....++ .....+.+.-| .+.|.||+|+..++.|+||
T Consensus 57 GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~------------~KPI~~~~~~H-~SNIF~L~F~~~N~~~~SG 123 (609)
T KOG4227|consen 57 GCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT------------PKPIGVMEHPH-RSNIFSLEFDLENRFLYSG 123 (609)
T ss_pred cccceeeeccCCeEEeecCCcceeeeechHHHHhhcC------------CCCceeccCcc-ccceEEEEEccCCeeEecC
Confidence 477788876 555555 3 477799999986543332 11111112122 6889999999999999999
Q ss_pred eCCCeEEEEECCCCCCCCCCCccceEEeecC---CCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCccee
Q 001123 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAH---RGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (1149)
Q Consensus 210 S~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH---~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~ 285 (1149)
..|++|..-|+++.+ ..-...| ++.|+.|..+|... |++.+.|+.|-+||....+. +.
T Consensus 124 ~~~~~VI~HDiEt~q---------si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~---------~~ 185 (609)
T KOG4227|consen 124 ERWGTVIKHDIETKQ---------SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN---------PI 185 (609)
T ss_pred CCcceeEeeecccce---------eeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC---------CC
Confidence 999999999999854 2223345 56999999999654 88999999999999865321 11
Q ss_pred eEEEeeeccccccccccccceeeeecCCeEEEEEcCCC-CEEEEec-CCceEEEEcCCccE-EEE---EecCCc--ee-e
Q 001123 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTREL-LKV---FNIDGQ--IE-N 356 (1149)
Q Consensus 286 ~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~-~~v~Sas-d~tIrLWD~~TG~~-L~~---l~~~g~--~~-~ 356 (1149)
.-+.....+ .....+.+.+.. .+++.++ -+.+-|||.+-.+. +.. +.+=.+ .. .
T Consensus 186 ~~~~~AN~~-----------------~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M 248 (609)
T KOG4227|consen 186 SLVLPANSG-----------------KNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWM 248 (609)
T ss_pred ceeeecCCC-----------------ccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhh
Confidence 101000000 001111122221 1222222 24578999864321 100 100000 00 1
Q ss_pred EEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEe-e-cccccCCCCceEEEEEcCCCcEE
Q 001123 357 RVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVA-A-KGGFGDDNRRTEALTTSIDGMIW 434 (1149)
Q Consensus 357 ~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~-~-~g~~~~~~~~V~ava~s~Dg~la 434 (1149)
.+.+++++.+.... .+..+++ .|.-.+.... |.... . .|.+ ....+.+..|..|-.++
T Consensus 249 ~~~~~~~G~Q~msi---------RR~~~P~---~~D~~S~R~~------V~k~D~N~~GY~--N~~T~KS~~F~~D~~v~ 308 (609)
T KOG4227|consen 249 GSLWSPSGNQFMSI---------RRGKCPL---YFDFISQRCF------VLKSDHNPNGYC--NIKTIKSMTFIDDYTVA 308 (609)
T ss_pred heeeCCCCCeehhh---------hccCCCE---Eeeeecccce------eEeccCCCCcce--eeeeeeeeeeecceeee
Confidence 33444444433221 0001111 1100000000 00000 0 0111 12245556677777799
Q ss_pred EEeCCCeEEEEeC-C-----C-----C-------------eeEeeecCCccEEEEEec--CCEEEEeecCcEEEEEeC
Q 001123 435 TGGANGLLLQWDP-N-----G-----N-------------RLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDL 486 (1149)
Q Consensus 435 Sgs~DgtIrlWD~-t-----G-----~-------------~l~tl~gH~~~V~sls~d--G~~LaSGs~DGtIrlWD~ 486 (1149)
+||.+=.|.+|-+ . | . .+..|+||.+-++-+-++ ..+|++.+-...|+||.-
T Consensus 309 tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 309 TGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred ccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 9999999999976 1 2 1 245688999888888764 568888888899999973
No 207
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=5.8e-09 Score=120.25 Aligned_cols=133 Identities=20% Similarity=0.377 Sum_probs=111.9
Q ss_pred cceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEee-ecCCccEEEEEe----c
Q 001123 396 RNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDF-QYLPFAVQCLCT----F 468 (1149)
Q Consensus 396 ~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl-~gH~~~V~sls~----d 468 (1149)
+++.+++...++|+.-...+.+|.+.|+++.++.||. |+|||.|-.+.|||. .-+.+..+ +||...|.|+.| .
T Consensus 27 rq~y~~~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tn 106 (758)
T KOG1310|consen 27 RQIYMGNSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTN 106 (758)
T ss_pred HHHhccccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCC
Confidence 3445566777778776778999999999999999998 789999999999999 66776655 689999999976 3
Q ss_pred CCEEEEeecCcEEEEEeCC----C-------ceeeeeeccCCCeEEEE--ecC-CeEEeecCCCceeeeeccCC
Q 001123 469 GSQIWVGYMNGIVQVLDLE----G-------NLLGGWVAHSSPVIKMA--VGA-GYIFTLANHGGIRGWNVTSP 528 (1149)
Q Consensus 469 G~~LaSGs~DGtIrlWD~~----G-------~~l~~l~gH~~~V~sLa--~Dg-~~LaSgS~DgtIRlWdl~sp 528 (1149)
.+.+++|..|..|+|+|++ | ..++.|..|+..|..|+ +++ ..++|+|.||+||-.|+..|
T Consensus 107 nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 107 NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence 6899999999999999975 1 24678889999999998 444 78999999999999999764
No 208
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.81 E-value=9e-08 Score=118.25 Aligned_cols=188 Identities=19% Similarity=0.211 Sum_probs=132.0
Q ss_pred CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001123 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (1149)
Q Consensus 142 ~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl 220 (1149)
+.++.. ..++.+-+||...+..... ....... .+ -+..-+.++++.-++++|+.=+.|.+|+.
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~------------i~~~er~-~l---~~~~~~g~s~~~~~i~~gsv~~~iivW~~ 162 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSK------------IQSDERC-TL---YSSLIIGDSAEELYIASGSVFGEIIVWKP 162 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehh------------cCCCceE-EE---EeEEEEeccCcEEEEEeccccccEEEEec
Confidence 445543 5688888999876554322 0000000 00 12223445667778999999999999998
Q ss_pred CCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccc
Q 001123 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRS 299 (1149)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~ 299 (1149)
.... . ...+.||.|.|.++.++-||. ++|.|+|++||+|++++.+..
T Consensus 163 ~~dn-------~-p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~------------------------ 210 (967)
T KOG0974|consen 163 HEDN-------K-PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL------------------------ 210 (967)
T ss_pred cccC-------C-cceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc------------------------
Confidence 7322 1 125799999999999999997 899999999999999764310
Q ss_pred cccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEec
Q 001123 300 HLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTS 379 (1149)
Q Consensus 300 ~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~ 379 (1149)
.+..+++ +.|+|+.
T Consensus 211 ---------------~~~~fgH-----------saRvw~~---------------------------------------- 224 (967)
T KOG0974|consen 211 ---------------GCTGFGH-----------SARVWAC---------------------------------------- 224 (967)
T ss_pred ---------------Ccccccc-----------cceeEEE----------------------------------------
Confidence 0111222 3455552
Q ss_pred CCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCcEEEEeCCCeEEEEeCCCCeeEeeecCC
Q 001123 380 SKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQDFQYLP 459 (1149)
Q Consensus 380 ~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~laSgs~DgtIrlWD~tG~~l~tl~gH~ 459 (1149)
.+.|. .++|++.|-|.++|+.+|..+.++.+|.
T Consensus 225 ----------------------------------------------~~~~n-~i~t~gedctcrvW~~~~~~l~~y~~h~ 257 (967)
T KOG0974|consen 225 ----------------------------------------------CFLPN-RIITVGEDCTCRVWGVNGTQLEVYDEHS 257 (967)
T ss_pred ----------------------------------------------Eeccc-eeEEeccceEEEEEecccceehhhhhhh
Confidence 24444 7899999999999999999999999987
Q ss_pred c-cEEEEEe--cCCEEEEeecCcEEEEEeCCCce
Q 001123 460 F-AVQCLCT--FGSQIWVGYMNGIVQVLDLEGNL 490 (1149)
Q Consensus 460 ~-~V~sls~--dG~~LaSGs~DGtIrlWD~~G~~ 490 (1149)
. .|..+.. ..-.+++|+.||+|++||+.+..
T Consensus 258 g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 258 GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred hcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 5 4777765 34688899999999999976544
No 209
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.79 E-value=1.1e-06 Score=105.68 Aligned_cols=74 Identities=15% Similarity=0.001 Sum_probs=58.2
Q ss_pred CCceEEEEEcCCCCEEEEEeC---CCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-E-EEEECCCc--
Q 001123 191 VSSVMCMVGDEASGVVWSGHR---DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGG-- 263 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~---DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L-~SGS~DgT-- 263 (1149)
...+.+.+|+|||+.|+..+. +..|.+||+.++. ...+..+.+.+.+.+|||||+ | ++.+.|+.
T Consensus 201 ~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~---------~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~ 271 (435)
T PRK05137 201 SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ---------RELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTD 271 (435)
T ss_pred CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc---------EEEeecCCCcccCcEECCCCCEEEEEEecCCCce
Confidence 568999999999999988774 4689999998865 345566778888999999997 5 57777776
Q ss_pred EEEEeCCCcc
Q 001123 264 IKIWPWEAIE 273 (1149)
Q Consensus 264 IRVWdl~t~~ 273 (1149)
|.+||+++++
T Consensus 272 Iy~~d~~~~~ 281 (435)
T PRK05137 272 IYTMDLRSGT 281 (435)
T ss_pred EEEEECCCCc
Confidence 6666776654
No 210
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.79 E-value=5e-08 Score=112.75 Aligned_cols=124 Identities=19% Similarity=0.265 Sum_probs=90.8
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEE-eecCCCCEEEEEEeCCC--c-EEEEECCCcEEE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLS-WQAHRGPVLSLCISSYG--D-LWSGSEGGGIKI 266 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~-l~GH~~~VtsVafSpdG--~-L~SGS~DgTIRV 266 (1149)
++=|+||+|+.+|.+|+|||.|-.+.|||.-..+ .++. =.||++-|.|+.|-|.. + ++||+.|..|||
T Consensus 50 ~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K--------llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 50 TGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK--------LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred cceecceeecCCCCEEeecCCcceEEeecchhcc--------eeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 8899999999999999999999999999986432 2333 26999999999999964 2 689999999999
Q ss_pred EeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCC-CEEEEec-CCceEEEEcCC
Q 001123 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDART 341 (1149)
Q Consensus 267 Wdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~-~~v~Sas-d~tIrLWD~~T 341 (1149)
+|+...+... ..|. .......+..+...|+-++..+++ ..+|+++ |++||-+|++-
T Consensus 122 fdl~~~~~~~-----~d~~--------------~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 122 FDLDSSKEGG-----MDHG--------------MEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred Eecccccccc-----cccC--------------ccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 9997521100 0000 000001112234668888888877 6889887 78999999874
No 211
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=98.78 E-value=4.6e-09 Score=113.16 Aligned_cols=61 Identities=21% Similarity=0.258 Sum_probs=39.6
Q ss_pred ceeeeeeeeeccccCccceeEeeeEeeccc---ccccCcceeEEEEEEeceEEEEeeecccccchh
Q 001123 642 AGLLIAVWVRKNLKDYVGDVDVAAVPCGFG---RAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEA 704 (1149)
Q Consensus 642 ~Gl~l~vfvr~~l~~~i~~v~~~~v~tG~~---g~~gNKGaV~ir~~~~~t~lcFVn~HLaA~~~~ 704 (1149)
.+..++++.|.++...+..........+.. ....+++.+.+++. +..|+++|+|+.+....
T Consensus 72 ~~~g~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~~~H~~~~~~~ 135 (249)
T PF03372_consen 72 GGYGVAILSRSPIFSSVSYVFSLFSKPGIRIFRRSSKSKGIVPVSIN--GKPITVVNVHLPSSNDE 135 (249)
T ss_dssp SSEEEEEEESSCCCEEEEEEEEEESSSTTCEEEEEEEEEEEEEEEEE--TEEEEEEEEETTSHHHH
T ss_pred cCceEEEEEcccccccccccccccccccccccccccccccccccccc--ceEEEeeeccccccchh
Confidence 456788999987654444433222222222 23456777777766 99999999999996544
No 212
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.77 E-value=1.3e-07 Score=116.14 Aligned_cols=99 Identities=20% Similarity=0.374 Sum_probs=78.0
Q ss_pred CCcEEEEeCCCeEEEEeC-CCCeeEeeec-CCccEEEEEec---CCEEEEeecCcEEEEEeCC----CceeeeeeccCCC
Q 001123 430 DGMIWTGGANGLLLQWDP-NGNRLQDFQY-LPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE----GNLLGGWVAHSSP 500 (1149)
Q Consensus 430 Dg~laSgs~DgtIrlWD~-tG~~l~tl~g-H~~~V~sls~d---G~~LaSGs~DGtIrlWD~~----G~~l~~l~gH~~~ 500 (1149)
.|.|++++.-..|||||. .-.+++.+.. -..-|++++.+ |..|++|..||.||++|.. -..+..++.|+++
T Consensus 1177 ~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~ 1256 (1387)
T KOG1517|consen 1177 SGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV 1256 (1387)
T ss_pred CCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCc
Confidence 466777777889999999 4455665543 44568888764 8999999999999999954 2368899999998
Q ss_pred --eEEEEe--cC-CeEEeecCCCceeeeeccCC
Q 001123 501 --VIKMAV--GA-GYIFTLANHGGIRGWNVTSP 528 (1149)
Q Consensus 501 --V~sLa~--Dg-~~LaSgS~DgtIRlWdl~sp 528 (1149)
|..+.. .| ..|+|||.||.|++||+..+
T Consensus 1257 ~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1257 EPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred ccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 988873 33 36999999999999998654
No 213
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.76 E-value=3.3e-06 Score=99.32 Aligned_cols=276 Identities=14% Similarity=0.100 Sum_probs=156.3
Q ss_pred EEEeeCCeEEEeC-CCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeE
Q 001123 137 TIVCTEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRI 215 (1149)
Q Consensus 137 ~l~~~~~~l~ag~-D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtI 215 (1149)
+.+..++.++.+. ++.|.-+|.++|...... . +...+. .+ .+. ++..++.|+.||.+
T Consensus 60 ~p~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~------------~---~~~~~~-~~----p~v--~~~~v~v~~~~g~l 117 (377)
T TIGR03300 60 QPAVAGGKVYAADADGTVVALDAETGKRLWRV------------D---LDERLS-GG----VGA--DGGLVFVGTEKGEV 117 (377)
T ss_pred ceEEECCEEEEECCCCeEEEEEccCCcEeeee------------c---CCCCcc-cc----eEE--cCCEEEEEcCCCEE
Confidence 3445578888764 678999999988876540 0 000011 11 122 46778888999999
Q ss_pred EEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccc
Q 001123 216 MCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (1149)
Q Consensus 216 RvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~ 295 (1149)
..+|.++|.. +.+..- .+.+.+.....++.++.++.|+.|..||.++++.............
T Consensus 118 ~ald~~tG~~--------~W~~~~-~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~--------- 179 (377)
T TIGR03300 118 IALDAEDGKE--------LWRAKL-SSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALT--------- 179 (377)
T ss_pred EEEECCCCcE--------eeeecc-CceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCcee---------
Confidence 9999988751 222111 1233322222345677788899999999988875443321110000
Q ss_pred cccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceee
Q 001123 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375 (1149)
Q Consensus 296 ~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~ 375 (1149)
.. +. ... +.. ++..++...++.+..+|+++|+.+......... ...
T Consensus 180 -~~------~~----~sp---~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~---------g~~--------- 225 (377)
T TIGR03300 180 -LR------GS----ASP---VIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPK---------GRT--------- 225 (377)
T ss_pred -ec------CC----CCC---EEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCC---------CCC---------
Confidence 00 00 000 111 122222333467888899888766543211000 000
Q ss_pred EEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCcEEEEeCCCeEEEEeC-CCCeeEe
Q 001123 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQD 454 (1149)
Q Consensus 376 ~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~laSgs~DgtIrlWD~-tG~~l~t 454 (1149)
. ..+ +.... ... .-.++.++.++.+|.+..||. +|+.+-.
T Consensus 226 ---------~--------------------~~~------~~~~~---~~p-~~~~~~vy~~~~~g~l~a~d~~tG~~~W~ 266 (377)
T TIGR03300 226 ---------E--------------------LER------LVDVD---GDP-VVDGGQVYAVSYQGRVAALDLRSGRVLWK 266 (377)
T ss_pred ---------c--------------------hhh------hhccC---Ccc-EEECCEEEEEEcCCEEEEEECCCCcEEEe
Confidence 0 000 00000 000 012456788888999999999 8887654
Q ss_pred eecCCccEEEEEecCCEEEEeecCcEEEEEeCC-CceeeeeeccCC-CeEEEEecCCeEEeecCCCceeeeeccC
Q 001123 455 FQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSS-PVIKMAVGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 455 l~gH~~~V~sls~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~-~V~sLa~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
... ....+...++.+|+.++.||.|..+|.+ |+.+.....-.+ .+.+....+..|+.++.||.|.+||..+
T Consensus 267 ~~~--~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 267 RDA--SSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSRED 339 (377)
T ss_pred ecc--CCccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCC
Confidence 432 1223445678899999999999999975 877654422111 2233344677999999999999999754
No 214
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=8.7e-08 Score=106.07 Aligned_cols=96 Identities=15% Similarity=0.229 Sum_probs=75.7
Q ss_pred EEEEeCCCeEEEEeC-C-C-CeeEeeecCC-ccEEEEEe--cCCEEEEee----cCcEEEEEeCC--Cceeeee-eccCC
Q 001123 433 IWTGGANGLLLQWDP-N-G-NRLQDFQYLP-FAVQCLCT--FGSQIWVGY----MNGIVQVLDLE--GNLLGGW-VAHSS 499 (1149)
Q Consensus 433 laSgs~DgtIrlWD~-t-G-~~l~tl~gH~-~~V~sls~--dG~~LaSGs----~DGtIrlWD~~--G~~l~~l-~gH~~ 499 (1149)
+.+|+.||+||+||+ . + .....+++|+ .+-.|+.. .++.+++|. .|-.+.+||+. .++++.| ..|.+
T Consensus 87 v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~D 166 (376)
T KOG1188|consen 87 VISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHND 166 (376)
T ss_pred eEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccC
Confidence 789999999999999 3 3 3345566666 35556665 478888886 67789999975 4545444 58999
Q ss_pred CeEEEEe---cCCeEEeecCCCceeeeeccCC
Q 001123 500 PVIKMAV---GAGYIFTLANHGGIRGWNVTSP 528 (1149)
Q Consensus 500 ~V~sLa~---Dg~~LaSgS~DgtIRlWdl~sp 528 (1149)
-|++|.+ ++++|+|||-||-|-++|+..+
T Consensus 167 DVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 167 DVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred cceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 9999984 8899999999999999999776
No 215
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.73 E-value=3.1e-06 Score=101.56 Aligned_cols=207 Identities=12% Similarity=-0.009 Sum_probs=119.5
Q ss_pred CCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEE---CCCcEEEEeCCCcceeeecCCCcceeeE
Q 001123 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS---EGGGIKIWPWEAIEKALSLKPEERHTAA 287 (1149)
Q Consensus 212 DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS---~DgTIRVWdl~t~~~~~~l~~~~~~~~a 287 (1149)
...|.+||.+++. ...+..+.+.+.+.+|||||+ |+..+ .+..|.+|++.+++... +...
T Consensus 178 ~~~l~~~d~dg~~---------~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~------ 241 (429)
T PRK03629 178 PYELRVSDYDGYN---------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASF------ 241 (429)
T ss_pred ceeEEEEcCCCCC---------CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCC------
Confidence 3478889887643 344556778999999999997 65333 34679999997764321 1100
Q ss_pred EEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEe-c-C--CceEEEEcCCccEEEEEecCCceeeEEeeccC
Q 001123 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-G-F--LSFALWDARTRELLKVFNIDGQIENRVDMSLL 363 (1149)
Q Consensus 288 ~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sa-s-d--~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~ 363 (1149)
.++ .....+++++.+|+.. . + ..|.+||+.+|++.+....+
T Consensus 242 ----------~~~-------------~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~------------ 286 (429)
T PRK03629 242 ----------PRH-------------NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR------------ 286 (429)
T ss_pred ----------CCC-------------cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCC------------
Confidence 001 1123456666655432 2 2 24888898876543221100
Q ss_pred CCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEeC-CCe
Q 001123 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGA-NGL 441 (1149)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs~-Dgt 441 (1149)
..+....++|||. |+..+. ++.
T Consensus 287 --------------------------------------------------------~~~~~~~wSPDG~~I~f~s~~~g~ 310 (429)
T PRK03629 287 --------------------------------------------------------SNNTEPTWFPDSQNLAYTSDQAGR 310 (429)
T ss_pred --------------------------------------------------------CCcCceEECCCCCEEEEEeCCCCC
Confidence 0112345788886 655554 344
Q ss_pred EEEE--eCCCCeeEeeecCCccE--EEEEecCCEEEEeecC---cEEEEEeCCCceeeeeec-cCCCeEEEEecCCeEEe
Q 001123 442 LLQW--DPNGNRLQDFQYLPFAV--QCLCTFGSQIWVGYMN---GIVQVLDLEGNLLGGWVA-HSSPVIKMAVGAGYIFT 513 (1149)
Q Consensus 442 IrlW--D~tG~~l~tl~gH~~~V--~sls~dG~~LaSGs~D---GtIrlWD~~G~~l~~l~g-H~~~V~sLa~Dg~~LaS 513 (1149)
..|| |+++...+.+..+.... .++++||++|+..+.+ ..|.+||+++.....+.. +...--+.++||++|+.
T Consensus 311 ~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 311 PQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIY 390 (429)
T ss_pred ceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEE
Confidence 4555 66443344444333333 3456799999876643 468999987433333332 22222345689999999
Q ss_pred ecCCCc---eeeeec
Q 001123 514 LANHGG---IRGWNV 525 (1149)
Q Consensus 514 gS~Dgt---IRlWdl 525 (1149)
++.|+. +.+|++
T Consensus 391 ~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 391 SSSQGMGSVLNLVST 405 (429)
T ss_pred EEcCCCceEEEEEEC
Confidence 988876 445554
No 216
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.73 E-value=1.5e-06 Score=104.12 Aligned_cols=71 Identities=10% Similarity=0.009 Sum_probs=54.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-E-EEEECCCcEE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRD---GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIK 265 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~D---GtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L-~SGS~DgTIR 265 (1149)
...+.+.+|+|||+.|+..+.+ ..|.+||+.++. ...+....+.+.+.+|||||+ | ++.+.|+..+
T Consensus 195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~---------~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~ 265 (427)
T PRK02889 195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR---------RRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQ 265 (427)
T ss_pred CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC---------EEEeecCCCCccceEECCCCCEEEEEEccCCCce
Confidence 4578899999999999887753 359999998865 233444455677899999997 5 4788899888
Q ss_pred EEeCC
Q 001123 266 IWPWE 270 (1149)
Q Consensus 266 VWdl~ 270 (1149)
||.++
T Consensus 266 Iy~~d 270 (427)
T PRK02889 266 IYTVN 270 (427)
T ss_pred EEEEE
Confidence 88764
No 217
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.72 E-value=1.7e-07 Score=101.74 Aligned_cols=111 Identities=14% Similarity=0.209 Sum_probs=78.5
Q ss_pred eEEEeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCce---eeeecCCceEEEEEcC-CCCEEEEEeCCCeEEEEE
Q 001123 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFK---ESVKGVSSVMCMVGDE-ASGVVWSGHRDGRIMCWK 219 (1149)
Q Consensus 144 ~l~ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~---~s~~G~~~V~~lafs~-dg~~LaSGS~DGtIRvWd 219 (1149)
.|.|.++..+|||.+.+-..... ..+.+. .+-+ -.++++..++. |-.+|.+.|-|.|..+||
T Consensus 114 dlLATs~D~LRlWri~~ee~~~~-------------~~~~L~~~kns~~-~aPlTSFDWne~dp~~igtSSiDTTCTiWd 179 (364)
T KOG0290|consen 114 DLLATSSDFLRLWRIGDEESRVE-------------LQSVLNNNKNSEF-CAPLTSFDWNEVDPNLIGTSSIDTTCTIWD 179 (364)
T ss_pred chhhcccCeEEEEeccCcCCcee-------------hhhhhccCccccc-CCcccccccccCCcceeEeecccCeEEEEE
Confidence 56667777899999863221100 000010 0111 35677777764 458999999999999999
Q ss_pred CCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc--EEEEECCCcEEEEeCCCcc
Q 001123 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIE 273 (1149)
Q Consensus 220 l~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~--L~SGS~DgTIRVWdl~t~~ 273 (1149)
+++|. .+....+|.+|...|..|+|...|. ++|.|.||.||++|+...+
T Consensus 180 ie~~~-----~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le 230 (364)
T KOG0290|consen 180 IETGV-----SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE 230 (364)
T ss_pred Eeecc-----ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc
Confidence 99863 1223456899999999999999775 6899999999999997644
No 218
>PRK05421 hypothetical protein; Provisional
Probab=98.71 E-value=2.9e-07 Score=103.29 Aligned_cols=43 Identities=16% Similarity=0.121 Sum_probs=33.7
Q ss_pred CcceeEEEEEE-eceEEEEeeecccccchhHHHHHHHHHHHHHh
Q 001123 676 NKGAVGLRVRV-YDRIMCFVNCHFAAHLEAVNRRNADFDHVYRT 718 (1149)
Q Consensus 676 NKGaV~ir~~~-~~t~lcFVn~HLaA~~~~~~~Rn~d~~~I~~~ 718 (1149)
-||++.+.+.+ .+..+.|+|+||.+.....+.|.+++..|.+.
T Consensus 134 ~r~~l~a~~~~~~g~~l~v~ntHl~~~~~~~~~r~~q~~~l~~~ 177 (263)
T PRK05421 134 PKSALITEYPLPNGRTLLVVNIHAINFSLGVDVYSKQLEPIGDQ 177 (263)
T ss_pred cceeEEEEEEeCCCCEEEEEEECccccCcChHHHHHHHHHHHHH
Confidence 38999999988 55679999999987644456688888777664
No 219
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.70 E-value=2.4e-06 Score=101.49 Aligned_cols=74 Identities=12% Similarity=0.007 Sum_probs=55.7
Q ss_pred CCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-E-EEEECCC--c
Q 001123 191 VSSVMCMVGDEASGVVWSGHRD---GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGG--G 263 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~D---GtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L-~SGS~Dg--T 263 (1149)
...+.+.+|+|||+.|+.++.+ ..|.+||+.++. ...+..+.+.+.+++|+|||+ | ++.+.++ .
T Consensus 189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~---------~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 259 (417)
T TIGR02800 189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ---------REKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPD 259 (417)
T ss_pred CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC---------EEEeecCCCCccceEECCCCCEEEEEECCCCCcc
Confidence 4467888999999999987755 489999998864 334455667788899999997 5 4666555 5
Q ss_pred EEEEeCCCcc
Q 001123 264 IKIWPWEAIE 273 (1149)
Q Consensus 264 IRVWdl~t~~ 273 (1149)
|.+|++.++.
T Consensus 260 i~~~d~~~~~ 269 (417)
T TIGR02800 260 IYVMDLDGKQ 269 (417)
T ss_pred EEEEECCCCC
Confidence 8888887643
No 220
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.69 E-value=4e-07 Score=105.21 Aligned_cols=201 Identities=17% Similarity=0.178 Sum_probs=126.5
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCC
Q 001123 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPE 281 (1149)
Q Consensus 203 g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~ 281 (1149)
+..++-.+.||++.+-+-.+ +.-....+|.++|.+-.++|||. |+|+++||.||+|.-.....+. +.
T Consensus 75 ~d~~~i~s~DGkf~il~k~~---------rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRSt-l~-- 142 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSA---------RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRST-VV-- 142 (737)
T ss_pred cceEEEEcCCceEEEecccc---------hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHH-Hh--
Confidence 34566678899998876543 12345679999999999999998 9999999999999864321110 00
Q ss_pred cceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEE-EecCCceEEEEcCCccEEEEEecCCceeeEEee
Q 001123 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAGFLSFALWDARTRELLKVFNIDGQIENRVDM 360 (1149)
Q Consensus 282 ~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~-Sasd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~ 360 (1149)
+ ....+.|++.+++...+. +.++. +. ++.|.+...+
T Consensus 143 ------------------Q---------~~~~v~c~~W~p~S~~vl~c~g~h-~~---------IKpL~~n~k~------ 179 (737)
T KOG1524|consen 143 ------------------Q---------NEESIRCARWAPNSNSIVFCQGGH-IS---------IKPLAANSKI------ 179 (737)
T ss_pred ------------------h---------cCceeEEEEECCCCCceEEecCCe-EE---------Eeecccccce------
Confidence 0 113466777766544332 32211 11 1112111111
Q ss_pred ccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEeCC
Q 001123 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGAN 439 (1149)
Q Consensus 361 S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs~D 439 (1149)
.+| ..|.+-|-++.+++... |+||++|
T Consensus 180 ----------------------------------------------i~W------kAHDGiiL~~~W~~~s~lI~sgGED 207 (737)
T KOG1524|consen 180 ----------------------------------------------IRW------RAHDGLVLSLSWSTQSNIIASGGED 207 (737)
T ss_pred ----------------------------------------------eEE------eccCcEEEEeecCccccceeecCCc
Confidence 111 12233344566666544 7899999
Q ss_pred CeEEEEeCCCCeeEeeecCCccEEEEEecC-CEEEEeecCcEEEEEeCCCceeeeeeccCCCeEEEE--ecCCeEEeecC
Q 001123 440 GLLLQWDPNGNRLQDFQYLPFAVQCLCTFG-SQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMA--VGAGYIFTLAN 516 (1149)
Q Consensus 440 gtIrlWD~tG~~l~tl~gH~~~V~sls~dG-~~LaSGs~DGtIrlWD~~G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~ 516 (1149)
-..++||.-|..+-+-..|.++|++++++. +..+.||. .+.|+= .-..+.|..++ +||..++.|..
T Consensus 208 ~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~-nt~R~~----------~p~~GSifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 208 FRFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYLLWSY-NTARFS----------SPRVGSIFNLSWSADGTQATCGTS 276 (737)
T ss_pred eeEEeecccCcccccCChhccceeeeeeccccceeeeee-eeeeec----------CCCccceEEEEEcCCCceeecccc
Confidence 999999999999988889999999998854 45555543 355511 12345677776 58888877766
Q ss_pred CCcee
Q 001123 517 HGGIR 521 (1149)
Q Consensus 517 DgtIR 521 (1149)
.|.+-
T Consensus 277 ~G~v~ 281 (737)
T KOG1524|consen 277 TGQLI 281 (737)
T ss_pred CceEE
Confidence 66553
No 221
>PRK11756 exonuclease III; Provisional
Probab=98.68 E-value=1.1e-07 Score=106.72 Aligned_cols=126 Identities=13% Similarity=0.145 Sum_probs=68.2
Q ss_pred EEEEEEeCCCCCCchhhcccccCCCCCcceEEEEeeccccccchhhhhhhhhhccCCCCcchhhHHHHHhcccCCCCcEE
Q 001123 555 LAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFE 634 (1149)
Q Consensus 555 ~v~TWNv~~~~~~~~~l~~wl~~~~~~~Di~viGlQEi~~~~~~~~~~~~ke~~~~~~~~~~~~W~~~i~~~L~~~~~y~ 634 (1149)
.|.||||++.+...+.+.+||.. .+|||++ |||+......+ . .| .+ +.+ ++.+.
T Consensus 2 ri~T~Nv~g~~~~~~~i~~~i~~--~~pDIi~--LQE~~~~~~~~----------------~-~~--~~-~~~--gy~~~ 55 (268)
T PRK11756 2 KFVSFNINGLRARPHQLEAIIEK--HQPDVIG--LQETKVHDEMF----------------P-LE--EV-EAL--GYHVF 55 (268)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHh--cCCCEEE--EEecccccccC----------------C-HH--HH-Hhc--CCEEE
Confidence 57899999765544567888874 4588755 99986432110 0 01 11 122 23222
Q ss_pred EEeeeccceeeeeeeeeccccCccceeEeeeEeeccccc--ccCcceeEEEEEEeceEEEEeeecccccc-----hhHHH
Q 001123 635 RVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRA--IGNKGAVGLRVRVYDRIMCFVNCHFAAHL-----EAVNR 707 (1149)
Q Consensus 635 ~v~s~qL~Gl~l~vfvr~~l~~~i~~v~~~~v~tG~~g~--~gNKGaV~ir~~~~~t~lcFVn~HLaA~~-----~~~~~ 707 (1149)
.-....-.|+ +++.|..+. .+. .++.+. -...+.+.+++...+..+.|+|+|++.+. ++.+.
T Consensus 56 ~~~~~~~~Gv--ailSr~p~~----~~~-----~~~~~~~~~~~~r~l~~~i~~~~g~~~v~n~y~P~~~~~~~~~~~~~ 124 (268)
T PRK11756 56 YHGQKGHYGV--ALLSKQTPI----AVR-----KGFPTDDEEAQRRIIMATIPTPNGNLTVINGYFPQGESRDHPTKFPA 124 (268)
T ss_pred EeCCCCCCEE--EEEECCChH----HeE-----ECCCCccccccCCEEEEEEEcCCCCEEEEEEEecCCCCCCcchhHHH
Confidence 2223333454 456676542 221 122211 12357788888776556999999998653 23334
Q ss_pred HHHHHHHHHH
Q 001123 708 RNADFDHVYR 717 (1149)
Q Consensus 708 Rn~d~~~I~~ 717 (1149)
|.+.+..|..
T Consensus 125 r~~~~~~l~~ 134 (268)
T PRK11756 125 KRQFYQDLQN 134 (268)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 222
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=98.66 E-value=7e-07 Score=101.16 Aligned_cols=47 Identities=13% Similarity=0.255 Sum_probs=38.5
Q ss_pred cccCcceeEEEEEEeceEEEEeeecccccc------hhHHHHHHHHHHHHHhc
Q 001123 673 AIGNKGAVGLRVRVYDRIMCFVNCHFAAHL------EAVNRRNADFDHVYRTM 719 (1149)
Q Consensus 673 ~~gNKGaV~ir~~~~~t~lcFVn~HLaA~~------~~~~~Rn~d~~~I~~~l 719 (1149)
...+||.+.+++.+.+..+.|+|.||.+.. ..-+.|.+++.+|.+.+
T Consensus 117 ~~~~kg~l~a~i~~~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i 169 (283)
T TIGR03395 117 NLSNKGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFI 169 (283)
T ss_pred cccCCceEEEEEecCCeEEEEEEeCCCCCcccccccccHHHHHHHHHHHHHHH
Confidence 346899999999999999999999999753 22467899999887654
No 223
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.63 E-value=9.2e-06 Score=97.70 Aligned_cols=197 Identities=13% Similarity=-0.011 Sum_probs=114.6
Q ss_pred CeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEE---CCCcEEEEeCCCcceeeecCCCcceeeEE
Q 001123 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS---EGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (1149)
Q Consensus 213 GtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS---~DgTIRVWdl~t~~~~~~l~~~~~~~~a~ 288 (1149)
..|.+||.+++. ...+..|.+.|.+.+|||||+ |+..+ .+..|.+||+.+++... +....
T Consensus 182 ~~l~~~d~dg~~---------~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~------ 245 (435)
T PRK05137 182 KRLAIMDQDGAN---------VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNFP------ 245 (435)
T ss_pred eEEEEECCCCCC---------cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCC------
Confidence 478888886643 456778899999999999997 66554 35789999998765321 11000
Q ss_pred EeeeccccccccccccceeeeecCCeEEEEEcCCCCEEE-Eec-C--CceEEEEcCCccEEEEEecCCceeeEEeeccCC
Q 001123 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAG-F--LSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (1149)
Q Consensus 289 ~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~-Sas-d--~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~ 364 (1149)
+.+....+++++.+++ +.+ + ..|.+||+.++++.+ +..+.
T Consensus 246 -----------------------g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~------------ 289 (435)
T PRK05137 246 -----------------------GMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSP------------ 289 (435)
T ss_pred -----------------------CcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE-ccCCC------------
Confidence 1112334556666543 332 2 237777887765422 11000
Q ss_pred CccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEeC-CC--
Q 001123 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGA-NG-- 440 (1149)
Q Consensus 365 ~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs~-Dg-- 440 (1149)
.......++|||. |+..+. +|
T Consensus 290 -------------------------------------------------------~~~~~~~~spDG~~i~f~s~~~g~~ 314 (435)
T PRK05137 290 -------------------------------------------------------AIDTSPSYSPDGSQIVFESDRSGSP 314 (435)
T ss_pred -------------------------------------------------------CccCceeEcCCCCEEEEEECCCCCC
Confidence 0011234778876 554442 33
Q ss_pred eEEEEeCCCCeeEeeecCCccEE--EEEecCCEEEEeecC---cEEEEEeCCCceeeeee-ccCCCeEEEEecCCeEEee
Q 001123 441 LLLQWDPNGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMN---GIVQVLDLEGNLLGGWV-AHSSPVIKMAVGAGYIFTL 514 (1149)
Q Consensus 441 tIrlWD~tG~~l~tl~gH~~~V~--sls~dG~~LaSGs~D---GtIrlWD~~G~~l~~l~-gH~~~V~sLa~Dg~~LaSg 514 (1149)
.|.+||++|...+.+..+...+. .+++||++|+..+.+ ..|.+||+++.....+. ++...-.+.++||++|+-.
T Consensus 315 ~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~ 394 (435)
T PRK05137 315 QLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFF 394 (435)
T ss_pred eEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEE
Confidence 68888886655555554444343 356789999876643 47899998754433332 2221222345799988755
Q ss_pred cC
Q 001123 515 AN 516 (1149)
Q Consensus 515 S~ 516 (1149)
+.
T Consensus 395 ~~ 396 (435)
T PRK05137 395 RQ 396 (435)
T ss_pred Ec
Confidence 44
No 224
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.63 E-value=6.7e-06 Score=92.34 Aligned_cols=153 Identities=15% Similarity=0.195 Sum_probs=108.1
Q ss_pred EEEeeCCeEEEeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEE-e-CCCe
Q 001123 137 TIVCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG-H-RDGR 214 (1149)
Q Consensus 137 ~l~~~~~~l~ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSG-S-~DGt 214 (1149)
++.-..++|...=+..|.|+|+++.+.+.+ .+..| -+ ...+.+++++.++-+||=- + .-|.
T Consensus 92 ~VrmNr~RLvV~Lee~IyIydI~~MklLhT------------I~t~~----~n-~~gl~AlS~n~~n~ylAyp~s~t~Gd 154 (391)
T KOG2110|consen 92 AVRMNRKRLVVCLEESIYIYDIKDMKLLHT------------IETTP----PN-PKGLCALSPNNANCYLAYPGSTTSGD 154 (391)
T ss_pred EEEEccceEEEEEcccEEEEecccceeehh------------hhccC----CC-ccceEeeccCCCCceEEecCCCCCce
Confidence 344447777776555699999998887765 11111 01 2346777777777777633 2 4588
Q ss_pred EEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCc-EEEEeCCCcceeeecCCCcceeeEEEeee
Q 001123 215 IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG-IKIWPWEAIEKALSLKPEERHTAALIVER 292 (1149)
Q Consensus 215 IRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgT-IRVWdl~t~~~~~~l~~~~~~~~a~~~~~ 292 (1149)
|.+||+.+- .....+.+|+++|-+|+|+++|. |||||+-|| |||+.+..+++...+.-....
T Consensus 155 V~l~d~~nl--------~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~-------- 218 (391)
T KOG2110|consen 155 VVLFDTINL--------QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYP-------- 218 (391)
T ss_pred EEEEEcccc--------eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCcee--------
Confidence 999998762 34667889999999999999998 789998886 699999888877665321110
Q ss_pred ccccccccccccceeeeecCCeEEEEEcCCCCEEEEecC-CceEEEEcCC
Q 001123 293 SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDART 341 (1149)
Q Consensus 293 ~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd-~tIrLWD~~T 341 (1149)
..+..++++++...+.+.++ +||.++.+.+
T Consensus 219 -------------------~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 219 -------------------VSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred -------------------eEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 23556788888887766554 7888887764
No 225
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.58 E-value=4.7e-07 Score=100.32 Aligned_cols=36 Identities=31% Similarity=0.518 Sum_probs=25.8
Q ss_pred EEEEEEeCCCCCCchhh-cccccCCCCCcceEEEEeecccc
Q 001123 555 LAGTWNVGQGRASQDAL-ISWLGSAASDVGIVVVGLQEVEM 594 (1149)
Q Consensus 555 ~v~TWNv~~~~~~~~~l-~~wl~~~~~~~Di~viGlQEi~~ 594 (1149)
.+.||||++.......+ .+||.. .+||| |+|||+..
T Consensus 2 ri~t~Nv~g~~~~~~~~~~~~l~~--~~~DI--v~LQE~~~ 38 (255)
T TIGR00633 2 KIISWNVNGLRARLHKLFLDWLKE--EQPDV--LCLQETKV 38 (255)
T ss_pred EEEEEecccHHHHhhccHHHHHHh--cCCCE--EEEEeccC
Confidence 58999999876544555 777764 35665 67899865
No 226
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.57 E-value=4.9e-06 Score=100.01 Aligned_cols=205 Identities=13% Similarity=0.051 Sum_probs=115.7
Q ss_pred CCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEEC---CCcEEEEeCCCcceeeecCCCcceeeE
Q 001123 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSE---GGGIKIWPWEAIEKALSLKPEERHTAA 287 (1149)
Q Consensus 212 DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~---DgTIRVWdl~t~~~~~~l~~~~~~~~a 287 (1149)
..+|.+||..++. ...+..|.+.|.+.+|+|||+ |+..+. +..|.+||+.+++... +....
T Consensus 183 ~~~l~i~D~~g~~---------~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~----- 247 (433)
T PRK04922 183 RYALQVADSDGYN---------PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFR----- 247 (433)
T ss_pred eEEEEEECCCCCC---------ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCC-----
Confidence 3468999987533 455677888999999999997 776653 3479999997765321 11100
Q ss_pred EEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEE-Eec-C--CceEEEEcCCccEEEEEecCCceeeEEeeccC
Q 001123 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAG-F--LSFALWDARTRELLKVFNIDGQIENRVDMSLL 363 (1149)
Q Consensus 288 ~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~-Sas-d--~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~ 363 (1149)
+......+++++.+++ +.+ + ..|.+||+.+|++.. +..+.
T Consensus 248 ------------------------g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~----------- 291 (433)
T PRK04922 248 ------------------------GINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHF----------- 291 (433)
T ss_pred ------------------------CCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-CccCC-----------
Confidence 0111234555665443 222 2 358889988775422 11000
Q ss_pred CCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEe-CCCe
Q 001123 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG-ANGL 441 (1149)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs-~Dgt 441 (1149)
.......++|||. |+.++ .+|.
T Consensus 292 --------------------------------------------------------~~~~~~~~spDG~~l~f~sd~~g~ 315 (433)
T PRK04922 292 --------------------------------------------------------GIDTEPTWAPDGKSIYFTSDRGGR 315 (433)
T ss_pred --------------------------------------------------------CCccceEECCCCCEEEEEECCCCC
Confidence 0011234778876 55444 3444
Q ss_pred --EEEEeCC-CCeeEeeecCCccE--EEEEecCCEEEEeecCc---EEEEEeCCCceeeeeeccCCCeE--EEEecCCeE
Q 001123 442 --LLQWDPN-GNRLQDFQYLPFAV--QCLCTFGSQIWVGYMNG---IVQVLDLEGNLLGGWVAHSSPVI--KMAVGAGYI 511 (1149)
Q Consensus 442 --IrlWD~t-G~~l~tl~gH~~~V--~sls~dG~~LaSGs~DG---tIrlWD~~G~~l~~l~gH~~~V~--sLa~Dg~~L 511 (1149)
|.++|+. |+. +.+..+.... .++++||++|+..+.++ .|.+||+.+.....+. |..... +.++||++|
T Consensus 316 ~~iy~~dl~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt-~~~~~~~p~~spdG~~i 393 (433)
T PRK04922 316 PQIYRVAASGGSA-ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT-PGSLDESPSFAPNGSMV 393 (433)
T ss_pred ceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECC-CCCCCCCceECCCCCEE
Confidence 6666774 443 3333222222 35567899998765443 6999998643333443 222233 345799988
Q ss_pred EeecCC-C--ceeeeec
Q 001123 512 FTLANH-G--GIRGWNV 525 (1149)
Q Consensus 512 aSgS~D-g--tIRlWdl 525 (1149)
+..+.+ + .+.+|++
T Consensus 394 ~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 394 LYATREGGRGVLAAVST 410 (433)
T ss_pred EEEEecCCceEEEEEEC
Confidence 766553 2 3555554
No 227
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.55 E-value=1.1e-05 Score=90.58 Aligned_cols=89 Identities=11% Similarity=0.191 Sum_probs=75.7
Q ss_pred CCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcE-EEEEeCC-CceeeeeeccC--CCeEEEE--ecCC
Q 001123 439 NGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGI-VQVLDLE-GNLLGGWVAHS--SPVIKMA--VGAG 509 (1149)
Q Consensus 439 DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGt-IrlWD~~-G~~l~~l~gH~--~~V~sLa--~Dg~ 509 (1149)
.|.|.|||+ +=+.+.++..|.+++.++++ +|.+||+||..|| |||+.+. |+.+..|+--. ..|++|+ +|++
T Consensus 152 ~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~ 231 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ 231 (391)
T ss_pred CceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC
Confidence 588999999 67889999999999999976 6999999999886 6999975 88888777433 3567787 4899
Q ss_pred eEEeecCCCceeeeeccC
Q 001123 510 YIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 510 ~LaSgS~DgtIRlWdl~s 527 (1149)
+|+..|.-+||.++.++.
T Consensus 232 ~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 232 FLAASSNTETVHIFKLEK 249 (391)
T ss_pred eEEEecCCCeEEEEEecc
Confidence 999999999999998753
No 228
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.54 E-value=2.8e-06 Score=100.19 Aligned_cols=105 Identities=20% Similarity=0.285 Sum_probs=83.2
Q ss_pred ceEEEEEcCC-CcEEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEE--EecCCEEEEeecCcEEEEEeCC-Cceeeeee
Q 001123 421 RTEALTTSID-GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (1149)
Q Consensus 421 ~V~ava~s~D-g~laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sl--s~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~ 495 (1149)
.|.++..+.+ +.|.|++.|+.+..|+. +++.++.+.+.+..+.++ ++||++|++|| +.|++||++ ++.+..|.
T Consensus 104 ~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ft 181 (541)
T KOG4547|consen 104 NVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFT 181 (541)
T ss_pred cceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEec
Confidence 3444443333 45889999999999999 788899999888878766 45889999875 679999987 78999999
Q ss_pred ccCCCeEEEEe--c-----CCeEE-eecCCCceeeeeccC
Q 001123 496 AHSSPVIKMAV--G-----AGYIF-TLANHGGIRGWNVTS 527 (1149)
Q Consensus 496 gH~~~V~sLa~--D-----g~~La-SgS~DgtIRlWdl~s 527 (1149)
||.++|.++++ + |.+++ ++..+..|-+|-+..
T Consensus 182 gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 182 GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99999999983 3 55655 556778889998654
No 229
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.51 E-value=2.6e-07 Score=105.62 Aligned_cols=222 Identities=15% Similarity=0.180 Sum_probs=149.7
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcce
Q 001123 195 MCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEK 274 (1149)
Q Consensus 195 ~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~~ 274 (1149)
+.+.++.+|+.|+-|++-|.+-..|..++.+ ...+ -=...|.++.|-.+-++++...-.-+.|+|-...+
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L--------~~Ei-~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtE- 202 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL--------HFEI-NVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTE- 202 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeeccccee--------eeee-ehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcE-
Confidence 4588899999999999999999999988652 1211 12568999999887777777788889999965432
Q ss_pred eeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCC-ceEEEEcCCccEEEEEecCCc
Q 001123 275 ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL-SFALWDARTRELLKVFNIDGQ 353 (1149)
Q Consensus 275 ~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~-tIrLWD~~TG~~L~~l~~~g~ 353 (1149)
..++.. + ..+..+-+-+-.-++++++.. -++.-|+.+|+++..+....
T Consensus 203 lHClk~-------------------~-----------~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~- 251 (545)
T KOG1272|consen 203 LHCLKR-------------------H-----------IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA- 251 (545)
T ss_pred Eeehhh-------------------c-----------CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC-
Confidence 222211 1 112222222333445555543 36777888887654432100
Q ss_pred eeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCC-c
Q 001123 354 IENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-M 432 (1149)
Q Consensus 354 ~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg-~ 432 (1149)
+++..+..+|-+ .
