Query 001123
Match_columns 1149
No_of_seqs 525 out of 2579
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 12:12:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001123.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001123hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mtc_A Type II inositol-1,4,5- 100.0 4.2E-87 1.4E-91 748.5 33.1 306 546-938 2-307 (313)
2 4a9c_A Phosphatidylinositol-3, 100.0 3.4E-81 1.2E-85 702.4 28.6 292 548-935 4-314 (316)
3 1i9z_A Synaptojanin, phosphati 100.0 2.6E-78 9E-83 693.5 30.4 330 529-954 2-337 (347)
4 2xsw_A 72 kDa inositol polypho 100.0 1.1E-75 3.8E-80 672.9 30.9 305 544-939 18-327 (357)
5 2imq_X Salivary nitrophorin; f 100.0 4.5E-60 1.5E-64 530.8 21.0 276 549-934 4-282 (282)
6 1vyh_C Platelet-activating fac 100.0 1.5E-35 5.1E-40 346.9 38.3 267 191-525 108-409 (410)
7 1nr0_A Actin interacting prote 100.0 5.6E-35 1.9E-39 359.8 43.5 364 131-525 146-609 (611)
8 2ymu_A WD-40 repeat protein; u 100.0 1.6E-34 5.4E-39 348.9 46.3 329 134-524 223-577 (577)
9 1nr0_A Actin interacting prote 100.0 1.5E-34 5.2E-39 355.9 45.3 357 142-528 30-568 (611)
10 4gqb_B Methylosome protein 50; 100.0 1E-34 3.6E-39 333.2 35.9 288 132-527 30-331 (344)
11 4g56_B MGC81050 protein; prote 100.0 3.4E-34 1.2E-38 329.4 35.8 286 191-536 42-352 (357)
12 3ow8_A WD repeat-containing pr 100.0 4.3E-34 1.5E-38 323.8 35.4 269 191-525 32-319 (321)
13 2ymu_A WD-40 repeat protein; u 100.0 5.8E-33 2E-37 335.3 46.5 362 131-525 15-414 (577)
14 1erj_A Transcriptional repress 100.0 9.2E-34 3.1E-38 329.3 37.8 297 131-527 63-389 (393)
15 1got_B GT-beta; complex (GTP-b 100.0 3.7E-33 1.3E-37 317.5 38.2 273 188-524 51-340 (340)
16 2ynn_A Coatomer subunit beta'; 100.0 4.9E-32 1.7E-36 303.4 37.1 269 191-527 13-302 (304)
17 3iz6_a 40S ribosomal protein R 100.0 6.8E-33 2.3E-37 320.5 30.6 284 188-527 62-375 (380)
18 2pbi_B Guanine nucleotide-bind 100.0 6E-32 2.1E-36 310.1 37.9 277 188-524 60-354 (354)
19 3frx_A Guanine nucleotide-bind 100.0 9.5E-32 3.2E-36 303.5 36.4 280 188-527 13-317 (319)
20 1vyh_C Platelet-activating fac 100.0 1.2E-31 4E-36 313.9 38.1 288 131-486 107-409 (410)
21 4ery_A WD repeat-containing pr 100.0 1.4E-31 4.8E-36 298.7 36.7 271 188-526 19-311 (312)
22 2hes_X YDR267CP; beta-propelle 100.0 8.6E-32 2.9E-36 305.3 35.0 288 131-527 13-328 (330)
23 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.5E-31 5.1E-36 305.2 35.8 275 192-530 17-338 (345)
24 2oaj_A Protein SNI1; WD40 repe 100.0 1.7E-30 5.9E-35 334.5 43.4 361 133-525 18-659 (902)
25 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-30 4.8E-35 344.0 43.1 372 131-531 614-1120(1249)
26 2pm9_A Protein WEB1, protein t 100.0 3.6E-31 1.2E-35 304.8 32.5 307 149-528 43-415 (416)
27 2xzm_R RACK1; ribosome, transl 100.0 2E-30 6.8E-35 295.0 37.7 286 188-527 17-340 (343)
28 3vl1_A 26S proteasome regulato 100.0 2.4E-30 8.3E-35 299.2 38.5 322 139-528 65-420 (420)
29 4aow_A Guanine nucleotide-bind 100.0 4.1E-30 1.4E-34 287.2 38.2 280 187-528 33-338 (340)
30 1got_B GT-beta; complex (GTP-b 100.0 5.1E-30 1.8E-34 291.6 39.5 270 132-485 55-340 (340)
31 1pgu_A Actin interacting prote 100.0 4.8E-30 1.7E-34 310.4 41.0 335 134-527 162-614 (615)
32 3ow8_A WD repeat-containing pr 100.0 2E-30 6.7E-35 293.8 34.6 267 133-486 33-319 (321)
33 1r5m_A SIR4-interacting protei 100.0 2.5E-30 8.4E-35 296.7 34.0 282 191-526 108-424 (425)
34 4gqb_B Methylosome protein 50; 100.0 3.7E-30 1.3E-34 295.3 32.7 245 191-528 30-290 (344)
35 2pm7_B Protein transport prote 100.0 5.7E-30 1.9E-34 285.7 32.3 252 191-529 9-287 (297)
36 1p22_A F-BOX/WD-repeat protein 100.0 6.4E-30 2.2E-34 300.1 33.3 271 133-530 134-417 (435)
37 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.4E-29 2.2E-33 291.8 41.8 297 135-527 122-442 (445)
38 4h5i_A Guanine nucleotide-exch 100.0 1.4E-30 4.6E-35 300.6 26.3 284 191-526 14-342 (365)
39 2pbi_B Guanine nucleotide-bind 100.0 9.2E-29 3.2E-33 283.6 37.9 273 131-485 63-354 (354)
40 3zwl_B Eukaryotic translation 100.0 1.4E-28 4.7E-33 276.7 37.6 280 191-527 32-346 (369)
41 4ggc_A P55CDC, cell division c 100.0 5.2E-29 1.8E-33 275.6 32.9 273 138-530 31-318 (318)
42 3bg1_A Protein SEC13 homolog; 100.0 9.3E-30 3.2E-34 286.8 27.0 252 191-527 13-293 (316)
43 4gga_A P55CDC, cell division c 100.0 4.9E-29 1.7E-33 291.5 34.1 271 142-532 116-400 (420)
44 3k26_A Polycomb protein EED; W 100.0 1.2E-29 4.3E-34 285.4 28.0 307 131-526 17-365 (366)
45 2ynn_A Coatomer subunit beta'; 100.0 5.4E-29 1.8E-33 278.7 32.7 236 232-527 4-259 (304)
46 3dm0_A Maltose-binding peripla 100.0 1.6E-28 5.4E-33 306.2 39.5 277 131-526 381-692 (694)
47 2j04_B YDR362CP, TAU91; beta p 100.0 5.8E-30 2E-34 310.6 25.1 304 148-526 180-516 (524)
48 1gxr_A ESG1, transducin-like e 100.0 8.8E-28 3E-32 267.1 40.5 275 131-525 50-335 (337)
49 3i2n_A WD repeat-containing pr 100.0 5.6E-29 1.9E-33 279.5 30.6 279 131-528 17-354 (357)
50 4g56_B MGC81050 protein; prote 100.0 1.2E-28 4E-33 283.4 33.2 277 131-487 41-342 (357)
51 3sfz_A APAF-1, apoptotic pepti 100.0 1.3E-28 4.6E-33 325.1 38.6 328 148-526 720-1157(1249)
52 3v7d_B Cell division control p 100.0 8.5E-28 2.9E-32 282.8 41.3 319 135-523 125-459 (464)
53 1erj_A Transcriptional repress 100.0 1.3E-28 4.6E-33 285.8 33.9 234 191-530 64-344 (393)
54 2hes_X YDR267CP; beta-propelle 100.0 2.4E-28 8.2E-33 276.9 33.8 242 188-526 10-279 (330)
55 2xzm_R RACK1; ribosome, transl 100.0 4.8E-28 1.7E-32 275.4 36.1 275 132-487 21-339 (343)
56 1k8k_C P40, ARP2/3 complex 41 100.0 2.9E-28 9.9E-33 275.8 33.5 272 191-527 8-361 (372)
57 1sq9_A Antiviral protein SKI8; 100.0 2.9E-28 9.9E-33 279.2 33.7 284 191-527 16-395 (397)
58 3odt_A Protein DOA1; ubiquitin 100.0 1.1E-27 3.9E-32 263.8 36.9 269 188-528 14-297 (313)
59 3v7d_B Cell division control p 100.0 1.5E-27 5.2E-32 280.6 40.2 292 191-532 121-426 (464)
60 3iz6_a 40S ribosomal protein R 100.0 7.9E-29 2.7E-33 286.4 28.2 282 131-488 65-375 (380)
61 4e54_B DNA damage-binding prot 100.0 7.3E-29 2.5E-33 291.7 27.0 272 191-528 119-431 (435)
62 3dwl_C Actin-related protein 2 100.0 3.6E-29 1.2E-33 285.5 23.5 267 191-525 11-377 (377)
63 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.1E-28 2.1E-32 275.3 33.7 277 135-491 19-339 (345)
64 1pgu_A Actin interacting prote 100.0 1.1E-27 3.7E-32 289.8 36.5 303 141-526 29-365 (615)
65 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.9E-27 6.4E-32 279.3 37.3 264 191-530 118-394 (445)
66 3ei3_B DNA damage-binding prot 100.0 6.7E-28 2.3E-32 276.4 32.2 269 191-527 73-382 (383)
67 4ery_A WD repeat-containing pr 100.0 5.3E-27 1.8E-31 261.6 37.9 269 131-487 22-311 (312)
68 3gre_A Serine/threonine-protei 100.0 3.2E-28 1.1E-32 284.2 28.7 280 191-524 63-437 (437)
69 3f3f_A Nucleoporin SEH1; struc 100.0 8.7E-28 3E-32 266.1 30.1 262 191-530 11-340 (351)
70 4a11_B DNA excision repair pro 100.0 5.9E-28 2E-32 275.9 29.5 303 150-532 22-370 (408)
71 1r5m_A SIR4-interacting protei 100.0 3.4E-27 1.2E-31 270.6 35.6 287 191-527 45-361 (425)
72 2oaj_A Protein SNI1; WD40 repe 100.0 2.5E-27 8.4E-32 305.2 36.6 372 135-527 101-732 (902)
73 4aez_A CDC20, WD repeat-contai 100.0 4.8E-27 1.6E-31 272.7 35.2 270 137-531 98-384 (401)
74 3frx_A Guanine nucleotide-bind 100.0 7.4E-27 2.5E-31 263.4 35.1 271 131-487 16-316 (319)
75 3mmy_A MRNA export factor; mRN 100.0 8.2E-27 2.8E-31 262.1 31.5 267 191-528 39-347 (368)
76 2pm9_A Protein WEB1, protein t 100.0 1.1E-27 3.9E-32 275.6 24.9 276 192-530 13-340 (416)
77 3vl1_A 26S proteasome regulato 100.0 1.6E-27 5.5E-32 275.5 25.7 291 193-529 58-367 (420)
78 3jrp_A Fusion protein of prote 100.0 9.8E-27 3.4E-31 263.0 30.1 235 191-527 11-287 (379)
79 3dw8_B Serine/threonine-protei 100.0 1.3E-26 4.3E-31 269.9 31.7 276 191-528 28-374 (447)
80 1yfq_A Cell cycle arrest prote 100.0 1.6E-26 5.5E-31 258.8 30.7 269 134-525 13-322 (342)
81 4h5i_A Guanine nucleotide-exch 100.0 7.6E-27 2.6E-31 269.3 26.5 281 130-487 12-342 (365)
82 3dm0_A Maltose-binding peripla 100.0 3E-26 1E-30 285.7 33.6 245 188-530 378-635 (694)
83 1p22_A F-BOX/WD-repeat protein 99.9 4.7E-26 1.6E-30 267.2 33.0 229 191-527 133-365 (435)
84 4aow_A Guanine nucleotide-bind 99.9 6.8E-25 2.3E-29 244.9 37.6 276 131-489 37-339 (340)
85 3mkq_A Coatomer beta'-subunit; 99.9 1.8E-25 6.3E-30 281.0 36.5 272 191-530 13-305 (814)
86 4gq1_A NUP37; propeller, trans 99.9 9.5E-27 3.2E-31 270.7 21.2 257 194-525 92-387 (393)
87 2aq5_A Coronin-1A; WD40 repeat 99.9 1.9E-25 6.6E-30 258.6 32.2 268 148-527 54-342 (402)
88 3k26_A Polycomb protein EED; W 99.9 7.3E-26 2.5E-30 254.6 27.5 239 191-530 18-321 (366)
89 2pm7_B Protein transport prote 99.9 4E-25 1.4E-29 246.4 32.5 238 133-487 10-284 (297)
90 1gxr_A ESG1, transducin-like e 99.9 3.7E-25 1.3E-29 245.8 31.3 273 191-528 9-297 (337)
91 2j04_B YDR362CP, TAU91; beta p 99.9 1.7E-26 5.9E-31 280.1 21.8 236 199-526 169-427 (524)
92 1sq9_A Antiviral protein SKI8; 99.9 4.4E-25 1.5E-29 252.7 31.5 290 131-487 15-394 (397)
93 3bg1_A Protein SEC13 homolog; 99.9 1.6E-25 5.5E-30 252.1 27.0 238 132-487 13-292 (316)
94 3ei3_B DNA damage-binding prot 99.9 7.1E-25 2.4E-29 251.2 32.7 265 133-488 74-382 (383)
95 3mkq_A Coatomer beta'-subunit; 99.9 1E-24 3.5E-29 274.3 37.0 305 132-526 13-385 (814)
96 3dw8_B Serine/threonine-protei 99.9 1.4E-25 4.9E-30 261.0 27.1 302 133-525 29-444 (447)
97 3odt_A Protein DOA1; ubiquitin 99.9 3.6E-24 1.2E-28 235.7 34.8 267 133-491 19-300 (313)
98 3zwl_B Eukaryotic translation 99.9 5.4E-24 1.9E-28 239.1 36.2 280 131-487 31-345 (369)
99 3i2n_A WD repeat-containing pr 99.9 9.7E-25 3.3E-29 245.0 29.4 240 191-530 18-294 (357)
100 2w18_A PALB2, fancn, partner a 99.9 4.8E-25 1.6E-29 251.0 26.3 161 312-525 179-355 (356)
101 1k8k_C P40, ARP2/3 complex 41 99.9 1.4E-24 4.9E-29 245.4 29.6 270 135-487 11-360 (372)
102 3gre_A Serine/threonine-protei 99.9 2E-24 6.9E-29 251.9 31.0 281 133-485 64-437 (437)
103 4a11_B DNA excision repair pro 99.9 1E-23 3.4E-28 240.8 35.9 331 133-525 44-403 (408)
104 3jro_A Fusion protein of prote 99.9 4.7E-25 1.6E-29 278.4 26.5 237 191-529 9-287 (753)
105 3f3f_A Nucleoporin SEH1; struc 99.9 7.7E-24 2.6E-28 234.4 31.3 269 131-497 10-350 (351)
106 2j04_A TAU60, YPL007P, hypothe 99.9 5.2E-25 1.8E-29 265.0 23.2 254 191-526 15-296 (588)
107 1yfq_A Cell cycle arrest prote 99.9 3.1E-24 1E-28 240.2 27.5 244 191-528 11-283 (342)
108 4e54_B DNA damage-binding prot 99.9 6.7E-25 2.3E-29 257.9 22.7 273 132-490 119-433 (435)
109 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.7E-23 5.9E-28 246.7 34.7 235 191-527 102-391 (450)
110 3vu4_A KMHSV2; beta-propeller 99.9 5.5E-24 1.9E-28 244.0 29.3 262 191-530 19-339 (355)
111 3dwl_C Actin-related protein 2 99.9 2.5E-24 8.6E-29 245.4 25.2 277 142-486 23-377 (377)
112 2xyi_A Probable histone-bindin 99.9 8.9E-24 3E-28 248.2 27.5 247 191-526 128-409 (430)
113 1l0q_A Surface layer protein; 99.9 3.2E-22 1.1E-26 229.1 39.1 317 148-563 9-372 (391)
114 4gga_A P55CDC, cell division c 99.9 5.5E-23 1.9E-27 240.2 32.8 246 134-501 149-409 (420)
115 3mmy_A MRNA export factor; mRN 99.9 9.9E-23 3.4E-27 228.7 33.3 267 131-485 38-343 (368)
116 4gq1_A NUP37; propeller, trans 99.9 5.2E-24 1.8E-28 247.7 22.5 261 148-487 108-388 (393)
117 2aq5_A Coronin-1A; WD40 repeat 99.9 3E-23 1E-27 240.2 27.7 246 194-530 37-302 (402)
118 4aez_A CDC20, WD repeat-contai 99.9 1.4E-22 4.7E-27 235.1 32.2 237 132-494 134-387 (401)
119 3lrv_A PRE-mRNA-splicing facto 99.9 2.7E-23 9.2E-28 236.0 25.3 259 142-524 48-330 (343)
120 2vdu_B TRNA (guanine-N(7)-)-me 99.9 6.2E-23 2.1E-27 242.0 28.1 238 192-525 5-337 (450)
121 4ggc_A P55CDC, cell division c 99.9 2.5E-22 8.4E-27 222.0 30.5 234 132-487 67-314 (318)
122 3bws_A Protein LP49; two-domai 99.9 5.2E-22 1.8E-26 230.6 33.2 261 142-526 133-431 (433)
123 3jrp_A Fusion protein of prote 99.9 1.4E-22 4.9E-27 228.8 27.6 240 131-487 10-286 (379)
124 3lrv_A PRE-mRNA-splicing facto 99.9 3.9E-23 1.3E-27 234.6 22.6 231 199-527 44-292 (343)
125 2j04_A TAU60, YPL007P, hypothe 99.9 2.5E-23 8.6E-28 250.4 18.5 116 191-343 85-213 (588)
126 2w18_A PALB2, fancn, partner a 99.9 5.9E-22 2E-26 225.7 25.4 286 103-486 12-355 (356)
127 1l0q_A Surface layer protein; 99.9 3.8E-20 1.3E-24 211.9 34.2 250 204-527 3-275 (391)
128 3vu4_A KMHSV2; beta-propeller 99.9 4.4E-21 1.5E-25 219.8 26.4 227 234-528 12-272 (355)
129 2xyi_A Probable histone-bindin 99.9 1.5E-20 5.3E-25 220.6 28.5 236 148-488 148-410 (430)
130 3jro_A Fusion protein of prote 99.9 5.8E-21 2E-25 241.1 23.3 240 133-487 10-284 (753)
131 3bws_A Protein LP49; two-domai 99.8 1.2E-19 4.1E-24 210.7 27.0 229 192-527 123-390 (433)
132 1nir_A Nitrite reductase; hemo 99.8 1.8E-18 6.3E-23 210.6 35.1 305 142-527 148-514 (543)
133 1nir_A Nitrite reductase; hemo 99.8 7.1E-19 2.4E-23 214.2 31.1 273 198-530 144-461 (543)
134 2hqs_A Protein TOLB; TOLB, PAL 99.8 6.6E-18 2.3E-22 198.2 34.9 229 151-509 159-408 (415)
135 2hqs_A Protein TOLB; TOLB, PAL 99.8 3.7E-18 1.3E-22 200.4 29.9 216 203-526 143-386 (415)
136 3qbt_B Inositol polyphosphate 99.8 6.7E-20 2.3E-24 183.7 12.4 128 939-1101 2-135 (140)
137 3qis_A Inositol polyphosphate 99.8 6.6E-20 2.2E-24 212.1 13.8 156 935-1125 1-167 (366)
138 1k32_A Tricorn protease; prote 99.8 2.9E-17 9.9E-22 214.4 35.9 360 134-527 16-461 (1045)
139 3u4y_A Uncharacterized protein 99.8 2.1E-16 7.1E-21 176.5 29.5 264 142-527 9-304 (331)
140 2ecf_A Dipeptidyl peptidase IV 99.7 9.5E-17 3.3E-21 200.4 28.1 291 191-527 36-413 (741)
141 2ojh_A Uncharacterized protein 99.7 2.6E-16 9E-21 170.1 26.2 242 148-518 19-293 (297)
142 1k32_A Tricorn protease; prote 99.7 7.8E-16 2.7E-20 201.0 33.8 299 195-526 110-501 (1045)
143 1ri6_A Putative isomerase YBHE 99.7 8.8E-16 3E-20 170.9 28.7 239 191-526 37-307 (343)
144 1xfd_A DIP, dipeptidyl aminope 99.7 1.2E-16 3.9E-21 198.9 23.0 315 147-529 33-395 (723)
145 3o4h_A Acylamino-acid-releasin 99.7 3E-16 1E-20 191.1 25.7 256 191-525 21-313 (582)
146 3vgz_A Uncharacterized protein 99.7 6.6E-15 2.3E-19 165.1 32.8 267 131-519 39-336 (353)
147 2z3z_A Dipeptidyl aminopeptida 99.7 1.7E-15 5.7E-20 188.3 29.6 286 192-527 82-435 (706)
148 1pby_B Quinohemoprotein amine 99.7 5E-15 1.7E-19 164.4 29.3 279 145-528 4-311 (337)
149 2ecf_A Dipeptidyl peptidase IV 99.7 1.3E-15 4.4E-20 190.2 26.9 279 192-526 109-458 (741)
150 3vgz_A Uncharacterized protein 99.7 3.5E-14 1.2E-18 159.2 30.3 240 192-527 41-303 (353)
151 3hfq_A Uncharacterized protein 99.6 5.4E-14 1.8E-18 158.7 29.2 248 191-526 39-316 (347)
152 2ojh_A Uncharacterized protein 99.6 2.6E-14 8.9E-19 154.4 24.3 213 208-527 17-258 (297)
153 1xfd_A DIP, dipeptidyl aminope 99.6 2.6E-15 9E-20 186.6 18.8 280 193-524 18-341 (723)
154 2z3z_A Dipeptidyl aminopeptida 99.6 5.3E-14 1.8E-18 174.7 30.3 304 135-525 84-474 (706)
155 1jmx_B Amine dehydrogenase; ox 99.6 5E-14 1.7E-18 157.4 26.9 284 142-497 10-335 (349)
156 2oit_A Nucleoporin 214KDA; NH2 99.6 6.4E-15 2.2E-19 174.3 18.2 111 417-527 147-278 (434)
157 1z68_A Fibroblast activation p 99.6 1.1E-14 3.7E-19 181.5 19.2 287 196-527 20-391 (719)
158 1z68_A Fibroblast activation p 99.6 2.4E-14 8.1E-19 178.4 21.9 324 147-528 32-444 (719)
159 1jmx_B Amine dehydrogenase; ox 99.6 8E-14 2.8E-18 155.7 23.6 263 197-527 5-325 (349)
160 3u4y_A Uncharacterized protein 99.6 3.6E-13 1.2E-17 150.3 28.6 222 198-527 4-252 (331)
161 3pe7_A Oligogalacturonate lyas 99.6 2.7E-13 9.3E-18 154.7 27.0 272 197-528 41-383 (388)
162 1q7f_A NHL, brain tumor CG1071 99.6 3.8E-12 1.3E-16 139.6 32.8 236 191-531 29-284 (286)
163 3scy_A Hypothetical bacterial 99.6 1.6E-12 5.4E-17 147.7 30.6 254 191-526 49-336 (361)
164 1pby_B Quinohemoprotein amine 99.5 3E-13 1E-17 150.0 23.6 242 142-499 45-322 (337)
165 2oit_A Nucleoporin 214KDA; NH2 99.5 1.5E-13 5E-18 162.6 19.1 176 137-348 43-229 (434)
166 1ri6_A Putative isomerase YBHE 99.5 1.3E-12 4.5E-17 145.1 24.7 220 204-526 6-261 (343)
167 1jof_A Carboxy-CIS,CIS-muconat 99.5 1.8E-12 6.1E-17 148.5 24.6 239 192-526 40-340 (365)
168 3hfq_A Uncharacterized protein 99.5 7.6E-12 2.6E-16 141.0 27.5 234 143-486 51-315 (347)
169 3fvz_A Peptidyl-glycine alpha- 99.4 2.1E-11 7.2E-16 137.8 28.4 251 191-527 23-322 (329)
170 4a5s_A Dipeptidyl peptidase 4 99.4 1.9E-12 6.5E-17 162.8 19.9 323 143-526 28-397 (740)
171 4a5s_A Dipeptidyl peptidase 4 99.4 1.1E-12 3.8E-17 164.9 17.1 279 193-527 18-353 (740)
172 3o4h_A Acylamino-acid-releasin 99.4 1.6E-12 5.4E-17 158.1 17.3 102 423-525 153-274 (582)
173 3scy_A Hypothetical bacterial 99.4 3.7E-10 1.3E-14 128.1 33.5 227 192-506 100-359 (361)
174 3azo_A Aminopeptidase; POP fam 99.4 2.8E-11 9.5E-16 149.1 25.8 278 131-525 22-365 (662)
175 4gz1_A Tyrosyl-DNA phosphodies 99.3 1.6E-11 5.5E-16 132.0 18.3 132 552-719 8-144 (256)
176 2oiz_A Aromatic amine dehydrog 99.3 1.7E-10 5.7E-15 132.8 27.3 82 425-509 259-360 (361)
177 1jof_A Carboxy-CIS,CIS-muconat 99.3 3.5E-11 1.2E-15 137.7 21.5 241 142-491 51-344 (365)
178 3c5m_A Oligogalacturonate lyas 99.3 8.9E-11 3E-15 133.6 24.1 288 194-526 38-381 (396)
179 2gop_A Trilobed protease; beta 99.3 4.8E-10 1.7E-14 125.8 28.7 95 428-526 223-330 (347)
180 2oiz_A Aromatic amine dehydrog 99.3 1.6E-10 5.3E-15 133.1 25.0 258 211-527 29-334 (361)
181 3fvz_A Peptidyl-glycine alpha- 99.3 3.4E-10 1.2E-14 127.9 27.2 226 152-489 70-323 (329)
182 3e5z_A Putative gluconolactona 99.3 4.5E-10 1.6E-14 124.0 26.8 222 191-518 27-278 (296)
183 3azo_A Aminopeptidase; POP fam 99.2 3.1E-10 1.1E-14 139.7 24.2 238 192-526 130-410 (662)
184 2dg1_A DRP35, lactonase; beta 99.2 5.1E-09 1.7E-13 117.1 31.2 222 191-517 44-300 (333)
185 1q7f_A NHL, brain tumor CG1071 99.2 4.3E-09 1.5E-13 115.2 29.6 225 143-487 41-279 (286)
186 4fva_A 5'-tyrosyl-DNA phosphod 99.2 8.8E-11 3E-15 126.4 15.1 132 551-718 11-147 (256)
187 2gop_A Trilobed protease; beta 99.2 1.3E-09 4.5E-14 122.3 23.8 98 423-526 174-290 (347)
188 4f1h_A Tyrosyl-DNA phosphodies 99.2 2.8E-10 9.4E-15 120.6 16.6 45 675-719 94-138 (250)
189 2bkl_A Prolyl endopeptidase; m 99.2 1.2E-09 4E-14 136.4 23.5 231 192-528 121-398 (695)
190 2xdw_A Prolyl endopeptidase; a 99.2 6.5E-09 2.2E-13 129.9 29.8 233 193-529 126-416 (710)
191 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 3.8E-08 1.3E-12 108.5 30.7 235 191-529 17-301 (314)
192 3pe7_A Oligogalacturonate lyas 99.1 5.9E-09 2E-13 118.7 24.8 257 233-527 22-329 (388)
193 3teb_A Endonuclease/exonucleas 99.1 8.7E-10 3E-14 119.9 16.9 45 674-718 120-164 (266)
194 4gew_A 5'-tyrosyl-DNA phosphod 99.1 3.7E-10 1.3E-14 130.5 14.5 134 550-719 116-254 (362)
195 2dg1_A DRP35, lactonase; beta 99.1 2.7E-09 9.2E-14 119.4 20.7 228 192-525 6-261 (333)
196 1ako_A Exonuclease III; AP-end 99.1 3.2E-10 1.1E-14 123.5 12.0 127 555-718 2-135 (268)
197 1rwi_B Serine/threonine-protei 99.1 2.6E-08 9E-13 107.4 26.0 231 193-528 25-265 (270)
198 3no2_A Uncharacterized protein 99.1 2.3E-08 7.9E-13 110.8 25.7 212 202-514 4-230 (276)
199 3dsm_A Uncharacterized protein 99.1 3E-08 1E-12 112.1 26.9 257 150-526 16-301 (328)
200 3e5z_A Putative gluconolactona 99.0 4.4E-08 1.5E-12 108.0 26.9 217 145-488 43-286 (296)
201 2z2n_A Virginiamycin B lyase; 99.0 1.6E-06 5.3E-11 94.3 37.5 265 191-525 14-293 (299)
202 3q7m_A Lipoprotein YFGL, BAMB; 99.0 1.1E-07 3.6E-12 108.8 29.5 332 122-524 27-375 (376)
203 3dsm_A Uncharacterized protein 99.0 7.5E-08 2.6E-12 108.8 27.8 235 133-495 44-309 (328)
204 2bkl_A Prolyl endopeptidase; m 99.0 1.8E-08 6.3E-13 125.6 24.8 230 150-499 146-408 (695)
205 3no2_A Uncharacterized protein 98.9 8.5E-08 2.9E-12 106.3 22.6 181 250-527 3-195 (276)
206 1yr2_A Prolyl oligopeptidase; 98.9 9.2E-08 3.1E-12 120.2 25.7 230 193-527 164-441 (741)
207 3c5m_A Oligogalacturonate lyas 98.9 7E-08 2.4E-12 109.5 21.8 107 418-527 186-329 (396)
208 2xdw_A Prolyl endopeptidase; a 98.9 1.5E-07 5.2E-12 117.5 26.0 93 152-271 152-268 (710)
209 3hxj_A Pyrrolo-quinoline quino 98.9 5.3E-08 1.8E-12 108.2 19.2 304 124-526 10-323 (330)
210 1zwx_A SMCL, sphingomyelinase- 98.9 2.7E-08 9.1E-13 110.7 16.4 46 674-719 128-179 (301)
211 3i41_A Beta-hemolysin; beta to 98.8 3.2E-08 1.1E-12 112.0 16.5 46 674-719 147-198 (317)
212 1qks_A Cytochrome CD1 nitrite 98.8 2.7E-06 9.2E-11 104.0 33.9 267 199-528 163-478 (567)
213 2qc5_A Streptogramin B lactona 98.8 1.3E-05 4.5E-10 86.9 35.9 263 191-524 19-297 (300)
214 1rwi_B Serine/threonine-protei 98.8 1.1E-06 3.7E-11 94.7 26.7 225 137-487 28-263 (270)
215 3g6s_A Putative endonuclease/e 98.8 4.5E-08 1.5E-12 107.0 15.1 134 553-719 3-158 (267)
216 1qks_A Cytochrome CD1 nitrite 98.8 4.2E-06 1.4E-10 102.2 33.6 287 148-527 174-538 (567)
217 2z2n_A Virginiamycin B lyase; 98.8 1.5E-05 5.2E-10 86.4 34.5 265 134-487 16-294 (299)
218 3hrp_A Uncharacterized protein 98.8 1.4E-06 4.8E-11 102.0 27.7 234 192-525 131-408 (409)
219 3dr2_A Exported gluconolactona 98.8 1.5E-06 5.2E-11 96.6 26.7 70 191-270 44-115 (305)
220 3l1w_A Uncharacterized protein 98.7 7.7E-08 2.6E-12 104.4 15.1 134 554-719 1-152 (257)
221 3mpr_A Putative endonuclease/e 98.7 6.5E-08 2.2E-12 108.1 14.4 136 551-719 4-162 (298)
222 2qe8_A Uncharacterized protein 98.7 7.6E-07 2.6E-11 101.1 22.9 268 192-524 17-318 (343)
223 3g4e_A Regucalcin; six bladed 98.7 4.6E-06 1.6E-10 92.4 28.2 216 195-513 16-258 (297)
224 2hz6_A Endoplasmic reticulum t 98.7 1.1E-08 3.7E-13 118.2 7.1 190 202-503 8-207 (369)
225 3iuj_A Prolyl endopeptidase; h 98.7 5.9E-07 2E-11 112.2 23.0 234 191-527 128-405 (693)
226 2ghs_A AGR_C_1268P; regucalcin 98.7 5.8E-06 2E-10 93.2 28.5 216 195-514 52-289 (326)
227 2ddr_A Sphingomyelin phosphodi 98.7 3.7E-07 1.3E-11 101.5 17.9 46 674-719 128-179 (306)
228 1yr2_A Prolyl oligopeptidase; 98.7 1.1E-06 3.8E-11 110.4 23.7 105 422-526 270-392 (741)
229 2jc4_A Exodeoxyribonuclease II 98.6 8.1E-08 2.8E-12 103.7 9.9 124 555-717 2-129 (256)
230 1pjx_A Dfpase, DIISOPROPYLFLUO 98.6 1.6E-05 5.5E-10 87.3 28.1 66 422-487 228-298 (314)
231 3sjl_D Methylamine dehydrogena 98.6 1E-05 3.5E-10 93.9 27.5 271 197-527 38-363 (386)
232 1xip_A Nucleoporin NUP159; bet 98.6 1.3E-06 4.3E-11 101.8 18.8 175 192-474 38-230 (388)
233 3q7m_A Lipoprotein YFGL, BAMB; 98.5 1.8E-05 6.1E-10 90.2 27.6 267 203-528 53-338 (376)
234 2mad_H Methylamine dehydrogena 98.5 0.00011 3.7E-09 84.9 32.0 271 198-528 27-351 (373)
235 2qc5_A Streptogramin B lactona 98.5 0.0004 1.4E-08 75.1 34.2 259 134-486 21-298 (300)
236 4a2l_A BT_4663, two-component 98.4 0.00027 9.2E-09 89.3 37.5 313 135-526 133-479 (795)
237 2jc5_A Exodeoxyribonuclease; h 98.4 3.9E-07 1.3E-11 98.4 9.8 38 554-595 2-40 (259)
238 1yiq_A Quinohemoprotein alcoho 98.4 8.3E-06 2.8E-10 102.0 22.9 53 478-530 454-508 (689)
239 4a2l_A BT_4663, two-component 98.4 0.00038 1.3E-08 87.9 38.1 316 133-526 263-613 (795)
240 2j63_A AP-endonuclease; base e 98.4 1.4E-06 4.8E-11 103.7 14.7 40 552-595 148-191 (467)
241 3g4e_A Regucalcin; six bladed 98.4 6.4E-05 2.2E-09 83.1 27.2 212 143-478 25-262 (297)
242 2o3h_A DNA-(apurinic or apyrim 98.4 3E-07 1E-11 101.5 7.4 40 552-595 27-67 (285)
243 2mad_H Methylamine dehydrogena 98.4 0.0002 6.9E-09 82.7 31.4 69 424-493 271-356 (373)
244 1vyb_A ORF2 contains A reverse 98.4 1.9E-06 6.5E-11 91.6 13.3 113 553-703 7-121 (238)
245 3hxj_A Pyrrolo-quinoline quino 98.4 2E-05 6.8E-10 87.2 21.8 256 134-487 61-323 (330)
246 1xip_A Nucleoporin NUP159; bet 98.3 1.2E-05 4.1E-10 93.6 19.0 154 137-348 44-200 (388)
247 2voa_A AF_EXO, XTHA, exodeoxyr 98.3 5.1E-06 1.7E-10 89.7 14.7 37 554-594 2-38 (257)
248 1kb0_A Quinohemoprotein alcoho 98.3 3.9E-05 1.3E-09 95.7 24.5 134 124-278 56-206 (677)
249 1wdu_A TRAS1 ORF2P; four-layer 98.3 3.8E-06 1.3E-10 90.7 13.4 119 553-717 19-142 (245)
250 3dr2_A Exported gluconolactona 98.3 3.4E-05 1.2E-09 85.6 21.6 186 191-483 85-302 (305)
251 3hrp_A Uncharacterized protein 98.3 0.00024 8.2E-09 83.0 29.3 106 138-273 136-251 (409)
252 2hz6_A Endoplasmic reticulum t 98.3 4.2E-07 1.4E-11 104.8 5.4 94 430-527 92-192 (369)
253 2ghs_A AGR_C_1268P; regucalcin 98.3 0.00017 5.8E-09 81.1 26.5 211 143-478 61-292 (326)
254 3sjl_D Methylamine dehydrogena 98.3 0.00048 1.6E-08 79.9 30.4 96 150-276 58-174 (386)
255 1hd7_A DNA-(apurinic or apyrim 98.3 1.3E-06 4.3E-11 98.7 8.5 39 552-594 60-99 (318)
256 3v9f_A Two-component system se 98.2 0.0019 6.3E-08 81.5 37.2 315 134-525 259-609 (781)
257 3v9f_A Two-component system se 98.2 0.0027 9.4E-08 79.9 37.6 323 133-526 66-435 (781)
258 1yiq_A Quinohemoprotein alcoho 98.1 0.00015 5.2E-09 90.6 24.7 81 439-519 454-541 (689)
259 3c75_H MADH, methylamine dehyd 98.1 0.00055 1.9E-08 80.6 27.8 94 151-275 99-213 (426)
260 3iuj_A Prolyl endopeptidase; h 98.1 7E-05 2.4E-09 93.4 20.5 105 422-526 236-358 (693)
261 2fp8_A Strictosidine synthase; 98.1 0.001 3.4E-08 74.3 27.8 103 423-526 188-312 (322)
262 3g91_A MTH0212, exodeoxyribonu 98.1 5E-06 1.7E-10 90.8 8.7 39 553-595 3-42 (265)
263 3c75_H MADH, methylamine dehyd 98.1 0.00064 2.2E-08 80.0 26.8 269 201-528 82-403 (426)
264 1mda_H Methylamine dehydrogena 98.0 0.00011 3.6E-09 85.1 19.1 90 152-271 47-158 (368)
265 1kb0_A Quinohemoprotein alcoho 97.9 0.00082 2.8E-08 83.7 25.2 73 439-512 456-535 (677)
266 2qe8_A Uncharacterized protein 97.9 0.00058 2E-08 77.2 20.4 64 462-525 197-276 (343)
267 1mda_H Methylamine dehydrogena 97.8 0.0011 3.9E-08 76.4 21.7 259 204-527 33-346 (368)
268 1kv9_A Type II quinohemoprotei 97.6 0.0028 9.5E-08 78.8 22.6 54 477-530 436-491 (668)
269 2ei9_A Non-LTR retrotransposon 97.5 0.00039 1.3E-08 75.3 11.2 37 553-593 7-43 (240)
270 1npe_A Nidogen, entactin; glyc 97.5 0.11 3.8E-06 55.7 30.4 70 193-271 37-110 (267)
271 1kv9_A Type II quinohemoprotei 97.4 0.03 1E-06 69.5 27.4 77 438-515 436-520 (668)
272 1npe_A Nidogen, entactin; glyc 97.3 0.21 7.1E-06 53.6 29.8 104 423-526 125-237 (267)
273 1w6s_A Methanol dehydrogenase 97.2 0.041 1.4E-06 67.5 26.3 53 477-530 451-506 (599)
274 3ngq_A CCR4-NOT transcription 97.2 0.0011 3.6E-08 77.4 10.6 31 689-719 195-225 (398)
275 4b8c_D Glucose-repressible alc 97.1 7.9E-05 2.7E-09 93.7 0.4 32 687-718 545-576 (727)
276 2iwa_A Glutamine cyclotransfer 97.0 0.12 4E-06 56.9 24.8 186 243-527 22-237 (266)
277 2ad6_A Methanol dehydrogenase 97.0 0.066 2.3E-06 65.2 25.1 120 140-278 60-192 (571)
278 2a40_B Deoxyribonuclease-1; WA 97.0 0.0004 1.4E-08 75.6 4.8 26 677-702 111-139 (260)
279 2fp8_A Strictosidine synthase; 96.9 0.15 5.2E-06 56.4 24.9 66 424-489 233-314 (322)
280 3nol_A Glutamine cyclotransfer 96.9 0.09 3.1E-06 57.6 22.1 173 242-515 43-243 (262)
281 2e6j_A Hydin protein; PAPD, st 96.9 0.0011 3.8E-08 62.8 5.9 68 967-1053 8-80 (112)
282 1flg_A Protein (quinoprotein e 96.8 0.22 7.6E-06 60.7 27.6 52 477-529 464-518 (582)
283 2ys4_A Hydrocephalus-inducing 96.8 0.005 1.7E-07 59.5 10.4 88 966-1100 28-115 (122)
284 3ott_A Two-component system se 96.8 1.5 5.1E-05 54.7 35.7 316 135-525 234-584 (758)
285 3nol_A Glutamine cyclotransfer 96.7 0.17 5.8E-06 55.3 22.1 113 195-349 46-163 (262)
286 2ece_A 462AA long hypothetical 96.5 0.25 8.7E-06 58.1 23.6 124 196-350 86-246 (462)
287 3mbr_X Glutamine cyclotransfer 96.5 0.47 1.6E-05 51.3 23.8 157 239-495 16-187 (243)
288 1flg_A Protein (quinoprotein e 96.5 2.5 8.7E-05 51.3 33.3 85 438-523 464-557 (582)
289 3v65_B Low-density lipoprotein 96.4 1.4 4.8E-05 50.4 29.1 72 191-271 115-190 (386)
290 2p4o_A Hypothetical protein; p 96.3 1.8 6E-05 47.5 29.5 72 192-273 32-106 (306)
291 2ad6_A Methanol dehydrogenase 96.2 1 3.5E-05 54.7 27.8 82 438-521 442-532 (571)
292 3sov_A LRP-6, low-density lipo 96.2 2.1 7.3E-05 47.7 28.8 101 145-271 7-110 (318)
293 2xe4_A Oligopeptidase B; hydro 96.1 0.13 4.4E-06 64.7 19.5 102 425-526 276-397 (751)
294 2iwa_A Glutamine cyclotransfer 95.9 0.12 4.2E-06 56.7 16.0 106 422-527 23-135 (266)
295 1w6s_A Methanol dehydrogenase 95.9 1.7 5.6E-05 53.2 27.6 78 438-516 451-536 (599)
296 1k3i_A Galactose oxidase precu 95.9 0.41 1.4E-05 59.0 22.4 71 196-273 247-325 (656)
297 1k3i_A Galactose oxidase precu 95.8 0.6 2E-05 57.5 23.6 71 196-272 190-275 (656)
298 3nok_A Glutaminyl cyclase; bet 95.8 0.27 9.2E-06 53.9 17.8 160 133-350 55-219 (268)
299 2xbg_A YCF48-like protein; pho 95.7 3.5 0.00012 45.9 31.0 104 419-524 204-319 (327)
300 1msp_A MSP, major sperm protei 95.6 0.16 5.5E-06 49.4 13.6 64 968-1053 8-76 (126)
301 3ott_A Two-component system se 95.6 7 0.00024 48.6 42.3 332 134-525 64-446 (758)
302 3v64_C Agrin; beta propeller, 95.6 4.1 0.00014 45.9 29.9 72 191-271 72-147 (349)
303 1fwx_A Nitrous oxide reductase 95.5 2.8 9.7E-05 50.9 26.6 70 421-490 332-433 (595)
304 1m1s_A WR4; structural genomic 95.3 0.091 3.1E-06 50.3 10.2 62 969-1052 11-73 (116)
305 1row_A SSP-19, MSP-domain prot 95.3 0.066 2.3E-06 50.8 9.2 61 969-1051 3-64 (109)
306 3mbr_X Glutamine cyclotransfer 95.1 1.3 4.3E-05 47.9 19.8 95 432-527 76-179 (243)
307 3m0c_C LDL receptor, low-densi 94.9 12 0.0004 47.3 31.5 77 191-271 423-502 (791)
308 1ijq_A LDL receptor, low-densi 94.8 6.2 0.00021 43.6 31.2 76 192-271 30-108 (316)
309 3nok_A Glutaminyl cyclase; bet 94.7 0.18 6.1E-06 55.3 12.0 104 422-528 57-165 (268)
310 3p5b_L Low density lipoprotein 94.7 7.9 0.00027 44.4 31.2 76 191-271 111-190 (400)
311 2ece_A 462AA long hypothetical 94.5 0.71 2.4E-05 54.3 17.3 90 438-527 226-352 (462)
312 1z9l_A Vesicle-associated memb 94.5 0.1 3.5E-06 50.8 8.7 62 969-1052 11-77 (128)
313 1sr4_B CDT B, cytolethal diste 94.5 0.18 6.3E-06 55.0 11.4 38 554-594 5-47 (261)
314 3tc9_A Hypothetical hydrolase; 94.4 7 0.00024 45.4 25.6 58 193-259 138-197 (430)
315 2cri_A Vesicle-associated memb 94.3 0.13 4.5E-06 51.4 9.0 63 969-1053 15-82 (147)
316 1wic_A Hypothetical protein ri 93.9 0.13 4.5E-06 51.6 8.1 63 969-1053 19-86 (152)
317 3v65_B Low-density lipoprotein 93.4 13 0.00046 42.2 29.0 103 422-524 204-315 (386)
318 2p4o_A Hypothetical protein; p 93.3 11 0.00038 41.0 28.1 110 133-271 32-147 (306)
319 2xbg_A YCF48-like protein; pho 93.3 7.4 0.00025 43.2 22.2 64 422-486 252-320 (327)
320 3p5b_L Low density lipoprotein 92.9 16 0.00055 41.8 29.5 106 422-527 204-320 (400)
321 4hw6_A Hypothetical protein, I 92.3 20 0.00069 41.6 29.2 59 193-260 140-200 (433)
322 2f1n_A CDT B, cytolethal diste 92.2 0.59 2E-05 50.8 10.5 37 676-718 130-166 (262)
323 3v64_C Agrin; beta propeller, 92.0 18 0.00063 40.4 30.2 103 422-524 161-272 (349)
324 1ijq_A LDL receptor, low-densi 91.4 19 0.00067 39.4 31.0 105 422-526 122-237 (316)
325 4a0p_A LRP6, LRP-6, low-densit 90.3 40 0.0014 41.1 31.9 72 191-271 36-111 (628)
326 3m0c_C LDL receptor, low-densi 89.4 54 0.0018 41.3 30.0 103 422-524 516-629 (791)
327 1fwx_A Nitrous oxide reductase 89.2 1 3.6E-05 54.6 10.0 78 243-341 278-361 (595)
328 2qsv_A Uncharacterized protein 88.0 1.3 4.3E-05 47.0 8.7 60 970-1052 4-68 (220)
329 3sov_A LRP-6, low-density lipo 87.7 37 0.0013 37.5 25.4 105 423-527 125-238 (318)
330 1n7d_A LDL receptor, low-densi 83.7 8.7 0.0003 47.7 14.5 76 420-495 540-622 (699)
331 1n7d_A LDL receptor, low-densi 82.2 2 6.8E-05 53.4 7.9 76 193-272 407-485 (699)
332 2xe4_A Oligopeptidase B; hydro 81.2 3.8 0.00013 51.3 10.0 107 421-528 175-305 (751)
333 3s94_A LRP-6, low-density lipo 79.5 1.2E+02 0.0041 36.8 24.6 74 191-271 39-115 (619)
334 4a0p_A LRP6, LRP-6, low-densit 78.1 1.3E+02 0.0045 36.5 39.9 293 193-525 124-461 (628)
335 3amr_A 3-phytase; beta-propell 77.0 1E+02 0.0036 34.8 25.3 60 200-270 37-107 (355)
336 3pbp_A Nucleoporin NUP82; beta 72.6 55 0.0019 38.2 15.5 117 137-271 27-158 (452)
337 4hw6_A Hypothetical protein, I 72.5 1.1E+02 0.0036 35.4 18.5 66 422-487 230-303 (433)
338 3kya_A Putative phosphatase; s 71.4 1.7E+02 0.0058 34.6 26.6 62 192-262 139-214 (496)
339 2p9w_A MAL S 1 allergenic prot 71.3 1.1E+02 0.0038 34.3 17.3 88 439-526 99-214 (334)
340 2qsv_A Uncharacterized protein 70.5 11 0.00037 39.7 8.5 65 966-1053 117-185 (220)
341 2ism_A Putative oxidoreductase 69.2 1.4E+02 0.0049 33.0 23.7 26 243-268 32-57 (352)
342 3a9g_A Putative uncharacterize 68.4 49 0.0017 37.1 14.0 69 420-488 29-114 (354)
343 3qqz_A Putative uncharacterize 67.9 1.3E+02 0.0046 32.1 22.6 112 134-270 28-150 (255)
344 3tc9_A Hypothetical hydrolase; 57.4 55 0.0019 37.7 12.0 106 420-526 137-256 (430)
345 3das_A Putative oxidoreductase 56.5 2.5E+02 0.0086 31.4 25.8 72 192-269 32-114 (347)
346 2ism_A Putative oxidoreductase 56.1 1.4E+02 0.0048 33.1 14.8 68 420-488 31-114 (352)
347 3amr_A 3-phytase; beta-propell 53.0 2.9E+02 0.01 31.2 22.4 106 420-526 128-262 (355)
348 3sre_A PON1, serum paraoxonase 52.2 47 0.0016 37.6 9.9 71 191-270 164-251 (355)
349 3qqz_A Putative uncharacterize 50.6 2.6E+02 0.0089 29.9 23.8 76 420-495 121-211 (255)
350 4gq2_M Nucleoporin NUP120; bet 49.0 46 0.0016 42.8 10.3 35 191-225 235-269 (950)
351 2p9w_A MAL S 1 allergenic prot 47.1 3.4E+02 0.012 30.3 21.3 69 195-270 16-108 (334)
352 1cru_A Protein (soluble quinop 43.4 1.7E+02 0.0057 34.0 13.2 58 193-256 28-95 (454)
353 1tl2_A L10, protein (tachylect 43.2 63 0.0022 34.4 8.4 71 192-269 41-114 (236)
354 3pbp_A Nucleoporin NUP82; beta 37.9 1.1E+02 0.0037 35.7 10.0 72 191-265 124-206 (452)
355 3ei3_A DNA damage-binding prot 35.7 8.7E+02 0.03 31.7 36.6 85 440-527 807-913 (1158)
356 3s94_A LRP-6, low-density lipo 35.0 6.7E+02 0.023 30.1 35.0 88 420-507 349-443 (619)
357 4gq2_M Nucleoporin NUP120; bet 33.3 1.1E+02 0.0038 39.2 10.1 36 314-349 238-274 (950)
358 1tl2_A L10, protein (tachylect 30.8 73 0.0025 33.9 6.5 67 195-267 91-159 (236)
359 3s25_A Hypothetical 7-bladed b 27.9 5.8E+02 0.02 27.6 13.7 81 440-524 88-173 (302)
360 3pt1_A UPF0364 protein YMR027W 26.8 10 0.00036 44.6 -1.0 17 792-808 373-389 (471)
361 2wg3_C Hedgehog-interacting pr 26.3 4.2E+02 0.014 30.8 12.7 58 193-252 15-79 (463)
362 2be1_A Serine/threonine-protei 24.6 7.5E+02 0.026 27.4 15.4 61 429-489 110-185 (339)
363 4fhn_B Nucleoporin NUP120; pro 23.9 1.2E+02 0.0043 39.5 8.3 33 317-349 243-276 (1139)
364 2g8s_A Glucose/sorbosone dehyd 23.2 4E+02 0.014 29.3 11.4 67 421-487 19-106 (353)
365 3kya_A Putative phosphatase; s 22.8 6.7E+02 0.023 29.4 13.6 105 421-526 140-277 (496)
366 2be1_A Serine/threonine-protei 20.8 61 0.0021 36.5 3.9 60 430-489 10-78 (339)
367 2xn4_A Kelch-like protein 2; s 20.8 2.8E+02 0.0097 29.1 9.2 79 440-518 173-262 (302)
No 1
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=100.00 E-value=4.2e-87 Score=748.46 Aligned_cols=306 Identities=31% Similarity=0.659 Sum_probs=276.6
Q ss_pred eeeeeceEEEEEEEEeCCCCCCchhhcccccCCCCCcceEEEEeeccccccchhhhhhhhhhccCCCCcchhhHHHHHhc
Q 001123 546 YTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGK 625 (1149)
Q Consensus 546 yt~~~~~~i~v~TWNv~~~~~~~~~l~~wl~~~~~~~Di~viGlQEi~~~~~~~~~~~~ke~~~~~~~~~~~~W~~~i~~ 625 (1149)
||..++++|+++|||||+..| .++|.+||.....+||||||||||++++++++.. .+++..+.|.+.|.+
T Consensus 2 yt~~~~~~i~v~TwNvng~~~-~~~l~~wL~~~~~~pDI~viGlQE~~l~~~~~~~---------~~~~~~~~W~~~i~~ 71 (313)
T 3mtc_A 2 YTYIQNFRFFAGTYNVNGQSP-KECLRLWLSNGIQAPDVYCVGFQELDLSKEAFFF---------HDTPKEEEWFKAVSE 71 (313)
T ss_dssp CEEEEEEEEEEEEEECTTCCC-CSCTHHHHSSSCCCCSEEEEEEECSCCSHHHHTT---------CCCHHHHHHHHHHHH
T ss_pred CceeeccEEEEEEEEcCCccC-chhHHHHhcccCCCCCeEEEEEEecccchhhhcc---------cCcchHHHHHHHHHH
Confidence 899999999999999998876 5789999997667899999999999987654322 234456789999999
Q ss_pred ccCCCCcEEEEeeeccceeeeeeeeeccccCccceeEeeeEeecccccccCcceeEEEEEEeceEEEEeeecccccchhH
Q 001123 626 ILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAV 705 (1149)
Q Consensus 626 ~L~~~~~y~~v~s~qL~Gl~l~vfvr~~l~~~i~~v~~~~v~tG~~g~~gNKGaV~ir~~~~~t~lcFVn~HLaA~~~~~ 705 (1149)
+|+.+.+|++|++.||+||+|+||||+++.++|++|++++|+||+||+|||||||+|||.+++|+|||||||||||++++
T Consensus 72 ~L~~~~~Y~~v~s~~lvGl~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~~~~ 151 (313)
T 3mtc_A 72 GLHPDAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEEY 151 (313)
T ss_dssp HSCTTSCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECSGGGTSTTSEEEEEEEEETTEEEEEEEEECCCSGGGH
T ss_pred hcCCCCCEEEEEEechhhhhhhhhhhhhhhhhcceeEeeeecccccccccCCceEEEEEEECCcEEEEEeeccCCCchHH
Confidence 99887899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCccccccCCCchhhhhhhhhhhhhhhhhhhccCCchhhhhhccccchhhhcccCCCCCCC
Q 001123 706 NRRNADFDHVYRTMTFCRPSNLCSAAAGTMPFLLLSCVLACSMYLLWLVYRSGLPLVLYIAAGASSVVQMLRSTNPLSGL 785 (1149)
Q Consensus 706 ~~Rn~d~~~I~~~l~F~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1149)
++||+||.+|++++.|.+.....
T Consensus 152 ~~Rn~d~~~I~~~l~f~~~~~~~--------------------------------------------------------- 174 (313)
T 3mtc_A 152 ERRNQDYKDICSRMQFCQPDPSL--------------------------------------------------------- 174 (313)
T ss_dssp HHHHHHHHHHHHHCCBCCSCSSS---------------------------------------------------------
T ss_pred HHHHHHHHHHHHhcccCCCCCcc---------------------------------------------------------
Confidence 99999999999999997532110
Q ss_pred cccCCCcccCccEEEEECccCCCCCCCChHHHHHHHhhcChHHHHHhhHHHHHhHcCCcCCCCccCCcccCCCccccccc
Q 001123 786 TVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHL 865 (1149)
Q Consensus 786 ~~~~~~~i~~~D~vfw~GDlNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~g~~f~gf~E~~I~F~PTYKyd~~~ 865 (1149)
....|.+||+|||||||||||+++++++++++|++++|+.|+++|||++||++|++|.||+|++|+|||||||++|
T Consensus 175 ---~~~~i~~~d~vfw~GDLNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~g~~f~gf~E~~I~F~PTYKyd~~- 250 (313)
T 3mtc_A 175 ---PPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTG- 250 (313)
T ss_dssp ---CCBCTTSSSEEEEEEECCCCBCSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSCTTCBCCCCCSCCCBCBCTT-
T ss_pred ---CCccccCCceEEEeccccccccCCCHHHHHHHHhcCCHHHHHHhHHHHHHHHcCCccCCcccCCcCcCCCccCcCC-
Confidence 0023578999999999999998779999999999999999999999999999999999999999999999999985
Q ss_pred cCCccccCCCCccccccccceeeecCCCccccccccCCCcccceeeeeeecccccCCCCceeeEEEEEccccC
Q 001123 866 AGLAGYDSGEKKRVPAWCDRILYRDSRSDLASECSLECPVASSILRYEACMDVTDSDHKPVRCIFSVDIARVD 938 (1149)
Q Consensus 866 ~g~~~yDts~k~R~PsWcDRIL~~~~~~~~~~~~~~~~p~~~~~~~Y~s~~~~~~SDHkPV~a~f~v~v~~vd 938 (1149)
++.||||+|+|+|||||||||++.. .+++.|.|++++++||||||+|.|.+++++|-
T Consensus 251 --s~~ydts~k~R~PsWcDRIL~~~~~--------------i~~~~Y~s~~~~~~SDHrPV~a~f~~~~~~~~ 307 (313)
T 3mtc_A 251 --SDDWDTSEKCRAPAWCDRILWKGKN--------------ITQLSYQSHMALKTSDHKPVSSVFDIGVRVVA 307 (313)
T ss_dssp --SSSBCCSTTCCCCBCCEEEEEEESS--------------EEEEEEEECTTCCSSSSCCEEEEEEEEEEEEC
T ss_pred --CcccccccCEecccccceEEEecCC--------------eEEEeeeeccCccCCCccCeEEEEEEEEEEee
Confidence 4689999999999999999999753 14689999999999999999999999998763
No 2
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=100.00 E-value=3.4e-81 Score=702.44 Aligned_cols=292 Identities=30% Similarity=0.541 Sum_probs=244.1
Q ss_pred eeeceEEEEEEEEeCCCCCCchhhcccccCC-----------CCCcceEEEEeeccccccchhhhhhhhhhccCCCCcch
Q 001123 548 RMENLKILAGTWNVGQGRASQDALISWLGSA-----------ASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVG 616 (1149)
Q Consensus 548 ~~~~~~i~v~TWNv~~~~~~~~~l~~wl~~~-----------~~~~Di~viGlQEi~~~~~~~~~~~~ke~~~~~~~~~~ 616 (1149)
++..++|+++|||||++.| +++|.+||... ..+||||||||||+.+. .
T Consensus 4 ~~~~i~i~vgTwNv~g~~p-~~~L~~wl~~~~~~~~~~~~~~~~~~DiyviG~QE~~~~--------------------~ 62 (316)
T 4a9c_A 4 EPDMISVFIGTWNMGSVPP-PKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVG--------------------D 62 (316)
T ss_dssp --CEEEEEEEEEECTTSCC-CSCCHHHHTTCSEEECCCTTGGGSCCSEEEEEEESCCSC--------------------H
T ss_pred CCCeEEEEEEEeEcCCcCC-CcchhHhhcccccccCcccccccCCCcEEEEeccccccc--------------------h
Confidence 4567899999999997655 57899999742 13589999999998531 3
Q ss_pred hhHHHHHhcccCC--CCcEEEEeeeccceeeeeeeeeccccCccceeEeeeEeecccccccCcceeEEEEEEeceEEEEe
Q 001123 617 HWWLDMIGKILDD--GSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFV 694 (1149)
Q Consensus 617 ~~W~~~i~~~L~~--~~~y~~v~s~qL~Gl~l~vfvr~~l~~~i~~v~~~~v~tG~~g~~gNKGaV~ir~~~~~t~lcFV 694 (1149)
+.|.+.|.++|+. ...|.+|+++||+||+|+||||+++.++|++|++++|+||+||+|||||||+|||.+++++||||
T Consensus 63 ~~W~~~i~~~L~~~~~~~Y~~v~s~~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~~FV 142 (316)
T 4a9c_A 63 REWLDLLRGGLKELTDLDYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFV 142 (316)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEEEEEETTEEEEEEECGGGGGGEEEEEEEEEEEC------CEEEEEEEEEETTEEEEEE
T ss_pred hHHHHHHHHHhccccCCCEEEEEeeeehheeeeeEEeHHHhhhCcccccceeeeeeeEecCCCceEEEEEEECCcEEEEE
Confidence 5699999999974 45799999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccchhHHHHHHHHHHHHHhcccCCCCCccccccCCCchhhhhhhhhhhhhhhhhhhccCCchhhhhhccccchhh
Q 001123 695 NCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAGTMPFLLLSCVLACSMYLLWLVYRSGLPLVLYIAAGASSVVQ 774 (1149)
Q Consensus 695 n~HLaA~~~~~~~Rn~d~~~I~~~l~F~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1149)
|||||||++++++||+||.+|++++.|+.....
T Consensus 143 n~HLaAg~~~~~~Rn~d~~~I~~~l~f~~~~~~----------------------------------------------- 175 (316)
T 4a9c_A 143 NCHLTSGNEKTARRNQNYLDILRLLSLGDRQLN----------------------------------------------- 175 (316)
T ss_dssp EEECCCSTTCHHHHHHHHHHHHHHCCC-----------------------------------------------------
T ss_pred EeccccCchHHHHHHHHHHHHHHhCCCCCCCcC-----------------------------------------------
Confidence 999999999999999999999999998642100
Q ss_pred hcccCCCCCCCcccCCCcccCccEEEEECccCCCCCCCChHHHHHHHhhcChHHHHHhhHHHHHhHcCCcCCCCccCCcc
Q 001123 775 MLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIK 854 (1149)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~i~~~D~vfw~GDlNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~g~~f~gf~E~~I~ 854 (1149)
......+||+|||||||||||+. ++++++++|++++|+.|+++|||++||++|++|.||+|++|+
T Consensus 176 --------------~~d~~~~~d~vfw~GDLNyRi~~-~~~~v~~~i~~~~~~~Ll~~DQL~~e~~~g~~F~gf~E~~i~ 240 (316)
T 4a9c_A 176 --------------AFDISLRFTHLFWFGDLNYRLDM-DIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEIS 240 (316)
T ss_dssp ---------------CCTTTTSSEEEEEEECCCCBSS-CHHHHHHHHHTTCCHHHHTTBHHHHHHHTTSSSTTCBCCCCC
T ss_pred --------------ccccCCcCCeEEEcCCccCCcCC-CHHHHHHHHhcccHHHHhccChHHHHHhcCCcccccccCCcc
Confidence 00012468999999999999985 999999999999999999999999999999999999999999
Q ss_pred cCCCccccccccCCcccc------CCCCccccccccceeeecCCCccccccccCCCcccceeeeeeecccccCCCCceee
Q 001123 855 FPPTYKFEKHLAGLAGYD------SGEKKRVPAWCDRILYRDSRSDLASECSLECPVASSILRYEACMDVTDSDHKPVRC 928 (1149)
Q Consensus 855 F~PTYKyd~~~~g~~~yD------ts~k~R~PsWcDRIL~~~~~~~~~~~~~~~~p~~~~~~~Y~s~~~~~~SDHkPV~a 928 (1149)
|||||||++|+. +.|+ +++|+|+|||||||||++..... ..++.|.|++++++||||||+|
T Consensus 241 F~PTYKy~~~s~--~~y~~~~~~~~~~k~R~PaWcDRIL~~~~~~~~-----------i~~~~Y~s~~~~~~SDHrPV~a 307 (316)
T 4a9c_A 241 FPPTYRYERGSR--DTYAWHKQKPTGVRTNVPSWCDRILWKSYPETH-----------IICNSYGCTDDIVTSDHSPVFG 307 (316)
T ss_dssp SCCCBCBCTTCS--SCBCCC--------CCCCBCCEEEEEEECTTCC-----------EEEEEEEECSSCCSSSSCCEEE
T ss_pred cCCCccccCCCc--ccccccccccccccccCCcccceEEeccCCCCc-----------eEEeeecccCCcCCCCcccEEE
Confidence 999999998764 2453 67889999999999999864321 2458899999999999999999
Q ss_pred EEEEEcc
Q 001123 929 IFSVDIA 935 (1149)
Q Consensus 929 ~f~v~v~ 935 (1149)
.|+|+|.
T Consensus 308 ~f~v~V~ 314 (316)
T 4a9c_A 308 TFEVGVT 314 (316)
T ss_dssp EEEEECC
T ss_pred EEEEEEE
Confidence 9999874
No 3
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=100.00 E-value=2.6e-78 Score=693.49 Aligned_cols=330 Identities=30% Similarity=0.546 Sum_probs=292.4
Q ss_pred CCCchhhhhhccccccceeeeeceEEEEEEEEeCCCCCCchhhcccccCC-CCCcceEEEEeecc-ccccchhhhhhhhh
Q 001123 529 GPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSA-ASDVGIVVVGLQEV-EMGAGFLAMSAAKE 606 (1149)
Q Consensus 529 ~pld~~i~~~l~~re~~yt~~~~~~i~v~TWNv~~~~~~~~~l~~wl~~~-~~~~Di~viGlQEi-~~~~~~~~~~~~ke 606 (1149)
+|++++++++|.+|+.+|+..++++|+++|||||+..| .++|.+||... ..+||||||||||+ +|+++++..
T Consensus 2 ~p~~~~~~~~l~~r~~e~~~~~~~~i~v~TwNv~g~~~-~~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~----- 75 (347)
T 1i9z_A 2 DPIHEYVNHELRKRENEFSEHKNVKIFVASYNLNGCSA-TTKLENWLFPENTPLADIYVVGFQEIVQLTPQQVIS----- 75 (347)
T ss_dssp CHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEECTTCCC-CSCCHHHHSCSSSCCCSEEEEEEECSSCCC-----C-----
T ss_pred CchHHHHHHHHHHHHHhcCCCCCcEEEEEeEecCCCCC-chhHHHHhccccCCCCCEEEEEeEEeecCchhhhcc-----
Confidence 68999999999999999999999999999999998776 56799999853 36799999999998 787765432
Q ss_pred hccCCCCcchhhHHHHHhcccC----CCCcEEEEeeeccceeeeeeeeeccccCccceeEeeeEeecccccccCcceeEE
Q 001123 607 TVGLEGSAVGHWWLDMIGKILD----DGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGL 682 (1149)
Q Consensus 607 ~~~~~~~~~~~~W~~~i~~~L~----~~~~y~~v~s~qL~Gl~l~vfvr~~l~~~i~~v~~~~v~tG~~g~~gNKGaV~i 682 (1149)
.++...+.|.+.|.++|+ .+..|.++.+.||+|++|+||+|+++.++|++|++++|+||++|++||||||++
T Consensus 76 ----~~~~~~~~w~~~i~~~L~~~~~~~~~Y~~v~s~~l~g~~L~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gnKGav~v 151 (347)
T 1i9z_A 76 ----ADPAKRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAI 151 (347)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHTCCSSCCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEEE
T ss_pred ----cCchhHHHHHHHHHHHHhhcccCCCceeEEEEeeccceEEEEEEehHhhhhccceeeeeEeccCCCccCCCceEEE
Confidence 123345789999999996 357899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeceEEEEeeecccccchhHHHHHHHHHHHHHhcccCCCCCccccccCCCchhhhhhhhhhhhhhhhhhhccCCchh
Q 001123 683 RVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAGTMPFLLLSCVLACSMYLLWLVYRSGLPLV 762 (1149)
Q Consensus 683 r~~~~~t~lcFVn~HLaA~~~~~~~Rn~d~~~I~~~l~F~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 762 (1149)
||.+++++||||||||+||++++++||+||.+|+++|.|...
T Consensus 152 r~~~~~~~l~fvn~HLaa~~~~~~~R~~d~~~I~~~l~f~~~-------------------------------------- 193 (347)
T 1i9z_A 152 RFDYEDTGLCFITSHLAAGYTNYDERDHDYRTIASGLRFRRG-------------------------------------- 193 (347)
T ss_dssp EEEETTEEEEEEEEECCCCSSCHHHHHHHHHHHHHHCCCGGG--------------------------------------
T ss_pred EEEECCeEEEEEEecCCCCCccHHHHHHHHHHHHHhhccCcc--------------------------------------
Confidence 999999999999999999999999999999999999987531
Q ss_pred hhhhccccchhhhcccCCCCCCCcccCCCcccCccEEEEECccCCCCCCCChHHHHHHHhhcChHHHHHhhHHHHHhHcC
Q 001123 763 LYIAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAG 842 (1149)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~vfw~GDlNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~g 842 (1149)
..+.+||++||||||||||+. +.++++++|.+++|+.|+++|||+++|++|
T Consensus 194 ----------------------------~~i~~~d~v~~~GDlNyRi~~-~~~~v~~~i~~~~~~~Ll~~DqL~~~~~~~ 244 (347)
T 1i9z_A 194 ----------------------------RSIFNHDYVVWFGDFNYRISL-TYEEVVPCIAQGKLSYLFEYDQLNKQMLTG 244 (347)
T ss_dssp ----------------------------CCTTSSSEEEEEEECCCCBSS-CHHHHHHHHHTTCHHHHHTTBHHHHHHHTT
T ss_pred ----------------------------cccccCccEEEecccccccCC-CHHHHHHHHhhccHHHhhcccHHHHHHhcC
Confidence 124578999999999999995 999999999999999999999999999999
Q ss_pred CcCCCCccCCcccCCCccccccccCCccccCCCCccccccccceeeecCCCccccccccCCCcccceeeeeeecccccCC
Q 001123 843 NVFQGMREADIKFPPTYKFEKHLAGLAGYDSGEKKRVPAWCDRILYRDSRSDLASECSLECPVASSILRYEACMDVTDSD 922 (1149)
Q Consensus 843 ~~f~gf~E~~I~F~PTYKyd~~~~g~~~yDts~k~R~PsWcDRIL~~~~~~~~~~~~~~~~p~~~~~~~Y~s~~~~~~SD 922 (1149)
++|.||+|++|+|+|||||+.+ ++.||||+|+|+|||||||||++. .+++.|++++ +..||
T Consensus 245 ~~f~~f~E~~i~F~PTYK~~~~---~~~yd~s~k~R~PsWcDRIL~~~~---------------l~~~~Y~~~~-~~~SD 305 (347)
T 1i9z_A 245 KVFPFFSELPITFPPTYKFDIG---TDIYDTSDKHRVPAWTDRILYRGE---------------LVPHSYQSVP-LYYSD 305 (347)
T ss_dssp SSSTTCBCCCCCSCCCBCBCTT---SSCBCCSTTCCCCBCCEEEEEESS---------------CEEEEEEECC-CCSSS
T ss_pred CcccccccCCCCCCCCcccCCC---CccccccccccCCcccceEEEeCC---------------EEEEEEEecC-ccCCC
Confidence 9999999999999999999985 468999999999999999999861 1357899987 99999
Q ss_pred CCceeeEEEEEccccCHHHHHHHHHHHhhcch
Q 001123 923 HKPVRCIFSVDIARVDESVRRQEFGDIMTSNE 954 (1149)
Q Consensus 923 HkPV~a~f~v~v~~vd~~~~~~~~~~i~~~~~ 954 (1149)
||||+|.|.+.++.+|+++|++++++|+++..
T Consensus 306 H~PV~a~f~~~v~~~~~~~~~~~~~~~~~~~~ 337 (347)
T 1i9z_A 306 HRPIYATYEANIVKVDREKKKILFEELYNQRK 337 (347)
T ss_dssp BCCEEEEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred cCCceeEEEEEEecCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998643
No 4
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.1e-75 Score=672.91 Aligned_cols=305 Identities=26% Similarity=0.457 Sum_probs=265.6
Q ss_pred cceeeeeceEEEEEEEEeCCCCCCchhhcccccCC--CCCcceEEEEeeccccccchhhhhhhhhhccCCCCcchhhHHH
Q 001123 544 FLYTRMENLKILAGTWNVGQGRASQDALISWLGSA--ASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLD 621 (1149)
Q Consensus 544 ~~yt~~~~~~i~v~TWNv~~~~~~~~~l~~wl~~~--~~~~Di~viGlQEi~~~~~~~~~~~~ke~~~~~~~~~~~~W~~ 621 (1149)
.+|+..++++|+++|||||+.++.+++|.+||... ...||||||||||++.. .+.|.+
T Consensus 18 ~~~~~~~~l~i~v~TwNv~g~~~~~~~L~~~l~~~~~~~~pDI~viGlQEi~~~--------------------~~~W~~ 77 (357)
T 2xsw_A 18 ARYFPDRNVALFVATWNMQGQKELPPSLDEFLLPAEADYAQDLYVIGVQEGCSD--------------------RREWET 77 (357)
T ss_dssp HHHCTTCEEEEEEEEEECTTCSSCCSCCHHHHSCTTCCSCCSEEEEEEESCCSC--------------------HHHHHH
T ss_pred hhcCCCCCceEEEEEEecCCCCCCcccHHHHhccccccCCCCEEEEEeeeccch--------------------HHHHHH
Confidence 56788899999999999998776677899999642 34689999999998531 246999
Q ss_pred HHhcccCCCCcEEEEeeeccceeeeeeeeeccccCccceeEeeeEeecccccccCcceeEEEEEEeceEEEEeeeccccc
Q 001123 622 MIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAH 701 (1149)
Q Consensus 622 ~i~~~L~~~~~y~~v~s~qL~Gl~l~vfvr~~l~~~i~~v~~~~v~tG~~g~~gNKGaV~ir~~~~~t~lcFVn~HLaA~ 701 (1149)
.|.++|+ ..|+++.+.+|+|++|+||+|+++.++|++|++++|+||+||++||||||+|||.+++++|||||||||||
T Consensus 78 ~l~~~L~--~~Y~~v~s~~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~vr~~~~~t~~~Fvn~HLaa~ 155 (357)
T 2xsw_A 78 RLQETLG--PHYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSG 155 (357)
T ss_dssp HHHHHHC--TTEEEEEEEEETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEECCCS
T ss_pred HHHHHhC--CcccchhhhhhhhEEEEEEEchHHhhcCceeEecccccccccccccccEEEEEEEECCeEEEEEEEccCCC
Confidence 9999995 47999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHhcccCCCCCccccccCCCchhhhhhhhhhhhhhhhhhhccCCchhhhhhccccchhhhcccCCC
Q 001123 702 LEAVNRRNADFDHVYRTMTFCRPSNLCSAAAGTMPFLLLSCVLACSMYLLWLVYRSGLPLVLYIAAGASSVVQMLRSTNP 781 (1149)
Q Consensus 702 ~~~~~~Rn~d~~~I~~~l~F~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1149)
++++++||+||.+|+++|.|++..... .|+. .
T Consensus 156 ~~~~~~Rn~d~~~I~~~l~f~~~~~~~------~~~~---------------------------------------~--- 187 (357)
T 2xsw_A 156 DGKVAERLLDYTRTVQALVLPRNVPDT------NPYR---------------------------------------S--- 187 (357)
T ss_dssp TTCHHHHHHHHHHHHHHCCCCSSSCCS------SGGG---------------------------------------C---
T ss_pred CchHHHHHHHHHHHHHHhccccccccc------cccc---------------------------------------c---
Confidence 999999999999999999997532210 1110 0
Q ss_pred CCCCcccCCCcccCccEEEEECccCCCCCCCChHHHHHHHh---hcChHHHHHhhHHHHHhHcCCcCCCCccCCcccCCC
Q 001123 782 LSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFIS---QRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPT 858 (1149)
Q Consensus 782 ~~~~~~~~~~~i~~~D~vfw~GDlNyRi~~~~~~~v~~~i~---~~~~~~Ll~~DQL~~~~~~g~~f~gf~E~~I~F~PT 858 (1149)
.....+.+||+|||||||||||++ ++++++++++ +++|+.|+++|||+++|++|++|.||+|++|+||||
T Consensus 188 ------~~~~~~~~~d~vfw~GDlNyRi~~-~~~~v~~~i~~~~~~~~~~Ll~~DQL~~~~~~g~~F~gf~E~~I~F~PT 260 (357)
T 2xsw_A 188 ------SAADVTTRFDEVFWFGDFNFRLSG-GRTVVDALLCQGLVVDVPALLQHDQLIREMRKGSIFKGFQEPDIHFLPS 260 (357)
T ss_dssp ------BTTBGGGSSSEEEEEEECCCCBSS-CHHHHHHHHC---CCCHHHHHTTBHHHHHHHHTSSSTTCBCCCCCSCCC
T ss_pred ------cccccccccceEEEecccCccccc-chHHHHHHHhhcchhhHHHHHhcChhHHHHhccccccCccccCCCCCCC
Confidence 001124579999999999999996 8899999996 478999999999999999999999999999999999
Q ss_pred ccccccccCCccccCCCCccccccccceeeecCCCccccccccCCCcccceeeeeeecccccCCCCceeeEEEEEccccC
Q 001123 859 YKFEKHLAGLAGYDSGEKKRVPAWCDRILYRDSRSDLASECSLECPVASSILRYEACMDVTDSDHKPVRCIFSVDIARVD 938 (1149)
Q Consensus 859 YKyd~~~~g~~~yDts~k~R~PsWcDRIL~~~~~~~~~~~~~~~~p~~~~~~~Y~s~~~~~~SDHkPV~a~f~v~v~~vd 938 (1149)
|||+.++ +.||||+|+|+|||||||||++..... .+++.|++++++++||||||+|.|.+.++..+
T Consensus 261 YKy~~~t---~~Ydts~k~R~PaWcDRIL~~~~~~~~-----------i~~~~Y~s~~~~~~SDHrPV~a~f~v~v~~~~ 326 (357)
T 2xsw_A 261 YKFDIGK---DTYDSTSKQRTPSYTDRVLYRSRHKGD-----------ICPVSYSSCPGIKTSDHRPVYGLFRVKVRPGR 326 (357)
T ss_dssp BCBCTTS---SSBCCSTTCCCCBCCEEEEEEESSTTS-----------EEEEEEEECTTCCSSSSCCEEEEEEEECCCCC
T ss_pred ccccCCC---ccccccCCCCCCcccceEEEecCCCCc-----------eEEEEeEecccccCCCcCCceeEEEEEEecCC
Confidence 9999854 689999999999999999999864321 24689999999999999999999999998765
Q ss_pred H
Q 001123 939 E 939 (1149)
Q Consensus 939 ~ 939 (1149)
+
T Consensus 327 ~ 327 (357)
T 2xsw_A 327 D 327 (357)
T ss_dssp S
T ss_pred c
Confidence 4
No 5
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=100.00 E-value=4.5e-60 Score=530.85 Aligned_cols=276 Identities=20% Similarity=0.374 Sum_probs=238.4
Q ss_pred eeceEEEEEEEEeCCCCCCchhhcccccCC-CCCcceEEEEeeccccccchhhhhhhhhhccCCCCcchhhHHHHHhccc
Q 001123 549 MENLKILAGTWNVGQGRASQDALISWLGSA-ASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKIL 627 (1149)
Q Consensus 549 ~~~~~i~v~TWNv~~~~~~~~~l~~wl~~~-~~~~Di~viGlQEi~~~~~~~~~~~~ke~~~~~~~~~~~~W~~~i~~~L 627 (1149)
.++++|+|+||||++..++ ++|.+|+... ..+||||||||||+++.+.. ....+.|.+.|.++|
T Consensus 4 ~~~~~i~V~T~Nv~~~~~~-~~l~~wl~~~~~~~pDI~viglQEv~~~~~~--------------~~~~~~w~~~l~~~L 68 (282)
T 2imq_X 4 PAQLSVHTVSWNSGHERAP-TNLEELLGLNSGETPDVIAVAVQGFGFQTDK--------------PQQGPACVKNFQSLL 68 (282)
T ss_dssp CSEEEEEEEEEEEETCCCC-SCCHHHHTCTTSCCCSEEEEEEEESCTTTCT--------------TCCHHHHHHHHHHHH
T ss_pred CCCcEEEEEEEeCCCCcCc-hhHHHHhcccccCCCCEEEEEeeeecccccc--------------chhhHHHHHHHHHhc
Confidence 3568999999999877664 5789999742 36799999999999865421 123567999999999
Q ss_pred CCCCcEEEEee--eccceeeeeeeeeccccCccceeEeeeEeecccccccCcceeEEEEEEeceEEEEeeecccccchhH
Q 001123 628 DDGSTFERVGS--RQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAV 705 (1149)
Q Consensus 628 ~~~~~y~~v~s--~qL~Gl~l~vfvr~~l~~~i~~v~~~~v~tG~~g~~gNKGaV~ir~~~~~t~lcFVn~HLaA~~~~~ 705 (1149)
+ ...|.++.+ .+|+|++|+||+|+++.+.|+++++ +|++|.+||||||++||.+++++||||||||+|+++++
T Consensus 69 ~-~~~Y~~v~~~~~~~~G~~l~vf~k~~~~~~i~~~~~----~~~~g~~g~kGav~~r~~~~~~~~~fvn~HL~~~~~~~ 143 (282)
T 2imq_X 69 T-SKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETI----IVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTS 143 (282)
T ss_dssp H-HTTEEEEEEEECSSEEEEEEEEGGGCCTTTCCCEEE----EEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCCT
T ss_pred C-CCceEEEEeccCceeEEEEEEEEccccCccceeeee----ccccccccCCceEEEEEEECCEEEEEEEECCCCCCchH
Confidence 6 467999999 9999999999999999999988865 56778899999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHhcccCCCCCccccccCCCchhhhhhhhhhhhhhhhhhhccCCchhhhhhccccchhhhcccCCCCCCC
Q 001123 706 NRRNADFDHVYRTMTFCRPSNLCSAAAGTMPFLLLSCVLACSMYLLWLVYRSGLPLVLYIAAGASSVVQMLRSTNPLSGL 785 (1149)
Q Consensus 706 ~~Rn~d~~~I~~~l~F~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1149)
++||+|++.|++++.+
T Consensus 144 ~~R~~~~~~I~~~~~~---------------------------------------------------------------- 159 (282)
T 2imq_X 144 TNTKYAYDTRLDYSKK---------------------------------------------------------------- 159 (282)
T ss_dssp TSSSSSCCGGGCTTSS----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhhc----------------------------------------------------------------
Confidence 9999999888765421
Q ss_pred cccCCCcccCccEEEEECccCCCCCCCChHHHHHHHhhcChHHHHHhhHHHHHhHcCCcCCCCccCCcccCCCccccccc
Q 001123 786 TVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHL 865 (1149)
Q Consensus 786 ~~~~~~~i~~~D~vfw~GDlNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~g~~f~gf~E~~I~F~PTYKyd~~~ 865 (1149)
+.++|+||||||||||++. +.++++++|++++|+.|+++|||+.+++ |++|.||+|++|+|+|||||+.++
T Consensus 160 -------~~~~~~vi~~GDfN~r~~~-~~~~~~~~i~~~~~~~l~~~DqL~~~~~-~~~f~~f~e~~i~f~PTYk~~~~~ 230 (282)
T 2imq_X 160 -------DDPSDFLFWIGDLNVRVET-NATHAKSLVDQNNIDGLMAFDQLKKAKE-QKLFDGWTEPQVTFKPTYKFKPNT 230 (282)
T ss_dssp -------SSCCSEEEEEEECSCCBCS-CHHHHHHHHHTTCHHHHHTTBTHHHHHH-TTSSTTCBCCCCCSCCCBCBCTTS
T ss_pred -------cCccceEEEecccccccCC-CHHHHHHHHhhccHHHHhhhhHHHHhhc-cccccccccCCcCCCCCccccCCC
Confidence 2357899999999999997 8999999999999999999999999999 999999999999999999999854
Q ss_pred cCCccccCCCCccccccccceeeecCCCccccccccCCCcccceeeeeeecccccCCCCceeeEEEEEc
Q 001123 866 AGLAGYDSGEKKRVPAWCDRILYRDSRSDLASECSLECPVASSILRYEACMDVTDSDHKPVRCIFSVDI 934 (1149)
Q Consensus 866 ~g~~~yDts~k~R~PsWcDRIL~~~~~~~~~~~~~~~~p~~~~~~~Y~s~~~~~~SDHkPV~a~f~v~v 934 (1149)
+.||+ +|+|||||||||++..... .+++.|.+++++..||||||+|.|.+++
T Consensus 231 ---~~y~~---~R~Psw~DrIl~~~~~~~~-----------~~~~~y~~~~~~~~SDH~PV~a~f~~~~ 282 (282)
T 2imq_X 231 ---DEYDL---SATPSWTDRALYKSGTGKT-----------IQPLSYNSLTNYKQTEHRPVLAKFRVTL 282 (282)
T ss_dssp ---SCBCT---TSCCBCCEEEEEECSSSCC-----------EEEEEEEECTTCCSSSSCCEEEEEEEEC
T ss_pred ---ccccc---cCCccccceEEEecCCCCc-----------eEeeEecCCCCCCCCCcCCeEEEEEEEC
Confidence 68985 6999999999999753221 2468999999999999999999999864
No 6
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.5e-35 Score=346.93 Aligned_cols=267 Identities=18% Similarity=0.209 Sum_probs=227.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
.++|.|++|+|++.+|+||+.||+|++||+.++.+ ..+++||.++|++|+|+|+|+ |+|||.|++|||||+
T Consensus 108 ~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~--------~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF--------ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 179 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC--------CEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE--------EEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 89999999999999999999999999999998763 678999999999999999997 789999999999999
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEE
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l 348 (1149)
.+++....+. +|. ..+.++++.+++..+++++ |++|++||+++|+++.+|
T Consensus 180 ~~~~~~~~~~-------------------~h~----------~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~ 230 (410)
T 1vyh_C 180 QGFECIRTMH-------------------GHD----------HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 230 (410)
T ss_dssp TSSCEEECCC-------------------CCS----------SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCceeEEEc-------------------CCC----------CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 8765443332 222 5677888888888888765 688999999999999999
Q ss_pred ecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec------ccccCCCCce
Q 001123 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDDNRRT 422 (1149)
Q Consensus 349 ~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~------g~~~~~~~~V 422 (1149)
.+|...+..+ .+.+++..+++|+.|+..++|+. ..+.+|...|
T Consensus 231 ~~h~~~v~~~-------------------------------~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v 279 (410)
T 1vyh_C 231 TGHREWVRMV-------------------------------RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 279 (410)
T ss_dssp ECCSSCEEEE-------------------------------EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred eCCCccEEEE-------------------------------EECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceE
Confidence 8776554333 34445556677777777777752 2467888899
Q ss_pred EEEEEcCC--------------------C-cEEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecC
Q 001123 423 EALTTSID--------------------G-MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMN 478 (1149)
Q Consensus 423 ~ava~s~D--------------------g-~laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~D 478 (1149)
.+++++|+ | .+++|+.|++|++||+ +|+++.++.+|...|.++++ +|++|++|+.|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D 359 (410)
T 1vyh_C 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD 359 (410)
T ss_dssp EEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETT
T ss_pred EEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCC
Confidence 99999885 3 4899999999999999 79999999999999999976 68999999999
Q ss_pred cEEEEEeCC-CceeeeeeccCCCeEEEE--ecCCeEEeecCCCceeeeec
Q 001123 479 GIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 479 GtIrlWD~~-G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl 525 (1149)
|+|++||+. ++++..+.+|.+.|++++ +++.+|+|||.|++||+|++
T Consensus 360 ~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 360 KTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp TEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999976 788999999999999998 58889999999999999985
No 7
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.6e-35 Score=359.75 Aligned_cols=364 Identities=15% Similarity=0.153 Sum_probs=255.6
Q ss_pred cceeEEEEEeeCC---eEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCCE
Q 001123 131 IGCFLRTIVCTEE---QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGV 205 (1149)
Q Consensus 131 ~~~~l~~l~~~~~---~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~~ 205 (1149)
+...+..++.+.. .+.+ +.|++||+||..++..... +.| .+.|.+++|+|+|++
T Consensus 146 h~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~---------------------l~~H~~~V~~v~fspdg~~ 204 (611)
T 1nr0_A 146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST---------------------FGEHTKFVHSVRYNPDGSL 204 (611)
T ss_dssp CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEE---------------------ECCCSSCEEEEEECTTSSE
T ss_pred CCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeee---------------------eccccCceEEEEECCCCCE
Confidence 3345667777632 3554 5699999999876554322 223 789999999999999
Q ss_pred EEEEeCCCeEEEEECCCCCCCCCCCccceEEee-------cCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeee
Q 001123 206 VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-------AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALS 277 (1149)
Q Consensus 206 LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~-------GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~ 277 (1149)
||||+.|++||+||+.++.+ ...+. +|.++|++|+|+|+|+ |+|||.|++|||||+.+++....
T Consensus 205 las~s~D~~i~lwd~~~g~~--------~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~ 276 (611)
T 1nr0_A 205 FASTGGDGTIVLYNGVDGTK--------TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKT 276 (611)
T ss_dssp EEEEETTSCEEEEETTTCCE--------EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred EEEEECCCcEEEEECCCCcE--------eeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeee
Confidence 99999999999999987652 44553 8999999999999998 89999999999999988765443
Q ss_pred cCCCcc-------------eeeEEEeeec--cccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCC
Q 001123 278 LKPEER-------------HTAALIVERS--YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDART 341 (1149)
Q Consensus 278 l~~~~~-------------~~~a~~~~~~--~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~T 341 (1149)
+..... .+.+...+.. .++..... .......+...+.++++++++..+++++ |++|++||+.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~-~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~ 355 (611)
T 1nr0_A 277 IPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGS-IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST 355 (611)
T ss_dssp EECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCC-cceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Confidence 321110 0111100000 00000000 0000112346789999999999998876 68899999999
Q ss_pred ccEEEEE-ecCCceeeEEeeccCCCccc-cccceeeEEecC---------------------------------------
Q 001123 342 RELLKVF-NIDGQIENRVDMSLLPDFAM-EDEFKTKIVTSS--------------------------------------- 380 (1149)
Q Consensus 342 G~~L~~l-~~~g~~~~~v~~S~~~~~~~-~~~~~~~~~s~~--------------------------------------- 380 (1149)
+++...+ .+|...+..+.+++...... ..+-.+++|...
T Consensus 356 ~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~ 435 (611)
T 1nr0_A 356 GISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA 435 (611)
T ss_dssp CCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEE
T ss_pred CceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEE
Confidence 9987766 44555555666654322110 011111122110
Q ss_pred ----------CCCccceeeeeeccccceEeecCCcEEEEeecc--c-----ccCCCCceEEEEEcCCCc-EEEEeCCCeE
Q 001123 381 ----------KKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG--G-----FGDDNRRTEALTTSIDGM-IWTGGANGLL 442 (1149)
Q Consensus 381 ----------~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g--~-----~~~~~~~V~ava~s~Dg~-laSgs~DgtI 442 (1149)
.+...+.++.|+|++..+++|+.|+..++|+.. . ..+|...|.+++|+|||+ |++++.|++|
T Consensus 436 ~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v 515 (611)
T 1nr0_A 436 IYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKV 515 (611)
T ss_dssp EEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCE
Confidence 011224567888999999999999988887621 1 146788899999999987 7899999999
Q ss_pred EEEeC-C-CCeeEe--eecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-Cc-ee-eeeecc-CCCeEEEE--ecCCe
Q 001123 443 LQWDP-N-GNRLQD--FQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GN-LL-GGWVAH-SSPVIKMA--VGAGY 510 (1149)
Q Consensus 443 rlWD~-t-G~~l~t--l~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~-~l-~~l~gH-~~~V~sLa--~Dg~~ 510 (1149)
++||+ + ++++.+ +.+|...|+++++ ||++||+|+.|++|+|||++ +. ++ ..+.+| .+.|.+++ +|++
T Consensus 516 ~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~- 594 (611)
T 1nr0_A 516 IPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT- 594 (611)
T ss_dssp EEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-
T ss_pred EEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-
Confidence 99999 5 666654 3459999998876 78999999999999999986 33 44 678899 89999988 4777
Q ss_pred EEeecCCCceeeeec
Q 001123 511 IFTLANHGGIRGWNV 525 (1149)
Q Consensus 511 LaSgS~DgtIRlWdl 525 (1149)
|+|+|.|++||+|++
T Consensus 595 l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 595 IVSAGQDSNIKFWNV 609 (611)
T ss_dssp EEEEETTSCEEEEEC
T ss_pred EEEecCCCCEEEEec
Confidence 999999999999986
No 8
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.6e-34 Score=348.92 Aligned_cols=329 Identities=18% Similarity=0.237 Sum_probs=267.1
Q ss_pred eEEEEEee--CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCCEEEEE
Q 001123 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSG 209 (1149)
Q Consensus 134 ~l~~l~~~--~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~~LaSG 209 (1149)
.++.++.. ...+.+ +.|++|++||.. +.... .+.| ..+|.+++|+|++++|++|
T Consensus 223 ~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~---------------------~~~~~~~~v~~v~~~~d~~~l~~~ 280 (577)
T 2ymu_A 223 SVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQ---------------------TLTGHSSSVNGVAFRPDGQTIASA 280 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEE---------------------EECCCSSCEEEEEECTTSSEEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEE---------------------EEecCCCCEEEEEEcCCCCEEEEE
Confidence 44555554 344554 569999999964 33221 1223 7899999999999999999
Q ss_pred eCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEE
Q 001123 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (1149)
Q Consensus 210 S~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~ 288 (1149)
+.|++|++|+..+ .....+.||.+.|++++|+|+++ |++++.|++||+||+.+.. ...+.
T Consensus 281 ~~d~~i~~w~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-~~~~~--------- 341 (577)
T 2ymu_A 281 SDDKTVKLWNRNG---------QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-LQTLT--------- 341 (577)
T ss_dssp ETTSCEEEEETTS---------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-EEEEC---------
T ss_pred eCCCEEEEEeCCC---------cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-eEEEe---------
Confidence 9999999999765 23677899999999999999997 7899999999999985432 11111
Q ss_pred EeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCcc
Q 001123 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (1149)
Q Consensus 289 ~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~ 367 (1149)
+| ...+.++++++++..+++++ +++|++||. +++++..+.+|...+..+.+++.+...
T Consensus 342 ----------~~----------~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l 400 (577)
T 2ymu_A 342 ----------GH----------SSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTI 400 (577)
T ss_dssp ----------CC----------SSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred ----------CC----------CCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEE
Confidence 12 25677888899988888765 578999994 688999999888888889999876654
Q ss_pred cc--ccceeeEEecC--------CCCccceeeeeeccccceEeecCCcEEEEeec-----ccccCCCCceEEEEEcCCCc
Q 001123 368 ME--DEFKTKIVTSS--------KKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK-----GGFGDDNRRTEALTTSIDGM 432 (1149)
Q Consensus 368 ~~--~~~~~~~~s~~--------~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~-----g~~~~~~~~V~ava~s~Dg~ 432 (1149)
+. .+..+++|... .+...+..+.|.+++..++++..|+..++|+. ..+.+|...|.+++++||+.
T Consensus 401 ~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~ 480 (577)
T 2ymu_A 401 ASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQ 480 (577)
T ss_dssp EEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSC
T ss_pred EEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCC
Confidence 42 22233444321 23455667899999999999999998888862 35678889999999999987
Q ss_pred -EEEEeCCCeEEEEeCCCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCCCceeeeeeccCCCeEEEE--ec
Q 001123 433 -IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMA--VG 507 (1149)
Q Consensus 433 -laSgs~DgtIrlWD~tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~G~~l~~l~gH~~~V~sLa--~D 507 (1149)
|++++.|++|++||.+|++++++.+|...|+++++ +|++||+|+.||+|+|||.+|+++..+.||.+.|++|+ +|
T Consensus 481 ~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~d 560 (577)
T 2ymu_A 481 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD 560 (577)
T ss_dssp EEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTT
T ss_pred EEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCC
Confidence 78999999999999999999999999999999976 79999999999999999999999999999999999998 59
Q ss_pred CCeEEeecCCCceeeee
Q 001123 508 AGYIFTLANHGGIRGWN 524 (1149)
Q Consensus 508 g~~LaSgS~DgtIRlWd 524 (1149)
|++|+|+|.|++|++||
T Consensus 561 g~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 561 GQTIASASSDKTVKLWN 577 (577)
T ss_dssp SSCEEEEETTSCEEEEC
T ss_pred CCEEEEEeCCCEEEEeC
Confidence 99999999999999997
No 9
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.5e-34 Score=355.87 Aligned_cols=357 Identities=12% Similarity=0.086 Sum_probs=236.5
Q ss_pred CCeEEEeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001123 142 EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (1149)
Q Consensus 142 ~~~l~ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~ 221 (1149)
++.|.++.+++|+|||++++..... + ..| ...|.|++|+|+|++||||+.||+||+||+.
T Consensus 30 g~~l~~~~~~~v~l~~~~~~~~~~~-----------------~--~~h-~~~v~~~~~spdg~~lasg~~d~~v~lWd~~ 89 (611)
T 1nr0_A 30 GDKIQYCNGTSVYTVPVGSLTDTEI-----------------Y--TEH-SHQTTVAKTSPSGYYCASGDVHGNVRIWDTT 89 (611)
T ss_dssp SSEEEEEETTEEEEEETTCSSCCEE-----------------E--CCC-SSCEEEEEECTTSSEEEEEETTSEEEEEESS
T ss_pred CCEEEeCCCCEEEEecCCCcccCeE-----------------e--cCC-CCceEEEEECCCCcEEEEEeCCCCEEEeECC
Confidence 5566667788999999986654432 1 124 7899999999999999999999999999997
Q ss_pred CCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECC----CcEEEEeCCCcceeeecCCCcceeeEEEeeecc--
Q 001123 222 ARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG----GGIKIWPWEAIEKALSLKPEERHTAALIVERSY-- 294 (1149)
Q Consensus 222 ~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~D----gTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~-- 294 (1149)
++.. .....+.+|.++|++|+|+|||+ |++++.| ++|++||... ....+..+...+.++...+..
T Consensus 90 ~~~~------~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~--~~~~l~gh~~~v~~v~f~p~~~~ 161 (611)
T 1nr0_A 90 QTTH------ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT--SNGNLTGQARAMNSVDFKPSRPF 161 (611)
T ss_dssp STTC------CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC--BCBCCCCCSSCEEEEEECSSSSC
T ss_pred CCcc------eeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC--CcceecCCCCCceEEEECCCCCe
Confidence 6442 22446778888888888888887 6666654 3677777432 222233332222222111100
Q ss_pred -------------ccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEe-------cCCc
Q 001123 295 -------------IDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN-------IDGQ 353 (1149)
Q Consensus 295 -------------~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~-------~~g~ 353 (1149)
++..... ......-+...|.++++++++..+++++ |++|+|||+.+|+++.++. +|..
T Consensus 162 ~l~s~s~D~~v~lwd~~~~~-~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~ 240 (611)
T 1nr0_A 162 RIISGSDDNTVAIFEGPPFK-FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG 240 (611)
T ss_dssp EEEEEETTSCEEEEETTTBE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSS
T ss_pred EEEEEeCCCeEEEEECCCCe-EeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCC
Confidence 1100000 0000111346689999999999988875 6899999999999999984 5777
Q ss_pred eeeEEeeccCCCcccc--ccceeeEEec----------------------------------------------------
Q 001123 354 IENRVDMSLLPDFAME--DEFKTKIVTS---------------------------------------------------- 379 (1149)
Q Consensus 354 ~~~~v~~S~~~~~~~~--~~~~~~~~s~---------------------------------------------------- 379 (1149)
.+..+.+++.+...+. .+-.+++|..
T Consensus 241 ~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~ 320 (611)
T 1nr0_A 241 SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVR 320 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEE
Confidence 7888899887654432 1222233321
Q ss_pred CCCCccceeeeeeccccceEeecCCcEEEEeecc------cc-cCCC---------------------------------
Q 001123 380 SKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG------GF-GDDN--------------------------------- 419 (1149)
Q Consensus 380 ~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g------~~-~~~~--------------------------------- 419 (1149)
.++...+.++.|.+++..+++++.|+..++|+.. .+ .+|.
T Consensus 321 ~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~ 400 (611)
T 1nr0_A 321 YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGV 400 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSS
T ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccc
Confidence 1234456678888888888998888877777521 01 1111
Q ss_pred ------------------------------------------------CceEEEEEcCCCc-EEEEeCCCeEEEEeCC-C
Q 001123 420 ------------------------------------------------RRTEALTTSIDGM-IWTGGANGLLLQWDPN-G 449 (1149)
Q Consensus 420 ------------------------------------------------~~V~ava~s~Dg~-laSgs~DgtIrlWD~t-G 449 (1149)
..+.+++++|||+ |++|+.|++|++||+. +
T Consensus 401 ~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~ 480 (611)
T 1nr0_A 401 DSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGA 480 (611)
T ss_dssp CTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETT
T ss_pred cccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCC
Confidence 2245677777776 6788888888888883 3
Q ss_pred Ce--eEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC--Cceeee--eeccCCCeEEEE--ecCCeEEeecCCCc
Q 001123 450 NR--LQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE--GNLLGG--WVAHSSPVIKMA--VGAGYIFTLANHGG 519 (1149)
Q Consensus 450 ~~--l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~--G~~l~~--l~gH~~~V~sLa--~Dg~~LaSgS~Dgt 519 (1149)
.. +.+ .+|...|+++++ +|++||+|+.|++|++||+. ++++.. +.+|.+.|++++ +||++|+|||.|++
T Consensus 481 ~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~ 559 (611)
T 1nr0_A 481 SVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS 559 (611)
T ss_dssp EEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCc
Confidence 22 334 567788887765 67888888888888888864 454443 445888888877 47788888888888
Q ss_pred eeeeeccCC
Q 001123 520 IRGWNVTSP 528 (1149)
Q Consensus 520 IRlWdl~sp 528 (1149)
||+|++..+
T Consensus 560 v~lW~~~~~ 568 (611)
T 1nr0_A 560 VIVWNMNKP 568 (611)
T ss_dssp EEEEETTCT
T ss_pred EEEEECCCc
Confidence 888887654
No 10
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=333.17 Aligned_cols=288 Identities=14% Similarity=0.051 Sum_probs=209.1
Q ss_pred ceeEEEEEee--CCeEEEeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEE
Q 001123 132 GCFLRTIVCT--EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (1149)
Q Consensus 132 ~~~l~~l~~~--~~~l~ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSG 209 (1149)
...+.+++.. +..|.+++|+++|+||......... . .+...........+ ..+|.+++|++++ .|++|
T Consensus 30 ~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~-----~---~~~~~~~~~~~~~~-~~~v~~~~~s~d~-~l~~~ 99 (344)
T 4gqb_B 30 ERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDP-----C---AAPNEGFCSAGVQT-EAGVADLTWVGER-GILVA 99 (344)
T ss_dssp CSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSG-----G---GTTCGGGCSEEEEE-SSCEEEEEEETTT-EEEEE
T ss_pred cCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccc-----c---ccCCcceeeeeecc-CCCEEEEEEeCCC-eEEEE
Confidence 3457777776 3444557799999998432110000 0 00000000111112 5789999999985 67899
Q ss_pred eCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEE
Q 001123 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (1149)
Q Consensus 210 S~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~ 288 (1149)
+.||+||+||++++.+ .......+.||.+.|++|+|+|+|+ |+|||.|++||+||+++++....+.
T Consensus 100 s~dg~v~lWd~~~~~~----~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~--------- 166 (344)
T 4gqb_B 100 SDSGAVELWELDENET----LIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYR--------- 166 (344)
T ss_dssp ETTSEEEEEEECTTSS----CEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC---------
T ss_pred ECCCEEEEEeccCCCc----eeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc---------
Confidence 9999999999998763 1111234679999999999999998 8999999999999998876544332
Q ss_pred EeeeccccccccccccceeeeecCCeEEEEEcCCCC-EEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCc
Q 001123 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (1149)
Q Consensus 289 ~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~-~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~ 366 (1149)
+|. ..|.++++++++. .+++++ |++|++||+++++++..+...
T Consensus 167 ----------~h~----------~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~--------------- 211 (344)
T 4gqb_B 167 ----------AHA----------AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS--------------- 211 (344)
T ss_dssp ----------CCS----------SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----------------
T ss_pred ----------CcC----------CceEEEEecCCCCCceeeeccccccccccccccceeeeeecc---------------
Confidence 222 5677788877764 566665 689999999998876654311
Q ss_pred cccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCC-Cc-EEEEeCCCeEEE
Q 001123 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID-GM-IWTGGANGLLLQ 444 (1149)
Q Consensus 367 ~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~D-g~-laSgs~DgtIrl 444 (1149)
.+...+.+++++|+ +. +++|+.||+|++
T Consensus 212 --------------------------------------------------~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~ 241 (344)
T 4gqb_B 212 --------------------------------------------------APGYLPTSLAWHPQQSEVFVFGDENGTVSL 241 (344)
T ss_dssp ----------------------------------------------------CCCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred --------------------------------------------------eeeccceeeeecCCCCcceEEeccCCcEEE
Confidence 11123456677774 44 689999999999
Q ss_pred EeC-CCCeeEeeecCCccEEEEEe--cC-CEEEEeecCcEEEEEeCCCceeeeeeccCCCeEEEEe--cCC-eEEeecCC
Q 001123 445 WDP-NGNRLQDFQYLPFAVQCLCT--FG-SQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAV--GAG-YIFTLANH 517 (1149)
Q Consensus 445 WD~-tG~~l~tl~gH~~~V~sls~--dG-~~LaSGs~DGtIrlWD~~G~~l~~l~gH~~~V~sLa~--Dg~-~LaSgS~D 517 (1149)
||+ ++++++++.+|...|+++++ +| ++||+|+.||+|+|||++...+..+.+|.+.|++|++ +++ +|+|+|.|
T Consensus 242 wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D 321 (344)
T 4gqb_B 242 VDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWD 321 (344)
T ss_dssp EESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETT
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCC
Confidence 999 79999999999999999986 56 6899999999999999875455678999999999984 665 57799999
Q ss_pred CceeeeeccC
Q 001123 518 GGIRGWNVTS 527 (1149)
Q Consensus 518 gtIRlWdl~s 527 (1149)
++|++|++.+
T Consensus 322 ~~v~~w~v~~ 331 (344)
T 4gqb_B 322 HQVVHHVVPT 331 (344)
T ss_dssp SCEEEEECCC
T ss_pred CeEEEEECCC
Confidence 9999999864
No 11
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.4e-34 Score=329.43 Aligned_cols=286 Identities=15% Similarity=0.110 Sum_probs=211.8
Q ss_pred CCceEEEEEcCCCCEEEEEeC------CCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcE
Q 001123 191 VSSVMCMVGDEASGVVWSGHR------DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGI 264 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~------DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTI 264 (1149)
...|.|++|||||++|||||. |++|++|+..++. ..........+|.+.|++|+|+|++++++||.||+|
T Consensus 42 ~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~----~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v 117 (357)
T 4g56_B 42 EVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGA----PNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAV 117 (357)
T ss_dssp CSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC-------CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCE
T ss_pred cCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCC----cceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEE
Confidence 678999999999999999998 7889999987754 112234456789999999999999999999999999
Q ss_pred EEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCcc
Q 001123 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE 343 (1149)
Q Consensus 265 RVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~ 343 (1149)
||||+.+++....... ...+| ...|.++++++++..+++++ +++|++||+++++
T Consensus 118 ~lWd~~~~~~~~~~~~---------------~~~~h----------~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~ 172 (357)
T 4g56_B 118 ELWEILEKESLLVNKF---------------AKYEH----------DDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA 172 (357)
T ss_dssp EEC--------CCCCE---------------EECCC----------SSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE
T ss_pred EEeeccccceeEEEee---------------ccCCC----------CCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Confidence 9999987653221100 01112 25688999999999888876 6789999999999
Q ss_pred EEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecc--------cc
Q 001123 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG--------GF 415 (1149)
Q Consensus 344 ~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g--------~~ 415 (1149)
++..|.+|...+..+.+++..+ ..++++..|+..++|+.. .+
T Consensus 173 ~~~~~~~h~~~v~~v~~s~~~~------------------------------~~~~s~~~dg~v~~wd~~~~~~~~~~~~ 222 (357)
T 4g56_B 173 VLKSYNAHSSEVNCVAACPGKD------------------------------TIFLSCGEDGRILLWDTRKPKPATRIDF 222 (357)
T ss_dssp EEEEECCCSSCEEEEEECTTCS------------------------------SCEEEEETTSCEEECCTTSSSCBCBCCC
T ss_pred EEEEEcCCCCCEEEEEEccCCC------------------------------ceeeeeccCCceEEEECCCCceeeeeee
Confidence 9999987776655555544322 134556666666666521 23
Q ss_pred cCCCCceEEEEEcCCC-c-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cC-CEEEEeecCcEEEEEeCC-C
Q 001123 416 GDDNRRTEALTTSIDG-M-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FG-SQIWVGYMNGIVQVLDLE-G 488 (1149)
Q Consensus 416 ~~~~~~V~ava~s~Dg-~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG-~~LaSGs~DGtIrlWD~~-G 488 (1149)
..+...+.+++++|++ . +++|+.|++|++||+ ++++++++.+|...|+++++ +| ++||+|+.||+|+|||++ +
T Consensus 223 ~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~ 302 (357)
T 4g56_B 223 CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS 302 (357)
T ss_dssp TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred ccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence 3455678899999874 4 789999999999999 78999999999999999976 55 689999999999999987 5
Q ss_pred ceeeeeeccCCCeEEEE--e-cCCeEEeecCCCceeeeeccCCCCCchhhh
Q 001123 489 NLLGGWVAHSSPVIKMA--V-GAGYIFTLANHGGIRGWNVTSPGPLDSILC 536 (1149)
Q Consensus 489 ~~l~~l~gH~~~V~sLa--~-Dg~~LaSgS~DgtIRlWdl~sp~pld~~i~ 536 (1149)
+++. ..+|.+.|++|+ | |+++|+|+|.|++|++|++.+++....++.
T Consensus 303 ~~~~-~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~~~i~ 352 (357)
T 4g56_B 303 EVFR-DLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTENLIA 352 (357)
T ss_dssp EEEE-ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----------
T ss_pred cEeE-ECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccccccC
Confidence 6555 459999999998 3 789999999999999999988776665544
No 12
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.3e-34 Score=323.84 Aligned_cols=269 Identities=16% Similarity=0.142 Sum_probs=222.6
Q ss_pred CCceEEEEEcCC----CCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEE
Q 001123 191 VSSVMCMVGDEA----SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (1149)
Q Consensus 191 ~~~V~~lafs~d----g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIR 265 (1149)
.++|.|++|+++ +.+|+|||.|++||+|++..+.+ .....+.||..+|++++|++++. ++|||.|++||
T Consensus 32 ~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~------~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~ 105 (321)
T 3ow8_A 32 DDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL------DLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105 (321)
T ss_dssp SSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE------EEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred CCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe------eeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 789999999874 67999999999999999976542 23456899999999999999987 78999999999
Q ss_pred EEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccE
Q 001123 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL 344 (1149)
Q Consensus 266 VWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~ 344 (1149)
+||+.+++....+.. + ...+..+++++++..+++++ +++|++||+.+++.
T Consensus 106 lWd~~~~~~~~~~~~-------------------~----------~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~ 156 (321)
T 3ow8_A 106 LWDLENGKQIKSIDA-------------------G----------PVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 156 (321)
T ss_dssp EEETTTTEEEEEEEC-------------------C----------TTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE
T ss_pred EEECCCCCEEEEEeC-------------------C----------CccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce
Confidence 999988764433211 1 13345677888888888776 57899999999998
Q ss_pred EEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec------ccccCC
Q 001123 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDD 418 (1149)
Q Consensus 345 L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~------g~~~~~ 418 (1149)
...+..++..+ .++.|.+++..+++|+.|+..++|+. ..+.+|
T Consensus 157 ~~~~~~~~~~v-------------------------------~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h 205 (321)
T 3ow8_A 157 EYSLDTRGKFI-------------------------------LSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH 205 (321)
T ss_dssp EEEEECSSSCE-------------------------------EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred eEEecCCCceE-------------------------------EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccc
Confidence 87776655443 23456666667778888887777762 246788
Q ss_pred CCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-Cceeee
Q 001123 419 NRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGG 493 (1149)
Q Consensus 419 ~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~ 493 (1149)
...|.+++++|++. |++|+.|++|++||+ +++++.++.+|...|.++++ +|++|++|+.||+|+|||+. ++++.+
T Consensus 206 ~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~ 285 (321)
T 3ow8_A 206 AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHT 285 (321)
T ss_dssp SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEE
Confidence 88999999999987 789999999999999 78999999999999999976 69999999999999999986 889999
Q ss_pred eeccCCCeEEEE--ecCCeEEeecCCCceeeeec
Q 001123 494 WVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 494 l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl 525 (1149)
+.+|.+.|++++ +++++|+|++.|++|++||.
T Consensus 286 ~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 286 FFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 999999999998 48899999999999999995
No 13
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=5.8e-33 Score=335.27 Aligned_cols=362 Identities=16% Similarity=0.183 Sum_probs=274.4
Q ss_pred cceeEEEEEee--CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCCEE
Q 001123 131 IGCFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVV 206 (1149)
Q Consensus 131 ~~~~l~~l~~~--~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~~L 206 (1149)
+...++.|+.+ ++.|.+ +.|++|||||. ++..... +.| .++|.||+|+|||++|
T Consensus 15 H~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~---------------------l~gh~~~V~~l~fspdg~~l 72 (577)
T 2ymu_A 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT---------------------LTGHSSSVWGVAFSPDGQTI 72 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEE---------------------EECCSSCEEEEEECTTSSEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEE---------------------EeCCCCCEEEEEECCCCCEE
Confidence 34467777776 344544 46889999995 4544332 334 8899999999999999
Q ss_pred EEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCccee
Q 001123 207 WSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (1149)
Q Consensus 207 aSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~ 285 (1149)
|||+.|++|++||+.+ +.+.++.+|.++|++|+|+|+|+ |++++.|+++++|+...... .....+...+
T Consensus 73 as~~~d~~i~vWd~~~---------~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~-~~~~~~~~~v 142 (577)
T 2ymu_A 73 ASASDDKTVKLWNRNG---------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL-QTLTGHSSSV 142 (577)
T ss_dssp EEEETTSCEEEEETTS---------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEE-EEECCCSSCE
T ss_pred EEEeCCCEEEEEECCC---------CEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeeccccccee-eeccCCCCce
Confidence 9999999999999754 24778999999999999999998 89999999999999865322 1111111111
Q ss_pred eEEEeeeccc-----------cccccc-cccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCC
Q 001123 286 AALIVERSYI-----------DLRSHL-SVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDG 352 (1149)
Q Consensus 286 ~a~~~~~~~~-----------~l~~~~-~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g 352 (1149)
..+....... .+.... ............+..+++.+++..+++++ +++|++||. +++++..+.++.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~ 221 (577)
T 2ymu_A 143 WGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS 221 (577)
T ss_dssp EEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCS
T ss_pred eeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCC
Confidence 1111100000 000000 00000112345678888999888888765 678999995 688999999888
Q ss_pred ceeeEEeeccCCCcccc--ccceeeEEec--------CCCCccceeeeeeccccceEeecCCcEEEEeec-----ccccC
Q 001123 353 QIENRVDMSLLPDFAME--DEFKTKIVTS--------SKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK-----GGFGD 417 (1149)
Q Consensus 353 ~~~~~v~~S~~~~~~~~--~~~~~~~~s~--------~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~-----g~~~~ 417 (1149)
..+..+.+++.....+. .+..+++|.. ..+...+..+.|.+++..++++..++..++|+. ..+.+
T Consensus 222 ~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~ 301 (577)
T 2ymu_A 222 SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTG 301 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECC
T ss_pred CCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEec
Confidence 88888888887655432 2223334432 234456678889999999999999998888762 24678
Q ss_pred CCCceEEEEEcCCCc-EEEEeCCCeEEEEeCCCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCCCceeeee
Q 001123 418 DNRRTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGW 494 (1149)
Q Consensus 418 ~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~G~~l~~l 494 (1149)
|...|.+++++|++. +++++.|++|++||.++..+..+.+|...|.++++ +|++|++|+.||+|++||.+++++..+
T Consensus 302 h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~ 381 (577)
T 2ymu_A 302 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL 381 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEe
Confidence 899999999999986 78999999999999999999999999999999876 699999999999999999999999999
Q ss_pred eccCCCeEEEE--ecCCeEEeecCCCceeeeec
Q 001123 495 VAHSSPVIKMA--VGAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 495 ~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl 525 (1149)
.+|...|.+++ +|+++|++++.|++|++||.
T Consensus 382 ~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~ 414 (577)
T 2ymu_A 382 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 414 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 99999999998 58999999999999999995
No 14
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=9.2e-34 Score=329.30 Aligned_cols=297 Identities=18% Similarity=0.191 Sum_probs=221.0
Q ss_pred cceeEEEEEee--CCeEEEeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEE
Q 001123 131 IGCFLRTIVCT--EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (1149)
Q Consensus 131 ~~~~l~~l~~~--~~~l~ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaS 208 (1149)
+...+..++.. +..|.+|.|++++||++.++.....+. +......+...........+...|.+++|+|+|++|+|
T Consensus 63 h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLS--DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEEC--C-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEec--CccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 33445555554 555666889999999999887543310 00000000000000000001346999999999999999
Q ss_pred EeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeE
Q 001123 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (1149)
Q Consensus 209 GS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a 287 (1149)
|+.||+|++||+.++. ....+.||.+.|++++|+|+|+ |+|||.|++||+||+.+++....+.
T Consensus 141 ~~~d~~i~iwd~~~~~--------~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-------- 204 (393)
T 1erj_A 141 GAEDRLIRIWDIENRK--------IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-------- 204 (393)
T ss_dssp EETTSCEEEEETTTTE--------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--------
T ss_pred EcCCCeEEEEECCCCc--------EEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE--------
Confidence 9999999999998764 3677899999999999999997 8999999999999998765433221
Q ss_pred EEeeeccccccccccccceeeeecCCeEEEEEcC-CCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCC
Q 001123 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (1149)
Q Consensus 288 ~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~-~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~ 365 (1149)
....+..+++.+ ++..+++++ |++|++||+++++++..+.....
T Consensus 205 ----------------------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~------------ 250 (393)
T 1erj_A 205 ----------------------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE------------ 250 (393)
T ss_dssp ----------------------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC----------------
T ss_pred ----------------------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccccc------------
Confidence 013455666766 666777665 68899999999887765531100
Q ss_pred ccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEeCCCeEEE
Q 001123 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQ 444 (1149)
Q Consensus 366 ~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrl 444 (1149)
...+|...|.+++++|+|. |++|+.|++|++
T Consensus 251 ------------------------------------------------~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~ 282 (393)
T 1erj_A 251 ------------------------------------------------SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 282 (393)
T ss_dssp --------------------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ------------------------------------------------CCCCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 0235667788899999987 889999999999
Q ss_pred EeC-C------------CCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEEEEe--
Q 001123 445 WDP-N------------GNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV-- 506 (1149)
Q Consensus 445 WD~-t------------G~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa~-- 506 (1149)
||+ + +.+..++.+|...|.++++ +|++|++|+.||+|++||+. |+++..+.+|.+.|.++++
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~ 362 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 362 (393)
T ss_dssp EEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred EECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecC
Confidence 998 3 3567888999999999976 68999999999999999976 8899999999999999984
Q ss_pred ------cCCeEEeecCCCceeeeeccC
Q 001123 507 ------GAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 507 ------Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
++++|+|||.|++||+|++..
T Consensus 363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 363 GSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CcCcCCCCCEEEEECCCCcEEECcccc
Confidence 468999999999999999864
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.7e-33 Score=317.47 Aligned_cols=273 Identities=18% Similarity=0.210 Sum_probs=219.9
Q ss_pred eec-CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEE
Q 001123 188 VKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (1149)
Q Consensus 188 ~~G-~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIR 265 (1149)
+.| .++|.+++|+|++++|+||+.||+|++||+.++. ....+.+|.+.|.+++|+|+|+ |++|+.|++|+
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~--------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~ 122 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN--------KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC--------EEEEEECSSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC--------cceEeecCCccEEEEEECCCCCEEEEEeCCCeEE
Confidence 334 8899999999999999999999999999998765 3677899999999999999998 78999999999
Q ss_pred EEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEE
Q 001123 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELL 345 (1149)
Q Consensus 266 VWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L 345 (1149)
+|++.+.+..... .. .+.+| .+.+.++.+.+++..+.++.|++|++||+.+++++
T Consensus 123 iw~~~~~~~~~~~------~~---------~~~~h----------~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~ 177 (340)
T 1got_B 123 IYNLKTREGNVRV------SR---------ELAGH----------TGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQT 177 (340)
T ss_dssp EEETTTCSBSCEE------EE---------EEECC----------SSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEE
T ss_pred EEECccCCCccee------EE---------EecCC----------CccEEEEEECCCCcEEEEECCCcEEEEECCCCcEE
Confidence 9999764321100 00 01122 24566777766665555566889999999999999
Q ss_pred EEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec------ccccCCC
Q 001123 346 KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDDN 419 (1149)
Q Consensus 346 ~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~------g~~~~~~ 419 (1149)
.++.+|...+.. +.|.+++..+++|+.|+..++|+. ..+.+|.
T Consensus 178 ~~~~~h~~~v~~-------------------------------~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~ 226 (340)
T 1got_B 178 TTFTGHTGDVMS-------------------------------LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226 (340)
T ss_dssp EEECCCSSCEEE-------------------------------EEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS
T ss_pred EEEcCCCCceEE-------------------------------EEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCc
Confidence 888766554333 345555556677777887777762 2467888
Q ss_pred CceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeec--CCccEEEEEe--cCCEEEEeecCcEEEEEeCC-Cceee
Q 001123 420 RRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQY--LPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLG 492 (1149)
Q Consensus 420 ~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~g--H~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~ 492 (1149)
..|.+++++|++. +++|+.||+|++||+ +++++..+.. +...|.++++ +|++|++|+.||+|++||+. ++++.
T Consensus 227 ~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~ 306 (340)
T 1got_B 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEee
Confidence 9999999999987 889999999999999 6777777653 3347888875 69999999999999999975 88899
Q ss_pred eeeccCCCeEEEE--ecCCeEEeecCCCceeeee
Q 001123 493 GWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWN 524 (1149)
Q Consensus 493 ~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWd 524 (1149)
.+.+|.+.|.+++ +||++|+|||.|++||+||
T Consensus 307 ~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999998 5899999999999999997
No 16
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.9e-32 Score=303.42 Aligned_cols=269 Identities=16% Similarity=0.153 Sum_probs=215.2
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
.+.|.+++|+|++++|+||+.||+|++||+.++. ++..+.+|..+|.+++|+|+++ |+|||.|++||+||+
T Consensus 13 ~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV--------EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (304)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE--------EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc--------eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 8899999999999999999999999999998864 4778899999999999999997 899999999999999
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCc-cEEEE
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR-ELLKV 347 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG-~~L~~ 347 (1149)
.+++....+. +|. ..+.++++++++..+++++ |++|++||++++ .+...
T Consensus 85 ~~~~~~~~~~-------------------~h~----------~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~ 135 (304)
T 2ynn_A 85 NTGEKVVDFE-------------------AHP----------DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT 135 (304)
T ss_dssp TTCCEEEEEE-------------------CCS----------SCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEE
T ss_pred CCCcEEEEEe-------------------CCC----------CcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhh
Confidence 8876544332 222 5678888999888888876 678999999988 45566
Q ss_pred EecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeeccc-------ccCCCC
Q 001123 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG-------FGDDNR 420 (1149)
Q Consensus 348 l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~-------~~~~~~ 420 (1149)
+.+|...+.++.+++. ++..+++|+.|+..++|+... ..++..
T Consensus 136 ~~~h~~~v~~v~~~p~------------------------------~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~ 185 (304)
T 2ynn_A 136 FEGHEHFVMCVAFNPK------------------------------DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185 (304)
T ss_dssp ECCCCSCEEEEEECTT------------------------------CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTT
T ss_pred hcccCCcEEEEEECCC------------------------------CCCEEEEEeCCCeEEEEECCCCCccceeccCCcC
Confidence 7666655444444331 234566777777777776321 124456
Q ss_pred ceEEEEEcC--CC-cEEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-Cceeee
Q 001123 421 RTEALTTSI--DG-MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGG 493 (1149)
Q Consensus 421 ~V~ava~s~--Dg-~laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~ 493 (1149)
.+..+.+++ ++ .+++|+.|++|++||+ +++++.++.+|...|.++++ ++++|++|+.||+|++||.+ ++++..
T Consensus 186 ~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~ 265 (304)
T 2ynn_A 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT 265 (304)
T ss_dssp CEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred cEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeee
Confidence 778888765 55 4899999999999999 78999999999999998876 68999999999999999976 889999
Q ss_pred eeccCCCeEEEE--ecCC--eEEeecCCCceeeeeccC
Q 001123 494 WVAHSSPVIKMA--VGAG--YIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 494 l~gH~~~V~sLa--~Dg~--~LaSgS~DgtIRlWdl~s 527 (1149)
+.+|.+.|++++ +++. ++++|+ |+.+.+|++..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~asg~-~~g~~~~~~~~ 302 (304)
T 2ynn_A 266 LNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGN 302 (304)
T ss_dssp ECCSSSSEEEEEECTTCGGGCEEEEE-TTEEEEEECC-
T ss_pred ccCCCccEEEEEECCCCCceEEEEec-CCceEEEEecc
Confidence 999999999998 4543 467665 55577888753
No 17
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.8e-33 Score=320.52 Aligned_cols=284 Identities=17% Similarity=0.219 Sum_probs=215.4
Q ss_pred eec-CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEE
Q 001123 188 VKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (1149)
Q Consensus 188 ~~G-~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIR 265 (1149)
+.| .++|.|++|+|++++|+||+.||+||+||+.++. ....+.+|...|.+++|+|+|+ |+|||.|++|+
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~--------~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~ 133 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ--------KTHAIKLHCPWVMECAFAPNGQSVACGGLDSACS 133 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE--------EEEEEECCCTTCCCCEECTTSSEEEECCSSSCCE
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--------cceEEecCCCCEEEEEECCCCCEEEEeeCCCcEE
Confidence 344 8899999999999999999999999999998765 3678899999999999999998 89999999999
Q ss_pred EEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCC-CCEEEEec-CCceEEEEcCCcc
Q 001123 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALWDARTRE 343 (1149)
Q Consensus 266 VWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~-~~~v~Sas-d~tIrLWD~~TG~ 343 (1149)
+|++.+......... . ...+.+|. +.+..+.+.++ +.++++++ |++|++||+.+|+
T Consensus 134 iw~~~~~~~~~~~~~---~---------~~~~~gh~----------~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~ 191 (380)
T 3iz6_a 134 IFNLSSQADRDGNMP---V---------SRVLTGHK----------GYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ 191 (380)
T ss_dssp EEECCCCSSCCCSST---T---------CCBCCCCS----------SCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC
T ss_pred EEECCCCccccCCcc---c---------eeeccCCC----------cceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc
Confidence 999965321000000 0 00111222 23333344443 34566654 7899999999999
Q ss_pred EEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeec-cccceEeecCCcEEEEeecc-------cc
Q 001123 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQ-RSRNAIMGAADAVRRVAAKG-------GF 415 (1149)
Q Consensus 344 ~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~-~~~~~i~G~~d~v~rv~~~g-------~~ 415 (1149)
++..+..... .++...+.++.+.+ ++..+++|+.|+..++|+.. .+
T Consensus 192 ~~~~~~~~~~--------------------------~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~ 245 (380)
T 3iz6_a 192 RISIFGSEFP--------------------------SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY 245 (380)
T ss_dssp EEEEECCCSS--------------------------SSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE
T ss_pred EEEEeecccC--------------------------CCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE
Confidence 9887732110 01112223334433 34567888889988888632 46
Q ss_pred cCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCc-------cEEEEEe--cCCEEEEeecCcEEEEE
Q 001123 416 GDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPF-------AVQCLCT--FGSQIWVGYMNGIVQVL 484 (1149)
Q Consensus 416 ~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~-------~V~sls~--dG~~LaSGs~DGtIrlW 484 (1149)
.+|...|.+++++|+|. +++|+.||+|++||+ +|++++.+..|.. .|.++++ +|++|++|+.||+|++|
T Consensus 246 ~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vw 325 (380)
T 3iz6_a 246 HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVW 325 (380)
T ss_dssp CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEE
T ss_pred CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEE
Confidence 78899999999999986 889999999999999 7899988876543 3677765 79999999999999999
Q ss_pred eCC-Cceeeee----eccCCCeEEEE--ecCCeEEeecCCCceeeeeccC
Q 001123 485 DLE-GNLLGGW----VAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 485 D~~-G~~l~~l----~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
|+. ++.+..+ .+|.+.|.+++ +||++|+|||.|++|++|++..
T Consensus 326 d~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 326 DTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp ETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred ECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 975 7776666 78999999998 5999999999999999999864
No 18
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6e-32 Score=310.11 Aligned_cols=277 Identities=16% Similarity=0.196 Sum_probs=220.5
Q ss_pred eec-CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEE
Q 001123 188 VKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (1149)
Q Consensus 188 ~~G-~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIR 265 (1149)
+.| .++|.|++|+|++++|+|||.||+|++||..++. ....+..|...|.+++|+|+|. |++|+.|++|+
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~--------~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~ 131 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN--------KEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCS 131 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--------EEEEEECSSSCCCEEEECTTSSEEEEESTTSEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCC--------cceEEecCCCCEEEEEECCCCCEEEEeeCCCCEE
Confidence 334 8899999999999999999999999999988764 3567889999999999999998 79999999999
Q ss_pred EEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccE
Q 001123 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL 344 (1149)
Q Consensus 266 VWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~ 344 (1149)
+|++......... .... .+.+ +...+.++++.+++..+++++ |++|++||+.++++
T Consensus 132 v~~~~~~~~~~~~----~~~~---------~~~~----------h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~ 188 (354)
T 2pbi_B 132 VYPLTFDKNENMA----AKKK---------SVAM----------HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL 188 (354)
T ss_dssp EEECCCCTTCCSG----GGCE---------EEEE----------CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEecccccccc----ccce---------eeec----------cCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE
Confidence 9998643210000 0000 0111 235678888888888777765 68999999999999
Q ss_pred EEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec------ccccCC
Q 001123 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDD 418 (1149)
Q Consensus 345 L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~------g~~~~~ 418 (1149)
+.+|.+|...+..+.+++.. ++..+++|+.|+..++|+. ..+.+|
T Consensus 189 ~~~~~~h~~~v~~~~~~~~~-----------------------------~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h 239 (354)
T 2pbi_B 189 LQSFHGHGADVLCLDLAPSE-----------------------------TGNTFVSGGCDKKAMVWDMRSGQCVQAFETH 239 (354)
T ss_dssp EEEEECCSSCEEEEEECCCS-----------------------------SCCEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred EEEEcCCCCCeEEEEEEeCC-----------------------------CCCEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence 99998877654444443321 2345667777777777762 246788
Q ss_pred CCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecC--CccEEEEEe--cCCEEEEeecCcEEEEEeCC-Ccee
Q 001123 419 NRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL--PFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLL 491 (1149)
Q Consensus 419 ~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH--~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l 491 (1149)
...|.+++++|++. +++|+.|++|++||+ +++++..+..+ ...+.++++ +|++|++|+.|++|++||+. |+++
T Consensus 240 ~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~ 319 (354)
T 2pbi_B 240 ESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV 319 (354)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEE
T ss_pred CCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceE
Confidence 89999999999986 889999999999999 67777766544 346777765 69999999999999999974 8899
Q ss_pred eeeeccCCCeEEEE--ecCCeEEeecCCCceeeee
Q 001123 492 GGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWN 524 (1149)
Q Consensus 492 ~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWd 524 (1149)
..+.+|.+.|.+++ +||++|+|||.|++||+|+
T Consensus 320 ~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 320 SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999999998 5999999999999999996
No 19
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=9.5e-32 Score=303.46 Aligned_cols=280 Identities=18% Similarity=0.217 Sum_probs=217.5
Q ss_pred eec-CCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcE
Q 001123 188 VKG-VSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGI 264 (1149)
Q Consensus 188 ~~G-~~~V~~lafs~dg-~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTI 264 (1149)
+.| .++|.+|+|+|++ .+|+|||.|++|++|++.+... ....++.+++||.++|++++|+|+|+ |+|||.|++|
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~---~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v 89 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ---KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT---EEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc---cccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEE
Confidence 445 8999999999965 8999999999999999865321 11123567899999999999999998 7999999999
Q ss_pred EEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCcc
Q 001123 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE 343 (1149)
Q Consensus 265 RVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~ 343 (1149)
||||+.+++....+. +|. ..+.++++++++..+++++ |++|++||++ ++
T Consensus 90 ~~wd~~~~~~~~~~~-------------------~h~----------~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~ 139 (319)
T 3frx_A 90 RLWDVATGETYQRFV-------------------GHK----------SDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQ 139 (319)
T ss_dssp EEEETTTTEEEEEEE-------------------CCS----------SCEEEEEECTTSCEEEEEETTSCEEEEETT-SC
T ss_pred EEEECCCCCeeEEEc-------------------cCC----------CcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CC
Confidence 999998876443322 222 5678888888888888876 6789999986 66
Q ss_pred EEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec------ccccC
Q 001123 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGD 417 (1149)
Q Consensus 344 ~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~------g~~~~ 417 (1149)
++.++.+|...+..+.+.+.... .+++..+++++.|+..++|+. ..+.+
T Consensus 140 ~~~~~~~h~~~v~~~~~~~~~~~-------------------------~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 194 (319)
T 3frx_A 140 CLATLLGHNDWVSQVRVVPNEKA-------------------------DDDSVTIISAGNDKMVKAWNLNQFQIEADFIG 194 (319)
T ss_dssp EEEEECCCSSCEEEEEECCC-------------------------------CCEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred eEEEEeccCCcEEEEEEccCCCC-------------------------CCCccEEEEEeCCCEEEEEECCcchhheeecC
Confidence 77788777766555555442211 112335677788887777763 24678
Q ss_pred CCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCCC-ceee
Q 001123 418 DNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEG-NLLG 492 (1149)
Q Consensus 418 ~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~G-~~l~ 492 (1149)
|...|.+++++|+|. |++|+.||+|++||+ +++++.++..| ..|.++++ +|.+|++++.+ .|++|+++. .++.
T Consensus 195 h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~ 272 (319)
T 3frx_A 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVD 272 (319)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEE
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeee
Confidence 999999999999987 889999999999999 78889888765 68998876 68999988765 499999873 4444
Q ss_pred eee--------ccCCCeEEEE--ecCCeEEeecCCCceeeeeccC
Q 001123 493 GWV--------AHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 493 ~l~--------gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
.+. +|...|.+++ +||++|++|+.|++||+||+.+
T Consensus 273 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 273 DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp EECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred ccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 443 4677899888 6999999999999999999864
No 20
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-31 Score=313.87 Aligned_cols=288 Identities=15% Similarity=0.146 Sum_probs=227.0
Q ss_pred cceeEEEEEee--CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEE
Q 001123 131 IGCFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVW 207 (1149)
Q Consensus 131 ~~~~l~~l~~~--~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~La 207 (1149)
+...+..++.+ ...+++ +.|++|+|||+.++..... + ..| .++|.+++|+|+|++|+
T Consensus 107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~-----------------l--~~h-~~~V~~v~~~~~~~~l~ 166 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT-----------------L--KGH-TDSVQDISFDHSGKLLA 166 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEE-----------------E--CCC-SSCEEEEEECTTSSEEE
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE-----------------E--ecc-CCcEEEEEEcCCCCEEE
Confidence 44567777776 345555 4699999999988775543 1 123 78999999999999999
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceee
Q 001123 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (1149)
Q Consensus 208 SGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~ 286 (1149)
||+.||+|++||+.++. .+.++.||.+.|++++|+|+|. |+|||.|++|++||+.++.+...+..
T Consensus 167 sgs~D~~i~iwd~~~~~--------~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~------ 232 (410)
T 1vyh_C 167 SCSADMTIKLWDFQGFE--------CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG------ 232 (410)
T ss_dssp EEETTSCCCEEETTSSC--------EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC------
T ss_pred EEeCCCeEEEEeCCCCc--------eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeC------
Confidence 99999999999998765 3677899999999999999997 89999999999999988765433321
Q ss_pred EEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCC
Q 001123 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (1149)
Q Consensus 287 a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~ 365 (1149)
| ...+.++.+++++..+++++ |++|++||+.++++...+..|...+.++.+++...
T Consensus 233 -------------h----------~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 289 (410)
T 1vyh_C 233 -------------H----------REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESS 289 (410)
T ss_dssp -------------C----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCG
T ss_pred -------------C----------CccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCccc
Confidence 2 14567778888888888765 68899999999999999999988888888887544
Q ss_pred ccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec------ccccCCCCceEEEEEcCCCc-EEEEeC
Q 001123 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDDNRRTEALTTSIDGM-IWTGGA 438 (1149)
Q Consensus 366 ~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~------g~~~~~~~~V~ava~s~Dg~-laSgs~ 438 (1149)
....... .... .......+..+++|+.|+..++|+. ..+.+|...|.+++++|+|. |++|+.
T Consensus 290 ~~~~~~~-----~~~~------~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~ 358 (410)
T 1vyh_C 290 YSSISEA-----TGSE------TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD 358 (410)
T ss_dssp GGGGGGC-----CSCC-------------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEET
T ss_pred ccchhhh-----cccc------ccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeC
Confidence 3211000 0000 0011123456889999998888873 25678999999999999986 899999
Q ss_pred CCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeC
Q 001123 439 NGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDL 486 (1149)
Q Consensus 439 DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~ 486 (1149)
|++|++||+ +++++.++.+|...|+++++ +|++|++|+.||+|+|||.
T Consensus 359 D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 359 DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp TTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999 78999999999999999976 6899999999999999985
No 21
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.4e-31 Score=298.67 Aligned_cols=271 Identities=20% Similarity=0.234 Sum_probs=219.7
Q ss_pred eec-CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEE
Q 001123 188 VKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (1149)
Q Consensus 188 ~~G-~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIR 265 (1149)
+.| ..+|.+++|+|+|++|+||+.||+|++|++.++. ....+.+|..+|++++|+|+|+ |++|+.|++|+
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~--------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~ 90 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--------FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 90 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc--------cchhhccCCCceEEEEEcCCCCEEEEECCCCEEE
Confidence 445 8899999999999999999999999999998765 3667899999999999999997 79999999999
Q ss_pred EEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccE
Q 001123 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL 344 (1149)
Q Consensus 266 VWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~ 344 (1149)
+||+.+++....+. +| ...+.++.+.+++..+++++ +++|++||++++++
T Consensus 91 vwd~~~~~~~~~~~-------------------~~----------~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 141 (312)
T 4ery_A 91 IWDVSSGKCLKTLK-------------------GH----------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 141 (312)
T ss_dssp EEETTTCCEEEEEE-------------------CC----------SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred EEECCCCcEEEEEc-------------------CC----------CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE
Confidence 99998765433221 12 24577788888888888765 67899999999999
Q ss_pred EEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecc------c-ccC
Q 001123 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG------G-FGD 417 (1149)
Q Consensus 345 L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g------~-~~~ 417 (1149)
+..+..+...+.. +.|.+++..+++++.++..++|+.. . ...
T Consensus 142 ~~~~~~~~~~v~~-------------------------------~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 190 (312)
T 4ery_A 142 LKTLPAHSDPVSA-------------------------------VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 190 (312)
T ss_dssp EEEECCCSSCEEE-------------------------------EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred EEEecCCCCcEEE-------------------------------EEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEecc
Confidence 8888765544333 3444555566777777777776522 1 234
Q ss_pred CCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEE----E-ecCCEEEEeecCcEEEEEeCC-Cc
Q 001123 418 DNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL----C-TFGSQIWVGYMNGIVQVLDLE-GN 489 (1149)
Q Consensus 418 ~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sl----s-~dG~~LaSGs~DGtIrlWD~~-G~ 489 (1149)
+...+..++++|++. +++++.|++|++||+ ++++++.+.+|...+.++ . .+|++|++|+.||+|++||+. ++
T Consensus 191 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 270 (312)
T 4ery_A 191 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270 (312)
T ss_dssp SCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC
T ss_pred CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch
Confidence 556788899999987 789999999999999 789999999987754432 2 258999999999999999986 78
Q ss_pred eeeeeeccCCCeEEEE--ecCCeEEeec--CCCceeeeecc
Q 001123 490 LLGGWVAHSSPVIKMA--VGAGYIFTLA--NHGGIRGWNVT 526 (1149)
Q Consensus 490 ~l~~l~gH~~~V~sLa--~Dg~~LaSgS--~DgtIRlWdl~ 526 (1149)
++..+.+|.+.|.+++ ++++++++++ .|++|++|+.+
T Consensus 271 ~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 271 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred hhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 8999999999999998 5889999986 69999999853
No 22
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-32 Score=305.28 Aligned_cols=288 Identities=13% Similarity=0.120 Sum_probs=202.5
Q ss_pred cceeEEEEEeeCCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEE
Q 001123 131 IGCFLRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (1149)
Q Consensus 131 ~~~~l~~l~~~~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSG 209 (1149)
+...+.+++.....|.+ +.|++||+||+.++..... ..+....| ..+|.+++|+|++++|+||
T Consensus 13 h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~---------------~~~~~~~h-~~~v~~v~~sp~~~~las~ 76 (330)
T 2hes_X 13 YKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLI---------------DVLDETAH-KKAIRSVAWRPHTSLLAAG 76 (330)
T ss_dssp CSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEE---------------EEECTTCC-CSCEEEEEECTTSSEEEEE
T ss_pred CCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEE---------------EEEecCCc-cCCEEEEEECCCCCEEEEE
Confidence 34466677777776655 5699999999976421100 00001114 6789999999999999999
Q ss_pred eCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEE
Q 001123 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (1149)
Q Consensus 210 S~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~ 288 (1149)
+.|++|++||+..... ..........+.||.++|++|+|+|+|+ |+|||.|++||+||+....... ....
T Consensus 77 s~D~~v~iw~~~~~~~-~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~------~~~~-- 147 (330)
T 2hes_X 77 SFDSTVSIWAKEESAD-RTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY------ECIS-- 147 (330)
T ss_dssp ETTSCEEEEEC--------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCC------EEEE--
T ss_pred eCCCcEEEEEcccCcC-ccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCe------EEEE--
Confidence 9999999999864220 0011234567899999999999999997 8999999999999994321100 0000
Q ss_pred EeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCc--cEEEEEecCCceeeEEeeccCCC
Q 001123 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR--ELLKVFNIDGQIENRVDMSLLPD 365 (1149)
Q Consensus 289 ~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG--~~L~~l~~~g~~~~~v~~S~~~~ 365 (1149)
.+.+| ...+.++++++++..+++++ |++|++||..++ +++.+
T Consensus 148 -------~~~~h----------~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~------------------ 192 (330)
T 2hes_X 148 -------VLQEH----------SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAV------------------ 192 (330)
T ss_dssp -------EECCC----------SSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEE------------------
T ss_pred -------EeccC----------CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEE------------------
Confidence 01122 25688899999988888876 678999998765 23332
Q ss_pred ccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCC--Cc-EEEEeCCCeE
Q 001123 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID--GM-IWTGGANGLL 442 (1149)
Q Consensus 366 ~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~D--g~-laSgs~DgtI 442 (1149)
+.+|...|.+++++|+ +. +++|+.|++|
T Consensus 193 -------------------------------------------------~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v 223 (330)
T 2hes_X 193 -------------------------------------------------LNGHEGTVWSSDFDKTEGVFRLCSGSDDSTV 223 (330)
T ss_dssp -------------------------------------------------ECCCSSCEEEEEECCSSSSCEEEEEETTSCE
T ss_pred -------------------------------------------------ccCCCCcEEEEEecCCCCeeEEEEEeCCCeE
Confidence 2344555667778887 44 8899999999
Q ss_pred EEEeC-CC--------CeeEeeec-CCccEEEEEec-CCEEEEeecCcEEEEEeCC-C--cee-eeeeccCC-CeEEEE-
Q 001123 443 LQWDP-NG--------NRLQDFQY-LPFAVQCLCTF-GSQIWVGYMNGIVQVLDLE-G--NLL-GGWVAHSS-PVIKMA- 505 (1149)
Q Consensus 443 rlWD~-tG--------~~l~tl~g-H~~~V~sls~d-G~~LaSGs~DGtIrlWD~~-G--~~l-~~l~gH~~-~V~sLa- 505 (1149)
++||+ ++ .++..+.+ |...|+++++. +.+|++|+.||+|+|||.. + +++ ..+.+|.. .|.+++
T Consensus 224 ~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~ 303 (330)
T 2hes_X 224 RVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKW 303 (330)
T ss_dssp EEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEE
T ss_pred EEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEE
Confidence 99999 33 45666765 99999999874 6799999999999999975 4 233 34578988 899998
Q ss_pred -e--cCCeEEeecCCCceeeeeccC
Q 001123 506 -V--GAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 506 -~--Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
+ ++++|+|||.|++||+|++..
T Consensus 304 ~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 304 LELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp C-----CCEEEEETTSEEEEEEC--
T ss_pred ecCCCceEEEEecCCCcEEEEEecc
Confidence 3 678999999999999999753
No 23
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-31 Score=305.17 Aligned_cols=275 Identities=15% Similarity=0.144 Sum_probs=209.2
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccce-EEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEV-LSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 192 ~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~-~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
+.|.+++|+|+|++||||+.|++||+||+.++.. ... ....||.+.|++|+|+|+|+ |+|||.|++|+||++
T Consensus 17 ~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~------~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~ 90 (345)
T 3fm0_A 17 SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW------ICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKK 90 (345)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE------EEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc------eeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEc
Confidence 3899999999999999999999999999987531 111 22379999999999999997 899999999999998
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCcc---EE
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE---LL 345 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~---~L 345 (1149)
.+..... .. .+.+|. ..+.++++++++..+++++ |++|++||+.+++ ++
T Consensus 91 ~~~~~~~--------~~---------~~~~h~----------~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 143 (345)
T 3fm0_A 91 NQDDFEC--------VT---------TLEGHE----------NEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV 143 (345)
T ss_dssp CCC-EEE--------EE---------EECCCS----------SCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEE
T ss_pred cCCCeEE--------EE---------EccCCC----------CCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEE
Confidence 6542110 00 112232 5688899999999888876 6789999998764 34
Q ss_pred EEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec--------ccccC
Q 001123 346 KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--------GGFGD 417 (1149)
Q Consensus 346 ~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~--------g~~~~ 417 (1149)
..+..|...+ ..+.|.+++..+++++.|+..++|+. ..+.+
T Consensus 144 ~~~~~h~~~v-------------------------------~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~ 192 (345)
T 3fm0_A 144 SVLNSHTQDV-------------------------------KHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEG 192 (345)
T ss_dssp EEECCCCSCE-------------------------------EEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECC
T ss_pred EEecCcCCCe-------------------------------EEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecC
Confidence 4554444433 33455555666677777776666641 24678
Q ss_pred CCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-C-C--------------CeeEeeec-CCccEEEEEe--cCCEEEEeec
Q 001123 418 DNRRTEALTTSIDGM-IWTGGANGLLLQWDP-N-G--------------NRLQDFQY-LPFAVQCLCT--FGSQIWVGYM 477 (1149)
Q Consensus 418 ~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-t-G--------------~~l~tl~g-H~~~V~sls~--dG~~LaSGs~ 477 (1149)
|...|.+++++|+|. |++|+.|++|+|||. . + +|+.++.+ |...|+++++ ++..|++|+.
