RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 001124
(1149 letters)
>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1207
Score = 874 bits (2259), Expect = 0.0
Identities = 422/1220 (34%), Positives = 643/1220 (52%), Gaps = 108/1220 (8%)
Query: 19 QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV------- 71
+ +AP+ + D + ++ F + +GLV Q LDSFN FV+ ++ I+ + ++
Sbjct: 2 EDESAPI-TAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQH 60
Query: 72 ----SGIDPSIFLRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIEYVQG 126
I + F + + +P + DGV+ L P RL ++TY++ + V+++
Sbjct: 61 TTESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTY 120
Query: 127 SHTEKTT---------------MEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPL 171
+ E V IGR+PIMLRS C L E++L +L ECP
Sbjct: 121 EAIDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPF 180
Query: 172 DPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTS--STETVKSKTVIQME-- 227
D GGYFII G+EKVL+ QE+ + N V + + + V S S+ + ++
Sbjct: 181 DMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVK 240
Query: 228 --------KGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSA---LLLPS 276
+ L + IPI+++ +A+G+ D E+++ + D +L P
Sbjct: 241 LYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPC 300
Query: 277 IEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRP 336
+E+ I +E AL+++ + + G R A IL+ FL ++
Sbjct: 301 VEDG--FVIQDRETALDFIG--RRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESR 356
Query: 337 KCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVD 396
K F++ M+ R++ L++ DD+D+ G KRL+L+G L++ LF+ LFK + ++ + +
Sbjct: 357 KAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQ 416
Query: 397 IILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRK-GMTQVLARLSFIG 455
+ F++ I +IT GL+ L+TGN+ ++ M + G++QVL R ++
Sbjct: 417 RT---VEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSS 473
Query: 456 TLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEE 515
TL H+ R + + K++ PR L + WG++CP +TPEG+ACGLVKNL+LM+ ++ +
Sbjct: 474 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTD 533
Query: 516 EGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGK 575
P+I+ G+E LE +P++ V NG+ G HR P + +R LRR G
Sbjct: 534 PMPIITFLSEWGMEPLEDY--VPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGD 591
Query: 576 IGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD------KGISRIKEHHMKELLDG---- 625
I VS+ + +++ + I +D GRV RPL I + ++++ H+ +L+
Sbjct: 592 INPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQD 651
Query: 626 ---------VRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTT------------- 663
++ L EGL+EY+D EE + LIA+ D P
Sbjct: 652 IEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDVDPAKR 711
Query: 664 -----------HIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCR 712
H EI P ILGV A +IP+P HNQSPRNTYQ AMGKQAMG N R
Sbjct: 712 IRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVR 771
Query: 713 MDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDR 772
MD++ +L YPQ+PL TTR +E + + +L AGQNA VA+ YSGY+ ED+++MN+SS+DR
Sbjct: 772 MDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDR 831
Query: 773 GFGRCIVVKKYTAINQKYANS---TSDRILRPDRTGPGAERMQILDDDGLAAPGEIIKPN 829
G R + + Y +KY S T ++ R + LDDDGL APG +
Sbjct: 832 GLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGE 891
Query: 830 DVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIK 889
DV I K +P+ GQ + + + E +VD+V + ++++G +K