T Consensus 252 ------------------------------------------------------------------G~~~vm~qNP~NaV 265 (545)
T KOG1272|consen 252 ------------------------------------------------------------------GRTDVMKQNPYNAV 265 (545)
T ss_pred ------------------------------------------------------------------CccchhhcCCccce
Confidence 111112223332 3
Q ss_pred EEEEeCCCeEEEEeCC-CCeeEeeecCCccEEEEEec--CCEEEEeecCcEEEEEeCCC-ceeeeeeccCCCeEEEEecC
Q 001123 433 IWTGGANGLLLQWDPN-GNRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLEG-NLLGGWVAHSSPVIKMAVGA 508 (1149)
Q Consensus 433 laSgs~DgtIrlWD~t-G~~l~tl~gH~~~V~sls~d--G~~LaSGs~DGtIrlWD~~G-~~l~~l~gH~~~V~sLa~Dg 508 (1149)
+-.|..+|+|-+|+.+ -+.+..+.+|.++|.+|+++ |.|+|+.+.|..++|||+.. ..+.+... .-+...+++..
T Consensus 266 ih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sq 344 (545)
T KOG1272|consen 266 IHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQ 344 (545)
T ss_pred EEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccc
Confidence 5589999999999995 57888888999999999884 99999999999999999863 33343333 23456677766
Q ss_pred CeEEeecCCCceeeee
Q 001123 509 GYIFTLANHGGIRGWN 524 (1149)
Q Consensus 509 ~~LaSgS~DgtIRlWd 524 (1149)
+.++.+|.-..|.+|.
T Consensus 345 kglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 345 KGLLALSYGDHVQIWK 360 (545)
T ss_pred ccceeeecCCeeeeeh
Confidence 6677777777899995
No 230
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.50 E-value=2.2e-07 Score=107.69 Aligned_cols=87 Identities=23% Similarity=0.249 Sum_probs=75.6
Q ss_pred ceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEE--ecCCEEEEeecCcEEEEEeCC-Cceeeeee
Q 001123 421 RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (1149)
Q Consensus 421 ~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls--~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~ 495 (1149)
.|..++|++||+ ||+.|.||.+||+|. +-+++..++..-+...|++ +||+||++|+.|-.|.||..+ ++++..-.
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq 371 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ 371 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc
Confidence 567788999998 899999999999999 5566666666666788885 589999999999999999965 88999999
Q ss_pred ccCCCeEEEEec
Q 001123 496 AHSSPVIKMAVG 507 (1149)
Q Consensus 496 gH~~~V~sLa~D 507 (1149)
||.+||..|++|
T Consensus 372 GHkSWVs~VaFD 383 (636)
T KOG2394|consen 372 GHKSWVSVVAFD 383 (636)
T ss_pred ccccceeeEeec
Confidence 999999999988
No 231
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.50 E-value=4.2e-05 Score=90.02 Aligned_cols=267 Identities=13% Similarity=0.162 Sum_probs=152.6
Q ss_pred EEEeeCCeEEEe-CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeE
Q 001123 137 TIVCTEEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRI 215 (1149)
Q Consensus 137 ~l~~~~~~l~ag-~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtI 215 (1149)
+.+..++.++.+ .|+.|..+|.++|..... .. +..... ..++ + .+..++.++.||.|
T Consensus 100 ~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~------------~~---~~~~~~-~~p~----v--~~~~v~v~~~~g~l 157 (377)
T TIGR03300 100 GVGADGGLVFVGTEKGEVIALDAEDGKELWR------------AK---LSSEVL-SPPL----V--ANGLVVVRTNDGRL 157 (377)
T ss_pred ceEEcCCEEEEEcCCCEEEEEECCCCcEeee------------ec---cCceee-cCCE----E--ECCEEEEECCCCeE
Confidence 445567788775 578899999988886653 00 000000 1111 1 23466677889999
Q ss_pred EEEECCCCCCCCCCCccceEEeecCCCCE-----EEEEEeCCCcEEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEe
Q 001123 216 MCWKMNARLLDSDDGFGEVLSWQAHRGPV-----LSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (1149)
Q Consensus 216 RvWdl~~g~~~~~~~~~~~~~l~GH~~~V-----tsVafSpdG~L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~ 290 (1149)
..||..+|.. +.++......+ .+.++. ++.++.++.++.+..+|+++++...........
T Consensus 158 ~a~d~~tG~~--------~W~~~~~~~~~~~~~~~sp~~~-~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~------ 222 (377)
T TIGR03300 158 TALDAATGER--------LWTYSRVTPALTLRGSASPVIA-DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPK------ 222 (377)
T ss_pred EEEEcCCCce--------eeEEccCCCceeecCCCCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeeccccCC------
Confidence 9999988752 33322211111 111222 356788888999999999887643321100000
Q ss_pred eeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccc
Q 001123 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMED 370 (1149)
Q Consensus 291 ~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~ 370 (1149)
+.............. .. .++..+++..++.+..||+++|+.+....... .
T Consensus 223 --------g~~~~~~~~~~~~~p----~~-~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-~---------------- 272 (377)
T TIGR03300 223 --------GRTELERLVDVDGDP----VV-DGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-Y---------------- 272 (377)
T ss_pred --------CCCchhhhhccCCcc----EE-ECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-c----------------
Confidence 000000000000000 01 12223334446789999999887655432000 0
Q ss_pred cceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCcEEEEeCCCeEEEEeC-CC
Q 001123 371 EFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NG 449 (1149)
Q Consensus 371 ~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~laSgs~DgtIrlWD~-tG 449 (1149)
... .-.++.++.++.||.|..+|. +|
T Consensus 273 ----------------------------------------------------~~p-~~~~~~vyv~~~~G~l~~~d~~tG 299 (377)
T TIGR03300 273 ----------------------------------------------------QGP-AVDDNRLYVTDADGVVVALDRRSG 299 (377)
T ss_pred ----------------------------------------------------cCc-eEeCCEEEEECCCCeEEEEECCCC
Confidence 000 012456777888999999999 78
Q ss_pred CeeEeeecCCc-cEEEEEecCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEE-EEecCCeEEeecCCCceeee
Q 001123 450 NRLQDFQYLPF-AVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK-MAVGAGYIFTLANHGGIRGW 523 (1149)
Q Consensus 450 ~~l~tl~gH~~-~V~sls~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~s-La~Dg~~LaSgS~DgtIRlW 523 (1149)
+.+-....-.. ...+....|.+|++++.+|.|++||.+ |+.+..+..|...+.+ .+.-++.|+.++.||.|..+
T Consensus 300 ~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 300 SELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred cEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 77654422111 223334568899999999999999975 9999888877765543 34444568889999988654
No 232
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.49 E-value=7.7e-06 Score=99.59 Aligned_cols=238 Identities=17% Similarity=0.167 Sum_probs=136.6
Q ss_pred CCeEEEeC-CCCEEEEeCCCCCCC-CccccccccCCCCCCCCCCceeeeecCCceEEEEEcCC--CCEEEEEeCCCeEEE
Q 001123 142 EEQLWAGG-ENGLRVWNLKELYDE-SESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA--SGVVWSGHRDGRIMC 217 (1149)
Q Consensus 142 ~~~l~ag~-D~tVrvWd~~~g~~~-~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~d--g~~LaSGS~DGtIRv 217 (1149)
...+.+|. +|.|-+||+..+... .. ++ .+...-| ..+|..+.+-.+ +.-++|+|.||.|..
T Consensus 255 p~ll~gG~y~GqV~lWD~~~~~~~~~s----~l----------s~~~~sh-~~~v~~vvW~~~~~~~~f~s~ssDG~i~~ 319 (555)
T KOG1587|consen 255 PNLLAGGCYNGQVVLWDLRKGSDTPPS----GL----------SALEVSH-SEPVTAVVWLQNEHNTEFFSLSSDGSICS 319 (555)
T ss_pred cceEEeeccCceEEEEEccCCCCCCCc----cc----------ccccccC-CcCeEEEEEeccCCCCceEEEecCCcEee
Confidence 44444453 888999998866542 11 00 1111123 677888877654 355999999999999
Q ss_pred EECCCCCCCCCCCccceEEe-----ecC-CCCEEEEEEeCCC--cEEEEECCCcEEE---EeCCCcceeeecCCCcceee
Q 001123 218 WKMNARLLDSDDGFGEVLSW-----QAH-RGPVLSLCISSYG--DLWSGSEGGGIKI---WPWEAIEKALSLKPEERHTA 286 (1149)
Q Consensus 218 Wdl~~g~~~~~~~~~~~~~l-----~GH-~~~VtsVafSpdG--~L~SGS~DgTIRV---Wdl~t~~~~~~l~~~~~~~~ 286 (1149)
|+++.-.+ .....+.-.. +.+ ...++++.|.+.. .++-|+++|.|-. ++...... ..+.++..+.
T Consensus 320 W~~~~l~~--P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~-~~~~~~~~~~- 395 (555)
T KOG1587|consen 320 WDTDMLSL--PVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE-VSYKGHSTFI- 395 (555)
T ss_pred eecccccc--chhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc-cccccccccc-
Confidence 98753211 0000000000 112 3578999998854 3789999998866 22222110 1111111110
Q ss_pred EEEeeeccccccccccccceeeeecCCeEEEEEcCCCC-EEEEecCCceEEEEcCC-ccEEEEEecCCceeeEEeeccCC
Q 001123 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAGFLSFALWDART-RELLKVFNIDGQIENRVDMSLLP 364 (1149)
Q Consensus 287 a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~-~v~Sasd~tIrLWD~~T-G~~L~~l~~~g~~~~~v~~S~~~ 364 (1149)
.+.+.+.++..++=.. .+.+++|-++|||.-.. -..+-
T Consensus 396 ----------------------~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~------------------ 435 (555)
T KOG1587|consen 396 ----------------------THIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLL------------------ 435 (555)
T ss_pred ----------------------ccCcceEeeecCCCccceeeeeccceeEeccccCCCCcch------------------
Confidence 1123444444444333 34466678999998531 00000
Q ss_pred CccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCC--cEEEEeCCCeE
Q 001123 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG--MIWTGGANGLL 442 (1149)
Q Consensus 365 ~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg--~laSgs~DgtI 442 (1149)
.+..+...+.++++||-. .++++..||.|
T Consensus 436 -------------------------------------------------~~~~~~~~v~~vaWSptrpavF~~~d~~G~l 466 (555)
T KOG1587|consen 436 -------------------------------------------------SLDSSPDYVTDVAWSPTRPAVFATVDGDGNL 466 (555)
T ss_pred -------------------------------------------------hhhhccceeeeeEEcCcCceEEEEEcCCCce
Confidence 012223346677888864 36789999999
Q ss_pred EEEeC-C--CCeeEeeecCCccEEEEE--ecCCEEEEeecCcEEEEEeCC
Q 001123 443 LQWDP-N--GNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 443 rlWD~-t--G~~l~tl~gH~~~V~sls--~dG~~LaSGs~DGtIrlWD~~ 487 (1149)
-+||+ . -..+.+..-+....+.+. ..|+.|++|+.-|+|.+|++.
T Consensus 467 ~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 467 DIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred ehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 99999 3 244455444433333443 359999999999999999985
No 233
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.48 E-value=3.1e-05 Score=92.87 Aligned_cols=74 Identities=12% Similarity=-0.002 Sum_probs=52.7
Q ss_pred CCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EE-EEECCC--c
Q 001123 191 VSSVMCMVGDEASGVVWSGHRD---GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGG--G 263 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~D---GtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~-SGS~Dg--T 263 (1149)
...+...+|+|||+.|+..+.+ ..|.+|++.++. ...+....+.+.+.+|||||+ |+ +.+.++ .
T Consensus 198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~---------~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~ 268 (430)
T PRK00178 198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR---------REQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPE 268 (430)
T ss_pred CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC---------EEEccCCCCCcCCeEECCCCCEEEEEEccCCCce
Confidence 4578889999999998876644 368889998865 223333344566789999997 54 666666 5
Q ss_pred EEEEeCCCcc
Q 001123 264 IKIWPWEAIE 273 (1149)
Q Consensus 264 IRVWdl~t~~ 273 (1149)
|.+||+++++
T Consensus 269 Iy~~d~~~~~ 278 (430)
T PRK00178 269 IYVMDLASRQ 278 (430)
T ss_pred EEEEECCCCC
Confidence 7777887654
No 234
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.46 E-value=9.4e-05 Score=87.07 Aligned_cols=303 Identities=12% Similarity=0.062 Sum_probs=143.7
Q ss_pred eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCC
Q 001123 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLD 226 (1149)
Q Consensus 148 g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~ 226 (1149)
..++.|.|.|.++.+.... +.. ...-..++|++||++++..++||.|-++|+.+++
T Consensus 13 ~~~~~v~viD~~t~~~~~~---------------------i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~-- 69 (369)
T PF02239_consen 13 RGSGSVAVIDGATNKVVAR---------------------IPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK-- 69 (369)
T ss_dssp GGGTEEEEEETTT-SEEEE---------------------EE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS--
T ss_pred cCCCEEEEEECCCCeEEEE---------------------EcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc--
Confidence 4578899999887665443 221 2222447799999999999999999999999865
Q ss_pred CCCCccceEEeecCCCCEEEEEEeCCCc-EE-EEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeecccccccccccc
Q 001123 227 SDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (1149)
Q Consensus 227 ~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~-SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~ 304 (1149)
.+.+.+.-.+ -.++++|+||+ ++ +.-.++++.++|.++.+....+....... +.
T Consensus 70 ------~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~----------~~------- 125 (369)
T PF02239_consen 70 ------VVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV----------DG------- 125 (369)
T ss_dssp ------EEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T----------TT-------
T ss_pred ------EEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccc----------cc-------
Confidence 3555554433 46799999998 44 56689999999998876554332110000 00
Q ss_pred ceeeeecCCeEEEEEcCCCC-EEEEecC-CceEEEEcCCccEEE--EEecCCceeeEEeeccCCCcccc---ccceeeEE
Q 001123 305 GFSSILTSDIKNLLSDHSRA-KVWSAGF-LSFALWDARTRELLK--VFNIDGQIENRVDMSLLPDFAME---DEFKTKIV 377 (1149)
Q Consensus 305 g~~~~~~~dv~~las~~~~~-~v~Sasd-~tIrLWD~~TG~~L~--~l~~~g~~~~~v~~S~~~~~~~~---~~~~~~~~ 377 (1149)
..+.+..+..++... .+++.-+ +.|-+-|......+. .+...... .-..+++.....+- ..-++-++
T Consensus 126 -----~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~-~D~~~dpdgry~~va~~~sn~i~vi 199 (369)
T PF02239_consen 126 -----PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFP-HDGGFDPDGRYFLVAANGSNKIAVI 199 (369)
T ss_dssp -----S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTE-EEEEE-TTSSEEEEEEGGGTEEEEE
T ss_pred -----cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccc-cccccCcccceeeecccccceeEEE
Confidence 112233333334333 3333332 233333544433221 22211111 11122222221110 00000001
Q ss_pred ecCCCCccceeeeeeccccceEeecCCcEEE-EeecccccCCCCceEEEE---------EcCCCc-EEEEeCCCeEEEEe
Q 001123 378 TSSKKDKAQSSFGFFQRSRNAIMGAADAVRR-VAAKGGFGDDNRRTEALT---------TSIDGM-IWTGGANGLLLQWD 446 (1149)
Q Consensus 378 s~~~k~~~~~si~f~~~~~~~i~G~~d~v~r-v~~~g~~~~~~~~V~ava---------~s~Dg~-laSgs~DgtIrlWD 446 (1149)
.. ..+... ....+ -..|..+...+- ....+. .++.-....+.+||
T Consensus 200 D~-----------------------~~~k~v~~i~~g-~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d 255 (369)
T PF02239_consen 200 DT-----------------------KTGKLVALIDTG-KKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHD 255 (369)
T ss_dssp ET-----------------------TTTEEEEEEE-S-SSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-ST
T ss_pred ee-----------------------ccceEEEEeecc-ccccccccccccCCCcceEEeeccccceecccccCCccccch
Confidence 00 000000 00000 001111111111 111122 22222334566788
Q ss_pred C-CCCeeEeeecCCccEE-EEEecCCEEEEe----ecCcEEEEEeCC-CceeeeeeccCC-CeEEEE--ecCCeEEeecC
Q 001123 447 P-NGNRLQDFQYLPFAVQ-CLCTFGSQIWVG----YMNGIVQVLDLE-GNLLGGWVAHSS-PVIKMA--VGAGYIFTLAN 516 (1149)
Q Consensus 447 ~-tG~~l~tl~gH~~~V~-sls~dG~~LaSG----s~DGtIrlWD~~-G~~l~~l~gH~~-~V~sLa--~Dg~~LaSgS~ 516 (1149)
. +.+.++++......+. ...+++++|++. ...++|.|+|.+ -+.+..+....+ .+..+. .||++++-...
T Consensus 256 ~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~ 335 (369)
T PF02239_consen 256 DYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVW 335 (369)
T ss_dssp TTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE
T ss_pred hhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEe
Confidence 8 6789999887666644 225789999998 456899999976 455555543332 477776 59998775544
Q ss_pred C--CceeeeeccC
Q 001123 517 H--GGIRGWNVTS 527 (1149)
Q Consensus 517 D--gtIRlWdl~s 527 (1149)
| +.|.++|..+
T Consensus 336 ~~~~~i~v~D~~T 348 (369)
T PF02239_consen 336 DGNGAIVVYDAKT 348 (369)
T ss_dssp --TTEEEEEETTT
T ss_pred cCCCEEEEEECCC
Confidence 3 3699999654
No 235
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.45 E-value=4.7e-07 Score=105.03 Aligned_cols=150 Identities=11% Similarity=0.203 Sum_probs=97.7
Q ss_pred eeEEEEEeeCCeEEEe-CCCCEEEEeCCCCCCCCccccc----c----ccCCCCCCCCCCceeeee-cCCceEEEEEcCC
Q 001123 133 CFLRTIVCTEEQLWAG-GENGLRVWNLKELYDESESDSV----S----VSKSKGEDGTAPFKESVK-GVSSVMCMVGDEA 202 (1149)
Q Consensus 133 ~~l~~l~~~~~~l~ag-~D~tVrvWd~~~g~~~~~~~~~----~----~~~~~~d~~~~~~~~s~~-G~~~V~~lafs~d 202 (1149)
-|++-+.+.+.++.+. .+|.+.++|.+-......+-+. + ++....-....|... .+ |.++|+..+|++|
T Consensus 223 T~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~-w~~~~g~in~f~FS~D 301 (636)
T KOG2394|consen 223 TCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVAR-WHIGEGSINEFAFSPD 301 (636)
T ss_pred EEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccce-eEeccccccceeEcCC
Confidence 3555566666666654 5888999886421111000000 0 000000011122211 11 3668899999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCC
Q 001123 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPE 281 (1149)
Q Consensus 203 g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~ 281 (1149)
|++||+-|+||.+||+|..+-. .+..++..-+...||+|||||+ |++|++|..|-||.+.........+++
T Consensus 302 G~~LA~VSqDGfLRvF~fdt~e--------Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGH 373 (636)
T KOG2394|consen 302 GKYLATVSQDGFLRIFDFDTQE--------LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGH 373 (636)
T ss_pred CceEEEEecCceEEEeeccHHH--------HHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccc
Confidence 9999999999999999998732 1223344568999999999999 789999999999999876666666677
Q ss_pred cceeeEEEee
Q 001123 282 ERHTAALIVE 291 (1149)
Q Consensus 282 ~~~~~a~~~~ 291 (1149)
..++..++.+
T Consensus 374 kSWVs~VaFD 383 (636)
T KOG2394|consen 374 KSWVSVVAFD 383 (636)
T ss_pred ccceeeEeec
Confidence 6676666554
No 236
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.45 E-value=1.4e-05 Score=88.31 Aligned_cols=99 Identities=13% Similarity=0.091 Sum_probs=67.3
Q ss_pred ceEEEEEcCCCcEEEEeCC---CeEEEEeCCCCeeEeeecCCccEEEEEec-C-CEEEEeecCcEEEEEeCCCceeeeee
Q 001123 421 RTEALTTSIDGMIWTGGAN---GLLLQWDPNGNRLQDFQYLPFAVQCLCTF-G-SQIWVGYMNGIVQVLDLEGNLLGGWV 495 (1149)
Q Consensus 421 ~V~ava~s~Dg~laSgs~D---gtIrlWD~tG~~l~tl~gH~~~V~sls~d-G-~~LaSGs~DGtIrlWD~~G~~l~~l~ 495 (1149)
.+.-++|++|.+.++.-.| ..+.+||+....+.+.--...+|.++..| | .+|+.......+++|...|-..-.-.
T Consensus 320 g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP 399 (447)
T KOG4497|consen 320 GAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP 399 (447)
T ss_pred ccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC
Confidence 4556899999885544444 57999999655555444456788888876 3 57777766777999998874322222
Q ss_pred ccCCCeEEEE--ecCCeEEeecCCCc
Q 001123 496 AHSSPVIKMA--VGAGYIFTLANHGG 519 (1149)
Q Consensus 496 gH~~~V~sLa--~Dg~~LaSgS~Dgt 519 (1149)
+..-.|.++. .+|..++-.+.|..
T Consensus 400 ~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 400 KKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred CCCceeeeEEecCCCcEEEEEcCCce
Confidence 2224577776 38888888888864
No 237
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.44 E-value=4e-06 Score=89.80 Aligned_cols=115 Identities=14% Similarity=0.190 Sum_probs=82.2
Q ss_pred CCceEEEEEcCCCCEE--EEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEEC---CCcE
Q 001123 191 VSSVMCMVGDEASGVV--WSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSE---GGGI 264 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~L--aSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~---DgTI 264 (1149)
.++|.+++|+|+|..+ ++|..+..|.+||+.. ..+.++ +...++.|.|||+|+ |+.|+. .|.|
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~---------~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l 127 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG---------KKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDL 127 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCcc---------cEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEE
Confidence 4579999999999875 4566889999999974 235555 357889999999998 666654 4679
Q ss_pred EEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-------CCceEEE
Q 001123 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-------FLSFALW 337 (1149)
Q Consensus 265 RVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-------d~tIrLW 337 (1149)
.+||+++.+...... ...+..+.++++|..++++. |..++||
T Consensus 128 ~~wd~~~~~~i~~~~-------------------------------~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw 176 (194)
T PF08662_consen 128 EFWDVRKKKKISTFE-------------------------------HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIW 176 (194)
T ss_pred EEEECCCCEEeeccc-------------------------------cCcEEEEEEcCCCCEEEEEEeccceeccccEEEE
Confidence 999998654432211 12345567778887776653 5679999
Q ss_pred EcCCccEEEEE
Q 001123 338 DARTRELLKVF 348 (1149)
Q Consensus 338 D~~TG~~L~~l 348 (1149)
+. +|+++...
T Consensus 177 ~~-~G~~l~~~ 186 (194)
T PF08662_consen 177 SF-QGRLLYKK 186 (194)
T ss_pred Ee-cCeEeEec
Confidence 97 47766543
No 238
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.43 E-value=3.1e-05 Score=93.58 Aligned_cols=74 Identities=12% Similarity=-0.014 Sum_probs=50.2
Q ss_pred CCceEEEEEcCCCCEEEEEeCC-C--eEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-E-EEEECCCc--
Q 001123 191 VSSVMCMVGDEASGVVWSGHRD-G--RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGG-- 263 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~D-G--tIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L-~SGS~DgT-- 263 (1149)
...+.+.+|||||+.|+-.+.+ + .|.+||+.++. ...+..-.+...+.+|||||+ | ++.+.++.
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~---------~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~ 287 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV---------REKVTSFPGINGAPRFSPDGKKLALVLSKDGQPE 287 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC---------eEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeE
Confidence 4577889999999988876543 3 58888988765 222222233445789999998 6 46777786
Q ss_pred EEEEeCCCcc
Q 001123 264 IKIWPWEAIE 273 (1149)
Q Consensus 264 IRVWdl~t~~ 273 (1149)
|.+||+++++
T Consensus 288 Iy~~dl~tg~ 297 (448)
T PRK04792 288 IYVVDIATKA 297 (448)
T ss_pred EEEEECCCCC
Confidence 6666776543
No 239
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.43 E-value=5e-05 Score=90.27 Aligned_cols=98 Identities=18% Similarity=0.141 Sum_probs=58.1
Q ss_pred EEcCCCc-EEEEeC-CC--eEEEEeCCCCeeEeeecCCccEE--EEEecCCEEEEeecCc---EEEEEeCCCceeeeeec
Q 001123 426 TTSIDGM-IWTGGA-NG--LLLQWDPNGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMNG---IVQVLDLEGNLLGGWVA 496 (1149)
Q Consensus 426 a~s~Dg~-laSgs~-Dg--tIrlWD~tG~~l~tl~gH~~~V~--sls~dG~~LaSGs~DG---tIrlWD~~G~~l~~l~g 496 (1149)
.+++||. |+..+. ++ .|.+||+.+...+.+..+...+. .++++|++|+.++.++ .|.+||+.+.....+..
T Consensus 284 ~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 284 SWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC
Confidence 3567765 544443 33 57788885433445544444444 3456899999988876 89999987543333332
Q ss_pred cCCCe-EEEEecCCeEEeecCCCceeee
Q 001123 497 HSSPV-IKMAVGAGYIFTLANHGGIRGW 523 (1149)
Q Consensus 497 H~~~V-~sLa~Dg~~LaSgS~DgtIRlW 523 (1149)
+.... .+.++||++|+.++.++....+
T Consensus 364 ~~~~~~p~~spdg~~l~~~~~~~~~~~l 391 (417)
T TIGR02800 364 TGLDESPSFAPNGRMILYATTRGGRGVL 391 (417)
T ss_pred CCCCCCceECCCCCEEEEEEeCCCcEEE
Confidence 22111 1345799988877766544433
No 240
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=7.3e-07 Score=102.84 Aligned_cols=246 Identities=15% Similarity=0.148 Sum_probs=143.8
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~ 270 (1149)
+..|.+++.=.+..-++|+|+|.|||+|.+.... +....-.+..++++|+.+|.++.|-.+-+ .-+|-||-|.+||.-
T Consensus 735 ~~~iRai~AidNENSFiSASkDKTVKLWSik~Eg-D~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~ScD~giHlWDPF 812 (1034)
T KOG4190|consen 735 QEKIRAIAAIDNENSFISASKDKTVKLWSIKPEG-DEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASCDGGIHLWDPF 812 (1034)
T ss_pred HHHhHHHHhcccccceeeccCCceEEEEEecccc-CccccceeeeEhhhccCcccceeeeeccc-eeeeccCcceeeccc
Confidence 5566666544445567899999999999987532 11112224567899999999999988764 234458999999974
Q ss_pred CcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEe
Q 001123 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN 349 (1149)
Q Consensus 271 t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~ 349 (1149)
-+..........+ ++ ..+.++|+-.-+.--.++.++ ..|+++.|.+.++-...++
T Consensus 813 igr~Laq~~dapk----------------~~--------a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~k 868 (1034)
T KOG4190|consen 813 IGRLLAQMEDAPK----------------EG--------AGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELK 868 (1034)
T ss_pred ccchhHhhhcCcc----------------cC--------CCceeEecccCcchheeeeccchhhheeeecccccceeeEE
Confidence 3332211111111 11 013344443222222222222 3689999998876443332
Q ss_pred cCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcC
Q 001123 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (1149)
Q Consensus 350 ~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~ 429 (1149)
.... .+....+.+++..+
T Consensus 869 Vcna--------------------------------------------------------------~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 869 VCNA--------------------------------------------------------------PGPNALTRAIAVAD 886 (1034)
T ss_pred eccC--------------------------------------------------------------CCCchheeEEEecc
Confidence 1000 01112344566666
Q ss_pred CCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEE-EecCCEEEEeecCcEEEE-Ee-CCCceeeeeeccCCCeEEE
Q 001123 430 DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL-CTFGSQIWVGYMNGIVQV-LD-LEGNLLGGWVAHSSPVIKM 504 (1149)
Q Consensus 430 Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sl-s~dG~~LaSGs~DGtIrl-WD-~~G~~l~~l~gH~~~V~sL 504 (1149)
.|. +++|-++|+|.+-|. +|+.+..++.-......+ ++..+.|+....|.++-| |- ++|......+--..+..=+
T Consensus 887 ~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepahfl 966 (1034)
T KOG4190|consen 887 KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL 966 (1034)
T ss_pred CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh
Confidence 665 788888999999999 899888776544444444 456788888888999988 87 4565433333222222222
Q ss_pred EecCCeEEeecCCCceeeee
Q 001123 505 AVGAGYIFTLANHGGIRGWN 524 (1149)
Q Consensus 505 a~Dg~~LaSgS~DgtIRlWd 524 (1149)
..-|-.|+++-.-+-++++-
T Consensus 967 qsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 967 QSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred hccCceeEEeccCcEEEEEe
Confidence 22334455555555566663
No 241
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.42 E-value=1.7e-05 Score=88.23 Aligned_cols=279 Identities=16% Similarity=0.198 Sum_probs=147.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCC------------CCEEEEEEeCCCc---E
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR------------GPVLSLCISSYGD---L 255 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~------------~~VtsVafSpdG~---L 255 (1149)
..-+.|+.|+..|.+||||..+|.|.++.-+... . ..+.-...++.|. ..|+.+.+.+++. +
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~--~-~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLY--K-GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeeccccc--c-cceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 4467899999999999999999999999754321 0 0122233455663 5788889888875 3
Q ss_pred EEEECCCcEEEEeCCCcceee---ecCC--CcceeeEE--Eeeeccccccccccccce-eeeecCCeEEEEEcCCCCEEE
Q 001123 256 WSGSEGGGIKIWPWEAIEKAL---SLKP--EERHTAAL--IVERSYIDLRSHLSVNGF-SSILTSDIKNLLSDHSRAKVW 327 (1149)
Q Consensus 256 ~SGS~DgTIRVWdl~t~~~~~---~l~~--~~~~~~a~--~~~~~~~~l~~~~~~~g~-~~~~~~dv~~las~~~~~~v~ 327 (1149)
+....|.|||+|.+....... .+.. ......++ .+... .++--......+ ..++..-++.+....+.....
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~-~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l 180 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGR-HDLEVEASPRRVYANAHTYHINSISVNSDKETFL 180 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeecc-ccceeeeeeeeeccccceeEeeeeeecCccceEe
Confidence 455579999999985421110 0000 00000000 00000 000000000011 112334577788888888899
Q ss_pred EecCCceEEEEcCC-ccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccce-EeecCCc
Q 001123 328 SAGFLSFALWDART-RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNA-IMGAADA 405 (1149)
Q Consensus 328 Sasd~tIrLWD~~T-G~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~-i~G~~d~ 405 (1149)
|+.|--|.||++.- .++. +-|++.|.. +++-+ ..+++-.|.|..-+. +-.+..|
T Consensus 181 SADdLRINLWnlei~d~sF----------nIVDIKP~n---mEeLt-----------eVITsaEFhp~~cn~f~YSSSKG 236 (433)
T KOG1354|consen 181 SADDLRINLWNLEIIDQSF----------NIVDIKPAN---MEELT-----------EVITSAEFHPHHCNVFVYSSSKG 236 (433)
T ss_pred eccceeeeeccccccCCce----------eEEEccccC---HHHHH-----------HHHhhhccCHhHccEEEEecCCC
Confidence 99998999999752 1111 122222210 00000 000001122211111 1111112
Q ss_pred EEEEeec----------------------ccccCCCCceEEEEEcCCCcEEEEeCCCeEEEEeC--CCCeeEeeecCCc-
Q 001123 406 VRRVAAK----------------------GGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP--NGNRLQDFQYLPF- 460 (1149)
Q Consensus 406 v~rv~~~----------------------g~~~~~~~~V~ava~s~Dg~laSgs~DgtIrlWD~--tG~~l~tl~gH~~- 460 (1149)
..|+-+. .-|.+-...|..|.|+++|+.+-.-.=-||++||+ +.+.+.+..-|..
T Consensus 237 tIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~l 316 (433)
T KOG1354|consen 237 TIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYL 316 (433)
T ss_pred cEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhH
Confidence 2222210 11223344677789999998443333369999999 4677777777643
Q ss_pred -----------cEE---EEEec--CCEEEEeecCcEEEEEeCC-C-ceeeeeecc
Q 001123 461 -----------AVQ---CLCTF--GSQIWVGYMNGIVQVLDLE-G-NLLGGWVAH 497 (1149)
Q Consensus 461 -----------~V~---sls~d--G~~LaSGs~DGtIrlWD~~-G-~~l~~l~gH 497 (1149)
.|. -.+++ +.++++|+.....+++++. | +.-.++.+-
T Consensus 317 r~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~as 371 (433)
T KOG1354|consen 317 RSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEAS 371 (433)
T ss_pred HHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeeccccc
Confidence 222 11344 4699999999999999965 4 333444433
No 242
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=2.1e-05 Score=88.91 Aligned_cols=102 Identities=16% Similarity=0.188 Sum_probs=85.3
Q ss_pred CcEEEEeCCCeEEEEeC-CC-CeeEeeecCCccEEEEE--ecCCEEEEeecCcEEEEEeCC-Cceeee-eeccCCCeEEE
Q 001123 431 GMIWTGGANGLLLQWDP-NG-NRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGG-WVAHSSPVIKM 504 (1149)
Q Consensus 431 g~laSgs~DgtIrlWD~-tG-~~l~tl~gH~~~V~sls--~dG~~LaSGs~DGtIrlWD~~-G~~l~~-l~gH~~~V~sL 504 (1149)
.++++++.-+.||+||. .+ +++..|.--.++|.++. ++|++|++|..-|.+..+|+. ++++.. +.|-++.|.+|
T Consensus 217 ~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsi 296 (412)
T KOG3881|consen 217 YKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSI 296 (412)
T ss_pred ceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceE
Confidence 35899999999999999 55 66777777778888875 579999999999999999987 666654 89999999999
Q ss_pred Eec--CCeEEeecCCCceeeeeccCCCCCc
Q 001123 505 AVG--AGYIFTLANHGGIRGWNVTSPGPLD 532 (1149)
Q Consensus 505 a~D--g~~LaSgS~DgtIRlWdl~sp~pld 532 (1149)
..+ ..+|+|+|.|..+||.|+.+-.++.
T Consensus 297 h~hp~~~~las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 297 HCHPTHPVLASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred EEcCCCceEEeeccceeEEEeecccchhhh
Confidence 854 4599999999999999987644443
No 243
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.39 E-value=3.8e-05 Score=92.22 Aligned_cols=95 Identities=18% Similarity=0.112 Sum_probs=54.8
Q ss_pred EEEcCCCc-EEEEeC-CCeEEEEeC--CCCeeEee--ecCCccEEEEEecCCEEEEeecCc---EEEEEeCCCceeeeee
Q 001123 425 LTTSIDGM-IWTGGA-NGLLLQWDP--NGNRLQDF--QYLPFAVQCLCTFGSQIWVGYMNG---IVQVLDLEGNLLGGWV 495 (1149)
Q Consensus 425 va~s~Dg~-laSgs~-DgtIrlWD~--tG~~l~tl--~gH~~~V~sls~dG~~LaSGs~DG---tIrlWD~~G~~l~~l~ 495 (1149)
..++|||+ |+..+. +|...||.+ .+...+.+ .++...-.++++||++|+..+.++ .|.+||+.+.....+.
T Consensus 289 ~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 289 PFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT 368 (427)
T ss_pred eEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc
Confidence 34788886 554443 466677765 34333333 222112235677999998777654 6999998733233333
Q ss_pred cc-CCCeEEEEecCCeEEeecCCCc
Q 001123 496 AH-SSPVIKMAVGAGYIFTLANHGG 519 (1149)
Q Consensus 496 gH-~~~V~sLa~Dg~~LaSgS~Dgt 519 (1149)
.+ ...-.+.++||+.|+.++.++.
T Consensus 369 ~~~~~~~p~~spdg~~l~~~~~~~g 393 (427)
T PRK02889 369 DTTRDESPSFAPNGRYILYATQQGG 393 (427)
T ss_pred CCCCccCceECCCCCEEEEEEecCC
Confidence 22 2222234579999887776553
No 244
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=5e-06 Score=94.73 Aligned_cols=68 Identities=18% Similarity=0.240 Sum_probs=50.2
Q ss_pred EEEEee--CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCC
Q 001123 136 RTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (1149)
Q Consensus 136 ~~l~~~--~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~D 212 (1149)
.+++.. ++.+-+ |.||++|||+........ .+.-| .+.|.+|.|+|||+.|+|-+.|
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l-------------------~e~~~-~~eV~DL~FS~dgk~lasig~d 207 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL-------------------EEIAH-HAEVKDLDFSPDGKFLASIGAD 207 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh-------------------hhHhh-cCccccceeCCCCcEEEEecCC
Confidence 344544 344444 469999999976444322 12234 6789999999999999999999
Q ss_pred CeEEEEECCCCC
Q 001123 213 GRIMCWKMNARL 224 (1149)
Q Consensus 213 GtIRvWdl~~g~ 224 (1149)
..+||++++|.
T Consensus 208 -~~~VW~~~~g~ 218 (398)
T KOG0771|consen 208 -SARVWSVNTGA 218 (398)
T ss_pred -ceEEEEeccCc
Confidence 99999999864
No 245
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.39 E-value=7.9e-05 Score=87.69 Aligned_cols=293 Identities=12% Similarity=0.059 Sum_probs=149.5
Q ss_pred EEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcc
Q 001123 205 VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEER 283 (1149)
Q Consensus 205 ~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~ 283 (1149)
.+++-..+|.|.+.|..+.+ .+.++..+.+.-..++|+|||+ ++.++.||.|-++|+.+.+....+..
T Consensus 8 ~~V~~~~~~~v~viD~~t~~--------~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~--- 76 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNK--------VVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV--- 76 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-S--------EEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----
T ss_pred EEEEecCCCEEEEEECCCCe--------EEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec---
Confidence 34566678999999998754 3556655444445578999998 77888999999999988664332211
Q ss_pred eeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec--CCceEEEEcCCccEEEEEecCCce-------
Q 001123 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQI------- 354 (1149)
Q Consensus 284 ~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas--d~tIrLWD~~TG~~L~~l~~~g~~------- 354 (1149)
......++.+++|..++.+. .+++.++|.+|.+.++.+...+..
T Consensus 77 ---------------------------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~R 129 (369)
T PF02239_consen 77 ---------------------------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESR 129 (369)
T ss_dssp ---------------------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---
T ss_pred ---------------------------CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCC
Confidence 12234567778888777654 578999999999999887543211
Q ss_pred eeEEeeccCCC-ccc--cccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCC
Q 001123 355 ENRVDMSLLPD-FAM--EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG 431 (1149)
Q Consensus 355 ~~~v~~S~~~~-~~~--~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg 431 (1149)
+..+..++... ..+ .+..+++++.-... ... .. ....-........++|++
T Consensus 130 v~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~---------------------~~~-~~----~~i~~g~~~~D~~~dpdg 183 (369)
T PF02239_consen 130 VAAIVASPGRPEFVVNLKDTGEIWVVDYSDP---------------------KNL-KV----TTIKVGRFPHDGGFDPDG 183 (369)
T ss_dssp EEEEEE-SSSSEEEEEETTTTEEEEEETTTS---------------------SCE-EE----EEEE--TTEEEEEE-TTS
T ss_pred ceeEEecCCCCEEEEEEccCCeEEEEEeccc---------------------ccc-ce----eeecccccccccccCccc
Confidence 11112222221 110 01111111111000 000 00 011111223456788998
Q ss_pred c-E-EEEeCCCeEEEEeC-CCCeeEeeec----CCccE-----------EEEEecCCEEEEeecCcEEEEEeCC-Cceee
Q 001123 432 M-I-WTGGANGLLLQWDP-NGNRLQDFQY----LPFAV-----------QCLCTFGSQIWVGYMNGIVQVLDLE-GNLLG 492 (1149)
Q Consensus 432 ~-l-aSgs~DgtIrlWD~-tG~~l~tl~g----H~~~V-----------~sls~dG~~LaSGs~DGtIrlWD~~-G~~l~ 492 (1149)
+ + ++...+..|-++|. +++.+..+.. |..++ ++..-.+...++.-....+.+||.. .+.++
T Consensus 184 ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~ 263 (369)
T PF02239_consen 184 RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVK 263 (369)
T ss_dssp SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEE
T ss_pred ceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEE
Confidence 6 3 44556778999999 6666554422 33333 3333344444343344456678865 78889
Q ss_pred eeeccCCCeEE-EEecCCeEEee----cCCCceeeeeccCCCCCchhhhh-hccccccceeeeeceEEEEEEEEeC
Q 001123 493 GWVAHSSPVIK-MAVGAGYIFTL----ANHGGIRGWNVTSPGPLDSILCK-ELAGKEFLYTRMENLKILAGTWNVG 562 (1149)
Q Consensus 493 ~l~gH~~~V~s-La~Dg~~LaSg----S~DgtIRlWdl~sp~pld~~i~~-~l~~re~~yt~~~~~~i~v~TWNv~ 562 (1149)
.+....+++.- ..|++++++.. ...++|.++|..+......+-.. ...--..+|+... -.+++.-|+-+
T Consensus 264 ~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG-~~v~vS~~~~~ 338 (369)
T PF02239_consen 264 TIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDG-KEVWVSVWDGN 338 (369)
T ss_dssp EEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTS-SEEEEEEE--T
T ss_pred EEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCC-CEEEEEEecCC
Confidence 88887777432 23799999976 45589999998765222111100 0111233444333 46777777765
No 246
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.38 E-value=0.00011 Score=81.40 Aligned_cols=92 Identities=14% Similarity=0.239 Sum_probs=69.2
Q ss_pred EeCCCeEEEEeCCCC---eeEeeecCCccEEEEEe--cCCEEEEeecCcE-EEEEeCC-Cceeeeeec--cCCCeEEEE-
Q 001123 436 GGANGLLLQWDPNGN---RLQDFQYLPFAVQCLCT--FGSQIWVGYMNGI-VQVLDLE-GNLLGGWVA--HSSPVIKMA- 505 (1149)
Q Consensus 436 gs~DgtIrlWD~tG~---~l~tl~gH~~~V~sls~--dG~~LaSGs~DGt-IrlWD~~-G~~l~~l~g--H~~~V~sLa- 505 (1149)
|-.-|.|+|-|+... ....+..|.+.|.|++. +|..||++|..|| |||||.. |.++..++- -...|++|+
T Consensus 155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF 234 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF 234 (346)
T ss_pred CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe
Confidence 334577888888322 34677889999988875 6899999998875 7899964 887777763 234688887
Q ss_pred -ecCCeEEeecCCCceeeeeccC
Q 001123 506 -VGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 506 -~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
++.++|+.+|..||+.++.+..
T Consensus 235 Sp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 235 SPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCCccEEEEEcCCCeEEEEEeec
Confidence 5888899888889999988754
No 247
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.38 E-value=2.4e-06 Score=91.51 Aligned_cols=103 Identities=16% Similarity=0.270 Sum_probs=79.9
Q ss_pred CceEEEEEcCCCc-E--EEEeCCCeEEEEeCCCCeeEeeecCCccEEEEE--ecCCEEEEeec---CcEEEEEeCC-Cce
Q 001123 420 RRTEALTTSIDGM-I--WTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYM---NGIVQVLDLE-GNL 490 (1149)
Q Consensus 420 ~~V~ava~s~Dg~-l--aSgs~DgtIrlWD~tG~~l~tl~gH~~~V~sls--~dG~~LaSGs~---DGtIrlWD~~-G~~ 490 (1149)
..|.+++++|+|. + ++|..++.|.+||++++.+.++. ...++++. ++|++|+.|+. .|.|++||+. .+.
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~ 137 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK 137 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE
Confidence 4588999999986 4 35667889999999988888875 35667664 57999999874 4779999986 566
Q ss_pred eeeeeccCCCeEEEE--ecCCeEEeecC------CCceeeeecc
Q 001123 491 LGGWVAHSSPVIKMA--VGAGYIFTLAN------HGGIRGWNVT 526 (1149)
Q Consensus 491 l~~l~gH~~~V~sLa--~Dg~~LaSgS~------DgtIRlWdl~ 526 (1149)
+.... |. .+..++ |||++++|++. |+.++||+..
T Consensus 138 i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 138 ISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred eeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 66654 33 356666 79999998863 8999999975
No 248
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.37 E-value=0.00016 Score=81.25 Aligned_cols=157 Identities=22% Similarity=0.275 Sum_probs=101.6
Q ss_pred ceeEEEEEeeC---CeEEEeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCC-CEEE
Q 001123 132 GCFLRTIVCTE---EQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS-GVVW 207 (1149)
Q Consensus 132 ~~~l~~l~~~~---~~l~ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg-~~La 207 (1149)
..+||-++=|. .-.+++.|.+||++|-+. .++-. ..+.. ...|.||||-|-+ +-|+
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~------------------Lks~s-QrnvtclawRPlsasela 157 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTK------------------LKSVS-QRNVTCLAWRPLSASELA 157 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCce------------------ecchh-hcceeEEEeccCCcceee
Confidence 36788888774 222346799999999764 22211 11122 5689999999975 5566
Q ss_pred EEeCCCeEEEEECCCCCCCCC------CCccceEEeecCCCCEEEEEEeCCCc-EEEEE-CCCcEEEEeCCCcceeeecC
Q 001123 208 SGHRDGRIMCWKMNARLLDSD------DGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGIKIWPWEAIEKALSLK 279 (1149)
Q Consensus 208 SGS~DGtIRvWdl~~g~~~~~------~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS-~DgTIRVWdl~t~~~~~~l~ 279 (1149)
-|.+-| |.+|......-++. .....+.+-.|| .+|++|.+.+||. |+++| .|..|+|||..++.+.- +.
T Consensus 158 vgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p-L~ 234 (445)
T KOG2139|consen 158 VGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP-LI 234 (445)
T ss_pred eeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc-cc
Confidence 666654 88998754221111 111123344577 8999999999997 77887 57899999998865421 11
Q ss_pred CCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEc
Q 001123 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDA 339 (1149)
Q Consensus 280 ~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~ 339 (1149)
.. +. +.+..+.+++++.+++++. |.+++||..
T Consensus 235 ~~-----------------gl-----------gg~slLkwSPdgd~lfaAt~davfrlw~e 267 (445)
T KOG2139|consen 235 PK-----------------GL-----------GGFSLLKWSPDGDVLFAATCDAVFRLWQE 267 (445)
T ss_pred cc-----------------CC-----------CceeeEEEcCCCCEEEEecccceeeeehh
Confidence 00 00 3345677888888888775 678999953
No 249
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.35 E-value=1.5e-05 Score=88.12 Aligned_cols=173 Identities=12% Similarity=0.114 Sum_probs=116.3
Q ss_pred ccccCCCCccccccceeEEEEEeeCCeEEEeCCCCEEEEeCC-CCCCCCccccccccCCCCCCCCCCceeeeecCCceEE
Q 001123 118 SLEVKPHPLRETQIGCFLRTIVCTEEQLWAGGENGLRVWNLK-ELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMC 196 (1149)
Q Consensus 118 ~l~~~~~pl~e~~~~~~l~~l~~~~~~l~ag~D~tVrvWd~~-~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~ 196 (1149)
|.+..-.|+.|-.-...++++....+++.+--++.|.||... +.+.... .|...-| ..+.|
T Consensus 80 WDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~----------~et~~NP--------kGlC~ 141 (346)
T KOG2111|consen 80 WDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHV----------IETRSNP--------KGLCS 141 (346)
T ss_pred EecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheee----------eecccCC--------CceEe
Confidence 445555566665555566666667888888889999999987 3343332 0000001 11222
Q ss_pred EEEcCCCCEEE-EEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCc-EEEEeCCCcc
Q 001123 197 MVGDEASGVVW-SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG-IKIWPWEAIE 273 (1149)
Q Consensus 197 lafs~dg~~La-SGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgT-IRVWdl~t~~ 273 (1149)
+.-..+..+|| -|..-|.|++=|+..... .......+|...|.+|+++-+|. +||||.-|| |||||..+++
T Consensus 142 ~~~~~~k~~LafPg~k~GqvQi~dL~~~~~------~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~ 215 (346)
T KOG2111|consen 142 LCPTSNKSLLAFPGFKTGQVQIVDLASTKP------NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGT 215 (346)
T ss_pred ecCCCCceEEEcCCCccceEEEEEhhhcCc------CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCc
Confidence 22222334444 466779999999876431 12356789999999999999998 789998876 8999999988
Q ss_pred eeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecC-CceEEEEcCC
Q 001123 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDART 341 (1149)
Q Consensus 274 ~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd-~tIrLWD~~T 341 (1149)
+...+.-.. ...++-+++++++..+|+.++| +|+.+..++.
T Consensus 216 ~l~E~RRG~---------------------------d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 216 LLQELRRGV---------------------------DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EeeeeecCC---------------------------chheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 766542111 1256889999999999988887 6788877653
No 250
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.31 E-value=2.1e-05 Score=91.44 Aligned_cols=130 Identities=12% Similarity=0.030 Sum_probs=82.9
Q ss_pred eeccccceEeecCCcEEEEeec-----ccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEE
Q 001123 391 FFQRSRNAIMGAADAVRRVAAK-----GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQ 463 (1149)
Q Consensus 391 f~~~~~~~i~G~~d~v~rv~~~-----g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~ 463 (1149)
+.++|..+++...||+.++|.+ .++......|.|+++.|+.. ++-+ ..+.+.|=.+ ....+-..+.|.+-|.
