Query 001126
Match_columns 1149
No_of_seqs 700 out of 3701
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 16:32:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001126.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001126hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03008 Phospholipase D delta 100.0 2E-176 4E-181 1574.6 70.0 803 337-1149 4-868 (868)
2 PLN02270 phospholipase D alpha 100.0 2E-166 3E-171 1490.9 67.5 787 343-1149 4-808 (808)
3 PLN02352 phospholipase D epsil 100.0 7E-160 1E-164 1432.8 66.1 742 341-1149 4-758 (758)
4 KOG1329 Phospholipase D1 [Lipi 100.0 2E-143 4E-148 1281.6 53.7 752 336-1149 65-853 (887)
5 PLN02866 phospholipase D 100.0 7.4E-94 1.6E-98 874.0 51.9 533 505-1129 320-1060(1068)
6 PRK12452 cardiolipin synthetas 100.0 8.7E-48 1.9E-52 461.2 34.4 335 507-1041 132-466 (509)
7 PRK01642 cls cardiolipin synth 100.0 1.5E-46 3.2E-51 449.6 36.6 331 507-1041 108-440 (483)
8 PRK11263 cardiolipin synthase 100.0 2.6E-45 5.7E-50 428.7 35.1 326 510-1041 3-328 (411)
9 COG1502 Cls Phosphatidylserine 100.0 1.4E-35 3E-40 351.3 34.1 337 512-1041 57-395 (438)
10 PRK09428 pssA phosphatidylseri 100.0 2.1E-33 4.6E-38 331.0 32.7 350 513-1041 23-396 (451)
11 PHA02820 phospholipase-D-like 100.0 3.3E-32 7.3E-37 319.8 31.6 325 545-1038 26-360 (424)
12 PHA03003 palmytilated EEV memb 100.0 4.3E-31 9.2E-36 306.5 29.9 318 545-1040 31-348 (369)
13 PLN02230 phosphoinositide phos 99.9 4.6E-26 1E-30 272.5 11.8 178 285-482 374-597 (598)
14 KOG0169 Phosphoinositide-speci 99.9 4.9E-26 1.1E-30 271.0 9.8 176 286-483 524-744 (746)
15 PLN02223 phosphoinositide phos 99.9 2.1E-25 4.6E-30 262.2 14.8 172 288-482 317-534 (537)
16 cd04015 C2_plant_PLD C2 domain 99.9 5.1E-24 1.1E-28 219.7 16.2 142 342-483 2-158 (158)
17 PLN02222 phosphoinositide phos 99.9 1.3E-24 2.9E-29 259.8 13.0 178 285-482 357-580 (581)
18 PLN02952 phosphoinositide phos 99.9 2.1E-24 4.5E-29 258.8 12.5 176 285-482 375-596 (599)
19 PLN02228 Phosphoinositide phos 99.9 2.5E-23 5.4E-28 248.3 12.2 180 286-485 340-563 (567)
20 cd04016 C2_Tollip C2 domain pr 99.9 8.7E-21 1.9E-25 187.2 15.2 118 346-482 1-121 (121)
21 PF12357 PLD_C: Phospholipase 99.8 5.9E-22 1.3E-26 174.4 5.7 72 1069-1140 2-73 (74)
22 KOG1264 Phospholipase C [Lipid 99.8 5.4E-21 1.2E-25 224.5 12.0 175 286-487 972-1193(1267)
23 cd08379 C2D_MCTP_PRT_plant C2 99.8 1.2E-19 2.5E-24 180.4 14.2 114 349-478 2-125 (126)
24 cd04013 C2_SynGAP_like C2 doma 99.8 2.9E-19 6.4E-24 181.3 15.3 123 347-489 11-145 (146)
25 cd04042 C2A_MCTP_PRT C2 domain 99.8 5.4E-19 1.2E-23 173.8 15.7 119 349-484 2-121 (121)
26 cd08682 C2_Rab11-FIP_classI C2 99.8 4E-19 8.7E-24 176.1 13.6 117 349-481 1-126 (126)
27 PRK05443 polyphosphate kinase; 99.8 4.8E-18 1E-22 209.1 24.6 274 541-1041 344-634 (691)
28 cd04019 C2C_MCTP_PRT_plant C2 99.8 5.8E-18 1.2E-22 173.3 14.7 123 349-487 2-136 (150)
29 cd08400 C2_Ras_p21A1 C2 domain 99.8 1.1E-17 2.4E-22 166.2 16.0 119 347-484 4-124 (126)
30 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 9.1E-18 2E-22 165.7 14.6 118 349-482 2-121 (121)
31 cd08681 C2_fungal_Inn1p-like C 99.8 5E-18 1.1E-22 165.9 12.3 116 347-482 1-118 (118)
32 TIGR03705 poly_P_kin polyphosp 99.8 2.4E-17 5.1E-22 201.9 21.1 273 542-1040 336-624 (672)
33 cd04022 C2A_MCTP_PRT_plant C2 99.7 1.3E-17 2.8E-22 165.5 13.6 120 348-484 1-127 (127)
34 cd08678 C2_C21orf25-like C2 do 99.7 3.7E-17 8E-22 162.2 14.7 122 349-487 1-124 (126)
35 cd08378 C2B_MCTP_PRT_plant C2 99.7 3E-17 6.5E-22 162.0 13.0 113 349-483 2-120 (121)
36 cd08377 C2C_MCTP_PRT C2 domain 99.7 5.9E-17 1.3E-21 158.3 14.7 118 347-483 1-119 (119)
37 cd04014 C2_PKC_epsilon C2 doma 99.7 6.7E-17 1.5E-21 161.5 15.2 126 344-484 1-130 (132)
38 cd08391 C2A_C2C_Synaptotagmin_ 99.7 7.8E-17 1.7E-21 157.6 13.8 120 347-482 1-121 (121)
39 cd04044 C2A_Tricalbin-like C2 99.7 6.9E-17 1.5E-21 158.7 13.4 121 347-484 2-124 (124)
40 cd04036 C2_cPLA2 C2 domain pre 99.7 8E-17 1.7E-21 158.0 13.6 113 349-482 2-117 (119)
41 cd04024 C2A_Synaptotagmin-like 99.7 1.3E-16 2.7E-21 157.9 14.2 120 347-482 1-128 (128)
42 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 1.8E-16 3.9E-21 156.3 14.5 117 349-481 2-120 (121)
43 KOG1030 Predicted Ca2+-depende 99.7 4.7E-17 1E-21 165.3 9.9 98 343-456 2-100 (168)
44 cd08376 C2B_MCTP_PRT C2 domain 99.7 2.5E-16 5.5E-21 153.4 14.6 112 349-483 2-115 (116)
45 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 1.8E-16 3.9E-21 158.2 13.5 120 348-483 1-133 (133)