T Consensus 193 h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~ 272 (345)
T 3fm0_A 193 HESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG 272 (345)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET
T ss_pred CCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC
Confidence 999999999999987 889999999999996 2 1 35566666 8889999976 6899999999
Q ss_pred CcEEEEEeCC-Cc---------eeeeeeccCCCeEEEEe--cC-CeEEeecCCCceeeeeccCCCC
Q 001123 478 NGIVQVLDLE-GN---------LLGGWVAHSSPVIKMAV--GA-GYIFTLANHGGIRGWNVTSPGP 530 (1149)
Q Consensus 478 DGtIrlWD~~-G~---------~l~~l~gH~~~V~sLa~--Dg-~~LaSgS~DgtIRlWdl~sp~p 530 (1149)
|++|++||.+ +. ....+.+|.+.|++|++ ++ .+|+|||.||+||+|++..+.+
T Consensus 273 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 273 DDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp TSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred CCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 9999999965 21 12345699999999994 55 5899999999999999876544
No 24
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-30 Score=334.49 Aligned_cols=361 Identities=9% Similarity=0.058 Sum_probs=243.6
Q ss_pred eeEEEEEee--CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEE
Q 001123 133 CFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (1149)
Q Consensus 133 ~~l~~l~~~--~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSG 209 (1149)
..+.+|+.+ ...|.+ +.|++|||||..++..... ..+ ..+|.+|+|+| |++|+||
T Consensus 18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~--------------------~~~-~~~V~~l~fsp-g~~L~S~ 75 (902)
T 2oaj_A 18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIK--------------------LED-RSAIKEMRFVK-GIYLVVI 75 (902)
T ss_dssp SCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEE--------------------CSS-CCCEEEEEEET-TTEEEEE
T ss_pred CCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEE--------------------cCC-CCCEEEEEEcC-CCEEEEE
Confidence 356677776 344444 4699999999875443211 012 67899999999 8899999
Q ss_pred eCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCccee-----------ee
Q 001123 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKA-----------LS 277 (1149)
Q Consensus 210 S~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~-----------~~ 277 (1149)
+.|++|++||+.++.+ +.++. |.+.|++++|+|+++ |++|+.||+|++||+.+++.. ..
T Consensus 76 s~D~~v~lWd~~~~~~--------~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~ 146 (902)
T 2oaj_A 76 NAKDTVYVLSLYSQKV--------LTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFF 146 (902)
T ss_dssp ETTCEEEEEETTTCSE--------EEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTC
T ss_pred ECcCeEEEEECCCCcE--------EEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccc
Confidence 9999999999988652 55565 778999999999998 899999999999999876532 01
Q ss_pred cCCCcceeeEEEeeec--------------ccccccccccccee-----------------eeecCCeEEEEEcCCCCEE
Q 001123 278 LKPEERHTAALIVERS--------------YIDLRSHLSVNGFS-----------------SILTSDIKNLLSDHSRAKV 326 (1149)
Q Consensus 278 l~~~~~~~~a~~~~~~--------------~~~l~~~~~~~g~~-----------------~~~~~dv~~las~~~~~~v 326 (1149)
+..+...+.++..... .|+++......... ..+...+.++++++++..+
T Consensus 147 ~~~h~~~V~sl~~sp~~~~~l~~g~~dg~vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 226 (902)
T 2oaj_A 147 PAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHI 226 (902)
T ss_dssp SSSCCCCCCEEEEETTEEEEEEEECSSCEEEEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEE
T ss_pred cccCCCCeEEEEEccCCCCEEEEEeCCCcEEEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEE
Confidence 1112222222211110 11111100000000 0012458999999999988
Q ss_pred EEec-CCceEEEEcCCccEEEE--Ee---cC-------------CceeeEEeeccCC--C--c-cc--------------
Q 001123 327 WSAG-FLSFALWDARTRELLKV--FN---ID-------------GQIENRVDMSLLP--D--F-AM-------------- 368 (1149)
Q Consensus 327 ~Sas-d~tIrLWD~~TG~~L~~--l~---~~-------------g~~~~~v~~S~~~--~--~-~~-------------- 368 (1149)
++++ |++|++||+++|+++.. +. .+ ...+..+.+++.. + . .+
T Consensus 227 asgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~ 306 (902)
T 2oaj_A 227 ITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLT 306 (902)
T ss_dssp EEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEE
T ss_pred EEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEE
Confidence 8876 67899999999998764 21 11 1234444442210 0 0 00
Q ss_pred --c--------------------------------------------------------------ccceeeEEec-CCC-
Q 001123 369 --E--------------------------------------------------------------DEFKTKIVTS-SKK- 382 (1149)
Q Consensus 369 --~--------------------------------------------------------------~~~~~~~~s~-~~k- 382 (1149)
. .+..+++|.. .+.
T Consensus 307 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~ 386 (902)
T 2oaj_A 307 MIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIF 386 (902)
T ss_dssp EEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCE
T ss_pred EEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCc
Confidence 0 0001122221 000
Q ss_pred --------------Cc----------------------------------cceeeeeeccccceEeecCCcEEEEeec--
Q 001123 383 --------------DK----------------------------------AQSSFGFFQRSRNAIMGAADAVRRVAAK-- 412 (1149)
Q Consensus 383 --------------~~----------------------------------~~~si~f~~~~~~~i~G~~d~v~rv~~~-- 412 (1149)
.. .+.++.|++++..+++|+.|+..++|+.
T Consensus 387 ~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~ 466 (902)
T 2oaj_A 387 TDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASH 466 (902)
T ss_dssp ECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSC
T ss_pred ccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCC
Confidence 00 0112345677788899999999999873
Q ss_pred cccc---------------CCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CC--------------------------
Q 001123 413 GGFG---------------DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NG-------------------------- 449 (1149)
Q Consensus 413 g~~~---------------~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG-------------------------- 449 (1149)
+.+. +|...|.+|+|+|||+ ||+|+.||+|+|||+ ++
T Consensus 467 g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (902)
T 2oaj_A 467 GDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNT 546 (902)
T ss_dssp CTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGS
T ss_pred ccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCC
Confidence 2111 6777899999999987 789999999999999 44
Q ss_pred -------------------CeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCCCc-ee-----eeee-ccCCCe
Q 001123 450 -------------------NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGN-LL-----GGWV-AHSSPV 501 (1149)
Q Consensus 450 -------------------~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~G~-~l-----~~l~-gH~~~V 501 (1149)
+++.++.+|...|+++++ || +||+|+.|++|+|||+++. ++ ..+. ||++.|
T Consensus 547 ~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V 625 (902)
T 2oaj_A 547 NGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACV 625 (902)
T ss_dssp SCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCE
T ss_pred ccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccce
Confidence 257888999999999875 79 9999999999999998854 32 3454 999999
Q ss_pred EEEEec----------CCeEEeecCCCceeeeec
Q 001123 502 IKMAVG----------AGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 502 ~sLa~D----------g~~LaSgS~DgtIRlWdl 525 (1149)
++|++. +++|+||+.|++||+||+
T Consensus 626 ~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 626 TCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp EEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred EEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 999854 379999999999999998
No 25
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.4e-30 Score=343.98 Aligned_cols=372 Identities=14% Similarity=0.145 Sum_probs=240.7
Q ss_pred cceeEEEEEee--CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEE
Q 001123 131 IGCFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVW 207 (1149)
Q Consensus 131 ~~~~l~~l~~~--~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~La 207 (1149)
+...+..++.. +..+.+ +.|++|++||+.++..... + ..| .++|.|++|+|+|++|+
T Consensus 614 h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~-----------------~--~~h-~~~v~~~~~s~~~~~l~ 673 (1249)
T 3sfz_A 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLD-----------------I--KAH-EDEVLCCAFSSDDSYIA 673 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-----------------E--CCC-SSCEEEEEECTTSSEEE
T ss_pred ccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE-----------------e--ccC-CCCEEEEEEecCCCEEE
Confidence 33456666665 445554 5699999999988775543 1 123 78999999999999999
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc---EEEEECCCcEEEEeCCCcceeeecCCCcce
Q 001123 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD---LWSGSEGGGIKIWPWEAIEKALSLKPEERH 284 (1149)
Q Consensus 208 SGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~---L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~ 284 (1149)
||+.||+|++||+.++. .+.++.+|.++|++++|+|++. ++|||.|++|++||+.+++....+..+...
T Consensus 674 s~~~d~~v~vwd~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~ 745 (1249)
T 3sfz_A 674 TCSADKKVKIWDSATGK--------LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS 745 (1249)
T ss_dssp EEETTSEEEEEETTTCC--------EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSC
T ss_pred EEeCCCeEEEEECCCCc--------eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCC
Confidence 99999999999999875 4778999999999999999653 689999999999999987765554444333
Q ss_pred eeEEEeee------------c--cccccccc-----------------------ccccee--------------------
Q 001123 285 TAALIVER------------S--YIDLRSHL-----------------------SVNGFS-------------------- 307 (1149)
Q Consensus 285 ~~a~~~~~------------~--~~~l~~~~-----------------------~~~g~~-------------------- 307 (1149)
+.++.... . .+++.... .+...+
T Consensus 746 v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d 825 (1249)
T 3sfz_A 746 VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFD 825 (1249)
T ss_dssp EEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEE
T ss_pred EEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEE
Confidence 32222211 0 11211100 000000
Q ss_pred -----------eeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCcccc--ccce
Q 001123 308 -----------SILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAME--DEFK 373 (1149)
Q Consensus 308 -----------~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~--~~~~ 373 (1149)
..+...+.++++++++..+++++ +++|++||+.++.++..+.+|...+..+.+++.+...+. .+..
T Consensus 826 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~ 905 (1249)
T 3sfz_A 826 IHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT 905 (1249)
T ss_dssp TTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCe
Confidence 01234566778888888887765 578999999999999999998888888888876544322 1112
Q ss_pred eeEEecCC----------------------------------------------CCccceeeeeeccccceEeecCCcEE
Q 001123 374 TKIVTSSK----------------------------------------------KDKAQSSFGFFQRSRNAIMGAADAVR 407 (1149)
Q Consensus 374 ~~~~s~~~----------------------------------------------k~~~~~si~f~~~~~~~i~G~~d~v~ 407 (1149)
+++|.... ....+..+.+.+++..+++|..++..
T Consensus 906 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i 985 (1249)
T 3sfz_A 906 IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAI 985 (1249)
T ss_dssp EEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCC
T ss_pred EEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCE
Confidence 22222100 01123345566666666666666655
Q ss_pred EEeec------ccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEec-CCEEEEeecC
Q 001123 408 RVAAK------GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF-GSQIWVGYMN 478 (1149)
Q Consensus 408 rv~~~------g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~d-G~~LaSGs~D 478 (1149)
++++. ..+.+|...|.+++++|+|. +++|+.||+|++||+ +|+++ .+.+|...|.++++. +..+++++.|
T Consensus 986 ~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~~l~~~~~d 1064 (1249)
T 3sfz_A 986 KIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDSRLLSWSFD 1064 (1249)
T ss_dssp EEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSSEEEEEESS
T ss_pred EEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCCcEEEEECC
Confidence 55541 13445666666666666664 666666677777776 34433 345666666666553 4556666666
Q ss_pred cEEEEEeCC-CceeeeeeccCCCeEEEE--ecCCeEEeecCCCceeeeeccCCCCC
Q 001123 479 GIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSPGPL 531 (1149)
Q Consensus 479 GtIrlWD~~-G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~sp~pl 531 (1149)
|+|++||+. |+++..+.+|.+.|.+++ +|++++++++.|++|++||+.+..++
T Consensus 1065 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~ 1120 (1249)
T 3sfz_A 1065 GTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL 1120 (1249)
T ss_dssp SEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCS
T ss_pred CcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCccee
Confidence 666666654 666666666666666665 46666666666666666666554443
No 26
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-31 Score=304.85 Aligned_cols=307 Identities=13% Similarity=0.139 Sum_probs=226.4
Q ss_pred CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCC
Q 001123 149 GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSD 228 (1149)
Q Consensus 149 ~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~ 228 (1149)
.|++|+|||+.++..... .....+ ...|.|++|+|++++|++|+.||+|++||+.+..
T Consensus 43 ~d~~v~iw~~~~~~~~~~-----------------~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~---- 100 (416)
T 2pm9_A 43 TDSSLELWSLLAADSEKP-----------------IASLQV-DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEAN---- 100 (416)
T ss_dssp CCCCCEEEESSSGGGCSC-----------------SCCCCC-SSCEEEEEECSSSSCEEEEESSSCEEEECCSSTT----
T ss_pred CCCeEEEEEccCCCCCcE-----------------EEEEec-CCceEEEEECCCCCeEEEEccCCeEEEeeccccc----
Confidence 588999999987653221 011113 6789999999999999999999999999998621
Q ss_pred CCccceEEeecCCCCEEEEEEeCC-Cc-EEEEECCCcEEEEeCCCcc------eeeecCCCcceeeEEEeeecccccccc
Q 001123 229 DGFGEVLSWQAHRGPVLSLCISSY-GD-LWSGSEGGGIKIWPWEAIE------KALSLKPEERHTAALIVERSYIDLRSH 300 (1149)
Q Consensus 229 ~~~~~~~~l~GH~~~VtsVafSpd-G~-L~SGS~DgTIRVWdl~t~~------~~~~l~~~~~~~~a~~~~~~~~~l~~~ 300 (1149)
........+.+|.++|++++|+|+ +. |++|+.|++|++||+.+++ ....+.. ..+
T Consensus 101 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~----------------~~~- 163 (416)
T 2pm9_A 101 NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ----------------SMS- 163 (416)
T ss_dssp SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCC----------------SCC-
T ss_pred ccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccc----------------ccC-
Confidence 111356788999999999999998 55 8999999999999998764 1111100 011
Q ss_pred ccccceeeeecCCeEEEEEcCC-CCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEe
Q 001123 301 LSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVT 378 (1149)
Q Consensus 301 ~~~~g~~~~~~~dv~~las~~~-~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s 378 (1149)
+...+.+++++++ +..+++++ +++|++||+++++++..+..+...
T Consensus 164 ---------~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~------------------------ 210 (416)
T 2pm9_A 164 ---------SVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN------------------------ 210 (416)
T ss_dssp ---------SSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS------------------------
T ss_pred ---------CCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc------------------------
Confidence 1255778888887 56777765 678999999999998888654211
Q ss_pred cCCCCccceeeeeeccc-cceEeecCCc---EEEEeec-------cccc-CCCCceEEEEEcC-CCc-EEEEeCCCeEEE
Q 001123 379 SSKKDKAQSSFGFFQRS-RNAIMGAADA---VRRVAAK-------GGFG-DDNRRTEALTTSI-DGM-IWTGGANGLLLQ 444 (1149)
Q Consensus 379 ~~~k~~~~~si~f~~~~-~~~i~G~~d~---v~rv~~~-------g~~~-~~~~~V~ava~s~-Dg~-laSgs~DgtIrl 444 (1149)
.++...+..+.|.+++ ..++++..++ ..++|+. ..+. +|...|.+++++| ++. +++|+.|++|++
T Consensus 211 -~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~ 289 (416)
T 2pm9_A 211 -SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLL 289 (416)
T ss_dssp -SCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEE
T ss_pred -cccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEE
Confidence 0011223344555554 3455666665 4455541 2345 7888999999998 765 899999999999
Q ss_pred EeC-CCCeeEeeecCCccEEEEEe--cC-CEEEEeecCcEEEEEeCC-Cceeeeee------------------------
Q 001123 445 WDP-NGNRLQDFQYLPFAVQCLCT--FG-SQIWVGYMNGIVQVLDLE-GNLLGGWV------------------------ 495 (1149)
Q Consensus 445 WD~-tG~~l~tl~gH~~~V~sls~--dG-~~LaSGs~DGtIrlWD~~-G~~l~~l~------------------------ 495 (1149)
||+ +++++.++.+|...|.++++ +| ++|++|+.||+|++||+. ++......
T Consensus 290 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (416)
T 2pm9_A 290 WNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKE 369 (416)
T ss_dssp ECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCS
T ss_pred eeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccc
Confidence 999 79999999999999998876 57 899999999999999976 33222211
Q ss_pred -----------ccCCCeEEEE--ecCCeEEeecCCCceeeeeccCC
Q 001123 496 -----------AHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSP 528 (1149)
Q Consensus 496 -----------gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~sp 528 (1149)
.|..+|.+++ +||++|++++.|++|++|++.+.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 370 KPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 1667776665 69999999999999999998753
No 27
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2e-30 Score=295.03 Aligned_cols=286 Identities=19% Similarity=0.161 Sum_probs=211.6
Q ss_pred eec-CCceEEEEE-----cC-CCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEE
Q 001123 188 VKG-VSSVMCMVG-----DE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS 259 (1149)
Q Consensus 188 ~~G-~~~V~~laf-----s~-dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS 259 (1149)
+.| .++|.|++| ++ ++++|+||+.|++||+||+..+.. ......+...+.||.++|++++|+|++. |+|||
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~-~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s 95 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQ-NGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCC-SSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEE
T ss_pred eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCc-ccccccccchhccCCCceEEEEECCCCCEEEEEc
Confidence 345 889999999 76 899999999999999999976431 0001123567899999999999999997 78999
Q ss_pred CCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEE
Q 001123 260 EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWD 338 (1149)
Q Consensus 260 ~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD 338 (1149)
.|++||+||+.+++....+. +|. ..+.++++++++..+++++ |++|++||
T Consensus 96 ~D~~v~lwd~~~~~~~~~~~-------------------~h~----------~~v~~v~~sp~~~~l~s~~~d~~i~~wd 146 (343)
T 2xzm_R 96 WDKTLRLWDLRTGTTYKRFV-------------------GHQ----------SEVYSVAFSPDNRQILSAGAEREIKLWN 146 (343)
T ss_dssp TTSEEEEEETTSSCEEEEEE-------------------CCC----------SCEEEEEECSSTTEEEEEETTSCEEEEE
T ss_pred CCCcEEEEECCCCcEEEEEc-------------------CCC----------CcEEEEEECCCCCEEEEEcCCCEEEEEe
Confidence 99999999998765433321 222 5678889999988888775 68899999
Q ss_pred cCCccEEEEEe---cCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec---
Q 001123 339 ARTRELLKVFN---IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--- 412 (1149)
Q Consensus 339 ~~TG~~L~~l~---~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~--- 412 (1149)
+. +++...+. .+...+..+.+++...... .+.+.+..+++++.|+..++|+.
T Consensus 147 ~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------------~~~~~~~~l~s~~~d~~i~iwd~~~~ 204 (343)
T 2xzm_R 147 IL-GECKFSSAEKENHSDWVSCVRYSPIMKSAN---------------------KVQPFAPYFASVGWDGRLKVWNTNFQ 204 (343)
T ss_dssp SS-SCEEEECCTTTSCSSCEEEEEECCCCCSCS---------------------CCCSSCCEEEEEETTSEEEEEETTTE
T ss_pred cc-CCceeeeecccCCCceeeeeeecccccccc---------------------ccCCCCCEEEEEcCCCEEEEEcCCCc
Confidence 97 44443332 3444445555554322110 11122345678888888888762
Q ss_pred --ccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CC-CeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEe
Q 001123 413 --GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NG-NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (1149)
Q Consensus 413 --g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG-~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD 485 (1149)
..+.+|...|.+++++|+|. |++|+.||+|++||+ +. .+...+ .+...|+++++ ++++|++| .|+.|++||
T Consensus 205 ~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~ 282 (343)
T 2xzm_R 205 IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFN 282 (343)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEE
T ss_pred eeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEE
Confidence 24668889999999999987 889999999999999 44 444554 34567998876 57777655 688899999
Q ss_pred CC-Cceee--eee-----------ccCCCeEEEE--ecCCeEEeecCCCceeeeeccC
Q 001123 486 LE-GNLLG--GWV-----------AHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 486 ~~-G~~l~--~l~-----------gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
+. ++... .+. +|...|.+++ ++|++|++|+.||+||+|++.+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 283 LMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp SSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred eCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 75 44322 333 8999999998 5899999999999999999754
No 28
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.4e-30 Score=299.21 Aligned_cols=322 Identities=16% Similarity=0.151 Sum_probs=244.4
Q ss_pred EeeCCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 001123 139 VCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMC 217 (1149)
Q Consensus 139 ~~~~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRv 217 (1149)
..++..+++ +.|++|++||+.++..... +.+...+.+.++++++++|++|+.||+|++
T Consensus 65 s~~g~~l~~~~~d~~v~i~d~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 123 (420)
T 3vl1_A 65 EKVGSHLYKARLDGHDFLFNTIIRDGSKM---------------------LKRADYTAVDTAKLQMRRFILGTTEGDIKV 123 (420)
T ss_dssp EEEETTEEEEEETTEEEEEECCSEETTTT---------------------SCSCCEEEEEEECSSSCEEEEEETTSCEEE
T ss_pred eecCCeEEEEEcCCcEEEEEecccceeeE---------------------EecCCceEEEEEecCCCEEEEEECCCCEEE
Confidence 444566666 4599999999987665443 111234455678999999999999999999
Q ss_pred EECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeecccc
Q 001123 218 WKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (1149)
Q Consensus 218 Wdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~ 296 (1149)
||+.++. ....+.+|.++|++++|+|+++ |+||+.|++|++||+.+++....+.
T Consensus 124 wd~~~~~--------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~----------------- 178 (420)
T 3vl1_A 124 LDSNFNL--------QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI----------------- 178 (420)
T ss_dssp ECTTSCE--------EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE-----------------
T ss_pred EeCCCcc--------eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc-----------------
Confidence 9998754 3555689999999999999997 8999999999999998765433221
Q ss_pred ccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecC---CceeeEEeeccCCCccccccc
Q 001123 297 LRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNID---GQIENRVDMSLLPDFAMEDEF 372 (1149)
Q Consensus 297 l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~---g~~~~~v~~S~~~~~~~~~~~ 372 (1149)
+| ...+.++++++++..+++++ |++|++||+++++++..+..+ ...+..+.+.+.......
T Consensus 179 --~h----------~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--- 243 (420)
T 3vl1_A 179 --GH----------RATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLH--- 243 (420)
T ss_dssp --CC----------SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCG---
T ss_pred --CC----------CCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceee---
Confidence 12 25678888988888888765 678999999999999998753 233344444443222211
Q ss_pred eeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecc-------cccCCCCceEEEEEcCCCc--EEEEeCCCeEE
Q 001123 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG-------GFGDDNRRTEALTTSIDGM--IWTGGANGLLL 443 (1149)
Q Consensus 373 ~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g-------~~~~~~~~V~ava~s~Dg~--laSgs~DgtIr 443 (1149)
..+...+..+.|.+++..+++|..++..++|+.. ....|...+.+++++|++. +++|+.||+|+
T Consensus 244 -------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~ 316 (420)
T 3vl1_A 244 -------EISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLA 316 (420)
T ss_dssp -------GGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred -------ecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEE
Confidence 0112334567788889999999999988888632 2245677899999999985 88999999999
Q ss_pred EEeC-CCC-eeEeeec-CCccEEEEEe-cCCEEEEeecCcEEEEEeCCC----------ceeeeeeccCCCeEEEE--ec
Q 001123 444 QWDP-NGN-RLQDFQY-LPFAVQCLCT-FGSQIWVGYMNGIVQVLDLEG----------NLLGGWVAHSSPVIKMA--VG 507 (1149)
Q Consensus 444 lWD~-tG~-~l~tl~g-H~~~V~sls~-dG~~LaSGs~DGtIrlWD~~G----------~~l~~l~gH~~~V~sLa--~D 507 (1149)
+||+ +++ ++..+.+ |...|.++.+ +|++|++|+.||+|++||+.. .....+.+|.+.|.+++ ++
T Consensus 317 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 396 (420)
T 3vl1_A 317 QWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSD 396 (420)
T ss_dssp EEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECC
T ss_pred EEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccC
Confidence 9999 664 4788877 6678888854 789999999999999999652 22345778999999988 58
Q ss_pred CC---eEEeecCCCceeeeeccCC
Q 001123 508 AG---YIFTLANHGGIRGWNVTSP 528 (1149)
Q Consensus 508 g~---~LaSgS~DgtIRlWdl~sp 528 (1149)
++ .+++++.++.+++|+++.|
T Consensus 397 ~~~~g~l~a~g~~g~~~~~~~~~~ 420 (420)
T 3vl1_A 397 DESNGEVLEVGKNNFCALYNLSNP 420 (420)
T ss_dssp SSSSCEEEEEETTTEEEEEESCC-
T ss_pred CCCcceEEEEcCCceEEEEeccCC
Confidence 88 7888888999999998653
No 29
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.1e-30 Score=287.25 Aligned_cols=280 Identities=19% Similarity=0.219 Sum_probs=204.8
Q ss_pred eeec-CCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCc
Q 001123 187 SVKG-VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG 263 (1149)
Q Consensus 187 s~~G-~~~V~~lafs~d-g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgT 263 (1149)
++.| .++|+||+|+|+ +++|+|||.||+||+||+.++.. ....+...++||.++|++++|+|+|+ |+||+.|++
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~---~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~ 109 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET---NYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 109 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS---CSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc---ccceeeEEEeCCCCCEEEEEECCCCCEEEEEccccc
Confidence 3556 899999999998 68999999999999999987542 22234567899999999999999998 799999999
Q ss_pred EEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCc
Q 001123 264 IKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR 342 (1149)
Q Consensus 264 IRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG 342 (1149)
|++|+............ ....+......+.+..+++++ |+.+++||+...
T Consensus 110 i~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~ 160 (340)
T 4aow_A 110 LRLWDLTTGTTTRRFVG-----------------------------HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV 160 (340)
T ss_dssp EEEEETTTTEEEEEEEC-----------------------------CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC
T ss_pred ceEEeecccceeeeecC-----------------------------CCCceeEEEEeecCccceeecCCCeEEEEEeCCC
Confidence 99999976543222111 112344455666667777665 678999998765
Q ss_pred cEEEE-EecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec------ccc
Q 001123 343 ELLKV-FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGF 415 (1149)
Q Consensus 343 ~~L~~-l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~------g~~ 415 (1149)
..... +.++...+..+.+++... ...++++..|+..++|+. ..+
T Consensus 161 ~~~~~~~~~~~~~v~~~~~~~~~~-----------------------------~~~~~s~~~d~~i~i~d~~~~~~~~~~ 211 (340)
T 4aow_A 161 CKYTVQDESHSEWVSCVRFSPNSS-----------------------------NPIIVSCGWDKLVKVWNLANCKLKTNH 211 (340)
T ss_dssp EEEEECSSSCSSCEEEEEECSCSS-----------------------------SCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceEEEEeccccCcccceEEccCCC-----------------------------CcEEEEEcCCCEEEEEECCCCceeeEe
Confidence 44322 222333222222222111 123455666666666652 246
Q ss_pred cCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEec-CCEEEEeecCcEEEEEeCCC-cee
Q 001123 416 GDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF-GSQIWVGYMNGIVQVLDLEG-NLL 491 (1149)
Q Consensus 416 ~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~d-G~~LaSGs~DGtIrlWD~~G-~~l 491 (1149)
.+|...|.+++++|++. |++|+.|++|++||+ +++++..+.+| ..|.++.+. +.++++++.|++|++||+++ .++
T Consensus 212 ~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~ 290 (340)
T 4aow_A 212 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIV 290 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEE
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCceeeccCCCEEEEEECCCCeEE
Confidence 78889999999999987 789999999999999 78888888765 678888763 45677788899999999874 343
Q ss_pred ee---------eeccCCCeEEEE--ecCCeEEeecCCCceeeeeccCC
Q 001123 492 GG---------WVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSP 528 (1149)
Q Consensus 492 ~~---------l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~sp 528 (1149)
.. ..+|...|++++ +||++|+|||.||+||+||+.++
T Consensus 291 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 291 DELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp EEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred EeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 33 457999999998 58999999999999999998764
No 30
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.1e-30 Score=291.58 Aligned_cols=270 Identities=16% Similarity=0.172 Sum_probs=212.1
Q ss_pred ceeEEEEEee--CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEE
Q 001123 132 GCFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (1149)
Q Consensus 132 ~~~l~~l~~~--~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaS 208 (1149)
...+..++.. +..+.+ +.|++|++||+.++..... ...+ ...|.+++|+|+|++|++
T Consensus 55 ~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~-~~~v~~~~~s~~~~~l~s 114 (340)
T 1got_B 55 LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA-------------------IPLR-SSWVMTCAYAPSGNYVAC 114 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEE-------------------EECS-SSCEEEEEECTTSSEEEE
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceE-------------------eecC-CccEEEEEECCCCCEEEE
Confidence 3456666665 445554 5699999999987665432 1223 778999999999999999
Q ss_pred EeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcceeeecCCCcceeeEE
Q 001123 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (1149)
Q Consensus 209 GS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~ 288 (1149)
|+.|++|++|++.++. ........+.||.+.|.+++|+++++|++||.|++|++||+.+++....+.
T Consensus 115 ~~~d~~v~iw~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~--------- 181 (340)
T 1got_B 115 GGLDNICSIYNLKTRE----GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT--------- 181 (340)
T ss_dssp EETTCEEEEEETTTCS----BSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC---------
T ss_pred EeCCCeEEEEECccCC----CcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEc---------
Confidence 9999999999998753 112335678999999999999999999999999999999998876543332
Q ss_pred EeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCcc
Q 001123 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (1149)
Q Consensus 289 ~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~ 367 (1149)
+| ...+.++++++++..+++++ |++|++||+++++++.++.+|...+..
T Consensus 182 ----------~h----------~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~---------- 231 (340)
T 1got_B 182 ----------GH----------TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA---------- 231 (340)
T ss_dssp ----------CC----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEE----------
T ss_pred ----------CC----------CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEE----------
Confidence 12 25677888888888888765 688999999999999988776654433
Q ss_pred ccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecc------cc--cCCCCceEEEEEcCCCc-EEEEeC
Q 001123 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG------GF--GDDNRRTEALTTSIDGM-IWTGGA 438 (1149)
Q Consensus 368 ~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g------~~--~~~~~~V~ava~s~Dg~-laSgs~ 438 (1149)
+.|.|++..+++|+.|+..++|+.. .+ ..+...|.+++++|+|. +++|+.
T Consensus 232 ---------------------v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~ 290 (340)
T 1got_B 232 ---------------------ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290 (340)
T ss_dssp ---------------------EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET
T ss_pred ---------------------EEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECC
Confidence 3455555566777777777777622 12 12234689999999987 789999
Q ss_pred CCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEe
Q 001123 439 NGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (1149)
Q Consensus 439 DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD 485 (1149)
|++|++||+ +++++.++.+|...|.++++ +|++||+|+.||+|+|||
T Consensus 291 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 291 DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999 88999999999999999976 689999999999999997
No 31
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.98 E-value=4.8e-30 Score=310.43 Aligned_cols=335 Identities=10% Similarity=0.075 Sum_probs=237.2
Q ss_pred eEEEEEeeC--C-eEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCC---ceEEEEEcCC-CCE
Q 001123 134 FLRTIVCTE--E-QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVS---SVMCMVGDEA-SGV 205 (1149)
Q Consensus 134 ~l~~l~~~~--~-~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~---~V~~lafs~d-g~~ 205 (1149)
.+..++... . .+++ +.|++|++||+.++..... + ..| .. +|.|++|+|+ +.+
T Consensus 162 ~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~-----------------~--~~~-~~~~~~v~~~~~~~~~~~~ 221 (615)
T 1pgu_A 162 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS-----------------D--RTH-HKQGSFVRDVEFSPDSGEF 221 (615)
T ss_dssp CEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE-----------------E--CSS-SCTTCCEEEEEECSTTCCE
T ss_pred cEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeee-----------------e--ccc-CCCCceEEEEEECCCCCCE
Confidence 455555552 2 4554 5689999999887665432 1 112 45 8999999999 999
Q ss_pred EEEEeCCCeEEEEECCCCCCCCCCCccceEEe-e---cCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCC
Q 001123 206 VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-Q---AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (1149)
Q Consensus 206 LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l-~---GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~ 280 (1149)
|++|+.||+|++||+.++. ....+ . +|.++|++++|+ +++ |++++.|++|++||+.+++....+..
T Consensus 222 l~~~~~dg~i~vwd~~~~~--------~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 292 (615)
T 1pgu_A 222 VITVGSDRKISCFDGKSGE--------FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTL 292 (615)
T ss_dssp EEEEETTCCEEEEETTTCC--------EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EEEEeCCCeEEEEECCCCC--------EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence 9999999999999998865 35666 5 899999999999 887 89999999999999987665443322
Q ss_pred CcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEe-cCCceEEEEcCCccEEEEEecCCceeeEEe
Q 001123 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVD 359 (1149)
Q Consensus 281 ~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sa-sd~tIrLWD~~TG~~L~~l~~~g~~~~~v~ 359 (1149)
+... ....+..+++. ++..++++ .+++|++||+.+++++..+.+|...+..+.
T Consensus 293 ~~~~-------------------------~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~ 346 (615)
T 1pgu_A 293 DKQQ-------------------------LGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALT 346 (615)
T ss_dssp CTTC-------------------------GGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEE
T ss_pred CCCc-------------------------ccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEE
Confidence 1100 01223344444 44555554 467899999999999999888776666666
Q ss_pred eccC---------------------------------CCccc--cccceeeEEecCC-----------------------
Q 001123 360 MSLL---------------------------------PDFAM--EDEFKTKIVTSSK----------------------- 381 (1149)
Q Consensus 360 ~S~~---------------------------------~~~~~--~~~~~~~~~s~~~----------------------- 381 (1149)
+ +. ....+ ..+..+++|....
T Consensus 347 ~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 425 (615)
T 1pgu_A 347 V-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTN 425 (615)
T ss_dssp T-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEET
T ss_pred e-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeC
Confidence 6 33 00000 0111111211100
Q ss_pred -------------------CCccceeeeeeccccceEeecC-CcEEEEeec-------ccccCCCCceEEEEEcCCCc-E
Q 001123 382 -------------------KDKAQSSFGFFQRSRNAIMGAA-DAVRRVAAK-------GGFGDDNRRTEALTTSIDGM-I 433 (1149)
Q Consensus 382 -------------------k~~~~~si~f~~~~~~~i~G~~-d~v~rv~~~-------g~~~~~~~~V~ava~s~Dg~-l 433 (1149)
+...+..+.|. +..++++.. ++..++++. ..+..|...|.+++++|+|. |
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 503 (615)
T 1pgu_A 426 DDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYI 503 (615)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEE
T ss_pred CCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEE
Confidence 00111122222 445566666 666666652 34567788899999999886 7
Q ss_pred EEEeCCCeEEEEeC-CCCeeEeeec-CCccEEEEEe------------cCCEEEEeecCcEEEEEeCC-C-ceeeeeecc
Q 001123 434 WTGGANGLLLQWDP-NGNRLQDFQY-LPFAVQCLCT------------FGSQIWVGYMNGIVQVLDLE-G-NLLGGWVAH 497 (1149)
Q Consensus 434 aSgs~DgtIrlWD~-tG~~l~tl~g-H~~~V~sls~------------dG~~LaSGs~DGtIrlWD~~-G-~~l~~l~gH 497 (1149)
++|+.||+|++||+ +++++..+.+ |...|+++++ +|++||+|+.||+|++||++ + +++..+.+|
T Consensus 504 ~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h 583 (615)
T 1pgu_A 504 AAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH 583 (615)
T ss_dssp EEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS
T ss_pred EEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcC
Confidence 88999999999999 7888888888 9999998865 78999999999999999976 4 788889999
Q ss_pred CCCeEEEE--ecCCeEEeecCCCceeeeeccC
Q 001123 498 SSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 498 ~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
.+.|.+++ +|++ |+|++.|++|++|++..
T Consensus 584 ~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 584 KDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp TTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred ccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 99999987 5888 99999999999999753
No 32
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.98 E-value=2e-30 Score=293.78 Aligned_cols=267 Identities=16% Similarity=0.148 Sum_probs=214.1
Q ss_pred eeEEEEEee------CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCC
Q 001123 133 CFLRTIVCT------EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASG 204 (1149)
Q Consensus 133 ~~l~~l~~~------~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~ 204 (1149)
..+..++.. ...|++ +.|++|||||+.++... +...+.| ..+|.++++++++.
T Consensus 33 ~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~-------------------~~~~l~gh~~~v~~~~~~~~~~ 93 (321)
T 3ow8_A 33 DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD-------------------LQWSLEGHQLGVVSVDISHTLP 93 (321)
T ss_dssp SCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE-------------------EEEEECCCSSCEEEEEECSSSS
T ss_pred CcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee-------------------eeeeeccCCCCEEEEEECCCCC
Confidence 355556543 234555 56999999998754321 1112334 88999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcc
Q 001123 205 VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEER 283 (1149)
Q Consensus 205 ~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~ 283 (1149)
+++||+.|++||+||+.++. .+..+.+|...|.+++|+|+|+ |++|+.|++|++|++++++....+..
T Consensus 94 ~l~s~s~D~~i~lWd~~~~~--------~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~--- 162 (321)
T 3ow8_A 94 IAASSSLDAHIRLWDLENGK--------QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDT--- 162 (321)
T ss_dssp EEEEEETTSEEEEEETTTTE--------EEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEEC---
T ss_pred EEEEEeCCCcEEEEECCCCC--------EEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecC---
Confidence 99999999999999998865 3677889999999999999998 89999999999999987654433211
Q ss_pred eeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeecc
Q 001123 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSL 362 (1149)
Q Consensus 284 ~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~ 362 (1149)
+ ...+.++++++++..+++++ |++|++||+++++++.++.+|...+
T Consensus 163 ----------------~----------~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v------- 209 (321)
T 3ow8_A 163 ----------------R----------GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI------- 209 (321)
T ss_dssp ----------------S----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCC-------
T ss_pred ----------------C----------CceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCce-------
Confidence 1 14567788889998888775 6789999999999998887655432
Q ss_pred CCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec------ccccCCCCceEEEEEcCCCc-EEE
Q 001123 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDDNRRTEALTTSIDGM-IWT 435 (1149)
Q Consensus 363 ~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~------g~~~~~~~~V~ava~s~Dg~-laS 435 (1149)
.++.|.+++..+++|+.|+..++|+. ..+.+|...|.+++++|++. |++
T Consensus 210 ------------------------~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s 265 (321)
T 3ow8_A 210 ------------------------RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVS 265 (321)
T ss_dssp ------------------------CEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ------------------------eEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEE
Confidence 34456666667778888887777762 35678899999999999986 889
Q ss_pred EeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeC
Q 001123 436 GGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDL 486 (1149)
Q Consensus 436 gs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~ 486 (1149)
|+.|++|++||+ ++++++++.+|...|+++++ +|++|++|+.||+|+|||.
T Consensus 266 ~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 266 SSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 999999999999 79999999999999999977 6899999999999999995
No 33
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.5e-30 Score=296.73 Aligned_cols=282 Identities=13% Similarity=0.098 Sum_probs=217.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
.+.|.|++|+|++++|++|+.||+|++||..+ .....+.+|.++|++++|+|+++ |++++.|++|++||+
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 178 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWNKTG---------ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNV 178 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEETTS---------CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEEC
Confidence 56899999999999999999999999999543 24778899999999999999997 899999999999999
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEe
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~ 349 (1149)
.+++....+.......... ....+. .....+.++++.+++..+..+.++.|++||+.+++.+..+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~-------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 244 (425)
T 1r5m_A 179 ISGTVMQHFELKETGGSSI-------NAENHS-------GDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLI 244 (425)
T ss_dssp TTTEEEEEECCC-----------------------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEEC
T ss_pred CCCcEEEEeeccccCccce-------eecccc-------CCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeec
Confidence 8876554443222110000 000000 00111445555565555555567889999999988877776
Q ss_pred cCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec------ccccCCCCceE
Q 001123 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDDNRRTE 423 (1149)
Q Consensus 350 ~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~------g~~~~~~~~V~ 423 (1149)
.+...+ ..+.|.+++..++++..++..++|+. ..+..|...+.
T Consensus 245 ~~~~~i-------------------------------~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~ 293 (425)
T 1r5m_A 245 GHHGPI-------------------------------SVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIV 293 (425)
T ss_dssp CCSSCE-------------------------------EEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEE
T ss_pred cCCCce-------------------------------EEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEE
Confidence 554433 23455555566677777776666652 23556888999
Q ss_pred EEEEcCCCcEEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-Cc----------
Q 001123 424 ALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GN---------- 489 (1149)
Q Consensus 424 ava~s~Dg~laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~---------- 489 (1149)
++.++|++.+++++.|++|++||+ +++++..+..|...|.++++ +|++|++|+.||.|++||+. ++
T Consensus 294 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 373 (425)
T 1r5m_A 294 SASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNR 373 (425)
T ss_dssp EEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC---------
T ss_pred EEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeeccc
Confidence 999999998899999999999999 78999999999999999876 69999999999999999986 66
Q ss_pred ----------eeeeeeccCC--CeEEEE--ecCCeEEeecCCCceeeeecc
Q 001123 490 ----------LLGGWVAHSS--PVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 490 ----------~l~~l~gH~~--~V~sLa--~Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
++..+.+|.. .|.+++ +++++|++++.|++|++|++.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 374 DGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp -----CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 8899999987 999998 488999999999999999974
No 34
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.97 E-value=3.7e-30 Score=295.31 Aligned_cols=245 Identities=13% Similarity=0.163 Sum_probs=187.2
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCC---CCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLD---SDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIW 267 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~---~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVW 267 (1149)
...|.+++|+|||++|++|+ |+++|+||....... .............|..+|++|+|+|+++|++||.||+||||
T Consensus 30 ~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lW 108 (344)
T 4gqb_B 30 ERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELW 108 (344)
T ss_dssp CSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEE
T ss_pred cCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEE
Confidence 45789999999999999988 888999974211000 00111112234557889999999999999999999999999
Q ss_pred eCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEE
Q 001123 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (1149)
Q Consensus 268 dl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~ 346 (1149)
|+++++....+. ....+| ...|.++++++++..|++++ |++|++||++++++++
T Consensus 109 d~~~~~~~~~~~---------------~~~~~H----------~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~ 163 (344)
T 4gqb_B 109 ELDENETLIVSK---------------FCKYEH----------DDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS 163 (344)
T ss_dssp EECTTSSCEEEE---------------EEEECC----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred eccCCCceeEee---------------ccccCC----------CCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 998765432211 001123 26788999999999999876 6789999999998877
Q ss_pred EEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEE
Q 001123 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (1149)
Q Consensus 347 ~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava 426 (1149)
+|.+ |...|.+++
T Consensus 164 ~~~~-------------------------------------------------------------------h~~~V~~~~ 176 (344)
T 4gqb_B 164 SYRA-------------------------------------------------------------------HAAQVTCVA 176 (344)
T ss_dssp EECC-------------------------------------------------------------------CSSCEEEEE
T ss_pred EEcC-------------------------------------------------------------------cCCceEEEE
Confidence 6543 334456677
Q ss_pred EcCCCc--EEEEeCCCeEEEEeC-CCCeeEeee--cCCccEEEEEe---cCCEEEEeecCcEEEEEeCC-Cceeeeeecc
Q 001123 427 TSIDGM--IWTGGANGLLLQWDP-NGNRLQDFQ--YLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH 497 (1149)
Q Consensus 427 ~s~Dg~--laSgs~DgtIrlWD~-tG~~l~tl~--gH~~~V~sls~---dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH 497 (1149)
+++++. +++|+.|++|++||+ +++++..+. .|...+.++++ ++++|++|+.||+|+|||+. ++++.++.+|
T Consensus 177 ~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h 256 (344)
T 4gqb_B 177 ASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVH 256 (344)
T ss_dssp ECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECC
T ss_pred ecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCC
Confidence 888763 689999999999999 788888875 45567888876 36799999999999999976 8899999999
Q ss_pred CCCeEEEEe--cC-CeEEeecCCCceeeeeccCC
Q 001123 498 SSPVIKMAV--GA-GYIFTLANHGGIRGWNVTSP 528 (1149)
Q Consensus 498 ~~~V~sLa~--Dg-~~LaSgS~DgtIRlWdl~sp 528 (1149)
.+.|++|++ ++ ++|+|||.|++||+||+.+.
T Consensus 257 ~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~ 290 (344)
T 4gqb_B 257 SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS 290 (344)
T ss_dssp SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence 999999984 66 57999999999999998653
No 35
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=5.7e-30 Score=285.67 Aligned_cols=252 Identities=12% Similarity=0.058 Sum_probs=180.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCC--Cc-EEEEECCCcEEEE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIW 267 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpd--G~-L~SGS~DgTIRVW 267 (1149)
.++|.+++|+++|++||||+.|++||+||+.++.. ..+.+|.||.++|++|+|+++ |+ |+|||.|++||||
T Consensus 9 ~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~------~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 9 NEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred cCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc------EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 78999999999999999999999999999975321 346789999999999999864 65 8999999999999
Q ss_pred eCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCC--CCEEEEec-CCceEEEEcCCccE
Q 001123 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTREL 344 (1149)
Q Consensus 268 dl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~--~~~v~Sas-d~tIrLWD~~TG~~ 344 (1149)
|++++.... .. .+.+| ...+.++++.++ +..+++++ |++|++||++++..
T Consensus 83 d~~~~~~~~--------~~---------~~~~h----------~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~ 135 (297)
T 2pm7_B 83 KEENGRWSQ--------IA---------VHAVH----------SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT 135 (297)
T ss_dssp EBSSSCBCC--------CE---------EECCC----------SSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC
T ss_pred EcCCCceEE--------EE---------EeecC----------CCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc
Confidence 997653110 00 01112 255778888776 66777665 67899999987531
Q ss_pred --EEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCce
Q 001123 345 --LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (1149)
Q Consensus 345 --L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V 422 (1149)
...+.+|...+.++.+++.... . .+ .
T Consensus 136 ~~~~~~~~h~~~v~~~~~~p~~~~-------------------------------~-~~---------------~----- 163 (297)
T 2pm7_B 136 TSPIIIDAHAIGVNSASWAPATIE-------------------------------E-DG---------------E----- 163 (297)
T ss_dssp BCCEEEECCSSCEEEEEECCCC----------------------------------------------------------
T ss_pred eeeeeeecccCccceEeecCCccc-------------------------------c-cc---------------c-----
Confidence 2233333322222222221000 0 00 0
Q ss_pred EEEEEcCCC-cEEEEeCCCeEEEEeC-CCC----eeEeeecCCccEEEEEe--c---CCEEEEeecCcEEEEEeCCC-c-
Q 001123 423 EALTTSIDG-MIWTGGANGLLLQWDP-NGN----RLQDFQYLPFAVQCLCT--F---GSQIWVGYMNGIVQVLDLEG-N- 489 (1149)
Q Consensus 423 ~ava~s~Dg-~laSgs~DgtIrlWD~-tG~----~l~tl~gH~~~V~sls~--d---G~~LaSGs~DGtIrlWD~~G-~- 489 (1149)
-...+++ .|++|+.|++|++||+ +++ ++.++.+|...|+++++ + +++||+|+.|++|+|||++. .
T Consensus 164 --~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~ 241 (297)
T 2pm7_B 164 --HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG 241 (297)
T ss_dssp --------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred --CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC
Confidence 0001123 5899999999999999 565 67889999999999976 4 47999999999999999752 2
Q ss_pred --eeeee--eccCCCeEEEE--ecCCeEEeecCCCceeeeeccCCC
Q 001123 490 --LLGGW--VAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSPG 529 (1149)
Q Consensus 490 --~l~~l--~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~sp~ 529 (1149)
....+ .+|.+.|++++ ++|++|++++.|++|++|+....+
T Consensus 242 ~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g 287 (297)
T 2pm7_B 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (297)
T ss_dssp CCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred ccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCC
Confidence 12233 58899999998 589999999999999999976443
No 36
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=6.4e-30 Score=300.10 Aligned_cols=271 Identities=19% Similarity=0.291 Sum_probs=211.3
Q ss_pred eeEEEEEeeCCeEEEe-CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeC
Q 001123 133 CFLRTIVCTEEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (1149)
Q Consensus 133 ~~l~~l~~~~~~l~ag-~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~ 211 (1149)
..+..++.+++.+++| .|++|++||++++..... ...| .++|.|++| ++.+|+||+.
T Consensus 134 ~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h-~~~v~~l~~--~~~~l~sg~~ 191 (435)
T 1p22_A 134 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRI-------------------LTGH-TGSVLCLQY--DERVIITGSS 191 (435)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEE-------------------ECCC-SSCEEEEEC--CSSEEEEEET
T ss_pred CcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCC-CCcEEEEEE--CCCEEEEEcC
Confidence 3456677777777764 699999999987765433 1123 789999998 7899999999
Q ss_pred CCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEee
Q 001123 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVE 291 (1149)
Q Consensus 212 DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~ 291 (1149)
||+|++||+.++. ...++.+|.+.|.+++|++ +.|++||.||+|++||+.++...... .
T Consensus 192 dg~i~vwd~~~~~--------~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~-------~----- 250 (435)
T 1p22_A 192 DSTVRVWDVNTGE--------MLNTLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLR-------R----- 250 (435)
T ss_dssp TSCEEEEESSSCC--------EEEEECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEEE-------E-----
T ss_pred CCeEEEEECCCCc--------EEEEEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCceee-------e-----
Confidence 9999999999875 3778899999999999985 46899999999999999775432100 0
Q ss_pred eccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccc
Q 001123 292 RSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMED 370 (1149)
Q Consensus 292 ~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~ 370 (1149)
.+.+| ...+.++.+ ++..+++++ |++|++||+++++++.++.++..
T Consensus 251 ----~~~~~----------~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----------------- 297 (435)
T 1p22_A 251 ----VLVGH----------RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR----------------- 297 (435)
T ss_dssp ----EECCC----------SSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSS-----------------
T ss_pred ----EecCC----------CCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCC-----------------
Confidence 01112 245566666 445666654 68899999999988777654332
Q ss_pred cceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCcEEEEeCCCeEEEEeC-CC
Q 001123 371 EFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NG 449 (1149)
Q Consensus 371 ~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~laSgs~DgtIrlWD~-tG 449 (1149)
.+.++.++ +..+++|+.||+|++||+ +|
T Consensus 298 --------------------------------------------------~v~~~~~~-~~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 298 --------------------------------------------------GIACLQYR-DRLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp --------------------------------------------------CEEEEEEE-TTEEEEEETTSCEEEEETTTC
T ss_pred --------------------------------------------------cEEEEEeC-CCEEEEEeCCCeEEEEECCCC
Confidence 22233342 345899999999999999 79
Q ss_pred CeeEeeecCCccEEEEEecCCEEEEeecCcEEEEEeCC-Cc---------eeeeeeccCCCeEEEEecCCeEEeecCCCc
Q 001123 450 NRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GN---------LLGGWVAHSSPVIKMAVGAGYIFTLANHGG 519 (1149)
Q Consensus 450 ~~l~tl~gH~~~V~sls~dG~~LaSGs~DGtIrlWD~~-G~---------~l~~l~gH~~~V~sLa~Dg~~LaSgS~Dgt 519 (1149)
+++.++.+|...|.+++++|++|++|+.||+|++||+. ++ ++..+.+|.+.|.++++++++|+|+|.||+
T Consensus 327 ~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~ 406 (435)
T 1p22_A 327 ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDT 406 (435)
T ss_dssp CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSE
T ss_pred CEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCE
Confidence 99999999999999999999999999999999999964 33 789999999999999999999999999999
Q ss_pred eeeeeccCCCC
Q 001123 520 IRGWNVTSPGP 530 (1149)
Q Consensus 520 IRlWdl~sp~p 530 (1149)
|++||+....+
T Consensus 407 i~iwd~~~~~~ 417 (435)
T 1p22_A 407 ILIWDFLNDPA 417 (435)
T ss_dssp EEEEC------
T ss_pred EEEEECCCCCC
Confidence 99999976433
No 37
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=6.4e-29 Score=291.84 Aligned_cols=297 Identities=16% Similarity=0.226 Sum_probs=233.2
Q ss_pred EEEEEeeCCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCC
Q 001123 135 LRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (1149)
Q Consensus 135 l~~l~~~~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DG 213 (1149)
+..+..+++.+++ +.|++|++||+.++..... + ..| .++|.+++|+ +.+|+||+.||
T Consensus 122 ~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~-----------------~--~~h-~~~v~~~~~~--~~~l~s~~~dg 179 (445)
T 2ovr_B 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT-----------------L--VGH-TGGVWSSQMR--DNIIISGSTDR 179 (445)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCCEEEE-----------------C--CCC-SSCEEEEEEE--TTEEEEEETTS
T ss_pred EEEEEEcCCEEEEEECCCcEEEEECCCCcEEEE-----------------E--cCC-CCCEEEEEec--CCEEEEEeCCC
Confidence 4456777888876 4699999999988775543 1 123 7899999997 67999999999
Q ss_pred eEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeec
Q 001123 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (1149)
Q Consensus 214 tIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~ 293 (1149)
+|++||+.++. ...++.+|.+.|++++|++ ..|++|+.||+|++||+.+++....+..
T Consensus 180 ~i~vwd~~~~~--------~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~------------- 237 (445)
T 2ovr_B 180 TLKVWNAETGE--------CIHTLYGHTSTVRCMHLHE-KRVVSGSRDATLRVWDIETGQCLHVLMG------------- 237 (445)
T ss_dssp CEEEEETTTTE--------EEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEESSSCCEEEEEEC-------------
T ss_pred eEEEEECCcCc--------EEEEECCCCCcEEEEEecC-CEEEEEeCCCEEEEEECCCCcEEEEEcC-------------
Confidence 99999998865 4678899999999999975 3489999999999999987654433221
Q ss_pred cccccccccccceeeeecCCeEEEEEcCCCCEEEEe-cCCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccc
Q 001123 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (1149)
Q Consensus 294 ~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sa-sd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~ 372 (1149)
| ...+.++.+ ++..++++ .+++|++||+++++++.++.++...+..+.+
T Consensus 238 ------~----------~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~------------ 287 (445)
T 2ovr_B 238 ------H----------VAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF------------ 287 (445)
T ss_dssp ------C----------SSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE------------
T ss_pred ------C----------cccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE------------
Confidence 1 144566666 34555555 4788999999999999988766554332222
Q ss_pred eeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec------ccccCCCCceEEEEEcCCCcEEEEeCCCeEEEEe
Q 001123 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWD 446 (1149)
Q Consensus 373 ~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~------g~~~~~~~~V~ava~s~Dg~laSgs~DgtIrlWD 446 (1149)
++..++++..|+..++|+. ..+.+|...+.++.++ +..+++|+.||+|++||
T Consensus 288 ---------------------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~vwd 345 (445)
T 2ovr_B 288 ---------------------DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK-DNILVSGNADSTVKIWD 345 (445)
T ss_dssp ---------------------CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE-TTEEEEEETTSCEEEEE
T ss_pred ---------------------CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe-CCEEEEEeCCCeEEEEE
Confidence 2345566667776666652 2456777778877764 34689999999999999
Q ss_pred C-CCCeeEeeec---CCccEEEEEecCCEEEEeecCcEEEEEeCC-Cceeeee-----eccCCCeEEEE--ecCCeEEee
Q 001123 447 P-NGNRLQDFQY---LPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGW-----VAHSSPVIKMA--VGAGYIFTL 514 (1149)
Q Consensus 447 ~-tG~~l~tl~g---H~~~V~sls~dG~~LaSGs~DGtIrlWD~~-G~~l~~l-----~gH~~~V~sLa--~Dg~~LaSg 514 (1149)
+ +|+++.++.+ |...|.++++++++|++|+.||+|++||+. |+.+..+ .+|.+.|++++ +++.++++|
T Consensus 346 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~ 425 (445)
T 2ovr_B 346 IKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG 425 (445)
T ss_dssp TTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEE
T ss_pred CCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEc
Confidence 9 8999999987 888999999999999999999999999976 8888877 58999999998 478899999
Q ss_pred cCCCc----eeeeeccC
Q 001123 515 ANHGG----IRGWNVTS 527 (1149)
Q Consensus 515 S~Dgt----IRlWdl~s 527 (1149)
+.||+ |.+||+..
T Consensus 426 ~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 426 SRNGTEETKLLVLDFDV 442 (445)
T ss_dssp CSSSSSCCEEEEEECCC
T ss_pred ccCCCCccEEEEEECCC
Confidence 99998 99999864
No 38
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=1.4e-30 Score=300.62 Aligned_cols=284 Identities=8% Similarity=0.058 Sum_probs=208.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCC-------eEEEEECCCCCCCCCCCcc--ceEEeecCCCCEEEEEEeCCC--------
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDG-------RIMCWKMNARLLDSDDGFG--EVLSWQAHRGPVLSLCISSYG-------- 253 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DG-------tIRvWdl~~g~~~~~~~~~--~~~~l~GH~~~VtsVafSpdG-------- 253 (1149)
.-||+|++|+|||++|+||+.|. +||+|++..+.......+. ....|.+|...|.+++++++.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~ 93 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN 93 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence 35899999999999999998654 5999999765410000001 123577999999999887641
Q ss_pred -c-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-
Q 001123 254 -D-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG- 330 (1149)
Q Consensus 254 -~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas- 330 (1149)
. |++|+.|++||+|++.+....+... ... ...... .+...++++++++++..++.|+
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~------~~~----~~~~~~----------~~~~~~~~v~fSpDg~~la~as~ 153 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFL------TSV----DFDAST----------NADDYTKLVYISREGTVAAIASS 153 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEE------EEE----CSSCCC----------CTTCCEEEEEECTTSSCEEEEES
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEe------eee----ceeecC----------CcccCEEEEEEcCCCCEEEEEEC
Confidence 1 4566778999999986543221110 000 000000 1124578899999998876443
Q ss_pred --CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEE
Q 001123 331 --FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRR 408 (1149)
Q Consensus 331 --d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~r 408 (1149)
|++|+|||+.+++++..+..++.+ .++.|+|++..+++++.+.+..
T Consensus 154 ~~d~~i~iwd~~~~~~~~~~~~~~~V--------------------------------~~v~fspdg~~l~s~s~~~~~~ 201 (365)
T 4h5i_A 154 KVPAIMRIIDPSDLTEKFEIETRGEV--------------------------------KDLHFSTDGKVVAYITGSSLEV 201 (365)
T ss_dssp CSSCEEEEEETTTTEEEEEEECSSCC--------------------------------CEEEECTTSSEEEEECSSCEEE
T ss_pred CCCCEEEEeECCCCcEEEEeCCCCce--------------------------------EEEEEccCCceEEeccceeEEE
Confidence 578999999999998887644332 3456666677777777777776
Q ss_pred Eeec-------ccccCCCCceEEEEEcCCCc-EEEEeCCC----eEEEEeC-CCC----eeEeeecCCccEEEEEe--cC
Q 001123 409 VAAK-------GGFGDDNRRTEALTTSIDGM-IWTGGANG----LLLQWDP-NGN----RLQDFQYLPFAVQCLCT--FG 469 (1149)
Q Consensus 409 v~~~-------g~~~~~~~~V~ava~s~Dg~-laSgs~Dg----tIrlWD~-tG~----~l~tl~gH~~~V~sls~--dG 469 (1149)
++.. .....|...+.+++|+|||. +++++.|+ ++++||+ .+. ....+.+|...|+++++ ||
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg 281 (365)
T 4h5i_A 202 ISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKG 281 (365)
T ss_dssp EETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTS
T ss_pred EEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCC
Confidence 6641 13456777899999999987 77888887 6899998 443 24678899999999865 79
Q ss_pred CEEEEeecCcEEEEEeCC-Cceeee-eeccCCCeEEEE--ecCCeEEeecCCCceeeeecc
Q 001123 470 SQIWVGYMNGIVQVLDLE-GNLLGG-WVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 470 ~~LaSGs~DGtIrlWD~~-G~~l~~-l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
++||+|+.|++|+|||++ ++++.. +.||.++|++|+ +||++|+|||.|+|||||++.
T Consensus 282 ~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 282 ELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred CceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 999999999999999986 888876 589999999998 599999999999999999984
No 39
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.97 E-value=9.2e-29 Score=283.63 Aligned_cols=273 Identities=15% Similarity=0.176 Sum_probs=207.3
Q ss_pred cceeEEEEEee--CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEE
Q 001123 131 IGCFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVW 207 (1149)
Q Consensus 131 ~~~~l~~l~~~--~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~La 207 (1149)
+...+.+++.. ...|++ +.|++|+|||..++..... ...+ ...|.+++|+|+|..|+
T Consensus 63 H~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~-~~~v~~~~~sp~g~~la 122 (354)
T 2pbi_B 63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMP-CTWVMACAYAPSGCAIA 122 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-------------------EECS-SSCCCEEEECTTSSEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceE-------------------EecC-CCCEEEEEECCCCCEEE
Confidence 44456666665 445555 5699999999876654332 1123 67899999999999999
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceee
Q 001123 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (1149)
Q Consensus 208 SGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~ 286 (1149)
+|+.|++|++|++..... .........+.+|.+.|.+++|+|++. |+|||.|++||+||+++++....+..
T Consensus 123 sg~~d~~i~v~~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~------ 194 (354)
T 2pbi_B 123 CGGLDNKCSVYPLTFDKN--ENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG------ 194 (354)
T ss_dssp EESTTSEEEEEECCCCTT--CCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC------
T ss_pred EeeCCCCEEEEEEecccc--ccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcC------
Confidence 999999999999875431 112234567889999999999999986 89999999999999988765433322
Q ss_pred EEEeeeccccccccccccceeeeecCCeEEEEEcC--CCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccC
Q 001123 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH--SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLL 363 (1149)
Q Consensus 287 a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~--~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~ 363 (1149)
|. ..+.++.+.+ ++..+++++ |++|++||+++++++.++.+|...+..+
T Consensus 195 -------------h~----------~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v----- 246 (354)
T 2pbi_B 195 -------------HG----------ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSV----- 246 (354)
T ss_dssp -------------CS----------SCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE-----
T ss_pred -------------CC----------CCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEE-----
Confidence 21 4455666544 456777765 7889999999999999887766554433
Q ss_pred CCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecc------ccc--CCCCceEEEEEcCCCc-EE
Q 001123 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG------GFG--DDNRRTEALTTSIDGM-IW 434 (1149)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g------~~~--~~~~~V~ava~s~Dg~-la 434 (1149)
.|.|++..+++++.|+..++|+.. .+. .+...+.+++++|+|. ++
T Consensus 247 --------------------------~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~ 300 (354)
T 2pbi_B 247 --------------------------RYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLF 300 (354)
T ss_dssp --------------------------EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEE
T ss_pred --------------------------EEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEE
Confidence 444555566777777777777521 122 2234678899999987 78
Q ss_pred EEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEe
Q 001123 435 TGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (1149)
Q Consensus 435 Sgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD 485 (1149)
+|+.|++|++||+ +|+++..+.+|...|.++++ +|++|++|+.||+|+||+
T Consensus 301 ~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 301 AGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999999 89999999999999999976 799999999999999997
No 40
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-28 Score=276.71 Aligned_cols=280 Identities=12% Similarity=0.088 Sum_probs=224.5
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
.++|.|++|+|+|++|++|+.||.|++||+.++. ....+.+|.+.|++++|+|+++ |++|+.|++|++||+
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~--------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE--------RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC--------EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch--------hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 8899999999999999999999999999998765 4778899999999999999997 899999999999999
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecC------CceEEEEcCCcc
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF------LSFALWDARTRE 343 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd------~tIrLWD~~TG~ 343 (1149)
.+++....+. ....+.++++++++..+++++. +.|++||+.++.
T Consensus 104 ~~~~~~~~~~------------------------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~ 153 (369)
T 3zwl_B 104 SNGQCVATWK------------------------------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDS 153 (369)
T ss_dssp TTCCEEEEEE------------------------------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECT
T ss_pred CCCcEEEEee------------------------------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCc
Confidence 8765433221 1245677888888888877654 689999998765
Q ss_pred EEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecc-------ccc
Q 001123 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG-------GFG 416 (1149)
Q Consensus 344 ~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g-------~~~ 416 (1149)
....+...... ....+........+..+.|.+++..++++..++..++++.. .+.
T Consensus 154 ~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 215 (369)
T 3zwl_B 154 ATHELTKVSEE------------------PIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID 215 (369)
T ss_dssp TTCCEEEECSS------------------CSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE
T ss_pred cceeecccccc------------------eeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe
Confidence 33222110000 00011112222255677888888889999999988887632 355
Q ss_pred CCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCc-------------
Q 001123 417 DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNG------------- 479 (1149)
Q Consensus 417 ~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DG------------- 479 (1149)
.|...|.+++++|++. |++++.|++|++||+ +++++..+. +...+.++++ +|+++++|+.++
T Consensus 216 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 294 (369)
T 3zwl_B 216 LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGK 294 (369)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------
T ss_pred cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCc
Confidence 6788999999999987 789999999999999 788888887 6778888865 699999999998
Q ss_pred -EEEEEeCC-CceeeeeeccCCCeEEEE--ecCCeEEeecCCCceeeeeccC
Q 001123 480 -IVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 480 -tIrlWD~~-G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
.|++||.. ++++..+.+|.+.|.+++ +++++|+|++.|++|++|++..
T Consensus 295 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 295 FEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred ceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 89999975 889999999999999998 4899999999999999999864
No 41
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=5.2e-29 Score=275.64 Aligned_cols=273 Identities=15% Similarity=0.151 Sum_probs=200.6
Q ss_pred EEee-CCeEEEeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCCEEEEEeCCCeE
Q 001123 138 IVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRDGRI 215 (1149)
Q Consensus 138 l~~~-~~~l~ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~~LaSGS~DGtI 215 (1149)
|+-. ++.|.+|.|++|||||++++..... +. +++ ...|.|++|+|+|++|+||+.||+|
T Consensus 31 l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~-----------------~~--~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v 91 (318)
T 4ggc_A 31 VDWSSGNVLAVALDNSVYLWSASSGDILQL-----------------LQ--MEQPGEYISSVAWIKEGNYLAVGTSSAEV 91 (318)
T ss_dssp EEECTTSEEEEEETTEEEEEETTTCCEEEE-----------------EE--CCSTTCCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEECCCCEEEEEeCCEEEEEECCCCCEEEE-----------------EE--ecCCCCeEEEEEECCCCCEEEEEECCCcE
Confidence 3444 3445557899999999998876543 11 233 6789999999999999999999999
Q ss_pred EEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccc
Q 001123 216 MCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (1149)
Q Consensus 216 RvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~ 295 (1149)
++|+++++. .+..+.+|...+.++.+.+. .|++|+.|+.+++|+..+.......
T Consensus 92 ~iw~~~~~~--------~~~~~~~h~~~~~~~~~~~~-~l~s~~~~~~~~~~~~~~~~~~~~~----------------- 145 (318)
T 4ggc_A 92 QLWDVQQQK--------RLRNMTSHSARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAEHHVAT----------------- 145 (318)
T ss_dssp EEEETTTTE--------EEEEEECCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSSCEEEE-----------------
T ss_pred EEeecCCce--------eEEEecCccceEEEeecCCC-EEEEEecCCceEeeecCCCceeEEE-----------------
Confidence 999999875 47788999999987766542 3789999999999998764322110
Q ss_pred cccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCcccccccee
Q 001123 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKT 374 (1149)
Q Consensus 296 ~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~ 374 (1149)
+.+| ...+..+++.+.+..+++++ |++|++||+++++......
T Consensus 146 -~~~~----------~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------------------------- 189 (318)
T 4ggc_A 146 -LSGH----------SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL------------------------- 189 (318)
T ss_dssp -EECC----------SSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS-------------------------
T ss_pred -EcCc----------cCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce-------------------------
Confidence 0112 24566677778888887765 6789999998765211000
Q ss_pred eEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc----EEEEeCCCeEEEEeC-CC
Q 001123 375 KIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM----IWTGGANGLLLQWDP-NG 449 (1149)
Q Consensus 375 ~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~----laSgs~DgtIrlWD~-tG 449 (1149)
. ....+...|.++++++++. +++|+.+++|++||. .+
T Consensus 190 --~------------------------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~ 231 (318)
T 4ggc_A 190 --Q------------------------------------TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG 231 (318)
T ss_dssp --E------------------------------------EECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC
T ss_pred --e------------------------------------eecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc
Confidence 0 0112223445555665542 346778999999999 45
Q ss_pred CeeEeeecCCccEEEEEe--cCCEEEEe--ecCcEEEEEeCC-CceeeeeeccCCCeEEEE--ecCCeEEeecCCCceee
Q 001123 450 NRLQDFQYLPFAVQCLCT--FGSQIWVG--YMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRG 522 (1149)
Q Consensus 450 ~~l~tl~gH~~~V~sls~--dG~~LaSG--s~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRl 522 (1149)
..... ..|...|.++.+ +++.++++ +.|++|+|||+. ++++.++.||.+.|++|+ +||++|+|||.|++||+
T Consensus 232 ~~~~~-~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~i 310 (318)
T 4ggc_A 232 ACLSA-VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 310 (318)
T ss_dssp CEEEE-EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEE
T ss_pred ccccc-ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Confidence 55544 455667776654 57777654 489999999976 899999999999999998 58999999999999999
Q ss_pred eeccCCCC
Q 001123 523 WNVTSPGP 530 (1149)
Q Consensus 523 Wdl~sp~p 530 (1149)
||+...+|
T Consensus 311 Wd~~~~dP 318 (318)
T 4ggc_A 311 WRCFELDP 318 (318)
T ss_dssp ECCSCCCC
T ss_pred EECCCCCC
Confidence 99987665
No 42
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=9.3e-30 Score=286.76 Aligned_cols=252 Identities=13% Similarity=0.064 Sum_probs=180.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCC--Cc-EEEEECCCcEEEE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIW 267 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpd--G~-L~SGS~DgTIRVW 267 (1149)
.++|.+++|+++|++||||+.|++||+||+.++.. ....++.||.++|++|+|+++ |+ |+|||.|++||+|
T Consensus 13 ~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~------~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 13 EDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ------ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE------EEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred cCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc------EEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 78999999999999999999999999999986531 235678999999999999863 55 8999999999999
Q ss_pred eCCCcc--eeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCC--CCEEEEec-CCceEEEEcCCc
Q 001123 268 PWEAIE--KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTR 342 (1149)
Q Consensus 268 dl~t~~--~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~--~~~v~Sas-d~tIrLWD~~TG 342 (1149)
|++++. ....+ .+|. ..+.+++++++ +..+++++ |++|++||++++
T Consensus 87 d~~~~~~~~~~~~-------------------~~h~----------~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~ 137 (316)
T 3bg1_A 87 REENGTWEKSHEH-------------------AGHD----------SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE 137 (316)
T ss_dssp CCSSSCCCEEEEE-------------------CCCS----------SCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred ECCCCcceEEEEc-------------------cCCC----------CceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence 997653 11111 1222 45777888776 56777765 678999999876
Q ss_pred cEE---EEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCC
Q 001123 343 ELL---KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (1149)
Q Consensus 343 ~~L---~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~ 419 (1149)
... ..+.+|... +..+.|.++.. .+. +..+.
T Consensus 138 ~~~~~~~~~~~h~~~-------------------------------v~~~~~~~~~~---~~~------------~~~~~ 171 (316)
T 3bg1_A 138 GQWEVKKINNAHTIG-------------------------------CNAVSWAPAVV---PGS------------LIDHP 171 (316)
T ss_dssp SCEEECCBTTSSSSC-------------------------------BCCCEECCCCC---C------------------C
T ss_pred CCcceeeeeccccCC-------------------------------cceEEEccccC---Ccc------------ccccc
Confidence 322 111222211 11222222210 000 00000
Q ss_pred CceEEEEEcCC-CcEEEEeCCCeEEEEeCC-C---CeeEeeecCCccEEEEEe--cC----CEEEEeecCcEEEEEeCCC
Q 001123 420 RRTEALTTSID-GMIWTGGANGLLLQWDPN-G---NRLQDFQYLPFAVQCLCT--FG----SQIWVGYMNGIVQVLDLEG 488 (1149)
Q Consensus 420 ~~V~ava~s~D-g~laSgs~DgtIrlWD~t-G---~~l~tl~gH~~~V~sls~--dG----~~LaSGs~DGtIrlWD~~G 488 (1149)
.. ....+ ..+++|+.|++|++||+. + +++.++.+|...|+++++ ++ ++||+|+.||+|+|||++.
T Consensus 172 ~~----~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 172 SG----QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp CS----CCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cc----cCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 00 01112 358999999999999994 4 478899999999999976 44 7999999999999999753
Q ss_pred ----c-eeeeeeccCCCeEEEE--ecCCeEEeecCCCceeeeeccC
Q 001123 489 ----N-LLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 489 ----~-~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
+ ....+.+|.+.|++++ +++++|++++.|++||+|+...
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 1 2355678999999998 5899999999999999999753
No 43
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=4.9e-29 Score=291.49 Aligned_cols=271 Identities=15% Similarity=0.166 Sum_probs=205.8
Q ss_pred CCeEEEeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001123 142 EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (1149)
Q Consensus 142 ~~~l~ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~~LaSGS~DGtIRvWdl 220 (1149)
.+.|.+|.|++|+|||+++|..... + .+++ ...|.||+|+|+|++||||+.||+|++||+
T Consensus 116 ~n~lAvgld~tV~lWd~~tg~~~~~-----------------~--~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~ 176 (420)
T 4gga_A 116 GNVLAVALDNSVYLWSASSGDILQL-----------------L--QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 176 (420)
T ss_dssp TSEEEEEETTEEEEEETTTCCEEEE-----------------E--ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCEEEEEeCCEEEEEECCCCCEEEE-----------------E--EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEc
Confidence 4455557899999999998876543 1 1233 678999999999999999999999999999
Q ss_pred CCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeecccccccc
Q 001123 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSH 300 (1149)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~ 300 (1149)
.++. .+..+.+|...|.++++++. .|++|+.|++|++||......... . +.+|
T Consensus 177 ~~~~--------~~~~~~~h~~~v~~~s~~~~-~l~sgs~d~~i~~~d~~~~~~~~~---------~---------~~~h 229 (420)
T 4gga_A 177 QQQK--------RLRNMTSHSARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAEHHVA---------T---------LSGH 229 (420)
T ss_dssp TTTE--------EEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSSCEEE---------E---------EECC
T ss_pred CCCc--------EEEEEeCCCCceEEEeeCCC-EEEEEeCCCceeEeeecccceeeE---------E---------eccc
Confidence 9865 47789999999999887642 378999999999999865332110 0 1112
Q ss_pred ccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEec
Q 001123 301 LSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTS 379 (1149)
Q Consensus 301 ~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~ 379 (1149)
...+..+...+++..+++++ |+.+++||..+++.... .
T Consensus 230 ----------~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~------~------------------------- 268 (420)
T 4gga_A 230 ----------SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV------P------------------------- 268 (420)
T ss_dssp ----------SSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC------C-------------------------
T ss_pred ----------ccceeeeeecCCCCeeeeeeccccceEEeeccccccce------e-------------------------
Confidence 24566777888888888765 67899999886542100 0
Q ss_pred CCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc--EEE--EeCCCeEEEEeC-CCCeeEe
Q 001123 380 SKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWT--GGANGLLLQWDP-NGNRLQD 454 (1149)
Q Consensus 380 ~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~--laS--gs~DgtIrlWD~-tG~~l~t 454 (1149)
...+..|...|.+++++|++. +++ |+.|++|++||+ +|+++..
T Consensus 269 --------------------------------~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~ 316 (420)
T 4gga_A 269 --------------------------------LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 316 (420)
T ss_dssp --------------------------------SEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE
T ss_pred --------------------------------eeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee
Confidence 000223445677778887653 443 567999999999 8999999
Q ss_pred eecCCccEEEEE--ecCCEEEEee--cCcEEEEEeCC-CceeeeeeccCCCeEEEE--ecCCeEEeecCCCceeeeeccC
Q 001123 455 FQYLPFAVQCLC--TFGSQIWVGY--MNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 455 l~gH~~~V~sls--~dG~~LaSGs--~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
+..|. .|.++. ++++.|++++ .|++|+|||+. ++++.+|.||.+.|++|+ +||++|+|||.|++||+||+..
T Consensus 317 ~~~~~-~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 317 VDAHS-QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp EECSS-CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred ecccc-ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 88775 555554 4688887755 79999999975 899999999999999998 5999999999999999999987
Q ss_pred CCCCc
Q 001123 528 PGPLD 532 (1149)
Q Consensus 528 p~pld 532 (1149)
..|..
T Consensus 396 ~~~~~ 400 (420)
T 4gga_A 396 LDPAR 400 (420)
T ss_dssp SSCC-
T ss_pred CCccc
Confidence 66654
No 44
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=1.2e-29 Score=285.36 Aligned_cols=307 Identities=12% Similarity=0.128 Sum_probs=223.3
Q ss_pred cceeEEEEEee------CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCC-
Q 001123 131 IGCFLRTIVCT------EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA- 202 (1149)
Q Consensus 131 ~~~~l~~l~~~------~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~d- 202 (1149)
+...+..++.+ ...+++ +.++.|+|||+.++.....+ ..+....+ ...|.+++|+|+
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~--------------~~~~~~~~-~~~v~~~~~~~~~ 81 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLL--------------QSYVDADA-DENFYTCAWTYDS 81 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEE--------------EEEECSCT-TCCEEEEEEEECT
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEee--------------eeccccCC-CCcEEEEEeccCC
Confidence 44567777776 334555 56889999999877654330 00111112 478999999999
Q ss_pred ---CCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeC-CCc-EEEEECCCcEEEEeCCCcceeee
Q 001123 203 ---SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGIKIWPWEAIEKALS 277 (1149)
Q Consensus 203 ---g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSp-dG~-L~SGS~DgTIRVWdl~t~~~~~~ 277 (1149)
|.+|++|+.||+|++||+.++. ....+.+|.++|++++|+| ++. |++|+.||+|++||+.+++....
T Consensus 82 ~~~~~~l~~~~~dg~i~v~d~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 153 (366)
T 3k26_A 82 NTSHPLLAVAGSRGIIRIINPITMQ--------CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI 153 (366)
T ss_dssp TTCCEEEEEEETTCEEEEECTTTCC--------EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CCCCCEEEEecCCCEEEEEEchhce--------EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEE
Confidence 6799999999999999998765 3677899999999999999 777 79999999999999987654433
Q ss_pred cCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceee
Q 001123 278 LKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIEN 356 (1149)
Q Consensus 278 l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~ 356 (1149)
+.. +.+| ...+.++++++++..+++++ +++|++||+++++++..+....
T Consensus 154 ~~~----------------~~~~----------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---- 203 (366)
T 3k26_A 154 FGG----------------VEGH----------RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESY---- 203 (366)
T ss_dssp ECS----------------TTSC----------SSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHH----
T ss_pred ecc----------------cccc----------cCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeE----
Confidence 311 0112 25678888988888888775 6789999999887655443211
Q ss_pred EEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCcEEEE
Q 001123 357 RVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG 436 (1149)
Q Consensus 357 ~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~laSg 436 (1149)
.+++........ . .... ......+..|...|.++.++ +..++++
T Consensus 204 --~~~~~~~~~~~~-----------------~----------~~~~------~~~~~~~~~~~~~v~~~~~~-~~~l~~~ 247 (366)
T 3k26_A 204 --DYNPNKTNRPFI-----------------S----------QKIH------FPDFSTRDIHRNYVDCVRWL-GDLILSK 247 (366)
T ss_dssp --TCCGGGCSSCCC-----------------C----------EEEC------CCSEEECSSCSSCCCEEEEE-TTEEEEE
T ss_pred --EecCCCCccccc-----------------c----------eeec------cCccccccCCcceEEEEEEc-CCEEEEE
Confidence 011111000000 0 0000 00011244577788899988 5578999
Q ss_pred eCCCeEEEEeC-CCCe--------------eEeeecCCccEEEE--Eec--CCEEEEeecCcEEEEEeCC-Cc----eee
Q 001123 437 GANGLLLQWDP-NGNR--------------LQDFQYLPFAVQCL--CTF--GSQIWVGYMNGIVQVLDLE-GN----LLG 492 (1149)
Q Consensus 437 s~DgtIrlWD~-tG~~--------------l~tl~gH~~~V~sl--s~d--G~~LaSGs~DGtIrlWD~~-G~----~l~ 492 (1149)
+.|++|++||+ ++++ +..+.+|...|+++ +++ |++|++|+.||.|++||+. ++ .+.
T Consensus 248 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 327 (366)
T 3k26_A 248 SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCT 327 (366)
T ss_dssp CSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEE
T ss_pred ecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccce
Confidence 99999999998 5543 78889999999877 457 9999999999999999986 44 445
Q ss_pred eeecc--CCCeEEEE--ecCCeEEeecCCCceeeeecc
Q 001123 493 GWVAH--SSPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 493 ~l~gH--~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
.+.+| .+.|.+++ +++++|++++.|++|++||+.
T Consensus 328 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 328 TLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 88888 79999998 589999999999999999974
No 45
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.97 E-value=5.4e-29 Score=278.71 Aligned_cols=236 Identities=10% Similarity=0.094 Sum_probs=191.1
Q ss_pred cceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeee
Q 001123 232 GEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSIL 310 (1149)
Q Consensus 232 ~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~ 310 (1149)
....+|+||.+.|++|+|+|+|+ |+||+.||+|||||++++.....+.. |
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~-------------------~---------- 54 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQV-------------------T---------- 54 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC-------------------C----------
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeec-------------------c----------
Confidence 34678999999999999999998 89999999999999987654332211 1
Q ss_pred cCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceee
Q 001123 311 TSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSF 389 (1149)
Q Consensus 311 ~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si 389 (1149)
...+.++.+.+++..+++++ |++|++||+.+++++..+.+|...+.++
T Consensus 55 ~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~------------------------------- 103 (304)
T 2ynn_A 55 ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI------------------------------- 103 (304)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE-------------------------------
T ss_pred CCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEE-------------------------------
Confidence 14567777888888888765 6789999999999999988776654433
Q ss_pred eeeccccceEeecCCcEEEEeec-------ccccCCCCceEEEEEcC-CCc-EEEEeCCCeEEEEeC-CCCeeEeee-cC
Q 001123 390 GFFQRSRNAIMGAADAVRRVAAK-------GGFGDDNRRTEALTTSI-DGM-IWTGGANGLLLQWDP-NGNRLQDFQ-YL 458 (1149)
Q Consensus 390 ~f~~~~~~~i~G~~d~v~rv~~~-------g~~~~~~~~V~ava~s~-Dg~-laSgs~DgtIrlWD~-tG~~l~tl~-gH 458 (1149)
.|.+++..+++|+.|+..++|+. ..+.+|...|.+++++| ++. +++|+.|++|++||+ ++.+...+. +|
T Consensus 104 ~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~ 183 (304)
T 2ynn_A 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183 (304)
T ss_dssp EECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCC
T ss_pred EEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCC
Confidence 44455556677777877777752 24678899999999998 554 899999999999999 666665554 56
Q ss_pred CccEEEEEe----cCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEEEE--ecCCeEEeecCCCceeeeeccC
Q 001123 459 PFAVQCLCT----FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 459 ~~~V~sls~----dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
...|..+.+ ++++|++|+.||+|++||+. ++++..+.+|...|.+++ +++.+|+|||.|++||+||+.+
T Consensus 184 ~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~ 259 (304)
T 2ynn_A 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (304)
T ss_dssp TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 678888765 57899999999999999976 889999999999999988 5888999999999999999765
No 46
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=1.6e-28 Score=306.18 Aligned_cols=277 Identities=18% Similarity=0.271 Sum_probs=204.6
Q ss_pred cceeEEEEEee--C-CeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCCE
Q 001123 131 IGCFLRTIVCT--E-EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGV 205 (1149)
Q Consensus 131 ~~~~l~~l~~~--~-~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~~ 205 (1149)
+...++.|+.. . +.|.+ +.|++||+||+.+...... .....+.| ...|.|++|+|+|++
T Consensus 381 H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~----------------~~~~~~~~h~~~v~~v~~s~~g~~ 444 (694)
T 3dm0_A 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG----------------VAQRRLTGHSHFVEDVVLSSDGQF 444 (694)
T ss_dssp CSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC----------------EEEEEEECCSSCEEEEEECTTSSE
T ss_pred CCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc----------------cccceecCCCCcEEEEEECCCCCE
Confidence 34456666665 2 34554 5699999999875432210 01112334 889999999999999
Q ss_pred EEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcce
Q 001123 206 VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERH 284 (1149)
Q Consensus 206 LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~ 284 (1149)
|+||+.||+||+||+.++. ....+.+|.+.|++++|+|+++ |+|||.|++|||||+...... .+..
T Consensus 445 l~sgs~Dg~v~vwd~~~~~--------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~-~~~~---- 511 (694)
T 3dm0_A 445 ALSGSWDGELRLWDLAAGV--------STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKY-TISE---- 511 (694)
T ss_dssp EEEEETTSEEEEEETTTTE--------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE-EECS----
T ss_pred EEEEeCCCcEEEEECCCCc--------ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcce-eecc----
Confidence 9999999999999998865 3678899999999999999997 899999999999998543211 1100
Q ss_pred eeEEEeeeccccccccccccceeeeecCCeEEEEEcCCC--CEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeec
Q 001123 285 TAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR--AKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMS 361 (1149)
Q Consensus 285 ~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~--~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S 361 (1149)
...+| ...+.++++++++ ..+++++ |++|++||++++++..++.
T Consensus 512 -----------~~~~h----------~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~------------ 558 (694)
T 3dm0_A 512 -----------GGEGH----------RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA------------ 558 (694)
T ss_dssp -----------STTSC----------SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC------------
T ss_pred -----------CCCCC----------CCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc------------
Confidence 00112 2457788887765 3566654 7899999998876655443
Q ss_pred cCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEeCCC
Q 001123 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANG 440 (1149)
Q Consensus 362 ~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs~Dg 440 (1149)
+|...|.+++++|+|. |++|+.||
T Consensus 559 -------------------------------------------------------~h~~~v~~v~~spdg~~l~sg~~Dg 583 (694)
T 3dm0_A 559 -------------------------------------------------------GHTGYVSTVAVSPDGSLCASGGKDG 583 (694)
T ss_dssp -------------------------------------------------------CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred -------------------------------------------------------CCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 3445567788999986 78999999
Q ss_pred eEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-CceeeeeeccC------------------
Q 001123 441 LLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS------------------ 498 (1149)
Q Consensus 441 tIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~------------------ 498 (1149)
+|++||+ +|+++..+..+ ..|.++++ ++.+|++++ |+.|+|||++ ++++..+..|.
T Consensus 584 ~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (694)
T 3dm0_A 584 VVLLWDLAEGKKLYSLEAN-SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRK 661 (694)
T ss_dssp BCEEEETTTTEEEECCBCS-SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------C
T ss_pred eEEEEECCCCceEEEecCC-CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCce
Confidence 9999999 78988888654 67888876 567776665 5669999987 66666665432
Q ss_pred -CCeEEEE--ecCCeEEeecCCCceeeeecc
Q 001123 499 -SPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 499 -~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
-.|.+++ +||++|+|||.||+||+|++.
T Consensus 662 ~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 662 VIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 2366776 699999999999999999975
No 47
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.8e-30 Score=310.58 Aligned_cols=304 Identities=10% Similarity=-0.033 Sum_probs=202.3
Q ss_pred eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCC------CCEEEEEeCCCeEEEEEC
Q 001123 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEA------SGVVWSGHRDGRIMCWKM 220 (1149)
Q Consensus 148 g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~d------g~~LaSGS~DGtIRvWdl 220 (1149)
+.|++|||||+.++..... ....+.+ .+.|.+|+|+|+ +.+||||+.||+||+||+
T Consensus 180 s~D~tI~iWd~~~~~~~~~-----------------~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~ 242 (524)
T 2j04_B 180 KHSSCIQIFKMNTSTLHCV-----------------KVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEI 242 (524)
T ss_dssp --CEEEEEEEEETTTCCEE-----------------EEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEEC
T ss_pred CCCceEEEEEccCCCCCce-----------------EEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEc
Confidence 4599999999876543211 0111222 678999999996 579999999999999999
Q ss_pred CCCCCCCC---CCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccc
Q 001123 221 NARLLDSD---DGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (1149)
Q Consensus 221 ~~g~~~~~---~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l 297 (1149)
.++.+... ....+..++.+|.++|++++|++++.|+|||.||+|++||++++..... .+
T Consensus 243 ~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~------------------~~ 304 (524)
T 2j04_B 243 IDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSF------------------YD 304 (524)
T ss_dssp CCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSE------------------EE
T ss_pred CCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceE------------------Ee
Confidence 87642100 0112345789999999999999987799999999999999976432110 01
Q ss_pred cccccccceeeeecCCeEEE--EEcCCC-CEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccce
Q 001123 298 RSHLSVNGFSSILTSDIKNL--LSDHSR-AKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFK 373 (1149)
Q Consensus 298 ~~~~~~~g~~~~~~~dv~~l--as~~~~-~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~ 373 (1149)
.+|. ..|.++ ++++++ ..++|++ |++|+|||+++++++.++.++...
T Consensus 305 ~~H~----------~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~------------------- 355 (524)
T 2j04_B 305 QVHD----------SYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG------------------- 355 (524)
T ss_dssp ECSS----------SCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC-------------------
T ss_pred eccc----------ccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc-------------------
Confidence 1222 556666 456665 6777765 689999999998877666543210
Q ss_pred eeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec------ccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEe
Q 001123 374 TKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWD 446 (1149)
Q Consensus 374 ~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~------g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD 446 (1149)
..+.++.|.|++..+++++.+...++|+. ..+.+|...|.+|+++|+|. |+||+.||+|++||
T Consensus 356 ----------~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 356 ----------SNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITN 425 (524)
T ss_dssp ----------CSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred ----------CcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence 01234567776666777777777777752 23567889999999999987 89999999999999
Q ss_pred CCCCeeEeeecC-----CccEEEEEe--cCCEEEEeecCcEEEEEeCCCceeeeeeccCCCeEEEEe--c---CCeEEee
Q 001123 447 PNGNRLQDFQYL-----PFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAV--G---AGYIFTL 514 (1149)
Q Consensus 447 ~tG~~l~tl~gH-----~~~V~sls~--dG~~LaSGs~DGtIrlWD~~G~~l~~l~gH~~~V~sLa~--D---g~~LaSg 514 (1149)
+.+.+++.+..+ ...|.++++ +|+.+ ....+..+..|+.+|.++..+.+|.++|.+|++ + +.++++|
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~-~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg 504 (524)
T 2j04_B 426 AARRLLHGIKNSSATQKSLRLWKWDYSIKDDKY-RIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFS 504 (524)
T ss_dssp SCSSTTTCC------CCCCEEEECBCCSSSCEE-EECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEE
T ss_pred chHhhccccccCccceeeeEEEEeccCCCCCeE-EccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhh
Confidence 965555443321 124666654 56644 222222233333458889999999999999994 4 3489999
Q ss_pred cCCCceeeeecc
Q 001123 515 ANHGGIRGWNVT 526 (1149)
Q Consensus 515 S~DgtIRlWdl~ 526 (1149)
+.||+||||++.
T Consensus 505 ~~~g~vrlw~l~ 516 (524)
T 2j04_B 505 NSAGLLTLEYLS 516 (524)
T ss_dssp CTTSEEEEEECS
T ss_pred ccCceEEEEEcc
Confidence 999999999975
No 48
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.97 E-value=8.8e-28 Score=267.09 Aligned_cols=275 Identities=15% Similarity=0.181 Sum_probs=213.0
Q ss_pred cceeEEEEEee--CCeEEEeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCCEEE
Q 001123 131 IGCFLRTIVCT--EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVW 207 (1149)
Q Consensus 131 ~~~~l~~l~~~--~~~l~ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~~La 207 (1149)
+...+..++.. ...++++.|+.|++||+.++..... .......+ ..+|.+++|+|++++|+
T Consensus 50 h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~----------------~~~~~~~~~~~~v~~~~~~~~~~~l~ 113 (337)
T 1gxr_A 50 HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSP----------------VSQLDCLNRDNYIRSCKLLPDGCTLI 113 (337)
T ss_dssp CSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSC----------------SEEEECSCTTSBEEEEEECTTSSEEE
T ss_pred CCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceee----------------eecccccCCCCcEEEEEEcCCCCEEE
Confidence 34445555554 5566667799999999987654332 00011112 67899999999999999
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceee
Q 001123 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (1149)
Q Consensus 208 SGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~ 286 (1149)
+|+.||+|++||+.++.. .....+.+|.+.|++++|+|+++ |++|+.|++|++||+.+++....+..
T Consensus 114 ~~~~d~~i~~~d~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~------ 181 (337)
T 1gxr_A 114 VGGEASTLSIWDLAAPTP------RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG------ 181 (337)
T ss_dssp EEESSSEEEEEECCCC--------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC------
T ss_pred EEcCCCcEEEEECCCCCc------ceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeec------
Confidence 999999999999987541 23567889999999999999997 78999999999999987654333221
Q ss_pred EEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCC
Q 001123 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (1149)
Q Consensus 287 a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~ 365 (1149)
| ...+.++++++++..+++++ +++|++||+++++++..+..
T Consensus 182 -------------~----------~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--------------- 223 (337)
T 1gxr_A 182 -------------H----------TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF--------------- 223 (337)
T ss_dssp -------------C----------SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC---------------
T ss_pred -------------c----------cCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC---------------
Confidence 1 24577788888888888765 67899999998876654421
Q ss_pred ccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEeCCCeEEE
Q 001123 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQ 444 (1149)
Q Consensus 366 ~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrl 444 (1149)
...+.+++++|++. +++++.|+.|++
T Consensus 224 -----------------------------------------------------~~~v~~~~~s~~~~~l~~~~~~~~i~~ 250 (337)
T 1gxr_A 224 -----------------------------------------------------TSQIFSLGYCPTGEWLAVGMESSNVEV 250 (337)
T ss_dssp -----------------------------------------------------SSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred -----------------------------------------------------CCceEEEEECCCCCEEEEEcCCCcEEE
Confidence 12244567888876 789999999999
Q ss_pred EeCCCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEEEE--ecCCeEEeecCCCc
Q 001123 445 WDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGG 519 (1149)
Q Consensus 445 WD~tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~Dgt 519 (1149)
||+....+..+..|...|.++++ +|++|++|+.||+|++||++ ++.+ ....|...|.+++ +++++|++++.|++
T Consensus 251 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 329 (337)
T 1gxr_A 251 LHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI-FQSKESSSVLSCDISVDDKYIVTGSGDKK 329 (337)
T ss_dssp EETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-EEEECSSCEEEEEECTTSCEEEEEETTSC
T ss_pred EECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE-EEecCCCcEEEEEECCCCCEEEEecCCCe
Confidence 99954445678889999999976 69999999999999999987 5655 4457899999988 58999999999999
Q ss_pred eeeeec
Q 001123 520 IRGWNV 525 (1149)
Q Consensus 520 IRlWdl 525 (1149)
|++|++
T Consensus 330 i~iw~~ 335 (337)
T 1gxr_A 330 ATVYEV 335 (337)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999996
No 49
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=5.6e-29 Score=279.51 Aligned_cols=279 Identities=14% Similarity=0.120 Sum_probs=207.3
Q ss_pred cceeEEEEEee--CCeEEE-eC----CCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCC-
Q 001123 131 IGCFLRTIVCT--EEQLWA-GG----ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA- 202 (1149)
Q Consensus 131 ~~~~l~~l~~~--~~~l~a-g~----D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~d- 202 (1149)
+...+..++.. +..+++ |+ |++|+|||+.++..... ....| ..+|.|++|+|+
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~------------------~~~~~-~~~v~~~~~~~~~ 77 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL------------------REIEK-AKPIKCGTFGATS 77 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE------------------EEEEE-SSCEEEEECTTCC
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce------------------eeecc-cCcEEEEEEcCCC
Confidence 44567777776 345655 42 89999999987654321 11123 789999999999
Q ss_pred --CCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEE------EeCCCc-EEEEECCCcEEEEeCCCcc
Q 001123 203 --SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLC------ISSYGD-LWSGSEGGGIKIWPWEAIE 273 (1149)
Q Consensus 203 --g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVa------fSpdG~-L~SGS~DgTIRVWdl~t~~ 273 (1149)
|.+|++|+.||+|++||+.++. .....+.+|.+.|+++. |+|++. |++|+.|++|++||+.+++
T Consensus 78 ~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~ 150 (357)
T 3i2n_A 78 LQQRYLATGDFGGNLHIWNLEAPE-------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD 150 (357)
T ss_dssp TTTCCEEEEETTSCEEEECTTSCS-------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS
T ss_pred CCCceEEEecCCCeEEEEeCCCCC-------ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC
Confidence 7999999999999999998764 24678899999999995 467886 8999999999999998754
Q ss_pred -eeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEE----EcCCCCEEEEec-CCceEEEEcCCccEEEE
Q 001123 274 -KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL----SDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (1149)
Q Consensus 274 -~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~la----s~~~~~~v~Sas-d~tIrLWD~~TG~~L~~ 347 (1149)
....+..+..+ ....+.+++ +++++..+++++ +++|++||+++++++..
T Consensus 151 ~~~~~~~~~~~~-------------------------~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 205 (357)
T 3i2n_A 151 DPVANMEPVQGE-------------------------NKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE 205 (357)
T ss_dssp SCSEEECCCTTS-------------------------CCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred CcceeccccCCC-------------------------CCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee
Confidence 22222221110 012344554 456777777665 57899999998765332
Q ss_pred EecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEE
Q 001123 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (1149)
Q Consensus 348 l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~ 427 (1149)
.. +...+.++.+
T Consensus 206 ~~--------------------------------------------------------------------~~~~v~~~~~ 217 (357)
T 3i2n_A 206 TN--------------------------------------------------------------------IKNGVCSLEF 217 (357)
T ss_dssp EE--------------------------------------------------------------------CSSCEEEEEE
T ss_pred cC--------------------------------------------------------------------CCCceEEEEc
Confidence 11 1233556677
Q ss_pred cC---CCc-EEEEeCCCeEEEEeC-CCCeeEeee-----cCCccEEEEEe--cCC-EEEEeecCcEEEEEeCC-C-----
Q 001123 428 SI---DGM-IWTGGANGLLLQWDP-NGNRLQDFQ-----YLPFAVQCLCT--FGS-QIWVGYMNGIVQVLDLE-G----- 488 (1149)
Q Consensus 428 s~---Dg~-laSgs~DgtIrlWD~-tG~~l~tl~-----gH~~~V~sls~--dG~-~LaSGs~DGtIrlWD~~-G----- 488 (1149)
+| ++. +++|+.||+|++||+ +++++..+. +|...|+++++ +|+ +|++|+.||.|++||+. +
T Consensus 218 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 297 (357)
T 3i2n_A 218 DRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSK 297 (357)
T ss_dssp SCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--
T ss_pred CCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccc
Confidence 87 554 889999999999999 665555444 89999999976 566 89999999999999964 2
Q ss_pred --------------ceeeeeeccCCCeEEEE--ecCCeEE-eecCCCceeeeeccCC
Q 001123 489 --------------NLLGGWVAHSSPVIKMA--VGAGYIF-TLANHGGIRGWNVTSP 528 (1149)
Q Consensus 489 --------------~~l~~l~gH~~~V~sLa--~Dg~~La-SgS~DgtIRlWdl~sp 528 (1149)
+++..+.+|.+.|.+++ +++++|+ |++.|++|++||+.++
T Consensus 298 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 298 KDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred ccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 36788999999999998 5888888 8999999999998764
No 50
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.97 E-value=1.2e-28 Score=283.37 Aligned_cols=277 Identities=13% Similarity=0.080 Sum_probs=193.9
Q ss_pred cceeEEEEEee--CCeEEEeC-------CCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcC
Q 001123 131 IGCFLRTIVCT--EEQLWAGG-------ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE 201 (1149)
Q Consensus 131 ~~~~l~~l~~~--~~~l~ag~-------D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~ 201 (1149)
+...+++++.. +..|.+++ |++|++|+..++..... .......| ...|.+++|+|
T Consensus 41 H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~---------------~~~~~~~~-~~~V~~~~~s~ 104 (357)
T 4g56_B 41 MEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES---------------LCTAGVQT-EAGVTDVAWVS 104 (357)
T ss_dssp CCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG---------------GCSEEEEC-SSCEEEEEEET
T ss_pred ccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee---------------EecccCCC-CCCEEEEEEcC
Confidence 33467777776 44555543 66799999877654432 00111122 67899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCC
Q 001123 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (1149)
Q Consensus 202 dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~ 280 (1149)
++++ ++|+.||+||+||+.++.+ .......+.+|.++|++|+|+|+|+ |+||+.|++||+||+++++....+..
T Consensus 105 d~~~-l~~s~dg~v~lWd~~~~~~----~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~ 179 (357)
T 4g56_B 105 EKGI-LVASDSGAVELWEILEKES----LLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNA 179 (357)
T ss_dssp TTEE-EEEETTSCEEEC------------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred CCCE-EEEECCCEEEEeeccccce----eEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 9865 5688999999999988652 1111234568999999999999997 89999999999999988765443321
Q ss_pred CcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCC-EEEEe-cCCceEEEEcCCccEEEEEecCCceeeEE
Q 001123 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSA-GFLSFALWDARTRELLKVFNIDGQIENRV 358 (1149)
Q Consensus 281 ~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~-~v~Sa-sd~tIrLWD~~TG~~L~~l~~~g~~~~~v 358 (1149)
| ...+.++++++++. .++++ .|++|++||+++++++..+....
T Consensus 180 -------------------h----------~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~------ 224 (357)
T 4g56_B 180 -------------------H----------SSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCA------ 224 (357)
T ss_dssp -------------------C----------SSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTT------
T ss_pred -------------------C----------CCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeecc------
Confidence 2 25577788877654 55554 57899999999987655433211
Q ss_pred eeccCCCccccccceeeEEecCCCCccceeeeeecccc-ceEeecCCcEEEEeec------ccccCCCCceEEEEEcCCC
Q 001123 359 DMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR-NAIMGAADAVRRVAAK------GGFGDDNRRTEALTTSIDG 431 (1149)
Q Consensus 359 ~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~-~~i~G~~d~v~rv~~~------g~~~~~~~~V~ava~s~Dg 431 (1149)
+...+.++.|.|++. .+++|..++..++|+. ..+.+|...|.+++++|++
T Consensus 225 -----------------------~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~ 281 (357)
T 4g56_B 225 -----------------------SDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHS 281 (357)
T ss_dssp -----------------------CCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSS
T ss_pred -----------------------ccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCC
Confidence 112233455666543 4567777777777752 2467888899999999986
Q ss_pred -c-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe---cCCEEEEeecCcEEEEEeCC
Q 001123 432 -M-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 432 -~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~---dG~~LaSGs~DGtIrlWD~~ 487 (1149)
. |++|+.|++|+|||+ +|++++.+ +|...|+++++ +|++|++|+.||+|++||+.
T Consensus 282 ~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 282 SPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp SCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred CCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 3 889999999999999 67777665 89999999975 58999999999999999975
No 51
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=1.3e-28 Score=325.10 Aligned_cols=328 Identities=12% Similarity=0.089 Sum_probs=180.8
Q ss_pred eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCC
Q 001123 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (1149)
Q Consensus 148 g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~ 227 (1149)
+.|++|++||+.++..... + ..| .++|.+++|+|++++|+||+.||+|++||+.++.+..
T Consensus 720 ~~d~~v~vwd~~~~~~~~~-----------------~--~~h-~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~ 779 (1249)
T 3sfz_A 720 SNDFFLKLWDLNQKECRNT-----------------M--FGH-TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERK 779 (1249)
T ss_dssp ETTSCEEEEETTSSSEEEE-----------------E--CCC-SSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEE
T ss_pred eCCCeEEEEECCCcchhhe-----------------e--cCC-CCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccc
Confidence 4689999999987765533 1 123 7899999999999999999999999999987653100
Q ss_pred ----------------------------------------------CCCccceEEe-ecCCCCEEEEEEeCCCc-EEEEE
Q 001123 228 ----------------------------------------------DDGFGEVLSW-QAHRGPVLSLCISSYGD-LWSGS 259 (1149)
Q Consensus 228 ----------------------------------------------~~~~~~~~~l-~GH~~~VtsVafSpdG~-L~SGS 259 (1149)
.........+ .+|.+.|++++|+|++. +++|+
T Consensus 780 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 859 (1249)
T 3sfz_A 780 SINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL 859 (1249)
T ss_dssp EEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEEC
T ss_pred eecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEe
Confidence 0000111122 38999999999999998 78999
Q ss_pred CCCcEEEEeCCCcceeeecCCCcceeeEEEeeecc--------------ccccccc------------------------
Q 001123 260 EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSY--------------IDLRSHL------------------------ 301 (1149)
Q Consensus 260 ~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~--------------~~l~~~~------------------------ 301 (1149)
.|++|++||+.++.....+..+...+.++.....+ +++....
T Consensus 860 ~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 939 (1249)
T 3sfz_A 860 SQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLA 939 (1249)
T ss_dssp SSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEE
T ss_pred CCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEE
Confidence 99999999998876655544433332222211110 1100000
Q ss_pred ------------cccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccc
Q 001123 302 ------------SVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (1149)
Q Consensus 302 ------------~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~ 368 (1149)
........+...+.++++++++..+++++ +++|++||+.+++.+..+.+|...+..+.+++.
T Consensus 940 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d----- 1014 (1249)
T 3sfz_A 940 VDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTAD----- 1014 (1249)
T ss_dssp EESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSS-----
T ss_pred ecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCC-----
Confidence 00000011233466677777777666554 456777777777776666655555445555544
Q ss_pred cccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecc-----cccCCCCceEEEEEcCCCcEEEEeCCCeEE
Q 001123 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG-----GFGDDNRRTEALTTSIDGMIWTGGANGLLL 443 (1149)
Q Consensus 369 ~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g-----~~~~~~~~V~ava~s~Dg~laSgs~DgtIr 443 (1149)
+..+++++.|+..++|+.. .+..|...+.++.+++++.+++++.|++|+
T Consensus 1015 --------------------------g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~ 1068 (1249)
T 3sfz_A 1015 --------------------------GKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVK 1068 (1249)
T ss_dssp --------------------------SSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEE
T ss_pred --------------------------CCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEE
Confidence 3444444444444433310 122334444444444444444444444444
Q ss_pred EEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEEEE--ecCCeEEeecCC
Q 001123 444 QWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANH 517 (1149)
Q Consensus 444 lWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~D 517 (1149)
+||+ +|++++++.+|...|.++++ +|++|++|+.||+|++||+. ++++..+.+|.+.|.+++ +||++|+|++.|
T Consensus 1069 vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~d 1148 (1249)
T 3sfz_A 1069 VWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDN 1148 (1249)
T ss_dssp EEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred EEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCC
Confidence 4444 34444444444444444432 34444444444444444433 444444444444444444 244444444444
Q ss_pred Cceeeeecc
Q 001123 518 GGIRGWNVT 526 (1149)
Q Consensus 518 gtIRlWdl~ 526 (1149)
|+|++||+.
T Consensus 1149 g~i~vwd~~ 1157 (1249)
T 3sfz_A 1149 GEIRIWNVS 1157 (1249)
T ss_dssp SCCCEEESS
T ss_pred CEEEEEECC
Confidence 444444444
No 52
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=8.5e-28 Score=282.76 Aligned_cols=319 Identities=13% Similarity=0.150 Sum_probs=223.8
Q ss_pred EEEEEeeCCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCC
Q 001123 135 LRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (1149)
Q Consensus 135 l~~l~~~~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DG 213 (1149)
+..+..+++.+++ +.|++|++||+.++..... + ..| .++|.+++|++++ +|+||+.||
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~-----------------~--~~h-~~~V~~l~~~~~~-~l~s~s~dg 183 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQ-----------------L--SGH-DGGVWALKYAHGG-ILVSGSTDR 183 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTEEEEE-----------------E--CCC-SSCEEEEEECSTT-EEEEEETTS
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCCcEEEE-----------------E--eCC-CcCEEEEEEcCCC-EEEEEeCCC
Confidence 4456667888876 4699999999987765543 1 123 8899999999988 999999999
Q ss_pred eEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeC--CCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEe
Q 001123 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS--YGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (1149)
Q Consensus 214 tIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSp--dG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~ 290 (1149)
+|++||+.++. ....+.+|.++|++++|++ ++. |++|+.|++|++||+.+................. .
T Consensus 184 ~i~vwd~~~~~--------~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~ 254 (464)
T 3v7d_B 184 TVRVWDIKKGC--------CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF-H 254 (464)
T ss_dssp CEEEEETTTTE--------EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEE-S
T ss_pred CEEEEECCCCc--------EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEe-e
Confidence 99999998865 4778899999999999994 555 8999999999999998754322111110000000 0
Q ss_pred eeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCcccc
Q 001123 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAME 369 (1149)
Q Consensus 291 ~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~ 369 (1149)
.. ............+...+.++ ++++..+++++ +++|++||+.+++++..+.+|...+.
T Consensus 255 ~~-----~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~------------- 314 (464)
T 3v7d_B 255 TP-----EENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY------------- 314 (464)
T ss_dssp CG-----GGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-------------
T ss_pred cc-----CCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEE-------------
Confidence 00 00000000001112344444 34456666654 78899999999999988876554432
Q ss_pred ccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec------ccccCCCCceEEEEEcCCCcEEEEeCCCeEE
Q 001123 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDDNRRTEALTTSIDGMIWTGGANGLLL 443 (1149)
Q Consensus 370 ~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~------g~~~~~~~~V~ava~s~Dg~laSgs~DgtIr 443 (1149)
++.|.+++..+++|+.|+..++|+. ..+.+|...|.++.++ +..+++|+.||+|+
T Consensus 315 ------------------~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~v~ 375 (464)
T 3v7d_B 315 ------------------STIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS-DKFLVSAAADGSIR 375 (464)
T ss_dssp ------------------EEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC-SSEEEEEETTSEEE
T ss_pred ------------------EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc-CCEEEEEeCCCcEE
Confidence 3445555666777888887777762 2567888899999987 45799999999999
Q ss_pred EEeC-CCCeeEeee-cCCccEEEEEecCCEEEEeecCcEEEEEeCC-Cceeee-eeccCCCeEEEEecCCeEEeec-CCC
Q 001123 444 QWDP-NGNRLQDFQ-YLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGG-WVAHSSPVIKMAVGAGYIFTLA-NHG 518 (1149)
Q Consensus 444 lWD~-tG~~l~tl~-gH~~~V~sls~dG~~LaSGs~DGtIrlWD~~-G~~l~~-l~gH~~~V~sLa~Dg~~LaSgS-~Dg 518 (1149)
+||+ +++....+. .+...+.++.++|++|++|+ ||+|++||++ |+++.. +.+|.+.|++++++++.+++++ .|+
T Consensus 376 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g 454 (464)
T 3v7d_B 376 GWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDG 454 (464)
T ss_dssp EEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEETTEEEEEEEETT
T ss_pred EEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEecCCEEEEEEEeCC
Confidence 9999 666655543 23345556678899999998 8999999976 888775 7899999999998887777665 455
Q ss_pred ceeee
Q 001123 519 GIRGW 523 (1149)
Q Consensus 519 tIRlW 523 (1149)
.+.+|
T Consensus 455 ~~~i~ 459 (464)
T 3v7d_B 455 QSFLE 459 (464)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 44444
No 53
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.97 E-value=1.3e-28 Score=285.84 Aligned_cols=234 Identities=23% Similarity=0.326 Sum_probs=188.2
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCC------------------CCEEEEEEeCC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR------------------GPVLSLCISSY 252 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~------------------~~VtsVafSpd 252 (1149)
.+.|.|++|+|||++||+|+ |++|++|++.++.+ ...+.+|. ..|++++|+|+
T Consensus 64 ~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 134 (393)
T 1erj_A 64 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL--------VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD 134 (393)
T ss_dssp SSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCE--------EEEECC-----------------CCCCBEEEEEECTT
T ss_pred CCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCE--------EEEecCccccccccccccccccCCCceeEEEEEECCC
Confidence 78999999999999999987 78999999988652 44455443 34999999999
Q ss_pred Cc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-
Q 001123 253 GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG- 330 (1149)
Q Consensus 253 G~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas- 330 (1149)
|+ |+||+.|++|+|||+.+++....+. +|. ..+.++++.+++..+++++
T Consensus 135 g~~l~s~~~d~~i~iwd~~~~~~~~~~~-------------------~h~----------~~v~~~~~~p~~~~l~s~s~ 185 (393)
T 1erj_A 135 GKFLATGAEDRLIRIWDIENRKIVMILQ-------------------GHE----------QDIYSLDYFPSGDKLVSGSG 185 (393)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEEC-------------------CCS----------SCEEEEEECTTSSEEEEEET
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEc-------------------cCC----------CCEEEEEEcCCCCEEEEecC
Confidence 98 8999999999999998765433322 222 5677888888888888775
Q ss_pred CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEe
Q 001123 331 FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVA 410 (1149)
Q Consensus 331 d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~ 410 (1149)
|++|++||++++++..++..+.
T Consensus 186 d~~v~iwd~~~~~~~~~~~~~~---------------------------------------------------------- 207 (393)
T 1erj_A 186 DRTVRIWDLRTGQCSLTLSIED---------------------------------------------------------- 207 (393)
T ss_dssp TSEEEEEETTTTEEEEEEECSS----------------------------------------------------------
T ss_pred CCcEEEEECCCCeeEEEEEcCC----------------------------------------------------------
Confidence 6789999999988766543211
Q ss_pred ecccccCCCCceEEEEEcC-CCc-EEEEeCCCeEEEEeC-CCCeeEee-------ecCCccEEEEEe--cCCEEEEeecC
Q 001123 411 AKGGFGDDNRRTEALTTSI-DGM-IWTGGANGLLLQWDP-NGNRLQDF-------QYLPFAVQCLCT--FGSQIWVGYMN 478 (1149)
Q Consensus 411 ~~g~~~~~~~~V~ava~s~-Dg~-laSgs~DgtIrlWD~-tG~~l~tl-------~gH~~~V~sls~--dG~~LaSGs~D 478 (1149)
.+.+++++| +|. +++|+.|++|++||+ +|+++..+ .+|...|.++++ +|++|++|+.|
T Consensus 208 ----------~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d 277 (393)
T 1erj_A 208 ----------GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 277 (393)
T ss_dssp ----------CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ----------CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC
Confidence 233455666 665 789999999999999 78888777 679999999976 69999999999
Q ss_pred cEEEEEeCC-------------CceeeeeeccCCCeEEEE--ecCCeEEeecCCCceeeeeccCCCC
Q 001123 479 GIVQVLDLE-------------GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSPGP 530 (1149)
Q Consensus 479 GtIrlWD~~-------------G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~sp~p 530 (1149)
|+|++||+. +.+...+.+|.+.|.+++ +++++|+|||.|++|++||+.++.+
T Consensus 278 ~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~ 344 (393)
T 1erj_A 278 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP 344 (393)
T ss_dssp SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE
T ss_pred CEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 999999974 345678899999999998 4889999999999999999876543
No 54
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.4e-28 Score=276.93 Aligned_cols=242 Identities=13% Similarity=0.112 Sum_probs=184.8
Q ss_pred eec-CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEe-ec-CCCCEEEEEEeCCCc-EEEEECCCc
Q 001123 188 VKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QA-HRGPVLSLCISSYGD-LWSGSEGGG 263 (1149)
Q Consensus 188 ~~G-~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l-~G-H~~~VtsVafSpdG~-L~SGS~DgT 263 (1149)
+.| .++|.+++|+++ +||||+.|++||+||+.++.. .....+ .+ |.++|++|+|+|+|+ |+|||.|++
T Consensus 10 ~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~------~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF------TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp EECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC------EEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred eccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe------EEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 344 889999999987 999999999999999987431 234445 45 999999999999998 789999999
Q ss_pred EEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCc
Q 001123 264 IKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR 342 (1149)
Q Consensus 264 IRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG 342 (1149)
|||||+....... . ...... .+.+|. ..+.++++++++..+++++ |++|++||+.++
T Consensus 82 v~iw~~~~~~~~~-~--~~~~~~---------~~~~h~----------~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~ 139 (330)
T 2hes_X 82 VSIWAKEESADRT-F--EMDLLA---------IIEGHE----------NEVKGVAWSNDGYYLATCSRDKSVWIWETDES 139 (330)
T ss_dssp EEEEEC--------C--CCEEEE---------EEC--------------CEEEEEECTTSCEEEEEETTSCEEEEECCTT
T ss_pred EEEEEcccCcCcc-c--cceeEE---------EEcCCC----------CcEEEEEECCCCCEEEEEeCCCEEEEEeccCC
Confidence 9999985421100 0 000000 112232 6788999999999898876 688999998532
Q ss_pred -c---EEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCC
Q 001123 343 -E---LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDD 418 (1149)
Q Consensus 343 -~---~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~ 418 (1149)
+ ++.+ +.+|
T Consensus 140 ~~~~~~~~~-------------------------------------------------------------------~~~h 152 (330)
T 2hes_X 140 GEEYECISV-------------------------------------------------------------------LQEH 152 (330)
T ss_dssp CCCCEEEEE-------------------------------------------------------------------ECCC
T ss_pred CCCeEEEEE-------------------------------------------------------------------eccC
Confidence 1 1111 3355
Q ss_pred CCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CC--CeeEeeecCCccEEEEEe--c--CCEEEEeecCcEEEEEeCC-C-
Q 001123 419 NRRTEALTTSIDGM-IWTGGANGLLLQWDP-NG--NRLQDFQYLPFAVQCLCT--F--GSQIWVGYMNGIVQVLDLE-G- 488 (1149)
Q Consensus 419 ~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG--~~l~tl~gH~~~V~sls~--d--G~~LaSGs~DGtIrlWD~~-G- 488 (1149)
...|.+++++|++. |++|+.|++|++||. ++ +++.++.+|...|.++++ + +.+|++|+.|++|++||+. +
T Consensus 153 ~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~ 232 (330)
T 2hes_X 153 SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDD 232 (330)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEEC
T ss_pred CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCC
Confidence 66778889999886 889999999999999 55 689999999999999976 3 5699999999999999975 2
Q ss_pred -------ceeeeeec-cCCCeEEEEe-cCCeEEeecCCCceeeeecc
Q 001123 489 -------NLLGGWVA-HSSPVIKMAV-GAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 489 -------~~l~~l~g-H~~~V~sLa~-Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
.++..+.+ |...|+++++ ++.+|+|++.|++|++|++.
T Consensus 233 ~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~ 279 (330)
T 2hes_X 233 EDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEV 279 (330)
T ss_dssp TTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEE
T ss_pred ccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcC
Confidence 34566665 9999999996 45689999999999999975
No 55
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.97 E-value=4.8e-28 Score=275.36 Aligned_cols=275 Identities=13% Similarity=0.168 Sum_probs=197.0
Q ss_pred ceeEEEEEe--------eCCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcC
Q 001123 132 GCFLRTIVC--------TEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDE 201 (1149)
Q Consensus 132 ~~~l~~l~~--------~~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~ 201 (1149)
...+..++. +...|++ +.|++||+||+.+...... . ..+ ...+.| ..+|.+++|+|
T Consensus 21 ~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~------------~-~~~-~~~l~~h~~~V~~~~~~~ 86 (343)
T 2xzm_R 21 SDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY------------F-GIP-HKALTGHNHFVSDLALSQ 86 (343)
T ss_dssp SSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB------------S-EEE-EEEECCCSSCEEEEEECS
T ss_pred hhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc------------c-ccc-cchhccCCCceEEEEECC
Confidence 345666665 2344555 4699999999875432211 0 001 112334 78999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCC
Q 001123 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (1149)
Q Consensus 202 dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~ 280 (1149)
++.+|+||+.|++||+||+.++. ....+.||.++|++|+|+|+|+ |+|||.|++||+||+... .......
T Consensus 87 ~~~~l~s~s~D~~v~lwd~~~~~--------~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~ 157 (343)
T 2xzm_R 87 ENCFAISSSWDKTLRLWDLRTGT--------TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAE 157 (343)
T ss_dssp STTEEEEEETTSEEEEEETTSSC--------EEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCT
T ss_pred CCCEEEEEcCCCcEEEEECCCCc--------EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeec
Confidence 99999999999999999998865 3678999999999999999997 899999999999999632 2111110
Q ss_pred CcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCC----------CEEEEec-CCceEEEEcCCccEEEEEe
Q 001123 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR----------AKVWSAG-FLSFALWDARTRELLKVFN 349 (1149)
Q Consensus 281 ~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~----------~~v~Sas-d~tIrLWD~~TG~~L~~l~ 349 (1149)
. .+| ...+.++++++.+ ..+++++ |++|++|| .+++++.++.
T Consensus 158 ~----------------~~~----------~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~ 210 (343)
T 2xzm_R 158 K----------------ENH----------SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFK 210 (343)
T ss_dssp T----------------TSC----------SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEE
T ss_pred c----------------cCC----------CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEc
Confidence 0 011 1335555555544 4566654 68899999 4566666666
Q ss_pred cCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeeccc------ccCCCCceE
Q 001123 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG------FGDDNRRTE 423 (1149)
Q Consensus 350 ~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~------~~~~~~~V~ 423 (1149)
+|...+ .++.|.+++..+++|+.|+..++|+... ...+...|.
T Consensus 211 ~h~~~v-------------------------------~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~ 259 (343)
T 2xzm_R 211 AHESNV-------------------------------NHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTIN 259 (343)
T ss_dssp CCSSCE-------------------------------EEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEE
T ss_pred Cccccc-------------------------------eEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEE
Confidence 554433 3455666677778888888888876311 112345689
Q ss_pred EEEEcCCCcEEEEeCCCeEEEEeC-CCCeeE--eee-----------cCCccEEEEEe--cCCEEEEeecCcEEEEEeCC
Q 001123 424 ALTTSIDGMIWTGGANGLLLQWDP-NGNRLQ--DFQ-----------YLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 424 ava~s~Dg~laSgs~DgtIrlWD~-tG~~l~--tl~-----------gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~ 487 (1149)
+++++|++.+++++.|++|++||+ +++.+. ++. +|...|+++++ +|++|++|+.||+|++||++
T Consensus 260 ~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 260 QIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp EEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEE
T ss_pred EEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEE
Confidence 999999999888888999999999 565433 444 78888999876 69999999999999999964
No 56
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=2.9e-28 Score=275.77 Aligned_cols=272 Identities=11% Similarity=0.096 Sum_probs=210.5
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
.++|.|++|+|++++|++|+.||+|++||+.++. +.....+.+|.+.|++++|+|+++ |++|+.|++|++||+
T Consensus 8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK------WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE------EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc------EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence 7899999999999999999999999999998753 124778899999999999999997 789999999999999
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccE---E
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL---L 345 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~---L 345 (1149)
.+++...... +..| ...+.++++++++..+++++ ++.|++||+.+++. .
T Consensus 82 ~~~~~~~~~~-----------------~~~~----------~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 134 (372)
T 1k8k_C 82 KGRTWKPTLV-----------------ILRI----------NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC 134 (372)
T ss_dssp ETTEEEEEEE-----------------CCCC----------SSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE
T ss_pred CCCeeeeeEE-----------------eecC----------CCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceee
Confidence 7654221110 0011 25677888888888888765 67899999988763 2
Q ss_pred EEE-ecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec------------
Q 001123 346 KVF-NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------------ 412 (1149)
Q Consensus 346 ~~l-~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~------------ 412 (1149)
..+ .++... +..+.|.+++..++++..++..++|+.
T Consensus 135 ~~~~~~~~~~-------------------------------i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 183 (372)
T 1k8k_C 135 KHIKKPIRST-------------------------------VLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT 183 (372)
T ss_dssp EEECTTCCSC-------------------------------EEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCB
T ss_pred eeeecccCCC-------------------------------eeEEEEcCCCCEEEEEcCCCCEEEEEccccccccccccc
Confidence 222 222222 334455555555666666665555541
Q ss_pred ------------ccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEee
Q 001123 413 ------------GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGY 476 (1149)
Q Consensus 413 ------------g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs 476 (1149)
..+..|...+.+++++|++. +++++.|++|++||+ +++++..+.+|...|.++++ +|++|++|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~- 262 (372)
T 1k8k_C 184 PWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG- 262 (372)
T ss_dssp TTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-
T ss_pred ccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-
Confidence 13457778899999999985 889999999999999 89999999999999998865 68888888
Q ss_pred cCcEEEEEeCCC---c--ee------------------------------------eee-eccCCCeEEEE---ecC---
Q 001123 477 MNGIVQVLDLEG---N--LL------------------------------------GGW-VAHSSPVIKMA---VGA--- 508 (1149)
Q Consensus 477 ~DGtIrlWD~~G---~--~l------------------------------------~~l-~gH~~~V~sLa---~Dg--- 508 (1149)
.|+.|++||+.. + ++ ..+ .+|.+.|.+++ .+|
T Consensus 263 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~ 342 (372)
T 1k8k_C 263 HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKC 342 (372)
T ss_dssp TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSC
T ss_pred eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcce
Confidence 999999999643 1 11 233 49999999997 366
Q ss_pred CeEEeecCCCceeeeeccC
Q 001123 509 GYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 509 ~~LaSgS~DgtIRlWdl~s 527 (1149)
++|+|+|.||+|++|++.+
T Consensus 343 ~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 343 SQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp SEEEEEETTSEEEEEEHHH
T ss_pred eeEEEecCCCceEEEEecC
Confidence 8999999999999999864
No 57
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=2.9e-28 Score=279.21 Aligned_cols=284 Identities=11% Similarity=0.098 Sum_probs=220.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCC----C---c-EEEEECCC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY----G---D-LWSGSEGG 262 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpd----G---~-L~SGS~Dg 262 (1149)
.++|.|++|+| .+|++|+.||+|++|++.++. ...++.....+.+|.++|++++|+|+ | + |++|+.|+
T Consensus 16 ~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg 91 (397)
T 1sq9_A 16 DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLD--NENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG 91 (397)
T ss_dssp SSCEEEEEECS--SEEEEEETTSEEEEEESBCCT--TCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred hcCeEEEEecC--CeEEEEcCCCEEEEEECCCcc--cccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCC
Confidence 88999999999 899999999999999998764 11233457788999999999999999 8 6 89999999
Q ss_pred cEEEEeCCCcce-----eeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEc----CCCCE-EEEec-C
Q 001123 263 GIKIWPWEAIEK-----ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD----HSRAK-VWSAG-F 331 (1149)
Q Consensus 263 TIRVWdl~t~~~-----~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~----~~~~~-v~Sas-d 331 (1149)
+|++|++.+++. ...+..+. .+. ....+.++++. +++.. +++++ +
T Consensus 92 ~i~iw~~~~~~~~~~~~~~~~~~~~----------------~~~--------~~~~v~~~~~~~~~~~~~~~~l~~~~~d 147 (397)
T 1sq9_A 92 DLLFYRITREDETKKVIFEKLDLLD----------------SDM--------KKHSFWALKWGASNDRLLSHRLVATDVK 147 (397)
T ss_dssp CEEEEEEEECTTTCCEEEEEECCSC----------------TTG--------GGSCEEEEEEECCC----CEEEEEEETT
T ss_pred CEEEEEccCCcccccccceeecccc----------------ccc--------CCCcEEEEEEeeccCCCCceEEEEEeCC
Confidence 999999976543 11111110 000 02567788888 77877 77764 6
Q ss_pred CceEEEEcCC------ccEEE-----EEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEe
Q 001123 332 LSFALWDART------RELLK-----VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIM 400 (1149)
Q Consensus 332 ~tIrLWD~~T------G~~L~-----~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~ 400 (1149)
+.|++||+.+ ++++. .+.+. +.....+...+.++.|.+++ .+++
T Consensus 148 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~i~~~~~~~~~-~l~~ 202 (397)
T 1sq9_A 148 GTTYIWKFHPFADESNSLTLNWSPTLELQGT------------------------VESPMTPSQFATSVDISERG-LIAT 202 (397)
T ss_dssp SCEEEEEEESSSSHHHHTTTCCCCEEEEEEE------------------------ECCSSSSCCCCCEEEECTTS-EEEE
T ss_pred CcEEEEeCCccccccccceeeccCcceeeee------------------------eccccCCCCCceEEEECCCc-eEEE
Confidence 7899999988 65544 33210 00001223345567788888 8888
Q ss_pred ecCCcEEEEeec------ccccC---C---CCceEEEEEcCCCc-EEEEeCC---CeEEEEeC-CCCeeEeeec------
Q 001123 401 GAADAVRRVAAK------GGFGD---D---NRRTEALTTSIDGM-IWTGGAN---GLLLQWDP-NGNRLQDFQY------ 457 (1149)
Q Consensus 401 G~~d~v~rv~~~------g~~~~---~---~~~V~ava~s~Dg~-laSgs~D---gtIrlWD~-tG~~l~tl~g------ 457 (1149)
+..++..++|+. ..+.. | ...+.+++++|++. |++|+.| ++|++||+ +++++..+.+
T Consensus 203 ~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 282 (397)
T 1sq9_A 203 GFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQ 282 (397)
T ss_dssp ECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-----
T ss_pred EeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccc
Confidence 888888888762 23455 7 88999999999987 7899999 99999999 7999999999
Q ss_pred -------CCccEEEEEe--cCCEEEEeecCcEEEEEeCC-Cceeeeee------cc---------------CCCeEEEE-
Q 001123 458 -------LPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWV------AH---------------SSPVIKMA- 505 (1149)
Q Consensus 458 -------H~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l~------gH---------------~~~V~sLa- 505 (1149)
|...|.++++ +|++|++|+.||+|++||+. ++++..+. +| ...|.+++
T Consensus 283 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~ 362 (397)
T 1sq9_A 283 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKF 362 (397)
T ss_dssp ---CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEE
T ss_pred ccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEe
Confidence 9999999976 69999999999999999986 88899999 88 99999998
Q ss_pred -ecC----------CeEEeecCCCceeeeeccC
Q 001123 506 -VGA----------GYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 506 -~Dg----------~~LaSgS~DgtIRlWdl~s 527 (1149)
+++ ++|++++.|++|++|++.+
T Consensus 363 ~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 363 LKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp ECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred ccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 476 6999999999999999864
No 58
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-27 Score=263.82 Aligned_cols=269 Identities=18% Similarity=0.164 Sum_probs=210.5
Q ss_pred eec-CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEE
Q 001123 188 VKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (1149)
Q Consensus 188 ~~G-~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIR 265 (1149)
+.| .++|.|++| +++++|++|+.||+|++||+.++. ....+.+|.+.|++++|+|+++ |++|+.|++|+
T Consensus 14 l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 84 (313)
T 3odt_A 14 LKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW--------LGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN 84 (313)
T ss_dssp ECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE--------EEEEEEECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred hhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE--------EEEEeecCCccEEEEEECCCCCEEEEecCCCeEE
Confidence 344 889999999 999999999999999999997754 3667889999999999999998 78999999999
Q ss_pred EEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEe-cCCceEEEEcCCccE
Q 001123 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTREL 344 (1149)
Q Consensus 266 VWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sa-sd~tIrLWD~~TG~~ 344 (1149)
+|++....... ... .+.+| ...+.++.++ +..++++ .+++|++|| +++.
T Consensus 85 ~~~~~~~~~~~-------~~~---------~~~~~----------~~~i~~~~~~--~~~l~~~~~d~~i~~~d--~~~~ 134 (313)
T 3odt_A 85 GVPLFATSGED-------PLY---------TLIGH----------QGNVCSLSFQ--DGVVISGSWDKTAKVWK--EGSL 134 (313)
T ss_dssp EEETTCCTTSC-------C-C---------EECCC----------SSCEEEEEEE--TTEEEEEETTSEEEEEE--TTEE
T ss_pred EEEeeecCCCC-------ccc---------chhhc----------ccCEEEEEec--CCEEEEEeCCCCEEEEc--CCcE
Confidence 99986532100 000 01112 2456666663 4455555 468899999 6777
Q ss_pred EEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeec-cccceEeecCCcEEEEeecc----cccC-C
Q 001123 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQ-RSRNAIMGAADAVRRVAAKG----GFGD-D 418 (1149)
Q Consensus 345 L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~-~~~~~i~G~~d~v~rv~~~g----~~~~-~ 418 (1149)
+..+..+...+..+ .+.+ ++..++++..++..++|+.. .+.. +
T Consensus 135 ~~~~~~~~~~v~~~-------------------------------~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 183 (313)
T 3odt_A 135 VYNLQAHNASVWDA-------------------------------KVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIH 183 (313)
T ss_dssp EEEEECCSSCEEEE-------------------------------EEEETTTTEEEEEETTSCEEEEETTEEEEEECSSC
T ss_pred EEecccCCCceeEE-------------------------------EEccCCCCEEEEEECCCCEEEEecCceEEEEeccC
Confidence 77776655443222 3333 34456667777766666532 3444 7
Q ss_pred CCceEEEEEcCCCcEEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-Cceeeee
Q 001123 419 NRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGW 494 (1149)
Q Consensus 419 ~~~V~ava~s~Dg~laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l 494 (1149)
...+.++++++++.+++|+.||+|++||+ +++++..+.+|...|.++++ +| +|++|+.||+|++||+. ++++..+
T Consensus 184 ~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~ 262 (313)
T 3odt_A 184 NDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVI 262 (313)
T ss_dssp SSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEE
T ss_pred cccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEE
Confidence 78899999999999999999999999999 79999999999999999987 45 79999999999999975 8899999
Q ss_pred eccCCCeEEEEe--cCCeEEeecCCCceeeeeccCC
Q 001123 495 VAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (1149)
Q Consensus 495 ~gH~~~V~sLa~--Dg~~LaSgS~DgtIRlWdl~sp 528 (1149)
.+|...|.++++ +++ +++++.|++|++|++...
T Consensus 263 ~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 263 TLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp ECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred eccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence 999999999984 666 677999999999998753
No 59
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=1.5e-27 Score=280.62 Aligned_cols=292 Identities=13% Similarity=0.103 Sum_probs=210.5
Q ss_pred CCc-eEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeC
Q 001123 191 VSS-VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~-V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl 269 (1149)
..+ +.|+.+ ++.+|+||+.||+|++||+.++. ....+.||.++|++++|+|++.|+|||.||+|++||+
T Consensus 121 ~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~--------~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 121 MTSVITCLQF--EDNYVITGADDKMIRVYDSINKK--------FLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDI 190 (464)
T ss_dssp SSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE--------EEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEET
T ss_pred CCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc--------EEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEEC
Confidence 455 567777 46799999999999999998865 4778899999999999999988899999999999999
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEc--CCCCEEEEec-CCceEEEEcCCccEEE
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD--HSRAKVWSAG-FLSFALWDARTRELLK 346 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~--~~~~~v~Sas-d~tIrLWD~~TG~~L~ 346 (1149)
.+++....+.. | ...+.++.+. +++..+++++ |++|++||+.+++...
T Consensus 191 ~~~~~~~~~~~-------------------h----------~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~ 241 (464)
T 3v7d_B 191 KKGCCTHVFEG-------------------H----------NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241 (464)
T ss_dssp TTTEEEEEECC-------------------C----------SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-
T ss_pred CCCcEEEEECC-------------------C----------CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccc
Confidence 88765443322 1 1445555554 4555666654 6889999999887554
Q ss_pred EEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec------ccccCCCC
Q 001123 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDDNR 420 (1149)
Q Consensus 347 ~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~------g~~~~~~~ 420 (1149)
......... .....+.... ...... .++...+. .+.+++..+++|+.++..++|+. ..+.+|..
T Consensus 242 ~~~~~~~~~-~~~~~~~~~~-----~~~~~~--~~~~~~v~--~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 311 (464)
T 3v7d_B 242 DHGEEHDYP-LVFHTPEENP-----YFVGVL--RGHMASVR--TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD 311 (464)
T ss_dssp -----CCSS-EEESCGGGCT-----TEEEEE--CCCSSCEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred cccccCCcc-eEeeccCCCe-----EEEEEc--cCccceEE--EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC
Confidence 332211110 0011110000 000111 11222222 23556778899999998888873 24667889
Q ss_pred ceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEecCCEEEEeecCcEEEEEeCC-Cceeeee-ec
Q 001123 421 RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGW-VA 496 (1149)
Q Consensus 421 ~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~dG~~LaSGs~DGtIrlWD~~-G~~l~~l-~g 496 (1149)
.|.++++++++. +++|+.||+|++||+ +|+++.++.+|...|.++++++++|++|+.||+|++||+. ++....+ ..
T Consensus 312 ~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 391 (464)
T 3v7d_B 312 RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHT 391 (464)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEECT
T ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeecCC
Confidence 999999999976 889999999999999 8999999999999999999999999999999999999986 4443333 22
Q ss_pred cCCCeEEEEecCCeEEeecCCCceeeeeccCCCCCc
Q 001123 497 HSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLD 532 (1149)
Q Consensus 497 H~~~V~sLa~Dg~~LaSgS~DgtIRlWdl~sp~pld 532 (1149)
+...+.++.++++++++++ |++|++||+.+..++.
T Consensus 392 ~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 392 NLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH 426 (464)
T ss_dssp TCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEE
T ss_pred CCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEe
Confidence 2334445558999999998 9999999998755443
No 60
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.97 E-value=7.9e-29 Score=286.43 Aligned_cols=282 Identities=17% Similarity=0.205 Sum_probs=207.5
Q ss_pred cceeEEEEEee--CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEE
Q 001123 131 IGCFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVW 207 (1149)
Q Consensus 131 ~~~~l~~l~~~--~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~La 207 (1149)
+...+..++.+ .+.|++ +.|++|||||+.++..... ...| ...|.+++|+|+|++|+
T Consensus 65 H~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h-~~~v~~~~~s~~g~~la 124 (380)
T 3iz6_a 65 HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHA-------------------IKLH-CPWVMECAFAPNGQSVA 124 (380)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEE-------------------EECC-CTTCCCCEECTTSSEEE
T ss_pred cccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceE-------------------EecC-CCCEEEEEECCCCCEEE
Confidence 33456666665 445655 5699999999987665432 1133 77899999999999999
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc--EEEEECCCcEEEEeCCCcceeeecCCCccee
Q 001123 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (1149)
Q Consensus 208 SGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~--L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~ 285 (1149)
||+.|++|++|++.+... ..........+.||.+.|.+++|+|++. |+|||.|++||+||+.+++....+....
T Consensus 125 s~~~d~~v~iw~~~~~~~-~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~--- 200 (380)
T 3iz6_a 125 CGGLDSACSIFNLSSQAD-RDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF--- 200 (380)
T ss_dssp ECCSSSCCEEEECCCCSS-CCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS---
T ss_pred EeeCCCcEEEEECCCCcc-ccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc---
Confidence 999999999999976431 0111223456789999999999999753 9999999999999998876544331110
Q ss_pred eEEEeeeccccccccccccceeeeecCCeEEEEEcC-CCCEEEEec-CCceEEEEcC-CccEEEEEecCCceeeEEeecc
Q 001123 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDAR-TRELLKVFNIDGQIENRVDMSL 362 (1149)
Q Consensus 286 ~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~-~~~~v~Sas-d~tIrLWD~~-TG~~L~~l~~~g~~~~~v~~S~ 362 (1149)
..+| ..++.++++.+ ++..+++++ |++|++||++ +++++.++.+|...+
T Consensus 201 -----------~~~h----------~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v------- 252 (380)
T 3iz6_a 201 -----------PSGH----------TADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDI------- 252 (380)
T ss_dssp -----------SSSC----------CSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCC-------
T ss_pred -----------CCCC----------ccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCe-------
Confidence 0112 25567777755 566777765 6889999998 456667766554433
Q ss_pred CCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecc------cccC-------CCCceEEEEEcC
Q 001123 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG------GFGD-------DNRRTEALTTSI 429 (1149)
Q Consensus 363 ~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g------~~~~-------~~~~V~ava~s~ 429 (1149)
.++.|.|++..+++|+.|+..++|+.. .+.. +...+.+++++|
T Consensus 253 ------------------------~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 308 (380)
T 3iz6_a 253 ------------------------NSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI 308 (380)
T ss_dssp ------------------------CEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS
T ss_pred ------------------------EEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC
Confidence 345566666677788888877777622 1211 123478999999
Q ss_pred CCc-EEEEeCCCeEEEEeC-CCCeeEee----ecCCccEEEEEe--cCCEEEEeecCcEEEEEeCCC
Q 001123 430 DGM-IWTGGANGLLLQWDP-NGNRLQDF----QYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEG 488 (1149)
Q Consensus 430 Dg~-laSgs~DgtIrlWD~-tG~~l~tl----~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~G 488 (1149)
+|. +++|+.||+|++||. +++++..+ .+|...|+++++ +|++|++|+.||+|+|||+.+
T Consensus 309 ~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 309 SGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp SSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred CCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 987 789999999999999 78888877 689999999875 799999999999999999874
No 61
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=7.3e-29 Score=291.69 Aligned_cols=272 Identities=12% Similarity=0.070 Sum_probs=194.6
Q ss_pred CCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeC-CCc-EEEEECCCcEEEE
Q 001123 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGIKIW 267 (1149)
Q Consensus 191 ~~~V~~lafs~-dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSp-dG~-L~SGS~DgTIRVW 267 (1149)
...|+||+|+| ++.+||||+.||+|++||+.++.. .....+.||.++|++|+|+| ++. |+|||.||+||+|
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~------~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK------PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC------CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc------eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 67899999999 567999999999999999987652 23456789999999999998 565 8999999999999
Q ss_pred eCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEE
Q 001123 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (1149)
Q Consensus 268 dl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~ 346 (1149)
|+++.........+ . ....+.++++++++..+++++ +++|++||+++ +.+.
T Consensus 193 d~~~~~~~~~~~~~-------------------~--------~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~ 244 (435)
T 4e54_B 193 DFKGNILRVFASSD-------------------T--------INIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELW 244 (435)
T ss_dssp ETTSCEEEEEECCS-------------------S--------CSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCC
T ss_pred eccCCceeEEeccC-------------------C--------CCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeE
Confidence 99764321111100 0 012244567778888888776 57899999864 4445
Q ss_pred EEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeecccc-ceEeecCCcEEEEeecc---------ccc
Q 001123 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR-NAIMGAADAVRRVAAKG---------GFG 416 (1149)
Q Consensus 347 ~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~-~~i~G~~d~v~rv~~~g---------~~~ 416 (1149)
++.+|...+. ++.|.+.+. .+++|+.|+..++|+.. ...
T Consensus 245 ~~~~h~~~v~-------------------------------~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~ 293 (435)
T 4e54_B 245 NLRMHKKKVT-------------------------------HVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSL 293 (435)
T ss_dssp CSBCCSSCEE-------------------------------EEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCC
T ss_pred EEecccceEE-------------------------------eeeecCCCceEEEEecCcceeeEEecccccccceEEEee
Confidence 5555444433 344444443 34466667766666521 124
Q ss_pred CCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCcc-------EEE-EEecCCEEEEee----------
Q 001123 417 DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFA-------VQC-LCTFGSQIWVGY---------- 476 (1149)
Q Consensus 417 ~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~-------V~s-ls~dG~~LaSGs---------- 476 (1149)
+|...|.+++|+|||. |++|+.||+|+|||+ +++++..+.+|... +.+ ..+++.++++|+
T Consensus 294 ~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 373 (435)
T 4e54_B 294 PHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCT 373 (435)
T ss_dssp BCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSS
T ss_pred eccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEE
Confidence 6788899999999986 889999999999999 78888888776532 111 122344554443
Q ss_pred --cCcEEEEEeCC-Cceeeee-eccCCCeEEEE---ecCCeEEeecCCCceeeeeccCC
Q 001123 477 --MNGIVQVLDLE-GNLLGGW-VAHSSPVIKMA---VGAGYIFTLANHGGIRGWNVTSP 528 (1149)
Q Consensus 477 --~DGtIrlWD~~-G~~l~~l-~gH~~~V~sLa---~Dg~~LaSgS~DgtIRlWdl~sp 528 (1149)
.+++|++||.. |+++..+ .+|...|.++. ++|++|+||+ |++|++|++...
T Consensus 374 ~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 374 PYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp TTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred ecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence 45689999976 8887765 47888998873 5899999987 889999998754
No 62
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=3.6e-29 Score=285.54 Aligned_cols=267 Identities=10% Similarity=0.053 Sum_probs=193.6
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
.++|.|++|+|+|++|++|+.||+|++||+.++. ......+.+|.++|++++|+|+|+ |+|||.|++|++||+
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG------WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE------EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc------eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 6799999999999999999999999999998752 023566889999999999999997 899999999999999
Q ss_pred CCcc---eeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCcc--
Q 001123 270 EAIE---KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE-- 343 (1149)
Q Consensus 270 ~t~~---~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~-- 343 (1149)
.+++ ....+ .+| ...+.++++++++..+++++ +++|++||+++++
T Consensus 85 ~~~~~~~~~~~~-------------------~~~----------~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 135 (377)
T 3dwl_C 85 RPDGTWKQTLVL-------------------LRL----------NRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW 135 (377)
T ss_dssp ----CCCCEEEC-------------------CCC----------SSCEEEEECCTTSSCCEEEESSSCEEECCC-----C
T ss_pred CCCCceeeeeEe-------------------ccc----------CCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc
Confidence 7754 11111 112 25678888888888777765 6789999999887
Q ss_pred -EEEEEec-CCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec---------
Q 001123 344 -LLKVFNI-DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--------- 412 (1149)
Q Consensus 344 -~L~~l~~-~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~--------- 412 (1149)
+++.+.. |...+..+.++ +++..+++++.|+..++|+.