T Consensus 112 W~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n~k~i~WkAHDGiiL 190 (737)
T KOG1524|consen 112 WSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAANSKIIRWRAHDGLVL 190 (737)
T ss_pred cCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEe-cCCeEEEeecccccceeEEeccCcEEE
Confidence 4455666777777777777763 23445556777777777754 3332 3344555555 2233444667777777
Q ss_pred EEEec--CCEEEEeecCcEEEEEeCCCceeeeeeccCCCeEEEEecCCeEEeecCCCcee
Q 001123 464 CLCTF--GSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAVGAGYIFTLANHGGIR 521 (1149)
Q Consensus 464 sls~d--G~~LaSGs~DGtIrlWD~~G~~l~~l~gH~~~V~sLa~Dg~~LaSgS~DgtIR 521 (1149)
+++++ ...|++|+.|-..+|||.-|+.+..-..|.-+|+++++.+..++..+.-++.|
T Consensus 191 ~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R 250 (737)
T KOG1524|consen 191 SLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYLLWSYNTAR 250 (737)
T ss_pred EeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccccceeeeeeeeee
Confidence 77654 56788888888888888777777777777778888876544555445555555
No 251
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=7.6e-07 Score=102.67 Aligned_cols=91 Identities=13% Similarity=0.262 Sum_probs=71.3
Q ss_pred EEeCCCeEEEEeC-CCCeeEeee-----cCCccEEEEEe--cCCEEEEeecCcEEEEEeC-CCceeeeeeccCCCeEEEE
Q 001123 435 TGGANGLLLQWDP-NGNRLQDFQ-----YLPFAVQCLCT--FGSQIWVGYMNGIVQVLDL-EGNLLGGWVAHSSPVIKMA 505 (1149)
Q Consensus 435 Sgs~DgtIrlWD~-tG~~l~tl~-----gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~-~G~~l~~l~gH~~~V~sLa 505 (1149)
-++...|||+.|. .++-...++ +.+..+.++++ .|+++|+|-+.|+|-+.|. +|+.+.+|+--......++
T Consensus 846 gcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla 925 (1034)
T KOG4190|consen 846 GCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA 925 (1034)
T ss_pred eccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc
Confidence 3467889999999 565444443 33345667754 6999999999999999995 5999999988777777776
Q ss_pred -ecCCeEEeecCCCceee-eec
Q 001123 506 -VGAGYIFTLANHGGIRG-WNV 525 (1149)
Q Consensus 506 -~Dg~~LaSgS~DgtIRl-Wdl 525 (1149)
+..+.|++...|.++-+ |..
T Consensus 926 apsdq~L~~saldHslaVnWha 947 (1034)
T KOG4190|consen 926 APSDQALAQSALDHSLAVNWHA 947 (1034)
T ss_pred CchhHHHHhhcccceeEeeehh
Confidence 78888998889999998 864
No 252
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.27 E-value=1.2e-06 Score=100.37 Aligned_cols=100 Identities=18% Similarity=0.219 Sum_probs=84.7
Q ss_pred EcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEec--CCEEEEeecCcEEEEEeCC-CceeeeeeccCCCe
Q 001123 427 TSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPV 501 (1149)
Q Consensus 427 ~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~d--G~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V 501 (1149)
|-|--. |++++..|-++--|+ +|+.+..+....+.+..+..+ ...|-.|...|+|.+|.-+ ..++..+..|.++|
T Consensus 217 FLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V 296 (545)
T KOG1272|consen 217 FLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPV 296 (545)
T ss_pred ccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCc
Confidence 334334 678888999999999 899998888777777777544 6788899999999999976 57788888999999
Q ss_pred EEEE--ecCCeEEeecCCCceeeeecc
Q 001123 502 IKMA--VGAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 502 ~sLa--~Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
.+|| ++|+|++|.|.|..++|||+.
T Consensus 297 ~siAv~~~G~YMaTtG~Dr~~kIWDlR 323 (545)
T KOG1272|consen 297 SSIAVDRGGRYMATTGLDRKVKIWDLR 323 (545)
T ss_pred ceEEECCCCcEEeecccccceeEeeec
Confidence 9999 489999999999999999975
No 253
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.25 E-value=2.3e-06 Score=66.57 Aligned_cols=36 Identities=33% Similarity=0.601 Sum_probs=33.6
Q ss_pred ceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEe
Q 001123 233 EVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (1149)
Q Consensus 233 ~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWd 268 (1149)
+..+++||.++|++|+|+|++. |+|||.|++||+||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4678999999999999999987 89999999999997
No 254
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.25 E-value=7.4e-06 Score=94.52 Aligned_cols=248 Identities=17% Similarity=0.206 Sum_probs=135.8
Q ss_pred eEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecC
Q 001123 234 VLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTS 312 (1149)
Q Consensus 234 ~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~ 312 (1149)
...|.+|.|.|+.|.|...|. |+|||.|.+|-+|||..+...+.+. ..|...+ .
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~--SGH~~Nv-----------------------f 189 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE--SGHCNNV-----------------------F 189 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc--cccccch-----------------------h
Confidence 345789999999999999998 8999999999999998876555442 2222111 1
Q ss_pred CeEEEEEcCCCCEEEEecCCceEEEEc-CCccEEEE--EecCCceeeEEeeccCCCccccccceeeEEecCCCCccceee
Q 001123 313 DIKNLLSDHSRAKVWSAGFLSFALWDA-RTRELLKV--FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSF 389 (1149)
Q Consensus 313 dv~~las~~~~~~v~Sasd~tIrLWD~-~TG~~L~~--l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si 389 (1149)
+-+.+-++.+...+-++.|+.+++=-+ .+|.+.++ +..|...+..++.-+..... +-+.+.+..+..+
T Consensus 190 QaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~---------f~S~geD~~v~~~ 260 (559)
T KOG1334|consen 190 QAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKP---------FLSCGEDAVVFHI 260 (559)
T ss_pred hhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCc---------ccccccccceeee
Confidence 122333333333444444555554322 23333221 22222111111111110000 0001111111111
Q ss_pred eeeccc-cceEeecCCcEEEEeecccccCCC--CceEEEEEcCCC--cEEEEeCCCeEEEEeC-C--CC----eeEeeec
Q 001123 390 GFFQRS-RNAIMGAADAVRRVAAKGGFGDDN--RRTEALTTSIDG--MIWTGGANGLLLQWDP-N--GN----RLQDFQY 457 (1149)
Q Consensus 390 ~f~~~~-~~~i~G~~d~v~rv~~~g~~~~~~--~~V~ava~s~Dg--~laSgs~DgtIrlWD~-t--G~----~l~tl~g 457 (1149)
...++. ...++ .+ -.... -...+++..|-. .+++|+.|.-+|++|. . .+ .+..|..
T Consensus 261 Dlr~~~pa~~~~------cr------~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p 328 (559)
T KOG1334|consen 261 DLRQDVPAEKFV------CR------EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCP 328 (559)
T ss_pred eeccCCccceee------ee------ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCC
Confidence 110000 00000 00 00011 134567766654 4899999999999997 2 11 2333333
Q ss_pred C------CccEEEEEe--cCCEEEEeecCcEEEEEeCC---C----------ceee-eeeccCC--CeEEEEe---cCCe
Q 001123 458 L------PFAVQCLCT--FGSQIWVGYMNGIVQVLDLE---G----------NLLG-GWVAHSS--PVIKMAV---GAGY 510 (1149)
Q Consensus 458 H------~~~V~sls~--dG~~LaSGs~DGtIrlWD~~---G----------~~l~-~l~gH~~--~V~sLa~---Dg~~ 510 (1149)
| .-.|+++.+ +|.-|.+.++|--|+++.-+ | ..+. .++||.. .|..+.+ -..|
T Consensus 329 ~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEy 408 (559)
T KOG1334|consen 329 HHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEY 408 (559)
T ss_pred ccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccce
Confidence 2 234778876 57888888999999999743 5 2333 4889975 5667763 4679
Q ss_pred EEeecCCCceeeeeccC
Q 001123 511 IFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 511 LaSgS~DgtIRlWdl~s 527 (1149)
++|||.=|-|-+|+-.+
T Consensus 409 VvSGSDCGhIFiW~K~t 425 (559)
T KOG1334|consen 409 VVSGSDCGHIFIWDKKT 425 (559)
T ss_pred EEecCccceEEEEecch
Confidence 99999999999999543
No 255
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.20 E-value=0.00023 Score=83.79 Aligned_cols=283 Identities=16% Similarity=0.129 Sum_probs=159.8
Q ss_pred CceEEEEEcCCCCE-EEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCC--CCEEEEEEeCCC-cEEEEECCCcEEEE
Q 001123 192 SSVMCMVGDEASGV-VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR--GPVLSLCISSYG-DLWSGSEGGGIKIW 267 (1149)
Q Consensus 192 ~~V~~lafs~dg~~-LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~--~~VtsVafSpdG-~L~SGS~DgTIRVW 267 (1149)
..-+.+.++|||++ +|||-+--.||++|+.. ..+.|.-|. ..|.=..+|.|- +++-=-.|.+|-+-
T Consensus 52 ~ast~ik~s~DGqY~lAtG~YKP~ikvydlan----------LSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefH 121 (703)
T KOG2321|consen 52 TASTRIKVSPDGQYLLATGTYKPQIKVYDLAN----------LSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFH 121 (703)
T ss_pred cccceeEecCCCcEEEEecccCCceEEEEccc----------ceeeeeecccccceeEEEeccchhhheEeecCceeeeh
Confidence 34567889999975 57888999999999975 356677784 456555555553 34444568887665
Q ss_pred eCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEE
Q 001123 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKV 347 (1149)
Q Consensus 268 dl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~ 347 (1149)
..-.......+. +.+.++.-| ..+..++..|+...|.-.++..|..|.-
T Consensus 122 ak~G~hy~~RIP------------~~GRDm~y~-------------------~~scDly~~gsg~evYRlNLEqGrfL~P 170 (703)
T KOG2321|consen 122 AKYGRHYRTRIP------------KFGRDMKYH-------------------KPSCDLYLVGSGSEVYRLNLEQGRFLNP 170 (703)
T ss_pred hhcCeeeeeecC------------cCCcccccc-------------------CCCccEEEeecCcceEEEEccccccccc
Confidence 432111001110 011111101 0111223333345678889999999998
Q ss_pred EecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEE
Q 001123 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (1149)
Q Consensus 348 l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~ 427 (1149)
|..++..++.+.+.+.....+... .+ +.+-||+.-..-.++..+....+. ...+......|+++.|
T Consensus 171 ~~~~~~~lN~v~in~~hgLla~Gt----------~~---g~VEfwDpR~ksrv~~l~~~~~v~-s~pg~~~~~svTal~F 236 (703)
T KOG2321|consen 171 FETDSGELNVVSINEEHGLLACGT----------ED---GVVEFWDPRDKSRVGTLDAASSVN-SHPGGDAAPSVTALKF 236 (703)
T ss_pred cccccccceeeeecCccceEEecc----------cC---ceEEEecchhhhhheeeecccccC-CCccccccCcceEEEe
Confidence 887766555555544322211100 00 011122111011111111110000 0112233446899999
Q ss_pred cCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCC--ccEEEEEe---c-CCEEEEeecCcEEEEEeC-CCceeeeeeccC
Q 001123 428 SIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLP--FAVQCLCT---F-GSQIWVGYMNGIVQVLDL-EGNLLGGWVAHS 498 (1149)
Q Consensus 428 s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~--~~V~sls~---d-G~~LaSGs~DGtIrlWD~-~G~~l~~l~gH~ 498 (1149)
+.||. ++.|.++|.|.|+|+ +.+.+.. ..|. -+|..+.+ + +..|+|. ....++|||- +|+......--.
T Consensus 237 ~d~gL~~aVGts~G~v~iyDLRa~~pl~~-kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~ 314 (703)
T KOG2321|consen 237 RDDGLHVAVGTSTGSVLIYDLRASKPLLV-KDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTS 314 (703)
T ss_pred cCCceeEEeeccCCcEEEEEcccCCceee-cccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccC
Confidence 99986 899999999999999 5555432 2343 46777765 2 3566664 4568999994 588777665433
Q ss_pred CCeEEEE--ecCCeEEeecCCCceeeeeccCCCCCc
Q 001123 499 SPVIKMA--VGAGYIFTLANHGGIRGWNVTSPGPLD 532 (1149)
Q Consensus 499 ~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~sp~pld 532 (1149)
.++.+. +++.++++|-.+..+-.+=+-.-||.-
T Consensus 315 -~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaP 349 (703)
T KOG2321|consen 315 -DLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAP 349 (703)
T ss_pred -CcCceeeecCCceEEEecCCCcceeEEccccCCCc
Confidence 366655 688889998777766666555555543
No 256
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.17 E-value=0.00088 Score=79.58 Aligned_cols=331 Identities=13% Similarity=0.113 Sum_probs=164.6
Q ss_pred cCCCCccccccceeE------EEEEeeCCeEEEe-CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCc
Q 001123 121 VKPHPLRETQIGCFL------RTIVCTEEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSS 193 (1149)
Q Consensus 121 ~~~~pl~e~~~~~~l------~~l~~~~~~l~ag-~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~ 193 (1149)
..|..+|....+... .+.+..++.++++ .++.|.-+|.++|+..... .+.. ....+.. . ...
T Consensus 42 ~~~~~~W~~~~g~g~~~~~~~~sPvv~~~~vy~~~~~g~l~ald~~tG~~~W~~---~~~~-----~~~~~~~-~--~~~ 110 (394)
T PRK11138 42 FTPTTVWSTSVGDGVGDYYSRLHPAVAYNKVYAADRAGLVKALDADTGKEIWSV---DLSE-----KDGWFSK-N--KSA 110 (394)
T ss_pred CCcceeeEEEcCCCCccceeeeccEEECCEEEEECCCCeEEEEECCCCcEeeEE---cCCC-----ccccccc-c--ccc
Confidence 344556665543322 1334567888875 4677888899888876541 0000 0000000 0 000
Q ss_pred e--EEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCCC
Q 001123 194 V--MCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEA 271 (1149)
Q Consensus 194 V--~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t 271 (1149)
. ..+++ ++..|+-|+.+|.+..+|.++|+. +.+..-. +.+.+--.-.++.++.++.|+.|...|.++
T Consensus 111 ~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~--------~W~~~~~-~~~~ssP~v~~~~v~v~~~~g~l~ald~~t 179 (394)
T PRK11138 111 LLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEV--------AWQTKVA-GEALSRPVVSDGLVLVHTSNGMLQALNESD 179 (394)
T ss_pred ccccccEE--ECCEEEEEcCCCEEEEEECCCCCC--------cccccCC-CceecCCEEECCEEEEECCCCEEEEEEccC
Confidence 0 01122 345677788999999999988762 3332221 222221112256677788899999999998
Q ss_pred cceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEecC
Q 001123 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNID 351 (1149)
Q Consensus 272 ~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~~~ 351 (1149)
++............ ..++. + ..+ .. ++..++...++.+...|..+|+.+..+...
T Consensus 180 G~~~W~~~~~~~~~----------~~~~~------~----sP~----v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~ 234 (394)
T PRK11138 180 GAVKWTVNLDVPSL----------TLRGE------S----APA----TA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRIS 234 (394)
T ss_pred CCEeeeecCCCCcc----------cccCC------C----CCE----EE-CCEEEEEcCCCEEEEEEccCChhhheeccc
Confidence 87655442211000 00000 0 000 00 122333344566777888888876654321
Q ss_pred Cce----eeE---EeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEE
Q 001123 352 GQI----ENR---VDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (1149)
Q Consensus 352 g~~----~~~---v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~a 424 (1149)
... ..+ +..+| .+... .++. ...++.........|..+|.. .+. ....
T Consensus 235 ~~~~~~~~~~~~~~~~sP----~v~~~---~vy~------------~~~~g~l~ald~~tG~~~W~~--~~~----~~~~ 289 (394)
T PRK11138 235 QPTGATEIDRLVDVDTTP----VVVGG---VVYA------------LAYNGNLVALDLRSGQIVWKR--EYG----SVND 289 (394)
T ss_pred cCCCccchhcccccCCCc----EEECC---EEEE------------EEcCCeEEEEECCCCCEEEee--cCC----CccC
Confidence 100 000 00000 00000 0000 000111111111122222211 010 0111
Q ss_pred EEEcCCCcEEEEeCCCeEEEEeC-CCCeeEeeecCC-ccEEEEEecCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCe
Q 001123 425 LTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLP-FAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPV 501 (1149)
Q Consensus 425 va~s~Dg~laSgs~DgtIrlWD~-tG~~l~tl~gH~-~~V~sls~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V 501 (1149)
++ ..++.++.++.||.+...|. +|+.+=....-. ....+....+.+|+.++.||.|.+.|.+ |+.+....-+...+
T Consensus 290 ~~-~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~ 368 (394)
T PRK11138 290 FA-VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGF 368 (394)
T ss_pred cE-EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcc
Confidence 11 23567888889999999999 787642221111 1122334457889999999999999964 88877665443444
Q ss_pred EE-EEecCCeEEeecCCCceeeee
Q 001123 502 IK-MAVGAGYIFTLANHGGIRGWN 524 (1149)
Q Consensus 502 ~s-La~Dg~~LaSgS~DgtIRlWd 524 (1149)
.+ ....+..|+-++.||.+..++
T Consensus 369 ~s~P~~~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 369 LSEPVVADDKLLIQARDGTVYAIT 392 (394)
T ss_pred eeCCEEECCEEEEEeCCceEEEEe
Confidence 43 233455788889999887765
No 257
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=98.16 E-value=1.6e-05 Score=88.66 Aligned_cols=37 Identities=27% Similarity=0.449 Sum_probs=27.1
Q ss_pred EEEEEEeCCCCCCchhhcccccCCCCCcceEEEEeeccccc
Q 001123 555 LAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMG 595 (1149)
Q Consensus 555 ~v~TWNv~~~~~~~~~l~~wl~~~~~~~Di~viGlQEi~~~ 595 (1149)
.+.||||++.+.....+..||.. .+|||++ |||+...
T Consensus 2 ri~t~Ni~g~~~~~~~~~~~l~~--~~~DIi~--LQE~~~~ 38 (254)
T TIGR00195 2 KIISWNVNGLRARLHKGLAWLKE--NQPDVLC--LQETKVQ 38 (254)
T ss_pred EEEEEEcCcHHHhHHHHHHHHHh--cCCCEEE--EEecccc
Confidence 58999999876655667778874 4577755 9998653
No 258
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.16 E-value=0.00097 Score=88.35 Aligned_cols=268 Identities=14% Similarity=0.107 Sum_probs=136.5
Q ss_pred CCeEEEe--CCCCEEEEeCCCCCCCCccccccccC-CCCCCCCCCceeeeecCCceEEEEEcCCCCEE-EEEeCCCeEEE
Q 001123 142 EEQLWAG--GENGLRVWNLKELYDESESDSVSVSK-SKGEDGTAPFKESVKGVSSVMCMVGDEASGVV-WSGHRDGRIMC 217 (1149)
Q Consensus 142 ~~~l~ag--~D~tVrvWd~~~g~~~~~~~~~~~~~-~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~L-aSGS~DGtIRv 217 (1149)
++.+|.+ ..+.|++||......... +..|..| ..|....+.| .....+++++++..| ++-...+.|++
T Consensus 579 ~g~lyVaDs~n~rI~v~d~~G~~i~~i-g~~g~~G~~dG~~~~a~f-------~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 579 NNRLFISDSNHNRIVVTDLDGNFIVQI-GSTGEEGLRDGSFEDATF-------NRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred CCeEEEEECCCCeEEEEeCCCCEEEEE-ccCCCcCCCCCchhcccc-------CCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 5667653 466799999864332111 0001111 1111111111 234578999987754 45455678999
Q ss_pred EECCCCCCCCCCCccceEEeec--C---------------CCCEEEEEEeC-CCcE-EEEECCCcEEEEeCCCcceeeec
Q 001123 218 WKMNARLLDSDDGFGEVLSWQA--H---------------RGPVLSLCISS-YGDL-WSGSEGGGIKIWPWEAIEKALSL 278 (1149)
Q Consensus 218 Wdl~~g~~~~~~~~~~~~~l~G--H---------------~~~VtsVafSp-dG~L-~SGS~DgTIRVWdl~t~~~~~~l 278 (1149)
+|+.++. +.++.| . -..-+.|+|+| +|.| ++.+.+++|++||..++... .+
T Consensus 651 id~~~~~---------V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~ 720 (1057)
T PLN02919 651 IDFVNET---------VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VF 720 (1057)
T ss_pred EecCCCE---------EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EE
Confidence 9987754 333321 0 01225799999 4565 68888999999998765321 11
Q ss_pred CCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEe--cCCceEEEEcCCccEEEEEecCCceee
Q 001123 279 KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA--GFLSFALWDARTRELLKVFNIDGQIEN 356 (1149)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sa--sd~tIrLWD~~TG~~L~~l~~~g~~~~ 356 (1149)
.+.+.... ..+...... .-.....+++++++..++.+ .++.|++||+.++.......++...
T Consensus 721 ~G~G~~~~----------~~g~~~~~~----~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~-- 784 (1057)
T PLN02919 721 SGDGYERN----------LNGSSGTST----SFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF-- 784 (1057)
T ss_pred ecCCcccc----------CCCCccccc----cccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc--
Confidence 11110000 000000000 00123446777777755543 3578999999887642221111100
Q ss_pred EEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCcEE-E
Q 001123 357 RVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIW-T 435 (1149)
Q Consensus 357 ~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~la-S 435 (1149)
+ ... ..| |..++... . ........++++++|.++ +
T Consensus 785 ----~---~~l---------------------~~f---------G~~dG~g~---~----~~l~~P~Gvavd~dG~LYVA 820 (1057)
T PLN02919 785 ----S---DNL---------------------FKF---------GDHDGVGS---E----VLLQHPLGVLCAKDGQIYVA 820 (1057)
T ss_pred ----C---ccc---------------------ccc---------cCCCCchh---h----hhccCCceeeEeCCCcEEEE
Confidence 0 000 000 00011000 0 001123467788888864 5
Q ss_pred EeCCCeEEEEeCCCCeeEeeecCC--------------ccEEEEE--ecCCEEEEeecCcEEEEEeCC
Q 001123 436 GGANGLLLQWDPNGNRLQDFQYLP--------------FAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 436 gs~DgtIrlWD~tG~~l~tl~gH~--------------~~V~sls--~dG~~LaSGs~DGtIrlWD~~ 487 (1149)
-+.+++|++||.++..+.++.+.. .....|+ .+|+.+++-+.+++|++||++
T Consensus 821 Ds~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 821 DSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred ECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 666889999999544444443311 1233443 457777777778888888875
No 259
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.15 E-value=8e-06 Score=105.40 Aligned_cols=89 Identities=19% Similarity=0.259 Sum_probs=70.2
Q ss_pred CCCeEEEEeC--CC--CeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEEEEecCCe
Q 001123 438 ANGLLLQWDP--NG--NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGAGY 510 (1149)
Q Consensus 438 ~DgtIrlWD~--tG--~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa~Dg~~ 510 (1149)
.++.+.+||. .+ .++. ++|.+.++++++ .-+.|+||+.+|.|.|||+. .++++.|++ +- --.+
T Consensus 2313 d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-------~~-~~~~ 2382 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-------LD-TREY 2382 (2439)
T ss_pred CCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-------hh-hhhe
Confidence 4688999998 33 4566 789999988865 56899999999999999987 567777765 22 3458
Q ss_pred EEeecCCCceeeeeccCCCCCchhhh
Q 001123 511 IFTLANHGGIRGWNVTSPGPLDSILC 536 (1149)
Q Consensus 511 LaSgS~DgtIRlWdl~sp~pld~~i~ 536 (1149)
+++|+..|.||||++..++-+....-
T Consensus 2383 f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2383 FVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred eeccCcccceEEEEccccchhhcCch
Confidence 99999999999999998876654433
No 260
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.13 E-value=0.00084 Score=88.94 Aligned_cols=257 Identities=13% Similarity=0.104 Sum_probs=141.7
Q ss_pred EEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeec--------------CCCCEEEEEEeCCCc-EE-E
Q 001123 195 MCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA--------------HRGPVLSLCISSYGD-LW-S 257 (1149)
Q Consensus 195 ~~lafs~d-g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~G--------------H~~~VtsVafSpdG~-L~-S 257 (1149)
.-++++++ |.+.++-+..+.|++||..+.. +..+.+ +-..-..|++++++. |+ +
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~---------i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVa 641 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF---------IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVA 641 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCE---------EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEE
Confidence 35889875 6788888999999999987532 212111 112347899999876 54 4
Q ss_pred EECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEE-E-ecCCceE
Q 001123 258 GSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-S-AGFLSFA 335 (1149)
Q Consensus 258 GS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~-S-asd~tIr 335 (1149)
-...+.|+++|+.++.- .++.+.+... .+..+.. .+..... ..-..+++++.++.++ + .+++.|+
T Consensus 642 Dt~n~~Ir~id~~~~~V-~tlag~G~~g---------~~~~gg~--~~~~~~l-n~P~gVa~dp~~g~LyVad~~~~~I~ 708 (1057)
T PLN02919 642 DTENHALREIDFVNETV-RTLAGNGTKG---------SDYQGGK--KGTSQVL-NSPWDVCFEPVNEKVYIAMAGQHQIW 708 (1057)
T ss_pred eCCCceEEEEecCCCEE-EEEeccCccc---------CCCCCCh--hhhHhhc-CCCeEEEEecCCCeEEEEECCCCeEE
Confidence 55567899999876431 1121110000 0000000 0000000 1113456666444443 3 3457899
Q ss_pred EEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccc
Q 001123 336 LWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGF 415 (1149)
Q Consensus 336 LWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~ 415 (1149)
+||..+|.. .++.+++.... .. + ... .
T Consensus 709 v~d~~~g~v-~~~~G~G~~~~--------------------~~--g--------------------~~~----------~ 735 (1057)
T PLN02919 709 EYNISDGVT-RVFSGDGYERN--------------------LN--G--------------------SSG----------T 735 (1057)
T ss_pred EEECCCCeE-EEEecCCcccc--------------------CC--C--------------------Ccc----------c
Confidence 999887754 33433332100 00 0 000 0
Q ss_pred cCCCCceEEEEEcCCCc-EE-EEeCCCeEEEEeC-CCCeeEeeec--------------CC--------ccEEEE--Eec
Q 001123 416 GDDNRRTEALTTSIDGM-IW-TGGANGLLLQWDP-NGNRLQDFQY--------------LP--------FAVQCL--CTF 468 (1149)
Q Consensus 416 ~~~~~~V~ava~s~Dg~-la-Sgs~DgtIrlWD~-tG~~l~tl~g--------------H~--------~~V~sl--s~d 468 (1149)
.........+++++||. |+ +-+.++.|++||+ +|... .+.+ +. ..-..+ ..+
T Consensus 736 ~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~-~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~d 814 (1057)
T PLN02919 736 STSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSR-LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKD 814 (1057)
T ss_pred cccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE-EEEecccccCcccccccCCCCchhhhhccCCceeeEeCC
Confidence 00012234577888875 54 5556789999998 44321 1110 00 011244 346
Q ss_pred CCEEEEeecCcEEEEEeCCCceeeeeecc--------------CCCeEEEE--ecCCeEEeecCCCceeeeeccC
Q 001123 469 GSQIWVGYMNGIVQVLDLEGNLLGGWVAH--------------SSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 469 G~~LaSGs~DGtIrlWD~~G~~l~~l~gH--------------~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
|..+++-+.+++|++||.++..+.++.|. -.....|+ .+|+.+++-+.+++||+||+.+
T Consensus 815 G~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 815 GQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred CcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 88888888899999999875544443332 22345555 5788888888999999999865
No 261
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.13 E-value=0.00026 Score=78.61 Aligned_cols=240 Identities=10% Similarity=0.068 Sum_probs=153.7
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCC-cEEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-DLWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG-~L~SGS~DgTIRVWdl 269 (1149)
..+|+|.||++|++.+|.+-....|.|+.+.+.. ..+...+|+-|...|++|.++|.+ +|+|||.|....||..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~-----~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-----LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCC-----CceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 4689999999999999999999999999987643 245678899999999999999987 5999999999999987
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecC-CceEEEEcCCccEEEEE
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVF 348 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd-~tIrLWD~~TG~~L~~l 348 (1149)
..+. ....++.+ ++ .+...+++-.++...+++.++. ..|.+|-.+.
T Consensus 85 ~~~~---------~WkptlvL------lR-----------iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~------- 131 (361)
T KOG1523|consen 85 PSGG---------TWKPTLVL------LR-----------INRAATCVKWSPKENKFAVGSGARLISVCYYEQ------- 131 (361)
T ss_pred CCCC---------eeccceeE------EE-----------eccceeeEeecCcCceEEeccCccEEEEEEEec-------
Confidence 3221 11111100 10 1234566677777777766553 5577776432
Q ss_pred ecCCceeeEEeeccCCCccccccceeeEEecCCCC-ccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEE
Q 001123 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKD-KAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (1149)
Q Consensus 349 ~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~-~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~ 427 (1149)
... |.-+++- +.+ ...|.++.+
T Consensus 132 --ENd-----------------------WWVsKhikkPi--------------------------------rStv~sldW 154 (361)
T KOG1523|consen 132 --END-----------------------WWVSKHIKKPI--------------------------------RSTVTSLDW 154 (361)
T ss_pred --ccc-----------------------eehhhhhCCcc--------------------------------ccceeeeec
Confidence 111 1111111 110 123445556
Q ss_pred cCCCc-EEEEeCCCeEEEEeC-------------------CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEe
Q 001123 428 SIDGM-IWTGGANGLLLQWDP-------------------NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (1149)
Q Consensus 428 s~Dg~-laSgs~DgtIrlWD~-------------------tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD 485 (1149)
.|++- +++||.|+.+|+++. =|+++.++....+.|..+.+ +|.+|+=.+.|+++.+=|
T Consensus 155 hpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 155 HPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVD 234 (361)
T ss_pred cCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEee
Confidence 66665 456777777777642 14567666566677777755 488888888888888888
Q ss_pred CCC--ceeeeeeccCCCeEEEEe-cCCeEEeecCCCceeeeec
Q 001123 486 LEG--NLLGGWVAHSSPVIKMAV-GAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 486 ~~G--~~l~~l~gH~~~V~sLa~-Dg~~LaSgS~DgtIRlWdl 525 (1149)
..+ +.+.....-.-+-.++.+ ....++.|++|+.=-+...
T Consensus 235 a~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf~~ 277 (361)
T KOG1523|consen 235 AAGPSERVQSVATAQLPLLSVSWISENSVVAAGYDCGPVLFVT 277 (361)
T ss_pred cCCCchhccchhhccCCceeeEeecCCceeecCCCCCceEEEe
Confidence 553 233322222256666663 5556666777755545543
No 262
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.09 E-value=0.00036 Score=78.51 Aligned_cols=180 Identities=14% Similarity=0.115 Sum_probs=106.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecC-CCCEEEEEEeCCCc--EEEEECCCcEEEEeCC
Q 001123 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYGD--LWSGSEGGGIKIWPWE 270 (1149)
Q Consensus 194 V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH-~~~VtsVafSpdG~--L~SGS~DgTIRVWdl~ 270 (1149)
+.-+++.+-=-.+|++..|-+||+++-.. . +...++.- +.-|++|+|-|.+. |+-|.. +-|.+|...
T Consensus 101 lr~~aWhqH~~~fava~nddvVriy~kss-t--------~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s 170 (445)
T KOG2139|consen 101 LRGVAWHQHIIAFAVATNDDVVRIYDKSS-T--------CPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDS 170 (445)
T ss_pred eeeEeechhhhhhhhhccCcEEEEeccCC-C--------CCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcC
Confidence 44567777555678899999999999765 2 23344432 56799999999874 666655 459999875
Q ss_pred Cccee-eecCC-CcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec--CCceEEEEcCCccEEE
Q 001123 271 AIEKA-LSLKP-EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLK 346 (1149)
Q Consensus 271 t~~~~-~~l~~-~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas--d~tIrLWD~~TG~~L~ 346 (1149)
..... ..... ...+... ++. .-+..|..+...+++..+++++ +..|+|||+.+|.++.
T Consensus 171 ~tln~~r~~~~~s~~~~qv---------l~~---------pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p 232 (445)
T KOG2139|consen 171 RTLNANRNIRMMSTHHLQV---------LQD---------PGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP 232 (445)
T ss_pred cccccccccccccccchhh---------eeC---------CCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc
Confidence 42111 00000 0001000 000 0113577888889999888876 4579999999987543
Q ss_pred EEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecc------cccCCCC
Q 001123 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG------GFGDDNR 420 (1149)
Q Consensus 347 ~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g------~~~~~~~ 420 (1149)
... +.....+-+.++|++..++...-|++.++|... .-.-..+
T Consensus 233 L~~-------------------------------~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsg 281 (445)
T KOG2139|consen 233 LIP-------------------------------KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSG 281 (445)
T ss_pred ccc-------------------------------cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCC
Confidence 220 000112234566666667777777777777311 1111223
Q ss_pred ceEEEEEcCCCc
Q 001123 421 RTEALTTSIDGM 432 (1149)
Q Consensus 421 ~V~ava~s~Dg~ 432 (1149)
+|....++|+|.
T Consensus 282 rvqtacWspcGs 293 (445)
T KOG2139|consen 282 RVQTACWSPCGS 293 (445)
T ss_pred ceeeeeecCCCC
Confidence 566666777765
No 263
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=98.08 E-value=6.6e-05 Score=82.84 Aligned_cols=136 Identities=18% Similarity=0.179 Sum_probs=73.8
Q ss_pred ceEEEEEEEEeCCCCCCchhhcccccC-------CCCCcceEEEEeeccccccchhhhhhhhhhccCCCCcchhhHHHHH
Q 001123 551 NLKILAGTWNVGQGRASQDALISWLGS-------AASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMI 623 (1149)
Q Consensus 551 ~~~i~v~TWNv~~~~~~~~~l~~wl~~-------~~~~~Di~viGlQEi~~~~~~~~~~~~ke~~~~~~~~~~~~W~~~i 623 (1149)
..++.+.|||+..+.+.. ..++.. ....+|| |+|||++-.-+. .+ .....|...+
T Consensus 7 ~~~~~v~TyNih~~~~~~---d~r~~~~r~~~~i~~~~~Di--v~LQEv~~~~~~-----~r--------~~~~~~~~~~ 68 (259)
T COG3568 7 QARFKVLTYNIHKGFGAF---DRRFDLPRIAEVIREVGADI--VALQEVDGAFGR-----HR--------DGLLDLPHLL 68 (259)
T ss_pred cceeEEEEEEEEEccCcc---CceecHHHHHHHHHhhccCe--eeeecccccccc-----cc--------cccchhHHHH
Confidence 345889999998766642 223321 1122564 789999742110 01 0112344444
Q ss_pred hcccCCC-----CcEEEEeeeccceeeeeeeeeccccCccceeEeeeEee--cccccccCcceeEEEEEEe-ceEEEEee
Q 001123 624 GKILDDG-----STFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPC--GFGRAIGNKGAVGLRVRVY-DRIMCFVN 695 (1149)
Q Consensus 624 ~~~L~~~-----~~y~~v~s~qL~Gl~l~vfvr~~l~~~i~~v~~~~v~t--G~~g~~gNKGaV~ir~~~~-~t~lcFVn 695 (1149)
...+... ..|..+..+..-|.+++- +-.|.+|..-.++. |+ --.|++-+++... +..|-++|
T Consensus 69 ~~~~~~~~~~~~~~~~a~~~~~~~GnaiLS------~~pi~~v~~~~lp~~~~~----~~Rgal~a~~~~~~g~~l~V~~ 138 (259)
T COG3568 69 GRLGLAPYWWSGAAFGAVYGEGQHGNAILS------RLPIRDVENLALPDPTGL----EPRGALLAEIELPGGKPLRVIN 138 (259)
T ss_pred HHhcCCccccchhhhhhhcccceeeeEEEe------cCcccchhhccCCCCCCC----CCceeEEEEEEcCCCCEEEEEE
Confidence 4433211 111112223333443333 22455555555553 33 2478999999885 67999999
Q ss_pred ecccccchhHHHHHHHHHHHHH
Q 001123 696 CHFAAHLEAVNRRNADFDHVYR 717 (1149)
Q Consensus 696 ~HLaA~~~~~~~Rn~d~~~I~~ 717 (1149)
.||.=.. +.|-++...|+.
T Consensus 139 ~HL~l~~---~~R~~Q~~~L~~ 157 (259)
T COG3568 139 AHLGLSE---ESRLRQAAALLA 157 (259)
T ss_pred EeccccH---HHHHHHHHHHHh
Confidence 9999443 457777777776
No 264
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.07 E-value=0.0011 Score=79.63 Aligned_cols=51 Identities=16% Similarity=0.042 Sum_probs=36.7
Q ss_pred eEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECC---CcEEEEeCCCcc
Q 001123 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG---GGIKIWPWEAIE 273 (1149)
Q Consensus 214 tIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~D---gTIRVWdl~t~~ 273 (1149)
.|.++|.+++. ...+..|...+.+.+|||||+ |+..+.+ ..|.+||+.+++
T Consensus 180 ~l~~~d~~g~~---------~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~ 234 (430)
T PRK00178 180 TLQRSDYDGAR---------AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR 234 (430)
T ss_pred EEEEECCCCCC---------ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC
Confidence 47777777643 445567788999999999997 6554433 368889997764
No 265
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.00021 Score=81.18 Aligned_cols=210 Identities=17% Similarity=0.257 Sum_probs=126.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc--EEEEECC--CcEEE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEG--GGIKI 266 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~--L~SGS~D--gTIRV 266 (1149)
+.+|..++. ....|.++-.+|.+.+|....+..- . .....|.-| .++..|.-++... +++|+.. ..+++
T Consensus 105 ~~~I~gl~~--~dg~Litc~~sG~l~~~~~k~~d~h-s---s~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lki 177 (412)
T KOG3881|consen 105 TKSIKGLKL--ADGTLITCVSSGNLQVRHDKSGDLH-S---SKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKI 177 (412)
T ss_pred cccccchhh--cCCEEEEEecCCcEEEEeccCCccc-c---ccceeeecC-CceeeeccCCCCCceEecCchhcccceee
Confidence 566666654 3457888899999999999865420 0 112223322 5566666666443 4679988 89999
Q ss_pred EeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEE
Q 001123 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELL 345 (1149)
Q Consensus 267 Wdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L 345 (1149)
||+++.++......-.. ...+++.-.|. .++..+--++ ...++++. .+.+|+||.+.++
T Consensus 178 wdle~~~qiw~aKNvpn---------D~L~LrVPvW~--------tdi~Fl~g~~-~~~fat~T~~hqvR~YDt~~qR-- 237 (412)
T KOG3881|consen 178 WDLEQSKQIWSAKNVPN---------DRLGLRVPVWI--------TDIRFLEGSP-NYKFATITRYHQVRLYDTRHQR-- 237 (412)
T ss_pred eecccceeeeeccCCCC---------ccccceeeeee--------ccceecCCCC-CceEEEEecceeEEEecCcccC--
Confidence 99988755443221110 01112111111 2222211111 23344433 3557777766432
Q ss_pred EEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEE
Q 001123 346 KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEAL 425 (1149)
Q Consensus 346 ~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~av 425 (1149)
+++..+.| ....+.++
T Consensus 238 --------------------------------------RPV~~fd~--------------------------~E~~is~~ 253 (412)
T KOG3881|consen 238 --------------------------------------RPVAQFDF--------------------------LENPISST 253 (412)
T ss_pred --------------------------------------cceeEecc--------------------------ccCcceee
Confidence 11111111 12234455
Q ss_pred EEcCCCc-EEEEeCCCeEEEEeC-CCCeeEe-eecCCccEEEEEec--CCEEEEeecCcEEEEEeCCC-cee
Q 001123 426 TTSIDGM-IWTGGANGLLLQWDP-NGNRLQD-FQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLEG-NLL 491 (1149)
Q Consensus 426 a~s~Dg~-laSgs~DgtIrlWD~-tG~~l~t-l~gH~~~V~sls~d--G~~LaSGs~DGtIrlWD~~G-~~l 491 (1149)
...|+|. |++|..-|.+..+|+ .|+.+.. +.+-.+.|.+|... +++||+++.|..+||+|+.. +++
T Consensus 254 ~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 254 GLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred eecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 5667765 789999999999999 5666655 88888999999764 47999999999999999874 444
No 266
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.01 E-value=1.8e-05 Score=89.96 Aligned_cols=77 Identities=18% Similarity=0.229 Sum_probs=64.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEE-eecCCCCEEEEEEeCCCcEEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLS-WQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~-l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl 269 (1149)
-+-++.|+++||++.|.++.+|.+||+=....-- .+.+ +-||+.-|..++.-++-.|+|||.|+|+|+||+
T Consensus 151 vSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f--------~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 151 VSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF--------VIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDI 222 (390)
T ss_pred hhhhheeeecCCCCEEEEecCCceEEEEecCccc--------chhhhccccHhheeeeeeccCceeeecCCCCcEEEEec
Confidence 7789999999999999999999999986554311 1223 259999999999998766899999999999999
Q ss_pred CCccee
Q 001123 270 EAIEKA 275 (1149)
Q Consensus 270 ~t~~~~ 275 (1149)
.++..+
T Consensus 223 ~sgk~L 228 (390)
T KOG3914|consen 223 TSGKLL 228 (390)
T ss_pred ccCCcc
Confidence 988754
No 267
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=0.0014 Score=77.52 Aligned_cols=108 Identities=19% Similarity=0.259 Sum_probs=89.2
Q ss_pred CCCCceEEEEEcCCCc---EEEEeCCCeEEEEeCCCCeeEeeecCCccEEEE--EecCCEEEEeec---CcEEEEEeCC-
Q 001123 417 DDNRRTEALTTSIDGM---IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCL--CTFGSQIWVGYM---NGIVQVLDLE- 487 (1149)
Q Consensus 417 ~~~~~V~ava~s~Dg~---laSgs~DgtIrlWD~tG~~l~tl~gH~~~V~sl--s~dG~~LaSGs~---DGtIrlWD~~- 487 (1149)
...+.|.++.++++|+ ++.|-+-.++-|+|+.|+.+..|.. ++-+++ ++.|.+|+.++. -|.|.|||+.
T Consensus 268 ~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~e--gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 268 LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPE--GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCC--CCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence 3467899999999995 5578888999999999999988864 455555 456999988874 5899999976
Q ss_pred CceeeeeeccCCCeEEEEecCCeEEeecC------CCceeeeecc
Q 001123 488 GNLLGGWVAHSSPVIKMAVGAGYIFTLAN------HGGIRGWNVT 526 (1149)
Q Consensus 488 G~~l~~l~gH~~~V~sLa~Dg~~LaSgS~------DgtIRlWdl~ 526 (1149)
-+++..+.+-...+..-++||++++|+.. |+.+|||+..
T Consensus 346 ~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 346 RKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred hhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 67899999888888888899999998853 8999999964
No 268
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.01 E-value=0.00014 Score=81.38 Aligned_cols=91 Identities=21% Similarity=0.299 Sum_probs=73.6
Q ss_pred EEeCCCeEEEEeC--CC-CeeEeeecCCccEEEEEecC--CEEEEeecCcEEEEEeCCCc--eeeeeeccCCCeEEEE--
Q 001123 435 TGGANGLLLQWDP--NG-NRLQDFQYLPFAVQCLCTFG--SQIWVGYMNGIVQVLDLEGN--LLGGWVAHSSPVIKMA-- 505 (1149)
Q Consensus 435 Sgs~DgtIrlWD~--tG-~~l~tl~gH~~~V~sls~dG--~~LaSGs~DGtIrlWD~~G~--~l~~l~gH~~~V~sLa-- 505 (1149)
.|...|.|.+-.+ ++ ..+.++.+|...|.+++.|+ +.|.+|+.|..|-+||+-|+ ....+.||.+.|..+.
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA 249 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence 4444455554444 33 67889999999999999874 79999999999999998754 4678899999999886
Q ss_pred ecCCeEEeecCCCceeeeec
Q 001123 506 VGAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 506 ~Dg~~LaSgS~DgtIRlWdl 525 (1149)
.--+.++|++.||.|-+|+.
T Consensus 250 ~~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 250 QHTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred hhheeeeeccCCCeEEEEec
Confidence 36678999999999999983
No 269
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=97.96 E-value=0.00012 Score=81.53 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=27.2
Q ss_pred EEEEEEeCCCCCCc-hhhcccccCCCCCcceEEEEeecccc
Q 001123 555 LAGTWNVGQGRASQ-DALISWLGSAASDVGIVVVGLQEVEM 594 (1149)
Q Consensus 555 ~v~TWNv~~~~~~~-~~l~~wl~~~~~~~Di~viGlQEi~~ 594 (1149)
-++|||||+-+... ..+.+||.. .+||| |+|||+-+
T Consensus 2 ki~swNVNgir~~~~~~~~~~l~~--~~~DI--iclQEtK~ 38 (250)
T PRK13911 2 KLISWNVNGLRACMTKGFMDFFNS--VDADV--FCIQESKM 38 (250)
T ss_pred EEEEEEeCChhHhhhhhHHHHHHh--cCCCE--EEEEeecc
Confidence 58999999877654 358889974 45775 67999855
No 270
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.95 E-value=3.4e-05 Score=99.90 Aligned_cols=213 Identities=19% Similarity=0.245 Sum_probs=133.6
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEee-cCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCC
Q 001123 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (1149)
Q Consensus 193 ~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~-GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~ 270 (1149)
.|.|+.-.|...+-+||+.||.||+|.-..++ .+.+|+ +-...|+.+.|+..|. ..-+-.||-+-+|.+.
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~--------~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQ--------QVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCC--------eEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC
Confidence 46778778888889999999999999976654 244443 2238899999999986 5566679999999885
Q ss_pred CcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec----CCceEEEEcCCccEEE
Q 001123 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG----FLSFALWDARTRELLK 346 (1149)
Q Consensus 271 t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas----d~tIrLWD~~TG~~L~ 346 (1149)
. +.... ...|-. ...|.+.+. ..+++++ ++.+-+||.-
T Consensus 2282 p--k~~~s--~qchnk-----------------------~~~Df~Fi~-----s~~~tag~s~d~~n~~lwDtl------ 2323 (2439)
T KOG1064|consen 2282 P--KPYTS--WQCHNK-----------------------ALSDFRFIG-----SLLATAGRSSDNRNVCLWDTL------ 2323 (2439)
T ss_pred C--cceec--cccCCc-----------------------cccceeeee-----hhhhccccCCCCCcccchhcc------
Confidence 2 11110 000100 012333333 2233332 3568888842
Q ss_pred EEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEE
Q 001123 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (1149)
Q Consensus 347 ~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava 426 (1149)
..+... ++. ..|...+++++
T Consensus 2324 --~~~~~s---------------------~v~-------------------------------------~~H~~gaT~l~ 2343 (2439)
T KOG1064|consen 2324 --LPPMNS---------------------LVH-------------------------------------TCHDGGATVLA 2343 (2439)
T ss_pred --cCcccc---------------------eee-------------------------------------eecCCCceEEE
Confidence 111100 000 12344456677
Q ss_pred EcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEecCCEEEEeecCcEEEEEeCCC-ceeeeee---ccCCC
Q 001123 427 TSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEG-NLLGGWV---AHSSP 500 (1149)
Q Consensus 427 ~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~dG~~LaSGs~DGtIrlWD~~G-~~l~~l~---gH~~~ 500 (1149)
+.|..+ ++||+.+|.|++||+ ..+.++++.. +. --.++.+|+..|+|+||++++ .++.++. +|.+-
T Consensus 2344 ~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gf 2415 (2439)
T KOG1064|consen 2344 YAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGF 2415 (2439)
T ss_pred EcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccch
Confidence 778766 789999999999999 5566666653 11 356899999999999999873 4555554 34432
Q ss_pred --eEEEE--e-cCCeEEeecCCCc
Q 001123 501 --VIKMA--V-GAGYIFTLANHGG 519 (1149)
Q Consensus 501 --V~sLa--~-Dg~~LaSgS~Dgt 519 (1149)
++... . ....|+|++.|++
T Consensus 2416 Fr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2416 FRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred hhhcCceeeeccCceEEEecCCCC
Confidence 11122 2 4567888888875
No 271
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.94 E-value=0.0039 Score=67.82 Aligned_cols=96 Identities=21% Similarity=0.408 Sum_probs=64.8
Q ss_pred CCcEEEEeCCCeEEEEeC-CCCeeEeeecCCcc----E-------EEEEecCCEEEEeecCc-EEEEEeCC-Cceeeeee
Q 001123 430 DGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFA----V-------QCLCTFGSQIWVGYMNG-IVQVLDLE-GNLLGGWV 495 (1149)
Q Consensus 430 Dg~laSgs~DgtIrlWD~-tG~~l~tl~gH~~~----V-------~sls~dG~~LaSGs~DG-tIrlWD~~-G~~l~~l~ 495 (1149)
++.++.+..++.|..+|+ +|+.+-....+... + ..+...+..++.++.+| .+.+ |++ |+.+ |.