46 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 2.7E-16 5.8E-21 155.1 14.3 118 348-481 1-123 (123)
47 cd08395 C2C_Munc13 C2 domain t 99.7 1.6E-16 3.4E-21 156.8 12.1 100 348-463 1-111 (120)
48 cd08373 C2A_Ferlin C2 domain f 99.7 4.5E-16 9.8E-21 154.4 14.3 117 353-489 2-122 (127)
49 cd08381 C2B_PI3K_class_II C2 d 99.7 2.3E-16 5.1E-21 155.9 11.4 101 346-462 12-121 (122)
50 cd04050 C2B_Synaptotagmin-like 99.7 3.8E-16 8.3E-21 150.0 11.8 97 349-463 2-101 (105)
51 cd04046 C2_Calpain C2 domain p 99.7 1.1E-15 2.5E-20 151.7 15.3 121 346-484 2-123 (126)
52 cd08375 C2_Intersectin C2 doma 99.7 1.1E-15 2.4E-20 154.0 14.5 114 347-482 15-135 (136)
53 cd08685 C2_RGS-like C2 domain 99.7 3.3E-16 7.1E-21 154.3 9.7 102 345-462 10-119 (119)
54 cd08688 C2_KIAA0528-like C2 do 99.6 6.4E-16 1.4E-20 149.8 11.0 100 349-464 1-109 (110)
55 cd08387 C2A_Synaptotagmin-8 C2 99.6 8.9E-16 1.9E-20 151.6 11.8 103 346-463 15-123 (124)
56 cd08677 C2A_Synaptotagmin-13 C 99.6 5.6E-16 1.2E-20 151.7 10.1 99 346-462 13-118 (118)
57 cd04010 C2B_RasA3 C2 domain se 99.6 1E-15 2.2E-20 156.4 12.3 103 349-468 2-126 (148)
58 cd08382 C2_Smurf-like C2 domai 99.6 1.7E-15 3.6E-20 149.9 13.2 116 349-480 2-122 (123)
59 cd08394 C2A_Munc13 C2 domain f 99.6 2E-15 4.3E-20 149.3 13.6 97 347-463 2-100 (127)
60 cd04045 C2C_Tricalbin-like C2 99.6 1.7E-15 3.6E-20 149.4 12.6 104 347-466 1-105 (120)
61 cd04028 C2B_RIM1alpha C2 domai 99.6 1.3E-15 2.7E-20 155.2 12.0 106 345-465 27-139 (146)
62 cd04051 C2_SRC2_like C2 domain 99.6 1.3E-15 2.7E-20 150.6 10.9 113 348-478 1-125 (125)
63 cd04029 C2A_SLP-4_5 C2 domain 99.6 2.1E-15 4.6E-20 149.7 12.3 102 346-462 14-124 (125)
64 cd08385 C2A_Synaptotagmin-1-5- 99.6 2.2E-15 4.7E-20 148.7 12.2 103 346-463 15-123 (124)
65 cd04027 C2B_Munc13 C2 domain s 99.6 3.6E-15 7.9E-20 148.3 13.5 114 348-480 2-127 (127)
66 cd04041 C2A_fungal C2 domain f 99.6 1.7E-15 3.8E-20 147.0 10.5 99 347-463 1-107 (111)
67 cd08393 C2A_SLP-1_2 C2 domain 99.6 1.9E-15 4E-20 150.1 11.0 102 347-463 15-125 (125)
68 cd04018 C2C_Ferlin C2 domain t 99.6 3.3E-15 7.2E-20 153.0 12.1 114 348-465 1-126 (151)
69 cd04043 C2_Munc13_fungal C2 do 99.6 1.1E-14 2.3E-19 144.1 14.7 113 348-483 2-121 (126)
70 cd04030 C2C_KIAA1228 C2 domain 99.6 4.6E-15 1E-19 146.8 11.6 101 347-462 16-126 (127)
71 cd08383 C2A_RasGAP C2 domain ( 99.6 1.3E-14 2.7E-19 141.3 14.4 112 349-482 2-117 (117)
72 cd04017 C2D_Ferlin C2 domain f 99.6 1.6E-14 3.5E-19 145.1 15.1 118 348-485 2-134 (135)
73 cd04039 C2_PSD C2 domain prese 99.6 5.9E-15 1.3E-19 143.0 11.5 96 347-454 1-99 (108)
74 cd04040 C2D_Tricalbin-like C2 99.6 8.3E-15 1.8E-19 142.4 12.5 105 349-468 1-107 (115)
75 cd04031 C2A_RIM1alpha C2 domai 99.6 6.4E-15 1.4E-19 145.2 11.7 100 347-462 16-124 (125)
76 cd04049 C2_putative_Elicitor-r 99.6 7.9E-15 1.7E-19 144.8 12.0 101 347-463 1-107 (124)
77 cd08676 C2A_Munc13-like C2 dom 99.6 3.1E-15 6.6E-20 153.5 8.8 119 319-462 6-153 (153)
78 cd08386 C2A_Synaptotagmin-7 C2 99.6 9.8E-15 2.1E-19 144.1 12.1 102 347-463 16-124 (125)
79 KOG1265 Phospholipase C [Lipid 99.6 1.6E-15 3.5E-20 180.9 7.5 155 285-471 607-812 (1189)
80 cd08392 C2A_SLP-3 C2 domain fi 99.6 6.9E-15 1.5E-19 146.8 10.8 102 346-462 14-127 (128)
81 cd08521 C2A_SLP C2 domain firs 99.6 1.1E-14 2.4E-19 143.1 11.6 102 346-462 13-123 (123)
82 cd08384 C2B_Rabphilin_Doc2 C2 99.6 6.4E-15 1.4E-19 147.2 9.6 109 346-471 12-128 (133)
83 cd04011 C2B_Ferlin C2 domain s 99.6 1.7E-14 3.8E-19 139.8 12.0 97 348-464 5-110 (111)
84 cd04052 C2B_Tricalbin-like C2 99.6 1.5E-14 3.2E-19 140.6 11.4 97 383-485 13-111 (111)
85 cd08680 C2_Kibra C2 domain fou 99.6 9.9E-15 2.2E-19 144.9 10.2 102 346-462 13-124 (124)
86 cd08690 C2_Freud-1 C2 domain f 99.6 3.3E-14 7.2E-19 146.0 14.1 118 349-484 4-138 (155)
87 cd08390 C2A_Synaptotagmin-15-1 99.5 3.6E-14 7.8E-19 139.6 11.9 103 346-463 13-122 (123)
88 cd08404 C2B_Synaptotagmin-4 C2 99.5 2.1E-14 4.5E-19 144.4 10.4 108 346-470 14-129 (136)
89 cd08406 C2B_Synaptotagmin-12 C 99.5 1.2E-14 2.6E-19 146.6 8.5 109 346-471 14-130 (136)
90 cd08388 C2A_Synaptotagmin-4-11 99.5 4.1E-14 8.8E-19 141.2 12.1 102 347-463 16-127 (128)
91 cd08407 C2B_Synaptotagmin-13 C 99.5 8.9E-15 1.9E-19 147.8 7.2 111 346-471 14-132 (138)
92 cd08403 C2B_Synaptotagmin-3-5- 99.5 1.9E-14 4.1E-19 144.3 9.3 110 345-471 12-129 (134)
93 cd00275 C2_PLC_like C2 domain 99.5 1E-13 2.2E-18 137.0 14.3 116 348-482 3-127 (128)
94 cd08402 C2B_Synaptotagmin-1 C2 99.5 1.4E-14 2.9E-19 145.6 7.6 109 345-470 13-129 (136)
95 cd08389 C2A_Synaptotagmin-14_1 99.5 4.3E-14 9.3E-19 140.2 11.0 101 347-463 16-123 (124)