Sbjct: 892 DVIIGKTTPI---SPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVK 948
Query: 890 FLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGK 949
+R T+ P++GDKF+SRHGQKG G ++ED PF+ GI PDLI+NPH PSRMTV
Sbjct: 949 VRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAH 1008
Query: 950 MIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCP 1009
+IE L K G S F + TVE IS+ L +HG+ G +++Y+G TG
Sbjct: 1009 LIECLLSKVAALSGNEGDASPFTD-----ITVEGISKLLREHGYQSRGFEVMYNGHTGKK 1063
Query: 1010 LQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIA 1069
L A IF GP YYQ+L+HMV DK+HAR GP +LTRQP EGR+R+GGLR GEMERDC+IA
Sbjct: 1064 LMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIA 1123
Query: 1070 YGASMLIFERLMVSSDPFEVQVCRVCGLLGYY-NHKLKAGICSTCKNGDNISSMKLPYAC 1128
+GA+ + ERLM +SD F V +C +CGL+ C C N +I + +PYA
Sbjct: 1124 HGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAA 1183
Query: 1129 KLLIQELQSMNIVPRLKLAE 1148
KLL QEL +MNI PRL
Sbjct: 1184 KLLFQELMAMNITPRLYTDR 1203
>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus
[TaxId: 274]}
Length = 1119
Score = 618 bits (1595), Expect = 0.0
Identities = 232/1207 (19%), Positives = 425/1207 (35%), Gaps = 199/1207 (16%)
Query: 29 VDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIF--------- 79
+ +F + E + + L + ++S+ + + R N I + F
Sbjct: 3 IKRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFR-ETFPIEEEDKGK 61
Query: 80 ----LRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
L F + R+G+P CR D+TY AP+ ++ + H + ++
Sbjct: 62 GGLVLDFLEYRLGEP---------PFPQDECREKDLTYQAPLYARLQLI---HKDTGLIK 109
Query: 136 KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKN 195
+++V +G IP+M G FII G ++V++ Q S
Sbjct: 110 EDEVFLGHIPLMTED------------------------GSFIINGADRVIVSQIHRSPG 145
Query: 196 RVII-DTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254
D + G AS+ + + G + + +N+ +K P++++++ +G +
Sbjct: 146 VYFTPDPARPGRYIASIIPLPKRGPWIDLEVEPNGVVSMKVNK--RKFPLVLLLRVLGYD 203
Query: 255 SDQEVVQMVGRDPRYSALLLPSI----EECANLDIY---------TQEKALEYLEGKVKR 301
+ ++ L+ S+ E A + ++ ++KA+ Y+ G +
Sbjct: 204 QETLARELGAYGELVQGLMDESVFAMRPEEALIRLFTLLRPGDPPKRDKAVAYVYGLIAD 263
Query: 302 STFGSPPNDREGRAFSILRDVFLANVPVH--NNNFRPKCFYVAVMLRRMVEAMLNKDAMD 359
+A L + F+ + F + + A + +D
Sbjct: 264 PRRYDLGEAGRYKAEEKLGIRLSGRTLARFEDGEFKDEVFLPTLRYLFALTAGVPGHEVD 323
Query: 360 DKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI 419
D D++GN+R+ G+L++ F + + ++ S+ S + ++ + +I
Sbjct: 324 DIDHLGNRRIRTVGELMTDQFRVGLARLARG-VRERMLMGSEDSLTPAKLVNSRPLEAAI 382
Query: 420 TVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSP----QFEKSRKVSG 475
+ F R ++Q + + +L H R+S + R
Sbjct: 383 ---------------REF-FSRSQLSQFKDETNPLSSLRHKRRISALGPGGLTRERAGFD 426
Query: 476 PRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTT-DEEEGPLISLCYCLGVEDLELL 534
R + + +G +CP +TPEG GL+ +LA V P + + +++ +
Sbjct: 427 VRDVHRTHYGRICPVETPEGANIGLITSLAAYARVDELGFIRTPYRRVVGGVVTDEVVYM 486
Query: 535 SGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIA 594
+ E + A RR G+ V
Sbjct: 487 TATEEDR-------YTIAQANTPLEGNRIAAERVVARRKGEPVIVSPEEVEFMDVSPKQV 539
Query: 595 SDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEEN--NALIA 652
P + D + +M+ +R + EE +A
Sbjct: 540 FSVNTNLIPFLEHDDANRALMGSNMQ------TQAVPLIRAQAPVVMTGLEERVVRDSLA 593
Query: 653 LYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCR 712
+ + ++ + L+ YP N R
Sbjct: 594 ALYAEEDGEVAKVDGNRIVVRYEDGRLVEYPLRRFYRSNQGTALDQ-------------R 640