T Consensus 122 ~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~--w~ 198 (238)
T PF13360_consen 122 GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKL--WS 198 (238)
T ss_dssp TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEE--EE
T ss_pred cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEE--EE
Confidence 445777778999999998 89887666553322 1 23333444788888787 4666 976 6644 33
Q ss_pred ccCCCeEE-EEecCCeEEeecCCCceeeeeccCC
Q 001123 496 AHSSPVIK-MAVGAGYIFTLANHGGIRGWNVTSP 528 (1149)
Q Consensus 496 gH~~~V~s-La~Dg~~LaSgS~DgtIRlWdl~sp 528 (1149)
.....+.. ...++..|+.++.|+.|..||+.+.
T Consensus 199 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 199 KPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp ECSS-ECECEECCCTEEEEEETTTEEEEEETTTT
T ss_pred ecCCCccCCceeeCCEEEEEeCCCEEEEEECCCC
Confidence 33344555 5578888888889999999998763
No 272
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.92 E-value=4.2e-05 Score=91.67 Aligned_cols=223 Identities=13% Similarity=0.173 Sum_probs=123.4
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc--EEEEECCCcEEEEeCCCcceeeecCCC
Q 001123 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPE 281 (1149)
Q Consensus 204 ~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~--L~SGS~DgTIRVWdl~t~~~~~~l~~~ 281 (1149)
.+++|-+.-. -.+|.+.... .+.+ -..+.||+.+|+.+-|.|... |+++|.|..+..||+.+...-+-. ..
T Consensus 83 ~wiVsts~qk-aiiwnlA~ss---~~aI--ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys-~~ 155 (1081)
T KOG0309|consen 83 YWIVSTSNQK-AIIWNLAKSS---SNAI--EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS-TS 155 (1081)
T ss_pred eeEEecCcch-hhhhhhhcCC---ccce--EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceee-ee
Confidence 3455544443 4489886532 1111 234679999999999998764 799999999999999653211100 00
Q ss_pred cceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCcc-EEEEEecCCceeeEEee
Q 001123 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRE-LLKVFNIDGQIENRVDM 360 (1149)
Q Consensus 282 ~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~-~L~~l~~~g~~~~~v~~ 360 (1149)
..+. ...+|+.-. .+...+++.-...|++||.+-|. .+..++++-..+
T Consensus 156 ~w~s------------------------~asqVkwny--k~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~v----- 204 (1081)
T KOG0309|consen 156 SWRS------------------------AASQVKWNY--KDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSV----- 204 (1081)
T ss_pred cccc------------------------cCceeeecc--cCcchhhhccCCceEEEeccCCCcceEEecccceee-----
Confidence 0000 012233221 12234444445679999998653 444444322111
Q ss_pred ccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcC--CCcEEEEeC
Q 001123 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI--DGMIWTGGA 438 (1149)
Q Consensus 361 S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~--Dg~laSgs~ 438 (1149)
..+.|.. -+.+++.+.
T Consensus 205 --------------------------------------------------------------n~~~fnr~~~s~~~s~~~ 222 (1081)
T KOG0309|consen 205 --------------------------------------------------------------NSIDFNRFKYSEIMSSSN 222 (1081)
T ss_pred --------------------------------------------------------------ehHHHhhhhhhhhcccCC
Confidence 1111111 124788999
Q ss_pred CCeEEEEeC-CC--CeeEeeecCCccEE--EEEecC--CEEE--Eee-------cCcEEEEEeCC--CceeeeeeccCCC
Q 001123 439 NGLLLQWDP-NG--NRLQDFQYLPFAVQ--CLCTFG--SQIW--VGY-------MNGIVQVLDLE--GNLLGGWVAHSSP 500 (1149)
Q Consensus 439 DgtIrlWD~-tG--~~l~tl~gH~~~V~--sls~dG--~~La--SGs-------~DGtIrlWD~~--G~~l~~l~gH~~~ 500 (1149)
||||+.||- .. +.-++.+. ..+|. +..+.| .++. .|+ -+..-..|++- -+.++.|.||++.
T Consensus 223 d~tvkfw~y~kSt~e~~~~vtt-~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~ 301 (1081)
T KOG0309|consen 223 DGTVKFWDYSKSTTESKRTVTT-NFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDV 301 (1081)
T ss_pred CCceeeecccccccccceeccc-cCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchH
Confidence 999999998 22 22222221 23333 222222 2221 111 11223345532 3579999999999
Q ss_pred eEEEEe------cCC------eEEeecCCCceeeeeccC
Q 001123 501 VIKMAV------GAG------YIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 501 V~sLa~------Dg~------~LaSgS~DgtIRlWdl~s 527 (1149)
|....+ ||. .|+|=|.|.++|+|.+.+
T Consensus 302 V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 302 VLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred HHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 987541 222 589999999999998763
No 273
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.90 E-value=0.0012 Score=71.94 Aligned_cols=229 Identities=14% Similarity=0.197 Sum_probs=125.7
Q ss_pred CCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCC
Q 001123 150 ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDD 229 (1149)
Q Consensus 150 D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~ 229 (1149)
+++|..||..+|..+... . +.. +.....+.+ .++++.|+.++.++.+..||..+|.
T Consensus 2 ~g~l~~~d~~tG~~~W~~---~------------~~~---~~~~~~~~~-~~~~~~v~~~~~~~~l~~~d~~tG~----- 57 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSY---D------------LGP---GIGGPVATA-VPDGGRVYVASGDGNLYALDAKTGK----- 57 (238)
T ss_dssp TSEEEEEETTTTEEEEEE---E------------CSS---SCSSEEETE-EEETTEEEEEETTSEEEEEETTTSE-----
T ss_pred CCEEEEEECCCCCEEEEE---E------------CCC---CCCCccceE-EEeCCEEEEEcCCCEEEEEECCCCC-----
Confidence 577899999888877640 0 000 011122112 2356678888999999999998875
Q ss_pred CccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeee
Q 001123 230 GFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSI 309 (1149)
Q Consensus 230 ~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~ 309 (1149)
...+..- .+.+.......++.++.++.|+.|+.+|..+++........... .....
T Consensus 58 ---~~W~~~~-~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~------------------~~~~~-- 113 (238)
T PF13360_consen 58 ---VLWRFDL-PGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP------------------PAGVR-- 113 (238)
T ss_dssp ---EEEEEEC-SSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSC------------------TCSTB--
T ss_pred ---EEEEeec-cccccceeeecccccccccceeeeEecccCCcceeeeecccccc------------------ccccc--
Confidence 2443332 22222212344566888888999999999888765442100000 00000
Q ss_pred ecCCeEEEEEcCCCCEEEEe-cCCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCcccee
Q 001123 310 LTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSS 388 (1149)
Q Consensus 310 ~~~dv~~las~~~~~~v~Sa-sd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~s 388 (1149)
... ..... +..++.+ .++.+..+|+++|+.+......... .. ..
T Consensus 114 --~~~-~~~~~--~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~-----------~~-----------------~~-- 158 (238)
T PF13360_consen 114 --SSS-SPAVD--GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR-----------GS-----------------SP-- 158 (238)
T ss_dssp ----S-EEEEE--TTEEEEEETCSEEEEEETTTTEEEEEEESSTT------------SS---------------------
T ss_pred --ccc-CceEe--cCEEEEEeccCcEEEEecCCCcEEEEeecCCCC-----------CC-----------------cc--
Confidence 000 01111 3334433 3678999999999988876542211 00 00
Q ss_pred eeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCcEEEEeCCCe-EEEEeC-CCCeeEeeecCCccEEE-E
Q 001123 389 FGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGL-LLQWDP-NGNRLQDFQYLPFAVQC-L 465 (1149)
Q Consensus 389 i~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~laSgs~Dgt-IrlWD~-tG~~l~tl~gH~~~V~s-l 465 (1149)
+.. ...+..-....++.++.++.++. +.+ |. +|+.+-... ...+.. .
T Consensus 159 ~~~---------------------------~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~~~ 208 (238)
T PF13360_consen 159 ISS---------------------------FSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYSLP 208 (238)
T ss_dssp EEE---------------------------ETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECECE
T ss_pred eee---------------------------ecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccCCc
Confidence 000 00000111222446666777774 566 99 677553222 233444 5
Q ss_pred EecCCEEEEeecCcEEEEEeCC-Ccee
Q 001123 466 CTFGSQIWVGYMNGIVQVLDLE-GNLL 491 (1149)
Q Consensus 466 s~dG~~LaSGs~DGtIrlWD~~-G~~l 491 (1149)
..+|..|+.++.++.|..||++ |+.+
T Consensus 209 ~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 209 SVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp ECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred eeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 6789999999999999999976 7654
No 274
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.90 E-value=0.013 Score=68.36 Aligned_cols=256 Identities=9% Similarity=0.056 Sum_probs=134.9
Q ss_pred CeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EE-EEE---------CCCcEEEEeCCCcceeeecCCC
Q 001123 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGS---------EGGGIKIWPWEAIEKALSLKPE 281 (1149)
Q Consensus 213 GtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~-SGS---------~DgTIRVWdl~t~~~~~~l~~~ 281 (1149)
++|-+-|..+++ .+.++..-..+-- + +||||+ |+ +.+ .+..|.+||+++.+....+...
T Consensus 27 ~~v~ViD~~~~~--------v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p 96 (352)
T TIGR02658 27 TQVYTIDGEAGR--------VLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP 96 (352)
T ss_pred ceEEEEECCCCE--------EEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC
Confidence 889999988754 1333332222222 4 999998 54 566 6899999999987655433211
Q ss_pred cc-eeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec---CCceEEEEcCCccEEEEEecCCceeeE
Q 001123 282 ER-HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALWDARTRELLKVFNIDGQIENR 357 (1149)
Q Consensus 282 ~~-~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas---d~tIrLWD~~TG~~L~~l~~~g~~~~~ 357 (1149)
.. .... ...-..++.++++..++-+. +..+-+.|+.+++.+......+...
T Consensus 97 ~~p~~~~-----------------------~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~-- 151 (352)
T TIGR02658 97 EGPRFLV-----------------------GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH-- 151 (352)
T ss_pred CCchhhc-----------------------cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE--
Confidence 11 0000 01223456677777777554 5679999999999998775432210
Q ss_pred EeeccCCCccccccceeeEEecCCCCccceeeeeeccccc-eEeecCCcEEEEeecccccCCCCceEE-EEEcC-CCc-E
Q 001123 358 VDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRN-AIMGAADAVRRVAAKGGFGDDNRRTEA-LTTSI-DGM-I 433 (1149)
Q Consensus 358 v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~-~i~G~~d~v~rv~~~g~~~~~~~~V~a-va~s~-Dg~-l 433 (1149)
+-.++..... .+..++.. .++-..++.........|..+...+.. =.+++ ||. +
T Consensus 152 vy~t~e~~~~----------------------~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~ 209 (352)
T TIGR02658 152 IFPTANDTFF----------------------MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV 209 (352)
T ss_pred EEEecCCccE----------------------EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence 0000000000 00111111 111111111111111111110000000 02233 666 4
Q ss_pred EEEeCCCeEEEEeCCC------CeeEeeec-------CCcc--EEEEEecCCEEEEee----------cCcEEEEEeCC-
Q 001123 434 WTGGANGLLLQWDPNG------NRLQDFQY-------LPFA--VQCLCTFGSQIWVGY----------MNGIVQVLDLE- 487 (1149)
Q Consensus 434 aSgs~DgtIrlWD~tG------~~l~tl~g-------H~~~--V~sls~dG~~LaSGs----------~DGtIrlWD~~- 487 (1149)
+...+ |+|.+-|+.+ +.+..+.. .... ..++..+|++|+++. ..+.|.++|..
T Consensus 210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t 288 (352)
T TIGR02658 210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT 288 (352)
T ss_pred EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence 55444 9999999733 22222221 1122 234456799998853 22589999976
Q ss_pred Cceeeeee-ccCCCeEEEE--ecCC-eEEeec-CCCceeeeeccCC
Q 001123 488 GNLLGGWV-AHSSPVIKMA--VGAG-YIFTLA-NHGGIRGWNVTSP 528 (1149)
Q Consensus 488 G~~l~~l~-gH~~~V~sLa--~Dg~-~LaSgS-~DgtIRlWdl~sp 528 (1149)
++.+..+. |+ .+..|+ +|++ +|+... .+++|.+-|+.+.
T Consensus 289 ~kvi~~i~vG~--~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 289 GKRLRKIELGH--EIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred CeEEEEEeCCC--ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 67766554 65 455555 7999 888665 6888999998764
No 275
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.89 E-value=0.00031 Score=83.37 Aligned_cols=123 Identities=11% Similarity=0.098 Sum_probs=89.3
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEe--ecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeec
Q 001123 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW--QAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSL 278 (1149)
Q Consensus 202 dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l--~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l 278 (1149)
|-.+|+=|-..|.|-++++..|.. ...+ -+|-++|+++..+.+-. |.|++.|+.|-.|+...+......
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~i--------t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~ 140 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEI--------TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIW 140 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeE--------EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeee
Confidence 345788889999999999988752 3334 36999999998776543 899999999999998654322111
Q ss_pred CCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEecCCceeeEE
Q 001123 279 KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRV 358 (1149)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~~~g~~~~~v 358 (1149)
.. ....+..++..+++..+.+|+ ++|++||+++++.+.+|.+|+..+.++
T Consensus 141 ~~-----------------------------~~~~~~sl~is~D~~~l~~as-~~ik~~~~~~kevv~~ftgh~s~v~t~ 190 (541)
T KOG4547|consen 141 KE-----------------------------QKPLVSSLCISPDGKILLTAS-RQIKVLDIETKEVVITFTGHGSPVRTL 190 (541)
T ss_pred cc-----------------------------CCCccceEEEcCCCCEEEecc-ceEEEEEccCceEEEEecCCCcceEEE
Confidence 10 112344556667766666554 689999999999999999999887666
Q ss_pred eecc
Q 001123 359 DMSL 362 (1149)
Q Consensus 359 ~~S~ 362 (1149)
.|..
T Consensus 191 ~f~~ 194 (541)
T KOG4547|consen 191 SFTT 194 (541)
T ss_pred EEEE
Confidence 6543
No 276
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.88 E-value=0.0017 Score=78.69 Aligned_cols=51 Identities=18% Similarity=0.013 Sum_probs=35.1
Q ss_pred eEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEE-CCC--cEEEEeCCCcc
Q 001123 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGG--GIKIWPWEAIE 273 (1149)
Q Consensus 214 tIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS-~Dg--TIRVWdl~t~~ 273 (1149)
.|.++|.++.. ...+..+.+.+.+.+|||||+ |+-.+ .++ .|.+||+.+++
T Consensus 199 ~l~i~d~dG~~---------~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~ 253 (448)
T PRK04792 199 QLMIADYDGYN---------EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV 253 (448)
T ss_pred EEEEEeCCCCC---------ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC
Confidence 56677876643 344556778999999999997 65333 343 57888887654
No 277
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.83 E-value=2.2e-05 Score=60.98 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=17.8
Q ss_pred CeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEe
Q 001123 450 NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (1149)
Q Consensus 450 ~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD 485 (1149)
++++++.+|...|+++++ ++.+|++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 344555555555555543 344555555555555554
No 278
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.74 E-value=6.2e-05 Score=84.00 Aligned_cols=209 Identities=16% Similarity=0.139 Sum_probs=126.0
Q ss_pred CCccchhcc---cCCcCcccccccccccCCCCCccccCCCCccccccceeEEEEEeeCCeEEEeCCCCEEEEeCCCCCCC
Q 001123 88 SSLPEYIGK---GGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAGGENGLRVWNLKELYDE 164 (1149)
Q Consensus 88 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~p~~l~~~~~pl~e~~~~~~l~~l~~~~~~l~ag~D~tVrvWd~~~g~~~ 164 (1149)
.++|-|+|. -..+++|+.-.--.+||++-| .+|--|+-.....|.-++..++-.+-+|.+..|-+=|++||...
T Consensus 171 ~~~~cfv~ls~~~s~e~~~~~s~~~~s~pe~n~---~~~~SlQi~~a~~CawSlni~gyhfs~G~sqqv~L~nvetg~~q 247 (425)
T KOG2695|consen 171 NAMQCFVSLSPSLSNEGQFHISTYNQSLPESNN---YMLCSLQIPKAWSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQ 247 (425)
T ss_pred hhHhheeecCCCcccceEeehhhhhhccccCCC---CceeeecCCcchhhhhhhccceeeecccccceeEEEEeeccccc
Confidence 455666643 234566666666666665221 11222222333334333333333333466777888888877643
Q ss_pred CccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCE
Q 001123 165 SESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPV 244 (1149)
Q Consensus 165 ~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~V 244 (1149)
. |. . .+-|.++.|...+.+|+-|.+.|.|-+.|+..+.- .+ ..+...+ =|..+|
T Consensus 248 s------------------f~---s-ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq--G~-~~~a~rl-yh~Ssv 301 (425)
T KOG2695|consen 248 S------------------FQ---S-KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ--GN-GWCAQRL-YHDSSV 301 (425)
T ss_pred c------------------cc---c-chhHHHHHhcccCCeeEecccCCcEEEEEeeeccc--CC-CcceEEE-EcCcch
Confidence 2 11 1 56788888988889999999999999999976420 00 1112222 388999
Q ss_pred EEEEEeC-CCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCC
Q 001123 245 LSLCISS-YGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS 322 (1149)
Q Consensus 245 tsVafSp-dG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~ 322 (1149)
++|..-. +++ |++.+.+|+|++||+.-.++-......+.|+. ... -.-+...+.
T Consensus 302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN------------------~~a------~l~~~v~~e 357 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVN------------------LSA------YLPAHVKEE 357 (425)
T ss_pred hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccc------------------ccc------ccccccccc
Confidence 9998765 444 88899999999999975443222222222221 110 011123345
Q ss_pred CCEEEEecCCc-eEEEEcCCccEEEEEe
Q 001123 323 RAKVWSAGFLS-FALWDARTRELLKVFN 349 (1149)
Q Consensus 323 ~~~v~Sasd~t-IrLWD~~TG~~L~~l~ 349 (1149)
.+.|++++|+. .|+|.++.|.++.++.
T Consensus 358 eg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 358 EGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred cceEEEccCeeEEEEEecccCceeeccC
Confidence 56677777766 7999999999988765
No 279
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.74 E-value=0.0056 Score=73.76 Aligned_cols=70 Identities=11% Similarity=-0.001 Sum_probs=41.9
Q ss_pred EEEEcCCCc-EEEEeC-C--CeEEEEeC-CCCeeEeeecCCccEE--EEEecCCEEEEeec---CcEEEEEeCCCceeee
Q 001123 424 ALTTSIDGM-IWTGGA-N--GLLLQWDP-NGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYM---NGIVQVLDLEGNLLGG 493 (1149)
Q Consensus 424 ava~s~Dg~-laSgs~-D--gtIrlWD~-tG~~l~tl~gH~~~V~--sls~dG~~LaSGs~---DGtIrlWD~~G~~l~~ 493 (1149)
...++|||+ |+..+. + ..|.+||+ +|++ +.+......+. ++++||++|+..+. ...|++||+++.....
T Consensus 331 ~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 331 CPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK 409 (428)
T ss_pred ceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe-EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 455889887 554433 2 46999999 4554 44443323333 34568998875432 3578899987543333
Q ss_pred e
Q 001123 494 W 494 (1149)
Q Consensus 494 l 494 (1149)
+
T Consensus 410 L 410 (428)
T PRK01029 410 I 410 (428)
T ss_pred e
Confidence 3
No 280
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.70 E-value=0.00023 Score=78.18 Aligned_cols=100 Identities=17% Similarity=0.183 Sum_probs=80.1
Q ss_pred EcCCCc-EEEEeCCCeEEEEeCC-C--CeeEeeecCCccEEEEEec---CCEEEEeecCcEEEEEeCC--Cceeee-eec
Q 001123 427 TSIDGM-IWTGGANGLLLQWDPN-G--NRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE--GNLLGG-WVA 496 (1149)
Q Consensus 427 ~s~Dg~-laSgs~DgtIrlWD~t-G--~~l~tl~gH~~~V~sls~d---G~~LaSGs~DGtIrlWD~~--G~~l~~-l~g 496 (1149)
+++.+. ++++-.+|.+.+=+.+ + +-+++++.|.-+.+...++ ...+++|+.||.+.-||+. ++.+-. -+-
T Consensus 129 ~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kv 208 (339)
T KOG0280|consen 129 ISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKV 208 (339)
T ss_pred eeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeeccee
Confidence 555554 7788888888865553 4 3456899999988877764 5799999999999999965 555533 667
Q ss_pred cCCCeEEEE---ecCCeEEeecCCCceeeeecc
Q 001123 497 HSSPVIKMA---VGAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 497 H~~~V~sLa---~Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
|+..|.++. +.+.+|+|||+|.+||+||..
T Consensus 209 H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtR 241 (339)
T KOG0280|consen 209 HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTR 241 (339)
T ss_pred eecceEEEecCCCCCceEEEeccccceeeeehh
Confidence 999999997 588899999999999999975
No 281
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.68 E-value=0.0004 Score=81.89 Aligned_cols=130 Identities=20% Similarity=0.241 Sum_probs=88.7
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCC-----CEEEEEEeCCCc-EEEEECCCcE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG-----PVLSLCISSYGD-LWSGSEGGGI 264 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~-----~VtsVafSpdG~-L~SGS~DgTI 264 (1149)
.+.++++.+++-.++|+.|..||.|-.||........ .+........|.+ .|+++.|+-+|- ++.|..+|.|
T Consensus 175 ~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~--~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v 252 (703)
T KOG2321|consen 175 SGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVG--TLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSV 252 (703)
T ss_pred cccceeeeecCccceEEecccCceEEEecchhhhhhe--eeecccccCCCccccccCcceEEEecCCceeEEeeccCCcE
Confidence 5789999999999999999999999999987643100 0000111223433 499999999985 8999999999
Q ss_pred EEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcC--CCCEEEEecCCceEEEEcCCc
Q 001123 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH--SRAKVWSAGFLSFALWDARTR 342 (1149)
Q Consensus 265 RVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~--~~~~v~Sasd~tIrLWD~~TG 342 (1149)
-|+|+.+.++.+.- .+... -+++.+.+.+ ...+|+|.....++|||-.+|
T Consensus 253 ~iyDLRa~~pl~~k-dh~~e---------------------------~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~G 304 (703)
T KOG2321|consen 253 LIYDLRASKPLLVK-DHGYE---------------------------LPIKKLDWQDTDQQNKVVSMDKRILKIWDECTG 304 (703)
T ss_pred EEEEcccCCceeec-ccCCc---------------------------cceeeecccccCCCceEEecchHHhhhcccccC
Confidence 99999876554321 11110 1233333322 245777777778999999999
Q ss_pred cEEEEEec
Q 001123 343 ELLKVFNI 350 (1149)
Q Consensus 343 ~~L~~l~~ 350 (1149)
+......+
T Consensus 305 k~~asiEp 312 (703)
T KOG2321|consen 305 KPMASIEP 312 (703)
T ss_pred Cceeeccc
Confidence 87666543
No 282
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=97.67 E-value=0.00051 Score=77.44 Aligned_cols=70 Identities=11% Similarity=0.006 Sum_probs=39.1
Q ss_pred CcEEEEeeeccc----eeeeeeeeeccccCccceeEeeeEeecccccccCcceeEEEEEEece---EEEEeeeccccc
Q 001123 631 STFERVGSRQLA----GLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDR---IMCFVNCHFAAH 701 (1149)
Q Consensus 631 ~~y~~v~s~qL~----Gl~l~vfvr~~l~~~i~~v~~~~v~tG~~g~~gNKGaV~ir~~~~~t---~lcFVn~HLaA~ 701 (1149)
..|..+.+..++ |-...+|-|++....+..-...-..-|-. ..=..=...++|+...+ .|.+||+|+...
T Consensus 78 ~~Y~~v~s~r~gr~~~~E~~a~~Yr~drv~v~~~~~f~d~~~~~~-~~F~ReP~~~~F~~~~~~~~~F~li~~H~~p~ 154 (276)
T smart00476 78 NTYSYVSSEPLGRNSYKEQYLFLYRSDLVSVLDSYLYDDGCECGN-DVFSREPFVVKFSSPSTAVKEFVIVPLHTTPE 154 (276)
T ss_pred CCceEEecCCCCCCCCCEEEEEEEecceEEEcccceecCCCCCcc-ccccccceEEEEEeCCCCCccEEEEEecCChH
Confidence 367778877765 35667777776543332211100000000 00123356678877765 799999999875
No 283
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.67 E-value=0.032 Score=65.21 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=48.8
Q ss_pred EEEcCCCc-EEEEe----------CCCeEEEEeC-CCCeeEeeecCCccEEEE--EecCC-EEEEee-cCcEEEEEeCC-
Q 001123 425 LTTSIDGM-IWTGG----------ANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGS-QIWVGY-MNGIVQVLDLE- 487 (1149)
Q Consensus 425 va~s~Dg~-laSgs----------~DgtIrlWD~-tG~~l~tl~gH~~~V~sl--s~dG~-~LaSGs-~DGtIrlWD~~- 487 (1149)
+++++||. ++... ..+.|.++|. +++.+..+... ..+..| +.||+ +|++.. .++.|.+.|..
T Consensus 253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 67777765 54421 1247999999 78888877642 245545 56899 888777 68899999976
Q ss_pred Cceeeee
Q 001123 488 GNLLGGW 494 (1149)
Q Consensus 488 G~~l~~l 494 (1149)
++.+++.
T Consensus 332 ~k~i~~i 338 (352)
T TIGR02658 332 GKELSSV 338 (352)
T ss_pred CeEEeee
Confidence 7777765
No 284
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.66 E-value=0.039 Score=62.89 Aligned_cols=248 Identities=10% Similarity=0.136 Sum_probs=137.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCCCCCCCccceEEeecC----CCCEEEEEEeCCCc-EEEEE-CC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRD---GRIMCWKMNARLLDSDDGFGEVLSWQAH----RGPVLSLCISSYGD-LWSGS-EG 261 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~D---GtIRvWdl~~g~~~~~~~~~~~~~l~GH----~~~VtsVafSpdG~-L~SGS-~D 261 (1149)
.+.+.-|+++|+++.|.++..+ |.|-.+.++...+ .+++.++ ..+=+.|+++++|+ |++++ .-
T Consensus 39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G--------~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~ 110 (346)
T COG2706 39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDG--------RLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHS 110 (346)
T ss_pred cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCC--------eEEEeeccccCCCCCeEEEECCCCCEEEEEEccC
Confidence 4567789999999999999765 7788777764210 1223222 12337899999998 66665 56
Q ss_pred CcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecC--CceEEEEc
Q 001123 262 GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDA 339 (1149)
Q Consensus 262 gTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd--~tIrLWD~ 339 (1149)
|.|.+..++.-...........|. ..+...+. .++.+.+.-+++++..|+...- +.|.++++
T Consensus 111 g~v~v~p~~~dG~l~~~v~~~~h~------g~~p~~rQ----------~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 111 GSVSVYPLQADGSLQPVVQVVKHT------GSGPHERQ----------ESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred ceEEEEEcccCCccccceeeeecC------CCCCCccc----------cCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 899999986521111000000000 00000000 0122445566777777766542 45888887
Q ss_pred CCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCC
Q 001123 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (1149)
Q Consensus 340 ~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~ 419 (1149)
..|.+-.. ... . + ...
T Consensus 175 ~dg~L~~~----~~~--------------------~-v---------------------------------------~~G 190 (346)
T COG2706 175 DDGKLTPA----DPA--------------------E-V---------------------------------------KPG 190 (346)
T ss_pred ccCccccc----ccc--------------------c-c---------------------------------------CCC
Confidence 75543111 000 0 0 011
Q ss_pred CceEEEEEcCCCcEE--EEeCCCeEEEEeCC---C--CeeEeeec------CCccEEEE--EecCCEEEEeec-CcEEEE
Q 001123 420 RRTEALTTSIDGMIW--TGGANGLLLQWDPN---G--NRLQDFQY------LPFAVQCL--CTFGSQIWVGYM-NGIVQV 483 (1149)
Q Consensus 420 ~~V~ava~s~Dg~la--Sgs~DgtIrlWD~t---G--~~l~tl~g------H~~~V~sl--s~dG~~LaSGs~-DGtIrl 483 (1149)
.....++|+|++++| ..=-+++|-+|..+ | +++|++.. ...+..+| +.||++|++... ...|-+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 112346689999864 33348999999983 3 34444322 12233344 568999998753 236777
Q ss_pred EeCC--Cceeeee-----eccCCCeEEEEecCCeEEeecCC-Cceeeeecc
Q 001123 484 LDLE--GNLLGGW-----VAHSSPVIKMAVGAGYIFTLANH-GGIRGWNVT 526 (1149)
Q Consensus 484 WD~~--G~~l~~l-----~gH~~~V~sLa~Dg~~LaSgS~D-gtIRlWdl~ 526 (1149)
+-++ |..+... .|+.-.=..++++|++|+.+..| .+|.++...
T Consensus 271 f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 271 FSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred EEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 7654 3322221 13323334466789988877654 478888764
No 285
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.66 E-value=0.097 Score=61.23 Aligned_cols=256 Identities=12% Similarity=0.175 Sum_probs=129.5
Q ss_pred CceEEEEEcCCCCEEEEEeC----CCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEE-CCCcEE
Q 001123 192 SSVMCMVGDEASGVVWSGHR----DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGIK 265 (1149)
Q Consensus 192 ~~V~~lafs~dg~~LaSGS~----DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS-~DgTIR 265 (1149)
.....|++++++++|.+... +|.|-.|++.... ..+..+.+.......-..++++|+++ |+.+. .+|+|-
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~----g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~ 112 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT----GTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVS 112 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT----TEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc----ceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEE
Confidence 44566889999999999987 5799999987531 01122333332233455799999998 55554 699999
Q ss_pred EEeCCC-cceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec--CCceEEEEcCCc
Q 001123 266 IWPWEA-IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTR 342 (1149)
Q Consensus 266 VWdl~t-~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas--d~tIrLWD~~TG 342 (1149)
++++.. +....... .+...........+ ......++.+++++..++.+. .+.|.++++...
T Consensus 113 v~~l~~~g~l~~~~~-------~~~~~g~g~~~~rq---------~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~ 176 (345)
T PF10282_consen 113 VFPLDDDGSLGEVVQ-------TVRHEGSGPNPDRQ---------EGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDD 176 (345)
T ss_dssp EEEECTTSEEEEEEE-------EEESEEEESSTTTT---------SSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TT
T ss_pred EEEccCCcccceeee-------ecccCCCCCccccc---------ccccceeEEECCCCCEEEEEecCCCEEEEEEEeCC
Confidence 999976 22111100 00000000000000 113356778888888777653 467888888665
Q ss_pred c--EEE--EEec-CCceeeEEeeccCCCcccc-ccceeeEEecCCCCccceeeeeeccccceEeecCCc-EEEEeecccc
Q 001123 343 E--LLK--VFNI-DGQIENRVDMSLLPDFAME-DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAKGGF 415 (1149)
Q Consensus 343 ~--~L~--~l~~-~g~~~~~v~~S~~~~~~~~-~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~-v~rv~~~g~~ 415 (1149)
. +.. .+.. .+.-..-+.|++......- .+.. ..+..+.+. ..++ ...+.....+
T Consensus 177 ~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s----------~~v~v~~~~---------~~~g~~~~~~~~~~~ 237 (345)
T PF10282_consen 177 TGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS----------NTVSVFDYD---------PSDGSLTEIQTISTL 237 (345)
T ss_dssp S-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT----------TEEEEEEEE---------TTTTEEEEEEEEESC
T ss_pred CceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC----------CcEEEEeec---------ccCCceeEEEEeeec
Confidence 4 322 1211 1111112334443222210 0000 000000000 0011 1111111111
Q ss_pred c---CCCCceEEEEEcCCCc-EE-EEeCCCeEEEEeCC---CC--eeEeeecCCccEEEEE--ecCCEEEEee-cCcEEE
Q 001123 416 G---DDNRRTEALTTSIDGM-IW-TGGANGLLLQWDPN---GN--RLQDFQYLPFAVQCLC--TFGSQIWVGY-MNGIVQ 482 (1149)
Q Consensus 416 ~---~~~~~V~ava~s~Dg~-la-Sgs~DgtIrlWD~t---G~--~l~tl~gH~~~V~sls--~dG~~LaSGs-~DGtIr 482 (1149)
. ........++++|||+ |+ +.-.+++|-+++++ |+ .++.+......-..++ ++|++|+++. .+++|.
T Consensus 238 ~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~ 317 (345)
T PF10282_consen 238 PEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVS 317 (345)
T ss_dssp ETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred cccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEE
Confidence 1 1112567788999997 44 44457899999982 43 3344443333345554 5899999887 668999
Q ss_pred EEeC
Q 001123 483 VLDL 486 (1149)
Q Consensus 483 lWD~ 486 (1149)
+|++
T Consensus 318 vf~~ 321 (345)
T PF10282_consen 318 VFDI 321 (345)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
No 286
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.62 E-value=0.00015 Score=82.68 Aligned_cols=96 Identities=13% Similarity=0.107 Sum_probs=76.0
Q ss_pred EeCCCeEEEEeC-CCCeeEeeecCCccEEEEE--ecCCEEEEeecCcEEEEEeCCC-ceeeee-eccCCCeEEEEe-cCC
Q 001123 436 GGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEG-NLLGGW-VAHSSPVIKMAV-GAG 509 (1149)
Q Consensus 436 gs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls--~dG~~LaSGs~DGtIrlWD~~G-~~l~~l-~gH~~~V~sLa~-Dg~ 509 (1149)
++....+.+|.. .|.+ ..+-||-+.++.|+ .|+++|+++..|+.|||-...+ ..+.+| -||+.-|..++. +++
T Consensus 128 agD~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~ 206 (390)
T KOG3914|consen 128 AGDVYSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY 206 (390)
T ss_pred cCCceeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc
Confidence 445567888887 4555 44558999999775 5899999999999999988653 344444 489999999994 888
Q ss_pred eEEeecCCCceeeeeccCCCCCc
Q 001123 510 YIFTLANHGGIRGWNVTSPGPLD 532 (1149)
Q Consensus 510 ~LaSgS~DgtIRlWdl~sp~pld 532 (1149)
.|+|+|.|+++|+||+.+...++
T Consensus 207 ~LlS~sGD~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 207 LLLSGSGDKTLRLWDITSGKLLD 229 (390)
T ss_pred eeeecCCCCcEEEEecccCCccc
Confidence 89999999999999998866654
No 287
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=97.62 E-value=0.00096 Score=63.70 Aligned_cols=93 Identities=22% Similarity=0.378 Sum_probs=68.1
Q ss_pred CCceEeecCcEEecc-----ceeEEEEEEecCCeeeEEEEEeecCCccccCCCCCCCCCCCCCCCCCCCeEEecCceeeC
Q 001123 966 IPETIVSTNNIIIQN-----QDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIK 1040 (1149)
Q Consensus 966 ~p~~~~~~~~i~~~~-----~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wl~v~p~~g~i~ 1040 (1149)
+|.+.+++..|+|++ ...+.++|+|+|.. ++.|++... + .....+.++|..|.|.
T Consensus 1 ~P~l~v~P~~ldFG~v~~g~~~~~~v~l~N~s~~-p~~f~v~~~-----~--------------~~~~~~~v~~~~g~l~ 60 (102)
T PF14874_consen 1 VPTLEVSPKELDFGNVFVGQTYSRTVTLTNTSSI-PARFRVRQP-----E--------------SLSSFFSVEPPSGFLA 60 (102)
T ss_pred CCEEEEeCCEEEeeEEccCCEEEEEEEEEECCCC-CEEEEEEeC-----C--------------cCCCCEEEECCCCEEC
Confidence 366677777777664 56788999999998 899998631 0 0236789999999999
Q ss_pred CCCeeEEEEEEeeccchhhhhcCCCCCCcccCcCcceeEEEEEEEecccccceeeEEEee
Q 001123 1041 PDRTAEMSVHHEDFQTLEEFVDGVPQNWWCEDTRDQEVVLVLKVRGRYSTETRNHRIRVR 1100 (1149)
Q Consensus 1041 p~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~e~~Lvl~v~~~~~~~~~~h~i~v~ 1100 (1149)
||+++++.|++.-. ....+.+..|++..+|+ .-.|+|+
T Consensus 61 PG~~~~~~V~~~~~----------------~~~g~~~~~l~i~~e~~------~~~i~v~ 98 (102)
T PF14874_consen 61 PGESVELEVTFSPT----------------KPLGDYEGSLVITTEGG------SFEIPVK 98 (102)
T ss_pred CCCEEEEEEEEEeC----------------CCCceEEEEEEEEECCe------EEEEEEE
Confidence 99999999997621 11245677788888885 4556665
No 288
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.58 E-value=0.0013 Score=72.56 Aligned_cols=77 Identities=13% Similarity=0.198 Sum_probs=54.6
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCC------------CCEEEEEEeCCC-c--E
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR------------GPVLSLCISSYG-D--L 255 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~------------~~VtsVafSpdG-~--L 255 (1149)
...|.++.|+..|.+|++|...|.|.++.-+....+. .+-...|++|. ..|+.+.+-.++ + +
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ce---ykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCE---YKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccc---hhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 4578999999999999999999999999765433111 11123467773 457777766554 3 4
Q ss_pred EEEECCCcEEEEeCC
Q 001123 256 WSGSEGGGIKIWPWE 270 (1149)
Q Consensus 256 ~SGS~DgTIRVWdl~ 270 (1149)
+-...|+|||+|.+-
T Consensus 103 LlstNdktiKlWKiy 117 (460)
T COG5170 103 LLSTNDKTIKLWKIY 117 (460)
T ss_pred EEecCCceeeeeeee
Confidence 445589999999873
No 289
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=97.54 E-value=0.0026 Score=78.53 Aligned_cols=30 Identities=17% Similarity=0.369 Sum_probs=22.8
Q ss_pred EEEEeeecccccchhHHHHHHHHHHHHHhc
Q 001123 690 IMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (1149)
Q Consensus 690 ~lcFVn~HLaA~~~~~~~Rn~d~~~I~~~l 719 (1149)
.||++|.||-.+.+.-.-|..+...|++.+
T Consensus 418 ~l~VaNTHL~~~p~~~dvRl~Q~~~Ll~~l 447 (606)
T PLN03144 418 LLCVANTHIHANQELKDVKLWQVHTLLKGL 447 (606)
T ss_pred EEEEEEeeeccCCccchhHHHHHHHHHHHH
Confidence 699999999777665566777777777664
No 290
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.40 E-value=0.012 Score=71.18 Aligned_cols=78 Identities=17% Similarity=0.268 Sum_probs=62.4
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCC--------CCccceEEeecCCCCEEEEEEeCCCc-EEEEECCC
Q 001123 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSD--------DGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGG 262 (1149)
Q Consensus 192 ~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~--------~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~Dg 262 (1149)
....|++|+....+||.|+.||.+|+-.+.+..- +. ..+..-++|.||.+.|.-+.+..+.+ |-|.-.+|
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~-d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTT-DLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCC-cccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 3567999999999999999999999999877542 11 12222356899999999999998776 77777899
Q ss_pred cEEEEeCC
Q 001123 263 GIKIWPWE 270 (1149)
Q Consensus 263 TIRVWdl~ 270 (1149)
.|-||-+=
T Consensus 94 lIiVWmly 101 (1189)
T KOG2041|consen 94 LIIVWMLY 101 (1189)
T ss_pred eEEEEeee
Confidence 99999873
No 291
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.39 E-value=0.0002 Score=80.10 Aligned_cols=108 Identities=21% Similarity=0.277 Sum_probs=82.9
Q ss_pred CceEEEEEcC-CCcEEEEeCCCeEEEEeC-C-----CCeeEeeecCCccEEEE---EecCCEEEEeecCcEEEEEeCC-C
Q 001123 420 RRTEALTTSI-DGMIWTGGANGLLLQWDP-N-----GNRLQDFQYLPFAVQCL---CTFGSQIWVGYMNGIVQVLDLE-G 488 (1149)
Q Consensus 420 ~~V~ava~s~-Dg~laSgs~DgtIrlWD~-t-----G~~l~tl~gH~~~V~sl---s~dG~~LaSGs~DGtIrlWD~~-G 488 (1149)
..|-++.|.. +..+..|+.+|.|...|+ . |.|.+.| .|.++|+|+ .+++++|.+.+.+|+|++||.. .
T Consensus 253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~ 331 (425)
T KOG2695|consen 253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT 331 (425)
T ss_pred hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhh
Confidence 3455555555 445778999999999999 2 4666666 588999988 3579999999999999999965 4
Q ss_pred ce---eeeeeccCCCeEEEE----ecCCeEEeecCCCceeeeeccCC
Q 001123 489 NL---LGGWVAHSSPVIKMA----VGAGYIFTLANHGGIRGWNVTSP 528 (1149)
Q Consensus 489 ~~---l~~l~gH~~~V~sLa----~Dg~~LaSgS~DgtIRlWdl~sp 528 (1149)
++ +....||...-.-+- .....+++++.|+--|+|.+.+.
T Consensus 332 K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 332 KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred hcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence 55 889999965433322 35678999999999999998754
No 292
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.39 E-value=0.02 Score=68.96 Aligned_cols=102 Identities=12% Similarity=-0.033 Sum_probs=60.5
Q ss_pred EEEcCCCc-EEEEe-CCCeEEEEe--CC--CCeeEeeecCCccEE--EEEecCCEEEEeecC---cEEEEEeCCCceeee
Q 001123 425 LTTSIDGM-IWTGG-ANGLLLQWD--PN--GNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMN---GIVQVLDLEGNLLGG 493 (1149)
Q Consensus 425 va~s~Dg~-laSgs-~DgtIrlWD--~t--G~~l~tl~gH~~~V~--sls~dG~~LaSGs~D---GtIrlWD~~G~~l~~ 493 (1149)
..++|||. |+..+ .+|...||. +. |...+.+..+...+. .+++||++|+..+.+ ..|.+||+++.....
T Consensus 286 p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~ 365 (428)
T PRK01029 286 PSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ 365 (428)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE
Confidence 46899987 66444 467656664 42 344555555444443 456799988876543 479999987443344
Q ss_pred eeccCCCeEEE--EecCCeEE-eecC--CCceeeeecc
Q 001123 494 WVAHSSPVIKM--AVGAGYIF-TLAN--HGGIRGWNVT 526 (1149)
Q Consensus 494 l~gH~~~V~sL--a~Dg~~La-SgS~--DgtIRlWdl~ 526 (1149)
+......+... ++||++|+ ++.. +..|.+||+.
T Consensus 366 Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 366 LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 44333334444 46998876 4333 3457777764
No 293
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.38 E-value=0.061 Score=63.55 Aligned_cols=109 Identities=14% Similarity=0.149 Sum_probs=80.2
Q ss_pred CCceEEEEEcCCCc---EEEEeCCCeEEEEeCCCCeeEeeecCCccEEEEEecCCEEEEeecC---cEEEEEeCCCc--e
Q 001123 419 NRRTEALTTSIDGM---IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMN---GIVQVLDLEGN--L 490 (1149)
Q Consensus 419 ~~~V~ava~s~Dg~---laSgs~DgtIrlWD~tG~~l~tl~gH~~~V~sls~dG~~LaSGs~D---GtIrlWD~~G~--~ 490 (1149)
...|-.+.+.|++. +++|..+.++-++|+.|+....+......-..+++.+++++.++.| |.|.+||..|+ +
T Consensus 274 ~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~ 353 (561)
T COG5354 274 KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKV 353 (561)
T ss_pred cccceeeeecccCCceeEEecccccceeecccccceEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEE
Confidence 55677888988764 6688899999999998886555443222222335678999987755 79999998875 4
Q ss_pred eeeeeccCCCeEEEEecCCeEEee--c----CCCceeeeeccC
Q 001123 491 LGGWVAHSSPVIKMAVGAGYIFTL--A----NHGGIRGWNVTS 527 (1149)
Q Consensus 491 l~~l~gH~~~V~sLa~Dg~~LaSg--S----~DgtIRlWdl~s 527 (1149)
+..+.|-......-.+|++++.++ | .|+.|+|||+..
T Consensus 354 ~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 354 AGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred EEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 557777776666667899987765 2 489999999874
No 294
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.0084 Score=71.22 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=58.4
Q ss_pred ceEEEEEcCCCcE-EEEeC---CCeEEEEeC-CCCeeEeeecCCccEEEEEecCCEEEEee------cCcEEEEEeCCCc
Q 001123 421 RTEALTTSIDGMI-WTGGA---NGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGY------MNGIVQVLDLEGN 489 (1149)
Q Consensus 421 ~V~ava~s~Dg~l-aSgs~---DgtIrlWD~-tG~~l~tl~gH~~~V~sls~dG~~LaSGs------~DGtIrlWD~~G~ 489 (1149)
.=+++.++|.|.+ +-++- -|.|.+||+ +-++|..+..-...+...++||++++++. -|..|+||+.+|.
T Consensus 313 pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 313 PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred CccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 3456779999874 33333 489999999 77999999888778888899999999987 4678999999998
Q ss_pred eeee
Q 001123 490 LLGG 493 (1149)
Q Consensus 490 ~l~~ 493 (1149)
++..
T Consensus 393 ~l~~ 396 (566)
T KOG2315|consen 393 LLHE 396 (566)
T ss_pred eeeh
Confidence 7653
No 295
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.36 E-value=0.0094 Score=67.14 Aligned_cols=239 Identities=15% Similarity=0.213 Sum_probs=135.3
Q ss_pred eec-CCceEEEEEcCCCCEEEEEeCCCeEEEEECC-CCCCCCCCCccceEEeecC--CCCEEEEEEeCCCc-EEEEECCC
Q 001123 188 VKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKMN-ARLLDSDDGFGEVLSWQAH--RGPVLSLCISSYGD-LWSGSEGG 262 (1149)
Q Consensus 188 ~~G-~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~-~g~~~~~~~~~~~~~l~GH--~~~VtsVafSpdG~-L~SGS~Dg 262 (1149)
+.| ..-|+....-|-..-|+|.+.|.++|+|--. .++. -..+ -| -.+++++.+.++.. |+-|=..|
T Consensus 20 ~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~-----wpsI----~~~mP~~~~~~~y~~e~~~L~vg~~ng 90 (404)
T KOG1409|consen 20 IEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQY-----WPSI----YHYMPSPCSAMEYVSESRRLYVGQDNG 90 (404)
T ss_pred hcCchhhhhhheeccCCCCeEEccccceeeeEEecccccc-----Cchh----hhhCCCCceEeeeeccceEEEEEEecc
Confidence 335 5566666666666679999999999999643 3221 1111 14 45788999988876 67777778
Q ss_pred cEEEEeCCC-cceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEc-C
Q 001123 263 GIKIWPWEA-IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDA-R 340 (1149)
Q Consensus 263 TIRVWdl~t-~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~-~ 340 (1149)
++--..+.. ..+.... |.+ + .+...+..+.++..-..|.+.+-++-..|-. +
T Consensus 91 tvtefs~sedfnkm~~~-------------r~~--~-----------~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e 144 (404)
T KOG1409|consen 91 TVTEFALSEDFNKMTFL-------------KDY--L-----------AHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTE 144 (404)
T ss_pred eEEEEEhhhhhhhcchh-------------hhh--h-----------hhhcceeeEEecCCceeEEEeccccceEEEeec
Confidence 886665532 1111110 000 0 0113344445555555666665554445543 2
Q ss_pred CccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCC
Q 001123 341 TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR 420 (1149)
Q Consensus 341 TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~ 420 (1149)
.|..+.-+.. .........+. ... +. ..+...+..+.+.+..-.++ ..+.+|..