96 cd08675 C2B_RasGAP C2 domain s 99.5 4.8E-14 1.1E-18 142.3 11.3 101 349-465 1-121 (137)
97 cd04032 C2_Perforin C2 domain 99.5 4.6E-14 9.9E-19 140.7 10.9 88 347-451 28-118 (127)
98 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.5 4.2E-14 9.1E-19 146.7 10.7 103 345-462 25-136 (162)
99 cd08405 C2B_Synaptotagmin-7 C2 99.5 3.5E-14 7.7E-19 142.6 9.5 109 346-471 14-130 (136)
100 cd00138 PLDc Phospholipase D. 99.5 1.7E-13 3.7E-18 142.6 15.0 144 545-760 21-169 (176)
101 cd04026 C2_PKC_alpha_gamma C2 99.5 7.1E-14 1.5E-18 139.4 11.1 107 344-466 10-123 (131)
102 cd04038 C2_ArfGAP C2 domain pr 99.5 8.4E-14 1.8E-18 141.9 11.7 93 347-456 2-95 (145)
103 cd00276 C2B_Synaptotagmin C2 d 99.5 3.6E-14 7.8E-19 141.3 8.4 107 347-470 14-128 (134)
104 cd08692 C2B_Tac2-N C2 domain s 99.5 6.4E-14 1.4E-18 140.4 10.0 110 346-471 13-130 (135)
105 cd08410 C2B_Synaptotagmin-17 C 99.5 5.3E-14 1.1E-18 141.5 8.1 108 346-470 13-129 (135)
106 cd04021 C2_E3_ubiquitin_ligase 99.5 3.6E-13 7.7E-18 133.8 13.6 116 348-480 3-124 (125)
107 cd04048 C2A_Copine C2 domain f 99.5 1.6E-13 3.6E-18 134.8 11.0 98 352-464 5-114 (120)
108 cd04009 C2B_Munc13-like C2 dom 99.5 1.2E-13 2.6E-18 138.5 10.1 91 347-452 16-118 (133)
109 cd08409 C2B_Synaptotagmin-15 C 99.5 9.5E-14 2.1E-18 140.1 8.7 108 347-470 15-130 (137)
110 KOG0696 Serine/threonine prote 99.5 2E-14 4.3E-19 161.4 4.1 106 347-468 180-293 (683)
111 cd08691 C2_NEDL1-like C2 domai 99.5 5.3E-13 1.2E-17 134.8 13.7 114 349-480 3-136 (137)
112 PHA02820 phospholipase-D-like 99.5 1.3E-12 2.8E-17 154.7 17.9 146 801-1037 5-150 (424)
113 cd04037 C2E_Ferlin C2 domain f 99.4 4.6E-13 1E-17 132.8 11.8 89 349-452 2-93 (124)
114 PLN03200 cellulose synthase-in 99.4 2.5E-13 5.4E-18 179.8 11.6 122 345-484 1978-2101(2102)
115 cd08408 C2B_Synaptotagmin-14_1 99.4 2.4E-13 5.1E-18 137.5 8.8 109 346-470 14-131 (138)
116 cd04035 C2A_Rabphilin_Doc2 C2 99.4 7.6E-13 1.7E-17 130.5 11.9 100 347-461 15-122 (123)
117 cd08686 C2_ABR C2 domain in th 99.4 1.7E-12 3.7E-17 127.0 12.3 79 349-448 1-91 (118)
118 KOG1028 Ca2+-dependent phospho 99.4 1.5E-12 3.4E-17 153.8 13.1 126 347-487 167-298 (421)
119 cd00138 PLDc Phospholipase D. 99.4 9.5E-12 2.1E-16 129.5 14.5 130 840-1039 20-152 (176)
120 PRK13912 nuclease NucT; Provis 99.3 3.3E-11 7.3E-16 126.9 16.6 140 545-760 33-174 (177)
121 PRK13912 nuclease NucT; Provis 99.3 2.4E-11 5.2E-16 128.0 14.1 128 840-1041 32-160 (177)
122 PHA03003 palmytilated EEV memb 99.3 1.8E-11 3.8E-16 143.1 14.3 141 546-760 217-363 (369)
123 cd04047 C2B_Copine C2 domain s 99.3 1.5E-11 3.3E-16 118.8 10.8 87 351-453 4-101 (110)
124 PRK12452 cardiolipin synthetas 99.3 2.3E-11 4.9E-16 147.4 13.1 153 514-760 328-480 (509)
125 KOG1011 Neurotransmitter relea 99.2 1E-11 2.3E-16 144.1 8.5 125 348-491 296-434 (1283)
126 KOG2059 Ras GTPase-activating 99.2 1.2E-11 2.6E-16 146.6 9.1 125 348-490 6-132 (800)
127 PF00168 C2: C2 domain; Inter 99.2 1.6E-11 3.6E-16 111.1 7.7 81 349-444 1-85 (85)
128 PF13091 PLDc_2: PLD-like doma 99.2 1.2E-10 2.7E-15 114.4 10.6 114 846-1040 1-114 (126)
129 KOG3603 Predicted phospholipas 99.2 1.1E-08 2.3E-13 117.3 26.7 341 546-1039 73-419 (456)
130 cd00030 C2 C2 domain. The C2 d 99.1 2.3E-10 4.9E-15 104.9 10.5 99 349-462 1-102 (102)
131 smart00239 C2 Protein kinase C 99.1 2.9E-10 6.3E-15 105.1 10.7 93 348-455 1-97 (101)
132 COG5038 Ca2+-dependent lipid-b 99.1 3.3E-10 7.1E-15 141.2 11.8 133 345-496 434-570 (1227)
133 PF13091 PLDc_2: PLD-like doma 99.1 9.4E-10 2E-14 108.2 11.3 124 550-757 1-126 (126)
134 COG5038 Ca2+-dependent lipid-b 99.1 3.9E-10 8.4E-15 140.6 10.4 128 340-484 1033-1162(1227)
135 KOG1028 Ca2+-dependent phospho 99.0 9E-10 2E-14 130.5 8.2 109 346-471 297-413 (421)
136 KOG1328 Synaptic vesicle prote 99.0 9.1E-11 2E-15 138.5 -0.8 149 317-488 90-306 (1103)
137 PRK01642 cls cardiolipin synth 98.9 6.7E-09 1.5E-13 125.7 13.0 152 514-760 302-454 (483)
138 cd08374 C2F_Ferlin C2 domain s 98.9 5.9E-09 1.3E-13 104.7 10.1 93 349-454 2-125 (133)
139 PRK11263 cardiolipin synthase 98.9 1.8E-08 3.9E-13 119.3 14.4 133 841-1039 18-154 (411)
140 PRK05443 polyphosphate kinase; 98.8 2.5E-08 5.4E-13 124.0 13.2 119 844-1041 351-481 (691)
141 cd08689 C2_fungal_Pkc1p C2 dom 98.8 1.8E-08 3.9E-13 96.2 8.4 85 349-452 1-88 (109)
142 KOG1031 Predicted Ca2+-depende 98.8 1.9E-08 4.1E-13 116.5 8.9 123 345-485 1-138 (1169)
143 smart00149 PLCYc Phospholipase 98.7 2.3E-09 4.9E-14 104.6 -1.4 58 286-350 41-101 (115)