Query: 713 MDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDR 772
++ V L E L GQN VA+M + GY+ EDAIV+++ L R
Sbjct: 641 PRVVVGQRVRKGDLLADGPASE---NGFLALGQNVLVAIMPFDGYNFEDAIVISEELLKR 697
Query: 773 GFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQILDDDGLAAPGEIIKPNDVY 832
F I +++Y + A R LD++G+ G +KP D+
Sbjct: 698 DFYTSIHIERYEIEARDTKLGPERITRDIPHLSEAALR--DLDEEGVVRIGAEVKPGDIL 755
Query: 833 INKESPLETRGSIMSPTGQTDSRYRSARQT----YKGPDGETCVVDRVALCS-------- 880
+ + S AR + P GE +V R
Sbjct: 756 VGRTSFKGESEPTPEERLLRSIFGEKARDVKDTSLRVPPGEGGIVVRTVRLRRGDPGVEL 815
Query: 881 DKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHG 940
++ + R+ ++GDK ++RHG KGV I+ ED P G D+I+NP G
Sbjct: 816 KPGVREVVRVYVAQKRKLQVGDKLANRHGNKGVVAKILPVEDMPHLPDGTPVDVILNPLG 875
Query: 941 FPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY----- 995
PSRM +G+++E G AG G+ + F I E L + Y
Sbjct: 876 VPSRMNLGQILETHLGLAGYFLGQRYISPIFDG-----AKEPEIKELLAQAFEVYFGKRK 930
Query: 996 --------------------------------------NGKDMIYSGITGCPLQAYIFMG 1017
GK ++Y G TG P++ I +G
Sbjct: 931 GEGFGVDKREVEVLRRAEKLGLVTPGKTPEEQLKELFLQGKVVLYDGRTGEPIEGPIVVG 990
Query: 1018 PIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIF 1077
++ KL HMV DKMHAR +GP ++T+QP G+A+ GG R GEME L AYGA+ +
Sbjct: 991 QMFIMKLYHMVEDKMHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQ 1050
Query: 1078 ERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQS 1137
E L + SD E + G+++ +P + ++L++ELQ+
Sbjct: 1051 EMLTLKSDDIEGRNA----------------AYEAIIKGEDVPEPSVPESFRVLVKELQA 1094
Query: 1138 MNIVPRL 1144
+ + +
Sbjct: 1095 LALDVQT 1101
>d1ew4a_ d.82.2.1 (A:) CyaY {Escherichia coli [TaxId: 562]}
Length = 106
Score = 27.0 bits (60), Expect = 4.3
Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 347 RMVEAMLNK--DAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSR 404
R+ + + + +DD D + E++G ++++ FE+ K +I+ + + L+
Sbjct: 8 RLADQLWLTIEERLDDWDGDSDIDCEINGGVLTITFENGSKIIINRQEPLHQVWLATKQG 67
Query: 405 SSRFDLSQ 412
FDL
Sbjct: 68 GYHFDLKG 75
>d3pmga3 c.84.1.1 (A:304-420) Phosphoglucomutase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 117
Score = 27.3 bits (60), Expect = 5.5
Identities = 7/68 (10%), Positives = 14/68 (20%), Gaps = 3/68 (4%)
Query: 907 RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGG---KAGVSCG 963
+ G +G ++ L P G+ + +L G
Sbjct: 21 QTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGNLMDASKLSLCGEESFGTGSD 80
Query: 964 RFHYGSAF 971
Sbjct: 81 HIREKDGL 88
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC
{Salmonella typhimurium [TaxId: 90371]}
Length = 112
Score = 26.4 bits (58), Expect = 8.5
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 898 PELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGK 957
P L D+ SS T ++FP G + PHGF SR+ + + + L G
Sbjct: 53 PRLKDRSSSLADPASDIKTCDHYQNFPLYLGGETHEHYGIPHGFSSRIALERYLNGLFGD 112
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.406
Gapped
Lambda K H
0.267 0.0546 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,251,716
Number of extensions: 209417
Number of successful extensions: 456
Number of sequences better than 10.0: 1
Number of HSP's gapped: 432
Number of HSP's successfully gapped: 7
Length of query: 1149
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 1054
Effective length of database: 1,103,246
Effective search space: 1162821284
Effective search space used: 1162821284
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.5 bits)