T Consensus 145 ~~~~lg~Y~~---------~~~~t~~~~d~--~~~-fv-Gd~~gqvt~lr~~~~~~~~i-------------~~~~~h~~ 198 (404)
T KOG1409|consen 145 SGNRLGGYNF---------ETPASALQFDA--LYA-FV-GDHSGQITMLKLEQNGCQLI-------------TTFNGHTG 198 (404)
T ss_pred cCCcccceEe---------eccCCCCceee--EEE-Ee-cccccceEEEEEeecCCceE-------------EEEcCccc
Confidence 2322221100 00000000000 000 00 01111122222222221111 13678888
Q ss_pred ceEEEEEcCCCc-EEEEeCCCeEEEEeCCC--CeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC
Q 001123 421 RTEALTTSIDGM-IWTGGANGLLLQWDPNG--NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 421 ~V~ava~s~Dg~-laSgs~DgtIrlWD~tG--~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~ 487 (1149)
.+.++.+.+... +.||+.|..|.+||+-| .....+.+|.+.|..++. --++|.|++.||.|.+||.+
T Consensus 199 ~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 199 EVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred ceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 899999877654 78999999999999944 345678899999998865 36899999999999999965
No 296
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.28 E-value=0.27 Score=54.26 Aligned_cols=85 Identities=22% Similarity=0.271 Sum_probs=54.6
Q ss_pred eEEEEEcCCCc-EE-EEeCCCeEEEEeC--CCCee---Eee---ecCCccEEEEEec--CCEEEEeecCcEEEEEeCCCc
Q 001123 422 TEALTTSIDGM-IW-TGGANGLLLQWDP--NGNRL---QDF---QYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLEGN 489 (1149)
Q Consensus 422 V~ava~s~Dg~-la-Sgs~DgtIrlWD~--tG~~l---~tl---~gH~~~V~sls~d--G~~LaSGs~DGtIrlWD~~G~ 489 (1149)
.+.+++++|+. |+ +-+..+.|..++. .+..+ +.+ .......-.++.| |...++....+.|.++|.+|+
T Consensus 136 pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~ 215 (246)
T PF08450_consen 136 PNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGK 215 (246)
T ss_dssp EEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSC
T ss_pred ccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCcc
Confidence 45678889886 54 5566788888888 23311 222 2222224456664 666555567889999999999
Q ss_pred eeeeeeccCCCeEEEEe
Q 001123 490 LLGGWVAHSSPVIKMAV 506 (1149)
Q Consensus 490 ~l~~l~gH~~~V~sLa~ 506 (1149)
++..+.--...++++++
T Consensus 216 ~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 216 LLREIELPVPRPTNCAF 232 (246)
T ss_dssp EEEEEE-SSSSEEEEEE
T ss_pred EEEEEcCCCCCEEEEEE
Confidence 88777665567888886
No 297
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.24 E-value=0.062 Score=64.65 Aligned_cols=72 Identities=8% Similarity=0.041 Sum_probs=47.5
Q ss_pred ceEEEEEcCCCCE-EEEEeCC---CeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-E-EEEECCC--cE
Q 001123 193 SVMCMVGDEASGV-VWSGHRD---GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGG--GI 264 (1149)
Q Consensus 193 ~V~~lafs~dg~~-LaSGS~D---GtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L-~SGS~Dg--TI 264 (1149)
....-.|+|||+. ++-.+.+ ..|.++|+.+|. ...+....+.+.+..|||||+ | ++.+.++ .|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~---------~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 259 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK---------KEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDI 259 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc---------EEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence 5667899999984 6654443 458888888765 333333556677788999996 4 4555554 45
Q ss_pred EEEeCCCcc
Q 001123 265 KIWPWEAIE 273 (1149)
Q Consensus 265 RVWdl~t~~ 273 (1149)
.++|+.+++
T Consensus 260 y~~dl~~g~ 268 (419)
T PRK04043 260 YLYDTNTKT 268 (419)
T ss_pred EEEECCCCc
Confidence 555765543
No 298
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=97.23 E-value=0.00075 Score=74.79 Aligned_cols=110 Identities=20% Similarity=0.319 Sum_probs=63.9
Q ss_pred EEEEEEeCCCCCCchhhcccccCCCCCcceEEEEeeccccccchhhhhhhhhhccCCCCcchhhHHHHHhcccCCCC-cE
Q 001123 555 LAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGS-TF 633 (1149)
Q Consensus 555 ~v~TWNv~~~~~~~~~l~~wl~~~~~~~Di~viGlQEi~~~~~~~~~~~~ke~~~~~~~~~~~~W~~~i~~~L~~~~-~y 633 (1149)
.+.|||||+-+.-.+.+.+||.. ..||| |+|||+-+..+.+. + ..+ ..+ |+ .|
T Consensus 2 kI~SwNVNgiRar~~~~~~~l~~--~~pDV--lclQEtK~~~~~fp----~---------------~~~-~~~--GY~~~ 55 (261)
T COG0708 2 KIASWNVNGLRARLKKLLDWLEE--EQPDV--LCLQETKAQDEQFP----R---------------EEL-EAL--GYHHV 55 (261)
T ss_pred eeEEEehhhHHHHHHHHHHHHHH--hCCCE--EEEEecccCcccCC----H---------------hHH-hhC--CceEE
Confidence 47899999877655668899985 34564 78999855332211 0 011 112 33 33
Q ss_pred EEEeeeccceeeeeeeeeccccCccceeEeeeEeecccccc-cCcceeEEEEEEeceEEEEeeecccccch
Q 001123 634 ERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAI-GNKGAVGLRVRVYDRIMCFVNCHFAAHLE 703 (1149)
Q Consensus 634 ~~v~s~qL~Gl~l~vfvr~~l~~~i~~v~~~~v~tG~~g~~-gNKGaV~ir~~~~~t~lcFVn~HLaA~~~ 703 (1149)
..-+.+.--|+ +++.|.... .|..|+++.- -..=+=.|...+.+ +.++|.-+++++.
T Consensus 56 ~~~gqKgysGV--ailsr~~~~---------~v~~g~~~~~~~d~e~R~I~a~~~~--~~v~~~Y~PnG~~ 113 (261)
T COG0708 56 FNHGQKGYSGV--AILSKKPPD---------DVRRGFPGEEEDDEEGRVIEAEFDG--FRVINLYFPNGSS 113 (261)
T ss_pred EecCcCCcceE--EEEEccCch---------hhhcCCCCCccccccCcEEEEEECC--EEEEEEEcCCCCC
Confidence 33333444455 445555443 4567877631 11113345555555 8899999999987
No 299
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.16 E-value=0.091 Score=62.48 Aligned_cols=96 Identities=21% Similarity=0.206 Sum_probs=64.7
Q ss_pred CCcEEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEecCCEEEEeecCcEEEEEeCC-CceeeeeeccCCC-eEEEEe
Q 001123 430 DGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSP-VIKMAV 506 (1149)
Q Consensus 430 Dg~laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~-V~sLa~ 506 (1149)
++.++.++.+|.+.-.|. +|+.+=...- .....+..+|.+|+.++.+|.|..+|.+ |+.+-....-... ..+.+.
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v 333 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL 333 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE
Confidence 667888888999999999 7876533221 1222345678899999999999999975 7654322111111 222333
Q ss_pred cCCeEEeecCCCceeeeeccC
Q 001123 507 GAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 507 Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
.+.+|+.++.||.+...|..+
T Consensus 334 ~~g~l~v~~~~G~l~~ld~~t 354 (394)
T PRK11138 334 YNGYLVVGDSEGYLHWINRED 354 (394)
T ss_pred ECCEEEEEeCCCEEEEEECCC
Confidence 566788889999999888665
No 300
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.13 E-value=0.0071 Score=68.00 Aligned_cols=105 Identities=12% Similarity=0.096 Sum_probs=68.0
Q ss_pred eEEEEEcCCC--cEEEEeCCCeEEEEeCC--CCee---EeeecCC------------ccEEEEEe--cCCEEEEeecCcE
Q 001123 422 TEALTTSIDG--MIWTGGANGLLLQWDPN--GNRL---QDFQYLP------------FAVQCLCT--FGSQIWVGYMNGI 480 (1149)
Q Consensus 422 V~ava~s~Dg--~laSgs~DgtIrlWD~t--G~~l---~tl~gH~------------~~V~sls~--dG~~LaSGs~DGt 480 (1149)
|++.-|+|.. .++-.|+.|+|||-|+. .-|. ..+.-.. ..|..+.+ +|++|++-+. -+
T Consensus 216 ITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-lt 294 (433)
T KOG1354|consen 216 ITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LT 294 (433)
T ss_pred HhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ce
Confidence 4455577764 35667788999999994 2222 1111111 12334433 6999998754 48
Q ss_pred EEEEeCC--CceeeeeeccC------------CCeEE---EEe--cCCeEEeecCCCceeeeeccC
Q 001123 481 VQVLDLE--GNLLGGWVAHS------------SPVIK---MAV--GAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 481 IrlWD~~--G~~l~~l~gH~------------~~V~s---La~--Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
|+|||+. .+++.+..-|. +.|.. +.+ ++.+++|||..+..|++++..
T Consensus 295 vk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 295 VKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred eEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCC
Confidence 9999974 77888777773 23322 223 456999999999999999653
No 301
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.12 E-value=0.63 Score=54.82 Aligned_cols=110 Identities=13% Similarity=0.096 Sum_probs=78.0
Q ss_pred CCCCceEEEEEcCCCc-EEEEeCCC-eEEEEeCCCCeeEeeecCCccEEEEE--ecCCEEEEeecCcEEEEEeCC-Ccee
Q 001123 417 DDNRRTEALTTSIDGM-IWTGGANG-LLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLL 491 (1149)
Q Consensus 417 ~~~~~V~ava~s~Dg~-laSgs~Dg-tIrlWD~tG~~l~tl~gH~~~V~sls--~dG~~LaSGs~DGtIrlWD~~-G~~l 491 (1149)
++...|.-..+.-++. ++.|..|| .+-++|..|.....+...-+.|.++. .+|+++++|-.-..|.+.|++ |+..
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~ 436 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR 436 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee
Confidence 4444555555555544 77888888 89999997666677777777888774 589999999988889999987 7654
Q ss_pred eeeeccCCCeEEEE--ecCCeEEeecC----CCceeeeecc
Q 001123 492 GGWVAHSSPVIKMA--VGAGYIFTLAN----HGGIRGWNVT 526 (1149)
Q Consensus 492 ~~l~gH~~~V~sLa--~Dg~~LaSgS~----DgtIRlWdl~ 526 (1149)
-.=+...+-|+... ++++++|=+=- -..||++|+.
T Consensus 437 ~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~ 477 (668)
T COG4946 437 LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD 477 (668)
T ss_pred EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC
Confidence 44445566777776 57788875433 3467777754
No 302
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.12 E-value=0.0046 Score=68.99 Aligned_cols=114 Identities=12% Similarity=0.073 Sum_probs=92.5
Q ss_pred ccccCCCCceEEEEEcCCC-cEEEEeCCCeEEEEeC-CC---CeeEeeecCCccEEEEE--ecCCEEEEeecCcEEEEEe
Q 001123 413 GGFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDP-NG---NRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLD 485 (1149)
Q Consensus 413 g~~~~~~~~V~ava~s~Dg-~laSgs~DgtIrlWD~-tG---~~l~tl~gH~~~V~sls--~dG~~LaSGs~DGtIrlWD 485 (1149)
.++..|...|..|-++|.. +|++++.|..-.+|.. .| +..-.|..|+.+.+++. +.+..+|+||....|.||-
T Consensus 49 htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy 128 (361)
T KOG1523|consen 49 HTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCY 128 (361)
T ss_pred eehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEE
Confidence 4688899999999999986 6999999999999998 54 34445566888999994 5689999999999999999
Q ss_pred CCCce-----eeeeeccCCCeEEEE--ecCCeEEeecCCCceeeeecc
Q 001123 486 LEGNL-----LGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 486 ~~G~~-----l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
.+++. -+.-+-|.+.|.++. +.+-+|+.||.|+.+|+....
T Consensus 129 ~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSay 176 (361)
T KOG1523|consen 129 YEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAY 176 (361)
T ss_pred EecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEe
Confidence 87542 123345778899998 466788899999999999764
No 303
>PTZ00297 pantothenate kinase; Provisional
Probab=97.12 E-value=0.01 Score=80.53 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=30.3
Q ss_pred ccCcceeEEEEEEe----c-eEEEEeeecccccchhHHHHHHHHHHHHH
Q 001123 674 IGNKGAVGLRVRVY----D-RIMCFVNCHFAAHLEAVNRRNADFDHVYR 717 (1149)
Q Consensus 674 ~gNKGaV~ir~~~~----~-t~lcFVn~HLaA~~~~~~~Rn~d~~~I~~ 717 (1149)
..+||.+-+.+.+- + ..+-|+|.||.+.... ..|.++..+|.+
T Consensus 130 ~~~RG~L~a~I~vp~~~g~~~~v~v~~tHL~~~~~~-~~R~~Q~~ql~~ 177 (1452)
T PTZ00297 130 SVRRGCLFAEVEVPLAEGGSQRIVFFNVHLRQEDSL-PSTSSQVQETRR 177 (1452)
T ss_pred ccccceEEEEEEccccCCCCceEEEEEeCCCCCCCc-chHHHHHHHHHH
Confidence 35899999999884 2 5799999999988543 224455555543
No 304
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.07 E-value=0.91 Score=52.17 Aligned_cols=115 Identities=13% Similarity=0.150 Sum_probs=72.4
Q ss_pred eEEEEEcCCCCEEEEEeC-CCeEEEEECCC-CCCCCCCCccceEEeecCCCC----------EEEEEEeCCCc-EEEEE-
Q 001123 194 VMCMVGDEASGVVWSGHR-DGRIMCWKMNA-RLLDSDDGFGEVLSWQAHRGP----------VLSLCISSYGD-LWSGS- 259 (1149)
Q Consensus 194 V~~lafs~dg~~LaSGS~-DGtIRvWdl~~-g~~~~~~~~~~~~~l~GH~~~----------VtsVafSpdG~-L~SGS- 259 (1149)
-+-+++|++|+.|+++.+ -|.|.+.-+.. |.. ........|.++ +.+..|+|+++ |++..
T Consensus 91 p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l------~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL 164 (346)
T COG2706 91 PCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSL------QPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL 164 (346)
T ss_pred CeEEEECCCCCEEEEEEccCceEEEEEcccCCcc------ccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec
Confidence 367999999999999985 47899998854 321 223234457666 88999999997 66554
Q ss_pred -CCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec--CCceEE
Q 001123 260 -EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFAL 336 (1149)
Q Consensus 260 -~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas--d~tIrL 336 (1149)
.| .|.+++++.+.. .+.... . + .+..--+.+++.+++..++... +.+|-+
T Consensus 165 G~D-ri~~y~~~dg~L----~~~~~~---~--------v-----------~~G~GPRHi~FHpn~k~aY~v~EL~stV~v 217 (346)
T COG2706 165 GTD-RIFLYDLDDGKL----TPADPA---E--------V-----------KPGAGPRHIVFHPNGKYAYLVNELNSTVDV 217 (346)
T ss_pred CCc-eEEEEEcccCcc----cccccc---c--------c-----------CCCCCcceEEEcCCCcEEEEEeccCCEEEE
Confidence 45 488999874431 110000 0 0 1122345566666666555443 578889
Q ss_pred EEcCC
Q 001123 337 WDART 341 (1149)
Q Consensus 337 WD~~T 341 (1149)
|....
T Consensus 218 ~~y~~ 222 (346)
T COG2706 218 LEYNP 222 (346)
T ss_pred EEEcC
Confidence 98765
No 305
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.99 E-value=1 Score=52.63 Aligned_cols=269 Identities=17% Similarity=0.204 Sum_probs=139.4
Q ss_pred EEEEeCC----CeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEEC----CCcEEEEeCCCcceee
Q 001123 206 VWSGHRD----GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSE----GGGIKIWPWEAIEKAL 276 (1149)
Q Consensus 206 LaSGS~D----GtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~----DgTIRVWdl~t~~~~~ 276 (1149)
++-|++. +.|.+|+++.... .+....... -...-.-|+++|+++ |++..+ ++.|-.|.+......+
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g----~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L 76 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETG----TLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTL 76 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTT----EEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCC----CceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCccee
Confidence 3445555 6888888833220 112222221 233455688999987 777665 5788888875421111
Q ss_pred ecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec--CCceEEEEcCC-ccEEEEE---ec
Q 001123 277 SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDART-RELLKVF---NI 350 (1149)
Q Consensus 277 ~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas--d~tIrLWD~~T-G~~L~~l---~~ 350 (1149)
.. +. ... ........++.++++..|+.+. ++++.++++.. |.+.... ..
T Consensus 77 ~~------~~-------------~~~------~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~ 131 (345)
T PF10282_consen 77 TL------LN-------------SVP------SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRH 131 (345)
T ss_dssp EE------EE-------------EEE------ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEES
T ss_pred EE------ee-------------eec------cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeeccc
Confidence 10 00 000 0112234567778888887764 57899999876 4443321 11
Q ss_pred CCceeeEEeeccCCCccccccceeeEEecCCCC-ccceeeeeeccccceEeec--CCcEEEEeec---ccc-------cC
Q 001123 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKD-KAQSSFGFFQRSRNAIMGA--ADAVRRVAAK---GGF-------GD 417 (1149)
Q Consensus 351 ~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~-~~~~si~f~~~~~~~i~G~--~d~v~rv~~~---g~~-------~~ 417 (1149)
.+. .+.. .++. ...-.+.|.|+++.+++.. .|.+...... +.+ ..
T Consensus 132 ~g~-------g~~~---------------~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~ 189 (345)
T PF10282_consen 132 EGS-------GPNP---------------DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVP 189 (345)
T ss_dssp EEE-------ESST---------------TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECS
T ss_pred CCC-------CCcc---------------cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccc
Confidence 000 0000 0000 0111345556655554432 2223222210 011 12
Q ss_pred CCCceEEEEEcCCCc-EE-EEeCCCeEEEEeCC---C--CeeEeeecC------CccEEE--EEecCCEEEEee-cCcEE
Q 001123 418 DNRRTEALTTSIDGM-IW-TGGANGLLLQWDPN---G--NRLQDFQYL------PFAVQC--LCTFGSQIWVGY-MNGIV 481 (1149)
Q Consensus 418 ~~~~V~ava~s~Dg~-la-Sgs~DgtIrlWD~t---G--~~l~tl~gH------~~~V~s--ls~dG~~LaSGs-~DGtI 481 (1149)
.......++|+|||. ++ +.-.+++|.++++. | +.++++... ...... +++||++|+++. ...+|
T Consensus 190 ~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 190 PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 233456788999987 44 44457899999883 3 233333221 112333 456899998876 46789
Q ss_pred EEEeCC---Cce--eeeeeccCCCeEEEE--ecCCeEEeec-CCCceeeeecc
Q 001123 482 QVLDLE---GNL--LGGWVAHSSPVIKMA--VGAGYIFTLA-NHGGIRGWNVT 526 (1149)
Q Consensus 482 rlWD~~---G~~--l~~l~gH~~~V~sLa--~Dg~~LaSgS-~DgtIRlWdl~ 526 (1149)
-+++++ |++ +..+...-..-..++ ++|++|+.+. .+++|.+|++.
T Consensus 270 ~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 270 SVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 999983 443 333332223355665 5999988765 67799999874
No 306
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.96 E-value=0.004 Score=75.39 Aligned_cols=109 Identities=15% Similarity=0.142 Sum_probs=75.2
Q ss_pred CCCCceEEEEEcCCC--cEEEEeCCCeEEEEeCCC--CeeEeeecCCccEEEEEe---cCCEEEEeecCcEEEEEeCC--
Q 001123 417 DDNRRTEALTTSIDG--MIWTGGANGLLLQWDPNG--NRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE-- 487 (1149)
Q Consensus 417 ~~~~~V~ava~s~Dg--~laSgs~DgtIrlWD~tG--~~l~tl~gH~~~V~sls~---dG~~LaSGs~DGtIrlWD~~-- 487 (1149)
+|...+..+.+.+.. .+++++.|-.|..||+.. ..+..+..-...-..+.. ++..+|+ +....|++||+.
T Consensus 112 ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~g 190 (1081)
T KOG0309|consen 112 GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKG 190 (1081)
T ss_pred cCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh-ccCCceEEEeccCC
Confidence 344444444454432 378999999999999943 444444332222233332 4555554 567789999975
Q ss_pred CceeeeeeccCCCeEEEEe---cCCeEEeecCCCceeeeecc
Q 001123 488 GNLLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 488 G~~l~~l~gH~~~V~sLa~---Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
+.++..+++|...|+++++ --..+.+.+.|+||+.||-.
T Consensus 191 s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~ 232 (1081)
T KOG0309|consen 191 STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS 232 (1081)
T ss_pred CcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence 5789999999999999884 34578899999999999965
No 307
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=96.94 E-value=0.032 Score=61.97 Aligned_cols=111 Identities=17% Similarity=0.160 Sum_probs=75.0
Q ss_pred cccCCCCceEEEEEcCC--CcEEEEeCCCeEEEEeCC--CCeeEe-eecCCccEEEEEe---cCCEEEEeecCcEEEEEe
Q 001123 414 GFGDDNRRTEALTTSID--GMIWTGGANGLLLQWDPN--GNRLQD-FQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLD 485 (1149)
Q Consensus 414 ~~~~~~~~V~ava~s~D--g~laSgs~DgtIrlWD~t--G~~l~t-l~gH~~~V~sls~---dG~~LaSGs~DGtIrlWD 485 (1149)
....|.-......|+.. ..+++|+.|+.+.-||+. ++++-. -+-|...|.||.. .+.+|++|++|.+|++||
T Consensus 160 ~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~D 239 (339)
T KOG0280|consen 160 TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLD 239 (339)
T ss_pred cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeee
Confidence 34455555555566543 346899999999999993 566643 6678889999953 578999999999999999
Q ss_pred CC--CceeeeeeccCCCeEEEEe---cCCeEEeecCCCceeeeec
Q 001123 486 LE--GNLLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 486 ~~--G~~l~~l~gH~~~V~sLa~---Dg~~LaSgS~DgtIRlWdl 525 (1149)
.. |+++..-. -.+.|+.+.. ....|+.+.-.+..++=+.
T Consensus 240 tRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~ 283 (339)
T KOG0280|consen 240 TRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDS 283 (339)
T ss_pred hhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEe
Confidence 65 77765322 1277888763 2223333444555555554
No 308
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.70 E-value=0.0033 Score=45.70 Aligned_cols=36 Identities=39% Similarity=0.661 Sum_probs=31.8
Q ss_pred ceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEe
Q 001123 233 EVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (1149)
Q Consensus 233 ~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWd 268 (1149)
....+.+|...|+++.|.+++. +++|+.|++|++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3567789999999999999876 78999999999996
No 309
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=96.68 E-value=1.1 Score=59.09 Aligned_cols=68 Identities=10% Similarity=0.046 Sum_probs=50.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEE----ECCCCCCCCCCCccceEEeecC-CCCEEEEEEeCCCc-EEEEECCCcE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCW----KMNARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYGD-LWSGSEGGGI 264 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvW----dl~~g~~~~~~~~~~~~~l~GH-~~~VtsVafSpdG~-L~SGS~DgTI 264 (1149)
.+.|.++.+-++...|.-+..+|.|.+. +..+.. ....|- .++|.+++||||+. |+-...++++
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~----------~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l 144 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE----------IEIVGSVDSGILAASWSPDEELLALVTGEGNL 144 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce----------eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEE
Confidence 4678999999999999999999999999 544422 223344 56899999999998 4445556777
Q ss_pred EEEe
Q 001123 265 KIWP 268 (1149)
Q Consensus 265 RVWd 268 (1149)
-+-+
T Consensus 145 ~~mt 148 (928)
T PF04762_consen 145 LLMT 148 (928)
T ss_pred EEEe
Confidence 6643
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.57 E-value=0.45 Score=54.34 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=38.6
Q ss_pred CCceEEEEEcCCCc-EE-EEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEec-CCEEEEeecC
Q 001123 419 NRRTEALTTSIDGM-IW-TGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF-GSQIWVGYMN 478 (1149)
Q Consensus 419 ~~~V~ava~s~Dg~-la-Sgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~d-G~~LaSGs~D 478 (1149)
...+.+|+++.+|. ++ |+=.-+.+-+||. +|+++....- ..+..++.. +.+++|.+.-
T Consensus 216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~f~~ssG~G 277 (305)
T PF07433_consen 216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDGFLVSSGQG 277 (305)
T ss_pred CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCceEEeCCCc
Confidence 35678899999986 43 3334678999999 7888776543 345666553 4466665544
No 311
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.56 E-value=0.083 Score=64.96 Aligned_cols=110 Identities=17% Similarity=0.129 Sum_probs=74.3
Q ss_pred CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCC------------CCEEEE
Q 001123 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA------------SGVVWS 208 (1149)
Q Consensus 142 ~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~d------------g~~LaS 208 (1149)
...|+| |+...|-|=|.-+.+.+.+ . ..| ...|+.+.|.|. .-+||+
T Consensus 25 ~~GLiAygshslV~VVDs~s~q~iqs------------------i-e~h-~s~V~~VrWap~~~p~~llS~~~~~lliAs 84 (1062)
T KOG1912|consen 25 PSGLIAYGSHSLVSVVDSRSLQLIQS------------------I-ELH-QSAVTSVRWAPAPSPRDLLSPSSSQLLIAS 84 (1062)
T ss_pred ccceEEEecCceEEEEehhhhhhhhc------------------c-ccC-ccceeEEEeccCCCchhccCccccceeEEe
Confidence 455665 6677788888665554432 0 123 455666666542 237899
Q ss_pred EeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCC---Cc--EEEEECCCcEEEEeCCCcceeeecC
Q 001123 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY---GD--LWSGSEGGGIKIWPWEAIEKALSLK 279 (1149)
Q Consensus 209 GS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpd---G~--L~SGS~DgTIRVWdl~t~~~~~~l~ 279 (1149)
|...|.|.+||...+. .+..++-|..+|..|++-+. ++ |+.=..-.+|-+|+..+|++.....
T Consensus 85 aD~~GrIil~d~~~~s--------~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ 152 (1062)
T KOG1912|consen 85 ADISGRIILVDFVLAS--------VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD 152 (1062)
T ss_pred ccccCcEEEEEehhhh--------hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc
Confidence 9999999999998754 24446678899999998753 33 4443344799999999998765543
No 312
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.51 E-value=0.32 Score=58.16 Aligned_cols=70 Identities=20% Similarity=0.247 Sum_probs=50.3
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEEC-----------CC
Q 001123 195 MCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSE-----------GG 262 (1149)
Q Consensus 195 ~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~-----------Dg 262 (1149)
+-+.|||-|.+|+|=+.-| |.+|--. .+..++.| .|.+ |.-+.|||.-+ |+|=|. ..
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~--------~f~r~~RF-~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~ 282 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGE--------SFDRIQRF-YHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ 282 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCc--------cHHHHHhc-cCCC-ceeeecCCccceEEEecCCccccCcccCCCc
Confidence 4578999999999999988 6699422 23334444 3654 77799999876 776442 25
Q ss_pred cEEEEeCCCccee
Q 001123 263 GIKIWPWEAIEKA 275 (1149)
Q Consensus 263 TIRVWdl~t~~~~ 275 (1149)
.++|||+.||...
T Consensus 283 ~l~IWDI~tG~lk 295 (698)
T KOG2314|consen 283 QLIIWDIATGLLK 295 (698)
T ss_pred eEEEEEccccchh
Confidence 8999999987643
No 313
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=96.43 E-value=0.027 Score=61.50 Aligned_cols=71 Identities=14% Similarity=0.176 Sum_probs=53.7
Q ss_pred eEEEEEcCCC--cEEEEeCCCeEEEEeC-CC-CeeEeeecCCccEEEEEe---cCCEEEEeecCcEEEEEeCCCceee
Q 001123 422 TEALTTSIDG--MIWTGGANGLLLQWDP-NG-NRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLEGNLLG 492 (1149)
Q Consensus 422 V~ava~s~Dg--~laSgs~DgtIrlWD~-tG-~~l~tl~gH~~~V~sls~---dG~~LaSGs~DGtIrlWD~~G~~l~ 492 (1149)
|.++...|.. .++.|+.||.+-+||. +. .....+..|..+|+-+-| ++..|.+++.||.+.-||..++.+.
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~ 259 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLS 259 (319)
T ss_pred chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEE
Confidence 4444444443 3678889999999999 54 455677889999998866 5789999999999999997765543
No 314
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.37 E-value=1.2 Score=52.72 Aligned_cols=77 Identities=12% Similarity=0.044 Sum_probs=60.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCC-eEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEe
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDG-RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DG-tIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWd 268 (1149)
.+.|.-..+..++.-++-|-.|| .+-++|.+++. ...+.+.-+.|.+|..+++|+ ++.+-.-..|-+.|
T Consensus 359 ~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e---------~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vid 429 (668)
T COG4946 359 KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE---------VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVID 429 (668)
T ss_pred CCceEEEEEccCCcceEEeccCCceEEEEecCCce---------EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEE
Confidence 44577777777777888999999 89999999865 566778889999999999999 55555556777778
Q ss_pred CCCcceee
Q 001123 269 WEAIEKAL 276 (1149)
Q Consensus 269 l~t~~~~~ 276 (1149)
++++....
T Consensus 430 idngnv~~ 437 (668)
T COG4946 430 IDNGNVRL 437 (668)
T ss_pred ecCCCeeE
Confidence 88876443
No 315
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.18 Score=58.18 Aligned_cols=74 Identities=14% Similarity=0.150 Sum_probs=63.5
Q ss_pred CCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc--EEEEECCCcEEEE
Q 001123 191 VSSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIW 267 (1149)
Q Consensus 191 ~~~V~~lafs~dg~-~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~--L~SGS~DgTIRVW 267 (1149)
+..|..++|||... +|..++.+.+|++-|+++..+ ..++..| ..+++++|.-|.. |+.|-..|.|-++
T Consensus 193 g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~--------vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 193 GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV--------VSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred chhhhhhccCccccceeeeeccCceEEEEeccccee--------eeheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence 66789999999865 899999999999999998653 5667778 8999999998865 8899999999999
Q ss_pred eCCCcc
Q 001123 268 PWEAIE 273 (1149)
Q Consensus 268 dl~t~~ 273 (1149)
|+...+
T Consensus 264 D~R~~~ 269 (463)
T KOG1645|consen 264 DMRQPE 269 (463)
T ss_pred EccCCC
Confidence 997633
No 316
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.15 E-value=1.1 Score=54.15 Aligned_cols=98 Identities=11% Similarity=-0.022 Sum_probs=53.4
Q ss_pred EcCCCc-EEEEe-CCC--eEEEEeCC-CCeeEeeecCCccEEEEEecCCEEEEeecC---------cEEEEEeCCCceee
Q 001123 427 TSIDGM-IWTGG-ANG--LLLQWDPN-GNRLQDFQYLPFAVQCLCTFGSQIWVGYMN---------GIVQVLDLEGNLLG 492 (1149)
Q Consensus 427 ~s~Dg~-laSgs-~Dg--tIrlWD~t-G~~l~tl~gH~~~V~sls~dG~~LaSGs~D---------GtIrlWD~~G~~l~ 492 (1149)
++|||+ |+-.+ ..+ .|.+.|++ |+..+..... .....+++||++|+-.+.. ..|.+.|+++...+
T Consensus 284 ~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g-~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~ 362 (419)
T PRK04043 284 FVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG-KNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR 362 (419)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-CcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE
Confidence 778775 54333 233 57777884 5443322211 1223678899988766543 36888898744334
Q ss_pred eeeccC-CCeEEEEecCCeEEeecC-CCceeeeec
Q 001123 493 GWVAHS-SPVIKMAVGAGYIFTLAN-HGGIRGWNV 525 (1149)
Q Consensus 493 ~l~gH~-~~V~sLa~Dg~~LaSgS~-DgtIRlWdl 525 (1149)
.+..+. ..--+.++||+.|+-.+. .+.-.+|-+
T Consensus 363 ~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~ 397 (419)
T PRK04043 363 RLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGII 397 (419)
T ss_pred ECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEE
Confidence 444331 122345689987764443 334445544
No 317
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.09 E-value=0.023 Score=68.40 Aligned_cols=71 Identities=17% Similarity=0.218 Sum_probs=59.2
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
.+.|.|++++|+...|+-|..||.|++||...+. ..+.-+.=..+.++++|+|. ++.||.-|.+.+||+
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~----------t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV----------TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCCCe----------eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 4689999999999999999999999999987643 22333445678899999998 678999999999998
Q ss_pred CC
Q 001123 270 EA 271 (1149)
Q Consensus 270 ~t 271 (1149)
.-
T Consensus 329 AL 330 (545)
T PF11768_consen 329 AL 330 (545)
T ss_pred ec
Confidence 64
No 318
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=96.08 E-value=0.02 Score=62.62 Aligned_cols=39 Identities=21% Similarity=0.378 Sum_probs=33.5
Q ss_pred EEEEEEeceEEEEeeecccccchhHHHHHHHHHHHHHhc
Q 001123 681 GLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (1149)
Q Consensus 681 ~ir~~~~~t~lcFVn~HLaA~~~~~~~Rn~d~~~I~~~l 719 (1149)
.+...|.+..+||.|+||.+-.+.--+|.++|...++++
T Consensus 196 I~Ev~v~G~Kl~l~tsHLEStr~h~P~r~~qF~~~~~k~ 234 (349)
T KOG2756|consen 196 IVEVNVSGNKLCLMTSHLESTRGHAPERMNQFKMVLKKM 234 (349)
T ss_pred EEEEeecCceEEEEeccccCCCCCChHHHHHHHHHHHHH
Confidence 445567788999999999999998899999999888875
No 319
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=96.01 E-value=0.14 Score=57.46 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=25.4
Q ss_pred cCcceeEEEEEEeceEEEEeeecccccchhHHHHHHHHHHHHHh
Q 001123 675 GNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRT 718 (1149)
Q Consensus 675 gNKGaV~ir~~~~~t~lcFVn~HLaA~~~~~~~Rn~d~~~I~~~ 718 (1149)
..+..+++++. + +.|.|.||.|..+ ..|-+..+.|...
T Consensus 140 ~~Rpilgi~i~--~--~~ffstH~~a~~~--~da~aiV~~I~~~ 177 (271)
T PRK15251 140 ASRPIIGIRIG--N--DVFFSIHALANGG--TDAGAIVRAVHNF 177 (271)
T ss_pred cccceEEEEec--C--eEEEEeeecCCCC--ccHHHHHHHHHHH
Confidence 36778888763 3 7899999999832 2255666555554
No 320
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=95.88 E-value=0.041 Score=52.93 Aligned_cols=64 Identities=25% Similarity=0.445 Sum_probs=46.6
Q ss_pred eEeecC-cEEecc----ceeEEEEEEecCCeeeEEEEEeecCCccccCCCCCCCCCCCCCCCCCCCeEEecCceeeCCCC
Q 001123 969 TIVSTN-NIIIQN----QDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIKPDR 1043 (1149)
Q Consensus 969 ~~~~~~-~i~~~~----~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wl~v~p~~g~i~p~~ 1043 (1149)
+.|++. .|.|.. .....|+|+|.+.. +..|.|-|. .+.-+.|.|..|+|.||+
T Consensus 2 l~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~-~i~fKiktt---------------------~~~~y~v~P~~G~i~p~~ 59 (109)
T PF00635_consen 2 LSVEPSELIFFNAPFNKQQSCELTLTNPSDK-PIAFKIKTT---------------------NPNRYRVKPSYGIIEPGE 59 (109)
T ss_dssp CEEESSSEEEEESSTSS-EEEEEEEEE-SSS-EEEEEEEES----------------------TTTEEEESSEEEE-TTE
T ss_pred eEEeCCcceEEcCCCCceEEEEEEEECCCCC-cEEEEEEcC---------------------CCceEEecCCCEEECCCC
Confidence 345555 445543 25678999999997 889999862 246789999999999999
Q ss_pred eeEEEEEEeec
Q 001123 1044 TAEMSVHHEDF 1054 (1149)
Q Consensus 1044 ~~~i~~~~~~~ 1054 (1149)
+++|.|+....
T Consensus 60 ~~~i~I~~~~~ 70 (109)
T PF00635_consen 60 SVEITITFQPF 70 (109)
T ss_dssp EEEEEEEE-SS
T ss_pred EEEEEEEEEec
Confidence 99999987543
No 321
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=95.85 E-value=1.2 Score=53.07 Aligned_cols=70 Identities=17% Similarity=0.140 Sum_probs=53.1
Q ss_pred EEEEEcCCCc-EEEEeCC---CeEEEEeCCC--CeeEeeecCCccEEEEEecCCEEEEee------cCcEEEEEeCCCce
Q 001123 423 EALTTSIDGM-IWTGGAN---GLLLQWDPNG--NRLQDFQYLPFAVQCLCTFGSQIWVGY------MNGIVQVLDLEGNL 490 (1149)
Q Consensus 423 ~ava~s~Dg~-laSgs~D---gtIrlWD~tG--~~l~tl~gH~~~V~sls~dG~~LaSGs------~DGtIrlWD~~G~~ 490 (1149)
..+.|+|.+. ++.++-| |.|.+||..| .++..+.+-+......++||+++.+.. .|..|.|||+.|..
T Consensus 319 NT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 319 NTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred ccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 3466888876 5565554 7899999966 566788887777777788999888775 57789999998765
Q ss_pred ee
Q 001123 491 LG 492 (1149)
Q Consensus 491 l~ 492 (1149)
..
T Consensus 399 ~f 400 (561)
T COG5354 399 VF 400 (561)
T ss_pred hh
Confidence 43
No 322
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=95.80 E-value=0.0067 Score=66.07 Aligned_cols=72 Identities=21% Similarity=0.347 Sum_probs=60.6
Q ss_pred ceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCC--cEEEEECCCcEEEEeC
Q 001123 193 SVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG--DLWSGSEGGGIKIWPW 269 (1149)
Q Consensus 193 ~V~~lafs~d-g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG--~L~SGS~DgTIRVWdl 269 (1149)
.|.+++-.|. ..+++.|+.||.|-+||+.... .+...+++|+.+|+-|-|.|.. +|+++|+||.+.-||.
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wda 253 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDA 253 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEccccc-------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcC
Confidence 4888888875 6789999999999999998754 2344578999999999999864 3999999999999998
Q ss_pred CC
Q 001123 270 EA 271 (1149)
Q Consensus 270 ~t 271 (1149)
.+
T Consensus 254 s~ 255 (319)
T KOG4714|consen 254 ST 255 (319)
T ss_pred CC
Confidence 64
No 323
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=95.80 E-value=0.019 Score=65.20 Aligned_cols=63 Identities=21% Similarity=0.200 Sum_probs=42.3
Q ss_pred EeeeccceeeeeeeeeccccCccceeEe-----eeEeecccccccCcceeEEEEEEeceEEEEeeeccccc
Q 001123 636 VGSRQLAGLLIAVWVRKNLKDYVGDVDV-----AAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAH 701 (1149)
Q Consensus 636 v~s~qL~Gl~l~vfvr~~l~~~i~~v~~-----~~v~tG~~g~~gNKGaV~ir~~~~~t~lcFVn~HLaA~ 701 (1149)
..|.-| |--|+||-|-.+....-+.-. ..+--| --.|-||---.++.+.+..+.+-|.||-|-
T Consensus 73 FHSGim-GaGL~vfSK~PI~~t~~~~y~lNG~p~~i~rG--DWf~GK~Vgl~~l~~~g~~v~~yntHLHAe 140 (422)
T KOG3873|consen 73 FHSGIM-GAGLCVFSKHPILETLFHRYSLNGYPHAIHRG--DWFGGKGVGLTVLLVGGRMVNLYNTHLHAE 140 (422)
T ss_pred hhcccc-cCceEEeecCchhhhhhhccccCCccceeeec--cccccceeEEEEEeeCCEEeeeeehhcccc
Confidence 455555 888999999877543222111 111112 235778877788889999999999999886
No 324
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=95.79 E-value=2.4 Score=48.20 Aligned_cols=290 Identities=12% Similarity=0.092 Sum_probs=147.5
Q ss_pred CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeee-cCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCCC
Q 001123 149 GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK-GVSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLD 226 (1149)
Q Consensus 149 ~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~-G~~~V~~lafs~dg-~~LaSGS~DGtIRvWdl~~g~~~ 226 (1149)
-|+-|++|++....=- -++. |..++.++.+|||| .+|-+...|-.|.+|++.+..+
T Consensus 69 k~~~vqvwsl~Qpew~---------------------ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~- 126 (447)
T KOG4497|consen 69 KDPKVQVWSLVQPEWY---------------------CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG- 126 (447)
T ss_pred ccceEEEEEeecceeE---------------------EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee-
Confidence 3778999998632211 0111 35667789999999 6677888999999999988542
Q ss_pred CCCCccceEEeecCCCCEEEEEEeCCCcEE-EEEC-CC-------cEEEEeC------CCcc-eeeecCCCcceeeEEEe
Q 001123 227 SDDGFGEVLSWQAHRGPVLSLCISSYGDLW-SGSE-GG-------GIKIWPW------EAIE-KALSLKPEERHTAALIV 290 (1149)
Q Consensus 227 ~~~~~~~~~~l~GH~~~VtsVafSpdG~L~-SGS~-Dg-------TIRVWdl------~t~~-~~~~l~~~~~~~~a~~~ 290 (1149)
.-++--+..+..++|.|||+.+ -++. |- .-+-|-+ .|.. ..+.-.+++..++..
T Consensus 127 --------~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVw-- 196 (447)
T KOG4497|consen 127 --------YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVW-- 196 (447)
T ss_pred --------EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEe--
Confidence 2222225567899999999843 3332 21 0122221 1100 001112222222211
Q ss_pred eeccccccccccccce-eeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEec----CC---ce-------
Q 001123 291 ERSYIDLRSHLSVNGF-SSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNI----DG---QI------- 354 (1149)
Q Consensus 291 ~~~~~~l~~~~~~~g~-~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~----~g---~~------- 354 (1149)
.+..+ ..+ ..-.+-.++.+..++.+..++-++ |+-+|+-+--|-+....|-. +. ..
T Consensus 197 -d~~Le-------ykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~ 268 (447)
T KOG4497|consen 197 -DNVLE-------YKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFS 268 (447)
T ss_pred -cchhh-------heeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcc
Confidence 00000 000 001123467778888777776665 44566544333222221110 00 00
Q ss_pred -----eeEEeeccCC-Cc--------cccc---cceeeEEe--cCC--CCccceeeeeeccccceEeecCC--cEEEEee
Q 001123 355 -----ENRVDMSLLP-DF--------AMED---EFKTKIVT--SSK--KDKAQSSFGFFQRSRNAIMGAAD--AVRRVAA 411 (1149)
Q Consensus 355 -----~~~v~~S~~~-~~--------~~~~---~~~~~~~s--~~~--k~~~~~si~f~~~~~~~i~G~~d--~v~rv~~ 411 (1149)
...+.+.+.. +. ..+. .++..... +.. ....++-++|+.++..+++.... .+.-+|+
T Consensus 269 ~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wd 348 (447)
T KOG4497|consen 269 IVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWD 348 (447)
T ss_pred hhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEe
Confidence 0011222211 00 0010 01111122 111 12344567889888877776543 3444455
Q ss_pred cccc-----cCCCCceEEEEEcCCC-cEEEEeCCCeEEEEeCCCC-eeEeeecCCccEEEEEe--cCCEEEEeecCc
Q 001123 412 KGGF-----GDDNRRTEALTTSIDG-MIWTGGANGLLLQWDPNGN-RLQDFQYLPFAVQCLCT--FGSQIWVGYMNG 479 (1149)
Q Consensus 412 ~g~~-----~~~~~~V~ava~s~Dg-~laSgs~DgtIrlWD~tG~-~l~tl~gH~~~V~sls~--dG~~LaSGs~DG 479 (1149)
...+ ......|.+..+.|.. .++.+.....+.+|...|- +++. .+..-.|..+.. +|..|+-.+.|.
T Consensus 349 lq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 349 LQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred chhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCc
Confidence 3322 2334577888888874 4665555556999999883 3333 222356777765 688888877774
No 325
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.53 E-value=0.031 Score=40.33 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=19.6
Q ss_pred CeeEeeecCCccEEEEEec--CCEEEEeecCcEEEEEe
Q 001123 450 NRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLD 485 (1149)
Q Consensus 450 ~~l~tl~gH~~~V~sls~d--G~~LaSGs~DGtIrlWD 485 (1149)
+++..+..|...|+++.+. +.++++|+.|+.|++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3445555555555555442 45556666666666654
No 326
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=95.53 E-value=1 Score=50.39 Aligned_cols=72 Identities=11% Similarity=0.104 Sum_probs=46.6
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecC-CCCEEEEEEeCCC-------cEEEEECCCcEEE
Q 001123 195 MCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYG-------DLWSGSEGGGIKI 266 (1149)
Q Consensus 195 ~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH-~~~VtsVafSpdG-------~L~SGS~DgTIRV 266 (1149)
.-|+||||+.+||.+..-|+|+++|+.+..+-..++ ...+.|- ..+|-+|.|-+.- +|+.-.-+|.+|-
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p---~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPP---AMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCc---ccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 358999999999999999999999998744311111 1112222 4678888887643 2444455565655
Q ss_pred EeC
Q 001123 267 WPW 269 (1149)
Q Consensus 267 Wdl 269 (1149)
+-+
T Consensus 124 y~v 126 (282)
T PF15492_consen 124 YLV 126 (282)
T ss_pred EEE
Confidence 544
No 327
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=95.46 E-value=0.35 Score=53.33 Aligned_cols=103 Identities=8% Similarity=-0.068 Sum_probs=72.6
Q ss_pred CeEEEeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001123 143 EQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (1149)
Q Consensus 143 ~~l~ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~ 221 (1149)
..++++.|.|+|+.+++-+..... +|- .-.++.+++|+|++++++-+.-..|-.+.++
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~---------------------~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id 188 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFA---------------------VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAID 188 (344)
T ss_pred ceeeccCCcceeEEEEecCcccce---------------------eeccccceeeeEEcCCCceEEEecCCCcceEEEeC
Confidence 344567799999999874332211 231 1237899999999999999999999999987
Q ss_pred CCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCC
Q 001123 222 ARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (1149)
Q Consensus 222 ~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t 271 (1149)
... ..-+-.....-++.=.+..|+.... +|.++.||++.|||+..
T Consensus 189 ~~s-----ey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~ 234 (344)
T KOG4532|consen 189 DES-----EYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRN 234 (344)
T ss_pred Ccc-----ceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecc
Confidence 532 1111112333456667888988765 78999999999999975
No 328
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.33 E-value=0.034 Score=60.09 Aligned_cols=96 Identities=15% Similarity=0.193 Sum_probs=68.9
Q ss_pred cEEEEeCCCeEEEEeCC--CCeeEeeecCCccEEEEEe---cCCEEEEeecCcEEEEEeCC-CceeeeeeccC-CCeEEE
Q 001123 432 MIWTGGANGLLLQWDPN--GNRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS-SPVIKM 504 (1149)
Q Consensus 432 ~laSgs~DgtIrlWD~t--G~~l~tl~gH~~~V~sls~---dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~-~~V~sL 504 (1149)
.++.|+.||.|.+|..+ |........-...|-++.+ ++.+.++|+.||.||.|++. ++.+..--.|+ .++..+
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ 151 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL 151 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence 58889999999999884 4443333333445666655 35689999999999999987 77766666777 455444
Q ss_pred E--ecCCeEEee--cCCCceeeeeccC
Q 001123 505 A--VGAGYIFTL--ANHGGIRGWNVTS 527 (1149)
Q Consensus 505 a--~Dg~~LaSg--S~DgtIRlWdl~s 527 (1149)
. ..++.|+++ |.|..++.|++..
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchhh
Confidence 3 356677777 8888888888753
No 329
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.29 E-value=0.83 Score=57.42 Aligned_cols=80 Identities=11% Similarity=0.127 Sum_probs=52.8
Q ss_pred ceEEEEEcCCCcE-EEEeCCCeEEEEeCCCCe--eEeeecCCccEEEEEe-cCCE-EEEeecCcEEEEEeCCC-ceeeee
Q 001123 421 RTEALTTSIDGMI-WTGGANGLLLQWDPNGNR--LQDFQYLPFAVQCLCT-FGSQ-IWVGYMNGIVQVLDLEG-NLLGGW 494 (1149)
Q Consensus 421 ~V~ava~s~Dg~l-aSgs~DgtIrlWD~tG~~--l~tl~gH~~~V~sls~-dG~~-LaSGs~DGtIrlWD~~G-~~l~~l 494 (1149)
.|+.+++..|++. +-+..-..|.++.++|+- +..+..|...++|.++ +++. +++|+. .-+.++|..| +++..|
T Consensus 173 pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 173 PITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAF 251 (933)
T ss_pred CceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeee
Confidence 4556666666652 333344579999997755 6668888889999887 4544 555543 4599999875 355666
Q ss_pred e-ccCCCe
Q 001123 495 V-AHSSPV 501 (1149)
Q Consensus 495 ~-gH~~~V 501 (1149)
. ||....
T Consensus 252 ~~g~kk~~ 259 (933)
T KOG2114|consen 252 EVGEKKEM 259 (933)
T ss_pred cCCCeEEE
Confidence 6 776543
No 330
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.09 E-value=5 Score=49.91 Aligned_cols=114 Identities=20% Similarity=0.205 Sum_probs=82.1
Q ss_pred eEEEEEeeCCeEEEeC-CCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCC
Q 001123 134 FLRTIVCTEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (1149)
Q Consensus 134 ~l~~l~~~~~~l~ag~-D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~D 212 (1149)
.++.+..+.+.+.-|. -|.|.+++-.+++.... .+.+ +.+.+..+.++++..++|-|+..