144 KOG3603 Predicted phospholipas 98.7 1.4E-07 3E-12 108.3 12.6 157 546-761 277-440 (456)
145 PF00614 PLDc: Phospholipase D 98.6 8.6E-09 1.9E-13 75.6 1.0 27 662-696 2-28 (28)
146 cd08630 PI-PLCc_delta3 Catalyt 98.6 5.2E-09 1.1E-13 115.1 -0.8 57 286-349 196-255 (258)
147 cd08595 PI-PLCc_zeta Catalytic 98.6 6.6E-09 1.4E-13 114.0 -0.3 57 286-349 195-254 (257)
148 cd08633 PI-PLCc_eta2 Catalytic 98.6 6.5E-09 1.4E-13 113.6 -0.5 58 285-349 191-251 (254)
149 cd08592 PI-PLCc_gamma Catalyti 98.6 5.9E-09 1.3E-13 112.8 -0.9 57 286-349 167-226 (229)
150 cd08596 PI-PLCc_epsilon Cataly 98.6 6.3E-09 1.4E-13 114.0 -1.1 57 286-349 192-251 (254)
151 cd08597 PI-PLCc_PRIP_metazoa C 98.6 7.3E-09 1.6E-13 114.3 -0.7 57 286-349 198-257 (260)
152 cd08629 PI-PLCc_delta1 Catalyt 98.6 9.6E-09 2.1E-13 112.7 0.1 57 286-349 196-255 (258)
153 cd08627 PI-PLCc_gamma1 Catalyt 98.6 1.1E-08 2.4E-13 110.3 0.5 56 287-349 168-226 (229)
154 PRK09428 pssA phosphatidylseri 98.6 3.7E-07 8E-12 109.2 13.2 136 841-1039 35-178 (451)
155 cd08625 PI-PLCc_beta3 Catalyti 98.6 9.8E-09 2.1E-13 113.3 -0.1 57 286-349 196-255 (258)
156 cd08628 PI-PLCc_gamma2 Catalyt 98.6 8.5E-09 1.8E-13 113.1 -0.8 57 286-349 192-251 (254)
157 cd08624 PI-PLCc_beta2 Catalyti 98.6 8.8E-09 1.9E-13 113.3 -0.8 58 286-350 199-259 (261)
158 cd08631 PI-PLCc_delta4 Catalyt 98.6 8.8E-09 1.9E-13 113.1 -0.9 57 286-349 196-255 (258)
159 cd08632 PI-PLCc_eta1 Catalytic 98.5 9.7E-09 2.1E-13 112.1 -1.0 58 286-350 191-251 (253)
160 cd08594 PI-PLCc_eta Catalytic 98.5 1.2E-08 2.7E-13 109.9 -0.3 57 286-349 165-224 (227)
161 cd08626 PI-PLCc_beta4 Catalyti 98.5 1.3E-08 2.8E-13 111.8 -0.4 58 286-350 195-255 (257)
162 cd08623 PI-PLCc_beta1 Catalyti 98.5 1.6E-08 3.4E-13 111.2 -0.4 57 286-349 196-255 (258)
163 cd08599 PI-PLCc_plant Catalyti 98.5 2.1E-08 4.6E-13 108.7 -0.6 57 286-349 166-225 (228)
164 cd08591 PI-PLCc_beta Catalytic 98.5 2.7E-08 5.8E-13 109.3 -0.4 57 286-349 195-254 (257)
165 cd08598 PI-PLC1c_yeast Catalyt 98.5 2E-08 4.4E-13 108.9 -1.6 57 286-349 169-228 (231)
166 cd08558 PI-PLCc_eukaryota Cata 98.4 3.1E-08 6.7E-13 107.2 -0.7 57 286-349 164-223 (226)
167 cd08593 PI-PLCc_delta Catalyti 98.4 3.4E-08 7.3E-13 108.9 -0.4 57 286-349 195-254 (257)
168 smart00155 PLDc Phospholipase 98.4 3E-07 6.4E-12 67.7 3.4 26 997-1022 3-28 (28)
169 KOG1328 Synaptic vesicle prote 98.4 1.4E-07 3E-12 112.3 2.2 89 348-451 948-1048(1103)
170 PF00387 PI-PLC-Y: Phosphatidy 98.2 3.8E-08 8.3E-13 96.8 -5.8 54 287-347 44-100 (118)
171 COG1502 Cls Phosphatidylserine 98.2 6.9E-06 1.5E-10 98.1 11.7 136 547-760 272-409 (438)
172 KOG2059 Ras GTPase-activating 98.0 1.1E-05 2.4E-10 97.1 6.9 104 383-486 151-279 (800)
173 PF00614 PLDc: Phospholipase D 98.0 3.2E-06 7E-11 62.2 1.5 26 997-1022 3-28 (28)
174 KOG3964 Phosphatidylglycerolph 97.8 0.00056 1.2E-08 78.3 16.7 131 543-699 37-172 (469)
175 cd08683 C2_C2cd3 C2 domain fou 97.7 5.5E-05 1.2E-09 74.8 6.4 112 349-462 1-143 (143)
176 KOG0905 Phosphoinositide 3-kin 97.4 8.7E-05 1.9E-09 93.2 4.1 106 343-463 1520-1634(1639)
177 KOG1011 Neurotransmitter relea 97.4 0.00028 6.1E-09 83.7 7.8 100 348-463 1126-1236(1283)
178 KOG1013 Synaptic vesicle prote 97.4 0.00014 3E-09 81.7 4.9 98 348-462 234-339 (362)
179 TIGR03705 poly_P_kin polyphosp 97.4 0.0012 2.5E-08 82.8 13.5 119 844-1041 342-472 (672)
180 PF13918 PLDc_3: PLD-like doma 97.4 0.00058 1.3E-08 71.8 8.7 57 546-604 83-140 (177)
181 PLN02866 phospholipase D 97.3 0.00075 1.6E-08 86.2 10.6 60 841-907 344-403 (1068)
182 KOG1326 Membrane-associated pr 97.3 0.00014 3.1E-09 90.7 3.5 120 349-492 615-738 (1105)
183 PLN02964 phosphatidylserine de 97.2 0.0003 6.6E-09 87.1 4.5 102 345-468 52-157 (644)
184 smart00155 PLDc Phospholipase 97.1 0.00043 9.3E-09 51.0 2.7 25 663-695 3-27 (28)
185 KOG1013 Synaptic vesicle prote 97.1 0.00022 4.7E-09 80.1 1.7 125 348-488 94-234 (362)
186 PF07894 DUF1669: Protein of u 96.8 0.0071 1.5E-07 68.0 10.9 162 513-757 117-278 (284)
187 KOG2060 Rab3 effector RIM1 and 96.8 0.0014 3.1E-08 74.9 5.3 113 342-468 264-383 (405)
188 PF13090 PP_kinase_C: Polyphos 96.6 0.15 3.2E-06 59.0 19.4 137 545-755 18-160 (352)
189 PF07894 DUF1669: Protein of u 96.1 0.023 5E-07 64.0 9.6 131 840-1036 133-263 (284)
190 KOG1326 Membrane-associated pr 96.1 0.002 4.4E-08 80.8 1.2 99 348-463 207-316 (1105)
191 cd08684 C2A_Tac2-N C2 domain f 96.1 0.0048 1E-07 57.5 3.1 95 351-461 3-102 (103)
192 COG0855 Ppk Polyphosphate kina 95.6 0.81 1.8E-05 56.5 20.2 101 541-675 348-448 (696)