T Consensus 136 ~~~~~~~~~h~~~v~~~~~~-------------------------------~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 184 (377)
T 3dwl_C 136 WVSKHLKRPLRSTILSLDWH-------------------------------PNNVLLAAGCADRKAYVLSAYVRDVDAKP 184 (377)
T ss_dssp CCCEEECSSCCSCEEEEEEC-------------------------------TTSSEEEEEESSSCEEEEEECCSSCC-CC
T ss_pred eeeeEeecccCCCeEEEEEc-------------------------------CCCCEEEEEeCCCEEEEEEEEecccCCCc
Confidence 3556654 44444444444 44444455555554444431
Q ss_pred ---------------ccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCe----eEeeecCCccEEEEEe--cC
Q 001123 413 ---------------GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNR----LQDFQYLPFAVQCLCT--FG 469 (1149)
Q Consensus 413 ---------------g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~----l~tl~gH~~~V~sls~--dG 469 (1149)
..+ +|...|.+++++|+|. |++|+.||+|++||+ ++++ +.++.+|...|.++++ +|
T Consensus 185 ~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 263 (377)
T 3dwl_C 185 EASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES 263 (377)
T ss_dssp CSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT
T ss_pred cccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC
Confidence 124 7888899999999987 899999999999999 6777 8899999999998865 79
Q ss_pred CEEEEeecCcEEEEEeCC--C-ceee--------------------------------------------------eeec
Q 001123 470 SQIWVGYMNGIVQVLDLE--G-NLLG--------------------------------------------------GWVA 496 (1149)
Q Consensus 470 ~~LaSGs~DGtIrlWD~~--G-~~l~--------------------------------------------------~l~g 496 (1149)
++|++|+.|+.+ +|+.. + ++.. ...+
T Consensus 264 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 342 (377)
T 3dwl_C 264 AIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTV 342 (377)
T ss_dssp EEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSS
T ss_pred CEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCcc
Confidence 999999888877 66643 2 1111 1123
Q ss_pred cCCCeEEEEe---cCC---eEEeecCCCceeeeec
Q 001123 497 HSSPVIKMAV---GAG---YIFTLANHGGIRGWNV 525 (1149)
Q Consensus 497 H~~~V~sLa~---Dg~---~LaSgS~DgtIRlWdl 525 (1149)
|.+.|.+|++ ++. .++|+|.||+||+||+
T Consensus 343 H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 343 HQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp CSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 9999999983 333 6999999999999985
No 63
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.96 E-value=6.1e-28 Score=275.34 Aligned_cols=277 Identities=14% Similarity=0.112 Sum_probs=195.4
Q ss_pred EEEEEee--CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeC
Q 001123 135 LRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (1149)
Q Consensus 135 l~~l~~~--~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~ 211 (1149)
+..|+.+ +..|.+ +.|++|||||++++..... ......| ...|.+++|+|+|++|+||+.
T Consensus 19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h-~~~v~~~~~sp~g~~l~s~s~ 81 (345)
T 3fm0_A 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGH-QRTVRKVAWSPCGNYLASASF 81 (345)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE----------------EEECSSC-SSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee----------------eeecccc-CCcEEEEEECCCCCEEEEEEC
Confidence 3445554 445554 5699999999876542211 0001123 789999999999999999999
Q ss_pred CCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEe
Q 001123 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (1149)
Q Consensus 212 DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~ 290 (1149)
|++|++|++.++. .....++.||.++|++|+|+|+|+ |+|||.|++|++||+.+....... .
T Consensus 82 D~~v~iw~~~~~~------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~-------~---- 144 (345)
T 3fm0_A 82 DATTCIWKKNQDD------FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV-------S---- 144 (345)
T ss_dssp TSCEEEEEECCC-------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEE-------E----
T ss_pred CCcEEEEEccCCC------eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEE-------E----
Confidence 9999999988753 234677899999999999999997 899999999999999764321100 0
Q ss_pred eeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCcc--EEEEEecCCceeeEEeeccCCCcc
Q 001123 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE--LLKVFNIDGQIENRVDMSLLPDFA 367 (1149)
Q Consensus 291 ~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~--~L~~l~~~g~~~~~v~~S~~~~~~ 367 (1149)
.+.+| ...+.++++++++..+++++ |++|++||..+++ ++.++.+|...+.++.+++.+.
T Consensus 145 -----~~~~h----------~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~-- 207 (345)
T 3fm0_A 145 -----VLNSH----------TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ-- 207 (345)
T ss_dssp -----EECCC----------CSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSS--
T ss_pred -----EecCc----------CCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCC--
Confidence 01122 25688889999888888776 6789999998876 4456666666555555555443
Q ss_pred ccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec---------------------cccc-CCCCceEEE
Q 001123 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK---------------------GGFG-DDNRRTEAL 425 (1149)
Q Consensus 368 ~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~---------------------g~~~-~~~~~V~av 425 (1149)
.+++++.|+..++|.. ..+. .|...|.++
T Consensus 208 -----------------------------~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 258 (345)
T 3fm0_A 208 -----------------------------RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDI 258 (345)
T ss_dssp -----------------------------EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEE
T ss_pred -----------------------------EEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEE
Confidence 3444444444443321 0122 267789999
Q ss_pred EEcCCCc-EEEEeCCCeEEEEeC-CCC---------eeEeeecCCccEEEEEe--cC-CEEEEeecCcEEEEEeCC-Cce
Q 001123 426 TTSIDGM-IWTGGANGLLLQWDP-NGN---------RLQDFQYLPFAVQCLCT--FG-SQIWVGYMNGIVQVLDLE-GNL 490 (1149)
Q Consensus 426 a~s~Dg~-laSgs~DgtIrlWD~-tG~---------~l~tl~gH~~~V~sls~--dG-~~LaSGs~DGtIrlWD~~-G~~ 490 (1149)
++++++. +++++.|++|++|+. .+. ....+.+|...|+++++ ++ .+||||+.||+|++|++. ++.
T Consensus 259 ~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 259 AWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp EECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred EEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 9999875 899999999999998 332 12334689999999987 45 599999999999999976 443
Q ss_pred e
Q 001123 491 L 491 (1149)
Q Consensus 491 l 491 (1149)
+
T Consensus 339 ~ 339 (345)
T 3fm0_A 339 L 339 (345)
T ss_dssp -
T ss_pred c
Confidence 3
No 64
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.96 E-value=1.1e-27 Score=289.82 Aligned_cols=303 Identities=16% Similarity=0.142 Sum_probs=233.1
Q ss_pred eCCeEEEeCCCCEEEEeCCCC----CCCCccccccccCCCCCCCCCCceeeeec-CCc-eEEEEEcC--CCCEEEEEeCC
Q 001123 141 TEEQLWAGGENGLRVWNLKEL----YDESESDSVSVSKSKGEDGTAPFKESVKG-VSS-VMCMVGDE--ASGVVWSGHRD 212 (1149)
Q Consensus 141 ~~~~l~ag~D~tVrvWd~~~g----~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~-V~~lafs~--dg~~LaSGS~D 212 (1149)
+++.+.++.++.|+|||++++ .... .+.| ..+ |.|++|+| ++++|++|+.|
T Consensus 29 dg~~l~~~~~~~v~v~~~~~~~~~~~~~~---------------------~~~~h~~~~v~~~~~sp~~~~~~l~s~~~d 87 (615)
T 1pgu_A 29 TTNAIAYPCGKSAFVRCLDDGDSKVPPVV---------------------QFTGHGSSVVTTVKFSPIKGSQYLCSGDES 87 (615)
T ss_dssp TTTEEEEEETTEEEEEECCSSCCSSCSEE---------------------EECTTTTSCEEEEEECSSTTCCEEEEEETT
T ss_pred CCCEEEEecCCeEEEEECCCCCCccccce---------------------EEecCCCceEEEEEECcCCCCCEEEEecCC
Confidence 356677777999999999876 3222 1334 778 99999999 99999999999
Q ss_pred CeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECC----CcEEEEeCCCcceeeecCCCcceeeE
Q 001123 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG----GGIKIWPWEAIEKALSLKPEERHTAA 287 (1149)
Q Consensus 213 GtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~D----gTIRVWdl~t~~~~~~l~~~~~~~~a 287 (1149)
|+|++||+.++.............+.+|.++|++++|+|+|+ |++++.| +.|++||. ++....+.
T Consensus 88 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~~~~~~~~-------- 157 (615)
T 1pgu_A 88 GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--GNSLGEVS-------- 157 (615)
T ss_dssp SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT--CCEEEECC--------
T ss_pred CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC--CCcceeee--------
Confidence 999999997541000000134567889999999999999998 7888888 78999984 33222221
Q ss_pred EEeeeccccccccccccceeeeecCCeEEEEEcCCCC-EEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCC
Q 001123 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (1149)
Q Consensus 288 ~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~-~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~ 365 (1149)
+| ...+.++++++++. .+++++ +++|++||+.+++++..+..+...
T Consensus 158 -----------~~----------~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~----------- 205 (615)
T 1pgu_A 158 -----------GH----------SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ----------- 205 (615)
T ss_dssp -----------SC----------SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCT-----------
T ss_pred -----------cC----------CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCC-----------
Confidence 12 25677888888876 566654 688999999999999888765540
Q ss_pred ccccccceeeEEecCCCCccceeeeeecc-ccceEeecCCcEEEEeec------ccc-c---CCCCceEEEEEcCCCc-E
Q 001123 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQR-SRNAIMGAADAVRRVAAK------GGF-G---DDNRRTEALTTSIDGM-I 433 (1149)
Q Consensus 366 ~~~~~~~~~~~~s~~~k~~~~~si~f~~~-~~~~i~G~~d~v~rv~~~------g~~-~---~~~~~V~ava~s~Dg~-l 433 (1149)
...+.++.|.++ +..++++..++..++|+. ..+ . .|...|.++.++ ++. +
T Consensus 206 -----------------~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l 267 (615)
T 1pgu_A 206 -----------------GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKF 267 (615)
T ss_dssp -----------------TCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEE
T ss_pred -----------------CceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEE
Confidence 002234455555 566677777777677652 134 4 788899999999 765 8
Q ss_pred EEEeCCCeEEEEeC-CCCeeEeeecCC----ccEEEEEe-cCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEEEEe
Q 001123 434 WTGGANGLLLQWDP-NGNRLQDFQYLP----FAVQCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV 506 (1149)
Q Consensus 434 aSgs~DgtIrlWD~-tG~~l~tl~gH~----~~V~sls~-dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa~ 506 (1149)
++++.|++|++||+ +++++..+..|. ..+.++.+ ++++|++|+.||.|++||+. ++++..+.+|.+.|.++++
T Consensus 268 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 347 (615)
T 1pgu_A 268 ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV 347 (615)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe
Confidence 89999999999999 789999998873 56666654 89999999999999999987 7889999999999999999
Q ss_pred cCCeEEeecCCCceeeeecc
Q 001123 507 GAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 507 Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
+. +++++.|++|++|++.
T Consensus 348 -~~-l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 348 -NP-LISGSYDGRIMEWSSS 365 (615)
T ss_dssp -TT-TEEEETTSCEEETTTT
T ss_pred -cC-cEEECCCCeEEEEEch
Confidence 77 9999999999999975
No 65
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.96 E-value=1.9e-27 Score=279.33 Aligned_cols=264 Identities=19% Similarity=0.267 Sum_probs=212.0
Q ss_pred CCc-eEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeC
Q 001123 191 VSS-VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~-V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl 269 (1149)
.+. +.|+.+ +|.+|+||+.||+|++||+.++. ....+.||.++|++++|++ ..|+||+.||+|++||+
T Consensus 118 ~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~~--------~~~~~~~h~~~v~~~~~~~-~~l~s~~~dg~i~vwd~ 186 (445)
T 2ovr_B 118 DDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGK--------CLRTLVGHTGGVWSSQMRD-NIIISGSTDRTLKVWNA 186 (445)
T ss_dssp TTSCEEEEEE--ETTEEEEEETTSCEEEEETTTCC--------EEEECCCCSSCEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred CCCcEEEEEE--cCCEEEEEECCCcEEEEECCCCc--------EEEEEcCCCCCEEEEEecC-CEEEEEeCCCeEEEEEC
Confidence 444 466555 68999999999999999998865 3778899999999999984 35899999999999999
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEe-cCCceEEEEcCCccEEEEE
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVF 348 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sa-sd~tIrLWD~~TG~~L~~l 348 (1149)
.+++....+.. | ...+.++.+++ ..++++ .|++|++||+.+++++..+
T Consensus 187 ~~~~~~~~~~~-------------------h----------~~~v~~~~~~~--~~l~s~s~dg~i~~wd~~~~~~~~~~ 235 (445)
T 2ovr_B 187 ETGECIHTLYG-------------------H----------TSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVL 235 (445)
T ss_dssp TTTEEEEEECC-------------------C----------SSCEEEEEEET--TEEEEEETTSEEEEEESSSCCEEEEE
T ss_pred CcCcEEEEECC-------------------C----------CCcEEEEEecC--CEEEEEeCCCEEEEEECCCCcEEEEE
Confidence 88765443322 1 13455666643 345554 5789999999999999988
Q ss_pred ecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec------ccccCCCCce
Q 001123 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDDNRRT 422 (1149)
Q Consensus 349 ~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~------g~~~~~~~~V 422 (1149)
.++...+..+.+ ++..+++|..++..++|+. ..+.+|...+
T Consensus 236 ~~~~~~v~~~~~---------------------------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 282 (445)
T 2ovr_B 236 MGHVAAVRCVQY---------------------------------DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 282 (445)
T ss_dssp ECCSSCEEEEEE---------------------------------CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCE
T ss_pred cCCcccEEEEEE---------------------------------CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCce
Confidence 776654332222 2345566777776666652 2456788889
Q ss_pred EEEEEcCCCcEEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEecCCEEEEeecCcEEEEEeCC-Cceeeeeec---c
Q 001123 423 EALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA---H 497 (1149)
Q Consensus 423 ~ava~s~Dg~laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~g---H 497 (1149)
.++.+ .+..+++|+.|++|++||+ +++++.++.+|...+.++++++++|++|+.||+|++||+. ++++..+.+ |
T Consensus 283 ~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 361 (445)
T 2ovr_B 283 YSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH 361 (445)
T ss_dssp EEEEE-CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSC
T ss_pred EEEEE-CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCC
Confidence 99988 3445899999999999999 8999999999999999999999999999999999999975 888888887 8
Q ss_pred CCCeEEEEecCCeEEeecCCCceeeeeccCCCC
Q 001123 498 SSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGP 530 (1149)
Q Consensus 498 ~~~V~sLa~Dg~~LaSgS~DgtIRlWdl~sp~p 530 (1149)
.+.|.+++++++++++|+.||+|++||+.++..
T Consensus 362 ~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 394 (445)
T 2ovr_B 362 QSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF 394 (445)
T ss_dssp SSCEEEEEECSSEEEEEETTSEEEEEETTTCCE
T ss_pred CCCEEEEEECCCEEEEEeCCCeEEEEECCCCce
Confidence 999999999999999999999999999876543
No 66
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.96 E-value=6.7e-28 Score=276.43 Aligned_cols=269 Identities=10% Similarity=0.035 Sum_probs=202.8
Q ss_pred CCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeC-CCc-EEEEECCCcEEEE
Q 001123 191 VSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGIKIW 267 (1149)
Q Consensus 191 ~~~V~~lafs~dg-~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSp-dG~-L~SGS~DgTIRVW 267 (1149)
.+.|.|++|+|++ ++|++|+.||+|++||+.++.. .....+.+|.+.|++++|+| ++. |++|+.|++|++|
T Consensus 73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw 146 (383)
T 3ei3_B 73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK------TSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLR 146 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC------EEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEE
T ss_pred CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc------ceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEE
Confidence 7899999999999 9999999999999999987652 12223358999999999999 555 8999999999999
Q ss_pred eCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEE
Q 001123 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (1149)
Q Consensus 268 dl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~ 346 (1149)
|+.+. ....+... .+ ....+.++++++++..+++++ +++|++||+ +++++.
T Consensus 147 d~~~~-~~~~~~~~----------------~~----------~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~ 198 (383)
T 3ei3_B 147 DFSGS-VIQVFAKT----------------DS----------WDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIF 198 (383)
T ss_dssp ETTSC-EEEEEECC----------------CC----------SSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEE
T ss_pred ECCCC-ceEEEecc----------------CC----------CCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEE
Confidence 99752 21111110 00 124577888889888888776 578999999 678888
Q ss_pred EEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeecccc-ceEeecCCcEEEEeeccc---------cc
Q 001123 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR-NAIMGAADAVRRVAAKGG---------FG 416 (1149)
Q Consensus 347 ~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~-~~i~G~~d~v~rv~~~g~---------~~ 416 (1149)
.+..|...+..+.+ .+++. .+++++.|+..++|+... ..
T Consensus 199 ~~~~h~~~v~~~~~-------------------------------~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 247 (383)
T 3ei3_B 199 KEKLHKAKVTHAEF-------------------------------NPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM 247 (383)
T ss_dssp EEECSSSCEEEEEE-------------------------------CSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE
T ss_pred EeccCCCcEEEEEE-------------------------------CCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe
Confidence 88766655444444 44444 456666666666665221 12
Q ss_pred CCCCceEEEEEcC-CCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCc-----------------cEEEE--EecCCEEEE
Q 001123 417 DDNRRTEALTTSI-DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPF-----------------AVQCL--CTFGSQIWV 474 (1149)
Q Consensus 417 ~~~~~V~ava~s~-Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~-----------------~V~sl--s~dG~~LaS 474 (1149)
+|...|.+++++| +|. +++++.|++|++||+ ++++++++.+|.. .+.++ +++|++ +
T Consensus 248 ~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s 325 (383)
T 3ei3_B 248 PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--L 325 (383)
T ss_dssp ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--C
T ss_pred cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--c
Confidence 5778899999999 886 789999999999999 7888888876642 22333 346666 8
Q ss_pred eecCcEEEEEeCC-Cceeeeeec--cCCCeEEEE--ecCCeEEeecCCCceeeeeccC
Q 001123 475 GYMNGIVQVLDLE-GNLLGGWVA--HSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 475 Gs~DGtIrlWD~~-G~~l~~l~g--H~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
|+.||+|++||+. ++++..+.+ |.+.+..++ +++++|++|+ |++|++||+.+
T Consensus 326 ~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 326 LNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred cCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 8899999999975 899999988 456666656 5999999997 99999999864
No 67
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.96 E-value=5.3e-27 Score=261.57 Aligned_cols=269 Identities=14% Similarity=0.177 Sum_probs=204.1
Q ss_pred cceeEEEEEee--CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCCEE
Q 001123 131 IGCFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVV 206 (1149)
Q Consensus 131 ~~~~l~~l~~~--~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~~L 206 (1149)
+...+..++.. +..+.+ +.|++|++||+.++..... +.+ ...|.+++|+|++++|
T Consensus 22 h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~---------------------~~~h~~~v~~~~~~~~~~~l 80 (312)
T 4ery_A 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT---------------------ISGHKLGISDVAWSSDSNLL 80 (312)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE---------------------ECCCSSCEEEEEECTTSSEE
T ss_pred cCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchh---------------------hccCCCceEEEEEcCCCCEE
Confidence 34466677766 444554 5699999999887654432 223 7789999999999999
Q ss_pred EEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCccee
Q 001123 207 WSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (1149)
Q Consensus 207 aSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~ 285 (1149)
++|+.||+|++||+.++. ....+.+|.+.|.+++|+|++. |+||+.|++|++||+.+++....+..
T Consensus 81 ~s~~~d~~i~vwd~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----- 147 (312)
T 4ery_A 81 VSASDDKTLKIWDVSSGK--------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA----- 147 (312)
T ss_dssp EEEETTSEEEEEETTTCC--------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC-----
T ss_pred EEECCCCEEEEEECCCCc--------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecC-----
Confidence 999999999999998865 3678899999999999999997 78999999999999987654333221
Q ss_pred eEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCC
Q 001123 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (1149)
Q Consensus 286 ~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~ 364 (1149)
| ...+.++++++++..+++++ +++|++||+++++++..+..+..
T Consensus 148 --------------~----------~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~----------- 192 (312)
T 4ery_A 148 --------------H----------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN----------- 192 (312)
T ss_dssp --------------C----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSC-----------
T ss_pred --------------C----------CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCC-----------
Confidence 1 14567788888888877765 67899999999988776632211
Q ss_pred CccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecc------cccCCCCce---EEEEEcCCCc-EE
Q 001123 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG------GFGDDNRRT---EALTTSIDGM-IW 434 (1149)
Q Consensus 365 ~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g------~~~~~~~~V---~ava~s~Dg~-la 434 (1149)
..+..+.|.+++..++++..++..++|+.. .+.+|.... ......+++. ++
T Consensus 193 -------------------~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 253 (312)
T 4ery_A 193 -------------------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 253 (312)
T ss_dssp -------------------CCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEE
T ss_pred -------------------CceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEE
Confidence 112234566667777788888877777621 334444332 2233345554 88
Q ss_pred EEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEee--cCcEEEEEeCC
Q 001123 435 TGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGY--MNGIVQVLDLE 487 (1149)
Q Consensus 435 Sgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs--~DGtIrlWD~~ 487 (1149)
+|+.||+|++||+ ++++++.+.+|...|.++++ ++++|++++ .|++|++|+.+
T Consensus 254 sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 254 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 9999999999999 78999999999999999876 689999997 69999999864
No 68
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.2e-28 Score=284.18 Aligned_cols=280 Identities=13% Similarity=0.166 Sum_probs=204.0
Q ss_pred CCceEEEEEcC-CCCEEEEEeCCCeEEEEECCC---CCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEE
Q 001123 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNA---RLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (1149)
Q Consensus 191 ~~~V~~lafs~-dg~~LaSGS~DGtIRvWdl~~---g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIR 265 (1149)
.++|.|++|+| ++.+|+||+.||+|++||+.+ +.+ +.....+ +|.++|++|+|+|++. |++|+.||+|+
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~-----~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~ 136 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV-----YSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQII 136 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC-----CSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc-----cceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEE
Confidence 78999999999 999999999999999999875 321 1223333 6999999999999987 89999999999
Q ss_pred EEeCC---CcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEE--EcCCCCEEEEec-CCceEEEEc
Q 001123 266 IWPWE---AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL--SDHSRAKVWSAG-FLSFALWDA 339 (1149)
Q Consensus 266 VWdl~---t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~la--s~~~~~~v~Sas-d~tIrLWD~ 339 (1149)
+||++ +++....+..+ .+..+. +... + ....+.++. ..+++..+++++ +++|++||+
T Consensus 137 vwd~~~~~~~~~~~~~~~~--~i~~~~-------~~~~----~----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 199 (437)
T 3gre_A 137 VLKVNHYQQESEVKFLNCE--CIRKIN-------LKNF----G----KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDI 199 (437)
T ss_dssp EEEEEEEEETTEEEEEEEE--EEEEEE-------GGGG----S----SCCCEEEEEEEECSSCEEEEEEETTSEEEEEET
T ss_pred EEEeccccCCceeeccccc--eeEEEE-------ccCc----c----cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 99995 33322221111 111110 0000 0 113344444 446666777665 678999999
Q ss_pred CCccEEEEEec--CCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecc----
Q 001123 340 RTRELLKVFNI--DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG---- 413 (1149)
Q Consensus 340 ~TG~~L~~l~~--~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g---- 413 (1149)
++++++.++.. |... +.++.|.+++..+++|+.|+..++|+..
T Consensus 200 ~~~~~~~~~~~~~h~~~-------------------------------v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 248 (437)
T 3gre_A 200 RTLERLQIIENSPRHGA-------------------------------VSSICIDEECCVLILGTTRGIIDIWDIRFNVL 248 (437)
T ss_dssp TTCCEEEEEECCGGGCC-------------------------------EEEEEECTTSCEEEEEETTSCEEEEETTTTEE
T ss_pred CCCeeeEEEccCCCCCc-------------------------------eEEEEECCCCCEEEEEcCCCeEEEEEcCCccE
Confidence 99999988875 2222 3345566666677888888877777621
Q ss_pred --ccc-CCCCceEEEEE----cCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecC--------------------------
Q 001123 414 --GFG-DDNRRTEALTT----SIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL-------------------------- 458 (1149)
Q Consensus 414 --~~~-~~~~~V~ava~----s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH-------------------------- 458 (1149)
.+. .+...|.++++ ++++. +++|+.||+|++||+ +|++++++.+|
T Consensus 249 ~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 328 (437)
T 3gre_A 249 IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS 328 (437)
T ss_dssp EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS
T ss_pred EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc
Confidence 232 56678889954 45674 889999999999999 78988888755
Q ss_pred CccEEEEEe-cCCEEEEeecCcEEEEEeCC-Cceeeeeec-------------------------------------cCC
Q 001123 459 PFAVQCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVA-------------------------------------HSS 499 (1149)
Q Consensus 459 ~~~V~sls~-dG~~LaSGs~DGtIrlWD~~-G~~l~~l~g-------------------------------------H~~ 499 (1149)
...|+++++ +|++|++|+.||+|++||+. ++++..+.+ |.+
T Consensus 329 ~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 408 (437)
T 3gre_A 329 LNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHD 408 (437)
T ss_dssp GGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CC
T ss_pred CCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccccccc
Confidence 345666765 57899999999999999976 777776666 899
Q ss_pred CeEEEEe--c--CCeEEeecCCCceeeee
Q 001123 500 PVIKMAV--G--AGYIFTLANHGGIRGWN 524 (1149)
Q Consensus 500 ~V~sLa~--D--g~~LaSgS~DgtIRlWd 524 (1149)
.|++++. + +.+|+||+.||+|++|+
T Consensus 409 ~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 409 IINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 9999883 4 66999999999999995
No 69
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=8.7e-28 Score=266.13 Aligned_cols=262 Identities=15% Similarity=0.173 Sum_probs=171.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeC--CCc-EEEEECCCcEEEE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS--YGD-LWSGSEGGGIKIW 267 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSp--dG~-L~SGS~DgTIRVW 267 (1149)
.++|.|++|+|++++||+|+.||+|++||+.++. ........+.+|.++|++++|+| |++ |++|+.||+|++|
T Consensus 11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vw 86 (351)
T 3f3f_A 11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT----SNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW 86 (351)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSS----CCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC----CcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence 8899999999999999999999999999998753 22234667899999999999999 576 8999999999999
Q ss_pred eCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCC--CCEEEEec-CCceEEEEcCCccE
Q 001123 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTREL 344 (1149)
Q Consensus 268 dl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~--~~~v~Sas-d~tIrLWD~~TG~~ 344 (1149)
|+.+++....... ..... .+.+ +...+.++++.++ +..+++++ +++|++||+++++.
T Consensus 87 d~~~~~~~~~~~~-~~~~~---------~~~~----------~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 146 (351)
T 3f3f_A 87 EEDPDQEECSGRR-WNKLC---------TLND----------SKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSD 146 (351)
T ss_dssp EECTTSCTTSSCS-EEEEE---------EECC----------CSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTC
T ss_pred ecCCCcccccccC-cceee---------eecc----------cCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHH
Confidence 9977532110000 00000 0111 2256788888887 77777765 67899999998876
Q ss_pred EEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEE
Q 001123 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (1149)
Q Consensus 345 L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~a 424 (1149)
+..+....... .. .+. ...+...+.+
T Consensus 147 ~~~~~~~~~~~----~~--------------~~~------------------------------------~~~~~~~~~~ 172 (351)
T 3f3f_A 147 LRSWTLTSEMK----VL--------------SIP------------------------------------PANHLQSDFC 172 (351)
T ss_dssp TTCCEEEEEEE----SC--------------SCC------------------------------------CSSCSCCCEE
T ss_pred hcccccccccc----cc--------------ccc------------------------------------cCCcccceeE
Confidence 54433211110 00 000 1122233444
Q ss_pred EEEcCC---Cc-EEEEeCCCeEEEEeC-CCCe--eEeeecCCccEEEEEe--cC----CEEEEeecCcEEEEEeCC----
Q 001123 425 LTTSID---GM-IWTGGANGLLLQWDP-NGNR--LQDFQYLPFAVQCLCT--FG----SQIWVGYMNGIVQVLDLE---- 487 (1149)
Q Consensus 425 va~s~D---g~-laSgs~DgtIrlWD~-tG~~--l~tl~gH~~~V~sls~--dG----~~LaSGs~DGtIrlWD~~---- 487 (1149)
+.++|+ +. +++++.|+.+.+|+. .++. +..+.+|...|+++++ +| ++|++|+.||+|++||+.
T Consensus 173 ~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 252 (351)
T 3f3f_A 173 LSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLS 252 (351)
T ss_dssp EEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-
T ss_pred EEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcC
Confidence 444443 22 445555555544444 2322 4444555555555543 23 455555555555555543
Q ss_pred -------------------------------------------CceeeeeeccCCCeEEEE--ecCCeEEeecCCCceee
Q 001123 488 -------------------------------------------GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRG 522 (1149)
Q Consensus 488 -------------------------------------------G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRl 522 (1149)
++++..+.+|.+.|.+++ +++++|+|++.|++|++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~i 332 (351)
T 3f3f_A 253 PLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRL 332 (351)
T ss_dssp --------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEE
T ss_pred ccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEE
Confidence 367889999999999998 58999999999999999
Q ss_pred eeccCCCC
Q 001123 523 WNVTSPGP 530 (1149)
Q Consensus 523 Wdl~sp~p 530 (1149)
|++..+..
T Consensus 333 w~~~~~~~ 340 (351)
T 3f3f_A 333 WKATYSNE 340 (351)
T ss_dssp EEECTTSC
T ss_pred EecCcCcc
Confidence 99986544
No 70
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.96 E-value=5.9e-28 Score=275.86 Aligned_cols=303 Identities=16% Similarity=0.112 Sum_probs=211.8
Q ss_pred CCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCCCC
Q 001123 150 ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSD 228 (1149)
Q Consensus 150 D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~-dg~~LaSGS~DGtIRvWdl~~g~~~~~ 228 (1149)
++++++|+++++..... ...| .++|.|++|+| ++.+|++|+.||+|++||+.++.....
T Consensus 22 ~~~~~v~~~~~~~~~~~-------------------~~~h-~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 81 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDV-------------------ERIH-GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY 81 (408)
T ss_dssp HHHHHHHTEEECTTEEE-------------------CCCC-SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSC
T ss_pred cCcceeeccccCcceee-------------------eecc-CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccce
Confidence 55678888765543322 1134 78999999999 999999999999999999998653100
Q ss_pred CCccceEE-----eecCCCCEEEEEEeC-CCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccc
Q 001123 229 DGFGEVLS-----WQAHRGPVLSLCISS-YGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHL 301 (1149)
Q Consensus 229 ~~~~~~~~-----l~GH~~~VtsVafSp-dG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~ 301 (1149)
........ ..+|.++|++++|+| ++. |++|+.|++|++||+.+++....+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------------------- 140 (408)
T 4a11_B 82 YTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF--------------------- 140 (408)
T ss_dssp EEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEEC---------------------
T ss_pred EeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccC---------------------
Confidence 00000000 136999999999999 554 89999999999999987654433211
Q ss_pred cccceeeeecCCeEEEEEcC---CCCEEEEe-cCCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEE
Q 001123 302 SVNGFSSILTSDIKNLLSDH---SRAKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIV 377 (1149)
Q Consensus 302 ~~~g~~~~~~~dv~~las~~---~~~~v~Sa-sd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~ 377 (1149)
...+..+.+.+ ++..++++ .++.|++||+++++++..+..+...+..+.+++....
T Consensus 141 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------- 200 (408)
T 4a11_B 141 ---------EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDY----------- 200 (408)
T ss_dssp ---------SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTT-----------
T ss_pred ---------CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCc-----------
Confidence 12233333333 33355554 4678999999999988888776655555555543331
Q ss_pred ecCCCCccceeeeeeccccceEeecCCcEEEEeec----------------------ccccCCCCceEEEEEcCCCc-EE
Q 001123 378 TSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK----------------------GGFGDDNRRTEALTTSIDGM-IW 434 (1149)
Q Consensus 378 s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~----------------------g~~~~~~~~V~ava~s~Dg~-la 434 (1149)
.++++..++..++|+. ..+..|...|.+++++|++. ++
T Consensus 201 -------------------ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 261 (408)
T 4a11_B 201 -------------------ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLL 261 (408)
T ss_dssp -------------------EEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEE
T ss_pred -------------------EEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEE
Confidence 1344444554444431 12256778899999999986 88
Q ss_pred EEeCCCeEEEEeC-CCCeeEeeecCCc-----cE-EEEEe-cCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEEEE
Q 001123 435 TGGANGLLLQWDP-NGNRLQDFQYLPF-----AV-QCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA 505 (1149)
Q Consensus 435 Sgs~DgtIrlWD~-tG~~l~tl~gH~~-----~V-~sls~-dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa 505 (1149)
+++.||+|++||+ +++.+..+.++.. .+ ..+.. .+..+++++.|+.|++||+. ++++..+.+|.+.|.+++
T Consensus 262 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~ 341 (408)
T 4a11_B 262 TVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCV 341 (408)
T ss_dssp EEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred EecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEE
Confidence 9999999999999 7776655544321 11 12222 35778888899999999976 899999999999999998
Q ss_pred --ecCCeEEeecCCCceeeeeccCCCCCc
Q 001123 506 --VGAGYIFTLANHGGIRGWNVTSPGPLD 532 (1149)
Q Consensus 506 --~Dg~~LaSgS~DgtIRlWdl~sp~pld 532 (1149)
+++++|+|++.||+|++|++.+..++.
T Consensus 342 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 342 FQSNFQELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp EETTTTEEEEEETTSCEEEEEECC-----
T ss_pred EcCCCCEEEEECCCCeEEEEeCCCCCccC
Confidence 589999999999999999998765544
No 71
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.4e-27 Score=270.55 Aligned_cols=287 Identities=12% Similarity=0.153 Sum_probs=213.4
Q ss_pred CCceEEEEEcCCCC-EEEEEeCCCeEEEEEC----CCCCCCCCCCccceEEee----------cCCCCEEEEEEeCCCc-
Q 001123 191 VSSVMCMVGDEASG-VVWSGHRDGRIMCWKM----NARLLDSDDGFGEVLSWQ----------AHRGPVLSLCISSYGD- 254 (1149)
Q Consensus 191 ~~~V~~lafs~dg~-~LaSGS~DGtIRvWdl----~~g~~~~~~~~~~~~~l~----------GH~~~VtsVafSpdG~- 254 (1149)
.++|.|++|+|+|+ +||+|+.||+|++|++ .++... -.......+. +|.+.|++++|+|+|+
T Consensus 45 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 122 (425)
T 1r5m_A 45 LDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKY--WKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS 122 (425)
T ss_dssp CSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------C--EEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred cCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccc--ccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence 68999999999999 9999999999999999 765410 0000122222 3788999999999997
Q ss_pred EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCc
Q 001123 255 LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLS 333 (1149)
Q Consensus 255 L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~t 333 (1149)
|++|+.||+|++||. ++.....+. +| ...+.++++++++..+++++ +++
T Consensus 123 l~~~~~dg~i~i~~~-~~~~~~~~~-------------------~~----------~~~v~~~~~~~~~~~l~~~~~d~~ 172 (425)
T 1r5m_A 123 IVTGVENGELRLWNK-TGALLNVLN-------------------FH----------RAPIVSVKWNKDGTHIISMDVENV 172 (425)
T ss_dssp EEEEETTSCEEEEET-TSCEEEEEC-------------------CC----------CSCEEEEEECTTSSEEEEEETTCC
T ss_pred EEEEeCCCeEEEEeC-CCCeeeecc-------------------CC----------CccEEEEEECCCCCEEEEEecCCe
Confidence 799999999999994 333222221 12 25677888888888887765 678
Q ss_pred eEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec-
Q 001123 334 FALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK- 412 (1149)
Q Consensus 334 IrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~- 412 (1149)
|++||+.+++.+..+..+......+.. .........+..+.|.+++ .++++..++..++++.
T Consensus 173 i~iwd~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~ 235 (425)
T 1r5m_A 173 TILWNVISGTVMQHFELKETGGSSINA----------------ENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQIT 235 (425)
T ss_dssp EEEEETTTTEEEEEECCC-------------------------------CCCBSCCEEEETT-EEEEECGGGCEEEEETT
T ss_pred EEEEECCCCcEEEEeeccccCccceee----------------ccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcC
Confidence 999999999999888654432100000 0000011113345565553 4667777777777752
Q ss_pred -----ccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEE
Q 001123 413 -----GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQV 483 (1149)
Q Consensus 413 -----g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrl 483 (1149)
..+..|...+.+++++|++. +++++.|++|++||+ +++++..+.+|...|.++++ +| +|++|+.||+|++
T Consensus 236 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i 314 (425)
T 1r5m_A 236 EKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRL 314 (425)
T ss_dssp CSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEE
T ss_pred CCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEE
Confidence 24557888999999999986 889999999999999 78999999999999999976 56 9999999999999
Q ss_pred EeCC-CceeeeeeccCCCeEEEE--ecCCeEEeecCCCceeeeeccC
Q 001123 484 LDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 484 WD~~-G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
||+. ++++..+.+|...|.+++ +++++|++++.|++|++||+..
T Consensus 315 ~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 315 WSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred EECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 9975 888999999999999998 5899999999999999999864
No 72
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.5e-27 Score=305.17 Aligned_cols=372 Identities=11% Similarity=0.060 Sum_probs=236.0
Q ss_pred EEEEEee--CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCC-ceeeeecCCceEEEEEcCC-CCEEEEE
Q 001123 135 LRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAP-FKESVKGVSSVMCMVGDEA-SGVVWSG 209 (1149)
Q Consensus 135 l~~l~~~--~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~-~~~s~~G~~~V~~lafs~d-g~~LaSG 209 (1149)
+..++.+ ...+++ +.|++|++||++++..... .+ ...+.. .....| .++|.+++|+|+ +..|++|
T Consensus 101 V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~----~i-----~~~~~~~~~~~~h-~~~V~sl~~sp~~~~~l~~g 170 (902)
T 2oaj_A 101 ITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSF----KL-----DNLQKSSFFPAAR-LSPIVSIQWNPRDIGTVLIS 170 (902)
T ss_dssp EEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEE----EE-----CCHHHHHTCSSSC-CCCCCEEEEETTEEEEEEEE
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCCccccc----ee-----ccccccccccccC-CCCeEEEEEccCCCCEEEEE
Confidence 4444544 455555 4699999999987653210 00 000000 000123 779999999996 5799999
Q ss_pred eCCCeEEEEECCCCCCCCCCCccceEEeecC------------------CCCEEEEEEeCCCc-EEEEECCCcEEEEeCC
Q 001123 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAH------------------RGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (1149)
Q Consensus 210 S~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH------------------~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~ 270 (1149)
+.||+| +||+.++. ....+.+| .+.|++|+|+|+|+ |+|||.|++|++||+.
T Consensus 171 ~~dg~v-lWd~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~ 241 (902)
T 2oaj_A 171 YEYVTL-TYSLVENE--------IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDAN 241 (902)
T ss_dssp CSSCEE-EEETTTTE--------EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred eCCCcE-EEECCCCc--------eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 999999 99998865 24555554 68899999999998 8999999999999998
Q ss_pred Ccceeee--cC---CC-------------cceeeEEEeee--c----cccccc-ccc-c--cce--ee------------
Q 001123 271 AIEKALS--LK---PE-------------ERHTAALIVER--S----YIDLRS-HLS-V--NGF--SS------------ 308 (1149)
Q Consensus 271 t~~~~~~--l~---~~-------------~~~~~a~~~~~--~----~~~l~~-~~~-~--~g~--~~------------ 308 (1149)
+++.... +. .+ ...+.++.... . ....-+ ... . ..+ +.
T Consensus 242 ~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~ 321 (902)
T 2oaj_A 242 SGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSY 321 (902)
T ss_dssp TCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCH
T ss_pred CCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccch
Confidence 8765432 21 01 11122221100 0 000000 000 0 000 00
Q ss_pred ------------------eecCCeEEEEEcC----------CC-CEEEEecCCceEEEEcCCccEEEE-------EecCC
Q 001123 309 ------------------ILTSDIKNLLSDH----------SR-AKVWSAGFLSFALWDARTRELLKV-------FNIDG 352 (1149)
Q Consensus 309 ------------------~~~~dv~~las~~----------~~-~~v~Sasd~tIrLWD~~TG~~L~~-------l~~~g 352 (1149)
.+.+.+..+++.+ +. ..++.+.+++|++||+.+|..+.. +..+.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~ 401 (902)
T 2oaj_A 322 EGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLR 401 (902)
T ss_dssp HHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBT
T ss_pred hhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccC
Confidence 0123344444322 12 234445578999999988864322 11111
Q ss_pred ceee----------------------------------EEeeccCCCccc--cccceeeEEecC----------------
Q 001123 353 QIEN----------------------------------RVDMSLLPDFAM--EDEFKTKIVTSS---------------- 380 (1149)
Q Consensus 353 ~~~~----------------------------------~v~~S~~~~~~~--~~~~~~~~~s~~---------------- 380 (1149)
..+. ++.+++.+...+ ..+-.+++|...
T Consensus 402 ~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~ 481 (902)
T 2oaj_A 402 PLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSR 481 (902)
T ss_dssp TBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHH
T ss_pred CCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechh
Confidence 1111 223333222222 122345555432
Q ss_pred ----CCCccceeeeeeccccceEeecCCcEEEEeec--c-----------------------------------------
Q 001123 381 ----KKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--G----------------------------------------- 413 (1149)
Q Consensus 381 ----~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~--g----------------------------------------- 413 (1149)
++...+.++.|.|+++.+++|..|+..++|+. +
T Consensus 482 ~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (902)
T 2oaj_A 482 TLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGV 561 (902)
T ss_dssp HTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTC
T ss_pred hcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCC
Confidence 23345778999999999999999998888752 1
Q ss_pred --------cccCCCCceEEEEEcCCCcEEEEeCCCeEEEEeCCC-CeeE-----eee-cCCccEEEEEec----------
Q 001123 414 --------GFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDPNG-NRLQ-----DFQ-YLPFAVQCLCTF---------- 468 (1149)
Q Consensus 414 --------~~~~~~~~V~ava~s~Dg~laSgs~DgtIrlWD~tG-~~l~-----tl~-gH~~~V~sls~d---------- 468 (1149)
.+.+|...|.+|+|||||.||+|+.|++|+|||+++ ..+. .+. +|...|++|+|.
T Consensus 562 ~~g~~~~~~l~~h~~~V~svafSpdG~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~ 641 (902)
T 2oaj_A 562 RQGFMPSTAVHANKGKTSAINNSNIGFVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYS 641 (902)
T ss_dssp SEEEEEEEEECCCSCSEEEEEECBTSEEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSE
T ss_pred CCccceeEEEEcCCCcEEEEEecCCcEEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCc
Confidence 235688899999999999889999999999999955 4432 444 899999999765
Q ss_pred CCEEEEeecCcEEEEEeC----CCceeeeeeccC-----CCeEEEE-ec------------------------CCeEEee
Q 001123 469 GSQIWVGYMNGIVQVLDL----EGNLLGGWVAHS-----SPVIKMA-VG------------------------AGYIFTL 514 (1149)
Q Consensus 469 G~~LaSGs~DGtIrlWD~----~G~~l~~l~gH~-----~~V~sLa-~D------------------------g~~LaSg 514 (1149)
|++|++|+.||+|++||+ +|+++..|.+|. ++|.+++ ++ +..|+++
T Consensus 642 ~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~ 721 (902)
T 2oaj_A 642 SILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG 721 (902)
T ss_dssp EEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC
T ss_pred ceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe
Confidence 479999999999999997 488999999985 7888776 22 2234433
Q ss_pred cCCCceeeeeccC
Q 001123 515 ANHGGIRGWNVTS 527 (1149)
Q Consensus 515 S~DgtIRlWdl~s 527 (1149)
|.+||+|++.+
T Consensus 722 --~~~ir~~~~~~ 732 (902)
T 2oaj_A 722 --FDDIRLITLGK 732 (902)
T ss_dssp --SSEEEEECTTC
T ss_pred --ccceEEEeCcc
Confidence 88999999865
No 73
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.96 E-value=4.8e-27 Score=272.68 Aligned_cols=270 Identities=18% Similarity=0.202 Sum_probs=207.4
Q ss_pred EEEeeCCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeE
Q 001123 137 TIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRI 215 (1149)
Q Consensus 137 ~l~~~~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtI 215 (1149)
.+....+.+++ +.|++|++||++++..... ....+ ...|.+++|+|++.+|++|+.||+|
T Consensus 98 ~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~-~~~v~~v~~s~~~~~l~~~~~dg~i 158 (401)
T 4aez_A 98 LLDWSNLNVVAVALERNVYVWNADSGSVSAL------------------AETDE-STYVASVKWSHDGSFLSVGLGNGLV 158 (401)
T ss_dssp CEEECTTSEEEEEETTEEEEEETTTCCEEEE------------------EECCT-TCCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEeecCCCEEEEECCCeEEEeeCCCCcEeEe------------------eecCC-CCCEEEEEECCCCCEEEEECCCCeE
Confidence 35555566665 5699999999988765432 11113 6789999999999999999999999
Q ss_pred EEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcce-eeecCCCcceeeEEEeeecc
Q 001123 216 MCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEK-ALSLKPEERHTAALIVERSY 294 (1149)
Q Consensus 216 RvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~~-~~~l~~~~~~~~a~~~~~~~ 294 (1149)
++||+.++. ....+.+|.+.|.+++|++ ..|++|+.||+|++||+..... ...+
T Consensus 159 ~iwd~~~~~--------~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~---------------- 213 (401)
T 4aez_A 159 DIYDVESQT--------KLRTMAGHQARVGCLSWNR-HVLSSGSRSGAIHHHDVRIANHQIGTL---------------- 213 (401)
T ss_dssp EEEETTTCC--------EEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEE----------------
T ss_pred EEEECcCCe--------EEEEecCCCCceEEEEECC-CEEEEEcCCCCEEEEecccCcceeeEE----------------
Confidence 999998765 4778899999999999954 2489999999999999974321 1111
Q ss_pred ccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccce
Q 001123 295 IDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFK 373 (1149)
Q Consensus 295 ~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~ 373 (1149)
.+| ...+.++++++++..+++++ |++|++||+++++++..+..
T Consensus 214 ---~~~----------~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~----------------------- 257 (401)
T 4aez_A 214 ---QGH----------SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN----------------------- 257 (401)
T ss_dssp ---ECC----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECC-----------------------
T ss_pred ---cCC----------CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecC-----------------------
Confidence 112 25678888988888888776 68899999998776655432
Q ss_pred eeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc--EEEEe--CCCeEEEEeC-C
Q 001123 374 TKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGG--ANGLLLQWDP-N 448 (1149)
Q Consensus 374 ~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~--laSgs--~DgtIrlWD~-t 448 (1149)
|...|.+++++|++. +++|+ .|++|++||+ +
T Consensus 258 --------------------------------------------~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~ 293 (401)
T 4aez_A 258 --------------------------------------------HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT 293 (401)
T ss_dssp --------------------------------------------CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT
T ss_pred --------------------------------------------CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC
Confidence 223455667888653 45654 7999999999 7
Q ss_pred CCeeEeeecCCccEEEEEe--cCCEEEE--eecCcEEEEEeCC-Cce--eeeeeccCCCeEEEE--ecCCeEEeecCCCc
Q 001123 449 GNRLQDFQYLPFAVQCLCT--FGSQIWV--GYMNGIVQVLDLE-GNL--LGGWVAHSSPVIKMA--VGAGYIFTLANHGG 519 (1149)
Q Consensus 449 G~~l~tl~gH~~~V~sls~--dG~~LaS--Gs~DGtIrlWD~~-G~~--l~~l~gH~~~V~sLa--~Dg~~LaSgS~Dgt 519 (1149)
++++..+. |...|.++++ +|++|++ |+.||.|++||+. ++. ...+.+|.+.|.+++ +|+++|++++.|++
T Consensus 294 ~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~ 372 (401)
T 4aez_A 294 GARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDEN 372 (401)
T ss_dssp CCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSE
T ss_pred CCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 89998886 5578998876 6899999 5699999999976 443 445789999999988 58999999999999
Q ss_pred eeeeeccCCCCC
Q 001123 520 IRGWNVTSPGPL 531 (1149)
Q Consensus 520 IRlWdl~sp~pl 531 (1149)
|++|++.....+
T Consensus 373 i~iw~~~~~~~~ 384 (401)
T 4aez_A 373 LKFWRVYDGDHV 384 (401)
T ss_dssp EEEEECCC----
T ss_pred EEEEECCCCccc
Confidence 999999765443
No 74
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.96 E-value=7.4e-27 Score=263.42 Aligned_cols=271 Identities=14% Similarity=0.157 Sum_probs=194.9
Q ss_pred cceeEEEEEee--C-CeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCCE
Q 001123 131 IGCFLRTIVCT--E-EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGV 205 (1149)
Q Consensus 131 ~~~~l~~l~~~--~-~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~~ 205 (1149)
+...+..|+.. . +.|++ +.|++|++||+.+...... .+ ...+.| ..+|.+++|+++|++
T Consensus 16 H~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~---------------~~-~~~~~~h~~~v~~~~~s~dg~~ 79 (319)
T 3frx_A 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFG---------------VP-VRSFKGHSHIVQDCTLTADGAY 79 (319)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEE---------------EE-EEEEECCSSCEEEEEECTTSSE
T ss_pred ccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccc---------------cc-ceEEeCCcccEEEEEECCCCCE
Confidence 33456667765 2 44555 5699999999864321100 01 112334 889999999999999
Q ss_pred EEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcce
Q 001123 206 VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERH 284 (1149)
Q Consensus 206 LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~ 284 (1149)
|+||+.|++||+||+.++. ....+.||.+.|++++|+|++. |+|||.|++||+||+.. .+...+..+.
T Consensus 80 l~s~s~D~~v~~wd~~~~~--------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~-- 148 (319)
T 3frx_A 80 ALSASWDKTLRLWDVATGE--------TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHN-- 148 (319)
T ss_dssp EEEEETTSEEEEEETTTTE--------EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCS--
T ss_pred EEEEeCCCEEEEEECCCCC--------eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccC--
Confidence 9999999999999998865 3678999999999999999997 79999999999999964 2222222211
Q ss_pred eeEEEeeeccccccccccccceeeeecCCeEEEEEcC------CCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeE
Q 001123 285 TAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH------SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENR 357 (1149)
Q Consensus 285 ~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~------~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~ 357 (1149)
..+..+.+.+ ++..+++++ |++|++||++++++...+.+|...+.
T Consensus 149 ---------------------------~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~- 200 (319)
T 3frx_A 149 ---------------------------DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN- 200 (319)
T ss_dssp ---------------------------SCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEE-
T ss_pred ---------------------------CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEE-
Confidence 2233333333 334566654 68899999999988887776655433
Q ss_pred EeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecc------cccCCCCceEEEEEcCCC
Q 001123 358 VDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG------GFGDDNRRTEALTTSIDG 431 (1149)
Q Consensus 358 v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g------~~~~~~~~V~ava~s~Dg 431 (1149)
++.|.|++..+++|+.|+..++|+.. .+ .+...+.+++++|++
T Consensus 201 ------------------------------~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~ 249 (319)
T 3frx_A 201 ------------------------------TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL-SAQDEVFSLAFSPNR 249 (319)
T ss_dssp ------------------------------EEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE-ECCSCEEEEEECSSS
T ss_pred ------------------------------EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCcEEEEEEcCCC
Confidence 34555666677788888887877632 22 234578999999999
Q ss_pred cEEEEeCCCeEEEEeC-CCCeeEeeec--------CCccEEEEEe--cCCEEEEeecCcEEEEEeCC
Q 001123 432 MIWTGGANGLLLQWDP-NGNRLQDFQY--------LPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 432 ~laSgs~DgtIrlWD~-tG~~l~tl~g--------H~~~V~sls~--dG~~LaSGs~DGtIrlWD~~ 487 (1149)
.+++++.++.|++|++ .+..+..+.. |...|.++++ ||++|++|+.||+|+|||+.
T Consensus 250 ~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 250 YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp SEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred CEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 8665555677999999 4556665543 4567888765 79999999999999999964
No 75
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=8.2e-27 Score=262.09 Aligned_cols=267 Identities=15% Similarity=0.176 Sum_probs=197.8
Q ss_pred CCceEEEEEcCC---CCEEEEEeCCCeEEEEECCC-CCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEE
Q 001123 191 VSSVMCMVGDEA---SGVVWSGHRDGRIMCWKMNA-RLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (1149)
Q Consensus 191 ~~~V~~lafs~d---g~~LaSGS~DGtIRvWdl~~-g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIR 265 (1149)
.+.|.|++|+|+ |.+|++|+.||+|++||+.+ +. .....+.+|.++|++++|+|+++ |++|+.||+|+
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~ 111 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-------TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAK 111 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-------EEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-------eeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEE
Confidence 789999999999 69999999999999999987 32 22367899999999999999997 89999999999
Q ss_pred EEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEE--cCCCCEEEEec-CCceEEEEcCCc
Q 001123 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS--DHSRAKVWSAG-FLSFALWDARTR 342 (1149)
Q Consensus 266 VWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las--~~~~~~v~Sas-d~tIrLWD~~TG 342 (1149)
+||+.+++... +. +| ...+.++++ ++++..+++++ +++|++||++++
T Consensus 112 iwd~~~~~~~~-~~-------------------~~----------~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 161 (368)
T 3mmy_A 112 MWDLSSNQAIQ-IA-------------------QH----------DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS 161 (368)
T ss_dssp EEETTTTEEEE-EE-------------------EC----------SSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS
T ss_pred EEEcCCCCcee-ec-------------------cc----------cCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC
Confidence 99998765321 10 11 255677777 77777777665 688999999999
Q ss_pred cEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecc--------c
Q 001123 343 ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG--------G 414 (1149)
Q Consensus 343 ~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g--------~ 414 (1149)
+++..+..+.... .+.+... .++.+..++...++... .
T Consensus 162 ~~~~~~~~~~~~~-~~~~~~~---------------------------------~~~~~~~~~~i~~~~~~~~~~~~~~~ 207 (368)
T 3mmy_A 162 NPMMVLQLPERCY-CADVIYP---------------------------------MAVVATAERGLIVYQLENQPSEFRRI 207 (368)
T ss_dssp SCSEEEECSSCEE-EEEEETT---------------------------------EEEEEEGGGCEEEEECSSSCEEEEEC
T ss_pred cEEEEEecCCCce-EEEecCC---------------------------------eeEEEeCCCcEEEEEeccccchhhhc
Confidence 9988887665432 1111110 11222222222222210 0
Q ss_pred ccCCCCceEEEEEcCCC-----cEEEEeCCCeEEEEeC-CC---CeeEeeecCCc------------cEEEEEe--cCCE
Q 001123 415 FGDDNRRTEALTTSIDG-----MIWTGGANGLLLQWDP-NG---NRLQDFQYLPF------------AVQCLCT--FGSQ 471 (1149)
Q Consensus 415 ~~~~~~~V~ava~s~Dg-----~laSgs~DgtIrlWD~-tG---~~l~tl~gH~~------------~V~sls~--dG~~ 471 (1149)
.......+.++.+.+++ .+++|+.||.|++||+ .+ .++..+.+|.. .|+++++ +|++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 287 (368)
T 3mmy_A 208 ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGT 287 (368)
T ss_dssp CCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCC
T ss_pred cccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCE
Confidence 11122233444433322 1899999999999999 44 56788888876 6998876 6899
Q ss_pred EEEeecCcEEEEEeCC-CceeeeeeccCCCeEEEE--ecCCeEEeecCCCceeeeeccCC
Q 001123 472 IWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSP 528 (1149)
Q Consensus 472 LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~sp 528 (1149)
|++|+.||+|++||+. ++++..+.+|.+.|.+++ +||++|+++|.|+..+.|++..+
T Consensus 288 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 288 LATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp EEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred EEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccCC
Confidence 9999999999999986 889999999999999998 58999999999998888776543
No 76
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.1e-27 Score=275.61 Aligned_cols=276 Identities=13% Similarity=0.079 Sum_probs=212.8
Q ss_pred CceEEEEEcCCCC-EEEEE----------eCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEE
Q 001123 192 SSVMCMVGDEASG-VVWSG----------HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS 259 (1149)
Q Consensus 192 ~~V~~lafs~dg~-~LaSG----------S~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS 259 (1149)
..|.|++|+|+|+ +|++| +.||+|++||+.++.. ...... .+|.+.|++++|+|+++ |++|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~-----~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~ 86 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADS-----EKPIAS-LQVDSKFNDLDWSHNNKIIAGAL 86 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGG-----CSCSCC-CCCSSCEEEEEECSSSSCEEEEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCC-----CcEEEE-EecCCceEEEEECCCCCeEEEEc
Confidence 4678999999997 99999 8999999999987541 011222 36999999999999997 89999
Q ss_pred CCCcEEEEeCCCc----ceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCC-CCEEEEec-CCc
Q 001123 260 EGGGIKIWPWEAI----EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLS 333 (1149)
Q Consensus 260 ~DgTIRVWdl~t~----~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~-~~~v~Sas-d~t 333 (1149)
.|++|++||+.+. .....+ .+| ...+.+++++++ +..+++++ +++
T Consensus 87 ~dg~v~vw~~~~~~~~~~~~~~~-------------------~~h----------~~~v~~~~~~~~~~~~l~s~~~dg~ 137 (416)
T 2pm9_A 87 DNGSLELYSTNEANNAINSMARF-------------------SNH----------SSSVKTVKFNAKQDNVLASGGNNGE 137 (416)
T ss_dssp SSSCEEEECCSSTTSCCCEEEEC-------------------CCS----------SSCCCEEEECSSSTTBEEEECSSSC
T ss_pred cCCeEEEeecccccccccchhhc-------------------cCC----------ccceEEEEEcCCCCCEEEEEcCCCe
Confidence 9999999999762 111111 112 256778888887 67777775 678
Q ss_pred eEEEEcCCcc------EEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeecc-ccceEeecCCcE
Q 001123 334 FALWDARTRE------LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQR-SRNAIMGAADAV 406 (1149)
Q Consensus 334 IrLWD~~TG~------~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~-~~~~i~G~~d~v 406 (1149)
|++||+.+++ ....+. ....+...+.++.|.++ +..++++..++.
T Consensus 138 v~iwd~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 189 (416)
T 2pm9_A 138 IFIWDMNKCTESPSNYTPLTPG----------------------------QSMSSVDEVISLAWNQSLAHVFASAGSSNF 189 (416)
T ss_dssp EEBCBTTTTSSCTTTCCCBCCC----------------------------CSCCSSCCCCEEEECSSCTTEEEEESSSSC
T ss_pred EEEEECCCCccccccccccccc----------------------------cccCCCCCeeEEEeCCCCCcEEEEEcCCCC
Confidence 9999998875 111110 00122234456677777 466778888887
Q ss_pred EEEeecc------cccCC------CCceEEEEEcCCC--cEEEEeCCC---eEEEEeC-CC-CeeEeee-cCCccEEEEE
Q 001123 407 RRVAAKG------GFGDD------NRRTEALTTSIDG--MIWTGGANG---LLLQWDP-NG-NRLQDFQ-YLPFAVQCLC 466 (1149)
Q Consensus 407 ~rv~~~g------~~~~~------~~~V~ava~s~Dg--~laSgs~Dg---tIrlWD~-tG-~~l~tl~-gH~~~V~sls 466 (1149)
.++|+.. .+..+ ...+.+++++|++ .+++++.|+ +|++||+ ++ .++..+. +|...|.+++
T Consensus 190 v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~ 269 (416)
T 2pm9_A 190 ASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLD 269 (416)
T ss_dssp EEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEE
T ss_pred EEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEE
Confidence 7777621 23333 6789999999997 378999998 9999999 55 7788888 9999999997
Q ss_pred e---cCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEEEE--ecC-CeEEeecCCCceeeeeccCCCC
Q 001123 467 T---FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGA-GYIFTLANHGGIRGWNVTSPGP 530 (1149)
Q Consensus 467 ~---dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa--~Dg-~~LaSgS~DgtIRlWdl~sp~p 530 (1149)
+ +|++|++|+.||+|++||+. ++++..+.+|.+.|.+++ +++ ++|++++.|++|++|++....+
T Consensus 270 ~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 270 WCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp ECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred eCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence 6 68999999999999999976 889999999999999998 466 8999999999999999976543
No 77
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.95 E-value=1.6e-27 Score=275.54 Aligned_cols=291 Identities=12% Similarity=0.108 Sum_probs=205.6
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCC
Q 001123 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (1149)
Q Consensus 193 ~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t 271 (1149)
.+.+++|+|+|++|++|+.||+|++||+.++.+ ...+.+| ..+...+|+++|+ |++|+.|++|++||+.+
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 128 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDG--------SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF 128 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEET--------TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccce--------eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC
Confidence 455789999999999999999999999987542 2334556 4455557899997 89999999999999987
Q ss_pred cceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEec
Q 001123 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNI 350 (1149)
Q Consensus 272 ~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~ 350 (1149)
++....+. +| ...+.++++++++..+++++ |++|++||+.+++++..+.+
T Consensus 129 ~~~~~~~~-------------------~h----------~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 179 (420)
T 3vl1_A 129 NLQREIDQ-------------------AH----------VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG 179 (420)
T ss_dssp CEEEEETT-------------------SS----------SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEEC
T ss_pred cceeeecc-------------------cc----------cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcC
Confidence 65433221 12 25678889999888888776 57899999999999999988
Q ss_pred CCceeeEEeeccCCCcccc--ccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEee-----cccccCCCCceE
Q 001123 351 DGQIENRVDMSLLPDFAME--DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-----KGGFGDDNRRTE 423 (1149)
Q Consensus 351 ~g~~~~~v~~S~~~~~~~~--~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~-----~g~~~~~~~~V~ 423 (1149)
|...+..+.+++.....+. .+..+++|...... ....+.. ..++...+..+.. ......+...+.
T Consensus 180 h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~ 251 (420)
T 3vl1_A 180 HRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT-TIHTFNR-------KENPHDGVNSIALFVGTDRQLHEISTSKKN 251 (420)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE-EEEEECB-------TTBTTCCEEEEEEEECCCSSCGGGCCCCCC
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc-eeEEeec-------CCCCCCCccEEEEecCCcceeeecccCccc
Confidence 8777667777665443322 11123333221100 0000000 0011111211110 001122345566
Q ss_pred EEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeee-cCCccEEEEEe--cCC-EEEEeecCcEEEEEeCC-C-ceeeeee
Q 001123 424 ALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQ-YLPFAVQCLCT--FGS-QIWVGYMNGIVQVLDLE-G-NLLGGWV 495 (1149)
Q Consensus 424 ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~-gH~~~V~sls~--dG~-~LaSGs~DGtIrlWD~~-G-~~l~~l~ 495 (1149)
+++++|+|. +++|+.||+|++||+ +++.+..+. +|...|.++++ +|+ +|++|+.||+|++||+. + .++..+.
T Consensus 252 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 331 (420)
T 3vl1_A 252 NLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL 331 (420)
T ss_dssp TTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE
T ss_pred ceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh
Confidence 677889986 789999999999999 777776664 58889999977 576 99999999999999986 4 4478888
Q ss_pred c-cCCCeEEEE-ecCCeEEeecCCCceeeeeccCCC
Q 001123 496 A-HSSPVIKMA-VGAGYIFTLANHGGIRGWNVTSPG 529 (1149)
Q Consensus 496 g-H~~~V~sLa-~Dg~~LaSgS~DgtIRlWdl~sp~ 529 (1149)
+ |...|.++. +++++|+|++.|++|++|++..+.
T Consensus 332 ~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 332 INEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp ESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTT
T ss_pred ccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCC
Confidence 7 677888887 588999999999999999997643
No 78
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=9.8e-27 Score=263.00 Aligned_cols=235 Identities=12% Similarity=0.072 Sum_probs=182.7
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCC--Cc-EEEEECCCcEEEE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIW 267 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpd--G~-L~SGS~DgTIRVW 267 (1149)
.++|.|++|+|++++|++|+.||+|++||+..+. ......+.+|.++|++|+|+++ ++ |+||+.||+|++|
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw 84 (379)
T 3jrp_A 11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 84 (379)
T ss_dssp CCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc------ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence 8899999999999999999999999999997432 1346678999999999999977 66 8999999999999
Q ss_pred eCCCcc--eeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCC--CCEEEEec-CCceEEEEcCCc
Q 001123 268 PWEAIE--KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTR 342 (1149)
Q Consensus 268 dl~t~~--~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~--~~~v~Sas-d~tIrLWD~~TG 342 (1149)
|+.+++ ....+ ..| ...+.++++.++ +..+++++ +++|++||++++
T Consensus 85 d~~~~~~~~~~~~-------------------~~~----------~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 135 (379)
T 3jrp_A 85 KEENGRWSQIAVH-------------------AVH----------SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN 135 (379)
T ss_dssp EEETTEEEEEEEE-------------------CCC----------SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTT
T ss_pred EcCCCceeEeeee-------------------cCC----------CcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCC
Confidence 997754 11111 111 256778888887 77777664 678999999876
Q ss_pred cEEE--EEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCC
Q 001123 343 ELLK--VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR 420 (1149)
Q Consensus 343 ~~L~--~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~ 420 (1149)
.... .+. .|..
T Consensus 136 ~~~~~~~~~-------------------------------------------------------------------~~~~ 148 (379)
T 3jrp_A 136 GTTSPIIID-------------------------------------------------------------------AHAI 148 (379)
T ss_dssp SCCCEEEEE-------------------------------------------------------------------CCTT
T ss_pred CceeeEEec-------------------------------------------------------------------CCCC
Confidence 3221 121 2222
Q ss_pred ceEEEEEcC-------------CCc-EEEEeCCCeEEEEeC-CCC----eeEeeecCCccEEEEEe--c---CCEEEEee
Q 001123 421 RTEALTTSI-------------DGM-IWTGGANGLLLQWDP-NGN----RLQDFQYLPFAVQCLCT--F---GSQIWVGY 476 (1149)
Q Consensus 421 ~V~ava~s~-------------Dg~-laSgs~DgtIrlWD~-tG~----~l~tl~gH~~~V~sls~--d---G~~LaSGs 476 (1149)
.|.+++++| ++. +++|+.|++|++||+ ++. ++..+.+|...|.++++ + |++|++|+
T Consensus 149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~ 228 (379)
T 3jrp_A 149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 228 (379)
T ss_dssp CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe
Confidence 334444444 454 889999999999999 553 56788899999999976 5 88999999
Q ss_pred cCcEEEEEeCC-Cc-----eeeeeeccCCCeEEEE--ecCCeEEeecCCCceeeeeccC
Q 001123 477 MNGIVQVLDLE-GN-----LLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 477 ~DGtIrlWD~~-G~-----~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
.||+|++||+. +. .+.....|...|.+++ +++++|++++.|++|++|++..
T Consensus 229 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 229 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 99999999976 32 2334445999999998 5999999999999999999864
No 79
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.95 E-value=1.3e-26 Score=269.94 Aligned_cols=276 Identities=13% Similarity=0.121 Sum_probs=194.6
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCC---CCCCccceEEeecCC------------CCEEEEEEeCCC--
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLD---SDDGFGEVLSWQAHR------------GPVLSLCISSYG-- 253 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~---~~~~~~~~~~l~GH~------------~~VtsVafSpdG-- 253 (1149)
.++|.||+|+|+|.+||+|+.||+|++|++.++... ....+.....++||. ++|++|+|+|++
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 679999999999999999999999999999875410 011223466789998 999999999997
Q ss_pred c-EEEEECCCcEEEEeCCCcceeee---cCCCcceee------EEEe---eeccccccccccccceeeeecCCeEEEEEc
Q 001123 254 D-LWSGSEGGGIKIWPWEAIEKALS---LKPEERHTA------ALIV---ERSYIDLRSHLSVNGFSSILTSDIKNLLSD 320 (1149)
Q Consensus 254 ~-L~SGS~DgTIRVWdl~t~~~~~~---l~~~~~~~~------a~~~---~~~~~~l~~~~~~~g~~~~~~~dv~~las~ 320 (1149)
. |++||.|++|++||+.++..... +..+..... .+.+ ......... .........+...+.+++++
T Consensus 108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEA-SPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEE-EEEEEECSCCSSCCCEEEEC
T ss_pred ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeec-cceEEeccCCCcceEEEEEc
Confidence 4 89999999999999976443211 000000000 0000 000000000 00000001134678899999
Q ss_pred CCCCEEEEecCCceEEEEcCC-ccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceE
Q 001123 321 HSRAKVWSAGFLSFALWDART-RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAI 399 (1149)
Q Consensus 321 ~~~~~v~Sasd~tIrLWD~~T-G~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i 399 (1149)
+++..++++.|++|++||+.+ ++++..+....
T Consensus 187 ~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~----------------------------------------------- 219 (447)
T 3dw8_B 187 SDYETYLSADDLRINLWHLEITDRSFNIVDIKP----------------------------------------------- 219 (447)
T ss_dssp TTSSEEEEECSSEEEEEETTEEEEEEEEEECCC-----------------------------------------------
T ss_pred CCCCEEEEeCCCeEEEEECCCCCceeeeeeccc-----------------------------------------------
Confidence 999999998888999999984 33333321100
Q ss_pred eecCCcEEEEeecccccCCCCceEEEEEcCCC-c-EEEEeCCCeEEEEeC-CCCe----eEeeecCCc------------
Q 001123 400 MGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-M-IWTGGANGLLLQWDP-NGNR----LQDFQYLPF------------ 460 (1149)
Q Consensus 400 ~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg-~-laSgs~DgtIrlWD~-tG~~----l~tl~gH~~------------ 460 (1149)
..+.+|...|.+++++|++ . +++|+.||+|++||+ ++++ ++.+.+|..
T Consensus 220 -------------~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (447)
T 3dw8_B 220 -------------ANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIIS 286 (447)
T ss_dssp -------------SSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTT
T ss_pred -------------ccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCc
Confidence 0144566778899999997 4 889999999999999 6776 788988876
Q ss_pred cEEEEEe--cCCEEEEeecCcEEEEEeCC--CceeeeeeccCCCeE-----------------EEEecCCeEEeecCCCc
Q 001123 461 AVQCLCT--FGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVI-----------------KMAVGAGYIFTLANHGG 519 (1149)
Q Consensus 461 ~V~sls~--dG~~LaSGs~DGtIrlWD~~--G~~l~~l~gH~~~V~-----------------sLa~Dg~~LaSgS~Dgt 519 (1149)
.|.++++ +|++|++|+. |+|+|||+. ++++..+.+|...+. +..+++++|++|+.|++
T Consensus 287 ~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~ 365 (447)
T 3dw8_B 287 SISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNF 365 (447)
T ss_dssp CEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTE
T ss_pred eEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCE
Confidence 8999976 6999999999 999999974 788999999975332 33479999999999999
Q ss_pred eeeeeccCC
Q 001123 520 IRGWNVTSP 528 (1149)
Q Consensus 520 IRlWdl~sp 528 (1149)
|++||+.+.
T Consensus 366 v~iwd~~~~ 374 (447)
T 3dw8_B 366 FRMFDRNTK 374 (447)
T ss_dssp EEEEETTTC
T ss_pred EEEEEcCCC
Confidence 999998764
No 80
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.95 E-value=1.6e-26 Score=258.80 Aligned_cols=269 Identities=10% Similarity=0.094 Sum_probs=206.4
Q ss_pred eEEEEEee--CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCC-EEEEE
Q 001123 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG-VVWSG 209 (1149)
Q Consensus 134 ~l~~l~~~--~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~-~LaSG 209 (1149)
.+..++.. ...+++ +.|++|+|||+.++..... ......| ..+|.+++|+|+++ +|++|
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~----------------~~~~~~~-~~~v~~~~~~~~~~~~l~~~ 75 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRY-KHPLLCCNFIDNTDLQIYVG 75 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE----------------EEEEEEC-SSCEEEEEEEESSSEEEEEE
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccc----------------ceeeeec-CCceEEEEECCCCCcEEEEE
Confidence 45555554 556665 5699999999886552111 0111123 78999999999999 99999
Q ss_pred eCCCeEEEEEC-CCCCCCCCCCccceEEeec--CCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCC---------cceee
Q 001123 210 HRDGRIMCWKM-NARLLDSDDGFGEVLSWQA--HRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA---------IEKAL 276 (1149)
Q Consensus 210 S~DGtIRvWdl-~~g~~~~~~~~~~~~~l~G--H~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t---------~~~~~ 276 (1149)
+.||+|++||+ .++. ...+.+ |.+.|++++|+| +. |++|+.|++|++||+.+ ++...
T Consensus 76 ~~dg~i~~wd~~~~~~---------~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 145 (342)
T 1yfq_A 76 TVQGEILKVDLIGSPS---------FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN 145 (342)
T ss_dssp ETTSCEEEECSSSSSS---------EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred cCCCeEEEEEeccCCc---------eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeee
Confidence 99999999999 8754 567889 999999999999 65 89999999999999865 22111
Q ss_pred ecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCC-ccEEEEEecCCcee
Q 001123 277 SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDART-RELLKVFNIDGQIE 355 (1149)
Q Consensus 277 ~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~T-G~~L~~l~~~g~~~ 355 (1149)
.+. ....+.++++++++ .+.++.+++|++||+++ +......
T Consensus 146 ~~~------------------------------~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~------- 187 (342)
T 1yfq_A 146 NTK------------------------------VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTI------- 187 (342)
T ss_dssp SSS------------------------------SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEE-------
T ss_pred EEe------------------------------eCCceEEEEecCCc-EEEEeCCCeEEEEECCcccccccee-------
Confidence 110 12456777777765 44455677999999886 4321000
Q ss_pred eEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcC-CCc-E
Q 001123 356 NRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI-DGM-I 433 (1149)
Q Consensus 356 ~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~-Dg~-l 433 (1149)
. ...+...+.+++++| ++. +
T Consensus 188 ---------------------~-------------------------------------~~~~~~~i~~i~~~~~~~~~l 209 (342)
T 1yfq_A 188 ---------------------E-------------------------------------ESGLKYQIRDVALLPKEQEGY 209 (342)
T ss_dssp ---------------------E-------------------------------------ECSCSSCEEEEEECSGGGCEE
T ss_pred ---------------------e-------------------------------------ecCCCCceeEEEECCCCCCEE
Confidence 0 112334567788898 765 8
Q ss_pred EEEeCCCeEEEEeC-CC------CeeEeeecCCc---------cEEEEEe--cCCEEEEeecCcEEEEEeCC-Cceeeee
Q 001123 434 WTGGANGLLLQWDP-NG------NRLQDFQYLPF---------AVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGW 494 (1149)
Q Consensus 434 aSgs~DgtIrlWD~-tG------~~l~tl~gH~~---------~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l 494 (1149)
++|+.||+|++||. .+ +++..+.+|.. .|.++++ +|++|++|+.||+|++||+. ++++..+
T Consensus 210 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 289 (342)
T 1yfq_A 210 ACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289 (342)
T ss_dssp EEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred EEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhh
Confidence 89999999999999 44 78889998865 9999976 68999999999999999986 8899999
Q ss_pred ecc-CCCeEEEEecCCeEEeecCCCc-eeeeec
Q 001123 495 VAH-SSPVIKMAVGAGYIFTLANHGG-IRGWNV 525 (1149)
Q Consensus 495 ~gH-~~~V~sLa~Dg~~LaSgS~Dgt-IRlWdl 525 (1149)
.+| .++|.++++++++|+++|.|++ .+.|..
T Consensus 290 ~~~h~~~v~~~~~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 290 AKFNEDSVVKIACSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp CCCSSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred hcccCCCceEecCCCCeEEEEecCCcccccccc
Confidence 999 9999999999999999999999 887775
No 81
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.95 E-value=7.6e-27 Score=269.28 Aligned_cols=281 Identities=11% Similarity=0.057 Sum_probs=190.6
Q ss_pred ccceeEEEEEee-CCeEEE-eC--------CCCEEEEeCCCCCCCCccccccccCCCCCCCCCCcee-eeec-CCceEEE
Q 001123 130 QIGCFLRTIVCT-EEQLWA-GG--------ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKE-SVKG-VSSVMCM 197 (1149)
Q Consensus 130 ~~~~~l~~l~~~-~~~l~a-g~--------D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~-s~~G-~~~V~~l 197 (1149)
+.|..+.+++.. ++++++ |+ ++.||+|++......... .+ ....+ .+.+ ...|.|+
T Consensus 12 ~~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~---~~---------~~~~~~~l~~~~~~v~s~ 79 (365)
T 4h5i_A 12 NVGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE---QF---------HILSEFALEDNDDSPTAI 79 (365)
T ss_dssp ECSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH---HE---------EEEEEEECCTTSCCCCEE
T ss_pred CCCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceee---ee---------eeeeEEEccCCCCceEEE
Confidence 467778888876 556655 32 234999998765432110 00 00000 1222 5567777
Q ss_pred EEcCC---------CCEEEEEeCCCeEEEEECCCCCCCCCCCccceEE-----eecCCCCEEEEEEeCCCc-EE--EEEC
Q 001123 198 VGDEA---------SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLS-----WQAHRGPVLSLCISSYGD-LW--SGSE 260 (1149)
Q Consensus 198 afs~d---------g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~-----l~GH~~~VtsVafSpdG~-L~--SGS~ 260 (1149)
+++.+ +..|++|+.|++||+|++.++.. ....... ..+|...|.+|+|||||+ |+ ||+.
T Consensus 80 ~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~ 155 (365)
T 4h5i_A 80 DASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVND----QLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKV 155 (365)
T ss_dssp EEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTT----EEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCS
T ss_pred EeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCc----eEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCC
Confidence 76542 23344556789999999876431 1111111 124566799999999998 44 6668
Q ss_pred CCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcC
Q 001123 261 GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDAR 340 (1149)
Q Consensus 261 DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~ 340 (1149)
|++|||||+++++....+. | ..+|..+++++++..+++++++++++|+..
T Consensus 156 d~~i~iwd~~~~~~~~~~~--------------------~----------~~~V~~v~fspdg~~l~s~s~~~~~~~~~~ 205 (365)
T 4h5i_A 156 PAIMRIIDPSDLTEKFEIE--------------------T----------RGEVKDLHFSTDGKVVAYITGSSLEVISTV 205 (365)
T ss_dssp SCEEEEEETTTTEEEEEEE--------------------C----------SSCCCEEEECTTSSEEEEECSSCEEEEETT
T ss_pred CCEEEEeECCCCcEEEEeC--------------------C----------CCceEEEEEccCCceEEeccceeEEEEEec
Confidence 9999999998866543221 1 256788899999999999999999999999
Q ss_pred CccEEEEE--ecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCc----EEEEee---
Q 001123 341 TRELLKVF--NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA----VRRVAA--- 411 (1149)
Q Consensus 341 TG~~L~~l--~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~----v~rv~~--- 411 (1149)
+++.+... ..+...+.++.+++ ++..+++++.++ ..+.++
T Consensus 206 ~~~~~~~~~~~~~~~~v~~v~fsp-------------------------------dg~~l~~~s~d~~~~~~i~~~~~~~ 254 (365)
T 4h5i_A 206 TGSCIARKTDFDKNWSLSKINFIA-------------------------------DDTVLIAASLKKGKGIVLTKISIKS 254 (365)
T ss_dssp TCCEEEEECCCCTTEEEEEEEEEE-------------------------------TTEEEEEEEESSSCCEEEEEEEEET
T ss_pred cCcceeeeecCCCCCCEEEEEEcC-------------------------------CCCEEEEEecCCcceeEEeeccccc
Confidence 98876543 23444444444444 443333333322 112221
Q ss_pred -------cccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEee-ecCCccEEEEEe--cCCEEEEeecCc
Q 001123 412 -------KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDF-QYLPFAVQCLCT--FGSQIWVGYMNG 479 (1149)
Q Consensus 412 -------~g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl-~gH~~~V~sls~--dG~~LaSGs~DG 479 (1149)
...+.+|...|.+++++|||+ ||+|+.|++|+|||+ +|++++++ .+|..+|+++++ ||++|||||.|+
T Consensus 255 ~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~ 334 (365)
T 4h5i_A 255 GNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAAN 334 (365)
T ss_dssp TEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTS
T ss_pred ceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCC
Confidence 123567888999999999997 789999999999999 89999885 789999999976 799999999999
Q ss_pred EEEEEeCC
Q 001123 480 IVQVLDLE 487 (1149)
Q Consensus 480 tIrlWD~~ 487 (1149)
+|||||+.
T Consensus 335 tvrvw~ip 342 (365)
T 4h5i_A 335 TIHIIKLP 342 (365)
T ss_dssp EEEEEECC
T ss_pred eEEEEEcC
Confidence 99999974
No 82
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.95 E-value=3e-26 Score=285.70 Aligned_cols=245 Identities=19% Similarity=0.215 Sum_probs=191.6
Q ss_pred eec-CCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcE
Q 001123 188 VKG-VSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGI 264 (1149)
Q Consensus 188 ~~G-~~~V~~lafs~dg-~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTI 264 (1149)
+.| .+.|.||+|++++ .+|+|||.||+||+|++..+.. ........+.||.+.|++|+|+|+|+ |+|||.|++|
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~---~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v 454 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDK---AYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL 454 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTT---CSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCc---ccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence 334 8999999999875 7999999999999999976431 11123457899999999999999998 7899999999
Q ss_pred EEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCcc
Q 001123 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE 343 (1149)
Q Consensus 265 RVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~ 343 (1149)
||||+.++.....+. +| ...|.++++++++..+++++ |++|++||.....
T Consensus 455 ~vwd~~~~~~~~~~~-------------------~h----------~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~ 505 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFV-------------------GH----------TKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC 505 (694)
T ss_dssp EEEETTTTEEEEEEE-------------------CC----------SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE
T ss_pred EEEECCCCcceeEEe-------------------CC----------CCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc
Confidence 999998765433221 22 25688889999888888775 6889999975422
Q ss_pred EEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceE
Q 001123 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (1149)
Q Consensus 344 ~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ 423 (1149)
. ..+. ....+|...|.
T Consensus 506 ~-~~~~---------------------------------------------------------------~~~~~h~~~v~ 521 (694)
T 3dm0_A 506 K-YTIS---------------------------------------------------------------EGGEGHRDWVS 521 (694)
T ss_dssp E-EEEC---------------------------------------------------------------SSTTSCSSCEE
T ss_pred c-eeec---------------------------------------------------------------cCCCCCCCcEE
Confidence 1 1110 00234556788
Q ss_pred EEEEcCCC---cEEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-Cceeeeeec
Q 001123 424 ALTTSIDG---MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVA 496 (1149)
Q Consensus 424 ava~s~Dg---~laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l~g 496 (1149)
++.++|++ .+++|+.|++|++||+ +++++.++.+|...|+++++ +|++|++|+.||+|+|||+. ++++..+..
T Consensus 522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~ 601 (694)
T 3dm0_A 522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA 601 (694)
T ss_dssp EEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC
T ss_pred EEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC
Confidence 88899886 4899999999999999 78999999999999999976 69999999999999999975 788887765
Q ss_pred cCCCeEEEE--ecCCeEEeecCCCceeeeeccCCCC
Q 001123 497 HSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSPGP 530 (1149)
Q Consensus 497 H~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~sp~p 530 (1149)
| ..|.+++ +++.++++ +.|+.|++||+.+...
T Consensus 602 ~-~~v~~~~~sp~~~~l~~-~~~~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 602 N-SVIHALCFSPNRYWLCA-ATEHGIKIWDLESKSI 635 (694)
T ss_dssp S-SCEEEEEECSSSSEEEE-EETTEEEEEETTTTEE
T ss_pred C-CcEEEEEEcCCCcEEEE-EcCCCEEEEECCCCCC
Confidence 4 5788887 46666655 4577799999976443
No 83
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.95 E-value=4.7e-26 Score=267.18 Aligned_cols=229 Identities=18% Similarity=0.257 Sum_probs=186.5
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
...|.|+++ ++++|++|+.||+|++||+.++. ....+.||.++|++++| ++. |+||+.||+|++||+
T Consensus 133 ~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~--------~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 133 SKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE--------CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV 200 (435)
T ss_dssp CCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC--------EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred CCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe--------EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEEC
Confidence 567899887 78999999999999999998865 36788999999999999 455 899999999999999
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEe-cCCceEEEEcCCccEEEEE
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVF 348 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sa-sd~tIrLWD~~TG~~L~~l 348 (1149)
.+++....+.. | ...+.++.+++ ..++++ .|++|++||+.+++.+...
T Consensus 201 ~~~~~~~~~~~-------------------h----------~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~ 249 (435)
T 1p22_A 201 NTGEMLNTLIH-------------------H----------CEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLR 249 (435)
T ss_dssp SSCCEEEEECC-------------------C----------CSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEE
T ss_pred CCCcEEEEEcC-------------------C----------CCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceee
Confidence 88765443322 1 13455666543 355555 4688999999876533110
Q ss_pred ecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEc
Q 001123 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (1149)
Q Consensus 349 ~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s 428 (1149)
. .+.+|...|.++.+
T Consensus 250 ~----------------------------------------------------------------~~~~~~~~v~~~~~- 264 (435)
T 1p22_A 250 R----------------------------------------------------------------VLVGHRAAVNVVDF- 264 (435)
T ss_dssp E----------------------------------------------------------------EECCCSSCEEEEEE-
T ss_pred e----------------------------------------------------------------EecCCCCcEEEEEe-
Confidence 0 02234445556666
Q ss_pred CCCcEEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEecCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEEEEe
Q 001123 429 IDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV 506 (1149)
Q Consensus 429 ~Dg~laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa~ 506 (1149)
.+..+++|+.||+|++||+ +++++.++.+|...|.++.+++++|++|+.||+|++||+. |+++..+.+|.+.|.++++
T Consensus 265 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 344 (435)
T 1p22_A 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 344 (435)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC
T ss_pred CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe
Confidence 3345899999999999999 7999999999999999999999999999999999999976 8999999999999999999
Q ss_pred cCCeEEeecCCCceeeeeccC
Q 001123 507 GAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 507 Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
++++|++|+.||+|++||+..
T Consensus 345 ~~~~l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 345 DNKRIVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp CSSEEEEEETTSCEEEEEHHH
T ss_pred cCCEEEEEeCCCcEEEEECCC
Confidence 999999999999999999854
No 84
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.95 E-value=6.8e-25 Score=244.92 Aligned_cols=276 Identities=17% Similarity=0.185 Sum_probs=199.8
Q ss_pred cceeEEEEEee--CC-eEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCCE
Q 001123 131 IGCFLRTIVCT--EE-QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGV 205 (1149)
Q Consensus 131 ~~~~l~~l~~~--~~-~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~~ 205 (1149)
+...+..|+.+ .. .|++ |.|++|||||+.+...... . ....+.| ..+|.+++|+|+|++
T Consensus 37 H~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~---------------~-~~~~l~~h~~~V~~~~~s~dg~~ 100 (340)
T 4aow_A 37 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG---------------I-PQRALRGHSHFVSDVVISSDGQF 100 (340)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE---------------E-EEEEECCCSSCEEEEEECTTSSE
T ss_pred ccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc---------------e-eeEEEeCCCCCEEEEEECCCCCE
Confidence 44577788876 23 4554 5699999999886543221 0 1112334 789999999999999
Q ss_pred EEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcce
Q 001123 206 VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERH 284 (1149)
Q Consensus 206 LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~ 284 (1149)
|+||+.|+.|++|+..... .......|...+..+.+++++. |+||+.|+.+++||+.........
T Consensus 101 l~s~~~d~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~------ 166 (340)
T 4aow_A 101 ALSGSWDGTLRLWDLTTGT--------TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ------ 166 (340)
T ss_dssp EEEEETTSEEEEEETTTTE--------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC------
T ss_pred EEEEcccccceEEeecccc--------eeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEE------
Confidence 9999999999999998754 3556678899999999999987 899999999999998654322111
Q ss_pred eeEEEeeeccccccccccccceeeeecCCeEEEEEcCCC--CEEEEe-cCCceEEEEcCCccEEEEEecCCceeeEEeec
Q 001123 285 TAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR--AKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMS 361 (1149)
Q Consensus 285 ~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~--~~v~Sa-sd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S 361 (1149)
..+| ...+..+++..+. ..++++ .|++|++||+++++++..+.+|...+.
T Consensus 167 ------------~~~~----------~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~----- 219 (340)
T 4aow_A 167 ------------DESH----------SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLN----- 219 (340)
T ss_dssp ------------SSSC----------SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-----
T ss_pred ------------eccc----------cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEE-----
Confidence 0111 1334455554432 344554 468899999999999888876654433
Q ss_pred cCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeeccc-----ccCCCCceEEEEEcCCCcEEEE
Q 001123 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG-----FGDDNRRTEALTTSIDGMIWTG 436 (1149)
Q Consensus 362 ~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~-----~~~~~~~V~ava~s~Dg~laSg 436 (1149)
++.|.+++..+++|+.|+..++|+... ...+...+.++.++|++.++++
T Consensus 220 --------------------------~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 273 (340)
T 4aow_A 220 --------------------------TVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCA 273 (340)
T ss_dssp --------------------------EEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEE
T ss_pred --------------------------EEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeec
Confidence 344555566677777777777776221 1233457889999999999999
Q ss_pred eCCCeEEEEeC-CCCeeEee---------ecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-Cc
Q 001123 437 GANGLLLQWDP-NGNRLQDF---------QYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GN 489 (1149)
Q Consensus 437 s~DgtIrlWD~-tG~~l~tl---------~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~ 489 (1149)
+.|++|++||+ ++.++..+ .+|...|+++++ +|++|++|+.||+|+|||++ |.
T Consensus 274 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 274 ATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred cCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999999999 55565554 368889999876 79999999999999999975 53
No 85
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.95 E-value=1.8e-25 Score=281.04 Aligned_cols=272 Identities=15% Similarity=0.157 Sum_probs=218.6
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
.+.|.|++|+|+|++||+|+.||+|++||+.++. ...++.+|.++|++++|+|+|+ |++|+.||+|+|||+
T Consensus 13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~--------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 84 (814)
T 3mkq_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV--------EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (814)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE--------EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc--------eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 8899999999999999999999999999998864 4678899999999999999997 899999999999999
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCc-cEEEE
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR-ELLKV 347 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG-~~L~~ 347 (1149)
.+++....+.. | ...+.++++++++..+++++ +++|++||+.++ .+...
T Consensus 85 ~~~~~~~~~~~-------------------~----------~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 135 (814)
T 3mkq_A 85 NTGEKVVDFEA-------------------H----------PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT 135 (814)
T ss_dssp TTCCEEEEEEC-------------------C----------SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE
T ss_pred CCCcEEEEEec-------------------C----------CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE
Confidence 88764433321 2 25678888999888888766 578999999987 66667
Q ss_pred EecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeec-cccceEeecCCcEEEEeecc------ccc-CCC
Q 001123 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQ-RSRNAIMGAADAVRRVAAKG------GFG-DDN 419 (1149)
Q Consensus 348 l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~-~~~~~i~G~~d~v~rv~~~g------~~~-~~~ 419 (1149)
+.++...+.. +.|.+ ++..++++..++..++|+.. .+. .+.
T Consensus 136 ~~~~~~~v~~-------------------------------~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~ 184 (814)
T 3mkq_A 136 FEGHEHFVMC-------------------------------VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184 (814)
T ss_dssp EECCSSCEEE-------------------------------EEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCT
T ss_pred EcCCCCcEEE-------------------------------EEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCC
Confidence 7665544333 34444 44556677777777776521 222 333
Q ss_pred CceEEEEEcC--CCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-Cceee
Q 001123 420 RRTEALTTSI--DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLG 492 (1149)
Q Consensus 420 ~~V~ava~s~--Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~ 492 (1149)
..+.++.++| ++. +++|+.||+|++||+ +++++.++.+|...|.++++ +|++|++|+.||+|++||+. ++++.
T Consensus 185 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~ 264 (814)
T 3mkq_A 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264 (814)
T ss_dssp TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEE
T ss_pred CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 6788999988 765 889999999999999 78999999999999998875 68999999999999999976 88999
Q ss_pred eeeccCCCeEEEEe--cCCe-EEeecCCCceeeeeccCCCC
Q 001123 493 GWVAHSSPVIKMAV--GAGY-IFTLANHGGIRGWNVTSPGP 530 (1149)
Q Consensus 493 ~l~gH~~~V~sLa~--Dg~~-LaSgS~DgtIRlWdl~sp~p 530 (1149)
.+..|...|.++++ +++. +++++.|+.+.+|++....+
T Consensus 265 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (814)
T 3mkq_A 265 TLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP 305 (814)
T ss_dssp EECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSC
T ss_pred EeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCc
Confidence 99999999999984 6653 35556688899999865443
No 86
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=9.5e-27 Score=270.72 Aligned_cols=257 Identities=10% Similarity=-0.011 Sum_probs=159.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeC--------CCc-EEEEECCCcE
Q 001123 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS--------YGD-LWSGSEGGGI 264 (1149)
Q Consensus 194 V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSp--------dG~-L~SGS~DgTI 264 (1149)
+....+++++.+||||+.|++||+||+.++.+ ........+.||++.|++|+|+| ||+ |+|||.|+||
T Consensus 92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~---~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv 168 (393)
T 4gq1_A 92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETI---ITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTL 168 (393)
T ss_dssp -----CCEEEEEEEEEETTSCEEEEEEETTEE---EEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEE
T ss_pred cceeecCCCCCEEEEEeCCCcEEEEECCCCcc---ceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeE
Confidence 34445566778999999999999999987642 00111234689999999999998 676 7999999999
Q ss_pred EEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCC-EEEEec-CCceEEEEcCCc
Q 001123 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTR 342 (1149)
Q Consensus 265 RVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~-~v~Sas-d~tIrLWD~~TG 342 (1149)
||||+.++.+...+. . ....+.++++.+++. ++++++ |++|++||++++
T Consensus 169 ~~Wd~~~~~~~~~~~-------------------~----------~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~ 219 (393)
T 4gq1_A 169 IIWRLTDEGPILAGY-------------------P----------LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLN 219 (393)
T ss_dssp EEEEEETTEEEEEEE-------------------E----------CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCC
T ss_pred EEEECCCCceeeeec-------------------C----------CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCC
Confidence 999997654433221 1 125677888888764 566654 688999999998
Q ss_pred cEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCce
Q 001123 343 ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (1149)
Q Consensus 343 ~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V 422 (1149)
+....+..+..... . +.+.. .+.+.. . .....+|...+
T Consensus 220 ~~~~~~~~~~~~~~--------~---------~~~s~----------~~~~~~----~-----------~~~~~~~~~~v 257 (393)
T 4gq1_A 220 LSAEENSQTELVKN--------P---------WLLTL----------NTLPLV----N-----------TCHSSGIASSL 257 (393)
T ss_dssp C----------CSC--------C---------CSEEE----------ESGGGC---------------------CCSSSC
T ss_pred cccccccccCCccc--------c---------eEEec----------ccccce----e-----------eeecccccccc
Confidence 87655432221100 0 00000 000000 0 00123455667
Q ss_pred EEEEEc-CCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe----------------------cCCEEEEeec
Q 001123 423 EALTTS-IDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT----------------------FGSQIWVGYM 477 (1149)
Q Consensus 423 ~ava~s-~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~----------------------dG~~LaSGs~ 477 (1149)
.++.++ +||. |++++.|+++++||+ +++....+..|...+..+.+ ++.++++|+.
T Consensus 258 ~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~ 337 (393)
T 4gq1_A 258 ANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQ 337 (393)
T ss_dssp SEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETT
T ss_pred eeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECC
Confidence 777764 7776 889999999999999 67777777766655543311 3457889999
Q ss_pred CcEEEEEeCC-CceeeeeeccCCCeEEEE--ecCCeEEeecCCCceeeeec
Q 001123 478 NGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 478 DGtIrlWD~~-G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl 525 (1149)
||+|+|||++ |+++..+.+|..+|.+|+ +||++||+++.|| +.+|.+
T Consensus 338 Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 338 HGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp TTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 9999999976 888888999999999998 5999999998765 556654
No 87
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.94 E-value=1.9e-25 Score=258.62 Aligned_cols=268 Identities=14% Similarity=0.104 Sum_probs=192.9
Q ss_pred eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCC
Q 001123 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLD 226 (1149)
Q Consensus 148 g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~-dg~~LaSGS~DGtIRvWdl~~g~~~ 226 (1149)
+.||.|+||++.+...... ....+ ..| .++|.+++|+| ++.+|+||+.||+|++||+.++...
T Consensus 54 ~~~g~i~v~~~~~~~~~~~-------------~~~~~--~~h-~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~ 117 (402)
T 2aq5_A 54 SGGGAFLVLPLGKTGRVDK-------------NVPLV--CGH-TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV 117 (402)
T ss_dssp SSSCCEEEEETTCCEECCT-------------TCCCB--CCC-SSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS
T ss_pred cCCCEEEEEECccCCCCCC-------------CCceE--ecC-CCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc
Confidence 5699999999864321100 00001 123 78999999999 8999999999999999999876320
Q ss_pred CCCCccceEEeecCCCCEEEEEEeCCC-c-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeecccccccccccc
Q 001123 227 SDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (1149)
Q Consensus 227 ~~~~~~~~~~l~GH~~~VtsVafSpdG-~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~ 304 (1149)
.........+.+|.+.|++|+|+|++ . |+||+.|++|++||+.+++....+.. .+|
T Consensus 118 -~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----------------~~~---- 175 (402)
T 2aq5_A 118 -LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP-----------------DVH---- 175 (402)
T ss_dssp -SCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT-----------------TTC----
T ss_pred -cccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec-----------------CCC----
Confidence 01113467789999999999999998 3 78999999999999987665433310 111
Q ss_pred ceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEE-ecCCceeeEEeeccCCCccccccceeeEEecCCC
Q 001123 305 GFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF-NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKK 382 (1149)
Q Consensus 305 g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l-~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k 382 (1149)
...+.++++++++..+++++ |++|++||+++++++..+ ..+..
T Consensus 176 ------~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----------------------------- 220 (402)
T 2aq5_A 176 ------PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEG----------------------------- 220 (402)
T ss_dssp ------CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCS-----------------------------
T ss_pred ------CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCC-----------------------------
Confidence 25677888888888787765 688999999998877665 22211
Q ss_pred CccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEE---eCCCeEEEEeC-CCCe-eEeee
Q 001123 383 DKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTG---GANGLLLQWDP-NGNR-LQDFQ 456 (1149)
Q Consensus 383 ~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSg---s~DgtIrlWD~-tG~~-l~tl~ 456 (1149)
..+.++++++++. +++| +.|++|++||+ +++. +....
T Consensus 221 -------------------------------------~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~ 263 (402)
T 2aq5_A 221 -------------------------------------TRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE 263 (402)
T ss_dssp -------------------------------------SSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE
T ss_pred -------------------------------------CcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe
Confidence 0133556788887 5566 68999999999 5543 44333
Q ss_pred -cCCccEEEEEe--cCCEEE-EeecCcEEEEEeCC-Cce-eeeeecc--CCCeEEEEe--cCCeEEeecCCCceeeeecc
Q 001123 457 -YLPFAVQCLCT--FGSQIW-VGYMNGIVQVLDLE-GNL-LGGWVAH--SSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 457 -gH~~~V~sls~--dG~~La-SGs~DGtIrlWD~~-G~~-l~~l~gH--~~~V~sLa~--Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
.|...|.++++ +|++|+ +|+.||+|++||+. ++. +..+.+| .+.|.++++ ++.+++ +.|+.+|+|++.
T Consensus 264 ~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~--s~~~~~~~~~l~ 341 (402)
T 2aq5_A 264 LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEV--NKCEIARFYKLH 341 (402)
T ss_dssp CCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCG--GGTEEEEEEEEE
T ss_pred ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccce--ecceeEEEEEcC
Confidence 46677888765 688886 56689999999976 552 5666555 589999984 666665 467799999986
Q ss_pred C
Q 001123 527 S 527 (1149)
Q Consensus 527 s 527 (1149)
+
T Consensus 342 ~ 342 (402)
T 2aq5_A 342 E 342 (402)
T ss_dssp T
T ss_pred C
Confidence 4
No 88
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.94 E-value=7.3e-26 Score=254.57 Aligned_cols=239 Identities=13% Similarity=0.146 Sum_probs=189.7
Q ss_pred CCceEEEEEcCC----CCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeec-----CCCCEEEEEEeCC----Cc-EE
Q 001123 191 VSSVMCMVGDEA----SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA-----HRGPVLSLCISSY----GD-LW 256 (1149)
Q Consensus 191 ~~~V~~lafs~d----g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~G-----H~~~VtsVafSpd----G~-L~ 256 (1149)
.++|.|++|+|+ ...+++++.|+.|++||+.++. ....+++ |.+.|++++|+|+ |. |+
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 89 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQG--------EIRLLQSYVDADADENFYTCAWTYDSNTSHPLLA 89 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGG--------CEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCc--------EEEeeeeccccCCCCcEEEEEeccCCCCCCCEEE
Confidence 789999999984 5667777777799999998654 2444443 5688999999999 55 79
Q ss_pred EEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcC-CCCEEEEec-CCce
Q 001123 257 SGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSF 334 (1149)
Q Consensus 257 SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~-~~~~v~Sas-d~tI 334 (1149)
+|+.||+|++||+.+++....+. +| ...+.++++++ ++..+++++ +++|
T Consensus 90 ~~~~dg~i~v~d~~~~~~~~~~~-------------------~~----------~~~i~~~~~~~~~~~~l~s~~~dg~i 140 (366)
T 3k26_A 90 VAGSRGIIRIINPITMQCIKHYV-------------------GH----------GNAINELKFHPRDPNLLLSVSKDHAL 140 (366)
T ss_dssp EEETTCEEEEECTTTCCEEEEEE-------------------SC----------CSCEEEEEECSSCTTEEEEEETTSCE
T ss_pred EecCCCEEEEEEchhceEeeeec-------------------CC----------CCcEEEEEECCCCCCEEEEEeCCCeE
Confidence 99999999999998765433221 12 25678888888 777888766 6789
Q ss_pred EEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeeccc
Q 001123 335 ALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG 414 (1149)
Q Consensus 335 rLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~ 414 (1149)
++||+++++.+..+..
T Consensus 141 ~iwd~~~~~~~~~~~~---------------------------------------------------------------- 156 (366)
T 3k26_A 141 RLWNIQTDTLVAIFGG---------------------------------------------------------------- 156 (366)
T ss_dssp EEEETTTTEEEEEECS----------------------------------------------------------------
T ss_pred EEEEeecCeEEEEecc----------------------------------------------------------------
Confidence 9999998876655421
Q ss_pred ccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeec----------------------------CCccEEE
Q 001123 415 FGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQY----------------------------LPFAVQC 464 (1149)
Q Consensus 415 ~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~g----------------------------H~~~V~s 464 (1149)
+..|...|.+++++|++. +++|+.||+|++||+ +++++..+.. |...|.+
T Consensus 157 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (366)
T 3k26_A 157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDC 236 (366)
T ss_dssp TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCE
T ss_pred cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEE
Confidence 223445677888999876 889999999999999 5665554443 9999999
Q ss_pred EEecCCEEEEeecCcEEEEEeCC-Cc--------------eeeeeeccCCCeEEEE--ec--CCeEEeecCCCceeeeec
Q 001123 465 LCTFGSQIWVGYMNGIVQVLDLE-GN--------------LLGGWVAHSSPVIKMA--VG--AGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 465 ls~dG~~LaSGs~DGtIrlWD~~-G~--------------~l~~l~gH~~~V~sLa--~D--g~~LaSgS~DgtIRlWdl 525 (1149)
++++|++|++|+.||.|++||+. ++ ++..+.+|...|.+++ ++ +++|++++.|++|++||+
T Consensus 237 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~ 316 (366)
T 3k26_A 237 VRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDL 316 (366)
T ss_dssp EEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEEC
T ss_pred EEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEEC
Confidence 99999999999999999999965 32 3788999999999887 57 999999999999999998
Q ss_pred cCCCC
Q 001123 526 TSPGP 530 (1149)
Q Consensus 526 ~sp~p 530 (1149)
....+
T Consensus 317 ~~~~~ 321 (366)
T 3k26_A 317 EVEDP 321 (366)
T ss_dssp CSSSG
T ss_pred CCCCC
Confidence 76443
No 89
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.94 E-value=4e-25 Score=246.43 Aligned_cols=238 Identities=11% Similarity=0.161 Sum_probs=169.6
Q ss_pred eeEEEEEee--CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCC--CCEE
Q 001123 133 CFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEA--SGVV 206 (1149)
Q Consensus 133 ~~l~~l~~~--~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~d--g~~L 206 (1149)
..++.++.. ++.|.+ +.|++|||||+++.... . ...+.| .++|.+++|+++ |.+|
T Consensus 10 ~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~-~------------------~~~l~gH~~~V~~v~~s~~~~g~~l 70 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK-L------------------IDTLTGHEGPVWRVDWAHPKFGTIL 70 (297)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC-C------------------CEEECCCSSCEEEEEECCGGGCSEE
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE-E------------------EEEEccccCCeEEEEecCCCcCCEE
Confidence 356666665 556665 56999999998743211 0 111334 889999999864 8999
Q ss_pred EEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCC--Cc-EEEEECCCcEEEEeCCCccee--eecCCC
Q 001123 207 WSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEAIEKA--LSLKPE 281 (1149)
Q Consensus 207 aSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpd--G~-L~SGS~DgTIRVWdl~t~~~~--~~l~~~ 281 (1149)
+||+.||+||+||+.++.. .....+.+|.++|++|+|+|+ |. |++||.|++||+||+.+.... ..+.
T Consensus 71 ~s~s~D~~v~iWd~~~~~~------~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~-- 142 (297)
T 2pm7_B 71 ASCSYDGKVMIWKEENGRW------SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIID-- 142 (297)
T ss_dssp EEEETTTEEEEEEBSSSCB------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEE--
T ss_pred EEEcCCCEEEEEEcCCCce------EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeee--
Confidence 9999999999999987642 235678899999999999997 65 899999999999999764211 1111
Q ss_pred cceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCC-------------CCEEEEec-CCceEEEEcCCccEEEE
Q 001123 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-------------RAKVWSAG-FLSFALWDARTRELLKV 347 (1149)
Q Consensus 282 ~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~-------------~~~v~Sas-d~tIrLWD~~TG~~L~~ 347 (1149)
+|. ..+.+++++++ +..+++++ |++|+|||+++++....
T Consensus 143 -----------------~h~----------~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~ 195 (297)
T 2pm7_B 143 -----------------AHA----------IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV 195 (297)
T ss_dssp -----------------CCS----------SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEE
T ss_pred -----------------ccc----------CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEE
Confidence 111 23444444443 35677665 68899999876541110
Q ss_pred EecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEE
Q 001123 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (1149)
Q Consensus 348 l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~ 427 (1149)
+ ...+.+|...|.++++
T Consensus 196 ~---------------------------------------------------------------~~~l~~H~~~V~~v~~ 212 (297)
T 2pm7_B 196 L---------------------------------------------------------------ESTLEGHSDWVRDVAW 212 (297)
T ss_dssp E---------------------------------------------------------------EEEECCCSSCEEEEEE
T ss_pred E---------------------------------------------------------------EEEecCCCCceEEEEE
Confidence 0 0013456677888899
Q ss_pred cCCC----cEEEEeCCCeEEEEeC-CCC---eeEee--ecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC
Q 001123 428 SIDG----MIWTGGANGLLLQWDP-NGN---RLQDF--QYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 428 s~Dg----~laSgs~DgtIrlWD~-tG~---~l~tl--~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~ 487 (1149)
+|++ .|++|+.|++|+|||+ ++. ....+ .+|...|.++++ +|++||+|+.||+|+||+..
T Consensus 213 sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 213 SPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 9984 4899999999999999 432 22334 568889998875 79999999999999999954
No 90
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.94 E-value=3.7e-25 Score=245.84 Aligned_cols=273 Identities=15% Similarity=0.204 Sum_probs=207.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl 269 (1149)
.++|.+++|+|||++++.+..++.+..|..... .......+|.++|++++|+|+|+ |++++ ||+|++||+
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~ 79 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRH--------ARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDI 79 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCCSE--------EEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEET
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccCCc--------cccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEEC
Confidence 678999999999999999998888877765432 12344568999999999999998 67777 999999999
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCcc--EEE
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE--LLK 346 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~--~L~ 346 (1149)
.+++....+ ..+ ...+ +...+.++++++++..+++++ +++|++||+.+++ ...
T Consensus 80 ~~~~~~~~~-------~~~-------~~~~----------~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 135 (337)
T 1gxr_A 80 SHPGNKSPV-------SQL-------DCLN----------RDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA 135 (337)
T ss_dssp TSTTCCSCS-------EEE-------ECSC----------TTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE
T ss_pred CCCCceeee-------ecc-------cccC----------CCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceee
Confidence 775421111 000 0001 125578888999888887765 6789999999887 444
Q ss_pred EEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec------ccccCCCC
Q 001123 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDDNR 420 (1149)
Q Consensus 347 ~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~------g~~~~~~~ 420 (1149)
.+..+...+ ..+.|.+++..++++..++..++++. ..+..|..
T Consensus 136 ~~~~~~~~i-------------------------------~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~ 184 (337)
T 1gxr_A 136 ELTSSAPAC-------------------------------YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 184 (337)
T ss_dssp EEECSSSCE-------------------------------EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred ecccCCCce-------------------------------EEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccC
Confidence 444443332 23445555556666766666666652 24567888
Q ss_pred ceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCCCceeeeeec
Q 001123 421 RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGWVA 496 (1149)
Q Consensus 421 ~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~G~~l~~l~g 496 (1149)
.+.+++++|++. +++++.|++|++||+ +++++..+. |...|.++++ +|++|++|+.||.|++||+.......+.+
T Consensus 185 ~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~ 263 (337)
T 1gxr_A 185 GASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL 263 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECC
T ss_pred ceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcC
Confidence 999999999986 889999999999999 677777764 6788998875 69999999999999999988555667889
Q ss_pred cCCCeEEEE--ecCCeEEeecCCCceeeeeccCC
Q 001123 497 HSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSP 528 (1149)
Q Consensus 497 H~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~sp 528 (1149)
|.+.|.+++ +++++|++++.|++|++|++.+.
T Consensus 264 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~ 297 (337)
T 1gxr_A 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 297 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred CccceeEEEECCCCCEEEEecCCCcEEEEECCCC
Confidence 999999998 48999999999999999998653
No 91
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.7e-26 Score=280.10 Aligned_cols=236 Identities=12% Similarity=-0.047 Sum_probs=165.8
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCC------Cc-EEEEECCCcEEEEeCCC
Q 001123 199 GDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY------GD-LWSGSEGGGIKIWPWEA 271 (1149)
Q Consensus 199 fs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpd------G~-L~SGS~DgTIRVWdl~t 271 (1149)
.+|++++++||+.|++|++|++.++.+ ......++.+|.+.|++|+|+|+ +. |+|||.||+|||||+.+
T Consensus 169 ~~~~~~~laS~s~D~tI~iWd~~~~~~----~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~ 244 (524)
T 2j04_B 169 LNEHLEMFDKEKHSSCIQIFKMNTSTL----HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIID 244 (524)
T ss_dssp -------------CEEEEEEEEETTTC----CEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCC
T ss_pred cchhhhhhccCCCCceEEEEEccCCCC----CceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCC
Confidence 367788999999999999999987652 01112457789999999999997 34 89999999999999976
Q ss_pred cceee--ecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEe-cCCceEEEEcCCccE-EEE
Q 001123 272 IEKAL--SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTREL-LKV 347 (1149)
Q Consensus 272 ~~~~~--~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sa-sd~tIrLWD~~TG~~-L~~ 347 (1149)
+.... .+... .. ...+.+| ...+.++++.+++ .|+++ .|++|++||+++++. +.+
T Consensus 245 ~~~~~~~~~~~~-~p---------~~~l~~h----------~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~ 303 (524)
T 2j04_B 245 NATDVHVFKMCE-KP---------SLTLSLA----------DSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFY 303 (524)
T ss_dssp CSSSSSEEECCC-SC---------SEEECCT----------TTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEE
T ss_pred Cccccccceeec-Cc---------eEEEEcC----------CCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEE
Confidence 43210 00000 00 0011222 2567888887654 56665 478999999986531 111
Q ss_pred EecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEE--
Q 001123 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEAL-- 425 (1149)
Q Consensus 348 l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~av-- 425 (1149)
+.+|...|.+|
T Consensus 304 -------------------------------------------------------------------~~~H~~~V~sv~~ 316 (524)
T 2j04_B 304 -------------------------------------------------------------------DQVHDSYILSVST 316 (524)
T ss_dssp -------------------------------------------------------------------EECSSSCEEEEEE
T ss_pred -------------------------------------------------------------------eecccccEEEEEE
Confidence 22344556666
Q ss_pred EEcCCC-c-EEEEeCCCeEEEEeC-CCCeeEeeecCCc--cEEEEEe--cCCEEEEeecCcEEEEEeCC-Cceeeeeecc
Q 001123 426 TTSIDG-M-IWTGGANGLLLQWDP-NGNRLQDFQYLPF--AVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH 497 (1149)
Q Consensus 426 a~s~Dg-~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~--~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH 497 (1149)
+++++| . |+|||.|++|+|||+ +++++.++.+|.. .|+++++ +|+.|++|+.|++|++||+. ++++.++.+|
T Consensus 317 ~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH 396 (524)
T 2j04_B 317 AYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSR 396 (524)
T ss_dssp ECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEEC
T ss_pred EcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecC
Confidence 468876 4 799999999999999 7888888888764 4666654 68999999999999999976 7888899999
Q ss_pred CCCeEEEE--ecCCeEEeecCCCceeeeecc
Q 001123 498 SSPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 498 ~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
.+.|++|+ ++|++|+|||.|++||+||+.
T Consensus 397 ~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 397 ETTITAIGVSRLHPMVLAGSADGSLIITNAA 427 (524)
T ss_dssp SSCEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred CCceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence 99999998 689999999999999999964
No 92
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.94 E-value=4.4e-25 Score=252.73 Aligned_cols=290 Identities=12% Similarity=0.065 Sum_probs=205.3
Q ss_pred cceeEEEEEeeCCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCC----C-
Q 001123 131 IGCFLRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEA----S- 203 (1149)
Q Consensus 131 ~~~~l~~l~~~~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~d----g- 203 (1149)
+...+..|+.+.+.+++ +.|++|++||+.++..... ......+.+ ..+|.|++|+++ |
T Consensus 15 h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~---------------~~~~~~~~~h~~~v~~~~~~~~~~~~g~ 79 (397)
T 1sq9_A 15 HDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENP---------------KDKSYSHFVHKSGLHHVDVLQAIERDAF 79 (397)
T ss_dssp SSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCG---------------GGGEEEEECCTTCEEEEEEEEEEETTTE
T ss_pred hhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccC---------------CCcceEEecCCCcEEEEEEecccccCCc
Confidence 34467777777777766 4699999999987652211 011122334 789999999999 9
Q ss_pred --CEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecC-----CCCEEEEEEe----CCCc--EEEEECCCcEEEEeCC
Q 001123 204 --GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH-----RGPVLSLCIS----SYGD--LWSGSEGGGIKIWPWE 270 (1149)
Q Consensus 204 --~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH-----~~~VtsVafS----pdG~--L~SGS~DgTIRVWdl~ 270 (1149)
.+|++|+.||+|++|++.++.+ ........+.+| .+.|++++|+ |++. |++|+.||+|++||+.
T Consensus 80 ~~~~l~s~~~dg~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 156 (397)
T 1sq9_A 80 ELCLVATTSFSGDLLFYRITREDE---TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH 156 (397)
T ss_dssp EEEEEEEEETTSCEEEEEEEECTT---TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEE
T ss_pred cccEEEEEcCCCCEEEEEccCCcc---cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCC
Confidence 9999999999999999987541 000115677889 5999999999 9885 7899999999999997
Q ss_pred C------cceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCcc
Q 001123 271 A------IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE 343 (1149)
Q Consensus 271 t------~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~ 343 (1149)
+ ++... +.+.. . +.+.. .....+...+.++++++++ .+++++ ++.|++||+++++
T Consensus 157 ~~~~~~~~~~~~-~~~~~----~---------~~~~~---~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~ 218 (397)
T 1sq9_A 157 PFADESNSLTLN-WSPTL----E---------LQGTV---ESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR 218 (397)
T ss_dssp SSSSHHHHTTTC-CCCEE----E---------EEEEE---CCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE
T ss_pred ccccccccceee-ccCcc----e---------eeeee---ccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc
Confidence 6 33211 00000 0 00000 0000123567788888888 777765 5789999999999
Q ss_pred EEEEEec---C---CceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCC---cEEEEeec--
Q 001123 344 LLKVFNI---D---GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD---AVRRVAAK-- 412 (1149)
Q Consensus 344 ~L~~l~~---~---g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d---~v~rv~~~-- 412 (1149)
++..+.. | ...+..+ .|.+++..++++..+ +..++|+.
T Consensus 219 ~~~~~~~~~~h~~~~~~i~~i-------------------------------~~~~~~~~l~~~~~d~~~g~i~i~d~~~ 267 (397)
T 1sq9_A 219 PLYNFESQHSMINNSNSIRSV-------------------------------KFSPQGSLLAIAHDSNSFGCITLYETEF 267 (397)
T ss_dssp EEEEEECCC---CCCCCEEEE-------------------------------EECSSTTEEEEEEEETTEEEEEEEETTT
T ss_pred eeEEEeccccccccCCccceE-------------------------------EECCCCCEEEEEecCCCCceEEEEECCC
Confidence 9988876 4 4333333 444444555555555 55555541
Q ss_pred ----ccccC-------------CCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeee------cC---------
Q 001123 413 ----GGFGD-------------DNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQ------YL--------- 458 (1149)
Q Consensus 413 ----g~~~~-------------~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~------gH--------- 458 (1149)
..+.. |...|.+++++|++. |++|+.||+|++||+ +++++.++. +|
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 347 (397)
T 1sq9_A 268 GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDE 347 (397)
T ss_dssp CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCT
T ss_pred CcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccc
Confidence 13444 788899999999986 789999999999999 789999999 88
Q ss_pred ------CccEEEEEe--cC----------CEEEEeecCcEEEEEeCC
Q 001123 459 ------PFAVQCLCT--FG----------SQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 459 ------~~~V~sls~--dG----------~~LaSGs~DGtIrlWD~~ 487 (1149)
...|+++++ +| ++|++|+.||.|++||++
T Consensus 348 ~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 348 HGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp TSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred ccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 999999976 56 699999999999999975
No 93
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.94 E-value=1.6e-25 Score=252.12 Aligned_cols=238 Identities=11% Similarity=0.111 Sum_probs=167.7
Q ss_pred ceeEEEEEee--CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcC--CCCE
Q 001123 132 GCFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDE--ASGV 205 (1149)
Q Consensus 132 ~~~l~~l~~~--~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~--dg~~ 205 (1149)
...++.++.+ ++.|.+ +.|++|||||+.++.... ...+.| .++|.+++|++ ++.+
T Consensus 13 ~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~-------------------~~~l~gH~~~V~~v~~~~~~~~~~ 73 (316)
T 3bg1_A 13 EDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQIL-------------------IADLRGHEGPVWQVAWAHPMYGNI 73 (316)
T ss_dssp -CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEE-------------------EEEEECCSSCEEEEEECCGGGSSC
T ss_pred cCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEE-------------------EEEEcCCCccEEEEEeCCCCCCCE
Confidence 3456666665 566665 469999999987653211 111334 88999999986 4899
Q ss_pred EEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCC--Cc-EEEEECCCcEEEEeCCCccee---eecC
Q 001123 206 VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEAIEKA---LSLK 279 (1149)
Q Consensus 206 LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpd--G~-L~SGS~DgTIRVWdl~t~~~~---~~l~ 279 (1149)
|+||+.|++|++||+.++.+ .....+.+|.++|++|+|+|+ |. |+|||.|++|++||+.+.... ..+.
T Consensus 74 l~s~s~D~~v~iWd~~~~~~------~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~ 147 (316)
T 3bg1_A 74 LASCSYDRKVIIWREENGTW------EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN 147 (316)
T ss_dssp EEEEETTSCEEEECCSSSCC------CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTT
T ss_pred EEEEECCCEEEEEECCCCcc------eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeec
Confidence 99999999999999987642 345678899999999999998 55 899999999999999764211 1111
Q ss_pred CCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCC-----------------CCEEEEec-CCceEEEEcCC
Q 001123 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-----------------RAKVWSAG-FLSFALWDART 341 (1149)
Q Consensus 280 ~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~-----------------~~~v~Sas-d~tIrLWD~~T 341 (1149)
.+. ..+.+++++++ +..+++++ |++|+|||+++
T Consensus 148 ~h~-----------------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~ 198 (316)
T 3bg1_A 148 AHT-----------------------------IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEE 198 (316)
T ss_dssp SSS-----------------------------SCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECT
T ss_pred ccc-----------------------------CCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCC
Confidence 111 11111122111 34566665 67899999864
Q ss_pred ccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCc
Q 001123 342 RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRR 421 (1149)
Q Consensus 342 G~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~ 421 (1149)
+.....+ ..+.+|...
T Consensus 199 ~~~~~~~----------------------------------------------------------------~~l~~h~~~ 214 (316)
T 3bg1_A 199 DGQWKEE----------------------------------------------------------------QKLEAHSDW 214 (316)
T ss_dssp TSCEEEE----------------------------------------------------------------ECCBCCSSC
T ss_pred CCcccee----------------------------------------------------------------eecccCCCc
Confidence 3210000 014456667
Q ss_pred eEEEEEcCCC-----cEEEEeCCCeEEEEeC-CC---C-eeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC
Q 001123 422 TEALTTSIDG-----MIWTGGANGLLLQWDP-NG---N-RLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 422 V~ava~s~Dg-----~laSgs~DgtIrlWD~-tG---~-~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~ 487 (1149)
|.+++++|++ .|++|+.|++|++||+ ++ + ..+.+.+|...|+++++ +|++||+|+.||+|+||+..
T Consensus 215 V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 215 VRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred eEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 7888888875 4899999999999998 42 2 33556788999999976 69999999999999999954
No 94
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.94 E-value=7.1e-25 Score=251.21 Aligned_cols=265 Identities=9% Similarity=0.046 Sum_probs=188.1
Q ss_pred eeEEEEEeeC---CeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcC-CCCEE
Q 001123 133 CFLRTIVCTE---EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDE-ASGVV 206 (1149)
Q Consensus 133 ~~l~~l~~~~---~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~-dg~~L 206 (1149)
..+..++... ..+++ +.|++|+|||+.++..... + ...| .+.|.+++|+| ++.+|
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----------------~--~~~~h~~~v~~~~~~~~~~~~l 134 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF-----------------I--QGMGPGDAITGMKFNQFNTNQL 134 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-----------------E--CCCSTTCBEEEEEEETTEEEEE
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-----------------e--ecCCcCCceeEEEeCCCCCCEE
Confidence 4566666663 34555 4599999999987654432 1 1113 78999999999 78999
Q ss_pred EEEeCCCeEEEEECCCCCCCCCCCccceEEeec---CCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCc
Q 001123 207 WSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA---HRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEE 282 (1149)
Q Consensus 207 aSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~G---H~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~ 282 (1149)
++|+.||+|++||+.+.. ...+.+ |.+.|++++|+|+++ |++|+.|++|++||+. ++....+.
T Consensus 135 ~s~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~--- 201 (383)
T 3ei3_B 135 FVSSIRGATTLRDFSGSV---------IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEK--- 201 (383)
T ss_dssp EEEETTTEEEEEETTSCE---------EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEE---
T ss_pred EEEeCCCEEEEEECCCCc---------eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEec---
Confidence 999999999999998632 445544 458999999999998 8999999999999984 33222211
Q ss_pred ceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCC-EEEEec-CCceEEEEcCC----ccEEEEEecCCceee
Q 001123 283 RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDART----RELLKVFNIDGQIEN 356 (1149)
Q Consensus 283 ~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~-~v~Sas-d~tIrLWD~~T----G~~L~~l~~~g~~~~ 356 (1149)
+| ...+.++++++++. .+++++ |++|++||+++ ++++..+. +...+.
T Consensus 202 ----------------~h----------~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~ 254 (383)
T 3ei3_B 202 ----------------LH----------KAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP-HEKPVN 254 (383)
T ss_dssp ----------------CS----------SSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE-CSSCEE
T ss_pred ----------------cC----------CCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec-CCCceE
Confidence 12 25678888888887 777765 67899999998 66777663 333334
Q ss_pred EEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecc------cccCC------------
Q 001123 357 RVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG------GFGDD------------ 418 (1149)
Q Consensus 357 ~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g------~~~~~------------ 418 (1149)
++.+++. ++..+++++.|+..++|+.. .+.+|
T Consensus 255 ~~~~s~~------------------------------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (383)
T 3ei3_B 255 AAYFNPT------------------------------DSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK 304 (383)
T ss_dssp EEEECTT------------------------------TSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC
T ss_pred EEEEcCC------------------------------CCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceE
Confidence 4444440 44444555555555554411 11111
Q ss_pred -----CCceEEEEEcCCCcEEEEeCCCeEEEEeC-CCCeeEeeec--CCccEEEEEe--cCCEEEEeecCcEEEEEeCCC
Q 001123 419 -----NRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQY--LPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEG 488 (1149)
Q Consensus 419 -----~~~V~ava~s~Dg~laSgs~DgtIrlWD~-tG~~l~tl~g--H~~~V~sls~--dG~~LaSGs~DGtIrlWD~~G 488 (1149)
...+.+++++|||++ +|+.|++|++||+ +|+++.++.+ |...+.++++ +|++|++|+ ||+|+|||+++
T Consensus 305 ~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 305 ATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 134455778899888 8999999999999 8999999987 4456666554 799999997 99999999863
No 95
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.94 E-value=1e-24 Score=274.28 Aligned_cols=305 Identities=14% Similarity=0.153 Sum_probs=216.2
Q ss_pred ceeEEEEEee--CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEE
Q 001123 132 GCFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (1149)
Q Consensus 132 ~~~l~~l~~~--~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaS 208 (1149)
...+..++.+ +..+.+ +.|++|+|||+.++..... + ..| .++|.+++|+|++++|++
T Consensus 13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~-----------------~--~~~-~~~v~~~~~s~~~~~l~~ 72 (814)
T 3mkq_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRS-----------------I--QVT-ETPVRAGKFIARKNWIIV 72 (814)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE-----------------E--ECC-SSCEEEEEEEGGGTEEEE
T ss_pred CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEE-----------------E--ecC-CCcEEEEEEeCCCCEEEE
Confidence 3455666666 444554 4588999999987765443 1 123 789999999999999999
Q ss_pred EeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCccee-eecCCCcceee
Q 001123 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKA-LSLKPEERHTA 286 (1149)
Q Consensus 209 GS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~-~~l~~~~~~~~ 286 (1149)
|+.||+|++||+.++. ...++.+|.+.|++++|+|+|. |++|+.||+|++||+.++... ..+
T Consensus 73 ~~~dg~i~vw~~~~~~--------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-------- 136 (814)
T 3mkq_A 73 GSDDFRIRVFNYNTGE--------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF-------- 136 (814)
T ss_dssp EETTSEEEEEETTTCC--------EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEE--------
T ss_pred EeCCCeEEEEECCCCc--------EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEE--------
Confidence 9999999999998865 3678899999999999999997 899999999999999764221 111
Q ss_pred EEEeeeccccccccccccceeeeecCCeEEEEEcC-CCCEEEEec-CCceEEEEcCCccEEEEEecCC-ceeeEEeeccC
Q 001123 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLKVFNIDG-QIENRVDMSLL 363 (1149)
Q Consensus 287 a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~-~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g-~~~~~v~~S~~ 363 (1149)
.+| ...+.++++++ ++..+++++ +++|++||+.+++....+..+. ..+
T Consensus 137 -----------~~~----------~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v-------- 187 (814)
T 3mkq_A 137 -----------EGH----------EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV-------- 187 (814)
T ss_dssp -----------ECC----------SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCC--------
T ss_pred -----------cCC----------CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCE--------
Confidence 112 25577888887 666676654 6889999998887666554322 222
Q ss_pred CCccccccceeeEEecCCCCccceeeeeec--cccceEeecCCcEEEEeec------ccccCCCCceEEEEEcCCCc-EE
Q 001123 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQ--RSRNAIMGAADAVRRVAAK------GGFGDDNRRTEALTTSIDGM-IW 434 (1149)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~k~~~~~si~f~~--~~~~~i~G~~d~v~rv~~~------g~~~~~~~~V~ava~s~Dg~-la 434 (1149)
..+.|.+ ++..++++..++..++|+. ..+.+|...|.+++++|+|. ++
T Consensus 188 -----------------------~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 244 (814)
T 3mkq_A 188 -----------------------NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244 (814)
T ss_dssp -----------------------CEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred -----------------------EEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 2233444 4555667777776666652 23556777888888888876 77
Q ss_pred EEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCC--EEEEeecCcEEEEEeCC-C----------cee-------
Q 001123 435 TGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGS--QIWVGYMNGIVQVLDLE-G----------NLL------- 491 (1149)
Q Consensus 435 Sgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~--~LaSGs~DGtIrlWD~~-G----------~~l------- 491 (1149)
+|+.||+|++||+ +++++..+..|...|.++++ +|+ ++++|+ |+.+.+|++. + +.+
T Consensus 245 ~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 323 (814)
T 3mkq_A 245 SGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNA 323 (814)
T ss_dssp EEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEECSCCSCCEEECSSSEEEEECCTTS
T ss_pred EEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEEcCCCCceeEECCCCCEEEECcccc
Confidence 8888888888888 67888888888888888875 454 455554 5557777743 1 111
Q ss_pred --------------------------eeeeccCCCeEEEE--ecCCeEEeecCCCceeeeecc
Q 001123 492 --------------------------GGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 492 --------------------------~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
..+..|...|.+++ ++|+++++++ |+.+++|++.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~ 385 (814)
T 3mkq_A 324 AASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTAL 385 (814)
T ss_dssp CTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETT
T ss_pred cceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECc
Confidence 11233445566666 5788888877 7888888853
No 96
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.94 E-value=1.4e-25 Score=260.97 Aligned_cols=302 Identities=14% Similarity=0.123 Sum_probs=201.7
Q ss_pred eeEEEEEee--CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-C------------CceEE
Q 001123 133 CFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-V------------SSVMC 196 (1149)
Q Consensus 133 ~~l~~l~~~--~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~------------~~V~~ 196 (1149)
..+.+++.+ +..|.+ +.|+.|+|||+.++..... .. .........+.| . ++|.+
T Consensus 29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~---------~~-~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~ 98 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS---------HS-RGEYNVYSTFQSHEPEFDYLKSLEIEEKINK 98 (447)
T ss_dssp GSEEEEEECSSSSEEEEEETTSEEEEEEECC-----C---------CC-CCCEEEEEEEECCCCEEEGGGTEEECCCCCE
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc---------cc-ccceeEecccccccccccccccccccCceEE
Confidence 366677776 445555 4699999999987653111 00 000001112333 4 78999
Q ss_pred EEEcCCC--CEEEEEeCCCeEEEEECCCCCCCC-----------------CC--Cc------------cceEE-eecCCC
Q 001123 197 MVGDEAS--GVVWSGHRDGRIMCWKMNARLLDS-----------------DD--GF------------GEVLS-WQAHRG 242 (1149)
Q Consensus 197 lafs~dg--~~LaSGS~DGtIRvWdl~~g~~~~-----------------~~--~~------------~~~~~-l~GH~~ 242 (1149)
++|+|++ .+|++|+.||+|++||+.++.... .. .+ ..... +.+|.+
T Consensus 99 l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 178 (447)
T 3dw8_B 99 IRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY 178 (447)
T ss_dssp EEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS
T ss_pred EEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc
Confidence 9999998 899999999999999987632100 00 00 00112 368999
Q ss_pred CEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeec-CCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEc
Q 001123 243 PVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSL-KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD 320 (1149)
Q Consensus 243 ~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l-~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~ 320 (1149)
.|++++|+|+|+ |+|| .|++|++||+.+....... ... ...+.+| ...+.+++++
T Consensus 179 ~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~------------~~~~~~~----------~~~v~~~~~~ 235 (447)
T 3dw8_B 179 HINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIK------------PANMEEL----------TEVITAAEFH 235 (447)
T ss_dssp CCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECC------------CSSGGGC----------CCCEEEEEEC
T ss_pred ceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecc------------ccccccc----------CcceEEEEEC
Confidence 999999999998 6788 7999999999743322211 000 0011122 2568889999
Q ss_pred CCC-CEEEEec-CCceEEEEcCCccE----EEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeecc
Q 001123 321 HSR-AKVWSAG-FLSFALWDARTREL----LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQR 394 (1149)
Q Consensus 321 ~~~-~~v~Sas-d~tIrLWD~~TG~~----L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~ 394 (1149)
+++ ..+++++ |++|++||++++++ +.++..+....
T Consensus 236 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 276 (447)
T 3dw8_B 236 PNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPS--------------------------------------- 276 (447)
T ss_dssp SSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-------------------------------------------
T ss_pred CCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCcc---------------------------------------
Confidence 987 7777765 67899999998875 44444322110
Q ss_pred ccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-C-CCeeEeeecCCccE---------
Q 001123 395 SRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-N-GNRLQDFQYLPFAV--------- 462 (1149)
Q Consensus 395 ~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-t-G~~l~tl~gH~~~V--------- 462 (1149)
....+.+|...|.+++++|+|. |++++. ++|++||+ + ++++.++.+|...+
T Consensus 277 ----------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~ 339 (447)
T 3dw8_B 277 ----------------NRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEN 339 (447)
T ss_dssp -----------------CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHT
T ss_pred ----------------ccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccc
Confidence 0011334556788999999987 677777 99999999 5 89999999986422
Q ss_pred --------EEEEecCCEEEEeecCcEEEEEeCC-Cceeeeeecc---------------------------------CCC
Q 001123 463 --------QCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH---------------------------------SSP 500 (1149)
Q Consensus 463 --------~sls~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH---------------------------------~~~ 500 (1149)
.+++++|++|++|+.||+|++||+. ++.+ .+.+| ...
T Consensus 340 ~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (447)
T 3dw8_B 340 DCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKK 418 (447)
T ss_dssp SGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSC
T ss_pred cccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce-eeeecccccccccccCCccccccCCcccccccccccccCCc
Confidence 2445689999999999999999987 4443 44444 346
Q ss_pred eEEEE--ecCCeEEeecCCCceeeeec
Q 001123 501 VIKMA--VGAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 501 V~sLa--~Dg~~LaSgS~DgtIRlWdl 525 (1149)
|.+++ +++.+|++++.|+ +.+|..
T Consensus 419 i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 419 ILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred eeEEEECCCCCEEEEEecce-eeeecc
Confidence 77787 6889999988775 778863
No 97
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.6e-24 Score=235.73 Aligned_cols=267 Identities=17% Similarity=0.241 Sum_probs=195.4
Q ss_pred eeEEEEEee-CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEe
Q 001123 133 CFLRTIVCT-EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (1149)
Q Consensus 133 ~~l~~l~~~-~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS 210 (1149)
..+..++.. ++.+++ +.|+.|++||+.++..... ...+ .+.|.+++|+|++.+|++|+
T Consensus 19 ~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~-~~~v~~~~~~~~~~~l~~~~ 78 (313)
T 3odt_A 19 QDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTV-------------------VYTG-QGFLNSVCYDSEKELLLFGG 78 (313)
T ss_dssp SCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEE-------------------EEEC-SSCEEEEEEETTTTEEEEEE
T ss_pred CCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEE-------------------eecC-CccEEEEEECCCCCEEEEec
Confidence 345555544 556665 4699999999976554332 1123 78999999999999999999
Q ss_pred CCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEe
Q 001123 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (1149)
Q Consensus 211 ~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~ 290 (1149)
.||.|++|++.... .......+.+|.++|++++|++ +.|++|+.|++|++||. ++....+..
T Consensus 79 ~dg~i~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~d~~i~~~d~--~~~~~~~~~---------- 140 (313)
T 3odt_A 79 KDTMINGVPLFATS-----GEDPLYTLIGHQGNVCSLSFQD-GVVISGSWDKTAKVWKE--GSLVYNLQA---------- 140 (313)
T ss_dssp TTSCEEEEETTCCT-----TSCC-CEECCCSSCEEEEEEET-TEEEEEETTSEEEEEET--TEEEEEEEC----------
T ss_pred CCCeEEEEEeeecC-----CCCcccchhhcccCEEEEEecC-CEEEEEeCCCCEEEEcC--CcEEEeccc----------
Confidence 99999999987643 1234567899999999999943 34899999999999993 222222211
Q ss_pred eeccccccccccccceeeeecCCeEEEEEcC-CCCEEEEec-CCceEEEEcCCccEEEEEec-CCceeeEEeeccCCCcc
Q 001123 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLKVFNI-DGQIENRVDMSLLPDFA 367 (1149)
Q Consensus 291 ~~~~~~l~~~~~~~g~~~~~~~dv~~las~~-~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~-~g~~~~~v~~S~~~~~~ 367 (1149)
| ...+..+++.+ ++..+++++ +++|++|| .++.+..+.. +...
T Consensus 141 ---------~----------~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~------------- 186 (313)
T 3odt_A 141 ---------H----------NASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDV------------- 186 (313)
T ss_dssp ---------C----------SSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSC-------------
T ss_pred ---------C----------CCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCccc-------------
Confidence 1 13455555544 566666654 67899999 4555555543 2222
Q ss_pred ccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec------ccccCCCCceEEEEEcCCCcEEEEeCCCe
Q 001123 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDDNRRTEALTTSIDGMIWTGGANGL 441 (1149)
Q Consensus 368 ~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~------g~~~~~~~~V~ava~s~Dg~laSgs~Dgt 441 (1149)
+..+.|.+++. ++++..++..++++. ..+..|...+.+++++|++.+++|+.||+
T Consensus 187 ------------------i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~ 247 (313)
T 3odt_A 187 ------------------VRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRT 247 (313)
T ss_dssp ------------------EEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSE
T ss_pred ------------------EEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCE
Confidence 23445555555 677777777777752 24567888999999999999999999999
Q ss_pred EEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-Ccee
Q 001123 442 LLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLL 491 (1149)
Q Consensus 442 IrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l 491 (1149)
|++||+ ++++++.+..|...|.++++ +|+ +++|+.||.|++||++ ++.+
T Consensus 248 v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 248 VRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp EEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred EEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 999999 89999999999999999976 566 6779999999999987 4443
No 98
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.4e-24 Score=239.14 Aligned_cols=280 Identities=13% Similarity=0.098 Sum_probs=205.1
Q ss_pred cceeEEEEEee--CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEE
Q 001123 131 IGCFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVW 207 (1149)
Q Consensus 131 ~~~~l~~l~~~--~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~La 207 (1149)
+...+..++.. ++.+++ +.|+.|++||+.++..... + ..| .++|.+++|+|++++|+
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~-----------------~--~~h-~~~v~~~~~~~~~~~l~ 90 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT-----------------L--DGH-TGTIWSIDVDCFTKYCV 90 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEE-----------------E--CCC-SSCEEEEEECTTSSEEE
T ss_pred eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhh-----------------h--hhc-CCcEEEEEEcCCCCEEE
Confidence 34455566655 445555 4699999999987765543 1 123 78999999999999999
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECC-----CcEEEEeCCCcceeeecCCC
Q 001123 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG-----GGIKIWPWEAIEKALSLKPE 281 (1149)
Q Consensus 208 SGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~D-----gTIRVWdl~t~~~~~~l~~~ 281 (1149)
+|+.||+|++||+.++. ....+. |...|.+++|+|+++ |++++.| ++|++||+.+......+...
T Consensus 91 s~~~dg~i~iwd~~~~~--------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~ 161 (369)
T 3zwl_B 91 TGSADYSIKLWDVSNGQ--------CVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKV 161 (369)
T ss_dssp EEETTTEEEEEETTTCC--------EEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEE
T ss_pred EEeCCCeEEEEECCCCc--------EEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccc
Confidence 99999999999998865 255555 899999999999998 7889988 99999999764321111000
Q ss_pred -cceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCC-ccEEEEEecCCceeeEE
Q 001123 282 -ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDART-RELLKVFNIDGQIENRV 358 (1149)
Q Consensus 282 -~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~T-G~~L~~l~~~g~~~~~v 358 (1149)
..... .+..+. ....+.++++++++..+++++ ++.|++||+++ ++.+..+..+...+.
T Consensus 162 ~~~~~~---------~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~-- 222 (369)
T 3zwl_B 162 SEEPIH---------KIITHE--------GLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSIS-- 222 (369)
T ss_dssp CSSCSE---------EEECCT--------TCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEE--
T ss_pred ccceee---------eccCCc--------CccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCcee--
Confidence 00000 000111 012677888888888777765 57899999999 777777766554433
Q ss_pred eeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeeccc-----ccCCCCceEEEEEcCCCc-
Q 001123 359 DMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG-----FGDDNRRTEALTTSIDGM- 432 (1149)
Q Consensus 359 ~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~-----~~~~~~~V~ava~s~Dg~- 432 (1149)
.+.|.+++..++++..++..++|+... ...+...+.+++++|++.
T Consensus 223 -----------------------------~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (369)
T 3zwl_B 223 -----------------------------DMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEF 273 (369)
T ss_dssp -----------------------------EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSE
T ss_pred -----------------------------EEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCce
Confidence 334455555566666777666665211 112556788999999987
Q ss_pred EEEEeCCC--------------eEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC
Q 001123 433 IWTGGANG--------------LLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 433 laSgs~Dg--------------tIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~ 487 (1149)
+++++.++ .|++||. +++++..+.+|...|.++++ +|++|++|+.||+|++||++
T Consensus 274 l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 274 IILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp EEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred EEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECc
Confidence 77888887 8999999 89999999999999999976 79999999999999999987
No 99
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.94 E-value=9.7e-25 Score=244.98 Aligned_cols=240 Identities=19% Similarity=0.208 Sum_probs=176.6
Q ss_pred CCceEEEEEcCCCC-EEEEEeC---CCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCC---Cc-EEEEECCC
Q 001123 191 VSSVMCMVGDEASG-VVWSGHR---DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY---GD-LWSGSEGG 262 (1149)
Q Consensus 191 ~~~V~~lafs~dg~-~LaSGS~---DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpd---G~-L~SGS~Dg 262 (1149)
..+|.+++|+|++. ++++|+. ||+|++||+.++.+ ......+|.++|++++|+|+ |. |++|+.|+
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL-------KLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSE-------EEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcc-------cceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 78999999999985 6667777 99999999988652 12233489999999999998 45 89999999
Q ss_pred cEEEEeCCCcc-eeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEE------EEcCCCCEEEEec-CCce
Q 001123 263 GIKIWPWEAIE-KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNL------LSDHSRAKVWSAG-FLSF 334 (1149)
Q Consensus 263 TIRVWdl~t~~-~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~l------as~~~~~~v~Sas-d~tI 334 (1149)
+|++||+.+++ ....+..+. ..+.++ ++++++..+++++ +++|
T Consensus 91 ~i~iwd~~~~~~~~~~~~~~~-----------------------------~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i 141 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSVKGHK-----------------------------EIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141 (357)
T ss_dssp CEEEECTTSCSSCSEEECCCS-----------------------------SCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred eEEEEeCCCCCccEEEEEecc-----------------------------cceEEEeeccccccCCCccEEEEEeCCCeE
Confidence 99999998765 333322221 334444 2345666777665 6789
Q ss_pred EEEEcCCcc-EEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecc
Q 001123 335 ALWDARTRE-LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG 413 (1149)
Q Consensus 335 rLWD~~TG~-~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g 413 (1149)
++||+++++ .+..+..+...
T Consensus 142 ~vwd~~~~~~~~~~~~~~~~~----------------------------------------------------------- 162 (357)
T 3i2n_A 142 KVWDPRQKDDPVANMEPVQGE----------------------------------------------------------- 162 (357)
T ss_dssp EEECTTSCSSCSEEECCCTTS-----------------------------------------------------------
T ss_pred EEEeCCCCCCcceeccccCCC-----------------------------------------------------------
Confidence 999999876 44444321110
Q ss_pred cccCCCCceEEEE----EcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe-----cCCEEEEeecCcEEE
Q 001123 414 GFGDDNRRTEALT----TSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT-----FGSQIWVGYMNGIVQ 482 (1149)
Q Consensus 414 ~~~~~~~~V~ava----~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~-----dG~~LaSGs~DGtIr 482 (1149)
....+.+++ +++++. +++|+.||+|++||+ ++++ .....|...|.++++ +|++|++|+.||.|+
T Consensus 163 ----~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 237 (357)
T 3i2n_A 163 ----NKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFH 237 (357)
T ss_dssp ----CCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEE
T ss_pred ----CCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEE
Confidence 011233333 567776 789999999999999 5555 445778899999976 579999999999999
Q ss_pred EEeCC-Cceeeee-----eccCCCeEEEE--ecCC-eEEeecCCCceeeeeccCCCC
Q 001123 483 VLDLE-GNLLGGW-----VAHSSPVIKMA--VGAG-YIFTLANHGGIRGWNVTSPGP 530 (1149)
Q Consensus 483 lWD~~-G~~l~~l-----~gH~~~V~sLa--~Dg~-~LaSgS~DgtIRlWdl~sp~p 530 (1149)
+||+. ++++..+ .+|...|.+++ ++++ ++++++.|++|++||+..+..
T Consensus 238 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 294 (357)
T 3i2n_A 238 VFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQ 294 (357)
T ss_dssp EEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSC
T ss_pred EEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcc
Confidence 99975 5544444 49999999998 4666 899999999999999986544
No 100
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=4.8e-25 Score=251.04 Aligned_cols=161 Identities=11% Similarity=0.011 Sum_probs=113.7
Q ss_pred CCeEEEEEcC---CCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccce
Q 001123 312 SDIKNLLSDH---SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQS 387 (1149)
Q Consensus 312 ~dv~~las~~---~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~ 387 (1149)
..+..+++++ ++..++|++ |++|||||++||+++++|.++...+ ..+.
T Consensus 179 ~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v----------------------------~~v~ 230 (356)
T 2w18_A 179 PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQ----------------------------ASVC 230 (356)
T ss_dssp CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC-------------------------------CCCE
T ss_pred CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcce----------------------------eeeE
Confidence 3444445444 677888865 7899999999999999997544321 0112
Q ss_pred eeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCC--cEEEEeCCCeEEEEeC-CCCeeEee-----ecCC
Q 001123 388 SFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG--MIWTGGANGLLLQWDP-NGNRLQDF-----QYLP 459 (1149)
Q Consensus 388 si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg--~laSgs~DgtIrlWD~-tG~~l~tl-----~gH~ 459 (1149)
.++|+|++..+++++. +++ .+++|+.|++|++||. +|+++.++ .+|.