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~------------------~~~~-~~~~~~~~~vs~~e~lvAagt~~ 97 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL------------------KNEG-ATGITCVRSVSSVEYLVAAGTAS 97 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhhhcc------------------cccC-ccceEEEEEecchhHhhhhhcCC
Confidence 5666666677776554 66699999877665432 0101 15566677889999999999999
Q ss_pred CeEEEEECCCCCCCCCCCccceE--Ee-ecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCC
Q 001123 213 GRIMCWKMNARLLDSDDGFGEVL--SW-QAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (1149)
Q Consensus 213 GtIRvWdl~~g~~~~~~~~~~~~--~l-~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t 271 (1149)
|.|-+.-+..+. +..... .+ +-|...|++++|++|+. ++||-.-|+|-+-.+++
T Consensus 98 g~V~v~ql~~~~-----p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 98 GRVSVFQLNKEL-----PRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceEEeehhhccC-----CCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 999998887633 111111 11 34788999999999996 99999999999888876
No 331
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=94.96 E-value=6 Score=44.49 Aligned_cols=75 Identities=19% Similarity=0.069 Sum_probs=48.3
Q ss_pred EEEeCCCcEEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeee---ecCCeEEEEEcCCC
Q 001123 247 LCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSI---LTSDIKNLLSDHSR 323 (1149)
Q Consensus 247 VafSpdG~L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~---~~~dv~~las~~~~ 323 (1149)
++.+++|+|+..=.|.+|-|=.....- .++.+.|.+ +..+-+-+++++++
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf---------------------------~si~~kcqVpkD~~PQWRkl~WSpD~ 55 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDF---------------------------SSIIGKCQVPKDPNPQWRKLAWSPDC 55 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCc---------------------------hheeEEEecCCCCCchheEEEECCCC
Confidence 677888998888888888775543211 011111222 23567788999999
Q ss_pred CEEEEec-CCceEEEEcCCccEEEEEe
Q 001123 324 AKVWSAG-FLSFALWDARTRELLKVFN 349 (1149)
Q Consensus 324 ~~v~Sas-d~tIrLWD~~TG~~L~~l~ 349 (1149)
..++.+. .++|+++|+.. ..+.++.
T Consensus 56 tlLa~a~S~G~i~vfdl~g-~~lf~I~ 81 (282)
T PF15492_consen 56 TLLAYAESTGTIRVFDLMG-SELFVIP 81 (282)
T ss_pred cEEEEEcCCCeEEEEeccc-ceeEEcC
Confidence 8887664 57899999875 4444443
No 332
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=94.93 E-value=7.4 Score=42.87 Aligned_cols=55 Identities=20% Similarity=0.426 Sum_probs=39.5
Q ss_pred eEEEEEcCCCcEEEEe-CCCeEEEEeCCCCeeEeeecCCccEEEEEe---cCCEEEEee
Q 001123 422 TEALTTSIDGMIWTGG-ANGLLLQWDPNGNRLQDFQYLPFAVQCLCT---FGSQIWVGY 476 (1149)
Q Consensus 422 V~ava~s~Dg~laSgs-~DgtIrlWD~tG~~l~tl~gH~~~V~sls~---dG~~LaSGs 476 (1149)
...+++..+|.|+++. ..+.|.++|.+|+.+..+.-....++++++ +.+.|+..+
T Consensus 186 pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 186 PDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred CCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 4456678888887654 578999999999999888776568888887 445665543
No 333
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.28 Score=57.43 Aligned_cols=75 Identities=24% Similarity=0.307 Sum_probs=55.5
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcE-EEEEC-CCcEEEEe
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSE-GGGIKIWP 268 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L-~SGS~-DgTIRVWd 268 (1149)
...|.-+... -...+.+||.||.+|.|....-. ...-+..+..|.+.|.+++.|-+|.| .|++. |..+|+.|
T Consensus 9 rd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~is-----GvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 9 RDVITHVFPT-KAKFIIQASLDGHKKFWKKSRIS-----GVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFD 82 (558)
T ss_pred cceeeeEeee-hhheEEeeecchhhhhcCCCCcc-----ceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEE
Confidence 3344444433 34689999999999999864311 11224457889999999999999985 68888 99999999
Q ss_pred CCC
Q 001123 269 WEA 271 (1149)
Q Consensus 269 l~t 271 (1149)
++.
T Consensus 83 vEn 85 (558)
T KOG0882|consen 83 VEN 85 (558)
T ss_pred eec
Confidence 875
No 334
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=94.64 E-value=0.11 Score=65.02 Aligned_cols=96 Identities=16% Similarity=0.187 Sum_probs=78.6
Q ss_pred cEEEEeCCCeEEEEeCC-CCeeEeeecCCccEEEEEecCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEEEEecCC
Q 001123 432 MIWTGGANGLLLQWDPN-GNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGAG 509 (1149)
Q Consensus 432 ~laSgs~DgtIrlWD~t-G~~l~tl~gH~~~V~sls~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa~Dg~ 509 (1149)
.++-|+-...+.-.|++ ++..++..-....|.-+..+++.+.+|...|+|-|-|.+ -+.++++.+|++.|..+...|+
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GN 228 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGN 228 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCC
Confidence 35555555667788994 555566555555688888899999999999999999976 6889999999999999999999
Q ss_pred eEEeec---------CCCceeeeeccC
Q 001123 510 YIFTLA---------NHGGIRGWNVTS 527 (1149)
Q Consensus 510 ~LaSgS---------~DgtIRlWdl~s 527 (1149)
.|+|+| .|..|+|||+..
T Consensus 229 lLitCG~S~R~~~l~~D~FvkVYDLRm 255 (1118)
T KOG1275|consen 229 LLITCGYSMRRYNLAMDPFVKVYDLRM 255 (1118)
T ss_pred eEEEeecccccccccccchhhhhhhhh
Confidence 999986 388899999964
No 335
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.53 E-value=15 Score=45.26 Aligned_cols=94 Identities=19% Similarity=0.220 Sum_probs=56.6
Q ss_pred EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEecCCEEEEe------------------ecCcEEEEEeCC-Cceee
Q 001123 433 IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVG------------------YMNGIVQVLDLE-GNLLG 492 (1149)
Q Consensus 433 laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~dG~~LaSG------------------s~DGtIrlWD~~-G~~l~ 492 (1149)
++.++.+|.+.-.|. +|+.+=..... ...++.+..+++.+ ..+|.|.-.|+. |+.+-
T Consensus 304 V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W 380 (488)
T cd00216 304 IVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVW 380 (488)
T ss_pred EEEECCCceEEEEECCCCcEeeEeEee---ccccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEee
Confidence 667888999999999 89876443211 00112222333332 246778888864 76543
Q ss_pred eeecc--C------CCe--EEEEecCCeEEeecCCCceeeeeccCCC
Q 001123 493 GWVAH--S------SPV--IKMAVGAGYIFTLANHGGIRGWNVTSPG 529 (1149)
Q Consensus 493 ~l~gH--~------~~V--~sLa~Dg~~LaSgS~DgtIRlWdl~sp~ 529 (1149)
....- . .+. ..++..+..|+.++.|+.++..|..+..
T Consensus 381 ~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~ 427 (488)
T cd00216 381 EKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGK 427 (488)
T ss_pred EeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCc
Confidence 33221 1 111 2345677889999999999999877643
No 336
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.25 E-value=6 Score=45.43 Aligned_cols=96 Identities=21% Similarity=0.195 Sum_probs=58.5
Q ss_pred CCCceEEEEEcCCCcEEEEeCCC--------eEEEEeCCCCeeEeeec-------CCccEEEEEe--cCCEEEEee-cCc
Q 001123 418 DNRRTEALTTSIDGMIWTGGANG--------LLLQWDPNGNRLQDFQY-------LPFAVQCLCT--FGSQIWVGY-MNG 479 (1149)
Q Consensus 418 ~~~~V~ava~s~Dg~laSgs~Dg--------tIrlWD~tG~~l~tl~g-------H~~~V~sls~--dG~~LaSGs-~DG 479 (1149)
|...+.-+++.++|.++.|.... -|-+++..+ .++.+.. -.+-|-||++ +|.++++.| ..+
T Consensus 161 ~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~-~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg 239 (305)
T PF07433_consen 161 HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG-ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG 239 (305)
T ss_pred cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC-cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence 55578888999999888776521 244444422 1222221 1234667776 567776655 678
Q ss_pred EEEEEeCC-CceeeeeeccCCCeEEEEe-cCCeEEeecC
Q 001123 480 IVQVLDLE-GNLLGGWVAHSSPVIKMAV-GAGYIFTLAN 516 (1149)
Q Consensus 480 tIrlWD~~-G~~l~~l~gH~~~V~sLa~-Dg~~LaSgS~ 516 (1149)
.+.+||.+ |+++....- ..+..|++ ++.+++|.+.
T Consensus 240 ~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~f~~ssG~ 276 (305)
T PF07433_consen 240 RVAVWDAATGRLLGSVPL--PDACGVAPTDDGFLVSSGQ 276 (305)
T ss_pred EEEEEECCCCCEeecccc--CceeeeeecCCceEEeCCC
Confidence 99999965 887765432 34666774 4446766544
No 337
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=93.76 E-value=13 Score=43.09 Aligned_cols=57 Identities=14% Similarity=0.364 Sum_probs=39.6
Q ss_pred eEEEEEcCCCcEEEEe-CCC-eEEEEeCCCCeeEeeecCCccEEEEEecC---CEEEEeecC
Q 001123 422 TEALTTSIDGMIWTGG-ANG-LLLQWDPNGNRLQDFQYLPFAVQCLCTFG---SQIWVGYMN 478 (1149)
Q Consensus 422 V~ava~s~Dg~laSgs-~Dg-tIrlWD~tG~~l~tl~gH~~~V~sls~dG---~~LaSGs~D 478 (1149)
...++...+|.+|++. .+| .|..|+.+|+.++.+.-....+.++++-| +.|+..+..
T Consensus 215 PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 215 PDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred CCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence 3445566778888444 443 89999999999998887767777777754 666555433
No 338
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=93.72 E-value=1.9 Score=42.09 Aligned_cols=90 Identities=19% Similarity=0.183 Sum_probs=60.2
Q ss_pred EcCCCc--EEEEeCCCeEEEEeCCCCeeEeeecCCccEEEEEe-cCCEEEEeecCcEEEEEeCCCceeeeeeccCCCeEE
Q 001123 427 TSIDGM--IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIK 503 (1149)
Q Consensus 427 ~s~Dg~--laSgs~DgtIrlWD~tG~~l~tl~gH~~~V~sls~-dG~~LaSGs~DGtIrlWD~~G~~l~~l~gH~~~V~s 503 (1149)
+..||. |+.||.|..||+|+-+ +++..+.- ++.|.++.. .+.+++-|-..|||-+++-..++=+.-..| .+++
T Consensus 10 ~d~dg~~eLlvGs~D~~IRvf~~~-e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~RlWRiKSK~--~~~~ 85 (111)
T PF14783_consen 10 FDGDGENELLVGSDDFEIRVFKGD-EIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQRLWRIKSKN--QVTS 85 (111)
T ss_pred cCCCCcceEEEecCCcEEEEEeCC-cEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCcceeeeeccCC--CeEE
Confidence 344543 9999999999999864 56666654 467888865 568999999999999999643321211222 3677
Q ss_pred EE-e----cC-CeEEeecCCCce
Q 001123 504 MA-V----GA-GYIFTLANHGGI 520 (1149)
Q Consensus 504 La-~----Dg-~~LaSgS~DgtI 520 (1149)
++ . || .-|++|=.+|.|
T Consensus 86 ~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 86 MAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred EEEEcCCCCCceEEEEEecCCeE
Confidence 76 2 22 246676666655
No 339
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.51 E-value=0.53 Score=58.68 Aligned_cols=93 Identities=11% Similarity=0.215 Sum_probs=71.8
Q ss_pred cEEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEec-------CCEEEEeecCcEEEEEeCC--Cceee-eeeccCCC
Q 001123 432 MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF-------GSQIWVGYMNGIVQVLDLE--GNLLG-GWVAHSSP 500 (1149)
Q Consensus 432 ~laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~d-------G~~LaSGs~DGtIrlWD~~--G~~l~-~l~gH~~~ 500 (1149)
.++|||.||+|.|-.+ +++...++.-+ .++.+|+.+ .+++++|+.-| +.+.... |+... .+..-.|+
T Consensus 85 y~asCS~DGkv~I~sl~~~~~~~~~df~-rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~ 162 (846)
T KOG2066|consen 85 YVASCSDDGKVVIGSLFTDDEITQYDFK-RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGP 162 (846)
T ss_pred eEEEecCCCcEEEeeccCCccceeEecC-CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccc
Confidence 4999999999999999 77665555443 578877653 47999999999 8888855 44333 35556789
Q ss_pred eEEEEecCCeEEeecCCCceeeeeccC
Q 001123 501 VIKMAVGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 501 V~sLa~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
|.++.+-|++||=++.+ .||++|+.+
T Consensus 163 I~~i~W~g~lIAWand~-Gv~vyd~~~ 188 (846)
T KOG2066|consen 163 IHSIKWRGNLIAWANDD-GVKVYDTPT 188 (846)
T ss_pred eEEEEecCcEEEEecCC-CcEEEeccc
Confidence 99999999999987655 589999875
No 340
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=93.49 E-value=0.25 Score=55.25 Aligned_cols=140 Identities=16% Similarity=0.169 Sum_probs=84.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecC-----CCCEEEEEEeCCCc--EEEEECCCc
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH-----RGPVLSLCISSYGD--LWSGSEGGG 263 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH-----~~~VtsVafSpdG~--L~SGS~DgT 263 (1149)
.-.++++.|+.|...+.| +.|=.|-+|+++--. ..|. +...+-| +.-|++.-|+|.-. +.=.|.-|+
T Consensus 172 ~yhiNSiS~NsD~et~lS-aDdLrINLWnl~i~D----~sFn-IVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~ 245 (460)
T COG5170 172 PYHINSISFNSDKETLLS-ADDLRINLWNLEIID----GSFN-IVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE 245 (460)
T ss_pred eeEeeeeeecCchheeee-ccceeeeeccccccC----CceE-EEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc
Confidence 445789999999988887 467789999986422 1111 2333455 46789999999753 333445799
Q ss_pred EEEEeCCCcceeeecC---CCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcC
Q 001123 264 IKIWPWEAIEKALSLK---PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDAR 340 (1149)
Q Consensus 264 IRVWdl~t~~~~~~l~---~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~ 340 (1149)
|++=|+.... ++.. ..+.. ++...+....+.. ..+..+-+++++..+.+-...|++|||++
T Consensus 246 Ikl~DlRq~a--lcdn~~klfe~~----------~D~v~~~ff~eiv----sSISD~kFs~ngryIlsRdyltvkiwDvn 309 (460)
T COG5170 246 IKLNDLRQSA--LCDNSKKLFELT----------IDGVDVDFFEEIV----SSISDFKFSDNGRYILSRDYLTVKIWDVN 309 (460)
T ss_pred EEehhhhhhh--hccCchhhhhhc----------cCcccchhHHHHh----hhhcceEEcCCCcEEEEeccceEEEEecc
Confidence 9999996411 1110 00000 1111111111111 22334557788888888888999999997
Q ss_pred C-ccEEEEEecCC
Q 001123 341 T-RELLKVFNIDG 352 (1149)
Q Consensus 341 T-G~~L~~l~~~g 352 (1149)
- ..++++...|.
T Consensus 310 m~k~pikTi~~h~ 322 (460)
T COG5170 310 MAKNPIKTIPMHC 322 (460)
T ss_pred cccCCceeechHH
Confidence 5 45777765544
No 341
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=93.28 E-value=0.14 Score=60.98 Aligned_cols=144 Identities=17% Similarity=0.220 Sum_probs=80.5
Q ss_pred eEEEEEEEEeCCCCCC----------chhhcccccCC--------CCCcceEEEEeeccccccchhhhhhhhhhccCCCC
Q 001123 552 LKILAGTWNVGQGRAS----------QDALISWLGSA--------ASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGS 613 (1149)
Q Consensus 552 ~~i~v~TWNv~~~~~~----------~~~l~~wl~~~--------~~~~Di~viGlQEi~~~~~~~~~~~~ke~~~~~~~ 613 (1149)
+++.|+||||=+..-- ....-.|.... .-+|| |++||||+..-
T Consensus 115 f~ftvmSYNILAQ~l~~~~~r~~~~~s~~~L~W~~R~~~Ll~EL~~~dpD--IlCLQEVq~d~----------------- 175 (495)
T KOG2338|consen 115 FDFTVMSYNILAQDLLRDIRRLYFPESGPALKWLRRSQNLLNELKHYDPD--VLCLQEVQEDH----------------- 175 (495)
T ss_pred cceEEEEehHhHHHHHHHhHHhhccCChhhcchhHHhHHHHHHHhhcCCC--eeeehhhhhhh-----------------
Confidence 6999999999754321 11223455321 12466 47899997421
Q ss_pred cchhhHHHHHhcccCCCCcEEEEe-eeccceeeeeeeeeccccCccce--eEeeeEeecccccccCcceeEEEEEEece-
Q 001123 614 AVGHWWLDMIGKILDDGSTFERVG-SRQLAGLLIAVWVRKNLKDYVGD--VDVAAVPCGFGRAIGNKGAVGLRVRVYDR- 689 (1149)
Q Consensus 614 ~~~~~W~~~i~~~L~~~~~y~~v~-s~qL~Gl~l~vfvr~~l~~~i~~--v~~~~v~tG~~g~~gNKGaV~ir~~~~~t- 689 (1149)
-...|...++. |+-...|.+-. .+. =.++++-++.+-..+-+ |.-.-...|+...-.=++-|.++|++-+.
T Consensus 176 -~~~~~~~~~~~-lGy~~~~~r~t~~Kt---hG~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f~~~~~~ 250 (495)
T KOG2338|consen 176 -YPEFWQPLLGK-LGYTGFFKRRTGTKT---HGVAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLEFRLVDES 250 (495)
T ss_pred -hHHHHHHHHhh-cCceEEEEeccCCCC---ceEEEEEecccceecccchhhcccccchhhcccceeEEEEEEecccCcc
Confidence 01236655554 43222222111 111 12444555553333322 22223345554432225567777776665
Q ss_pred --EEEEeeecccccchhHHHHHHHHHHHHHhc
Q 001123 690 --IMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (1149)
Q Consensus 690 --~lcFVn~HLaA~~~~~~~Rn~d~~~I~~~l 719 (1149)
-++..|.||-=|......|-++...|++.+
T Consensus 251 sq~ilVanTHLl~np~~~~vrL~Q~~iiL~~~ 282 (495)
T KOG2338|consen 251 SQGILVANTHLLFNPSRSDVRLAQVYIILAEL 282 (495)
T ss_pred cCceEEEeeeeeecCcccchhhHHHHHHHHHH
Confidence 899999999999887788889998898875
No 342
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=93.10 E-value=3.9 Score=49.83 Aligned_cols=124 Identities=20% Similarity=0.412 Sum_probs=74.4
Q ss_pred cCCCCCccccCCCCccccccceeEEEEEee-CCeEEEeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec
Q 001123 112 HPARPPSLEVKPHPLRETQIGCFLRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG 190 (1149)
Q Consensus 112 ~~~~p~~l~~~~~pl~e~~~~~~l~~l~~~-~~~l~ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G 190 (1149)
++.+=..+++.++|+.+ .+.+++.+ ..+||.|.|.+|.+-+.+. ..... ..++..
T Consensus 190 d~~~gkalql~s~~~dk-----~I~al~~d~qg~LWVGTdqGv~~~e~~G-~~~sn--------------~~~~lp---- 245 (671)
T COG3292 190 DAGRGKALQLASPPLDK-----AINALIADVQGRLWVGTDQGVYLQEAEG-WRASN--------------WGPMLP---- 245 (671)
T ss_pred ccccceEEEcCCCcchh-----hHHHHHHHhcCcEEEEeccceEEEchhh-ccccc--------------cCCCCc----
Confidence 44444456666666654 22233333 6999999999999988663 21111 111211
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEee-cC-CCCEEEEEEeCCCcEEEEECCCcEEEEe
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-AH-RGPVLSLCISSYGDLWSGSEGGGIKIWP 268 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~-GH-~~~VtsVafSpdG~L~SGS~DgTIRVWd 268 (1149)
.+.|+.+.-|.+| .+|-|+..|..|.=-...+. . ....+ .| -..|+++....+|.||.++.++.+++=+
T Consensus 246 ~~~I~ll~qD~qG-~lWiGTenGl~r~~l~rq~L-------q-~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~ 316 (671)
T COG3292 246 SGNILLLVQDAQG-ELWIGTENGLWRTRLPRQGL-------Q-IPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLT 316 (671)
T ss_pred chheeeeecccCC-CEEEeecccceeEecCCCCc-------c-ccccccCCccccccceeeccCCCEeeeccCceEEEec
Confidence 3456666655555 57888888876654333322 1 11112 22 3578888888999999999998776643
No 343
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.83 E-value=19 Score=40.19 Aligned_cols=79 Identities=16% Similarity=0.178 Sum_probs=48.2
Q ss_pred CccccccceeEEEEEee-CCeEEEe-CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEE-EEEcC
Q 001123 125 PLRETQIGCFLRTIVCT-EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMC-MVGDE 201 (1149)
Q Consensus 125 pl~e~~~~~~l~~l~~~-~~~l~ag-~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~-lafs~ 201 (1149)
..||+..|-.+..-++- ++++..| ..+.+.+-++++|..... |.. -..|.+ ...++
T Consensus 45 ~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~-----------------f~~----~~~vk~~a~~d~ 103 (354)
T KOG4649|consen 45 LIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWN-----------------FVI----LETVKVRAQCDF 103 (354)
T ss_pred EEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheee-----------------eee----hhhhccceEEcC
Confidence 45665555444322222 5555554 366688888877754432 110 112222 34578
Q ss_pred CCCEEEEEeCCCeEEEEECCCCC
Q 001123 202 ASGVVWSGHRDGRIMCWKMNARL 224 (1149)
Q Consensus 202 dg~~LaSGS~DGtIRvWdl~~g~ 224 (1149)
++++|+.|+.|++...-|..+..
T Consensus 104 ~~glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 104 DGGLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred CCceEEEecCCCcEEEecccccc
Confidence 99999999999999999987643
No 344
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.57 E-value=0.75 Score=53.99 Aligned_cols=93 Identities=17% Similarity=0.084 Sum_probs=64.5
Q ss_pred EeCCCeEEEEeC--CCCeeEee-ecCCccEEEEEe--cCCEEEEeecCcEEEEEeCCC-------ceeeeee--------
Q 001123 436 GGANGLLLQWDP--NGNRLQDF-QYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEG-------NLLGGWV-------- 495 (1149)
Q Consensus 436 gs~DgtIrlWD~--tG~~l~tl-~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~G-------~~l~~l~-------- 495 (1149)
.-.++.|.+.|. ++..+.-+ .-|..+|.++-. .|..+.|....|.|.-|..++ ++...++
T Consensus 118 ~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f 197 (558)
T KOG0882|consen 118 LFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGF 197 (558)
T ss_pred cccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcc
Confidence 345788999998 33333333 348999998865 588999999999999999775 1111111
Q ss_pred -ccCCCeEEE--EecCCeEEeecCCCceeeeeccCC
Q 001123 496 -AHSSPVIKM--AVGAGYIFTLANHGGIRGWNVTSP 528 (1149)
Q Consensus 496 -gH~~~V~sL--a~Dg~~LaSgS~DgtIRlWdl~sp 528 (1149)
--.....++ .++|..+.+-+.|..||+.++.+.
T Consensus 198 ~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG 233 (558)
T KOG0882|consen 198 PKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG 233 (558)
T ss_pred cccccCccceEEccccCcccccCcccEEEEEEeccc
Confidence 112223333 479999999999999999987653
No 345
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.50 E-value=34 Score=42.21 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=26.5
Q ss_pred EEEecCCEEEEeecCcEEEEEeCC-Cceeeeeec
Q 001123 464 CLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA 496 (1149)
Q Consensus 464 sls~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~g 496 (1149)
.+...|..|+.|+.||.|+.+|.+ |+.+-.+.-
T Consensus 401 ~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 401 SLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred ceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 345678999999999999999965 888766553
No 346
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.36 E-value=0.1 Score=64.95 Aligned_cols=73 Identities=18% Similarity=0.218 Sum_probs=59.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc--EEEEECCC-cEEEE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGG-GIKIW 267 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~--L~SGS~Dg-TIRVW 267 (1149)
...-+|++|+.+...|+-|+..|.|+++++.+|.. .....+|..+|+-|--|.||. |.|+++-. ..-+|
T Consensus 1101 ~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~--------e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1101 TALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM--------EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred ccceeeEEeecCCceEEeeeccceEEEEEccCccc--------cccccccccccccccccCCcceeeeeccccCchHHHh
Confidence 45668999999999999999999999999999873 334578999999999999996 44444444 67899
Q ss_pred eCCC
Q 001123 268 PWEA 271 (1149)
Q Consensus 268 dl~t 271 (1149)
++..
T Consensus 1173 ~~~s 1176 (1516)
T KOG1832|consen 1173 DASS 1176 (1516)
T ss_pred cccc
Confidence 9854
No 347
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.29 E-value=4.7 Score=50.78 Aligned_cols=110 Identities=15% Similarity=0.123 Sum_probs=69.5
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCC------CcEEEEECCCcEEEEeCCC-c
Q 001123 200 DEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY------GDLWSGSEGGGIKIWPWEA-I 272 (1149)
Q Consensus 200 s~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpd------G~L~SGS~DgTIRVWdl~t-~ 272 (1149)
+.+|.+++|+|.||+|.+-.+.++. +..++ .-.-++.+|+++|| ++.++|+.-| +-+..-.= +
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~--------~~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg 149 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDD--------EITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG 149 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCc--------cceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc
Confidence 4469999999999999999987754 22222 12469999999998 2389999888 55543210 0
Q ss_pred -ceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEec
Q 001123 273 -EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNI 350 (1149)
Q Consensus 273 -~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~~ 350 (1149)
.....++. -.+.+.++.+ .|..++=++|..|+++|+.+++.+..+..
T Consensus 150 nk~~v~l~~-----------------------------~eG~I~~i~W--~g~lIAWand~Gv~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 150 NKDSVVLSE-----------------------------GEGPIHSIKW--RGNLIAWANDDGVKVYDTPTRQRLTNIPP 197 (846)
T ss_pred Cccceeeec-----------------------------CccceEEEEe--cCcEEEEecCCCcEEEeccccceeeccCC
Confidence 00000000 0123333333 23455556778899999999887776543
No 348
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=92.23 E-value=0.46 Score=57.64 Aligned_cols=68 Identities=16% Similarity=0.181 Sum_probs=44.4
Q ss_pred CCceEEEEEcCCCc-EEEEeCCCeEEEEeCCCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC
Q 001123 419 NRRTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 419 ~~~V~ava~s~Dg~-laSgs~DgtIrlWD~tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~ 487 (1149)
...+.+.+.+|+.. ++.|+.||+|++||.+-.... +..+.-..+.+++ +|..+++|+.-|.|++||+.
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-eeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 34566777777754 778888888888887422211 2222223344444 68888888888888888865
No 349
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=90.94 E-value=4.1 Score=52.48 Aligned_cols=65 Identities=20% Similarity=0.230 Sum_probs=51.6
Q ss_pred ceEEEEEcCCCcEEEEeCCCeEEEEeCCCCe-eEeeecCCccEEEE--EecCCEEEEeecCcEEEEEeC
Q 001123 421 RTEALTTSIDGMIWTGGANGLLLQWDPNGNR-LQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDL 486 (1149)
Q Consensus 421 ~V~ava~s~Dg~laSgs~DgtIrlWD~tG~~-l~tl~gH~~~V~sl--s~dG~~LaSGs~DGtIrlWD~ 486 (1149)
.-.|++.+.+|.||.||.+|.|||+|..|.. ...|.+-..+|..| +.||+||++.| +..|-|+|.
T Consensus 579 ~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 579 NFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 4568889999999999999999999987743 34455667899977 45899998776 457788884
No 350
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=90.92 E-value=0.71 Score=50.24 Aligned_cols=108 Identities=19% Similarity=0.200 Sum_probs=65.8
Q ss_pred EEEEeeCCeEEEe-CCCCEEEEeCCC-CCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEc-CCCCEEEEEeCC
Q 001123 136 RTIVCTEEQLWAG-GENGLRVWNLKE-LYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGD-EASGVVWSGHRD 212 (1149)
Q Consensus 136 ~~l~~~~~~l~ag-~D~tVrvWd~~~-g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs-~dg~~LaSGS~D 212 (1149)
..+......+..| .|+.|.+|+... +.... ..++ |..+|.|.... .++.+.++|..|
T Consensus 64 ~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d---------------~~~s-----~~e~i~~~Ip~~~~~~~~c~~~~d 123 (238)
T KOG2444|consen 64 QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSD---------------RVCS-----GEESIDLGIPNGRDSSLGCVGAQD 123 (238)
T ss_pred eeecccCceEEeecccceEEEecCCccchHHH---------------hhhc-----ccccceeccccccccceeEEeccC
Confidence 4444456666665 699988888651 11110 0011 13344444433 456789999999
Q ss_pred CeEEEEECCCCCCCCCCCccceEEeecCC-CCEEEEEEeCCCc-EEEE--ECCCcEEEEeCCC
Q 001123 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYGD-LWSG--SEGGGIKIWPWEA 271 (1149)
Q Consensus 213 GtIRvWdl~~g~~~~~~~~~~~~~l~GH~-~~VtsVafSpdG~-L~SG--S~DgTIRVWdl~t 271 (1149)
|.||.|++..++ ..-.-.+|. .++.....+..++ |.++ |.|.++|.|+++.
T Consensus 124 g~ir~~n~~p~k--------~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 124 GRIRACNIKPNK--------VLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CceeeeccccCc--------eeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 999999987654 122223455 5666655555444 6677 8899999999864
No 351
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=90.86 E-value=4 Score=51.94 Aligned_cols=65 Identities=14% Similarity=0.277 Sum_probs=51.3
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEEC---------CCcEEEEeCC
Q 001123 200 DEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSE---------GGGIKIWPWE 270 (1149)
Q Consensus 200 s~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~---------DgTIRVWdl~ 270 (1149)
-.+++.+..|+.-|+|-+=|+.+ ++.++++.+|++.|..+.... +.|+|++. |.-|+|||+.
T Consensus 184 R~Nnr~lf~G~t~G~V~LrD~~s--------~~~iht~~aHs~siSDfDv~G-NlLitCG~S~R~~~l~~D~FvkVYDLR 254 (1118)
T KOG1275|consen 184 RYNNRNLFCGDTRGTVFLRDPNS--------FETIHTFDAHSGSISDFDVQG-NLLITCGYSMRRYNLAMDPFVKVYDLR 254 (1118)
T ss_pred EecCcEEEeecccceEEeecCCc--------CceeeeeeccccceeeeeccC-CeEEEeecccccccccccchhhhhhhh
Confidence 34789999999999999998876 356899999999998765543 23778764 7789999997
Q ss_pred Ccc
Q 001123 271 AIE 273 (1149)
Q Consensus 271 t~~ 273 (1149)
...
T Consensus 255 mmr 257 (1118)
T KOG1275|consen 255 MMR 257 (1118)
T ss_pred hhh
Confidence 643
No 352
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.84 E-value=0.49 Score=60.67 Aligned_cols=92 Identities=24% Similarity=0.308 Sum_probs=63.7
Q ss_pred EEEEeCCCeEEEEeCCCCeeEee--ecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEEEEe-
Q 001123 433 IWTGGANGLLLQWDPNGNRLQDF--QYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV- 506 (1149)
Q Consensus 433 laSgs~DgtIrlWD~tG~~l~tl--~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa~- 506 (1149)
++.|++-|.|-..|.+|+.-.-. ..-.++|.++++ +|++++.|-.+|.|.+||.. ++.++.+.-|..++.++-.
T Consensus 102 ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v 181 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFV 181 (1206)
T ss_pred EEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEE
Confidence 66777778888888877532111 112467888876 68999999999999999976 6888888888877777641
Q ss_pred ----cCCeEEeecCCCceeeeecc
Q 001123 507 ----GAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 507 ----Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
++..++++..-|. +|.+.
T Consensus 182 ~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 182 GRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEeCCCcEEEEccCCCc--eEEEE
Confidence 4455666655554 67654
No 353
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=90.53 E-value=76 Score=42.44 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=67.1
Q ss_pred EEEEEcCCCc-EEEEeC----C--CeEEEEeCCCCeeEeeecCCccEEEE--EecCCEEEEeec---CcEEEEEeCCCce
Q 001123 423 EALTTSIDGM-IWTGGA----N--GLLLQWDPNGNRLQDFQYLPFAVQCL--CTFGSQIWVGYM---NGIVQVLDLEGNL 490 (1149)
Q Consensus 423 ~ava~s~Dg~-laSgs~----D--gtIrlWD~tG~~l~tl~gH~~~V~sl--s~dG~~LaSGs~---DGtIrlWD~~G~~ 490 (1149)
..+.+-.||. +|..+- . ..||+|+.+|+.-.+-..-.+--.++ .+.|.+||+... .-.|.+|..+|-.
T Consensus 213 ~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr 292 (928)
T PF04762_consen 213 VRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLR 292 (928)
T ss_pred eEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcE
Confidence 4566777876 343332 2 58999999987554443211111234 458999998874 4678888887755
Q ss_pred eeeee----ccCCCeEEEEe--cCCeEEeecCCCceeeeeccC
Q 001123 491 LGGWV----AHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 491 l~~l~----gH~~~V~sLa~--Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
...|. .....|..|++ |+..||-.-.|. |.+|-...
T Consensus 293 hgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~N 334 (928)
T PF04762_consen 293 HGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSN 334 (928)
T ss_pred eeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeC
Confidence 44333 34567888885 888888755554 99997653
No 354
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=89.73 E-value=0.96 Score=55.56 Aligned_cols=112 Identities=16% Similarity=0.207 Sum_probs=75.0
Q ss_pred ccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeec--CCccEEEEEe--cCCEEEEeecCcEEEEEeC
Q 001123 413 GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQY--LPFAVQCLCT--FGSQIWVGYMNGIVQVLDL 486 (1149)
Q Consensus 413 g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~g--H~~~V~sls~--dG~~LaSGs~DGtIrlWD~ 486 (1149)
.++.+|...|..+.+....+ +-+...+|.|.+|=+ .|.-...+.. ..+-|.++++ ||+.|+..+.||.|-|=.+
T Consensus 65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv 144 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV 144 (1189)
T ss_pred hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence 36788999999999988876 667778999999999 8865554443 3345778876 7999999999998877776
Q ss_pred CCcee--eeeeccC-CCeEEEEecCCeEEeecCCCceeeeec
Q 001123 487 EGNLL--GGWVAHS-SPVIKMAVGAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 487 ~G~~l--~~l~gH~-~~V~sLa~Dg~~LaSgS~DgtIRlWdl 525 (1149)
+|..+ +.|+|.. ..|. -++|.+.++-+=..|.+.++|-
T Consensus 145 dGNRIwgKeLkg~~l~hv~-ws~D~~~~Lf~~ange~hlydn 185 (1189)
T KOG2041|consen 145 DGNRIWGKELKGQLLAHVL-WSEDLEQALFKKANGETHLYDN 185 (1189)
T ss_pred ccceecchhcchhecccee-ecccHHHHHhhhcCCcEEEecc
Confidence 66543 2222211 1111 1245555555555667777764
No 355
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.44 E-value=0.81 Score=58.80 Aligned_cols=69 Identities=20% Similarity=0.422 Sum_probs=51.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEe---CCC-cEEEEECCCcEEE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCIS---SYG-DLWSGSEGGGIKI 266 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafS---pdG-~L~SGS~DgTIRV 266 (1149)
.++|.|++|+.+|+++.-|..+|.|.+||+..+. ..+.+.-|..+++++-+. .++ .++++-..|. +
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k--------~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f 199 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK--------ILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--F 199 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCc--------ceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--e
Confidence 7899999999999999999999999999998754 244444555555555543 233 3777766665 7
Q ss_pred EeC
Q 001123 267 WPW 269 (1149)
Q Consensus 267 Wdl 269 (1149)
|.+
T Consensus 200 ~~l 202 (1206)
T KOG2079|consen 200 WKL 202 (1206)
T ss_pred EEE
Confidence 876
No 356
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.85 E-value=0.86 Score=52.92 Aligned_cols=90 Identities=20% Similarity=0.174 Sum_probs=69.4
Q ss_pred ccCCCCceEEEEEcCCCc--EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEec---CCEEEEeecCcEEEEEeCC-
Q 001123 415 FGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE- 487 (1149)
Q Consensus 415 ~~~~~~~V~ava~s~Dg~--laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~d---G~~LaSGs~DGtIrlWD~~- 487 (1149)
+.++...|..+++||... +..++.+.+|+|.|+ +..++.++..| ..+++.++| -.+|+.|...|.|.++|..
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 345566777888998754 678999999999999 66778888888 788988875 4799999999999999965
Q ss_pred -Cceeeeeec--cCCCeEEEE
Q 001123 488 -GNLLGGWVA--HSSPVIKMA 505 (1149)
Q Consensus 488 -G~~l~~l~g--H~~~V~sLa 505 (1149)
...+..+.+ -..+|..|+
T Consensus 268 ~~~~~~e~~a~~t~~pv~~i~ 288 (463)
T KOG1645|consen 268 PEGPLMELVANVTINPVHKIA 288 (463)
T ss_pred CCchHhhhhhhhccCcceeec
Confidence 334455555 235677776
No 357
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=88.74 E-value=99 Score=41.39 Aligned_cols=67 Identities=7% Similarity=-0.081 Sum_probs=49.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecC-CCCEEEEEEeCCCc-EEEEECCCcEEEE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYGD-LWSGSEGGGIKIW 267 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH-~~~VtsVafSpdG~-L~SGS~DgTIRVW 267 (1149)
...|.++.|-.+..-|.-+..+|.|.+=|.++.. ....|- .++|.++++|||.+ ++-...++|+-+=
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~----------~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~m 136 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLE----------LEIVGNVDNGISAASWSPDEELLALITGRQTLLFM 136 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccc----------eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEE
Confidence 4578888888888888888889999988887743 223344 57899999999998 4444556666553
No 358
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.63 E-value=53 Score=41.35 Aligned_cols=114 Identities=12% Similarity=0.108 Sum_probs=73.7
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcE-EEEECCCcEEEEeCCCcceee
Q 001123 198 VGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWPWEAIEKAL 276 (1149)
Q Consensus 198 afs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L-~SGS~DgTIRVWdl~t~~~~~ 276 (1149)
.++..+++|+-|+.-|.+-+++-.++.+ ..+...|-.+.+...++|++.++ +.|+..|.|-+.-++...+
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~~-------~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p-- 110 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGEM-------RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP-- 110 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchhh-------hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC--
Confidence 4566789999999999999999887663 23333445566777778888775 6788888888776654221
Q ss_pred ecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecC-CceEEEEcCC
Q 001123 277 SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDART 341 (1149)
Q Consensus 277 ~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd-~tIrLWD~~T 341 (1149)
+.-...... +. .+...|.+++++.++-++++|.+ +.|.+--+.+
T Consensus 111 ---~~~~~~t~~-----------d~-------~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 111 ---RDLDYVTPC-----------DK-------SHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ---Ccceeeccc-----------cc-------cCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 110000000 00 12256888899999999998865 4555555444
No 359
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=88.63 E-value=5.5 Score=49.92 Aligned_cols=93 Identities=11% Similarity=0.043 Sum_probs=64.4
Q ss_pred cEEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe-----cC-CEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEE
Q 001123 432 MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT-----FG-SQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK 503 (1149)
Q Consensus 432 ~laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~-----dG-~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~s 503 (1149)
.||++.-.|.|.+||. .+..+-.+..|.++|..+.+ +. ..|++=....+|.+|+.+ |+..-....-.....+
T Consensus 81 liAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~ 160 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSC 160 (1062)
T ss_pred eEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceee
Confidence 3678888899999999 78888889999999998854 23 567777778899999864 8776655544444444
Q ss_pred EE---ecCCeEEeecCCCceeeee
Q 001123 504 MA---VGAGYIFTLANHGGIRGWN 524 (1149)
Q Consensus 504 La---~Dg~~LaSgS~DgtIRlWd 524 (1149)
+. +|.+.+.-.+..|.+-+-+
T Consensus 161 f~~DPfd~rh~~~l~s~g~vl~~~ 184 (1062)
T KOG1912|consen 161 FRVDPFDSRHFCVLGSKGFVLSCK 184 (1062)
T ss_pred eeeCCCCcceEEEEccCceEEEEe
Confidence 55 3555544444444444433
No 360
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.37 E-value=20 Score=45.89 Aligned_cols=125 Identities=15% Similarity=0.204 Sum_probs=78.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecC--CCCEEEEEEeCCCcE-EEEECCCcEEEE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH--RGPVLSLCISSYGDL-WSGSEGGGIKIW 267 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH--~~~VtsVafSpdG~L-~SGS~DgTIRVW 267 (1149)
..++.+++++.+-+.+|.|-.||.|....-+-- +.+..... --| ++|||+++|-.+++. +=+..-..|.++
T Consensus 125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~-----RDrgsr~~-~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y 198 (933)
T KOG2114|consen 125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL-----RDRGSRQD-YSHRGKEPITGLALRSDGKSVLFVATTEQVMLY 198 (933)
T ss_pred CCcceEEEEEccccEEEEEecCcEEEEEcCcch-----hcccccee-eeccCCCCceeeEEecCCceeEEEEecceeEEE
Confidence 568899999999999999999999998753211 11111111 124 679999999999872 223334568888
Q ss_pred eCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEE
Q 001123 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKV 347 (1149)
Q Consensus 268 dl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~ 347 (1149)
.+....+.+.. +.+++ ..+.|..+++....+.++++..+.++|......-..
T Consensus 199 ~l~gr~p~~~~------------------ld~~G----------~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfa 250 (933)
T KOG2114|consen 199 SLSGRTPSLKV------------------LDNNG----------ISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFA 250 (933)
T ss_pred EecCCCcceee------------------eccCC----------ccceeeecCCCCccEEEecCceEEEEcCCCcceeee
Confidence 88632211110 11111 345676776666657777777788898875555445
Q ss_pred Ee
Q 001123 348 FN 349 (1149)
Q Consensus 348 l~ 349 (1149)
|.
T Consensus 251 f~ 252 (933)
T KOG2114|consen 251 FE 252 (933)
T ss_pred ec
Confidence 54
No 361
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.31 E-value=0.42 Score=59.73 Aligned_cols=121 Identities=15% Similarity=0.133 Sum_probs=86.4
Q ss_pred cccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEee-cCc-EEEEEeCC
Q 001123 414 GFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGY-MNG-IVQVLDLE 487 (1149)
Q Consensus 414 ~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs-~DG-tIrlWD~~ 487 (1149)
.|..+...-++++|+-+.. |+.|+-.|.|+++++ +|.......+|.++|+-+.+ ||..+.+.+ .+. ...+|+..
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccc
Confidence 4666777778899988755 899999999999999 89988999999999999954 787555444 333 67899974
Q ss_pred --CceeeeeeccCCCeEEEEec----CCeEEeecCCCceeeeeccCCCCCchhhhhhcc
Q 001123 488 --GNLLGGWVAHSSPVIKMAVG----AGYIFTLANHGGIRGWNVTSPGPLDSILCKELA 540 (1149)
Q Consensus 488 --G~~l~~l~gH~~~V~sLa~D----g~~LaSgS~DgtIRlWdl~sp~pld~~i~~~l~ 540 (1149)
+...++|.+-. ++.+. .+.|-+.+ ..+-++|+.+..|++.++...+.
T Consensus 1176 s~~~~~Hsf~ed~----~vkFsn~~q~r~~gt~~--d~a~~YDvqT~~~l~tylt~~~~ 1228 (1516)
T KOG1832|consen 1176 STGGPRHSFDEDK----AVKFSNSLQFRALGTEA--DDALLYDVQTCSPLQTYLTDTVT 1228 (1516)
T ss_pred cccCccccccccc----eeehhhhHHHHHhcccc--cceEEEecccCcHHHHhcCcchh
Confidence 66777776532 22221 12232333 34678999998888776665443
No 362
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=87.87 E-value=4.2 Score=39.79 Aligned_cols=61 Identities=20% Similarity=0.178 Sum_probs=45.4
Q ss_pred EEcCCC-CEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeC
Q 001123 198 VGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (1149)
Q Consensus 198 afs~dg-~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl 269 (1149)
.|+.|| .-|+.||.|..||+|+-+. .+.... -++.|++++-...++++-|...|||.+++-
T Consensus 9 d~d~dg~~eLlvGs~D~~IRvf~~~e----------~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 9 DFDGDGENELLVGSDDFEIRVFKGDE----------IVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred ecCCCCcceEEEecCCcEEEEEeCCc----------EEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 344454 6788999999999998653 133332 356888888887788888999999988875
No 363
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=87.42 E-value=71 Score=38.07 Aligned_cols=70 Identities=11% Similarity=0.190 Sum_probs=35.7
Q ss_pred EEcCCC-CEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCC-CCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcce
Q 001123 198 VGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEK 274 (1149)
Q Consensus 198 afs~dg-~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~-~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~ 274 (1149)
.|.+|| ++|+++..||.-.+|-++-.. .++.+|.-+. ....+..++|+++ |+=...+.+++.=|++|.+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t-------~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLAT-------GEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT--------EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEccc-------CEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE
Confidence 356777 677888889988777554222 2366665543 2233456677766 54344456777778887654
No 364
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=86.68 E-value=82 Score=38.01 Aligned_cols=48 Identities=15% Similarity=0.399 Sum_probs=37.8
Q ss_pred eEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCC
Q 001123 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (1149)
Q Consensus 214 tIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~ 270 (1149)
.|++++..+... . ...|.. +.|-++.|+.+-+|+.-..||++++.|+.
T Consensus 62 ~I~iys~sG~ll------~-~i~w~~--~~iv~~~wt~~e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSSSGKLL------S-SIPWDS--GRIVGMGWTDDEELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECCCCCEe------E-EEEECC--CCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence 599999876431 1 234655 79999999997779888999999999985
No 365
>PRK13616 lipoprotein LpqB; Provisional
Probab=86.57 E-value=32 Score=43.53 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=37.3
Q ss_pred EEEEEcCCCcEEEEeCCCeEEEEeC--CCCeeEeeec--CCccEEEEEecCCEEEEeecCcEEEE
Q 001123 423 EALTTSIDGMIWTGGANGLLLQWDP--NGNRLQDFQY--LPFAVQCLCTFGSQIWVGYMNGIVQV 483 (1149)
Q Consensus 423 ~ava~s~Dg~laSgs~DgtIrlWD~--tG~~l~tl~g--H~~~V~sls~dG~~LaSGs~DGtIrl 483 (1149)
..+.+..++.|+.+..++...+|-+ .|.....+.+ ....+.+|+.....|+.+..+|.+++
T Consensus 500 ~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~~iyv~~~~g~~~l 564 (591)
T PRK13616 500 VSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPSTVYVTDARAVLQL 564 (591)
T ss_pred ccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCceEEEEcCCceEEe
Confidence 4566788888776666555556655 6754333333 24567777665556777777775544
No 366
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=86.44 E-value=2.6 Score=51.67 Aligned_cols=71 Identities=27% Similarity=0.289 Sum_probs=54.6
Q ss_pred eEEEEEcCCC-cEEEEeCCCeEEEEeCCCCeeEeeecCCccEE-EEEe--cCCEEEEeecCcEEEEEeCC-Cceee
Q 001123 422 TEALTTSIDG-MIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQ-CLCT--FGSQIWVGYMNGIVQVLDLE-GNLLG 492 (1149)
Q Consensus 422 V~ava~s~Dg-~laSgs~DgtIrlWD~tG~~l~tl~gH~~~V~-sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~ 492 (1149)
+.-+.++|.- .+|.+..+|.|.+.-++-+++-++.-|.-.+. ++++ ||+.||+|-.||+|++-|++ |..+.
T Consensus 23 i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 23 IKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred eEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3444566663 47888889988888777777777776666666 7765 89999999999999999987 55544
No 367
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=86.22 E-value=6.4 Score=43.87 Aligned_cols=79 Identities=14% Similarity=0.021 Sum_probs=56.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccce-EEeecCCCCEEEEEEeCCCc--EEEEE-CCCcEEE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEV-LSWQAHRGPVLSLCISSYGD--LWSGS-EGGGIKI 266 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~-~~l~GH~~~VtsVafSpdG~--L~SGS-~DgTIRV 266 (1149)
+..=.|..|+......|.|++||++-+||+..-. .+..+. .+=..|.|+|..+.|++.|- |+==| .=+.+.|
T Consensus 203 ~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~----tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv 278 (344)
T KOG4532|consen 203 SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA----TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHV 278 (344)
T ss_pred CCCceeeeeccCcceEEEEecCCcEEEEEecccc----cchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEE
Confidence 3445789999999999999999999999997532 111111 12234899999999999874 33222 2366888
Q ss_pred EeCCCcc
Q 001123 267 WPWEAIE 273 (1149)
Q Consensus 267 Wdl~t~~ 273 (1149)
-|+.++.