193 KOG3837 Uncharacterized conser 95.6 0.01 2.2E-07 68.6 4.0 118 348-483 368-503 (523)
194 PLN02352 phospholipase D epsil 95.4 0.045 9.7E-07 69.0 9.1 61 544-604 452-519 (758)
195 PF11495 Regulator_TrmB: Archa 95.4 0.068 1.5E-06 59.1 9.4 49 545-606 10-58 (233)
196 KOG1327 Copine [Signal transdu 95.2 0.034 7.3E-07 67.2 6.6 98 353-467 142-250 (529)
197 PF10358 NT-C2: N-terminal C2 95.1 0.34 7.3E-06 49.1 12.9 119 348-489 8-141 (143)
198 PF13918 PLDc_3: PLD-like doma 95.1 0.21 4.5E-06 52.9 11.3 55 843-911 84-144 (177)
199 cd00137 PI-PLCc Catalytic doma 94.9 0.0048 1E-07 69.9 -1.3 56 289-348 203-270 (274)
200 PF12416 DUF3668: Cep120 prote 94.9 0.23 5E-06 57.8 12.3 120 349-487 2-136 (340)
201 cd08398 C2_PI3K_class_I_alpha 94.7 0.24 5.3E-06 51.7 10.6 108 342-485 3-124 (158)
202 KOG1329 Phospholipase D1 [Lipi 94.3 0.21 4.5E-06 63.5 10.5 63 537-604 558-627 (887)
203 COG3886 Predicted HKD family n 94.2 0.47 1E-05 50.5 11.4 141 544-759 38-179 (198)
204 cd08693 C2_PI3K_class_I_beta_d 93.5 0.52 1.1E-05 50.0 10.4 75 343-434 4-87 (173)
205 PLN03008 Phospholipase D delta 93.4 0.33 7.1E-06 61.9 10.2 69 536-604 557-633 (868)
206 PLN02270 phospholipase D alpha 93.0 0.42 9.1E-06 60.8 10.1 61 544-604 498-569 (808)
207 cd04012 C2A_PI3K_class_II C2 d 91.7 1.5 3.3E-05 46.3 11.0 89 345-448 6-117 (171)
208 cd08380 C2_PI3K_like C2 domain 90.7 1.8 4E-05 44.8 10.3 87 347-449 8-106 (156)
209 PF15627 CEP76-C2: CEP76 C2 do 90.0 2.6 5.7E-05 43.9 10.6 103 383-486 34-153 (156)
210 cd08399 C2_PI3K_class_I_gamma 89.6 3.3 7.1E-05 44.2 11.3 124 343-486 6-141 (178)
211 cd08397 C2_PI3K_class_III C2 d 88.6 1.4 3.1E-05 46.1 7.7 66 383-448 30-105 (159)
212 KOG1452 Predicted Rho GTPase-a 86.7 1.1 2.4E-05 50.7 5.6 80 341-434 45-124 (442)
213 PF00792 PI3K_C2: Phosphoinosi 85.2 4 8.6E-05 41.7 8.6 67 384-450 3-85 (142)
214 PF15625 CC2D2AN-C2: CC2D2A N- 85.1 3.3 7.1E-05 43.7 8.1 69 383-451 37-107 (168)
215 cd08687 C2_PKN-like C2 domain 84.9 5.3 0.00012 38.1 8.3 84 383-482 9-92 (98)
216 PF13090 PP_kinase_C: Polyphos 82.8 2.9 6.2E-05 48.7 6.9 94 886-1041 51-151 (352)
217 PF14429 DOCK-C2: C2 domain in 82.0 4.3 9.2E-05 43.3 7.6 53 397-449 61-120 (184)
218 cd08695 C2_Dock-B C2 domains f 81.7 10 0.00022 40.9 10.2 51 397-447 55-111 (189)
219 KOG4269 Rac GTPase-activating 80.5 3.6 7.9E-05 52.4 7.0 120 341-489 753-888 (1112)
220 PF11618 DUF3250: Protein of u 80.3 9 0.00019 37.6 8.4 94 386-483 2-105 (107)
221 KOG1327 Copine [Signal transdu 77.6 4.8 0.0001 49.3 6.8 85 394-481 40-130 (529)
222 smart00142 PI3K_C2 Phosphoinos 76.5 13 0.00028 35.8 8.2 51 383-433 32-91 (100)
223 COG0855 Ppk Polyphosphate kina 74.9 8.8 0.00019 47.9 8.0 42 998-1041 437-485 (696)
224 COG3886 Predicted HKD family n 72.4 38 0.00082 36.6 11.0 52 840-910 38-90 (198)
225 cd08694 C2_Dock-A C2 domains f 71.6 12 0.00027 40.4 7.4 52 397-448 55-114 (196)
226 PF09565 RE_NgoFVII: NgoFVII r 67.1 5.6 0.00012 45.8 3.9 41 997-1039 79-124 (296)
227 cd08679 C2_DOCK180_related C2 65.6 15 0.00033 38.9 6.7 51 399-449 56-115 (178)
228 cd08696 C2_Dock-C C2 domains f 65.4 22 0.00047 38.2 7.6 39 396-434 55-96 (179)
229 KOG3964 Phosphatidylglycerolph 65.1 7.7 0.00017 45.7 4.5 54 841-910 39-92 (469)
230 PF06087 Tyr-DNA_phospho: Tyro 63.0 4.8 0.0001 49.0 2.5 42 994-1036 344-402 (443)
231 KOG0694 Serine/threonine prote 59.5 3.5 7.5E-05 51.6 0.5 84 383-468 28-113 (694)
232 cd08697 C2_Dock-D C2 domains f 55.2 42 0.00092 36.2 7.7 39 395-433 56-97 (185)
233 PF11495 Regulator_TrmB: Archa 53.6 24 0.00053 39.0 5.9 50 840-909 9-58 (233)
234 KOG1924 RhoA GTPase effector D 46.6 39 0.00086 43.0 6.5 13 439-451 707-719 (1102)
235 KOG2236 Uncharacterized conser 46.2 32 0.0007 41.5 5.5 12 47-58 453-464 (483)
236 PF06219 DUF1005: Protein of u 42.5 2.9E+02 0.0064 33.4 12.4 101 383-485 36-169 (460)
237 KOG3543 Ca2+-dependent activat 41.6 1.3E+02 0.0029 37.5 9.6 113 348-482 342-458 (1218)
238 PTZ00447 apical membrane antig 39.4 1.9E+02 0.004 34.0 9.9 110 348-484 59-172 (508)
239 cd05137 RasGAP_CLA2_BUD2 CLA2/ 38.9 34 0.00074 41.1 4.4 44 439-484 1-45 (395)
240 KOG0260 RNA polymerase II, lar 37.7 1.6E+02 0.0035 39.6 10.0 6 228-233 1455-1460(1605)
241 KOG0119 Splicing factor 1/bran 32.0 1.7E+02 0.0037 35.9 8.5 24 114-139 466-489 (554)
242 PF06415 iPGM_N: BPG-independe 31.1 1.2E+02 0.0026 33.8 6.6 53 548-608 14-72 (223)
243 KOG0917 Uncharacterized conser 30.6 2.7E+02 0.0059 31.7 9.1 32 85-116 246-277 (338)
244 PF07615 Ykof: YKOF-related Fa 27.5 1.6E+02 0.0035 27.4 5.9 69 514-604 3-72 (81)