T Consensus 231 ~vafSpdG~~lvs~s~-------------------------~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~ 285 (356)
T 2w18_A 231 HKAYSEMGLLFIVLSH-------------------------PCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQA 285 (356)
T ss_dssp EEEEEETTEEEEEEC-------------------------------------CCEEEEEEETTTTEEEEEEEECCCTTCC
T ss_pred EEEECCCCCEEEEecc-------------------------CCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCc
Confidence 2345554433333221 111 3689999999999999 78888776 4787
Q ss_pred ccEEEEEecCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEE-EE--ecCCeEEeecCCCceeeeec
Q 001123 460 FAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK-MA--VGAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 460 ~~V~sls~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~s-La--~Dg~~LaSgS~DgtIRlWdl 525 (1149)
..+.+..++|.++|+|+.|++|+|||+. |+++++|.+|.+.|.+ ++ +||++|+|||.|++|||||+
T Consensus 286 ~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 286 GRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred ceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 7777777789999999999999999986 8999999999987664 66 69999999999999999995
No 101
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.93 E-value=1.4e-24 Score=245.40 Aligned_cols=270 Identities=12% Similarity=0.055 Sum_probs=197.8
Q ss_pred EEEEEee--CCeEEEe-CCCCEEEEeCCCCC--CCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCCEEEE
Q 001123 135 LRTIVCT--EEQLWAG-GENGLRVWNLKELY--DESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWS 208 (1149)
Q Consensus 135 l~~l~~~--~~~l~ag-~D~tVrvWd~~~g~--~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~~LaS 208 (1149)
+..++.+ ++.++++ .|+.|++||++++. .... +.+ ..+|.+++|+|++++|++
T Consensus 11 i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~---------------------~~~h~~~v~~~~~~~~~~~l~~ 69 (372)
T 1k8k_C 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHE---------------------LKEHNGQVTGVDWAPDSNRIVT 69 (372)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEE---------------------EECCSSCEEEEEEETTTTEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeee---------------------ecCCCCcccEEEEeCCCCEEEE
Confidence 3344444 4456555 69999999988664 2221 223 789999999999999999
Q ss_pred EeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeE
Q 001123 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (1149)
Q Consensus 209 GS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a 287 (1149)
|+.||+|++||+.++.+ .....+.+|.+.|++++|+|+++ |++|+.|++|++||+.+....... ..
T Consensus 70 ~~~dg~i~vwd~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-------~~ 136 (372)
T 1k8k_C 70 CGTDRNAYVWTLKGRTW------KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC-------KH 136 (372)
T ss_dssp EETTSCEEEEEEETTEE------EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE-------EE
T ss_pred EcCCCeEEEEECCCCee------eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceee-------ee
Confidence 99999999999987542 22344578999999999999997 899999999999999764421000 00
Q ss_pred EEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcC------------------CccEEEEE
Q 001123 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDAR------------------TRELLKVF 348 (1149)
Q Consensus 288 ~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~------------------TG~~L~~l 348 (1149)
+ ...| ...+.++++.+++..+++++ +++|++||++ +++++..+
T Consensus 137 ~--------~~~~----------~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (372)
T 1k8k_C 137 I--------KKPI----------RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES 198 (372)
T ss_dssp E--------CTTC----------CSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC
T ss_pred e--------eccc----------CCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec
Confidence 0 0111 25678888988888888765 6789999965 44444444
Q ss_pred ecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec------ccccCCCCce
Q 001123 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDDNRRT 422 (1149)
Q Consensus 349 ~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~------g~~~~~~~~V 422 (1149)
..+. ..+..+.|.+++..++++..++..++|+. ..+..|...+
T Consensus 199 ~~~~-------------------------------~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v 247 (372)
T 1k8k_C 199 SSSC-------------------------------GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPL 247 (372)
T ss_dssp CCCS-------------------------------SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCE
T ss_pred CCCC-------------------------------CeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCe
Confidence 4333 23445566666777788888887777762 2456777889
Q ss_pred EEEEEcCCCcEEEEeCCCeEEEEeC-C--CC--ee------------------------------------Eee-ecCCc
Q 001123 423 EALTTSIDGMIWTGGANGLLLQWDP-N--GN--RL------------------------------------QDF-QYLPF 460 (1149)
Q Consensus 423 ~ava~s~Dg~laSgs~DgtIrlWD~-t--G~--~l------------------------------------~tl-~gH~~ 460 (1149)
.+++++|++.+++++.|+.|++||+ + |+ ++ ..+ .+|..
T Consensus 248 ~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 327 (372)
T 1k8k_C 248 LAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKN 327 (372)
T ss_dssp EEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSS
T ss_pred EEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccC
Confidence 9999999998766669999999999 5 42 11 233 48999
Q ss_pred cEEEEEe---cC---CEEEEeecCcEEEEEeCC
Q 001123 461 AVQCLCT---FG---SQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 461 ~V~sls~---dG---~~LaSGs~DGtIrlWD~~ 487 (1149)
.|+++++ +| ++|++|+.||+|++||++
T Consensus 328 ~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 328 SVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp CEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred CcceeEEecCCCcceeeEEEecCCCceEEEEec
Confidence 9999963 56 999999999999999975
No 102
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2e-24 Score=251.95 Aligned_cols=281 Identities=12% Similarity=0.103 Sum_probs=189.8
Q ss_pred eeEEEEEeeC---CeEEE-eCCCCEEEEeCCC---CCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCE
Q 001123 133 CFLRTIVCTE---EQLWA-GGENGLRVWNLKE---LYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGV 205 (1149)
Q Consensus 133 ~~l~~l~~~~---~~l~a-g~D~tVrvWd~~~---g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~ 205 (1149)
..+..|+... ..|++ +.|++|+|||+.+ +..... .+.. .| .++|.|++|+|++.+
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~----------------~~~~-~h-~~~v~~~~~~~~~~~ 125 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS----------------SLTY-DC-SSTVTQITMIPNFDA 125 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSC----------------SEEE-EC-SSCEEEEEECTTSSE
T ss_pred CceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccce----------------eeec-cC-CCCEEEEEEeCCCCE
Confidence 4556666654 34554 4699999999876 332211 1111 24 789999999999999
Q ss_pred EEEEeCCCeEEEEECC---CCCCCCCCCccceEEee--c--CCCCEEEEE--EeCCCc-EEEEECCCcEEEEeCCCccee
Q 001123 206 VWSGHRDGRIMCWKMN---ARLLDSDDGFGEVLSWQ--A--HRGPVLSLC--ISSYGD-LWSGSEGGGIKIWPWEAIEKA 275 (1149)
Q Consensus 206 LaSGS~DGtIRvWdl~---~g~~~~~~~~~~~~~l~--G--H~~~VtsVa--fSpdG~-L~SGS~DgTIRVWdl~t~~~~ 275 (1149)
|++|+.||+|++||++ .+.+........+..+. . |.+.+.++. +++++. |++|+.|++|++||+.+++..
T Consensus 126 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 205 (437)
T 3gre_A 126 FAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERL 205 (437)
T ss_dssp EEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeee
Confidence 9999999999999995 33310000000111111 2 566777777 557776 799999999999999886654
Q ss_pred eecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEe-cCCc
Q 001123 276 LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN-IDGQ 353 (1149)
Q Consensus 276 ~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~-~~g~ 353 (1149)
..+.... | ...+.++++++++..+++++ |++|++||+++++++.++. .+..
T Consensus 206 ~~~~~~~-----------------h----------~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 258 (437)
T 3gre_A 206 QIIENSP-----------------R----------HGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHA 258 (437)
T ss_dssp EEEECCG-----------------G----------GCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCE
T ss_pred EEEccCC-----------------C----------CCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCC
Confidence 4332100 1 25678888998888888765 6789999999999999886 4444
Q ss_pred eeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec---------------------
Q 001123 354 IENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--------------------- 412 (1149)
Q Consensus 354 ~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~--------------------- 412 (1149)
.+.++.+++. |.+++..+++|+.|+..++|+.
T Consensus 259 ~v~~~~~~~~---------------------------~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 311 (437)
T 3gre_A 259 PITHVEVCQF---------------------------YGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHF 311 (437)
T ss_dssp EEEEEEECTT---------------------------TCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGG
T ss_pred ceEEEEeccc---------------------------cCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCcccee
Confidence 5555544332 1111222333333333333321
Q ss_pred ---------ccccC--CCCceEEEEEcCCCcEEEEeCCCeEEEEeC-CCCeeEeeec-----------------------
Q 001123 413 ---------GGFGD--DNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQY----------------------- 457 (1149)
Q Consensus 413 ---------g~~~~--~~~~V~ava~s~Dg~laSgs~DgtIrlWD~-tG~~l~tl~g----------------------- 457 (1149)
..+.+ |...|.+++++++..|++|+.|++|++||+ ++++++.+.+
T Consensus 312 ~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (437)
T 3gre_A 312 LPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRK 391 (437)
T ss_dssp SCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEE
T ss_pred cccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEe
Confidence 12333 667788999994445899999999999999 7888887776
Q ss_pred --------------CCccEEEEEe--c--CCEEEEeecCcEEEEEe
Q 001123 458 --------------LPFAVQCLCT--F--GSQIWVGYMNGIVQVLD 485 (1149)
Q Consensus 458 --------------H~~~V~sls~--d--G~~LaSGs~DGtIrlWD 485 (1149)
|.+.|+++++ + +.+|++|+.||+|+||.
T Consensus 392 ~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 392 MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8889999865 4 67999999999999995
No 103
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.93 E-value=1e-23 Score=240.80 Aligned_cols=331 Identities=12% Similarity=0.082 Sum_probs=200.8
Q ss_pred eeEEEEEee---CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcC-CCCEEE
Q 001123 133 CFLRTIVCT---EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVW 207 (1149)
Q Consensus 133 ~~l~~l~~~---~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~-dg~~La 207 (1149)
..+..++.. .+.+++ +.|++|++||+.++........... ..........| ..+|.+++|+| ++.+|+
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~ 116 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAV------CSIGRDHPDVH-RYSVETVQWYPHDTGMFT 116 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEE------EEECTTCTTCC-SSCEEEEEECTTCTTCEE
T ss_pred CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccc------ccccccccccC-CCcEEEEEEccCCCcEEE
Confidence 355556664 355555 4699999999998765543000000 00000000013 78999999999 788999
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCC---c-EEEEECCCcEEEEeCCCcceeeecCCCcc
Q 001123 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG---D-LWSGSEGGGIKIWPWEAIEKALSLKPEER 283 (1149)
Q Consensus 208 SGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG---~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~ 283 (1149)
+|+.||+|++||+.++. ....+ .|...+.++++++.+ . |++|+.|++|++||+.+++....+.
T Consensus 117 s~~~d~~i~iwd~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~---- 183 (408)
T 4a11_B 117 SSSFDKTLKVWDTNTLQ--------TADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ---- 183 (408)
T ss_dssp EEETTSEEEEEETTTTE--------EEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC----
T ss_pred EEeCCCeEEEeeCCCCc--------cceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec----
Confidence 99999999999998864 23333 488999999999864 3 7899999999999998765433221
Q ss_pred eeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCC-EEEEe-cCCceEEEEcCCcc-EEEEEecCCceeeEEee
Q 001123 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSA-GFLSFALWDARTRE-LLKVFNIDGQIENRVDM 360 (1149)
Q Consensus 284 ~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~-~v~Sa-sd~tIrLWD~~TG~-~L~~l~~~g~~~~~v~~ 360 (1149)
+| ...+.++++.+++. .++++ .+++|++||+++++ ++..+..+...
T Consensus 184 ---------------~~----------~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~------ 232 (408)
T 4a11_B 184 ---------------GH----------RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGK------ 232 (408)
T ss_dssp ---------------CC----------CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTC------
T ss_pred ---------------CC----------CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccc------
Confidence 12 25677888888877 46555 46889999999876 44444332111
Q ss_pred ccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccc------cCC-----CCce-EEEEEc
Q 001123 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGF------GDD-----NRRT-EALTTS 428 (1149)
Q Consensus 361 S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~------~~~-----~~~V-~ava~s 428 (1149)
...... .....+...+..+.|.+++..++++..++..++|+.... ..+ ...+ ..+...
T Consensus 233 ---~~~~~~-------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (408)
T 4a11_B 233 ---KSQAVE-------SANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCG 302 (408)
T ss_dssp ---SCCCTT-------TSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCS
T ss_pred ---cceeec-------cccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecC
Confidence 000000 011233455667889999889999999998888863211 111 1111 122234
Q ss_pred CCCcEEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEEE
Q 001123 429 IDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKM 504 (1149)
Q Consensus 429 ~Dg~laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sL 504 (1149)
.++.+++++.|++|++||+ +++++..+.+|...|.++++ +|++|++|+.||+|++||++ ++.+.....+... ..+
T Consensus 303 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~ 381 (408)
T 4a11_B 303 CSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK-SQL 381 (408)
T ss_dssp SSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----------------
T ss_pred CCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec-ccc
Confidence 4556888899999999999 89999999999999999865 69999999999999999986 6666554444322 223
Q ss_pred Ee-cCCeEEeecCCCceeeeec
Q 001123 505 AV-GAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 505 a~-Dg~~LaSgS~DgtIRlWdl 525 (1149)
.+ +.....+.+.|+.+++|+.
T Consensus 382 ~~~~~~~~~~~~~~~~~~~W~~ 403 (408)
T 4a11_B 382 NPAFEDAWSSSDEEGGTSAWSH 403 (408)
T ss_dssp ----------------------
T ss_pred ccccceeecccCccCceeecCC
Confidence 32 4445567788999999984
No 104
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.7e-25 Score=278.40 Aligned_cols=237 Identities=12% Similarity=0.068 Sum_probs=185.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCC--Cc-EEEEECCCcEEEE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIW 267 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpd--G~-L~SGS~DgTIRVW 267 (1149)
.++|.|++|+|+|++|++|+.||+|++||+.++. .....++.+|.++|++|+|+|+ |+ |+|||.||+|++|
T Consensus 9 ~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~------~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 9 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp CCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE------EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred cceeEEEEECCCCCeEEEEECCCcEEEEecCCCC------CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 8899999999999999999999999999997533 1346778999999999999988 76 8999999999999
Q ss_pred eCCCcce--eeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCC--CCEEEEec-CCceEEEEcCCc
Q 001123 268 PWEAIEK--ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTR 342 (1149)
Q Consensus 268 dl~t~~~--~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~--~~~v~Sas-d~tIrLWD~~TG 342 (1149)
|+.++.. ...+ .+| ...+.+++++++ +..+++++ +++|++||++++
T Consensus 83 d~~~~~~~~~~~~-------------------~~h----------~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~ 133 (753)
T 3jro_A 83 KEENGRWSQIAVH-------------------AVH----------SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN 133 (753)
T ss_dssp EEETTEEEEEEEE-------------------CCC----------SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSS
T ss_pred ECCCCcccccccc-------------------cCC----------CCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecC
Confidence 9976541 1111 112 256788888887 77777765 678999999876
Q ss_pred cEE--EEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCC
Q 001123 343 ELL--KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR 420 (1149)
Q Consensus 343 ~~L--~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~ 420 (1149)
... ..+. +|..
T Consensus 134 ~~~~~~~~~-------------------------------------------------------------------~~~~ 146 (753)
T 3jro_A 134 GTTSPIIID-------------------------------------------------------------------AHAI 146 (753)
T ss_dssp SCCCCEEEE-------------------------------------------------------------------CCSS
T ss_pred CCcceeEee-------------------------------------------------------------------cCCC
Confidence 321 1111 1222
Q ss_pred ceEEEEEcC-------------CC-cEEEEeCCCeEEEEeC-CC----CeeEeeecCCccEEEEEe--c---CCEEEEee
Q 001123 421 RTEALTTSI-------------DG-MIWTGGANGLLLQWDP-NG----NRLQDFQYLPFAVQCLCT--F---GSQIWVGY 476 (1149)
Q Consensus 421 ~V~ava~s~-------------Dg-~laSgs~DgtIrlWD~-tG----~~l~tl~gH~~~V~sls~--d---G~~LaSGs 476 (1149)
.|.++.++| ++ .+++|+.||+|++||+ ++ .++.++.+|...|+++++ + |++|++|+
T Consensus 147 ~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s 226 (753)
T 3jro_A 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226 (753)
T ss_dssp CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe
Confidence 333344444 34 4899999999999999 55 567888999999999976 5 89999999
Q ss_pred cCcEEEEEeCC-Cc-----eeeeeeccCCCeEEEE--ecCCeEEeecCCCceeeeeccCCC
Q 001123 477 MNGIVQVLDLE-GN-----LLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSPG 529 (1149)
Q Consensus 477 ~DGtIrlWD~~-G~-----~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~sp~ 529 (1149)
.||+|++||+. ++ .+....+|.+.|++++ ++|+++++++.||+|++|++...+
T Consensus 227 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred cCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 99999999975 32 4455667999999988 589999999999999999987543
No 105
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.93 E-value=7.7e-24 Score=234.36 Aligned_cols=269 Identities=12% Similarity=0.086 Sum_probs=177.1
Q ss_pred cceeEEEEEee--CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcC--CCC
Q 001123 131 IGCFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDE--ASG 204 (1149)
Q Consensus 131 ~~~~l~~l~~~--~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~--dg~ 204 (1149)
+...+..++.+ +..|++ +.|++|++||+.++..... ....+.+ ..+|.|++|+| ++.
T Consensus 10 H~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-----------------~~~~~~~~~~~v~~~~~~~~~d~~ 72 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWE-----------------LSDSWRAHDSSIVAIDWASPEYGR 72 (351)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEE-----------------EEEEEECCSSCEEEEEECCGGGCS
T ss_pred cccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcce-----------------ecceeccCCCcEEEEEEcCCCCCC
Confidence 34466677765 455655 4689999999986543211 1122334 78999999999 699
Q ss_pred EEEEEeCCCeEEEEECCCCCCC-CCCCccceEEeecCCCCEEEEEEeCC--Cc-EEEEECCCcEEEEeCCCcceeeecCC
Q 001123 205 VVWSGHRDGRIMCWKMNARLLD-SDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (1149)
Q Consensus 205 ~LaSGS~DGtIRvWdl~~g~~~-~~~~~~~~~~l~GH~~~VtsVafSpd--G~-L~SGS~DgTIRVWdl~t~~~~~~l~~ 280 (1149)
+|++|+.||+|++||+.++... ..........+.+|.++|++++|+|+ +. |++|+.|++|++||+.+++....+..
T Consensus 73 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 152 (351)
T 3f3f_A 73 IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTL 152 (351)
T ss_dssp EEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEE
T ss_pred EEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccc
Confidence 9999999999999999876410 01122346678899999999999999 87 89999999999999987654322210
Q ss_pred CcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCC---CCEEEEec-CCceEEEEcCCccEEEEEecCCceee
Q 001123 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS---RAKVWSAG-FLSFALWDARTRELLKVFNIDGQIEN 356 (1149)
Q Consensus 281 ~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~---~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~ 356 (1149)
... .. .... ........+.++.+.++ +..+++++ ++.+.+|+..+++.....
T Consensus 153 ~~~-~~-------~~~~--------~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------- 208 (351)
T 3f3f_A 153 TSE-MK-------VLSI--------PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAA-------- 208 (351)
T ss_dssp EEE-EE-------SCSC--------CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEE--------
T ss_pred ccc-cc-------cccc--------ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeee--------
Confidence 000 00 0000 00012245677777775 66666655 456766766655431111
Q ss_pred EEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCC-----
Q 001123 357 RVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG----- 431 (1149)
Q Consensus 357 ~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg----- 431 (1149)
.+.+|...|.+++++|++
T Consensus 209 ---------------------------------------------------------~~~~h~~~i~~~~~~p~~~~~~~ 231 (351)
T 3f3f_A 209 ---------------------------------------------------------KLPGHKSLIRSISWAPSIGRWYQ 231 (351)
T ss_dssp ---------------------------------------------------------ECCCCCSCEEEEEECCCSSCSSE
T ss_pred ---------------------------------------------------------ecCCCCcceeEEEECCCCCCcce
Confidence 022344445555666664
Q ss_pred cEEEEeCCCeEEEEeC-C----------------------------------------------CCeeEeeecCCccEEE
Q 001123 432 MIWTGGANGLLLQWDP-N----------------------------------------------GNRLQDFQYLPFAVQC 464 (1149)
Q Consensus 432 ~laSgs~DgtIrlWD~-t----------------------------------------------G~~l~tl~gH~~~V~s 464 (1149)
.+++|+.||+|++||+ + ++++..+.+|...|++
T Consensus 232 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 311 (351)
T 3f3f_A 232 LIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWS 311 (351)
T ss_dssp EEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEE
T ss_pred EEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEE
Confidence 2566666666666666 3 3778889999999999
Q ss_pred EEe--cCCEEEEeecCcEEEEEeCC-Cc---eeeeeecc
Q 001123 465 LCT--FGSQIWVGYMNGIVQVLDLE-GN---LLGGWVAH 497 (1149)
Q Consensus 465 ls~--dG~~LaSGs~DGtIrlWD~~-G~---~l~~l~gH 497 (1149)
+++ +|++|++|+.||+|+|||++ ++ ++..+..|
T Consensus 312 ~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~ 350 (351)
T 3f3f_A 312 VSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVITAQ 350 (351)
T ss_dssp EEECSSSCCEEEEETTSCEEEEEECTTSCEEEEEEEC--
T ss_pred EEEcCCCCEEEEecCCCcEEEEecCcCcchhheeehccc
Confidence 976 69999999999999999976 43 45555554
No 106
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.93 E-value=5.2e-25 Score=264.96 Aligned_cols=254 Identities=6% Similarity=-0.044 Sum_probs=196.7
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~ 270 (1149)
..+|.+|+|+|||++|||||.|++|| |...+. ++.||.+.|++|+|+|+| .|+++++|+.+
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~-----------~l~gh~~~v~~V~FsPdg------~~~~~~~~~~~ 75 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK-----------DINCNSKNLFHVKEFPLE------FENKLDFELAQ 75 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCCS-----------CCSSBGGGTEEEEEECCC------CCCTTTTSCCC
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--cccccc-----------eecCCCccEEEEEECCCC------CcceEEEEeCC
Confidence 46899999999999999999999999 755432 347999999999999998 57777776653
Q ss_pred CcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEe
Q 001123 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN 349 (1149)
Q Consensus 271 t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~ 349 (1149)
... .+.+. +...|.+++++++|.++++++ +++++|||..+ ++..+.
T Consensus 76 ~~~-~~~~~------------------------------~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~ 122 (588)
T 2j04_A 76 QNG-LLNSQ------------------------------PVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD 122 (588)
T ss_dssp SSC-SSTTS------------------------------CSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC
T ss_pred Cce-EeecC------------------------------CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc
Confidence 211 11110 125688899999999888765 68899999644 555554
Q ss_pred cCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec--cc-----------c-
Q 001123 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--GG-----------F- 415 (1149)
Q Consensus 350 ~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~--g~-----------~- 415 (1149)
+...+ ....+.++.|+|+++.+++|+.|+..++|+. +. +
T Consensus 123 -~~~~~--------------------------~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~ 175 (588)
T 2j04_A 123 -SKGNL--------------------------SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIR 175 (588)
T ss_dssp -CSSCS--------------------------TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEE
T ss_pred -CCCcc--------------------------ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeee
Confidence 22210 0123456788888899999999998888862 21 2
Q ss_pred ---cCCCCceEEEEEcCCCcEEEEeCCCeEEEEeCC-CC---eeEeee-cCCccEEEEEecCCEEEEeecCcEEEEEeCC
Q 001123 416 ---GDDNRRTEALTTSIDGMIWTGGANGLLLQWDPN-GN---RLQDFQ-YLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 416 ---~~~~~~V~ava~s~Dg~laSgs~DgtIrlWD~t-G~---~l~tl~-gH~~~V~sls~dG~~LaSGs~DGtIrlWD~~ 487 (1149)
.+|...|.+++++||| +++++.|++|++||+. ++ ..+++. +|...|.++++.|++||+++ +++|++||+.
T Consensus 176 ~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~ 253 (588)
T 2j04_A 176 LSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLK 253 (588)
T ss_dssp CSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETT
T ss_pred cccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECC
Confidence 5677899999999999 9999999999999994 44 246774 78899999988889999998 6999999998
Q ss_pred Cceeeeee-ccCCCeEEEEe----cCCeEEeecCCCceeeeecc
Q 001123 488 GNLLGGWV-AHSSPVIKMAV----GAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 488 G~~l~~l~-gH~~~V~sLa~----Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
+..+..+. ||.+.|+++++ |++.|++++.||+ |+|...
T Consensus 254 ~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 254 NYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp TTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred CCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 66554444 99999998874 7778999999999 999964
No 107
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.93 E-value=3.1e-24 Score=240.23 Aligned_cols=244 Identities=14% Similarity=0.111 Sum_probs=184.7
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc--EEEEECCCcEEEEe
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWP 268 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~--L~SGS~DgTIRVWd 268 (1149)
.+.|.|++|+|++.+|++|+.||+|++|++.++.. ......+.+|.++|++++|+|+++ |++|+.||+|++||
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-----NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-----EEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc-----cccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 78999999999999999999999999999987530 112455679999999999999988 78999999999999
Q ss_pred C-CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEE
Q 001123 269 W-EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (1149)
Q Consensus 269 l-~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~ 346 (1149)
+ .+++. ..+. +. .+...+.++++.+ +..+++++ +++|++||+++..-
T Consensus 86 ~~~~~~~-~~~~-------------------~~--------~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~-- 134 (342)
T 1yfq_A 86 LIGSPSF-QALT-------------------NN--------EANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGD-- 134 (342)
T ss_dssp SSSSSSE-EECB-------------------SC--------CCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTT--
T ss_pred eccCCce-Eecc-------------------cc--------CCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccc--
Confidence 9 76542 1111 10 0125677888888 67777655 67899999864110
Q ss_pred EEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEE
Q 001123 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (1149)
Q Consensus 347 ~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava 426 (1149)
... ... . .. ...+. +...+.+++
T Consensus 135 -----~~~----------------------~~~-~--~~--------------------------~~~~~-~~~~v~~~~ 157 (342)
T 1yfq_A 135 -----GVI----------------------AVK-N--LN--------------------------SNNTK-VKNKIFTMD 157 (342)
T ss_dssp -----BCE----------------------EEE-E--SC--------------------------SSSSS-SCCCEEEEE
T ss_pred -----ccc----------------------ccc-C--Ce--------------------------eeEEe-eCCceEEEE
Confidence 000 000 0 00 00111 445677888
Q ss_pred EcCCCcEEEEeCCCeEEEEeC-C-CCe--eEeeecCCccEEEEEe---cCCEEEEeecCcEEEEEeCC-C------ceee
Q 001123 427 TSIDGMIWTGGANGLLLQWDP-N-GNR--LQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE-G------NLLG 492 (1149)
Q Consensus 427 ~s~Dg~laSgs~DgtIrlWD~-t-G~~--l~tl~gH~~~V~sls~---dG~~LaSGs~DGtIrlWD~~-G------~~l~ 492 (1149)
+++++ +++|+.|++|++||+ + +.. ......|...|.++++ +|++|++|+.||.|++||.+ + +.+.
T Consensus 158 ~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~ 236 (342)
T 1yfq_A 158 TNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp ECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred ecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence 99888 999999999999999 5 543 3345568889998865 68999999999999999975 4 6788
Q ss_pred eeeccCC---------CeEEEE--ecCCeEEeecCCCceeeeeccCC
Q 001123 493 GWVAHSS---------PVIKMA--VGAGYIFTLANHGGIRGWNVTSP 528 (1149)
Q Consensus 493 ~l~gH~~---------~V~sLa--~Dg~~LaSgS~DgtIRlWdl~sp 528 (1149)
.+.+|.. .|.+++ +++++|++++.|++|++||+.+.
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence 8999866 999998 48999999999999999998754
No 108
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.93 E-value=6.7e-25 Score=257.89 Aligned_cols=273 Identities=11% Similarity=0.080 Sum_probs=183.2
Q ss_pred ceeEEEEEee--C-CeEEEe-CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcC-CCCEE
Q 001123 132 GCFLRTIVCT--E-EQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVV 206 (1149)
Q Consensus 132 ~~~l~~l~~~--~-~~l~ag-~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~-dg~~L 206 (1149)
...+.+|+.+ . +.|.+| .||+|+|||+.++..... +....| .++|.||+|+| ++.+|
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~-----------------~~~~gH-~~~V~~l~f~p~~~~~l 180 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTF-----------------IKGIGA-GGSITGLKFNPLNTNQF 180 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEE-----------------ECCCSS-SCCCCEEEECSSCTTEE
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeE-----------------EEccCC-CCCEEEEEEeCCCCCEE
Confidence 3457888886 3 345544 699999999986654321 111123 78999999998 68999
Q ss_pred EEEeCCCeEEEEECCCCCCCCCCCccceEEee---cCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCc
Q 001123 207 WSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ---AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEE 282 (1149)
Q Consensus 207 aSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~---GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~ 282 (1149)
+|||.||+||+||++++. ...+. .|...|.+++|+|+|+ |++|+.||+|++||+.+.. ...+
T Consensus 181 ~s~s~D~~v~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-~~~~---- 246 (435)
T 4e54_B 181 YASSMEGTTRLQDFKGNI---------LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LWNL---- 246 (435)
T ss_dssp EEECSSSCEEEEETTSCE---------EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-CCCS----
T ss_pred EEEeCCCEEEEeeccCCc---------eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-eEEE----
Confidence 999999999999998743 33333 3355789999999998 7899999999999986421 1111
Q ss_pred ceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCC-EEEEec-CCceEEEEcCCccEEEEEecCCceeeEEee
Q 001123 283 RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDM 360 (1149)
Q Consensus 283 ~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~-~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~ 360 (1149)
.+|. ..|.++++++++. .+++++ |++|++||+++++....+.
T Consensus 247 ---------------~~h~----------~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~----------- 290 (435)
T 4e54_B 247 ---------------RMHK----------KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL----------- 290 (435)
T ss_dssp ---------------BCCS----------SCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCS-----------
T ss_pred ---------------eccc----------ceEEeeeecCCCceEEEEecCcceeeEEecccccccceEE-----------
Confidence 1222 5677888887665 566654 7899999998765322211
Q ss_pred ccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecc------cccCCC---------------
Q 001123 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG------GFGDDN--------------- 419 (1149)
Q Consensus 361 S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g------~~~~~~--------------- 419 (1149)
....+...+.++.|.+++..+++++.|+..++|+.. .+..|.
T Consensus 291 -----------------~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (435)
T 4e54_B 291 -----------------YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWH 353 (435)
T ss_dssp -----------------BCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEEC
T ss_pred -----------------EeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEc
Confidence 111233445566777778888888888877777521 111211
Q ss_pred --CceEEEEEcCCCc--EEEEeCCCeEEEEeC-CCCeeEeee-cCCccEEEE---EecCCEEEEeecCcEEEEEeCC-Cc
Q 001123 420 --RRTEALTTSIDGM--IWTGGANGLLLQWDP-NGNRLQDFQ-YLPFAVQCL---CTFGSQIWVGYMNGIVQVLDLE-GN 489 (1149)
Q Consensus 420 --~~V~ava~s~Dg~--laSgs~DgtIrlWD~-tG~~l~tl~-gH~~~V~sl---s~dG~~LaSGs~DGtIrlWD~~-G~ 489 (1149)
..+.++.+++++. ++++..+++|++||. +|+++..+. +|...|.++ +++|++||+|+ |++|+|||++ |+
T Consensus 354 ~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 354 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 1122333444443 223334578999999 899988875 677788776 34799999986 8899999986 65
Q ss_pred e
Q 001123 490 L 490 (1149)
Q Consensus 490 ~ 490 (1149)
.
T Consensus 433 ~ 433 (435)
T 4e54_B 433 T 433 (435)
T ss_dssp -
T ss_pred e
Confidence 4
No 109
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.7e-23 Score=246.75 Aligned_cols=235 Identities=10% Similarity=0.096 Sum_probs=178.6
Q ss_pred CCceEEEEEcCCCCEE-EEEeCCCeEEEEECC--CCCCCCCCCccceEEee--cCCCCEEEEEEeCCCc-EEEEECCCcE
Q 001123 191 VSSVMCMVGDEASGVV-WSGHRDGRIMCWKMN--ARLLDSDDGFGEVLSWQ--AHRGPVLSLCISSYGD-LWSGSEGGGI 264 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~L-aSGS~DGtIRvWdl~--~g~~~~~~~~~~~~~l~--GH~~~VtsVafSpdG~-L~SGS~DgTI 264 (1149)
.+.|.|++|+|+|++| ++|+.||+|++||+. ++. ....+. +|...|++|+|+|+|+ |++|+.||+|
T Consensus 102 ~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~--------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v 173 (450)
T 2vdu_B 102 YSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN--------VLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDV 173 (450)
T ss_dssp CCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS--------CEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc--------eeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcE
Confidence 4579999999999996 999999999999998 654 255555 6789999999999997 8999999999
Q ss_pred EEEeCCCcceee-ecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCC---CCEEEEec-CCceEEEEc
Q 001123 265 KIWPWEAIEKAL-SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS---RAKVWSAG-FLSFALWDA 339 (1149)
Q Consensus 265 RVWdl~t~~~~~-~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~---~~~v~Sas-d~tIrLWD~ 339 (1149)
++|++.++.... ... .+.+| ...+.+++++++ +..+++++ |++|++||+
T Consensus 174 ~~~~~~~~~~~~~~~~----------------~~~~h----------~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~ 227 (450)
T 2vdu_B 174 YSIDINSIPEEKFTQE----------------PILGH----------VSMLTDVHLIKDSDGHQFIITSDRDEHIKISHY 227 (450)
T ss_dssp EEEETTSCCCSSCCCC----------------CSEEC----------SSCEEEEEEEECTTSCEEEEEEETTSCEEEEEE
T ss_pred EEEecCCcccccccce----------------eeecc----------cCceEEEEEcCCCCCCcEEEEEcCCCcEEEEEC
Confidence 999997654221 000 01112 256778888887 77777765 678999999
Q ss_pred CCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCC
Q 001123 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (1149)
Q Consensus 340 ~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~ 419 (1149)
.+++++..+ +.+|.
T Consensus 228 ~~~~~~~~~------------------------------------------------------------------~~~h~ 241 (450)
T 2vdu_B 228 PQCFIVDKW------------------------------------------------------------------LFGHK 241 (450)
T ss_dssp SCTTCEEEE------------------------------------------------------------------CCCCS
T ss_pred CCCceeeee------------------------------------------------------------------ecCCC
Confidence 887655432 12344
Q ss_pred CceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecC-------------------------CccEEEEEe--cCC
Q 001123 420 RRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL-------------------------PFAVQCLCT--FGS 470 (1149)
Q Consensus 420 ~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH-------------------------~~~V~sls~--dG~ 470 (1149)
..|.+++++ ++. |++|+.|++|++||+ +|++++.+..+ ...|.++++ +|+
T Consensus 242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 320 (450)
T 2vdu_B 242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP 320 (450)
T ss_dssp SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS
T ss_pred CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC
Confidence 556778888 765 889999999999999 89999888643 346777765 699
Q ss_pred EEEEee-cCcEEEEEeC--C-C---ceeeeeeccCCCeEEEEecC-CeEEeecC-------CCceeeeeccC
Q 001123 471 QIWVGY-MNGIVQVLDL--E-G---NLLGGWVAHSSPVIKMAVGA-GYIFTLAN-------HGGIRGWNVTS 527 (1149)
Q Consensus 471 ~LaSGs-~DGtIrlWD~--~-G---~~l~~l~gH~~~V~sLa~Dg-~~LaSgS~-------DgtIRlWdl~s 527 (1149)
+|++++ .|++|+|||+ . + +++..+.+| +.|.++++.+ ..+++++. ++.|++|.+..
T Consensus 321 ~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 321 FVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 999999 8999999998 3 4 567888899 8999998643 34444432 56689998753
No 110
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.93 E-value=5.5e-24 Score=244.02 Aligned_cols=262 Identities=8% Similarity=0.001 Sum_probs=184.5
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-E-EEEECCCcEEEEe
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWP 268 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L-~SGS~DgTIRVWd 268 (1149)
.++|.|++|+|||++|++|+.|| +++|+++++. .. +..+...+..+++++++. + ++|+.|++|+|||
T Consensus 19 ~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~--------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 19 SNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVA--------HI--MSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWD 87 (355)
T ss_dssp CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEE--------EE--EEEECSCCCEEEECTTSSEEEEECSSTTEEEEEE
T ss_pred CCceEEEEECCCCCEEEEEcCCE-EEEEecCCcc--------ee--eeeecCCeEEEEEcCCCCEEEEEECCccEEEEEE
Confidence 78999999999999999999886 7899987643 12 223334688888988876 4 5788999999999
Q ss_pred CCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCc-cEEEE
Q 001123 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTR-ELLKV 347 (1149)
Q Consensus 269 l~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG-~~L~~ 347 (1149)
+.+++....+. ....+..+.++++ .++.+.+++|++||+.++ +++..
T Consensus 88 ~~~~~~~~~~~------------------------------~~~~v~~v~~~~~--~~~~~~~~~i~i~d~~~~~~~~~~ 135 (355)
T 3vu4_A 88 DVKKQDVSRIK------------------------------VDAPVKDLFLSRE--FIVVSYGDVISVFKFGNPWKRITD 135 (355)
T ss_dssp TTTTEEEEEEE------------------------------CSSCEEEEEECSS--EEEEEETTEEEEEESSTTCCBSSC
T ss_pred CCCCcEEEEEE------------------------------CCCceEEEEEcCC--EEEEEEcCEEEEEECCCCceeeEE
Confidence 98876543221 1134556666543 455556789999999988 66555
Q ss_pred EecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEe-ecCCcEEEEee---------------
Q 001123 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIM-GAADAVRRVAA--------------- 411 (1149)
Q Consensus 348 l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~-G~~d~v~rv~~--------------- 411 (1149)
+.. ......+++ ...++. |..++..++|+
T Consensus 136 ~~~---~~~~~~~s~--------------------------------~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~ 180 (355)
T 3vu4_A 136 DIR---FGGVCEFSN--------------------------------GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQ 180 (355)
T ss_dssp CEE---EEEEEEEET--------------------------------TEEEEEESSCTTCEEEEECCC------------
T ss_pred ecc---CCceEEEEc--------------------------------cEEEEeCCCcCcEEEEEECCCCCcccccccccc
Confidence 443 111112221 001111 33333333332
Q ss_pred -------cccccCCCCceEEEEEcCCCc-EEEEeCCCe-EEEEeC-CCCeeEeee-c-CCccEEEEEe--cCCEEEEeec
Q 001123 412 -------KGGFGDDNRRTEALTTSIDGM-IWTGGANGL-LLQWDP-NGNRLQDFQ-Y-LPFAVQCLCT--FGSQIWVGYM 477 (1149)
Q Consensus 412 -------~g~~~~~~~~V~ava~s~Dg~-laSgs~Dgt-IrlWD~-tG~~l~tl~-g-H~~~V~sls~--dG~~LaSGs~ 477 (1149)
...+.+|...|.+++++|||. |++|+.|++ |++||+ +|+++.++. + |...|+++++ +|++|++|+.
T Consensus 181 ~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~ 260 (355)
T 3vu4_A 181 QKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSD 260 (355)
T ss_dssp ------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEET
T ss_pred ccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEEC
Confidence 123678899999999999987 789999999 999999 799999998 6 9999999976 6999999999
Q ss_pred CcEEEEEeCC-Cc--eeeeeec---------------------cCCCeEEEE--ecCCeEEeecCCCceeeeeccCCCC
Q 001123 478 NGIVQVLDLE-GN--LLGGWVA---------------------HSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSPGP 530 (1149)
Q Consensus 478 DGtIrlWD~~-G~--~l~~l~g---------------------H~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~sp~p 530 (1149)
|++|+|||++ +. ....+.+ +......++ +|+++|++++.||++++|++...+.
T Consensus 261 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 261 KWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp TCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred CCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence 9999999975 22 1122111 111223344 6899999999999999999875443
No 111
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.92 E-value=2.5e-24 Score=245.42 Aligned_cols=277 Identities=13% Similarity=0.045 Sum_probs=182.8
Q ss_pred CCeEEEe-CCCCEEEEeCCCC--CCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 001123 142 EEQLWAG-GENGLRVWNLKEL--YDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCW 218 (1149)
Q Consensus 142 ~~~l~ag-~D~tVrvWd~~~g--~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvW 218 (1149)
++.++++ .|++|+|||+.++ ..... + ..| .++|.+++|+|++++|+||+.||+|++|
T Consensus 23 g~~l~~~~~d~~i~iw~~~~~~~~~~~~-----------------~--~~h-~~~v~~~~~s~~~~~l~s~s~d~~v~vw 82 (377)
T 3dwl_C 23 RTEFVTTTATNQVELYEQDGNGWKHART-----------------F--SDH-DKIVTCVDWAPKSNRIVTCSQDRNAYVY 82 (377)
T ss_dssp SSEEECCCSSSCBCEEEEETTEEEECCC-----------------B--CCC-SSCEEEEEECTTTCCEEEEETTSSEEEC
T ss_pred CCEEEEecCCCEEEEEEccCCceEEEEE-----------------E--ecC-CceEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 4455555 6999999999876 33322 1 123 7899999999999999999999999999
Q ss_pred ECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcce---eeecCCCcceeeEEEeeecc
Q 001123 219 KMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEK---ALSLKPEERHTAALIVERSY 294 (1149)
Q Consensus 219 dl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~---~~~l~~~~~~~~a~~~~~~~ 294 (1149)
|+.++. .......+.+|.+.|++++|+|+++ |++|+.|++|++||+.+++. ...+
T Consensus 83 d~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---------------- 141 (377)
T 3dwl_C 83 EKRPDG-----TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHL---------------- 141 (377)
T ss_dssp -----------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEE----------------
T ss_pred EcCCCC-----ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEe----------------
Confidence 998754 1134667889999999999999997 89999999999999976542 1111
Q ss_pred ccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccce
Q 001123 295 IDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFK 373 (1149)
Q Consensus 295 ~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~ 373 (1149)
.+ .+...+.++++++++..+++++ |++|++||+.+++........ ...... ..
T Consensus 142 ---~~---------~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----------~~~~~~----~~ 195 (377)
T 3dwl_C 142 ---KR---------PLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEAS----------VWGSRL----PF 195 (377)
T ss_dssp ---CS---------SCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSC----------SSCSCC----CE
T ss_pred ---ec---------ccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcccc----------cccccc----ch
Confidence 11 0125688889999888888765 678999999755421110000 000000 00
Q ss_pred eeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec----------ccccCCCCceEEEEEcCCCcE-EEEeCCCeE
Q 001123 374 TKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK----------GGFGDDNRRTEALTTSIDGMI-WTGGANGLL 442 (1149)
Q Consensus 374 ~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~----------g~~~~~~~~V~ava~s~Dg~l-aSgs~DgtI 442 (1149)
........+...+..+.|.+++..+++++.|+..++|+. ..+.+|...|.+++++|+|.+ ++|+.|+ +
T Consensus 196 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-~ 274 (377)
T 3dwl_C 196 NTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYS-P 274 (377)
T ss_dssp EEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSS-E
T ss_pred hhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCc-E
Confidence 001111134455667788888888889998988888762 234577788999999999985 5555555 5
Q ss_pred EEEeCC--C-CeeEe----------------------------------e----------------ecCCccEEEEEe--
Q 001123 443 LQWDPN--G-NRLQD----------------------------------F----------------QYLPFAVQCLCT-- 467 (1149)
Q Consensus 443 rlWD~t--G-~~l~t----------------------------------l----------------~gH~~~V~sls~-- 467 (1149)
.+|+.. | ++... + ..|...|+++.+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~ 354 (377)
T 3dwl_C 275 ILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYA 354 (377)
T ss_dssp EEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEE
T ss_pred EEEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccC
Confidence 577662 2 11111 1 129999999974
Q ss_pred -cCC---EEEEeecCcEEEEEeC
Q 001123 468 -FGS---QIWVGYMNGIVQVLDL 486 (1149)
Q Consensus 468 -dG~---~LaSGs~DGtIrlWD~ 486 (1149)
++. +|+||+.||+|+|||+
T Consensus 355 ~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 355 GTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EETTEEEEEEEEETTSEEEEECC
T ss_pred CCCCceEEEEeecCCCcEEEecC
Confidence 233 7999999999999995
No 112
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.92 E-value=8.9e-24 Score=248.19 Aligned_cols=247 Identities=14% Similarity=0.135 Sum_probs=189.3
Q ss_pred CCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCC--CCCccceEEeecCCCCEEEEEEeCCCc--EEEEECCCcEE
Q 001123 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDS--DDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIK 265 (1149)
Q Consensus 191 ~~~V~~lafs~d-g~~LaSGS~DGtIRvWdl~~g~~~~--~~~~~~~~~l~GH~~~VtsVafSpdG~--L~SGS~DgTIR 265 (1149)
.+.|.+++|+|+ +.+||+|+.||+|++|++....... .........+.+|.+.|++|+|+|++. |+||+.||+|+
T Consensus 128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 207 (430)
T 2xyi_A 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTIC 207 (430)
T ss_dssp SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEE
T ss_pred CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEE
Confidence 789999999998 6899999999999999997521000 001245678899999999999999986 78999999999
Q ss_pred EEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcC-CCCEEEEec-CCceEEEEcCCcc
Q 001123 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRE 343 (1149)
Q Consensus 266 VWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~-~~~~v~Sas-d~tIrLWD~~TG~ 343 (1149)
+|++.++..... .... ...+.+ +...+.++++.+ ++..+++++ ++.|++||++++.
T Consensus 208 vwd~~~~~~~~~------~~~~------~~~~~~----------h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~ 265 (430)
T 2xyi_A 208 LWDINATPKEHR------VIDA------KNIFTG----------HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN 265 (430)
T ss_dssp EEETTSCCBGGG------EEEC------SEEECC----------CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC
T ss_pred EEeCCCCCCCCc------eecc------ceeecC----------CCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 999976321100 0000 000111 225678888887 556676664 6889999998652
Q ss_pred ---EEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCC
Q 001123 344 ---LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR 420 (1149)
Q Consensus 344 ---~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~ 420 (1149)
.+.. +..|..
T Consensus 266 ~~~~~~~-------------------------------------------------------------------~~~~~~ 278 (430)
T 2xyi_A 266 TSKPSHT-------------------------------------------------------------------VDAHTA 278 (430)
T ss_dssp SSSCSEE-------------------------------------------------------------------EECCSS
T ss_pred CCcceeE-------------------------------------------------------------------eecCCC
Confidence 1111 123445
Q ss_pred ceEEEEEcCCCc--EEEEeCCCeEEEEeC-C-CCeeEeeecCCccEEEEEe--cC-CEEEEeecCcEEEEEeCCC-----
Q 001123 421 RTEALTTSIDGM--IWTGGANGLLLQWDP-N-GNRLQDFQYLPFAVQCLCT--FG-SQIWVGYMNGIVQVLDLEG----- 488 (1149)
Q Consensus 421 ~V~ava~s~Dg~--laSgs~DgtIrlWD~-t-G~~l~tl~gH~~~V~sls~--dG-~~LaSGs~DGtIrlWD~~G----- 488 (1149)
.|.+++++|++. +++|+.||+|++||+ + +.++.++.+|...|.++++ +| .+|++|+.||+|+|||+..
T Consensus 279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~ 358 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 358 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCC
T ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcccc
Confidence 677888999874 789999999999999 4 5789999999999999976 46 4799999999999999753
Q ss_pred ----------ceeeeeeccCCCeEEEEe--cCC-eEEeecCCCceeeeecc
Q 001123 489 ----------NLLGGWVAHSSPVIKMAV--GAG-YIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 489 ----------~~l~~l~gH~~~V~sLa~--Dg~-~LaSgS~DgtIRlWdl~ 526 (1149)
+++..+.+|.+.|.++++ ++. +++|++.|++|++|++.
T Consensus 359 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 359 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp CHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 678888999999999984 676 89999999999999985
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.92 E-value=3.2e-22 Score=229.11 Aligned_cols=317 Identities=8% Similarity=0.047 Sum_probs=213.3
Q ss_pred eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCCC
Q 001123 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV-WSGHRDGRIMCWKMNARLLD 226 (1149)
Q Consensus 148 g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~L-aSGS~DGtIRvWdl~~g~~~ 226 (1149)
+.|++|++||++++..... +.+...+.+++|+|+|+.| ++++.|++|++||+.++.
T Consensus 9 ~~d~~v~v~d~~~~~~~~~---------------------~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~-- 65 (391)
T 1l0q_A 9 SESDNISVIDVTSNKVTAT---------------------IPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN-- 65 (391)
T ss_dssp TTTTEEEEEETTTTEEEEE---------------------EECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE--
T ss_pred CCCCEEEEEECCCCeEEEE---------------------eecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCe--
Confidence 4589999999987765432 2224568999999999876 788899999999998865
Q ss_pred CCCCccceEEeecCCCCEEEEEEeCCCc-E-EEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeecccccccccccc
Q 001123 227 SDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (1149)
Q Consensus 227 ~~~~~~~~~~l~GH~~~VtsVafSpdG~-L-~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~ 304 (1149)
....+..|. .|.+++|+|+|+ | ++++.|++|++||+.+++....+.
T Consensus 66 ------~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~------------------------- 113 (391)
T 1l0q_A 66 ------VIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK------------------------- 113 (391)
T ss_dssp ------EEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-------------------------
T ss_pred ------EEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe-------------------------
Confidence 245555554 999999999998 5 467788999999998765432221
Q ss_pred ceeeeecCCeEEEEEcCCCCEE-EEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCC
Q 001123 305 GFSSILTSDIKNLLSDHSRAKV-WSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKK 382 (1149)
Q Consensus 305 g~~~~~~~dv~~las~~~~~~v-~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k 382 (1149)
....+..+++++++..+ ++++ +++|++||+.+++++..+..+..+ ..+.++
T Consensus 114 -----~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~--------------------- 166 (391)
T 1l0q_A 114 -----TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSP-KGIAVT--------------------- 166 (391)
T ss_dssp -----CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSE-EEEEEC---------------------
T ss_pred -----CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCc-ceEEEC---------------------
Confidence 01345667788888766 4554 678999999999998888755433 333333
Q ss_pred Cccceeeeeeccccce-EeecCCcEEEEeecc-----cccCCCCceEEEEEcCCCc-EEEEe---CCCeEEEEeC-CCCe
Q 001123 383 DKAQSSFGFFQRSRNA-IMGAADAVRRVAAKG-----GFGDDNRRTEALTTSIDGM-IWTGG---ANGLLLQWDP-NGNR 451 (1149)
Q Consensus 383 ~~~~~si~f~~~~~~~-i~G~~d~v~rv~~~g-----~~~~~~~~V~ava~s~Dg~-laSgs---~DgtIrlWD~-tG~~ 451 (1149)
+++..+ +++..++..++++.. ....+...+.+++++|+|. +++++ .|+.|++||+ ++++
T Consensus 167 ----------~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 167 ----------PDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236 (391)
T ss_dssp ----------TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred ----------CCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE
Confidence 333333 333444444444311 1122345678899999986 67666 6899999999 7888
Q ss_pred eEeeecCCccEEEEEe--cCCEE-EEeecCcEEEEEeCC-CceeeeeeccCCCeE------EE-----------EecC--
Q 001123 452 LQDFQYLPFAVQCLCT--FGSQI-WVGYMNGIVQVLDLE-GNLLGGWVAHSSPVI------KM-----------AVGA-- 508 (1149)
Q Consensus 452 l~tl~gH~~~V~sls~--dG~~L-aSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~------sL-----------a~Dg-- 508 (1149)
+..+..|. .+.++++ +|++| ++++.|++|++||+. ++++..+..|..+.. .+ ..+.
T Consensus 237 ~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~ 315 (391)
T 1l0q_A 237 TARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITS 315 (391)
T ss_dssp EEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCS
T ss_pred EEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccccccccccccccccc
Confidence 88888775 4666654 68888 577889999999986 888888887766532 11 1111
Q ss_pred --------CeEEeecCCCceeeeeccCCCCCchhhhhhccccccceeeeeceEEEEEEEEeCC
Q 001123 509 --------GYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQ 563 (1149)
Q Consensus 509 --------~~LaSgS~DgtIRlWdl~sp~pld~~i~~~l~~re~~yt~~~~~~i~v~TWNv~~ 563 (1149)
-.+.+.+.|.++++|++..+... ........|.......+.+.-+|-++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~------~~~~~~~~~~~~g~y~~~~~~~~~~g 372 (391)
T 1l0q_A 316 GYIFLSEPVQFTDLSKDATEWKWDFGDGSSS------KKQNPTHTYSETGIYTVRLTVSNSNG 372 (391)
T ss_dssp SEEETTCCEEEEECCBSCSEEEEECSSSCEE------CSSSCEECCSSCEEEEEEEEEEETTE
T ss_pred ccccccceEEEEeCCCCceEEEEECCCCccc------CcCCCeEEeCCCceEEEEEEEECCCC
Confidence 23556677889999998643211 11122334555555555554455443
No 114
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.92 E-value=5.5e-23 Score=240.25 Aligned_cols=246 Identities=13% Similarity=0.150 Sum_probs=173.8
Q ss_pred eEEEEEee--CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEe
Q 001123 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (1149)
Q Consensus 134 ~l~~l~~~--~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS 210 (1149)
.+.+|+.. +..|.+ +.|++|+|||++++..... ...| ...|.|+++ ++.+|+||+
T Consensus 149 ~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~-------------------~~~h-~~~v~~~s~--~~~~l~sgs 206 (420)
T 4gga_A 149 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN-------------------MTSH-SARVGSLSW--NSYILSSGS 206 (420)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-------------------ECCC-SSCEEEEEE--ETTEEEEEE
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE-------------------EeCC-CCceEEEee--CCCEEEEEe
Confidence 34444444 344544 4699999999998776543 1123 678888877 468999999
Q ss_pred CCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEE
Q 001123 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (1149)
Q Consensus 211 ~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~ 289 (1149)
.|++|++||..... ..+.++.+|...|..+.++|+|. |++++.|++|++|+..+++..... ...
T Consensus 207 ~d~~i~~~d~~~~~-------~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~------~~~-- 271 (420)
T 4gga_A 207 RSGHIHHHDVRVAE-------HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP------LQT-- 271 (420)
T ss_dssp TTSEEEEEETTSSS-------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCC------SEE--
T ss_pred CCCceeEeeecccc-------eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccccccee------eee--
Confidence 99999999988654 34677899999999999999998 799999999999999765421100 000
Q ss_pred eeeccccccccccccceeeeecCCeEEEEEcCCCC-EEEEe---cCCceEEEEcCCccEEEEEecCCceeeEEeeccCCC
Q 001123 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSA---GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (1149)
Q Consensus 290 ~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~-~v~Sa---sd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~ 365 (1149)
... +...+.++++.+.+. .++++ .|++|++||+.+|+++..+..+.++
T Consensus 272 -------~~~----------~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v----------- 323 (420)
T 4gga_A 272 -------FTQ----------HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV----------- 323 (420)
T ss_dssp -------ECC----------CSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCE-----------
T ss_pred -------ecc----------cCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccce-----------
Confidence 001 124567777776544 44443 2688999999999887776543332
Q ss_pred ccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEE--eCCCeE
Q 001123 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTG--GANGLL 442 (1149)
Q Consensus 366 ~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSg--s~DgtI 442 (1149)
.++.+++++. ++++ +.|++|
T Consensus 324 ---------------------------------------------------------~~~~~~~~~~~lv~~sg~~d~~I 346 (420)
T 4gga_A 324 ---------------------------------------------------------CSILWSPHYKELISGHGFAQNQL 346 (420)
T ss_dssp ---------------------------------------------------------EEEEEETTTTEEEEEECTTTCCE
T ss_pred ---------------------------------------------------------eeeeecCCCCeEEEEEecCCCEE
Confidence 2334555544 5544 479999
Q ss_pred EEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCe
Q 001123 443 LQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPV 501 (1149)
Q Consensus 443 rlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V 501 (1149)
+|||. +++++.+|.+|.+.|+++++ ||++||||+.||+|+|||+. ..+.+....|...+
T Consensus 347 ~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~ 409 (420)
T 4gga_A 347 VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASA 409 (420)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC----------
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCc
Confidence 99999 89999999999999999976 79999999999999999974 45555555554433
No 115
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.92 E-value=9.9e-23 Score=228.75 Aligned_cols=267 Identities=11% Similarity=0.132 Sum_probs=187.4
Q ss_pred cceeEEEEEeeCC----e-EEE-eCCCCEEEEeCCC-CCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCC
Q 001123 131 IGCFLRTIVCTEE----Q-LWA-GGENGLRVWNLKE-LYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS 203 (1149)
Q Consensus 131 ~~~~l~~l~~~~~----~-l~a-g~D~tVrvWd~~~-g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg 203 (1149)
+...+..++.+.. . |++ +.|+.|+|||+.+ +..... ....| .++|.+++|+|++
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h-~~~v~~~~~~~~~ 98 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMH-TGPVLDVCWSDDG 98 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEE------------------EEEEC-SSCEEEEEECTTS
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEE------------------Eeccc-cCCEEEEEECcCC
Confidence 4567788888743 4 444 4589999999986 332211 11123 7899999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEE--eCCCc-EEEEECCCcEEEEeCCCcceeeecCC
Q 001123 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCI--SSYGD-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (1149)
Q Consensus 204 ~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVaf--SpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~ 280 (1149)
++|++|+.||+|++||+.++. ...+.+|.++|++++| +|++. |++|+.|++|++||+.+++....+..
T Consensus 99 ~~l~s~~~dg~v~iwd~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 169 (368)
T 3mmy_A 99 SKVFTASCDKTAKMWDLSSNQ---------AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL 169 (368)
T ss_dssp SEEEEEETTSEEEEEETTTTE---------EEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEEC
T ss_pred CEEEEEcCCCcEEEEEcCCCC---------ceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEec
Confidence 999999999999999998854 4557889999999999 88887 89999999999999987654333321
Q ss_pred CcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEecCCceeeEEee
Q 001123 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDM 360 (1149)
Q Consensus 281 ~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~ 360 (1149)
+ ..+.++.... ...+.+..++.+++||+.+............
T Consensus 170 ~------------------------------~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------- 211 (368)
T 3mmy_A 170 P------------------------------ERCYCADVIY-PMAVVATAERGLIVYQLENQPSEFRRIESPL------- 211 (368)
T ss_dssp S------------------------------SCEEEEEEET-TEEEEEEGGGCEEEEECSSSCEEEEECCCSC-------
T ss_pred C------------------------------CCceEEEecC-CeeEEEeCCCcEEEEEeccccchhhhccccc-------
Confidence 1 1122222222 2334455678899999987653322110000
Q ss_pred ccCCCccccccceeeEEecCCCCccceeeeeecccc----ceEeecCCcEEEEeecc---------cccCCCC-------
Q 001123 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR----NAIMGAADAVRRVAAKG---------GFGDDNR------- 420 (1149)
Q Consensus 361 S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~----~~i~G~~d~v~rv~~~g---------~~~~~~~------- 420 (1149)
......+.+..... .++++..++..++|+.. .+..|..
T Consensus 212 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (368)
T 3mmy_A 212 ----------------------KHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSA 269 (368)
T ss_dssp ----------------------SSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CC
T ss_pred ----------------------cCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccc
Confidence 00001111222111 26777777777776521 2334433
Q ss_pred -----ceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEe
Q 001123 421 -----RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (1149)
Q Consensus 421 -----~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD 485 (1149)
.|.+++++|++. |++|+.||+|++||+ ++++++++.+|...|+++++ +|++|++|+.|+..+.|+
T Consensus 270 ~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 270 PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp CEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred cccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccccc
Confidence 699999999985 899999999999999 78999999999999999976 799999999998666666
No 116
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.92 E-value=5.2e-24 Score=247.66 Aligned_cols=261 Identities=14% Similarity=0.067 Sum_probs=156.2
Q ss_pred eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcC--------CCCEEEEEeCCCeEEEE
Q 001123 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDE--------ASGVVWSGHRDGRIMCW 218 (1149)
Q Consensus 148 g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~--------dg~~LaSGS~DGtIRvW 218 (1149)
+.|++|||||++++..... .....+.| .+.|++|+|+| ||++|||||.|++||+|
T Consensus 108 ~~d~~v~lw~~~~~~~~~~----------------~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W 171 (393)
T 4gq1_A 108 CQDNTVRLIITKNETIITQ----------------HVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW 171 (393)
T ss_dssp ETTSCEEEEEEETTEEEEE----------------EEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred eCCCcEEEEECCCCcccee----------------eeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence 5699999999887654321 00111223 88999999998 89999999999999999
Q ss_pred ECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc--EEEEECCCcEEEEeCCCcceeeecCCCccee--eEEEeeecc
Q 001123 219 KMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHT--AALIVERSY 294 (1149)
Q Consensus 219 dl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~--L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~--~a~~~~~~~ 294 (1149)
|+.++. +...+.+|.++|.+|+|+|++. |++|+.|++||+||+.+++............ ..+......
T Consensus 172 d~~~~~--------~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~ 243 (393)
T 4gq1_A 172 RLTDEG--------PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP 243 (393)
T ss_dssp EEETTE--------EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG
T ss_pred ECCCCc--------eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc
Confidence 997653 3667789999999999999874 7899999999999998865443322111100 000000000
Q ss_pred ccccccccccceeeeecCCeEEEEEc-CCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccc
Q 001123 295 IDLRSHLSVNGFSSILTSDIKNLLSD-HSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (1149)
Q Consensus 295 ~~l~~~~~~~g~~~~~~~dv~~las~-~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~ 372 (1149)
... ......+...+..+.+. +++..+++++ |+++++||+.+++....+..+...+..+.+.+
T Consensus 244 ~~~------~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~---------- 307 (393)
T 4gq1_A 244 LVN------TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLP---------- 307 (393)
T ss_dssp GC------------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSC----------
T ss_pred cee------eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcc----------
Confidence 000 00000122345555554 6778888776 67899999999887766654332211111111
Q ss_pred eeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEc-CCCc-EEEEeCCCeEEEEeC-CC
Q 001123 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS-IDGM-IWTGGANGLLLQWDP-NG 449 (1149)
Q Consensus 373 ~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s-~Dg~-laSgs~DgtIrlWD~-tG 449 (1149)
+... ...+...+.++.++ .++. +++|+.||+|+|||+ +|
T Consensus 308 ---------------------~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~ 349 (393)
T 4gq1_A 308 ---------------------NVQG-----------------ISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK 349 (393)
T ss_dssp ---------------------SEEE-----------------ECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT
T ss_pred ---------------------cccc-----------------ccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC
Confidence 0000 00001111122222 2444 568889999999999 78
Q ss_pred CeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC
Q 001123 450 NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 450 ~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~ 487 (1149)
+++..+.+|..+|.++++ ||++||+|+.|| |.+|.+.
T Consensus 350 ~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 350 DSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp TCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred cEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 999999999999999976 799999999877 5566643
No 117
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.91 E-value=3e-23 Score=240.25 Aligned_cols=246 Identities=17% Similarity=0.136 Sum_probs=182.4
Q ss_pred eEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeC-CCc-EEEEECCCcEEEEeCC
Q 001123 194 VMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGIKIWPWE 270 (1149)
Q Consensus 194 V~~lafs~dg~-~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSp-dG~-L~SGS~DgTIRVWdl~ 270 (1149)
..+++++|+.. ++++|+.||.|++|++.... ........+.||.++|++++|+| ++. |+||+.||+|+|||+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~----~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTG----RVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP 112 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCE----ECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCC----CCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc
Confidence 34688888864 55678999999999986531 11123456789999999999999 776 7999999999999998
Q ss_pred CcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCC-CEEEEec-CCceEEEEcCCccEEEEE
Q 001123 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTRELLKVF 348 (1149)
Q Consensus 271 t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~-~~v~Sas-d~tIrLWD~~TG~~L~~l 348 (1149)
++....... .... .+.+| ...+.++++.+++ ..+++++ |++|++||+.+++++..+
T Consensus 113 ~~~~~~~~~---~~~~---------~~~~h----------~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 170 (402)
T 2aq5_A 113 DGGLVLPLR---EPVI---------TLEGH----------TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL 170 (402)
T ss_dssp TTCCSSCBC---SCSE---------EEECC----------SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CCCCccccC---CceE---------EecCC----------CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEE
Confidence 753211100 0000 01122 2668888998887 5777765 688999999988776554
Q ss_pred ecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEc
Q 001123 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (1149)
Q Consensus 349 ~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s 428 (1149)
.. ..|...|.+++++
T Consensus 171 ~~-----------------------------------------------------------------~~~~~~v~~~~~~ 185 (402)
T 2aq5_A 171 GP-----------------------------------------------------------------DVHPDTIYSVDWS 185 (402)
T ss_dssp CT-----------------------------------------------------------------TTCCSCEEEEEEC
T ss_pred ec-----------------------------------------------------------------CCCCCceEEEEEC
Confidence 10 1233456678889
Q ss_pred CCCc-EEEEeCCCeEEEEeC-CCCeeEee-ecCCcc-EEEEEe--cCCEEEEe---ecCcEEEEEeCC-Cce-eeeee-c
Q 001123 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDF-QYLPFA-VQCLCT--FGSQIWVG---YMNGIVQVLDLE-GNL-LGGWV-A 496 (1149)
Q Consensus 429 ~Dg~-laSgs~DgtIrlWD~-tG~~l~tl-~gH~~~-V~sls~--dG~~LaSG---s~DGtIrlWD~~-G~~-l~~l~-g 496 (1149)
|+|. +++|+.|++|++||+ +++++..+ .+|... +.++.+ +|++|++| +.|+.|++||+. ++. +.... .
T Consensus 186 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~ 265 (402)
T 2aq5_A 186 RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD 265 (402)
T ss_dssp TTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC
T ss_pred CCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc
Confidence 8886 899999999999999 78999998 788775 676654 78999999 799999999986 433 33333 6
Q ss_pred cCCCeEEEE--ecCCeEE-eecCCCceeeeeccCCCC
Q 001123 497 HSSPVIKMA--VGAGYIF-TLANHGGIRGWNVTSPGP 530 (1149)
Q Consensus 497 H~~~V~sLa--~Dg~~La-SgS~DgtIRlWdl~sp~p 530 (1149)
|...|.+++ +++++|+ +++.|++|++|++....+
T Consensus 266 ~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 266 TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 788899887 5888886 566899999999987654
No 118
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.91 E-value=1.4e-22 Score=235.10 Aligned_cols=237 Identities=16% Similarity=0.180 Sum_probs=174.9
Q ss_pred ceeEEEEEee--CCeEEEe-CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEE
Q 001123 132 GCFLRTIVCT--EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (1149)
Q Consensus 132 ~~~l~~l~~~--~~~l~ag-~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaS 208 (1149)
...+..++.. +..+++| .|+.|++||++++..... + ..| ...|.+++| ++.+|++
T Consensus 134 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----------------~--~~~-~~~v~~~~~--~~~~l~~ 191 (401)
T 4aez_A 134 STYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRT-----------------M--AGH-QARVGCLSW--NRHVLSS 191 (401)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-----------------E--CCC-SSCEEEEEE--ETTEEEE
T ss_pred CCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEE-----------------e--cCC-CCceEEEEE--CCCEEEE
Confidence 3455566665 4555554 599999999987765433 1 123 789999999 5679999
Q ss_pred EeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeE
Q 001123 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (1149)
Q Consensus 209 GS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a 287 (1149)
|+.||+|++||+.... .....+.+|.+.|++++|+|++. |++|+.|++|++||+.+++....+..
T Consensus 192 ~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~------- 257 (401)
T 4aez_A 192 GSRSGAIHHHDVRIAN-------HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN------- 257 (401)
T ss_dssp EETTSEEEEEETTSSS-------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECC-------
T ss_pred EcCCCCEEEEecccCc-------ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecC-------
Confidence 9999999999998533 34677899999999999999997 89999999999999987654433321
Q ss_pred EEeeeccccccccccccceeeeecCCeEEEEEcCCC-CEEEEec---CCceEEEEcCCccEEEEEecCCceeeEEeeccC
Q 001123 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG---FLSFALWDARTRELLKVFNIDGQIENRVDMSLL 363 (1149)
Q Consensus 288 ~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~-~~v~Sas---d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~ 363 (1149)
| ...+.++++++++ ..+++++ +++|++||+.+++++..+..+
T Consensus 258 ------------~----------~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~------------ 303 (401)
T 4aez_A 258 ------------H----------NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG------------ 303 (401)
T ss_dssp ------------C----------SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS------------
T ss_pred ------------C----------cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC------------
Confidence 1 1456677777755 4566654 788999999998877665321
Q ss_pred CCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEE--EeCCC
Q 001123 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWT--GGANG 440 (1149)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laS--gs~Dg 440 (1149)
..+.++++++++. +++ |+.||
T Consensus 304 --------------------------------------------------------~~v~~~~~s~~~~~l~~~~g~~dg 327 (401)
T 4aez_A 304 --------------------------------------------------------SQVTSLIWSPHSKEIMSTHGFPDN 327 (401)
T ss_dssp --------------------------------------------------------SCEEEEEECSSSSEEEEEECTTTC
T ss_pred --------------------------------------------------------CcEEEEEECCCCCeEEEEeecCCC
Confidence 1244667888876 566 44899
Q ss_pred eEEEEeC-CCCee--EeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-Cceeeee
Q 001123 441 LLLQWDP-NGNRL--QDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGW 494 (1149)
Q Consensus 441 tIrlWD~-tG~~l--~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l 494 (1149)
+|++||+ +++.. ..+.+|...|.++++ +|++|++|+.||+|++||+. ++.+...
T Consensus 328 ~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 328 NLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred cEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 9999999 66544 457799999998876 69999999999999999986 6655443
No 119
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.7e-23 Score=235.95 Aligned_cols=259 Identities=7% Similarity=0.038 Sum_probs=176.0
Q ss_pred CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001123 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (1149)
Q Consensus 142 ~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl 220 (1149)
+..+++ +.|++|++||++++..... +. ...|.+++++|+ ++||+.|++|++|+.
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~---------------------~~-~~~v~~~~~~~~---~~s~s~D~~i~~w~~ 102 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKTITT---------------------IT-TPNPRTGGEHPA---IISRGPCNRLLLLYP 102 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSCEEE---------------------EE-EECCCTTCCCCS---EEEECSTTEEEEEET
T ss_pred CCEEEEECCCCcEEEEECCCCcEEEE---------------------Ee-cCCceeeeeCCc---eEEecCCCeEEEEEc
Confidence 344554 4699999999988775543 22 346777888887 999999999999987
Q ss_pred CCCCC-CCCCCccceEEe-ecCCCCEEEEEEeC--CCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccc
Q 001123 221 NARLL-DSDDGFGEVLSW-QAHRGPVLSLCISS--YGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (1149)
Q Consensus 221 ~~g~~-~~~~~~~~~~~l-~GH~~~VtsVafSp--dG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~ 295 (1149)
..... .+......+..+ .+|.++|++++|+| +++ |+|||.||+|++||+++++........
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-------------- 168 (343)
T 3lrv_A 103 GNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAK-------------- 168 (343)
T ss_dssp TTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCC--------------
T ss_pred cCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecC--------------
Confidence 64210 000111113333 37889999999999 887 789999999999999876542211100
Q ss_pred cccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEE-EEEecCCceeeEEeeccCCCccccccce
Q 001123 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELL-KVFNIDGQIENRVDMSLLPDFAMEDEFK 373 (1149)
Q Consensus 296 ~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L-~~l~~~g~~~~~v~~S~~~~~~~~~~~~ 373 (1149)
....+.++++++++..+++++ |++|++||+++++++ ..|..
T Consensus 169 --------------~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~----------------------- 211 (343)
T 3lrv_A 169 --------------SDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV----------------------- 211 (343)
T ss_dssp --------------SSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC-----------------------
T ss_pred --------------CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec-----------------------
Confidence 113467788889888888864 688999999887543 22211
Q ss_pred eeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCe
Q 001123 374 TKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNR 451 (1149)
Q Consensus 374 ~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~ 451 (1149)
.|...|.+++|+|+|. |++|+ |++|++||+ ++++
T Consensus 212 -------------------------------------------~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~ 247 (343)
T 3lrv_A 212 -------------------------------------------DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVG 247 (343)
T ss_dssp -------------------------------------------CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTT
T ss_pred -------------------------------------------cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCc
Confidence 2556678889999987 67877 559999999 6776
Q ss_pred eEeeec---CCccEE--EEEe--cCCEEEEeec-CcEEEEEeCC-CceeeeeeccCCCeEEEE--e---cCCeEEeecCC
Q 001123 452 LQDFQY---LPFAVQ--CLCT--FGSQIWVGYM-NGIVQVLDLE-GNLLGGWVAHSSPVIKMA--V---GAGYIFTLANH 517 (1149)
Q Consensus 452 l~tl~g---H~~~V~--sls~--dG~~LaSGs~-DGtIrlWD~~-G~~l~~l~gH~~~V~sLa--~---Dg~~LaSgS~D 517 (1149)
++++.. |...+. ++++ +|++|++|+. |+.|+||+.+ +... |.. .++..++ + +.+.+++++.|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~l~~~~~d 323 (343)
T 3lrv_A 248 TLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN--WTK--DEESALCLQSDTADFTDMDVVCGD 323 (343)
T ss_dssp CBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS--EEE--EEEEECCC----CCCCEEEEEEET
T ss_pred ceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc--eEe--cCceeEecCccccccceeEEEecC
Confidence 655543 444443 3554 6999999998 9999999975 2211 111 3344443 2 66788888889
Q ss_pred Cceeeee
Q 001123 518 GGIRGWN 524 (1149)
Q Consensus 518 gtIRlWd 524 (1149)
+++++|-
T Consensus 324 ~~~~~~~ 330 (343)
T 3lrv_A 324 GGIAAIL 330 (343)
T ss_dssp TEEEEEE
T ss_pred CceEEEE
Confidence 9888875
No 120
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6.2e-23 Score=241.97 Aligned_cols=238 Identities=10% Similarity=0.025 Sum_probs=181.5
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEe----------------------------------
Q 001123 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW---------------------------------- 237 (1149)
Q Consensus 192 ~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l---------------------------------- 237 (1149)
.++.|++|+++|++|+++ .++.|++||+.+|.. ...+..|
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNH-----WEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKS 78 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTE-----EEEEEEEECCC------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCc-----ceeeeecCCccccccccccccchhhcccccccccccccccc
Confidence 478899999999977765 588999999987750 0011222
Q ss_pred --------------------ecCCCCEEEEEEeCCCc-E-EEEECCCcEEEEeCC--CcceeeecCCCcceeeEEEeeec
Q 001123 238 --------------------QAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWE--AIEKALSLKPEERHTAALIVERS 293 (1149)
Q Consensus 238 --------------------~GH~~~VtsVafSpdG~-L-~SGS~DgTIRVWdl~--t~~~~~~l~~~~~~~~a~~~~~~ 293 (1149)
.+|.+.|++++|+|+|+ | ++|+.||+|+|||+. +++....+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~------------- 145 (450)
T 2vdu_B 79 NKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR------------- 145 (450)
T ss_dssp ---------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE-------------
T ss_pred CcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec-------------
Confidence 35667899999999997 5 799999999999997 5543322210
Q ss_pred cccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccc
Q 001123 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (1149)
Q Consensus 294 ~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~ 372 (1149)
+ .....+.++++++++..+++++ ++.+++||+.+++.... .
T Consensus 146 ------~--------~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~------~------------------ 187 (450)
T 2vdu_B 146 ------F--------CFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKF------T------------------ 187 (450)
T ss_dssp ------E--------ECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSC------C------------------
T ss_pred ------c--------cCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccc------c------------------
Confidence 0 0124577888999988888775 57799999876532110 0
Q ss_pred eeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCC---Cc-EEEEeCCCeEEEEeC-
Q 001123 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID---GM-IWTGGANGLLLQWDP- 447 (1149)
Q Consensus 373 ~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~D---g~-laSgs~DgtIrlWD~- 447 (1149)
...+.+|...|.+++++|+ +. |++|+.|++|++||+
T Consensus 188 ---------------------------------------~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~ 228 (450)
T 2vdu_B 188 ---------------------------------------QEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYP 228 (450)
T ss_dssp ---------------------------------------CCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEES
T ss_pred ---------------------------------------ceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECC
Confidence 0013345567888899998 85 889999999999999
Q ss_pred CCCeeEe-eecCCccEEEEEe-cCCEEEEeecCcEEEEEeCC-Cceeeeeecc-------------------------CC
Q 001123 448 NGNRLQD-FQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH-------------------------SS 499 (1149)
Q Consensus 448 tG~~l~t-l~gH~~~V~sls~-dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH-------------------------~~ 499 (1149)
+++++.. +.+|...|.++++ +|++|++|+.|++|+|||+. |+++..+..| ..
T Consensus 229 ~~~~~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (450)
T 2vdu_B 229 QCFIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEF 308 (450)
T ss_dssp CTTCEEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCC
T ss_pred CCceeeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceE
Confidence 7888887 6689999999977 79999999999999999976 8888877643 34
Q ss_pred CeEEEE--ecCCeEEeec-CCCceeeeec
Q 001123 500 PVIKMA--VGAGYIFTLA-NHGGIRGWNV 525 (1149)
Q Consensus 500 ~V~sLa--~Dg~~LaSgS-~DgtIRlWdl 525 (1149)
.|.+++ +++++|++++ .|++|++|++
T Consensus 309 ~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 309 AVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred EEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 677777 5899999998 8999999998
No 121
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.91 E-value=2.5e-22 Score=222.00 Aligned_cols=234 Identities=14% Similarity=0.160 Sum_probs=165.3
Q ss_pred ceeEEEEEee--CCeEEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEE
Q 001123 132 GCFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (1149)
Q Consensus 132 ~~~l~~l~~~--~~~l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaS 208 (1149)
+..+..++.. ++.+++ +.|++|++||++++..... ...| ...+.+++ +++.+|++
T Consensus 67 ~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~-------------------~~~h-~~~~~~~~--~~~~~l~s 124 (318)
T 4ggc_A 67 GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN-------------------MTSH-SARVGSLS--WNSYILSS 124 (318)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-------------------EECC-SSCEEEEE--EETTEEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE-------------------ecCc-cceEEEee--cCCCEEEE
Confidence 3445555555 445555 4699999999998776543 1123 55666655 46689999
Q ss_pred EeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeE
Q 001123 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (1149)
Q Consensus 209 GS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a 287 (1149)
|+.|+.+++|+...+. .....+.+|...+..++++++|+ |+||+.|++|++||+.+++........
T Consensus 125 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------ 191 (318)
T 4ggc_A 125 GSRSGHIHHHDVRVAE-------HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT------ 191 (318)
T ss_dssp EETTSEEEEEETTSSS-------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEE------
T ss_pred EecCCceEeeecCCCc-------eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceee------
Confidence 9999999999988754 34677899999999999999997 789999999999999875432111000
Q ss_pred EEeeeccccccccccccceeeeecCCeEEEEEcCCCC-EEE--Eec-CCceEEEEcCCccEEEEEecCCceeeEEeeccC
Q 001123 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVW--SAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLL 363 (1149)
Q Consensus 288 ~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~-~v~--Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~ 363 (1149)
.. ...+.+..++..+.+. .+. +++ +++|++||..++.........
T Consensus 192 ---------~~----------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~------------ 240 (318)
T 4ggc_A 192 ---------FT----------QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH------------ 240 (318)
T ss_dssp ---------EC----------CCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECS------------
T ss_pred ---------ec----------ccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccce------------
Confidence 00 0113345555554433 222 222 468999999877654433221
Q ss_pred CCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEE--EeCCC
Q 001123 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWT--GGANG 440 (1149)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laS--gs~Dg 440 (1149)
..+..+.+++++. +++ |+.|+
T Consensus 241 --------------------------------------------------------~~v~~~~~~~~~~~~~~~sg~~d~ 264 (318)
T 4ggc_A 241 --------------------------------------------------------SQVCSILWSPHYKELISGHGFAQN 264 (318)
T ss_dssp --------------------------------------------------------SCEEEEEEETTTTEEEEEECTTTC
T ss_pred --------------------------------------------------------eeeeeeeecccccceEEEEEcCCC
Confidence 1223344555543 444 45799
Q ss_pred eEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC
Q 001123 441 LLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 441 tIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~ 487 (1149)
+|++||+ +|++++++.+|...|+++++ +|++||||+.||+|+|||+.
T Consensus 265 ~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 265 QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 9999999 89999999999999999976 79999999999999999974
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.91 E-value=5.2e-22 Score=230.61 Aligned_cols=261 Identities=11% Similarity=0.048 Sum_probs=195.2
Q ss_pred CCeEEE-e-CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 001123 142 EEQLWA-G-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRDGRIMCW 218 (1149)
Q Consensus 142 ~~~l~a-g-~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~~LaSGS~DGtIRvW 218 (1149)
++.+++ + .|++|++||++++..... .. . ....+ .+.|.+++|++++.++++++.|++|++|
T Consensus 133 ~~~~~~~~~~~~~i~~~d~~~g~~~~~------------~~---~-~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~ 196 (433)
T 3bws_A 133 NTRLAIPLLEDEGMDVLDINSGQTVRL------------SP---P-EKYKKKLGFVETISIPEHNELWVSQMQANAVHVF 196 (433)
T ss_dssp SSEEEEEBTTSSSEEEEETTTCCEEEE------------CC---C-HHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEE
T ss_pred CCeEEEEeCCCCeEEEEECCCCeEeee------------cC---c-ccccccCCceeEEEEcCCCEEEEEECCCCEEEEE
Confidence 455655 3 377899999988765432 00 0 01112 6789999999999999999999999999
Q ss_pred ECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-E-EEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeecccc
Q 001123 219 KMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (1149)
Q Consensus 219 dl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L-~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~ 296 (1149)
|+.++. ....+.+|...|.+++|+|+|+ | ++++.|++|++||+.+++....+..
T Consensus 197 d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~---------------- 252 (433)
T 3bws_A 197 DLKTLA--------YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK---------------- 252 (433)
T ss_dssp ETTTCC--------EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC----------------
T ss_pred ECCCce--------EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC----------------
Confidence 998765 3667889999999999999997 5 4666899999999987654322211
Q ss_pred ccccccccceeeeecCCeEEEEEcCCCCEEEEec---------CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCcc
Q 001123 297 LRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---------FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (1149)
Q Consensus 297 l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas---------d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~ 367 (1149)
...+..+++++++..+++++ ++.|++||+.+++++..+...
T Consensus 253 --------------~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~---------------- 302 (433)
T 3bws_A 253 --------------IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP---------------- 302 (433)
T ss_dssp --------------CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE----------------
T ss_pred --------------CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCC----------------
Confidence 02245667778777777665 568999999988765543210
Q ss_pred ccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-E-EEEeCCCeEEEE
Q 001123 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-I-WTGGANGLLLQW 445 (1149)
Q Consensus 368 ~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-l-aSgs~DgtIrlW 445 (1149)
..+..++++|++. + ++++.|++|++|
T Consensus 303 ----------------------------------------------------~~~~~~~~~~~g~~l~~~~~~~~~v~v~ 330 (433)
T 3bws_A 303 ----------------------------------------------------GNKRHIVSGNTENKIYVSDMCCSKIEVY 330 (433)
T ss_dssp ----------------------------------------------------ECEEEEEECSSTTEEEEEETTTTEEEEE
T ss_pred ----------------------------------------------------CCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 0123456788874 4 567889999999
Q ss_pred eC-CCCeeEeeecCCccEEEEEe--cCCEEEEeec---------------CcEEEEEeCC-CceeeeeeccCCCeEEEE-
Q 001123 446 DP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYM---------------NGIVQVLDLE-GNLLGGWVAHSSPVIKMA- 505 (1149)
Q Consensus 446 D~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~---------------DGtIrlWD~~-G~~l~~l~gH~~~V~sLa- 505 (1149)
|+ +++++..+. +...+.++++ +|++|++++. ||.|++||++ ++++..+.++ ..+.+++
T Consensus 331 d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~ 408 (433)
T 3bws_A 331 DLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDV 408 (433)
T ss_dssp ETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEE
T ss_pred ECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEE
Confidence 99 678887775 6677888865 6899998886 5799999985 7888887764 4688887
Q ss_pred -ecCCeEEeec-CCCceeeeecc
Q 001123 506 -VGAGYIFTLA-NHGGIRGWNVT 526 (1149)
Q Consensus 506 -~Dg~~LaSgS-~DgtIRlWdl~ 526 (1149)
+||++|++++ .|++|++|++.
T Consensus 409 s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 409 SPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp CTTSCEEEEEETTTTEEEEEEET
T ss_pred cCCCCEEEEEECCCCeEEEEEec
Confidence 5899998776 59999999975
No 123
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.4e-22 Score=228.82 Aligned_cols=240 Identities=11% Similarity=0.136 Sum_probs=174.2
Q ss_pred cceeEEEEEee--CCeEEEe-CCCCEEEEeCCCC--CCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCC--
Q 001123 131 IGCFLRTIVCT--EEQLWAG-GENGLRVWNLKEL--YDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEA-- 202 (1149)
Q Consensus 131 ~~~~l~~l~~~--~~~l~ag-~D~tVrvWd~~~g--~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~d-- 202 (1149)
+...+..++.+ +..|.++ .|++|+|||+.+. .... .+.+ .++|.+++|+++
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---------------------~~~~h~~~v~~~~~~~~~~ 68 (379)
T 3jrp_A 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLID---------------------TLTGHEGPVWRVDWAHPKF 68 (379)
T ss_dssp CCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEE---------------------EECCCSSCEEEEEECCGGG
T ss_pred CcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeee---------------------EecCCCCcEEEEEeCCCCC
Confidence 33456666665 4556654 6999999998732 2221 1223 789999999977
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCC--Cc-EEEEECCCcEEEEeCCCcceeeecC
Q 001123 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEAIEKALSLK 279 (1149)
Q Consensus 203 g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpd--G~-L~SGS~DgTIRVWdl~t~~~~~~l~ 279 (1149)
+.+|+||+.||+|++||+.++.. .....+.+|.+.|++++|+|+ +. |++|+.|++|++||+.+........
T Consensus 69 ~~~l~s~~~dg~v~iwd~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 142 (379)
T 3jrp_A 69 GTILASCSYDGKVLIWKEENGRW------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 142 (379)
T ss_dssp CSEEEEEETTSCEEEEEEETTEE------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE
T ss_pred CCEEEEeccCCEEEEEEcCCCce------eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE
Confidence 99999999999999999987541 246678899999999999999 76 8999999999999997653211100
Q ss_pred CCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcC-------------CCCEEEEec-CCceEEEEcCCccEE
Q 001123 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-------------SRAKVWSAG-FLSFALWDARTRELL 345 (1149)
Q Consensus 280 ~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~-------------~~~~v~Sas-d~tIrLWD~~TG~~L 345 (1149)
+.+| ...+.++++.+ ++..+++++ +++|++||+++++..
T Consensus 143 -----------------~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 195 (379)
T 3jrp_A 143 -----------------IDAH----------AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT 195 (379)
T ss_dssp -----------------EECC----------TTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE
T ss_pred -----------------ecCC----------CCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc
Confidence 0011 24466666666 466777665 678999998765422
Q ss_pred EEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEE
Q 001123 346 KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEAL 425 (1149)
Q Consensus 346 ~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~av 425 (1149)
..+. ..+.+|...|.++
T Consensus 196 ~~~~---------------------------------------------------------------~~~~~h~~~v~~~ 212 (379)
T 3jrp_A 196 YVLE---------------------------------------------------------------STLEGHSDWVRDV 212 (379)
T ss_dssp EEEE---------------------------------------------------------------EEECCCSSCEEEE
T ss_pred eeeE---------------------------------------------------------------EEEecccCcEeEE
Confidence 1110 0133556678888
Q ss_pred EEcCC---Cc-EEEEeCCCeEEEEeC-CCC---eeEe--eecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC
Q 001123 426 TTSID---GM-IWTGGANGLLLQWDP-NGN---RLQD--FQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 426 a~s~D---g~-laSgs~DgtIrlWD~-tG~---~l~t--l~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~ 487 (1149)
+++|+ +. +++++.||+|++||+ +++ .... ...|...|.++++ +|++|++|+.||.|++||++
T Consensus 213 ~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 213 AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp EECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred EECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 99998 65 789999999999999 543 2222 3348889998876 79999999999999999975
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.9e-23 Score=234.56 Aligned_cols=231 Identities=8% Similarity=-0.032 Sum_probs=167.8
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcceeeec
Q 001123 199 GDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSL 278 (1149)
Q Consensus 199 fs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~~~~~l 278 (1149)
+.+++.+|+||+.||+|++||+.++.+ +..+. .+.|.+++|+|+ ++|||.|++|++|+.........+
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~--------~~~~~--~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~ 111 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKT--------ITTIT--TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDS 111 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSC--------EEEEE--EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEET
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcE--------EEEEe--cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeec
Confidence 345788999999999999999988752 44454 578899999997 999999999999998653222211
Q ss_pred CCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcC--CCCEEEEec-CCceEEEEcCCccEEEEEecCCcee
Q 001123 279 KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH--SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIE 355 (1149)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~--~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~ 355 (1149)
.... .+.. + ...+...+.++++.+ ++..+++++ |++|++||+++++++..+..+
T Consensus 112 ~~~~-~~~~------------~------~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~---- 168 (343)
T 3lrv_A 112 KTNK-VLRE------------I------EVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAK---- 168 (343)
T ss_dssp TTCC-EEEE------------E------ECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCC----
T ss_pred CCcc-eeEE------------e------ecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecC----
Confidence 1100 0000 0 001125688888888 888888765 678999999988775443211
Q ss_pred eEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EE
Q 001123 356 NRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IW 434 (1149)
Q Consensus 356 ~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-la 434 (1149)
+...+.+++++|||. ++
T Consensus 169 --------------------------------------------------------------~~~~i~~~~~~pdg~~la 186 (343)
T 3lrv_A 169 --------------------------------------------------------------SDVEYSSGVLHKDSLLLA 186 (343)
T ss_dssp --------------------------------------------------------------SSCCCCEEEECTTSCEEE
T ss_pred --------------------------------------------------------------CCCceEEEEECCCCCEEE
Confidence 112355778899987 67
Q ss_pred EEeCCCeEEEEeC-CCCee-Eeeec-CCccEEEEEe--cCCEEEEeecCcEEEEEeCC-Cceeeeee---ccCCCeE--E
Q 001123 435 TGGANGLLLQWDP-NGNRL-QDFQY-LPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWV---AHSSPVI--K 503 (1149)
Q Consensus 435 Sgs~DgtIrlWD~-tG~~l-~tl~g-H~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l~---gH~~~V~--s 503 (1149)
+|+.||+|++||+ +++++ .++.+ |..+|+++++ +|.+|++|+ |++|++||+. ++++..+. .|...+. +
T Consensus 187 sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (343)
T 3lrv_A 187 LYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVT 265 (343)
T ss_dssp EECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEE
T ss_pred EEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceE
Confidence 8999999999999 78877 88888 9999999976 689999999 5599999976 55554444 3555554 3
Q ss_pred EE--ecCCeEEeecC-CCceeeeeccC
Q 001123 504 MA--VGAGYIFTLAN-HGGIRGWNVTS 527 (1149)
Q Consensus 504 La--~Dg~~LaSgS~-DgtIRlWdl~s 527 (1149)
++ ++|++|++++. |+.|++|++..
T Consensus 266 ~~~~~~g~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 266 YDIDDSGKNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEECCCCCEEEEecCCCCcEEEEEEcc
Confidence 55 68999999998 99999999854
No 125
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.5e-23 Score=250.38 Aligned_cols=116 Identities=9% Similarity=0.034 Sum_probs=90.8
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCC-----CEEEEEEeCCCc-EEEEECCCcE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG-----PVLSLCISSYGD-LWSGSEGGGI 264 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~-----~VtsVafSpdG~-L~SGS~DgTI 264 (1149)
...|.+++|||||++||+++.||+|++||.++ ....+. |.. .|.+++|||||+ |++|+.||+|
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----------~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtV 153 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----------MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGEL 153 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTE----------EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----------eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEE
Confidence 56899999999999999999999999999643 245566 766 499999999998 8999999999
Q ss_pred EEEeCCCcce-------eeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEE
Q 001123 265 KIWPWEAIEK-------ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALW 337 (1149)
Q Consensus 265 RVWdl~t~~~-------~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLW 337 (1149)
||||+.++.. ..++..+ ..+|. ..|.++++++++ .++++.|++|++|
T Consensus 154 kIWd~~~~~l~~~~~i~l~ti~~~---------------~~gh~----------~~V~sVawSPdg-Laass~D~tVrlW 207 (588)
T 2j04_A 154 QFFSIRKNSENTPEFYFESSIRLS---------------DAGSK----------DWVTHIVWYEDV-LVAALSNNSVFSM 207 (588)
T ss_dssp EEEECCCCTTTCCCCEEEEEEECS---------------CTTCC----------CCEEEEEEETTE-EEEEETTCCEEEE
T ss_pred EEEECCCCccccccceeeeeeecc---------------ccccc----------ccEEEEEEcCCc-EEEEeCCCeEEEE
Confidence 9999987531 1111000 01121 468889999988 7777789999999
Q ss_pred EcCCcc
Q 001123 338 DARTRE 343 (1149)
Q Consensus 338 D~~TG~ 343 (1149)
|+.+++
T Consensus 208 d~~~~~ 213 (588)
T 2j04_A 208 TVSASS 213 (588)
T ss_dssp CCCSSS
T ss_pred ECCCCc
Confidence 998765
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.89 E-value=5.9e-22 Score=225.68 Aligned_cols=286 Identities=11% Similarity=0.071 Sum_probs=161.8
Q ss_pred ccccccccccCCCCCccccCCCCccccccceeEEEEEee------CC--eEEEeCCCCEEEEeCCCCC---CCCcccccc
Q 001123 103 FKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCT------EE--QLWAGGENGLRVWNLKELY---DESESDSVS 171 (1149)
Q Consensus 103 ~~~~~~~~~~~~~p~~l~~~~~pl~e~~~~~~l~~l~~~------~~--~l~ag~D~tVrvWd~~~g~---~~~~~~~~~ 171 (1149)
-.+|.-+.++|+ .|.+ -+-|++. .|.|.-.+... .+ =+.+..+.+|++|+..++. ...++ .+
T Consensus 12 ~~~~~~~~~~~~---~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~--~~ 84 (356)
T 2w18_A 12 AELPASDSINPG---NLQL-VSELKNP-SGSCSVDVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTW--HF 84 (356)
T ss_dssp ---------------CEEE-EEEECCC-CSSCEEEEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEE--EC
T ss_pred ccCccccCcCcc---eeee-eehhcCC-CCCeEEEEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEE--ec
Confidence 344555555444 2221 1345555 56676677665 22 2345778999999998872 22110 00
Q ss_pred ccC------CCCCCCCC-Cce-eeeecCCceEEEEEcCC----CCEEEEEeC--------------------CCeEEEEE
Q 001123 172 VSK------SKGEDGTA-PFK-ESVKGVSSVMCMVGDEA----SGVVWSGHR--------------------DGRIMCWK 219 (1149)
Q Consensus 172 ~~~------~~~d~~~~-~~~-~s~~G~~~V~~lafs~d----g~~LaSGS~--------------------DGtIRvWd 219 (1149)
... ...|.--. +.. ..++ .+.|.+|+|+|| ++++++|+. |++|++|+
T Consensus 85 ~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~ 163 (356)
T 2w18_A 85 AEVPVLQIVPVPDVYNLVCVALGNLE-IREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMT 163 (356)
T ss_dssp CSSCEEEECCCTTCCSCEEEEECSSS-EEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEE
T ss_pred cCceeEEEEEcCcccceeeeeecccc-ccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEE
Confidence 000 01111000 000 1122 557889999999 888888764 88888888
Q ss_pred CCC-CCCCCCCCccceEEeecCCCCEEEEEEeC---CCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeecc
Q 001123 220 MNA-RLLDSDDGFGEVLSWQAHRGPVLSLCISS---YGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSY 294 (1149)
Q Consensus 220 l~~-g~~~~~~~~~~~~~l~GH~~~VtsVafSp---dG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~ 294 (1149)
+.. |+ .+..+.+|...|+.++|++ ++. |+|||.|+||||||+.+++...++..+..+...
T Consensus 164 ~s~dG~--------~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~------- 228 (356)
T 2w18_A 164 FAEDGG--------GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQAS------- 228 (356)
T ss_dssp ECTTSC--------EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CC-------
T ss_pred ECCCCc--------eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceee-------
Confidence 843 33 3566789999999999999 455 789999999999999998876666432211110
Q ss_pred ccccccccccceeeeecCCeEEEEEcCCCC--EEEEec-CCceEEEEcCCccEEEEEec---CCceeeEEeeccCCCccc
Q 001123 295 IDLRSHLSVNGFSSILTSDIKNLLSDHSRA--KVWSAG-FLSFALWDARTRELLKVFNI---DGQIENRVDMSLLPDFAM 368 (1149)
Q Consensus 295 ~~l~~~~~~~g~~~~~~~dv~~las~~~~~--~v~Sas-d~tIrLWD~~TG~~L~~l~~---~g~~~~~v~~S~~~~~~~ 368 (1149)
+....+.+.+. .+++.+++.. .+++++ |.+|++||..+|+++.++.. +++.
T Consensus 229 --------v~~vafSpdG~-~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~-------------- 285 (356)
T 2w18_A 229 --------VCHKAYSEMGL-LFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQA-------------- 285 (356)
T ss_dssp --------CEEEEEEETTE-EEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCC--------------
T ss_pred --------eEEEEECCCCC-EEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCc--------------
Confidence 00111222221 2222222111 234554 57899999999998876531 1110
Q ss_pred cccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCcEEEEeCCCeEEEEeC-
Q 001123 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP- 447 (1149)
Q Consensus 369 ~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~laSgs~DgtIrlWD~- 447 (1149)
....+..++ +..+++|+.|++|||||+
T Consensus 286 ---------------------------------------------------~~~lsg~~s-g~~lASgS~DgTIkIWDl~ 313 (356)
T 2w18_A 286 ---------------------------------------------------GRFLEGDVK-DHCAAAILTSGTIAIWDLL 313 (356)
T ss_dssp ---------------------------------------------------CCEEEEEEE-TTEEEEEETTSCEEEEETT
T ss_pred ---------------------------------------------------ceeEccccC-CCEEEEEcCCCcEEEEECC
Confidence 000011111 224789999999999999
Q ss_pred CCCeeEeeecCCccEE-EE--EecCCEEEEeecCcEEEEEeC
Q 001123 448 NGNRLQDFQYLPFAVQ-CL--CTFGSQIWVGYMNGIVQVLDL 486 (1149)
Q Consensus 448 tG~~l~tl~gH~~~V~-sl--s~dG~~LaSGs~DGtIrlWD~ 486 (1149)
+|+++++|.+|...+. ++ ++||++|++|+.|++|||||.
T Consensus 314 tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 314 LGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 8999999999987654 34 458999999999999999995
No 127
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.88 E-value=3.8e-20 Score=211.88 Aligned_cols=250 Identities=9% Similarity=0.070 Sum_probs=183.1
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-E-EEEECCCcEEEEeCCCcceeeecCCC
Q 001123 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPE 281 (1149)
Q Consensus 204 ~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L-~SGS~DgTIRVWdl~t~~~~~~l~~~ 281 (1149)
.++++|+.|++|++||+.++. ....+.+|. .+.+++|+|+|+ | ++++.|++|++||+.+++....+..
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~--------~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~- 72 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNK--------VTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA- 72 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTE--------EEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC-
T ss_pred EEEEEcCCCCEEEEEECCCCe--------EEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC-
Confidence 478999999999999998865 356677775 489999999997 5 6888999999999987654332210
Q ss_pred cceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEE-ec-CCceEEEEcCCccEEEEEecCCceeeEEe
Q 001123 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS-AG-FLSFALWDARTRELLKVFNIDGQIENRVD 359 (1149)
Q Consensus 282 ~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~S-as-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~ 359 (1149)
...+..+++++++..++. +. +++|++||+.+++.+..+..+..+ ..+.
T Consensus 73 -----------------------------~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~ 122 (391)
T 1l0q_A 73 -----------------------------GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSP-LGLA 122 (391)
T ss_dssp -----------------------------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE-EEEE
T ss_pred -----------------------------CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCc-ceEE
Confidence 134667888888887754 43 478999999999998887655433 2333
Q ss_pred eccCCCccccccceeeEEecCCCCccceeeeeeccccce-EeecCCcEEEEeecc------cccCCCCceEEEEEcCCCc
Q 001123 360 MSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNA-IMGAADAVRRVAAKG------GFGDDNRRTEALTTSIDGM 432 (1149)
Q Consensus 360 ~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~-i~G~~d~v~rv~~~g------~~~~~~~~V~ava~s~Dg~ 432 (1149)
++ +++..+ +++..++..++++.. .+. ....+..++++|+|.
T Consensus 123 ~s-------------------------------~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~dg~ 170 (391)
T 1l0q_A 123 LS-------------------------------PDGKKLYVTNNGDKTVSVINTVTKAVINTVS-VGRSPKGIAVTPDGT 170 (391)
T ss_dssp EC-------------------------------TTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CCSSEEEEEECTTSS
T ss_pred EC-------------------------------CCCCEEEEEeCCCCEEEEEECCCCcEEEEEe-cCCCcceEEECCCCC
Confidence 33 333333 344444444444311 111 234567889999986
Q ss_pred -E-EEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEee---cCcEEEEEeCC-CceeeeeeccCCCeEE
Q 001123 433 -I-WTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGY---MNGIVQVLDLE-GNLLGGWVAHSSPVIK 503 (1149)
Q Consensus 433 -l-aSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs---~DGtIrlWD~~-G~~l~~l~gH~~~V~s 503 (1149)
+ ++++.|++|++||+ +++++..+.. ...+.++++ +|++|++++ .++.|++||+. ++++..+..|.. +.+
T Consensus 171 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~ 248 (391)
T 1l0q_A 171 KVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAG 248 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS-EEE
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC-ccE
Confidence 5 57788999999999 6777777754 467777765 689999998 68999999976 788888888765 666
Q ss_pred EE--ecCCeE-EeecCCCceeeeeccC
Q 001123 504 MA--VGAGYI-FTLANHGGIRGWNVTS 527 (1149)
Q Consensus 504 La--~Dg~~L-aSgS~DgtIRlWdl~s 527 (1149)
++ +|+++| ++++.|++|++||+.+
T Consensus 249 ~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 249 IAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred EEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 66 588877 6889999999999875
No 128
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.88 E-value=4.4e-21 Score=219.85 Aligned_cols=227 Identities=11% Similarity=0.079 Sum_probs=150.2
Q ss_pred eEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecC
Q 001123 234 VLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTS 312 (1149)
Q Consensus 234 ~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~ 312 (1149)
+.++.+|.++|++|+|+|||+ |++|+.| .++||++++++....... .
T Consensus 12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~-------------------------------~ 59 (355)
T 3vu4_A 12 IVPENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEM-------------------------------R 59 (355)
T ss_dssp -------CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEEC-------------------------------S
T ss_pred ccccccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeeec-------------------------------C
Confidence 556789999999999999998 5666655 589999876543321100 0
Q ss_pred CeEEEEEcCCCCEEE--EecCCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeee
Q 001123 313 DIKNLLSDHSRAKVW--SAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFG 390 (1149)
Q Consensus 313 dv~~las~~~~~~v~--Sasd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~ 390 (1149)
.+..+....+...++ ++++++|++||+.+|+++..+..+.. +..+.+++...
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~-v~~v~~~~~~~------------------------- 113 (355)
T 3vu4_A 60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAP-VKDLFLSREFI------------------------- 113 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSC-EEEEEECSSEE-------------------------
T ss_pred CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCc-eEEEEEcCCEE-------------------------
Confidence 122233334444432 33457999999999999998875443 33344332211
Q ss_pred eeccccceEeecCCcEEEEeecccc---cCC-CCceEEEEEcCCCcEEE--EeCCCeEEEEeC-CCC-------------
Q 001123 391 FFQRSRNAIMGAADAVRRVAAKGGF---GDD-NRRTEALTTSIDGMIWT--GGANGLLLQWDP-NGN------------- 450 (1149)
Q Consensus 391 f~~~~~~~i~G~~d~v~rv~~~g~~---~~~-~~~V~ava~s~Dg~laS--gs~DgtIrlWD~-tG~------------- 450 (1149)
+.. .++..++|+.... ... ......+++++ ..++. |+.||+|++||+ +++
T Consensus 114 --------~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~ 183 (355)
T 3vu4_A 114 --------VVS-YGDVISVFKFGNPWKRITDDIRFGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKA 183 (355)
T ss_dssp --------EEE-ETTEEEEEESSTTCCBSSCCEEEEEEEEEET-TEEEEEESSCTTCEEEEECCC---------------
T ss_pred --------EEE-EcCEEEEEECCCCceeeEEeccCCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccc
Confidence 111 1122223321100 000 00223344566 55554 688999999999 554
Q ss_pred ---eeEeeecCCccEEEEEe--cCCEEEEeecCcE-EEEEeCC-Cceeeeee-c-cCCCeEEEE--ecCCeEEeecCCCc
Q 001123 451 ---RLQDFQYLPFAVQCLCT--FGSQIWVGYMNGI-VQVLDLE-GNLLGGWV-A-HSSPVIKMA--VGAGYIFTLANHGG 519 (1149)
Q Consensus 451 ---~l~tl~gH~~~V~sls~--dG~~LaSGs~DGt-IrlWD~~-G~~l~~l~-g-H~~~V~sLa--~Dg~~LaSgS~Dgt 519 (1149)
+++++.+|...|+++++ +|++||+|+.||+ |+|||+. |+++..+. | |.+.|.+++ +||++|+++|.|++
T Consensus 184 ~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~ 263 (355)
T 3vu4_A 184 ILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT 263 (355)
T ss_dssp ---CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE
T ss_pred cCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE
Confidence 37899999999999976 7999999999998 9999986 89999998 6 999999998 58999999999999
Q ss_pred eeeeeccCC
Q 001123 520 IRGWNVTSP 528 (1149)
Q Consensus 520 IRlWdl~sp 528 (1149)
|++||+..+
T Consensus 264 v~iw~~~~~ 272 (355)
T 3vu4_A 264 LHVFEIFND 272 (355)
T ss_dssp EEEEESSCC
T ss_pred EEEEEccCC
Confidence 999999764
No 129
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.87 E-value=1.5e-20 Score=220.59 Aligned_cols=236 Identities=15% Similarity=0.147 Sum_probs=167.6
Q ss_pred eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCC
Q 001123 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLL 225 (1149)
Q Consensus 148 g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~-~LaSGS~DGtIRvWdl~~g~~ 225 (1149)
+.|+.|++||+.+...... ..+ ...+. ..+.+ ...|.+|+|+|++. +|+||+.||+|++|++..+..
T Consensus 148 ~~dg~V~vwd~~~~~~~~~--------~~~--~~~~~-~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 216 (430)
T 2xyi_A 148 TPSSDVLVFDYTKHPSKPE--------PSG--ECQPD-LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPK 216 (430)
T ss_dssp CSSSCEEEEEGGGSCSSCC--------TTC--CCCCS-EEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCB
T ss_pred CCCCcEEEEECCCcccccC--------ccc--cCCCc-EEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCC
Confidence 4588999999975321110 000 00111 11333 78899999999988 999999999999999987431
Q ss_pred CCCCCccceEEeecCCCCEEEEEEeCC-Cc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccc
Q 001123 226 DSDDGFGEVLSWQAHRGPVLSLCISSY-GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSV 303 (1149)
Q Consensus 226 ~~~~~~~~~~~l~GH~~~VtsVafSpd-G~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~ 303 (1149)
..........+.+|.+.|++|+|+|+ +. |++|+.|++|++||+.+..... ... .+.+
T Consensus 217 -~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~-------~~~---------~~~~---- 275 (430)
T 2xyi_A 217 -EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK-------PSH---------TVDA---- 275 (430)
T ss_dssp -GGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS-------CSE---------EEEC----
T ss_pred -CCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc-------cee---------Eeec----
Confidence 00111224567899999999999995 44 7899999999999997642100 000 0111
Q ss_pred cceeeeecCCeEEEEEcCCCC-EEEEec-CCceEEEEcCCc-cEEEEEecCCceeeEEeeccCCCccccccceeeEEecC
Q 001123 304 NGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTR-ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSS 380 (1149)
Q Consensus 304 ~g~~~~~~~dv~~las~~~~~-~v~Sas-d~tIrLWD~~TG-~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~ 380 (1149)
+...+.++++++++. .+++++ +++|++||+++. +++.++
T Consensus 276 ------~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~-------------------------------- 317 (430)
T 2xyi_A 276 ------HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF-------------------------------- 317 (430)
T ss_dssp ------CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE--------------------------------
T ss_pred ------CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe--------------------------------
Confidence 225688889988776 465554 688999999863 222222
Q ss_pred CCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc--EEEEeCCCeEEEEeC-C-C-------
Q 001123 381 KKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDP-N-G------- 449 (1149)
Q Consensus 381 ~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~--laSgs~DgtIrlWD~-t-G------- 449 (1149)
..|...|.++.++|++. +++++.|++|++||+ . +
T Consensus 318 -----------------------------------~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 362 (430)
T 2xyi_A 318 -----------------------------------ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED 362 (430)
T ss_dssp -----------------------------------ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHH
T ss_pred -----------------------------------ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccc
Confidence 23445567788999873 789999999999999 3 2
Q ss_pred ------CeeEeeecCCccEEEEEe--cCC-EEEEeecCcEEEEEeCCC
Q 001123 450 ------NRLQDFQYLPFAVQCLCT--FGS-QIWVGYMNGIVQVLDLEG 488 (1149)
Q Consensus 450 ------~~l~tl~gH~~~V~sls~--dG~-~LaSGs~DGtIrlWD~~G 488 (1149)
+++..+.+|...|+++++ +|+ +|++++.||+|+||++..
T Consensus 363 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 363 AEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp HHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred cccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 678888899999999976 577 999999999999999763
No 130
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.86 E-value=5.8e-21 Score=241.06 Aligned_cols=240 Identities=11% Similarity=0.153 Sum_probs=172.8
Q ss_pred eeEEEEEee--CCeEEEe-CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCC--CCEE
Q 001123 133 CFLRTIVCT--EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEA--SGVV 206 (1149)
Q Consensus 133 ~~l~~l~~~--~~~l~ag-~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~d--g~~L 206 (1149)
..++.++.+ +..+++| .||+|+|||+.++... ....+.| .++|.+++|+++ +.+|
T Consensus 10 ~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~-------------------~~~~l~~h~~~V~~l~~s~~~~~~~l 70 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK-------------------LIDTLTGHEGPVWRVDWAHPKFGTIL 70 (753)
T ss_dssp CCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEE-------------------EEEEECCCSSCEEEEEECCTTSCSEE
T ss_pred ceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCc-------------------cceeccCCcCceEEEEecCCCCCCEE
Confidence 345566654 4556654 6999999998732211 0111233 789999999988 9999
Q ss_pred EEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCC--Cc-EEEEECCCcEEEEeCCCcceeeecCCCcc
Q 001123 207 WSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEAIEKALSLKPEER 283 (1149)
Q Consensus 207 aSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpd--G~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~ 283 (1149)
+||+.||+|++||+.++.. .....+.+|.++|++++|+|+ |. |++|+.||+|++||+.+........
T Consensus 71 ~s~s~Dg~I~vwd~~~~~~------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~---- 140 (753)
T 3jro_A 71 ASCSYDGKVLIWKEENGRW------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII---- 140 (753)
T ss_dssp EEEETTSCEEEEEEETTEE------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE----
T ss_pred EEEeCCCeEEEEECCCCcc------cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE----
Confidence 9999999999999987541 246678899999999999998 76 8999999999999997653211100
Q ss_pred eeeEEEeeeccccccccccccceeeeecCCeEEEEEcC-------------CCCEEEEe-cCCceEEEEcCCccEEEEEe
Q 001123 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-------------SRAKVWSA-GFLSFALWDARTRELLKVFN 349 (1149)
Q Consensus 284 ~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~-------------~~~~v~Sa-sd~tIrLWD~~TG~~L~~l~ 349 (1149)
+.+| ...+.++++++ ++..++++ .|++|++||++++.....+.
T Consensus 141 -------------~~~~----------~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 197 (753)
T 3jro_A 141 -------------IDAH----------AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE 197 (753)
T ss_dssp -------------EECC----------SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred -------------eecC----------CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceee
Confidence 0011 13455666655 35566655 47889999987653211100
Q ss_pred cCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcC
Q 001123 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (1149)
Q Consensus 350 ~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~ 429 (1149)
..+.+|...|.+++++|
T Consensus 198 ---------------------------------------------------------------~~~~~h~~~V~~l~~sp 214 (753)
T 3jro_A 198 ---------------------------------------------------------------STLEGHSDWVRDVAWSP 214 (753)
T ss_dssp ---------------------------------------------------------------EEECCCSSCEEEEEECC
T ss_pred ---------------------------------------------------------------eeecCCCCcEEEEEecc
Confidence 01345666788889999
Q ss_pred C---Cc-EEEEeCCCeEEEEeC-CCC-----eeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC
Q 001123 430 D---GM-IWTGGANGLLLQWDP-NGN-----RLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 430 D---g~-laSgs~DgtIrlWD~-tG~-----~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~ 487 (1149)
+ +. +++|+.||+|++||+ +++ .+....+|...|+++++ +|++|++|+.||.|++||++
T Consensus 215 ~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 215 TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp CCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred CCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 8 66 789999999999999 543 34445568889998865 79999999999999999976
No 131
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.84 E-value=1.2e-19 Score=210.70 Aligned_cols=229 Identities=14% Similarity=0.116 Sum_probs=172.5
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceE-----EeecCCCCEEEEEEeCCCc-EEEEECCCcEE
Q 001123 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVL-----SWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (1149)
Q Consensus 192 ~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~-----~l~GH~~~VtsVafSpdG~-L~SGS~DgTIR 265 (1149)
..+.+++|+|++.++++++.|++|++||+.++.+ .. .+.+|.+.|++++|+++|+ +++++.|++|+
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~ 194 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQT--------VRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVH 194 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCE--------EEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEE
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeE--------eeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEE
Confidence 4566899999888999999999999999998652 22 3568999999999999998 68999999999
Q ss_pred EEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEE-Ee-cCCceEEEEcCCcc
Q 001123 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SA-GFLSFALWDARTRE 343 (1149)
Q Consensus 266 VWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~-Sa-sd~tIrLWD~~TG~ 343 (1149)
+||+++++....+.. + ...+.++++++++..++ ++ .+++|++||+++++
T Consensus 195 ~~d~~~~~~~~~~~~-------------------~----------~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~ 245 (433)
T 3bws_A 195 VFDLKTLAYKATVDL-------------------T----------GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL 245 (433)
T ss_dssp EEETTTCCEEEEEEC-------------------S----------SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred EEECCCceEEEEEcC-------------------C----------CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc
Confidence 999987654332211 1 13466778888888774 44 36789999999887
Q ss_pred EEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceE
Q 001123 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (1149)
Q Consensus 344 ~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ 423 (1149)
++..+..++ .+.
T Consensus 246 ~~~~~~~~~--------------------------------------------------------------------~~~ 257 (433)
T 3bws_A 246 EIRKTDKIG--------------------------------------------------------------------LPR 257 (433)
T ss_dssp EEEECCCCS--------------------------------------------------------------------EEE
T ss_pred EEEEecCCC--------------------------------------------------------------------Cce
Confidence 665443211 134
Q ss_pred EEEEcCCCc-EEEEe--------CCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEE-EEeecCcEEEEEeCC-Cc
Q 001123 424 ALTTSIDGM-IWTGG--------ANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQI-WVGYMNGIVQVLDLE-GN 489 (1149)
Q Consensus 424 ava~s~Dg~-laSgs--------~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~L-aSGs~DGtIrlWD~~-G~ 489 (1149)
+++++|+|. +++++ .|++|++||+ +++.+..+ .|...+.++++ +|++| ++++.|+.|++||++ ++
T Consensus 258 ~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~ 336 (433)
T 3bws_A 258 GLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK 336 (433)
T ss_dssp EEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE
T ss_pred EEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc
Confidence 566788875 66666 5899999999 67766665 45567777765 67655 666899999999987 66
Q ss_pred eeeeeeccCCCeEEEE--ecCCeEEeecC---------------CCceeeeeccC
Q 001123 490 LLGGWVAHSSPVIKMA--VGAGYIFTLAN---------------HGGIRGWNVTS 527 (1149)
Q Consensus 490 ~l~~l~gH~~~V~sLa--~Dg~~LaSgS~---------------DgtIRlWdl~s 527 (1149)
++..+. |...+.+++ +||+++++++. ||.|++||+.+
T Consensus 337 ~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 337 VQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp EEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred EEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence 766665 778888887 57888887765 57999999764
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.83 E-value=1.8e-18 Score=210.56 Aligned_cols=305 Identities=10% Similarity=0.009 Sum_probs=199.8
Q ss_pred CCeEEE--eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001123 142 EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (1149)
Q Consensus 142 ~~~l~a--g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWd 219 (1149)
.+++++ +.|++|+|||.+++....+ +.....+.+++|+|||++|++++.|++|++||
T Consensus 148 ~~~~~vs~~~d~~V~v~D~~t~~~~~~---------------------i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D 206 (543)
T 1nir_A 148 PNLFSVTLRDAGQIALVDGDSKKIVKV---------------------IDTGYAVHISRMSASGRYLLVIGRDARIDMID 206 (543)
T ss_dssp GGEEEEEEGGGTEEEEEETTTCCEEEE---------------------EECSTTEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred CCEEEEEEcCCCeEEEEECCCceEEEE---------------------EecCcccceEEECCCCCEEEEECCCCeEEEEE
Confidence 345554 3488999999988776543 22112378999999999999999999999999
Q ss_pred C--CCCCCCCCCCccceEEeecCCCCEEEEEEeC----CCc-EEEEE-CCCcEEEEeCCCcceeeecCCCcceeeEEEee
Q 001123 220 M--NARLLDSDDGFGEVLSWQAHRGPVLSLCISS----YGD-LWSGS-EGGGIKIWPWEAIEKALSLKPEERHTAALIVE 291 (1149)
Q Consensus 220 l--~~g~~~~~~~~~~~~~l~GH~~~VtsVafSp----dG~-L~SGS-~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~ 291 (1149)
+ .++. .+.++.. ...+.+|+||| ||+ |++++ .|++|+|||..+++....+.....
T Consensus 207 ~~~~t~~--------~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~-------- 269 (543)
T 1nir_A 207 LWAKEPT--------KVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM-------- 269 (543)
T ss_dssp TTSSSCE--------EEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE--------
T ss_pred CcCCCCc--------EEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCc--------
Confidence 9 5543 3556664 44579999999 998 77776 589999999988765443321100
Q ss_pred eccccccccccccceeeeecCCeEEEEEcCCCCEE-EEec-CCceEEEEcCCccEEE--EEecCCceeeEEeeccCCCcc
Q 001123 292 RSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKV-WSAG-FLSFALWDARTRELLK--VFNIDGQIENRVDMSLLPDFA 367 (1149)
Q Consensus 292 ~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v-~Sas-d~tIrLWD~~TG~~L~--~l~~~g~~~~~v~~S~~~~~~ 367 (1149)
...+....+...+..+++++++..+ ++.. +++|.+||..+++.+. .+. .+....
T Consensus 270 ----------~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~----------- 327 (543)
T 1nir_A 270 ----------TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLH----------- 327 (543)
T ss_dssp ----------CSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCC-----------
T ss_pred ----------ccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCcc-----------
Confidence 0000001122346667777765544 4443 5789999999876554 222 222212
Q ss_pred ccccceeeEEecCCCCccceeeeeeccccceEee-cCCcEEEEeec--c----cc----cCCCCceEEEEEcCC-CcE-E
Q 001123 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMG-AADAVRRVAAK--G----GF----GDDNRRTEALTTSID-GMI-W 434 (1149)
Q Consensus 368 ~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G-~~d~v~rv~~~--g----~~----~~~~~~V~ava~s~D-g~l-a 434 (1149)
.+.|.++++.++++ ..+....+++. + .+ ..|..+...+ ++|+ |.+ +
T Consensus 328 --------------------~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~ 386 (543)
T 1nir_A 328 --------------------DGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWS 386 (543)
T ss_dssp --------------------CEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEE
T ss_pred --------------------CceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEE
Confidence 23444555443322 22333333321 1 11 1243333344 4555 665 4
Q ss_pred EEe-CCCeEEEEeC-C-------CCeeEeeecCCccEEEEE--ecCCEEEEee-------cCcEEEEEeCC-Ccee-eee
Q 001123 435 TGG-ANGLLLQWDP-N-------GNRLQDFQYLPFAVQCLC--TFGSQIWVGY-------MNGIVQVLDLE-GNLL-GGW 494 (1149)
Q Consensus 435 Sgs-~DgtIrlWD~-t-------G~~l~tl~gH~~~V~sls--~dG~~LaSGs-------~DGtIrlWD~~-G~~l-~~l 494 (1149)
+++ .|++|.+||. + +++++++.+|...+..+. ++|++|++++ .+++|+|||++ ++.. ..+
T Consensus 387 s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~ 466 (543)
T 1nir_A 387 TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVL 466 (543)
T ss_dssp EEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEE
T ss_pred eccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEe
Confidence 554 5899999999 6 799999999988777664 5899999998 37899999976 5554 333
Q ss_pred --------eccCCCeEEEE--ecCCeEEee-----cCCCceeeeeccC
Q 001123 495 --------VAHSSPVIKMA--VGAGYIFTL-----ANHGGIRGWNVTS 527 (1149)
Q Consensus 495 --------~gH~~~V~sLa--~Dg~~LaSg-----S~DgtIRlWdl~s 527 (1149)
..|...|..++ +||++|+.+ +.|++|.|||..+
T Consensus 467 ~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t 514 (543)
T 1nir_A 467 PIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT 514 (543)
T ss_dssp CHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred echhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCC
Confidence 46678899888 599998854 3589999999765
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.83 E-value=7.1e-19 Score=214.17 Aligned_cols=273 Identities=8% Similarity=-0.020 Sum_probs=187.6
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEee-cCCCCEEEEEEeCCCc-EEEEECCCcEEEEeC--CCcc
Q 001123 198 VGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW--EAIE 273 (1149)
Q Consensus 198 afs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~-GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl--~t~~ 273 (1149)
+++|++.++++++.|++|++||..++. .+.++. ||. +.+++|||||+ |++++.|++|++||+ .+++
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~--------~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~ 213 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKK--------IVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT 213 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCC--------EEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCce--------EEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCc
Confidence 478999999999999999999998875 366677 554 99999999998 889999999999999 6654
Q ss_pred eeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcC----CCCEEEEec--CCceEEEEcCCccEEEE
Q 001123 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH----SRAKVWSAG--FLSFALWDARTRELLKV 347 (1149)
Q Consensus 274 ~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~----~~~~v~Sas--d~tIrLWD~~TG~~L~~ 347 (1149)
....+. .......+++++ ++.++++++ +++|.+||..+++++++
T Consensus 214 ~~~~i~------------------------------~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~ 263 (543)
T 1nir_A 214 KVAEIK------------------------------IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQI 263 (543)
T ss_dssp EEEEEE------------------------------CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEE
T ss_pred EEEEEe------------------------------cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccccee
Confidence 322211 012346678888 888888775 68999999999999998
Q ss_pred EecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccc-eEeecCCcEEEEeeccc-------ccCCC
Q 001123 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRN-AIMGAADAVRRVAAKGG-------FGDDN 419 (1149)
Q Consensus 348 l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~-~i~G~~d~v~rv~~~g~-------~~~~~ 419 (1149)
+...+.......+.+ +..+..+.+++++.. +++...++...+++... ...+.
T Consensus 264 i~~~g~~~~~~~~~~--------------------~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~ 323 (543)
T 1nir_A 264 VSTRGMTVDTQTYHP--------------------EPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAA 323 (543)
T ss_dssp EECCEECSSSCCEES--------------------CCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECC
T ss_pred ecccCcccCcccccc--------------------CCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccC
Confidence 865331100000000 001112233332221 22233333333322110 11233
Q ss_pred CceEEEEEcCCCc-EEE-EeCCCeEEEEeC-CCCeeEeeec----CCccEEEE-Eec-CCEEEEee-cCcEEEEEeCC--
Q 001123 420 RRTEALTTSIDGM-IWT-GGANGLLLQWDP-NGNRLQDFQY----LPFAVQCL-CTF-GSQIWVGY-MNGIVQVLDLE-- 487 (1149)
Q Consensus 420 ~~V~ava~s~Dg~-laS-gs~DgtIrlWD~-tG~~l~tl~g----H~~~V~sl-s~d-G~~LaSGs-~DGtIrlWD~~-- 487 (1149)
..+..++++|||+ +++ +..+++|.+||. +|+++.++.. |......+ .++ |..++++. .|++|.|||++
T Consensus 324 ~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~ 403 (543)
T 1nir_A 324 PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPK 403 (543)
T ss_dssp SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCC
Confidence 4456788999997 554 456899999999 8999988875 66544444 455 56666665 58999999964
Q ss_pred ------CceeeeeeccCCCeEEEE--ecCCeEEeec-------CCCceeeeeccCCCC
Q 001123 488 ------GNLLGGWVAHSSPVIKMA--VGAGYIFTLA-------NHGGIRGWNVTSPGP 530 (1149)
Q Consensus 488 ------G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS-------~DgtIRlWdl~sp~p 530 (1149)
+++++++.+|.+.+..|+ +||++|++++ .+++|++||+.+...
T Consensus 404 ~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~ 461 (543)
T 1nir_A 404 NHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA 461 (543)
T ss_dssp TCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred CCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCC
Confidence 578999999998888777 7999999987 378999999987543
No 134
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.82 E-value=6.6e-18 Score=198.18 Aligned_cols=229 Identities=11% Similarity=-0.001 Sum_probs=168.2
Q ss_pred CCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCC---eEEEEECCCCCCCC
Q 001123 151 NGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG---RIMCWKMNARLLDS 227 (1149)
Q Consensus 151 ~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DG---tIRvWdl~~g~~~~ 227 (1149)
++|++||++. ..... +. .+ ...|.+++|+|||+.|++++.|+ +|++||+.++.
T Consensus 159 ~~i~i~d~~g-~~~~~-----------------l~--~~-~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~--- 214 (415)
T 2hqs_A 159 YELRVSDYDG-YNQFV-----------------VH--RS-PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--- 214 (415)
T ss_dssp EEEEEEETTS-CSCEE-----------------EE--EE-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC---
T ss_pred ceEEEEcCCC-CCCEE-----------------Ee--CC-CCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc---
Confidence 6899999873 22222 11 23 67899999999999999999986 99999999865
Q ss_pred CCCccceEEeecCCCCEEEEEEeCCCc-EE-EEECCCc--EEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccc
Q 001123 228 DDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGGG--IKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSV 303 (1149)
Q Consensus 228 ~~~~~~~~~l~GH~~~VtsVafSpdG~-L~-SGS~DgT--IRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~ 303 (1149)
...+.+|.+.|.+++|+|||+ |+ +++.|+. |++||+.+++. ..+.. +
T Consensus 215 ------~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~-------------------~--- 265 (415)
T 2hqs_A 215 ------VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTD-------------------G--- 265 (415)
T ss_dssp ------EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCC-------------------C---
T ss_pred ------EEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcC-------------------C---
Confidence 456788999999999999998 65 7877765 99999977543 22211 1
Q ss_pred cceeeeecCCeEEEEEcCCCCEEEEecC--C--ceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEec
Q 001123 304 NGFSSILTSDIKNLLSDHSRAKVWSAGF--L--SFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTS 379 (1149)
Q Consensus 304 ~g~~~~~~~dv~~las~~~~~~v~Sasd--~--tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~ 379 (1149)
...+..+++++++..++.+++ + .|.+||+.++++.. +
T Consensus 266 -------~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~-l------------------------------- 306 (415)
T 2hqs_A 266 -------RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-I------------------------------- 306 (415)
T ss_dssp -------SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-C-------------------------------
T ss_pred -------CCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE-E-------------------------------
Confidence 134556778888887766553 3 47777887664211 1
Q ss_pred CCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEeCC---CeEEEEeC-CCCeeEe
Q 001123 380 SKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGAN---GLLLQWDP-NGNRLQD 454 (1149)
Q Consensus 380 ~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs~D---gtIrlWD~-tG~~l~t 454 (1149)
..+...+.+++++|||. |++++.+ .+|++||+ +|++ ..
T Consensus 307 ------------------------------------~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~ 349 (415)
T 2hqs_A 307 ------------------------------------TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QV 349 (415)
T ss_dssp ------------------------------------CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EE
T ss_pred ------------------------------------ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EE
Confidence 01112344567899987 6666653 58999999 5665 55
Q ss_pred eecCCccEEEEEe--cCCEEEEeecCc---EEEEEeCCCceeeeeeccCCCeEEEEecCC
Q 001123 455 FQYLPFAVQCLCT--FGSQIWVGYMNG---IVQVLDLEGNLLGGWVAHSSPVIKMAVGAG 509 (1149)
Q Consensus 455 l~gH~~~V~sls~--dG~~LaSGs~DG---tIrlWD~~G~~l~~l~gH~~~V~sLa~Dg~ 509 (1149)
+..|. .+.++++ +|++|++++.++ .|++||++|+.+..+.+|.+.|.++++.+.
T Consensus 350 l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 350 LSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp CCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCC
T ss_pred ecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCCccccc
Confidence 66664 6776654 799999999887 899999999999999999999999997553
No 135
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.81 E-value=3.7e-18 Score=200.36 Aligned_cols=216 Identities=10% Similarity=-0.043 Sum_probs=157.0
Q ss_pred CCEEEEEeCC------CeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCC---cEEEEeCCCc
Q 001123 203 SGVVWSGHRD------GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGG---GIKIWPWEAI 272 (1149)
Q Consensus 203 g~~LaSGS~D------GtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~Dg---TIRVWdl~t~ 272 (1149)
+..|+.++.+ ++|++||++++. ...+.+|.+.|.+++|||||+ |++++.|+ +|++||+.++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~---------~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg 213 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYN---------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG 213 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCS---------CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCC---------CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC
Confidence 5667776665 799999998633 567889999999999999998 88999885 9999999876
Q ss_pred ceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEE-Eec-C--CceEEEEcCCccEEEEE
Q 001123 273 EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAG-F--LSFALWDARTRELLKVF 348 (1149)
Q Consensus 273 ~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~-Sas-d--~tIrLWD~~TG~~L~~l 348 (1149)
+... +.. + ...+.++++++++.+|+ +++ + ..|.+||+.++++. .+
T Consensus 214 ~~~~-l~~-------------------~----------~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l 262 (415)
T 2hqs_A 214 AVRQ-VAS-------------------F----------PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QV 262 (415)
T ss_dssp CEEE-EEC-------------------C----------SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EC
T ss_pred cEEE-eec-------------------C----------CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eC
Confidence 5321 111 1 13456778888888666 544 2 34999999887642 11
Q ss_pred ecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEc
Q 001123 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (1149)
Q Consensus 349 ~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s 428 (1149)
..+...+.+++++
T Consensus 263 -------------------------------------------------------------------~~~~~~~~~~~~s 275 (415)
T 2hqs_A 263 -------------------------------------------------------------------TDGRSNNTEPTWF 275 (415)
T ss_dssp -------------------------------------------------------------------CCCSSCEEEEEEC
T ss_pred -------------------------------------------------------------------cCCCCcccceEEC
Confidence 1122234567789
Q ss_pred CCCc-EEEEeC-CC--eEEEEeCCCCeeEeeecCCccEEEEE--ecCCEEEEeecC---cEEEEEeCCCceeeeeeccCC
Q 001123 429 IDGM-IWTGGA-NG--LLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMN---GIVQVLDLEGNLLGGWVAHSS 499 (1149)
Q Consensus 429 ~Dg~-laSgs~-Dg--tIrlWD~tG~~l~tl~gH~~~V~sls--~dG~~LaSGs~D---GtIrlWD~~G~~l~~l~gH~~ 499 (1149)
|||+ |++++. ++ .|.+||+.+..+..+..|...+.+++ ++|++|++++.+ ..|++||+++..+..+..|.
T Consensus 276 pdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~- 354 (415)
T 2hqs_A 276 PDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF- 354 (415)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-
T ss_pred CCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-
Confidence 9987 777665 45 67788985434556667777787775 479999998875 69999998744445677775
Q ss_pred CeEEEE--ecCCeEEeecCCC---ceeeeecc
Q 001123 500 PVIKMA--VGAGYIFTLANHG---GIRGWNVT 526 (1149)
Q Consensus 500 ~V~sLa--~Dg~~LaSgS~Dg---tIRlWdl~ 526 (1149)
.+.+++ +||++|++++.|+ .|++||+.
T Consensus 355 ~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 355 LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence 788777 6999999998887 79999975
No 136
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=99.81 E-value=6.7e-20 Score=183.67 Aligned_cols=128 Identities=16% Similarity=0.279 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHhhcchhhhhhhhhccCCCceEeecCcEEecc-----ceeEEEEEEecCCeeeEEEEEeecCCccccCCC
Q 001123 939 ESVRRQEFGDIMTSNEKVKIILEDLCRIPETIVSTNNIIIQN-----QDTSILRVTNKCGKKDAFYQINCEGQSTVKDDG 1013 (1149)
Q Consensus 939 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~-----~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~ 1013 (1149)
+++++++++|+++++||+ ||+.+|.+.++.+.|+|++ ..++.|+|+|+|++ +|.|+|+.+ .++
T Consensus 2 ~~~~~~~~~ev~r~ld~~-----ENe~~P~i~v~~~~ldFG~v~~~~~~~~~l~I~Ntg~v-pa~F~f~~~------~~~ 69 (140)
T 3qbt_B 2 ERRYRKVFEDSVRIMDRM-----ENDFLPSLELSRREFVFENVKFRQLQKEKFQISNNGQV-PCHFSFIPK------LND 69 (140)
T ss_dssp ---------CCCCHHHHH-----HHHTSCCEEESCCEEEEEEECBTCCEEEEEEEEECSSS-CEEEEEECC------TTC
T ss_pred chHHHHHHHHHHHHHHHH-----hhccCCceEeeeeeEEeeeceeeeeeeeEEEEEcCCcc-ceEEEEecC------CCc
Confidence 568999999999999999 7788899999999888885 46889999999998 999999952 111
Q ss_pred CCCCCCCCCCCCCCCCeEEecCceeeCCCCeeEEEEEE-eeccchhhhhcCCCCCCcccCcCcceeEEEEEEEecccccc
Q 001123 1014 QASDRHPRGSFGFPRWLEVTPATGMIKPDRTAEMSVHH-EDFQTLEEFVDGVPQNWWCEDTRDQEVVLVLKVRGRYSTET 1092 (1149)
Q Consensus 1014 ~~~~~~~~~~~~~~~Wl~v~p~~g~i~p~~~~~i~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~e~~Lvl~v~~~~~~~~ 1092 (1149)
+..||+||+|+|..|+|.||++++|+|++ .+..+++.+|+| ...++++|||||+||
T Consensus 70 ---------~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v~~~~~~~ln~g---------~~~l~diLvL~Ve~G----- 126 (140)
T 3qbt_B 70 ---------SQYCKPWLRAEPFEGYLEPNETVDISLDVYVSKDSVTILNSG---------EDKIEDILVLHLDRG----- 126 (140)
T ss_dssp ---------SSSSCTTEEEESCEEEECTTCEEEEEEEECBCHHHHHHHHHS---------SSCSCEEEEEEETTS-----
T ss_pred ---------hhhhhHhhhcCCcccccCCCCeeEEEEEEEEccCcccccccc---------hhhhheeEEEEeecC-----
Confidence 23589999999999999999999999995 344678899998 788899999999999
Q ss_pred eeeEEEeee
Q 001123 1093 RNHRIRVRH 1101 (1149)
Q Consensus 1093 ~~h~i~v~~ 1101 (1149)
+||||+|+.
T Consensus 127 ~d~fI~v~g 135 (140)
T 3qbt_B 127 KDYFLTISG 135 (140)
T ss_dssp CEEEEEEEE
T ss_pred CcEEEEEec
Confidence 999999984
No 137
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=99.81 E-value=6.6e-20 Score=212.06 Aligned_cols=156 Identities=17% Similarity=0.289 Sum_probs=107.8
Q ss_pred cccCHHHHHHHHHHHhhcchhhhhhhhhccCCCceEeecCcEEecc-----ceeEEEEEEecCCeeeEEEEEeecCCccc
Q 001123 935 ARVDESVRRQEFGDIMTSNEKVKIILEDLCRIPETIVSTNNIIIQN-----QDTSILRVTNKCGKKDAFYQINCEGQSTV 1009 (1149)
Q Consensus 935 ~~vd~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~-----~~~~~l~i~N~~~~~~~~f~~~~~~~~~~ 1009 (1149)
++||+++++++++|+++++||+ ||+.+|.+.|+.+.|+|++ ..++.|+|+|+|++ +|.|+|+.+
T Consensus 1 ~~i~~~~~~~~~~ev~~~~d~~-----en~~~P~v~v~~~~idFg~v~~~~~~~~~l~i~N~g~~-pa~f~f~~~----- 69 (366)
T 3qis_A 1 KVVDERRYRKVFEDSVRIMDRM-----ENDFLPSLELSRREFVFENVKFRQLQKEKFQISNNGQV-PCHFSFIPK----- 69 (366)
T ss_dssp --------------------------------CCEEESCSEEEEEEECBTCCEEEEEEEEECSSS-CEEEEEECC-----
T ss_pred CccCHHHHHHHHHHHHHHHhHH-----HhccCCeEEEecCeEEeeeeeeCCeEEEEEEEEecCCc-eEEEEEEeC-----
Confidence 4789999999999999999999 7788999999998888875 56899999999998 999999953
Q ss_pred cCCCCCCCCCCCCCCCCCCCeEEecCceeeCCCCeeEEEEEE-eeccchhhhhcCCCCCCcccCcCcceeEEEEEEEecc
Q 001123 1010 KDDGQASDRHPRGSFGFPRWLEVTPATGMIKPDRTAEMSVHH-EDFQTLEEFVDGVPQNWWCEDTRDQEVVLVLKVRGRY 1088 (1149)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~Wl~v~p~~g~i~p~~~~~i~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~e~~Lvl~v~~~~ 1088 (1149)
.+ ++..||+||+|+|..|+|.||++++|+|++ .+..+++.+|+| ...+++||||+|++|
T Consensus 70 -~~---------~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v~~~~~~~ln~g---------~~~l~diLvL~ve~G- 129 (366)
T 3qis_A 70 -LN---------DSQYCKPWLRAEPFEGYLEPNETVDISLDVYVSKDSVTILNSG---------EDKIEDILVLHLDRG- 129 (366)
T ss_dssp -TT---------CSSSSCTTEEEESCEEEECTTCEEEEEEEECBCTTTHHHHHHT---------SSCSCEEEEEEETTS-
T ss_pred -CC---------CCCCCCCcEEEeCCccEECCCCEEEEEEEEEECHHHHHHHhcC---------ccccceEEEEEEeCC-
Confidence 11 123589999999999999999999999995 455789999999 678999999999999
Q ss_pred cccceeeEEEee-----eccCCCcccccCCCCCcCccCCCcc
Q 001123 1089 STETRNHRIRVR-----HCFSAKTKREDHKPNESAQIPGNVL 1125 (1149)
Q Consensus 1089 ~~~~~~h~i~v~-----~c~~~~~~~~~~~~~~~~~~~~~~~ 1125 (1149)
++|||+|+ +|||.+...+...+.+.+..+.+.+
T Consensus 130 ----~d~FI~v~~~~~~s~FG~sl~~l~~~~~pir~~~~~~l 167 (366)
T 3qis_A 130 ----KDYFLTISGNYLPSCFGTSLEALCRMKRPIREVPVTKL 167 (366)
T ss_dssp ----CEEEEEEEEEECCCSTTSCHHHHHHCCSCTTC------
T ss_pred ----CcEEEEeccccCCccccCcHHHHHHhccchhhcChhhh
Confidence 99999998 6999999988888887777655544
No 138
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.79 E-value=2.9e-17 Score=214.43 Aligned_cols=360 Identities=8% Similarity=-0.072 Sum_probs=225.8
Q ss_pred eEEEEEeeCCeEEEeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCC-
Q 001123 134 FLRTIVCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD- 212 (1149)
Q Consensus 134 ~l~~l~~~~~~l~ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~D- 212 (1149)
.++..+...+++....++.|++|+++++.... +. .| ...|.+++|||||++||+++.+
T Consensus 16 ~~~~~~~S~~~iaf~~~~~l~~~~~~gg~~~~------------------lt--~~-~~~v~~~~~SPDG~~la~~s~~~ 74 (1045)
T 1k32_A 16 LLLNPDIHGDRIIFVCCDDLWEHDLKSGSTRK------------------IV--SN-LGVINNARFFPDGRKIAIRVMRG 74 (1045)
T ss_dssp CCEEEEEETTEEEEEETTEEEEEETTTCCEEE------------------EE--CS-SSEEEEEEECTTSSEEEEEEEES
T ss_pred eEeCcEEeCCEEEEEECCcEEEEECCCCcEEE------------------ee--eC-CCcccCeEECCCCCEEEEEEeec
Confidence 44455555566655556789999997654321 11 23 6789999999999999988754
Q ss_pred -----CeEEEEECCCCCCCCCCCccceEEeecCCCCE-------EEEEEeCCCc-EEEEECC------CcEEEEeCCCcc
Q 001123 213 -----GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPV-------LSLCISSYGD-LWSGSEG------GGIKIWPWEAIE 273 (1149)
Q Consensus 213 -----GtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~V-------tsVafSpdG~-L~SGS~D------gTIRVWdl~t~~ 273 (1149)
..|++|++.++. ...+.+|.+.+ .+++|||||+ +++++.| ..|.+|++.+++
T Consensus 75 ~~~~~~~i~~~d~~~g~---------~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~ 145 (1045)
T 1k32_A 75 SSLNTADLYFYNGENGE---------IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN 145 (1045)
T ss_dssp TTCCEEEEEEEETTTTE---------EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE
T ss_pred cCCCCCeEEEEECCCCC---------eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCC
Confidence 379999998754 66788999888 9999999998 5677755 357777776654
Q ss_pred eeeecCCCcceeeEEE-----eeec-----ccccccccccccee-----------eeecCCeEEEEEcCCCCEEEEec-C
Q 001123 274 KALSLKPEERHTAALI-----VERS-----YIDLRSHLSVNGFS-----------SILTSDIKNLLSDHSRAKVWSAG-F 331 (1149)
Q Consensus 274 ~~~~l~~~~~~~~a~~-----~~~~-----~~~l~~~~~~~g~~-----------~~~~~dv~~las~~~~~~v~Sas-d 331 (1149)
.. .+........+++ ..+. .+..........++ ..+...+..++++++ ..+++++ +
T Consensus 146 ~~-~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~d 223 (1045)
T 1k32_A 146 FV-PLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDID 223 (1045)
T ss_dssp EE-ECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTT
T ss_pred eE-EecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEecc
Confidence 32 2221111111110 0000 00000000000000 012234555666655 3444443 4
Q ss_pred CceEEEEcCC-ccEEEEEecCCceeeEEeeccCCCcccc-ccceeeEEec--------CC-----------CCccceeee
Q 001123 332 LSFALWDART-RELLKVFNIDGQIENRVDMSLLPDFAME-DEFKTKIVTS--------SK-----------KDKAQSSFG 390 (1149)
Q Consensus 332 ~tIrLWD~~T-G~~L~~l~~~g~~~~~v~~S~~~~~~~~-~~~~~~~~s~--------~~-----------k~~~~~si~ 390 (1149)
++++||++.. +..++.+..+... ....+++++...+. .+..++++.. .. +...+..+.
T Consensus 224 g~~~l~~~~~~g~~~~~l~~~~~~-~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~ 302 (1045)
T 1k32_A 224 GFGQIYSTDLDGKDLRKHTSFTDY-YPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAED 302 (1045)
T ss_dssp SSCEEEEEETTSCSCEECCCCCSS-CEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEE
T ss_pred CceEEEEEeCCCCcceEecCCCCc-ceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCcccccccccccccccceee
Confidence 6789998653 4444555444332 23455655442211 1112222211 00 011356788
Q ss_pred ee-ccccceEeecCCcEEEEeec-c---cccCCCC-ceEEEEEcCCCc-EEEEeCCCeEE-EEeCCCCeeEeeecCCccE
Q 001123 391 FF-QRSRNAIMGAADAVRRVAAK-G---GFGDDNR-RTEALTTSIDGM-IWTGGANGLLL-QWDPNGNRLQDFQYLPFAV 462 (1149)
Q Consensus 391 f~-~~~~~~i~G~~d~v~rv~~~-g---~~~~~~~-~V~ava~s~Dg~-laSgs~DgtIr-lWD~tG~~l~tl~gH~~~V 462 (1149)
|+ |+++.++.+..+.+..+... + .+..+.. .+..++++ ||. +++++.++.+. +||+.+.....+.+|...+
T Consensus 303 ~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~ 381 (1045)
T 1k32_A 303 FSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNV 381 (1045)
T ss_dssp EEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSE
T ss_pred ecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccce
Confidence 99 99988877764444433321 1 2445555 78889999 886 78888888898 9999554455566888888
Q ss_pred EEEEe--cCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEEEE--ecCCeEEeecCCC----------ceeeeeccC
Q 001123 463 QCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHG----------GIRGWNVTS 527 (1149)
Q Consensus 463 ~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~Dg----------tIRlWdl~s 527 (1149)
.++++ ||++||+++.++.|++||++ |++...+.+|.+.|.+++ +||++|++++.++ +|++||+.+
T Consensus 382 ~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~ 461 (1045)
T 1k32_A 382 FAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG 461 (1045)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred eeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence 87755 79999999999999999986 777777779999988887 6999999887654 999999875
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.76 E-value=2.1e-16 Score=176.55 Aligned_cols=264 Identities=8% Similarity=0.015 Sum_probs=173.3
Q ss_pred CCeEEE--eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeC-CCeEEEE
Q 001123 142 EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR-DGRIMCW 218 (1149)
Q Consensus 142 ~~~l~a--g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~-DGtIRvW 218 (1149)
.+.+|+ +.+++|++||++++..... + ..+ ...+ +++|+|+|+.|+.++. ++.|.+|
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~-----------------~--~~~-~~~~-~~~~s~dg~~l~~~~~~~~~i~~~ 67 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQ-----------------I--TLG-YDFV-DTAITSDCSNVVVTSDFCQTLVQI 67 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEE-----------------E--ECC-CCEE-EEEECSSSCEEEEEESTTCEEEEE
T ss_pred CCEEEEEecCCCeEEEEeCcccceeee-----------------E--Ecc-CCcc-eEEEcCCCCEEEEEeCCCCeEEEE
Confidence 456665 3588899999988775432 1 111 3455 9999999996666665 9999999
Q ss_pred ECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCC---cEEEEeCCCcceeeecCCCcceeeEEEeeecc
Q 001123 219 KMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGG---GIKIWPWEAIEKALSLKPEERHTAALIVERSY 294 (1149)
Q Consensus 219 dl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~Dg---TIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~ 294 (1149)
|+.++.. ....+..|..++.+++|+|+|+ |+++..++ +|++||+.+++....+..