T Consensus 279 ~D~R~~~ 285 (344)
T KOG4532|consen 279 VDTRNYV 285 (344)
T ss_pred EEcccCc
Confidence 8887754
No 368
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=86.04 E-value=2.8 Score=53.83 Aligned_cols=93 Identities=22% Similarity=0.284 Sum_probs=65.0
Q ss_pred cEEEEeCCCeEEEEeC--CCCeeEeeecC----CccEEEEEecC-CEEEEeecCcEEEEEeCCCce-eeeeeccCCCeEE
Q 001123 432 MIWTGGANGLLLQWDP--NGNRLQDFQYL----PFAVQCLCTFG-SQIWVGYMNGIVQVLDLEGNL-LGGWVAHSSPVIK 503 (1149)
Q Consensus 432 ~laSgs~DgtIrlWD~--tG~~l~tl~gH----~~~V~sls~dG-~~LaSGs~DGtIrlWD~~G~~-l~~l~gH~~~V~s 503 (1149)
+.+.|-.+..+..||. .|..+..-..| .....|++..+ .+||+||.+|.|||+|.-|+. -..|.|=..+|.+
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~ 623 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIG 623 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeE
Confidence 4677888999999999 46433222233 23466887764 699999999999999966643 3455566789999
Q ss_pred EE--ecCCeEEeecCCCceeeeec
Q 001123 504 MA--VGAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 504 La--~Dg~~LaSgS~DgtIRlWdl 525 (1149)
|. .||+||+.. .+..+-|.+.
T Consensus 624 iDvt~DGkwilaT-c~tyLlLi~t 646 (794)
T PF08553_consen 624 IDVTADGKWILAT-CKTYLLLIDT 646 (794)
T ss_pred EEecCCCcEEEEe-ecceEEEEEE
Confidence 86 699987743 2445555554
No 369
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=85.87 E-value=87 Score=38.25 Aligned_cols=61 Identities=20% Similarity=0.104 Sum_probs=36.9
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEE
Q 001123 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIW 267 (1149)
Q Consensus 193 ~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVW 267 (1149)
....|.++|+|+.++- ..||.-.+...... ... ..+.-...+|++.++.+.-...++|++.
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~--------r~k-----~~G~g~~~vw~~~n~yAv~~~~~~I~I~ 94 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAW--------RNK-----AFGSGLSFVWSSRNRYAVLESSSTIKIY 94 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTT--------EEE-----EEEE-SEEEE-TSSEEEEE-TTS-EEEE
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCC--------ccc-----ccCceeEEEEecCccEEEEECCCeEEEE
Confidence 4568999999999888 55666666663221 111 1234456788888888877778999996
No 370
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.99 E-value=11 Score=45.78 Aligned_cols=64 Identities=20% Similarity=0.236 Sum_probs=50.7
Q ss_pred eEEEEEcCCCcEEEEeCCCeEEEEeCCCCe-eEeeecCCccEEEE--EecCCEEEEeecCcEEEEEeC
Q 001123 422 TEALTTSIDGMIWTGGANGLLLQWDPNGNR-LQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDL 486 (1149)
Q Consensus 422 V~ava~s~Dg~laSgs~DgtIrlWD~tG~~-l~tl~gH~~~V~sl--s~dG~~LaSGs~DGtIrlWD~ 486 (1149)
-.|.+...+|.|+.||.+|.|||||..|.. ...|.+-..+|.-| ++||++|+..+ +.++-|-|+
T Consensus 433 Fsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 433 FSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred cceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 357788899999999999999999997644 44566777788866 56999998765 567888884
No 371
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=84.30 E-value=74 Score=35.44 Aligned_cols=74 Identities=15% Similarity=0.061 Sum_probs=46.5
Q ss_pred ceEEEEEcCCCcEEEEeCCCeEEEEeCCCCeeE-eeecCCccEEEEEecCCEEEEeecCcEEEEEeCC-Cceeeeeecc
Q 001123 421 RTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQ-DFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH 497 (1149)
Q Consensus 421 ~V~ava~s~Dg~laSgs~DgtIrlWD~tG~~l~-tl~gH~~~V~sls~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH 497 (1149)
.+..+..+.+..|+ + .|..-..-|..|+..+ ....-.....++++...+|+.-+.++ |.||++. |++++++.++
T Consensus 191 ~~~~~~~~~~e~Ll-~-~~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~~~pyli~~~~~~-iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 191 PLGIFQLSDNEFLL-C-YDNIGVFVNKNGEPSRKSTIQWSSAPQSVAYSSPYLIAFSSNS-IEVRSLETGELVQTIPLP 266 (275)
T ss_pred ceEEEEeCCceEEE-E-ecceEEEEcCCCCcCcccEEEcCCchhEEEEECCEEEEECCCE-EEEEECcCCcEEEEEECC
Confidence 34444454443344 3 3445556677887655 22222345667888888998877755 9999976 8888877654
No 372
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.96 E-value=80 Score=35.53 Aligned_cols=112 Identities=15% Similarity=0.108 Sum_probs=69.0
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecC-CCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcceeeecCCC
Q 001123 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPE 281 (1149)
Q Consensus 203 g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH-~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~~~~~l~~~ 281 (1149)
..+++-||.-+.++.-|..+|.+ .|+.- .+.|.+-+.--...++-|...|.+.+-+..||++...+...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~----------~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~ 92 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNL----------IWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL 92 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcE----------EeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeeh
Confidence 57888899999988888887652 23321 22333333222223667777788888888777654444322
Q ss_pred cceeeEEEeeeccccccccccccceeeeecCCeEEE-EEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCce
Q 001123 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNL-LSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQI 354 (1149)
Q Consensus 282 ~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~l-as~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~ 354 (1149)
+ .+++- ..+.+++.+|.++ |+++..-|.++..++...+-.|.+
T Consensus 93 ~------------------------------~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~ 137 (354)
T KOG4649|consen 93 E------------------------------TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT 137 (354)
T ss_pred h------------------------------hhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce
Confidence 1 11111 2345677888876 577889999988888776654443
No 373
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=83.58 E-value=3.4 Score=50.76 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=58.0
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEE-EEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVL-SLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 192 ~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~Vt-sVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
..+.-+.++|.-.+||.+-.+|.|-+-.++- ..+.++.=|...|+ +++|.|||+ |+-|=.||||++-|+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~---------qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dv 91 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNW---------QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDV 91 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEecc---------ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEc
Confidence 4567789999999999999999887777653 22455554666666 999999999 567889999999999
Q ss_pred CCcc
Q 001123 270 EAIE 273 (1149)
Q Consensus 270 ~t~~ 273 (1149)
+++.
T Consensus 92 e~~~ 95 (665)
T KOG4640|consen 92 EKGG 95 (665)
T ss_pred cCCC
Confidence 8754
No 374
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=82.26 E-value=70 Score=39.56 Aligned_cols=112 Identities=20% Similarity=0.415 Sum_probs=69.1
Q ss_pred CccccccceeEEEEEee-CCeEEEeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCC
Q 001123 125 PLRETQIGCFLRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS 203 (1149)
Q Consensus 125 pl~e~~~~~~l~~l~~~-~~~l~ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg 203 (1149)
+.++...+.++..|..+ .+.+|+|.++++-.+|..+++.... +..|+. -+|+++..+-+|
T Consensus 157 ~~r~ll~d~~V~aLv~D~~g~lWvgT~dGL~~fd~~~gkalql-------------~s~~~d------k~I~al~~d~qg 217 (671)
T COG3292 157 DVRPLLKDTPVVALVFDANGRLWVGTPDGLSYFDAGRGKALQL-------------ASPPLD------KAINALIADVQG 217 (671)
T ss_pred CccccccCccceeeeeeccCcEEEecCCcceEEccccceEEEc-------------CCCcch------hhHHHHHHHhcC
Confidence 33444556677778887 8899999999999999887765432 112221 245556555555
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCCCCCccceEEe--ecCCCCEEEEEEeCCCcEEEEECCCcEEE
Q 001123 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW--QAHRGPVLSLCISSYGDLWSGSEGGGIKI 266 (1149)
Q Consensus 204 ~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l--~GH~~~VtsVafSpdG~L~SGS~DgTIRV 266 (1149)
.||-|..+| |.+-+.++.+. ..+ .=-.+-|+.+.=..+|.+|-|++.|..|.
T Consensus 218 -~LWVGTdqG-v~~~e~~G~~~---------sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~ 271 (671)
T COG3292 218 -RLWVGTDQG-VYLQEAEGWRA---------SNWGPMLPSGNILLLVQDAQGELWIGTENGLWRT 271 (671)
T ss_pred -cEEEEeccc-eEEEchhhccc---------cccCCCCcchheeeeecccCCCEEEeecccceeE
Confidence 577788877 44545444211 000 00245677666666778999998885543
No 375
>PRK02888 nitrous-oxide reductase; Validated
Probab=80.40 E-value=46 Score=41.93 Aligned_cols=59 Identities=7% Similarity=0.045 Sum_probs=36.6
Q ss_pred CCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc--EEEEECCCcEEEEeCCCcce
Q 001123 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEK 274 (1149)
Q Consensus 212 DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~--L~SGS~DgTIRVWdl~t~~~ 274 (1149)
+++|.+.|..+..+ .... .....-=-.....|.+||||+ ++++..+.+|-|-|+++.+.
T Consensus 295 gn~V~VID~~t~~~---~~~~-v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 295 GSKVPVVDGRKAAN---AGSA-LTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred CCEEEEEECCcccc---CCcc-eEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence 56788888765110 0001 111111123556889999998 46788899999999987543
No 376
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.31 E-value=6.4 Score=47.59 Aligned_cols=90 Identities=17% Similarity=0.266 Sum_probs=63.1
Q ss_pred EEEeCCCeEEEEeC--CCC-eeEeeecCCc----cEEEEEec-CCEEEEeecCcEEEEEeCCCce-eeeeeccCCCeEEE
Q 001123 434 WTGGANGLLLQWDP--NGN-RLQDFQYLPF----AVQCLCTF-GSQIWVGYMNGIVQVLDLEGNL-LGGWVAHSSPVIKM 504 (1149)
Q Consensus 434 aSgs~DgtIrlWD~--tG~-~l~tl~gH~~----~V~sls~d-G~~LaSGs~DGtIrlWD~~G~~-l~~l~gH~~~V~sL 504 (1149)
+.|=+|..|.-||. .|. .|..-.+|.. ..+|++.. ..+||+||.+|.|||+|..|+. -..|.|-..+|..|
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hV 477 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHV 477 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeE
Confidence 45667889999999 565 5555555543 35577654 4699999999999999976543 45667777889887
Q ss_pred E--ecCCeEEeecCCCceeeee
Q 001123 505 A--VGAGYIFTLANHGGIRGWN 524 (1149)
Q Consensus 505 a--~Dg~~LaSgS~DgtIRlWd 524 (1149)
. .||++|+.. .+..+-+-+
T Consensus 478 dvtadGKwil~T-c~tyLlLi~ 498 (644)
T KOG2395|consen 478 DVTADGKWILAT-CKTYLLLID 498 (644)
T ss_pred EeeccCcEEEEe-cccEEEEEE
Confidence 5 699987633 344444443
No 377
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=79.38 E-value=4.7 Score=33.28 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=29.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNA 222 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~ 222 (1149)
...|.+++++|...+||.|..||.|.+++++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 46799999999999999999999999999843
No 378
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=77.44 E-value=1.3e+02 Score=40.27 Aligned_cols=104 Identities=11% Similarity=0.038 Sum_probs=62.7
Q ss_pred EEEEcCCCcEEEE-----eCC-CeEEEEeCCCCeeEeee--cCCccEEEEEecCCEEEEee---cCcEEEEEeCCCc---
Q 001123 424 ALTTSIDGMIWTG-----GAN-GLLLQWDPNGNRLQDFQ--YLPFAVQCLCTFGSQIWVGY---MNGIVQVLDLEGN--- 489 (1149)
Q Consensus 424 ava~s~Dg~laSg-----s~D-gtIrlWD~tG~~l~tl~--gH~~~V~sls~dG~~LaSGs---~DGtIrlWD~~G~--- 489 (1149)
.|.+-.||.+++. -.+ ++|++||.+|..=.+-. .......+-.+.|..+|+-. +|+.|.++..+|-
T Consensus 200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg 279 (1265)
T KOG1920|consen 200 SISWRGDGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG 279 (1265)
T ss_pred eEEEccCCcEEEEEEEeccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc
Confidence 4556777753322 224 79999999864311111 11122233345788888653 6678999997653
Q ss_pred -eeeeeeccCCCeEEEEe--cCCeEEe---ecCCCceeeeeccC
Q 001123 490 -LLGGWVAHSSPVIKMAV--GAGYIFT---LANHGGIRGWNVTS 527 (1149)
Q Consensus 490 -~l~~l~gH~~~V~sLa~--Dg~~LaS---gS~DgtIRlWdl~s 527 (1149)
..-.+..-...|..|++ ++..|+. ......|++|-+..
T Consensus 280 ~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 280 EFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred ccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 33345555556888986 6677765 34444599998753
No 379
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=76.25 E-value=2.1e+02 Score=35.72 Aligned_cols=54 Identities=13% Similarity=0.109 Sum_probs=35.5
Q ss_pred CcEEEEEeCC-CceeeeeeccCCCeEE-EEecCCeEEeecCCCceeeeeccCCCCC
Q 001123 478 NGIVQVLDLE-GNLLGGWVAHSSPVIK-MAVGAGYIFTLANHGGIRGWNVTSPGPL 531 (1149)
Q Consensus 478 DGtIrlWD~~-G~~l~~l~gH~~~V~s-La~Dg~~LaSgS~DgtIRlWdl~sp~pl 531 (1149)
-|.|.-||+. |+.+-.........-+ +...+..++.++.||.++.+|..+..++
T Consensus 440 ~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~l 495 (527)
T TIGR03075 440 MGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEEL 495 (527)
T ss_pred ceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEe
Confidence 4778899964 7765544322211222 3446678888888999999998876553
No 380
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=71.92 E-value=4.5 Score=38.90 Aligned_cols=13 Identities=38% Similarity=0.493 Sum_probs=6.8
Q ss_pred EEEEECccCCCCC
Q 001123 798 MVIFLGDFNYRLD 810 (1149)
Q Consensus 798 ~vfw~GDlNyRi~ 810 (1149)
.++++||||..-.
T Consensus 32 ~~Ii~GDFN~~~~ 44 (119)
T PF14529_consen 32 PIIIGGDFNAHHP 44 (119)
T ss_dssp SEEEEEE-----G
T ss_pred CEEEEeECCCCch
Confidence 6899999999644
No 381
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=71.63 E-value=15 Score=44.76 Aligned_cols=106 Identities=16% Similarity=0.120 Sum_probs=71.4
Q ss_pred EEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCc-cEEEEEecCCEEEEeec-----------CcEEEEEeCC-C
Q 001123 424 ALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPF-AVQCLCTFGSQIWVGYM-----------NGIVQVLDLE-G 488 (1149)
Q Consensus 424 ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~-~V~sls~dG~~LaSGs~-----------DGtIrlWD~~-G 488 (1149)
-|.+||-|+ |+|=..-| |.+|-. +-..++.|. |++ .-..+++.-+||++=+. ...|.|||+. |
T Consensus 215 yv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG 292 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG 292 (698)
T ss_pred eEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence 366999987 56655555 889987 435666664 433 33355677889987652 2578999965 8
Q ss_pred ceeeeeec--cCCCeEEE---EecCCeEEeecCCCceeeeeccCCCCCc
Q 001123 489 NLLGGWVA--HSSPVIKM---AVGAGYIFTLANHGGIRGWNVTSPGPLD 532 (1149)
Q Consensus 489 ~~l~~l~g--H~~~V~sL---a~Dg~~LaSgS~DgtIRlWdl~sp~pld 532 (1149)
.+.++|.. -...++-+ +.|++|+|-... .+|-|++..+..++|
T Consensus 293 ~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld 340 (698)
T KOG2314|consen 293 LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLD 340 (698)
T ss_pred chhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeec
Confidence 88888776 33344444 369999986655 578888876655554
No 382
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=70.69 E-value=1.2e+02 Score=39.07 Aligned_cols=68 Identities=21% Similarity=0.148 Sum_probs=47.7
Q ss_pred EEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCC
Q 001123 244 VLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS 322 (1149)
Q Consensus 244 VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~ 322 (1149)
+++++|+|.-- |++|=+-|.+-+|..++.+...... .+..++..+-++++
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~-----------------------------th~a~i~~l~wS~~ 112 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE-----------------------------THPAPIQGLDWSHD 112 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeecc-----------------------------CCCCCceeEEecCC
Confidence 57799999654 6788888999999987644211100 01245667778889
Q ss_pred CCEEEEecC-CceEEEEcC
Q 001123 323 RAKVWSAGF-LSFALWDAR 340 (1149)
Q Consensus 323 ~~~v~Sasd-~tIrLWD~~ 340 (1149)
|.++.++.. +.+.+|...
T Consensus 113 G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 113 GTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCeEEEcCCCceeEEEEee
Confidence 988888765 568899765
No 383
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.34 E-value=1.1e+02 Score=34.90 Aligned_cols=62 Identities=16% Similarity=0.212 Sum_probs=44.1
Q ss_pred EEcCCCCEEEEEeCC-----CeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEE
Q 001123 198 VGDEASGVVWSGHRD-----GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIW 267 (1149)
Q Consensus 198 afs~dg~~LaSGS~D-----GtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVW 267 (1149)
.||+||.+|..--.| |.|-++|...+. ..+-.|.+|.-.=..|.+.+||+++..-. |-|+.-
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~f-------qrvgE~~t~GiGpHev~lm~DGrtlvvan-GGIeth 186 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGF-------QRVGEFSTHGIGPHEVTLMADGRTLVVAN-GGIETH 186 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEeccccc-------ceecccccCCcCcceeEEecCCcEEEEeC-Cceecc
Confidence 589999999865444 788899987533 44566788866667789999998544432 446665
No 384
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.87 E-value=11 Score=41.10 Aligned_cols=49 Identities=27% Similarity=0.428 Sum_probs=41.0
Q ss_pred ceeEEEEEEecCCeeeEEEEEeecCCccccCCCCCCCCCCCCCCCCCCCeEEecCceeeCCCCeeEEEEEE
Q 001123 981 QDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIKPDRTAEMSVHH 1051 (1149)
Q Consensus 981 ~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wl~v~p~~g~i~p~~~~~i~~~~ 1051 (1149)
+....|+|+|+... ...|.+-|- -|.+..|.|..|+|.||++++|.+.+
T Consensus 26 ~~~~~l~l~N~t~~-~vaFKvktT---------------------~p~~y~VrP~~G~i~p~~t~~i~v~~ 74 (218)
T KOG0439|consen 26 QVKCSLTLKNPTKL-RVAFKVKTT---------------------APKLYCVRPNGGVIDPGSTVEIEVTH 74 (218)
T ss_pred eEEEEEEEecCCCC-ceEEEEEcC---------------------CCCeEEEcCCcceECCCCcEEEEEEe
Confidence 45678999999665 788998862 36788999999999999999999963
No 385
>PRK02888 nitrous-oxide reductase; Validated
Probab=69.76 E-value=1.5e+02 Score=37.54 Aligned_cols=101 Identities=11% Similarity=0.115 Sum_probs=60.4
Q ss_pred CceEEEEEcCCCc-E-EEEeCCCeEEEEeC-CCC------------eeEeeecCCccEE-EEEecCCEEEEeecCcEEEE
Q 001123 420 RRTEALTTSIDGM-I-WTGGANGLLLQWDP-NGN------------RLQDFQYLPFAVQ-CLCTFGSQIWVGYMNGIVQV 483 (1149)
Q Consensus 420 ~~V~ava~s~Dg~-l-aSgs~DgtIrlWD~-tG~------------~l~tl~gH~~~V~-sls~dG~~LaSGs~DGtIrl 483 (1149)
.....+.++|||+ + +++-.+.+|-+.|+ +.+ ...+..-..++.. .+..+|....|-..|..|-.
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~k 400 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVK 400 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEE
Confidence 3455688999998 4 45666899999999 422 1222222233322 33334666667778999999
Q ss_pred EeCCC-----------ceeeeeeccCCCeEE-------EEecCCeEEee---cCCCce
Q 001123 484 LDLEG-----------NLLGGWVAHSSPVIK-------MAVGAGYIFTL---ANHGGI 520 (1149)
Q Consensus 484 WD~~G-----------~~l~~l~gH~~~V~s-------La~Dg~~LaSg---S~DgtI 520 (1149)
||++. ..+..+.-|-.+..- ..+||+||++. |.|..+
T Consensus 401 wn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl 458 (635)
T PRK02888 401 WNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFL 458 (635)
T ss_pred EehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcccccccccc
Confidence 99652 234444433322211 23699999987 456443
No 386
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=68.67 E-value=5.1 Score=50.96 Aligned_cols=67 Identities=21% Similarity=0.219 Sum_probs=47.3
Q ss_pred EEEEeCCCeEEEEeCCCCeeEeeecCCccE-------------EEEEecCCEEEEeecCcEEEEEe--CCC----ceeee
Q 001123 433 IWTGGANGLLLQWDPNGNRLQDFQYLPFAV-------------QCLCTFGSQIWVGYMNGIVQVLD--LEG----NLLGG 493 (1149)
Q Consensus 433 laSgs~DgtIrlWD~tG~~l~tl~gH~~~V-------------~sls~dG~~LaSGs~DGtIrlWD--~~G----~~l~~ 493 (1149)
+..+-.+++|++-..+......+.+|..++ .++++||+.+|.++.||.++.|. ++| +|++.
T Consensus 198 ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhe 277 (1283)
T KOG1916|consen 198 ICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHE 277 (1283)
T ss_pred eeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhc
Confidence 344555677777666432224455565543 36678999999999999999999 456 47889
Q ss_pred eeccCC
Q 001123 494 WVAHSS 499 (1149)
Q Consensus 494 l~gH~~ 499 (1149)
|+-|.+
T Consensus 278 wkphd~ 283 (1283)
T KOG1916|consen 278 WKPHDK 283 (1283)
T ss_pred cCCCCC
Confidence 999983
No 387
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=68.23 E-value=2.9 Score=53.07 Aligned_cols=92 Identities=17% Similarity=0.229 Sum_probs=64.5
Q ss_pred CeEEEEeC---CCCeeEeeecC-----CccEEEE-----EecCCEEEEeecCcEEEEEeCCCceeeeeeccCCCeEEE--
Q 001123 440 GLLLQWDP---NGNRLQDFQYL-----PFAVQCL-----CTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKM-- 504 (1149)
Q Consensus 440 gtIrlWD~---tG~~l~tl~gH-----~~~V~sl-----s~dG~~LaSGs~DGtIrlWD~~G~~l~~l~gH~~~V~sL-- 504 (1149)
|...+||+ +|+..-.+.-| ...+.-| .+..-++..|-.+++|+|...+......+++|.-+++.+
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~ 232 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAF 232 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHH
Confidence 56778887 57654333222 2222222 234578888889999999987755557777898887754
Q ss_pred -----------EecCCeEEeecCCCceeeeeccCCCCC
Q 001123 505 -----------AVGAGYIFTLANHGGIRGWNVTSPGPL 531 (1149)
Q Consensus 505 -----------a~Dg~~LaSgS~DgtIRlWdl~sp~pl 531 (1149)
++||+.++.++.||.++.|.+.-.|-.
T Consensus 233 ~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~ 270 (1283)
T KOG1916|consen 233 FAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKI 270 (1283)
T ss_pred HhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccc
Confidence 369999999999999999998765544
No 388
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=68.08 E-value=93 Score=36.01 Aligned_cols=66 Identities=23% Similarity=0.386 Sum_probs=44.8
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecC----CCCEEEEEEeCCCcEEEEECCCcEEE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH----RGPVLSLCISSYGDLWSGSEGGGIKI 266 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH----~~~VtsVafSpdG~L~SGS~DgTIRV 266 (1149)
.+.+..+..++||++|+.++.-...+.||.... .|+-| ...|.+|.|+|++.||-....|.|+.
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~------------~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~ 211 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT------------TWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQF 211 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-S------------S-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCc------------cceEEccCccceehhceecCCCCEEEEeCCcEEEE
Confidence 567888889999999999888888889986431 23334 56899999999999887779999888
Q ss_pred Ee
Q 001123 267 WP 268 (1149)
Q Consensus 267 Wd 268 (1149)
=+
T Consensus 212 s~ 213 (302)
T PF14870_consen 212 SD 213 (302)
T ss_dssp EE
T ss_pred cc
Confidence 66
No 389
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.65 E-value=48 Score=44.54 Aligned_cols=68 Identities=16% Similarity=0.227 Sum_probs=49.8
Q ss_pred CCCceEEEEEcCCCcEEEEeCCCeEEEEeC--C---C---C-ee----------------Eeee-cCCccEEEEEecC--
Q 001123 418 DNRRTEALTTSIDGMIWTGGANGLLLQWDP--N---G---N-RL----------------QDFQ-YLPFAVQCLCTFG-- 469 (1149)
Q Consensus 418 ~~~~V~ava~s~Dg~laSgs~DgtIrlWD~--t---G---~-~l----------------~tl~-gH~~~V~sls~dG-- 469 (1149)
+...|.+++...+|+|.-|+.|| .||.+ + | + |- -.+. .+.++|..++.|.
T Consensus 177 dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred CCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 34567888888999999888888 56765 1 2 2 21 1122 4667899888874
Q ss_pred CEEEEeecCcEEEEEeCC
Q 001123 470 SQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 470 ~~LaSGs~DGtIrlWD~~ 487 (1149)
..|++=+..|+|++||++
T Consensus 255 ~IlY~lsek~~v~~Y~i~ 272 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIG 272 (1311)
T ss_pred ceeeeeccCceEEEEEcc
Confidence 688899999999999976
No 390
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=66.41 E-value=2.7e+02 Score=32.80 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=31.4
Q ss_pred EEEEEeCC-CceeeeeeccCCCeEEEE--ecCC-eEEee-cCCCceeeeeccCC
Q 001123 480 IVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAG-YIFTL-ANHGGIRGWNVTSP 528 (1149)
Q Consensus 480 tIrlWD~~-G~~l~~l~gH~~~V~sLa--~Dg~-~LaSg-S~DgtIRlWdl~sp 528 (1149)
.|.++|+. ++.+..+..- .++.+|+ .|.+ +|+.. ..++++.+||..+.
T Consensus 270 eVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp EEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred EEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 46666765 7788777631 2465666 3544 66555 46899999998874
No 391
>PRK13616 lipoprotein LpqB; Provisional
Probab=66.35 E-value=2.8e+02 Score=35.29 Aligned_cols=97 Identities=20% Similarity=0.181 Sum_probs=50.9
Q ss_pred ceEEEEEcCCCc-EEEEeCCCeEEEE---eC-CCC-ee---Eeeec-CCccEEEEEe-cCCEEEEeecCcEEEEEe--CC
Q 001123 421 RTEALTTSIDGM-IWTGGANGLLLQW---DP-NGN-RL---QDFQY-LPFAVQCLCT-FGSQIWVGYMNGIVQVLD--LE 487 (1149)
Q Consensus 421 ~V~ava~s~Dg~-laSgs~DgtIrlW---D~-tG~-~l---~tl~g-H~~~V~sls~-dG~~LaSGs~DGtIrlWD--~~ 487 (1149)
.|..+.+||||. |+.-. ++.|.+= .. .|+ .+ +.+.. -...+.++.+ .+..|+++..++.-.+|- ++
T Consensus 449 ~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vD 527 (591)
T PRK13616 449 PISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLD 527 (591)
T ss_pred CcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecC
Confidence 356677777776 43222 4555552 22 243 11 12222 2223456655 344466777766666776 45
Q ss_pred Cceeeeeec--cCCCeEEEEecCCeEEeecCCC
Q 001123 488 GNLLGGWVA--HSSPVIKMAVGAGYIFTLANHG 518 (1149)
Q Consensus 488 G~~l~~l~g--H~~~V~sLa~Dg~~LaSgS~Dg 518 (1149)
|.....+.+ ...+|.+|+.....|+-...++
T Consensus 528 G~~~~~~~~~n~~~~v~~vaa~~~~iyv~~~~g 560 (591)
T PRK13616 528 GSNSDALPSRNLSAPVVAVAASPSTVYVTDARA 560 (591)
T ss_pred CccccccCCCCccCceEEEecCCceEEEEcCCc
Confidence 654333344 3677888886555555444554
No 392
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=64.92 E-value=2.7e+02 Score=32.30 Aligned_cols=98 Identities=20% Similarity=0.269 Sum_probs=59.1
Q ss_pred CCCceEEEEEcCCCc-EEEEeC-CCeEEEEeCC---CC---e--eEeeecCCccEEEEEe--cCCEEEEeecCc-EEEEE
Q 001123 418 DNRRTEALTTSIDGM-IWTGGA-NGLLLQWDPN---GN---R--LQDFQYLPFAVQCLCT--FGSQIWVGYMNG-IVQVL 484 (1149)
Q Consensus 418 ~~~~V~ava~s~Dg~-laSgs~-DgtIrlWD~t---G~---~--l~tl~gH~~~V~sls~--dG~~LaSGs~DG-tIrlW 484 (1149)
+....+.+++|||++ ++.+.+ .+.|.-|+.. |. . ...+..+.+.--.++. +|.+-+++..+| .|.+|
T Consensus 161 ~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~ 240 (307)
T COG3386 161 DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRF 240 (307)
T ss_pred cEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEE
Confidence 345566799999996 555444 4777777663 31 1 1111112222223333 455443444443 99999
Q ss_pred eCCCceeeeeeccCCCeEEEEecC---CeEEeec
Q 001123 485 DLEGNLLGGWVAHSSPVIKMAVGA---GYIFTLA 515 (1149)
Q Consensus 485 D~~G~~l~~l~gH~~~V~sLa~Dg---~~LaSgS 515 (1149)
+.+|+++....-....+.++++.| +.|+..|
T Consensus 241 ~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 241 NPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCCCcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 999999988888777888888644 5555443
No 393
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=61.75 E-value=4.1 Score=50.09 Aligned_cols=76 Identities=14% Similarity=0.224 Sum_probs=54.1
Q ss_pred CCceEEEEEcC-CCCEEEEEe----CCCeEEEEECCCCCCCCCCCccceEEeec-CCCCEEEEEEeCCCc-EEEEECCCc
Q 001123 191 VSSVMCMVGDE-ASGVVWSGH----RDGRIMCWKMNARLLDSDDGFGEVLSWQA-HRGPVLSLCISSYGD-LWSGSEGGG 263 (1149)
Q Consensus 191 ~~~V~~lafs~-dg~~LaSGS----~DGtIRvWdl~~g~~~~~~~~~~~~~l~G-H~~~VtsVafSpdG~-L~SGS~DgT 263 (1149)
..+.+|+||++ |...||.|. .|..+++||+.++.. .| ++...|.+ -...+.++++-.+-+ +.+|..-+.
T Consensus 102 ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~lt---vP-ke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~ 177 (783)
T KOG1008|consen 102 ARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLT---VP-KESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRS 177 (783)
T ss_pred cccccccccccccHHHHHhhhhhhcccCCccceecccccC---CC-ccccccccccccCccccccccCcchhhcccccch
Confidence 67889999987 456777775 567899999988641 12 22333444 445677888887666 568988889
Q ss_pred EEEEeCC
Q 001123 264 IKIWPWE 270 (1149)
Q Consensus 264 IRVWdl~ 270 (1149)
|++.|+.
T Consensus 178 ~~ifdlR 184 (783)
T KOG1008|consen 178 VHIFDLR 184 (783)
T ss_pred hhhhhhh
Confidence 9999885
No 394
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=61.48 E-value=3.6e+02 Score=32.55 Aligned_cols=50 Identities=18% Similarity=0.084 Sum_probs=32.5
Q ss_pred ccEEEE--EecCCEEEEeecCcEEEEEeCC-Cceeeeeecc-CCCeEEEEecCC
Q 001123 460 FAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH-SSPVIKMAVGAG 509 (1149)
Q Consensus 460 ~~V~sl--s~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH-~~~V~sLa~Dg~ 509 (1149)
+++..+ +++|++||.-..+|++.+...+ .+.+..+.-. ......+++.|.
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence 456655 5689999999999999999865 4444444333 234455665443
No 395
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=61.25 E-value=2.4e+02 Score=32.45 Aligned_cols=104 Identities=22% Similarity=0.208 Sum_probs=67.6
Q ss_pred ceEEEEEcCCCcEEEEeCCCeEEEEeC-CCC-eeEe-eecCCccEEEEEecCCEEEEeecCcEEEEE--eCCCceeeeee
Q 001123 421 RTEALTTSIDGMIWTGGANGLLLQWDP-NGN-RLQD-FQYLPFAVQCLCTFGSQIWVGYMNGIVQVL--DLEGNLLGGWV 495 (1149)
Q Consensus 421 ~V~ava~s~Dg~laSgs~DgtIrlWD~-tG~-~l~t-l~gH~~~V~sls~dG~~LaSGs~DGtIrlW--D~~G~~l~~l~ 495 (1149)
.|.++..- +|+++.|. +++|.+|++ ..+ .+.. +......|.++...+.+|+.|+.-..|.++ +.+++.+..+.
T Consensus 90 ~V~ai~~~-~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va 167 (321)
T PF03178_consen 90 PVTAICSF-NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVA 167 (321)
T ss_dssp -EEEEEEE-TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEE
T ss_pred cceEhhhh-CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEE
Confidence 45566533 55655544 578999999 445 3332 222334788888889999999988878877 55454333332
Q ss_pred c--cCCCeEEEE-e-cCCeEEeecCCCceeeeecc
Q 001123 496 A--HSSPVIKMA-V-GAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 496 g--H~~~V~sLa-~-Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
. ..-+|+++. . |++.++.+..+|.+.++...
T Consensus 168 ~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 168 RDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 2 344567766 3 77788999999999998864
No 396
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=60.18 E-value=74 Score=38.86 Aligned_cols=132 Identities=11% Similarity=0.072 Sum_probs=65.2
Q ss_pred eeeeeeccccceEeecCCcEEEEeeccccc-CCCCceEEEEEcCCCcEEEEeCCCeEEEE-eCCCCeeEeeecCCccEEE
Q 001123 387 SSFGFFQRSRNAIMGAADAVRRVAAKGGFG-DDNRRTEALTTSIDGMIWTGGANGLLLQW-DPNGNRLQDFQYLPFAVQC 464 (1149)
Q Consensus 387 ~si~f~~~~~~~i~G~~d~v~rv~~~g~~~-~~~~~V~ava~s~Dg~laSgs~DgtIrlW-D~tG~~l~tl~gH~~~V~s 464 (1149)
+++.+.|.++.+++. .++-..+.+...+. ...+.-..++|...+..|+-..+++|+|. +.+.+....+.-. ..+..
T Consensus 36 ~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~ 113 (443)
T PF04053_consen 36 QSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEK 113 (443)
T ss_dssp SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----S-S-EEE
T ss_pred eeEEECCCCCEEEEE-cCCEEEEEEccCCcccccCceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcCC-cccce
Confidence 355666666666653 33333332211010 00111223556667788877778899996 4443332333221 23444
Q ss_pred EEecCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEEEEe--cCCeEEeecCCCceeeeec
Q 001123 465 LCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 465 ls~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa~--Dg~~LaSgS~DgtIRlWdl 525 (1149)
|.. |..|...+.+ .|.+||++ ++.++..... .|..|.+ +|++++-.+.| ++.+++-
T Consensus 114 If~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 114 IFG-GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp EE--SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred EEc-CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 433 8888887666 89999987 7888877643 3777764 67788777644 6666653
No 397
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=59.66 E-value=8.8 Score=37.32 Aligned_cols=71 Identities=15% Similarity=0.100 Sum_probs=38.2
Q ss_pred ccceeEEEEEEecCCeeeEEEEEeecCCccccC---CCCCCCCCCCCCCCCCCCeEEecCceeeCCCCeeEEEEEEee
Q 001123 979 QNQDTSILRVTNKCGKKDAFYQINCEGQSTVKD---DGQASDRHPRGSFGFPRWLEVTPATGMIKPDRTAEMSVHHED 1053 (1149)
Q Consensus 979 ~~~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~Wl~v~p~~g~i~p~~~~~i~~~~~~ 1053 (1149)
++.....|+|+|.|.. ...|.+-..+-.+... +|......+.. ...+....|..-.|.||++.+|++++.-
T Consensus 7 ~~~~~~~itl~N~~~~-~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~---~~~~~~~~~~~vTV~ag~s~~v~vti~~ 80 (112)
T PF06280_consen 7 GNKFSFTITLHNYGDK-PVTYTLSHVPVLTDKTDTEEGYSILVPPVP---SISTVSFSPDTVTVPAGQSKTVTVTITP 80 (112)
T ss_dssp -SEEEEEEEEEE-SSS--EEEEEEEE-EEEEEE--ETTEEEEEEEE-------EEE---EEEEE-TTEEEEEEEEEE-
T ss_pred CCceEEEEEEEECCCC-CEEEEEeeEEEEeeEeeccCCccccccccc---ceeeEEeCCCeEEECCCCEEEEEEEEEe
Confidence 4456778999999997 8899887652222221 11110000000 0016777888889999999999999765
No 398
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=57.73 E-value=48 Score=40.01 Aligned_cols=81 Identities=17% Similarity=0.135 Sum_probs=54.6
Q ss_pred ccCCCCceEEEEEcCCCcEEEEeCC-CeEEEEeC-CCCeeEeeecCCccEEEE----EecC----------------CE-
Q 001123 415 FGDDNRRTEALTTSIDGMIWTGGAN-GLLLQWDP-NGNRLQDFQYLPFAVQCL----CTFG----------------SQ- 471 (1149)
Q Consensus 415 ~~~~~~~V~ava~s~Dg~laSgs~D-gtIrlWD~-tG~~l~tl~gH~~~V~sl----s~dG----------------~~- 471 (1149)
|.+....+..+..+|++++|+.+.+ |-|.|+|+ ++..++.++|..++=... .... .+
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 4555667889999999998766543 78999999 889999999876542222 1111 12
Q ss_pred EEEeecCcEEEEEeCC-Cceeeeee
Q 001123 472 IWVGYMNGIVQVLDLE-GNLLGGWV 495 (1149)
Q Consensus 472 LaSGs~DGtIrlWD~~-G~~l~~l~ 495 (1149)
++=+-.-|.|.||.+. |..+..+.
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEE
Confidence 2234467888999864 76665543
No 399
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=57.40 E-value=24 Score=29.13 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=25.9
Q ss_pred CCCEEEEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 241 RGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 241 ~~~VtsVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
...|.+++++|... |+.|+.||.|.|+.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 45799999999988 578999999999998
No 400
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=56.47 E-value=42 Score=27.24 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=17.5
Q ss_pred eEEecCceeeCCCCeeEEEEE
Q 001123 1030 LEVTPATGMIKPDRTAEMSVH 1050 (1149)
Q Consensus 1030 l~v~p~~g~i~p~~~~~i~~~ 1050 (1149)
+.++.....|.|||+..|+++
T Consensus 24 t~~~~~~~~i~PGes~~i~v~ 44 (45)
T PF07610_consen 24 TTAEYSKKPIAPGESGKIKVT 44 (45)
T ss_pred EEeeCCcceECCCCEEEEEEE
Confidence 467777788999999999875
No 401
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=56.17 E-value=64 Score=31.62 Aligned_cols=67 Identities=21% Similarity=0.261 Sum_probs=46.4
Q ss_pred EeecCcEEecc-ceeEEEEEEecCCeeeEEEEEeecCCccccCCCCCCCCCCCCCCCCCCCeEEecCceeeCCCCeeEEE
Q 001123 970 IVSTNNIIIQN-QDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIKPDRTAEMS 1048 (1149)
Q Consensus 970 ~~~~~~i~~~~-~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wl~v~p~~g~i~p~~~~~i~ 1048 (1149)
.+++..|.|.. .....++|.|++.. +..++.--. +.++ .+. .. --+-|-|+|..-.|+||++..|.
T Consensus 3 ~i~~trii~~~~~~~~~i~v~N~~~~-~~~vq~~v~-----~~~~--~~~----~~-~~~~~~vsPp~~~L~pg~~q~vR 69 (122)
T PF00345_consen 3 QISPTRIIFNESQRSASITVTNNSDQ-PYLVQVWVY-----DQDD--EDE----DE-PTDPFIVSPPIFRLEPGESQTVR 69 (122)
T ss_dssp EESSSEEEEETTSSEEEEEEEESSSS-EEEEEEEEE-----ETTS--TTS----SS-SSSSEEEESSEEEEETTEEEEEE
T ss_pred EEccEEEEEeCCCCEEEEEEEcCCCC-cEEEEEEEE-----cCCC--ccc----cc-ccccEEEeCCceEeCCCCcEEEE
Confidence 46677777775 45678999999996 777776542 1101 000 00 01357899999999999999999
Q ss_pred E
Q 001123 1049 V 1049 (1149)
Q Consensus 1049 ~ 1049 (1149)
|
T Consensus 70 v 70 (122)
T PF00345_consen 70 V 70 (122)
T ss_dssp E
T ss_pred E
Confidence 9
No 402
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=54.42 E-value=5.1 Score=49.29 Aligned_cols=125 Identities=16% Similarity=0.145 Sum_probs=73.8
Q ss_pred CCCCceEEEEEcCC-Cc-EEEEeC----CCeEEEEeC-CC--CeeEe--eec-CCccEEEEEe--cCCEEEEeecCcEEE
Q 001123 417 DDNRRTEALTTSID-GM-IWTGGA----NGLLLQWDP-NG--NRLQD--FQY-LPFAVQCLCT--FGSQIWVGYMNGIVQ 482 (1149)
Q Consensus 417 ~~~~~V~ava~s~D-g~-laSgs~----DgtIrlWD~-tG--~~l~t--l~g-H~~~V~sls~--dG~~LaSGs~DGtIr 482 (1149)
++....+++++++- .. ||+|-. |..+.|||+ ++ .+..+ |.+ --...+++++ +-+.+.+|.....+.
T Consensus 100 ~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ 179 (783)
T KOG1008|consen 100 GYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVH 179 (783)
T ss_pred cccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhh
Confidence 44455666776654 33 444432 567999999 44 22211 111 1223446665 578999999999999
Q ss_pred EEeCCCceeeeeeccCCCeEEEE--e-cCCeEEeecCCCceeeeeccCCCCCchhhhhhcccccc
Q 001123 483 VLDLEGNLLGGWVAHSSPVIKMA--V-GAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEF 544 (1149)
Q Consensus 483 lWD~~G~~l~~l~gH~~~V~sLa--~-Dg~~LaSgS~DgtIRlWdl~sp~pld~~i~~~l~~re~ 544 (1149)
++|+...+...-.-.+..|..+. + .+.|+++-+ |+.|-+||. +--++..++..+.....
T Consensus 180 ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~--~rnienpl~~i~~~~N~ 241 (783)
T KOG1008|consen 180 IFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDT--YRNIENPLQIILRNENK 241 (783)
T ss_pred hhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccc--hhhhccHHHHHhhCCCC
Confidence 99976443222222223333443 3 678888766 999999994 34456666655544433
No 403
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=52.85 E-value=11 Score=47.73 Aligned_cols=69 Identities=19% Similarity=0.254 Sum_probs=58.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEe-ecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCC
Q 001123 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (1149)
Q Consensus 194 V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l-~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t 271 (1149)
+.+|.|.|..-.||+|..-|.+-+|...+.. ..+. .-|..+|..+.||++|. |+|+-.=|.|.+|....
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e---------~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE---------THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCce---------eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 3558899999999999999999999987632 3333 45999999999999998 89999999999999863
No 404
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=52.02 E-value=34 Score=42.62 Aligned_cols=34 Identities=12% Similarity=0.245 Sum_probs=25.7
Q ss_pred CceEEEEEcC----CCCEEEEEeCCCeEEEEECCCCCC
Q 001123 192 SSVMCMVGDE----ASGVVWSGHRDGRIMCWKMNARLL 225 (1149)
Q Consensus 192 ~~V~~lafs~----dg~~LaSGS~DGtIRvWdl~~g~~ 225 (1149)
+.+.+++++. +..+|++-+.|+++|+||+.++.|
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 3455566665 678999999999999999999886
No 405
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=51.76 E-value=4.5e+02 Score=30.72 Aligned_cols=64 Identities=6% Similarity=-0.018 Sum_probs=42.1
Q ss_pred cCCCCEEEEE---------eCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCC
Q 001123 200 DEASGVVWSG---------HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (1149)
Q Consensus 200 s~dg~~LaSG---------S~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~ 270 (1149)
|||++.++-. +..+.+-++|++++. ...+......+....+||+|+.+.--.|+.|.+++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~---------~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~ 71 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGE---------ITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLA 71 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTE---------EEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESST
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCc---------eEECcCCccccccceeecCCCeeEEEecCceEEEECC
Confidence 4566555442 345678899999864 3333322678889999999985444457889999987
Q ss_pred Cc
Q 001123 271 AI 272 (1149)
Q Consensus 271 t~ 272 (1149)
++
T Consensus 72 ~~ 73 (353)
T PF00930_consen 72 TG 73 (353)
T ss_dssp TS
T ss_pred CC
Confidence 65
No 406
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=51.14 E-value=40 Score=40.89 Aligned_cols=99 Identities=20% Similarity=0.282 Sum_probs=57.4
Q ss_pred EEEcCCCc-E-EEEeCCCeEEEE--eCCCCeeEeeecCCcc---EEEEEecCCEEEEee-cCcE--EEEEeCCCce--ee
Q 001123 425 LTTSIDGM-I-WTGGANGLLLQW--DPNGNRLQDFQYLPFA---VQCLCTFGSQIWVGY-MNGI--VQVLDLEGNL--LG 492 (1149)
Q Consensus 425 va~s~Dg~-l-aSgs~DgtIrlW--D~tG~~l~tl~gH~~~---V~sls~dG~~LaSGs-~DGt--IrlWD~~G~~--l~ 492 (1149)
-.|+|||. | .+...||...|| |+.++.+..++. ... -.++++||++|+-.+ ..|. |.+.|.+|.- ..
T Consensus 243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~-~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri 321 (425)
T COG0823 243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTN-GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL 321 (425)
T ss_pred ccCCCCCCEEEEEECCCCCccEEEEcCCCCcceeccc-CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe
Confidence 45899987 4 466667765555 555554544443 222 336678999887665 3454 5555677653 33
Q ss_pred eeeccCCCeEEEEecCCeEEeecCCCceeeeecc
Q 001123 493 GWVAHSSPVIKMAVGAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 493 ~l~gH~~~V~sLa~Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
++.+-....-.+.+||++|+-.+..+.- |++.
T Consensus 322 T~~~~~~~~p~~SpdG~~i~~~~~~~g~--~~i~ 353 (425)
T COG0823 322 TFSGGGNSNPVWSPDGDKIVFESSSGGQ--WDID 353 (425)
T ss_pred eccCCCCcCccCCCCCCEEEEEeccCCc--eeeE
Confidence 3333333344456899998876643222 6654
No 407
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=49.89 E-value=4.8e+02 Score=30.42 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=45.3
Q ss_pred EEEeCCCeEEEEeCCCCeeEeeecCCccEE---EE--E------ecCCEEEEeecCcEEEEEeC-CCceeeeeeccCC
Q 001123 434 WTGGANGLLLQWDPNGNRLQDFQYLPFAVQ---CL--C------TFGSQIWVGYMNGIVQVLDL-EGNLLGGWVAHSS 499 (1149)
Q Consensus 434 aSgs~DgtIrlWD~tG~~l~tl~gH~~~V~---sl--s------~dG~~LaSGs~DGtIrlWD~-~G~~l~~l~gH~~ 499 (1149)
+.|..-|.|-++|.+|+.++.+. +....+ .| + +.|..|+----||+|-.+|. +|+.+..+..-.+
T Consensus 216 v~G~G~G~VdvFd~~G~l~~r~a-s~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G 292 (336)
T TIGR03118 216 VAGAGLGYVNVFTLNGQLLRRVA-SSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDN 292 (336)
T ss_pred ccCCCcceEEEEcCCCcEEEEec-cCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCC
Confidence 34556689999999999999884 233322 33 2 24677776667999999996 4887776665443
No 408
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=48.58 E-value=64 Score=35.48 Aligned_cols=69 Identities=10% Similarity=0.112 Sum_probs=48.0
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCCCCCC-CccceEEee-------cCCCCEEEEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 199 GDEASGVVWSGHRDGRIMCWKMNARLLDSDD-GFGEVLSWQ-------AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 199 fs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~-~~~~~~~l~-------GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
+...+.+|..-..+|.+.+||+.++.+.-.. .+.++ +. .....|.++.++.+|. |++-| +|....|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pl--l~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPL--LNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHH--hcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 3446788999999999999999987641111 11111 22 4567899999999998 66665 467888886
Q ss_pred C
Q 001123 270 E 270 (1149)
Q Consensus 270 ~ 270 (1149)
+
T Consensus 95 ~ 95 (219)
T PF07569_consen 95 D 95 (219)
T ss_pred c
Confidence 3
No 409
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=46.52 E-value=78 Score=34.80 Aligned_cols=75 Identities=17% Similarity=0.168 Sum_probs=49.3
Q ss_pred eEEEEEeeCCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceee------eecCCceEEEEEcCCCCEE
Q 001123 134 FLRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKES------VKGVSSVMCMVGDEASGVV 206 (1149)
Q Consensus 134 ~l~~l~~~~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s------~~G~~~V~~lafs~dg~~L 206 (1149)
.+..|.+.+..+.+ ..+|.+++||+++++..-.. ..-+|+... .. ...|..+.++.+|.-|
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~-----------~Si~pll~~~~~~~~~~-~~~i~~~~lt~~G~Pi 81 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPP-----------VSIAPLLNSSPVSDKSS-SPNITSCSLTSNGVPI 81 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCC-----------ccHHHHhcccccccCCC-CCcEEEEEEcCCCCEE
Confidence 44457788888876 78999999999988765430 011122110 11 5678888888888777
Q ss_pred EEEeCCCeEEEEECC
Q 001123 207 WSGHRDGRIMCWKMN 221 (1149)
Q Consensus 207 aSGS~DGtIRvWdl~ 221 (1149)
++=+ +|..-.|+.+
T Consensus 82 V~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 82 VTLS-NGDSYSYSPD 95 (219)
T ss_pred EEEe-CCCEEEeccc
Confidence 7644 5777888765
No 410
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=45.85 E-value=93 Score=37.41 Aligned_cols=70 Identities=21% Similarity=0.194 Sum_probs=47.8
Q ss_pred CCCCceEEEEEcCCCcEEEEeCCCeEEEEeCCC-CeeEe--eec------CCccEEEEEe-------cC---CEEEEeec
Q 001123 417 DDNRRTEALTTSIDGMIWTGGANGLLLQWDPNG-NRLQD--FQY------LPFAVQCLCT-------FG---SQIWVGYM 477 (1149)
Q Consensus 417 ~~~~~V~ava~s~Dg~laSgs~DgtIrlWD~tG-~~l~t--l~g------H~~~V~sls~-------dG---~~LaSGs~ 477 (1149)
.....|.+++.|+=|.+|.|+++|++.|-|+.| ..|.+ +.. ....|.++.| |+ -+|++|.+
T Consensus 84 ~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn 163 (395)
T PF08596_consen 84 AKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTN 163 (395)
T ss_dssp --S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEET
T ss_pred ccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeC
Confidence 346789999999889999999999999999987 33333 222 2235666644 23 48888998
Q ss_pred CcEEEEEeC
Q 001123 478 NGIVQVLDL 486 (1149)
Q Consensus 478 DGtIrlWD~ 486 (1149)
.|.+.+|.+
T Consensus 164 ~G~v~~fkI 172 (395)
T PF08596_consen 164 SGNVLTFKI 172 (395)
T ss_dssp TSEEEEEEE
T ss_pred CCCEEEEEE
Confidence 899988874
No 411
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=44.77 E-value=59 Score=26.52 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=26.0
Q ss_pred CceEEEEEcCCCC---EEEEEeCCCeEEEEECCCC
Q 001123 192 SSVMCMVGDEASG---VVWSGHRDGRIMCWKMNAR 223 (1149)
Q Consensus 192 ~~V~~lafs~dg~---~LaSGS~DGtIRvWdl~~g 223 (1149)
++|-|+.|||++. +|+-+-.-|.|.++|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4688999998644 8888788889999999853
No 412
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=44.12 E-value=2.8e+02 Score=34.12 Aligned_cols=63 Identities=21% Similarity=0.225 Sum_probs=47.1
Q ss_pred EEEEcCCCcEEEEeCCCeEEEEeCCCCe-eEeeecCCccEEEE--EecCCEEEEeecCcEEEEEeCC
Q 001123 424 ALTTSIDGMIWTGGANGLLLQWDPNGNR-LQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 424 ava~s~Dg~laSgs~DgtIrlWD~tG~~-l~tl~gH~~~V~sl--s~dG~~LaSGs~DGtIrlWD~~ 487 (1149)
+.+....|.||.||.-|-||++|.-|.. ...+.+-..+|.-| +.+|++|++.|.. +|-|-|+.