245 KOG4849 mRNA cleavage factor I 26.5 1.3E+02 0.0028 35.1 6.0 21 83-103 314-334 (498)
246 KOG1120 Fe-S cluster biosynthe 22.0 36 0.00078 34.3 0.6 21 172-192 102-122 (134)
247 PF06087 Tyr-DNA_phospho: Tyro 20.9 66 0.0014 39.3 2.6 37 998-1037 101-141 (443)
No 1
>PLN03008 Phospholipase D delta
Probab=100.00 E-value=1.7e-176 Score=1574.57 Aligned_cols=803 Identities=57% Similarity=0.994 Sum_probs=730.4
Q ss_pred CCCcceeeeceEEEEEEEEeeCCCCCCCCCccccccccc---------------------------cCCCCCCCCcEEEE
Q 001126 337 KGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNS---------------------------QMNTKITSDPYVTI 389 (1149)
Q Consensus 337 ~~~~~~~LlhGtL~VtVieAk~L~~~D~~g~~~~~~~~k---------------------------~~~~~~~sDPYV~V 389 (1149)
+-++.+.||||+|.|||++|++|++||++.++++++|.. ++.+..++||||+|
T Consensus 4 ~~~~~~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I 83 (868)
T PLN03008 4 KVSEDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTV 83 (868)
T ss_pred ccccceEEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEE
Confidence 456788999999999999999999999877655555430 12235679999999
Q ss_pred EECCEEEeeeeeecCCCCCeeceEEEEEccCCCceEEEEEEEccCCCCcceeeEEEeceeeccCCceeeeEeeccCCCCC
Q 001126 390 AVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKP 469 (1149)
Q Consensus 390 ~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~~~~L~~~V~D~D~~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~ 469 (1149)
.+++++++||+|++++.||+|||+|.|.|+++...|.|+|+|+|.+++++||++.|||++|..|...+.|++|++.+|++
T Consensus 84 ~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp 163 (868)
T PLN03008 84 VVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKP 163 (868)
T ss_pred EECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCC
Confidence 99998888999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEeecccccccccCCCCCCCCCCCCCCCCCccccCCeeEecccccCCCCCCCcccccCCCccchhhHHHH
Q 001126 470 CKPGATLTLSIQYTPMERLSFYHRGVGEGPDYNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYD 549 (1149)
Q Consensus 470 ~~~~g~L~L~L~f~p~~~~~~~~~GV~~~~~y~gv~~t~~p~~~Gn~V~ly~dg~~~~~~~~~i~l~~g~~y~~~~~f~a 549 (1149)
.+.+++|+|+|+|+|+++++.|.+||+++++|.|+|.||||+|+||+|+||||+|++||++|.|.|++|+.|.+++||++
T Consensus 164 ~k~~~kl~v~lqf~pv~~~~~~~~gv~~~~~~~gvp~t~Fp~r~g~~VtlYqdAhv~d~~~p~i~l~~g~~y~~~rcwed 243 (868)
T PLN03008 164 PKAETAIFIDMKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWED 243 (868)
T ss_pred CCCCcEEEEEEEEEEccccccccccccCCcCCCCCCCccccCCCCCEeEEeccCCCCCCCCCccccCCCccccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccceEEEEeeccceeeEEeCCC--CchHHHHHHHHHHHHhcCCeEEEEEecCCCcccccccccccccccccH
Q 001126 550 ICNAISQAQRLIYITGWSVWHKVKLVRDAS--PALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDE 627 (1149)
Q Consensus 550 l~eAI~~Ak~sI~I~~W~~~p~i~L~r~~~--~~~g~rL~dlL~~kA~rGVkVrILVwD~~gs~~~~g~k~~g~m~~~~~ 627 (1149)
|++||++||++|||++||++++++|+|++. ...+.+|++||++||+|||+|+|||||+.+|...++++..|+|.++++
T Consensus 244 i~~AI~~Ak~~IyI~gWsl~~ei~L~R~~~~~~~~~~~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~~~~~~g~m~thde 323 (868)
T PLN03008 244 ICYAISEAHHMIYIVGWSIFHKIKLVRETKVPRDKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGTHDE 323 (868)
T ss_pred HHHHHHhhhheEEEeceeecceeEEecCCCCCCCCCccHHHHHHHHHHCCCEEEEEEecccccccccccccccccccccH
Confidence 999999999999999999999999999863 224689999999999999999999999999887777888999999999
Q ss_pred HHHHHhccCCcEEEEccCcccccccccccc-----------ccccccccccceEEecCCCCCCCccEEEEEcccccCCCC
Q 001126 628 ETRRVFKHSSVKVLLCPRIAGKRHSWAKQK-----------EVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGR 696 (1149)
Q Consensus 628 ~t~~~l~~~gV~v~l~p~~~~~~~~~~~~~-----------~~~~~~rHHQKiVVVD~~~~~~~r~~vAFVGGiNL~dgR 696 (1149)
+++++|+|++|.|.+||+..+...+|+++. ..+++|+||||+||||++.++++|+++|||||+|||+||
T Consensus 324 et~~~f~h~~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~~~r~~vAFvGGiDLc~gR 403 (868)
T PLN03008 324 ETRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDGR 403 (868)
T ss_pred HHHHhhcCCCeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCCCccceEEEEcceeccCCc
Confidence 999999999999999999877777777652 456789999999999998777789999999999999999
Q ss_pred CCCCCCCccccccccCCCCCCCCccccCCCCCCCCCCeeeeeeEEcCHHHHHHHHHHHHHHHhhcCCCC----ccccC-C
Q 001126 697 YDNPHHPLFRTLQTLHKDDYHNPTFTQGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHG----IKKLK-S 771 (1149)
Q Consensus 697 wDt~~H~l~~~~~~~~~~Dy~np~~~~~~~~~~pr~PWHDv~vrI~GPaa~Dl~~~F~qrWn~~t~~~~----~~~l~-~ 771 (1149)
|||+.|++++++++++.+||+|+++. +..+.|++||||+||+|+||||++|+.+|++||+++++... .++.. .