T Consensus 68 d~~~~~~-------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-------------- 126 (331)
T 3u4y_A 68 ETQLEPP-------KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-------------- 126 (331)
T ss_dssp ECSSSSC-------EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC--------------
T ss_pred ECCCCce-------eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC--------------
Confidence 9988651 1455677888877799999998 66544442 999999987654322110
Q ss_pred ccccccccccceeeeecCCeEEEEEcCCCCEEEEe--cCCc-eEEEEcCCccEEEEEecCCceeeEEeeccCCCcccccc
Q 001123 295 IDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA--GFLS-FALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDE 371 (1149)
Q Consensus 295 ~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sa--sd~t-IrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~ 371 (1149)
......+++++++..++.+ .++. |.+||+.....+.... ..
T Consensus 127 ----------------~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~--~~------------------ 170 (331)
T 3u4y_A 127 ----------------PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG--QE------------------ 170 (331)
T ss_dssp ----------------CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE--EE------------------
T ss_pred ----------------CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC--Cc------------------
Confidence 1234567788887755543 3467 9999986532211100 00
Q ss_pred ceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EE-EEeCCCeEEEEeC-C
Q 001123 372 FKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IW-TGGANGLLLQWDP-N 448 (1149)
Q Consensus 372 ~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-la-Sgs~DgtIrlWD~-t 448 (1149)
.+ ........++++|||. ++ ++..+++|++||+ +
T Consensus 171 ----~~---------------------------------------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 207 (331)
T 3u4y_A 171 ----FI---------------------------------------SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQN 207 (331)
T ss_dssp ----EE---------------------------------------CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ----cc---------------------------------------cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 00 0112245677999997 55 4446899999999 7
Q ss_pred CCe---eEeeecCCccEEEE--EecCCEEEEee-cCcEEEEEeCC-Cce--eeeeecc----CCCe-----EEEEecCCe
Q 001123 449 GNR---LQDFQYLPFAVQCL--CTFGSQIWVGY-MNGIVQVLDLE-GNL--LGGWVAH----SSPV-----IKMAVGAGY 510 (1149)
Q Consensus 449 G~~---l~tl~gH~~~V~sl--s~dG~~LaSGs-~DGtIrlWD~~-G~~--l~~l~gH----~~~V-----~sLa~Dg~~ 510 (1149)
++. +..+..+ ..+..+ +++|++|++++ .++.|.+||.+ |++ +..+..+ ..++ .++.+||++
T Consensus 208 ~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 286 (331)
T 3u4y_A 208 PENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETK 286 (331)
T ss_dssp TTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSE
T ss_pred CcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCE
Confidence 887 7777654 444444 45799877665 57899999986 655 4443333 2222 244579998
Q ss_pred EEee-cCCCceeeeeccC
Q 001123 511 IFTL-ANHGGIRGWNVTS 527 (1149)
Q Consensus 511 LaSg-S~DgtIRlWdl~s 527 (1149)
|+.+ +.+++|++||+..
T Consensus 287 l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 287 LFISANISRELKVFTISG 304 (331)
T ss_dssp EEEEETTTTEEEEEETTS
T ss_pred EEEecCCCCcEEEEEecC
Confidence 8655 5567999999864
No 140
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.75 E-value=9.5e-17 Score=200.39 Aligned_cols=291 Identities=9% Similarity=-0.037 Sum_probs=184.1
Q ss_pred CCceEEEEEcCCCCEEEEEeC-CC-----eEEEEECCCCCCCCCCCccceEEeecCCC----------------------
Q 001123 191 VSSVMCMVGDEASGVVWSGHR-DG-----RIMCWKMNARLLDSDDGFGEVLSWQAHRG---------------------- 242 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~-DG-----tIRvWdl~~g~~~~~~~~~~~~~l~GH~~---------------------- 242 (1149)
...|.+++|||||++|++++. |+ +|++||+.++.. ...+.+|..
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQT--------RLLVDSKVVLPGTETLSDEEKARRERQRIAA 107 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCE--------EEEECGGGTC--------------------C
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCce--------eEccchhhcccccccccchhhhhhhhhhhcc
Confidence 346899999999999999998 98 999999998752 333444433
Q ss_pred --CEEEEEEeCCCc-EEEEECCCcEEEEeCCCcc--eeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEE
Q 001123 243 --PVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE--KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNL 317 (1149)
Q Consensus 243 --~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~--~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~l 317 (1149)
.|.+++|||||+ |++++. ++|++||+.++. ....+.. + ...+..+
T Consensus 108 ~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~-------------------~----------~~~~~~~ 157 (741)
T 2ecf_A 108 MTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTH-------------------G----------EGFATDA 157 (741)
T ss_dssp CEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCC-------------------S----------SSCEEEE
T ss_pred ccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEccc-------------------C----------Ccccccc
Confidence 389999999998 777775 999999998762 1111111 1 1346677
Q ss_pred EEcCCCCEEEEecCCceEEEEcCCccEEEEEecCCc-e---------------eeEEeeccCCCccccccc---eeeEEe
Q 001123 318 LSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQ-I---------------ENRVDMSLLPDFAMEDEF---KTKIVT 378 (1149)
Q Consensus 318 as~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~~~g~-~---------------~~~v~~S~~~~~~~~~~~---~~~~~s 378 (1149)
++++++.+|+.++++.|.+||+.+|+..+....+.. + ...+.+|+++...+.... ....+.
T Consensus 158 ~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~ 237 (741)
T 2ecf_A 158 KLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQK 237 (741)
T ss_dssp EECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEE
T ss_pred cCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEe
Confidence 889999999888888999999999987765443322 1 123455555443321000 000000
Q ss_pred c---CCCCccceeeeeeccccceEeecCCc--EEEEee--c-cc----c--cCCCCceEEEEEcCCCc-EEEEeC-----
Q 001123 379 S---SKKDKAQSSFGFFQRSRNAIMGAADA--VRRVAA--K-GG----F--GDDNRRTEALTTSIDGM-IWTGGA----- 438 (1149)
Q Consensus 379 ~---~~k~~~~~si~f~~~~~~~i~G~~d~--v~rv~~--~-g~----~--~~~~~~V~ava~s~Dg~-laSgs~----- 438 (1149)
. .........+.+... |.... ...+++ . +. . ..+...+..+++ |||+ |++++.
T Consensus 238 ~~~~~p~~~~~~~~~~~~~------g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~ 310 (741)
T 2ecf_A 238 RYEVYADRTDVIEQRYPAA------GDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQK 310 (741)
T ss_dssp EEEECSSCEEEEEEECCBT------TSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSS
T ss_pred cCCCCCCcccceEeecCCC------CCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCC
Confidence 0 000000000000000 00001 111111 1 11 0 134567788999 9987 665443
Q ss_pred CCeEEEEeC-CCCeeEeeecCCc----cEEE--EEecCCEEEEeecCcEEEEEe--CCCceeeeeeccCCCeEEE---Ee
Q 001123 439 NGLLLQWDP-NGNRLQDFQYLPF----AVQC--LCTFGSQIWVGYMNGIVQVLD--LEGNLLGGWVAHSSPVIKM---AV 506 (1149)
Q Consensus 439 DgtIrlWD~-tG~~l~tl~gH~~----~V~s--ls~dG~~LaSGs~DGtIrlWD--~~G~~l~~l~gH~~~V~sL---a~ 506 (1149)
+..|++||+ +|++...+..|.. .+.+ +++||+++++++.||+++||. .+|+ +..+.+|...|.++ .+
T Consensus 311 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~ 389 (741)
T 2ecf_A 311 KLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE 389 (741)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET
T ss_pred eEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC
Confidence 578999999 7888777776643 2233 456899999999999777776 4577 88899998888765 36
Q ss_pred cCCeEE-eecCCC--ceeeeeccC
Q 001123 507 GAGYIF-TLANHG--GIRGWNVTS 527 (1149)
Q Consensus 507 Dg~~La-SgS~Dg--tIRlWdl~s 527 (1149)
||+.|+ +++.|+ ++++|++..
T Consensus 390 dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 390 KAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp TTTEEEEEECSSCTTCBEEEEEET
T ss_pred CCCEEEEEEeCCCCceEEEEEEEc
Confidence 888765 556666 899999864
No 141
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.74 E-value=2.6e-16 Score=170.14 Aligned_cols=242 Identities=10% Similarity=0.008 Sum_probs=170.3
Q ss_pred eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC-CCCC
Q 001123 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNA-RLLD 226 (1149)
Q Consensus 148 g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~-g~~~ 226 (1149)
+.|++|++||+.++..... . .+ ...|.+++|+|+|++|++++ |+.|++||+.+ +..
T Consensus 19 ~~~~~i~~~d~~~~~~~~~------------------~--~~-~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~- 75 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVV------------------W--QT-PELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP- 75 (297)
T ss_dssp CCCEEEEEEETTTTEEEEE------------------E--EE-SSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC-
T ss_pred CcceeEEEEeCCCCceeee------------------c--cC-CcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc-
Confidence 3578899999987653321 1 23 67899999999999999987 88999999987 652
Q ss_pred CCCCccceEEeecC-CCCEEEEEEeCCCc-EEEEE--CCCcEEEEeCCC--cceeeecCCCcceeeEEEeeecccccccc
Q 001123 227 SDDGFGEVLSWQAH-RGPVLSLCISSYGD-LWSGS--EGGGIKIWPWEA--IEKALSLKPEERHTAALIVERSYIDLRSH 300 (1149)
Q Consensus 227 ~~~~~~~~~~l~GH-~~~VtsVafSpdG~-L~SGS--~DgTIRVWdl~t--~~~~~~l~~~~~~~~a~~~~~~~~~l~~~ 300 (1149)
...+.+| ...|.+++|+|||+ |++++ .|+.++||.++. +. ...+..
T Consensus 76 -------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~-------------------- 127 (297)
T 2ojh_A 76 -------EKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTK-------------------- 127 (297)
T ss_dssp -------EECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCS--------------------
T ss_pred -------eEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeec--------------------
Confidence 3344566 47899999999998 77777 456777777642 21 111100
Q ss_pred ccccceeeeecCCeEEEEEcCCCCEEE-Ee-cCCceEEEEcC--CccEEEEEecCCceeeEEeeccCCCccccccceeeE
Q 001123 301 LSVNGFSSILTSDIKNLLSDHSRAKVW-SA-GFLSFALWDAR--TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKI 376 (1149)
Q Consensus 301 ~~~~g~~~~~~~dv~~las~~~~~~v~-Sa-sd~tIrLWD~~--TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~ 376 (1149)
...+..+++++++..++ ++ .++.++||++. +++.. .
T Consensus 128 ----------~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~-~----------------------------- 167 (297)
T 2ojh_A 128 ----------NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET-R----------------------------- 167 (297)
T ss_dssp ----------SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE-E-----------------------------
T ss_pred ----------CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcce-E-----------------------------
Confidence 01245567777777665 43 35778888853 22110 0
Q ss_pred EecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEe-CCCeEEEEeC--CCCee
Q 001123 377 VTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG-ANGLLLQWDP--NGNRL 452 (1149)
Q Consensus 377 ~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs-~DgtIrlWD~--tG~~l 452 (1149)
+..+...+.++.++|||. ++.++ .|+.+++|++ .+..+
T Consensus 168 --------------------------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~ 209 (297)
T 2ojh_A 168 --------------------------------------LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSV 209 (297)
T ss_dssp --------------------------------------CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCE
T ss_pred --------------------------------------cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCc
Confidence 112223456677899987 55555 5899999998 57778
Q ss_pred EeeecCCccEEEEEe--cCCEEEEeecC-----------cEEEEEeCC-Cce--eeeeeccCCCeEEEE--ecCCeEEee
Q 001123 453 QDFQYLPFAVQCLCT--FGSQIWVGYMN-----------GIVQVLDLE-GNL--LGGWVAHSSPVIKMA--VGAGYIFTL 514 (1149)
Q Consensus 453 ~tl~gH~~~V~sls~--dG~~LaSGs~D-----------GtIrlWD~~-G~~--l~~l~gH~~~V~sLa--~Dg~~LaSg 514 (1149)
..+..|...+.++++ +|++|++++.+ +.|++||++ ++. +..+.+|...|..++ +|+++|+++
T Consensus 210 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 289 (297)
T 2ojh_A 210 ERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYV 289 (297)
T ss_dssp EECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEE
T ss_pred EEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEE
Confidence 888888888887765 79999998876 679999987 443 455668998898876 689999988
Q ss_pred cCCC
Q 001123 515 ANHG 518 (1149)
Q Consensus 515 S~Dg 518 (1149)
+.|.
T Consensus 290 ~~~~ 293 (297)
T 2ojh_A 290 RYFP 293 (297)
T ss_dssp EECC
T ss_pred Eecc
Confidence 7764
No 142
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.73 E-value=7.8e-16 Score=200.98 Aligned_cols=299 Identities=12% Similarity=-0.020 Sum_probs=202.4
Q ss_pred EEEEEcCCCCEEEEEeCC------CeEEEEECCCCCCCCC--CC------------------------------------
Q 001123 195 MCMVGDEASGVVWSGHRD------GRIMCWKMNARLLDSD--DG------------------------------------ 230 (1149)
Q Consensus 195 ~~lafs~dg~~LaSGS~D------GtIRvWdl~~g~~~~~--~~------------------------------------ 230 (1149)
.+++|+|||+++++++.| ..|.+|++.++..... ..
T Consensus 110 ~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~ 189 (1045)
T 1k32_A 110 DVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWI 189 (1045)
T ss_dssp EEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEE
T ss_pred ccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEE
Confidence 899999999999999866 4577788766542100 00
Q ss_pred ---ccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCC-cceeeecCCCcceeeEEEeeeccccccccccccc
Q 001123 231 ---FGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA-IEKALSLKPEERHTAALIVERSYIDLRSHLSVNG 305 (1149)
Q Consensus 231 ---~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t-~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g 305 (1149)
......+.+|.+.|.+++|+++ . +++++.|++++||.+.. +.....+.. +
T Consensus 190 ~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~-------------------~----- 244 (1045)
T 1k32_A 190 EVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTS-------------------F----- 244 (1045)
T ss_dssp EEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCC-------------------C-----
T ss_pred ECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecC-------------------C-----
Confidence 0122345789999999999998 5 46888899999998753 211111111 1
Q ss_pred eeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEecCC-----------ceeeEEeec-cCCCcccc-ccc
Q 001123 306 FSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDG-----------QIENRVDMS-LLPDFAME-DEF 372 (1149)
Q Consensus 306 ~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~~~g-----------~~~~~v~~S-~~~~~~~~-~~~ 372 (1149)
..+...++++++..++.+.++.|.+||+.++++ ..+..+. ..+..+.++ +++...+. ...
T Consensus 245 ------~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~ 317 (1045)
T 1k32_A 245 ------TDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRG 317 (1045)
T ss_dssp ------CSSCEEEEEESSSCEEEEETTEEEEECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETT
T ss_pred ------CCcceeeEcCCCCEEEEEeCCEEEEecCCceEe-eeeccCcccccccccccccccceeeecCCCCCEEEEEEcC
Confidence 112234566777777777788999999955544 3555422 123467777 76554321 111
Q ss_pred eeeEEecC--------CCCc-cceeeeeeccccceEeecCCcEEE-Eeec-----ccccCCCCceEEEEEcCCCc-EEEE
Q 001123 373 KTKIVTSS--------KKDK-AQSSFGFFQRSRNAIMGAADAVRR-VAAK-----GGFGDDNRRTEALTTSIDGM-IWTG 436 (1149)
Q Consensus 373 ~~~~~s~~--------~k~~-~~~si~f~~~~~~~i~G~~d~v~r-v~~~-----g~~~~~~~~V~ava~s~Dg~-laSg 436 (1149)
.+.++... .+.. .+..+.|+ ++..++..+.+.... +++. ..+.++...+..++++|||+ |+++
T Consensus 318 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~ 396 (1045)
T 1k32_A 318 QAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVA 396 (1045)
T ss_dssp EEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEE
T ss_pred EEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEE
Confidence 22222211 1111 33456677 766666555443333 3331 13446667889999999997 7899
Q ss_pred eCCCeEEEEeC-CCCeeEeeecCCccEEEEE--ecCCEEEEeecCc----------EEEEEeCCCceeeeeeccCCCeEE
Q 001123 437 GANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNG----------IVQVLDLEGNLLGGWVAHSSPVIK 503 (1149)
Q Consensus 437 s~DgtIrlWD~-tG~~l~tl~gH~~~V~sls--~dG~~LaSGs~DG----------tIrlWD~~G~~l~~l~gH~~~V~s 503 (1149)
+.+++|++||+ +|++...+.+|...|.+++ +||++|++++.++ +|++||+++..+..+.+|...+.+
T Consensus 397 ~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~ 476 (1045)
T 1k32_A 397 NDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYA 476 (1045)
T ss_dssp ETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEE
T ss_pred CCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCC
Confidence 99999999999 7888877778888887665 5899999887754 999999885457888899998988
Q ss_pred EE--ecCCeEEeecCCCceeeeecc
Q 001123 504 MA--VGAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 504 La--~Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
++ +||++|+.++.++..++|+..
T Consensus 477 ~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 477 PAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp EEECTTSCEEEEEESCCCCCEECSS
T ss_pred ceEcCCCCEEEEEecccCCcCcchh
Confidence 87 599999999999999999864
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.73 E-value=8.8e-16 Score=170.91 Aligned_cols=239 Identities=12% Similarity=0.145 Sum_probs=152.8
Q ss_pred CCceEEEEEcCCCCEEEEEeCC-CeEEEEECC--CCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEE-CCCcEE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRD-GRIMCWKMN--ARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGIK 265 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~D-GtIRvWdl~--~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS-~DgTIR 265 (1149)
...+.+++|+|+|++|++++.+ +.|++|++. ++.. .....+..+. .+.+++|+|+|+ |+.++ .|++|+
T Consensus 37 ~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~------~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~ 109 (343)
T 1ri6_A 37 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL------TFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVS 109 (343)
T ss_dssp SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE------EEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEE
T ss_pred CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce------eeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEE
Confidence 4567889999999999998887 999999997 4331 2234455444 789999999998 65554 589999
Q ss_pred EEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEe--cCCceEEEEcCC-c
Q 001123 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA--GFLSFALWDART-R 342 (1149)
Q Consensus 266 VWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sa--sd~tIrLWD~~T-G 342 (1149)
+||+..+...... .. +. ....+..+++++++..++.+ .++.|++||+.+ +
T Consensus 110 ~~d~~~~~~~~~~-------~~---------~~-----------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 162 (343)
T 1ri6_A 110 VTRLEDGLPVGVV-------DV---------VE-----------GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG 162 (343)
T ss_dssp EEEEETTEEEEEE-------EE---------EC-----------CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred EEECCCCcccccc-------cc---------cc-----------CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCC
Confidence 9998422110000 00 00 01224456677777766655 467899999986 5
Q ss_pred cEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCce
Q 001123 343 ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (1149)
Q Consensus 343 ~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V 422 (1149)
++...... . .. ......+
T Consensus 163 ~~~~~~~~--~-----------------------~~-------------------------------------~~~~~~~ 180 (343)
T 1ri6_A 163 HLVAQDPA--E-----------------------VT-------------------------------------TVEGAGP 180 (343)
T ss_dssp CEEEEEEE--E-----------------------EE-------------------------------------CSTTCCE
T ss_pred ceeeeccc--c-----------------------cc-------------------------------------cCCCCCc
Confidence 43221100 0 00 0001234
Q ss_pred EEEEEcCCCc-EEEE-eCCCeEEEEeCC---CCe--eEeee----cC--CccEEEEEe--cCCEEEE-eecCcEEEEEeC
Q 001123 423 EALTTSIDGM-IWTG-GANGLLLQWDPN---GNR--LQDFQ----YL--PFAVQCLCT--FGSQIWV-GYMNGIVQVLDL 486 (1149)
Q Consensus 423 ~ava~s~Dg~-laSg-s~DgtIrlWD~t---G~~--l~tl~----gH--~~~V~sls~--dG~~LaS-Gs~DGtIrlWD~ 486 (1149)
..++++|+|. ++.+ ..+++|++||++ |+. ++.+. ++ ...+.++++ +|++|++ +..++.|++||+
T Consensus 181 ~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~ 260 (343)
T 1ri6_A 181 RHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSV 260 (343)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEE
Confidence 4577899987 5544 478999999993 432 33332 11 224555554 6888874 447999999997
Q ss_pred C--C---ceeeeeeccCCCeEEEE--ecCCeEEeec-CCCceeeeecc
Q 001123 487 E--G---NLLGGWVAHSSPVIKMA--VGAGYIFTLA-NHGGIRGWNVT 526 (1149)
Q Consensus 487 ~--G---~~l~~l~gH~~~V~sLa--~Dg~~LaSgS-~DgtIRlWdl~ 526 (1149)
+ + +.+..+..+.. +.+++ +||++|+.++ .|++|++|++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 261 SEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp CTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred cCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 5 2 34555555554 66666 5889888776 68999999764
No 144
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.72 E-value=1.2e-16 Score=198.86 Aligned_cols=315 Identities=8% Similarity=-0.045 Sum_probs=180.6
Q ss_pred EeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-C---CceEEEEEcCCCCEEEEEeCC---------C
Q 001123 147 AGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-V---SSVMCMVGDEASGVVWSGHRD---------G 213 (1149)
Q Consensus 147 ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~---~~V~~lafs~dg~~LaSGS~D---------G 213 (1149)
++.|++|++||++++..... +.+ . ..|.+++|||||++|++++.| +
T Consensus 33 ~~~dg~i~~~d~~~g~~~~~---------------------~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~ 91 (723)
T 1xfd_A 33 REQKGTVRLWNVETNTSTVL---------------------IEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTG 91 (723)
T ss_dssp CCSSSCEEEBCGGGCCCEEE---------------------ECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCS
T ss_pred EeCCCCEEEEECCCCcEEEE---------------------eccccccccccceEEECCCCCEEEEEecCccceeeccee
Confidence 35789999999998765432 111 1 248899999999999999875 7
Q ss_pred eEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeee
Q 001123 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVER 292 (1149)
Q Consensus 214 tIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~ 292 (1149)
.|.+||+.++.+ ..+....+|...|.+++|||||+ |++++. ++|++||+.+++.............
T Consensus 92 ~i~~~d~~~~~~------~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~------ 158 (723)
T 1xfd_A 92 YYVLSKIPHGDP------QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVI------ 158 (723)
T ss_dssp EEEEEESSSCCC------EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTE------
T ss_pred eEEEEECCCCce------EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCce------
Confidence 888999998652 11222345666799999999997 788775 8999999987654322211100000
Q ss_pred ccccccccc-cccceeeeecCCeEEEEEcCCCCEEEEec--CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCcccc
Q 001123 293 SYIDLRSHL-SVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAME 369 (1149)
Q Consensus 293 ~~~~l~~~~-~~~g~~~~~~~dv~~las~~~~~~v~Sas--d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~ 369 (1149)
..++. ++.. .-..+.+..+++++++..|+.++ ...+++|++..... .....+..+.++..+.. .
T Consensus 159 ----~~g~~~~v~~--ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~G~~--~ 225 (723)
T 1xfd_A 159 ----YNGLSDWLYE--EEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG-----SIYPTVKPYHYPKAGSE--N 225 (723)
T ss_dssp ----EEEECCHHHH--HTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS-----SSSCCCEEEECCBTTSC--C
T ss_pred ----ECcccceeEE--EEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC-----cCCCcceeccCCCCCCC--C
Confidence 00000 0000 00001236778889988887665 24578887642110 00001112222221111 0
Q ss_pred ccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCcEE-EEeC----CCeEEE
Q 001123 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIW-TGGA----NGLLLQ 444 (1149)
Q Consensus 370 ~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~la-Sgs~----DgtIrl 444 (1149)
....+.++....... ...+.....+..+...+..++++|||+++ +.+. +..|++
T Consensus 226 ~~~~l~~~d~~~~~~---------------------~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~ 284 (723)
T 1xfd_A 226 PSISLHVIGLNGPTH---------------------DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTL 284 (723)
T ss_dssp CEEEEEEEESSSSCC---------------------CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEE
T ss_pred CeeEEEEEECCCCce---------------------eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEE
Confidence 011122222111000 00110000112234567889999999844 4432 368999
Q ss_pred EeC-CCCeeEeeecC-CccEE------EEEecCCEEEE--eecCc------EEEEEe-CCCce---eeeeeccCCCeEE-
Q 001123 445 WDP-NGNRLQDFQYL-PFAVQ------CLCTFGSQIWV--GYMNG------IVQVLD-LEGNL---LGGWVAHSSPVIK- 503 (1149)
Q Consensus 445 WD~-tG~~l~tl~gH-~~~V~------sls~dG~~LaS--Gs~DG------tIrlWD-~~G~~---l~~l~gH~~~V~s- 503 (1149)
||+ +|++...+..+ ...+. ++++||++|+. +..++ .|++|| .++.. +..+..+...+..
T Consensus 285 ~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~ 364 (723)
T 1xfd_A 285 CDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKI 364 (723)
T ss_dssp EETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEE
T ss_pred EeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEee
Confidence 999 78877766543 33332 44568997775 45667 688888 55544 6666654444543
Q ss_pred --EEecCCeEEeecCC---CceeeeeccCCC
Q 001123 504 --MAVGAGYIFTLANH---GGIRGWNVTSPG 529 (1149)
Q Consensus 504 --La~Dg~~LaSgS~D---gtIRlWdl~sp~ 529 (1149)
.++||+.|+..+.+ +++++|++...+
T Consensus 365 ~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~ 395 (723)
T 1xfd_A 365 LAYDEKGNKIYFLSTEDLPRRRQLYSANTVG 395 (723)
T ss_dssp EEEETTTTEEEEEESSSCTTCCEEEEECSST
T ss_pred eEEcCCCCEEEEEEcCCCCcceEEEEEeCCC
Confidence 34799998766554 889999986543
No 145
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.72 E-value=3e-16 Score=191.07 Aligned_cols=256 Identities=10% Similarity=0.004 Sum_probs=169.9
Q ss_pred CCceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCCCCCCCccceEEeecCC-CCEEEEEEeCCCc-EEEEEC---CCcE
Q 001123 191 VSSVMCMVGDEASGVVWSGHR-DGRIMCWKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYGD-LWSGSE---GGGI 264 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~-DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~-~~VtsVafSpdG~-L~SGS~---DgTI 264 (1149)
..+|.+++|+|||++||+++. ||++++|+++++. ...+..|. ..|.+++|||| + +++++. +...
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~---------~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~ 90 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE---------TVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQH 90 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE---------EEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCC---------cEeeecccccccccccCCCC-eEEEEeccCCCCcce
Confidence 568999999999999999987 9999999997654 45566665 68999999999 7 566665 5667
Q ss_pred EEEeCCC--cceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCC--EEEEecCCceEEEEcC
Q 001123 265 KIWPWEA--IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA--KVWSAGFLSFALWDAR 340 (1149)
Q Consensus 265 RVWdl~t--~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~--~v~Sasd~tIrLWD~~ 340 (1149)
+||.+.. ......+.... .....++++++. .+++++++.+.|||+.
T Consensus 91 ~l~~~~~~~~g~~~~l~~~~------------------------------~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~ 140 (582)
T 3o4h_A 91 ALFKVNTSRPGEEQRLEAVK------------------------------PMRILSGVDTGEAVVFTGATEDRVALYALD 140 (582)
T ss_dssp EEEEEETTSTTCCEECTTSC------------------------------SBEEEEEEECSSCEEEEEECSSCEEEEEEE
T ss_pred EEEEEeccCCCccccccCCC------------------------------CceeeeeCCCCCeEEEEecCCCCceEEEcc
Confidence 7876643 11111111110 011223333332 3445556666799999
Q ss_pred CccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCC----cEEEEee--cc-
Q 001123 341 TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD----AVRRVAA--KG- 413 (1149)
Q Consensus 341 TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d----~v~rv~~--~g- 413 (1149)
+|++........ ..+.+|+ +++.++.+..+ ....+++ .+
T Consensus 141 ~g~~~~l~~~~~---~~~~~sp-------------------------------DG~~la~~~~~~~~~~~i~~~d~~~g~ 186 (582)
T 3o4h_A 141 GGGLRELARLPG---FGFVSDI-------------------------------RGDLIAGLGFFGGGRVSLFTSNLSSGG 186 (582)
T ss_dssp TTEEEEEEEESS---CEEEEEE-------------------------------ETTEEEEEEEEETTEEEEEEEETTTCC
T ss_pred CCcEEEeecCCC---ceEEECC-------------------------------CCCEEEEEEEcCCCCeEEEEEcCCCCC
Confidence 998766554333 2333443 33333322221 1122222 11
Q ss_pred --cccCCCCceEEEEEcCCCc-EEEEeCCC--eEEEEeC-CCCeeEeeecCCccEEE----------EEecCCEEEEeec
Q 001123 414 --GFGDDNRRTEALTTSIDGM-IWTGGANG--LLLQWDP-NGNRLQDFQYLPFAVQC----------LCTFGSQIWVGYM 477 (1149)
Q Consensus 414 --~~~~~~~~V~ava~s~Dg~-laSgs~Dg--tIrlWD~-tG~~l~tl~gH~~~V~s----------ls~dG~~LaSGs~ 477 (1149)
.+..+...+..+++||||+ |+++..++ +|++||+ +|++. .+.+|...+.+ +++||+.+++++.
T Consensus 187 ~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~ 265 (582)
T 3o4h_A 187 LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARR 265 (582)
T ss_dssp CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEE
T ss_pred ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEc
Confidence 3456666788899999998 67777788 8999999 56766 77777766553 5568999999999
Q ss_pred CcEEEEEeCCCceeeeeeccCCCeEEEEe-cCCeEEeecCCCc---eeeeec
Q 001123 478 NGIVQVLDLEGNLLGGWVAHSSPVIKMAV-GAGYIFTLANHGG---IRGWNV 525 (1149)
Q Consensus 478 DGtIrlWD~~G~~l~~l~gH~~~V~sLa~-Dg~~LaSgS~Dgt---IRlWdl 525 (1149)
||+++||++ |+++.. +.+.|.++++ |++++++++.+.+ +.+|++
T Consensus 266 ~g~~~l~~~-g~~~~~---~~~~v~~~~~sdg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 266 EGRSAVFID-GERVEA---PQGNHGRVVLWRGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp TTEEEEEET-TEEECC---CSSEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred CCcEEEEEE-CCeecc---CCCceEEEEecCCEEEEEEcCCCCCCeEEEEcC
Confidence 999999999 877653 3456766653 8889999888754 555654
No 146
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.71 E-value=6.6e-15 Score=165.06 Aligned_cols=267 Identities=9% Similarity=0.050 Sum_probs=177.6
Q ss_pred cceeEEEEEee--CCeEEEeC--------CCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEc
Q 001123 131 IGCFLRTIVCT--EEQLWAGG--------ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGD 200 (1149)
Q Consensus 131 ~~~~l~~l~~~--~~~l~ag~--------D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs 200 (1149)
.+.....++.+ ++.++.+. +++|.+||.+++..... +.....+.+++++
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~---------------------~~~~~~~~~~~~s 97 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA---------------------IHNDLKPFGATIN 97 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE---------------------EEESSCCCSEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE---------------------EecCCCcceEEEC
Confidence 33344455554 56777643 56799999987765433 1112345678999
Q ss_pred CCCC-EEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCC---------EEEEEEeCCCc-EEEEE--CCCcEEEE
Q 001123 201 EASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGP---------VLSLCISSYGD-LWSGS--EGGGIKIW 267 (1149)
Q Consensus 201 ~dg~-~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~---------VtsVafSpdG~-L~SGS--~DgTIRVW 267 (1149)
++|+ +++++..++.|.+||+.++. ....+..|.+. +.+++|+|+|+ |+.++ .+++|.+|
T Consensus 98 ~dg~~l~v~~~~~~~v~~~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~ 169 (353)
T 3vgz_A 98 NTTQTLWFGNTVNSAVTAIDAKTGE--------VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVV 169 (353)
T ss_dssp TTTTEEEEEETTTTEEEEEETTTCC--------EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEE
T ss_pred CCCCEEEEEecCCCEEEEEeCCCCe--------eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEE
Confidence 9998 55566678999999998865 24455544322 78999999997 65444 58999999
Q ss_pred eCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEE
Q 001123 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (1149)
Q Consensus 268 dl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~ 346 (1149)
|+.+++....+.... .....+++++++..++.+. ++.|.+||+.+++.+.
T Consensus 170 d~~~~~~~~~~~~~~-----------------------------~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~ 220 (353)
T 3vgz_A 170 DGGNIKLKTAIQNTG-----------------------------KMSTGLALDSEGKRLYTTNADGELITIDTADNKILS 220 (353)
T ss_dssp ETTTTEEEEEECCCC-----------------------------TTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEE
T ss_pred cCCCCceEEEecCCC-----------------------------CccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEE
Confidence 998765433221000 1123345667777666554 5789999999988776
Q ss_pred EEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEE
Q 001123 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (1149)
Q Consensus 347 ~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava 426 (1149)
.+..... ++...+..++
T Consensus 221 ~~~~~~~---------------------------------------------------------------~~~~~~~~~~ 237 (353)
T 3vgz_A 221 RKKLLDD---------------------------------------------------------------GKEHFFINIS 237 (353)
T ss_dssp EEECCCS---------------------------------------------------------------SSCCCEEEEE
T ss_pred EEEcCCC---------------------------------------------------------------CCCcccceEE
Confidence 5532110 0112244567
Q ss_pred EcCCCc-EEEEeC-CCeEEEEeC-CCCeeEeeecCCccEEEEEecCCEEEEee-cCcEEEEEeCC-CceeeeeeccCCCe
Q 001123 427 TSIDGM-IWTGGA-NGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGY-MNGIVQVLDLE-GNLLGGWVAHSSPV 501 (1149)
Q Consensus 427 ~s~Dg~-laSgs~-DgtIrlWD~-tG~~l~tl~gH~~~V~sls~dG~~LaSGs-~DGtIrlWD~~-G~~l~~l~gH~~~V 501 (1149)
++|||. ++.++. ++.|.+||. +|+.+..+..+...-.+++++|++|++++ .+++|.+||.+ ++.+..+..+. .+
T Consensus 238 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~ 316 (353)
T 3vgz_A 238 LDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HP 316 (353)
T ss_dssp EETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EE
T ss_pred ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CC
Confidence 888876 665554 599999999 78888887765433345567899777666 68999999986 77777776544 56
Q ss_pred EEEE--ecCCeEEeecCCCc
Q 001123 502 IKMA--VGAGYIFTLANHGG 519 (1149)
Q Consensus 502 ~sLa--~Dg~~LaSgS~Dgt 519 (1149)
.+++ +||++|+.+..++.
T Consensus 317 ~~~~~s~dg~~l~v~~~~~~ 336 (353)
T 3vgz_A 317 NSLALSADGKTLYVSVKQKS 336 (353)
T ss_dssp EEEEECTTSCEEEEEEECCC
T ss_pred CeEEEcCCCCEEEEEEcccc
Confidence 7776 58887776655543
No 147
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.70 E-value=1.7e-15 Score=188.26 Aligned_cols=286 Identities=12% Similarity=0.044 Sum_probs=172.8
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCC
Q 001123 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (1149)
Q Consensus 192 ~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~ 270 (1149)
..|.+++|||| +.|+.+ .|++|++||+.++. ...+..|.+.|.+++|||||+ |++ +.|++|++||+.
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~---------~~~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~ 149 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARK---------VTYLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGG 149 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTE---------EEEEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECB
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCc---------eEEccCCcccccCCcCCCCCCEEEE-EECCeEEEEecC
Confidence 57999999999 554444 46999999998754 455677888899999999998 666 478999999998
Q ss_pred C-----cceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec---------------
Q 001123 271 A-----IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--------------- 330 (1149)
Q Consensus 271 t-----~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas--------------- 330 (1149)
+ ++.............. +...... ....+..+.+++++..|+.++
T Consensus 150 ~~~~~~g~~~~~~~~~~~~~~~------g~~~~~e---------e~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~ 214 (706)
T 2z3z_A 150 KLGEGMSRAIAVTIDGTETLVY------GQAVHQR---------EFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYH 214 (706)
T ss_dssp CTTSCCCCCEESCSCCBTTEEE------SSCCGGG---------CTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECC
T ss_pred cccccCCCcEEeccCCCCCeEc------ccchhhh---------hcCCCceEEECCCCCEEEEEEECCCCCceEEeeccC
Confidence 7 5433211111100000 0000000 001234556677777666553
Q ss_pred -------------------CCceEEEEcCCccEEEEEe--cCCceeeEEeeccCCCccccc--c-----ceeeEEecCCC
Q 001123 331 -------------------FLSFALWDARTRELLKVFN--IDGQIENRVDMSLLPDFAMED--E-----FKTKIVTSSKK 382 (1149)
Q Consensus 331 -------------------d~tIrLWD~~TG~~L~~l~--~~g~~~~~v~~S~~~~~~~~~--~-----~~~~~~s~~~k 382 (1149)
+..|.+||+.+|+...... .+...+..+.+++++...+.. + ..+.++....
T Consensus 215 ~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~- 293 (706)
T 2z3z_A 215 PLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET- 293 (706)
T ss_dssp SSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT-
T ss_pred CCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC-
Confidence 2468999999988765543 233445566676665533210 0 0111111100
Q ss_pred CccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcC--CCc-EEEEeCCCeEEEEeC--CCCeeEeeec
Q 001123 383 DKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI--DGM-IWTGGANGLLLQWDP--NGNRLQDFQY 457 (1149)
Q Consensus 383 ~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~--Dg~-laSgs~DgtIrlWD~--tG~~l~tl~g 457 (1149)
| .....+.... -......+..++++| ||. +++++.|++++||++ +|..++.+..
T Consensus 294 ------------------g--~~~~~~~~~~-~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~ 352 (706)
T 2z3z_A 294 ------------------G--RFVRTLFVET-DKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK 352 (706)
T ss_dssp ------------------C--CEEEEEEEEE-CSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC
T ss_pred ------------------C--ceeeEEEEcc-CCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC
Confidence 0 0001110000 000001234578999 987 667888999999987 6888899998
Q ss_pred CCccEEE-EE--ecCCEEEEeecC-c----EEEEEeCCCceeeeeeccCCCeEEEE--ecCCeEEeecCC----Cceeee
Q 001123 458 LPFAVQC-LC--TFGSQIWVGYMN-G----IVQVLDLEGNLLGGWVAHSSPVIKMA--VGAGYIFTLANH----GGIRGW 523 (1149)
Q Consensus 458 H~~~V~s-ls--~dG~~LaSGs~D-G----tIrlWD~~G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~D----gtIRlW 523 (1149)
|...|.+ ++ ++|++|+.++.+ + .|..||+++..+..+. |...+.+++ +||++++..+.+ +.|++|
T Consensus 353 ~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~ 431 (706)
T 2z3z_A 353 GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVT 431 (706)
T ss_dssp SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEE
T ss_pred CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEE
Confidence 8887865 44 478888765544 4 7777887644344443 777888877 589988765433 459999
Q ss_pred eccC
Q 001123 524 NVTS 527 (1149)
Q Consensus 524 dl~s 527 (1149)
|+..
T Consensus 432 d~~~ 435 (706)
T 2z3z_A 432 NIGK 435 (706)
T ss_dssp ESSS
T ss_pred ECCC
Confidence 9864
No 148
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.70 E-value=5e-15 Score=164.35 Aligned_cols=279 Identities=8% Similarity=0.042 Sum_probs=171.0
Q ss_pred EEE-eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCC-ceEEEEEcCCCCEE-EEEeCCCeEEEEECC
Q 001123 145 LWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVS-SVMCMVGDEASGVV-WSGHRDGRIMCWKMN 221 (1149)
Q Consensus 145 l~a-g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~-~V~~lafs~dg~~L-aSGS~DGtIRvWdl~ 221 (1149)
+++ +.+++|++||++++..... + ...+.. .+.+++|+|+|+.| ++++.++.|.+||+.
T Consensus 4 ~v~~~~~~~v~~~d~~~~~~~~~-----------------~--~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 4 ILAPARPDKLVVIDTEKMAVDKV-----------------I--TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEETTTEEEEEETTTTEEEEE-----------------E--ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEcCCCCeEEEEECCCCcEEEE-----------------E--EcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 344 4689999999987765432 0 011011 46789999999765 667778999999998
Q ss_pred CCCCCCCCCccceEEee-cC----CCCEEEEEEeCCCc-EEEEE------------CCCcEEEEeCCCcceeeecCCCcc
Q 001123 222 ARLLDSDDGFGEVLSWQ-AH----RGPVLSLCISSYGD-LWSGS------------EGGGIKIWPWEAIEKALSLKPEER 283 (1149)
Q Consensus 222 ~g~~~~~~~~~~~~~l~-GH----~~~VtsVafSpdG~-L~SGS------------~DgTIRVWdl~t~~~~~~l~~~~~ 283 (1149)
++. ....+. ++ ...+.+++|+|+|+ |++++ .|+.|++||+.+++....+..
T Consensus 65 ~~~--------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--- 133 (337)
T 1pby_B 65 TGE--------TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA--- 133 (337)
T ss_dssp TCC--------EEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC---
T ss_pred CCC--------eEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC---
Confidence 765 233333 22 23678899999996 76665 579999999987553322110
Q ss_pred eeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEecCCceeeEEeeccC
Q 001123 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLL 363 (1149)
Q Consensus 284 ~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~ 363 (1149)
...+..+++++++..++.+ ++.|.+||+.+++++..+..+...
T Consensus 134 ---------------------------~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~~~--------- 176 (337)
T 1pby_B 134 ---------------------------PRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQSWE--------- 176 (337)
T ss_dssp ---------------------------CSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEECSTTTT---------
T ss_pred ---------------------------CCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeeeeccccC---------
Confidence 0123345677777777766 578999999999887766533210
Q ss_pred CCccccccceeeEEecCCCCccceeeeeeccccceEeec-CCcEEEEeecccccCCCCceEEEEEcCCCcEEEEeCCCeE
Q 001123 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA-ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLL 442 (1149)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~-~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~laSgs~DgtI 442 (1149)
. ...+.+++..++... .+..... +.......++...-......|
T Consensus 177 --------------------~---~~~~s~dg~~l~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~v 221 (337)
T 1pby_B 177 --------------------A---ETYAQPDVLAVWNQHESSGVMAT------------PFYTARKDIDPADPTAYRTGL 221 (337)
T ss_dssp --------------------T---TTBCCCBCCCCCCCCTTTTEEEE------------EEEEEBTTSCTTSGGGEEEEE
T ss_pred --------------------C---CceeCCCccEEeeeccCCCceee------------eeeccccccccccccccccce
Confidence 0 001222222221111 1111000 000000000000000011279
Q ss_pred EEEeC-CCCee-EeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEEEE--ecCCeEEeec
Q 001123 443 LQWDP-NGNRL-QDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLA 515 (1149)
Q Consensus 443 rlWD~-tG~~l-~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS 515 (1149)
.+||+ ++++. ..+..|...+.++++ +|++|+++ ++.|++||++ ++.+..+..+ ..+.+++ +||++|++++
T Consensus 222 ~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~ 298 (337)
T 1pby_B 222 LTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGG 298 (337)
T ss_dssp EEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEES
T ss_pred EEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEc
Confidence 99999 67664 334456666766654 79999998 7999999986 6776666543 3466666 5899999999
Q ss_pred CCCceeeeeccCC
Q 001123 516 NHGGIRGWNVTSP 528 (1149)
Q Consensus 516 ~DgtIRlWdl~sp 528 (1149)
.|+.|++||+.+.
T Consensus 299 ~~~~i~v~d~~~~ 311 (337)
T 1pby_B 299 ALGDLAAYDAETL 311 (337)
T ss_dssp BSSEEEEEETTTC
T ss_pred CCCcEEEEECcCC
Confidence 9999999998653
No 149
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.69 E-value=1.3e-15 Score=190.21 Aligned_cols=279 Identities=8% Similarity=-0.019 Sum_probs=168.2
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCC
Q 001123 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (1149)
Q Consensus 192 ~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~ 270 (1149)
..|.+++|||||++|++++. ++|++||+.++.. .....+.+|.+.|.+++|||||+ |++++ +++|++||+.
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~------~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~ 180 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGK------AAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLA 180 (741)
T ss_dssp EESCCCEECTTSSEEEEEET-TEEEEEESSSCST------TSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETT
T ss_pred cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCc------ceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecC
Confidence 34788999999999999987 9999999988610 01445678889999999999998 67776 5699999998
Q ss_pred CcceeeecCCCcceeeEEEeeecccccccc-ccccceeeeecCCeEEEEEcCCCCEEEEec-CC----------------
Q 001123 271 AIEKALSLKPEERHTAALIVERSYIDLRSH-LSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FL---------------- 332 (1149)
Q Consensus 271 t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~-~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~---------------- 332 (1149)
+++...........+. .+. .++.. -....+..+++++++..|+.++ +.
T Consensus 181 ~g~~~~~~~~~~~~~~-----------~g~~~~v~~---~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~ 246 (741)
T 2ecf_A 181 SGRQMQLTADGSTTIG-----------NGIAEFVAD---EEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRT 246 (741)
T ss_dssp TTEEEECCCCCCSSEE-----------ESCCCHHHH---HHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCE
T ss_pred CCCEEEeccCCcccee-----------ccccceeee---eccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcc
Confidence 7654322111110000 000 00000 0001123455666666555442 21
Q ss_pred -----------------ceEEEEcCC-ccEEEEEec--CCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeee
Q 001123 333 -----------------SFALWDART-RELLKVFNI--DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFF 392 (1149)
Q Consensus 333 -----------------tIrLWD~~T-G~~L~~l~~--~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~ 392 (1149)
.|.+||+.+ +++...... +...+..+.+ +++.
T Consensus 247 ~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~--------------------------- 298 (741)
T 2ecf_A 247 DVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQ--------------------------- 298 (741)
T ss_dssp EEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETT---------------------------
T ss_pred cceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCC---------------------------
Confidence 577888888 776554322 2333334444 4333
Q ss_pred ccccceEeecC-----CcEEEEeec--c----cccCCC-C---ceEEEEEcCCCc-EEEEeCCCeEEEEeC--CCCeeEe
Q 001123 393 QRSRNAIMGAA-----DAVRRVAAK--G----GFGDDN-R---RTEALTTSIDGM-IWTGGANGLLLQWDP--NGNRLQD 454 (1149)
Q Consensus 393 ~~~~~~i~G~~-----d~v~rv~~~--g----~~~~~~-~---~V~ava~s~Dg~-laSgs~DgtIrlWD~--tG~~l~t 454 (1149)
.++.... +....+++. + .+..+. . .+..++++|||+ +++++.||+++||.. +|. +..
T Consensus 299 ----~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~ 373 (741)
T 2ecf_A 299 ----HLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAA 373 (741)
T ss_dssp ----EEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEE
T ss_pred ----EEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eee
Confidence 2222111 111111110 0 011111 1 234678999997 567888998788766 577 888
Q ss_pred eecCCccEEEE---EecCCEEE-EeecCc--EEEEEeC--CCceeeeeeccCCCeEEEE--ecCCeEEeecCC----Cce
Q 001123 455 FQYLPFAVQCL---CTFGSQIW-VGYMNG--IVQVLDL--EGNLLGGWVAHSSPVIKMA--VGAGYIFTLANH----GGI 520 (1149)
Q Consensus 455 l~gH~~~V~sl---s~dG~~La-SGs~DG--tIrlWD~--~G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~D----gtI 520 (1149)
+..|...|.++ +++|++|+ +++.++ +++||++ +|+.+..+.+ ...+.+++ +||++|+....+ ..+
T Consensus 374 l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~ 452 (741)
T 2ecf_A 374 LTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQI 452 (741)
T ss_dssp SCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred eeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeE
Confidence 98888888754 45788775 455555 8999995 4776677766 66777776 689887755332 457
Q ss_pred eeeecc
Q 001123 521 RGWNVT 526 (1149)
Q Consensus 521 RlWdl~ 526 (1149)
.+|+..
T Consensus 453 ~l~~~~ 458 (741)
T 2ecf_A 453 ELFRAN 458 (741)
T ss_dssp EEEETT
T ss_pred EEEEcC
Confidence 788753
No 150
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.66 E-value=3.5e-14 Score=159.18 Aligned_cols=240 Identities=15% Similarity=0.151 Sum_probs=164.7
Q ss_pred CceEEEEEcCCCCEEEEEeC-------CCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-E-EEEECCC
Q 001123 192 SSVMCMVGDEASGVVWSGHR-------DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGG 262 (1149)
Q Consensus 192 ~~V~~lafs~dg~~LaSGS~-------DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L-~SGS~Dg 262 (1149)
..+..++|+|+|+.|+.++. +++|.+||+.++. ....+.. ...+.+++|+|+|+ | ++++.++
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~--------~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~ 111 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE--------VTQAIHN-DLKPFGATINNTTQTLWFGNTVNS 111 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC--------EEEEEEE-SSCCCSEEEETTTTEEEEEETTTT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe--------EEEEEec-CCCcceEEECCCCCEEEEEecCCC
Confidence 46778999999999988884 5689999998865 2444443 34578899999997 5 4666789
Q ss_pred cEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec---CCceEEEEc
Q 001123 263 GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALWDA 339 (1149)
Q Consensus 263 TIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas---d~tIrLWD~ 339 (1149)
+|.+||+++++....+...... ..... .......+++++++..++.+. ++.|.+||+
T Consensus 112 ~v~~~d~~~~~~~~~~~~~~~~----------------~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~ 171 (353)
T 3vgz_A 112 AVTAIDAKTGEVKGRLVLDDRK----------------RTEEV----RPLQPRELVADDATNTVYISGIGKESVIWVVDG 171 (353)
T ss_dssp EEEEEETTTCCEEEEEESCCCC----------------CCSSC----CCCEEEEEEEETTTTEEEEEEESSSCEEEEEET
T ss_pred EEEEEeCCCCeeEEEEecCCCc----------------ccccc----CCCCCceEEECCCCCEEEEEecCCCceEEEEcC
Confidence 9999999887643322111000 00000 001145677888888776554 567999999
Q ss_pred CCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCC
Q 001123 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (1149)
Q Consensus 340 ~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~ 419 (1149)
.+++.+..+...+.
T Consensus 172 ~~~~~~~~~~~~~~------------------------------------------------------------------ 185 (353)
T 3vgz_A 172 GNIKLKTAIQNTGK------------------------------------------------------------------ 185 (353)
T ss_dssp TTTEEEEEECCCCT------------------------------------------------------------------
T ss_pred CCCceEEEecCCCC------------------------------------------------------------------
Confidence 99887765532111
Q ss_pred CceEEEEEcCCCc-EEEEeCCCeEEEEeC-CCCeeEeeec----CCccEEEEE--ecCCEEEEeecC-cEEEEEeCC-Cc
Q 001123 420 RRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQY----LPFAVQCLC--TFGSQIWVGYMN-GIVQVLDLE-GN 489 (1149)
Q Consensus 420 ~~V~ava~s~Dg~-laSgs~DgtIrlWD~-tG~~l~tl~g----H~~~V~sls--~dG~~LaSGs~D-GtIrlWD~~-G~ 489 (1149)
.+..++++|||. +++++.++.|.+||. +++.+..+.. +...+.+++ ++|++|++++.+ +.|.+||.+ ++
T Consensus 186 -~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 264 (353)
T 3vgz_A 186 -MSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN 264 (353)
T ss_dssp -TCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC
T ss_pred -ccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence 012234778776 778888999999999 7888777664 445566554 579988877754 999999985 78
Q ss_pred eeeeeeccCCCeEEEEecCCeEE-eecCCCceeeeeccC
Q 001123 490 LLGGWVAHSSPVIKMAVGAGYIF-TLANHGGIRGWNVTS 527 (1149)
Q Consensus 490 ~l~~l~gH~~~V~sLa~Dg~~La-SgS~DgtIRlWdl~s 527 (1149)
.+..+..+...-..+.+||++++ +...+++|.+||+.+
T Consensus 265 ~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 303 (353)
T 3vgz_A 265 ILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKS 303 (353)
T ss_dssp EEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred EEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCC
Confidence 77777655543344557888655 455799999999764
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.64 E-value=5.4e-14 Score=158.71 Aligned_cols=248 Identities=10% Similarity=0.084 Sum_probs=156.8
Q ss_pred CCceEEEEEcCCCCEEEEEeC---CCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEE-CCCcEE
Q 001123 191 VSSVMCMVGDEASGVVWSGHR---DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGIK 265 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~---DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS-~DgTIR 265 (1149)
...+..++|+|||+ |++++. |+.|++|++.++.. ..+..+.+|...+..|+|+|||+ |++++ .|++|+
T Consensus 39 ~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~------~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~ 111 (347)
T 3hfq_A 39 TQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA------HKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAE 111 (347)
T ss_dssp CSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE------EEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEE
T ss_pred cCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE------EEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEE
Confidence 44567799999999 555544 79999999976542 23445567888899999999998 77777 789999
Q ss_pred EEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcC-Ccc
Q 001123 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDAR-TRE 343 (1149)
Q Consensus 266 VWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~-TG~ 343 (1149)
+|++........+ ..+. ..+...... .....+.++++++++..+++.. ++.|++||+. +|+
T Consensus 112 v~~~~~~g~~~~~-------~~~~-------~~~~~p~~~---~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~ 174 (347)
T 3hfq_A 112 VMKIAADGALTLT-------DTVQ-------HSGHGPRPE---QDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQ 174 (347)
T ss_dssp EEEECTTSCEEEE-------EEEE-------CCCCCSSTT---CSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSC
T ss_pred EEEeCCCCCeeec-------ceee-------cCCCCCCcc---ccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCc
Confidence 9999531111100 0000 000000000 0113466788888887444433 5679999987 444
Q ss_pred EEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceE
Q 001123 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (1149)
Q Consensus 344 ~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ 423 (1149)
+..... .. ......+.
T Consensus 175 ~~~~~~---------------------------~~-------------------------------------~~~g~~p~ 190 (347)
T 3hfq_A 175 LSEQSV---------------------------LT-------------------------------------MEAGFGPR 190 (347)
T ss_dssp EEEEEE---------------------------EE-------------------------------------CCTTCCEE
T ss_pred EEEeee---------------------------EE-------------------------------------cCCCCCCc
Confidence 321100 00 00001234
Q ss_pred EEEEcCCCc-EEE-EeCCCeEEEEeCC---CCe--eEeeecCC------ccEEEEE--ecCCEEE-EeecCcEEEEEeCC
Q 001123 424 ALTTSIDGM-IWT-GGANGLLLQWDPN---GNR--LQDFQYLP------FAVQCLC--TFGSQIW-VGYMNGIVQVLDLE 487 (1149)
Q Consensus 424 ava~s~Dg~-laS-gs~DgtIrlWD~t---G~~--l~tl~gH~------~~V~sls--~dG~~La-SGs~DGtIrlWD~~ 487 (1149)
.++++|||+ +++ +..++.|++|+++ |+. +..+.... ..+..++ +||++|+ ++..+++|++||++
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 577999997 554 5568899999983 432 33443332 3466665 4799885 45568999999975
Q ss_pred --C--ceeeeeeccCCCeEEEE--ecCCeEEeecC-CCceeeeecc
Q 001123 488 --G--NLLGGWVAHSSPVIKMA--VGAGYIFTLAN-HGGIRGWNVT 526 (1149)
Q Consensus 488 --G--~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~-DgtIRlWdl~ 526 (1149)
| +.+..+..|...+..++ +||++|++++. +++|++|++.
T Consensus 271 ~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 271 ADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp GGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 4 45667777777777877 58998888765 5899999764
No 152
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.63 E-value=2.6e-14 Score=154.42 Aligned_cols=213 Identities=9% Similarity=-0.072 Sum_probs=149.8
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCC-cceeeecCCCccee
Q 001123 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA-IEKALSLKPEERHT 285 (1149)
Q Consensus 208 SGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t-~~~~~~l~~~~~~~ 285 (1149)
+++.|++|++||+.++. ...+.+|.+.|.+++|+|+|+ |++++ ++.|++||+.+ ++.......+.
T Consensus 17 ~~~~~~~i~~~d~~~~~---------~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~--- 83 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRK---------MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFA--- 83 (297)
T ss_dssp -CCCCEEEEEEETTTTE---------EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTC---
T ss_pred CCCcceeEEEEeCCCCc---------eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccc---
Confidence 56789999999998854 456778999999999999998 66665 88999999987 55332211110
Q ss_pred eEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecC---CceEEEEc--CCccEEEEEecCCceeeEEee
Q 001123 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF---LSFALWDA--RTRELLKVFNIDGQIENRVDM 360 (1149)
Q Consensus 286 ~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd---~tIrLWD~--~TG~~L~~l~~~g~~~~~v~~ 360 (1149)
...+.++++++++..++.+.. +..+||.+ .+++. ..
T Consensus 84 -------------------------~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~------------- 124 (297)
T 2ojh_A 84 -------------------------TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RL------------- 124 (297)
T ss_dssp -------------------------CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EE-------------
T ss_pred -------------------------cccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EE-------------
Confidence 012334566777777766552 34566654 22210 00
Q ss_pred ccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EE-EEeC
Q 001123 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IW-TGGA 438 (1149)
Q Consensus 361 S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-la-Sgs~ 438 (1149)
+..+ ..+..++++|||. ++ +++.
T Consensus 125 ------------------------------------------------------~~~~-~~~~~~~~spdg~~l~~~~~~ 149 (297)
T 2ojh_A 125 ------------------------------------------------------MTKN-LPSYWHGWSPDGKSFTYCGIR 149 (297)
T ss_dssp ------------------------------------------------------CCSS-SSEEEEEECTTSSEEEEEEEE
T ss_pred ------------------------------------------------------eecC-CCccceEECCCCCEEEEEECC
Confidence 0000 1245567899987 55 7888
Q ss_pred CCeEEEEeC--CCCeeEeeecCCccEEEEEe--cCCEEEEee-cCcEEEEEeC--CCceeeeeeccCCCeEEEE--ecCC
Q 001123 439 NGLLLQWDP--NGNRLQDFQYLPFAVQCLCT--FGSQIWVGY-MNGIVQVLDL--EGNLLGGWVAHSSPVIKMA--VGAG 509 (1149)
Q Consensus 439 DgtIrlWD~--tG~~l~tl~gH~~~V~sls~--dG~~LaSGs-~DGtIrlWD~--~G~~l~~l~gH~~~V~sLa--~Dg~ 509 (1149)
|++++||++ .+.....+..|...+.++++ +|++|+.++ .++.++||++ ++..+..+..|...+..++ +||+
T Consensus 150 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 229 (297)
T 2ojh_A 150 DQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGD 229 (297)
T ss_dssp TTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSS
T ss_pred CCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCC
Confidence 999999996 45566777788888988865 789888766 5899999985 4677788889988888877 5999
Q ss_pred eEEeecCC-----------CceeeeeccC
Q 001123 510 YIFTLANH-----------GGIRGWNVTS 527 (1149)
Q Consensus 510 ~LaSgS~D-----------gtIRlWdl~s 527 (1149)
+|+.++.| +.|++||+..
T Consensus 230 ~l~~~~~~~~~~~~~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 230 KVVFVSYDADVFDHPRDLDVRVQLMDMDG 258 (297)
T ss_dssp EEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred EEEEEEcCCCCCcccccCceEEEEEecCC
Confidence 99988876 5688898753
No 153
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.63 E-value=2.6e-15 Score=186.62 Aligned_cols=280 Identities=10% Similarity=-0.017 Sum_probs=176.7
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCC---CEEEEEEeCCCc-EEEEECC-------
Q 001123 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG---PVLSLCISSYGD-LWSGSEG------- 261 (1149)
Q Consensus 193 ~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~---~VtsVafSpdG~-L~SGS~D------- 261 (1149)
.+.+++|+|||+++++ +.||+|++||+.++.+ ...+.+|.. .|.+++|||||+ |++++.|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~--------~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~ 88 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTS--------TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHS 88 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC--------EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSC
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcE--------EEEeccccccccccceEEECCCCCEEEEEecCccceeec
Confidence 3567899999998877 7899999999998762 455667765 499999999998 7888775
Q ss_pred --CcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEc
Q 001123 262 --GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDA 339 (1149)
Q Consensus 262 --gTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~ 339 (1149)
++|++||+++++. ..+..... + ...+..+++++++.+|+.+++++|++||+
T Consensus 89 ~~~~i~~~d~~~~~~-~~l~~~~~----------------~----------~~~~~~~~~SPdG~~la~~~~~~i~~~~~ 141 (723)
T 1xfd_A 89 YTGYYVLSKIPHGDP-QSLDPPEV----------------S----------NAKLQYAGWGPKGQQLIFIFENNIYYCAH 141 (723)
T ss_dssp CCSEEEEEESSSCCC-EECCCTTC----------------C----------SCCCSBCCBCSSTTCEEEEETTEEEEESS
T ss_pred ceeeEEEEECCCCce-EeccCCcc----------------c----------cccccccEECCCCCEEEEEECCeEEEEEC
Confidence 7888999987653 22211110 0 01234456778888888888889999999
Q ss_pred CCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCc--EEEEeecccccC
Q 001123 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA--VRRVAAKGGFGD 417 (1149)
Q Consensus 340 ~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~--v~rv~~~g~~~~ 417 (1149)
.+|+..+....+...+ .+.+..+...++++ ......+.|+|+++.++....+. +..+........
T Consensus 142 ~~g~~~~~~~~~~~~~---~~~g~~~~v~~ee~----------~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~ 208 (723)
T 1xfd_A 142 VGKQAIRVVSTGKEGV---IYNGLSDWLYEEEI----------LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGS 208 (723)
T ss_dssp SSSCCEEEECCCBTTT---EEEEECCHHHHHTT----------SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSS
T ss_pred CCCceEEEecCCCCCc---eECcccceeEEEEe----------ccCcceEEECCCCCEEEEEEECCCccceEEeeccCCc
Confidence 9998876654321100 00000011111100 01123567888887776655432 211111111111
Q ss_pred CCCceEEEEEcCCCcEEEEeCCCeEEEEeC-CCCeeEeeecC------CccEEEEE--ecCCEEEEeec----CcEEEEE
Q 001123 418 DNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYL------PFAVQCLC--TFGSQIWVGYM----NGIVQVL 484 (1149)
Q Consensus 418 ~~~~V~ava~s~Dg~laSgs~DgtIrlWD~-tG~~l~tl~gH------~~~V~sls--~dG~~LaSGs~----DGtIrlW 484 (1149)
....+..+.++++|.. ..+.+|++||+ ++++...+..| ...+.+++ +||++|++.+. +..|++|
T Consensus 209 ~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~ 285 (723)
T 1xfd_A 209 IYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLC 285 (723)
T ss_dssp SSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEE
T ss_pred CCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEE
Confidence 2334677778777752 34568999999 66766777654 56677665 48999877653 4789999
Q ss_pred eCC-Cceeeeeec-cCCCeE----EEE--ecCCeEEee--cCCC------ceeeee
Q 001123 485 DLE-GNLLGGWVA-HSSPVI----KMA--VGAGYIFTL--ANHG------GIRGWN 524 (1149)
Q Consensus 485 D~~-G~~l~~l~g-H~~~V~----sLa--~Dg~~LaSg--S~Dg------tIRlWd 524 (1149)
|++ |++...+.. |.+++. +++ +||+.|+.+ ..|+ .|.+||
T Consensus 286 d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 286 DATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp ETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred eCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 986 676665544 445543 444 699987754 4566 455666
No 154
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.63 E-value=5.3e-14 Score=174.71 Aligned_cols=304 Identities=10% Similarity=-0.016 Sum_probs=174.9
Q ss_pred EEEEEee-CCeEEEeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCC
Q 001123 135 LRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (1149)
Q Consensus 135 l~~l~~~-~~~l~ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DG 213 (1149)
+..++.+ ++.+..+.|++|++||++++..... . .+ ...+.+++|||||+.|+++ .|+
T Consensus 84 v~~~~~spd~~~~~~~~~~i~~~d~~~~~~~~l------------------~--~~-~~~~~~~~~SpdG~~la~~-~~~ 141 (706)
T 2z3z_A 84 SFRTLDAGRGLVVLFTQGGLVGFDMLARKVTYL------------------F--DT-NEETASLDFSPVGDRVAYV-RNH 141 (706)
T ss_dssp CEEEEETTTTEEEEEETTEEEEEETTTTEEEEE------------------E--CC-TTCCTTCEECTTSSEEEEE-ETT
T ss_pred ceeEEECCCCeEEEEECCEEEEEECCCCceEEc------------------c--CC-cccccCCcCCCCCCEEEEE-ECC
Confidence 3444444 3556666789999999987653221 0 11 3456778999999999994 789
Q ss_pred eEEEEECCC-----CCCCCCCCccceEEeecCCCC--------------EEEEEEeCCCc-EEEEE--------------
Q 001123 214 RIMCWKMNA-----RLLDSDDGFGEVLSWQAHRGP--------------VLSLCISSYGD-LWSGS-------------- 259 (1149)
Q Consensus 214 tIRvWdl~~-----g~~~~~~~~~~~~~l~GH~~~--------------VtsVafSpdG~-L~SGS-------------- 259 (1149)
.|++|++.+ +.. .....++... +.+++|||||+ |++++
T Consensus 142 ~i~v~~~~~~~~~~g~~--------~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~ 213 (706)
T 2z3z_A 142 NLYIARGGKLGEGMSRA--------IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDY 213 (706)
T ss_dssp EEEEEECBCTTSCCCCC--------EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEEC
T ss_pred eEEEEecCcccccCCCc--------EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeecc
Confidence 999999987 552 2222333332 58999999998 77777
Q ss_pred -------------------CCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEc
Q 001123 260 -------------------EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD 320 (1149)
Q Consensus 260 -------------------~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~ 320 (1149)
.+.+|++||+++++........ .+ ...+..++++
T Consensus 214 ~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~-----------------~~----------~~~~~~~~~s 266 (706)
T 2z3z_A 214 HPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGE-----------------PK----------EKFLTNLSWS 266 (706)
T ss_dssp CSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCS-----------------CT----------TCEEEEEEEC
T ss_pred CCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCC-----------------CC----------ceeEeeEEEE
Confidence 4578999999876532211000 00 1235667788
Q ss_pred CCCCEEEEec-CC-----ceEEEEcCCccEEEEEe-c-CCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeee
Q 001123 321 HSRAKVWSAG-FL-----SFALWDARTRELLKVFN-I-DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFF 392 (1149)
Q Consensus 321 ~~~~~v~Sas-d~-----tIrLWD~~TG~~L~~l~-~-~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~ 392 (1149)
+++..|+.++ +. +|.+||+.+|+.+..+. . +.... .....+.|+
T Consensus 267 pdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~----------------------------~~~~~~~~s 318 (706)
T 2z3z_A 267 PDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYV----------------------------EPLHPLTFL 318 (706)
T ss_dssp TTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCC----------------------------CCCSCCEEC
T ss_pred CCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeE----------------------------CccCCceee
Confidence 8888776543 32 79999999994444332 1 11110 001123444
Q ss_pred c--cccceEeecCCcEEEEee---c----ccccCCCCceEE-EEEcCCCc-EEE-EeCCC----eEEEEeCCCCeeEeee
Q 001123 393 Q--RSRNAIMGAADAVRRVAA---K----GGFGDDNRRTEA-LTTSIDGM-IWT-GGANG----LLLQWDPNGNRLQDFQ 456 (1149)
Q Consensus 393 ~--~~~~~i~G~~d~v~rv~~---~----g~~~~~~~~V~a-va~s~Dg~-laS-gs~Dg----tIrlWD~tG~~l~tl~ 456 (1149)
+ +++.++++..++..+++. . ..+..+...+.. ++++|||. |+. ++.++ .|..||..+..+..+.
T Consensus 319 p~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 398 (706)
T 2z3z_A 319 PGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLT 398 (706)
T ss_dssp TTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESC
T ss_pred cCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceecc
Confidence 4 444444444444333321 1 124445555665 78999986 554 44444 6777777443355554
Q ss_pred cCCccEEEEEe--cCCEEEEeecC----cEEEEEeCCCceeeeeeccCCCeEEEEe-cCCeEEeecCCC--ceeeeec
Q 001123 457 YLPFAVQCLCT--FGSQIWVGYMN----GIVQVLDLEGNLLGGWVAHSSPVIKMAV-GAGYIFTLANHG--GIRGWNV 525 (1149)
Q Consensus 457 gH~~~V~sls~--dG~~LaSGs~D----GtIrlWD~~G~~l~~l~gH~~~V~sLa~-Dg~~LaSgS~Dg--tIRlWdl 525 (1149)
|...+.++++ ||++|+.++.+ +.|++||+++.. ..+..|...+..... ....+.--+.|+ .+..|-.
T Consensus 399 -~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 474 (706)
T 2z3z_A 399 -PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLLEAKNPDTGYAMPEIRTGTIMAADGQTPLYYKLT 474 (706)
T ss_dssp -CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE-EEEEECC------CCCCEEEEEEECTTSSSEEEEEEE
T ss_pred -CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe-EeeccccchhhhcCCCCcEEEEEEcCCCCEEEEEEEE
Confidence 5667777654 79988877554 579999987443 334445544443332 222222223454 5655543
No 155
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.63 E-value=5e-14 Score=157.38 Aligned_cols=284 Identities=10% Similarity=0.058 Sum_probs=162.1
Q ss_pred CCeEEE--eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEE-EEEeCCCeEEEE
Q 001123 142 EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV-WSGHRDGRIMCW 218 (1149)
Q Consensus 142 ~~~l~a--g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~L-aSGS~DGtIRvW 218 (1149)
++.+++ +.+++|++||++++..... + ...+...+..++|+|+|+.+ +++..++.|.+|
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~-----------------~--~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~ 70 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVYKS-----------------C--VMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGI 70 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEEE-----------------E--ECSSCCSSCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEEEE-----------------E--ecCCCCCCceeEECCCCCEEEEEeCCCCcEEEE
Confidence 445554 4688999999987765432 0 01101246689999999855 566789999999
Q ss_pred ECCCCCCCCCCCccceEEee-cC-----CCCEEEEEEeCCCc-EEEEECC------------CcEEEEeCCCcceeeecC
Q 001123 219 KMNARLLDSDDGFGEVLSWQ-AH-----RGPVLSLCISSYGD-LWSGSEG------------GGIKIWPWEAIEKALSLK 279 (1149)
Q Consensus 219 dl~~g~~~~~~~~~~~~~l~-GH-----~~~VtsVafSpdG~-L~SGS~D------------gTIRVWdl~t~~~~~~l~ 279 (1149)
|+.++. ....+. +| ...+.+++|+|||+ |++++.| ++|.+||+++++.....
T Consensus 71 d~~t~~--------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~- 141 (349)
T 1jmx_B 71 DLDTCK--------NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV- 141 (349)
T ss_dssp ETTTTE--------EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS-
T ss_pred eCCCCc--------EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee-
Confidence 998764 233443 22 23478999999997 7777755 99999999774321100
Q ss_pred CCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEecCCceeeEEe
Q 001123 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVD 359 (1149)
Q Consensus 280 ~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~~~g~~~~~v~ 359 (1149)
... . ....+.++++++++. ++.++ ..|.+||+.+++.+..+......... .
T Consensus 142 ------~~~---------~-----------~~~~~~~~~~s~dg~-l~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~-~ 192 (349)
T 1jmx_B 142 ------RTF---------P-----------MPRQVYLMRAADDGS-LYVAG-PDIYKMDVKTGKYTVALPLRNWNRKG-Y 192 (349)
T ss_dssp ------EEE---------E-----------CCSSCCCEEECTTSC-EEEES-SSEEEECTTTCCEEEEECSTTCCCTT-B
T ss_pred ------eec---------c-----------CCCcccceeECCCCc-EEEcc-CcEEEEeCCCCceeccccccccCCcc-c
Confidence 000 0 001244566777776 55543 34999999999988877543200000 0
Q ss_pred eccCCCccccccceeeEEecCCCCc---cceeeeeecccc-----------ceEeecCCcEEEEeecccccCCCCceEEE
Q 001123 360 MSLLPDFAMEDEFKTKIVTSSKKDK---AQSSFGFFQRSR-----------NAIMGAADAVRRVAAKGGFGDDNRRTEAL 425 (1149)
Q Consensus 360 ~S~~~~~~~~~~~~~~~~s~~~k~~---~~~si~f~~~~~-----------~~i~G~~d~v~rv~~~g~~~~~~~~V~av 425 (1149)
.++ +... +|....... ....+.+.+++. .+......+..++.. +......+..+
T Consensus 193 ~~~--~~~~-------~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 260 (349)
T 1jmx_B 193 SAP--DVLY-------FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE---FADLTELYFTG 260 (349)
T ss_dssp CCC--BCCC-------CCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEE---EEECSSCEEEE
T ss_pred cCc--ccee-------eecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecc---cccCCCcceee
Confidence 000 0000 000000000 000111111100 000111111111111 11233456788
Q ss_pred EEcC-CCc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEE--ecCCEEEEeecCcEEEEEeCC-Cceeeeeecc
Q 001123 426 TTSI-DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH 497 (1149)
Q Consensus 426 a~s~-Dg~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls--~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH 497 (1149)
+++| ||. ++++ ++.|.+||+ +++.++.+..+ ..+.+++ ++|++|++++.++.|++||.+ ++.+..+..+
T Consensus 261 ~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 261 LRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 8999 987 5555 889999999 78887777643 2345554 478999998899999999986 6777666544
No 156
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.61 E-value=6.4e-15 Score=174.25 Aligned_cols=111 Identities=14% Similarity=0.006 Sum_probs=86.3
Q ss_pred CCCCceEEEEEcCC-Cc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCCCcee
Q 001123 417 DDNRRTEALTTSID-GM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLL 491 (1149)
Q Consensus 417 ~~~~~V~ava~s~D-g~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~G~~l 491 (1149)
+|...|.+++++|+ +. +++|+.||+|++||+ ++.++....+|...|+++++ +|++|++|+.||+|++||..++..
T Consensus 147 ~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~ 226 (434)
T 2oit_A 147 DAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEK 226 (434)
T ss_dssp SGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEE
T ss_pred CCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCccc
Confidence 45556778889887 54 789999999999999 67777777889999999976 699999999999999999887766
Q ss_pred eeeeccC-------CCeEEEEe--cCCeEEe-ecCCCc------eeeeeccC
Q 001123 492 GGWVAHS-------SPVIKMAV--GAGYIFT-LANHGG------IRGWNVTS 527 (1149)
Q Consensus 492 ~~l~gH~-------~~V~sLa~--Dg~~LaS-gS~Dgt------IRlWdl~s 527 (1149)
..+..|. ..|.++++ ++.++++ .+.||. +++|++..
T Consensus 227 ~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 227 KVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp EEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred ccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 6665543 37888885 4455543 334433 88999864
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.59 E-value=1.1e-14 Score=181.50 Aligned_cols=287 Identities=9% Similarity=-0.055 Sum_probs=172.5
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCC---CEEEEEEeCCCc-EEEEEC---------CC
Q 001123 196 CMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG---PVLSLCISSYGD-LWSGSE---------GG 262 (1149)
Q Consensus 196 ~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~---~VtsVafSpdG~-L~SGS~---------Dg 262 (1149)
.++|+|||++++++ .|++|++||+.++.+ ...+.+|.. .|.+++|||||+ |++++. |+
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~ 90 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQS--------YTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTA 90 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCE--------EEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcE--------EEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecce
Confidence 67899999766655 699999999998752 344555544 499999999998 777765 79
Q ss_pred cEEEEeCCCccee--eecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcC
Q 001123 263 GIKIWPWEAIEKA--LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDAR 340 (1149)
Q Consensus 263 TIRVWdl~t~~~~--~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~ 340 (1149)
+|++||+++++.. ..+. ..+..++++++|..|+.+.+++|++||+.
T Consensus 91 ~i~~~d~~~g~~~~~~~l~--------------------------------~~~~~~~~SPDG~~la~~~~~~i~~~~~~ 138 (719)
T 1z68_A 91 TYYIYDLSNGEFVRGNELP--------------------------------RPIQYLCWSPVGSKLAYVYQNNIYLKQRP 138 (719)
T ss_dssp EEEEEETTTTEECCSSCCC--------------------------------SSBCCEEECSSTTCEEEEETTEEEEESST
T ss_pred EEEEEECCCCccccceecC--------------------------------cccccceECCCCCEEEEEECCeEEEEeCC
Confidence 9999999876531 1010 22445678899999988888999999999
Q ss_pred CccEEEEEe-cCCc-ee----------------eEEeeccCCCcccccc---ceeeEEe----cCCCCccceeeeeeccc
Q 001123 341 TRELLKVFN-IDGQ-IE----------------NRVDMSLLPDFAMEDE---FKTKIVT----SSKKDKAQSSFGFFQRS 395 (1149)
Q Consensus 341 TG~~L~~l~-~~g~-~~----------------~~v~~S~~~~~~~~~~---~~~~~~s----~~~k~~~~~si~f~~~~ 395 (1149)
+|++.+... ++.. +. ..+.+|+++...+... ....++. ..........+.+...+
T Consensus 139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g 218 (719)
T 1z68_A 139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG 218 (719)
T ss_dssp TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence 998765331 1111 10 2455555554432100 0000000 00000000011110000
Q ss_pred cceEeecCCcEEEEeec--------------ccccCCCCceEEEEEcCCCcEEEE-eC--C--CeEEEEe----C-CCCe
Q 001123 396 RNAIMGAADAVRRVAAK--------------GGFGDDNRRTEALTTSIDGMIWTG-GA--N--GLLLQWD----P-NGNR 451 (1149)
Q Consensus 396 ~~~i~G~~d~v~rv~~~--------------g~~~~~~~~V~ava~s~Dg~laSg-s~--D--gtIrlWD----~-tG~~ 451 (1149)
.. .......+++. ..+.++...+..++++||++++.. .. + ..|.+|| . +|++
T Consensus 219 ~~----~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~ 294 (719)
T 1z68_A 219 AK----NPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC 294 (719)
T ss_dssp SC----CCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC
T ss_pred CC----CCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce
Confidence 00 00011222221 112356667889999999986533 22 2 2489999 8 6777
Q ss_pred eEee----ecCCccEE-----E--EEecCCEEEE--eecCc--EEEEEeCCCceeeeeeccCCCeEEEE-ecCCeEEeec
Q 001123 452 LQDF----QYLPFAVQ-----C--LCTFGSQIWV--GYMNG--IVQVLDLEGNLLGGWVAHSSPVIKMA-VGAGYIFTLA 515 (1149)
Q Consensus 452 l~tl----~gH~~~V~-----s--ls~dG~~LaS--Gs~DG--tIrlWD~~G~~l~~l~gH~~~V~sLa-~Dg~~LaSgS 515 (1149)
...+ .+|...|. + +++||+.|+. +..+| .|.+||+++.....+..|...|..+. .|++.|+..+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~d~~~i~~~~ 374 (719)
T 1z68_A 295 PKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRVTQDSLFYSS 374 (719)
T ss_dssp CGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEECSSEEEEEE
T ss_pred EEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEEeCCEEEEEE
Confidence 6666 46766654 3 4568986654 44444 68888887554667777776776654 3777776555
Q ss_pred C-----CCceeeeeccC
Q 001123 516 N-----HGGIRGWNVTS 527 (1149)
Q Consensus 516 ~-----DgtIRlWdl~s 527 (1149)
. ++++++|.+..
T Consensus 375 ~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 375 NEFEEYPGRRNIYRISI 391 (719)
T ss_dssp SCGGGCTTCBEEEEEEC
T ss_pred ecCCCCCceEEEEEEeC
Confidence 4 48899999864
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.59 E-value=2.4e-14 Score=178.45 Aligned_cols=324 Identities=7% Similarity=-0.048 Sum_probs=177.7
Q ss_pred EeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec--CCceEEEEEcCCCCEEEEEeC---------CCeE
Q 001123 147 AGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG--VSSVMCMVGDEASGVVWSGHR---------DGRI 215 (1149)
Q Consensus 147 ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G--~~~V~~lafs~dg~~LaSGS~---------DGtI 215 (1149)
++.|++|++||++++..... .. .+. ...|.+++|||||++|++++. |++|
T Consensus 32 ~~~d~~i~~~~~~~g~~~~~------------------~~-~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i 92 (719)
T 1z68_A 32 QSADNNIVLYNIETGQSYTI------------------LS-NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATY 92 (719)
T ss_dssp ECTTSCEEEEESSSCCEEEE------------------EC-HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred EcCCCCEEEEEcCCCcEEEE------------------Ec-cccccccceeeEEECCCCCeEEEEecCceeEEeecceEE
Confidence 45689999999988765432 10 110 124889999999999999987 8999
Q ss_pred EEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeecc
Q 001123 216 MCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSY 294 (1149)
Q Consensus 216 RvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~ 294 (1149)
++||+.++.+.. ...+ .+.|.+++|||||+ |++++ |++|++|++.+++.. .+.........
T Consensus 93 ~~~d~~~g~~~~------~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~-~l~~~~~~~~v------- 154 (719)
T 1z68_A 93 YIYDLSNGEFVR------GNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPF-QITFNGRENKI------- 154 (719)
T ss_dssp EEEETTTTEECC------SSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCE-ECCCCCBTTTE-------
T ss_pred EEEECCCCcccc------ceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcE-EEecCCCcCCe-------
Confidence 999999865200 0122 25689999999998 77775 889999999876543 22211100000
Q ss_pred ccccccc-cccceeeeecCCeEEEEEcCCCCEEEEecCC-----------------------------------ceEEEE
Q 001123 295 IDLRSHL-SVNGFSSILTSDIKNLLSDHSRAKVWSAGFL-----------------------------------SFALWD 338 (1149)
Q Consensus 295 ~~l~~~~-~~~g~~~~~~~dv~~las~~~~~~v~Sasd~-----------------------------------tIrLWD 338 (1149)
..++. ++..- -.......+++++++..|+.++.+ +|++||
T Consensus 155 --~~g~~~~v~~e--e~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d 230 (719)
T 1z68_A 155 --FNGIPDWVYEE--EMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIID 230 (719)
T ss_dssp --EESSCCHHHHH--HTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred --Ecccccceeee--ecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEE
Confidence 00000 00000 000111245566666666554311 678999
Q ss_pred cCCccEE---EE-----EecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEe
Q 001123 339 ARTRELL---KV-----FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVA 410 (1149)
Q Consensus 339 ~~TG~~L---~~-----l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~ 410 (1149)
+.+++++ .. +..+...+..+.+|++....+.. .. +... ...+...+.... ...+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~-------~~-~~~~-~~~l~~~d~~~~----~~~g~~--- 294 (719)
T 1z68_A 231 TTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQW-------LK-RVQN-VSVLSICDFRED----WQTWDC--- 294 (719)
T ss_dssp SSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEE-------EE-SSTT-EEEEEEEEECSS----SSSEEC---
T ss_pred CCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEE-------ec-cccC-eEEEEEEcccCC----CCCCce---
Confidence 9888753 21 22344445566666653222110 00 0000 000000000000 000000
Q ss_pred ecccc----cCCCCceE-----EEEEcCCCc-EE--EEeCCC--eEEEEeCCCCeeEeeecCCccEEEEE-ecCCEEEEe
Q 001123 411 AKGGF----GDDNRRTE-----ALTTSIDGM-IW--TGGANG--LLLQWDPNGNRLQDFQYLPFAVQCLC-TFGSQIWVG 475 (1149)
Q Consensus 411 ~~g~~----~~~~~~V~-----ava~s~Dg~-la--Sgs~Dg--tIrlWD~tG~~l~tl~gH~~~V~sls-~dG~~LaSG 475 (1149)
...+ .++...+. .++++|||. ++ ++..+| .|.+||+++...+.+..+...|..+. .+|++|+..
T Consensus 295 -~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~d~~~i~~~ 373 (719)
T 1z68_A 295 -PKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRVTQDSLFYS 373 (719)
T ss_dssp -CGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEECSSEEEEE
T ss_pred -EEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEEeCCEEEEE
Confidence 0011 13334444 678999987 43 344555 67888885544677777766666542 288888777
Q ss_pred ecC-----cEEEEEeCC---Cce-eee----eeccCCCeEEEE--ecCCeEE-eecCC--CceeeeeccCC
Q 001123 476 YMN-----GIVQVLDLE---GNL-LGG----WVAHSSPVIKMA--VGAGYIF-TLANH--GGIRGWNVTSP 528 (1149)
Q Consensus 476 s~D-----GtIrlWD~~---G~~-l~~----l~gH~~~V~sLa--~Dg~~La-SgS~D--gtIRlWdl~sp 528 (1149)
+.+ +.++||.++ |.. ... +.+|...+..++ +|+++++ +++.+ .++++||+.+.
T Consensus 374 ~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g 444 (719)
T 1z68_A 374 SNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTD 444 (719)
T ss_dssp ESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSC
T ss_pred EecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCC
Confidence 665 889999853 321 233 334777777765 5777666 45544 46888987553
No 159
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.59 E-value=8e-14 Score=155.69 Aligned_cols=263 Identities=10% Similarity=-0.013 Sum_probs=147.1
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCC-CCEEEEEEeCCCc-E-EEEECCCcEEEEeCCCcc
Q 001123 197 MVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIE 273 (1149)
Q Consensus 197 lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~-~~VtsVafSpdG~-L-~SGS~DgTIRVWdl~t~~ 273 (1149)
+++++++.++++++.|++|++||+.++. ...++..+. ..+.+++|+|+|+ + ++++.+++|.+||+.+++
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~--------~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~ 76 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDT--------VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK 76 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTE--------EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCc--------EEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc
Confidence 4678889999999999999999998864 244555443 2578899999997 5 466689999999998765
Q ss_pred eeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-------------CCceEEEEcC
Q 001123 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-------------FLSFALWDAR 340 (1149)
Q Consensus 274 ~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-------------d~tIrLWD~~ 340 (1149)
....+...... .. ....+..+++++++..++.++ .+.|.+||+.
T Consensus 77 ~~~~~~~~~~~-----------~~------------~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~ 133 (349)
T 1jmx_B 77 NTFHANLSSVP-----------GE------------VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA 133 (349)
T ss_dssp EEEEEESCCST-----------TE------------EEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGG
T ss_pred EEEEEEccccc-----------cc------------ccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECC
Confidence 43322110000 00 001133456677777776655 3789999998
Q ss_pred CccEE---EEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEee-cc---
Q 001123 341 TRELL---KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-KG--- 413 (1149)
Q Consensus 341 TG~~L---~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~-~g--- 413 (1149)
+++.. ..+..... +..+.|.++++ ++.+..+ +..+.. .+
T Consensus 134 ~~~~~~~~~~~~~~~~--------------------------------~~~~~~s~dg~-l~~~~~~-i~~~d~~~~~~~ 179 (349)
T 1jmx_B 134 DGLEAKPVRTFPMPRQ--------------------------------VYLMRAADDGS-LYVAGPD-IYKMDVKTGKYT 179 (349)
T ss_dssp GGGGBCCSEEEECCSS--------------------------------CCCEEECTTSC-EEEESSS-EEEECTTTCCEE
T ss_pred CccccceeeeccCCCc--------------------------------ccceeECCCCc-EEEccCc-EEEEeCCCCcee
Confidence 86532 22222111 11223344443 3332221 222211 00
Q ss_pred -cccCCC--C----------------------ceEEEEEcCCCcE--EEEeCCCeEEEEeC-CCCe-eEeeecCCccEEE
Q 001123 414 -GFGDDN--R----------------------RTEALTTSIDGMI--WTGGANGLLLQWDP-NGNR-LQDFQYLPFAVQC 464 (1149)
Q Consensus 414 -~~~~~~--~----------------------~V~ava~s~Dg~l--aSgs~DgtIrlWD~-tG~~-l~tl~gH~~~V~s 464 (1149)
.+.... . ....+++++|+.. ........+..+|. +++. +..+..+...+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (349)
T 1jmx_B 180 VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFT 259 (349)
T ss_dssp EEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEE
T ss_pred ccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCccee
Confidence 011110 0 1223344433310 00000111222444 2321 1122223334444
Q ss_pred E--Ee-cCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEEEE--ecCCeEEeecCCCceeeeeccC
Q 001123 465 L--CT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 465 l--s~-dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
+ ++ +|++|+++ ++.|++||++ ++.+..+..+ ..+.+++ +||++|++++.+++|++||+.+
T Consensus 260 ~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 260 GLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 325 (349)
T ss_dssp EEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred eEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccc
Confidence 4 46 89999998 8899999986 6776666533 3455666 6889999888999999999764
No 160
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.59 E-value=3.6e-13 Score=150.26 Aligned_cols=222 Identities=9% Similarity=0.005 Sum_probs=147.0
Q ss_pred EEcCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEE-CCCcEEEEeCCCcce
Q 001123 198 VGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGIKIWPWEAIEK 274 (1149)
Q Consensus 198 afs~d-g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS-~DgTIRVWdl~t~~~ 274 (1149)
.|+++ +.++++++.|++|++||+.++. ....+..+...+ +++|+|+|+ |+.++ .+++|++||+++++.
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~--------~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~ 74 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLE--------ILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP 74 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCC--------EEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccc--------eeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce
Confidence 34554 4558899999999999999875 244555566667 999999997 66555 489999999987653
Q ss_pred -eeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEE-EEEcCCCCEEEEecCC----ceEEEEcCCccEEEEE
Q 001123 275 -ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKN-LLSDHSRAKVWSAGFL----SFALWDARTRELLKVF 348 (1149)
Q Consensus 275 -~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~-las~~~~~~v~Sasd~----tIrLWD~~TG~~L~~l 348 (1149)
...+.. ...... +++++++..++++... +|.+||+.+++.+..+
T Consensus 75 ~~~~~~~------------------------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~ 124 (331)
T 3u4y_A 75 KVVAIQE------------------------------GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTI 124 (331)
T ss_dssp EEEEEEE------------------------------CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEE
T ss_pred eEEeccc------------------------------CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEE
Confidence 111100 011223 5677888877755444 8999999998876654
Q ss_pred ecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEc
Q 001123 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (1149)
Q Consensus 349 ~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s 428 (1149)
.... ....++++
T Consensus 125 ~~~~--------------------------------------------------------------------~~~~~~~s 136 (331)
T 3u4y_A 125 PIPY--------------------------------------------------------------------DAVGIAIS 136 (331)
T ss_dssp ECCT--------------------------------------------------------------------TEEEEEEC
T ss_pred ECCC--------------------------------------------------------------------CccceEEC
Confidence 3211 12356688
Q ss_pred CCCc-EEE-EeCCCe-EEEEeCC--CCee---EeeecCCccEEEEE--ecCCEEEEee-cCcEEEEEeCC-Cce---eee
Q 001123 429 IDGM-IWT-GGANGL-LLQWDPN--GNRL---QDFQYLPFAVQCLC--TFGSQIWVGY-MNGIVQVLDLE-GNL---LGG 493 (1149)
Q Consensus 429 ~Dg~-laS-gs~Dgt-IrlWD~t--G~~l---~tl~gH~~~V~sls--~dG~~LaSGs-~DGtIrlWD~~-G~~---l~~ 493 (1149)
|||. +++ +..++. |.+|+++ |... .....+......++ ++|++|++++ .+++|++||++ ++. +..
T Consensus 137 pdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~ 216 (331)
T 3u4y_A 137 PNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNA 216 (331)
T ss_dssp TTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEE
T ss_pred CCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeee
Confidence 9986 654 455578 9999993 3332 11112334456665 4788766555 68999999986 777 777
Q ss_pred eeccCCCeEEEE--ecCCeEEee-cCCCceeeeeccC
Q 001123 494 WVAHSSPVIKMA--VGAGYIFTL-ANHGGIRGWNVTS 527 (1149)
Q Consensus 494 l~gH~~~V~sLa--~Dg~~LaSg-S~DgtIRlWdl~s 527 (1149)
+..+ ..+..++ +||++++.+ ..++.|.+||+.+
T Consensus 217 ~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~ 252 (331)
T 3u4y_A 217 VGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS 252 (331)
T ss_dssp EECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTT
T ss_pred ccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCC
Confidence 7655 4555565 689977654 4688999999754
No 161
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.57 E-value=2.7e-13 Score=154.71 Aligned_cols=272 Identities=11% Similarity=0.041 Sum_probs=158.0
Q ss_pred EEEcCCCCEEEEEeC-CCe--EEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCc
Q 001123 197 MVGDEASGVVWSGHR-DGR--IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAI 272 (1149)
Q Consensus 197 lafs~dg~~LaSGS~-DGt--IRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~ 272 (1149)
.+|||||+.|+.++. ||. |.+||+.++. ......+|...+.+++|||||+ |+.++.|++|++||+.++
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~--------~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g 112 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV--------ATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATL 112 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCE--------EEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCc--------eEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 689999999999887 774 7788888764 2333456777777789999997 889999999999999887
Q ss_pred ceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEE----------------------e-
Q 001123 273 EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS----------------------A- 329 (1149)
Q Consensus 273 ~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~S----------------------a- 329 (1149)
+.............. .....++++..++. .
T Consensus 113 ~~~~~~~~~~~~~~~---------------------------~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T 3pe7_A 113 EENVVYQVPAEWVGY---------------------------GTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTK 165 (388)
T ss_dssp CEEEEEECCTTEEEE---------------------------EEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred cceeeeechhhcccc---------------------------cceeECCCCCeeccccccCcccccccccchhhhhhccC
Confidence 643322111111000 00111233333321 1
Q ss_pred cCCceEEEEcCCccEEEEEecCCceeeEEeecc-CCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEE
Q 001123 330 GFLSFALWDARTRELLKVFNIDGQIENRVDMSL-LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRR 408 (1149)
Q Consensus 330 sd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~-~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~r 408 (1149)
.+..|.+||+.+|+......... .+..+.+++ .+...+- ......+... ..+..
T Consensus 166 ~~~~l~~~d~~~g~~~~l~~~~~-~~~~~~~sp~dg~~l~~-------~~~~~~~~~~-----------------~~l~~ 220 (388)
T 3pe7_A 166 PCCRLMRVDLKTGESTVILQENQ-WLGHPIYRPYDDSTVAF-------CHEGPHDLVD-----------------ARMWL 220 (388)
T ss_dssp CCEEEEEEETTTCCEEEEEEESS-CEEEEEEETTEEEEEEE-------EECSCTTTSS-----------------CSEEE
T ss_pred CcceEEEEECCCCceEEeecCCc-cccccEECCCCCCEEEE-------EEecCCCCCc-----------------ceEEE
Confidence 12468999999998765554333 334455555 3332211 0000000000 01111
Q ss_pred Eeec----ccccCCC--CceEEEEEcCCCc-EEEEeC-C----CeEEEEeC-CCCe--eEeeecCCccE-----EEEEec
Q 001123 409 VAAK----GGFGDDN--RRTEALTTSIDGM-IWTGGA-N----GLLLQWDP-NGNR--LQDFQYLPFAV-----QCLCTF 468 (1149)
Q Consensus 409 v~~~----g~~~~~~--~~V~ava~s~Dg~-laSgs~-D----gtIrlWD~-tG~~--l~tl~gH~~~V-----~sls~d 468 (1149)
+... ..+..+. ..+..++++|||+ |+..+. + ..|.+||+ +|+. +..+.++.... ..+++|
T Consensus 221 ~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spd 300 (388)
T 3pe7_A 221 INEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGD 300 (388)
T ss_dssp EETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEE
T ss_pred EeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccC
Confidence 1100 0122222 2466778999997 654332 2 24999999 6653 33443311111 157889
Q ss_pred CCEEEEe---------ecCcEEEEEeCCCceeeeeeccCC-----------CeEEEE--ecCCeEEeec-CCCceeeeec
Q 001123 469 GSQIWVG---------YMNGIVQVLDLEGNLLGGWVAHSS-----------PVIKMA--VGAGYIFTLA-NHGGIRGWNV 525 (1149)
Q Consensus 469 G~~LaSG---------s~DGtIrlWD~~G~~l~~l~gH~~-----------~V~sLa--~Dg~~LaSgS-~DgtIRlWdl 525 (1149)
|++|+.. ..+..|++||+++..+..+..|.. .+.+++ +||+.|+.+| .++...+|.+
T Consensus 301 g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 301 GSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp ECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 9988854 456799999998666677777776 455554 6998887655 5888889987
Q ss_pred cCC
Q 001123 526 TSP 528 (1149)
Q Consensus 526 ~sp 528 (1149)
..+
T Consensus 381 ~l~ 383 (388)
T 3pe7_A 381 TLP 383 (388)
T ss_dssp ECC
T ss_pred ECC
Confidence 543
No 162
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.55 E-value=3.8e-12 Score=139.63 Aligned_cols=236 Identities=8% Similarity=0.113 Sum_probs=162.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEee------cCCCCEEEEEE-eCCCcEEEEEC--C
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ------AHRGPVLSLCI-SSYGDLWSGSE--G 261 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~------GH~~~VtsVaf-SpdG~L~SGS~--D 261 (1149)
...+.+++++++|.++++.+.++.|++||..+.. ...+. +|...+.++++ .++|+|+.+.. +
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~---------~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~ 99 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF---------KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT 99 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE---------EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG
T ss_pred cCCCceEEECCCCCEEEEECCCCEEEEECCCCcE---------EEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCC
Confidence 3467889999999999999999999999987422 33332 45678999999 57888765543 8
Q ss_pred CcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcC
Q 001123 262 GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDAR 340 (1149)
Q Consensus 262 gTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~ 340 (1149)
+.|++||. +++....+... .......+++++++..+++.. ++.|.+||..
T Consensus 100 ~~i~~~d~-~g~~~~~~~~~----------------------------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 150 (286)
T 1q7f_A 100 HQIQIYNQ-YGQFVRKFGAT----------------------------ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN 150 (286)
T ss_dssp CEEEEECT-TSCEEEEECTT----------------------------TCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred CEEEEECC-CCcEEEEecCc----------------------------cCCCceEEEEeCCCCEEEEECCCCEEEEEcCC
Confidence 99999995 33322111100 002345667777766544433 4678899853
Q ss_pred CccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCC
Q 001123 341 TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR 420 (1149)
Q Consensus 341 TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~ 420 (1149)
|+.+..+... .+..
T Consensus 151 -g~~~~~~~~~-----------------------------------------------------------------~~~~ 164 (286)
T 1q7f_A 151 -GNVLHKFGCS-----------------------------------------------------------------KHLE 164 (286)
T ss_dssp -SCEEEEEECT-----------------------------------------------------------------TTCS
T ss_pred -CCEEEEeCCC-----------------------------------------------------------------CccC
Confidence 4443333110 1112
Q ss_pred ceEEEEEcCCCcEEEE-eCCCeEEEEeCCCCeeEeeecC--CccEEEEEe--cCCEEEEeecCc-EEEEEeCCCceeeee
Q 001123 421 RTEALTTSIDGMIWTG-GANGLLLQWDPNGNRLQDFQYL--PFAVQCLCT--FGSQIWVGYMNG-IVQVLDLEGNLLGGW 494 (1149)
Q Consensus 421 ~V~ava~s~Dg~laSg-s~DgtIrlWD~tG~~l~tl~gH--~~~V~sls~--dG~~LaSGs~DG-tIrlWD~~G~~l~~l 494 (1149)
.+..++++++|.++.+ +.++.|++||.+|+.+.++..+ ...+..+++ +|+.+++...++ .|++||.+|+.+..+
T Consensus 165 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~ 244 (286)
T 1q7f_A 165 FPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISAL 244 (286)
T ss_dssp SEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEE
T ss_pred CcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEE
Confidence 3456778899887654 5689999999999888887654 356777876 577777777775 999999989888888
Q ss_pred eccCC--CeEEEE--ecCCeEEeecCCCceeeeeccCCCCC
Q 001123 495 VAHSS--PVIKMA--VGAGYIFTLANHGGIRGWNVTSPGPL 531 (1149)
Q Consensus 495 ~gH~~--~V~sLa--~Dg~~LaSgS~DgtIRlWdl~sp~pl 531 (1149)
..|.. .+.+++ ++|+++++ +.|++|++|+.....|+
T Consensus 245 ~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~pv 284 (286)
T 1q7f_A 245 ESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAPV 284 (286)
T ss_dssp EESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCCT
T ss_pred cccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccccc
Confidence 77654 366776 57877776 67999999998765553
No 163
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.55 E-value=1.6e-12 Score=147.66 Aligned_cols=254 Identities=9% Similarity=0.080 Sum_probs=153.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCC----CeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEE-CCCcE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRD----GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGI 264 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~D----GtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS-~DgTI 264 (1149)
...+..++|+|||++|++++.| +.|++|+++.... .+..+.....|......+++ +|+ |++++ .|++|
T Consensus 49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g----~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v 122 (361)
T 3scy_A 49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG----TLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSI 122 (361)
T ss_dssp CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT----EEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEE
T ss_pred CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC----cEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEE
Confidence 4556679999999999999986 8999999875210 01223334446667778888 676 66555 68999
Q ss_pred EEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec--CCceEEEEcCCc
Q 001123 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTR 342 (1149)
Q Consensus 265 RVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas--d~tIrLWD~~TG 342 (1149)
.+|++.+......+.. ... ..+..... .......+..+++++++..++.+. ++.|++|++...
T Consensus 123 ~~~~~~~~g~~~~~~~---~~~----------~~g~~~~~--~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~ 187 (361)
T 3scy_A 123 TVFPIGQDGALLPASD---VIE----------FKGSGPDK--ERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPN 187 (361)
T ss_dssp EEEEBCTTSCBCSCSE---EEE----------CCCCCSCT--TTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred EEEEeCCCCcCcccce---eEE----------ccCCCCCc--cccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCC
Confidence 9999975322111100 000 00000000 000112356688889888665543 578999987643
Q ss_pred cE------EEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeeccccc
Q 001123 343 EL------LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFG 416 (1149)
Q Consensus 343 ~~------L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~ 416 (1149)
.. +... +.. ... ..
T Consensus 188 ~~~~~~~~l~~~---~~~--------------------~~~-------------------------------------~~ 207 (361)
T 3scy_A 188 ANADNKEKFLTK---GTP--------------------EAF-------------------------------------KV 207 (361)
T ss_dssp CCTTTCCCCEEE---EEE--------------------EEE-------------------------------------EC
T ss_pred CCcccccceeec---ccc--------------------cce-------------------------------------ec
Confidence 21 1000 000 000 00
Q ss_pred CCCCceEEEEEcCCCc-EEEEe-CCCeEEEEeC-CCCe--eEeeec---CCccEEEEE--ecCCEEEEeecC--cEEEEE
Q 001123 417 DDNRRTEALTTSIDGM-IWTGG-ANGLLLQWDP-NGNR--LQDFQY---LPFAVQCLC--TFGSQIWVGYMN--GIVQVL 484 (1149)
Q Consensus 417 ~~~~~V~ava~s~Dg~-laSgs-~DgtIrlWD~-tG~~--l~tl~g---H~~~V~sls--~dG~~LaSGs~D--GtIrlW 484 (1149)
........++++|||+ +++++ .+++|.+||+ +|+. ++.+.. +......++ +||++|+++..+ ++|++|
T Consensus 208 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~ 287 (361)
T 3scy_A 208 APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIF 287 (361)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEE
T ss_pred CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEE
Confidence 1112245678999997 66666 5899999999 6643 343332 334456664 589999777654 899999
Q ss_pred eCC---Cc--eeeeeeccCCCeEEEE--ecCCeEEeec-CCCceeeeecc
Q 001123 485 DLE---GN--LLGGWVAHSSPVIKMA--VGAGYIFTLA-NHGGIRGWNVT 526 (1149)
Q Consensus 485 D~~---G~--~l~~l~gH~~~V~sLa--~Dg~~LaSgS-~DgtIRlWdl~ 526 (1149)
+++ |+ .+..+.. ...+.+++ +||++|++++ .+++|++|.+.
T Consensus 288 ~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 288 KVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred EEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 974 55 3444444 44566666 6899888876 67999998764
No 164
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.55 E-value=3e-13 Score=150.00 Aligned_cols=242 Identities=12% Similarity=0.027 Sum_probs=145.2
Q ss_pred CCeEEE-e-CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCcee-eeecCCceEEEEEcCCCCEEEEEe--------
Q 001123 142 EEQLWA-G-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKE-SVKGVSSVMCMVGDEASGVVWSGH-------- 210 (1149)
Q Consensus 142 ~~~l~a-g-~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~-s~~G~~~V~~lafs~dg~~LaSGS-------- 210 (1149)
++.+++ + .++.|.+||++++...... +... ..+ ...+.+++|+|+|+.|+.++
T Consensus 45 g~~l~v~~~~~~~v~~~d~~~~~~~~~~---------------~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 108 (337)
T 1pby_B 45 GRIAYATVNKSESLVKIDLVTGETLGRI---------------DLSTPEER-VKSLFGAALSPDGKTLAIYESPVRLELT 108 (337)
T ss_dssp SSEEEEEETTTTEEEEEETTTCCEEEEE---------------ECCBTTEE-EECTTCEEECTTSSEEEEEEEEEEECSS
T ss_pred CCEEEEEeCCCCeEEEEECCCCCeEeeE---------------EcCCcccc-cccccceEECCCCCEEEEEecccccccc
Confidence 445654 3 3678999999887654320 0000 001 12456789999999999886
Q ss_pred ----CCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCccee
Q 001123 211 ----RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (1149)
Q Consensus 211 ----~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~ 285 (1149)
.|+.|++||+.++. ....+.. ...+.+++|+|||+ |+.+ ++.|++||+.+++....+......
T Consensus 109 ~~~~~~~~i~v~d~~~~~--------~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~- 176 (337)
T 1pby_B 109 HFEVQPTRVALYDAETLS--------RRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE- 176 (337)
T ss_dssp CEEECCCEEEEEETTTTE--------EEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-
T ss_pred cccccCceEEEEECCCCc--------EEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-
Confidence 68999999998754 2344443 45678899999998 7766 689999999887644332211100
Q ss_pred eEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEE---EEec--CC----------ceEEEEcCCccEEEEEec
Q 001123 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKV---WSAG--FL----------SFALWDARTRELLKVFNI 350 (1149)
Q Consensus 286 ~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v---~Sas--d~----------tIrLWD~~TG~~L~~l~~ 350 (1149)
......+.+....+ ....+..+ +... .+ .|.+||+.++++. .+.
T Consensus 177 ------------------~~~~~s~dg~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~- 235 (337)
T 1pby_B 177 ------------------AETYAQPDVLAVWN-QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MRE- 235 (337)
T ss_dssp ------------------TTTBCCCBCCCCCC-CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEE-
T ss_pred ------------------CCceeCCCccEEee-eccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eee-
Confidence 00000011110000 00011110 0000 00 3566676665543 111
Q ss_pred CCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCC
Q 001123 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID 430 (1149)
Q Consensus 351 ~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~D 430 (1149)
+..+...+..++++||
T Consensus 236 ----------------------------------------------------------------~~~~~~~~~~~~~s~d 251 (337)
T 1pby_B 236 ----------------------------------------------------------------VRIMDVFYFSTAVNPA 251 (337)
T ss_dssp ----------------------------------------------------------------EEECSSCEEEEEECTT
T ss_pred ----------------------------------------------------------------cCCCCCceeeEEECCC
Confidence 0011123456778999
Q ss_pred Cc-EEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEE--ecCCEEEEeecCcEEEEEeCC-CceeeeeeccCC
Q 001123 431 GM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSS 499 (1149)
Q Consensus 431 g~-laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls--~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~ 499 (1149)
|. ++++ ++.|.+||+ +++.+..+..+ ..+.+++ ++|++|++++.++.|++||++ ++.+..+..+.+
T Consensus 252 g~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 252 KTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp SSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred CCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCCC
Confidence 87 5555 799999999 67887777654 3455565 479999999999999999986 777777765543
No 165
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.52 E-value=1.5e-13 Score=162.63 Aligned_cols=176 Identities=11% Similarity=0.023 Sum_probs=114.7
Q ss_pred EEEeeCCeEEEeCCCCEEEEeCCCCCCCCccccccccCCCCCCC-CCCceeeeecCCceEEEEEcCCCCEEE----EEeC
Q 001123 137 TIVCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDG-TAPFKESVKGVSSVMCMVGDEASGVVW----SGHR 211 (1149)
Q Consensus 137 ~l~~~~~~l~ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~-~~~~~~s~~G~~~V~~lafs~dg~~La----SGS~ 211 (1149)
.+....+.++++...+++||+......... .+....+.. ..+. ..+...+.|.+++|+++|++|+ ||+.
T Consensus 43 avs~~~~~l~~~~~dgv~v~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~v~~l~~spdg~~lav~~~sgs~ 116 (434)
T 2oit_A 43 AVSNKYGLVFAGGASGLQIFPTKNLLIQNK-----PGDDPNKIVDKVQG-LLVPMKFPIHHLALSCDNLTLSACMMSSEY 116 (434)
T ss_dssp EEETTTTEEEEEETTEEEEEEHHHHCCCCC-----TTCCTTCEEECCCC-EEECCSSCEEEEEECTTSCEEEEEEEETTT
T ss_pred EEecCCCEEEEECCCEEEEEEchHhhhhcc-----cccCcccccccCcc-ccccCCCcccEEEEcCCCCEEEEEEeccCC
Confidence 444457777776645599998754322110 000000000 0000 0111146799999999999999 9999
Q ss_pred CCeEEEEECCCCCC---CCCCCccceEEeecCCCCEEEEEEeCC-Cc-EEEEECCCcEEEEeCCCcceeeecCCCcceee
Q 001123 212 DGRIMCWKMNARLL---DSDDGFGEVLSWQAHRGPVLSLCISSY-GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (1149)
Q Consensus 212 DGtIRvWdl~~g~~---~~~~~~~~~~~l~GH~~~VtsVafSpd-G~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~ 286 (1149)
|++|++||+.++.. ...+++.....+.||.+.|++|+|+|+ +. |+|||.||+|++||+.++.......
T Consensus 117 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~------- 189 (434)
T 2oit_A 117 GSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL------- 189 (434)
T ss_dssp EEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE-------
T ss_pred CceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc-------
Confidence 99999999865410 000122234567899999999999998 55 7899999999999997653221110
Q ss_pred EEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEE
Q 001123 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (1149)
Q Consensus 287 a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l 348 (1149)
+| ...+.++++++++..+++++ |++|++||++ ++...++
T Consensus 190 ------------~~----------~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~ 229 (434)
T 2oit_A 190 ------------PS----------TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVI 229 (434)
T ss_dssp ------------CG----------GGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEE
T ss_pred ------------CC----------CCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccccc
Confidence 11 24678889999888888765 6789999998 6555544
No 166
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.51 E-value=1.3e-12 Score=145.15 Aligned_cols=220 Identities=13% Similarity=0.150 Sum_probs=139.8
Q ss_pred CEEEEEeCCCeEEEEECCC-CCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECC-CcEEEEeCC--Ccceeeec
Q 001123 204 GVVWSGHRDGRIMCWKMNA-RLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG-GGIKIWPWE--AIEKALSL 278 (1149)
Q Consensus 204 ~~LaSGS~DGtIRvWdl~~-g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~D-gTIRVWdl~--t~~~~~~l 278 (1149)
.++++++.|+.|++|+++. +.. . ......|.+.+.+++|+|+|+ |++++.+ ++|++|++. ++....
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~-- 76 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGAL------T-LTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF-- 76 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCE------E-EEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE--
T ss_pred EEEEeCCCCCeEEEEEECCCCcE------E-EeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceee--
Confidence 3456668899999999963 221 1 223346888999999999998 7777776 999999986 332110
Q ss_pred CCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec--CCceEEEEcCCcc---EEEEEecCCc
Q 001123 279 KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRE---LLKVFNIDGQ 353 (1149)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas--d~tIrLWD~~TG~---~L~~l~~~g~ 353 (1149)
...+ . ....+..+++++++..++.++ ++.|.+||+.+|. .+..+..
T Consensus 77 ------~~~~---------~-----------~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--- 127 (343)
T 1ri6_A 77 ------AAES---------A-----------LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG--- 127 (343)
T ss_dssp ------EEEE---------E-----------CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC---
T ss_pred ------cccc---------c-----------cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC---
Confidence 0000 0 012345677788888776553 5679999984332 1111110
Q ss_pred eeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-
Q 001123 354 IENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM- 432 (1149)
Q Consensus 354 ~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~- 432 (1149)
...+.+++++|||.
T Consensus 128 -----------------------------------------------------------------~~~~~~~~~s~dg~~ 142 (343)
T 1ri6_A 128 -----------------------------------------------------------------LDGCHSANISPDNRT 142 (343)
T ss_dssp -----------------------------------------------------------------CTTBCCCEECTTSSE
T ss_pred -----------------------------------------------------------------CCCceEEEECCCCCE
Confidence 01133456888886
Q ss_pred EEEEe-CCCeEEEEeC-C-CCeeE----eeecC-CccEEEEEe--cCCEEEEee-cCcEEEEEeCC---Cce--eeeee-
Q 001123 433 IWTGG-ANGLLLQWDP-N-GNRLQ----DFQYL-PFAVQCLCT--FGSQIWVGY-MNGIVQVLDLE---GNL--LGGWV- 495 (1149)
Q Consensus 433 laSgs-~DgtIrlWD~-t-G~~l~----tl~gH-~~~V~sls~--dG~~LaSGs-~DGtIrlWD~~---G~~--l~~l~- 495 (1149)
+++++ .|++|++||+ + |+... .+..+ ...+..+++ +|++|++++ .++.|++||++ |+. +....
T Consensus 143 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~ 222 (343)
T 1ri6_A 143 LWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDM 222 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEEC
T ss_pred EEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccc
Confidence 66666 8999999999 4 65432 23332 346666655 688776555 88999999974 332 22222
Q ss_pred ---cc--CCCeEEEE--ecCCeEE-eecCCCceeeeecc
Q 001123 496 ---AH--SSPVIKMA--VGAGYIF-TLANHGGIRGWNVT 526 (1149)
Q Consensus 496 ---gH--~~~V~sLa--~Dg~~La-SgS~DgtIRlWdl~ 526 (1149)
+| ...+..++ +||++|+ +.+.|+.|++|++.
T Consensus 223 ~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 223 MPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp SCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred cCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 22 22455565 5888777 66689999999985
No 167
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.49 E-value=1.8e-12 Score=148.51 Aligned_cols=239 Identities=9% Similarity=0.030 Sum_probs=150.0
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECC-CCCCCCCCCccceEEeecCCCCEEEEEEeCCCc---EEEEE--------
Q 001123 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMN-ARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD---LWSGS-------- 259 (1149)
Q Consensus 192 ~~V~~lafs~dg~~LaSGS~DGtIRvWdl~-~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~---L~SGS-------- 259 (1149)
..+..++|+|||++|++++.+ +|++|++. ++.+ ........+ +.+.+++|+|||+ +++++
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~------~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~ 111 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI------VHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYA 111 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE------EEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEE
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE------EEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceecc
Confidence 356789999999999999998 99999986 5431 111111111 3356789999998 34553
Q ss_pred -----CCCcEEEEeCCC-cceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec--C
Q 001123 260 -----EGGGIKIWPWEA-IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--F 331 (1149)
Q Consensus 260 -----~DgTIRVWdl~t-~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas--d 331 (1149)
.|+++++|++.. ++....+. .+ .+. ....+..+++++++..++.+. +
T Consensus 112 ~~~~~~~g~v~v~~~~~~g~~~~~~~-------~~----------~~~--------~~~~~~~~~~spdG~~l~~~~~~~ 166 (365)
T 1jof_A 112 NPFYKFAGYGNVFSVSETGKLEKNVQ-------NY----------EYQ--------ENTGIHGMVFDPTETYLYSADLTA 166 (365)
T ss_dssp EEESSSCCEEEEEEECTTCCEEEEEE-------EE----------ECC--------TTCCEEEEEECTTSSEEEEEETTT
T ss_pred ceeecCCceEEEEccCCCCcCcceEe-------eE----------EeC--------CCCcceEEEECCCCCEEEEEcCCC
Confidence 799999999963 33211110 00 000 013456778888888777653 4
Q ss_pred CceEEEEcC-CccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEe
Q 001123 332 LSFALWDAR-TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVA 410 (1149)
Q Consensus 332 ~tIrLWD~~-TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~ 410 (1149)
++|++||+. +|++...-. +.
T Consensus 167 ~~v~~~~~~~~g~~~~~~~---------------------------~~-------------------------------- 187 (365)
T 1jof_A 167 NKLWTHRKLASGEVELVGS---------------------------VD-------------------------------- 187 (365)
T ss_dssp TEEEEEEECTTSCEEEEEE---------------------------EE--------------------------------
T ss_pred CEEEEEEECCCCCEEEeee---------------------------Ee--------------------------------
Confidence 689999987 676422100 00
Q ss_pred ecccccCCCCceEEEEEcCCCc-EEEEeC-CCeEEEEeC---CCCee---Ee---ee----cCCc------cEEEEE---
Q 001123 411 AKGGFGDDNRRTEALTTSIDGM-IWTGGA-NGLLLQWDP---NGNRL---QD---FQ----YLPF------AVQCLC--- 466 (1149)
Q Consensus 411 ~~g~~~~~~~~V~ava~s~Dg~-laSgs~-DgtIrlWD~---tG~~l---~t---l~----gH~~------~V~sls--- 466 (1149)
+..+...+..++++|||+ +++++. +++|.+|+. +|+.. +. +. +|.. .+..++
T Consensus 188 ----~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~s 263 (365)
T 1jof_A 188 ----APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALT 263 (365)
T ss_dssp ----CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEEC
T ss_pred ----cCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEEC
Confidence 000112345677999996 666664 789999976 46642 22 22 2232 466555
Q ss_pred ecCCEEEEeecCc------EEEEEeCC--Cceee---eeeccCCCeEE--EEe---cCCeEEeecCC-Cceeeeecc
Q 001123 467 TFGSQIWVGYMNG------IVQVLDLE--GNLLG---GWVAHSSPVIK--MAV---GAGYIFTLANH-GGIRGWNVT 526 (1149)
Q Consensus 467 ~dG~~LaSGs~DG------tIrlWD~~--G~~l~---~l~gH~~~V~s--La~---Dg~~LaSgS~D-gtIRlWdl~ 526 (1149)
+||++|++++.+. +|++||++ |++.. ....|...+.. +.+ ||++|++++.+ ++|++|++.
T Consensus 264 pdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 264 FSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp TTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred CCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence 5799998877543 89999973 66543 23334444444 447 79999998764 899999975
No 168
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.47 E-value=7.6e-12 Score=141.02 Aligned_cols=234 Identities=13% Similarity=0.070 Sum_probs=144.5
Q ss_pred CeEEEeC----CCCEEEEeCCCCCCCCccccccccCCCCCCCCCCcee-eeecCCceEEEEEcCCCCEEEEEe-CCCeEE
Q 001123 143 EQLWAGG----ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKE-SVKGVSSVMCMVGDEASGVVWSGH-RDGRIM 216 (1149)
Q Consensus 143 ~~l~ag~----D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~-s~~G~~~V~~lafs~dg~~LaSGS-~DGtIR 216 (1149)
+++++.. +++|++||++++..... .. ..+ ...+..++|+|||++|++++ .|++|+
T Consensus 51 g~l~~~~~~~~~~~v~~~~~~~g~~~~~------------------~~~~~~-~~~p~~~a~spdg~~l~~~~~~~~~v~ 111 (347)
T 3hfq_A 51 DCLYSVDKEDDEGGIAAWQIDGQTAHKL------------------NTVVAP-GTPPAYVAVDEARQLVYSANYHKGTAE 111 (347)
T ss_dssp CEEEEEEEETTEEEEEEEEEETTEEEEE------------------EEEEEE-SCCCSEEEEETTTTEEEEEETTTTEEE
T ss_pred CeEEEEEecCCCceEEEEEecCCcEEEe------------------eeeecC-CCCCEEEEECCCCCEEEEEeCCCCEEE
Confidence 4466532 57899999975542111 11 112 45677899999999888888 789999
Q ss_pred EEECCC-CCCCCCCCccceEEeec---------CCCCEEEEEEeCCCcE-EEEECCCcEEEEeCC-CcceeeecCCCcce
Q 001123 217 CWKMNA-RLLDSDDGFGEVLSWQA---------HRGPVLSLCISSYGDL-WSGSEGGGIKIWPWE-AIEKALSLKPEERH 284 (1149)
Q Consensus 217 vWdl~~-g~~~~~~~~~~~~~l~G---------H~~~VtsVafSpdG~L-~SGS~DgTIRVWdl~-t~~~~~~l~~~~~~ 284 (1149)
+|++.. +.. ..+..+.. +...+.+++|+|||+| +++..+++|++|++. +++... .
T Consensus 112 v~~~~~~g~~------~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~-~------ 178 (347)
T 3hfq_A 112 VMKIAADGAL------TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSE-Q------ 178 (347)
T ss_dssp EEEECTTSCE------EEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEE-E------
T ss_pred EEEeCCCCCe------eecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEE-e------
Confidence 999963 221 22222221 1234899999999995 466678999999997 332110 0
Q ss_pred eeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEe--cCCceEEEEcCC--ccEEEEEecCCceeeEEee
Q 001123 285 TAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA--GFLSFALWDART--RELLKVFNIDGQIENRVDM 360 (1149)
Q Consensus 285 ~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sa--sd~tIrLWD~~T--G~~L~~l~~~g~~~~~v~~ 360 (1149)
..+ .. ........+++++++..++.+ .++.|++||+.. |++.....
T Consensus 179 -~~~-------~~-----------~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~----------- 228 (347)
T 3hfq_A 179 -SVL-------TM-----------EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGI----------- 228 (347)
T ss_dssp -EEE-------EC-----------CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE-----------
T ss_pred -eeE-------Ec-----------CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeee-----------
Confidence 000 00 001234567888888866654 356799999763 43211100
Q ss_pred ccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-E-EEEeC
Q 001123 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-I-WTGGA 438 (1149)
Q Consensus 361 S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-l-aSgs~ 438 (1149)
+.... . .+ .....+..++++|||+ | +++..
T Consensus 229 ----------------~~~~~------------~-------------------~~-~~~~~~~~i~~spdG~~l~v~~~~ 260 (347)
T 3hfq_A 229 ----------------VKTIP------------A-------------------DY-TAHNGAAAIRLSHDGHFLYVSNRG 260 (347)
T ss_dssp ----------------EESSC------------T-------------------TC-CSCCEEEEEEECTTSCEEEEEEET
T ss_pred ----------------eeecC------------C-------------------CC-CCCCcceeEEECCCCCEEEEEeCC
Confidence 00000 0 00 0112356788999997 5 45667
Q ss_pred CCeEEEEeCC--C--CeeEeeecCCccEEEEEe--cCCEEEEeecC-cEEEEEeC
Q 001123 439 NGLLLQWDPN--G--NRLQDFQYLPFAVQCLCT--FGSQIWVGYMN-GIVQVLDL 486 (1149)
Q Consensus 439 DgtIrlWD~t--G--~~l~tl~gH~~~V~sls~--dG~~LaSGs~D-GtIrlWD~ 486 (1149)
+++|.+||+. | +.+..+..|...+..+++ ||++|++++.+ +.|++|++
T Consensus 261 ~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 261 YNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp TTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence 8999999983 4 456666666666666654 79999988865 99999954
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.44 E-value=2.1e-11 Score=137.80 Aligned_cols=251 Identities=10% Similarity=0.026 Sum_probs=167.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCC------------------------CeEEEEECCCCCCCCCCCccceEEee-cCCCCEE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRD------------------------GRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVL 245 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~D------------------------GtIRvWdl~~g~~~~~~~~~~~~~l~-GH~~~Vt 245 (1149)
-+.+.+|+++++|+++++++.+ ++|.+||..++.. ...+. ++-....
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~--------~~~~~~~~~~~p~ 94 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI--------LQSSGKNLFYLPH 94 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE--------EEEECTTTCSSEE
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE--------EeccCCCccCCce
Confidence 5689999999999999999888 5799999987652 33332 5567899
Q ss_pred EEEEeCCCcE-EEEECCCcEEEEeCCCcc-eeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcC-C
Q 001123 246 SLCISSYGDL-WSGSEGGGIKIWPWEAIE-KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-S 322 (1149)
Q Consensus 246 sVafSpdG~L-~SGS~DgTIRVWdl~t~~-~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~-~ 322 (1149)
+|+++|+|+| ++.+.+++|++|+.+... ....+...... +. ..+ .-.....+++++ +
T Consensus 95 gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~--------------g~--~~~----~~~~P~~ia~~~~~ 154 (329)
T 3fvz_A 95 GLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQP--------------GS--DQN----HFCQPTDVAVEPST 154 (329)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBC--------------CC--STT----CCSSEEEEEECTTT
T ss_pred EEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCC--------------CC--Ccc----ccCCCcEEEEeCCC
Confidence 9999999995 577788999999986432 11111100000 00 000 012345678887 5
Q ss_pred CCEEEEec--CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEe
Q 001123 323 RAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIM 400 (1149)
Q Consensus 323 ~~~v~Sas--d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~ 400 (1149)
+..+++.+ +..|++|| .+|+.+..+...+.- ..
T Consensus 155 g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~----------~~---------------------------------- 189 (329)
T 3fvz_A 155 GAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSG----------SS---------------------------------- 189 (329)
T ss_dssp CCEEEEECSSCCEEEEEC-TTSCEEEEECEECCS----------SS----------------------------------
T ss_pred CeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCC----------CC----------------------------------
Confidence 66655553 57899999 567776665322110 00
Q ss_pred ecCCcEEEEeecccccCCCCceEEEEEcCC-CcEE-EEeCCCeEEEEeC-CCCeeEeeec--CCccEEEEEe--------
Q 001123 401 GAADAVRRVAAKGGFGDDNRRTEALTTSID-GMIW-TGGANGLLLQWDP-NGNRLQDFQY--LPFAVQCLCT-------- 467 (1149)
Q Consensus 401 G~~d~v~rv~~~g~~~~~~~~V~ava~s~D-g~la-Sgs~DgtIrlWD~-tG~~l~tl~g--H~~~V~sls~-------- 467 (1149)
...++......++++++ |.|+ +...++.|++||. +|+.+.++.. +...+.++++
T Consensus 190 -------------~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~ 256 (329)
T 3fvz_A 190 -------------PRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAV 256 (329)
T ss_dssp -------------CCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEE
T ss_pred -------------CCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEe
Confidence 00011123456788888 7765 5556889999999 4999988843 4456666644
Q ss_pred cCCEEEEeecCcEEEEEeCC-Cceeeee---eccCCCeEEEE--ecCCeEEeecCCCceeeeeccC
Q 001123 468 FGSQIWVGYMNGIVQVLDLE-GNLLGGW---VAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 468 dG~~LaSGs~DGtIrlWD~~-G~~l~~l---~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
+|+..++.+.+.+|++||.. |+++..+ .+|...+.+|+ +||..+++.+.++.|++|++..
T Consensus 257 ~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 257 NGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp ECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred CCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 34444444456699999964 8888887 47888899988 4777888888999999999753
No 170
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.42 E-value=1.9e-12 Score=162.79 Aligned_cols=323 Identities=10% Similarity=-0.026 Sum_probs=177.3
Q ss_pred CeEEEeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCC---------C
Q 001123 143 EQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD---------G 213 (1149)
Q Consensus 143 ~~l~ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~D---------G 213 (1149)
+++++++|++|++||++++.+...+ .+ ..+. .. ......++|||||+.|+.++.| +
T Consensus 28 g~~~~~~~~~i~~~~~~~~~~~~~~--------~~----~~~~--~~-~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 28 HEYLYKQENNILVFNAEYGNSSVFL--------EN----STFD--EF-GHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp SEEEEEETTEEEEEETTTCCEEEEE--------CT----TTTT--TC-CSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred CcEEEEcCCcEEEEECCCCceEEEE--------ec----hhhh--hh-cccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 4555544999999999988754220 00 0000 00 1122347899999999999987 4
Q ss_pred eEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeee
Q 001123 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVER 292 (1149)
Q Consensus 214 tIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~ 292 (1149)
.+.+||+.++. ...+.+|.+.+..++|||||+ |+.++ |+.|++|++.+++.. .++..+.....+
T Consensus 93 ~~~~~d~~~~~---------~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~-~lt~~g~~~~~~---- 157 (740)
T 4a5s_A 93 SYDIYDLNKRQ---------LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSY-RITWTGKEDIIY---- 157 (740)
T ss_dssp EEEEEETTTTE---------ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCE-ECCSCCBTTTEE----
T ss_pred EEEEEECCCCc---------EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceE-EEcCCCCcccee----
Confidence 55699999865 445678889999999999998 77664 789999999876532 222211110000
Q ss_pred ccccccccc-cccceeeeecCCeEEEEEcCCCCEEEEec-CC-ceEEEEcCCccEEEEEecCCceeeEEeeccCCCcccc
Q 001123 293 SYIDLRSHL-SVNGFSSILTSDIKNLLSDHSRAKVWSAG-FL-SFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAME 369 (1149)
Q Consensus 293 ~~~~l~~~~-~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~-tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~ 369 (1149)
.++. ++..-- . -+....+.+++++.+|+.++ +. .+++|++....... .+......+.++..+.. .
T Consensus 158 -----~g~~~~v~~ee-~-~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G~~--~ 225 (740)
T 4a5s_A 158 -----NGITDWVYEEE-V-FSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAGAV--N 225 (740)
T ss_dssp -----ESBCCHHHHHH-T-SSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTTSC--C
T ss_pred -----cCcccccccch-h-cCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCcCc--C
Confidence 0000 000000 0 01223467788888777654 33 48888763211000 00011112222221111 0
Q ss_pred ccceeeEEecCC---CCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCcE-EEEe----CCCe
Q 001123 370 DEFKTKIVTSSK---KDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMI-WTGG----ANGL 441 (1149)
Q Consensus 370 ~~~~~~~~s~~~---k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~l-aSgs----~Dgt 441 (1149)
...+++++.... ... -...++.....+.++...+..++++|||++ +... .+.+
T Consensus 226 ~~~~l~v~d~~~~~~~~~-------------------~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~ 286 (740)
T 4a5s_A 226 PTVKFFVVNTDSLSSVTN-------------------ATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSV 286 (740)
T ss_dssp CEEEEEEEETTSCCSSSC-------------------CCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEE
T ss_pred CeeEEEEEECCCCCCCCc-------------------ceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEE
Confidence 111222332211 100 011111111112235566778899999983 3322 2347
Q ss_pred EEEEeC-CCC----eeE--ee--ecCCccEE-------EEEecCCEEE-EeecC---cEEEEEeCCCceeeeeeccCCCe
Q 001123 442 LLQWDP-NGN----RLQ--DF--QYLPFAVQ-------CLCTFGSQIW-VGYMN---GIVQVLDLEGNLLGGWVAHSSPV 501 (1149)
Q Consensus 442 IrlWD~-tG~----~l~--tl--~gH~~~V~-------sls~dG~~La-SGs~D---GtIrlWD~~G~~l~~l~gH~~~V 501 (1149)
|++||+ +|+ |.. ++ .+|...|. .+++||+.|+ ..+.+ ..|++||++|.....+......|
T Consensus 287 i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v 366 (740)
T 4a5s_A 287 MDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEV 366 (740)
T ss_dssp EEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCE
T ss_pred EEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEE
Confidence 999999 777 543 23 45665554 3456899877 66543 58999999876656666556667
Q ss_pred EEEE-ecCCeEE-eecC----CCceeeeecc
Q 001123 502 IKMA-VGAGYIF-TLAN----HGGIRGWNVT 526 (1149)
Q Consensus 502 ~sLa-~Dg~~La-SgS~----DgtIRlWdl~ 526 (1149)
..+. +|++.|+ +++. .+...||.+.
T Consensus 367 ~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~ 397 (740)
T 4a5s_A 367 IGIEALTSDYLYYISNEYKGMPGGRNLYKIQ 397 (740)
T ss_dssp EEEEEECSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred EEEEEEeCCEEEEEEecCCCCCceeEEEEEE
Confidence 7655 7877665 4443 2445666654
No 171
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.42 E-value=1.1e-12 Score=164.90 Aligned_cols=279 Identities=8% Similarity=0.002 Sum_probs=170.9
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCC-----EEEEEEeCCCc-EEEEECC-----
Q 001123 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGP-----VLSLCISSYGD-LWSGSEG----- 261 (1149)
Q Consensus 193 ~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~-----VtsVafSpdG~-L~SGS~D----- 261 (1149)
...+++|+|||++|+++ ||+|++||+.++.+ ...+.+|... ..+++|||||+ |+.++.|
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r 87 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNS--------SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWR 87 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCE--------EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSS
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCce--------EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEE
Confidence 45678999999999997 99999999998763 4456777543 34578899998 7888877
Q ss_pred ----CcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEE
Q 001123 262 ----GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALW 337 (1149)
Q Consensus 262 ----gTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLW 337 (1149)
+.+.+||+++++.. .+.. + .+.+...+++++|.+|+.+.+..|.+|
T Consensus 88 ~~~~~~~~~~d~~~~~~~-~l~~-------------------~----------~~~~~~~~~SPdG~~la~~~~~~i~~~ 137 (740)
T 4a5s_A 88 HSYTASYDIYDLNKRQLI-TEER-------------------I----------PNNTQWVTWSPVGHKLAYVWNNDIYVK 137 (740)
T ss_dssp SCEEEEEEEEETTTTEEC-CSSC-------------------C----------CTTEEEEEECSSTTCEEEEETTEEEEE
T ss_pred EccceEEEEEECCCCcEE-Eccc-------------------C----------CCcceeeEECCCCCEEEEEECCeEEEE
Confidence 45569999886532 1211 0 134566788999999998888999999
Q ss_pred EcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCc--EEEEee--cc
Q 001123 338 DARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA--VRRVAA--KG 413 (1149)
Q Consensus 338 D~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~--v~rv~~--~g 413 (1149)
|+.+|+..+. ..++... ..+.+..+...++++. .....+.|+|+++.++....+. +..+.- ..
T Consensus 138 ~~~~~~~~~l-t~~g~~~--~~~~g~~~~v~~ee~~----------~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~ 204 (740)
T 4a5s_A 138 IEPNLPSYRI-TWTGKED--IIYNGITDWVYEEEVF----------SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYS 204 (740)
T ss_dssp SSTTSCCEEC-CSCCBTT--TEEESBCCHHHHHHTS----------SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECC
T ss_pred ECCCCceEEE-cCCCCcc--ceecCcccccccchhc----------CCCcceEECCCCCEEEEEEEcccCCceEEEEeec
Confidence 9999886542 2222110 0001111111111100 1112456788887766554322 222211 00
Q ss_pred cccCCCCceEEEEEcCCCcEEEEeCCCeEEEEeC-C---CC--eeEeee------cCCccEEEE--EecCCEEEEee---
Q 001123 414 GFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-N---GN--RLQDFQ------YLPFAVQCL--CTFGSQIWVGY--- 476 (1149)
Q Consensus 414 ~~~~~~~~V~ava~s~Dg~laSgs~DgtIrlWD~-t---G~--~l~tl~------gH~~~V~sl--s~dG~~LaSGs--- 476 (1149)
.-..+...+..+.++.+|.- ....+|++||+ + |+ ....+. +|...+..+ ++||+.++...
T Consensus 205 ~~~~~~~~~~~~~yp~~G~~---~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~ 281 (740)
T 4a5s_A 205 DESLQYPKTVRVPYPKAGAV---NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRI 281 (740)
T ss_dssp STTCSSCEEEEEECCBTTSC---CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESS
T ss_pred CCCCCCCcceeecCCCCcCc---CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCC
Confidence 00113345556666666531 22337999999 5 53 334443 377778776 56898666553
Q ss_pred -cCcEEEEEeCC-Cc----ee--eee--eccCCCeE-----EEE--ecCCeEE-eecC-C--CceeeeeccC
Q 001123 477 -MNGIVQVLDLE-GN----LL--GGW--VAHSSPVI-----KMA--VGAGYIF-TLAN-H--GGIRGWNVTS 527 (1149)
Q Consensus 477 -~DGtIrlWD~~-G~----~l--~~l--~gH~~~V~-----sLa--~Dg~~La-SgS~-D--gtIRlWdl~s 527 (1149)
.+..|++||++ |+ +. ..+ .+|.++|. +++ +||+.++ ..|. + ..|.+||+..
T Consensus 282 ~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~ 353 (740)
T 4a5s_A 282 QNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK 353 (740)
T ss_dssp TTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTC
T ss_pred CCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCC
Confidence 34589999975 66 32 333 57887776 444 6999877 6654 3 3577788754
No 172
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.41 E-value=1.6e-12 Score=158.14 Aligned_cols=102 Identities=11% Similarity=-0.095 Sum_probs=82.7
Q ss_pred EEEEEcCCCc-EEEEeCC----CeEEEEeCCCCeeEeeecCCccEEEEEe--cCCEEEEeecCc--EEEEEeCC-Cceee
Q 001123 423 EALTTSIDGM-IWTGGAN----GLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNG--IVQVLDLE-GNLLG 492 (1149)
Q Consensus 423 ~ava~s~Dg~-laSgs~D----gtIrlWD~tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~DG--tIrlWD~~-G~~l~ 492 (1149)
.++++||||+ |++++.| ++|++||+++..++.+..|...+.++++ ||++||+++.+| +|++||++ |++.
T Consensus 153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~- 231 (582)
T 3o4h_A 153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE- 231 (582)
T ss_dssp CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-
T ss_pred ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-
Confidence 5788999998 6667766 7899999944334578888888887754 899999888899 99999987 5555
Q ss_pred eeeccCCCeEEE----------EecCCeEEeecCCCceeeeec
Q 001123 493 GWVAHSSPVIKM----------AVGAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 493 ~l~gH~~~V~sL----------a~Dg~~LaSgS~DgtIRlWdl 525 (1149)
.+.+|...|.++ ++||+.+++++.|+++++|++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 232 DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 788888766543 468888999999999999997
No 173
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.38 E-value=3.7e-10 Score=128.08 Aligned_cols=227 Identities=9% Similarity=0.076 Sum_probs=132.5
Q ss_pred CceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCCCCCCCccceEEeec--------CCCCEEEEEEeCCCc-EE-EEEC
Q 001123 192 SSVMCMVGDEASGVVWSGH-RDGRIMCWKMNARLLDSDDGFGEVLSWQA--------HRGPVLSLCISSYGD-LW-SGSE 260 (1149)
Q Consensus 192 ~~V~~lafs~dg~~LaSGS-~DGtIRvWdl~~g~~~~~~~~~~~~~l~G--------H~~~VtsVafSpdG~-L~-SGS~ 260 (1149)
.....+++ +|++|+.++ .|++|.+|++..... ...........| +...+.+++|+|||+ |+ ++..
T Consensus 100 ~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 175 (361)
T 3scy_A 100 ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGA--LLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG 175 (361)
T ss_dssp SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSC--BCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT
T ss_pred CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCc--CcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC
Confidence 45566777 788777766 689999999975321 011111111112 233468999999998 65 4556
Q ss_pred CCcEEEEeCCCcce----e-eecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec--CCc
Q 001123 261 GGGIKIWPWEAIEK----A-LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLS 333 (1149)
Q Consensus 261 DgTIRVWdl~t~~~----~-~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas--d~t 333 (1149)
+++|++|++..... . +.... ..... .. ........+++++++..++.+. +++
T Consensus 176 ~~~v~v~~~~~~~~~~~~~~l~~~~---~~~~~-------~~-----------~~~~~~~~~~~spdg~~l~v~~~~~~~ 234 (361)
T 3scy_A 176 TDQIHKFNINPNANADNKEKFLTKG---TPEAF-------KV-----------APGSGPRHLIFNSDGKFAYLINEIGGT 234 (361)
T ss_dssp TTEEEEEEECTTCCTTTCCCCEEEE---EEEEE-------EC-----------CTTCCEEEEEECTTSSEEEEEETTTCE
T ss_pred CCEEEEEEEcCCCCcccccceeecc---cccce-------ec-----------CCCCCCeEEEEcCCCCEEEEEcCCCCe
Confidence 89999999865321 0 00000 00000 00 0112345678888888776554 578
Q ss_pred eEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecc
Q 001123 334 FALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG 413 (1149)
Q Consensus 334 IrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g 413 (1149)
|.+||+.+|++...... ..
T Consensus 235 v~v~~~~~g~~~~~~~~---------------------------~~---------------------------------- 253 (361)
T 3scy_A 235 VIAFRYADGMLDEIQTV---------------------------AA---------------------------------- 253 (361)
T ss_dssp EEEEEEETTEEEEEEEE---------------------------ES----------------------------------
T ss_pred EEEEEecCCceEEeEEE---------------------------ec----------------------------------
Confidence 99999987653221100 00
Q ss_pred cccCCCCceEEEEEcCCCc-EEEEeC--CCeEEEEeCC---CC--eeEeeecCCccEEEEE--ecCCEEEEee-cCcEEE
Q 001123 414 GFGDDNRRTEALTTSIDGM-IWTGGA--NGLLLQWDPN---GN--RLQDFQYLPFAVQCLC--TFGSQIWVGY-MNGIVQ 482 (1149)
Q Consensus 414 ~~~~~~~~V~ava~s~Dg~-laSgs~--DgtIrlWD~t---G~--~l~tl~gH~~~V~sls--~dG~~LaSGs-~DGtIr 482 (1149)
...+......++++|||+ |+++.. +++|.+|+++ |+ .+..+.. ...+.+++ +||++|++++ .+++|+
T Consensus 254 -~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~ 331 (361)
T 3scy_A 254 -DTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQ 331 (361)
T ss_dssp -CSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEE
T ss_pred -CCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEE
Confidence 011112235678999997 655554 4899999983 54 4455544 34455554 5799999888 679999
Q ss_pred EEe--CC-Cceeeee-eccCCCeEEEEe
Q 001123 483 VLD--LE-GNLLGGW-VAHSSPVIKMAV 506 (1149)
Q Consensus 483 lWD--~~-G~~l~~l-~gH~~~V~sLa~ 506 (1149)
+|+ .+ |++.... ..|...+.+|++
T Consensus 332 v~~~d~~~g~~~~~~~~~~~~~p~~v~~ 359 (361)
T 3scy_A 332 IFERDQATGLLTDIKKDIKVDKPVCLKF 359 (361)
T ss_dssp EEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred EEEEECCCCcEeecceeeeCCCCeEEEE
Confidence 965 43 6654432 234556777653
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.38 E-value=2.8e-11 Score=149.07 Aligned_cols=278 Identities=10% Similarity=-0.010 Sum_probs=164.0
Q ss_pred cceeEEEEEeeCCeEE-EeC----CCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCC
Q 001123 131 IGCFLRTIVCTEEQLW-AGG----ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASG 204 (1149)
Q Consensus 131 ~~~~l~~l~~~~~~l~-ag~----D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~ 204 (1149)
.+..++.++.+.+.++ +.. ++..+||....+.....+ ..+. ......+++ .+...+...||||+
T Consensus 22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l--------~~~~--~~~~~~~~~~~~~~~~~~~SPDg~ 91 (662)
T 3azo_A 22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESA--------LPAP--WNVRNRVFEYSGFPWAGVPRPAGG 91 (662)
T ss_dssp TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEES--------SCTT--CCBCCCGGGTCCCCEEEECCSSSS
T ss_pred cCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCccee--------CCCC--ccccccccccCCccceeeeecCCC
Confidence 4567778888866654 432 677999996433222110 0000 000001111 11122222249998
Q ss_pred E-EEEEeC-CCeEEEEECC--C-CCCCCCCCccceEEeec-----CCCCEEEEEEeCCCc-EEEEECC----------Cc
Q 001123 205 V-VWSGHR-DGRIMCWKMN--A-RLLDSDDGFGEVLSWQA-----HRGPVLSLCISSYGD-LWSGSEG----------GG 263 (1149)
Q Consensus 205 ~-LaSGS~-DGtIRvWdl~--~-g~~~~~~~~~~~~~l~G-----H~~~VtsVafSpdG~-L~SGS~D----------gT 263 (1149)
. |+.++. +..|.+|++. + +. ...+.. |...+.+++|||||+ |++++.| .+
T Consensus 92 ~~la~~~~~~~~l~~~~~~~~g~~~---------~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~ 162 (662)
T 3azo_A 92 PLLVFTHFGDQRLYAFEPDAPGGAV---------PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRF 162 (662)
T ss_dssp CEEEEEBTTTCCEEEECTTSTTCCC---------CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEE
T ss_pred eEEEEEECCCCeEEEEcCCCCCCCC---------CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeE
Confidence 7 665543 5666666665 2 32 344555 778899999999998 8888877 68
Q ss_pred EEEEeCCC------cceeeecC-CCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-C----
Q 001123 264 IKIWPWEA------IEKALSLK-PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-F---- 331 (1149)
Q Consensus 264 IRVWdl~t------~~~~~~l~-~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d---- 331 (1149)
|++||+.+ ++. ..+. ... ..+..+++++++..|+.++ +
T Consensus 163 i~~~~~~~~~~~~~~~~-~~l~~~~~-----------------------------~~~~~~~~SpDG~~la~~~~~~~~~ 212 (662)
T 3azo_A 163 LAAVPLDGSAAADRSAV-RELSDDAH-----------------------------RFVTGPRLSPDGRQAVWLAWDHPRM 212 (662)
T ss_dssp EEEEETTSTTTTCGGGS-EESSCSCS-----------------------------SEECCCEECTTSSEEEEEEECTTCC
T ss_pred EEEEECCCCccccCCce-eEEEecCC-----------------------------CcccCceECCCCCEEEEEECCCCCC
Confidence 99999987 432 1221 110 1122234667777665433 2
Q ss_pred ----CceEEEEcC-Ccc---EEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecC
Q 001123 332 ----LSFALWDAR-TRE---LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA 403 (1149)
Q Consensus 332 ----~tIrLWD~~-TG~---~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~ 403 (1149)
..|.+||+. +|+ ......