T Consensus 567 s~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 567 SGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred ccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 4456678899999999999999996643 33455556677755 5589999887765 78888864
No 413
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=40.12 E-value=2e+02 Score=34.90 Aligned_cols=79 Identities=10% Similarity=0.127 Sum_probs=54.5
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEE----EEeCC-----------C--
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSL----CISSY-----------G-- 253 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsV----afSpd-----------G-- 253 (1149)
...+.++..+|++++.|....=|.|.++|+.++.. ++.|+|-+++=.+= .-... .
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v--------vrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV--------VRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF 378 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh--------hhhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence 45688999999999999988889999999988652 55677766542211 11110 0
Q ss_pred -c-E-EEEECCCcEEEEeCCCcceeee
Q 001123 254 -D-L-WSGSEGGGIKIWPWEAIEKALS 277 (1149)
Q Consensus 254 -~-L-~SGS~DgTIRVWdl~t~~~~~~ 277 (1149)
. | +=+-.-|.|.||.++++.+...
T Consensus 379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a 405 (415)
T PF14655_consen 379 ALFLVIYAPRRGILEVWSMRQGPRVAA 405 (415)
T ss_pred eEEEEEEeccCCeEEEEecCCCCEEEE
Confidence 1 2 2456789999999988765443
No 414
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=38.19 E-value=1.1e+03 Score=31.16 Aligned_cols=68 Identities=12% Similarity=0.111 Sum_probs=42.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEE-------------EEEEeC---CCcEEEEEC-----
Q 001123 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVL-------------SLCISS---YGDLWSGSE----- 260 (1149)
Q Consensus 202 dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~Vt-------------sVafSp---dG~L~SGS~----- 260 (1149)
.+++|+.++.|+.+..-|.++|+. +..+ ++.+.|. .+.-+| ++.++.|+.
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TGk~--------~W~f-g~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~ 329 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTGKL--------CEDF-GNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNY 329 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCCCE--------EEEe-cCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccc
Confidence 356788888999999999888762 3332 2222221 111111 455665543
Q ss_pred -----CCcEEEEeCCCcceeeec
Q 001123 261 -----GGGIKIWPWEAIEKALSL 278 (1149)
Q Consensus 261 -----DgTIRVWdl~t~~~~~~l 278 (1149)
+|.|+-.|++||+..-.+
T Consensus 330 ~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 330 STDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred cccCCCcEEEEEECCCCcEeeEE
Confidence 689999999999876554
No 415
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=37.20 E-value=5.1e+02 Score=29.07 Aligned_cols=100 Identities=13% Similarity=0.012 Sum_probs=52.8
Q ss_pred CEEEEEEeCCCc--EEEEECCCcEEEEe--CCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEE
Q 001123 243 PVLSLCISSYGD--LWSGSEGGGIKIWP--WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL 318 (1149)
Q Consensus 243 ~VtsVafSpdG~--L~SGS~DgTIRVWd--l~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~la 318 (1149)
.=++++|+.+.+ .+.-|.+-+|.-|| ..+|..+- . +..++++...+... +-.+..+
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~sn-------r-------~~i~dlrk~~~~e~----~~PDGm~-- 218 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN-------R-------KVIFDLRKSQPFES----LEPDGMT-- 218 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccC-------c-------ceeEEeccCCCcCC----CCCCcce--
Confidence 334566776665 35888899999999 44443210 0 11122222110000 1122222
Q ss_pred EcCCCCE-EEEecCCceEEEEcCCccEEEEEecCCceeeEEeecc
Q 001123 319 SDHSRAK-VWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSL 362 (1149)
Q Consensus 319 s~~~~~~-v~Sasd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~ 362 (1149)
.+..|.+ |++-+.++|.-.|..||++|+.+......+.+..|-+
T Consensus 219 ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 219 IDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred EccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 2333332 2233456789999999999999876554444555443
No 416
>KOG3870 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.97 E-value=14 Score=43.41 Aligned_cols=18 Identities=50% Similarity=0.968 Sum_probs=15.7
Q ss_pred cccCccEEEEECccCCCC
Q 001123 792 ELSEADMVIFLGDFNYRL 809 (1149)
Q Consensus 792 ~i~~~D~vfw~GDlNyRi 809 (1149)
.+..+++|||=||||||=
T Consensus 348 ~L~~S~LvIFKGDLNYRK 365 (434)
T KOG3870|consen 348 DLQKSSLVIFKGDLNYRK 365 (434)
T ss_pred HHhhCcEEEEeccccHHH
Confidence 356889999999999994
No 417
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=35.60 E-value=1.1e+02 Score=36.99 Aligned_cols=102 Identities=14% Similarity=0.147 Sum_probs=56.9
Q ss_pred EeecCcEEeccceeEEEEEEecCCeeeEEEEEeecCCccccCCCCCCCCCCCCCCCCCCCeEEecCceeeCCCCeeEEEE
Q 001123 970 IVSTNNIIIQNQDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIKPDRTAEMSV 1049 (1149)
Q Consensus 970 ~~~~~~i~~~~~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wl~v~p~~g~i~p~~~~~i~~ 1049 (1149)
.+.+..-.++.....+++|.|+|.+ ...|+-...... +..+.. ........-.+...|.|.|||+..+.|
T Consensus 238 ~l~Fe~~p~e~~~~~v~~l~N~Gt~-~I~y~W~~~~~~--~~~~~~-------~~~~~~~F~Fd~~~gvilPGe~~~~~~ 307 (426)
T PF14646_consen 238 RLTFECHPGERVSKEVVRLENNGTT-AIYYSWRRVPFF--KNFGSL-------FRAQDQRFYFDTSSGVILPGETRNFPF 307 (426)
T ss_pred EEEEEcccCceeeEEEEEEecCCce-EEEEEEEecccc--cccchh-------ccccCCeEEEeCCCCEECCCceEEEEE
Confidence 3333333344344444449999987 677776532210 110100 111345677888999999999999999
Q ss_pred EEeeccchhhhhcCCCCCCcccCcCcc---eeEEEEEEEec
Q 001123 1050 HHEDFQTLEEFVDGVPQNWWCEDTRDQ---EVVLVLKVRGR 1087 (1149)
Q Consensus 1050 ~~~~~~~~~~~~~g~~~~~~~~~~~~~---e~~Lvl~v~~~ 1087 (1149)
..-.. .-||-.-.|.-.+.-- -..|.|++.|-
T Consensus 308 ~F~s~------~~Gif~E~W~L~t~P~l~~~~~l~v~L~G~ 342 (426)
T PF14646_consen 308 MFKSR------KVGIFKERWELRTFPPLFGGASLTVRLHGV 342 (426)
T ss_pred EEeCC------CceEEEEEEEEEEeccccCCCceEEEEEEE
Confidence 85321 2233333344444322 35577777775
No 418
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=35.45 E-value=8.7e+02 Score=29.30 Aligned_cols=130 Identities=14% Similarity=0.139 Sum_probs=76.3
Q ss_pred ccccceEeecCCcEEEEeecc-cc-----cCCCCceEEEEEcCCCcEEEEeCCCeEEEEeC-CCC-----eeEeeecC--
Q 001123 393 QRSRNAIMGAADAVRRVAAKG-GF-----GDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGN-----RLQDFQYL-- 458 (1149)
Q Consensus 393 ~~~~~~i~G~~d~v~rv~~~g-~~-----~~~~~~V~ava~s~Dg~laSgs~DgtIrlWD~-tG~-----~l~tl~gH-- 458 (1149)
+++..++.|..+.+.+.++.+ .+ ......+.++.+.++|.++.++.+|.+ +|.. .|+ ....+...
T Consensus 248 ~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l-~~S~d~G~~~~~~~f~~~~~~~~ 326 (398)
T PLN00033 248 PDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGL-YVSKGTGLTEEDFDFEEADIKSR 326 (398)
T ss_pred CCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceE-EEecCCCCcccccceeecccCCC
Confidence 344455666655555544432 11 222346778888999998888888875 4555 554 23333221
Q ss_pred CccEEEEEe-cCCEEEEeecCcEEEEEeCCCceeeee---eccCCCeEEEEe-cCCeEEeecCCCceeee
Q 001123 459 PFAVQCLCT-FGSQIWVGYMNGIVQVLDLEGNLLGGW---VAHSSPVIKMAV-GAGYIFTLANHGGIRGW 523 (1149)
Q Consensus 459 ~~~V~sls~-dG~~LaSGs~DGtIrlWD~~G~~l~~l---~gH~~~V~sLa~-Dg~~LaSgS~DgtIRlW 523 (1149)
...++++.+ +.+.++.++..|.|....-.|+.=... ..=....+.+.+ +.+..+..+.+|.|--|
T Consensus 327 ~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 327 GFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred CcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 234777765 455667777889888877556531111 222345778874 55666667778876544
No 419
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=35.06 E-value=4.1e+02 Score=34.04 Aligned_cols=93 Identities=11% Similarity=0.100 Sum_probs=59.1
Q ss_pred cCCEEEEeecCcEEEEEeCC-Ccee--eeeeccCCCeEEEE----ecCCeEEeecCCCceeeeeccCCCCCchhhhhhcc
Q 001123 468 FGSQIWVGYMNGIVQVLDLE-GNLL--GGWVAHSSPVIKMA----VGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELA 540 (1149)
Q Consensus 468 dG~~LaSGs~DGtIrlWD~~-G~~l--~~l~gH~~~V~sLa----~Dg~~LaSgS~DgtIRlWdl~sp~pld~~i~~~l~ 540 (1149)
.++..++-+...++.|||.. +.+. ..| .+.+.|..+. +||+.+++.|-.+.|.++.-.
T Consensus 40 ~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~-------------- 104 (631)
T PF12234_consen 40 IKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL-------------- 104 (631)
T ss_pred cCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEcc--------------
Confidence 35555555556789999976 4432 334 4567888886 599999999999999987521
Q ss_pred ccccceeeeeceEEEEEEEEeCCCCCCchhhcccccC
Q 001123 541 GKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGS 577 (1149)
Q Consensus 541 ~re~~yt~~~~~~i~v~TWNv~~~~~~~~~l~~wl~~ 577 (1149)
...|+...+-...+-..++....|.+-.=.-|+..
T Consensus 105 --R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~ 139 (631)
T PF12234_consen 105 --RYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKD 139 (631)
T ss_pred --chhhhcCCcccceeEEEEeecCCCCCccceeEecC
Confidence 14455544445555666666555433222348863
No 420
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=34.31 E-value=4e+02 Score=34.09 Aligned_cols=102 Identities=12% Similarity=0.147 Sum_probs=64.8
Q ss_pred eCCCC-EEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEc--CCCCEEEEEeCCCeEEEEECCCCC
Q 001123 148 GGENG-LRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGD--EASGVVWSGHRDGRIMCWKMNARL 224 (1149)
Q Consensus 148 g~D~t-VrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs--~dg~~LaSGS~DGtIRvWdl~~g~ 224 (1149)
.++++ +.+||...+... +.+.+...+.|..+.|. |+|+.|.+-+..+.|.++.--.-.
T Consensus 47 ~~~~~~LtIWD~~~~~lE-------------------~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 47 DSSRSELTIWDTRSGVLE-------------------YEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred ECCCCEEEEEEcCCcEEE-------------------EeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 34444 999998765522 22222115688888775 789999999999999998632100
Q ss_pred -CCCCCCccceE--EeecCC-CCEEEEEEeCCCcEEEEECCCcEEEEeC
Q 001123 225 -LDSDDGFGEVL--SWQAHR-GPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (1149)
Q Consensus 225 -~~~~~~~~~~~--~l~GH~-~~VtsVafSpdG~L~SGS~DgTIRVWdl 269 (1149)
....+....+. ....|+ .+|.+.++-++|.|+.|+ +..+.|.|-
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDK 155 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECC
Confidence 00011122222 245676 689999999999977665 466777764
No 421
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=33.92 E-value=1.7e+02 Score=37.65 Aligned_cols=170 Identities=13% Similarity=0.143 Sum_probs=90.9
Q ss_pred chhcccCCcCcccccccccccCCCCCc--cccCCCCcccccc-c------eeEEEEEee---CCeE--EEeCCCCEEEEe
Q 001123 92 EYIGKGGDIPMFKPPVRAALHPARPPS--LEVKPHPLRETQI-G------CFLRTIVCT---EEQL--WAGGENGLRVWN 157 (1149)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~p~~--l~~~~~pl~e~~~-~------~~l~~l~~~---~~~l--~ag~D~tVrvWd 157 (1149)
-||+.++..-||++. .-.-.|.+.|+ +.+.|.....++. + ..+..+... +..+ .+..||.|-+|-
T Consensus 52 LFiA~~s~I~Vy~~d-~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yy 130 (717)
T PF08728_consen 52 LFIAYQSEIYVYDPD-GLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLAYY 130 (717)
T ss_pred EEEEECCEEEEEecC-CcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEEEE
Confidence 577888887787742 22222433333 3333333333221 1 112222221 3333 235688899998
Q ss_pred CCCCCCCCccccccccCCCCCCCCCC-ceeeeecCCceEEEEEc--CCCCEEEEEeCCCeEEEEECCCCCCCCCCCccce
Q 001123 158 LKELYDESESDSVSVSKSKGEDGTAP-FKESVKGVSSVMCMVGD--EASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEV 234 (1149)
Q Consensus 158 ~~~g~~~~~~~~~~~~~~~~d~~~~~-~~~s~~G~~~V~~lafs--~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~ 234 (1149)
+++....-.-...............| |...+ ..++..|++. ...++||-++.-..|-||-..... ..+...
T Consensus 131 t~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v--~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~----~r~~~~ 204 (717)
T PF08728_consen 131 TETIIEAIERFSEDNDSGFSRLKIKPFFHLRV--GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVD----ERFYHV 204 (717)
T ss_pred HHHHHHHHHhhccccccccccccCCCCeEeec--CCceeEEEEEecCcceEEEEecCCceEEEEEEeccc----cccccc
Confidence 86533110000000000000012223 33333 3578889998 788999999999999999765421 011111
Q ss_pred EEeecCCCCEEEEEEeCCC-------cEEEEECCCcEEEEeC
Q 001123 235 LSWQAHRGPVLSLCISSYG-------DLWSGSEGGGIKIWPW 269 (1149)
Q Consensus 235 ~~l~GH~~~VtsVafSpdG-------~L~SGS~DgTIRVWdl 269 (1149)
.. ..|..-|-+|+|-++. .|++++-.|.+-+|++
T Consensus 205 ~s-~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 205 PS-HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cc-cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 11 1256789999997653 2678999999998887
No 422
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=33.85 E-value=5.2e+02 Score=31.58 Aligned_cols=20 Identities=35% Similarity=0.707 Sum_probs=16.4
Q ss_pred CceEEEEcCCccEEEEEecC
Q 001123 332 LSFALWDARTRELLKVFNID 351 (1149)
Q Consensus 332 ~tIrLWD~~TG~~L~~l~~~ 351 (1149)
.++.+||.++.+.++++...
T Consensus 222 ~~l~vWD~~~r~~~Q~idLg 241 (461)
T PF05694_consen 222 HSLHVWDWSTRKLLQTIDLG 241 (461)
T ss_dssp -EEEEEETTTTEEEEEEES-
T ss_pred CeEEEEECCCCcEeeEEecC
Confidence 57999999999999998653
No 423
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=32.74 E-value=5.9e+02 Score=33.25 Aligned_cols=78 Identities=6% Similarity=0.056 Sum_probs=50.8
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEE-----EECCCCCCCCCCCccceEEe--------ecCCCCEEEEEEeCCC----cE
Q 001123 193 SVMCMVGDEASGVVWSGHRDGRIMC-----WKMNARLLDSDDGFGEVLSW--------QAHRGPVLSLCISSYG----DL 255 (1149)
Q Consensus 193 ~V~~lafs~dg~~LaSGS~DGtIRv-----Wdl~~g~~~~~~~~~~~~~l--------~GH~~~VtsVafSpdG----~L 255 (1149)
.|.-+.++++|++||-.+..|.+.+ |-..+ ..++...-..+.+. .++...|..+.|+|.+ .|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~-~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNG-EFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccc-cccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 4778999999999998888776654 32111 10011110112221 2446789999999975 27
Q ss_pred EEEECCCcEEEEeCCC
Q 001123 256 WSGSEGGGIKIWPWEA 271 (1149)
Q Consensus 256 ~SGS~DgTIRVWdl~t 271 (1149)
+-=..|+++|++|+..
T Consensus 165 ~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEecCCEEEEEecCC
Confidence 7777899999999954
No 424
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=31.94 E-value=55 Score=40.84 Aligned_cols=29 Identities=21% Similarity=0.333 Sum_probs=23.9
Q ss_pred CCCcEEEEeCCCeEEEEeC-CCCeeEeeec
Q 001123 429 IDGMIWTGGANGLLLQWDP-NGNRLQDFQY 457 (1149)
Q Consensus 429 ~Dg~laSgs~DgtIrlWD~-tG~~l~tl~g 457 (1149)
.+..+++-+.|+++|+||+ +++|+.++.-
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEEET
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEecc
Confidence 4556889999999999999 7899777644
No 425
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.12 E-value=32 Score=39.64 Aligned_cols=43 Identities=14% Similarity=0.046 Sum_probs=26.6
Q ss_pred cCcceeEEEEEEe-ceEEEEeeeccccc-chhHHHHHHHHHHHHHh
Q 001123 675 GNKGAVGLRVRVY-DRIMCFVNCHFAAH-LEAVNRRNADFDHVYRT 718 (1149)
Q Consensus 675 gNKGaV~ir~~~~-~t~lcFVn~HLaA~-~~~~~~Rn~d~~~I~~~ 718 (1149)
+-||+.+...... ++.+..+|.|.--. -..-..| ++..++.+.
T Consensus 173 ~pk~~~~t~~~~~~g~~l~v~~lh~~~~~~~~~~~~-~ql~~l~~~ 217 (309)
T COG3021 173 LPKSALATAYPLPDGTELTVVALHAVNFPVGTDPQR-AQLLELGDQ 217 (309)
T ss_pred CCccceeEEEEcCCCCEEEEEeeccccccCCccHHH-HHHHHHHHH
Confidence 4788888877665 57899999998732 1122223 455555444
No 426
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=30.45 E-value=8.6e+02 Score=27.72 Aligned_cols=102 Identities=17% Similarity=0.213 Sum_probs=61.1
Q ss_pred eEEEEEcCCCcEE-EEeCCC--eEEEEeC-CCCeeEeeecCCccEE--EEEecCCEEE-EeecCcEEEEEeCC-Cceeee
Q 001123 422 TEALTTSIDGMIW-TGGANG--LLLQWDP-NGNRLQDFQYLPFAVQ--CLCTFGSQIW-VGYMNGIVQVLDLE-GNLLGG 493 (1149)
Q Consensus 422 V~ava~s~Dg~la-Sgs~Dg--tIrlWD~-tG~~l~tl~gH~~~V~--sls~dG~~La-SGs~DGtIrlWD~~-G~~l~~ 493 (1149)
...+.+.+||.++ |.+.-| .|+.+|+ +|+.++...-.. ... .++.-+..|+ ---.+++.-+||.+ -+.+.+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-RYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-T--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-cccceeEEEECCEEEEEEecCCeEEEEccccceEEEE
Confidence 3445566677765 555544 7999999 788765543221 111 3444344444 45578999999976 566666
Q ss_pred eeccCCCeEEEEecCCeEEeecCCCceeeeec
Q 001123 494 WVAHSSPVIKMAVGAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 494 l~gH~~~V~sLa~Dg~~LaSgS~DgtIRlWdl 525 (1149)
+.- .+.=+.|+.|++.|+.......++.+|.
T Consensus 126 ~~y-~~EGWGLt~dg~~Li~SDGS~~L~~~dP 156 (264)
T PF05096_consen 126 FPY-PGEGWGLTSDGKRLIMSDGSSRLYFLDP 156 (264)
T ss_dssp EE--SSS--EEEECSSCEEEE-SSSEEEEE-T
T ss_pred Eec-CCcceEEEcCCCEEEEECCccceEEECC
Confidence 643 4566788888888776554556666663
No 427
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=29.97 E-value=1.3e+02 Score=35.39 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=14.8
Q ss_pred CeEEecCceeeCCCCeeEEEEEEee
Q 001123 1029 WLEVTPATGMIKPDRTAEMSVHHED 1053 (1149)
Q Consensus 1029 Wl~v~p~~g~i~p~~~~~i~~~~~~ 1053 (1149)
=|+|+|.. -|.|||+.+++|++.|
T Consensus 312 gL~vs~~~-pI~PGETrtl~V~a~d 335 (381)
T PF04744_consen 312 GLSVSDNS-PIAPGETRTLTVEAQD 335 (381)
T ss_dssp -EEES--S--B-TT-EEEEEEEEE-
T ss_pred cceeCCCC-CcCCCceEEEEEEeeh
Confidence 48888864 5899999999999755
No 428
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=28.06 E-value=1.4e+02 Score=32.56 Aligned_cols=51 Identities=24% Similarity=0.386 Sum_probs=39.2
Q ss_pred cceeEEEEEEecCCeeeEEEEEeecCCccccCCCCCCCCCCCCCCCCCCCeEEecCceeeCCCCeeEEEEEEe
Q 001123 980 NQDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIKPDRTAEMSVHHE 1052 (1149)
Q Consensus 980 ~~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wl~v~p~~g~i~p~~~~~i~~~~~ 1052 (1149)
++...-+.|.|++.. +..|.+-. -.|...=|.|-.|.|.|+++++|.+.+.
T Consensus 17 ~~ske~~sv~Nnspe-pvgfKVKT---------------------TaPK~YcVRPN~g~Iep~stv~VeVilq 67 (242)
T COG5066 17 NKSKEMFSVQNNSPE-PVGFKVKT---------------------TAPKDYCVRPNMGLIEPMSTVEVEVILQ 67 (242)
T ss_pred cccceeeEeecCCCC-ceeEEeec---------------------cCCcceeEcCCCceeccCCeeEEEEEee
Confidence 455566888999876 77787642 1356667999999999999999998853
No 429
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=27.57 E-value=5.8e+02 Score=29.73 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=37.2
Q ss_pred ceEEEEEcCCCcEEEEeCCCeEEEEeCCCCe---eEee----ecCCccEEEEEecC-----CEEEEeec
Q 001123 421 RTEALTTSIDGMIWTGGANGLLLQWDPNGNR---LQDF----QYLPFAVQCLCTFG-----SQIWVGYM 477 (1149)
Q Consensus 421 ~V~ava~s~Dg~laSgs~DgtIrlWD~tG~~---l~tl----~gH~~~V~sls~dG-----~~LaSGs~ 477 (1149)
...++++.|||.++.+-..|.|++.+.+|.. +..+ .........++++. .+|+..+.
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t 71 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYT 71 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEE
Confidence 3467889999998888889999999975543 2222 12334567777654 56666555
No 430
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=27.24 E-value=4e+02 Score=33.34 Aligned_cols=65 Identities=15% Similarity=0.327 Sum_probs=43.2
Q ss_pred CCcEEEEeCCCeEEEEeC-CCCeeEeeecCC-ccE----------EEEEecCCEEEEeecCcEEEEEeCC-Cceeeee
Q 001123 430 DGMIWTGGANGLLLQWDP-NGNRLQDFQYLP-FAV----------QCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGW 494 (1149)
Q Consensus 430 Dg~laSgs~DgtIrlWD~-tG~~l~tl~gH~-~~V----------~sls~dG~~LaSGs~DGtIrlWD~~-G~~l~~l 494 (1149)
++.|+.++.++.|.-.|. +|+.+=.+.... ..+ ..++..+.+|+.++.|+.|.-.|.+ |+.+-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 567777777888888888 787654332110 011 1234556788899999999999974 8876544
No 431
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=27.03 E-value=1.4e+02 Score=24.47 Aligned_cols=30 Identities=23% Similarity=0.189 Sum_probs=22.1
Q ss_pred CCEEEEEEeCCC---cEEEEE-CCCcEEEEeCCC
Q 001123 242 GPVLSLCISSYG---DLWSGS-EGGGIKIWPWEA 271 (1149)
Q Consensus 242 ~~VtsVafSpdG---~L~SGS-~DgTIRVWdl~t 271 (1149)
|+|.+|.|||++ .|+.=+ .-+.|-|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 579999999753 354444 457899999974
No 432
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=26.29 E-value=4.4e+02 Score=29.54 Aligned_cols=86 Identities=17% Similarity=0.162 Sum_probs=56.9
Q ss_pred EEEEcCCCc-E-EEEeCCCeEEEEe--C-CCCe-----eEeeecCC---cc---EEEEEecCCEEEEeecCcEEEEEeC-
Q 001123 424 ALTTSIDGM-I-WTGGANGLLLQWD--P-NGNR-----LQDFQYLP---FA---VQCLCTFGSQIWVGYMNGIVQVLDL- 486 (1149)
Q Consensus 424 ava~s~Dg~-l-aSgs~DgtIrlWD--~-tG~~-----l~tl~gH~---~~---V~sls~dG~~LaSGs~DGtIrlWD~- 486 (1149)
.++++.|.+ + +.-+.+-+|.-|| . +|.. +-.++..+ .. =.+|..+|...++.-+.|+|+..|.
T Consensus 162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~ 241 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPT 241 (310)
T ss_pred cccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCC
Confidence 345555544 3 4566788888888 3 5632 33333210 00 1133345777777778899999995
Q ss_pred CCceeeeeeccCCCeEEEEecCC
Q 001123 487 EGNLLGGWVAHSSPVIKMAVGAG 509 (1149)
Q Consensus 487 ~G~~l~~l~gH~~~V~sLa~Dg~ 509 (1149)
+|+++..+.--+..|++.++.|+
T Consensus 242 tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 242 TGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CCcEEEEEEcCCCceEEEEecCC
Confidence 59999999888999999998776
No 433
>PRK13684 Ycf48-like protein; Provisional
Probab=25.63 E-value=2.1e+02 Score=33.52 Aligned_cols=64 Identities=20% Similarity=0.374 Sum_probs=42.2
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecC----CCCEEEEEEeCCCcEEEEECCCcEEE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH----RGPVLSLCISSYGDLWSGSEGGGIKI 266 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH----~~~VtsVafSpdG~L~SGS~DgTIRV 266 (1149)
.+.+.++++.+++.+++.|..-...+.++-.+ .+|+.+ ...++++++.++++++..+..|.+++
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg------------~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~ 239 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQ------------TAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRF 239 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCCC------------CeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEE
Confidence 45688999999987776665543333433221 123222 45789999999999777777888754
No 434
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=25.48 E-value=3.9e+02 Score=30.70 Aligned_cols=120 Identities=11% Similarity=0.051 Sum_probs=72.3
Q ss_pred CccccccceeEEEEEeeCCeEEEeCCCCEEEEeCCCCC-CCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCC
Q 001123 125 PLRETQIGCFLRTIVCTEEQLWAGGENGLRVWNLKELY-DESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS 203 (1149)
Q Consensus 125 pl~e~~~~~~l~~l~~~~~~l~ag~D~tVrvWd~~~g~-~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg 203 (1149)
.+.+....-.+.+|+.-++.+.++..+.|.+|++.... .... ...+....+.++... +
T Consensus 81 ~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~-------------------~~~~~~~~i~sl~~~--~ 139 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKK-------------------AFYDSPFYITSLSVF--K 139 (321)
T ss_dssp EEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEE-------------------EEE-BSSSEEEEEEE--T
T ss_pred EEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhh-------------------heecceEEEEEEecc--c
Confidence 34445555567788888899999989999999988655 1111 011112245555443 5
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCC
Q 001123 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (1149)
Q Consensus 204 ~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~ 270 (1149)
.+|+-|..-..|-++...... ..+..+.. .-..-.|+++.|-++++ ++.+..+|.|.++...
T Consensus 140 ~~I~vgD~~~sv~~~~~~~~~----~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 140 NYILVGDAMKSVSLLRYDEEN----NKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp TEEEEEESSSSEEEEEEETTT----E-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred cEEEEEEcccCEEEEEEEccC----CEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 588888877777766443211 00111110 11245689999986664 8899999999999874
No 435
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=25.37 E-value=1.2e+02 Score=22.27 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=18.3
Q ss_pred cEEEEEecCCEEEEeecCcEEEEE
Q 001123 461 AVQCLCTFGSQIWVGYMNGIVQVL 484 (1149)
Q Consensus 461 ~V~sls~dG~~LaSGs~DGtIrlW 484 (1149)
.|.+++...++++++.+-+.+|+|
T Consensus 3 ~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred eEEEEEccCCEEEEEeCCCeEEec
Confidence 466777777788888888888876
No 436
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=25.08 E-value=1e+03 Score=26.78 Aligned_cols=153 Identities=12% Similarity=0.141 Sum_probs=0.0
Q ss_pred CCeEEEEEcCCCCEEEEecC--CceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceee
Q 001123 312 SDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSF 389 (1149)
Q Consensus 312 ~dv~~las~~~~~~v~Sasd--~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si 389 (1149)
.++..++..+++..+|+..+ ..|.-.|. +|+.++.....+. .....+
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~------------------------------~D~EgI 70 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGF------------------------------GDYEGI 70 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-------------------------------SSEEEE
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCC------------------------------CCceeE
Q ss_pred eeeccccceEeecCCcEEEEee-----------------cccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeCCC--
Q 001123 390 GFFQRSRNAIMGAADAVRRVAA-----------------KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPNG-- 449 (1149)
Q Consensus 390 ~f~~~~~~~i~G~~d~v~rv~~-----------------~g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~tG-- 449 (1149)
.+..++..+++....+....-. .+....+....+.+++.+.+. ++.+-+..-.+|+.+.+
T Consensus 71 ~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~ 150 (248)
T PF06977_consen 71 TYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP 150 (248)
T ss_dssp EE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT
T ss_pred EEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc
Q ss_pred ----------CeeEeeecCCccEEEEEec---CCEEEEeecCcEEEEEeCCCceeeeee
Q 001123 450 ----------NRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLEGNLLGGWV 495 (1149)
Q Consensus 450 ----------~~l~tl~gH~~~V~sls~d---G~~LaSGs~DGtIrlWD~~G~~l~~l~ 495 (1149)
..+.........+.+++++ |..++-...+..|-.+|.+|+.+..+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~ 209 (248)
T PF06977_consen 151 GGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLS 209 (248)
T ss_dssp -SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE
T ss_pred CccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEE
No 437
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=25.07 E-value=9.5e+02 Score=26.47 Aligned_cols=60 Identities=20% Similarity=0.350 Sum_probs=38.3
Q ss_pred eCCeEEEeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001123 141 TEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (1149)
Q Consensus 141 ~~~~l~ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl 220 (1149)
.++.|+.|.+.+|.++++....... .-.+ ..+|.-+.+-++-.+|+.= .|+++.++++
T Consensus 6 ~~~~L~vGt~~Gl~~~~~~~~~~~~--------------------~i~~-~~~I~ql~vl~~~~~llvL-sd~~l~~~~L 63 (275)
T PF00780_consen 6 WGDRLLVGTEDGLYVYDLSDPSKPT--------------------RILK-LSSITQLSVLPELNLLLVL-SDGQLYVYDL 63 (275)
T ss_pred CCCEEEEEECCCEEEEEecCCccce--------------------eEee-cceEEEEEEecccCEEEEE-cCCccEEEEc
Confidence 3677888887789999983222111 1122 3458888887775555443 3699999998
Q ss_pred CC
Q 001123 221 NA 222 (1149)
Q Consensus 221 ~~ 222 (1149)
..
T Consensus 64 ~~ 65 (275)
T PF00780_consen 64 DS 65 (275)
T ss_pred hh
Confidence 65
No 438
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=25.06 E-value=4.8e+02 Score=29.96 Aligned_cols=69 Identities=16% Similarity=0.288 Sum_probs=44.7
Q ss_pred CCceEEEEEcCCCCEEEEEe------CCCeEEEEECCCCCCCCCCCccceEEeecC-----CCCEEEEEEeC-CC-cEE-
Q 001123 191 VSSVMCMVGDEASGVVWSGH------RDGRIMCWKMNARLLDSDDGFGEVLSWQAH-----RGPVLSLCISS-YG-DLW- 256 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS------~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH-----~~~VtsVafSp-dG-~L~- 256 (1149)
.+.|..|.|..+.++++.|. ....+-.||+.+.. -..+.+- .++|+++.+.. |+ +++
T Consensus 36 ~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~---------w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~ 106 (281)
T PF12768_consen 36 SGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT---------WSSLGGGSSNSIPGPVTALTFISNDGSNFWV 106 (281)
T ss_pred eEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe---------eeecCCcccccCCCcEEEEEeeccCCceEEE
Confidence 57899999998889999986 56678899987633 1223331 37899888854 33 354
Q ss_pred EEE-CC--CcEEEEe
Q 001123 257 SGS-EG--GGIKIWP 268 (1149)
Q Consensus 257 SGS-~D--gTIRVWd 268 (1149)
+|. .+ ..|..||
T Consensus 107 aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 107 AGRSANGSTFLMKYD 121 (281)
T ss_pred eceecCCCceEEEEc
Confidence 332 23 3455554
No 439
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=24.99 E-value=1.3e+03 Score=27.88 Aligned_cols=80 Identities=21% Similarity=0.224 Sum_probs=52.6
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCC-------------------------------C----CCccceEEe
Q 001123 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS-------------------------------D----DGFGEVLSW 237 (1149)
Q Consensus 193 ~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~-------------------------------~----~~~~~~~~l 237 (1149)
.|.++.|+++..-|+-|-..|.|.+|.....+--. . ..|.+..-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47788999998889999999999998753321000 0 012222234
Q ss_pred ecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCc
Q 001123 238 QAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAI 272 (1149)
Q Consensus 238 ~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~ 272 (1149)
...+++|++++.|.=|-++-|.+||++-|-|++..
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGP 117 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGP 117 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTT
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCC
Confidence 55689999999997787889999999999999653
No 440
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=23.63 E-value=8.1e+02 Score=29.55 Aligned_cols=97 Identities=11% Similarity=0.151 Sum_probs=57.3
Q ss_pred eeeeeccccceEeecCCcEEEEeecc------cccCC-----CCceEEEEEcCCCcEEEEeCCCeEEEEeCCCCeeEee-
Q 001123 388 SFGFFQRSRNAIMGAADAVRRVAAKG------GFGDD-----NRRTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQDF- 455 (1149)
Q Consensus 388 si~f~~~~~~~i~G~~d~v~rv~~~g------~~~~~-----~~~V~ava~s~Dg~laSgs~DgtIrlWD~tG~~l~tl- 455 (1149)
.+.+.+++...+.+...++.+..+.+ .|... ...+.++.+.+++.++.++.+|.+....-.|+-=+..
T Consensus 285 ~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~ 364 (398)
T PLN00033 285 NMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDK 364 (398)
T ss_pred eeeEcCCCCEEEEeCCceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEcc
Confidence 34444555555555555554433332 23221 1237778899999999999999887776556432222
Q ss_pred --ecCCccEEEEEe-cCCEEEEeecCcEEEEE
Q 001123 456 --QYLPFAVQCLCT-FGSQIWVGYMNGIVQVL 484 (1149)
Q Consensus 456 --~gH~~~V~sls~-dG~~LaSGs~DGtIrlW 484 (1149)
..-....+.+.+ +.+..+..+.+|.|--|
T Consensus 365 ~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 365 GADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred ccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 222345778876 44667777788877544
No 441
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=23.00 E-value=1.4e+02 Score=37.86 Aligned_cols=68 Identities=15% Similarity=0.229 Sum_probs=45.1
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCC
Q 001123 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (1149)
Q Consensus 193 ~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~ 270 (1149)
-+.++.-.|.|+-+++|++||.|++++....+ ....+. -..|-..++|+..| |+++..|+.+--|.-+
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~--------qski~~-~~~p~~nlv~tnhg-l~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRR--------QSKICE-EAKPKENLVFTNHG-LVTATSDRRALAWKED 83 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecccc--------hhhhhh-hcCCccceeeeccc-eEEEeccchhheeecc
Confidence 45566667999999999999999999976532 011111 12244456666555 6777778877788643
No 442
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=22.25 E-value=6.2e+02 Score=30.04 Aligned_cols=98 Identities=18% Similarity=0.221 Sum_probs=0.0
Q ss_pred CCeEEE------eCCCC-EEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCe
Q 001123 142 EEQLWA------GGENG-LRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGR 214 (1149)
Q Consensus 142 ~~~l~a------g~D~t-VrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGt 214 (1149)
+++++| |+|.. |++.|+++|..+.. .+. ...-..++|.+|++.++-...|..
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--------------------~i~-~~~~~~~~W~~d~~~~~y~~~~~~ 192 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--------------------GIE-NPKFSSVSWSDDGKGFFYTRFDED 192 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--------------------EEE-EEESEEEEECTTSSEEEEEECSTT
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcCC--------------------ccc-ccccceEEEeCCCCEEEEEEeCcc
Q ss_pred -----------EEEEECCCCCCCCCCCccc-eEEeecCCCC--EEEEEEeCCCc--EEEEECCCc-EEEE
Q 001123 215 -----------IMCWKMNARLLDSDDGFGE-VLSWQAHRGP--VLSLCISSYGD--LWSGSEGGG-IKIW 267 (1149)
Q Consensus 215 -----------IRvWdl~~g~~~~~~~~~~-~~~l~GH~~~--VtsVafSpdG~--L~SGS~DgT-IRVW 267 (1149)
|+.|++.+.. .. ...|++..+. ...+..|+|++ +++.+...+ =.+|
T Consensus 193 ~~~~~~~~~~~v~~~~~gt~~-------~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~ 255 (414)
T PF02897_consen 193 QRTSDSGYPRQVYRHKLGTPQ-------SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVY 255 (414)
T ss_dssp TSS-CCGCCEEEEEEETTS-G-------GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEE
T ss_pred cccccCCCCcEEEEEECCCCh-------HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEE
No 443
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=21.75 E-value=1.2e+03 Score=27.82 Aligned_cols=90 Identities=16% Similarity=0.180 Sum_probs=55.1
Q ss_pred EEEEcCCC-cEEEEeC---CCeEEEEeC-CCCeeEeeecCCccEEEE--EecCCEEEEee-cCcEEEEEeCCCceeee--
Q 001123 424 ALTTSIDG-MIWTGGA---NGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGY-MNGIVQVLDLEGNLLGG-- 493 (1149)
Q Consensus 424 ava~s~Dg-~laSgs~---DgtIrlWD~-tG~~l~tl~gH~~~V~sl--s~dG~~LaSGs-~DGtIrlWD~~G~~l~~-- 493 (1149)
.+++++++ .++.+.. +++|-+-|. +++.+.+......+ ..+ .++|++++... .+++|.+.|.++..+..
T Consensus 120 ~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~ 198 (381)
T COG3391 120 GLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGS 198 (381)
T ss_pred eEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccc
Confidence 45677777 4654444 688888888 67777775544444 333 45798777776 78999999977554332
Q ss_pred ----eeccCC-CeEEEEecCCeEEee
Q 001123 494 ----WVAHSS-PVIKMAVGAGYIFTL 514 (1149)
Q Consensus 494 ----l~gH~~-~V~sLa~Dg~~LaSg 514 (1149)
..-+.. ....+.+||++++..
T Consensus 199 ~~~~~~~~~~P~~i~v~~~g~~~yV~ 224 (381)
T COG3391 199 VGSLVGVGTGPAGIAVDPDGNRVYVA 224 (381)
T ss_pred cccccccCCCCceEEECCCCCEEEEE
Confidence 111222 233344677765543
No 444
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=21.17 E-value=6.4e+02 Score=33.17 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=22.1
Q ss_pred cCCEEEEeecCcEEEEEeCC-Cceeeee
Q 001123 468 FGSQIWVGYMNGIVQVLDLE-GNLLGGW 494 (1149)
Q Consensus 468 dG~~LaSGs~DGtIrlWD~~-G~~l~~l 494 (1149)
.+.+|+.++.|+.+.-.|.+ |+.+..+
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~f 286 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTGKLCEDF 286 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCCCEEEEe
Confidence 35689999999999999965 8887665
No 445
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=21.03 E-value=3.6e+02 Score=25.48 Aligned_cols=36 Identities=8% Similarity=0.020 Sum_probs=21.8
Q ss_pred eCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc
Q 001123 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD 254 (1149)
Q Consensus 210 S~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~ 254 (1149)
..+|.+-.||+.+++ ...+..--.-=+.|++++|++
T Consensus 34 ~~~GRll~ydp~t~~---------~~vl~~~L~fpNGVals~d~~ 69 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKE---------TTVLLDGLYFPNGVALSPDES 69 (89)
T ss_dssp ---EEEEEEETTTTE---------EEEEEEEESSEEEEEE-TTSS
T ss_pred CCCcCEEEEECCCCe---------EEEehhCCCccCeEEEcCCCC
Confidence 345777788888754 333333334668899999998
No 446
>PRK13202 ureB urease subunit beta; Reviewed
Probab=20.73 E-value=2.1e+02 Score=27.72 Aligned_cols=71 Identities=11% Similarity=0.203 Sum_probs=39.5
Q ss_pred eEeecCcEEeccc--eeEEEEEEecCCee---eEEEEEeecCCccccCCCCCCCCCCC-CCCCCCCCeEEec-CceeeCC
Q 001123 969 TIVSTNNIIIQNQ--DTSILRVTNKCGKK---DAFYQINCEGQSTVKDDGQASDRHPR-GSFGFPRWLEVTP-ATGMIKP 1041 (1149)
Q Consensus 969 ~~~~~~~i~~~~~--~~~~l~i~N~~~~~---~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Wl~v~p-~~g~i~p 1041 (1149)
..+....|.+... ++..|+++|+|..+ -.||.|..- | .+-+ +.| ..+| .=|.|-- .+=..+|
T Consensus 6 i~~~~~~I~ln~grr~~~~l~V~NtGDRPIQVGSHyHF~E~------N--~aL~-FDR~~A~G--~RLdIpaGTavRFEP 74 (104)
T PRK13202 6 IFYGSGDIEMNAAALSRLQMRIINAGDRPVQVGSHVHLPQA------N--RALS-FDRATAHG--YRLDIPAATAVRFEP 74 (104)
T ss_pred EecCCCCEEeCCCCCceEEEEEEeCCCCceEEccccchhhc------C--ccee-ecHhHhcC--cccccCCCCeEEECC
Confidence 3445566777754 57789999999752 236776621 1 0000 011 1111 1233322 2337899
Q ss_pred CCeeEEEEE
Q 001123 1042 DRTAEMSVH 1050 (1149)
Q Consensus 1042 ~~~~~i~~~ 1050 (1149)
|++.+|+|.
T Consensus 75 G~~k~V~LV 83 (104)
T PRK13202 75 GIPQIVGLV 83 (104)
T ss_pred CCeEEEEEE
Confidence 999999987
No 447
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=20.59 E-value=5.9e+02 Score=28.46 Aligned_cols=81 Identities=12% Similarity=0.141 Sum_probs=49.6
Q ss_pred CCceEeecCcEEec--cceeEEEEEEecCCeeeEEEEEeecCCccccCCCCCCCCCCCCCCCCCCCeEEecCceeeCCCC
Q 001123 966 IPETIVSTNNIIIQ--NQDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIKPDR 1043 (1149)
Q Consensus 966 ~p~~~~~~~~i~~~--~~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wl~v~p~~g~i~p~~ 1043 (1149)
..++.|.+-.+.++ ++....++|.|+|.. +...++--.. ..+.|...+........-.+=|-++|..-+|.||+
T Consensus 15 aa~l~V~Pi~~~i~a~~~~~~~v~V~N~g~~-~~~vqV~v~r---~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~pg~ 90 (234)
T PRK15308 15 RANMLVYPMAAEIGAGREEATSLFVYSKSDH-TQYVRTRIKR---IEHPATPQEKEVPAGNDIETGLVVSPEKFALPAGT 90 (234)
T ss_pred hceEEEEEeEEEecCCCcceEEEEEEeCCCC-cEEEEEEEEE---EcCCCCCCCcccccccCCCCcEEEcCceeEECCCC
Confidence 34677888888886 356678999999885 5555543211 11111111100000011123489999999999999
Q ss_pred eeEEEEE
Q 001123 1044 TAEMSVH 1050 (1149)
Q Consensus 1044 ~~~i~~~ 1050 (1149)
+-.|.|-
T Consensus 91 ~q~IRli 97 (234)
T PRK15308 91 TRTVRVI 97 (234)
T ss_pred eEEEEEE
Confidence 9999977
No 448
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=20.49 E-value=1.1e+03 Score=26.35 Aligned_cols=110 Identities=14% Similarity=0.011 Sum_probs=0.0
Q ss_pred ccccCCCCceEEEEEcCCCc-EEEEe---CCCeEEEEeCCCCeeEeeecCCccEEEEEecCCEEEEeecCcEEEEE--eC
Q 001123 413 GGFGDDNRRTEALTTSIDGM-IWTGG---ANGLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVL--DL 486 (1149)
Q Consensus 413 g~~~~~~~~V~ava~s~Dg~-laSgs---~DgtIrlWD~tG~~l~tl~gH~~~V~sls~dG~~LaSGs~DGtIrlW--D~ 486 (1149)
+.+......+.+.+.++||. ++... ....+.++...+.....+.+..-.--++..+|...+....+...+++ +.
T Consensus 17 g~~~~~~~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~ 96 (253)
T PF10647_consen 17 GALGEGGYDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSA 96 (253)
T ss_pred CCcCcCCccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecC
Q ss_pred CCceeeeeeccCC---CeEEEE--ecCCeEE---eecCCCceee
Q 001123 487 EGNLLGGWVAHSS---PVIKMA--VGAGYIF---TLANHGGIRG 522 (1149)
Q Consensus 487 ~G~~l~~l~gH~~---~V~sLa--~Dg~~La---SgS~DgtIRl 522 (1149)
+|+....-..... .|.++. +||..++ ....++.|.+
T Consensus 97 ~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~v 140 (253)
T PF10647_consen 97 SGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYV 140 (253)
T ss_pred CCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEE
Done!