T Consensus 404 wDT~~H~l~~~l~t~~~~D~~np~~~--~~~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~aTg~~~~~~~~k~~~~~ 481 (868)
T PLN03008 404 YDTPEHRILHDLDTVFKDDFHNPTFP--AGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHW 481 (868)
T ss_pred cCCcCCCccccccccccccccCcccc--CCCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHHhhCcccccccccccccc
Confidence 99999999999999999999999874 44567899999999999999999999999999999987431 11111 2
Q ss_pred chhhhhhhccCCCccCCCC-------------CC--C-cccCCCCCcEEEEEeecCCCccccCCCChhhhcccccccCcc
Q 001126 772 GDDALLRIERIPGIIGISD-------------AP--S-VRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKN 835 (1149)
Q Consensus 772 ~~~~l~~~~~~p~~~~~~~-------------~p--~-~~~~~~~~~~vQvlRS~~~~s~~~~P~~p~~~~~~~l~~g~~ 835 (1149)
.++.++.+++++.++.+.. .+ . ....++++|.+|+|||++.|++++||+.+.++..++++|||+
T Consensus 482 ~~d~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~w~vQifRSId~~sa~g~P~~~~~~~~~~l~~gk~ 561 (868)
T PLN03008 482 QDDALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAKR 561 (868)
T ss_pred ccchhcchhhcccccCCCccccccccccccCCCCccCccccCCCCccccceeeecCchhhcCCCCCcchhhhhccccccc
Confidence 3556666666655443210 00 0 112567889999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCC
Q 001126 836 VLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVP 915 (1149)
Q Consensus 836 ~~~e~sI~~ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~aira~rgv~V~IVlP~~Peg~p 915 (1149)
..+|+||++||++||++||||||||||||+++++.|+++++.++.|+|+++|+++|+++++++++|+|+||+|+||||.+
T Consensus 562 ~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IViP~~peG~~ 641 (868)
T PLN03008 562 LVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVIPLWPEGDP 641 (868)
T ss_pred cchhhhHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEECCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHhhhhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCcc
Q 001126 916 TGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRF 995 (1149)
Q Consensus 916 ~~~s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~Lr~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 995 (1149)
.+++.|.|++|+++||+|||.+++++|+++|.+. +|.+|++|||||||+.... ..++..++....++++|++
T Consensus 642 ~sg~vq~Il~wq~~TM~~~~~~I~~~L~~~~~d~--~p~dyl~fy~L~~~e~~~~------~~~~~~~~~~~~a~~~rr~ 713 (868)
T PLN03008 642 KSGPVQEILYWQSQTMQMMYDVIAKELKAVQSDA--HPLDYLNFYCLGKREQLPD------DMPATNGSVVSDSYNFQRF 713 (868)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--CccCEEEEecccccccccC------CCCCCCCchhhhhhhccce
Confidence 9999999999999999999999999999988654 5889999999999987632 1233455566678889999
Q ss_pred cceeeeEEEEEeCeEEEEcccccccCCCCCCCCcceEEEEeCcchhhhhccCCCCchhHHHHHHHHHHHhCCCccccCCC
Q 001126 996 MIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYTWARMKRHPYGQIYGYRMSLWAEHLGYIEDCFGQP 1075 (1149)
Q Consensus 996 ~iYVHSKlmIVDD~~viIGSANiN~RSm~G~~DsEiav~i~dp~~~~~~~~~~~~g~i~~lR~~Lw~EHlG~~~~~~~~p 1075 (1149)
+||||||+|||||++++|||||||+|||.|+||+||++.++|+.++|+...+.++|+||+||++||+||||+.++.|.+|
T Consensus 714 ~IYvHsK~~ivDd~~~~iGSaN~n~RS~~~~Rd~E~~~~~~~~~~~~~~~~~~~rg~I~g~R~sLwaEHLG~~~~~~~~p 793 (868)
T PLN03008 714 MIYVHAKGMIVDDEYVLMGSANINQRSMAGTKDTEIAMGAYQPNHTWAHKGRHPRGQVYGYRMSLWAEHLGKTGDEFVEP 793 (868)
T ss_pred eEEEeeeEEEECCCEEEEeccccCHhhccCCCCceEeEEeccccccccccCcchhhHHHHHHHHHHHHHhCCCHHHccCC
Confidence 99999999999999999999999999999999999999999999998777778999999999999999999999999999
Q ss_pred cchhHHHHHhhhhhhhhhhhhhhhhcccccccccCcceeCCCCCccCCCCCCCCCCCCCccccccC-CCCcCCCC
Q 001126 1076 ETLECVRKVRSVGENNWQQFAADDQSEMRSHLIKYPVEVDRKGKVRPIPGYETFPDVGGNIVGSFF-AIQENLTI 1149 (1149)
Q Consensus 1076 ~s~~~~~~~~~~~~~nw~~~a~~~~~~~~ghL~~~p~~~~~~g~~~~~~g~~~fpd~~~~i~g~~~-~~~~~~~~ 1149 (1149)
++++||+++|++|++||++|+++++.+|+|||++||+.|+.+|+|++|||+|+||||+|+|+|++. +||++|||
T Consensus 794 ~s~ecv~~vn~~a~~~w~~y~~~~~~~~~ghl~~yp~~v~~~g~v~~l~g~~~fpd~~~~v~g~~~~~lp~~ltt 868 (868)
T PLN03008 794 SDLECLKKVNTISEENWKRFIDPKFSELQGHLIKYPLQVDVDGKVSPLPDYETFPDVGGKIIGAHSMALPDTLTT 868 (868)
T ss_pred CCHHHHHHHHHHHHHHHHHhhccccccCCcccccCceEecCCCcEeeCCCCCcCCCCCCceeccccccCCccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999995 89999997
No 2
>PLN02270 phospholipase D alpha