T Consensus 213 ~~~~~~i~~~d~~~~g~~~~~~~l~~------------------------------------------------------ 238 (662)
T 3azo_A 213 PWEGTELKTARVTEDGRFADTRTLLG------------------------------------------------------ 238 (662)
T ss_dssp TTTCEEEEEEEECTTSCEEEEEEEEE------------------------------------------------------
T ss_pred CCCCcEEEEEEECCCCcccccEEeCC------------------------------------------------------
Confidence 258888887 452 111111
Q ss_pred CcEEEEeecccccCCCCceEEEEEcCCCcE-EEEeCCC--eEEEEeC-CCCeeEeeecCCcc--------EEEEEe--cC
Q 001123 404 DAVRRVAAKGGFGDDNRRTEALTTSIDGMI-WTGGANG--LLLQWDP-NGNRLQDFQYLPFA--------VQCLCT--FG 469 (1149)
Q Consensus 404 d~v~rv~~~g~~~~~~~~V~ava~s~Dg~l-aSgs~Dg--tIrlWD~-tG~~l~tl~gH~~~--------V~sls~--dG 469 (1149)
++...+..++++|||++ ++++.|+ .|.+||+ +|++.+.+.++... +.++++ +|
T Consensus 239 -------------~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~ 305 (662)
T 3azo_A 239 -------------GPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANG 305 (662)
T ss_dssp -------------ETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTS
T ss_pred -------------CCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCC
Confidence 11123445678999885 4666777 6777777 56655444433222 344554 68
Q ss_pred CEEEEeecCcEEEEE--eCCCceeeeeeccCCCeEEE-EecCCeEE--eecCCCceeeeec
Q 001123 470 SQIWVGYMNGIVQVL--DLEGNLLGGWVAHSSPVIKM-AVGAGYIF--TLANHGGIRGWNV 525 (1149)
Q Consensus 470 ~~LaSGs~DGtIrlW--D~~G~~l~~l~gH~~~V~sL-a~Dg~~La--SgS~DgtIRlWdl 525 (1149)
+++++++. ++++|| |+++..+..+..|.+.+..+ +++++.++ +++.+...++|.+
T Consensus 306 ~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 306 LIAVVHGK-GAAVLGILDPESGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp CEEEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEE
Confidence 89999988 999999 66666678889998889888 78776443 4556666666654
No 175
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.35 E-value=1.6e-11 Score=131.96 Aligned_cols=132 Identities=17% Similarity=0.206 Sum_probs=79.8
Q ss_pred eEEEEEEEEeCCCCCCc-----hhhcccccCCCCCcceEEEEeeccccccchhhhhhhhhhccCCCCcchhhHHHHHhcc
Q 001123 552 LKILAGTWNVGQGRASQ-----DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKI 626 (1149)
Q Consensus 552 ~~i~v~TWNv~~~~~~~-----~~l~~wl~~~~~~~Di~viGlQEi~~~~~~~~~~~~ke~~~~~~~~~~~~W~~~i~~~ 626 (1149)
-.+.|.||||++..... ..+.++|.. .+||| |+|||++-. +.+.|.+.
T Consensus 8 ~~l~v~swNi~g~~~~~~~~r~~~i~~~i~~--~~pDI--i~LQEv~~~-----------------------~~~~l~~~ 60 (256)
T 4gz1_A 8 STISFITWNIDGLDGCNLPERARGVCSCLAL--YSPDV--VFLQEVIPP-----------------------YCAYLKKR 60 (256)
T ss_dssp GEEEEEEEECCTTCCTTHHHHHHHHHHHHHH--HCCSE--EEEEEECHH-----------------------HHHHHHHH
T ss_pred CcEEEEEEEcCCCcCcCHHHHHHHHHHHHHH--cCCCE--EEEEcCCHH-----------------------HHHHHHhh
Confidence 47889999998654432 335666653 35785 789998421 22334343
Q ss_pred cCCCCcEEEEeeeccceeeeeeeeeccccCccceeEeeeEeecccccccCcceeEEEEEEeceEEEEeeecccccchhHH
Q 001123 627 LDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVN 706 (1149)
Q Consensus 627 L~~~~~y~~v~s~qL~Gl~l~vfvr~~l~~~i~~v~~~~v~tG~~g~~gNKGaV~ir~~~~~t~lcFVn~HLaA~~~~~~ 706 (1149)
+. .|.... ..-.+-...++.++..... +... .....+....++.+.+.+.+.+..+.++|+||.+....-+
T Consensus 61 ~~---~~~~~~-~~~~~~~~~~l~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~ 131 (256)
T 4gz1_A 61 AA---SYTIIT-GNEEGYFTAILLKKGRVKF---KSQE--IIPFPNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREHSA 131 (256)
T ss_dssp CT---TEEEEE-SCSSSSEEEEEEETTTEEE---EEEE--EEECTTCSSCCEEEEEEEEETTEEEEEEECBCCCSGGGHH
T ss_pred cc---ccceee-ccccCCceEEEEEeccccc---eecc--cccCCcccccceEEEEEEEeCCEEEEEEeecccccccchh
Confidence 32 121111 1112223345555543211 1111 1122334456788999999999999999999999988888
Q ss_pred HHHHHHHHHHHhc
Q 001123 707 RRNADFDHVYRTM 719 (1149)
Q Consensus 707 ~Rn~d~~~I~~~l 719 (1149)
.|.+++..|++.+
T Consensus 132 ~~~~q~~~~~~~l 144 (256)
T 4gz1_A 132 ERIRQLKTVLGKM 144 (256)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhHHHHHHhhhh
Confidence 8888888887764
No 176
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.34 E-value=1.7e-10 Score=132.82 Aligned_cols=82 Identities=11% Similarity=0.037 Sum_probs=61.0
Q ss_pred EEEcCCCc-EEEEeC-----------CCeEEEEeC-CCCeeEeeecCCccEEEEE--ecCCEEEEeecCcEEEEEeCC-C
Q 001123 425 LTTSIDGM-IWTGGA-----------NGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-G 488 (1149)
Q Consensus 425 va~s~Dg~-laSgs~-----------DgtIrlWD~-tG~~l~tl~gH~~~V~sls--~dG~~LaSGs~DGtIrlWD~~-G 488 (1149)
+++++|+. ++.+.. .++|.+||+ +++.+.++..|. +.+++ +||++|++++. ++|.+||.+ +
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 56888854 554432 348999999 789999998876 66664 58999999887 999999975 8
Q ss_pred --ceeeeeeccCCCeEEEE--ecCC
Q 001123 489 --NLLGGWVAHSSPVIKMA--VGAG 509 (1149)
Q Consensus 489 --~~l~~l~gH~~~V~sLa--~Dg~ 509 (1149)
++++.+..+...-..++ +||+
T Consensus 336 ~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 336 EPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SCEEEEEETTSCSSEEEEEECCCSC
T ss_pred cceeeEEeccCCCCcEEEEecCCCC
Confidence 78888766655556555 5554
No 177
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.34 E-value=3.5e-11 Score=137.70 Aligned_cols=241 Identities=7% Similarity=0.002 Sum_probs=143.5
Q ss_pred CCeEEEeCCCCEEEEeCC-CCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCC--EEEEEe--------
Q 001123 142 EEQLWAGGENGLRVWNLK-ELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG--VVWSGH-------- 210 (1149)
Q Consensus 142 ~~~l~ag~D~tVrvWd~~-~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~--~LaSGS-------- 210 (1149)
++.|+++..++|++|++. ++..... . ...+.+.+.+++|+|||+ +|++++
T Consensus 51 g~~l~~~~~~~v~~~~~~~~g~~~~~-----------------~--~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~ 111 (365)
T 1jof_A 51 RKNIYGAAMKKWSSFAVKSPTEIVHE-----------------A--SHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYA 111 (365)
T ss_dssp SSEEEEEEBTEEEEEEEEETTEEEEE-----------------E--EEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEE
T ss_pred CCEEEEEccceEEEEEECCCCCEEEe-----------------e--EeecCCCCccEEECCCCCEEEEEEecCCcceecc
Confidence 555776544499999986 5543211 0 011012244588999998 466664
Q ss_pred -----CCCeEEEEECCC-CCCCCCCCccceEEee----cCCCCEEEEEEeCCCc-EEEEE-CCCcEEEEeCC-Ccceeee
Q 001123 211 -----RDGRIMCWKMNA-RLLDSDDGFGEVLSWQ----AHRGPVLSLCISSYGD-LWSGS-EGGGIKIWPWE-AIEKALS 277 (1149)
Q Consensus 211 -----~DGtIRvWdl~~-g~~~~~~~~~~~~~l~----GH~~~VtsVafSpdG~-L~SGS-~DgTIRVWdl~-t~~~~~~ 277 (1149)
.||++++|++.. +. ....+. .|...+.+++|+|||+ |+++. .+++|++|+++ +++....
T Consensus 112 ~~~~~~~g~v~v~~~~~~g~--------~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~ 183 (365)
T 1jof_A 112 NPFYKFAGYGNVFSVSETGK--------LEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELV 183 (365)
T ss_dssp EEESSSCCEEEEEEECTTCC--------EEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred ceeecCCceEEEEccCCCCc--------CcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEe
Confidence 799999999974 33 122222 2567899999999998 66554 47899999997 5432110
Q ss_pred cCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec--CCceEEEEcC--CccEEEEEecCCc
Q 001123 278 LKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDAR--TRELLKVFNIDGQ 353 (1149)
Q Consensus 278 l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas--d~tIrLWD~~--TG~~L~~l~~~g~ 353 (1149)
..+ .... +......+++++++..++.+. +++|.+|+.. +|++...+.
T Consensus 184 --------~~~-------~~~~----------~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~---- 234 (365)
T 1jof_A 184 --------GSV-------DAPD----------PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHH---- 234 (365)
T ss_dssp --------EEE-------ECSS----------TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE----
T ss_pred --------eeE-------ecCC----------CCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccc----
Confidence 000 0000 013356778889888877654 4679998764 565422110
Q ss_pred eeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCC------CceEEEE-
Q 001123 354 IENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN------RRTEALT- 426 (1149)
Q Consensus 354 ~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~------~~V~ava- 426 (1149)
. +.... . .+.++. ..+..++
T Consensus 235 ~----------------------~~~~~------------~-------------------~~~g~~~~~~~~~~~~~i~~ 261 (365)
T 1jof_A 235 S----------------------FPLIP------------P-------------------GIPDRDPETGKGLYRADVCA 261 (365)
T ss_dssp E----------------------EESSC------------T-------------------TCCCBCTTTSSBSEEEEEEE
T ss_pred e----------------------EEcCC------------C-------------------CcCCcccccccccccccEEE
Confidence 0 00000 0 000111 1356788
Q ss_pred EcCCCc-EEEEeCC-C-----eEEEEeC--CCCeeE---eeecCCccEE--EEEe---cCCEEEEeecC-cEEEEEeCCC
Q 001123 427 TSIDGM-IWTGGAN-G-----LLLQWDP--NGNRLQ---DFQYLPFAVQ--CLCT---FGSQIWVGYMN-GIVQVLDLEG 488 (1149)
Q Consensus 427 ~s~Dg~-laSgs~D-g-----tIrlWD~--tG~~l~---tl~gH~~~V~--sls~---dG~~LaSGs~D-GtIrlWD~~G 488 (1149)
++|||+ |++++.+ . +|++|++ +|+... .+..+...+. ++++ ||++|++++.+ ++|+||++++
T Consensus 262 ~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 262 LTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp ECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred ECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 999997 6555432 2 8999998 466543 2323332222 5677 89999999864 9999999875
Q ss_pred cee
Q 001123 489 NLL 491 (1149)
Q Consensus 489 ~~l 491 (1149)
+.+
T Consensus 342 ~~l 344 (365)
T 1jof_A 342 EFL 344 (365)
T ss_dssp TEE
T ss_pred hhC
Confidence 533
No 178
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.33 E-value=8.9e-11 Score=133.57 Aligned_cols=288 Identities=8% Similarity=-0.045 Sum_probs=151.6
Q ss_pred eEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCCCCCCCccceEEeecCCCC-EEEEEEeCCCc-EEEEECCCcEEEEe
Q 001123 194 VMCMVGDEASGVVWSGHRD---GRIMCWKMNARLLDSDDGFGEVLSWQAHRGP-VLSLCISSYGD-LWSGSEGGGIKIWP 268 (1149)
Q Consensus 194 V~~lafs~dg~~LaSGS~D---GtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~-VtsVafSpdG~-L~SGS~DgTIRVWd 268 (1149)
+.+++|||||++|+....+ ..|.+||+.++. ...+..+... +..++|||||+ |+.++.++.|++||
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~---------~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d 108 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ---------AVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVD 108 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE---------EEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCc---------EEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEE
Confidence 5567899999998776543 368888988754 3344434333 33478999998 78889999999999
Q ss_pred CCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEE------ecCCceEEEEcCCc
Q 001123 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS------AGFLSFALWDARTR 342 (1149)
Q Consensus 269 l~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~S------asd~tIrLWD~~TG 342 (1149)
+.+++............. ....+............ ......++++..++. ..+..|.+||+.+|
T Consensus 109 ~~~~~~~~~~~~~~~~~~----~g~~l~~~~~~~~~~~~------~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g 178 (396)
T 3c5m_A 109 LETLEEQVIYTVDEEWKG----YGTWVANSDCTKLVGIE------ILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETG 178 (396)
T ss_dssp TTTCCEEEEEECCTTEEE----EEEEEECTTSSEEEEEE------EEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTC
T ss_pred CCCCCcEEEEecccccCC----CCCEEEeccCCcccccc------ccccccCCCCcceeeeeeccCCCcceEEEEECCCC
Confidence 987654322221111000 00000000000000000 000012233333221 12346899999999
Q ss_pred cEEEEEecCCceeeEEeecc-CCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec----ccccC
Q 001123 343 ELLKVFNIDGQIENRVDMSL-LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK----GGFGD 417 (1149)
Q Consensus 343 ~~L~~l~~~g~~~~~v~~S~-~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~----g~~~~ 417 (1149)
+......... .+..+.+++ .+...+- .......... ..+..+... ..+..
T Consensus 179 ~~~~~~~~~~-~~~~~~~sp~dg~~l~~-------~~~~~~~~~~-----------------~~l~~~d~~~~~~~~l~~ 233 (396)
T 3c5m_A 179 ELEVIHQDTA-WLGHPIYRPFDDSTVGF-------CHEGPHDLVD-----------------ARMWLVNEDGSNVRKIKE 233 (396)
T ss_dssp CEEEEEEESS-CEEEEEEETTEEEEEEE-------EECSCSSSCS-----------------CCCEEEETTSCCCEESSC
T ss_pred cEEeeccCCc-ccccceECCCCCCEEEE-------EecCCCCCCC-----------------ceEEEEECCCCceeEeec
Confidence 8766554322 223444444 2221110 0000000000 001111100 01112
Q ss_pred C--CCceEEEEEcCCCc-EEEEeCC-----CeEEEEeC-CCCeeEeeecCCccEEEEEe-cCCEEEEee-----------
Q 001123 418 D--NRRTEALTTSIDGM-IWTGGAN-----GLLLQWDP-NGNRLQDFQYLPFAVQCLCT-FGSQIWVGY----------- 476 (1149)
Q Consensus 418 ~--~~~V~ava~s~Dg~-laSgs~D-----gtIrlWD~-tG~~l~tl~gH~~~V~sls~-dG~~LaSGs----------- 476 (1149)
+ ...+..++++|||. |+.++.+ ++|.+||+ +|+........ .....+++ ||++|++++
T Consensus 234 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~~~~s~~dg~~l~~~~~~~p~~~~~~~ 312 (396)
T 3c5m_A 234 HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-PCSHLMSNFDGSLMVGDGCDAPVDVADAD 312 (396)
T ss_dssp CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-SEEEEEECSSSSEEEEEECCC--------
T ss_pred cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-CCCCCccCCCCceEEEecCCcceeecccc
Confidence 2 22466788999987 6665543 45999999 56543322111 11145567 999888765
Q ss_pred -----cCcEEEEEeCCCceeeeeeccCCC-----------eEE--EEecCCeEEeecC-CCceeeeecc
Q 001123 477 -----MNGIVQVLDLEGNLLGGWVAHSSP-----------VIK--MAVGAGYIFTLAN-HGGIRGWNVT 526 (1149)
Q Consensus 477 -----~DGtIrlWD~~G~~l~~l~gH~~~-----------V~s--La~Dg~~LaSgS~-DgtIRlWdl~ 526 (1149)
.++.|++||+++..+..+..|... +.. .++||++|+.++. ++...+|.+.
T Consensus 313 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 313 SYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp --CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 347899999875444566666652 333 3479998886654 6777888765
No 179
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.32 E-value=4.8e-10 Score=125.84 Aligned_cols=95 Identities=12% Similarity=0.077 Sum_probs=68.0
Q ss_pred cCCCc-EEEEeCC--------CeEEEEeCCCCeeEeeecCCccEEE-EEe-cCCEEEEeecCcEEEEEeCC-Cceeeeee
Q 001123 428 SIDGM-IWTGGAN--------GLLLQWDPNGNRLQDFQYLPFAVQC-LCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (1149)
Q Consensus 428 s~Dg~-laSgs~D--------gtIrlWD~tG~~l~tl~gH~~~V~s-ls~-dG~~LaSGs~DGtIrlWD~~-G~~l~~l~ 495 (1149)
+|||. |+.++.+ ..|.+|| +|+....+.+|...+.. +.+ +| .+++++.++.++|| +. |+. ..+.
T Consensus 223 spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~~~~~~~~~~~~sdg-~~~~~~~~~~~~l~-~~~g~~-~~~~ 298 (347)
T 2gop_A 223 DSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMGILDEVDRGVGQAKIKDGK-VYFTLFEEGSVNLY-IWDGEI-KPIA 298 (347)
T ss_dssp EECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESSTTCCSEEEEEEEETTE-EEEEEEETTEEEEE-EESSSE-EEEE
T ss_pred CCCCCEEEEEEccccCCccccceEEEEC-CCceEeccccCCcccCCccEEcCc-EEEEEecCCcEEEE-EcCCce-EEEe
Confidence 56665 5555533 4788899 77766656667777775 554 66 88999999999999 76 655 4445
Q ss_pred ccCCCeEEEEecCCeEEeecCCCce-eeeecc
Q 001123 496 AHSSPVIKMAVGAGYIFTLANHGGI-RGWNVT 526 (1149)
Q Consensus 496 gH~~~V~sLa~Dg~~LaSgS~DgtI-RlWdl~ 526 (1149)
.|.+.|.++++.+..+++++.+++. ++|.+.
T Consensus 299 ~~~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 299 KGRHWIMGFDVDEIVVYLKETATRLRELFTWD 330 (347)
T ss_dssp CSSSEEEEEEESSSEEEEEECSSSCCEEEEES
T ss_pred cCCCeEEeeeeeCcEEEEEcCCCChHHheEeC
Confidence 5677888888644777788777765 888865
No 180
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.31 E-value=1.6e-10 Score=133.06 Aligned_cols=258 Identities=9% Similarity=0.070 Sum_probs=149.6
Q ss_pred CCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEE----------CCCcEEEEeCCCcceeeecC
Q 001123 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS----------EGGGIKIWPWEAIEKALSLK 279 (1149)
Q Consensus 211 ~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS----------~DgTIRVWdl~t~~~~~~l~ 279 (1149)
.|++|.+||..+++ ...++..+.++ .++|+|||+ |+.++ .|++|.+||+.+.+....+.
T Consensus 29 ~d~~v~v~D~~t~~--------~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~ 98 (361)
T 2oiz_A 29 TESRVHVYDYTNGK--------FLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEIS 98 (361)
T ss_dssp GGCEEEEEETTTCC--------EEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEE
T ss_pred ccCeEEEEECCCCe--------EEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEE
Confidence 58899999998765 35566777666 899999998 66655 37889999998765433221
Q ss_pred CCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec---CCceEEEEcCCccEEEE-EecCCcee
Q 001123 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALWDARTRELLKV-FNIDGQIE 355 (1149)
Q Consensus 280 ~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas---d~tIrLWD~~TG~~L~~-l~~~g~~~ 355 (1149)
....+.. + ......+++++++..|+.+. +++|.+||+.+++.+.. +...+...
T Consensus 99 ~~~~~~~-------------~----------g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~ 155 (361)
T 2oiz_A 99 LPPKRVQ-------------G----------LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWS 155 (361)
T ss_dssp ECTTBCC-------------B----------CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEE
T ss_pred cCccccc-------------c----------CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcce
Confidence 1000000 0 01223456788888887653 46899999999998887 54433210
Q ss_pred eEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeec-CCc-EE-EEeecccccCCCCceEEEEEcCCC-
Q 001123 356 NRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA-ADA-VR-RVAAKGGFGDDNRRTEALTTSIDG- 431 (1149)
Q Consensus 356 ~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~-~d~-v~-rv~~~g~~~~~~~~V~ava~s~Dg- 431 (1149)
+.+.+.... ..+.+.+++..++... .++ +. .......+..+...+ .+.+++++
T Consensus 156 --v~~~p~~~~--------------------~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~ 212 (361)
T 2oiz_A 156 --VIPQPNRPR--------------------SFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKD 212 (361)
T ss_dssp --EEECTTSSS--------------------EEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSS
T ss_pred --eEEcCCCCe--------------------eEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCC
Confidence 111221100 0011111121111110 001 00 000001111111111 12234554
Q ss_pred cEEEEeCCCeEEEEeCC-CC--eeEeeec------------CCccEEEEEecCCEEEEeec-----------CcEEEEEe
Q 001123 432 MIWTGGANGLLLQWDPN-GN--RLQDFQY------------LPFAVQCLCTFGSQIWVGYM-----------NGIVQVLD 485 (1149)
Q Consensus 432 ~laSgs~DgtIrlWD~t-G~--~l~tl~g------------H~~~V~sls~dG~~LaSGs~-----------DGtIrlWD 485 (1149)
.++..+.+++|.+||+. +. .+..+.- ......+++.+|++++++.. +++|.+||
T Consensus 213 ~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD 292 (361)
T 2oiz_A 213 KAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMD 292 (361)
T ss_dssp EEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEE
T ss_pred EEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEE
Confidence 46666788999999994 32 2222210 11112466778888887654 45899999
Q ss_pred CC-CceeeeeeccCCCeEEEE--ecCCeEEeecCCCceeeeeccC
Q 001123 486 LE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 486 ~~-G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
++ ++.+..+..|. +.+++ +||++|++++. ++|.+||+.+
T Consensus 293 ~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t 334 (361)
T 2oiz_A 293 TKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQ 334 (361)
T ss_dssp TTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSS
T ss_pred CCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCC
Confidence 76 78899998887 77776 69999998886 9999999765
No 181
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.31 E-value=3.4e-10 Score=127.89 Aligned_cols=226 Identities=11% Similarity=-0.031 Sum_probs=143.9
Q ss_pred CEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCC
Q 001123 152 GLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDG 230 (1149)
Q Consensus 152 tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~ 230 (1149)
+|.+||.+++..... + ..+ ......++++++|.++++.+.+++|++|+.++..
T Consensus 70 ~i~~~d~~~g~~~~~-----------------~---~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~------ 123 (329)
T 3fvz_A 70 TILVIDPNNAEILQS-----------------S---GKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE------ 123 (329)
T ss_dssp CEEEECTTTCCEEEE-----------------E---CTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSS------
T ss_pred cEEEEECCCCeEEec-----------------c---CCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCe------
Confidence 688998876664322 0 001 3467889999999999999999999999987642
Q ss_pred ccceEEe---------ecCCCCEEEEEEeC-CCcE-EEEE-CCCcEEEEeCCCcceeeecCCCcceeeEEEeeecccccc
Q 001123 231 FGEVLSW---------QAHRGPVLSLCISS-YGDL-WSGS-EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLR 298 (1149)
Q Consensus 231 ~~~~~~l---------~GH~~~VtsVafSp-dG~L-~SGS-~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~ 298 (1149)
..+..+ .+|....++|+|+| +|.| ++.+ .+++|++|+.+ +.....+.....
T Consensus 124 -~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~~~~~~g~--------------- 186 (329)
T 3fvz_A 124 -GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVTQWGEESS--------------- 186 (329)
T ss_dssp -CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEEEECEECC---------------
T ss_pred -EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEEEeccCCC---------------
Confidence 123333 35666799999999 7886 5665 69999999953 332222110000
Q ss_pred ccccccceeeeecCCeEEEEEcCCCCEEEEe--cCCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeE
Q 001123 299 SHLSVNGFSSILTSDIKNLLSDHSRAKVWSA--GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKI 376 (1149)
Q Consensus 299 ~~~~~~g~~~~~~~dv~~las~~~~~~v~Sa--sd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~ 376 (1149)
+.....+ .-.....+++++++..++.+ .++.|++||..+|+++.++...+.-
T Consensus 187 ~~~~~~~----~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~---------------------- 240 (329)
T 3fvz_A 187 GSSPRPG----QFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFG---------------------- 240 (329)
T ss_dssp SSSCCTT----EESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTT----------------------
T ss_pred CCCCCCc----ccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccC----------------------
Confidence 0000000 00224567788874555443 3567999999999988876422110
Q ss_pred EecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcC------CCcE-EEEeCCCeEEEEeC-C
Q 001123 377 VTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI------DGMI-WTGGANGLLLQWDP-N 448 (1149)
Q Consensus 377 ~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~------Dg~l-aSgs~DgtIrlWD~-t 448 (1149)
..+.+++++| +|.+ ++.+.+.+|++||. +
T Consensus 241 -------------------------------------------~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~ 277 (329)
T 3fvz_A 241 -------------------------------------------RNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSS 277 (329)
T ss_dssp -------------------------------------------TCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTT
T ss_pred -------------------------------------------CCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCC
Confidence 0011112222 2222 23445679999998 8
Q ss_pred CCeeEeee---cCCccEEEEEe--cCCEEEEeecCcEEEEEeCCCc
Q 001123 449 GNRLQDFQ---YLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGN 489 (1149)
Q Consensus 449 G~~l~tl~---gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~G~ 489 (1149)
|+.+.++. ++......|++ +|..+++...++.|++|+++++
T Consensus 278 g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 278 GEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred CeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 99998884 56677888876 5877778888999999998754
No 182
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.30 E-value=4.5e-10 Score=124.00 Aligned_cols=222 Identities=14% Similarity=0.074 Sum_probs=142.7
Q ss_pred CCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEE-CCCcEEEEe
Q 001123 191 VSSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS-EGGGIKIWP 268 (1149)
Q Consensus 191 ~~~V~~lafs~dg~-~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS-~DgTIRVWd 268 (1149)
.....+++|+++|+ ++|++..++.|..|+..++ ...+..+.+.+.+|+++++|+|+.+. .++.|.+||
T Consensus 27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~----------~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ----------LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQR 96 (296)
T ss_dssp CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----------EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----------eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence 44567899999998 8999999999999999863 34566788899999999999976554 568999999
Q ss_pred CCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecC-Cc--------------
Q 001123 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LS-------------- 333 (1149)
Q Consensus 269 l~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd-~t-------------- 333 (1149)
..+++.......... .....+..+++++++..+++... ++
T Consensus 97 ~~~g~~~~~~~~~~~-------------------------~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~ 151 (296)
T 3e5z_A 97 EPGGEWESIADSFEG-------------------------KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELP 151 (296)
T ss_dssp STTCCEEEEECEETT-------------------------EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSS
T ss_pred CCCCcEEEEeeccCC-------------------------CCCCCCCCEEECCCCCEEEECCccccccccccccccccCC
Confidence 976643211100000 00112334556666654443110 11
Q ss_pred -eEEEEcCC-ccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEee
Q 001123 334 -FALWDART-RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA 411 (1149)
Q Consensus 334 -IrLWD~~T-G~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~ 411 (1149)
-.||.+.. |+. ..
T Consensus 152 ~~~l~~~~~~g~~--------------------------------------------------------------~~--- 166 (296)
T 3e5z_A 152 GRWVFRLAPDGTL--------------------------------------------------------------SA--- 166 (296)
T ss_dssp SCEEEEECTTSCE--------------------------------------------------------------EE---
T ss_pred CcEEEEECCCCCE--------------------------------------------------------------EE---
Confidence 11221111 110 00
Q ss_pred cccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEEeC--CCCe---eEeeecCCccEEEEEe--cCCEEEEeecCcEEEE
Q 001123 412 KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP--NGNR---LQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQV 483 (1149)
Q Consensus 412 ~g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~--tG~~---l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrl 483 (1149)
+..+......++++|||. +++.+.++.|.+||+ +|+. .+.+..+...+..+++ +|+ |+++. ++.|++
T Consensus 167 ---~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~-~~~v~~ 241 (296)
T 3e5z_A 167 ---PIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA-GDGVHV 241 (296)
T ss_dssp ---EECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE-TTEEEE
T ss_pred ---eecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc-CCeEEE
Confidence 011223345678999987 556667889999998 4655 3444334444556665 476 44555 889999
Q ss_pred EeCCCceeeeeeccCCCeEEEEe---cCCeEEeecCCC
Q 001123 484 LDLEGNLLGGWVAHSSPVIKMAV---GAGYIFTLANHG 518 (1149)
Q Consensus 484 WD~~G~~l~~l~gH~~~V~sLa~---Dg~~LaSgS~Dg 518 (1149)
||.+|+++..+..+.. +.++++ |++.|+.++.++
T Consensus 242 ~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~ 278 (296)
T 3e5z_A 242 LTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE 278 (296)
T ss_dssp ECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred ECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence 9999999998888888 888774 667888887774
No 183
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.25 E-value=3.1e-10 Score=139.67 Aligned_cols=238 Identities=13% Similarity=-0.016 Sum_probs=144.1
Q ss_pred CceEEEEEcCCCCEEEEEeCC----------CeEEEEECCC------CCCCCCCCccceEEee-cCCCCEEEEEEeCCCc
Q 001123 192 SSVMCMVGDEASGVVWSGHRD----------GRIMCWKMNA------RLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGD 254 (1149)
Q Consensus 192 ~~V~~lafs~dg~~LaSGS~D----------GtIRvWdl~~------g~~~~~~~~~~~~~l~-GH~~~VtsVafSpdG~ 254 (1149)
..+.+++|||||+.|++++.| .+|++||+.+ +. ...+. .|.+.+.+++|||||+
T Consensus 130 ~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------~~~l~~~~~~~~~~~~~SpDG~ 200 (662)
T 3azo_A 130 LRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA---------VRELSDDAHRFVTGPRLSPDGR 200 (662)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG---------SEESSCSCSSEECCCEECTTSS
T ss_pred ccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc---------eeEEEecCCCcccCceECCCCC
Confidence 457789999999999999988 6899999987 43 34455 6667899999999998
Q ss_pred -EEEEECC--------CcEEEEeCC-Ccc--eeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCC
Q 001123 255 -LWSGSEG--------GGIKIWPWE-AIE--KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS 322 (1149)
Q Consensus 255 -L~SGS~D--------gTIRVWdl~-t~~--~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~ 322 (1149)
|+.++.| .+|++||++ ++. ....+.. ++ ...+..++++++
T Consensus 201 ~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~------------------~~----------~~~~~~~~~spd 252 (662)
T 3azo_A 201 QAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG------------------GP----------EEAIAQAEWAPD 252 (662)
T ss_dssp EEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE------------------ET----------TBCEEEEEECTT
T ss_pred EEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC------------------CC----------CceEcceEECCC
Confidence 7766655 379999997 441 1111100 00 123445667777
Q ss_pred CCEEEEec-CC--ceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceE
Q 001123 323 RAKVWSAG-FL--SFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAI 399 (1149)
Q Consensus 323 ~~~v~Sas-d~--tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i 399 (1149)
+..++++. ++ .|.+||+.+|++...+..+.... .-.+.
T Consensus 253 g~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~--------------------------------~p~w~------- 293 (662)
T 3azo_A 253 GSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFA--------------------------------GPLWT------- 293 (662)
T ss_dssp SCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSS--------------------------------CCCCS-------
T ss_pred CeEEEEECCCCCeEEEEEECCCCceeeccccccccc--------------------------------Ccccc-------
Confidence 77555554 34 46667776666543322111100 00000
Q ss_pred eecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEeCCCeEEEE--eCCCCeeEeeecCCccEEEE-EecCCEEE--
Q 001123 400 MGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQW--DPNGNRLQDFQYLPFAVQCL-CTFGSQIW-- 473 (1149)
Q Consensus 400 ~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs~DgtIrlW--D~tG~~l~tl~gH~~~V~sl-s~dG~~La-- 473 (1149)
..+..++++++++ +++++. ++++|| |.++..++.+..|...+.++ +++|+.++
T Consensus 294 --------------------~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~ 352 (662)
T 3azo_A 294 --------------------PGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDAAGPWTEWAATLTVSGTRAVGV 352 (662)
T ss_dssp --------------------TTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEEEEEETTEEEEE
T ss_pred --------------------ccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEEEecCCCEEEEE
Confidence 0012356788877 457777 999999 55666688899898889888 88886444
Q ss_pred EeecCc--EEEEEeCC-CceeeeeeccCCCeEEEEe--cCCeEEeecCCCceeeeecc
Q 001123 474 VGYMNG--IVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 474 SGs~DG--tIrlWD~~-G~~l~~l~gH~~~V~sLa~--Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
+++.+. .|.+||++ |++......|...+..... .....+....+..|..|-..
T Consensus 353 ~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~~ 410 (662)
T 3azo_A 353 AASPRTAYEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIYP 410 (662)
T ss_dssp EEETTEEEEEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEEEC
T ss_pred EcCCCCCCEEEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEEEC
Confidence 444554 45555665 4443333455444333221 22233444444467777543
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.23 E-value=5.1e-09 Score=117.08 Aligned_cols=222 Identities=14% Similarity=0.094 Sum_probs=138.6
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEe-ecCCCCEEEEEEeCCCcEEEE-ECC----CcE
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGDLWSG-SEG----GGI 264 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l-~GH~~~VtsVafSpdG~L~SG-S~D----gTI 264 (1149)
...+.+++|+++|++++++..++.|.+||..++. ...+ ..+...|.+++++|+|+|+.+ ..+ +.|
T Consensus 44 ~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~---------~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i 114 (333)
T 2dg1_A 44 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE---------IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGI 114 (333)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC---------EEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEE
T ss_pred CccccCcEECCCCCEEEEECCCCEEEEEeCCCCc---------EEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceE
Confidence 4456889999999988899999999999998765 2333 357788999999999996544 445 589
Q ss_pred EEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecC-------CceEEE
Q 001123 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-------LSFALW 337 (1149)
Q Consensus 265 RVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd-------~tIrLW 337 (1149)
.+||.+++.....+.... ....+..++.++++..+++... ..|..|
T Consensus 115 ~~~d~~~~~~~~~~~~~~---------------------------~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~ 167 (333)
T 2dg1_A 115 FAATENGDNLQDIIEDLS---------------------------TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYV 167 (333)
T ss_dssp EEECTTSCSCEEEECSSS---------------------------SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEE
T ss_pred EEEeCCCCEEEEEEccCc---------------------------cCCcccceEECCCCCEEEEeccccccCCCceEEEE
Confidence 999987654221111000 0123456667776654444332 123333
Q ss_pred EcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccC
Q 001123 338 DARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGD 417 (1149)
Q Consensus 338 D~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~ 417 (1149)
|..+++......
T Consensus 168 ~~~~~~~~~~~~-------------------------------------------------------------------- 179 (333)
T 2dg1_A 168 SPDFRTVTPIIQ-------------------------------------------------------------------- 179 (333)
T ss_dssp CTTSCCEEEEEE--------------------------------------------------------------------
T ss_pred eCCCCEEEEeec--------------------------------------------------------------------
Confidence 333222111000
Q ss_pred CCCceEEEEEcCCCc-EE-EEeCCCeEEEEeC--CCCeeEee--------ecCCccEEEEEe--cCCEEEEeecCcEEEE
Q 001123 418 DNRRTEALTTSIDGM-IW-TGGANGLLLQWDP--NGNRLQDF--------QYLPFAVQCLCT--FGSQIWVGYMNGIVQV 483 (1149)
Q Consensus 418 ~~~~V~ava~s~Dg~-la-Sgs~DgtIrlWD~--tG~~l~tl--------~gH~~~V~sls~--dG~~LaSGs~DGtIrl 483 (1149)
....+..+++++||. ++ +.+.++.|.+||. +|..+..+ .++ ..+..+++ +|+..++...++.|.+
T Consensus 180 ~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~ 258 (333)
T 2dg1_A 180 NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLV 258 (333)
T ss_dssp EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEE
Confidence 001234567889986 65 4455789999999 45544322 222 35666766 4776666667899999
Q ss_pred EeCCCceeeeeeccCC------CeEEEE--ecCCeEEeecCC
Q 001123 484 LDLEGNLLGGWVAHSS------PVIKMA--VGAGYIFTLANH 517 (1149)
Q Consensus 484 WD~~G~~l~~l~gH~~------~V~sLa--~Dg~~LaSgS~D 517 (1149)
||.+|+.+..+..+.. .+.+++ +|++.|+.++.+
T Consensus 259 ~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 259 FNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp ECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred ECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 9998887777765433 577777 477677655444
No 185
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.23 E-value=4.3e-09 Score=115.22 Aligned_cols=225 Identities=7% Similarity=0.035 Sum_probs=139.3
Q ss_pred CeEEEe--CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEE-cCCCCEEEEEeC-CCeEEE
Q 001123 143 EQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVG-DEASGVVWSGHR-DGRIMC 217 (1149)
Q Consensus 143 ~~l~ag--~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~laf-s~dg~~LaSGS~-DGtIRv 217 (1149)
+.+|.+ .++.|++||.+ +...... +. .+ . ..+ ...+.++++ ++++.++++... ++.|++
T Consensus 41 g~l~v~~~~~~~i~~~d~~-g~~~~~~---~~---~~---~------~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 41 NDIIVADTNNHRIQIFDKE-GRFKFQF---GE---CG---K------RDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp CCEEEEEGGGTEEEEECTT-SCEEEEE---CC---BS---S------STTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCEEEEECCCCEEEEECCC-CcEEEEe---cc---cC---C------CcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 456653 47789999976 3322210 00 00 0 001 346788999 477777777654 899999
Q ss_pred EECCCCCCCCCCCccceEEee-cCCCCEEEEEEeCCCcEE-EEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccc
Q 001123 218 WKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGDLW-SGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (1149)
Q Consensus 218 Wdl~~g~~~~~~~~~~~~~l~-GH~~~VtsVafSpdG~L~-SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~ 295 (1149)
||..+ . ....+. ++...+.+|+++|+|+|+ +.+.++.|++||.+. +....+...
T Consensus 105 ~d~~g-~--------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~-------------- 160 (286)
T 1q7f_A 105 YNQYG-Q--------FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFGCS-------------- 160 (286)
T ss_dssp ECTTS-C--------EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEECT--------------
T ss_pred ECCCC-c--------EEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEEEeCCC--------------
Confidence 99543 2 233442 345679999999999964 666789999999743 211111000
Q ss_pred cccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCcccccccee
Q 001123 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKT 374 (1149)
Q Consensus 296 ~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~ 374 (1149)
.+ ......+++++++..+++.. ++.|++||. +|+.+..+..++
T Consensus 161 ---~~----------~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g---------------------- 204 (286)
T 1q7f_A 161 ---KH----------LEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEG---------------------- 204 (286)
T ss_dssp ---TT----------CSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTT----------------------
T ss_pred ---Cc----------cCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCC----------------------
Confidence 00 02345677777665444433 568999996 444444332111
Q ss_pred eEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCcEEEEe-CCC-eEEEEeCCCCee
Q 001123 375 KIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG-ANG-LLLQWDPNGNRL 452 (1149)
Q Consensus 375 ~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~laSgs-~Dg-tIrlWD~tG~~l 452 (1149)
+...+..++++++|.++.+. .++ .|++||.+|+.+
T Consensus 205 -------------------------------------------~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~ 241 (286)
T 1q7f_A 205 -------------------------------------------ITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLI 241 (286)
T ss_dssp -------------------------------------------TSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEE
T ss_pred -------------------------------------------ccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEE
Confidence 01234567788898876544 455 999999999988
Q ss_pred EeeecCCc--cEEEEEe--cCCEEEEeecCcEEEEEeCC
Q 001123 453 QDFQYLPF--AVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 453 ~tl~gH~~--~V~sls~--dG~~LaSGs~DGtIrlWD~~ 487 (1149)
..+..+.. .+.++++ +|+.+++ +.|++|++|+..
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~ 279 (286)
T 1q7f_A 242 SALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYV 279 (286)
T ss_dssp EEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred EEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence 88876543 3666655 5765555 679999999964
No 186
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.22 E-value=8.8e-11 Score=126.38 Aligned_cols=132 Identities=17% Similarity=0.138 Sum_probs=79.9
Q ss_pred ceEEEEEEEEeCCCCCCc-----hhhcccccCCCCCcceEEEEeeccccccchhhhhhhhhhccCCCCcchhhHHHHHhc
Q 001123 551 NLKILAGTWNVGQGRASQ-----DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGK 625 (1149)
Q Consensus 551 ~~~i~v~TWNv~~~~~~~-----~~l~~wl~~~~~~~Di~viGlQEi~~~~~~~~~~~~ke~~~~~~~~~~~~W~~~i~~ 625 (1149)
...+.|.||||++..... +.+.++|.. .+|| ||+|||+.-. +.+.+.+
T Consensus 11 ~~~l~v~s~Ni~g~~~~~~~~r~~~i~~~i~~--~~pD--Ii~LQEv~~~-----------------------~~~~l~~ 63 (256)
T 4fva_A 11 GFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKN--VNPD--ILFLQEVVDR-----------------------DLAPIDK 63 (256)
T ss_dssp TCEEEEEEEECCTTCCTTHHHHHHHHHHHHHH--HCCS--EEEEEEECST-----------------------TCHHHHG
T ss_pred CCEEEEEEEecCCCCCcCHHHHHHHHHHHHHH--cCCC--EEEEEecChh-----------------------HhHHHHH
Confidence 458999999998654322 235666653 4578 4789998421 1112333
Q ss_pred ccCCCCcEEEEeeeccceeeeeeeeeccccCccceeEeeeEeecccccccCcceeEEEEEEeceEEEEeeecccccchhH
Q 001123 626 ILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAV 705 (1149)
Q Consensus 626 ~L~~~~~y~~v~s~qL~Gl~l~vfvr~~l~~~i~~v~~~~v~tG~~g~~gNKGaV~ir~~~~~t~lcFVn~HLaA~~~~~ 705 (1149)
.+. .|.......-.+-..+++.++.+. .+....+ .+......++.+.+.+.+.+..+.++|+||.+....-
T Consensus 64 ~~~---~~~~~~~~~~~~~g~~il~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~~ 134 (256)
T 4fva_A 64 LQS---LYKIYYSNKGCQYYTAILVSKMFD----VEKHDVI--HFQNSGMYRTLQILEGSIGGLKVFLLNTHLESTREHR 134 (256)
T ss_dssp GGG---TEEEEESSTTSSSEEEEEEETTCE----EEEEEEE--ECTTCSSCCEEEEEEEEETTEEEEEEEEECCCSGGGH
T ss_pred hcC---CceEeecCCCCCcceEEEEeeccc----ceecccc--cCCCCcccceeEEEEEEeCCeEEEEEEecCCCCCcch
Confidence 331 122222233333345566665431 2222222 2223335677888999999999999999999998877
Q ss_pred HHHHHHHHHHHHh
Q 001123 706 NRRNADFDHVYRT 718 (1149)
Q Consensus 706 ~~Rn~d~~~I~~~ 718 (1149)
.+|.+++..+...
T Consensus 135 ~~~~~q~~~~~~~ 147 (256)
T 4fva_A 135 PQRCAQFGFCMDK 147 (256)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7788877777664
No 187
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.19 E-value=1.3e-09 Score=122.29 Aligned_cols=98 Identities=13% Similarity=0.117 Sum_probs=67.9
Q ss_pred EEEEEcCCCcEEEEeCC------C---eEEEEeCCCCeeEeeecCCccEEEEEecCCEEEEeecC--------cEEEEEe
Q 001123 423 EALTTSIDGMIWTGGAN------G---LLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMN--------GIVQVLD 485 (1149)
Q Consensus 423 ~ava~s~Dg~laSgs~D------g---tIrlWD~tG~~l~tl~gH~~~V~sls~dG~~LaSGs~D--------GtIrlWD 485 (1149)
..++++|||.+++++.+ . .|.+|| +|+. +.+..+ ..+.++++||++|+.++.+ ..|.+||
T Consensus 174 ~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d-~~~~-~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 250 (347)
T 2gop_A 174 SSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE-DGKE-EKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD 250 (347)
T ss_dssp CEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE-TTEE-EEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred ccccCCCCeEEEEEecccccccccccccEEEeC-CCce-EEeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC
Confidence 34557777733344433 1 355555 5554 445455 6677778899999887754 4799999
Q ss_pred CCCceeeeeeccCCCeEE-EEe-cCCeEEeecCCCceeeeecc
Q 001123 486 LEGNLLGGWVAHSSPVIK-MAV-GAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 486 ~~G~~l~~l~gH~~~V~s-La~-Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
+|+......+|...|.. +.+ |+ ++++++.|+.+++| +.
T Consensus 251 -~~~~~~l~~~~~~~~~~~~~~sdg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 251 -GKEVMGILDEVDRGVGQAKIKDGK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp -SSCEEESSTTCCSEEEEEEEETTE-EEEEEEETTEEEEE-EE
T ss_pred -CCceEeccccCCcccCCccEEcCc-EEEEEecCCcEEEE-Ec
Confidence 77766666677777876 655 66 88899999999999 86
No 188
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.18 E-value=2.8e-10 Score=120.57 Aligned_cols=45 Identities=9% Similarity=0.155 Sum_probs=38.3
Q ss_pred cCcceeEEEEEEeceEEEEeeecccccchhHHHHHHHHHHHHHhc
Q 001123 675 GNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (1149)
Q Consensus 675 gNKGaV~ir~~~~~t~lcFVn~HLaA~~~~~~~Rn~d~~~I~~~l 719 (1149)
...+.+.+++.+.+..+.++|+||.+..+..+.|.+++..|++.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~v~~~hl~~~~~~~~~r~~q~~~~~~~l 138 (250)
T 4f1h_A 94 MMRNLLIAQVTFSGQKLYLMTSHLESCKNQSQERTKQLRVVLQKI 138 (250)
T ss_dssp SCCEEEEEEEEETTEEEEEEECBCCCSGGGHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEEecCCcEEEEeccccccccccHHHHHHHHHHHHHHH
Confidence 346677888889999999999999999888888888888887764
No 189
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.16 E-value=1.2e-09 Score=136.42 Aligned_cols=231 Identities=6% Similarity=-0.076 Sum_probs=142.3
Q ss_pred CceEEEEEcCCCCEEE-----EEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCE--EEEEEeCCCc-EEEEECCCc
Q 001123 192 SSVMCMVGDEASGVVW-----SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPV--LSLCISSYGD-LWSGSEGGG 263 (1149)
Q Consensus 192 ~~V~~lafs~dg~~La-----SGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~V--tsVafSpdG~-L~SGS~DgT 263 (1149)
..+.+++|||||++|| +|+.+.+|++||++++.. .. ..|...+ .+++|+|||+ |+.++.|.+
T Consensus 121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~--------~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~ 190 (695)
T 2bkl_A 121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEW--------SK--VDVIEGGKYATPKWTPDSKGFYYEWLPTD 190 (695)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCB--------CS--SCCBSCCTTCCCEECTTSSEEEEEECCCC
T ss_pred EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCC--------cC--CcccCcccccceEEecCCCEEEEEEecCC
Confidence 3578899999999999 777778999999998762 10 1122222 6799999998 888888887
Q ss_pred -------------EEEEeCCCcce--eeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEE
Q 001123 264 -------------IKIWPWEAIEK--ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS 328 (1149)
Q Consensus 264 -------------IRVWdl~t~~~--~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~S 328 (1149)
|++|++.+++. .+.+.... + ...+..+.+++++..|+.
T Consensus 191 ~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~-----------------~----------~~~~~~~~~SpDG~~l~~ 243 (695)
T 2bkl_A 191 PSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTG-----------------D----------PTTFLQSDLSRDGKYLFV 243 (695)
T ss_dssp TTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCC-----------------C----------TTCEEEEEECTTSCCEEE
T ss_pred CCCccccCCCCCEEEEEECCCCchhceEEEecCC-----------------C----------CEEEEEEEECCCCCEEEE
Confidence 99999987542 11111000 0 012344556677765543
Q ss_pred e-cCC----ceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecC
Q 001123 329 A-GFL----SFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA 403 (1149)
Q Consensus 329 a-sd~----tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~ 403 (1149)
+ .++ .|.+||..+++........
T Consensus 244 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~---------------------------------------------------- 271 (695)
T 2bkl_A 244 YILRGWSENDVYWKRPGEKDFRLLVKGV---------------------------------------------------- 271 (695)
T ss_dssp EEEETTTEEEEEEECTTCSSCEEEEECS----------------------------------------------------
T ss_pred EEeCCCCceEEEEEcCCCCceEEeecCC----------------------------------------------------
Confidence 3 223 3555554443322111100
Q ss_pred CcEEEEeecccccCCCCceEEEEEcCCCcEEEEe----CCCeEEEEeC-CCCe--eEeeecC--CccEEEEEe-cCCEEE
Q 001123 404 DAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG----ANGLLLQWDP-NGNR--LQDFQYL--PFAVQCLCT-FGSQIW 473 (1149)
Q Consensus 404 d~v~rv~~~g~~~~~~~~V~ava~s~Dg~laSgs----~DgtIrlWD~-tG~~--l~tl~gH--~~~V~sls~-dG~~La 473 (1149)
..+....+++++ ++..+ .++.|.+||+ +++. .+.+..| ...|..+++ ++..++
T Consensus 272 ----------------~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~ 334 (695)
T 2bkl_A 272 ----------------GAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSL 334 (695)
T ss_dssp ----------------SCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEE
T ss_pred ----------------CceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEE
Confidence 001111222233 43333 3588999999 5543 3555544 345777766 466788
Q ss_pred EeecCcEEEEEe--CCCceeeeeecc-CCCeEEEE--ecCCeEE----eecCCCceeeeeccCC
Q 001123 474 VGYMNGIVQVLD--LEGNLLGGWVAH-SSPVIKMA--VGAGYIF----TLANHGGIRGWNVTSP 528 (1149)
Q Consensus 474 SGs~DGtIrlWD--~~G~~l~~l~gH-~~~V~sLa--~Dg~~La----SgS~DgtIRlWdl~sp 528 (1149)
++..|+..+||. ++|+.+..+..| .+.|..++ +|++.++ |...+++|++||+.+.
T Consensus 335 ~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 335 EYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp EEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 888999988886 457777777766 66676665 5777666 4456789999998653
No 190
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.15 E-value=6.5e-09 Score=129.93 Aligned_cols=233 Identities=10% Similarity=-0.018 Sum_probs=143.3
Q ss_pred ceEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCc---
Q 001123 193 SVMCMVGDEASGVVWSGHRDG-----RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG--- 263 (1149)
Q Consensus 193 ~V~~lafs~dg~~LaSGS~DG-----tIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgT--- 263 (1149)
.+..++|||||++||.++.++ +|++||+.++.. ...++.+ ..+.+++|||||+ |+.++.|+.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~-------~~~~~~~--~~~~~~~wspDg~~l~~~~~~~~~~~ 196 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE-------LPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGK 196 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE-------EEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC-------CcccccC--cccceEEEEeCCCEEEEEEECCcccc
Confidence 577899999999998776654 899999998752 1112222 2367899999998 888888776
Q ss_pred -------------EEEEeCCCccee--eecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEE
Q 001123 264 -------------IKIWPWEAIEKA--LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS 328 (1149)
Q Consensus 264 -------------IRVWdl~t~~~~--~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~S 328 (1149)
|++|++.+++.. +.+.... + ......+.+++++..|+.
T Consensus 197 ~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~-----------------~----------~~~~~~~~~SpDg~~l~~ 249 (710)
T 2xdw_A 197 SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD-----------------E----------PKWMGGAELSDDGRYVLL 249 (710)
T ss_dssp CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT-----------------C----------TTCEEEEEECTTSCEEEE
T ss_pred ccccccccCCCCEEEEEECCCCcccceEEeccCC-----------------C----------CeEEEEEEEcCCCCEEEE
Confidence 999999775421 1111000 0 011233455666665543
Q ss_pred ec------CCceEEEEcCC------cc-EEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccc
Q 001123 329 AG------FLSFALWDART------RE-LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRS 395 (1149)
Q Consensus 329 as------d~tIrLWD~~T------G~-~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~ 395 (1149)
.+ +..|.+||+.+ ++ .+..+..+
T Consensus 250 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~-------------------------------------------- 285 (710)
T 2xdw_A 250 SIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN-------------------------------------------- 285 (710)
T ss_dssp EEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS--------------------------------------------
T ss_pred EEEccCCCccEEEEEECcccccccCCccceEEeeCC--------------------------------------------
Confidence 32 34588888865 32 11111100
Q ss_pred cceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEeC----CCeEEEEeC-CCC--eeEeeecCCc--cEEEE
Q 001123 396 RNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGA----NGLLLQWDP-NGN--RLQDFQYLPF--AVQCL 465 (1149)
Q Consensus 396 ~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs~----DgtIrlWD~-tG~--~l~tl~gH~~--~V~sl 465 (1149)
.+ .+.. .+++||. ++..+. ++.|.+||+ +++ ..+.+..|.. .|.++
T Consensus 286 -------~~----------------~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~ 341 (710)
T 2xdw_A 286 -------FE----------------GEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWV 341 (710)
T ss_dssp -------SS----------------SCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEE
T ss_pred -------CC----------------cEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEE
Confidence 00 0111 1334443 443333 346999999 453 3567777655 57777
Q ss_pred Eec--CCEEEEeecCcE--EEEEeC-CCceeeeeeccCCCeEEEE--ecCCeEE-e---ecCCCceeeeeccCCC
Q 001123 466 CTF--GSQIWVGYMNGI--VQVLDL-EGNLLGGWVAHSSPVIKMA--VGAGYIF-T---LANHGGIRGWNVTSPG 529 (1149)
Q Consensus 466 s~d--G~~LaSGs~DGt--IrlWD~-~G~~l~~l~gH~~~V~sLa--~Dg~~La-S---gS~DgtIRlWdl~sp~ 529 (1149)
++. +..++++..|+. |++||+ +|+.+..+..|.+.|.+++ ++++.++ + ....++|.+||+.+..
T Consensus 342 ~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 342 ACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 653 567777777874 566787 5888888888888888887 4676555 3 3346789999987643
No 191
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.12 E-value=3.8e-08 Score=108.54 Aligned_cols=235 Identities=9% Similarity=-0.003 Sum_probs=147.1
Q ss_pred CCceEEEEEcCCCCEEEE-------EeCCCeEEEEECCCCCCCCCCCccceEEee-----cCCCCEEEEEEeCC-CcEEE
Q 001123 191 VSSVMCMVGDEASGVVWS-------GHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-----AHRGPVLSLCISSY-GDLWS 257 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaS-------GS~DGtIRvWdl~~g~~~~~~~~~~~~~l~-----GH~~~VtsVafSpd-G~L~S 257 (1149)
.....+++|+++|.++++ +..++.|.+||..++. ...+. +|.+.+.+++++++ |+|+.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~---------~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v 87 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK---------KTVICKPEVNGYGGIPAGCQCDRDANQLFV 87 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC---------EEEEECCEETTEECCEEEEEECSSSSEEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCc---------EEEEEecccCCCCCCCceEEEecCCCcEEE
Confidence 445678999999998888 7889999999987765 22232 36678999999999 88877
Q ss_pred EECCCcEEEEeCCCcceeeec-CCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCC----
Q 001123 258 GSEGGGIKIWPWEAIEKALSL-KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL---- 332 (1149)
Q Consensus 258 GS~DgTIRVWdl~t~~~~~~l-~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~---- 332 (1149)
++.++.|.+||.+ ++.. .+ ..... + .....+..++.++++...++....
T Consensus 88 ~~~~~~l~~~d~~-g~~~-~~~~~~~~---------------~---------~~~~~~~~i~~d~~g~l~v~~~~~~~~~ 141 (314)
T 1pjx_A 88 ADMRLGLLVVQTD-GTFE-EIAKKDSE---------------G---------RRMQGCNDCAFDYEGNLWITAPAGEVAP 141 (314)
T ss_dssp EETTTEEEEEETT-SCEE-ECCSBCTT---------------S---------CBCBCCCEEEECTTSCEEEEECBCBCTT
T ss_pred EECCCCEEEEeCC-CCEE-EEEeccCC---------------C---------ccccCCcCEEECCCCCEEEEecCccccc
Confidence 6666689999987 4322 11 10000 0 001224456666665433332211
Q ss_pred ------------ceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEe
Q 001123 333 ------------SFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIM 400 (1149)
Q Consensus 333 ------------tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~ 400 (1149)
.|..||.. |+.....
T Consensus 142 ~~~~~~~~~~~~~l~~~~~~-g~~~~~~---------------------------------------------------- 168 (314)
T 1pjx_A 142 ADYTRSMQEKFGSIYCFTTD-GQMIQVD---------------------------------------------------- 168 (314)
T ss_dssp SCCCBTTSSSCEEEEEECTT-SCEEEEE----------------------------------------------------
T ss_pred ccccccccCCCCeEEEECCC-CCEEEec----------------------------------------------------
Confidence 12222221 2111100
Q ss_pred ecCCcEEEEeecccccCCCCceEEEEEc----CCCc-EEEE-eCCCeEEEEeC--CCC-----eeEeeecCC-ccEEEEE
Q 001123 401 GAADAVRRVAAKGGFGDDNRRTEALTTS----IDGM-IWTG-GANGLLLQWDP--NGN-----RLQDFQYLP-FAVQCLC 466 (1149)
Q Consensus 401 G~~d~v~rv~~~g~~~~~~~~V~ava~s----~Dg~-laSg-s~DgtIrlWD~--tG~-----~l~tl~gH~-~~V~sls 466 (1149)
.+......++++ +||. ++.+ ..++.|.+||. +|+ ....+.++. ..+..++
T Consensus 169 ----------------~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~ 232 (314)
T 1pjx_A 169 ----------------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD 232 (314)
T ss_dssp ----------------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred ----------------cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceE
Confidence 000112345667 8874 5544 46789999997 353 233444443 5566776
Q ss_pred e--cCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEEEE--ecCCeEE-eecCCCceeeeeccCCC
Q 001123 467 T--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIF-TLANHGGIRGWNVTSPG 529 (1149)
Q Consensus 467 ~--dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa--~Dg~~La-SgS~DgtIRlWdl~sp~ 529 (1149)
+ +|...++...++.|.+||.+ |+.+..+..|...+.+++ +|++.|+ +.+.++.|..|++..++
T Consensus 233 ~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g 301 (314)
T 1pjx_A 233 FDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp EBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred ECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence 6 47776666678899999987 888787888878899988 4788554 55667899999987644
No 192
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.12 E-value=5.9e-09 Score=118.65 Aligned_cols=257 Identities=11% Similarity=-0.025 Sum_probs=137.7
Q ss_pred ceEEeecCCCCEEE-----EEEeCCCc-EEEEEC-CCc--EEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccc
Q 001123 233 EVLSWQAHRGPVLS-----LCISSYGD-LWSGSE-GGG--IKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSV 303 (1149)
Q Consensus 233 ~~~~l~GH~~~Vts-----VafSpdG~-L~SGS~-DgT--IRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~ 303 (1149)
+...+..|.+.+.. .+|||||+ |+.++. |++ |.+||+.+++.......+ .
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~-------------------~-- 80 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGR-------------------G-- 80 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSS-------------------C--
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCC-------------------C--
Confidence 46677788777776 88999998 777776 774 778888776533211110 0
Q ss_pred cceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEE--eeccCCCccccccceeeEEecC
Q 001123 304 NGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRV--DMSLLPDFAMEDEFKTKIVTSS 380 (1149)
Q Consensus 304 ~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v--~~S~~~~~~~~~~~~~~~~s~~ 380 (1149)
..+...++++++..|+.++ +..|.+||+.+|+....+..+....... .+++.....+... ....
T Consensus 81 --------~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~-----~~~~ 147 (388)
T 3pe7_A 81 --------DNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIE-----IRRE 147 (388)
T ss_dssp --------BCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEE-----EEGG
T ss_pred --------CCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeecccc-----ccCc
Confidence 0111234667777776655 5689999999999887776655543222 2233333221100 0000
Q ss_pred CCCccceeeeeeccccceEeecCCc-EEEEee-cc---cccCCCCceEEEEEcC-CCc-EEEEeCC------CeEEEEeC
Q 001123 381 KKDKAQSSFGFFQRSRNAIMGAADA-VRRVAA-KG---GFGDDNRRTEALTTSI-DGM-IWTGGAN------GLLLQWDP 447 (1149)
Q Consensus 381 ~k~~~~~si~f~~~~~~~i~G~~d~-v~rv~~-~g---~~~~~~~~V~ava~s~-Dg~-laSgs~D------gtIrlWD~ 447 (1149)
..........|.. ......+. +..+.. .+ .+..+...+..+.++| ||. |+..+.+ ..|.+||.
T Consensus 148 ~~~~~~~~~~~~~----~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~ 223 (388)
T 3pe7_A 148 DWVPLTDWKKFHE----FYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINE 223 (388)
T ss_dssp GCCCCCSHHHHHH----HGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEET
T ss_pred ccccccccchhhh----hhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeC
Confidence 0000000000000 00000001 111110 00 1223344577888999 887 6655543 37888888
Q ss_pred CCCeeEeeecCCc--cEEEE--EecCCEEEEeec-----CcEEEEEeCC-Cc--eeeeeeccCCCe-----EEEEecCCe
Q 001123 448 NGNRLQDFQYLPF--AVQCL--CTFGSQIWVGYM-----NGIVQVLDLE-GN--LLGGWVAHSSPV-----IKMAVGAGY 510 (1149)
Q Consensus 448 tG~~l~tl~gH~~--~V~sl--s~dG~~LaSGs~-----DGtIrlWD~~-G~--~l~~l~gH~~~V-----~sLa~Dg~~ 510 (1149)
+|..++.+..+.. .+..+ ++||++|+..+. ++.|++||++ |+ .+..+.++.... ..+++||+.
T Consensus 224 ~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~ 303 (388)
T 3pe7_A 224 DGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSD 303 (388)
T ss_dssp TSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECC
T ss_pred CCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCc
Confidence 7766666666552 45544 458998866443 2359999987 54 344444421111 145689988
Q ss_pred EEee---------cCCCceeeeeccC
Q 001123 511 IFTL---------ANHGGIRGWNVTS 527 (1149)
Q Consensus 511 LaSg---------S~DgtIRlWdl~s 527 (1149)
|+.. +.+..|++||+.+
T Consensus 304 l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 304 APVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp C------------CCCCEEEEEETTT
T ss_pred ceeEeeeccccccCCCCEEEEEeccC
Confidence 7743 4567899999764
No 193
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.11 E-value=8.7e-10 Score=119.94 Aligned_cols=45 Identities=11% Similarity=0.235 Sum_probs=36.6
Q ss_pred ccCcceeEEEEEEeceEEEEeeecccccchhHHHHHHHHHHHHHh
Q 001123 674 IGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRT 718 (1149)
Q Consensus 674 ~gNKGaV~ir~~~~~t~lcFVn~HLaA~~~~~~~Rn~d~~~I~~~ 718 (1149)
..+++++.+++.+.+..++++|+||.+.....+.|.+++..|.+.
T Consensus 120 ~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~r~~q~~~l~~~ 164 (266)
T 3teb_A 120 ISARRIVSITINYEGQDIEFYSCHMNLPNCETEDMGKNIQTILNR 164 (266)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEECCCTTCTTCCHHHHHHHHHTS
T ss_pred cccceEEEEEEEeCCeEEEEEEecCCCccCChHHHHHHHHHHHHH
Confidence 456899999999999999999999998865455677777777654
No 194
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.11 E-value=3.7e-10 Score=130.54 Aligned_cols=134 Identities=16% Similarity=0.126 Sum_probs=84.5
Q ss_pred eceEEEEEEEEeCCCCCCc-----hhhcccccCCCCCcceEEEEeeccccccchhhhhhhhhhccCCCCcchhhHHHHHh
Q 001123 550 ENLKILAGTWNVGQGRASQ-----DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIG 624 (1149)
Q Consensus 550 ~~~~i~v~TWNv~~~~~~~-----~~l~~wl~~~~~~~Di~viGlQEi~~~~~~~~~~~~ke~~~~~~~~~~~~W~~~i~ 624 (1149)
...++.|.||||+|..... ..+.+||.. .+||| |+|||+.-. +...|.
T Consensus 116 ~~~~lkVlSWNI~Gl~~~~~~~R~~~I~~~I~~--~~PDI--V~LQEv~~~-----------------------~~~~l~ 168 (362)
T 4gew_A 116 KGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKN--VNPDI--LFLQEVVDR-----------------------DLAPID 168 (362)
T ss_dssp TTCEEEEEEEECCTTCCTTHHHHHHHHHHHHHH--HCCSE--EEEEEECST-----------------------TCHHHH
T ss_pred CCCeEEEEEEEeCCCCCcCHHHHHHHHHHHHHH--cCCCE--EEEEcCChh-----------------------HhHHHH
Confidence 4468999999998754322 346677763 45785 789998421 111233
Q ss_pred cccCCCCcEEEEeeeccceeeeeeeeeccccCccceeEeeeEeecccccccCcceeEEEEEEeceEEEEeeecccccchh
Q 001123 625 KILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEA 704 (1149)
Q Consensus 625 ~~L~~~~~y~~v~s~qL~Gl~l~vfvr~~l~~~i~~v~~~~v~tG~~g~~gNKGaV~ir~~~~~t~lcFVn~HLaA~~~~ 704 (1149)
+.+. .|......+-.+-..+||.|+.+ ..+....... .+.....+++.+++.+.+..|+++|.||.+....
T Consensus 169 ~~~~---~y~~~~~~~~~~~G~aIlsk~~i----~~~~~~~~~~--~~~~~~r~~l~~~i~~~g~~l~v~ntHL~s~~~~ 239 (362)
T 4gew_A 169 KLQS---LYKIYYSNKGCQYYTAILVSKMF----DVEKHDVIHF--QNSGMYRTLQILEGSIGGLKVFLLNTHLESTREH 239 (362)
T ss_dssp GGGG---TEEEEESSTTSSSEEEEEEETTE----EEEEEEEEEC--TTCSSCCEEEEEEEEETTEEEEEEEEECCCSGGG
T ss_pred HhcC---CceEEeCCCCCCceEEEEEeccC----ccccccccCC--CCCcccceEEEEEEEECCEEEEEEEecCCccccc
Confidence 3332 24444444444555667777533 2222222221 1222346788889999999999999999998888
Q ss_pred HHHHHHHHHHHHHhc
Q 001123 705 VNRRNADFDHVYRTM 719 (1149)
Q Consensus 705 ~~~Rn~d~~~I~~~l 719 (1149)
..+|.+.+..+...+
T Consensus 240 ~~~R~~Q~~~l~~~~ 254 (362)
T 4gew_A 240 RPQRCAQFGFCMDKV 254 (362)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHh
Confidence 888998888877653
No 195
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.10 E-value=2.7e-09 Score=119.36 Aligned_cols=228 Identities=9% Similarity=0.003 Sum_probs=148.1
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEE-EEECCCcEEEEeCC
Q 001123 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLW-SGSEGGGIKIWPWE 270 (1149)
Q Consensus 192 ~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~-SGS~DgTIRVWdl~ 270 (1149)
..|.+++|++++..+++.+.++.++.|.- .....+.+|...+.+++|+++|+|+ +++.++.|.+||.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~ 74 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITA-----------EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPE 74 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEEC-----------EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTT
T ss_pred cccceeeecCCccceeEEeecccCccccc-----------ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCC
Confidence 45678889999888888899999999932 2255677888888999999999975 78889999999997
Q ss_pred CcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecC-----CceEEEEcCCccEE
Q 001123 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-----LSFALWDARTRELL 345 (1149)
Q Consensus 271 t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd-----~tIrLWD~~TG~~L 345 (1149)
+++....... ....+..++.++++..+++... ..|.+||..+++..
T Consensus 75 ~~~~~~~~~~-----------------------------~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~ 125 (333)
T 2dg1_A 75 TKEIKRPFVS-----------------------------HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ 125 (333)
T ss_dssp TCCEEEEEEC-----------------------------SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred CCcEEEEeeC-----------------------------CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE
Confidence 6542211000 1134566777777665555433 36888887766533
Q ss_pred EEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEE
Q 001123 346 KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEAL 425 (1149)
Q Consensus 346 ~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~av 425 (1149)
..+... .....+..+
T Consensus 126 ~~~~~~-----------------------------------------------------------------~~~~~~~~i 140 (333)
T 2dg1_A 126 DIIEDL-----------------------------------------------------------------STAYCIDDM 140 (333)
T ss_dssp EEECSS-----------------------------------------------------------------SSCCCEEEE
T ss_pred EEEccC-----------------------------------------------------------------ccCCcccce
Confidence 221100 011235567
Q ss_pred EEcCCCcEEEEeCC-------CeEEEEeCCCCeeEeeecCCccEEEEEe--cCCEEEEe-ecCcEEEEEeC--CCceeee
Q 001123 426 TTSIDGMIWTGGAN-------GLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVG-YMNGIVQVLDL--EGNLLGG 493 (1149)
Q Consensus 426 a~s~Dg~laSgs~D-------gtIrlWD~tG~~l~tl~gH~~~V~sls~--dG~~LaSG-s~DGtIrlWD~--~G~~l~~ 493 (1149)
+++++|.++.++.. +.|..||..+..+..+..+...++.+++ +|++|+.+ +.++.|++||. +|+.+..
T Consensus 141 ~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~ 220 (333)
T 2dg1_A 141 VFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQP 220 (333)
T ss_dssp EECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEE
T ss_pred EECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCccc
Confidence 78888887766552 5666677654333334333345666654 68877655 46789999997 4543322
Q ss_pred --------eeccCCCeEEEEe--cCCeEEeecCCCceeeeec
Q 001123 494 --------WVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 494 --------l~gH~~~V~sLa~--Dg~~LaSgS~DgtIRlWdl 525 (1149)
+.+| ..+..++. +|++.++...++.|++||.
T Consensus 221 ~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 221 FGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp EEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred ccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence 2233 35666764 6777777777899999985
No 196
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=99.09 E-value=3.2e-10 Score=123.47 Aligned_cols=127 Identities=15% Similarity=0.134 Sum_probs=76.0
Q ss_pred EEEEEEeCCCCCCchhhcccccCCCCCcceEEEEeeccccccchhhhhhhhhhccCCCCcchhhHHHHHhcccCCCCcEE
Q 001123 555 LAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFE 634 (1149)
Q Consensus 555 ~v~TWNv~~~~~~~~~l~~wl~~~~~~~Di~viGlQEi~~~~~~~~~~~~ke~~~~~~~~~~~~W~~~i~~~L~~~~~y~ 634 (1149)
.|+||||++.....+.+.++|.. .+|| ||+|||+......+ ..+.+. . .++.|.
T Consensus 2 rv~t~Nv~~~~~~~~~i~~~i~~--~~~D--ii~LQE~~~~~~~~-------------------~~~~l~-~--~gy~~~ 55 (268)
T 1ako_A 2 KFVSFNINGLRARPHQLEAIVEK--HQPD--VIGLQETKVHDDMF-------------------PLEEVA-K--LGYNVF 55 (268)
T ss_dssp EEEEEECSCGGGCHHHHHHHHHH--HCCS--EEEEECCCCCGGGC-------------------CHHHHH-H--TTCEEE
T ss_pred EEEEEehhHHHHHHHHHHHHHHH--cCCC--EEEEEeccCChhhC-------------------CHhHhc-c--CCCcEE
Confidence 58999999765545567777753 4577 57899996532100 011121 1 234443
Q ss_pred EEeeeccceeeeeeeeeccccCccceeEeeeEeecccc--cccCcceeEEEEEEeceEEEEeeecccccch-----hHHH
Q 001123 635 RVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGR--AIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE-----AVNR 707 (1149)
Q Consensus 635 ~v~s~qL~Gl~l~vfvr~~l~~~i~~v~~~~v~tG~~g--~~gNKGaV~ir~~~~~t~lcFVn~HLaA~~~-----~~~~ 707 (1149)
... +-.+--+++|.|..+. .+. .++.+ ...+++.+.+++.+.+..++++|+||.+... ..+.
T Consensus 56 ~~~--~~~~~G~ailsr~~~~----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~ 124 (268)
T 1ako_A 56 YHG--QKGHYGVALLTKETPI----AVR-----RGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPA 124 (268)
T ss_dssp EEE--ETTEEEEEEEESSCCS----EEE-----ESSTTCCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHH
T ss_pred EeC--CCCcceEEEEEecCcc----eee-----eCCCCcccccCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHH
Confidence 332 2233345566666442 222 23322 1346888999999988899999999998753 4456
Q ss_pred HHHHHHHHHHh
Q 001123 708 RNADFDHVYRT 718 (1149)
Q Consensus 708 Rn~d~~~I~~~ 718 (1149)
|.+.+..|.+.
T Consensus 125 r~~~~~~l~~~ 135 (268)
T 1ako_A 125 KAQFYQNLQNY 135 (268)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777666554
No 197
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.07 E-value=2.6e-08 Score=107.45 Aligned_cols=231 Identities=10% Similarity=-0.046 Sum_probs=142.9
Q ss_pred ceEEEEEcCCCCEEE-EEeCCCeEEEEECCCCCCCCCCCccceEEe-ecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCC
Q 001123 193 SVMCMVGDEASGVVW-SGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (1149)
Q Consensus 193 ~V~~lafs~dg~~La-SGS~DGtIRvWdl~~g~~~~~~~~~~~~~l-~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~ 270 (1149)
...+++++++|.+.+ +.+.++.|.+|+..++. ...+ .++...+.+|+++++|+|+.+..++.|.+||..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~---------~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~ 95 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG---------TTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAG 95 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC--------------EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTT
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcc---------cceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCC
Confidence 677899999999777 55788999999976543 1111 234456889999999997655558899999986
Q ss_pred CcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEe-cCCceEEEEcCCccEEEEEe
Q 001123 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVFN 349 (1149)
Q Consensus 271 t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sa-sd~tIrLWD~~TG~~L~~l~ 349 (1149)
+.... .+... .......++.++++...++. .++.|.+||..+......
T Consensus 96 ~~~~~-~~~~~----------------------------~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~-- 144 (270)
T 1rwi_B 96 SNNQT-VLPFD----------------------------GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL-- 144 (270)
T ss_dssp CSCCE-ECCCC----------------------------SCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC--
T ss_pred CceEe-eeecC----------------------------CcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee--
Confidence 53211 11000 00234556676665533332 235677775432211000
Q ss_pred cCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcC
Q 001123 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (1149)
Q Consensus 350 ~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~ 429 (1149)
.......+..+++++
T Consensus 145 -----------------------------------------------------------------~~~~~~~p~~i~~~~ 159 (270)
T 1rwi_B 145 -----------------------------------------------------------------PFTGLNDPDGVAVDN 159 (270)
T ss_dssp -----------------------------------------------------------------CCCSCCSCCCEEECT
T ss_pred -----------------------------------------------------------------ccccCCCceeEEEeC
Confidence 000011234566788
Q ss_pred CCcEEEEe-CCCeEEEEeCCCCee-EeeecCCccEEEEEec--CCEEEEeecCcEEEEEeCCCceeeeee-ccCCCeEEE
Q 001123 430 DGMIWTGG-ANGLLLQWDPNGNRL-QDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLEGNLLGGWV-AHSSPVIKM 504 (1149)
Q Consensus 430 Dg~laSgs-~DgtIrlWD~tG~~l-~tl~gH~~~V~sls~d--G~~LaSGs~DGtIrlWD~~G~~l~~l~-gH~~~V~sL 504 (1149)
+|.++.+. .++.|.+||..+... .....+...+..|+++ |...++...++.|.+||.++....... .+...+.++
T Consensus 160 ~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i 239 (270)
T 1rwi_B 160 SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAV 239 (270)
T ss_dssp TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEE
T ss_pred CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeE
Confidence 88876554 468999999965433 3333333567788774 655555556889999998865433332 344667888
Q ss_pred Ee--cCCeEEeecCCCceeeeeccCC
Q 001123 505 AV--GAGYIFTLANHGGIRGWNVTSP 528 (1149)
Q Consensus 505 a~--Dg~~LaSgS~DgtIRlWdl~sp 528 (1149)
+. +|+..++.+.+++|+++++..+
T Consensus 240 ~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 240 AVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred EECCCCCEEEEECCCCEEEEEcCCCc
Confidence 74 7888888889999999997543
No 198
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.06 E-value=2.3e-08 Score=110.84 Aligned_cols=212 Identities=11% Similarity=0.046 Sum_probs=139.7
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCC-CCEEEEEEeCCCcEEEEECCCcEEEEeCCCcceeeecCC
Q 001123 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKP 280 (1149)
Q Consensus 202 dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~-~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~~~~~l~~ 280 (1149)
.+++|++++.|+.|.+||.++|+ .+.++..|. ..+.+++++|+|+++. +.++.|+.||. +++....+..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~--------~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~ 73 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKE--------IVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAA 73 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTE--------EEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEEC
T ss_pred CCcEEEeeCCCCEEEEEECCCCe--------EEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcC
Confidence 46899999999999999998875 467777776 5789999999999544 55788999998 6654443322
Q ss_pred CcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecC--CceEEEEcCCccEEEEEecCCceeeEE
Q 001123 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRV 358 (1149)
Q Consensus 281 ~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd--~tIrLWD~~TG~~L~~l~~~g~~~~~v 358 (1149)
... ..+..+...+++..+++.+. ..+..+|. +|+.+..+......
T Consensus 74 ~~~----------------------------~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~---- 120 (276)
T 3no2_A 74 PAG----------------------------CEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGI---- 120 (276)
T ss_dssp CTT----------------------------CEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSC----
T ss_pred CCC----------------------------ccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCC----
Confidence 100 11223334456666655433 34555564 67766655422110
Q ss_pred eeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc-EEEEe
Q 001123 359 DMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG 437 (1149)
Q Consensus 359 ~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~-laSgs 437 (1149)
. .+......+...++|. +++.+
T Consensus 121 ---------------------~------------------------------------~~~~~~~~v~~~~~G~~lv~~~ 143 (276)
T 3no2_A 121 ---------------------E------------------------------------RPHAQFRQINKNKKGNYLVPLF 143 (276)
T ss_dssp ---------------------S------------------------------------SGGGSCSCCEECTTSCEEEEET
T ss_pred ---------------------C------------------------------------cccccccCceECCCCCEEEEec
Confidence 0 0000011123556666 56777
Q ss_pred CCCeEEEEeCCCCeeEeeecCCccEEEEE--ecCCEEEEeecCcEEEEEeCC-CceeeeeeccC------CCeEEEE--e
Q 001123 438 ANGLLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS------SPVIKMA--V 506 (1149)
Q Consensus 438 ~DgtIrlWD~tG~~l~tl~gH~~~V~sls--~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~------~~V~sLa--~ 506 (1149)
.++.|..||.+|+.+-++..+. .+.++. .+|..|++++.++.|..+|.+ |+.+..+..+. ..+.+++ +
T Consensus 144 ~~~~v~~~d~~G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~ 222 (276)
T 3no2_A 144 ATSEVREIAPNGQLLNSVKLSG-TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQ 222 (276)
T ss_dssp TTTEEEEECTTSCEEEEEECSS-CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECT
T ss_pred CCCEEEEECCCCCEEEEEECCC-CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcC
Confidence 8999999999999998887653 333343 368999999989999999987 99988876543 1255555 4
Q ss_pred cCCeEEee
Q 001123 507 GAGYIFTL 514 (1149)
Q Consensus 507 Dg~~LaSg 514 (1149)
+|+.+++.
T Consensus 223 ~G~i~v~~ 230 (276)
T 3no2_A 223 NGGLYICN 230 (276)
T ss_dssp TSCEEEEE
T ss_pred CCCEEEEe
Confidence 77777765
No 199
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.05 E-value=3e-08 Score=112.13 Aligned_cols=257 Identities=11% Similarity=-0.034 Sum_probs=155.4
Q ss_pred CCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCC
Q 001123 150 ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDD 229 (1149)
Q Consensus 150 D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~ 229 (1149)
+++|.+||.+++...... ..+. ...+ + ......++++ ++++.++...+++|.+||..+++
T Consensus 16 ~~~l~~~d~~t~~~~~~i-~~~~-------n~~~----l--g~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~----- 75 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEV-FYRA-------NGFK----L--GDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFK----- 75 (328)
T ss_dssp CBEEEEEETTTTEEECSH-HHHH-------HSSC----C--BSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCC-----
T ss_pred CceEEEEECCCCEEhhhh-Hhhh-------cCcc----c--CccceEEEEE-CCEEEEEEcCCCEEEEEECcccE-----
Confidence 778999999987644320 0000 0000 0 1234567774 45666777778999999999865
Q ss_pred CccceEEeecCCCCEEEEEEeCCCcEEEEE-CCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceee
Q 001123 230 GFGEVLSWQAHRGPVLSLCISSYGDLWSGS-EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSS 308 (1149)
Q Consensus 230 ~~~~~~~l~GH~~~VtsVafSpdG~L~SGS-~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~ 308 (1149)
.+.++. .......|+++++|+|+.+. .+++|.+||+++++....+..... .+..
T Consensus 76 ---~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~--------------~~~~------- 130 (328)
T 3dsm_A 76 ---EVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDM--------------DMES------- 130 (328)
T ss_dssp ---EEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC--------------CTTT-------
T ss_pred ---EEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc--------------cccC-------
Confidence 245554 34678899999999876554 899999999987653322210000 0000
Q ss_pred eecCCeEEEEEcCCCCEEEEec---CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCcc
Q 001123 309 ILTSDIKNLLSDHSRAKVWSAG---FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKA 385 (1149)
Q Consensus 309 ~~~~dv~~las~~~~~~v~Sas---d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~ 385 (1149)
.....++. ++.+++.+. +++|.+||+.+++.++.+.....
T Consensus 131 ---~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~-------------------------------- 173 (328)
T 3dsm_A 131 ---GSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQ-------------------------------- 173 (328)
T ss_dssp ---CBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSC--------------------------------
T ss_pred ---CCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCC--------------------------------
Confidence 01112223 234444432 57899999999887765532110
Q ss_pred ceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCcEEEEeCC-----------CeEEEEeC-CCCeeE
Q 001123 386 QSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGAN-----------GLLLQWDP-NGNRLQ 453 (1149)
Q Consensus 386 ~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~laSgs~D-----------gtIrlWD~-tG~~l~ 453 (1149)
...++++++|.++.++.. +.|.+||. +++.+.
T Consensus 174 ------------------------------------p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~ 217 (328)
T 3dsm_A 174 ------------------------------------PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK 217 (328)
T ss_dssp ------------------------------------BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE
T ss_pred ------------------------------------ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE
Confidence 012335677776554432 68999999 677776
Q ss_pred eeecC-CccEEEEEe--cCCEEEEeecCcEEEEEeCC-Cceee-e-eeccCCCeEEEEe---cCCeEEee----cCCCce
Q 001123 454 DFQYL-PFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLG-G-WVAHSSPVIKMAV---GAGYIFTL----ANHGGI 520 (1149)
Q Consensus 454 tl~gH-~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~l~-~-l~gH~~~V~sLa~---Dg~~LaSg----S~DgtI 520 (1149)
++... ......+++ +|++|+++.. +|.+||.+ +++.. . +..+......++. +++..++. ..+++|
T Consensus 218 ~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V 295 (328)
T 3dsm_A 218 QFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV 295 (328)
T ss_dssp EEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred EEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence 66532 124666665 5899988765 89999976 55432 1 2222456777774 34445555 578999
Q ss_pred eeeecc
Q 001123 521 RGWNVT 526 (1149)
Q Consensus 521 RlWdl~ 526 (1149)
.+||..
T Consensus 296 ~v~d~~ 301 (328)
T 3dsm_A 296 YRYSPQ 301 (328)
T ss_dssp EEECTT
T ss_pred EEECCC
Confidence 999964
No 200
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.04 E-value=4.4e-08 Score=107.97 Aligned_cols=217 Identities=13% Similarity=0.136 Sum_probs=135.0
Q ss_pred EEEe-CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 001123 145 LWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNAR 223 (1149)
Q Consensus 145 l~ag-~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g 223 (1149)
+|++ .+++|.+||.+++ ... +. .+ ...+.+++++++|+++++.+.++.|.+||..++
T Consensus 43 ~~~~~~~~~i~~~~~~~~--~~~-----------------~~--~~-~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g 100 (296)
T 3e5z_A 43 IFSDVRQNRTWAWSDDGQ--LSP-----------------EM--HP-SHHQNGHCLNKQGHLIACSHGLRRLERQREPGG 100 (296)
T ss_dssp EEEEGGGTEEEEEETTSC--EEE-----------------EE--SS-CSSEEEEEECTTCCEEEEETTTTEEEEECSTTC
T ss_pred EEEeCCCCEEEEEECCCC--eEE-----------------EE--CC-CCCcceeeECCCCcEEEEecCCCeEEEEcCCCC
Confidence 5665 4778999998765 221 11 12 456889999999999988888899999999776
Q ss_pred CCCCCCCccceEE-eecC-CCCEEEEEEeCCCcEE-EEECCC---------------cEEEEeCCCcceeeecCCCccee
Q 001123 224 LLDSDDGFGEVLS-WQAH-RGPVLSLCISSYGDLW-SGSEGG---------------GIKIWPWEAIEKALSLKPEERHT 285 (1149)
Q Consensus 224 ~~~~~~~~~~~~~-l~GH-~~~VtsVafSpdG~L~-SGS~Dg---------------TIRVWdl~t~~~~~~l~~~~~~~ 285 (1149)
.. ..... ..+. ...+++++++|+|+|+ |.+.+| .-+||.+........+.
T Consensus 101 ~~------~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~------ 168 (296)
T 3e5z_A 101 EW------ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPI------ 168 (296)
T ss_dssp CE------EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEE------
T ss_pred cE------EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEee------
Confidence 52 11110 1111 2457789999999965 522111 22455543211111000
Q ss_pred eEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcC-CccE---EEEEecCCceeeEEee
Q 001123 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDAR-TREL---LKVFNIDGQIENRVDM 360 (1149)
Q Consensus 286 ~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~-TG~~---L~~l~~~g~~~~~v~~ 360 (1149)
.. ......+++++++..+++.. ++.|.+||+. +|++ ...+
T Consensus 169 -------------~~----------~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~------------ 213 (296)
T 3e5z_A 169 -------------RD----------RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF------------ 213 (296)
T ss_dssp -------------CC----------CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE------------
T ss_pred -------------cC----------CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe------------
Confidence 00 02234567777777665544 4679999976 4443 1111
Q ss_pred ccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCcEEEEeCCC
Q 001123 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANG 440 (1149)
Q Consensus 361 S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~laSgs~Dg 440 (1149)
.. +...+..++++++|.||.+. ++
T Consensus 214 ------------------~~-------------------------------------~~~~p~~i~~d~~G~l~v~~-~~ 237 (296)
T 3e5z_A 214 ------------------TV-------------------------------------EPGKTDGLRVDAGGLIWASA-GD 237 (296)
T ss_dssp ------------------CC-------------------------------------SSSCCCSEEEBTTSCEEEEE-TT
T ss_pred ------------------eC-------------------------------------CCCCCCeEEECCCCCEEEEc-CC
Confidence 00 00112245688899988777 88
Q ss_pred eEEEEeCCCCeeEeeecCCccEEEEEe---cCCEEEEeecCcEEEEEeCCC
Q 001123 441 LLLQWDPNGNRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLEG 488 (1149)
Q Consensus 441 tIrlWD~tG~~l~tl~gH~~~V~sls~---dG~~LaSGs~DGtIrlWD~~G 488 (1149)
.|.+||.+|+.+..+..+.. +.++++ +|+.|++++.++.. -++.+.
T Consensus 238 ~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~-~~~~~~ 286 (296)
T 3e5z_A 238 GVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFW-SIETNV 286 (296)
T ss_dssp EEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEE-EEECSC
T ss_pred eEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEE-EEEccc
Confidence 99999999999999888777 777765 57899999987643 345443
No 201
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.01 E-value=1.6e-06 Score=94.28 Aligned_cols=265 Identities=11% Similarity=0.073 Sum_probs=154.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEE-CCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS-EGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS-~DgTIRVWdl 269 (1149)
...+.+++++++|.+.++...++.|.+||.. +.. ....+..+...+.+|+++++|.||-+. .++.|..|+.
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 85 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-------TEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITK 85 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-------EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred CCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-------EEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECC
Confidence 3568899999999988877778999999987 441 111222355789999999999976544 4788999997
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEE
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l 348 (1149)
+.......+. . .......++.++++...++.. ++.|.+||. +|+.....
T Consensus 86 ~g~~~~~~~~-------------------~----------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~ 135 (299)
T 2z2n_A 86 KGIIKEYTLP-------------------N----------PDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYE 135 (299)
T ss_dssp TSCEEEEECS-------------------S----------TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEE
T ss_pred CCcEEEEeCC-------------------C----------cCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEec
Confidence 5211111000 0 012345667776655444433 467999998 66654322
Q ss_pred ec-CCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeec-CCcEEEEeeccc-----ccCCCCc
Q 001123 349 NI-DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA-ADAVRRVAAKGG-----FGDDNRR 421 (1149)
Q Consensus 349 ~~-~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~-~d~v~rv~~~g~-----~~~~~~~ 421 (1149)
.. .......+.+.+. +...++.. ...+.++...+. +......
T Consensus 136 ~~~~~~~~~~i~~~~~-------------------------------g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~ 184 (299)
T 2z2n_A 136 LPNKGSYPSFITLGSD-------------------------------NALWFTENQNNAIGRITESGDITEFKIPTPASG 184 (299)
T ss_dssp CSSTTCCEEEEEECTT-------------------------------SCEEEEETTTTEEEEECTTCCEEEEECSSTTCC
T ss_pred CCCCCCCCceEEEcCC-------------------------------CCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCc
Confidence 11 1122222222221 11111111 111222211110 1223345
Q ss_pred eEEEEEcCCCcEEEEe-CCCeEEEEeCCCCeeEe-eecCCccEEEEEec--CCEEEEeecCcEEEEEeCCCceeee-eec
Q 001123 422 TEALTTSIDGMIWTGG-ANGLLLQWDPNGNRLQD-FQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLEGNLLGG-WVA 496 (1149)
Q Consensus 422 V~ava~s~Dg~laSgs-~DgtIrlWD~tG~~l~t-l~gH~~~V~sls~d--G~~LaSGs~DGtIrlWD~~G~~l~~-l~g 496 (1149)
+..+++.++|.++.+. .++.|.+||.+|+.... +..+...+.+++++ |+..++...++.|.+||.+|+.... +.+
T Consensus 185 ~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~ 264 (299)
T 2z2n_A 185 PVGITKGNDDALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSNNIIEEYPIQI 264 (299)
T ss_dssp EEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETTTEEEEEECSS
T ss_pred ceeEEECCCCCEEEEccCCceEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCCCceEEEeCCC
Confidence 7788999999987665 47899999997764332 23345678888774 6644444467899999987754322 345
Q ss_pred cCCCeEEEEe-cCCeEEeecCCCceeeeec
Q 001123 497 HSSPVIKMAV-GAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 497 H~~~V~sLa~-Dg~~LaSgS~DgtIRlWdl 525 (1149)
+...+.+++. +|++.++.+ .+.|..++.
T Consensus 265 ~~~~~~~i~~~~g~l~v~~~-~~~l~~~~~ 293 (299)
T 2z2n_A 265 KSAEPHGICFDGETIWFAME-CDKIGKLTL 293 (299)
T ss_dssp SSCCEEEEEECSSCEEEEET-TTEEEEEEE
T ss_pred CCCccceEEecCCCEEEEec-CCcEEEEEc
Confidence 5667887774 666666555 445555554
No 202
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.01 E-value=1.1e-07 Score=108.82 Aligned_cols=332 Identities=11% Similarity=0.097 Sum_probs=177.6
Q ss_pred CCCCcccccccee------EEEEEeeCCeEEEeC-CCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCce
Q 001123 122 KPHPLRETQIGCF------LRTIVCTEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSV 194 (1149)
Q Consensus 122 ~~~pl~e~~~~~~------l~~l~~~~~~l~ag~-D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V 194 (1149)
.+.++|....+.. ..+.+..++.+|++. ++.|..+|.++|+..... .. +... .... .. ...+
T Consensus 27 ~~~~~W~~~~~~~~~~~~~~~~p~v~~~~v~~~~~~g~v~a~d~~tG~~~W~~---~~----~~~~--~~~~-~~-~~~~ 95 (376)
T 3q7m_A 27 TPTTAWSTSVGSGIGNFYSNLHPALADNVVYAADRAGLVKALNADDGKEIWSV---SL----AEKD--GWFS-KE-PALL 95 (376)
T ss_dssp CCEEEEEECCTTTTTTSCCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE---EC----CC-----CCS-CC-CCCE
T ss_pred cceEEeEEecCCCccccceeeccEEECCEEEEEcCCCeEEEEEccCCceeeee---cC----cccc--cccc-cc-Cccc
Confidence 3456666554421 124455688888765 778999999988865430 00 0000 0000 00 1112
Q ss_pred -EEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcc
Q 001123 195 -MCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIE 273 (1149)
Q Consensus 195 -~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~ 273 (1149)
..++. ++..|+.++.|+.|..+|..+|+ ...+...+.....+.++ .++.++.++.|+.|..+|..+++
T Consensus 96 ~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~--------~~W~~~~~~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~ 164 (376)
T 3q7m_A 96 SGGVTV--SGGHVYIGSEKAQVYALNTSDGT--------VAWQTKVAGEALSRPVV-SDGLVLIHTSNGQLQALNEADGA 164 (376)
T ss_dssp EEEEEE--ETTEEEEEETTSEEEEEETTTCC--------EEEEEECSSCCCSCCEE-ETTEEEEECTTSEEEEEETTTCC
T ss_pred ccCceE--eCCEEEEEcCCCEEEEEECCCCC--------EEEEEeCCCceEcCCEE-ECCEEEEEcCCCeEEEEECCCCc
Confidence 12222 45678889999999999999875 23343333222222222 35678899999999999998887
Q ss_pred eeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCC
Q 001123 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDG 352 (1149)
Q Consensus 274 ~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g 352 (1149)
............ ... +. ... +.. +..++.+. ++.+..+|+.+|+.+..+....
T Consensus 165 ~~W~~~~~~~~~----------~~~------~~----~~~----~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~ 218 (376)
T 3q7m_A 165 VKWTVNLDMPSL----------SLR------GE----SAP----TTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQ 218 (376)
T ss_dssp EEEEEECCC---------------C------CC----CCC----EEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC
T ss_pred EEEEEeCCCCce----------eec------CC----CCc----EEE--CCEEEEEcCCCEEEEEECCCCcEEEEEeccc
Confidence 554332111000 000 00 000 111 23444443 5679999999999988775432
Q ss_pred ceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCC-cEEEEee-cccc--cCCCCceEEEEEc
Q 001123 353 QIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAA-KGGF--GDDNRRTEALTTS 428 (1149)
Q Consensus 353 ~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d-~v~rv~~-~g~~--~~~~~~V~ava~s 428 (1149)
.... .......+..... ++. +..++.+..+ .+..+.. .+.. .........++.
T Consensus 219 ~~~~-~~~~~~~~~~~~p-----~~~----------------~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~- 275 (376)
T 3q7m_A 219 ATGS-TEIDRLSDVDTTP-----VVV----------------NGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIV- 275 (376)
T ss_dssp ------------CCCCCC-----EEE----------------TTEEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEE-
T ss_pred CCCC-cccccccccCCCc-----EEE----------------CCEEEEEecCcEEEEEECCCCcEEeeccCCCCCCceE-
Confidence 1100 0000000000000 000 0111111111 1111110 0000 000111223333
Q ss_pred CCCcEEEEeCCCeEEEEeC-CCCeeEeeec-CCccEEEEEecCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEE-E
Q 001123 429 IDGMIWTGGANGLLLQWDP-NGNRLQDFQY-LPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK-M 504 (1149)
Q Consensus 429 ~Dg~laSgs~DgtIrlWD~-tG~~l~tl~g-H~~~V~sls~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~s-L 504 (1149)
.++.++.++.++.|..+|. +|+.+-.... ....+.+....+..|+.++.+|.|.++|.+ |+.+.....+...+.+ .
T Consensus 276 ~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~ 355 (376)
T 3q7m_A 276 DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEP 355 (376)
T ss_dssp ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCC
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCC
Confidence 3677889999999999999 8987765542 222333445568899999999999999965 8887776654444443 3
Q ss_pred EecCCeEEeecCCCceeeee
Q 001123 505 AVGAGYIFTLANHGGIRGWN 524 (1149)
Q Consensus 505 a~Dg~~LaSgS~DgtIRlWd 524 (1149)
...+..|+.++.||.|..|+
T Consensus 356 ~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 356 VAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEETTEEEEEBTTSCEEEEE
T ss_pred EEECCEEEEEeCCCEEEEEe
Confidence 34567788889999999886
No 203
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.01 E-value=7.5e-08 Score=108.82 Aligned_cols=235 Identities=11% Similarity=0.009 Sum_probs=145.7
Q ss_pred eeEEEEEeeCCeEEEe--CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEe
Q 001123 133 CFLRTIVCTEEQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (1149)
Q Consensus 133 ~~l~~l~~~~~~l~ag--~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS 210 (1149)
...+.++..++++|.. .+++|.+||.++++.... +.+......+++++++++.++..
T Consensus 44 ~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~---------------------i~~~~~p~~i~~~~~g~lyv~~~ 102 (328)
T 3dsm_A 44 DVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGR---------------------ITGFTSPRYIHFLSDEKAYVTQI 102 (328)
T ss_dssp SCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEE---------------------EECCSSEEEEEEEETTEEEEEEB
T ss_pred ccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEE---------------------cCCCCCCcEEEEeCCCeEEEEEC
Confidence 3445666788889874 367899999998876543 11134567899999986666665
Q ss_pred CCCeEEEEECCCCCCCCCCCccceEEeecCC-----CCEEEEEEeCCCcEEEEE--CCCcEEEEeCCCcceeeecCCCcc
Q 001123 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHR-----GPVLSLCISSYGDLWSGS--EGGGIKIWPWEAIEKALSLKPEER 283 (1149)
Q Consensus 211 ~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~-----~~VtsVafSpdG~L~SGS--~DgTIRVWdl~t~~~~~~l~~~~~ 283 (1149)
.++.|.+||+.++.. ..++.... .....|++ .+++|+.+. .+++|.+||+++++....+...
T Consensus 103 ~~~~v~~iD~~t~~~--------~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-- 171 (328)
T 3dsm_A 103 WDYRIFIINPKTYEI--------TGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-- 171 (328)
T ss_dssp SCSEEEEEETTTTEE--------EEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS--
T ss_pred CCCeEEEEECCCCeE--------EEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC--
Confidence 899999999988642 33333222 24556777 456676555 4899999999876533222100
Q ss_pred eeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecC-----------CceEEEEcCCccEEEEEecCC
Q 001123 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-----------LSFALWDARTRELLKVFNIDG 352 (1149)
Q Consensus 284 ~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd-----------~tIrLWD~~TG~~L~~l~~~g 352 (1149)
.....+++++++..++++.. ..|.+||..++++.+.+....
T Consensus 172 ----------------------------~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~ 223 (328)
T 3dsm_A 172 ----------------------------IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL 223 (328)
T ss_dssp ----------------------------SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT
T ss_pred ----------------------------CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC
Confidence 01112334454443333322 468899988887655432100
Q ss_pred ceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCc
Q 001123 353 QIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM 432 (1149)
Q Consensus 353 ~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~ 432 (1149)
......++++||+.
T Consensus 224 ------------------------------------------------------------------g~~p~~la~~~d~~ 237 (328)
T 3dsm_A 224 ------------------------------------------------------------------GDWPSEVQLNGTRD 237 (328)
T ss_dssp ------------------------------------------------------------------TCCCEEEEECTTSC
T ss_pred ------------------------------------------------------------------CCCceeEEEecCCC
Confidence 01234567888765
Q ss_pred -EEEEeCCCeEEEEeC-CCCeeE--eeecCCccEEEEEe--cCCEEEEe-----ecCcEEEEEeCCCceeeeee
Q 001123 433 -IWTGGANGLLLQWDP-NGNRLQ--DFQYLPFAVQCLCT--FGSQIWVG-----YMNGIVQVLDLEGNLLGGWV 495 (1149)
Q Consensus 433 -laSgs~DgtIrlWD~-tG~~l~--tl~gH~~~V~sls~--dG~~LaSG-----s~DGtIrlWD~~G~~l~~l~ 495 (1149)
++.+.. +|.+||. +++... .+..+......+++ ++.+|+++ ..+++|.+||.+|+++.++.
T Consensus 238 ~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~ 309 (328)
T 3dsm_A 238 TLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFY 309 (328)
T ss_dssp EEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEE
T ss_pred EEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEE
Confidence 555543 8999999 666532 12222345677766 35555555 46899999999898887764
No 204
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.01 E-value=1.8e-08 Score=125.57 Aligned_cols=230 Identities=9% Similarity=-0.109 Sum_probs=132.1
Q ss_pred CCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCe-------------EE
Q 001123 150 ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGR-------------IM 216 (1149)
Q Consensus 150 D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGt-------------IR 216 (1149)
+.+|++||++++..... ..+.+ .....++|+|||+.|+.++.|.. |+
T Consensus 146 ~~~i~v~dl~tg~~~~~-------------------~~~~~-~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~ 205 (695)
T 2bkl_A 146 EAVLHVIDVDSGEWSKV-------------------DVIEG-GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIR 205 (695)
T ss_dssp CCEEEEEETTTCCBCSS-------------------CCBSC-CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEE
T ss_pred eEEEEEEECCCCCCcCC-------------------cccCc-ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEE
Confidence 45799999998775411 00110 11146899999999999999887 99
Q ss_pred EEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCC----cEEEEeCCCcceeeecCCCcceeeEEEee
Q 001123 217 CWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGG----GIKIWPWEAIEKALSLKPEERHTAALIVE 291 (1149)
Q Consensus 217 vWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~Dg----TIRVWdl~t~~~~~~l~~~~~~~~a~~~~ 291 (1149)
+|++.++.. .-..+....+|...+.+++|||||+ |+.++.++ .|++|+..+++. ..+....
T Consensus 206 ~~~l~t~~~----~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~--------- 271 (695)
T 2bkl_A 206 YHTLGTEPS----KDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGV--------- 271 (695)
T ss_dssp EEETTSCGG----GCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECS---------
T ss_pred EEECCCCch----hceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCC---------
Confidence 999987651 0012233345777899999999998 76555554 566665433321 1111100
Q ss_pred eccccccccccccceeeeecCCeEEEEEcCCCCEEEEec----CCceEEEEcCCccE--EEEEecCCceeeEEeeccCCC
Q 001123 292 RSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG----FLSFALWDARTREL--LKVFNIDGQIENRVDMSLLPD 365 (1149)
Q Consensus 292 ~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas----d~tIrLWD~~TG~~--L~~l~~~g~~~~~v~~S~~~~ 365 (1149)
......++. ++..++... +..|.+||+.+++. ...+..+
T Consensus 272 --------------------~~~~~~~~~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~-------------- 316 (695)
T 2bkl_A 272 --------------------GAKYEVHAW-KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPE-------------- 316 (695)
T ss_dssp --------------------SCCEEEEEE-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECC--------------
T ss_pred --------------------CceEEEEec-CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecC--------------
Confidence 001111121 222222222 35678888766531 0111000
Q ss_pred ccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCcEEEEeCCCeEEEE
Q 001123 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQW 445 (1149)
Q Consensus 366 ~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~laSgs~DgtIrlW 445 (1149)
.+...+..+.++.+..+++...|++.+||
T Consensus 317 ---------------------------------------------------~~~~~l~~~~~~~~~lv~~~~~dg~~~l~ 345 (695)
T 2bkl_A 317 ---------------------------------------------------DSSASLLSVSIVGGHLSLEYLKDATSEVR 345 (695)
T ss_dssp ---------------------------------------------------CSSCEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred ---------------------------------------------------CCCCeEEEEEEECCEEEEEEEECCEEEEE
Confidence 00112334455533336788889998888
Q ss_pred eC--CCCeeEeeecC-CccEEEEE--ecCCEEE----EeecCcEEEEEeCCCceeeeeeccCC
Q 001123 446 DP--NGNRLQDFQYL-PFAVQCLC--TFGSQIW----VGYMNGIVQVLDLEGNLLGGWVAHSS 499 (1149)
Q Consensus 446 D~--tG~~l~tl~gH-~~~V~sls--~dG~~La----SGs~DGtIrlWD~~G~~l~~l~gH~~ 499 (1149)
.. +|+.++.+..+ ...|..++ .+|+.|+ +....++|++||+++.....+..+..
T Consensus 346 ~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~~~~~ 408 (695)
T 2bkl_A 346 VATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWAKVDV 408 (695)
T ss_dssp EEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEEECCC
T ss_pred EEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEecCCC
Confidence 66 68888887765 55666664 4688777 33356899999987433455555543
No 205
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.91 E-value=8.5e-08 Score=106.25 Aligned_cols=181 Identities=12% Similarity=0.038 Sum_probs=123.1
Q ss_pred eCCCcEEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEe
Q 001123 250 SSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA 329 (1149)
Q Consensus 250 SpdG~L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sa 329 (1149)
+|+..|++++.|+.|.+||.++++....+..+.. ..+..+...+++..++ +
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~----------------------------~~~~~~~~~pdG~ilv-s 53 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG----------------------------WECNSVAATKAGEILF-S 53 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTT----------------------------CCCCEEEECTTSCEEE-E
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc----------------------------CCCcCeEECCCCCEEE-e
Confidence 3544478999999999999988876554432110 1233445556666666 4
Q ss_pred cCCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEE
Q 001123 330 GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRV 409 (1149)
Q Consensus 330 sd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv 409 (1149)
.++.|..||. +|+.+..+.....
T Consensus 54 ~~~~V~~~d~-~G~~~W~~~~~~~-------------------------------------------------------- 76 (276)
T 3no2_A 54 YSKGAKMITR-DGRELWNIAAPAG-------------------------------------------------------- 76 (276)
T ss_dssp CBSEEEEECT-TSCEEEEEECCTT--------------------------------------------------------
T ss_pred CCCCEEEECC-CCCEEEEEcCCCC--------------------------------------------------------
Confidence 5677999998 8888777653110
Q ss_pred eecccccCCCCceEEEEEcCCCc-EEEEeC-CCeEEEEeCCCCeeEeeec------CCccEE--EEEecCCEEEEeecCc
Q 001123 410 AAKGGFGDDNRRTEALTTSIDGM-IWTGGA-NGLLLQWDPNGNRLQDFQY------LPFAVQ--CLCTFGSQIWVGYMNG 479 (1149)
Q Consensus 410 ~~~g~~~~~~~~V~ava~s~Dg~-laSgs~-DgtIrlWD~tG~~l~tl~g------H~~~V~--sls~dG~~LaSGs~DG 479 (1149)
..+.++.+.+||. +++.+. ++.|..+|.+|+.+.++.. +..... ++..+|++|++.+.++
T Consensus 77 ----------~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~ 146 (276)
T 3no2_A 77 ----------CEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATS 146 (276)
T ss_dssp ----------CEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTT
T ss_pred ----------ccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCC
Confidence 0122344567776 455555 6778788888888777652 111222 3345799999999999
Q ss_pred EEEEEeCCCceeeeeeccCCCeEEEE--ecCCeEEeecCCCceeeeeccC
Q 001123 480 IVQVLDLEGNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 480 tIrlWD~~G~~l~~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
.|..||.+|+.+.++..+. .+.++. ++|+.+++++.++.|..+|..+
T Consensus 147 ~v~~~d~~G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t 195 (276)
T 3no2_A 147 EVREIAPNGQLLNSVKLSG-TPFSSAFLDNGDCLVACGDAHCFVQLNLES 195 (276)
T ss_dssp EEEEECTTSCEEEEEECSS-CCCEEEECTTSCEEEECBTTSEEEEECTTT
T ss_pred EEEEECCCCCEEEEEECCC-CccceeEcCCCCEEEEeCCCCeEEEEeCcC
Confidence 9999999999998887753 344444 5888999888888898888654
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.91 E-value=9.2e-08 Score=120.24 Aligned_cols=230 Identities=8% Similarity=-0.010 Sum_probs=137.0
Q ss_pred ceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCc---
Q 001123 193 SVMCMVGDEASGVVWSGHRD-----GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG--- 263 (1149)
Q Consensus 193 ~V~~lafs~dg~~LaSGS~D-----GtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgT--- 263 (1149)
.+..++|||||++||.++.+ .+|++||+++|. ......+...+.+++|||| + |+.++.|+.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~---------~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~ 233 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGK---------PLADELKWVKFSGLAWLGN-DALLYSRFAEPKEG 233 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCC---------EEEEEEEEEESCCCEESTT-SEEEEEECCCC---
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC---------CCCccCCCceeccEEEECC-CEEEEEEecCcccc
Confidence 57789999999999887755 469999999875 2222222222357899999 7 777777665
Q ss_pred -----------EEEEeCCCcce--eeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEe-
Q 001123 264 -----------IKIWPWEAIEK--ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA- 329 (1149)
Q Consensus 264 -----------IRVWdl~t~~~--~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sa- 329 (1149)
|++|++.++.. .+.+.... + ...+..+.+++++..|+..
T Consensus 234 ~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~-----------------~----------~~~~~~~~~SpDG~~l~~~~ 286 (741)
T 1yr2_A 234 QAFQALNYNQTVWLHRLGTPQSADQPVFATPE-----------------L----------PKRGHGASVSSDGRWVVITS 286 (741)
T ss_dssp -----CCCCCEEEEEETTSCGGGCEEEECCTT-----------------C----------TTCEEEEEECTTSCEEEEEE
T ss_pred cccccCCCCCEEEEEECCCCchhCEEEeccCC-----------------C----------CeEEEEEEECCCCCEEEEEE
Confidence 88999876431 11111000 0 0113344556666655433
Q ss_pred cC-----CceEEEEcCCc--cEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeec
Q 001123 330 GF-----LSFALWDARTR--ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA 402 (1149)
Q Consensus 330 sd-----~tIrLWD~~TG--~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~ 402 (1149)
.+ ..|.+||+.++ ++...+..+..
T Consensus 287 ~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~------------------------------------------------- 317 (741)
T 1yr2_A 287 SEGTDPVNTVHVARVTNGKIGPVTALIPDLK------------------------------------------------- 317 (741)
T ss_dssp ECTTCSCCEEEEEEEETTEECCCEEEECSSS-------------------------------------------------
T ss_pred EccCCCcceEEEEECCCCCCcccEEecCCCC-------------------------------------------------
Confidence 22 25888888765 21222211000
Q ss_pred CCcEEEEeecccccCCCCceEEEEEcCCC-cEEEEeC----CCeEEEEeCC-C-CeeEeeec-CCccEEEEEec-CCEEE
Q 001123 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGA----NGLLLQWDPN-G-NRLQDFQY-LPFAVQCLCTF-GSQIW 473 (1149)
Q Consensus 403 ~d~v~rv~~~g~~~~~~~~V~ava~s~Dg-~laSgs~----DgtIrlWD~t-G-~~l~tl~g-H~~~V~sls~d-G~~La 473 (1149)
.+..... ++| .|+..+. ++.|.+||+. + ...+.+.. +...+..++++ +..++
T Consensus 318 ------------------~~~~~~~-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~ 378 (741)
T 1yr2_A 318 ------------------AQWDFVD-GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFA 378 (741)
T ss_dssp ------------------SCEEEEE-EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEE
T ss_pred ------------------ceEEEEe-ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEE
Confidence 0011112 333 3544443 4569999994 3 34444444 44456667665 56777
Q ss_pred EeecCcEEEEEe--CCCceeeeeecc-CCCeEEEE--ecCCeEE----eecCCCceeeeeccC
Q 001123 474 VGYMNGIVQVLD--LEGNLLGGWVAH-SSPVIKMA--VGAGYIF----TLANHGGIRGWNVTS 527 (1149)
Q Consensus 474 SGs~DGtIrlWD--~~G~~l~~l~gH-~~~V~sLa--~Dg~~La----SgS~DgtIRlWdl~s 527 (1149)
+...|+..+||. ++|+.+..+..+ .+.|..++ +|++.|+ |....++|.+||+.+
T Consensus 379 ~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 379 SYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp EEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred EEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 888899887775 557777777653 66777776 5777665 445578999999865
No 207
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.89 E-value=7e-08 Score=109.50 Aligned_cols=107 Identities=9% Similarity=-0.093 Sum_probs=68.7
Q ss_pred CCCceEEEEEcC-CCc-EEEEeCC------CeEEEEeCCCCeeEeeecCC--ccEEEEE--ecCCEEEEeecC-----cE
Q 001123 418 DNRRTEALTTSI-DGM-IWTGGAN------GLLLQWDPNGNRLQDFQYLP--FAVQCLC--TFGSQIWVGYMN-----GI 480 (1149)
Q Consensus 418 ~~~~V~ava~s~-Dg~-laSgs~D------gtIrlWD~tG~~l~tl~gH~--~~V~sls--~dG~~LaSGs~D-----Gt 480 (1149)
+...+..+.++| ||. |+..+.+ ..|.+||+.+..++.+..+. ..+..++ +||++|+.++.+ +.
T Consensus 186 ~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 265 (396)
T 3c5m_A 186 DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRV 265 (396)
T ss_dssp ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEE
T ss_pred CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccce
Confidence 344567788999 675 6655543 36888898665555554442 2465554 579988877655 66
Q ss_pred EEEEeCC-Ccee--eeeeccCCCeEEEEe-cCCeEEeec----------------CCCceeeeeccC
Q 001123 481 VQVLDLE-GNLL--GGWVAHSSPVIKMAV-GAGYIFTLA----------------NHGGIRGWNVTS 527 (1149)
Q Consensus 481 IrlWD~~-G~~l--~~l~gH~~~V~sLa~-Dg~~LaSgS----------------~DgtIRlWdl~s 527 (1149)
|++||++ |+.. ..+.++. ....+ ||++++.++ .+..|++||+.+
T Consensus 266 l~~~d~~~g~~~~l~~~~~~~---~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~ 329 (396)
T 3c5m_A 266 IYKANPETLENEEVMVMPPCS---HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA 329 (396)
T ss_dssp EEEECTTTCCEEEEEECCSEE---EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred EEEEECCCCCeEEeeeCCCCC---CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence 9999986 5432 2233322 33456 999888754 346799999754
No 208
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.88 E-value=1.5e-07 Score=117.47 Aligned_cols=93 Identities=5% Similarity=0.024 Sum_probs=67.1
Q ss_pred CEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCe----------------E
Q 001123 152 GLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGR----------------I 215 (1149)
Q Consensus 152 tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGt----------------I 215 (1149)
+|++||++++..... ... ...+..++|+|||+.|+.++.|+. |
T Consensus 152 ~i~v~d~~tg~~~~~--------------------~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v 210 (710)
T 2xdw_A 152 TIKFMKVDGAKELPD--------------------VLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKL 210 (710)
T ss_dssp EEEEEETTTTEEEEE--------------------EEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEE
T ss_pred EEEEEECCCCCCCcc--------------------ccc-CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEE
Confidence 799999998764421 111 122567899999999999998877 9
Q ss_pred EEEECCCCCCCCCCCccceEEee--cCCCCEEEEEEeCCCc-EEEEEC-----CCcEEEEeCCC
Q 001123 216 MCWKMNARLLDSDDGFGEVLSWQ--AHRGPVLSLCISSYGD-LWSGSE-----GGGIKIWPWEA 271 (1149)
Q Consensus 216 RvWdl~~g~~~~~~~~~~~~~l~--GH~~~VtsVafSpdG~-L~SGS~-----DgTIRVWdl~t 271 (1149)
++|++.++.. .....+. .|...+.+++|||||+ |+.++. +..|++||+.+
T Consensus 211 ~~~~l~t~~~------~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 268 (710)
T 2xdw_A 211 YYHVLGTDQS------EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ 268 (710)
T ss_dssp EEEETTSCGG------GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred EEEECCCCcc------cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence 9999987641 1123333 3667789999999998 654443 67899999875
No 209
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.87 E-value=5.3e-08 Score=108.16 Aligned_cols=304 Identities=13% Similarity=0.098 Sum_probs=176.3
Q ss_pred CCcccccccee-EEEEEe-eCCeEEEeC-CCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEc
Q 001123 124 HPLRETQIGCF-LRTIVC-TEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGD 200 (1149)
Q Consensus 124 ~pl~e~~~~~~-l~~l~~-~~~~l~ag~-D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs 200 (1149)
.++|....+.. ..+++. .++.+|.+. +++|..|| .++..... + ... ...+.+++++
T Consensus 10 ~~~W~~~~~~~~~~~~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~-----------------~--~~~-~~~~~~~~~~ 68 (330)
T 3hxj_A 10 KIKWEFLIGNSIDSSPILAKNGTIYLGSSNKNLYAIN-TDGSVKWF-----------------F--KSG-EIIECRPSIG 68 (330)
T ss_dssp --CCTTTSCEEECCCCEECTTSCEECSSTTTTTEEEC-TTSCEEES-----------------S--CGG-GEEEECCEET
T ss_pred eEEEEEeCCCCcccCceEccCCeEEEEcCCCEEEEEC-CCCcEEEE-----------------E--ecC-CCcccceEEe
Confidence 35566544322 223344 378899865 88899999 77765432 0 011 2345667777
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcceeeecCC
Q 001123 201 EASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKP 280 (1149)
Q Consensus 201 ~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~~~~~l~~ 280 (1149)
++|. |+-|+.+ |..+|. ++. ....+..+.....+.++. ++.|+.|+.++.|..+|.. ++.......
T Consensus 69 ~~g~-l~v~t~~--l~~~d~-~g~--------~~~~~~~~~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~~~ 134 (330)
T 3hxj_A 69 KDGT-IYFGSDK--VYAINP-DGT--------EKWRFDTKKAIVSDFTIF-EDILYVTSMDGHLYAINTD-GTEKWRFKT 134 (330)
T ss_dssp TTTE-ECCSSCE--EEEECC-CGG--------GGGGSCC-----CCEEEE-TTEEEEECTTSEEEEECTT-SCEEEEEEC
T ss_pred cCCc-EEEecCc--EEEECC-CCc--------EEEEEECCCCcccCceEE-CCEEEEEecCCEEEEEcCC-CCEEEEEcC
Confidence 7765 5555555 888886 332 122222222223334444 6789999999999999986 443222111
Q ss_pred CcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEe
Q 001123 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVD 359 (1149)
Q Consensus 281 ~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~ 359 (1149)
.. ..+..++.++++ .+|.+. ++.+..+|.. |+.+..+......+..+.
T Consensus 135 ~~-----------------------------~~~~~~~~~~~g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~ 183 (330)
T 3hxj_A 135 KK-----------------------------AIYATPIVSEDG-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS 183 (330)
T ss_dssp SS-----------------------------CCCSCCEECTTS-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred CC-----------------------------ceeeeeEEcCCC-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence 00 011122333344 355554 4789999998 887776654332211000
Q ss_pred eccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecc----cccCCCCceEEEEEcCCCcEEE
Q 001123 360 MSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG----GFGDDNRRTEALTTSIDGMIWT 435 (1149)
Q Consensus 360 ~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g----~~~~~~~~V~ava~s~Dg~laS 435 (1149)
. .. ...++.+. .++.++...+ .+......+.+++..++|.|+.
T Consensus 184 ~-------------------------------d~-~g~l~v~t-~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~v 230 (330)
T 3hxj_A 184 I-------------------------------GK-DGTIYFGS-DKVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYV 230 (330)
T ss_dssp E-------------------------------CT-TCCEEEES-SSEEEECTTSCEEEEECCSSCCCSCCEECTTSCEEE
T ss_pred E-------------------------------cC-CCEEEEEe-CEEEEECCCCcEEEEEccCCcceeceEECCCCeEEE
Confidence 0 00 01122222 3333332111 0111223456677888899999
Q ss_pred EeCCCeEEEEeCCCCeeEeeecCCccEEEEEec-CCEEEEeecCcEEEEEeCCCceeeeeeccCCCeEEEEe-cCCeEEe
Q 001123 436 GGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTF-GSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAV-GAGYIFT 513 (1149)
Q Consensus 436 gs~DgtIrlWD~tG~~l~tl~gH~~~V~sls~d-G~~LaSGs~DGtIrlWD~~G~~l~~l~gH~~~V~sLa~-Dg~~LaS 513 (1149)
++.++.|..+|.+|+.+..+......+.++..+ +..|+.|+.+|.|..+|.+|+.+..+......+.++.. .+..|+-
T Consensus 231 ~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~~ 310 (330)
T 3hxj_A 231 TSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINPDGTEKWNFETGSWIIATPVIDENGTIYF 310 (330)
T ss_dssp EETTTEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECTTSCEEEEEECSSCCCSCCEECTTCCEEE
T ss_pred EcCCCeEEEECCCCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECCCCcEEEEEEcCCccccceEEcCCCEEEE
Confidence 999889999998888877666544444455555 67899999999999999888877666655566677665 4446777
Q ss_pred ecCCCceeeeecc
Q 001123 514 LANHGGIRGWNVT 526 (1149)
Q Consensus 514 gS~DgtIRlWdl~ 526 (1149)
++.+|.+++-...
T Consensus 311 gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 311 GTRNGKFYALFNL 323 (330)
T ss_dssp ECTTSCEEEEEC-
T ss_pred EcCCCeEEEEecc
Confidence 8999999987654
No 210
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=98.86 E-value=2.7e-08 Score=110.70 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=37.7
Q ss_pred ccCcceeEEEEEEeceEEEEeeecccccc------hhHHHHHHHHHHHHHhc
Q 001123 674 IGNKGAVGLRVRVYDRIMCFVNCHFAAHL------EAVNRRNADFDHVYRTM 719 (1149)
Q Consensus 674 ~gNKGaV~ir~~~~~t~lcFVn~HLaA~~------~~~~~Rn~d~~~I~~~l 719 (1149)
..+||++.+++.+.+..+.++|+||.+.. .....|.+++..|.+.+
T Consensus 128 ~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i 179 (301)
T 1zwx_A 128 LSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFI 179 (301)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999873 35667888887776653
No 211
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=98.84 E-value=3.2e-08 Score=111.98 Aligned_cols=46 Identities=13% Similarity=0.134 Sum_probs=39.3
Q ss_pred ccCcceeEEEEEEeceEEEEeeecccccc------hhHHHHHHHHHHHHHhc
Q 001123 674 IGNKGAVGLRVRVYDRIMCFVNCHFAAHL------EAVNRRNADFDHVYRTM 719 (1149)
Q Consensus 674 ~gNKGaV~ir~~~~~t~lcFVn~HLaA~~------~~~~~Rn~d~~~I~~~l 719 (1149)
..+||.+.+++.+.+..+.++|+||.+.. .....|.++...|.+.+
T Consensus 147 ~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i 198 (317)
T 3i41_A 147 DSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFV 198 (317)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHH
T ss_pred ccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999875 35788888888887754
No 212
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.82 E-value=2.7e-06 Score=103.96 Aligned_cols=267 Identities=12% Similarity=0.068 Sum_probs=156.9
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCC--Cccee
Q 001123 199 GDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE--AIEKA 275 (1149)
Q Consensus 199 fs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~--t~~~~ 275 (1149)
.++.+.++++...|++|.+||..++. .+.++.. ...+..++|||||+ |++++.|++|.+||+. +.+..
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~~--------v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v 233 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTYE--------IKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV 233 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTCC--------EEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE
T ss_pred cCCCceEEEEeCCCCeEEEEECCCCe--------EEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe
Confidence 35667788899999999999999865 2444432 23567999999998 7888999999999995 44322
Q ss_pred eecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEc----CCCCEEEEec--CCceEEEEcCCccEEEEEe
Q 001123 276 LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD----HSRAKVWSAG--FLSFALWDARTRELLKVFN 349 (1149)
Q Consensus 276 ~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~----~~~~~v~Sas--d~tIrLWD~~TG~~L~~l~ 349 (1149)
..+. .......++++ +++.+++.+. .+++.++|..|.+.++++.
T Consensus 234 ~~i~------------------------------~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~ 283 (567)
T 1qks_A 234 AEIK------------------------------IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS 283 (567)
T ss_dssp EEEE------------------------------CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred EEEe------------------------------cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEe
Confidence 1110 00123456677 4777777654 5789999999999998875
Q ss_pred cCCce-----------eeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCc-EEEEeecccccC
Q 001123 350 IDGQI-----------ENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAKGGFGD 417 (1149)
Q Consensus 350 ~~g~~-----------~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~-v~rv~~~g~~~~ 417 (1149)
..+.. +..+..++..... .+.....+...+..-.+. ...+. -..
T Consensus 284 ~~~~~~~~~~~~p~~rva~i~~s~~~~~~--------------------vv~~~~~g~v~~vd~~~~~~~~v~----~i~ 339 (567)
T 1qks_A 284 TRGMTYDEQEYHPEPRVAAILASHYRPEF--------------------IVNVKETGKILLVDYTDLNNLKTT----EIS 339 (567)
T ss_dssp CCEECTTTCCEESCCCEEEEEECSSSSEE--------------------EEEETTTTEEEEEETTCSSEEEEE----EEE
T ss_pred ccccccccccccCCCceEEEEEcCCCCEE--------------------EEEecCCCeEEEEecCCCccceee----eee
Confidence 32210 0111111110000 000000000001100000 00000 001
Q ss_pred CCCceEEEEEcCCCc-EEE-EeCCCeEEEEeC-CCCeeEeeec-----CCc-cEEEEEecCCEEEEee--cCcEEEEEeC
Q 001123 418 DNRRTEALTTSIDGM-IWT-GGANGLLLQWDP-NGNRLQDFQY-----LPF-AVQCLCTFGSQIWVGY--MNGIVQVLDL 486 (1149)
Q Consensus 418 ~~~~V~ava~s~Dg~-laS-gs~DgtIrlWD~-tG~~l~tl~g-----H~~-~V~sls~dG~~LaSGs--~DGtIrlWD~ 486 (1149)
.......+.+++||+ +++ +..+++|.++|. +++.+..+.- |.. .++-+.+++..+++.+ .+++|.|+|.
T Consensus 340 ~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~ 419 (567)
T 1qks_A 340 AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGT 419 (567)
T ss_dssp CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEEC
T ss_pred ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecC
Confidence 122345677999987 444 445789999999 7877666543 543 3332345666665443 4689999996
Q ss_pred C--------CceeeeeeccCCC-e-EEEEecCCeEEeecC-------CCceeeeeccCC
Q 001123 487 E--------GNLLGGWVAHSSP-V-IKMAVGAGYIFTLAN-------HGGIRGWNVTSP 528 (1149)
Q Consensus 487 ~--------G~~l~~l~gH~~~-V-~sLa~Dg~~LaSgS~-------DgtIRlWdl~sp 528 (1149)
+ .+.++++.+.... + ....+++++++.... .++|-++|+.+.
T Consensus 420 ~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 420 DPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp CTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 5 3567777655332 2 234479998886442 469999998754
No 213
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.82 E-value=1.3e-05 Score=86.88 Aligned_cols=263 Identities=10% Similarity=0.083 Sum_probs=151.6
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEE-CCCcEEEEeC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS-EGGGIKIWPW 269 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS-~DgTIRVWdl 269 (1149)
...+.+++++++|.+.++...++.|.+||.. +.. . ...+..+...+.+|+++++|.|+-+. .++.|..||.
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~------~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~ 90 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI------K-EFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSK 90 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE------E-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce------E-EEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECC
Confidence 3467899999999988888789999999987 441 1 12233445789999999999976544 4788999998
Q ss_pred CCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEE
Q 001123 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (1149)
Q Consensus 270 ~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l 348 (1149)
. ++.. .+... . .......++.++++...++.. .+.|..||.. |+.....
T Consensus 91 ~-g~~~-~~~~~-----------------~----------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~ 140 (300)
T 2qc5_A 91 K-GGFT-EYPLP-----------------Q----------PDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYD 140 (300)
T ss_dssp T-SCEE-EEECS-----------------S----------TTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred C-CCeE-EecCC-----------------C----------CCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEcc
Confidence 6 3321 11000 0 002345566666655444433 4578888887 6654321
Q ss_pred -ecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeec-CCcEEEEeeccc-----ccCCCCc
Q 001123 349 -NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA-ADAVRRVAAKGG-----FGDDNRR 421 (1149)
Q Consensus 349 -~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~-~d~v~rv~~~g~-----~~~~~~~ 421 (1149)
.........+.+.+ ++...++.. ...+.++...+. +......
T Consensus 141 ~~~~~~~~~~i~~d~-------------------------------~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~ 189 (300)
T 2qc5_A 141 LPNKGSYPAFITLGS-------------------------------DNALWFTENQNNSIGRITNTGKLEEYPLPTNAAA 189 (300)
T ss_dssp CSSTTCCEEEEEECT-------------------------------TSSEEEEETTTTEEEEECTTCCEEEEECSSTTCC
T ss_pred CCCCCCCceeEEECC-------------------------------CCCEEEEecCCCeEEEECCCCcEEEeeCCCCCCC
Confidence 11111112222222 111111111 111222211111 1123346
Q ss_pred eEEEEEcCCCcEEEEeC-CCeEEEEeCCCCeeEe-eecCCccEEEEEec--CCEEEEeecCcEEEEEeCCCceee-eeec
Q 001123 422 TEALTTSIDGMIWTGGA-NGLLLQWDPNGNRLQD-FQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLEGNLLG-GWVA 496 (1149)
Q Consensus 422 V~ava~s~Dg~laSgs~-DgtIrlWD~tG~~l~t-l~gH~~~V~sls~d--G~~LaSGs~DGtIrlWD~~G~~l~-~l~g 496 (1149)
+..+++.++|.++.+.. .+.|.+||.+|+.... +..+...+.+++.+ |+..++...++.|..||.+|+... .+..
T Consensus 190 ~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~ 269 (300)
T 2qc5_A 190 PVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITNDNTIQEYQLQT 269 (300)
T ss_dssp EEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECCS
T ss_pred cceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCCCcEEEEECCc
Confidence 77888999999887665 5689999997765443 33345667888764 664444445689999998776432 2333
Q ss_pred cCCCeEEEEe--cCCeEEeecCCCceeeee
Q 001123 497 HSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (1149)
Q Consensus 497 H~~~V~sLa~--Dg~~LaSgS~DgtIRlWd 524 (1149)
+...+.+++. +|+..++.. . .|..++
T Consensus 270 ~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~ 297 (300)
T 2qc5_A 270 ENAEPHGITFGKDGSVWFALK-C-KIGKLN 297 (300)
T ss_dssp TTCCCCCEEECTTSCEEEECS-S-EEEEEE
T ss_pred cCCccceeEeCCCCCEEEEcc-C-ceEEeC
Confidence 4456777774 566555444 3 555444
No 214
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.81 E-value=1.1e-06 Score=94.69 Aligned_cols=225 Identities=8% Similarity=-0.024 Sum_probs=135.9
Q ss_pred EEEee-CCeEEE-e--CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCC
Q 001123 137 TIVCT-EEQLWA-G--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (1149)
Q Consensus 137 ~l~~~-~~~l~a-g--~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~D 212 (1149)
.|+.+ ++.+|. + .++.|.+||..+...... + ..+...+.+++++++|.++++.. +
T Consensus 28 ~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~----------------~----~~~~~~p~~i~~~~~g~l~v~~~-~ 86 (270)
T 1rwi_B 28 GVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL----------------P----FNGLYQPQGLAVDGAGTVYVTDF-N 86 (270)
T ss_dssp EEEECTTCCEEEEECSSSCEEEEECC-----EEC----------------C----CCSCCSCCCEEECTTCCEEEEET-T
T ss_pred ceEECCCCCEEEEccCCCCcEEEecCCCcccceE----------------e----eCCcCCcceeEECCCCCEEEEcC-C
Confidence 45554 456777 4 467899999754332110 0 00123566799999999777766 8
Q ss_pred CeEEEEECCCCCCCCCCCccceEEee-cCCCCEEEEEEeCCCcEE-EEECCCcEEEEeCCCcceeeecCCCcceeeEEEe
Q 001123 213 GRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGDLW-SGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (1149)
Q Consensus 213 GtIRvWdl~~g~~~~~~~~~~~~~l~-GH~~~VtsVafSpdG~L~-SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~ 290 (1149)
+.|.+||..++. ...+. +....+.+|+++++|+|+ +.+.++.|.+|+..+.........
T Consensus 87 ~~i~~~d~~~~~---------~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~---------- 147 (270)
T 1rwi_B 87 NRVVTLAAGSNN---------QTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT---------- 147 (270)
T ss_dssp TEEEEECTTCSC---------CEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCC----------
T ss_pred CEEEEEeCCCce---------EeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccc----------
Confidence 999999987643 22222 233678999999999965 556688999997644321110000
Q ss_pred eeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCcccc
Q 001123 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAME 369 (1149)
Q Consensus 291 ~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~ 369 (1149)
. ......++.++++...++.. .+.|.+||..++......
T Consensus 148 ---------~----------~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~--------------------- 187 (270)
T 1rwi_B 148 ---------G----------LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP--------------------- 187 (270)
T ss_dssp ---------S----------CCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC---------------------
T ss_pred ---------c----------CCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeec---------------------
Confidence 0 01223455666555333332 356888886643321100
Q ss_pred ccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCcEEEEe-CCCeEEEEeCC
Q 001123 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG-ANGLLLQWDPN 448 (1149)
Q Consensus 370 ~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~laSgs-~DgtIrlWD~t 448 (1149)
......+..+++.++|.++.+. .++.|.+||..
T Consensus 188 ----------------------------------------------~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~ 221 (270)
T 1rwi_B 188 ----------------------------------------------FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG 221 (270)
T ss_dssp ----------------------------------------------CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred ----------------------------------------------ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence 0001234567788888876555 57899999997
Q ss_pred CCeeEeee-cCCccEEEEEe--cCCEEEEeecCcEEEEEeCC
Q 001123 449 GNRLQDFQ-YLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 449 G~~l~tl~-gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~ 487 (1149)
|.....+. .+...+.++++ +|+.+++...+++|++++..
T Consensus 222 ~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 222 STTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 263 (270)
T ss_dssp CSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred CCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence 65443332 33356778876 58877787889999999976
No 215
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=98.79 E-value=4.5e-08 Score=107.02 Aligned_cols=134 Identities=18% Similarity=0.251 Sum_probs=74.3
Q ss_pred EEEEEEEEeCCCCCCc---------hhhcccccCCCCCcceEEEEeeccccccchhhhhhhhhhccCCCCcchhhHHHHH
Q 001123 553 KILAGTWNVGQGRASQ---------DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMI 623 (1149)
Q Consensus 553 ~i~v~TWNv~~~~~~~---------~~l~~wl~~~~~~~Di~viGlQEi~~~~~~~~~~~~ke~~~~~~~~~~~~W~~~i 623 (1149)
.+.|+||||.+..+.. +.+.++|.. .+|| ||+|||++.. ..+.|
T Consensus 3 ~l~v~t~Ni~~~~~~~~~~~~~~r~~~i~~~i~~--~~~D--Iv~LQEv~~~-----------------------~~~~l 55 (267)
T 3g6s_A 3 DVRWATFNIRYDNPQDSLNNWQYRKDRVCQFIKD--HELD--IVGMQEVLHN-----------------------QFQDL 55 (267)
T ss_dssp EEEEEEEECCCCCGGGGGGSGGGTHHHHHHHHHH--TTCS--EEEEESBCHH-----------------------HHHHH
T ss_pred cEEEEEEEeccCCCCccccCHHHHHHHHHHHHHH--cCCC--EEEEecCCHH-----------------------HHHHH
Confidence 5789999998765421 223334432 3567 5789999631 12234
Q ss_pred hcccCCCCcEEEEeeec----cceeeeeeeeeccccCccceeEeeeEe-------ecccccccCcceeEEEEEE--eceE
Q 001123 624 GKILDDGSTFERVGSRQ----LAGLLIAVWVRKNLKDYVGDVDVAAVP-------CGFGRAIGNKGAVGLRVRV--YDRI 690 (1149)
Q Consensus 624 ~~~L~~~~~y~~v~s~q----L~Gl~l~vfvr~~l~~~i~~v~~~~v~-------tG~~g~~gNKGaV~ir~~~--~~t~ 690 (1149)
.+.| .+ |..+.... -.|-.+.+|.|++-.+.+..-...--. .|+ +...+++++.++|.. .+..
T Consensus 56 ~~~l-~~--y~~~~~~~~~~~~~g~~~ail~~~s~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~R~~~~~~~~~~~~~~~ 131 (267)
T 3g6s_A 56 RAGL-PE--YDGIGVGRDDGKTAGEYAPLFYRKDKYEVLDSNTFWLAENPDSVGMMGW-DAVCVRIATWAKFKDKATGKI 131 (267)
T ss_dssp HHHC-TT--EEEECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEESSSCTTSTTCCCT-TCSSCCEEEEEEEEETTTCCE
T ss_pred HHhc-cC--CcEEEecCCCCCcCCceeEEEEEccceEEEecccEecCCCCCccccccc-cccCcceEEEEEEEEcCCCCE
Confidence 4444 22 33333221 244557777776644332211100000 111 123467888888885 5679
Q ss_pred EEEeeecccccchhHHHHHHHHHHHHHhc
Q 001123 691 MCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (1149)
Q Consensus 691 lcFVn~HLaA~~~~~~~Rn~d~~~I~~~l 719 (1149)
++++|+||.+.. .+.|.+....|.+.+
T Consensus 132 ~~v~~~Hl~~~~--~~~R~~q~~~l~~~l 158 (267)
T 3g6s_A 132 FMAVNTHFDHVG--EEARRQSALLIIRKI 158 (267)
T ss_dssp EEEEEEECCSSC--HHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCC--HHHHHHHHHHHHHHH
Confidence 999999998764 356667776776654
No 216
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.78 E-value=4.2e-06 Score=102.23 Aligned_cols=287 Identities=11% Similarity=0.050 Sum_probs=162.1
Q ss_pred eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEECC--CCCC
Q 001123 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMN--ARLL 225 (1149)
Q Consensus 148 g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~--~g~~ 225 (1149)
..+++|.|||.+++..... +.....+.+++|||||++|+.++.|+.|.+||+. ++.
T Consensus 174 ~~~~~V~viD~~t~~v~~~---------------------i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~- 231 (567)
T 1qks_A 174 RDAGQIALIDGSTYEIKTV---------------------LDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT- 231 (567)
T ss_dssp TTTTEEEEEETTTCCEEEE---------------------EECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC-
T ss_pred CCCCeEEEEECCCCeEEEE---------------------EeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc-
Confidence 3578899999988765543 1102245589999999999999999999999995 432
Q ss_pred CCCCCccceEEeecCCCCEEEEEEe----CCCc-EE-EEECCCcEEEEeCCCcceeeecCCCc-----------ceeeEE
Q 001123 226 DSDDGFGEVLSWQAHRGPVLSLCIS----SYGD-LW-SGSEGGGIKIWPWEAIEKALSLKPEE-----------RHTAAL 288 (1149)
Q Consensus 226 ~~~~~~~~~~~l~GH~~~VtsVafS----pdG~-L~-SGS~DgTIRVWdl~t~~~~~~l~~~~-----------~~~~a~ 288 (1149)
.+.++....+ -..++|| |||+ ++ +.-.+++|.|+|..+.+....+.... .....+
T Consensus 232 -------~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i 303 (567)
T 1qks_A 232 -------TVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAI 303 (567)
T ss_dssp -------EEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEE
T ss_pred -------EeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEE
Confidence 3445544333 4689999 6997 54 55577999999998866543332110 011111
Q ss_pred Eeeec----ccccccccccc----------ceeeee-cCCeEEEEEcCCCCEEEEec--CCceEEEEcCCccEEEEEecC
Q 001123 289 IVERS----YIDLRSHLSVN----------GFSSIL-TSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNID 351 (1149)
Q Consensus 289 ~~~~~----~~~l~~~~~~~----------g~~~~~-~~dv~~las~~~~~~v~Sas--d~tIrLWD~~TG~~L~~l~~~ 351 (1149)
..... ...++..+.+. .+..+. ........+++++..++.+. +++|.++|+.+++++..+...
T Consensus 304 ~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vg 383 (567)
T 1qks_A 304 LASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTG 383 (567)
T ss_dssp EECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred EEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEecc
Confidence 10000 00000000000 000000 11223445666666655432 466777887777665543210
Q ss_pred CceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCC-
Q 001123 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID- 430 (1149)
Q Consensus 352 g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~D- 430 (1149)
+.. .|..+-..+ +.|+
T Consensus 384 g~~--------------------------------------------------------------Phpg~g~~~-~~p~~ 400 (567)
T 1qks_A 384 GQT--------------------------------------------------------------PHPGRGANF-VHPTF 400 (567)
T ss_dssp SSS--------------------------------------------------------------BCCTTCEEE-EETTT
T ss_pred CcC--------------------------------------------------------------CCCccceee-ECCCC
Confidence 100 011101111 4555
Q ss_pred CcEEEEe--CCCeEEEEeC-C-------CCeeEeeecCCcc-E-EEEEecCCEEEEeec-------CcEEEEEeCC-C--
Q 001123 431 GMIWTGG--ANGLLLQWDP-N-------GNRLQDFQYLPFA-V-QCLCTFGSQIWVGYM-------NGIVQVLDLE-G-- 488 (1149)
Q Consensus 431 g~laSgs--~DgtIrlWD~-t-------G~~l~tl~gH~~~-V-~sls~dG~~LaSGs~-------DGtIrlWD~~-G-- 488 (1149)
+.+++.+ .+++|.++|. + -+.++++...... + -.+.++|++|++... ..+|.|+|+. .
T Consensus 401 g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~ 480 (567)
T 1qks_A 401 GPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTG 480 (567)
T ss_dssp EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCC
T ss_pred CcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccc
Confidence 4565433 4689999998 4 3577887764322 2 134568999999763 4699999964 3
Q ss_pred ---c-eeeeee-----c---cCCCeEEEE--ecCCeEEeec-----CCCceeeeeccC
Q 001123 489 ---N-LLGGWV-----A---HSSPVIKMA--VGAGYIFTLA-----NHGGIRGWNVTS 527 (1149)
Q Consensus 489 ---~-~l~~l~-----g---H~~~V~sLa--~Dg~~LaSgS-----~DgtIRlWdl~s 527 (1149)
. ....+. + -...+..+. +||++++..- .++.|-+.|..+
T Consensus 481 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t 538 (567)
T 1qks_A 481 DGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKT 538 (567)
T ss_dssp SSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred cccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCC
Confidence 1 112221 1 123567776 5898877542 378999988654
No 217
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.77 E-value=1.5e-05 Score=86.35 Aligned_cols=265 Identities=12% Similarity=0.094 Sum_probs=150.4
Q ss_pred eEEEEEee-CCeEEEeC--CCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEe
Q 001123 134 FLRTIVCT-EEQLWAGG--ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (1149)
Q Consensus 134 ~l~~l~~~-~~~l~ag~--D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS 210 (1149)
..+.|+.+ ++.+|.+. ++.|.+||.. +..... ..... ...+.+++++++|.+.++..
T Consensus 16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~------------------~~~~~-~~~~~~i~~~~~g~l~v~~~ 75 (299)
T 2z2n_A 16 GPYGITVSDKGKVWITQHKANMISCINLD-GKITEY------------------PLPTP-DAKVMCLTISSDGEVWFTEN 75 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEE------------------ECSST-TCCEEEEEECTTSCEEEEET
T ss_pred CccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEe------------------cCCcc-cCceeeEEECCCCCEEEeCC
Confidence 44566665 56787754 5779999976 432110 00001 34678999999999888888
Q ss_pred CCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEE-EECCCcEEEEeCCCcceeeecCCCcceeeEEE
Q 001123 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWS-GSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (1149)
Q Consensus 211 ~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~S-GS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~ 289 (1149)
.++.|..|+..+ .. ....+..+...+.+|+++++|+|+- ...++.|.+||. +++......+
T Consensus 76 ~~~~i~~~~~~g-~~-------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~--------- 137 (299)
T 2z2n_A 76 AANKIGRITKKG-II-------KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELP--------- 137 (299)
T ss_dssp TTTEEEEECTTS-CE-------EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECS---------
T ss_pred CCCeEEEECCCC-cE-------EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCC---------
Confidence 899999999863 20 1122223456799999999999764 456789999998 4322110000
Q ss_pred eeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEE-ecCCceeeEEeeccCCCcc
Q 001123 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF-NIDGQIENRVDMSLLPDFA 367 (1149)
Q Consensus 290 ~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l-~~~g~~~~~v~~S~~~~~~ 367 (1149)
. .......++.++++...++.. .+.|..||. +|+..... .........+.+.+.
T Consensus 138 ---------~----------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~---- 193 (299)
T 2z2n_A 138 ---------N----------KGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGND---- 193 (299)
T ss_dssp ---------S----------TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT----
T ss_pred ---------C----------CCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCC----
Confidence 0 012345666776664433333 467999998 77765431 111111122222221
Q ss_pred ccccceeeEEecCCCCccceeeeeeccccceEeec-CCcEEEEeecc-----cccCCCCceEEEEEcCCCcEEEEe-CCC
Q 001123 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA-ADAVRRVAAKG-----GFGDDNRRTEALTTSIDGMIWTGG-ANG 440 (1149)
Q Consensus 368 ~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~-~d~v~rv~~~g-----~~~~~~~~V~ava~s~Dg~laSgs-~Dg 440 (1149)
+...+... ...+.++...+ .+......+.++++.++|.++.+. .++
T Consensus 194 ---------------------------g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~ 246 (299)
T 2z2n_A 194 ---------------------------DALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGAN 246 (299)
T ss_dssp ---------------------------SSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTT
T ss_pred ---------------------------CCEEEEccCCceEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCc
Confidence 11111111 11222221111 012234567889999999988776 578
Q ss_pred eEEEEeCCCCeeEe-eecCCccEEEEEecCCEEEEeecCcEEEEEeCC
Q 001123 441 LLLQWDPNGNRLQD-FQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 441 tIrlWD~tG~~l~t-l~gH~~~V~sls~dG~~LaSGs~DGtIrlWD~~ 487 (1149)
.|..||.+|+.... +..+...+.+++.....|+.+...+.|..+|..
T Consensus 247 ~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~g~l~v~~~~~~l~~~~~~ 294 (299)
T 2z2n_A 247 KIGRLTSNNIIEEYPIQIKSAEPHGICFDGETIWFAMECDKIGKLTLI 294 (299)
T ss_dssp EEEEEETTTEEEEEECSSSSCCEEEEEECSSCEEEEETTTEEEEEEEC
T ss_pred eEEEECCCCceEEEeCCCCCCccceEEecCCCEEEEecCCcEEEEEcC
Confidence 99999997753222 234455677776543445555445666667754
No 218
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.77 E-value=1.4e-06 Score=102.03 Aligned_cols=234 Identities=12% Similarity=0.076 Sum_probs=142.3
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCC--cEEEEe
Q 001123 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGG--GIKIWP 268 (1149)
Q Consensus 192 ~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~Dg--TIRVWd 268 (1149)
.....|+++++|.++++...++.|++||++++. +.++.+...... ++|+++|+ |+.+..++ .|.+|+
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~---------~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d 200 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNK---------VTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYM 200 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTE---------EEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCE---------EEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEE
Confidence 356789999999999998889999999998754 333333222233 99999997 77777766 677777
Q ss_pred CCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEE
Q 001123 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (1149)
Q Consensus 269 l~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~ 347 (1149)
..++.....+.. +... .......+++++++..|+.+. ++.|..||..++.. ..
T Consensus 201 ~~~~~~~~~~g~----------------~~~~---------~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~-~~ 254 (409)
T 3hrp_A 201 KASGWAPTRIGQ----------------LGST---------FSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV-TL 254 (409)
T ss_dssp GGGTTCEEEEEE----------------CCTT---------SCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE-EE
T ss_pred cCCCceeEEeee----------------ccch---------hcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE-EE
Confidence 754322111100 0000 001233455666444444433 45688999887652 11
Q ss_pred EecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCc--eEEE
Q 001123 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRR--TEAL 425 (1149)
Q Consensus 348 l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~--V~av 425 (1149)
+...+.. +.... ...+
T Consensus 255 ~~~~~~~--------------------------------------------------------------g~~~~~P~~~i 272 (409)
T 3hrp_A 255 IKQLELS--------------------------------------------------------------GSLGTNPGPYL 272 (409)
T ss_dssp EEECCCC--------------------------------------------------------------SCCCCSSCCEE
T ss_pred Eeccccc--------------------------------------------------------------CCCCCCccccE
Confidence 1100000 00000 0156
Q ss_pred EEcC-CCcEE-EEeCCCeEEEEeCCCCeeEeeecCC---------------ccEEEEEe--cCCEEEEee-cCcEEEEEe
Q 001123 426 TTSI-DGMIW-TGGANGLLLQWDPNGNRLQDFQYLP---------------FAVQCLCT--FGSQIWVGY-MNGIVQVLD 485 (1149)
Q Consensus 426 a~s~-Dg~la-Sgs~DgtIrlWD~tG~~l~tl~gH~---------------~~V~sls~--dG~~LaSGs-~DGtIrlWD 485 (1149)
+++| ++.|+ +-..++.|+.||.+|+ +.++.++. .....+++ +|+.+++-+ ..+.|+.||
T Consensus 273 a~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~ 351 (409)
T 3hrp_A 273 IYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLD 351 (409)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEE
T ss_pred EEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEE
Confidence 6777 57765 4455789999999876 44444442 23566765 588666666 789999999
Q ss_pred CC-Cceeeeeecc---------------CCCeEEEEe--cCCeEEeecCCCceeeeec
Q 001123 486 LE-GNLLGGWVAH---------------SSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 486 ~~-G~~l~~l~gH---------------~~~V~sLa~--Dg~~LaSgS~DgtIRlWdl 525 (1149)
.. |+ +.++.|+ -.....|+. +|.++++-..++.||.+++
T Consensus 352 ~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 352 ILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 54 54 4556565 235677774 5667777777888887765
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.77 E-value=1.5e-06 Score=96.63 Aligned_cols=70 Identities=14% Similarity=0.052 Sum_probs=56.2
Q ss_pred CCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEEC-CCcEEEEe
Q 001123 191 VSSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSE-GGGIKIWP 268 (1149)
Q Consensus 191 ~~~V~~lafs~dg~-~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~-DgTIRVWd 268 (1149)
.......+|+++|+ ++|++..++.|..|+.. +. ...+..+.+.+.+++++++|+|+.+.. ++.|.+|+
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~---------~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT---------VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSD 113 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC---------EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC---------EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEEC
Confidence 34556788999987 88999999999999984 32 445666778899999999999877764 47899999
Q ss_pred CC
Q 001123 269 WE 270 (1149)
Q Consensus 269 l~ 270 (1149)
.+
T Consensus 114 ~~ 115 (305)
T 3dr2_A 114 AD 115 (305)
T ss_dssp TT
T ss_pred CC
Confidence 75
No 220
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=98.75 E-value=7.7e-08 Score=104.40 Aligned_cols=134 Identities=13% Similarity=0.031 Sum_probs=75.8
Q ss_pred EEEEEEEeCCCCCCch---------hhcccccCCCCCcceEEEEeeccccccchhhhhhhhhhccCCCCcchhhHHHHHh
Q 001123 554 ILAGTWNVGQGRASQD---------ALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIG 624 (1149)
Q Consensus 554 i~v~TWNv~~~~~~~~---------~l~~wl~~~~~~~Di~viGlQEi~~~~~~~~~~~~ke~~~~~~~~~~~~W~~~i~ 624 (1149)
+.|+||||.+..+... .+.++|.. .+||| |+|||++.. +.+.|.
T Consensus 1 lrv~t~Ni~~~~~~~~~~~w~~r~~~i~~~i~~--~~~DI--v~LQEv~~~-----------------------~~~~l~ 53 (257)
T 3l1w_A 1 MKIATYNVRVDTEYDQDWQWSFRKEAVCQLINF--HDWSL--CCIQEVRPN-----------------------QVRDLK 53 (257)
T ss_dssp CEEEEEECCCCCGGGGGGSHHHHHHHHHHHHHH--HCCSE--EEEEEECHH-----------------------HHHHHH
T ss_pred CEEEEEEeccCCCCccccChHHHHHHHHHHHHH--cCCCE--EEEeCCCHH-----------------------HHHHHH
Confidence 3589999987655321 23344432 24665 789999521 122333
Q ss_pred cccCCCCcEEEEeeec-cceeeeeeeeeccccCccceeEe--e----eEeecccccccCcceeEEEEEEe--ceEEEEee
Q 001123 625 KILDDGSTFERVGSRQ-LAGLLIAVWVRKNLKDYVGDVDV--A----AVPCGFGRAIGNKGAVGLRVRVY--DRIMCFVN 695 (1149)
Q Consensus 625 ~~L~~~~~y~~v~s~q-L~Gl~l~vfvr~~l~~~i~~v~~--~----~v~tG~~g~~gNKGaV~ir~~~~--~t~lcFVn 695 (1149)
+.| ++.|....... -.|-.+.+|.|++..+.+..-.. . ..+.|. +...+++++.++|... +..+.++|
T Consensus 54 ~~l--~y~~~~~~~~~~~~~~g~ail~r~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~g~~~~v~~ 130 (257)
T 3l1w_A 54 AYT--TFTCLSAEREGDGQGEGLAILYNEQKVQAIDTGYFWLSETPQQPSIHP-EAGCPRIALWGLFKETTQNTPFLVIN 130 (257)
T ss_dssp HHS--SSEEEEEESSSSSCSCEEEEEECTTTEEEEEEEEEESSSSTTSSCCCT-TCSSCCEEEEEEEEETTCSSCEEEEE
T ss_pred hcC--CCcEEEecccCCCCCceEEEEEEcceEEEEecCeEECcCCCCcccccc-cccccceeEEEEEEEcCCCCEEEEEE
Confidence 344 34443322211 34556778888664333221111 0 001111 2345788888998884 67999999
Q ss_pred ecccccchhHHHHHHHHHHHHHhc
Q 001123 696 CHFAAHLEAVNRRNADFDHVYRTM 719 (1149)
Q Consensus 696 ~HLaA~~~~~~~Rn~d~~~I~~~l 719 (1149)
+||.+... +.|.++...|.+.+
T Consensus 131 ~Hl~~~~~--~~r~~q~~~l~~~i 152 (257)
T 3l1w_A 131 VHLDHISA--HARLAGMTVILEEL 152 (257)
T ss_dssp EECCSSCH--HHHHHHHHHHHHHT
T ss_pred eCCCCCCH--HHHHHHHHHHHHHH
Confidence 99998743 56778888887654
No 221
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=98.74 E-value=6.5e-08 Score=108.11 Aligned_cols=136 Identities=17% Similarity=0.150 Sum_probs=76.6
Q ss_pred ceEEEEEEEEeCCCCCCc-----------hhhcccccCCCCCcceEEEEeeccccccchhhhhhhhhhccCCCCcchhhH
Q 001123 551 NLKILAGTWNVGQGRASQ-----------DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWW 619 (1149)
Q Consensus 551 ~~~i~v~TWNv~~~~~~~-----------~~l~~wl~~~~~~~Di~viGlQEi~~~~~~~~~~~~ke~~~~~~~~~~~~W 619 (1149)
.-.+.|+||||....+.. +.+..+|.. .+|| ||||||++.. +
T Consensus 4 ~~~lrV~t~Ni~~~~~~~~~~~~~w~~r~~~i~~~i~~--~~~D--Iv~LQEv~~~-----------------------~ 56 (298)
T 3mpr_A 4 PTSLTVASYNLRNANGSDSARGDGWGQRYPVIAQMVQY--HDFD--IFGTQECFLH-----------------------Q 56 (298)
T ss_dssp CEEEEEEEEECCCCCHHHHHHTCCHHHHHHHHHHHHHH--TTCS--EEEEESBCHH-----------------------H
T ss_pred CCcEEEEEEEeccCCCCCcccccCHHHHHHHHHHHHHH--cCCC--EEEEeCCCHH-----------------------H
Confidence 346889999997554321 123333432 3577 5789999521 2
Q ss_pred HHHHhcccCCCCcEEEEeeec----cceeeeeeeeeccccCccceeEee------eEeecccccccCcceeEEEEEE--e
Q 001123 620 LDMIGKILDDGSTFERVGSRQ----LAGLLIAVWVRKNLKDYVGDVDVA------AVPCGFGRAIGNKGAVGLRVRV--Y 687 (1149)
Q Consensus 620 ~~~i~~~L~~~~~y~~v~s~q----L~Gl~l~vfvr~~l~~~i~~v~~~------~v~tG~~g~~gNKGaV~ir~~~--~ 687 (1149)
.+.|.+.|+ .|..+.... -.|-.+.+|.|++-.+.+..-... ..+.|.. ..-+++++.++|+. .
T Consensus 57 ~~~l~~~l~---~y~~~~~~~~~g~~~g~~~aily~~sr~~i~~~~~~~l~~~p~~~~~~~~-~~~~R~~~~~~~~~~~~ 132 (298)
T 3mpr_A 57 LKDMKEALP---GYDYIGVGRDDGKDKGEHSAIFYRTDKFDIVEKGDFWLSETPDVPSKGWD-AVLPRICSWGHFKCKDT 132 (298)
T ss_dssp HHHHHHHST---TEEEECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEESSSSTTSSCCCTT-CSSCCEEEEEEEEETTT
T ss_pred HHHHHHhCC---CCcEEEEecCCCCCCCceeEEEEecCceEEEeccEEEccCCCCccCcccc-cccCceeEEEEEEEcCC
Confidence 334445552 244343332 245557777776654332211100 0011221 12367788888884 6
Q ss_pred ceEEEEeeecccccchhHHHHHHHHHHHHHhc
Q 001123 688 DRIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (1149)
Q Consensus 688 ~t~lcFVn~HLaA~~~~~~~Rn~d~~~I~~~l 719 (1149)
+..|+++|+||.... .+.|.++...|.+.+
T Consensus 133 g~~~~v~~~Hl~~~~--~~~R~~q~~~l~~~i 162 (298)
T 3mpr_A 133 GFEFLFFNLHMDHIG--KKARVESAFLVQEKM 162 (298)
T ss_dssp CCEEEEEEEECCSSC--HHHHHHHHHHHHHHH
T ss_pred CCEEEEEEecCCCCC--HHHHHHHHHHHHHHH
Confidence 789999999998543 356777777776654
No 222
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.72 E-value=7.6e-07 Score=101.09 Aligned_cols=268 Identities=9% Similarity=-0.054 Sum_probs=145.8
Q ss_pred CceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCCCCCCCCccc-eEEeecCCCCEEEEEEeCCCcEEEEEC------CC
Q 001123 192 SSVMCMVGDEASGVVWSGH--RDGRIMCWKMNARLLDSDDGFGE-VLSWQAHRGPVLSLCISSYGDLWSGSE------GG 262 (1149)
Q Consensus 192 ~~V~~lafs~dg~~LaSGS--~DGtIRvWdl~~g~~~~~~~~~~-~~~l~GH~~~VtsVafSpdG~L~SGS~------Dg 262 (1149)
..+..++++++|+++++.. .++.++||.+.++.. .++.. .....+|...+.+|+|+++|+||.... +.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~---~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL---IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE---EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe---ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence 4678899999999999975 345578888764321 00000 001235678999999999999765432 57
Q ss_pred cEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEe-----cCCceEEE
Q 001123 263 GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-----GFLSFALW 337 (1149)
Q Consensus 263 TIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sa-----sd~tIrLW 337 (1149)
.|.+||+.+++....+..... . . .+......+++++++..++-+ .+..|.+|
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~-------------~---~-------~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~ 150 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPP-------------I---T-------LSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRV 150 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTT-------------T---S-------CTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEE
T ss_pred eEEEEECCCCeEEEEEECChh-------------h---c-------ccccccceEEEecCCCEEEEEcCccCCCCeEEEE
Confidence 899999987653222210000 0 0 001223445666544444332 34679999
Q ss_pred EcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccC
Q 001123 338 DARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGD 417 (1149)
Q Consensus 338 D~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~ 417 (1149)
|+.+|+..+.+..+.... +.. ..+..++..+.....++..+.+
T Consensus 151 d~~~g~~~r~~~~~~~~~------~~~------------------------~~~~~~g~~~~~~~~~g~~~~~------- 193 (343)
T 2qe8_A 151 DLQTGLAARVLQGYPGIA------PED------------------------IDLVIDGVPVQIGQPDGTVIRP------- 193 (343)
T ss_dssp ETTTCCEEEECTTCTTTS------CCS------------------------CCCEETTEECBEECTTSCEECC-------
T ss_pred ECCCCCEEEEecCCCccc------ccc------------------------cceeECCEEEEeccCCCceece-------
Confidence 999998877664322110 000 0011111111111112211111
Q ss_pred CCCceEEEEEcCCCc-EEEEeCCCeEEEEeCC------CC-----eeE--eeecCCccEEEEE--ecCCEEEEeecCcEE
Q 001123 418 DNRRTEALTTSIDGM-IWTGGANGLLLQWDPN------GN-----RLQ--DFQYLPFAVQCLC--TFGSQIWVGYMNGIV 481 (1149)
Q Consensus 418 ~~~~V~ava~s~Dg~-laSgs~DgtIrlWD~t------G~-----~l~--tl~gH~~~V~sls--~dG~~LaSGs~DGtI 481 (1149)
...+..++++|||. |+.+..++. ++|.+. +. ... ...++......++ .+|...++...++.|
T Consensus 194 -~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V 271 (343)
T 2qe8_A 194 -HLGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAI 271 (343)
T ss_dssp -CCCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEE
T ss_pred -ecccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeE
Confidence 12356788999996 777776653 445431 11 000 1113333333344 468888888889999
Q ss_pred EEEeC-CCceeeeeec-cCCCeEEEEe--cCCeEEeecCCCceeeee
Q 001123 482 QVLDL-EGNLLGGWVA-HSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (1149)
Q Consensus 482 rlWD~-~G~~l~~l~g-H~~~V~sLa~--Dg~~LaSgS~DgtIRlWd 524 (1149)
.+||. +|+....... +...+.++++ +++++++.+..+.+-++.
T Consensus 272 ~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 272 GVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp EEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred EEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 99998 7865333222 2456778885 566666665544444443
No 223
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.71 E-value=4.6e-06 Score=92.42 Aligned_cols=216 Identities=13% Similarity=0.122 Sum_probs=129.7
Q ss_pred EEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcc
Q 001123 195 MCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIE 273 (1149)
Q Consensus 195 ~~lafs~d-g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~ 273 (1149)
-+.+|+++ +.++|+...+++|..||..++. ...+ .+.+.+.+++++++|+|+.+. ++.|.+||.++++
T Consensus 16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~---------~~~~-~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ---------VQRV-TMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQS 84 (297)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTCC---------EEEE-ECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTE
T ss_pred cCCeEECCCCEEEEEECCCCEEEEEECCCCc---------EEEE-eCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCc
Confidence 36788885 6788999999999999998754 2233 345789999999999987776 5679999987654
Q ss_pred eeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-C---------CceEEEEcCCcc
Q 001123 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-F---------LSFALWDARTRE 343 (1149)
Q Consensus 274 ~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d---------~tIrLWD~~TG~ 343 (1149)
......... .. +......+++++++...++.. . ...+||.+..
T Consensus 85 ~~~~~~~~~-----------------~~--------~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~-- 137 (297)
T 3g4e_A 85 AVVLATVDN-----------------DK--------KNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP-- 137 (297)
T ss_dssp EEEEEECCT-----------------TC--------SSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT--
T ss_pred EEEEEecCC-----------------CC--------CCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC--
Confidence 221110000 00 001234556666654322211 0 0111221110
Q ss_pred EEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceE
Q 001123 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (1149)
Q Consensus 344 ~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ 423 (1149)
++.. ..+. .......
T Consensus 138 -------~g~~----------------------------------------------------~~~~------~~~~~pn 152 (297)
T 3g4e_A 138 -------DHHV----------------------------------------------------KKYF------DQVDISN 152 (297)
T ss_dssp -------TSCE----------------------------------------------------EEEE------EEESBEE
T ss_pred -------CCCE----------------------------------------------------EEEe------ecccccc
Confidence 0000 0000 0011235
Q ss_pred EEEEcCCCc-E-EEEeCCCeEEEEeC---CCCe-----eEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-Cce
Q 001123 424 ALTTSIDGM-I-WTGGANGLLLQWDP---NGNR-----LQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNL 490 (1149)
Q Consensus 424 ava~s~Dg~-l-aSgs~DgtIrlWD~---tG~~-----l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~ 490 (1149)
.++++||+. + ++.+.++.|.+||+ +|.. +..+..+......+++ +|...++....+.|.+||.+ |++
T Consensus 153 gi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~ 232 (297)
T 3g4e_A 153 GLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKR 232 (297)
T ss_dssp EEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCE
T ss_pred ceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceE
Confidence 678899986 5 45556789999986 4543 2223333345667766 47655565667899999986 999
Q ss_pred eeeeeccCCCeEEEEe---cCCeEEe
Q 001123 491 LGGWVAHSSPVIKMAV---GAGYIFT 513 (1149)
Q Consensus 491 l~~l~gH~~~V~sLa~---Dg~~LaS 513 (1149)
+..+..+...++++++ |++.|+-
T Consensus 233 ~~~i~~p~~~~t~~~f~g~d~~~L~v 258 (297)
T 3g4e_A 233 LQTVKLPVDKTTSCCFGGKNYSEMYV 258 (297)
T ss_dssp EEEEECSSSBEEEEEEESGGGCEEEE
T ss_pred EEEEECCCCCceEEEEeCCCCCEEEE
Confidence 9999888888999886 4455543
No 224
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.71 E-value=1.1e-08 Score=118.19 Aligned_cols=190 Identities=14% Similarity=0.106 Sum_probs=104.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCC
Q 001123 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (1149)
Q Consensus 202 dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~ 280 (1149)
++.+|++|+.||.|+.||..+|+ ...++.. +++.+..+..+|. +++++.|++|+.||.++++.......
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~--------~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~ 77 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGS--------IKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPF 77 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCC--------EEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSC
T ss_pred eCCEEEEEcCCCEEEEEECCCCC--------EEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeec
Confidence 57899999999999999999876 3556665 5666666777776 67788999999999988765433211
Q ss_pred CcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEE-ecCCceEEEEcCCccEEEEEecCCceeeEEe
Q 001123 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS-AGFLSFALWDARTRELLKVFNIDGQIENRVD 359 (1149)
Q Consensus 281 ~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~S-asd~tIrLWD~~TG~~L~~l~~~g~~~~~v~ 359 (1149)
.... . ... ..+ ... +.+|+. ..++++..||+.||+.+..+..++..
T Consensus 78 ~~~~---------------~--~~~------sp~----~~~-~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~~----- 124 (369)
T 2hz6_A 78 TIPE---------------L--VQA------SPC----RSS-DGILYMGKKQDIWYVIDLLTGEKQQTLSSAFAD----- 124 (369)
T ss_dssp CHHH---------------H--HTT------CSC----C------CCCCEEEEEEEEECCC-------------------
T ss_pred cCcc---------------c--ccc------Cce----Eec-CCEEEEEeCCCEEEEEECCCCcEEEEecCCCcc-----
Confidence 1000 0 000 000 001 123333 33567999999999877655321100
Q ss_pred eccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEc-CCCcEEEEeC
Q 001123 360 MSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS-IDGMIWTGGA 438 (1149)
Q Consensus 360 ~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s-~Dg~laSgs~ 438 (1149)
.++ .++.+++++.
T Consensus 125 ------------------------------------------------------------------~~~p~~~~v~~~~~ 138 (369)
T 2hz6_A 125 ------------------------------------------------------------------SLSPSTSLLYLGRT 138 (369)
T ss_dssp --------------------------------------------------------------------------EEEEEE
T ss_pred ------------------------------------------------------------------cccccCCEEEEEec
Confidence 011 2345788899
Q ss_pred CCeEEEEeC-CCCeeEeeecCCccEEEEEecC-----CEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEE
Q 001123 439 NGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFG-----SQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK 503 (1149)
Q Consensus 439 DgtIrlWD~-tG~~l~tl~gH~~~V~sls~dG-----~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~s 503 (1149)
|++|+.||. +|+.+-.+..+. ..+.+.++ ..+++++.||.|+.||.+ |+++..+. ..++|..
T Consensus 139 dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~pv~~ 207 (369)
T 2hz6_A 139 EYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-YASPVVA 207 (369)
T ss_dssp EEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-CSSCEEE
T ss_pred CCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-CCCceEE
Confidence 999999999 898776554321 12222333 678889999999999975 88776655 3445554
No 225
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.70 E-value=5.9e-07 Score=112.19 Aligned_cols=234 Identities=10% Similarity=0.025 Sum_probs=134.1
Q ss_pred CCceEEEEEcCCCCEEE-----EEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCc-
Q 001123 191 VSSVMCMVGDEASGVVW-----SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG- 263 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~La-----SGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgT- 263 (1149)
...+..++|||||++|| +|+.+.+|++||+++|.. ....+.+. ...+++|+ ||+ |+.++.|.+
T Consensus 128 ~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~-------~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~ 197 (693)
T 3iuj_A 128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQP-------LETPLKDV--KFSGISWL-GNEGFFYSSYDKPD 197 (693)
T ss_dssp CCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSE-------EEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC
T ss_pred cEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCC-------CccccCCc--eeccEEEe-CCCEEEEEEecCcc
Confidence 34577889999999888 455567899999998762 11122221 12567899 997 887777754
Q ss_pred ------------EEEEeCCCcce--eeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEE-E
Q 001123 264 ------------IKIWPWEAIEK--ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-S 328 (1149)
Q Consensus 264 ------------IRVWdl~t~~~--~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~-S 328 (1149)
|++|++.+.+. .+.+..... +. .....+..++++..++ +
T Consensus 198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~----------------~~----------~~~~~~~~SpDg~~l~~~ 251 (693)
T 3iuj_A 198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPA----------------QH----------HRYVGATVTEDDRFLLIS 251 (693)
T ss_dssp -------CCCCEEEEEETTSCGGGCEEEESCSGG----------------GC----------CSEEEEEECTTSCEEEEE
T ss_pred cccccccCCCcEEEEEECCCCcccceEEEecCCC----------------CC----------eEEEEEEEcCCCCEEEEE
Confidence 99999876432 111111000 00 0122334556665443 2
Q ss_pred ec----CCceEEEEcCCcc-EEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecC
Q 001123 329 AG----FLSFALWDARTRE-LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA 403 (1149)
Q Consensus 329 as----d~tIrLWD~~TG~-~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~ 403 (1149)
.. ...|.+||+.+++ ....+..+..
T Consensus 252 ~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~-------------------------------------------------- 281 (693)
T 3iuj_A 252 AANSTSGNRLYVKDLSQENAPLLTVQGDLD-------------------------------------------------- 281 (693)
T ss_dssp EESSSSCCEEEEEETTSTTCCCEEEECSSS--------------------------------------------------
T ss_pred EccCCCCcEEEEEECCCCCCceEEEeCCCC--------------------------------------------------
Confidence 22 1368888887653 1122211100
Q ss_pred CcEEEEeecccccCCCCceEEEEEcCCCcEE-EEeC---CCeEEEEeC-CCCe--eEeeecCCccEEEEEecCCEEEEee
Q 001123 404 DAVRRVAAKGGFGDDNRRTEALTTSIDGMIW-TGGA---NGLLLQWDP-NGNR--LQDFQYLPFAVQCLCTFGSQIWVGY 476 (1149)
Q Consensus 404 d~v~rv~~~g~~~~~~~~V~ava~s~Dg~la-Sgs~---DgtIrlWD~-tG~~--l~tl~gH~~~V~sls~dG~~LaSGs 476 (1149)
.......++++.++ .... .+.|..||+ ++.+ .+++..|...+.+++++|++|+...
T Consensus 282 -----------------~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~ 344 (693)
T 3iuj_A 282 -----------------ADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEY 344 (693)
T ss_dssp -----------------SCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEE
T ss_pred -----------------ceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEE
Confidence 00011112223333 3322 367999999 4544 4677777665558888999888777
Q ss_pred cCc---EEEEEeCCCceeeeee-ccCCCeEEEE--ecCCeEEeecCC----CceeeeeccC
Q 001123 477 MNG---IVQVLDLEGNLLGGWV-AHSSPVIKMA--VGAGYIFTLANH----GGIRGWNVTS 527 (1149)
Q Consensus 477 ~DG---tIrlWD~~G~~l~~l~-gH~~~V~sLa--~Dg~~LaSgS~D----gtIRlWdl~s 527 (1149)
.++ .|++||++|.....+. .+.+.|..++ ++++.++-...+ ++|..||+.+
T Consensus 345 ~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~ 405 (693)
T 3iuj_A 345 MVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKS 405 (693)
T ss_dssp EETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTT
T ss_pred EECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCC
Confidence 554 7999999877655554 2445565655 466655533222 6788888754
No 226
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.68 E-value=5.8e-06 Score=93.17 Aligned_cols=216 Identities=13% Similarity=0.009 Sum_probs=127.9
Q ss_pred EEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcc
Q 001123 195 MCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIE 273 (1149)
Q Consensus 195 ~~lafs~d-g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~ 273 (1149)
.+.+|+++ +.++|++..++.|..||..++. ...+. +...|.+++++++|+++.++.++ |.+||.++++
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~---------~~~~~-~~~~v~~i~~~~dg~l~v~~~~g-l~~~d~~~g~ 120 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASGR---------KTVHA-LPFMGSALAKISDSKQLIASDDG-LFLRDTATGV 120 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTE---------EEEEE-CSSCEEEEEEEETTEEEEEETTE-EEEEETTTCC
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCCc---------EEEEE-CCCcceEEEEeCCCeEEEEECCC-EEEEECCCCc
Confidence 45678987 5688888899999999998754 23332 35689999999999977666555 9999987654
Q ss_pred eeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecC-----CceEEEEcCCccEEEEE
Q 001123 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-----LSFALWDARTRELLKVF 348 (1149)
Q Consensus 274 ~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd-----~tIrLWD~~TG~~L~~l 348 (1149)
.......... . ....+..++.++++..+++... ....||.+.+|+.....
T Consensus 121 ~~~~~~~~~~----------------~---------~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~~~~ 175 (326)
T 2ghs_A 121 LTLHAELESD----------------L---------PGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLF 175 (326)
T ss_dssp EEEEECSSTT----------------C---------TTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEE
T ss_pred EEEEeeCCCC----------------C---------CCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEEEee
Confidence 2211000000 0 0012445666666543332211 11223222122111000
Q ss_pred ecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEc
Q 001123 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (1149)
Q Consensus 349 ~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s 428 (1149)
.+......++++
T Consensus 176 --------------------------------------------------------------------~~~~~~~~i~~s 187 (326)
T 2ghs_A 176 --------------------------------------------------------------------ADISIPNSICFS 187 (326)
T ss_dssp --------------------------------------------------------------------EEESSEEEEEEC
T ss_pred --------------------------------------------------------------------CCCcccCCeEEc
Confidence 000123456788
Q ss_pred CCCc-EE-EEeCCCeEEEEeC---CC-Ce-----eEeeecCCccEEEEEe--cCCEEEEeecCcEEEEEeCCCceeeeee
Q 001123 429 IDGM-IW-TGGANGLLLQWDP---NG-NR-----LQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGWV 495 (1149)
Q Consensus 429 ~Dg~-la-Sgs~DgtIrlWD~---tG-~~-----l~tl~gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~G~~l~~l~ 495 (1149)
+||. ++ +.+.++.|.+||. +| +. +..+..+......++. +|...++...++.|.+||.+|+.+..+.
T Consensus 188 ~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~ 267 (326)
T 2ghs_A 188 PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYE 267 (326)
T ss_dssp TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEE
T ss_pred CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEEE
Confidence 8885 54 4455789999997 35 32 2223333345666766 4665555556789999999888888888
Q ss_pred ccCCCeEEEEe---cCCeEEee
Q 001123 496 AHSSPVIKMAV---GAGYIFTL 514 (1149)
Q Consensus 496 gH~~~V~sLa~---Dg~~LaSg 514 (1149)
.+...+.++++ |++.|+.+
T Consensus 268 ~~~~~~~~~af~g~d~~~L~vt 289 (326)
T 2ghs_A 268 VPGKQTTCPAFIGPDASRLLVT 289 (326)
T ss_dssp CSCSBEEEEEEESTTSCEEEEE
T ss_pred CCCCCcEEEEEecCCCCEEEEE
Confidence 88778888885 44555433
No 227
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=98.67 E-value=3.7e-07 Score=101.52 Aligned_cols=46 Identities=20% Similarity=0.349 Sum_probs=36.8
Q ss_pred ccCcceeEEEEEEeceEEEEeeecccccc------hhHHHHHHHHHHHHHhc
Q 001123 674 IGNKGAVGLRVRVYDRIMCFVNCHFAAHL------EAVNRRNADFDHVYRTM 719 (1149)
Q Consensus 674 ~gNKGaV~ir~~~~~t~lcFVn~HLaA~~------~~~~~Rn~d~~~I~~~l 719 (1149)
..++|++.+++.+.+..+.|+|+||.+.. .....|.+++..|.+.+
T Consensus 128 ~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i 179 (306)
T 2ddr_A 128 LSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFI 179 (306)
T ss_dssp CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHH
T ss_pred hcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999884 24567888887776653
No 228
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.66 E-value=1.1e-06 Score=110.40 Aligned_cols=105 Identities=12% Similarity=0.067 Sum_probs=72.3
Q ss_pred eEEEEEcCCCc-EEEEeCC-----CeEEEEeC-CC--CeeEeeecCCccEE-EEEecCCEEEEeecC----cEEEEEeCC
Q 001123 422 TEALTTSIDGM-IWTGGAN-----GLLLQWDP-NG--NRLQDFQYLPFAVQ-CLCTFGSQIWVGYMN----GIVQVLDLE 487 (1149)
Q Consensus 422 V~ava~s~Dg~-laSgs~D-----gtIrlWD~-tG--~~l~tl~gH~~~V~-sls~dG~~LaSGs~D----GtIrlWD~~ 487 (1149)
+..+.+||||+ |+..+.+ ..|.+||+ ++ ++.+.+..+...+. .+..+|++|+..+.+ +.|.+||++
T Consensus 270 ~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~ 349 (741)
T 1yr2_A 270 GHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLS 349 (741)
T ss_dssp EEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECS
T ss_pred EEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCC
Confidence 45667899996 6655543 38999999 55 42666766554443 446789999888764 459999987
Q ss_pred C--ce-eeeeeccCCCeEEEEe-cCCeEEeecCCCceeeeecc
Q 001123 488 G--NL-LGGWVAHSSPVIKMAV-GAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 488 G--~~-l~~l~gH~~~V~sLa~-Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
+ .. ...+..|...+.++++ ++.++++...|+..+||.+.
T Consensus 350 ~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 350 GSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp SSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEE
T ss_pred CCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEe
Confidence 4 23 3334445555556765 56678899999999999765
No 229
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=98.61 E-value=8.1e-08 Score=103.67 Aligned_cols=124 Identities=16% Similarity=0.092 Sum_probs=63.4
Q ss_pred EEEEEEeCCCCCCchhhcccccCCCCCcceEEEEeeccccccchhhhhhhhhhccCCCCcchhhHHHHHhcccCCCCcEE
Q 001123 555 LAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFE 634 (1149)
Q Consensus 555 ~v~TWNv~~~~~~~~~l~~wl~~~~~~~Di~viGlQEi~~~~~~~~~~~~ke~~~~~~~~~~~~W~~~i~~~L~~~~~y~ 634 (1149)
.+.||||++.....+.+.+++.. .+||| |+|||+......+ ..+.+. . .++.|.
T Consensus 2 rv~t~Nv~~~~~~~~~i~~~i~~--~~~DI--v~LQE~~~~~~~~-------------------~~~~~~-~--~gy~~~ 55 (256)
T 2jc4_A 2 KITTWNVNSLNVRLPQVQNLLAD--NPPDI--LVLQELKLDQDKF-------------------PAAALQ-M--MGWHCV 55 (256)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHS--SCCSE--EEEECCCSCGGGS-------------------CHHHHH-T--TTCEEE
T ss_pred EEEEEEcCCcHHHHHHHHHHHHh--cCCCE--EEEEeeccchhcC-------------------CHhHHh-h--cCCeEE
Confidence 58999999654333456677763 45776 7889996532100 011121 1 233332
Q ss_pred EEeeeccceeeeeeeeeccccCccceeEeeeEeecccccccCcceeEEEEEEeceEEEEeeecccccch----hHHHHHH
Q 001123 635 RVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE----AVNRRNA 710 (1149)
Q Consensus 635 ~v~s~qL~Gl~l~vfvr~~l~~~i~~v~~~~v~tG~~g~~gNKGaV~ir~~~~~t~lcFVn~HLaA~~~----~~~~Rn~ 710 (1149)
... +-..--+++|.|..+ ..+. .++.+...+..+..+.+.+. .+.++|+|+.+... ..+.|.+
T Consensus 56 ~~~--~~~~~G~ailsr~~~----~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~v~~~h~~~~~~~~~~~~~~r~~ 122 (256)
T 2jc4_A 56 WSG--QKTYNGVAIVSRSVP----QDVH-----FGLPALPDDPQRRVIAATVS--GVRVINVYCVNGEALDSPKFKYKEQ 122 (256)
T ss_dssp EEC--CSSSCCEEEEESSCC----EEEE-----ESCTTSTTCCSCCEEEEEET--TEEEEEEECCCCCSTTSHHHHHHHH
T ss_pred ECC--CCcceEEEEEECCCh----HHhe-----ecCCCCccCCcCcEEEEEeC--CEEEEEEEecCCCCCCcHhHHHHHH
Confidence 222 222223556677643 2222 13322212222233444553 79999999988753 4555655
Q ss_pred HHHHHHH
Q 001123 711 DFDHVYR 717 (1149)
Q Consensus 711 d~~~I~~ 717 (1149)
.+..|.+
T Consensus 123 ~~~~l~~ 129 (256)
T 2jc4_A 123 WFAALTE 129 (256)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 230
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.59 E-value=1.6e-05 Score=87.28 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=51.3
Q ss_pred eEEEEEcCCCcEEEEe-CCCeEEEEeCC-CCeeEeeecCCccEEEEEe--cCCEEEEee-cCcEEEEEeCC
Q 001123 422 TEALTTSIDGMIWTGG-ANGLLLQWDPN-GNRLQDFQYLPFAVQCLCT--FGSQIWVGY-MNGIVQVLDLE 487 (1149)
Q Consensus 422 V~ava~s~Dg~laSgs-~DgtIrlWD~t-G~~l~tl~gH~~~V~sls~--dG~~LaSGs-~DGtIrlWD~~ 487 (1149)
+..++++++|.++.+. .++.|.+||.. |+.+..+..+...+.++++ +|++|++++ .++.|..||++
T Consensus 228 p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 3456788899877554 67899999995 8888888777778888876 688676665 56889999975
No 231
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.59 E-value=1e-05 Score=93.92 Aligned_cols=271 Identities=9% Similarity=0.011 Sum_probs=156.2
Q ss_pred EEEcCCCCEEEEEeC-----CCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEE----------C
Q 001123 197 MVGDEASGVVWSGHR-----DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS----------E 260 (1149)
Q Consensus 197 lafs~dg~~LaSGS~-----DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS----------~ 260 (1149)
.+..|+++.|+.... +++|-+.|..+++ .+.++..-..+ .|++||||+ |+.++ .
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~--------v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~ 107 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGR--------VIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGER 107 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTE--------EEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCe--------EEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCC
Confidence 445789988887765 7899999998754 34455444455 499999998 65443 4
Q ss_pred CCcEEEEeCCCcceeeecCCCc-ceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec---CCceEE
Q 001123 261 GGGIKIWPWEAIEKALSLKPEE-RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFAL 336 (1149)
Q Consensus 261 DgTIRVWdl~t~~~~~~l~~~~-~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas---d~tIrL 336 (1149)
+++|.+||+.+.+....+.... ... .. ...-..+++++++.++|.+. +++|.+
T Consensus 108 ~~~VsviD~~t~~v~~~I~v~~g~r~--------------~~---------g~~P~~~a~spDGk~lyVan~~~~~~VsV 164 (386)
T 3sjl_D 108 TDYVEVFDPVTLLPTADIELPDAPRF--------------LV---------GTYPWMTSLTPDGKTLLFYQFSPAPAVGV 164 (386)
T ss_dssp EEEEEEECTTTCCEEEEEEETTCCCC--------------CB---------SCCGGGEEECTTSSEEEEEECSSSCEEEE
T ss_pred CCEEEEEECCCCeEEEEEECCCcccc--------------cc---------CCCCceEEEcCCCCEEEEEEcCCCCeEEE
Confidence 7899999998865433221000 000 00 01122356778888877653 468999
Q ss_pred EEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCC-c-EEEEeeccc
Q 001123 337 WDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-A-VRRVAAKGG 414 (1149)
Q Consensus 337 WD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d-~-v~rv~~~g~ 414 (1149)
+|+.+++.+.++...+.. ...+.+. ...+...++++.++..... + +..... ..
T Consensus 165 ID~~t~~vv~tI~v~g~~----~~~P~g~--------------------~~~~~~~~DG~~~~v~~~~~g~v~~~~~-~~ 219 (386)
T 3sjl_D 165 VDLEGKAFKRMLDVPDCY----HIFPTAP--------------------DTFFMHCRDGSLAKVAFGTEGTPEITHT-EV 219 (386)
T ss_dssp EETTTTEEEEEEECCSEE----EEEEEET--------------------TEEEEEETTSCEEEEECCSSSCCEEEEC-CC
T ss_pred EECCCCcEEEEEECCCcc----eeecCCC--------------------ceeEEECCCCCEEEEECCCCCeEEEeec-ce
Confidence 999999999988654421 0000000 0001122223222222211 1 110000 11
Q ss_pred ccCCCCceE-EEEE-cCCCcEEEEeCCCeEEEEeCCCC---eeEeee------------cCCccEEEEEecCCEEEEeec
Q 001123 415 FGDDNRRTE-ALTT-SIDGMIWTGGANGLLLQWDPNGN---RLQDFQ------------YLPFAVQCLCTFGSQIWVGYM 477 (1149)
Q Consensus 415 ~~~~~~~V~-ava~-s~Dg~laSgs~DgtIrlWD~tG~---~l~tl~------------gH~~~V~sls~dG~~LaSGs~ 477 (1149)
+......+. ...+ .++|+++-.+.+|+|.+.|+.+. .+..+. .......++..++++|+....
T Consensus 220 ~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~ 299 (386)
T 3sjl_D 220 FHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVD 299 (386)
T ss_dssp CSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEE
T ss_pred eccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEec
Confidence 111111111 1233 57888666777899999999543 333332 112233455667888888753
Q ss_pred ----------CcEEEEEeCC-Cceeeeee-ccCCCeEEEE--ecCC-eEEee-cCCCceeeeeccC
Q 001123 478 ----------NGIVQVLDLE-GNLLGGWV-AHSSPVIKMA--VGAG-YIFTL-ANHGGIRGWNVTS 527 (1149)
Q Consensus 478 ----------DGtIrlWD~~-G~~l~~l~-gH~~~V~sLa--~Dg~-~LaSg-S~DgtIRlWdl~s 527 (1149)
...|.+.|+. ++.++.+. |+ .+++|+ +|++ +|++. ..+++|-++|+.+
T Consensus 300 ~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t 363 (386)
T 3sjl_D 300 QRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDKTLYIHDAES 363 (386)
T ss_dssp ECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEETTTTEEEEEETTT
T ss_pred cccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 3689999976 77776654 44 466666 6886 66664 5699999999865
No 232
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.56 E-value=1.3e-06 Score=101.76 Aligned_cols=175 Identities=8% Similarity=0.051 Sum_probs=111.3
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--CC-CCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEE
Q 001123 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL--LD-SDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIW 267 (1149)
Q Consensus 192 ~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~--~~-~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVW 267 (1149)
.+++.|++++..+++++|+.|+ +++|++.... .. ....+... ....+.+ |+.|+| |+. |+.+ .|+.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 4688999999999999999985 5569965321 00 00012222 2345777 999999 676 6666 89999999
Q ss_pred eCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEE
Q 001123 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKV 347 (1149)
Q Consensus 268 dl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~ 347 (1149)
|+.+........... ..+..+...+. ..++...++++.+||+.+++....
T Consensus 112 dv~sl~~~~~~~~~~-----------------------------~~v~~i~~~~p-~~av~~~dG~L~v~dl~~~~~~~~ 161 (388)
T 1xip_A 112 DLEELSEFRTVTSFE-----------------------------KPVFQLKNVNN-TLVILNSVNDLSALDLRTKSTKQL 161 (388)
T ss_dssp ESSSTTCEEEEEECS-----------------------------SCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEEE
T ss_pred EchhhhccCccceee-----------------------------cceeeEEecCC-CEEEEECCCCEEEEEccCCccccc
Confidence 997643211111000 01111112121 133344678999999987654210
Q ss_pred EecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEE
Q 001123 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (1149)
Q Consensus 348 l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~ 427 (1149)
...|.++++
T Consensus 162 -----------------------------------------------------------------------~~~Vs~v~W 170 (388)
T 1xip_A 162 -----------------------------------------------------------------------AQNVTSFDV 170 (388)
T ss_dssp -----------------------------------------------------------------------EESEEEEEE
T ss_pred -----------------------------------------------------------------------cCCceEEEE
Confidence 013567889
Q ss_pred cCCCcEEEEeCCCeEEEEeCCC-Ce--eEee------e---cCCccEEEEEec--CCEEEE
Q 001123 428 SIDGMIWTGGANGLLLQWDPNG-NR--LQDF------Q---YLPFAVQCLCTF--GSQIWV 474 (1149)
Q Consensus 428 s~Dg~laSgs~DgtIrlWD~tG-~~--l~tl------~---gH~~~V~sls~d--G~~LaS 474 (1149)
||+| ++.|..||+|++|+..+ ++ .+++ . +|...|.+|.+. ++++++
T Consensus 171 SpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 171 TNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp CSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred cCCc-eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 9999 78899999999999955 43 5566 2 477889999874 556654
No 233
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.54 E-value=1.8e-05 Score=90.24 Aligned_cols=267 Identities=14% Similarity=0.074 Sum_probs=148.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecC---------CCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcc
Q 001123 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH---------RGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIE 273 (1149)
Q Consensus 203 g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH---------~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~ 273 (1149)
+..|+.++.++.|..+|..+|+ ...+..-. ...+.+.....++.|+.++.|+.|..+|.++++
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~--------~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~ 124 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGK--------EIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGT 124 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCC--------EEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCC
T ss_pred CCEEEEEcCCCeEEEEEccCCc--------eeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCC
Confidence 5678888999999999998875 23333221 234444434446778999999999999998877
Q ss_pred eeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEe-cCCceEEEEcCCccEEEEEecCC
Q 001123 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVFNIDG 352 (1149)
Q Consensus 274 ~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sa-sd~tIrLWD~~TG~~L~~l~~~g 352 (1149)
........... .... +.. +..++.+ .++.+..+|+.+|+.+..+....
T Consensus 125 ~~W~~~~~~~~-------------------------~~~p----~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~ 173 (376)
T 3q7m_A 125 VAWQTKVAGEA-------------------------LSRP----VVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDM 173 (376)
T ss_dssp EEEEEECSSCC-------------------------CSCC----EEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC
T ss_pred EEEEEeCCCce-------------------------EcCC----EEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCC
Confidence 54332111000 0000 011 2344443 45679999999999998876543
Q ss_pred ceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccc-cCC--CCc---eEEEE
Q 001123 353 QIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGF-GDD--NRR---TEALT 426 (1149)
Q Consensus 353 ~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~-~~~--~~~---V~ava 426 (1149)
.... ........+... .++.... .+.........+..++...... .+. ..+ +....
T Consensus 174 ~~~~---~~~~~~~~~~~~---~v~~g~~------------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p 235 (376)
T 3q7m_A 174 PSLS---LRGESAPTTAFG---AAVVGGD------------NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTP 235 (376)
T ss_dssp --------CCCCCCEEETT---EEEECCT------------TTEEEEEETTTCCEEEEEECCC-----------CCCCCC
T ss_pred Ccee---ecCCCCcEEECC---EEEEEcC------------CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCc
Confidence 2210 000000000000 0111100 0000000111111111110000 000 000 00000
Q ss_pred EcCCCcEEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEecCCEEEEeecCcEEEEEeCC-Cceeeeeec-cCCCeEE
Q 001123 427 TSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA-HSSPVIK 503 (1149)
Q Consensus 427 ~s~Dg~laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~g-H~~~V~s 503 (1149)
...++.++.++.++.|..+|. +|+.+-.... ....++..++..|+.++.++.|..+|.+ |+.+..... +...+.+
T Consensus 236 ~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 313 (376)
T 3q7m_A 236 VVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTS 313 (376)
T ss_dssp EEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCC
T ss_pred EEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccC
Confidence 112577888889999999999 8987755442 3455677789999999999999999975 887655542 2223344
Q ss_pred EEecCCeEEeecCCCceeeeeccCC
Q 001123 504 MAVGAGYIFTLANHGGIRGWNVTSP 528 (1149)
Q Consensus 504 La~Dg~~LaSgS~DgtIRlWdl~sp 528 (1149)
....+..|+.++.++.+..+|..+.
T Consensus 314 ~~~~~~~l~v~~~~g~l~~~d~~tG 338 (376)
T 3q7m_A 314 PVLYNGNLVVGDSEGYLHWINVEDG 338 (376)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTC
T ss_pred CEEECCEEEEEeCCCeEEEEECCCC
Confidence 4456778888999999999997653
No 234
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.48 E-value=0.00011 Score=84.93 Aligned_cols=271 Identities=8% Similarity=-0.067 Sum_probs=145.6
Q ss_pred EEcCCCCEEEEEeC--CC---eEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEE----------CC
Q 001123 198 VGDEASGVVWSGHR--DG---RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS----------EG 261 (1149)
Q Consensus 198 afs~dg~~LaSGS~--DG---tIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS----------~D 261 (1149)
...+++++++.... .. +|.++|..+++ .+.++..-..+ .++|||||+ |+.+. .+
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~--------~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~ 96 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGS--------ILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRT 96 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCe--------EEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCC
Confidence 44577877777653 22 89999998764 24444433445 899999998 65443 47
Q ss_pred CcEEEEeCCCcceeeecCCC-cceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec---CCceEEE
Q 001123 262 GGIKIWPWEAIEKALSLKPE-ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALW 337 (1149)
Q Consensus 262 gTIRVWdl~t~~~~~~l~~~-~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas---d~tIrLW 337 (1149)
++|.+||..+.+....+... .... . . ...-..+++++++.+|+.+. +++|.++
T Consensus 97 ~~v~viD~~t~~~~~~i~~~~~~~~--------------~---~------g~~p~~~~~spDG~~l~v~n~~~~~~v~vi 153 (373)
T 2mad_H 97 DYVEVFDPVTFLPIADIELPDAPRF--------------D---V------GPYSWMNANTPNNADLLFFQFAAGPAVGLV 153 (373)
T ss_pred CeEEEEECCCCcEEEEEECCCcccc--------------c---c------CCCccceEECCCCCEEEEEecCCCCeEEEE
Confidence 88999999775533222100 0000 0 0 01123466778888887654 3679999
Q ss_pred EcCCccEEEE-EecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEE-EEeecccc
Q 001123 338 DARTRELLKV-FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVR-RVAAKGGF 415 (1149)
Q Consensus 338 D~~TG~~L~~-l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~-rv~~~g~~ 415 (1149)
| .+++.+.. +...+.+ .+.+..... .+.+.+++..++......+. +......+
T Consensus 154 D-~t~~~~~~~i~~~~~~----~~~~~~~~~--------------------~~~~~~dg~~~~vd~~g~~~~~~~~~~~~ 208 (373)
T 2mad_H 154 V-QGGSSDDQLLSSPTCY----HIHPGAPST--------------------FYLLCAQGGLAKTDHAGGAAGAGLVGAML 208 (373)
T ss_pred E-CCCCEEeEEcCCCceE----EEEeCCCce--------------------EEEEcCCCCEEEEECCCcEEEEEeccccc
Confidence 9 99998887 6543322 111110000 01111122211111111111 00000001
Q ss_pred cCCCCce-EEEEEcCC-CcEEEEeCCCeEEEEeCC-C--CeeEeeecC----------Ccc--EEEEEecCCEEEEeec-
Q 001123 416 GDDNRRT-EALTTSID-GMIWTGGANGLLLQWDPN-G--NRLQDFQYL----------PFA--VQCLCTFGSQIWVGYM- 477 (1149)
Q Consensus 416 ~~~~~~V-~ava~s~D-g~laSgs~DgtIrlWD~t-G--~~l~tl~gH----------~~~--V~sls~dG~~LaSGs~- 477 (1149)
.+ ...+ ....+.++ +.++..+..+.|.+.|+. + +.+..+.-. ... ...++.+|++|+++..
T Consensus 209 ~~-~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~ 287 (373)
T 2mad_H 209 TA-AQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSE 287 (373)
T ss_pred cC-CcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEecc
Confidence 11 1111 11223333 444444467889889984 3 222333210 111 2345668888888653
Q ss_pred ---------CcEEEEEeCC-CceeeeeeccCCCeEEEE--ecCC-eEEeec-CCCceeeeeccCC
Q 001123 478 ---------NGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAG-YIFTLA-NHGGIRGWNVTSP 528 (1149)
Q Consensus 478 ---------DGtIrlWD~~-G~~l~~l~gH~~~V~sLa--~Dg~-~LaSgS-~DgtIRlWdl~sp 528 (1149)
++.|.+.|.. ++.+..+..- ....+++ +||+ .++++. .+++|.+||+.+.
T Consensus 288 ~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 288 QSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred CCcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 4689999986 6777776532 2355555 6898 788877 5899999998753
No 235
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.45 E-value=0.0004 Score=75.10 Aligned_cols=259 Identities=13% Similarity=0.112 Sum_probs=146.1
Q ss_pred eEEEEEee-CCeEEEe--CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeec-CCceEEEEEcCCCCEEEEE
Q 001123 134 FLRTIVCT-EEQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSG 209 (1149)
Q Consensus 134 ~l~~l~~~-~~~l~ag--~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~lafs~dg~~LaSG 209 (1149)
..+.|+.+ ++.+|.+ .++.|.+||.. +..... . +.. ...+.+++++++|.+.++.
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~------------------~--~~~~~~~~~~i~~~~~g~l~v~~ 79 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEF------------------E--VPTPDAKVMCLIVSSLGDIWFTE 79 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE------------------E--CSSTTCCEEEEEECTTSCEEEEE
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEE------------------E--CCCCCCcceeEEECCCCCEEEEe
Confidence 33455655 5678765 36789999976 332111 0 111 3467889999999988887
Q ss_pred eCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEE-ECCCcEEEEeCCCccee-eecCCCcceeeE
Q 001123 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSG-SEGGGIKIWPWEAIEKA-LSLKPEERHTAA 287 (1149)
Q Consensus 210 S~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SG-S~DgTIRVWdl~t~~~~-~~l~~~~~~~~a 287 (1149)
..++.|..||.. +.. ....+.++...+.+|+++++|+|+-+ ..++.|..|+.+ ++.. ..+..
T Consensus 80 ~~~~~v~~~d~~-g~~-------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~------- 143 (300)
T 2qc5_A 80 NGANKIGKLSKK-GGF-------TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPN------- 143 (300)
T ss_dssp TTTTEEEEECTT-SCE-------EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSS-------
T ss_pred cCCCeEEEECCC-CCe-------EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCC-------
Confidence 778999999987 431 11222334467999999999997644 447889999876 3221 10000
Q ss_pred EEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEEEec--CCceeeEEeeccCC
Q 001123 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNI--DGQIENRVDMSLLP 364 (1149)
Q Consensus 288 ~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~l~~--~g~~~~~v~~S~~~ 364 (1149)
.......++.++++...++.. .+.|..+|. +|+... +.. .......+.+.+
T Consensus 144 ----------------------~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~-- 197 (300)
T 2qc5_A 144 ----------------------KGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGN-- 197 (300)
T ss_dssp ----------------------TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECT--
T ss_pred ----------------------CCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECC--
Confidence 012345566767665333333 467888998 666543 221 111111222222
Q ss_pred CccccccceeeEEecCCCCccceeeeeeccccceEeecC-CcEEEEeeccc-----ccCCCCceEEEEEcCCCcEEEEeC
Q 001123 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA-DAVRRVAAKGG-----FGDDNRRTEALTTSIDGMIWTGGA 438 (1149)
Q Consensus 365 ~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~-d~v~rv~~~g~-----~~~~~~~V~ava~s~Dg~laSgs~ 438 (1149)
++...++... +.+.++...+. +......+.++++.++|.|+.+..
T Consensus 198 -----------------------------~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~ 248 (300)
T 2qc5_A 198 -----------------------------DGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEW 248 (300)
T ss_dssp -----------------------------TSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEET
T ss_pred -----------------------------CCCEEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEecc
Confidence 1111111111 11222221110 122345677899999999877664
Q ss_pred -CCeEEEEeCCCCeeEe-eecCCccEEEEEec--CCEEEEeecCcEEEEEeC
Q 001123 439 -NGLLLQWDPNGNRLQD-FQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDL 486 (1149)
Q Consensus 439 -DgtIrlWD~tG~~l~t-l~gH~~~V~sls~d--G~~LaSGs~DGtIrlWD~ 486 (1149)
++.|..||.+|+.... +..+...+.++..+ |+ |+.++.. .|..+|.
T Consensus 249 ~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~-~i~~~~p 298 (300)
T 2qc5_A 249 GANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGS-VWFALKC-KIGKLNL 298 (300)
T ss_dssp TTTEEEEECTTSCEEEEECCSTTCCCCCEEECTTSC-EEEECSS-EEEEEEE
T ss_pred CCCeEEEECCCCcEEEEECCccCCccceeEeCCCCC-EEEEccC-ceEEeCC
Confidence 5899999997754322 23234556777664 55 5545444 6766664
No 236
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.45 E-value=0.00027 Score=89.33 Aligned_cols=313 Identities=12% Similarity=0.161 Sum_probs=180.8
Q ss_pred EEEEEee-CCeEEEeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCc-eEEEEEcCCCCEEEEEeCC
Q 001123 135 LRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSS-VMCMVGDEASGVVWSGHRD 212 (1149)
Q Consensus 135 l~~l~~~-~~~l~ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~-V~~lafs~dg~~LaSGS~D 212 (1149)
+..|..+ ++.+|.+.+++|.+||.+++..... ..... ... |.++..+++|. ||-|..+
T Consensus 133 i~~i~~d~~g~lwi~t~~gl~~~~~~~~~~~~~------------------~~~~~-~~~~i~~i~~d~~g~-lwigt~~ 192 (795)
T 4a2l_A 133 VNGIEEISPEQLLISTPEGLIMFDIKESKFIDD------------------SFSTA-MHKTIASTLYRQGDQ-IYIGTST 192 (795)
T ss_dssp CCEEEEEETTEEEEEETTEEEEEETTTTEEECS------------------SSCHH-HHTCCEEEEEEETTE-EEEEESS
T ss_pred EEEEEECCCCCEEEEECCceEEEECCCCEEEec------------------cCCCC-CCcceEEEEECCCCC-EEEEECC
Confidence 4455554 7889998778899999765432211 00000 123 88898888875 5557766
Q ss_pred CeEEEEECCCCCCCCCCCccceEEe--ecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEe
Q 001123 213 GRIMCWKMNARLLDSDDGFGEVLSW--QAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (1149)
Q Consensus 213 GtIRvWdl~~g~~~~~~~~~~~~~l--~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~ 290 (1149)
+-|..|+..++.. ..+ ..+...|.+|...++|.||-|+.++-+.+||..+.+... +....
T Consensus 193 ~Gl~~~~~~~~~~---------~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~-~~~~~-------- 254 (795)
T 4a2l_A 193 DGLYTYSITQKTF---------EKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKN-YLHSP-------- 254 (795)
T ss_dssp SCEEEEETTTCCE---------EECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEE-ECCCT--------
T ss_pred CCEEEEeCCCCeE---------EEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEE-eecCC--------
Confidence 5588899876542 111 124567999999999999988866568899986643211 10000
Q ss_pred eeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccc
Q 001123 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMED 370 (1149)
Q Consensus 291 ~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~ 370 (1149)
.... ..+...+.+++.+.++ .+|-+.++.+.+||..+++........... ....
T Consensus 255 ----------~~~~---~l~~~~i~~i~~d~~g-~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~----------~~l~-- 308 (795)
T 4a2l_A 255 ----------SNPK---SISSNYIRSLAMDSQN-RLWIGTFNDLNIYHEGTDSFASYSSNPVEN----------GSLS-- 308 (795)
T ss_dssp ----------TCTT---SCSCSBEEEEEECTTS-CEEEEESSCEEEEETTTTEEEEECCCTTST----------TSCS--
T ss_pred ----------CCcc---ccCCCeEEEEEEcCCC-CEEEEeCChhheEcCCCCeEEEEecCCCCC----------CCCC--
Confidence 0000 0112446777776654 577666668999998887654332111000 0000
Q ss_pred cceeeEEecCCCCccceeeeeeccccceEeecC-CcEEEEeec-ccc---c-------CCCCceEEEEEcCCCcEEEEeC
Q 001123 371 EFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA-DAVRRVAAK-GGF---G-------DDNRRTEALTTSIDGMIWTGGA 438 (1149)
Q Consensus 371 ~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~-d~v~rv~~~-g~~---~-------~~~~~V~ava~s~Dg~laSgs~ 438 (1149)
...+.++.... ...+..|.. +|+.++... ..| . -....|.++....+|.||.|+.
T Consensus 309 ------------~~~i~~i~~D~-~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~ 375 (795)
T 4a2l_A 309 ------------QRSVRSIFMDS-QGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTN 375 (795)
T ss_dssp ------------SSCEEEEEECT-TSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEES
T ss_pred ------------CCcEEEEEEeC-CcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEEC
Confidence 00111111111 223444443 455555321 111 0 0234588898889999999999
Q ss_pred CCeEEEEeC-CCCeeEeeec--------CCccEEEEEec--CCEEEEeecCcEEEEEeCCCceeeeee-----ccCCCeE
Q 001123 439 NGLLLQWDP-NGNRLQDFQY--------LPFAVQCLCTF--GSQIWVGYMNGIVQVLDLEGNLLGGWV-----AHSSPVI 502 (1149)
Q Consensus 439 DgtIrlWD~-tG~~l~tl~g--------H~~~V~sls~d--G~~LaSGs~DGtIrlWD~~G~~l~~l~-----gH~~~V~ 502 (1149)
++-|..||. +++...-... ....|.++..| |+.|+.|+.++-|.+||..+.....+. .+...|.
T Consensus 376 ~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~ 455 (795)
T 4a2l_A 376 DGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVY 455 (795)
T ss_dssp SSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEE
T ss_pred CCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeE
Confidence 988999999 4544322111 23578899775 555999999888999997633333332 2345788
Q ss_pred EEEec--CCeEEeecCCCceeeeecc
Q 001123 503 KMAVG--AGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 503 sLa~D--g~~LaSgS~DgtIRlWdl~ 526 (1149)
++..| |+ |+-|+. +.+..|+..
T Consensus 456 ~i~~d~~g~-lwigt~-~Gl~~~~~~ 479 (795)
T 4a2l_A 456 AILPDGEGN-LWLGTL-SALVRFNPE 479 (795)
T ss_dssp EEEECSSSC-EEEEES-SCEEEEETT
T ss_pred EEEECCCCC-EEEEec-CceeEEeCC
Confidence 88864 44 444444 567778743
No 237
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=98.45 E-value=3.9e-07 Score=98.45 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=25.2
Q ss_pred EEEEEEEeCCCCCCchh-hcccccCCCCCcceEEEEeeccccc
Q 001123 554 ILAGTWNVGQGRASQDA-LISWLGSAASDVGIVVVGLQEVEMG 595 (1149)
Q Consensus 554 i~v~TWNv~~~~~~~~~-l~~wl~~~~~~~Di~viGlQEi~~~ 595 (1149)
+.|.||||++....... +.+++.. .+||| |+|||+...
T Consensus 2 l~v~t~Ni~~~~~~~~~~i~~~i~~--~~~DI--i~LQE~~~~ 40 (259)
T 2jc5_A 2 LKIISANVNGIRSAYKKGFYEYIAA--SGADI--VCVQELKAQ 40 (259)
T ss_dssp EEEEEEECSSHHHHHHTTHHHHHHH--TTCSE--EEEECCCCC
T ss_pred cEEEEEeeccHHHHHHhHHHHHHHh--cCCCE--EEEEEecch
Confidence 56899999865332222 6666653 45775 788999653
No 238
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.44 E-value=8.3e-06 Score=101.97 Aligned_cols=53 Identities=8% Similarity=0.001 Sum_probs=40.7
Q ss_pred CcEEEEEeCC-CceeeeeeccCCCeE-EEEecCCeEEeecCCCceeeeeccCCCC
Q 001123 478 NGIVQVLDLE-GNLLGGWVAHSSPVI-KMAVGAGYIFTLANHGGIRGWNVTSPGP 530 (1149)
Q Consensus 478 DGtIrlWD~~-G~~l~~l~gH~~~V~-sLa~Dg~~LaSgS~DgtIRlWdl~sp~p 530 (1149)
+|+|+.||+. |+.+-....|..... .++..+..++.++.|+.++.||..+...
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~ 508 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEK 508 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCcc
Confidence 4899999975 888777766654332 3456888999999999999999876533
No 239
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.42 E-value=0.00038 Score=87.94 Aligned_cols=316 Identities=15% Similarity=0.217 Sum_probs=181.9
Q ss_pred eeEEEEEee-CCeEEEeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeC
Q 001123 133 CFLRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (1149)
Q Consensus 133 ~~l~~l~~~-~~~l~ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~ 211 (1149)
..+++|..+ .+.+|.|.+++|.+||..++..... ...... + ..+. ...|.++..+++|. ||-|..
T Consensus 263 ~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~--------~~~~~~--~--~~l~-~~~i~~i~~D~~g~-lWigt~ 328 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASY--------SSNPVE--N--GSLS-QRSVRSIFMDSQGG-MWLGTY 328 (795)
T ss_dssp SBEEEEEECTTSCEEEEESSCEEEEETTTTEEEEE--------CCCTTS--T--TSCS-SSCEEEEEECTTSC-EEEEES
T ss_pred CeEEEEEEcCCCCEEEEeCChhheEcCCCCeEEEE--------ecCCCC--C--CCCC-CCcEEEEEEeCCcC-EEEEEC
Confidence 356677776 7899998877999999776542211 000000 0 0122 46799999999875 778888
Q ss_pred CCeEEEEECCCCCCCCCCCccceEEee------c-CCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcceeeecCCCcce
Q 001123 212 DGRIMCWKMNARLLDSDDGFGEVLSWQ------A-HRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERH 284 (1149)
Q Consensus 212 DGtIRvWdl~~g~~~~~~~~~~~~~l~------G-H~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~ 284 (1149)
++-|..|+..++.. ..+. + ....|.+++..++|.||-|+.++-|..|+..++.... +.....
T Consensus 329 ~~Gl~~~~~~~~~~---------~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~-~~~~~~- 397 (795)
T 4a2l_A 329 FGGLNYYHPIRNRF---------KNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTS-YTLQED- 397 (795)
T ss_dssp SSCEEEECGGGGSS---------EEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEE-ECCC---
T ss_pred CCCeEEeCCCcccc---------eEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEE-EecCCC-
Confidence 88899998765431 1111 0 2457999999999999999999889999986543211 100000
Q ss_pred eeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecC-CceEEEEcCCccEEEEEecCCceeeEEeeccC
Q 001123 285 TAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLL 363 (1149)
Q Consensus 285 ~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd-~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~ 363 (1149)
. .. .......+.+++.+.++..+|.+.. +.+.+||..+++...........
T Consensus 398 ----------------~-~~--~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l--------- 449 (795)
T 4a2l_A 398 ----------------E-SA--RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQL--------- 449 (795)
T ss_dssp -----------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCC---------
T ss_pred ----------------C-cc--cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCc---------
Confidence 0 00 0011245777777776654777764 67999999988754322111000
Q ss_pred CCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec-cc---cc-------CCCCceEEEEEcCCCc
Q 001123 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK-GG---FG-------DDNRRTEALTTSIDGM 432 (1149)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~-g~---~~-------~~~~~V~ava~s~Dg~ 432 (1149)
.. ..+.++...+ ...+..|...|+.+.... +. +. -....|.++...++|.
T Consensus 450 ~~------------------~~v~~i~~d~-~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~ 510 (795)
T 4a2l_A 450 VN------------------ENVYAILPDG-EGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKR 510 (795)
T ss_dssp SC------------------SCEEEEEECS-SSCEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCC
T ss_pred CC------------------CeeEEEEECC-CCCEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCC
Confidence 00 0001111111 122333444555544321 11 11 1134678888899999
Q ss_pred EEEEeCCCeEEEEeC-CCCeeEeee-------cCCccEEEEEec-CCEEEEeecCcEEEEEeCCCceeeeee---cc-CC
Q 001123 433 IWTGGANGLLLQWDP-NGNRLQDFQ-------YLPFAVQCLCTF-GSQIWVGYMNGIVQVLDLEGNLLGGWV---AH-SS 499 (1149)
Q Consensus 433 laSgs~DgtIrlWD~-tG~~l~tl~-------gH~~~V~sls~d-G~~LaSGs~DGtIrlWD~~G~~l~~l~---gH-~~ 499 (1149)
||.|+. +-|..||. +++. .+. .+...|.++..| ...|+.|+.. -|..||..+.....+. |- ..
T Consensus 511 lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~~~~~~~gl~~~ 586 (795)
T 4a2l_A 511 LWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQIKRYNTTNGLPNN 586 (795)
T ss_dssp EEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECGGGTCSCS
T ss_pred EEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcEEEeCCCCCCchh
Confidence 999888 55888998 4544 332 133568899875 3457777766 4788997644333332 11 24
Q ss_pred CeEEEEec--CCeEEeecCCCceeeeecc
Q 001123 500 PVIKMAVG--AGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 500 ~V~sLa~D--g~~LaSgS~DgtIRlWdl~ 526 (1149)
.|.++..| |++.++ + ++.|..|+..
T Consensus 587 ~i~~i~~d~~g~lWi~-t-~~Gl~~~~~~ 613 (795)
T 4a2l_A 587 VVYGILEDSFGRLWLS-T-NRGISCFNPE 613 (795)
T ss_dssp CEEEEEECTTSCEEEE-E-TTEEEEEETT
T ss_pred heEEEEECCCCCEEEE-c-CCceEEEcCC
Confidence 68888754 444443 3 3556667643
No 240
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=98.42 E-value=1.4e-06 Score=103.72 Aligned_cols=40 Identities=28% Similarity=0.306 Sum_probs=27.1
Q ss_pred eEEEEEEEEeCCCCCCc----hhhcccccCCCCCcceEEEEeeccccc
Q 001123 552 LKILAGTWNVGQGRASQ----DALISWLGSAASDVGIVVVGLQEVEMG 595 (1149)
Q Consensus 552 ~~i~v~TWNv~~~~~~~----~~l~~wl~~~~~~~Di~viGlQEi~~~ 595 (1149)
-.+.|.||||++..... +.+.+||.. .+|| ||+|||+...
T Consensus 148 ~~LKI~TwNVnGl~~~~kr~~~~i~~~I~~--~~pD--IVcLQEtk~~ 191 (467)
T 2j63_A 148 RMYKFITWNVAGLRGLLKKNASALRAFMEA--EKPD--VLCLQETKLN 191 (467)
T ss_dssp TEEEEEEEECSCHHHHHHHCTTHHHHHHHH--HCCS--EEEEECCCCC
T ss_pred CCeEEEEEEcCCCcccccccHHHHHHHHHH--cCCC--EEEEEecccc
Confidence 35889999999643221 347777764 3577 5789999653
No 241
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.42 E-value=6.4e-05 Score=83.15 Aligned_cols=212 Identities=11% Similarity=0.141 Sum_probs=125.8
Q ss_pred CeE-EEe-CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001123 143 EQL-WAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (1149)
Q Consensus 143 ~~l-~ag-~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl 220 (1149)
+.| |+. .++.|..||.+++... . + .. ...+.+++++++|+++++. ++.|.+||.
T Consensus 25 ~~l~~~d~~~~~i~~~d~~~~~~~-~-----------------~---~~-~~~~~~i~~~~dG~l~v~~--~~~l~~~d~ 80 (297)
T 3g4e_A 25 NSLLFVDIPAKKVCRWDSFTKQVQ-R-----------------V---TM-DAPVSSVALRQSGGYVATI--GTKFCALNW 80 (297)
T ss_dssp TEEEEEETTTTEEEEEETTTCCEE-E-----------------E---EC-SSCEEEEEEBTTSSEEEEE--TTEEEEEET
T ss_pred CEEEEEECCCCEEEEEECCCCcEE-E-----------------E---eC-CCceEEEEECCCCCEEEEE--CCeEEEEEC
Confidence 444 443 4677999998765421 1 1 01 3568899999999966654 568999999
Q ss_pred CCCCCCCCCCccceEEeecC-----CCCEEEEEEeCCCcEEEEEC----------CCcEEEEeCCCcceeeecCCCccee
Q 001123 221 NARLLDSDDGFGEVLSWQAH-----RGPVLSLCISSYGDLWSGSE----------GGGIKIWPWEAIEKALSLKPEERHT 285 (1149)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~GH-----~~~VtsVafSpdG~L~SGS~----------DgTIRVWdl~t~~~~~~l~~~~~~~ 285 (1149)
+++. ...+..+ ...++.++++|+|+||.++. ....+||.+........+.
T Consensus 81 ~~g~---------~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~------ 145 (297)
T 3g4e_A 81 KEQS---------AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF------ 145 (297)
T ss_dssp TTTE---------EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE------
T ss_pred CCCc---------EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe------
Confidence 8754 2222211 24588999999999765442 2345677664321110000
Q ss_pred eEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEe-c-CCceEEEEc--CCccEEEEEecCCceeeEEeec
Q 001123 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-G-FLSFALWDA--RTRELLKVFNIDGQIENRVDMS 361 (1149)
Q Consensus 286 ~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sa-s-d~tIrLWD~--~TG~~L~~l~~~g~~~~~v~~S 361 (1149)
. . -.....+++++++..++-+ . .+.|.+||+ .+|.+... +
T Consensus 146 ~-------------~----------~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~-----~-------- 189 (297)
T 3g4e_A 146 D-------------Q----------VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNR-----R-------- 189 (297)
T ss_dssp E-------------E----------ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEE-----E--------
T ss_pred e-------------c----------cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCc-----E--------
Confidence 0 0 0112456677777655433 2 456888876 45542110 0
Q ss_pred cCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCcEEEEe-CCC
Q 001123 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG-ANG 440 (1149)
Q Consensus 362 ~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~laSgs-~Dg 440 (1149)
++.. +.........+++.++|.||.+. .++
T Consensus 190 --------------~~~~-----------------------------------~~~~~~~p~g~~~d~~G~lwva~~~~~ 220 (297)
T 3g4e_A 190 --------------SVYK-----------------------------------LEKEEQIPDGMCIDAEGKLWVACYNGG 220 (297)
T ss_dssp --------------EEEE-----------------------------------CCGGGCEEEEEEEBTTSCEEEEEETTT
T ss_pred --------------EEEE-----------------------------------CCCCCCCCCeeEECCCCCEEEEEcCCC
Confidence 0000 00001123456788889887655 467
Q ss_pred eEEEEeC-CCCeeEeeecCCccEEEEEec---CCEEEEeecC
Q 001123 441 LLLQWDP-NGNRLQDFQYLPFAVQCLCTF---GSQIWVGYMN 478 (1149)
Q Consensus 441 tIrlWD~-tG~~l~tl~gH~~~V~sls~d---G~~LaSGs~D 478 (1149)
.|.+||. +|+.+..+..+...+.++++. ++.|+.++..
T Consensus 221 ~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 221 RVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred EEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence 8999999 699999998887788888774 4677666543
No 242
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=98.39 E-value=3e-07 Score=101.48 Aligned_cols=40 Identities=23% Similarity=0.376 Sum_probs=26.3
Q ss_pred eEEEEEEEEeCCCCCCchh-hcccccCCCCCcceEEEEeeccccc
Q 001123 552 LKILAGTWNVGQGRASQDA-LISWLGSAASDVGIVVVGLQEVEMG 595 (1149)
Q Consensus 552 ~~i~v~TWNv~~~~~~~~~-l~~wl~~~~~~~Di~viGlQEi~~~ 595 (1149)
-.+.|+||||++....... +..+|.. .+|| ||+|||+...
T Consensus 27 ~~l~v~t~Ni~~~~~~~~~~i~~~i~~--~~~D--Ii~LQE~~~~ 67 (285)
T 2o3h_A 27 ATLKIASWNVDGLRAWIKKKGLDWVKE--EAPD--ILCLQETKCS 67 (285)
T ss_dssp CCEEEEEEECSSHHHHHHTTHHHHHHH--HCCS--EEEEECCCCC
T ss_pred cceEEEEEecccChhhhhhhHHHHHHh--cCCC--EEEEEEeecc
Confidence 4688999999864322222 5666653 3577 5789999653
No 243
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.39 E-value=0.0002 Score=82.67 Aligned_cols=69 Identities=9% Similarity=0.055 Sum_probs=49.7
Q ss_pred EEEEcCCCc-EEEEeC----------CCeEEEEeC-CCCeeEeeecCCccEEEE--EecCC-EEEEee-cCcEEEEEeCC
Q 001123 424 ALTTSIDGM-IWTGGA----------NGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGS-QIWVGY-MNGIVQVLDLE 487 (1149)
Q Consensus 424 ava~s~Dg~-laSgs~----------DgtIrlWD~-tG~~l~tl~gH~~~V~sl--s~dG~-~LaSGs-~DGtIrlWD~~ 487 (1149)
.+++++|+. ++.+.. +++|.+.|. +++.+.++.... ....+ +.||+ +++++. .+++|.+||.+
T Consensus 271 ~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 271 QVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAISVAQDGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred eEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence 366788865 555432 357999999 788888886432 34444 56898 788877 58999999976
Q ss_pred -Cceeee
Q 001123 488 -GNLLGG 493 (1149)
Q Consensus 488 -G~~l~~ 493 (1149)
++.++.
T Consensus 350 t~~vv~~ 356 (373)
T 2mad_H 350 AGDQDQS 356 (373)
T ss_pred CCCEEee
Confidence 777766
No 244
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=98.39 E-value=1.9e-06 Score=91.63 Aligned_cols=113 Identities=13% Similarity=0.088 Sum_probs=62.7
Q ss_pred EEEEEEEEeCCCCCCc--hhhcccccCCCCCcceEEEEeeccccccchhhhhhhhhhccCCCCcchhhHHHHHhcccCCC
Q 001123 553 KILAGTWNVGQGRASQ--DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDG 630 (1149)
Q Consensus 553 ~i~v~TWNv~~~~~~~--~~l~~wl~~~~~~~Di~viGlQEi~~~~~~~~~~~~ke~~~~~~~~~~~~W~~~i~~~L~~~ 630 (1149)
.+.|.||||++..... +.+.+++.. .+||| |+|||+......+ . .+ .+ .+
T Consensus 7 ~lri~t~Nv~g~~~~~~~~~~~~~i~~--~~~DI--v~LQE~~~~~~~~-----------------~----~l--~~-~~ 58 (238)
T 1vyb_A 7 HITILTLNINGLNSAIKRHRLASWIKS--QDPSV--CCIQETHLTCRDT-----------------H----RL--KI-KG 58 (238)
T ss_dssp CEEEEEEECSCCCSHHHHHHHHHHHHH--HCCSE--EEEECCCCCTTSG-----------------G----GC--CC-TT
T ss_pred cceEEEEecccCCchhhHHHHHHHHHH--cCCCE--EEEecccCCCCCc-----------------h----hH--hh-CC
Confidence 5788999998765432 456777763 35675 7899996432110 0 00 11 23
Q ss_pred CcEEEEeeeccceeeeeeeeeccccCccceeEeeeEeecccccccCcceeEEEEEEeceEEEEeeecccccch
Q 001123 631 STFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE 703 (1149)
Q Consensus 631 ~~y~~v~s~qL~Gl~l~vfvr~~l~~~i~~v~~~~v~tG~~g~~gNKGaV~ir~~~~~t~lcFVn~HLaA~~~ 703 (1149)
+.|.......-.+--+++|.|+.+...+..+. .. ...-.+.+++.+.+..+.++|+|++....
T Consensus 59 y~~~~~~~~~~~~~Gvail~r~~~~~~~~~~~-----~~-----~~~r~i~~~~~~~~~~~~v~~~y~p~~~~ 121 (238)
T 1vyb_A 59 WRKIYQANGKQKKAGVAILVSDKTDFKPTKIK-----RD-----KEGHYIMVKGSIQQEELTILNIYAPNTGA 121 (238)
T ss_dssp CCEEEEECCSSSSCCEEEEECTTCCCEEEEEE-----EC-----TTSSEEEEEEEETTEEEEEEEEECCSSSH
T ss_pred CCeEEEccCCCCCceEEEEEeCCCCcccccee-----Ec-----CCCcEEEEEEEeCCCcEEEEEEecCCCCc
Confidence 44432221111112456777776432222211 11 11225667777888999999999998764
No 245
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.38 E-value=2e-05 Score=87.20 Aligned_cols=256 Identities=12% Similarity=0.102 Sum_probs=149.7
Q ss_pred eEEEEEee-CCeEEEeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCC
Q 001123 134 FLRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (1149)
Q Consensus 134 ~l~~l~~~-~~~l~ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~D 212 (1149)
...++... ++.+|.+.++ |..+|. ++..... .. .. .......++. +..|+.|+.+
T Consensus 61 ~~~~~~~~~~g~l~v~t~~-l~~~d~-~g~~~~~------------~~-------~~-~~~~~~~~~~--~~~l~v~t~~ 116 (330)
T 3hxj_A 61 IECRPSIGKDGTIYFGSDK-VYAINP-DGTEKWR------------FD-------TK-KAIVSDFTIF--EDILYVTSMD 116 (330)
T ss_dssp EEECCEETTTTEECCSSCE-EEEECC-CGGGGGG------------SC-------C------CCEEEE--TTEEEEECTT
T ss_pred cccceEEecCCcEEEecCc-EEEECC-CCcEEEE------------EE-------CC-CCcccCceEE--CCEEEEEecC
Confidence 34555554 7889998777 988985 5554432 00 00 0011112222 5678889999
Q ss_pred CeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeee
Q 001123 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVER 292 (1149)
Q Consensus 213 GtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~ 292 (1149)
+.|..+|.. +. .......+...+.++++.++|.|+.|+.++.|..+|.+ ++.........
T Consensus 117 ~~l~~~d~~-g~--------~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~---------- 176 (330)
T 3hxj_A 117 GHLYAINTD-GT--------EKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTND---------- 176 (330)
T ss_dssp SEEEEECTT-SC--------EEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSS----------
T ss_pred CEEEEEcCC-CC--------EEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCC----------
Confidence 999999987 43 24444555667788888888999999999999999987 44322211000
Q ss_pred ccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccc
Q 001123 293 SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (1149)
Q Consensus 293 ~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~ 372 (1149)
..+..++.+.+ ..+|.+. +.+..+| .+|+.+..+......+.++....
T Consensus 177 -------------------~~~~~~~~d~~-g~l~v~t-~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~---------- 224 (330)
T 3hxj_A 177 -------------------AITSAASIGKD-GTIYFGS-DKVYAIN-PDGTEKWNFYAGYWTVTRPAISE---------- 224 (330)
T ss_dssp -------------------CCCSCCEECTT-CCEEEES-SSEEEEC-TTSCEEEEECCSSCCCSCCEECT----------
T ss_pred -------------------CceeeeEEcCC-CEEEEEe-CEEEEEC-CCCcEEEEEccCCcceeceEECC----------
Confidence 11122233333 3466666 7889999 78877766543322111111111
Q ss_pred eeeEEecCCCCccceeeeeeccccceEeecC-CcEEEEeecc----cccCCCCceEEEEEcCCCcEEEEeCCCeEEEEeC
Q 001123 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA-DAVRRVAAKG----GFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP 447 (1149)
Q Consensus 373 ~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~-d~v~rv~~~g----~~~~~~~~V~ava~s~Dg~laSgs~DgtIrlWD~ 447 (1149)
++ .++.+.. +++.++...+ .+......+..++..++|.|+.++.+|.|..+|.
T Consensus 225 ---------------------~g-~l~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 225 ---------------------DG-TIYVTSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP 282 (330)
T ss_dssp ---------------------TS-CEEEEETTTEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT
T ss_pred ---------------------CC-eEEEEcCCCeEEEECCCCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC
Confidence 00 1112211 2222221111 0111111122344566889999999999999999
Q ss_pred CCCeeEeeecCCccEEEEEe-cCCEEEEeecCcEEEEEeCC
Q 001123 448 NGNRLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLE 487 (1149)
Q Consensus 448 tG~~l~tl~gH~~~V~sls~-dG~~LaSGs~DGtIrlWD~~ 487 (1149)
+|+.+..+......+.++.. .+..|+.|+.+|.+++...+
T Consensus 283 ~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 283 DGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNL 323 (330)
T ss_dssp TSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC-
T ss_pred CCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEecc
Confidence 88887776655556667766 45678889999999988754
No 246
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.33 E-value=1.2e-05 Score=93.58 Aligned_cols=154 Identities=13% Similarity=0.070 Sum_probs=109.7
Q ss_pred EEEeeCCeEEEeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCC-ceeeeecCCceEEEEEcCCCCEEEEEeCCCeE
Q 001123 137 TIVCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAP-FKESVKGVSSVMCMVGDEASGVVWSGHRDGRI 215 (1149)
Q Consensus 137 ~l~~~~~~l~ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~-~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtI 215 (1149)
+++...+.+++|+-.+++||++++...... ..+++ ..+ ....+ .. |..|+| |+.+|+.+ .++.|
T Consensus 44 ais~~~gll~a~~~~~l~v~~~~~l~~~~~-------~~~~~--~~~~~~~~l--p~-V~~l~f--d~~~L~v~-~~~~l 108 (388)
T 1xip_A 44 DISNSKSLFVAASGSKAVVGELQLLRDHIT-------SDSTP--LTFKWEKEI--PD-VIFVCF--HGDQVLVS-TRNAL 108 (388)
T ss_dssp EEETTTTEEEEEETTEEEEEEHHHHHHHHH-------SSSCC--CCCSEEEEC--TT-EEEEEE--ETTEEEEE-ESSEE
T ss_pred EEcCCCCEEEEeCCCEEEEEEhhHhhhhhc-------ccccc--ccceEEeeC--CC-eeEEEE--CCCEEEEE-cCCcE
Confidence 555557888888777899999875541100 00111 111 11122 34 999999 89999999 99999
Q ss_pred EEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcceeeecCCCcceeeEEEeeeccc
Q 001123 216 MCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (1149)
Q Consensus 216 RvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~ 295 (1149)
++||+.+-. .......|+.+|.++.+.+. .++.++.||+|.+||+.++....
T Consensus 109 ~v~dv~sl~--------~~~~~~~~~~~v~~i~~~~p-~~av~~~dG~L~v~dl~~~~~~~------------------- 160 (388)
T 1xip_A 109 YSLDLEELS--------EFRTVTSFEKPVFQLKNVNN-TLVILNSVNDLSALDLRTKSTKQ------------------- 160 (388)
T ss_dssp EEEESSSTT--------CEEEEEECSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEE-------------------
T ss_pred EEEEchhhh--------ccCccceeecceeeEEecCC-CEEEEECCCCEEEEEccCCcccc-------------------
Confidence 999997632 24456788889999888764 48999999999999997543210
Q ss_pred cccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccE--EEEE
Q 001123 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTREL--LKVF 348 (1149)
Q Consensus 296 ~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~--L~~l 348 (1149)
....+.++++++.| +++.+.++++++|+..++++ .+++
T Consensus 161 --------------~~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I 200 (388)
T 1xip_A 161 --------------LAQNVTSFDVTNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEF 200 (388)
T ss_dssp --------------EEESEEEEEECSSE-EEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred --------------ccCCceEEEEcCCc-eEEEEcCCcEEEEcCCCcccccccee
Confidence 01357888999988 77778899999999988886 6666
No 247
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=98.32 E-value=5.1e-06 Score=89.72 Aligned_cols=37 Identities=27% Similarity=0.472 Sum_probs=26.3
Q ss_pred EEEEEEEeCCCCCCchhhcccccCCCCCcceEEEEeecccc
Q 001123 554 ILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEM 594 (1149)
Q Consensus 554 i~v~TWNv~~~~~~~~~l~~wl~~~~~~~Di~viGlQEi~~ 594 (1149)
+.|.||||++.....+.+.+++.. .+||| |+|||+..
T Consensus 2 lrv~t~Nv~g~~~~~~~i~~~i~~--~~~Di--i~lQE~~~ 38 (257)
T 2voa_A 2 LKIATFNVNSIRSRLHIVIPWLKE--NKPDI--LCMQETKV 38 (257)
T ss_dssp EEEEEEECSCGGGTHHHHHHHHHH--HCCSE--EEEECCCC
T ss_pred eEEEEEecCChHHHHHHHHHHHhh--cCCCE--EEEEEeec
Confidence 568999999765544566667753 35675 78999965
No 248
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.31 E-value=3.9e-05 Score=95.70 Aligned_cols=134 Identities=14% Similarity=0.051 Sum_probs=74.6
Q ss_pred CCcccccccee---EEEEEeeCCeEEEe-CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCC--ceeeeecCCceEEE
Q 001123 124 HPLRETQIGCF---LRTIVCTEEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAP--FKESVKGVSSVMCM 197 (1149)
Q Consensus 124 ~pl~e~~~~~~---l~~l~~~~~~l~ag-~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~--~~~s~~G~~~V~~l 197 (1149)
.++|....+.. ..+....++.++.+ .++.|.-+|+++|+...... .. ......+ ...... . .+
T Consensus 56 ~~~W~~~~~~~~g~~~~P~v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~---~~---~~~~~~~~~~~~~~~-~----~~ 124 (677)
T 1kb0_A 56 GLAWSYNLESTRGVEATPVVVDGIMYVSASWSVVHAIDTRTGNRIWTYD---PQ---IDRSTGFKGCCDVVN-R----GV 124 (677)
T ss_dssp EEEEEEECCCCSCCCCCCEEETTEEEEECGGGCEEEEETTTTEEEEEEC---CC---CCGGGGGGSSSCSCC-C----CC
T ss_pred cEEEEEECCCCCCceeCCEEECCEEEEECCCCeEEEEECCCCcEEEEEc---CC---CCccccccccccCCC-C----Cc
Confidence 45666443321 12233457788765 47889999999888765410 00 0000000 000000 1 12
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecC-C----CCEEEEEEeCCCcEEEEEC------CCcEEE
Q 001123 198 VGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH-R----GPVLSLCISSYGDLWSGSE------GGGIKI 266 (1149)
Q Consensus 198 afs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH-~----~~VtsVafSpdG~L~SGS~------DgTIRV 266 (1149)
++ ++..|+.++.|+.+..+|..+|+ ++.++..+ . ..+++--.-.++.++.++. |+.|+.
T Consensus 125 a~--~~~~v~v~~~dg~l~alD~~tG~--------~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a 194 (677)
T 1kb0_A 125 AL--WKGKVYVGAWDGRLIALDAATGK--------EVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITA 194 (677)
T ss_dssp EE--ETTEEEEECTTSEEEEEETTTCC--------EEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEE
T ss_pred eE--ECCEEEEEcCCCEEEEEECCCCC--------EEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEE
Confidence 22 46788899999999999999876 35555443 1 1222211122566665543 799999
Q ss_pred EeCCCcceeeec
Q 001123 267 WPWEAIEKALSL 278 (1149)
Q Consensus 267 Wdl~t~~~~~~l 278 (1149)
+|.++++....+
T Consensus 195 ~D~~tG~~~W~~ 206 (677)
T 1kb0_A 195 YDAETGERKWRW 206 (677)
T ss_dssp EETTTCCEEEEE
T ss_pred EECCCCcEEEEe
Confidence 999998876544
No 249
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=98.31 E-value=3.8e-06 Score=90.73 Aligned_cols=119 Identities=15% Similarity=0.123 Sum_probs=65.9
Q ss_pred EEEEEEEEeCCCCCCchhhcccccCCCCCcceEEEEeeccccccchhhhhhhhhhccCCCCcchhhHHHHHhcccCCCCc
Q 001123 553 KILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGST 632 (1149)
Q Consensus 553 ~i~v~TWNv~~~~~~~~~l~~wl~~~~~~~Di~viGlQEi~~~~~~~~~~~~ke~~~~~~~~~~~~W~~~i~~~L~~~~~ 632 (1149)
.+.|.||||++.+...+.+..|+.. .+|| ||+|||+....... +.. . .+
T Consensus 19 ~lri~s~Nv~~~~~~~~~l~~~i~~--~~~D--Iv~lQE~~~~~~~~-----------------------~~~-~-~g-- 67 (245)
T 1wdu_A 19 PYRVLQANLQRKKLATAELAIEAAT--RKAA--IALIQEPYVGGAKS-----------------------MKG-F-RG-- 67 (245)
T ss_dssp CEEEEEEECTTCHHHHHHHHHHHHH--HTCS--EEEEESCCC-----------------------------CC-C-SS--
T ss_pred ceeeeeeeccccHHHHHHHHHHHhh--cCCC--EEEEEcccccCCcc-----------------------ccC-C-Cc--
Confidence 4789999999765544567778864 4567 57899986431100 000 1 11
Q ss_pred EEEEeee----ccceeeeeeeeec-cccCccceeEeeeEeecccccccCcceeEEEEEEeceEEEEeeecccccchhHHH
Q 001123 633 FERVGSR----QLAGLLIAVWVRK-NLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNR 707 (1149)
Q Consensus 633 y~~v~s~----qL~Gl~l~vfvr~-~l~~~i~~v~~~~v~tG~~g~~gNKGaV~ir~~~~~t~lcFVn~HLaA~~~~~~~ 707 (1149)
|..+... .-.|. .|+.++ .+ + +. .+. ..-..|++.+.+...+..+.|+|+|++.... .+.
T Consensus 68 y~~~~~~~~~~~~~Gv--aIl~~~~~~-~-~~---------~~~-~~~~~~~~~~~i~~~~~~~~v~~vy~p~~~~-~~~ 132 (245)
T 1wdu_A 68 VRVFQSTAQGDGTVKA--AIAVFDHDL-D-VI---------QYP-QLTTNNIVVVGIRTRAWEITLVSYYFEPDKP-IES 132 (245)
T ss_dssp CEEEECCCCTTCCCCE--EEEECCSSC-E-EE---------ECT-TTCCSSEEEEEEECSSCEEEEEEEECCTTSC-SHH
T ss_pred ceEeccccccCCCCCe--EEEEECCCc-c-eE---------Eec-ccccCCEEEEEEEcCCCcEEEEEEEeCCCCC-HHH
Confidence 2222111 11243 455543 22 1 10 011 1236788889998888899999999998753 233
Q ss_pred HHHHHHHHHH
Q 001123 708 RNADFDHVYR 717 (1149)
Q Consensus 708 Rn~d~~~I~~ 717 (1149)
+.+.+..+++
T Consensus 133 ~~~~l~~~~~ 142 (245)
T 1wdu_A 133 YLEQIKRVER 142 (245)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 250
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.31 E-value=3.4e-05 Score=85.64 Aligned_cols=186 Identities=11% Similarity=0.110 Sum_probs=113.2
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEee----cC-CCCEEEEEEeCCCcEEE-----EEC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ----AH-RGPVLSLCISSYGDLWS-----GSE 260 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~----GH-~~~VtsVafSpdG~L~S-----GS~ 260 (1149)
...+.+++++++|+++++.+.++.|.+|+.+ +. ...+. +. ...+++++++|+|.||- |..
T Consensus 85 ~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~---------~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~ 154 (305)
T 3dr2_A 85 TAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ---------AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLR 154 (305)
T ss_dssp CSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC---------EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGS
T ss_pred CCccceeeECCCCCEEEEECCCCEEEEECCC-CC---------EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcc
Confidence 4567899999999988877778899999986 33 22222 22 24578899999999764 432
Q ss_pred -------------CCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEE
Q 001123 261 -------------GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW 327 (1149)
Q Consensus 261 -------------DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~ 327 (1149)
.+.|..||.++++..... .+ .....+++++++..++
T Consensus 155 ~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-----------------~~--------------~~p~gl~~spdg~~ly 203 (305)
T 3dr2_A 155 KPSQGCPADPELAHHSVYRLPPDGSPLQRMA-----------------DL--------------DHPNGLAFSPDEQTLY 203 (305)
T ss_dssp CGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-----------------EE--------------SSEEEEEECTTSSEEE
T ss_pred ccccccccccccCCCeEEEEcCCCCcEEEEe-----------------cC--------------CCCcceEEcCCCCEEE
Confidence 234555555443211100 00 1223466777776555
Q ss_pred Eec-C------CceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEe
Q 001123 328 SAG-F------LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIM 400 (1149)
Q Consensus 328 Sas-d------~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~ 400 (1149)
.+. . ..|.+||+..+. +.... ++...
T Consensus 204 v~~~~~~~~~~~~i~~~~~~~~~-l~~~~--------------------------~~~~~-------------------- 236 (305)
T 3dr2_A 204 VSQTPEQGHGSVEITAFAWRDGA-LHDRR--------------------------HFASV-------------------- 236 (305)
T ss_dssp EEECCC---CCCEEEEEEEETTE-EEEEE--------------------------EEECC--------------------
T ss_pred EEecCCcCCCCCEEEEEEecCCC-ccCCe--------------------------EEEEC--------------------
Confidence 442 2 457777765443 11000 00000
Q ss_pred ecCCcEEEEeecccccCCCCceEEEEEcCCCcEEEEeCCCeEEEEeCCCCeeEeeecCCccEEEEEe--cCCEEEEeecC
Q 001123 401 GAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMN 478 (1149)
Q Consensus 401 G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~laSgs~DgtIrlWD~tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~D 478 (1149)
.......+++.++|.||.+..++ |.+||.+|+.+..+..+. .+.++++ +++.|+.++.+
T Consensus 237 -----------------~~~~pdgi~~d~~G~lwv~~~~g-v~~~~~~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~ 297 (305)
T 3dr2_A 237 -----------------PDGLPDGFCVDRGGWLWSSSGTG-VCVFDSDGQLLGHIPTPG-TASNCTFDQAQQRLFITGGP 297 (305)
T ss_dssp -----------------SSSCCCSEEECTTSCEEECCSSE-EEEECTTSCEEEEEECSS-CCCEEEECTTSCEEEEEETT
T ss_pred -----------------CCCCCCeEEECCCCCEEEecCCc-EEEECCCCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCC
Confidence 00011234577888988877655 999999999988887655 4666665 78899998887
Q ss_pred cEEEE
Q 001123 479 GIVQV 483 (1149)
Q Consensus 479 GtIrl 483 (1149)
+..++
T Consensus 298 ~l~~~ 302 (305)
T 3dr2_A 298 CLWML 302 (305)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 65554
No 251
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.29 E-value=0.00024 Score=82.99 Aligned_cols=106 Identities=9% Similarity=0.063 Sum_probs=71.1
Q ss_pred EEee-CCeEEEe--CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCC-
Q 001123 138 IVCT-EEQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG- 213 (1149)
Q Consensus 138 l~~~-~~~l~ag--~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DG- 213 (1149)
|+.+ ++.||.. .++.|++||.+++..... ..+..... ++++++++.|+.+..++
T Consensus 136 la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~---------------------~~~~~~~~-ia~~~~g~~l~~~d~~~~ 193 (409)
T 3hrp_A 136 IAAVGNNTVLAYQRDDPRVRLISVDDNKVTTV---------------------HPGFKGGK-PAVTKDKQRVYSIGWEGT 193 (409)
T ss_dssp EEECSTTEEEEEETTTTEEEEEETTTTEEEEE---------------------EETCCBCB-CEECTTSSEEEEEBSSTT
T ss_pred EEEeCCCCEEEEecCCCcEEEEECCCCEEEEe---------------------eccCCCCc-eeEecCCCcEEEEecCCC
Confidence 3443 5667764 357799999886553321 11111122 89999999999998877
Q ss_pred -eEEEEECCCCCCCCCCCccceEEe---ec-CCCCEEEEEEeC-CCcEEEEECCCcEEEEeCCCcc
Q 001123 214 -RIMCWKMNARLLDSDDGFGEVLSW---QA-HRGPVLSLCISS-YGDLWSGSEGGGIKIWPWEAIE 273 (1149)
Q Consensus 214 -tIRvWdl~~g~~~~~~~~~~~~~l---~G-H~~~VtsVafSp-dG~L~SGS~DgTIRVWdl~t~~ 273 (1149)
.|.+|+..++. . ...+ .. +...+.+++++| +|.|+.+..+++|+.||.+++.
T Consensus 194 ~~I~~~d~~~~~-------~-~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~ 251 (409)
T 3hrp_A 194 HTVYVYMKASGW-------A-PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE 251 (409)
T ss_dssp CEEEEEEGGGTT-------C-EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC
T ss_pred ceEEEEEcCCCc-------e-eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC
Confidence 78888876543 1 1222 12 456788999999 6778777778999999997654
No 252
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.28 E-value=4.2e-07 Score=104.83 Aligned_cols=94 Identities=15% Similarity=0.137 Sum_probs=52.8
Q ss_pred CCcEEEEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEecCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEEEEec
Q 001123 430 DGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVG 507 (1149)
Q Consensus 430 Dg~laSgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~sLa~D 507 (1149)
++.+++|+.|++|+.||. +|+++..+..+.. ...++++..|++|+.|+.|+.||.+ |+++..+..+. ....+.+
T Consensus 92 ~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~--~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~ 167 (369)
T 2hz6_A 92 DGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA--DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPE 167 (369)
T ss_dssp ---CCCCEEEEEEEEECCC------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCC
T ss_pred CCEEEEEeCCCEEEEEECCCCcEEEEecCCCc--ccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCcccc
Confidence 456777888999999999 7998877766532 2334588999999999999999975 88766554322 1222233
Q ss_pred C-----CeEEeecCCCceeeeeccC
Q 001123 508 A-----GYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 508 g-----~~LaSgS~DgtIRlWdl~s 527 (1149)
+ ..++.++.|+.|+.||..+
T Consensus 168 ~~~~~~~~v~~~~~dg~v~a~d~~t 192 (369)
T 2hz6_A 168 DDVDYKMSHFVSNGDGLVVTVDSES 192 (369)
T ss_dssp CCTTCCCCEEEEETSCEEEEECTTT
T ss_pred CCccccceEEEECCCCEEEEEECCC
Confidence 2 5677889999999999765
No 253
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.27 E-value=0.00017 Score=81.09 Aligned_cols=211 Identities=13% Similarity=0.125 Sum_probs=123.7
Q ss_pred CeE-EEe-CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001123 143 EQL-WAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (1149)
Q Consensus 143 ~~l-~ag-~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIRvWdl 220 (1149)
+.+ |++ .++.|.+||.+++.... +. . ...+.+++++++|+++++. .+ .|.+||.
T Consensus 61 ~~l~~~d~~~~~i~~~d~~~~~~~~------------------~~--~--~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~ 116 (326)
T 2ghs_A 61 GTAWWFNILERELHELHLASGRKTV------------------HA--L--PFMGSALAKISDSKQLIAS-DD-GLFLRDT 116 (326)
T ss_dssp TEEEEEEGGGTEEEEEETTTTEEEE------------------EE--C--SSCEEEEEEEETTEEEEEE-TT-EEEEEET
T ss_pred CEEEEEECCCCEEEEEECCCCcEEE------------------EE--C--CCcceEEEEeCCCeEEEEE-CC-CEEEEEC
Confidence 444 444 36779999987654211 10 1 2468899999999877764 44 4999998
Q ss_pred CCCCCCCCCCccceEEeec----C-CCCEEEEEEeCCCcEEEEECC-----CcEEEEeCCCcceeeecCCCcceeeEEEe
Q 001123 221 NARLLDSDDGFGEVLSWQA----H-RGPVLSLCISSYGDLWSGSEG-----GGIKIWPWEAIEKALSLKPEERHTAALIV 290 (1149)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~G----H-~~~VtsVafSpdG~L~SGS~D-----gTIRVWdl~t~~~~~~l~~~~~~~~a~~~ 290 (1149)
.++. ...+.. + ...+++++++|+|+||-++.+ +..+||.+.+++. ..+. .
T Consensus 117 ~~g~---------~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~-~~~~------~---- 176 (326)
T 2ghs_A 117 ATGV---------LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKV-TKLF------A---- 176 (326)
T ss_dssp TTCC---------EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEE-EEEE------E----
T ss_pred CCCc---------EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcE-EEee------C----
Confidence 8765 222221 1 246899999999997654432 3456665532211 1000 0
Q ss_pred eeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec--CCceEEEEcC--Cc-cEEEEEecCCceeeEEeeccCCC
Q 001123 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDAR--TR-ELLKVFNIDGQIENRVDMSLLPD 365 (1149)
Q Consensus 291 ~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas--d~tIrLWD~~--TG-~~L~~l~~~g~~~~~v~~S~~~~ 365 (1149)
. ......+++++++..++.+. .+.|.+||+. +| ++.. ..
T Consensus 177 ---------~----------~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~-----~~------------ 220 (326)
T 2ghs_A 177 ---------D----------ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK-----AE------------ 220 (326)
T ss_dssp ---------E----------ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC-----CE------------
T ss_pred ---------C----------CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccC-----ce------------
Confidence 0 01233566777776654432 3568888864 44 2100 00
Q ss_pred ccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCcEEEEe-CCCeEEE
Q 001123 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG-ANGLLLQ 444 (1149)
Q Consensus 366 ~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~laSgs-~DgtIrl 444 (1149)
++.. +.........+++.++|.+|.+. .++.|.+
T Consensus 221 ----------~~~~-----------------------------------~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~ 255 (326)
T 2ghs_A 221 ----------VFID-----------------------------------STGIKGGMDGSVCDAEGHIWNARWGEGAVDR 255 (326)
T ss_dssp ----------EEEE-----------------------------------CTTSSSEEEEEEECTTSCEEEEEETTTEEEE
T ss_pred ----------EEEE-----------------------------------CCCCCCCCCeeEECCCCCEEEEEeCCCEEEE
Confidence 0000 00011123356678888877655 4678999
Q ss_pred EeCCCCeeEeeecCCccEEEEEec---CCEEEEeecC
Q 001123 445 WDPNGNRLQDFQYLPFAVQCLCTF---GSQIWVGYMN 478 (1149)
Q Consensus 445 WD~tG~~l~tl~gH~~~V~sls~d---G~~LaSGs~D 478 (1149)
||.+|+.+..+..+...+.++++. ++.|+.++..
T Consensus 256 ~d~~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 256 YDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp ECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred ECCCCCEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 999999888888777778888764 5677666544
No 254
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.26 E-value=0.00048 Score=79.94 Aligned_cols=96 Identities=8% Similarity=-0.054 Sum_probs=66.7
Q ss_pred CCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeee-cCCceEEEEEcCCCCEEEEEe----------CCCeEEEE
Q 001123 150 ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK-GVSSVMCMVGDEASGVVWSGH----------RDGRIMCW 218 (1149)
Q Consensus 150 D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~-G~~~V~~lafs~dg~~LaSGS----------~DGtIRvW 218 (1149)
+++|.|.|.+++..... +. |..+ . ++++|||+.|+.++ .+++|.+|
T Consensus 58 ~~~V~ViD~~t~~v~~~---------------------I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGM---------------------IDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp SEEEEEEETTTTEEEEE---------------------EEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCEEEEEECCCCeEEEE---------------------EECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 56899999887765543 22 3445 3 99999999887765 47889999
Q ss_pred ECCCCCCCCCCCccceEEee-cC------CCCEEEEEEeCCCc-EEEEE--CCCcEEEEeCCCcceee
Q 001123 219 KMNARLLDSDDGFGEVLSWQ-AH------RGPVLSLCISSYGD-LWSGS--EGGGIKIWPWEAIEKAL 276 (1149)
Q Consensus 219 dl~~g~~~~~~~~~~~~~l~-GH------~~~VtsVafSpdG~-L~SGS--~DgTIRVWdl~t~~~~~ 276 (1149)
|..+.. ...++. +. ...-..++|+|||+ |+.+. .+++|-++|+++.+...
T Consensus 115 D~~t~~--------v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~ 174 (386)
T 3sjl_D 115 DPVTLL--------PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKR 174 (386)
T ss_dssp CTTTCC--------EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred ECCCCe--------EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEE
Confidence 998854 233332 11 11344689999998 66554 37899999998876443
No 255
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=98.26 E-value=1.3e-06 Score=98.68 Aligned_cols=39 Identities=26% Similarity=0.369 Sum_probs=25.6
Q ss_pred eEEEEEEEEeCCCCCCch-hhcccccCCCCCcceEEEEeecccc
Q 001123 552 LKILAGTWNVGQGRASQD-ALISWLGSAASDVGIVVVGLQEVEM 594 (1149)
Q Consensus 552 ~~i~v~TWNv~~~~~~~~-~l~~wl~~~~~~~Di~viGlQEi~~ 594 (1149)
-.+.|.||||++...... .+..||.. .+||| |+|||+..
T Consensus 60 ~~lrv~t~Nv~g~~~~~~~~i~~~i~~--~~~DI--i~LQE~~~ 99 (318)
T 1hd7_A 60 ATLKICSWNVDGLRAWIKKKGLDWVKE--EAPDI--LCLQETKC 99 (318)
T ss_dssp CCEEEEEEECSSHHHHHHTTHHHHHHH--HCCSE--EEEECCCC
T ss_pred CceEEEEEecCcchhhhhhhHHHHHHh--hCCCE--EEEEEccC
Confidence 368899999986432211 25666653 35675 78999965
No 256
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.22 E-value=0.0019 Score=81.49 Aligned_cols=315 Identities=16% Similarity=0.279 Sum_probs=177.8
Q ss_pred eEEEEEee-CCeEEEeCC-CCEEEEeCCCCCCCCccc--cccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEE
Q 001123 134 FLRTIVCT-EEQLWAGGE-NGLRVWNLKELYDESESD--SVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (1149)
Q Consensus 134 ~l~~l~~~-~~~l~ag~D-~tVrvWd~~~g~~~~~~~--~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSG 209 (1149)
.+++|..+ ++.+|.|.+ ++|.++|..+........ ...+ . .... ...+. ...|.++..+.+|. ||-|
T Consensus 259 ~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~--~-~~~~----~~~l~-~~~v~~i~~D~~g~-lWig 329 (781)
T 3v9f_A 259 YIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFI--R-EGDN----NYSLS-NASARYIFQDSFNN-IWIG 329 (781)
T ss_dssp CEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEE--C-BCSS----TTSBS-SSCEEEEEECSSCC-EEEE
T ss_pred eEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccc--c-CCCC----CCCCC-CCeEEEEEEeCCCC-EEEE
Confidence 46667665 788999876 889999987654221100 0000 0 0000 01122 56799999999874 8888
Q ss_pred eCCCeEEEEECCCCCCCCCCCccceEEee----------cCCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcceeeecC
Q 001123 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQ----------AHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLK 279 (1149)
Q Consensus 210 S~DGtIRvWdl~~g~~~~~~~~~~~~~l~----------GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~~~~~l~ 279 (1149)
..++-|..++..++.. ..+. -....|.+++..++|.||-|+.++-|.+|+..++... .+.
T Consensus 330 t~~~Gl~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~ 399 (781)
T 3v9f_A 330 TWGGGINFISNAPPTF---------HTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAI-YNK 399 (781)
T ss_dssp EBSSCEEEECSSCCSC---------EEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEE-CC-
T ss_pred ecCCeEEEeCCCCCcc---------eeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEE-Ecc
Confidence 9888888998876431 1111 0235799999999999999998777889998653211 000
Q ss_pred CCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecC-CceEEEEcCCccEEEEEecCCceeeEE
Q 001123 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRV 358 (1149)
Q Consensus 280 ~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd-~tIrLWD~~TG~~L~~l~~~g~~~~~v 358 (1149)
.. . ......+.+++.+.+ +.||.+.. +.+..+|..+++... +...+..
T Consensus 400 ~~-~------------------------~~~~~~v~~i~~d~~-g~lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~---- 448 (781)
T 3v9f_A 400 EN-R------------------------ELLSNSVLCSLKDSE-GNLWFGTYLGNISYYNTRLKKFQI-IELEKNE---- 448 (781)
T ss_dssp -----------------------------CCCSBEEEEEECTT-SCEEEEETTEEEEEECSSSCEEEE-CCSTTTC----
T ss_pred CC-C------------------------CCCCcceEEEEECCC-CCEEEEeccCCEEEEcCCCCcEEE-eccCCCC----
Confidence 00 0 012244666766654 45776664 678899988876432 2110000
Q ss_pred eeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCcEEEEeec-ccc---c------CCCCceEEEEEc
Q 001123 359 DMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK-GGF---G------DDNRRTEALTTS 428 (1149)
Q Consensus 359 ~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~-g~~---~------~~~~~V~ava~s 428 (1149)
. ..+.++...+ ...+..|...|+.++... +.+ . .....|.++...
T Consensus 449 ------~------------------~~v~~i~~d~-~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d 503 (781)
T 3v9f_A 449 ------L------------------LDVRVFYEDK-NKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQD 503 (781)
T ss_dssp ------C------------------CCEEEEEECT-TSEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEEC
T ss_pred ------C------------------CeEEEEEECC-CCCEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEc
Confidence 0 0000111111 112333444555544321 111 0 013568888889
Q ss_pred CCCcEEEEeCCCeEEEEeCCCCeeEeeec----CCccEEEEEec-CCEEEEeecCcEEEEEeCCCceeeeeeccC----C
Q 001123 429 IDGMIWTGGANGLLLQWDPNGNRLQDFQY----LPFAVQCLCTF-GSQIWVGYMNGIVQVLDLEGNLLGGWVAHS----S 499 (1149)
Q Consensus 429 ~Dg~laSgs~DgtIrlWD~tG~~l~tl~g----H~~~V~sls~d-G~~LaSGs~DGtIrlWD~~G~~l~~l~gH~----~ 499 (1149)
++|.||.|+.++-|..||..+..+..+.. ....|.++..| ...|+.|+..|.|..||..+.....+.... .
T Consensus 504 ~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~~~~~~gl~~~ 583 (781)
T 3v9f_A 504 SEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQVFQRKEGLPNT 583 (781)
T ss_dssp TTCCEEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEEECGGGTCSCC
T ss_pred CCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEEccccCCCCCc
Confidence 99999999985558889985544544432 23568899875 346777877887689997643333333222 3
Q ss_pred CeEEEEec--CCeEEeecCCCceeeeec
Q 001123 500 PVIKMAVG--AGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 500 ~V~sLa~D--g~~LaSgS~DgtIRlWdl 525 (1149)
.|.++..| |+ |+-++..| |..++.
T Consensus 584 ~i~~i~~d~~g~-lW~~t~~G-l~~~~~ 609 (781)
T 3v9f_A 584 HIRAISEDKNGN-IWASTNTG-ISCYIT 609 (781)
T ss_dssp CCCEEEECSSSC-EEEECSSC-EEEEET
T ss_pred eEEEEEECCCCC-EEEEcCCc-eEEEEC
Confidence 57777753 44 44444444 555553
No 257
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.18 E-value=0.0027 Score=79.93 Aligned_cols=323 Identities=15% Similarity=0.207 Sum_probs=180.7
Q ss_pred eeEEEEEee-CCe-EEEeCCC-CEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcC--CCCEEE
Q 001123 133 CFLRTIVCT-EEQ-LWAGGEN-GLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE--ASGVVW 207 (1149)
Q Consensus 133 ~~l~~l~~~-~~~-l~ag~D~-tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~--dg~~La 207 (1149)
..++.|..+ .+. ||.|.++ ++-.||.++.....-. ... .....+. ...|.++..+. +| .||
T Consensus 66 n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~-----------~~~-~~~~~l~-~~~i~~i~~d~~~~g-~lw 131 (781)
T 3v9f_A 66 NELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQ-----------YNP-EDPQSLI-TNDVTHITSSVQAGK-GLW 131 (781)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEEC-----------CCT-TCSSSCS-CSCEEEEEECSSTTS-EEE
T ss_pred cccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeec-----------ccc-CCCCCcc-cCcceEEEecCccCC-CEE
Confidence 356777777 467 9998766 8999998754321100 000 0000011 34688898887 65 466
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCccceEEeec------CCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcceeeecCCC
Q 001123 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA------HRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPE 281 (1149)
Q Consensus 208 SGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~G------H~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~~~~~l~~~ 281 (1149)
-|..++-|..++..++. ...+.. ....|.+++..++|.||-|..++-+..+|..+.+.. .+...
T Consensus 132 i~t~~~gl~~~~~~~~~---------~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~-~~~~~ 201 (781)
T 3v9f_A 132 VCTYYRGIEYLDIATGK---------FTHYNKSTVPALPSEQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVK-HFVHD 201 (781)
T ss_dssp EEESSSCEEEEETTTTE---------EEEESTTTCTTCSCCCEEEEEEEETTEEEEEETTTEEEEEETTTTEEE-EECC-
T ss_pred EEECCCCeeEEECCCCe---------EEeeccCcccCCCccceEEEEECCCCCEEEEecCCCeEEEcCCCCceE-eeecC
Confidence 67755557788876643 222211 135699999999999998888866888987664321 11000
Q ss_pred cceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEecCCceeeEEeec
Q 001123 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMS 361 (1149)
Q Consensus 282 ~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S 361 (1149)
.. .....+...+.++..+.++ .+|-+....+.+||..+++...........
T Consensus 202 ~~---------------------~~~~l~~~~i~~i~~d~~g-~lwigt~~Gl~~~d~~~~~~~~~~~~~~~~------- 252 (781)
T 3v9f_A 202 PQ---------------------NPNSLPGNDVRCIYKDTNG-NIWIGTSKGLALFNANTETFTNFHNNPGNI------- 252 (781)
T ss_dssp ----------------------------CCSSEEEEEECTTC-CEEEEETTEEEEEETTTTEEEC---------------
T ss_pred CC---------------------CcccCCCCceeEEEEcCCC-CEEEEeCCcHheECCCCCcEEEEEcCCCcc-------
Confidence 00 0000122456777776654 566665558999998877654322111000
Q ss_pred cCCCccccccceeeEEecCCCCccceeeeeeccccceEeecC-CcEEEEeecc-cc------------------cCCCCc
Q 001123 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA-DAVRRVAAKG-GF------------------GDDNRR 421 (1149)
Q Consensus 362 ~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~-d~v~rv~~~g-~~------------------~~~~~~ 421 (1149)
.... ...+.++.... ...+..|.. +|+.++.... .+ .-....
T Consensus 253 ---~~l~--------------~~~i~~i~~d~-~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~ 314 (781)
T 3v9f_A 253 ---HGAL--------------SSYIFSIKQLK-DNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNAS 314 (781)
T ss_dssp ------C--------------CCCEEEEEECT-TSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSC
T ss_pred ---cccc--------------CceEEEEEECC-CCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCe
Confidence 0000 00011111111 122334443 4554443211 00 012346
Q ss_pred eEEEEEcCCCcEEEEeCCCeEEEEeCCCCeeEeeec----------CCccEEEEEecC-CEEEEeecCcEEEEEeCCCce
Q 001123 422 TEALTTSIDGMIWTGGANGLLLQWDPNGNRLQDFQY----------LPFAVQCLCTFG-SQIWVGYMNGIVQVLDLEGNL 490 (1149)
Q Consensus 422 V~ava~s~Dg~laSgs~DgtIrlWD~tG~~l~tl~g----------H~~~V~sls~dG-~~LaSGs~DGtIrlWD~~G~~ 490 (1149)
|.++....+|.||.|+.++-|..++........+.. ....|.++..|. ..|+.|+.++-|..||..+..
T Consensus 315 v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~ 394 (781)
T 3v9f_A 315 ARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRV 394 (781)
T ss_dssp EEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEE
T ss_pred EEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCe
Confidence 888888889999999988889999984333333321 235689998874 678999977779999976432
Q ss_pred eeee----eccCCCeEEEEec-CCeEEeecCCCceeeeecc
Q 001123 491 LGGW----VAHSSPVIKMAVG-AGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 491 l~~l----~gH~~~V~sLa~D-g~~LaSgS~DgtIRlWdl~ 526 (1149)
...+ ......|.++..| ...|+-|..++.+..++..
T Consensus 395 ~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~ 435 (781)
T 3v9f_A 395 AIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTR 435 (781)
T ss_dssp EECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSS
T ss_pred EEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCC
Confidence 2222 1234678898864 3456667776778777753
No 258
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.15 E-value=0.00015 Score=90.57 Aligned_cols=81 Identities=26% Similarity=0.437 Sum_probs=57.2
Q ss_pred CCeEEEEeC-CCCeeEeeecCCccEE-EEEecCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCe---EEEEecCC-eE
Q 001123 439 NGLLLQWDP-NGNRLQDFQYLPFAVQ-CLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPV---IKMAVGAG-YI 511 (1149)
Q Consensus 439 DgtIrlWD~-tG~~l~tl~gH~~~V~-sls~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V---~sLa~Dg~-~L 511 (1149)
+|+|+.||+ +|+.+-.+..+..... .++..|..|+.|+.||+|++||.+ |+++..+..+.+.+ .....||+ |+
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEE
Confidence 588999999 8988777665542222 456688999999999999999975 99998887654322 22246776 66
Q ss_pred EeecCCCc
Q 001123 512 FTLANHGG 519 (1149)
Q Consensus 512 aSgS~Dgt 519 (1149)
+..+..|.
T Consensus 534 ~~~~G~gg 541 (689)
T 1yiq_A 534 TFMAGWGG 541 (689)
T ss_dssp EEEECCCT
T ss_pred EEEecCCc
Confidence 65554443
No 259
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.13 E-value=0.00055 Score=80.57 Aligned_cols=94 Identities=9% Similarity=-0.088 Sum_probs=66.2
Q ss_pred CCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeee-cCCceEEEEEcCCCCEEEEEe----------CCCeEEEEE
Q 001123 151 NGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK-GVSSVMCMVGDEASGVVWSGH----------RDGRIMCWK 219 (1149)
Q Consensus 151 ~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~-G~~~V~~lafs~dg~~LaSGS----------~DGtIRvWd 219 (1149)
++|-+.|.++.+.... +. |..+ .++++|||++|+.+. .++.|-++|
T Consensus 99 ~~VsVID~~t~~vv~~---------------------I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD 155 (426)
T 3c75_H 99 TQQFVIDGSTGRILGM---------------------TDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFD 155 (426)
T ss_dssp EEEEEEETTTTEEEEE---------------------EEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CeEEEEECCCCEEEEE---------------------EECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence 6899999988775543 11 2345 799999999888776 478999999
Q ss_pred CCCCCCCCCCCccceEEee-c------CCCCEEEEEEeCCCc-EEEEEC--CCcEEEEeCCCccee
Q 001123 220 MNARLLDSDDGFGEVLSWQ-A------HRGPVLSLCISSYGD-LWSGSE--GGGIKIWPWEAIEKA 275 (1149)
Q Consensus 220 l~~g~~~~~~~~~~~~~l~-G------H~~~VtsVafSpdG~-L~SGS~--DgTIRVWdl~t~~~~ 275 (1149)
..+.. .+.++. + +...-..++|+|||+ |+.+.. +++|-+.|+.+.+..
T Consensus 156 ~~t~~--------vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv 213 (426)
T 3c75_H 156 PVTFL--------PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFD 213 (426)
T ss_dssp TTTCC--------EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred CCCCc--------EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEE
Confidence 98754 233322 1 012335689999997 666653 689999999886543
No 260
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.10 E-value=7e-05 Score=93.40 Aligned_cols=105 Identities=15% Similarity=0.120 Sum_probs=70.3
Q ss_pred eEEEEEcCCCc-E-EEEeC---CCeEEEEeC-CCC-eeEeeecCCccEEE-EEecCCEEEEeec-C---cEEEEEeCC-C
Q 001123 422 TEALTTSIDGM-I-WTGGA---NGLLLQWDP-NGN-RLQDFQYLPFAVQC-LCTFGSQIWVGYM-N---GIVQVLDLE-G 488 (1149)
Q Consensus 422 V~ava~s~Dg~-l-aSgs~---DgtIrlWD~-tG~-~l~tl~gH~~~V~s-ls~dG~~LaSGs~-D---GtIrlWD~~-G 488 (1149)
...+.++|||+ | ++.+. +..|.+||+ +++ ..+.+..+...... ++.+|++|+.-+. + +.|.+||++ +
T Consensus 236 ~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~ 315 (693)
T 3iuj_A 236 YVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANP 315 (693)
T ss_dssp EEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred EEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 34566889987 4 33332 358999999 443 56777777666554 5677776664443 3 689999987 3
Q ss_pred ce--eeeeeccCCCeEEEEecCCeEEeecCCC---ceeeeecc
Q 001123 489 NL--LGGWVAHSSPVIKMAVGAGYIFTLANHG---GIRGWNVT 526 (1149)
Q Consensus 489 ~~--l~~l~gH~~~V~sLa~Dg~~LaSgS~Dg---tIRlWdl~ 526 (1149)
.. ...+..|...+.++++++++|+....++ .|++|++.
T Consensus 316 ~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 316 GPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp CGGGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred CccccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEECC
Confidence 33 3567778776667778888877665544 57888865
No 261
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.09 E-value=0.001 Score=74.28 Aligned_cols=103 Identities=11% Similarity=-0.030 Sum_probs=62.3
Q ss_pred EEEEEcCCCc-EEEE-eCCCeEEEEeCCCC---eeEeeecCCccEEEEEe--cCCEEEEeec----------CcEEEEEe
Q 001123 423 EALTTSIDGM-IWTG-GANGLLLQWDPNGN---RLQDFQYLPFAVQCLCT--FGSQIWVGYM----------NGIVQVLD 485 (1149)
Q Consensus 423 ~ava~s~Dg~-laSg-s~DgtIrlWD~tG~---~l~tl~gH~~~V~sls~--dG~~LaSGs~----------DGtIrlWD 485 (1149)
..+++++||. |+.+ +.++.|..+++.+. ....+..... ...++. +|...++... .+.|..+|
T Consensus 188 ~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d 266 (322)
T 2fp8_A 188 GGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFD 266 (322)
T ss_dssp CEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEEC
T ss_pred cceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEEC
Confidence 3467888876 6554 45688999998542 1222221122 455655 4664433333 47799999
Q ss_pred CCCceeeeeeccC----CCeEEEEe-cCCeEEeecCCCceeeeecc
Q 001123 486 LEGNLLGGWVAHS----SPVIKMAV-GAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 486 ~~G~~l~~l~gH~----~~V~sLa~-Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
.+|+.+..+.... ..+.+++. ++++.++....+.|..+++.
T Consensus 267 ~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 267 EFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp TTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC-
T ss_pred CCCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecc
Confidence 8898877776443 34566664 55555555567788888764
No 262
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=98.09 E-value=5e-06 Score=90.76 Aligned_cols=39 Identities=26% Similarity=0.463 Sum_probs=26.1
Q ss_pred EEEEEEEEeCCCCCCch-hhcccccCCCCCcceEEEEeeccccc
Q 001123 553 KILAGTWNVGQGRASQD-ALISWLGSAASDVGIVVVGLQEVEMG 595 (1149)
Q Consensus 553 ~i~v~TWNv~~~~~~~~-~l~~wl~~~~~~~Di~viGlQEi~~~ 595 (1149)
.+.+.||||++...... .+.+|+.. .+||| |+|||+...
T Consensus 3 ~l~i~s~Nv~g~~~~~~~~l~~~i~~--~~~DI--v~LQEt~~~ 42 (265)
T 3g91_A 3 VLKIISWNVNGLRAVHRKGFLKWFME--EKPDI--LCLQEIKAA 42 (265)
T ss_dssp EEEEEEEECSCHHHHHHHTHHHHHHH--HCCSE--EEEECCCSC
T ss_pred ccEEEEEEcCCchhhhhhhHHHHHHh--cCCCE--EEEEecccc
Confidence 46789999997544322 46777763 35665 678998653
No 263
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.08 E-value=0.00064 Score=79.97 Aligned_cols=269 Identities=8% Similarity=-0.002 Sum_probs=148.3
Q ss_pred CCCCEEEEEeC-C----CeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEE----------CCCcE
Q 001123 201 EASGVVWSGHR-D----GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS----------EGGGI 264 (1149)
Q Consensus 201 ~dg~~LaSGS~-D----GtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS----------~DgTI 264 (1149)
++++.++.... + ++|-+.|+.+.+ .+.++.--..+ .|++||||+ |+.+. .+++|
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~--------vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~V 151 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGR--------ILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYV 151 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTE--------EEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCE--------EEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEE
Confidence 56665555544 2 699999998854 34444433456 799999997 65443 47899
Q ss_pred EEEeCCCcceeeecCCC-cceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec---CCceEEEEcC
Q 001123 265 KIWPWEAIEKALSLKPE-ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALWDAR 340 (1149)
Q Consensus 265 RVWdl~t~~~~~~l~~~-~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas---d~tIrLWD~~ 340 (1149)
.++|+.+.+....+... ..... . ...-..+++++++.+++.+. .++|.+.|+.
T Consensus 152 sviD~~t~~vv~~I~v~g~~r~~-------------~----------g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~ 208 (426)
T 3c75_H 152 EVFDPVTFLPIADIELPDAPRFL-------------V----------GTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLE 208 (426)
T ss_dssp EEECTTTCCEEEEEEETTCCCCC-------------B----------SCCGGGSEECTTSSEEEEEECSSSCEEEEEETT
T ss_pred EEEECCCCcEEEEEECCCccccc-------------c----------CCCcceEEEcCCCCEEEEEecCCCCeEEEEECC
Confidence 99999886543322100 00000 0 00111245677777777653 3679999999
Q ss_pred CccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCCc-EEEEeecccccCCC
Q 001123 341 TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAKGGFGDDN 419 (1149)
Q Consensus 341 TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d~-v~rv~~~g~~~~~~ 419 (1149)
+++.++++...+.. ...+.+. ...+.+.++++.++.....+ +..... ..+.-..
T Consensus 209 t~kvv~~I~v~g~~----~~~p~g~--------------------~~~v~~~~dG~~~~V~~~~~~v~~~~~-~~~~v~~ 263 (426)
T 3c75_H 209 GKTFDRMLDVPDCY----HIFPASP--------------------TVFYMNCRDGSLARVDFADGETKVTNT-EVFHTED 263 (426)
T ss_dssp TTEEEEEEECCSEE----EEEEEET--------------------TEEEEEETTSSEEEEECCTTCCEEEEC-CCCSCTT
T ss_pred CCeEEEEEEcCCce----eeccCCC--------------------cEEEEEcCCCCEEEEECCCCcEEEEee-eeeccCC
Confidence 99998887653321 0000000 00112222232222222111 110000 0111111
Q ss_pred Cce-EEEEEcCCCc-EEEEeCCCeEEEEeCCCCee---Eeee------------cCCccEEEEEecCCEEEEeec-----
Q 001123 420 RRT-EALTTSIDGM-IWTGGANGLLLQWDPNGNRL---QDFQ------------YLPFAVQCLCTFGSQIWVGYM----- 477 (1149)
Q Consensus 420 ~~V-~ava~s~Dg~-laSgs~DgtIrlWD~tG~~l---~tl~------------gH~~~V~sls~dG~~LaSGs~----- 477 (1149)
..+ ..+.+++++. ++..+..++|.+.|..+..+ .++. .+......++.+|++|++...
T Consensus 264 ~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~g 343 (426)
T 3c75_H 264 ELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEW 343 (426)
T ss_dssp SCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTT
T ss_pred CceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccc
Confidence 111 1234567654 66666778999999844221 1111 111112366778998887753
Q ss_pred -----CcEEEEEeCC-CceeeeeeccCCCeEEEE--ecCC-eEEeec-CCCceeeeeccCC
Q 001123 478 -----NGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAG-YIFTLA-NHGGIRGWNVTSP 528 (1149)
Q Consensus 478 -----DGtIrlWD~~-G~~l~~l~gH~~~V~sLa--~Dg~-~LaSgS-~DgtIRlWdl~sp 528 (1149)
+++|.+.|.. ++.++.+..-. ..++|+ +||+ +++++. .+++|-++|+.+.
T Consensus 344 thk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 344 KHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG 403 (426)
T ss_dssp CTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred cccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence 4689999976 77777765322 244554 6898 888877 5999999998653
No 264
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.05 E-value=0.00011 Score=85.07 Aligned_cols=90 Identities=8% Similarity=-0.187 Sum_probs=64.4
Q ss_pred CEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEe----------CCCeEEEEECC
Q 001123 152 GLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH----------RDGRIMCWKMN 221 (1149)
Q Consensus 152 tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS----------~DGtIRvWdl~ 221 (1149)
+|-|.|.++++...+ + .+ |..+ .++++|||+.|+.+. .+++|.+||+.
T Consensus 47 ~vsvID~~t~~v~~~-----------------i--~v-G~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~ 104 (368)
T 1mda_H 47 ENWVSCAGCGVTLGH-----------------S--LG-AFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV 104 (368)
T ss_dssp EEEEEETTTTEEEEE-----------------E--EE-CTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT
T ss_pred eEEEEECCCCeEEEE-----------------E--eC-CCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 788999988776543 1 11 3445 699999999999886 47899999999
Q ss_pred CCCCCCCCCccceEEeecCC-------CCEEEEEEeCCCc-EEEEEC--CCcEEE--EeCCC
Q 001123 222 ARLLDSDDGFGEVLSWQAHR-------GPVLSLCISSYGD-LWSGSE--GGGIKI--WPWEA 271 (1149)
Q Consensus 222 ~g~~~~~~~~~~~~~l~GH~-------~~VtsVafSpdG~-L~SGS~--DgTIRV--Wdl~t 271 (1149)
+++ .+.++.-+. ..-..++|||||+ |+.+.. +.+|.+ ||+.+
T Consensus 105 T~~--------vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 105 TFL--------PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp TCC--------EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred CCC--------EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 865 345543220 2245789999997 766653 467888 99866
No 265
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.92 E-value=0.00082 Score=83.74 Aligned_cols=73 Identities=21% Similarity=0.241 Sum_probs=50.6
Q ss_pred CCeEEEEeC-CCCeeEeeecCCccEE--EEEecCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCe---EEEEecCCeE
Q 001123 439 NGLLLQWDP-NGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPV---IKMAVGAGYI 511 (1149)
Q Consensus 439 DgtIrlWD~-tG~~l~tl~gH~~~V~--sls~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V---~sLa~Dg~~L 511 (1149)
.|+|..||+ +|+.+-.+..+ .++. .++.+|..++.|+.||.+++||.+ |+++..+.-..+.+ .....+|+..
T Consensus 456 ~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~ 534 (677)
T 1kb0_A 456 FGRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY 534 (677)
T ss_dssp EEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred ccEEEEEeCCCCcEEeecCCC-CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEE
Confidence 378999999 89877665533 2222 356688999999999999999975 99988877443211 1123677643
Q ss_pred E
Q 001123 512 F 512 (1149)
Q Consensus 512 a 512 (1149)
+
T Consensus 535 v 535 (677)
T 1kb0_A 535 V 535 (677)
T ss_dssp E
T ss_pred E
Confidence 3
No 266
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.86 E-value=0.00058 Score=77.19 Aligned_cols=64 Identities=8% Similarity=-0.029 Sum_probs=39.9
Q ss_pred EEEEE--ecCCEEEEeecCc-EEEEEeCC----Cc-----eee--eeeccCCCeEEEE--ecCCeEEeecCCCceeeeec
Q 001123 462 VQCLC--TFGSQIWVGYMNG-IVQVLDLE----GN-----LLG--GWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 462 V~sls--~dG~~LaSGs~DG-tIrlWD~~----G~-----~l~--~l~gH~~~V~sLa--~Dg~~LaSgS~DgtIRlWdl 525 (1149)
++.|+ ++|++|+++..++ .|..+|.. +. ... ...++.+....++ .+|++.++...++.|.+||.
T Consensus 197 ~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 197 VNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp EEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred cceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence 44454 4688898887766 55555421 11 111 1224555555555 57888888888999999995
No 267
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.80 E-value=0.0011 Score=76.39 Aligned_cols=259 Identities=8% Similarity=-0.092 Sum_probs=134.8
Q ss_pred CEEEEEeCCC----eEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEE----------CCCcEEEEe
Q 001123 204 GVVWSGHRDG----RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS----------EGGGIKIWP 268 (1149)
Q Consensus 204 ~~LaSGS~DG----tIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS----------~DgTIRVWd 268 (1149)
+..++-..++ +|-+.|..+++ .+.++..-..+ .++|||||+ |+.+. .|++|.+||
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~--------v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD 102 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGV--------TLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFD 102 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTE--------EEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEEC
T ss_pred eEEEECCccCCccceEEEEECCCCe--------EEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 3444444454 78899998864 35555433456 799999997 66554 478999999
Q ss_pred CCCcceeeecCCC-cceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec---CCceEE--EEcCCc
Q 001123 269 WEAIEKALSLKPE-ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFAL--WDARTR 342 (1149)
Q Consensus 269 l~t~~~~~~l~~~-~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas---d~tIrL--WD~~TG 342 (1149)
+.+++....+... ..... ...+-..+++++++.+++.+. ...+.+ +|+.+
T Consensus 103 ~~T~~vv~~I~v~~~~~~~-----------------------~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t- 158 (368)
T 1mda_H 103 PVTFLPIADIELPDAPRFS-----------------------VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD- 158 (368)
T ss_dssp TTTCCEEEEEEETTSCSCC-----------------------BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-
T ss_pred CCCCCEEEEEECCCccccc-----------------------cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-
Confidence 9987654332110 00000 001122456778888777653 356888 99987
Q ss_pred cEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccceEeecCC-----cEEEEeecccccC
Q 001123 343 ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-----AVRRVAAKGGFGD 417 (1149)
Q Consensus 343 ~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~d-----~v~rv~~~g~~~~ 417 (1149)
++++...+.. .+.+.+... + +.+.++++.++..... +...+.....+.-
T Consensus 159 --v~~i~v~~~~----~~~p~g~~~---------~-----------~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~v 212 (368)
T 1mda_H 159 --DQLTKSASCF----HIHPGAAAT---------H-----------YLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNC 212 (368)
T ss_dssp --EEEEECSSCC----CCEEEETTE---------E-----------ECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCB
T ss_pred --ceEEECCCce----EEccCCCeE---------E-----------EEEcCCCCEEEEECccccccCCeEEEEeeeeeeC
Confidence 4444322111 000000000 0 0111111111111110 1000000000100
Q ss_pred CCCceEEEEEcCCCcEEEEeCCCeEEEEeCCC---CeeEeee------------cCCccEEEEEecCCEEEEeec-----
Q 001123 418 DNRRTEALTTSIDGMIWTGGANGLLLQWDPNG---NRLQDFQ------------YLPFAVQCLCTFGSQIWVGYM----- 477 (1149)
Q Consensus 418 ~~~~V~ava~s~Dg~laSgs~DgtIrlWD~tG---~~l~tl~------------gH~~~V~sls~dG~~LaSGs~----- 477 (1149)
..... +..+++.++..+. ++|.+-|..+ +.+..+. .+......++.||++++++..
T Consensus 213 g~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~ 288 (368)
T 1mda_H 213 SSQAA---QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRS 288 (368)
T ss_dssp CSCCE---EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSC
T ss_pred CCCcc---ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCc
Confidence 11111 2444555665556 8898889843 2223221 111222467789999987643
Q ss_pred ----CcEEEEEeCC-CceeeeeeccCCCeEEEE--ecCCe-EEeec-CCCceeeeeccC
Q 001123 478 ----NGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGY-IFTLA-NHGGIRGWNVTS 527 (1149)
Q Consensus 478 ----DGtIrlWD~~-G~~l~~l~gH~~~V~sLa--~Dg~~-LaSgS-~DgtIRlWdl~s 527 (1149)
++.+.++|+. ++.++.+.... ....|+ +||++ +++.. .+++|.++|+.+
T Consensus 289 ~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 289 CLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp TTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred ccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence 2356699976 77777776443 355565 68875 55556 599999999875
No 268
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.60 E-value=0.0028 Score=78.83 Aligned_cols=54 Identities=7% Similarity=0.036 Sum_probs=39.5
Q ss_pred cCcEEEEEeCC-CceeeeeeccCCCe-EEEEecCCeEEeecCCCceeeeeccCCCC
Q 001123 477 MNGIVQVLDLE-GNLLGGWVAHSSPV-IKMAVGAGYIFTLANHGGIRGWNVTSPGP 530 (1149)
Q Consensus 477 ~DGtIrlWD~~-G~~l~~l~gH~~~V-~sLa~Dg~~LaSgS~DgtIRlWdl~sp~p 530 (1149)
.+|.|..||.. |+.+-....+.... ..++..+.+++.++.|+.++.||..+...
T Consensus 436 ~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 436 VSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA 491 (668)
T ss_dssp CEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence 45999999965 88766555443322 23556888999999999999999876433
No 269
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=97.49 E-value=0.00039 Score=75.34 Aligned_cols=37 Identities=24% Similarity=0.243 Sum_probs=27.8
Q ss_pred EEEEEEEEeCCCCCCchhhcccccCCCCCcceEEEEeeccc
Q 001123 553 KILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVE 593 (1149)
Q Consensus 553 ~i~v~TWNv~~~~~~~~~l~~wl~~~~~~~Di~viGlQEi~ 593 (1149)
.+.+.|||||+.+...+.|.+|+.. .+||| |+|||..
T Consensus 7 ~mki~s~Nvn~~r~~~~~l~~~l~~--~~~DI--l~LQEt~ 43 (240)
T 2ei9_A 7 RLRIGQINLGGAEDATRELPSIARD--LGLDI--VLVQEQY 43 (240)
T ss_dssp EEEEEEEECTTCHHHHHTHHHHHHH--HTCSE--EEEESCC
T ss_pred cceEEEEecCccHHHHHHHHHHHHH--cCCCE--EEeecce
Confidence 3779999999877655668889874 45676 5789973
No 270
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.46 E-value=0.11 Score=55.73 Aligned_cols=70 Identities=13% Similarity=0.225 Sum_probs=49.5
Q ss_pred ceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCCCCCCCccceEEe-ecCCCCEEEEEEeCCC-cE-EEEECCCcEEEEe
Q 001123 193 SVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYG-DL-WSGSEGGGIKIWP 268 (1149)
Q Consensus 193 ~V~~lafs~dg-~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l-~GH~~~VtsVafSpdG-~L-~SGS~DgTIRVWd 268 (1149)
.+.++++++++ .+.++-..++.|.+++++++. ...+ ........+|++++++ .| ++-...+.|.+++
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~---------~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~ 107 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE---------PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAK 107 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCC---------CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCC---------cEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEE
Confidence 46789999865 566676678999999997643 2222 2223467899999975 55 4666678999998
Q ss_pred CCC
Q 001123 269 WEA 271 (1149)
Q Consensus 269 l~t 271 (1149)
++.
T Consensus 108 ~~g 110 (267)
T 1npe_A 108 MDG 110 (267)
T ss_dssp TTS
T ss_pred cCC
Confidence 864
No 271
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.36 E-value=0.03 Score=69.50 Aligned_cols=77 Identities=25% Similarity=0.445 Sum_probs=53.3
Q ss_pred CCCeEEEEeC-CCCeeEeeecCCccE-EEEEecCCEEEEeecCcEEEEEeCC-CceeeeeeccCC----CeEEEEecCC-
Q 001123 438 ANGLLLQWDP-NGNRLQDFQYLPFAV-QCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSS----PVIKMAVGAG- 509 (1149)
Q Consensus 438 ~DgtIrlWD~-tG~~l~tl~gH~~~V-~sls~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~----~V~sLa~Dg~- 509 (1149)
.+|.|.-||+ +|+.+-....+.... ..++..|..|+.|+.||.|++||.+ |+.+..+....+ ++. ...+|+
T Consensus 436 ~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~-~~~~G~~ 514 (668)
T 1kv9_A 436 VSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMT-FELAGRQ 514 (668)
T ss_dssp CEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE-EEETTEE
T ss_pred ccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceE-EEECCEE
Confidence 4689999999 898765554432221 2456689999999999999999975 998887765532 222 235776
Q ss_pred eEEeec
Q 001123 510 YIFTLA 515 (1149)
Q Consensus 510 ~LaSgS 515 (1149)
|++.++
T Consensus 515 yva~~~ 520 (668)
T 1kv9_A 515 YVAIMA 520 (668)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 555443
No 272
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.28 E-value=0.21 Score=53.60 Aligned_cols=104 Identities=9% Similarity=-0.050 Sum_probs=63.1
Q ss_pred EEEEEcC-CCcEEEEeC---CCeEEEEeCCCCeeEeee-cCCccEEEEEe--cCCEEEEee-cCcEEEEEeCCCceeeee
Q 001123 423 EALTTSI-DGMIWTGGA---NGLLLQWDPNGNRLQDFQ-YLPFAVQCLCT--FGSQIWVGY-MNGIVQVLDLEGNLLGGW 494 (1149)
Q Consensus 423 ~ava~s~-Dg~laSgs~---DgtIrlWD~tG~~l~tl~-gH~~~V~sls~--dG~~LaSGs-~DGtIrlWD~~G~~l~~l 494 (1149)
..+++++ ++.|+.+.. .+.|..++.+|...+.+. ..-...+.+++ ++++|+.+. ..+.|+++|.+|.....+
T Consensus 125 ~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 204 (267)
T 1npe_A 125 RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV 204 (267)
T ss_dssp EEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE
T ss_pred cEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEE
Confidence 4566777 466655443 368888888776555443 22234556655 477776665 457999999886433333
Q ss_pred eccCCCeEEEEecCCeEEeec-CCCceeeeecc
Q 001123 495 VAHSSPVIKMAVGAGYIFTLA-NHGGIRGWNVT 526 (1149)
Q Consensus 495 ~gH~~~V~sLa~Dg~~LaSgS-~DgtIRlWdl~ 526 (1149)
......-..|++|+..|+-+. ..+.|...|..
T Consensus 205 ~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 205 LEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp EECCCSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred ecCCCCceEEEEeCCEEEEEECCCCeEEEEeCC
Confidence 222233467777777666554 45778777754
No 273
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.25 E-value=0.041 Score=67.51 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=37.2
Q ss_pred cCcEEEEEeCC-CceeeeeeccCCCeE-E-EEecCCeEEeecCCCceeeeeccCCCC
Q 001123 477 MNGIVQVLDLE-GNLLGGWVAHSSPVI-K-MAVGAGYIFTLANHGGIRGWNVTSPGP 530 (1149)
Q Consensus 477 ~DGtIrlWD~~-G~~l~~l~gH~~~V~-s-La~Dg~~LaSgS~DgtIRlWdl~sp~p 530 (1149)
.+|.|..||+. |+.+-...- ..++. . ++..+..++.++.|+.++.+|..+...
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~ 506 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDL 506 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred CcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCE
Confidence 45899999975 887654431 12222 2 456788888899999999999877543
No 274
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=97.17 E-value=0.0011 Score=77.38 Aligned_cols=31 Identities=10% Similarity=0.067 Sum_probs=25.6
Q ss_pred eEEEEeeecccccchhHHHHHHHHHHHHHhc
Q 001123 689 RIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (1149)
Q Consensus 689 t~lcFVn~HLaA~~~~~~~Rn~d~~~I~~~l 719 (1149)
..||++|.||..+-+.-..|..+...|++.+
T Consensus 195 ~~l~V~nTHL~~~p~~~~vRl~Q~~~Ll~~l 225 (398)
T 3ngq_A 195 QLLIVANAHMHWDPEYSDVKLIQTMMFVSEV 225 (398)
T ss_dssp CEEEEEEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred cEEEEEEeCcCCCCCCHHHHHHHHHHHHHHH
Confidence 4699999999998766677888888888765
No 275
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.11 E-value=7.9e-05 Score=93.67 Aligned_cols=32 Identities=6% Similarity=-0.001 Sum_probs=0.0
Q ss_pred eceEEEEeeecccccchhHHHHHHHHHHHHHh
Q 001123 687 YDRIMCFVNCHFAAHLEAVNRRNADFDHVYRT 718 (1149)
Q Consensus 687 ~~t~lcFVn~HLaA~~~~~~~Rn~d~~~I~~~ 718 (1149)
.+..|+++|+||.++...-..|......|++.
T Consensus 545 ~g~~l~V~ntHL~~~p~~~~~R~~Qa~~l~~~ 576 (727)
T 4b8c_D 545 SGDTIWAVTTHLHWDPKFNDVKTFQVGVLLDH 576 (727)
T ss_dssp --------------------------------
T ss_pred CCceEEEEEeccccCCCCCchHHHHHHHHHHH
Confidence 36789999999998654334455555444444
No 276
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.04 E-value=0.12 Score=56.90 Aligned_cols=186 Identities=13% Similarity=0.105 Sum_probs=113.6
Q ss_pred CEEEEEEeCCCcEEE-EEC--CCcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEE
Q 001123 243 PVLSLCISSYGDLWS-GSE--GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS 319 (1149)
Q Consensus 243 ~VtsVafSpdG~L~S-GS~--DgTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las 319 (1149)
....|+|++||.|+- .+. +++|++.|+++++....+..... .....++.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~----------------------------~fgeGi~~ 73 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS----------------------------YFGEGLTL 73 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT----------------------------CCEEEEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC----------------------------cceEEEEE
Confidence 467999999988764 333 68999999998764432211000 01111222
Q ss_pred cCCCCEEEEec--CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeeccccc
Q 001123 320 DHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRN 397 (1149)
Q Consensus 320 ~~~~~~v~Sas--d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~ 397 (1149)
. +.++|-+. ++.+.++|..|++.+.++... ..
T Consensus 74 ~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~------------------------------------------- 107 (266)
T 2iwa_A 74 L--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MK------------------------------------------- 107 (266)
T ss_dssp E--TTEEEEEETTCSEEEEEETTTTEEEEEEECC-SS-------------------------------------------
T ss_pred e--CCEEEEEEecCCEEEEEECCCCcEEEEEECC-CC-------------------------------------------
Confidence 2 34566554 567999999999888876421 00
Q ss_pred eEeecCCcEEEEeecccccCCCCceEEEEEcCCC-cEEEEeCCCeEEEEeC-CCCeeEeeecC--Cc---cEEEEEecCC
Q 001123 398 AIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDP-NGNRLQDFQYL--PF---AVQCLCTFGS 470 (1149)
Q Consensus 398 ~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg-~laSgs~DgtIrlWD~-tG~~l~tl~gH--~~---~V~sls~dG~ 470 (1149)
.+ ..+++|| .++.+..+++|.+.|. +.+.++++.-. .. .++.+.+.+.
T Consensus 108 ------~g-------------------~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg 162 (266)
T 2iwa_A 108 ------DG-------------------WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYING 162 (266)
T ss_dssp ------SC-------------------CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETT
T ss_pred ------Ce-------------------EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECC
Confidence 00 0022333 4665566789999999 66777776532 12 3556654334
Q ss_pred EEEEee-cCcEEEEEeCC-Cceeeeeecc-----------C--CCeEEEEe--cCC-eEEeecCCCceeeeeccC
Q 001123 471 QIWVGY-MNGIVQVLDLE-GNLLGGWVAH-----------S--SPVIKMAV--GAG-YIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 471 ~LaSGs-~DGtIrlWD~~-G~~l~~l~gH-----------~--~~V~sLa~--Dg~-~LaSgS~DgtIRlWdl~s 527 (1149)
+|++.. .++.|.+.|.+ |+.+..+.-. . ...+.|+. +++ .++|+...+++..=++..
T Consensus 163 ~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 163 EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 666665 57899999975 8887766531 1 24467774 555 555777778887777653
No 277
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.03 E-value=0.066 Score=65.18 Aligned_cols=120 Identities=8% Similarity=0.040 Sum_probs=65.3
Q ss_pred eeCCeEEEe-C-CCCEEEEeC-CCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEE
Q 001123 140 CTEEQLWAG-G-ENGLRVWNL-KELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIM 216 (1149)
Q Consensus 140 ~~~~~l~ag-~-D~tVrvWd~-~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIR 216 (1149)
..++.+|.+ . ++.|.-.|. ++|+..... -.....+ ........... .++ ++ ++..|+.++.|+.+.
T Consensus 60 v~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~---~~~~~~~-~~~~~~~~~~~-~~~----~~--~~~~v~v~~~dg~l~ 128 (571)
T 2ad6_A 60 VIGDMMYVHSAFPNNTYALNLNDPGKIVWQH---KPKQDAS-TKAVMCCDVVD-RGL----AY--GAGQIVKKQANGHLL 128 (571)
T ss_dssp EETTEEEEECSTTTCEEEEETTCTTSEEEEE---CCCCCGG-GGGGCTTCSCC-CCC----EE--ETTEEEEECTTSEEE
T ss_pred EECCEEEEEeCCCCEEEEEeCCCCccEEEEE---cCCCCcc-ccccccccccc-ccc----EE--ECCEEEEEeCCCEEE
Confidence 347778764 4 577999998 888866530 0000000 00000000000 111 22 356788889999999
Q ss_pred EEECCCCCCCCCCCccceEEee--cCCC--CEEEEEEeCCCcEEEEEC------CCcEEEEeCCCcceeeec
Q 001123 217 CWKMNARLLDSDDGFGEVLSWQ--AHRG--PVLSLCISSYGDLWSGSE------GGGIKIWPWEAIEKALSL 278 (1149)
Q Consensus 217 vWdl~~g~~~~~~~~~~~~~l~--GH~~--~VtsVafSpdG~L~SGS~------DgTIRVWdl~t~~~~~~l 278 (1149)
.+|..+|+ .+.+.. +|.. .+.+--.-.++.++.++. |+.|..+|.++++....+
T Consensus 129 alD~~tG~--------~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 129 ALDAKTGK--------INWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp EEETTTCC--------EEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred EEECCCCC--------EEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 99998876 233322 2211 122111112567666554 899999999998876544
No 278
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=97.02 E-value=0.0004 Score=75.63 Aligned_cols=26 Identities=12% Similarity=0.050 Sum_probs=20.5
Q ss_pred cceeEEEEEEe---ceEEEEeeecccccc
Q 001123 677 KGAVGLRVRVY---DRIMCFVNCHFAAHL 702 (1149)
Q Consensus 677 KGaV~ir~~~~---~t~lcFVn~HLaA~~ 702 (1149)
.....+.|... +..|.+||+||.+..
T Consensus 111 R~p~~~~~~~~~~~g~~~~vi~~Hl~~~~ 139 (260)
T 2a40_B 111 REPAVVKFSSHSTKVKEFAIVALHSAPSD 139 (260)
T ss_dssp SCCEEEEEECTTSSSSEEEEEECCCCGGG
T ss_pred eCCEEEEEEeCCCCCceEEEEEecCCCCC
Confidence 66677778765 569999999999764
No 279
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=96.91 E-value=0.15 Score=56.39 Aligned_cols=66 Identities=18% Similarity=0.379 Sum_probs=42.0
Q ss_pred EEEEcCCCcEEEEeC-----------CCeEEEEeCCCCeeEeeecCC----ccEEEEEecCCEEEEee-cCcEEEEEeCC
Q 001123 424 ALTTSIDGMIWTGGA-----------NGLLLQWDPNGNRLQDFQYLP----FAVQCLCTFGSQIWVGY-MNGIVQVLDLE 487 (1149)
Q Consensus 424 ava~s~Dg~laSgs~-----------DgtIrlWD~tG~~l~tl~gH~----~~V~sls~dG~~LaSGs-~DGtIrlWD~~ 487 (1149)
.+++.++|.||.+.. .+.|..+|.+|+.+..+.... ..+.++...+..|+.++ ..+.|..++++
T Consensus 233 gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 233 NIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC-
T ss_pred CeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecc
Confidence 355677777665543 356888888888887776432 34556655555566554 57789999976
Q ss_pred Cc
Q 001123 488 GN 489 (1149)
Q Consensus 488 G~ 489 (1149)
.+
T Consensus 313 ~~ 314 (322)
T 2fp8_A 313 KK 314 (322)
T ss_dssp --
T ss_pred cc
Confidence 43
No 280
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.91 E-value=0.09 Score=57.57 Aligned_cols=173 Identities=14% Similarity=0.111 Sum_probs=103.8
Q ss_pred CCEEEEEEeCCCcE-EEEECCC--cEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEE
Q 001123 242 GPVLSLCISSYGDL-WSGSEGG--GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL 318 (1149)
Q Consensus 242 ~~VtsVafSpdG~L-~SGS~Dg--TIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~la 318 (1149)
.-...+.|+ ++.| .|.+.+| +|++.|+++++....+...... -...++
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~----------------------------FgeGit 93 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRY----------------------------FGEGIS 93 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTC----------------------------CEEEEE
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCcc----------------------------ceeEEE
Confidence 346889999 6776 4777776 9999999987654332111000 001112
Q ss_pred EcCCCCEEEEec--CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeeeecccc
Q 001123 319 SDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR 396 (1149)
Q Consensus 319 s~~~~~~v~Sas--d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f~~~~~ 396 (1149)
. .+.+||-+. ++.+.++|..|++.+.++...+.- ++
T Consensus 94 ~--~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG----------------------------------~g------ 131 (262)
T 3nol_A 94 D--WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG----------------------------------WG------ 131 (262)
T ss_dssp E--ETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC----------------------------------CC------
T ss_pred E--eCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCc----------------------------------eE------
Confidence 2 234666554 567999999999998887532110 00
Q ss_pred ceEeecCCcEEEEeecccccCCCCceEEEEEcCC-CcEEEEeCCCeEEEEeC-CCCeeEeeecC--C---ccEEEEEecC
Q 001123 397 NAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID-GMIWTGGANGLLLQWDP-NGNRLQDFQYL--P---FAVQCLCTFG 469 (1149)
Q Consensus 397 ~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~D-g~laSgs~DgtIrlWD~-tG~~l~tl~gH--~---~~V~sls~dG 469 (1149)
+.+| +.|+.+..+++|.++|. +.+.++++.-. . ..++.+.+.+
T Consensus 132 ------------------------------lt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~ 181 (262)
T 3nol_A 132 ------------------------------LTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVD 181 (262)
T ss_dssp ------------------------------EEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEET
T ss_pred ------------------------------EecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEEC
Confidence 1122 34555555678999999 67887776542 2 2345565433
Q ss_pred CEEEEee-cCcEEEEEeCC-Cceeeeeecc------------CCCeEEEEe--cCCeEEeec
Q 001123 470 SQIWVGY-MNGIVQVLDLE-GNLLGGWVAH------------SSPVIKMAV--GAGYIFTLA 515 (1149)
Q Consensus 470 ~~LaSGs-~DGtIrlWD~~-G~~l~~l~gH------------~~~V~sLa~--Dg~~LaSgS 515 (1149)
.+|+++. .+..|.+.|.+ |+.+..+... .+.-+.||. +++.|+..+
T Consensus 182 G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 182 GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 3566665 68899999975 8876665532 123467885 445555443
No 281
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.87 E-value=0.0011 Score=62.84 Aligned_cols=68 Identities=15% Similarity=0.228 Sum_probs=51.1
Q ss_pred CceEeecCcEEe-----ccceeEEEEEEecCCeeeEEEEEeecCCccccCCCCCCCCCCCCCCCCCCCeEEecCceeeCC
Q 001123 967 PETIVSTNNIII-----QNQDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIKP 1041 (1149)
Q Consensus 967 p~~~~~~~~i~~-----~~~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wl~v~p~~g~i~p 1041 (1149)
|++.++...|+| +...++.++|+|+|.. ++.|++.... ..|..++.++|..|.|.|
T Consensus 8 P~i~~~~~~ldFG~v~~g~~~~~~~~l~N~g~~-p~~~~~~~~~------------------~~~~~~f~v~p~~g~i~p 68 (112)
T 2e6j_A 8 PKIHFNFELLDIGKVFTGSAHCYEAILYNKGSI-DALFNMTPPT------------------SALGACFVFSPKEGIIEP 68 (112)
T ss_dssp CSEEESCSEEEEEEEESSCCEEEEEEEEECCSS-CEEEEECCCS------------------SHHHHHCEEESSEEEECT
T ss_pred CEEEECcccEecEeEEECCEEEEEEEEEECCcc-eEEEEEecCC------------------ccccCcEEEECCcCEECC
Confidence 555555555555 4567889999999998 9999986310 012245999999999999
Q ss_pred CCeeEEEEEEee
Q 001123 1042 DRTAEMSVHHED 1053 (1149)
Q Consensus 1042 ~~~~~i~~~~~~ 1053 (1149)
|++.+|+|+..-
T Consensus 69 g~~~~i~V~f~~ 80 (112)
T 2e6j_A 69 SGVQAIQISFSS 80 (112)
T ss_dssp TBCCEEEEEECC
T ss_pred CCEEEEEEEEEC
Confidence 999999999643
No 282
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.85 E-value=0.22 Score=60.68 Aligned_cols=52 Identities=19% Similarity=0.322 Sum_probs=37.3
Q ss_pred cCcEEEEEeCC-CceeeeeeccCCCeE--EEEecCCeEEeecCCCceeeeeccCCC
Q 001123 477 MNGIVQVLDLE-GNLLGGWVAHSSPVI--KMAVGAGYIFTLANHGGIRGWNVTSPG 529 (1149)
Q Consensus 477 ~DGtIrlWD~~-G~~l~~l~gH~~~V~--sLa~Dg~~LaSgS~DgtIRlWdl~sp~ 529 (1149)
.+|.|..||+. |+.+-....+. ++. .++..+..++.++.|+.++.||..+..
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~ 518 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGK 518 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCC
Confidence 36899999975 88765554332 222 234567888899999999999987643
No 283
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.84 E-value=0.005 Score=59.52 Aligned_cols=88 Identities=18% Similarity=0.263 Sum_probs=65.6
Q ss_pred CCceEeecCcEEeccceeEEEEEEecCCeeeEEEEEeecCCccccCCCCCCCCCCCCCCCCCCCeEEecCceeeCCCCee
Q 001123 966 IPETIVSTNNIIIQNQDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIKPDRTA 1045 (1149)
Q Consensus 966 ~p~~~~~~~~i~~~~~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wl~v~p~~g~i~p~~~~ 1045 (1149)
+|+ .++.+....+...++.+.|+|+|.. ++.|++.. +.=..|+|..|.|.||+++
T Consensus 28 ~p~-~l~fg~~~v~~~~~~~~~l~N~g~~-~~~f~~~~-----------------------~~~F~i~P~~g~L~pg~~~ 82 (122)
T 2ys4_A 28 FPD-KLNFSTCPVKYSTQKILLVRNIGNK-NAVFHIKT-----------------------CRPFSIEPAIGTLNVGESM 82 (122)
T ss_dssp CCS-EECCCSEESSSCEEEEEEEECCSSS-CEEEEEEC-----------------------CTTEEEESSEEEECTTCEE
T ss_pred CCC-eeecCCeecCCeEEEEEEEEECCCC-CEEEEEec-----------------------CCCeEEECCcCEECCCCEE
Confidence 343 5667777777788999999999997 89999763 1235899999999999999
Q ss_pred EEEEEEeeccchhhhhcCCCCCCcccCcCcceeEEEEEEEecccccceeeEEEee
Q 001123 1046 EMSVHHEDFQTLEEFVDGVPQNWWCEDTRDQEVVLVLKVRGRYSTETRNHRIRVR 1100 (1149)
Q Consensus 1046 ~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~e~~Lvl~v~~~~~~~~~~h~i~v~ 1100 (1149)
+|+|+..-.. ...-+..|++++++| .++.|++.
T Consensus 83 ~i~V~F~P~~-----------------~g~~~~~l~v~~~~g-----~~~~v~L~ 115 (122)
T 2ys4_A 83 QLEVEFEPQS-----------------VGDHSGRLIVCYDTG-----EKVFVSLY 115 (122)
T ss_dssp EEEEEECCSS-----------------SBCCCCBCEEEESSS-----CEECCEEC
T ss_pred EEEEEEEcCC-----------------CccEEEEEEEEECCC-----CEEEEEEE
Confidence 9999974321 123466778888777 55666664
No 284
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.82 E-value=1.5 Score=54.69 Aligned_cols=316 Identities=16% Similarity=0.206 Sum_probs=156.9
Q ss_pred EEEEEee-CCeEEEeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCC
Q 001123 135 LRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (1149)
Q Consensus 135 l~~l~~~-~~~l~ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DG 213 (1149)
+++|..+ .+.||.|.++++.+++.++...... . . ....+ .++. ...|.++..+.+|. ||-|...|
T Consensus 234 i~~i~~d~~g~lWigT~~Gl~~~~~~~~~~~~~--------~-~-~~~~~--~~l~-~~~i~~i~~D~~g~-lWiGT~~G 299 (758)
T 3ott_A 234 IKSLALDGNGDLLAGTDNGLYVYHNDTTPLQHI--------I-H-DSRNI--QSLT-NNIIWNIFADQEHN-IWLGTDYG 299 (758)
T ss_dssp EEEEEECTTCCEEEEETTEEEEECCTTSCCEEE--------C-C-CTTCT--TSCS-CSCEEEEEECTTCC-EEEEESSS
T ss_pred EEEEEEcCCCCEEEEeCCceeEEecCCCcEEEE--------E-c-CCCCc--CcCC-cCeEEEEEEcCCCC-EEEEeCCc
Confidence 4455554 6788887777888888765432110 0 0 00000 0122 45789999888774 67777777
Q ss_pred eEEEEECCCCCCCCCCCccceEEee-----cCCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcce-ee-ecCCCcceee
Q 001123 214 RIMCWKMNARLLDSDDGFGEVLSWQ-----AHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEK-AL-SLKPEERHTA 286 (1149)
Q Consensus 214 tIRvWdl~~g~~~~~~~~~~~~~l~-----GH~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~~-~~-~l~~~~~~~~ 286 (1149)
+-+..... . +. ..... .....|.++...++|.||-|+.+|.. .++..++.. .. .+...
T Consensus 300 -l~~~~~~~-~------~~-~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~Gl~-~~~~~~~~~~~~~~~~~~----- 364 (758)
T 3ott_A 300 -ISLSRYNS-A------LQ-FIPISQITGTGDGNQFYSLFRDSKGFYWFGGANGLI-RFTDPAGERHDAIWYRMG----- 364 (758)
T ss_dssp -EEEECCCC--------CE-EEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTEEE-EESCTTSSCCCCEEECTT-----
T ss_pred -ccccccCC-c------ee-EEecccCCCCCCCceEEEEEEcCCCCEEEeeCCcce-eecccccccceeEEeccC-----
Confidence 43433221 1 11 11110 11346999999999999998877644 445433211 00 00000
Q ss_pred EEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEecCCceeeEEeeccCCCc
Q 001123 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (1149)
Q Consensus 287 a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~ 366 (1149)
.... ......+.+++.+.+ +.||-+.++.+..+|..+++.......+... .....
T Consensus 365 --------------~~~~---~l~~~~v~~i~~d~~-g~lWigt~~GL~~~~~~~~~~~~~~~~~~~~-------~~~~~ 419 (758)
T 3ott_A 365 --------------DKTY---PLSHNRIRHIYEDKE-QQLWIATDGSINRYDYATRQFIHYNIVDNTG-------TYNTN 419 (758)
T ss_dssp --------------CSSS---CCSCSCEEEEEECTT-SCEEEEETTEEEEEETTTTEEEEEEEECCC---------CBSS
T ss_pred --------------CcCC---CCCCCceEEEEECCC-CCEEEEeCCcHhhcCcCCCcEEEeecCCCcC-------CCCCc
Confidence 0000 012245677766554 4677777778999999888654322111100 00000
Q ss_pred cccccceeeEEecCCCCccceeeeeeccccceEeecC-CcEEEEeec-------ccc---------cC-CCCceEEEEEc
Q 001123 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA-DAVRRVAAK-------GGF---------GD-DNRRTEALTTS 428 (1149)
Q Consensus 367 ~~~~~~~~~~~s~~~k~~~~~si~f~~~~~~~i~G~~-d~v~rv~~~-------g~~---------~~-~~~~V~ava~s 428 (1149)
.+.++.. +....+..|.. +|+.++... ..+ .+ ....|.++...
T Consensus 420 ------------------~v~~i~~-d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d 480 (758)
T 3ott_A 420 ------------------WTYYIFE-DTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPD 480 (758)
T ss_dssp ------------------SEEEEEE-CTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEEC
T ss_pred ------------------eEEEEEE-cCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEc
Confidence 0000000 00112333332 344433211 001 00 12347888888
Q ss_pred CCCcEEE-EeCCCeEEEEeCCCCeeEeeecC----CccEEEEEec-CCEEEEeecCcEEEEEeCCCceeeeee--cc-CC
Q 001123 429 IDGMIWT-GGANGLLLQWDPNGNRLQDFQYL----PFAVQCLCTF-GSQIWVGYMNGIVQVLDLEGNLLGGWV--AH-SS 499 (1149)
Q Consensus 429 ~Dg~laS-gs~DgtIrlWD~tG~~l~tl~gH----~~~V~sls~d-G~~LaSGs~DGtIrlWD~~G~~l~~l~--gH-~~ 499 (1149)
.+|.||. ++..+-|..+|.....+..+... ...+.++..| ...|+.|+..| |..+|........+. +- ..
T Consensus 481 ~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~~G-l~~~~~~~~~~~~~~~~gl~~~ 559 (758)
T 3ott_A 481 NEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGFHGG-VMRINPKDESQQSISFGSFSNN 559 (758)
T ss_dssp TTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEETTE-EEEECC--CCCCBCCCCC---C
T ss_pred CCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEecCc-eEEEecCCCceEEecccCCCcc
Confidence 8899886 34445588889843334443211 2467888775 35677787766 778886533222221 11 24
Q ss_pred CeEEEEecCCeEEeecCCCceeeeec
Q 001123 500 PVIKMAVGAGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 500 ~V~sLa~Dg~~LaSgS~DgtIRlWdl 525 (1149)
.|.++..+...|+-++..| +-.+|.
T Consensus 560 ~i~~i~~~~g~lWi~t~~G-l~~~~~ 584 (758)
T 3ott_A 560 EILSMTCVKNSIWVSTTNG-LWIIDR 584 (758)
T ss_dssp CEEEEEEETTEEEEEESSC-EEEEET
T ss_pred ceEEEEECCCCEEEECCCC-eEEEcC
Confidence 5777765444555555444 555564
No 285
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.67 E-value=0.17 Score=55.35 Aligned_cols=113 Identities=11% Similarity=0.058 Sum_probs=68.4
Q ss_pred EEEEEcCCCCEEEEEeCCC--eEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCC-cEEEEE-CCCcEEEEeCC
Q 001123 195 MCMVGDEASGVVWSGHRDG--RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-DLWSGS-EGGGIKIWPWE 270 (1149)
Q Consensus 195 ~~lafs~dg~~LaSGS~DG--tIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG-~L~SGS-~DgTIRVWdl~ 270 (1149)
-.|.|+ ++.+..|.+.+| .|++.|+++++. ..++.-. .......++++| +|+... .++++.++|.+
T Consensus 46 qGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv--------~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~ 115 (262)
T 3nol_A 46 EGFFYR-NGYFYESTGLNGRSSIRKVDIESGKT--------LQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIR 115 (262)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEECTTTCCE--------EEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred ceEEEE-CCEEEEECCCCCCceEEEEECCCCcE--------EEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECc
Confidence 357888 678888988887 999999999762 3333221 233333333334 476444 58999999998
Q ss_pred CcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEe-cCCceEEEEcCCccEEEEEe
Q 001123 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVFN 349 (1149)
Q Consensus 271 t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sa-sd~tIrLWD~~TG~~L~~l~ 349 (1149)
+.+...++.... +...++ .++.+++.+ +.+.|.++|..|.+.++.+.
T Consensus 116 t~~~~~ti~~~~------------------------------eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~ 163 (262)
T 3nol_A 116 NLRQVRSFNYDG------------------------------EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTIT 163 (262)
T ss_dssp TCCEEEEEECSS------------------------------CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEE
T ss_pred cCcEEEEEECCC------------------------------CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEE
Confidence 876544332110 111122 223444433 34669999999988777654
No 286
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=96.53 E-value=0.25 Score=58.10 Aligned_cols=124 Identities=14% Similarity=0.147 Sum_probs=72.0
Q ss_pred EEEEc--CCCCE-EEEEeCCCeEEEEECCCCCCCCCCCccceEEee--------cCCCCEEEEEEeCCCcEEEEECC---
Q 001123 196 CMVGD--EASGV-VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ--------AHRGPVLSLCISSYGDLWSGSEG--- 261 (1149)
Q Consensus 196 ~lafs--~dg~~-LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~--------GH~~~VtsVafSpdG~L~SGS~D--- 261 (1149)
|.+++ .++++ +++|-.+++|.+.|+.+.. ...+...+.+ |-+ .=..+..+|+|-++|+..|
T Consensus 86 ~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p----~~p~~~k~ie~~~~~~~~g~s-~Ph~~~~~pdGi~Vs~~g~~~g 160 (462)
T 2ece_A 86 CPNGKPNIERRFLIVPGLRSSRIYIIDTKPNP----REPKIIKVIEPEEVKKVSGYS-RLHTVHCGPDAIYISALGNEEG 160 (462)
T ss_dssp STTCCTTCCSCEEEEEBTTTCCEEEEECCSCT----TSCEEEEEECHHHHHHHHCEE-EEEEEEECSSCEEEEEEEETTS
T ss_pred ccccCCCccCCEEEEccCCCCeEEEEECCCCC----CCceeeeeechhhcccccCCC-cccceeECCCeEEEEcCCCcCC
Confidence 44556 67654 5577789999999997632 1122233332 211 2235678899933555544
Q ss_pred ---CcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec--------
Q 001123 262 ---GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-------- 330 (1149)
Q Consensus 262 ---gTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-------- 330 (1149)
+.|-+.|.+|.+........... +. ... .+.+++++..++++.
T Consensus 161 ~~~g~v~vlD~~T~~v~~~~~~~~~~---------------~~--------~~Y---d~~~~p~~~~mvsS~wg~p~~~~ 214 (462)
T 2ece_A 161 EGPGGILMLDHYSFEPLGKWEIDRGD---------------QY--------LAY---DFWWNLPNEVLVSSEWAVPNTIE 214 (462)
T ss_dssp CSCCEEEEECTTTCCEEEECCSBCTT---------------CC--------CCC---CEEEETTTTEEEECBCCCHHHHT
T ss_pred CCCCeEEEEECCCCeEEEEEccCCCC---------------cc--------ccc---eEEECCCCCEEEEccCcCccccc
Confidence 78999998876644333211000 00 000 122334455555543
Q ss_pred ------------CCceEEEEcCCccEEEEEec
Q 001123 331 ------------FLSFALWDARTRELLKVFNI 350 (1149)
Q Consensus 331 ------------d~tIrLWD~~TG~~L~~l~~ 350 (1149)
.++|.+||+.+++.++++..
T Consensus 215 ~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v 246 (462)
T 2ece_A 215 DGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL 246 (462)
T ss_dssp TCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred cccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence 47899999999998888875
No 287
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.48 E-value=0.47 Score=51.33 Aligned_cols=157 Identities=14% Similarity=0.098 Sum_probs=96.7
Q ss_pred cC--CCCEEEEEEeCCCcEE-EEECC--CcEEEEeCCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCC
Q 001123 239 AH--RGPVLSLCISSYGDLW-SGSEG--GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSD 313 (1149)
Q Consensus 239 GH--~~~VtsVafSpdG~L~-SGS~D--gTIRVWdl~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~d 313 (1149)
-| ..-+..+.|++ +.|+ |.+.+ ..|++.|+++++........... -
T Consensus 16 phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~----------------------------f 66 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY----------------------------F 66 (243)
T ss_dssp ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC----------------------------C
T ss_pred CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc----------------------------c
Confidence 46 35688999997 6764 77765 49999999987654332111100 0
Q ss_pred eEEEEEcCCCCEEEEec--CCceEEEEcCCccEEEEEecCCceeeEEeeccCCCccccccceeeEEecCCCCccceeeee
Q 001123 314 IKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGF 391 (1149)
Q Consensus 314 v~~las~~~~~~v~Sas--d~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~~~~~~~~~~~~~s~~~k~~~~~si~f 391 (1149)
...++.. +.+||-.. ++.+.++|..|.+.+.++...+.- +
T Consensus 67 geGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G----------------------------------w-- 108 (243)
T 3mbr_X 67 GAGIVAW--RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG----------------------------------W-- 108 (243)
T ss_dssp EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC----------------------------------C--
T ss_pred eeEEEEe--CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc----------------------------------e--
Confidence 0111121 34555544 567999999999988887532110 0
Q ss_pred eccccceEeecCCcEEEEeecccccCCCCceEEEEEcCCCcEEEEeCCCeEEEEeC-CCCeeEeeec--CC---ccEEEE
Q 001123 392 FQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQY--LP---FAVQCL 465 (1149)
Q Consensus 392 ~~~~~~~i~G~~d~v~rv~~~g~~~~~~~~V~ava~s~Dg~laSgs~DgtIrlWD~-tG~~l~tl~g--H~---~~V~sl 465 (1149)
.+ ...++.|+.+..+++|.++|. +.+.++++.- +. ..++-+
T Consensus 109 --------------------------------gl-t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeL 155 (243)
T 3mbr_X 109 --------------------------------AL-TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNEL 155 (243)
T ss_dssp --------------------------------EE-EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred --------------------------------EE-eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceee
Confidence 01 112234666566889999999 7788777654 22 245566
Q ss_pred EecCCEEEEee-cCcEEEEEeCC-Cceeeeee
Q 001123 466 CTFGSQIWVGY-MNGIVQVLDLE-GNLLGGWV 495 (1149)
Q Consensus 466 s~dG~~LaSGs-~DGtIrlWD~~-G~~l~~l~ 495 (1149)
.+.+.+|++.. .+..|.+.|.+ |+.+..+.
T Consensus 156 e~~~G~lyanvw~s~~I~vIDp~tG~V~~~id 187 (243)
T 3mbr_X 156 EWVNGELLANVWLTSRIARIDPASGKVVAWID 187 (243)
T ss_dssp EEETTEEEEEETTTTEEEEECTTTCBEEEEEE
T ss_pred EEeCCEEEEEECCCCeEEEEECCCCCEEEEEE
Confidence 55444566665 57799999975 88766555
No 288
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.47 E-value=2.5 Score=51.32 Aligned_cols=85 Identities=21% Similarity=0.316 Sum_probs=56.6
Q ss_pred CCCeEEEEeC-CCCeeEeeecCCccEE--EEEecCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeEE-E--EecCC-
Q 001123 438 ANGLLLQWDP-NGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK-M--AVGAG- 509 (1149)
Q Consensus 438 ~DgtIrlWD~-tG~~l~tl~gH~~~V~--sls~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~s-L--a~Dg~- 509 (1149)
.+|+|.-||+ +|+.+=....+. ++. .+...|..++.|+.||.++.||.+ |+++..++...+.+-. + ..||+
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~q 542 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEE
Confidence 4689999999 898775544322 222 345568889999999999999975 9998877754432211 2 36776
Q ss_pred eEEeecC-CCceeee
Q 001123 510 YIFTLAN-HGGIRGW 523 (1149)
Q Consensus 510 ~LaSgS~-DgtIRlW 523 (1149)
|++..+. .+.+-+|
T Consensus 543 Yv~~~~G~gg~~~~~ 557 (582)
T 1flg_A 543 YLGVTVGYGGAVPLW 557 (582)
T ss_dssp EEEEEECCCSHHHHH
T ss_pred EEEEEccCCCccccc
Confidence 5665443 4556566
No 289
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.41 E-value=1.4 Score=50.44 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=49.8
Q ss_pred CCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEee-cCCCCEEEEEEeCC-CcE-EEEECCCcEEE
Q 001123 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSY-GDL-WSGSEGGGIKI 266 (1149)
Q Consensus 191 ~~~V~~lafs~-dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~-GH~~~VtsVafSpd-G~L-~SGS~DgTIRV 266 (1149)
...+..++|++ ++.+.|+-...+.|..|+++++. ...+. ........|++.+. +.| |+-+..+.|.+
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~---------~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~ 185 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSN---------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEV 185 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC---------EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEE
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC---------cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEE
Confidence 34577899996 46677787788999999998743 22222 22334577999975 455 67677788888
Q ss_pred EeCCC
Q 001123 267 WPWEA 271 (1149)
Q Consensus 267 Wdl~t 271 (1149)
.+++.
T Consensus 186 ~~~dg 190 (386)
T 3v65_B 186 ANLDG 190 (386)
T ss_dssp CBTTS
T ss_pred EeCCC
Confidence 87754
No 290
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.29 E-value=1.8 Score=47.49 Aligned_cols=72 Identities=14% Similarity=0.125 Sum_probs=48.9
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEE--CCC-cEEEEe
Q 001123 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS--EGG-GIKIWP 268 (1149)
Q Consensus 192 ~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS--~Dg-TIRVWd 268 (1149)
.....++++++|.++++-..++.|..||.+++. ...+. -.+...+|+++++|+|+.+. .++ .|..++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~---------~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d 101 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ---------QIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLV 101 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE---------EEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce---------EEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEc
Confidence 356689999999988888889999999987632 22222 23468899999999975444 222 344455
Q ss_pred CCCcc
Q 001123 269 WEAIE 273 (1149)
Q Consensus 269 l~t~~ 273 (1149)
..+++
T Consensus 102 ~~~g~ 106 (306)
T 2p4o_A 102 KSDGT 106 (306)
T ss_dssp CTTSC
T ss_pred CCCCe
Confidence 55443
No 291
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.23 E-value=1 Score=54.66 Aligned_cols=82 Identities=24% Similarity=0.345 Sum_probs=53.5
Q ss_pred CCCeEEEEeC-CCCeeEeeecCCccEE--EEEecCCEEEEeecCcEEEEEeCC-CceeeeeeccCC----CeEEEEecCC
Q 001123 438 ANGLLLQWDP-NGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSS----PVIKMAVGAG 509 (1149)
Q Consensus 438 ~DgtIrlWD~-tG~~l~tl~gH~~~V~--sls~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~----~V~sLa~Dg~ 509 (1149)
.+|.|..||. +|+.+-++... ..+. .+...|..++.|+.||.|+.||.+ |+++..+..... ++. ...+|+
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~-~~~~G~ 519 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMT-YSFKGK 519 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE-EEETTE
T ss_pred CCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEE-EEECCE
Confidence 4688999999 89887665432 2222 234568888999999999999965 998877764332 222 236776
Q ss_pred -eEEeecCCCcee
Q 001123 510 -YIFTLANHGGIR 521 (1149)
Q Consensus 510 -~LaSgS~DgtIR 521 (1149)
|+++.+..+.++
T Consensus 520 ~yv~~~~G~~g~~ 532 (571)
T 2ad6_A 520 QYIGSMYGVGGWP 532 (571)
T ss_dssp EEEEEEECCCTTT
T ss_pred EEEEEECCCCCcc
Confidence 444444454433
No 292
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.21 E-value=2.1 Score=47.68 Aligned_cols=101 Identities=15% Similarity=0.086 Sum_probs=64.2
Q ss_pred EEEeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCC
Q 001123 145 LWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNAR 223 (1149)
Q Consensus 145 l~ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~d-g~~LaSGS~DGtIRvWdl~~g 223 (1149)
|+-+....|+..+++...... ...+.+...+.+|+|++. +.+.|+-...+.|..++++++
T Consensus 7 ll~~~~~~I~~i~l~~~~~~~-------------------~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~ 67 (318)
T 3sov_A 7 LLYANRRDLRLVDATNGKENA-------------------TIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKT 67 (318)
T ss_dssp EEEECEEEEEEEETTCTTSCC-------------------EEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSS
T ss_pred EEEEccCeEEEEECCCCceEE-------------------EEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCC
Confidence 333445679999987442111 111222335678999974 677888888899999999875
Q ss_pred CCCCCCCccceEEeecCCCCEEEEEEeCC-CcE-EEEECCCcEEEEeCCC
Q 001123 224 LLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDL-WSGSEGGGIKIWPWEA 271 (1149)
Q Consensus 224 ~~~~~~~~~~~~~l~GH~~~VtsVafSpd-G~L-~SGS~DgTIRVWdl~t 271 (1149)
.. ....+..--....++++.+. +.| |+-+..+.|.+.+++.
T Consensus 68 ~~-------~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG 110 (318)
T 3sov_A 68 ES-------VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG 110 (318)
T ss_dssp SC-------CCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred Cc-------eEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCC
Confidence 31 11112222345678999974 455 6777778999999864
No 293
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.11 E-value=0.13 Score=64.66 Aligned_cols=102 Identities=13% Similarity=0.032 Sum_probs=54.7
Q ss_pred EEEcCCCc-EE-EEeC--CCeEEEEeC-CC--Ce-eEeee-cCCccEEEEE-ecCCEEEEeecC-----cEEEEEeCCC-
Q 001123 425 LTTSIDGM-IW-TGGA--NGLLLQWDP-NG--NR-LQDFQ-YLPFAVQCLC-TFGSQIWVGYMN-----GIVQVLDLEG- 488 (1149)
Q Consensus 425 va~s~Dg~-la-Sgs~--DgtIrlWD~-tG--~~-l~tl~-gH~~~V~sls-~dG~~LaSGs~D-----GtIrlWD~~G- 488 (1149)
+.+||||+ |+ +... ...|.++|+ ++ +. ++.+. +......++. .+|++|+..+.. ..|.++|+++
T Consensus 276 ~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~ 355 (751)
T 2xe4_A 276 MYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQP 355 (751)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTST
T ss_pred EEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCc
Confidence 34566665 33 2221 335777888 33 23 14343 3344556665 457766554433 3677778763
Q ss_pred ceeee-eeccCC--CeEEEEecCC-eEEeecCCCceeeeecc
Q 001123 489 NLLGG-WVAHSS--PVIKMAVGAG-YIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 489 ~~l~~-l~gH~~--~V~sLa~Dg~-~LaSgS~DgtIRlWdl~ 526 (1149)
..... +..|.. .+.+++++++ .+++...|+..++|-+.
T Consensus 356 ~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~d 397 (751)
T 2xe4_A 356 SDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMM 397 (751)
T ss_dssp TCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEE
T ss_pred ccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEe
Confidence 33333 445544 3455666555 45677778877766543
No 294
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=95.93 E-value=0.12 Score=56.65 Aligned_cols=106 Identities=8% Similarity=0.027 Sum_probs=77.4
Q ss_pred eEEEEEcCCCcEEEEeC---CCeEEEEeC-CCCeeEeeecCCc-cEEEEEecCCEEEEee-cCcEEEEEeCC-Cceeeee
Q 001123 422 TEALTTSIDGMIWTGGA---NGLLLQWDP-NGNRLQDFQYLPF-AVQCLCTFGSQIWVGY-MNGIVQVLDLE-GNLLGGW 494 (1149)
Q Consensus 422 V~ava~s~Dg~laSgs~---DgtIrlWD~-tG~~l~tl~gH~~-~V~sls~dG~~LaSGs-~DGtIrlWD~~-G~~l~~l 494 (1149)
...+++++|+.|+.++. +++|++.|. +|+.++++.-... -.-.++++|++|+.+. .++.|.++|.+ ++.+.++
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i 102 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNF 102 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEE
Confidence 45678888888876543 579999999 8999888653222 2336777888887776 57899999975 7778777
Q ss_pred eccCCCeEEEEecCCeEEeecCCCceeeeeccC
Q 001123 495 VAHSSPVIKMAVGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 495 ~gH~~~V~sLa~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
..-...=+.+++||+.++.+..+++|.+.|..+
T Consensus 103 ~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t 135 (266)
T 2iwa_A 103 THQMKDGWGLATDGKILYGSDGTSILYEIDPHT 135 (266)
T ss_dssp ECCSSSCCEEEECSSSEEEECSSSEEEEECTTT
T ss_pred ECCCCCeEEEEECCCEEEEECCCCeEEEEECCC
Confidence 522223356888998888766788999998755
No 295
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.92 E-value=1.7 Score=53.23 Aligned_cols=78 Identities=19% Similarity=0.293 Sum_probs=51.6
Q ss_pred CCCeEEEEeC-CCCeeEeeecCCccEE--EEEecCCEEEEeecCcEEEEEeCC-CceeeeeeccCCCeE---EEEecCC-
Q 001123 438 ANGLLLQWDP-NGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVI---KMAVGAG- 509 (1149)
Q Consensus 438 ~DgtIrlWD~-tG~~l~tl~gH~~~V~--sls~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~gH~~~V~---sLa~Dg~- 509 (1149)
.+|.|.-||+ +|+.+=..... .++. .++..|..|+.|+.||.|+.||.+ |+++-.++-..+.+. ....||+
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q 529 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ 529 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence 3578999999 89876554321 1222 355678889999999999999965 998877764433221 1236776
Q ss_pred eEEeecC
Q 001123 510 YIFTLAN 516 (1149)
Q Consensus 510 ~LaSgS~ 516 (1149)
|+++.+.
T Consensus 530 yv~~~~G 536 (599)
T 1w6s_A 530 YVAIYYG 536 (599)
T ss_dssp EEEEEEC
T ss_pred EEEEEcc
Confidence 5665543
No 296
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=95.89 E-value=0.41 Score=58.95 Aligned_cols=71 Identities=14% Similarity=0.044 Sum_probs=44.7
Q ss_pred EEEEcCCCCEEEEEeC-CCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcE-EEEE-CC-----CcEEEE
Q 001123 196 CMVGDEASGVVWSGHR-DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGS-EG-----GGIKIW 267 (1149)
Q Consensus 196 ~lafs~dg~~LaSGS~-DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L-~SGS-~D-----gTIRVW 267 (1149)
++++..+|++++.|+. +..+.+||..++.. ..+..+...+.. .++++.++|+| +.|+ .+ .++.+|
T Consensus 247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W------~~~~~~~~~R~~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~y 319 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSW------IPGPDMQVARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVY 319 (656)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGTEE------EECCCCSSCCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEE
T ss_pred cccCCCCCCEEEeCCCCCCceEEecCcCCce------eECCCCCccccc-cceEEecCCeEEEEeCcccCCcccccceEe
Confidence 4677889999999994 56899999876431 111111111211 24556678884 5666 44 579999
Q ss_pred eCCCcc
Q 001123 268 PWEAIE 273 (1149)
Q Consensus 268 dl~t~~ 273 (1149)
|..+..
T Consensus 320 d~~t~~ 325 (656)
T 1k3i_A 320 SPSSKT 325 (656)
T ss_dssp ETTTTE
T ss_pred CCCCCc
Confidence 987643
No 297
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=95.85 E-value=0.6 Score=57.46 Aligned_cols=71 Identities=7% Similarity=0.109 Sum_probs=48.2
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------eEEEEECCCCCCCCCCCccceEEee-cCCCCEEEEEEeCCCcE-EEEE-C
Q 001123 196 CMVGDE-ASGVVWSGHRDG-----------RIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGDL-WSGS-E 260 (1149)
Q Consensus 196 ~lafs~-dg~~LaSGS~DG-----------tIRvWdl~~g~~~~~~~~~~~~~l~-GH~~~VtsVafSpdG~L-~SGS-~ 260 (1149)
++++.+ +|++++.|+.+. .+.+||+.++.. ..+..+. .|.....++++..+|+| +.|+ .
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w------~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~ 263 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV------SDRTVTVTKHDMFCPGISMDGNGQIVVTGGND 263 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCB------CCCEEEECSCCCSSCEEEECTTSCEEEECSSS
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcE------EeCcccCCCCCCccccccCCCCCCEEEeCCCC
Confidence 456666 899999998654 688999988653 2222332 23344456788899985 5777 4
Q ss_pred CCcEEEEeCCCc
Q 001123 261 GGGIKIWPWEAI 272 (1149)
Q Consensus 261 DgTIRVWdl~t~ 272 (1149)
+.++.+||..+.
T Consensus 264 ~~~v~~yd~~t~ 275 (656)
T 1k3i_A 264 AKKTSLYDSSSD 275 (656)
T ss_dssp TTCEEEEEGGGT
T ss_pred CCceEEecCcCC
Confidence 568999998764
No 298
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=95.81 E-value=0.27 Score=53.89 Aligned_cols=160 Identities=12% Similarity=0.107 Sum_probs=95.7
Q ss_pred eeEEEEEeeCCeEEE--eCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEe
Q 001123 133 CFLRTIVCTEEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (1149)
Q Consensus 133 ~~l~~l~~~~~~l~a--g~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS 210 (1149)
.|-+-|..+++.||. |.++.|++.|+++++..+.. .+..+|.+ .+++.. +++.+...
T Consensus 55 ~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-----------l~~~~Fge---------Git~~g-~~Ly~ltw 113 (268)
T 3nok_A 55 AFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-----------RLGNIFAE---------GLASDG-ERLYQLTW 113 (268)
T ss_dssp CCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-----------ECTTCCEE---------EEEECS-SCEEEEES
T ss_pred cccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-----------CCCCccee---------EEEEeC-CEEEEEEc
Confidence 366677778899986 45777999999998876540 11122322 244432 35666677
Q ss_pred CCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCCCcceeeecCCCcceeeEEE
Q 001123 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (1149)
Q Consensus 211 ~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a~~ 289 (1149)
.++.+.++|..+.+ .+.++.--.. ...+++||+ |+.+..+++|.++|.++.+....+.-
T Consensus 114 ~~~~v~V~D~~Tl~--------~~~ti~~~~e---GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V--------- 173 (268)
T 3nok_A 114 TEGLLFTWSGMPPQ--------RERTTRYSGE---GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQV--------- 173 (268)
T ss_dssp SSCEEEEEETTTTE--------EEEEEECSSC---CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEEC---------
T ss_pred cCCEEEEEECCcCc--------EEEEEeCCCc---eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEe---------
Confidence 89999999998754 3455542111 133445665 76555688999999988654322210
Q ss_pred eeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec--CCceEEEEcCCccEEEEEec
Q 001123 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNI 350 (1149)
Q Consensus 290 ~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas--d~tIrLWD~~TG~~L~~l~~ 350 (1149)
... +. +-..++-+.+. ++ +||... .+.|.+-|.+||+.+..+..
T Consensus 174 -~~~-----------g~---~v~~lNeLe~~-dG-~lyanvw~s~~I~vIDp~TG~V~~~Idl 219 (268)
T 3nok_A 174 -KLR-----------GQ---PVELINELECA-NG-VIYANIWHSSDVLEIDPATGTVVGVIDA 219 (268)
T ss_dssp -EET-----------TE---ECCCEEEEEEE-TT-EEEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred -CCC-----------Cc---ccccccccEEe-CC-EEEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence 000 00 00112223333 23 566543 46799999999999887753
No 299
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.70 E-value=3.5 Score=45.86 Aligned_cols=104 Identities=17% Similarity=0.188 Sum_probs=64.7
Q ss_pred CCceEEEEEcCCCcEEEEeCCCeEEEEeCC-CCeeEeee----cCCccEEEEEe--cCCEEEEeecCcEEEEEeCC-Cce
Q 001123 419 NRRTEALTTSIDGMIWTGGANGLLLQWDPN-GNRLQDFQ----YLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNL 490 (1149)
Q Consensus 419 ~~~V~ava~s~Dg~laSgs~DgtIrlWD~t-G~~l~tl~----gH~~~V~sls~--dG~~LaSGs~DGtIrlWD~~-G~~ 490 (1149)
...+..+++.+++.++.++.+|.+.+++.+ |+--..+. .+...+.++.+ ++..+++| .+|.| .+..+ |+-
T Consensus 204 ~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~t 281 (327)
T 2xbg_A 204 SRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQT 281 (327)
T ss_dssp SSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSS
T ss_pred CCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcc
Confidence 346677888899998888889999888543 43322222 12245778876 35555554 57777 34444 432
Q ss_pred eeeee---ccCCCeEEEEe-cCCeEEeecCCCceeeee
Q 001123 491 LGGWV---AHSSPVIKMAV-GAGYIFTLANHGGIRGWN 524 (1149)
Q Consensus 491 l~~l~---gH~~~V~sLa~-Dg~~LaSgS~DgtIRlWd 524 (1149)
=..+. .+...+++|.+ ++..++.++.+|+|.-++
T Consensus 282 W~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 282 WQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV 319 (327)
T ss_dssp CEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred cEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence 22222 23456777875 566678888899887665
No 300
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=95.62 E-value=0.16 Score=49.36 Aligned_cols=64 Identities=22% Similarity=0.385 Sum_probs=50.4
Q ss_pred ceEeecC-cEEecc----ceeEEEEEEecCCeeeEEEEEeecCCccccCCCCCCCCCCCCCCCCCCCeEEecCceeeCCC
Q 001123 968 ETIVSTN-NIIIQN----QDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIKPD 1042 (1149)
Q Consensus 968 ~~~~~~~-~i~~~~----~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wl~v~p~~g~i~p~ 1042 (1149)
.+.+++. .|.|.- +.+..|+|+|++.. ...|.+-+. .|.-+.|.|..|+|.||
T Consensus 8 ~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~-~vaFKVKTT---------------------~p~~y~VrP~~Gii~P~ 65 (126)
T 1msp_A 8 DINTQPSQKIVFNAPYDDKHTYHIKITNAGGR-RIGWAIKTT---------------------NMRRLSVDPPCGVLDPK 65 (126)
T ss_dssp CEEEESSSCEEEESCCSSCCCEEEEEEECSSS-CEEEEEEES---------------------CTTTEEEESCEEEECTT
T ss_pred eEEEcCCCeEEEcCcCCcceEEEEEEECCCCC-eEEEEEEcC---------------------CCCcEEEECCCeEECCC
Confidence 3566665 677753 46778999999986 788998641 25678999999999999
Q ss_pred CeeEEEEEEee
Q 001123 1043 RTAEMSVHHED 1053 (1149)
Q Consensus 1043 ~~~~i~~~~~~ 1053 (1149)
++++|.|....
T Consensus 66 ~s~~v~V~~q~ 76 (126)
T 1msp_A 66 EKVLMAVSCDT 76 (126)
T ss_dssp CEEEEEEEECC
T ss_pred CEEEEEEEecC
Confidence 99999998644
No 301
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.58 E-value=7 Score=48.55 Aligned_cols=332 Identities=14% Similarity=0.190 Sum_probs=169.6
Q ss_pred eEEEEEee-CCeEEEeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCC
Q 001123 134 FLRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (1149)
Q Consensus 134 ~l~~l~~~-~~~l~ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~D 212 (1149)
.+++|..+ .+.||.|.++++..+|..+..-... .. .. ...|.++.. .+ ..||-|..+
T Consensus 64 ~i~~i~~d~~g~lWigT~~Gl~~yd~~~~~f~~~-----------------~~--~~-~~~i~~i~~-~~-g~lWigt~~ 121 (758)
T 3ott_A 64 RIYCGVIIDNTYLYMGTDNGILVYNYRADRYEQP-----------------ET--DF-PTDVRTMAL-QG-DTLWLGALN 121 (758)
T ss_dssp CEEEEEEETTTEEEEEETTEEEEEETTTTEECCC-----------------SC--CC-CSCEEEEEE-ET-TEEEEEETT
T ss_pred eEEEEEEcCCCcEEEEeCCCeEEEeCCCCEEECc-----------------cc--CC-CceEEEEEe-cC-CcEEEEcCC
Confidence 45565555 7889998888899999765421110 00 00 234666654 34 467777777
Q ss_pred CeEEEEECCCCCCCCCCCccceEEee----c-CCCCEEEEEEeCCCcEEEEECCCcEEEEeCCCcceeeecCCCcceeeE
Q 001123 213 GRIMCWKMNARLLDSDDGFGEVLSWQ----A-HRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (1149)
Q Consensus 213 GtIRvWdl~~g~~~~~~~~~~~~~l~----G-H~~~VtsVafSpdG~L~SGS~DgTIRVWdl~t~~~~~~l~~~~~~~~a 287 (1149)
-+..++..++. ...+. + ....|.++...++|.||-|+.+| +..++..+.... .+....
T Consensus 122 -Gl~~~~~~~~~---------~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~G-l~~~~~~~~~~~-~~~~~~----- 184 (758)
T 3ott_A 122 -GLYTYQLQSRK---------LTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYNG-LCRYIPSNGKFE-GIPLPV----- 184 (758)
T ss_dssp -EEEEEETTTCC---------EEEECHHHHCCSCSCEEEEEECTTCCEEEEETTE-EEEEETTTTEEE-EECCCC-----
T ss_pred -cceeEeCCCCe---------EEEeccCCCCcCCCeEEEEEEcCCCCEEEEeCCC-HhhCccCCCceE-EecCCC-----
Confidence 46678876643 22221 1 13579999999889998888765 556776543211 000000
Q ss_pred EEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEecCCceEEEEcCCccEEEEEecCCceeeEEeeccCCC--
Q 001123 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPD-- 365 (1149)
Q Consensus 288 ~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sasd~tIrLWD~~TG~~L~~l~~~g~~~~~v~~S~~~~-- 365 (1149)
.. ......+.+++.+..+..||-+.++.+..+|..+++...........+.++.....+.
T Consensus 185 ------------~~------~~~~~~i~~i~~d~~~~~lWigt~~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW 246 (758)
T 3ott_A 185 ------------HS------SQSNLFVNSLLEDTTRQCVWIGTEGYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLL 246 (758)
T ss_dssp ------------CT------TCSSCCEEEEEEETTTTEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEE
T ss_pred ------------cc------ccccceeEEEEEECCCCEEEEEECCCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEE
Confidence 00 0011235666666666667766555677888877654321111111111111111100
Q ss_pred -----ccc--ccc-ceeeEEecC-C-----CCccceeeeeeccccceEeecCCcEEEEeecccc----------cCCCCc
Q 001123 366 -----FAM--EDE-FKTKIVTSS-K-----KDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGF----------GDDNRR 421 (1149)
Q Consensus 366 -----~~~--~~~-~~~~~~s~~-~-----k~~~~~si~f~~~~~~~i~G~~d~v~rv~~~g~~----------~~~~~~ 421 (1149)
+.. ... .....+... . ....+.++. .+....+..|...|+........+ ......
T Consensus 247 igT~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~-~D~~g~lWiGT~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (758)
T 3ott_A 247 AGTDNGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIF-ADQEHNIWLGTDYGISLSRYNSALQFIPISQITGTGDGNQ 325 (758)
T ss_dssp EEETTEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEE-ECTTCCEEEEESSSEEEECCCC-CEEEEHHHHSCSCCCCB
T ss_pred EEeCCceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEE-EcCCCCEEEEeCCcccccccCCceeEEecccCCCCCCCce
Confidence 000 000 000001000 0 001111211 122335666666565433211111 011245
Q ss_pred eEEEEEcCCCcEEEEeCCCeEEEEeC-CCC--eeEeeec-------CCccEEEEEec-CCEEEEeecCcEEEEEeCCCce
Q 001123 422 TEALTTSIDGMIWTGGANGLLLQWDP-NGN--RLQDFQY-------LPFAVQCLCTF-GSQIWVGYMNGIVQVLDLEGNL 490 (1149)
Q Consensus 422 V~ava~s~Dg~laSgs~DgtIrlWD~-tG~--~l~tl~g-------H~~~V~sls~d-G~~LaSGs~DGtIrlWD~~G~~ 490 (1149)
|.++....+|.||.|+.+| +..++. +++ ....+.. ....|.++..| ...|+.|+. +-|..+|..+..
T Consensus 326 v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~-~GL~~~~~~~~~ 403 (758)
T 3ott_A 326 FYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIATD-GSINRYDYATRQ 403 (758)
T ss_dssp EEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEET-TEEEEEETTTTE
T ss_pred EEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEeC-CcHhhcCcCCCc
Confidence 7788888889999998765 556665 442 1222211 12458888876 356888884 568899976433
Q ss_pred eeeee--c-----cCCCeEEEEecC-CeEEeecCCCceeeeec
Q 001123 491 LGGWV--A-----HSSPVIKMAVGA-GYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 491 l~~l~--g-----H~~~V~sLa~Dg-~~LaSgS~DgtIRlWdl 525 (1149)
...+. . ....|.++..|. ..|+-|...+.+..+|.
T Consensus 404 ~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~ 446 (758)
T 3ott_A 404 FIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDK 446 (758)
T ss_dssp EEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEH
T ss_pred EEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEcc
Confidence 22221 1 234688887643 45666766677777773
No 302
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=95.57 E-value=4.1 Score=45.85 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=50.6
Q ss_pred CCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEe-ecCCCCEEEEEEeCC-CcE-EEEECCCcEEE
Q 001123 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSY-GDL-WSGSEGGGIKI 266 (1149)
Q Consensus 191 ~~~V~~lafs~d-g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l-~GH~~~VtsVafSpd-G~L-~SGS~DgTIRV 266 (1149)
...+..++|++. +.+.|+-...+.|..++++++. ...+ ........+|++.+. +.| |+-+..+.|.+
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~---------~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~ 142 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSN---------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEV 142 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCC---------ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEE
Confidence 345788999964 6677787788999999998753 2222 222344578999975 455 67777889999
Q ss_pred EeCCC
Q 001123 267 WPWEA 271 (1149)
Q Consensus 267 Wdl~t 271 (1149)
.+++.
T Consensus 143 ~~~dG 147 (349)
T 3v64_C 143 ANLDG 147 (349)
T ss_dssp EETTS
T ss_pred EcCCC
Confidence 88864
No 303
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=95.47 E-value=2.8 Score=50.88 Aligned_cols=70 Identities=9% Similarity=0.041 Sum_probs=49.1
Q ss_pred ceEEEEEcCCCcEE-EEeCCCeEEEEeC-C----------CCeeEeeecCCccE--E-----EEEecCCEEEEeec---C
Q 001123 421 RTEALTTSIDGMIW-TGGANGLLLQWDP-N----------GNRLQDFQYLPFAV--Q-----CLCTFGSQIWVGYM---N 478 (1149)
Q Consensus 421 ~V~ava~s~Dg~la-Sgs~DgtIrlWD~-t----------G~~l~tl~gH~~~V--~-----sls~dG~~LaSGs~---D 478 (1149)
....++|++||.++ +.--|++|..||+ + .+.++++..|-.+- . ++++||++|+++.. |
T Consensus 332 gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skd 411 (595)
T 1fwx_A 332 GPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKD 411 (595)
T ss_dssp CEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTT
T ss_pred CcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcc
Confidence 45678899999755 4556999999999 5 45677777664432 2 12468999999863 4
Q ss_pred cE----------EEEEeCCCce
Q 001123 479 GI----------VQVLDLEGNL 490 (1149)
Q Consensus 479 Gt----------IrlWD~~G~~ 490 (1149)
+. -+|+|++|..
T Consensus 412 r~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 412 RFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp SSCCCCSSCCEEEEEEECSSSS
T ss_pred ccccCCCCCCCcceEEEcCCCc
Confidence 42 2899988543
No 304
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=95.26 E-value=0.091 Score=50.33 Aligned_cols=62 Identities=10% Similarity=0.167 Sum_probs=50.0
Q ss_pred eEeecCcEEecc-ceeEEEEEEecCCeeeEEEEEeecCCccccCCCCCCCCCCCCCCCCCCCeEEecCceeeCCCCeeEE
Q 001123 969 TIVSTNNIIIQN-QDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIKPDRTAEM 1047 (1149)
Q Consensus 969 ~~~~~~~i~~~~-~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wl~v~p~~g~i~p~~~~~i 1047 (1149)
.++++..+.|.. +....|+|+|.+.. ...|.+-|. -|.-.+|.|..|+|+||++++|
T Consensus 11 ~~~~p~~l~F~~~gg~~~l~L~N~t~~-~vAFKVKtT---------------------~p~~YrVrP~~G~I~Pg~~~~I 68 (116)
T 1m1s_A 11 INVDPPTGNYPATGGNSTHNITSESDS-RLAFKVKSS---------------------NNEHYRVRPVYGFVDAKGKSKL 68 (116)
T ss_dssp EEEESSEEEECTTCEEEEEEEEECSSS-EEEEEEEES---------------------CTTTEEEECSEEEECTTCEEEE
T ss_pred eecCCCeEEEecCCCEEEEEEECCCCC-eEEEEEEec---------------------CCCceEEcCCceEECCCCeEEE
Confidence 456777777763 45778999999886 888998762 1467899999999999999999
Q ss_pred EEEEe
Q 001123 1048 SVHHE 1052 (1149)
Q Consensus 1048 ~~~~~ 1052 (1149)
.|...
T Consensus 69 ~I~~q 73 (116)
T 1m1s_A 69 DINRL 73 (116)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99863
No 305
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=95.26 E-value=0.066 Score=50.81 Aligned_cols=61 Identities=10% Similarity=0.234 Sum_probs=49.0
Q ss_pred eEeecCcEEecc-ceeEEEEEEecCCeeeEEEEEeecCCccccCCCCCCCCCCCCCCCCCCCeEEecCceeeCCCCeeEE
Q 001123 969 TIVSTNNIIIQN-QDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIKPDRTAEM 1047 (1149)
Q Consensus 969 ~~~~~~~i~~~~-~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wl~v~p~~g~i~p~~~~~i 1047 (1149)
+.|++.++.|.. .....|+|+|.+.. ...|.+-|. -|.-.+|.|..|+|+||++++|
T Consensus 3 L~i~P~~l~F~~~~~~~~l~L~N~t~~-~vaFKVKtT---------------------~p~~y~VrP~~G~I~P~~~~~i 60 (109)
T 1row_A 3 LTADPPACTVPAAGVSSTHKLVNGGAE-KIVFKIKSS---------------------NNNEYRIAPVFGFVDPSGSKDV 60 (109)
T ss_dssp CEEESSSEEEETTCEEEEEEEEECSSS-CEEEEEEES---------------------CSSSEEEECSEEEECTTEEEEE
T ss_pred EEEECCEeEEeCCCCeEEEEEEcCCCC-eEEEEEEeC---------------------CCCceEEcCCceEECCCCeEEE
Confidence 356677777764 34678999999886 889998762 1467899999999999999999
Q ss_pred EEEE
Q 001123 1048 SVHH 1051 (1149)
Q Consensus 1048 ~~~~ 1051 (1149)
.|..
T Consensus 61 ~I~~ 64 (109)
T 1row_A 61 VITR 64 (109)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9886
No 306
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=95.06 E-value=1.3 Score=47.93 Aligned_cols=95 Identities=12% Similarity=0.043 Sum_probs=63.7
Q ss_pred cEE-EEeCCCeEEEEeC-CCCeeEeeecCCccEEEEEecCCEEEEeecCcEEEEEeCC-Cceeeeeec--cC---CCeEE
Q 001123 432 MIW-TGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA--HS---SPVIK 503 (1149)
Q Consensus 432 ~la-Sgs~DgtIrlWD~-tG~~l~tl~gH~~~V~sls~dG~~LaSGs~DGtIrlWD~~-G~~l~~l~g--H~---~~V~s 503 (1149)
.|+ ..-.++.+.++|. +.+.+.++..... =..++.+|++|+.+..++.|.++|.+ .+.++++.- +. ..++.
T Consensus 76 ~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~-Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe 154 (243)
T 3mbr_X 76 RLIQLTWRNHEGFVYDLATLTPRARFRYPGE-GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE 154 (243)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEEECSSC-CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred EEEEEEeeCCEEEEEECCcCcEEEEEeCCCC-ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence 444 3345789999999 7899999875432 25778899988888889999999975 566655543 22 23445
Q ss_pred EEe-cCCeEEeecCCCceeeeeccC
Q 001123 504 MAV-GAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 504 La~-Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
|.. +|+..+..-.+..|.+-|..+
T Consensus 155 Le~~~G~lyanvw~s~~I~vIDp~t 179 (243)
T 3mbr_X 155 LEWVNGELLANVWLTSRIARIDPAS 179 (243)
T ss_dssp EEEETTEEEEEETTTTEEEEECTTT
T ss_pred eEEeCCEEEEEECCCCeEEEEECCC
Confidence 554 555443333466777777554
No 307
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=94.90 E-value=12 Score=47.29 Aligned_cols=77 Identities=10% Similarity=0.102 Sum_probs=50.7
Q ss_pred CCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCC-cE-EEEECCCcEEEE
Q 001123 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-DL-WSGSEGGGIKIW 267 (1149)
Q Consensus 191 ~~~V~~lafs~-dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG-~L-~SGS~DgTIRVW 267 (1149)
...+..|+|++ ++.+.|+-...+.|+.+++.+... .......+........+|++.+.+ .| |+-+..++|.+-
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~----~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~ 498 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG----VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 498 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCC----CcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEE
Confidence 45678899998 466778888889999999876320 000112222244567789999876 45 677788899999
Q ss_pred eCCC
Q 001123 268 PWEA 271 (1149)
Q Consensus 268 dl~t 271 (1149)
+++.
T Consensus 499 ~ldG 502 (791)
T 3m0c_C 499 DTKG 502 (791)
T ss_dssp ETTS
T ss_pred eCCC
Confidence 8864
No 308
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=94.80 E-value=6.2 Score=43.57 Aligned_cols=76 Identities=12% Similarity=0.125 Sum_probs=47.9
Q ss_pred CceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCC-CcE-EEEECCCcEEEEe
Q 001123 192 SSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDL-WSGSEGGGIKIWP 268 (1149)
Q Consensus 192 ~~V~~lafs~d-g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpd-G~L-~SGS~DgTIRVWd 268 (1149)
..+..++|+++ +.+.|+-..++.|..+++++... .. .....+...-....+|++.+. +.| ++-+..++|.+.+
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~--~~--~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~ 105 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG--VS--SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD 105 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCC--Cc--ccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEe
Confidence 45678999985 56777877889999999876110 00 011112222245688999974 456 5667788999998
Q ss_pred CCC
Q 001123 269 WEA 271 (1149)
Q Consensus 269 l~t 271 (1149)
++.
T Consensus 106 ~~g 108 (316)
T 1ijq_A 106 TKG 108 (316)
T ss_dssp TTS
T ss_pred CCC
Confidence 864
No 309
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=94.73 E-value=0.18 Score=55.32 Aligned_cols=104 Identities=12% Similarity=-0.003 Sum_probs=74.8
Q ss_pred eEEEEEcCCCcEE-EEeCCCeEEEEeC-CCCeeEeeecCCc-cEEEEEecCCEEEEee-cCcEEEEEeCC-Cceeeeeec
Q 001123 422 TEALTTSIDGMIW-TGGANGLLLQWDP-NGNRLQDFQYLPF-AVQCLCTFGSQIWVGY-MNGIVQVLDLE-GNLLGGWVA 496 (1149)
Q Consensus 422 V~ava~s~Dg~la-Sgs~DgtIrlWD~-tG~~l~tl~gH~~-~V~sls~dG~~LaSGs-~DGtIrlWD~~-G~~l~~l~g 496 (1149)
...+.++ ++.|+ +.+.+|.|+..|+ +|+.++++ -... ---.++++|++|+... .++.+.++|.+ ++++.++..
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~ 134 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY 134 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence 3455565 35654 7777889999999 89888877 3222 1234778887777664 68999999976 788888774
Q ss_pred cCCCeEEEEecCCeEEeecCCCceeeeeccCC
Q 001123 497 HSSPVIKMAVGAGYIFTLANHGGIRGWNVTSP 528 (1149)
Q Consensus 497 H~~~V~sLa~Dg~~LaSgS~DgtIRlWdl~sp 528 (1149)
- ..=+.+++|++.|+....++.|.++|..+.
T Consensus 135 ~-~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~ 165 (268)
T 3nok_A 135 S-GEGWGLCYWNGKLVRSDGGTMLTFHEPDGF 165 (268)
T ss_dssp S-SCCCCEEEETTEEEEECSSSEEEEECTTTC
T ss_pred C-CceeEEecCCCEEEEECCCCEEEEEcCCCC
Confidence 2 333678889998887767889999997654
No 310
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=94.71 E-value=7.9 Score=44.42 Aligned_cols=76 Identities=12% Similarity=0.152 Sum_probs=49.8
Q ss_pred CCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeec-CCCCEEEEEEeC-CCcE-EEEECCCcEEE
Q 001123 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA-HRGPVLSLCISS-YGDL-WSGSEGGGIKI 266 (1149)
Q Consensus 191 ~~~V~~lafs~d-g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~G-H~~~VtsVafSp-dG~L-~SGS~DgTIRV 266 (1149)
...+..|+|++. +.+.|+-...+.|+.+++.+... ......+.+ ......+|++.+ .+.| |+-+..+.|.+
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~-----~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~ 185 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-----VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV 185 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCC-----CCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEE
Confidence 456788999975 56777877889999999876210 001222222 345688999998 4555 67777888988
Q ss_pred EeCCC
Q 001123 267 WPWEA 271 (1149)
Q Consensus 267 Wdl~t 271 (1149)
.+++.
T Consensus 186 ~~~~g 190 (400)
T 3p5b_L 186 ADTKG 190 (400)
T ss_dssp ECTTT
T ss_pred EeCCC
Confidence 88764
No 311
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=94.54 E-value=0.71 Score=54.33 Aligned_cols=90 Identities=11% Similarity=0.169 Sum_probs=55.6
Q ss_pred CCCeEEEEeC-CCCeeEeeecC-C-ccEEEE----EecCCEEEEee------cCcEEEEEeCC-Cce--eeee--ecc--
Q 001123 438 ANGLLLQWDP-NGNRLQDFQYL-P-FAVQCL----CTFGSQIWVGY------MNGIVQVLDLE-GNL--LGGW--VAH-- 497 (1149)
Q Consensus 438 ~DgtIrlWD~-tG~~l~tl~gH-~-~~V~sl----s~dG~~LaSGs------~DGtIrlWD~~-G~~--l~~l--~gH-- 497 (1149)
.+.+|.+||+ +++.++++.-. . ....-| .++|+++++++ .+++|.+|..+ |+. ++.. ...
T Consensus 226 ~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v 305 (462)
T 2ece_A 226 YGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPL 305 (462)
T ss_dssp SCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEEC
T ss_pred cCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccc
Confidence 3679999999 67778887653 1 122223 44799999888 46789887643 321 1110 000
Q ss_pred --------------CCCeEE--EEecCCeEEeec-CCCceeeeeccC
Q 001123 498 --------------SSPVIK--MAVGAGYIFTLA-NHGGIRGWNVTS 527 (1149)
Q Consensus 498 --------------~~~V~s--La~Dg~~LaSgS-~DgtIRlWdl~s 527 (1149)
...... +++||++|+.+. .+++|+++|+..
T Consensus 306 ~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 306 EGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp CSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred cccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 012233 457999888554 478999999863
No 312
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=94.53 E-value=0.1 Score=50.77 Aligned_cols=62 Identities=19% Similarity=0.403 Sum_probs=49.7
Q ss_pred eEeecC-cEEec----cceeEEEEEEecCCeeeEEEEEeecCCccccCCCCCCCCCCCCCCCCCCCeEEecCceeeCCCC
Q 001123 969 TIVSTN-NIIIQ----NQDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIKPDR 1043 (1149)
Q Consensus 969 ~~~~~~-~i~~~----~~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wl~v~p~~g~i~p~~ 1043 (1149)
+.+++. .|.|. .+.+..|+|+|.+.. ...|.+-+. .|.-+.|.|..|+|.||+
T Consensus 11 L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~-~vaFKVKTT---------------------~p~~y~VrP~~G~i~P~~ 68 (128)
T 1z9l_A 11 LVLDPPSDLKFKGPFTDVVTTNLKLQNPSDR-KVCFKVKTT---------------------APRRYCVRPNSGVIDPGS 68 (128)
T ss_dssp SEEESSSEEEEESCCSSCEEEEEEEECCSSS-CEEEEEEES---------------------CGGGEEEESCEEEECTTC
T ss_pred EEECCCCeEEEcCCCCceEEEEEEEECCCCC-eEEEEEECC---------------------CCCceEEeCCCcEECCCC
Confidence 567774 77774 345778999999986 889998751 245679999999999999
Q ss_pred eeEEEEEEe
Q 001123 1044 TAEMSVHHE 1052 (1149)
Q Consensus 1044 ~~~i~~~~~ 1052 (1149)
+++|.|.+.
T Consensus 69 s~~v~V~~~ 77 (128)
T 1z9l_A 69 IVTVSVMLQ 77 (128)
T ss_dssp EEEEEEEEC
T ss_pred eEEEEEEEC
Confidence 999999974
No 313
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=94.50 E-value=0.18 Score=54.97 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=25.8
Q ss_pred EEEEEEEeCCCCCCch-----hhcccccCCCCCcceEEEEeecccc
Q 001123 554 ILAGTWNVGQGRASQD-----ALISWLGSAASDVGIVVVGLQEVEM 594 (1149)
Q Consensus 554 i~v~TWNv~~~~~~~~-----~l~~wl~~~~~~~Di~viGlQEi~~ 594 (1149)
+.++|||+-++....+ .+..||.. ..++|| +.|||++-
T Consensus 5 ~kv~TwNi~g~~~~~~~k~~~~i~~~i~~-~~~~DI--laLQEa~~ 47 (261)
T 1sr4_B 5 FKVATWNLQGSSAVNESKWNINVRQLLSG-EQGADI--LMVQEAGS 47 (261)
T ss_dssp SCEEEEECCCCSSSSHHHHHHHHHHHHCS-TTCCSE--EEEESCCS
T ss_pred cEEEEEEcCCCCCCChhhhhhHHHHHHcC-CCCCCE--EEEecCCC
Confidence 3489999998655432 36677763 235776 56899963
No 314
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=94.38 E-value=7 Score=45.38 Aligned_cols=58 Identities=9% Similarity=0.055 Sum_probs=41.4
Q ss_pred ceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-EEEEE
Q 001123 193 SVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS 259 (1149)
Q Consensus 193 ~V~~lafs~-dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L~SGS 259 (1149)
....|+++| ++..|+.+...+.|+.+|++++. +..+.........|+|+++|+ |+.+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~---------v~~~~~~~~~P~~ia~d~~G~~lyvad 197 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY---------VSTVYSGLSKVRTICWTHEADSMIITN 197 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE---------EEEEECCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE---------EEEEecCCCCcceEEEeCCCCEEEEEe
Confidence 456789998 46667666666899999998743 344444455688999999998 65443
No 315
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.30 E-value=0.13 Score=51.36 Aligned_cols=63 Identities=19% Similarity=0.397 Sum_probs=50.5
Q ss_pred eEeecC-cEEec----cceeEEEEEEecCCeeeEEEEEeecCCccccCCCCCCCCCCCCCCCCCCCeEEecCceeeCCCC
Q 001123 969 TIVSTN-NIIIQ----NQDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIKPDR 1043 (1149)
Q Consensus 969 ~~~~~~-~i~~~----~~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wl~v~p~~g~i~p~~ 1043 (1149)
+.|++. .|.|. .+.+..|+|+|.+.. ...|.|-+. .|.-+.|.|..|+|.||+
T Consensus 15 L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~-~VaFKVKTT---------------------~p~~y~VrP~~GiI~P~~ 72 (147)
T 2cri_A 15 LVLDPPSDLKFKGPFTDVVTTNLKLQNPSDR-KVCFKVKTT---------------------APRRYCVRPNSGIIDPGS 72 (147)
T ss_dssp SEEESSSEEEEECCSSSCCCEEEEEECCSSS-CEEEEEEES---------------------CTTSEEEESSEEECCTTC
T ss_pred EEECCCCeEEEeCCCCceEEEEEEEECCCCC-cEEEEEECC---------------------CCccEEEcCCCcEECCCC
Confidence 567775 77774 345678999999986 889998751 256789999999999999
Q ss_pred eeEEEEEEee
Q 001123 1044 TAEMSVHHED 1053 (1149)
Q Consensus 1044 ~~~i~~~~~~ 1053 (1149)
+++|.|.+..
T Consensus 73 s~~v~V~l~~ 82 (147)
T 2cri_A 73 IVTVSVMLQP 82 (147)
T ss_dssp EEEEEEEECC
T ss_pred eEEEEEEECC
Confidence 9999999743
No 316
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=93.90 E-value=0.13 Score=51.64 Aligned_cols=63 Identities=13% Similarity=0.263 Sum_probs=49.5
Q ss_pred eEeecC-cEEecc----ceeEEEEEEecCCeeeEEEEEeecCCccccCCCCCCCCCCCCCCCCCCCeEEecCceeeCCCC
Q 001123 969 TIVSTN-NIIIQN----QDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIKPDR 1043 (1149)
Q Consensus 969 ~~~~~~-~i~~~~----~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wl~v~p~~g~i~p~~ 1043 (1149)
+.|++. .|.|.- +.+..|+|+|++.. ...|.|-+. -|.-..|.|..|+|.||+
T Consensus 19 L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~-~VaFKVKTT---------------------~p~~y~VrP~~GiI~P~~ 76 (152)
T 1wic_A 19 LHISPAEELYFGSIESGEKKTLIVLTNVTKN-IVAFKVRTT---------------------APEKYRVKPSNSSCDPGA 76 (152)
T ss_dssp BCBBSSSCBCCCCSSSSCCCEEEEEEBCSSS-CEEEEEEES---------------------CTTTEEEESSEEEECTTC
T ss_pred EEECCCCeEEEeCCCCceEEEEEEEEcCCCC-eEEEEEECC---------------------CCCceeecCCCcEECCCC
Confidence 456666 666652 33678999999986 889998751 246679999999999999
Q ss_pred eeEEEEEEee
Q 001123 1044 TAEMSVHHED 1053 (1149)
Q Consensus 1044 ~~~i~~~~~~ 1053 (1149)
+++|.|.+..
T Consensus 77 s~~V~V~lq~ 86 (152)
T 1wic_A 77 SIDIIVSPHG 86 (152)
T ss_dssp EEEEEEEECS
T ss_pred eEEEEEEecC
Confidence 9999999743
No 317
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=93.35 E-value=13 Score=42.17 Aligned_cols=103 Identities=15% Similarity=0.092 Sum_probs=60.2
Q ss_pred eEEEEEcC-CCcEE-EEeCC-CeEEEEeCCCCeeEeeec-CCccEEEEEe--cCCEEEEee-cCcEEEEEeCCCceeeee
Q 001123 422 TEALTTSI-DGMIW-TGGAN-GLLLQWDPNGNRLQDFQY-LPFAVQCLCT--FGSQIWVGY-MNGIVQVLDLEGNLLGGW 494 (1149)
Q Consensus 422 V~ava~s~-Dg~la-Sgs~D-gtIrlWD~tG~~l~tl~g-H~~~V~sls~--dG~~LaSGs-~DGtIrlWD~~G~~l~~l 494 (1149)
...+++.| +|.|+ +-... +.|...+++|.....+.. .-..-+.|++ ++++|+.+. ..+.|+.+|.+|.....+
T Consensus 204 P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~ 283 (386)
T 3v65_B 204 PRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 283 (386)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEE
T ss_pred CcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEE
Confidence 34566665 45554 43344 678888888765555432 2334566666 466666554 567899999887543333
Q ss_pred -eccCCCeEEEEecC-CeEEeecCCCceeeee
Q 001123 495 -VAHSSPVIKMAVGA-GYIFTLANHGGIRGWN 524 (1149)
Q Consensus 495 -~gH~~~V~sLa~Dg-~~LaSgS~DgtIRlWd 524 (1149)
......-.+|+.++ ...++-...+.|...+
T Consensus 284 ~~~~~~~P~giav~~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 284 ISQGLPHPFAITVFEDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp ECSSCSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred EECCCCCceEEEEECCEEEEeeCCCCeEEEEE
Confidence 22334456677544 4445555566676665
No 318
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=93.30 E-value=11 Score=40.98 Aligned_cols=110 Identities=9% Similarity=0.022 Sum_probs=62.2
Q ss_pred eeEEEEEee-CCeEEEe--CCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEE
Q 001123 133 CFLRTIVCT-EEQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (1149)
Q Consensus 133 ~~l~~l~~~-~~~l~ag--~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSG 209 (1149)
.....++.+ ++.||.. .++.|..||.++.. ... ......+.+++++++|+++++.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~~---------------------~~~~~~p~gia~~~dG~l~vad 89 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QIH---------------------ATVEGKVSGLAFTSNGDLVATG 89 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEE---------------------EECSSEEEEEEECTTSCEEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EEE---------------------EeCCCCceeEEEcCCCcEEEEe
Confidence 455566665 4456653 46678888865321 100 0102357789999999977776
Q ss_pred eCCC--eEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcE-EEEECCCcEEEEeCCC
Q 001123 210 HRDG--RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWPWEA 271 (1149)
Q Consensus 210 S~DG--tIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L-~SGS~DgTIRVWdl~t 271 (1149)
.... .|..++..++.. .....+ .....-..+++.+++.+ ++-+.++.|.++|..+
T Consensus 90 ~~~~~~~v~~~d~~~g~~------~~~~~~-~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~ 147 (306)
T 2p4o_A 90 WNADSIPVVSLVKSDGTV------ETLLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ 147 (306)
T ss_dssp ECTTSCEEEEEECTTSCE------EEEEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTT
T ss_pred ccCCcceEEEEcCCCCeE------EEEEeC-CCccccCcccccCCCcEEEEECCCCeEEEEeCCC
Confidence 5433 355566666541 111111 12233466677776664 4555678887777754
No 319
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=93.28 E-value=7.4 Score=43.16 Aligned_cols=64 Identities=17% Similarity=0.142 Sum_probs=41.5
Q ss_pred eEEEEEcCCCcEEEEeCCCeEEEEeCC-CCeeEeee---cCCccEEEEEe-cCCEEEEeecCcEEEEEeC
Q 001123 422 TEALTTSIDGMIWTGGANGLLLQWDPN-GNRLQDFQ---YLPFAVQCLCT-FGSQIWVGYMNGIVQVLDL 486 (1149)
Q Consensus 422 V~ava~s~Dg~laSgs~DgtIrlWD~t-G~~l~tl~---gH~~~V~sls~-dG~~LaSGs~DGtIrlWD~ 486 (1149)
+.++++.+++.++.++.++.| ++..+ |+-=..+. .+...++++.+ ++..+++++.+|+|.-++-
T Consensus 252 ~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 252 FLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp EEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred eEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence 456667777787777778877 56663 54333333 23345677766 4666777788998877763
No 320
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=92.88 E-value=16 Score=41.78 Aligned_cols=106 Identities=10% Similarity=0.013 Sum_probs=64.4
Q ss_pred eEEEEEcC-CCcEEEEe-C-CCeEEEEeCCCCeeEeeec-CCccEEEEEec--CCEEEEee-cCcEEEEEeCCCceeeee
Q 001123 422 TEALTTSI-DGMIWTGG-A-NGLLLQWDPNGNRLQDFQY-LPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLGGW 494 (1149)
Q Consensus 422 V~ava~s~-Dg~laSgs-~-DgtIrlWD~tG~~l~tl~g-H~~~V~sls~d--G~~LaSGs-~DGtIrlWD~~G~~l~~l 494 (1149)
...+++.| +|.|+... . .+.|...+++|.....+.. .-...+.|++| +++|+.+. ....|+..|.+|.....+
T Consensus 204 P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~ 283 (400)
T 3p5b_L 204 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 283 (400)
T ss_dssp EEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEE
T ss_pred cceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEE
Confidence 34556665 45554333 2 3678888888865555432 22456677765 67777665 467999999987654444
Q ss_pred ec---cCCCeEEEEecCC-eEEeecCCCceeeeeccC
Q 001123 495 VA---HSSPVIKMAVGAG-YIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 495 ~g---H~~~V~sLa~Dg~-~LaSgS~DgtIRlWdl~s 527 (1149)
.. ....-.+|+.++. ..++-...+.|..+|..+
T Consensus 284 ~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~ 320 (400)
T 3p5b_L 284 LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT 320 (400)
T ss_dssp EECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSS
T ss_pred EeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCC
Confidence 32 2344567776554 445666667777777443
No 321
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=92.35 E-value=20 Score=41.56 Aligned_cols=59 Identities=10% Similarity=0.027 Sum_probs=41.8
Q ss_pred ceEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCcEEEEEC
Q 001123 193 SVMCMVGDEA--SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSE 260 (1149)
Q Consensus 193 ~V~~lafs~d--g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~L~SGS~ 260 (1149)
....|+++++ +..|+-+...+.|+.+|+.++. +..+.+......+|+|+++|.|+.+..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~---------v~~~~~~~~~P~giavd~dG~lyVad~ 200 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY---------VDIKTTNIGQCADVNFTLNGDMVVVDD 200 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE---------EEEECCCCSCEEEEEECTTCCEEEEEC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCE---------EEEeecCCCCccEEEECCCCCEEEEcC
Confidence 4568999984 4455555544899999997654 455555556689999999999765443
No 322
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=92.18 E-value=0.59 Score=50.77 Aligned_cols=37 Identities=24% Similarity=0.332 Sum_probs=27.2
Q ss_pred CcceeEEEEEEeceEEEEeeecccccchhHHHHHHHHHHHHHh
Q 001123 676 NKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRT 718 (1149)
Q Consensus 676 NKGaV~ir~~~~~t~lcFVn~HLaA~~~~~~~Rn~d~~~I~~~ 718 (1149)
....++||+ ..+.|.|.|+.|.-+ ..|.+..+.|.+.
T Consensus 130 ~Rp~lgiri----~~~~ff~tHa~a~~g--~da~a~v~~I~~~ 166 (262)
T 2f1n_A 130 GRPLLGIRI----GNDAFFTAHAIAMRN--NDAPALVEEVYNF 166 (262)
T ss_dssp CCCEEEEEE----TTEEEEEEECCSSSS--CSHHHHHHHHHHH
T ss_pred CCceEEEEE----CCEEEEEEEecCCCC--ccHHHHHHHHHHH
Confidence 788888887 358999999999833 2256667677664
No 323
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=92.01 E-value=18 Score=40.39 Aligned_cols=103 Identities=15% Similarity=0.089 Sum_probs=59.1
Q ss_pred eEEEEEcC-CCcEE-EEeCC-CeEEEEeCCCCeeEeeec-CCccEEEEEec--CCEEEEee-cCcEEEEEeCCCceeeee
Q 001123 422 TEALTTSI-DGMIW-TGGAN-GLLLQWDPNGNRLQDFQY-LPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLGGW 494 (1149)
Q Consensus 422 V~ava~s~-Dg~la-Sgs~D-gtIrlWD~tG~~l~tl~g-H~~~V~sls~d--G~~LaSGs-~DGtIrlWD~~G~~l~~l 494 (1149)
...+++.| +|.|+ +-..+ +.|...+++|.....+.. .-..-+.|++| +++|+.+. ..+.|+.+|.+|.....+
T Consensus 161 P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~ 240 (349)
T 3v64_C 161 PRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 240 (349)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEE
Confidence 34566665 45554 44444 778888888765555432 22345667664 66666655 457899999887543332
Q ss_pred -eccCCCeEEEEecCCeE-EeecCCCceeeee
Q 001123 495 -VAHSSPVIKMAVGAGYI-FTLANHGGIRGWN 524 (1149)
Q Consensus 495 -~gH~~~V~sLa~Dg~~L-aSgS~DgtIRlWd 524 (1149)
......-.+|+.++..| ++-...+.|...+
T Consensus 241 ~~~~~~~P~giav~~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 241 ISQGLPHPFAITVFEDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp ECSSCSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred EeCCCCCceEEEEECCEEEEecCCCCeEEEEE
Confidence 23334456666544444 4444455665555
No 324
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=91.40 E-value=19 Score=39.45 Aligned_cols=105 Identities=10% Similarity=0.003 Sum_probs=62.6
Q ss_pred eEEEEEcC-CCcEEEEeC-C-CeEEEEeCCCCeeEeeec-CCccEEEEEec--CCEEEEee-cCcEEEEEeCCCceeeee
Q 001123 422 TEALTTSI-DGMIWTGGA-N-GLLLQWDPNGNRLQDFQY-LPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLGGW 494 (1149)
Q Consensus 422 V~ava~s~-Dg~laSgs~-D-gtIrlWD~tG~~l~tl~g-H~~~V~sls~d--G~~LaSGs-~DGtIrlWD~~G~~l~~l 494 (1149)
...+++.| +|.|+.+.. . +.|...+++|...+.+.. .-..-+.|++| +++|+.+. ..+.|+..|.+|.....+
T Consensus 122 P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~ 201 (316)
T 1ijq_A 122 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 201 (316)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEE
Confidence 34556665 455543333 3 678888888866555532 22345667664 67776665 457999999987544444
Q ss_pred ec---cCCCeEEEEecCCeE-EeecCCCceeeeecc
Q 001123 495 VA---HSSPVIKMAVGAGYI-FTLANHGGIRGWNVT 526 (1149)
Q Consensus 495 ~g---H~~~V~sLa~Dg~~L-aSgS~DgtIRlWdl~ 526 (1149)
.. ....-.+|+.++..| ++-...+.|...+..
T Consensus 202 ~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 202 LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRL 237 (316)
T ss_dssp EECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred eecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCC
Confidence 32 223456777654444 455556677777643
No 325
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=90.26 E-value=40 Score=41.13 Aligned_cols=72 Identities=14% Similarity=0.156 Sum_probs=50.5
Q ss_pred CCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeec-CCCCEEEEEEeCCC-cE-EEEECCCcEEE
Q 001123 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA-HRGPVLSLCISSYG-DL-WSGSEGGGIKI 266 (1149)
Q Consensus 191 ~~~V~~lafs~d-g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~G-H~~~VtsVafSpdG-~L-~SGS~DgTIRV 266 (1149)
...+..|+|+++ +.+.|+-..++.|..++++++. ...+.. -.....+|++.+.+ +| |+-+..+.|.+
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~---------~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v 106 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA---------LEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEV 106 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC---------cEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEE
Confidence 346778999985 5667787889999999998643 222221 22457789998765 45 67777788888
Q ss_pred EeCCC
Q 001123 267 WPWEA 271 (1149)
Q Consensus 267 Wdl~t 271 (1149)
-+++.
T Consensus 107 ~~~dG 111 (628)
T 4a0p_A 107 SKLDG 111 (628)
T ss_dssp EETTS
T ss_pred EecCC
Confidence 88754
No 326
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=89.37 E-value=54 Score=41.27 Aligned_cols=103 Identities=12% Similarity=0.027 Sum_probs=61.3
Q ss_pred eEEEEEcCC-CcEEEEe-CC-CeEEEEeCCCCeeEeeec-CCccEEEEEec--CCEEEEee-cCcEEEEEeCCCceeeee
Q 001123 422 TEALTTSID-GMIWTGG-AN-GLLLQWDPNGNRLQDFQY-LPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLGGW 494 (1149)
Q Consensus 422 V~ava~s~D-g~laSgs-~D-gtIrlWD~tG~~l~tl~g-H~~~V~sls~d--G~~LaSGs-~DGtIrlWD~~G~~l~~l 494 (1149)
...|++.|. |.|+.+. .+ +.|...+++|..+.++.. .-...+.|++| +++|+.+. ....|+..|++|..+..+
T Consensus 516 P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v 595 (791)
T 3m0c_C 516 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 595 (791)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEE
Confidence 445666664 5654333 23 678888888876665543 22467777765 66676665 457899999987654444
Q ss_pred ec---cCCCeEEEEecCCeEE-eecCCCceeeee
Q 001123 495 VA---HSSPVIKMAVGAGYIF-TLANHGGIRGWN 524 (1149)
Q Consensus 495 ~g---H~~~V~sLa~Dg~~La-SgS~DgtIRlWd 524 (1149)
.. ....-.+|+.++.+|+ +-...+.|..-+
T Consensus 596 ~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 596 LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSAN 629 (791)
T ss_dssp EECTTTTSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred ecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEe
Confidence 32 2234567776555554 333445554444
No 327
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=89.17 E-value=1 Score=54.63 Aligned_cols=78 Identities=8% Similarity=0.034 Sum_probs=47.8
Q ss_pred CEEEEEEeCCCc--EEEEECCCcEEEEeCCCcceee--ecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEE
Q 001123 243 PVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKAL--SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL 318 (1149)
Q Consensus 243 ~VtsVafSpdG~--L~SGS~DgTIRVWdl~t~~~~~--~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~la 318 (1149)
...+|.|||||+ ++++-.+.+|-++|+++.+... .+.+...... .. .....-..++
T Consensus 278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~-------------~v-------~vG~gP~h~a 337 (595)
T 1fwx_A 278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA-------------EP-------ELGLGPLHTA 337 (595)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE-------------CC-------BCCSCEEEEE
T ss_pred CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE-------------Ec-------CCCCCcceEE
Confidence 345788999998 4677789999999997643111 0111000000 00 0112356778
Q ss_pred EcCCCCEEEEec--CCceEEEEcCC
Q 001123 319 SDHSRAKVWSAG--FLSFALWDART 341 (1149)
Q Consensus 319 s~~~~~~v~Sas--d~tIrLWD~~T 341 (1149)
++++| .++... +.+|..||+.+
T Consensus 338 F~~dG-~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 338 FDGRG-NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp ECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred ECCCC-eEEEEEecCCcEEEEEhhH
Confidence 88888 776654 57799999876
No 328
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=87.97 E-value=1.3 Score=47.03 Aligned_cols=60 Identities=13% Similarity=0.213 Sum_probs=46.7
Q ss_pred EeecCcEEec-----cceeEEEEEEecCCeeeEEEEEeecCCccccCCCCCCCCCCCCCCCCCCCeEEecCceeeCCCCe
Q 001123 970 IVSTNNIIIQ-----NQDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIKPDRT 1044 (1149)
Q Consensus 970 ~~~~~~i~~~-----~~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wl~v~p~~g~i~p~~~ 1044 (1149)
.++.+.|+|+ +.....++++|+|.. +..+.++. .|.|+.+.+..+.|.||++
T Consensus 4 ~~~~~~idFg~v~~g~~~~~~~~i~N~g~~-pl~i~~~~----------------------~p~~~~~~~~~~~I~PG~~ 60 (220)
T 2qsv_A 4 QVSNARLLFPISMPEDEGVVRLVVNNTDES-DLQVAVVS----------------------LPSFVSLDDRAFRLQAREP 60 (220)
T ss_dssp EESCSEEECCSBCTTCCCEEEEEEEECSSS-CEEEEEEE----------------------CCTTEECSCCEEEECSSSC
T ss_pred EEecCeeEcccccCCCcceEEEEEEeCCCC-ceEEEecc----------------------CCCceEeeeCcceeCCCCc
Confidence 3455555555 456778999999997 77777651 2678999999999999999
Q ss_pred eEEEEEEe
Q 001123 1045 AEMSVHHE 1052 (1149)
Q Consensus 1045 ~~i~~~~~ 1052 (1149)
.+|+++..
T Consensus 61 g~I~vt~~ 68 (220)
T 2qsv_A 61 RELNLSLA 68 (220)
T ss_dssp EEEEEEEC
T ss_pred eEEEEEEc
Confidence 99999974
No 329
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=87.75 E-value=37 Score=37.46 Aligned_cols=105 Identities=10% Similarity=0.005 Sum_probs=58.9
Q ss_pred EEEEEcC-CCcEEEEe--CCCeEEEEeCCCCeeEeeec-CCccEEEEEec--CCEEEEee-cCcEEEEEeCCCceeeeee
Q 001123 423 EALTTSI-DGMIWTGG--ANGLLLQWDPNGNRLQDFQY-LPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLGGWV 495 (1149)
Q Consensus 423 ~ava~s~-Dg~laSgs--~DgtIrlWD~tG~~l~tl~g-H~~~V~sls~d--G~~LaSGs-~DGtIrlWD~~G~~l~~l~ 495 (1149)
..+++.| +|.|+.+. ..+.|...+++|.....+.. .-..-+.|++| +++|+.+. ..+.|+.+|.+|.....+.
T Consensus 125 ~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~ 204 (318)
T 3sov_A 125 RAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV 204 (318)
T ss_dssp EEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred cEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEe
Confidence 3445554 34554333 24677777777755444422 22344566654 66666655 4678999998865443332
Q ss_pred -ccCCCeEEEEecCC-eEEeecCCCceeeeeccC
Q 001123 496 -AHSSPVIKMAVGAG-YIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 496 -gH~~~V~sLa~Dg~-~LaSgS~DgtIRlWdl~s 527 (1149)
+....-.+|+.++. ..++-...+.|...+..+
T Consensus 205 ~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 205 KGSLPHPFALTLFEDILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp CSCCSCEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred cCCCCCceEEEEeCCEEEEEecCCCeEEEEECCC
Confidence 23445566775544 444555566777776543
No 330
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=83.65 E-value=8.7 Score=47.66 Aligned_cols=76 Identities=13% Similarity=0.171 Sum_probs=47.0
Q ss_pred CceEEEEEcCC-CcEE-EEeCCCeEEEEeCCCCeeEeeecC---CccEEEEEecCCEE-EEeecCcEEEEEeC-CCceee
Q 001123 420 RRTEALTTSID-GMIW-TGGANGLLLQWDPNGNRLQDFQYL---PFAVQCLCTFGSQI-WVGYMNGIVQVLDL-EGNLLG 492 (1149)
Q Consensus 420 ~~V~ava~s~D-g~la-Sgs~DgtIrlWD~tG~~l~tl~gH---~~~V~sls~dG~~L-aSGs~DGtIrlWD~-~G~~l~ 492 (1149)
.....|+++++ +.|+ +-+..+.|...|++|..++++... -.....|++++.+| ++....+.|..+|. +|+.+.
T Consensus 540 ~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 540 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVN 619 (699)
T ss_dssp SSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEE
T ss_pred CCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceE
Confidence 34567889876 5565 444567899999977554444321 12233556665544 45556688999985 577666
Q ss_pred eee
Q 001123 493 GWV 495 (1149)
Q Consensus 493 ~l~ 495 (1149)
.+.
T Consensus 620 ~i~ 622 (699)
T 1n7d_A 620 LLA 622 (699)
T ss_dssp CCC
T ss_pred Eee
Confidence 554
No 331
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=82.21 E-value=2 Score=53.45 Aligned_cols=76 Identities=13% Similarity=0.146 Sum_probs=44.3
Q ss_pred ceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCC-CcE-EEEECCCcEEEEeC
Q 001123 193 SVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDL-WSGSEGGGIKIWPW 269 (1149)
Q Consensus 193 ~V~~lafs~dg-~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpd-G~L-~SGS~DgTIRVWdl 269 (1149)
.+..|+|++.+ .+.|+-...+.|+.+++.+... .. .....+........+|++.+. +.| |+-...++|.+.++
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~--~~--~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~ 482 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG--VS--SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 482 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC---C--CCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBS
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCC--Cc--ceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEec
Confidence 45578899864 5566666778999999875110 00 001111111223456888854 454 56666788999988
Q ss_pred CCc
Q 001123 270 EAI 272 (1149)
Q Consensus 270 ~t~ 272 (1149)
.+.
T Consensus 483 dg~ 485 (699)
T 1n7d_A 483 KGV 485 (699)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
No 332
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=81.16 E-value=3.8 Score=51.27 Aligned_cols=107 Identities=2% Similarity=-0.156 Sum_probs=61.7
Q ss_pred ceEEEEEc-CCCc-EE-EEeCC----CeEEEEeC-CC-CeeE-eeecCCccEEEEEecCCEEEEeecC-----cEEEEEe
Q 001123 421 RTEALTTS-IDGM-IW-TGGAN----GLLLQWDP-NG-NRLQ-DFQYLPFAVQCLCTFGSQIWVGYMN-----GIVQVLD 485 (1149)
Q Consensus 421 ~V~ava~s-~Dg~-la-Sgs~D----gtIrlWD~-tG-~~l~-tl~gH~~~V~sls~dG~~LaSGs~D-----GtIrlWD 485 (1149)
.+....+| |||+ || +.+.+ .+|+++|+ +| +.+. .+.... .-.+.++||+.|+....| ..|++++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~-~~~~WspDg~~l~y~~~d~~~~~~~v~~~~ 253 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTN-GEIVWGPDHTSLFYVTKDETLRENKVWRHV 253 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEEC-SCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCce-eeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence 46678899 9997 54 33333 36999999 66 5332 122110 011335689888877765 3688888
Q ss_pred CCC-ce--eeeee-ccCCCeEEEE--ecCCeEEeecC---CCceeeeeccCC
Q 001123 486 LEG-NL--LGGWV-AHSSPVIKMA--VGAGYIFTLAN---HGGIRGWNVTSP 528 (1149)
Q Consensus 486 ~~G-~~--l~~l~-gH~~~V~sLa--~Dg~~LaSgS~---DgtIRlWdl~sp 528 (1149)
+.+ +. ...+. .+.....++. +||++|+-.+. ...|.++|+..+
T Consensus 254 lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 254 MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 863 21 22222 2233444443 79998875442 345777787654
No 333
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=79.53 E-value=1.2e+02 Score=36.84 Aligned_cols=74 Identities=15% Similarity=0.088 Sum_probs=49.2
Q ss_pred CCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCC-cE-EEEECCCcEEEE
Q 001123 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-DL-WSGSEGGGIKIW 267 (1149)
Q Consensus 191 ~~~V~~lafs~d-g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG-~L-~SGS~DgTIRVW 267 (1149)
...+..|+|++. +.+.||=...+.|..+++++.. .....+..--....+|++.+.+ .| |+-+..+.|.+-
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~-------~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~ 111 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE-------SVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVS 111 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC-------ceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEE
Confidence 345778999985 5666777778999999987642 0111222223578899999855 45 577778999999
Q ss_pred eCCC
Q 001123 268 PWEA 271 (1149)
Q Consensus 268 dl~t 271 (1149)
+++.
T Consensus 112 ~~dG 115 (619)
T 3s94_A 112 NLDG 115 (619)
T ss_dssp ETTS
T ss_pred ECCC
Confidence 8865
No 334
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=78.12 E-value=1.3e+02 Score=36.54 Aligned_cols=293 Identities=12% Similarity=0.059 Sum_probs=143.1
Q ss_pred ceEEEEEcCC-CCEEEEEe-CCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-E-EEEECCCcEEEEe
Q 001123 193 SVMCMVGDEA-SGVVWSGH-RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWP 268 (1149)
Q Consensus 193 ~V~~lafs~d-g~~LaSGS-~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~-L-~SGS~DgTIRVWd 268 (1149)
....|+++|. |.+.||-. ..+.|...++++.. ...+...-..-++|++++++. | |+=+..+.|...+
T Consensus 124 ~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~---------~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d 194 (628)
T 4a0p_A 124 SPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE---------RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSN 194 (628)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS---------CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc---------eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEc
Confidence 4578999985 56666642 35788888887643 233333445678999999754 5 5666778898888
Q ss_pred CCCcceeeecCCCcceeeEEEeeeccccccccccccceeeeecCCeEEEEEcCCCCEEEEec-CCceEEEEcCCccEEEE
Q 001123 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (1149)
Q Consensus 269 l~t~~~~~~l~~~~~~~~a~~~~~~~~~l~~~~~~~g~~~~~~~dv~~las~~~~~~v~Sas-d~tIrLWD~~TG~~L~~ 347 (1149)
++...... +... + .....++... +...|+-. .+.|..-|..+|+...+
T Consensus 195 ~dG~~~~v-~~~~---------------l--------------~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~ 243 (628)
T 4a0p_A 195 MLGLNREV-IADD---------------L--------------PHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTI 243 (628)
T ss_dssp TTSCSCEE-EEEC---------------C--------------SCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred CCCCceEE-eecc---------------C--------------CCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEE
Confidence 86532211 1000 0 1111233333 33444432 35677777777765555
Q ss_pred EecCCceeeEE-eeccCCC-cccccc----ce--eeEEec-CCCCccc-eee-------eeeccccceEeecCCcEEEEe
Q 001123 348 FNIDGQIENRV-DMSLLPD-FAMEDE----FK--TKIVTS-SKKDKAQ-SSF-------GFFQRSRNAIMGAADAVRRVA 410 (1149)
Q Consensus 348 l~~~g~~~~~v-~~S~~~~-~~~~~~----~~--~~~~s~-~~k~~~~-~si-------~f~~~~~~~i~G~~d~v~rv~ 410 (1149)
+.........+ .+.+... ..-+.. .+ ..+... .+..+.- ... .+.+....++......++++.
T Consensus 244 l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~ 323 (628)
T 4a0p_A 244 IQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMV 323 (628)
T ss_dssp EECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEEC
T ss_pred EecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccceEEEEe
Confidence 43221110011 1111000 000000 00 000011 0000000 000 111111223333334444443
Q ss_pred ecc------cc-cCCCCceEEEEEcC-CCcEE-EEeCCCeEEEEeCCCCeeEe-eec------CCccEEEEEec--CCEE
Q 001123 411 AKG------GF-GDDNRRTEALTTSI-DGMIW-TGGANGLLLQWDPNGNRLQD-FQY------LPFAVQCLCTF--GSQI 472 (1149)
Q Consensus 411 ~~g------~~-~~~~~~V~ava~s~-Dg~la-Sgs~DgtIrlWD~tG~~l~t-l~g------H~~~V~sls~d--G~~L 472 (1149)
... .+ ......+.++.+.+ ++.|+ +=...+.|+.++.+|....+ +.. ....+..|++| ++.|
T Consensus 324 l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nL 403 (628)
T 4a0p_A 324 IDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYI 403 (628)
T ss_dssp CCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEE
T ss_pred cccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeE
Confidence 211 11 12234567788776 45664 54457889999987743322 222 23357788876 5544
Q ss_pred -EEeecCcEEEEEeCCCceeeeee-ccCCCeEEEEec---CCeEEeecCCCceeeeec
Q 001123 473 -WVGYMNGIVQVLDLEGNLLGGWV-AHSSPVIKMAVG---AGYIFTLANHGGIRGWNV 525 (1149)
Q Consensus 473 -aSGs~DGtIrlWD~~G~~l~~l~-gH~~~V~sLa~D---g~~LaSgS~DgtIRlWdl 525 (1149)
++-+..+.|.+-+++|+....+. .......+|+.| |.+.+|-.....-+||.+
T Consensus 404 Y~td~~~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~ 461 (628)
T 4a0p_A 404 YWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERA 461 (628)
T ss_dssp EEEETTTTEEEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEE
T ss_pred EEEcCCCCEEEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEE
Confidence 56667789999999988765554 344567788854 444445332222255544
No 335
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=76.95 E-value=1e+02 Score=34.80 Aligned_cols=60 Identities=12% Similarity=0.255 Sum_probs=39.3
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCC----Cc---EE--EEEC--CCcEEEEe
Q 001123 200 DEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY----GD---LW--SGSE--GGGIKIWP 268 (1149)
Q Consensus 200 s~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpd----G~---L~--SGS~--DgTIRVWd 268 (1149)
+|...+++...+++-+.++|+.+ + .+..+.+ +.++.|.+-|+ |+ |+ |.-. +.+|++++
T Consensus 37 dp~~s~ii~t~k~~gL~Vydl~G-~--------~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~ 105 (355)
T 3amr_A 37 TPQNSKLITTNKKSGLVVYSLDG-K--------MLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYA 105 (355)
T ss_dssp CGGGCEEEEEETTTEEEEEETTS-C--------EEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEE
T ss_pred CCCccEEEEEcCCCCEEEEcCCC-c--------EEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEE
Confidence 34556777778888999999954 3 3555543 56777776663 32 44 3334 68999997
Q ss_pred CC
Q 001123 269 WE 270 (1149)
Q Consensus 269 l~ 270 (1149)
+.
T Consensus 106 iD 107 (355)
T 3amr_A 106 ID 107 (355)
T ss_dssp EC
T ss_pred EC
Confidence 74
No 336
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=72.62 E-value=55 Score=38.18 Aligned_cols=117 Identities=7% Similarity=0.045 Sum_probs=72.7
Q ss_pred EEEeeCCeEEEeCCCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEEeCCCeEE
Q 001123 137 TIVCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIM 216 (1149)
Q Consensus 137 ~l~~~~~~l~ag~D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSGS~DGtIR 216 (1149)
.....+..++...++.||.-++.+...-+.+ .. +. .+. ...|.-+..||+|.+||--+. .+|.
T Consensus 27 ~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L------------~~-~~--~i~-f~~i~qlvlSpsG~lLAl~g~-~~V~ 89 (452)
T 3pbp_A 27 FSSQNGTRIVFIQDNIIRWYNVLTDSLYHSL------------NF-SR--HLV-LDDTFHVISSTSGDLLCLFND-NEIF 89 (452)
T ss_dssp EEETTTTEEEEEETTEEEEEETTTCSSCEEE------------EC-TT--TCC-CCTTCEEEECTTSSEEEEECS-SEEE
T ss_pred EEEcCCCEEEEEECCEEEEEECCCCCcceEE------------ec-Cc--ccc-cCceeEEEECCCCCEEEEecC-CeEE
Confidence 3344488888888899998887632211110 00 00 001 224556899999999998654 4788
Q ss_pred EEECCCCCCCCC-----CCccceEEee-c-----CCCCEEEEEEeCCCc----EEEEECCCcEEEEeCCC
Q 001123 217 CWKMNARLLDSD-----DGFGEVLSWQ-A-----HRGPVLSLCISSYGD----LWSGSEGGGIKIWPWEA 271 (1149)
Q Consensus 217 vWdl~~g~~~~~-----~~~~~~~~l~-G-----H~~~VtsVafSpdG~----L~SGS~DgTIRVWdl~t 271 (1149)
|=.+..+..... .++. +.++. | .+.+|..+.|+|-|. |+.=-.|++||+||+..
T Consensus 90 Vv~LP~~~~~~~~~~~~~~~q-~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 90 VMEVPWGYSNVEDVSIQDAFQ-IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp EEECCTTCSCCCCHHHHHTTE-EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred EEEecCccccCcccccccccc-eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 877763221000 1111 22332 1 357899999999763 88888999999999975
No 337
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=72.52 E-value=1.1e+02 Score=35.35 Aligned_cols=66 Identities=12% Similarity=0.179 Sum_probs=41.7
Q ss_pred eEEEEEcC-CCcEEEEe-CCCeEEEEeC-CCCeeEeeec-CC-ccEEEE--EecCCEEEEee-cCcEEEEEeCC
Q 001123 422 TEALTTSI-DGMIWTGG-ANGLLLQWDP-NGNRLQDFQY-LP-FAVQCL--CTFGSQIWVGY-MNGIVQVLDLE 487 (1149)
Q Consensus 422 V~ava~s~-Dg~laSgs-~DgtIrlWD~-tG~~l~tl~g-H~-~~V~sl--s~dG~~LaSGs-~DGtIrlWD~~ 487 (1149)
...+++.+ +|.|+.+. .++.|+.+|. +|..+..+.. .. ..-..+ .++|++|+.+. ..+.|+.+|.+
T Consensus 230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 34567788 78887655 4678999999 4766333322 11 122234 45688676665 46899998864
No 338
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=71.39 E-value=1.7e+02 Score=34.64 Aligned_cols=62 Identities=10% Similarity=-0.003 Sum_probs=40.5
Q ss_pred CceEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeec----CCCCEEEEEE-------eCCCc-EEE
Q 001123 192 SSVMCMVGDEA--SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA----HRGPVLSLCI-------SSYGD-LWS 257 (1149)
Q Consensus 192 ~~V~~lafs~d--g~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~G----H~~~VtsVaf-------SpdG~-L~S 257 (1149)
.....|+|+|. +.+.++-...+.|++.|+.++. +.++.. .-.....|+| +++|. |+.
T Consensus 139 ~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~---------v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyv 209 (496)
T 3kya_A 139 SDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM---------LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIV 209 (496)
T ss_dssp CSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE---------EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEE
T ss_pred CCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE---------EEEEEccCccccCCCcEEEEeecccccCCCCCEEEE
Confidence 35678999983 4455554445778889988754 334322 1235889999 99997 766
Q ss_pred EECCC
Q 001123 258 GSEGG 262 (1149)
Q Consensus 258 GS~Dg 262 (1149)
+...+
T Consensus 210 ad~~~ 214 (496)
T 3kya_A 210 AIDYD 214 (496)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 65443
No 339
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=71.28 E-value=1.1e+02 Score=34.32 Aligned_cols=88 Identities=7% Similarity=0.110 Sum_probs=56.8
Q ss_pred CCeEEEEeCC----CCeeEee--ecC----------C-ccEEEEEec--CCEEEEeecC-cEEEEEeCCCceeeeeeccC
Q 001123 439 NGLLLQWDPN----GNRLQDF--QYL----------P-FAVQCLCTF--GSQIWVGYMN-GIVQVLDLEGNLLGGWVAHS 498 (1149)
Q Consensus 439 DgtIrlWD~t----G~~l~tl--~gH----------~-~~V~sls~d--G~~LaSGs~D-GtIrlWD~~G~~l~~l~gH~ 498 (1149)
+..|..+|+. |+.+... ... . ...+.++.| |+.-++++.- +.|...|.+|+.+..|.-..
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~ 178 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWES 178 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECC
T ss_pred CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecC
Confidence 5668888876 6554322 221 1 236677664 8888888888 99998898887555443222
Q ss_pred C------CeEEEE--ecCCeEEeecCCCceeeeecc
Q 001123 499 S------PVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 499 ~------~V~sLa--~Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
. ..+.|+ +||+.|+.....+.+...|+.
T Consensus 179 ~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 179 GNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp CCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred CCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 1 234566 588877776558888777765
No 340
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=70.48 E-value=11 Score=39.74 Aligned_cols=65 Identities=11% Similarity=0.054 Sum_probs=46.6
Q ss_pred CCceEeecCcEEec----cceeEEEEEEecCCeeeEEEEEeecCCccccCCCCCCCCCCCCCCCCCCCeEEecCceeeCC
Q 001123 966 IPETIVSTNNIIIQ----NQDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIKP 1041 (1149)
Q Consensus 966 ~p~~~~~~~~i~~~----~~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wl~v~p~~g~i~p 1041 (1149)
.|+..++ ..++|+ ......++|+|+|.. +-...-+. ..| ..+.+++....|.|
T Consensus 117 ~~~i~~~-~~~dfG~i~g~~~~~~f~i~N~G~~-pL~I~~v~--------------------~sc-gct~~~~~~~~i~P 173 (220)
T 2qsv_A 117 TGVMELS-TYLDMGQLDGETTKAAIEIRNVGAG-PLRLHSVT--------------------TRN-PALTAVPDRTEIKP 173 (220)
T ss_dssp CCCEECC-CEEEEEECTTSCEEEEEEEEECSSS-CEEEEEEE--------------------ECS-TTEEEEESCSEECT
T ss_pred CCEEEEE-eEEeeeccCCCeEEEEEEEEECCCC-CEEEEEEE--------------------eCC-CCEeeecCCccCCC
Confidence 4566666 666665 455678999999987 44443221 114 46889999999999
Q ss_pred CCeeEEEEEEee
Q 001123 1042 DRTAEMSVHHED 1053 (1149)
Q Consensus 1042 ~~~~~i~~~~~~ 1053 (1149)
||+.+|+++..-
T Consensus 174 Ge~~~i~v~~~~ 185 (220)
T 2qsv_A 174 GGSTLLRIAVDP 185 (220)
T ss_dssp TCEEEEEEEECH
T ss_pred CCEEEEEEEEec
Confidence 999999999753
No 341
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=69.24 E-value=1.4e+02 Score=33.01 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=22.4
Q ss_pred CEEEEEEeCCCcEEEEECCCcEEEEe
Q 001123 243 PVLSLCISSYGDLWSGSEGGGIKIWP 268 (1149)
Q Consensus 243 ~VtsVafSpdG~L~SGS~DgTIRVWd 268 (1149)
.-.+|+|.|||+|+.+..++.|++++
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~ 57 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR 57 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE
Confidence 45689999999988778889999998
No 342
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=68.40 E-value=49 Score=37.10 Aligned_cols=69 Identities=16% Similarity=0.106 Sum_probs=47.2
Q ss_pred CceEEEEEcCCCcEEEEeCCCeEEEEeCCCC-eeEeee---cCCccEEEEEec-----CCEEEEeecC--------cEEE
Q 001123 420 RRTEALTTSIDGMIWTGGANGLLLQWDPNGN-RLQDFQ---YLPFAVQCLCTF-----GSQIWVGYMN--------GIVQ 482 (1149)
Q Consensus 420 ~~V~ava~s~Dg~laSgs~DgtIrlWD~tG~-~l~tl~---gH~~~V~sls~d-----G~~LaSGs~D--------GtIr 482 (1149)
.....+++.|||.|+.+..+|.|+++|.+|+ .+..+. ........|+++ +.+|++.... ..|.
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~ 108 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVI 108 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEE
Confidence 4567888999999988888999999987775 222221 122456777764 4577776642 6788
Q ss_pred EEeCCC
Q 001123 483 VLDLEG 488 (1149)
Q Consensus 483 lWD~~G 488 (1149)
.|+.++
T Consensus 109 r~~~~~ 114 (354)
T 3a9g_A 109 RGRLDG 114 (354)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 888653
No 343
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=67.92 E-value=1.3e+02 Score=32.14 Aligned_cols=112 Identities=11% Similarity=0.033 Sum_probs=67.8
Q ss_pred eEEEEEee--CCeEEEeC--CCCEEEEeCCCCCCCCccccccccCCCCCCCCCCceeeeecCCceEEEEEcCCCCEEEEE
Q 001123 134 FLRTIVCT--EEQLWAGG--ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (1149)
Q Consensus 134 ~l~~l~~~--~~~l~ag~--D~tVrvWd~~~g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~lafs~dg~~LaSG 209 (1149)
-+.-|+.+ .+.||+-. ++.|-.-|.. +...+. .++.|..-.-.+++.+++.++++-
T Consensus 28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~-------------------i~l~g~~D~EGIa~~~~g~~~vs~ 87 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRT-------------------IPLDFVKDLETIEYIGDNQFVISD 87 (255)
T ss_dssp CEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEE-------------------EECSSCSSEEEEEECSTTEEEEEE
T ss_pred CcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEE-------------------EecCCCCChHHeEEeCCCEEEEEE
Confidence 35566665 67899844 4446666654 443322 011123345567888888887776
Q ss_pred eCCCeEEEEECCCCCCCCCCCccceE--Eee----cCCCCEEEEEEeCCCc-EEEEECCCcEEEEeCC
Q 001123 210 HRDGRIMCWKMNARLLDSDDGFGEVL--SWQ----AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (1149)
Q Consensus 210 S~DGtIRvWdl~~g~~~~~~~~~~~~--~l~----GH~~~VtsVafSpdG~-L~SGS~DgTIRVWdl~ 270 (1149)
-.++.+.+.++.... . ..... .+. .+.....+|+++|.++ |+.+.+....+||.+.
T Consensus 88 E~~~~l~~~~v~~~~----~-i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~ 150 (255)
T 3qqz_A 88 ERDYAIYVISLTPNS----E-VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN 150 (255)
T ss_dssp TTTTEEEEEEECTTC----C-EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred CCCCcEEEEEcCCCC----e-eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence 677888888876532 0 00011 111 1345679999999884 8888877777777774
No 344
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=57.39 E-value=55 Score=37.74 Aligned_cols=106 Identities=10% Similarity=0.006 Sum_probs=64.7
Q ss_pred CceEEEEEcC--CCcEEEEeCCCeEEEEeCCCCeeEeeecCCccEEEEEe--cCCEEEEeec-----CcEEEEEeCCCce
Q 001123 420 RRTEALTTSI--DGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGYM-----NGIVQVLDLEGNL 490 (1149)
Q Consensus 420 ~~V~ava~s~--Dg~laSgs~DgtIrlWD~tG~~l~tl~gH~~~V~sls~--dG~~LaSGs~-----DGtIrlWD~~G~~ 490 (1149)
.....|+++| ++.|+.+...+.|+.+|.++..+..+.........|++ +|++|+++.. ...+.+.+.+|..
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 3556788886 47788777668899999977666666554455677766 5887777664 2245555655543
Q ss_pred e--eeeeccCCCeEEEE--e-cCCeEEeecCCCceeeeecc
Q 001123 491 L--GGWVAHSSPVIKMA--V-GAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 491 l--~~l~gH~~~V~sLa--~-Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
. ..+.. ......++ + +|...++-..++.|+.++..
T Consensus 217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~ 256 (430)
T 3tc9_A 217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFT 256 (430)
T ss_dssp CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETT
T ss_pred eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence 2 22221 12233444 4 45555555566777777754
No 345
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=56.48 E-value=2.5e+02 Score=31.45 Aligned_cols=72 Identities=11% Similarity=0.039 Sum_probs=45.8
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEe----ecCCCCEEEEEEeCC----CcEE-EE--EC
Q 001123 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW----QAHRGPVLSLCISSY----GDLW-SG--SE 260 (1149)
Q Consensus 192 ~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l----~GH~~~VtsVafSpd----G~L~-SG--S~ 260 (1149)
.....|+|.|||+++++--..|+|++++..++.. ..+..+ ....+....|+|+|+ +.|+ +- ..
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~------~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK------TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE------EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE------eeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 3557899999999888866699999998765441 112111 223567899999995 5554 32 23
Q ss_pred CCcEEEEeC
Q 001123 261 GGGIKIWPW 269 (1149)
Q Consensus 261 DgTIRVWdl 269 (1149)
++.|--|.+
T Consensus 106 ~~~v~R~~~ 114 (347)
T 3das_A 106 DNRIVRMLY 114 (347)
T ss_dssp SEEEEEEEB
T ss_pred CCEEEEEEe
Confidence 444444444
No 346
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=56.07 E-value=1.4e+02 Score=33.14 Aligned_cols=68 Identities=15% Similarity=0.058 Sum_probs=46.0
Q ss_pred CceEEEEEcCCCcEEEEeCCCeEEEEeCCCCe--eEeee---cCCccEEEEEec-----CCEEEEeecC------cEEEE
Q 001123 420 RRTEALTTSIDGMIWTGGANGLLLQWDPNGNR--LQDFQ---YLPFAVQCLCTF-----GSQIWVGYMN------GIVQV 483 (1149)
Q Consensus 420 ~~V~ava~s~Dg~laSgs~DgtIrlWD~tG~~--l~tl~---gH~~~V~sls~d-----G~~LaSGs~D------GtIrl 483 (1149)
.....+++.|||.++.+..+|.|++++ +|+. +..+. ........|+++ +.+|+++... ..|..
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 346688899999998888899999998 6642 22221 122356677664 4577776653 67888
Q ss_pred EeCCC
Q 001123 484 LDLEG 488 (1149)
Q Consensus 484 WD~~G 488 (1149)
|+.++
T Consensus 110 ~~~~~ 114 (352)
T 2ism_A 110 LRHLG 114 (352)
T ss_dssp EEECS
T ss_pred EEeCC
Confidence 88663
No 347
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=53.02 E-value=2.9e+02 Score=31.16 Aligned_cols=106 Identities=11% Similarity=0.239 Sum_probs=67.4
Q ss_pred CceEEEEE--cC-CCc--EEEEeCCCeEEEEeC--C--C----CeeEeeecCCccEEEEEec--CCEEEEeecCcEEEEE
Q 001123 420 RRTEALTT--SI-DGM--IWTGGANGLLLQWDP--N--G----NRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVL 484 (1149)
Q Consensus 420 ~~V~ava~--s~-Dg~--laSgs~DgtIrlWD~--t--G----~~l~tl~gH~~~V~sls~d--G~~LaSGs~DGtIrlW 484 (1149)
..+..+++ ++ .+. ++....+|.+..|++ + | +.+++|.-.. .+-.+..| ..+|+.|-.+.-|..+
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs-q~EgcvvDd~~g~Lyv~eEd~GIw~~ 206 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS-QTEGMAADDEYGRLYIAEEDEAIWKF 206 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS-CEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC-CcceEEEcCCCCeEEEecccceEEEE
Confidence 33444554 65 353 677888899999998 2 2 4577776543 45544444 6899999999778777
Q ss_pred eCC------Cceeeee-eccCC-CeEEEEe----cCC-eEEeec-CCCceeeeecc
Q 001123 485 DLE------GNLLGGW-VAHSS-PVIKMAV----GAG-YIFTLA-NHGGIRGWNVT 526 (1149)
Q Consensus 485 D~~------G~~l~~l-~gH~~-~V~sLa~----Dg~-~LaSgS-~DgtIRlWdl~ 526 (1149)
|.+ ++++..+ .+|-. .+-.|+. +++ ||+..| .+++.-++|..
T Consensus 207 da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 207 SAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp ECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred eCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 854 3355444 23333 5666663 444 555444 67899999864
No 348
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=52.25 E-value=47 Score=37.62 Aligned_cols=71 Identities=13% Similarity=-0.022 Sum_probs=47.8
Q ss_pred CCceEEEEEcCCCCEEEEEe---CC------------CeEEEEECCCCCCCCCCCccceEEeecCCCCEEEEEEeCCCc-
Q 001123 191 VSSVMCMVGDEASGVVWSGH---RD------------GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD- 254 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS---~D------------GtIRvWdl~~g~~~~~~~~~~~~~l~GH~~~VtsVafSpdG~- 254 (1149)
....+.++++++|+..+|.. .| ..=++|.++.+. +..+...-..-+.|+|||||+
T Consensus 164 ~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~---------~~~~~~~l~~pNGia~spDg~~ 234 (355)
T 3sre_A 164 LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND---------VRVVAEGFDFANGINISPDGKY 234 (355)
T ss_dssp CSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTC---------CEEEEEEESSEEEEEECTTSSE
T ss_pred CCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCe---------EEEeecCCcccCcceECCCCCE
Confidence 44678999999999888765 12 234555554433 222223334578999999997
Q ss_pred E-EEEECCCcEEEEeCC
Q 001123 255 L-WSGSEGGGIKIWPWE 270 (1149)
Q Consensus 255 L-~SGS~DgTIRVWdl~ 270 (1149)
| ++-+..++|..++++
T Consensus 235 lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 235 VYIAELLAHKIHVYEKH 251 (355)
T ss_dssp EEEEEGGGTEEEEEEEC
T ss_pred EEEEeCCCCeEEEEEEC
Confidence 5 466677899999985
No 349
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=50.55 E-value=2.6e+02 Score=29.85 Aligned_cols=76 Identities=17% Similarity=0.108 Sum_probs=47.2
Q ss_pred CceEEEEEcCCC-cEEEEeCCCeEEEEeCCC----CeeEeeec-------CCccEEEEEec---CCEEEEeecCcEEEEE
Q 001123 420 RRTEALTTSIDG-MIWTGGANGLLLQWDPNG----NRLQDFQY-------LPFAVQCLCTF---GSQIWVGYMNGIVQVL 484 (1149)
Q Consensus 420 ~~V~ava~s~Dg-~laSgs~DgtIrlWD~tG----~~l~tl~g-------H~~~V~sls~d---G~~LaSGs~DGtIrlW 484 (1149)
...+.+++.+++ +|+++.+.....||..+| ..++.+.. +...+.++++| |.+++....+..|-.+
T Consensus 121 ~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~ 200 (255)
T 3qqz_A 121 CGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEV 200 (255)
T ss_dssp SCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEE
Confidence 346778888876 577766654444444422 23333211 22345577765 6788888888999999
Q ss_pred eCCCceeeeee
Q 001123 485 DLEGNLLGGWV 495 (1149)
Q Consensus 485 D~~G~~l~~l~ 495 (1149)
|.+|+.+..+.
T Consensus 201 d~~g~~~~~~~ 211 (255)
T 3qqz_A 201 TLVGEVIGEMS 211 (255)
T ss_dssp CTTCCEEEEEE
T ss_pred cCCCCEEEEEE
Confidence 99998655433
No 350
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=49.01 E-value=46 Score=42.78 Aligned_cols=35 Identities=9% Similarity=0.043 Sum_probs=31.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCC
Q 001123 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLL 225 (1149)
Q Consensus 191 ~~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~ 225 (1149)
...+.+++..++...|++=+.|+++|+|++.++.|
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~ 269 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQC 269 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEE
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCe
Confidence 45678888888999999999999999999999875
No 351
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=47.12 E-value=3.4e+02 Score=30.29 Aligned_cols=69 Identities=13% Similarity=0.174 Sum_probs=44.0
Q ss_pred EEEEEcCCCCEEEEEe-CCCeEEEEECCCCCCCCCCCccceEEeec----CCC--CEEEEEE---eCCCcEEEEEC----
Q 001123 195 MCMVGDEASGVVWSGH-RDGRIMCWKMNARLLDSDDGFGEVLSWQA----HRG--PVLSLCI---SSYGDLWSGSE---- 260 (1149)
Q Consensus 195 ~~lafs~dg~~LaSGS-~DGtIRvWdl~~g~~~~~~~~~~~~~l~G----H~~--~VtsVaf---SpdG~L~SGS~---- 260 (1149)
-|.+|++...+++-++ ..|+|-.|+..++.. .++ .+.+ ..+ .+.+|.+ .|+|+|+..+.
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~------~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a 88 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH------FNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS 88 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCE------EEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeE------EEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence 3678987555555555 899999999975431 112 2222 111 3578999 68888654333
Q ss_pred ----------CCcEEEEeCC
Q 001123 261 ----------GGGIKIWPWE 270 (1149)
Q Consensus 261 ----------DgTIRVWdl~ 270 (1149)
+..|..+|+.
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~ 108 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLP 108 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESS
T ss_pred ccccccccCCCCEEEEEcCC
Confidence 6778888887
No 352
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=43.42 E-value=1.7e+02 Score=34.02 Aligned_cols=58 Identities=7% Similarity=0.114 Sum_probs=37.8
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEee------cCCCCEEEEEEeC----CCcEE
Q 001123 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ------AHRGPVLSLCISS----YGDLW 256 (1149)
Q Consensus 193 ~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~------GH~~~VtsVafSp----dG~L~ 256 (1149)
....|+|.|+|+++++-...+.|++++..++.. ..+..+. ...+....|+|+| ++.|+
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~------~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lY 95 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSV------KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIY 95 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCE------EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEE
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE------eEEecCCccccccCCCCceeEEEECCCcCcCCEEE
Confidence 456899999999888754445788887654431 1122221 1256788999999 45653
No 353
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=43.17 E-value=63 Score=34.42 Aligned_cols=71 Identities=11% Similarity=0.025 Sum_probs=41.2
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEee---cCCCCEEEEEEeCCCcEEEEECCCcEEEEe
Q 001123 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ---AHRGPVLSLCISSYGDLWSGSEGGGIKIWP 268 (1149)
Q Consensus 192 ~~V~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~---GH~~~VtsVafSpdG~L~SGS~DgTIRVWd 268 (1149)
..+..++|+|+|.+-+- .+|. +|......+....-+.. .+-. |..+ -.++.|.|+|.|+.+ .||.|.-|+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~--Ly~~~~~t~~~~~W~~s-~t~IG~~Gw~~-F~a~~fD~~G~LYav-~dG~iyr~~ 113 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDK--IYKGTPPTHDNDNWMGR-AKKIGNGGWNQ-FQFLFFDPNGYLYAV-SKDKLYKAS 113 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTE--EEEESCCCSTTCCHHHH-CEEEECSCGGG-CSEEEECTTSCEEEE-ETTEEEEES
T ss_pred ccceeEEECCCccEEEE--eCCe--EEEECCCCCCccccccc-ccEeccccccc-ceEEEECCCCCEEEe-CCCEEEEeC
Confidence 46679999998875544 6776 55543322101000010 1111 1122 378999999998766 569998777
Q ss_pred C
Q 001123 269 W 269 (1149)
Q Consensus 269 l 269 (1149)
.
T Consensus 114 p 114 (236)
T 1tl2_A 114 P 114 (236)
T ss_dssp C
T ss_pred C
Confidence 5
No 354
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=37.92 E-value=1.1e+02 Score=35.73 Aligned_cols=72 Identities=18% Similarity=0.186 Sum_probs=48.0
Q ss_pred CCceEEEEEcCC---CCEEEEEeCCCeEEEEECCCCCCCCCCCc--c---ceEEeecCCCCEEEEEEeCCCc-EEEEE--
Q 001123 191 VSSVMCMVGDEA---SGVVWSGHRDGRIMCWKMNARLLDSDDGF--G---EVLSWQAHRGPVLSLCISSYGD-LWSGS-- 259 (1149)
Q Consensus 191 ~~~V~~lafs~d---g~~LaSGS~DGtIRvWdl~~g~~~~~~~~--~---~~~~l~GH~~~VtsVafSpdG~-L~SGS-- 259 (1149)
..+|..+.|.|- +..|+.=-.|++||+||+.... ..+. . ....+..+-.-|.+++|.++|- |+..+
T Consensus 124 ~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~---~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t 200 (452)
T 3pbp_A 124 KSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQ---EKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTT 200 (452)
T ss_dssp CCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTT---SCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECT
T ss_pred CCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCC---CCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecC
Confidence 467999999985 5689999999999999998632 0111 0 0111122346788999999773 66544
Q ss_pred CCCcEE
Q 001123 260 EGGGIK 265 (1149)
Q Consensus 260 ~DgTIR 265 (1149)
++|-|.
T Consensus 201 ~~GDIY 206 (452)
T 3pbp_A 201 EGGDIF 206 (452)
T ss_dssp TSCEEE
T ss_pred CCCCEE
Confidence 667653
No 355
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=35.72 E-value=8.7e+02 Score=31.69 Aligned_cols=85 Identities=20% Similarity=0.210 Sum_probs=57.7
Q ss_pred CeEEEEeC-CCCeeEeeecCC-ccEEEEE---ec---CCEEEEee----------cCcEEEEEeCC-Cce--eeeeeccC
Q 001123 440 GLLLQWDP-NGNRLQDFQYLP-FAVQCLC---TF---GSQIWVGY----------MNGIVQVLDLE-GNL--LGGWVAHS 498 (1149)
Q Consensus 440 gtIrlWD~-tG~~l~tl~gH~-~~V~sls---~d---G~~LaSGs----------~DGtIrlWD~~-G~~--l~~l~gH~ 498 (1149)
+.|++.|. +.+.+..+.-.. ..+.|++ +. ..+|++|. ..|.|.++++. +++ +..- -..
T Consensus 807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~-~v~ 885 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEK-EVK 885 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEE-EES
T ss_pred EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEE-EcC
Confidence 46899998 677776665433 3466664 22 37999987 45899999975 432 2221 336
Q ss_pred CCeEEEE-ecCCeEEeecCCCceeeeeccC
Q 001123 499 SPVIKMA-VGAGYIFTLANHGGIRGWNVTS 527 (1149)
Q Consensus 499 ~~V~sLa-~Dg~~LaSgS~DgtIRlWdl~s 527 (1149)
++|++|+ ++|+.++..+ ++|++|++..
T Consensus 886 g~v~al~~~~g~Lla~ig--~~l~vy~l~~ 913 (1158)
T 3ei3_A 886 GAVYSMVEFNGKLLASIN--STVRLYEWTT 913 (1158)
T ss_dssp SCEEEEEEETTEEEEEET--TEEEEEEECT
T ss_pred CcCEEEeeeCCEEEEEcC--CEEEEEECCC
Confidence 7899998 6886666554 7899999864
No 356
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=34.99 E-value=6.7e+02 Score=30.12 Aligned_cols=88 Identities=11% Similarity=0.067 Sum_probs=56.2
Q ss_pred CceEEEEEcC-CCcEE-EEeCCCeEEEEeCCCCeeEeee-cCCccEEEEEec--CCEEE-EeecCcEEEEEeCCCceeee
Q 001123 420 RRTEALTTSI-DGMIW-TGGANGLLLQWDPNGNRLQDFQ-YLPFAVQCLCTF--GSQIW-VGYMNGIVQVLDLEGNLLGG 493 (1149)
Q Consensus 420 ~~V~ava~s~-Dg~la-Sgs~DgtIrlWD~tG~~l~tl~-gH~~~V~sls~d--G~~La-SGs~DGtIrlWD~~G~~l~~ 493 (1149)
..+.++++.+ ++.|+ +-...+.|+.++++|....++. ..-.....+++| ++.|+ +-+..+.|.+-+++|+....
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~ 428 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI 428 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE
Confidence 4566788876 56665 4445789999999774444333 222455677775 55554 44567899999999876555
Q ss_pred eec-cCCCeEEEEec
Q 001123 494 WVA-HSSPVIKMAVG 507 (1149)
Q Consensus 494 l~g-H~~~V~sLa~D 507 (1149)
+.. .-..-.+|+.|
T Consensus 429 l~~~~l~~P~~iavd 443 (619)
T 3s94_A 429 LISEDLEEPRAIVLD 443 (619)
T ss_dssp EECTTCCSEEEEEEE
T ss_pred EEECCCCCeeeEEEE
Confidence 543 23456777754
No 357
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=33.26 E-value=1.1e+02 Score=39.24 Aligned_cols=36 Identities=8% Similarity=0.010 Sum_probs=27.0
Q ss_pred eEEEEEcCCCCEEEEe-cCCceEEEEcCCccEEEEEe
Q 001123 314 IKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVFN 349 (1149)
Q Consensus 314 v~~las~~~~~~v~Sa-sd~tIrLWD~~TG~~L~~l~ 349 (1149)
+.+++...+...+++. -|+++|+|++.+|+|+.+..
T Consensus 238 ~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp EEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred EEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 4555555666677664 57899999999999988754
No 358
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=30.76 E-value=73 Score=33.92 Aligned_cols=67 Identities=9% Similarity=-0.072 Sum_probs=43.8
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCccceEEeecC--CCCEEEEEEeCCCcEEEEECCCcEEEE
Q 001123 195 MCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH--RGPVLSLCISSYGDLWSGSEGGGIKIW 267 (1149)
Q Consensus 195 ~~lafs~dg~~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~~l~GH--~~~VtsVafSpdG~L~SGS~DgTIRVW 267 (1149)
.++.|+++|.+.++ .||.|.-|+.-+..+. .=... .+..|- =..+..|.|.|+|.|+... |+.+.-+
T Consensus 91 ~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~--~Wl~~-a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~ 159 (236)
T 1tl2_A 91 QFLFFDPNGYLYAV--SKDKLYKASPPQSDTD--NWIAR-ATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKA 159 (236)
T ss_dssp SEEEECTTSCEEEE--ETTEEEEESCCCSTTC--CHHHH-SEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEE
T ss_pred eEEEECCCCCEEEe--CCCEEEEeCCCcCCCC--ceecc-ccEeccCCCCceEEEEECCCceEEEEe-CCcEEec
Confidence 68999999998888 6799988886432210 00000 011111 1457999999999998888 8885433
No 359
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=27.91 E-value=5.8e+02 Score=27.56 Aligned_cols=81 Identities=11% Similarity=0.103 Sum_probs=51.3
Q ss_pred CeEEEEeCCCCeeEeeecCCccEEEEEecCCEEEEee----cCcEEEEEeCCCceeeeeeccCCCeEEEEecCCeEEeec
Q 001123 440 GLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGY----MNGIVQVLDLEGNLLGGWVAHSSPVIKMAVGAGYIFTLA 515 (1149)
Q Consensus 440 gtIrlWD~tG~~l~tl~gH~~~V~sls~dG~~LaSGs----~DGtIrlWD~~G~~l~~l~gH~~~V~sLa~Dg~~LaSgS 515 (1149)
..|+..++.|.....+.. .....++++|++|+-.. ....|+.-+++|.....+..|.. ..+.++++.|+=.+
T Consensus 88 ~~Iy~i~~dg~~~~~l~~--~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~--~~~~~~g~~iy~t~ 163 (302)
T 3s25_A 88 NSLCRIKRNGHGSTVLDP--DPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL--FTCNTSDRYFYYNN 163 (302)
T ss_dssp EEEEEEETTSCCCEEEEC--SCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC--CCSEEETTEEEEEC
T ss_pred CeEEEEeCCCCcceEeec--CCccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc--eEeeEECCEEEEEe
Confidence 468888887654444443 33457788999888665 45678888888876666666543 34467888777333
Q ss_pred C-CCceeeee
Q 001123 516 N-HGGIRGWN 524 (1149)
Q Consensus 516 ~-DgtIRlWd 524 (1149)
. ..+|..=+
T Consensus 164 ~g~~~Iy~~~ 173 (302)
T 3s25_A 164 PKNGQLYRYD 173 (302)
T ss_dssp TTTCCEEEEE
T ss_pred CCCceEEEEE
Confidence 3 44554444
No 360
>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase, F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces cerevisiae}
Probab=26.77 E-value=10 Score=44.57 Aligned_cols=17 Identities=53% Similarity=1.099 Sum_probs=15.3
Q ss_pred cccCccEEEEECccCCC
Q 001123 792 ELSEADMVIFLGDFNYR 808 (1149)
Q Consensus 792 ~i~~~D~vfw~GDlNyR 808 (1149)
++.+++.|||=||||||
T Consensus 373 ~L~~S~LVIFKGDLNYR 389 (471)
T 3pt1_A 373 DLQKSNLVIFKGDLNYR 389 (471)
T ss_dssp HHTTCSEEEEEHHHHHH
T ss_pred HHhhCcEEEEecchhhh
Confidence 46789999999999999
No 361
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=26.34 E-value=4.2e+02 Score=30.79 Aligned_cols=58 Identities=7% Similarity=0.132 Sum_probs=34.9
Q ss_pred ceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCCCCCCCccceE-Ee-e----cCCCCEEEEEEeCC
Q 001123 193 SVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVL-SW-Q----AHRGPVLSLCISSY 252 (1149)
Q Consensus 193 ~V~~lafs~dg~-~LaSGS~DGtIRvWdl~~g~~~~~~~~~~~~-~l-~----GH~~~VtsVafSpd 252 (1149)
.-..|+|.|||. .|+-+.+.|.|++++.++... ..++..+. .+ . +-.+....|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~--~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIF--KEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBC--SSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCee--eeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 446799999985 344457899999997653210 01111010 01 1 12567899999996
No 362
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=24.64 E-value=7.5e+02 Score=27.42 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=41.7
Q ss_pred CCCcEEEEeCCCeEEEEeC-CCCeeEeeecCC--c-----cEEEEE-------ecCCEEEEeecCcEEEEEeCCCc
Q 001123 429 IDGMIWTGGANGLLLQWDP-NGNRLQDFQYLP--F-----AVQCLC-------TFGSQIWVGYMNGIVQVLDLEGN 489 (1149)
Q Consensus 429 ~Dg~laSgs~DgtIrlWD~-tG~~l~tl~gH~--~-----~V~sls-------~dG~~LaSGs~DGtIrlWD~~G~ 489 (1149)
.+|.+++|+.+|++.--|+ +|+.+-++.... . ...|.. ..+..|+.|..+.++.+-+.+|+
T Consensus 110 ~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~~sG~ 185 (339)
T 2be1_A 110 EDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHSYDGA 185 (339)
T ss_dssp CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEEEEEEEECEECCTTSC
T ss_pred cCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEECCCCC
Confidence 5778999999999999999 899988876431 1 011111 12567888888888888775554
No 363
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=23.90 E-value=1.2e+02 Score=39.52 Aligned_cols=33 Identities=6% Similarity=-0.018 Sum_probs=24.3
Q ss_pred EEEcCCCCEEEEe-cCCceEEEEcCCccEEEEEe
Q 001123 317 LLSDHSRAKVWSA-GFLSFALWDARTRELLKVFN 349 (1149)
Q Consensus 317 las~~~~~~v~Sa-sd~tIrLWD~~TG~~L~~l~ 349 (1149)
++...+...+++. -|+++|+||+.+|+|+.+..
T Consensus 243 ~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 243 MIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 3344455566664 47899999999999998764
No 364
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=23.20 E-value=4e+02 Score=29.34 Aligned_cols=67 Identities=16% Similarity=0.127 Sum_probs=42.3
Q ss_pred ceEEEEEcCCCc-EEEEeCCCeEEEEeCCCCee---Eee----ecCCccEEEEEec-----CCEEEEeec--------Cc
Q 001123 421 RTEALTTSIDGM-IWTGGANGLLLQWDPNGNRL---QDF----QYLPFAVQCLCTF-----GSQIWVGYM--------NG 479 (1149)
Q Consensus 421 ~V~ava~s~Dg~-laSgs~DgtIrlWD~tG~~l---~tl----~gH~~~V~sls~d-----G~~LaSGs~--------DG 479 (1149)
....+++.|||. ++.+...|.|++++.+|... ..+ .........|+++ +.+|+.... ..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 356788999999 99888999999998766432 211 1122345667654 566666543 23
Q ss_pred EEEEEeCC
Q 001123 480 IVQVLDLE 487 (1149)
Q Consensus 480 tIrlWD~~ 487 (1149)
.|..|+.+
T Consensus 99 ~v~r~~~~ 106 (353)
T 2g8s_A 99 AVGYGRLS 106 (353)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEC
Confidence 56666654
No 365
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=22.75 E-value=6.7e+02 Score=29.43 Aligned_cols=105 Identities=9% Similarity=0.013 Sum_probs=61.4
Q ss_pred ceEEEEEcC--CCcEEEEeCC-CeEEEEeCCCCeeEeeecC----CccEEEEEe---------cCCEEEEeecCc-----
Q 001123 421 RTEALTTSI--DGMIWTGGAN-GLLLQWDPNGNRLQDFQYL----PFAVQCLCT---------FGSQIWVGYMNG----- 479 (1149)
Q Consensus 421 ~V~ava~s~--Dg~laSgs~D-gtIrlWD~tG~~l~tl~gH----~~~V~sls~---------dG~~LaSGs~DG----- 479 (1149)
....+++.| ++.|+.+..+ +.|++.|..+..+.++..- ......|++ +|++|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 456788887 3567665543 6799999976666665432 124677766 588777776543
Q ss_pred --EEEEEeCC--Ccee-----eeeeccCCCeEEEE--e-cCCeEEeecCCCceeeeecc
Q 001123 480 --IVQVLDLE--GNLL-----GGWVAHSSPVIKMA--V-GAGYIFTLANHGGIRGWNVT 526 (1149)
Q Consensus 480 --tIrlWD~~--G~~l-----~~l~gH~~~V~sLa--~-Dg~~LaSgS~DgtIRlWdl~ 526 (1149)
.|.+.+.+ |+.. +.+..-. ....++ + ++.+.++-..++.|..+|+.
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred CceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 37777643 3332 1221111 122334 4 34445566677788888875
No 366
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=20.84 E-value=61 Score=36.47 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=36.1
Q ss_pred CCcEEEEeCCCeEEEEeC-CCCeeEeeecC-CccEEEEE-----ecCCEEEEe-ecCcEEEEEeCC-Cc
Q 001123 430 DGMIWTGGANGLLLQWDP-NGNRLQDFQYL-PFAVQCLC-----TFGSQIWVG-YMNGIVQVLDLE-GN 489 (1149)
Q Consensus 430 Dg~laSgs~DgtIrlWD~-tG~~l~tl~gH-~~~V~sls-----~dG~~LaSG-s~DGtIrlWD~~-G~ 489 (1149)
++.++.++.||.|.-.|. +|+.+=++... ..++.... .+|..++.. +.||.|..+|.+ |.
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~ 78 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGL 78 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCc
Confidence 345778888888888887 78766555432 12222221 123334343 589999999965 53
No 367
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=20.76 E-value=2.8e+02 Score=29.15 Aligned_cols=79 Identities=11% Similarity=-0.012 Sum_probs=40.7
Q ss_pred CeEEEEeC-CCC--eeEeeecCCccEEEEEecCCEEEEeecC-----cEEEEEeCCCc---eeeeeeccCCCeEEEEecC
Q 001123 440 GLLLQWDP-NGN--RLQDFQYLPFAVQCLCTFGSQIWVGYMN-----GIVQVLDLEGN---LLGGWVAHSSPVIKMAVGA 508 (1149)
Q Consensus 440 gtIrlWD~-tG~--~l~tl~gH~~~V~sls~dG~~LaSGs~D-----GtIrlWD~~G~---~l~~l~gH~~~V~sLa~Dg 508 (1149)
..+.++|. +++ .+..+......-.++..+++.++.|+.+ ..+.++|.+.. .+..+......-..+..++
T Consensus 173 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 252 (302)
T 2xn4_A 173 STVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNG 252 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETT
T ss_pred cEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECC
Confidence 35888888 332 2222222222223445678888888764 36889997632 2222211111112233577
Q ss_pred CeEEeecCCC
Q 001123 509 GYIFTLANHG 518 (1149)
Q Consensus 509 ~~LaSgS~Dg 518 (1149)
+.++-|+.++
T Consensus 253 ~i~v~GG~~~ 262 (302)
T 2xn4_A 253 LLYVVGGDDG 262 (302)
T ss_dssp EEEEECCBCS
T ss_pred EEEEECCcCC
Confidence 7777777654
Done!