Probab=100.00 E-value=1.6e-166 Score=1490.91 Aligned_cols=787 Identities=46% Similarity=0.837 Sum_probs=700.2
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCccccccccc---c-CCCCCCCCcEEEEEECCEEEeeeeeecC-CCCCeeceEEEEE
Q 001126 343 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNS---Q-MNTKITSDPYVTIAVAGAVVGRTFVISN-SEDPVWQQHFYVP 417 (1149)
Q Consensus 343 ~LlhGtL~VtVieAk~L~~~D~~g~~~~~~~~k---~-~~~~~~sDPYV~V~l~g~~~~rTkVi~n-t~nPvWNE~F~f~ 417 (1149)
.||||+|+|||++|++|++++. .+.+++++.. . ...+.++||||+|.+++++++||+|+.| ..||+|||+|.++
T Consensus 4 ~llhg~l~~~i~ea~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~ 82 (808)
T PLN02270 4 ILLHGTLHATIYEVDKLHSGGG-PGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIY 82 (808)
T ss_pred eeeecceEEEEEEcccCCCcch-hhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEe
Confidence 4899999999999999998654 2223332221 0 1124568999999999999999999998 4699999999999
Q ss_pred ccCCCceEEEEEEEccCCCCcceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEEEEEeecccccccccCCCCC
Q 001126 418 VAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLSFYHRGVGE 497 (1149)
Q Consensus 418 v~~~~~~L~~~V~D~D~~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f~p~~~~~~~~~GV~~ 497 (1149)
|+|..+.|.|+|+|.|.++..+||.+.||+++|..|..+++||+|++.+|||++++.+|+|+|+|+|++.++.|.+||++
T Consensus 83 ~ah~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~~~~~~gv~~ 162 (808)
T PLN02270 83 CAHMASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKDRNWGRGIRS 162 (808)
T ss_pred eccCcceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcccCcchhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred CCCCCCCCCCCCccccCCeeEecccccCCCCCCCcccccCCCccchhhHHHHHHHHHHHhccceEEEEeeccceeeEEeC
Q 001126 498 GPDYNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRD 577 (1149)
Q Consensus 498 ~~~y~gv~~t~~p~~~Gn~V~ly~dg~~~~~~~~~i~l~~g~~y~~~~~f~al~eAI~~Ak~sI~I~~W~~~p~i~L~r~ 577 (1149)
++|.|+|.||||+|+||+||||||+|++|+++|.|.|++|+.|.++.||+++++||++||++|||++|+|+++|+|+|+
T Consensus 163 -~~~~gvp~t~f~~r~g~~vtlyqdahv~~~~~p~i~l~~g~~~~~~~cwedi~~AI~~Ar~~IyI~GW~~d~~i~LvRd 241 (808)
T PLN02270 163 -AKFPGVPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDAITNAKHLIYITGWSVYTEISLVRD 241 (808)
T ss_pred -cCcCCCCCcccccCCCCeeEEeccccCCCCCCCccccCCCcccchhhhHHHHHHHHHhhhcEEEEEEeecCCCceEecC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC---chHHHHHHHHHHHHhcCCeEEEEEecCCCcccccccccccccccccHHHHHHhccCCcEEEEccCccccccccc
Q 001126 578 ASP---ALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWA 654 (1149)
Q Consensus 578 ~~~---~~g~rL~dlL~~kA~rGVkVrILVwD~~gs~~~~g~k~~g~m~~~~~~t~~~l~~~gV~v~l~p~~~~~~~~~~ 654 (1149)
+.. +...+|+++|++||++||+|+||+||+.++... .+..|+|.|++++++++|++.+|+|+++|+......+++
T Consensus 242 ~~~p~~~~~~~LGeLLk~KA~eGV~V~iLvWDd~ts~~~--~k~~g~m~thd~~t~~~f~~~~V~~~L~~r~P~~~~~~~ 319 (808)
T PLN02270 242 SRRPKPGGDVTIGELLKKKASEGVRVLLLVWDDRTSVDL--LKKDGLMATHDEETENFFRGTDVHCILCPRNPDDGGSIV 319 (808)
T ss_pred CCCCCCCCcchHHHHHHHHhcCCCEEEEEEEcCcccchh--hccccccccCHHHHHHHhccCCceEEEcCCCccccccee
Confidence 532 245799999999999999999999999887644 356789999999999999999999999998776556666
Q ss_pred cccccccccccccceEEecCCCCC---CCccEEEEEcccccCCCCCCCCCCCccccccccCCCCCCCCccccC-CCCCCC
Q 001126 655 KQKEVGTIYTHHQKTVIVDADAGY---NRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTQG-NTTGCP 730 (1149)
Q Consensus 655 ~~~~~~~~~rHHQKiVVVD~~~~~---~~r~~vAFVGGiNL~dgRwDt~~H~l~~~~~~~~~~Dy~np~~~~~-~~~~~p 730 (1149)
++..+++.++||||+||||++.++ ++|+++|||||+|||+|||||++|++|+++++.|++||+||.|... ...+.|
T Consensus 320 ~~~~~~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~GRWDT~~H~lf~~Ldt~h~~Df~~p~~~~~~~~~g~P 399 (808)
T PLN02270 320 QDLQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFTGASITKGGP 399 (808)
T ss_pred eccccccccccceeEEEEccCCccccccccceEEEEcceeccCCcccCccccccccccccccccccCcccccccccCCCC
Confidence 666677889999999999997543 4799999999999999999999999999999999999999988532 256789
Q ss_pred CCCeeeeeeEEcCHHHHHHHHHHHHHHHhhcCCCCccccCCchhhhhhhccCCCccCCCCCCCcccCCCCCcEEEEEeec
Q 001126 731 REPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSI 810 (1149)
Q Consensus 731 r~PWHDv~vrI~GPaa~Dl~~~F~qrWn~~t~~~~~~~l~~~~~~l~~~~~~p~~~~~~~~p~~~~~~~~~~~vQvlRS~ 810 (1149)
|+||||+||+|+||+|++|+.+|++||+.++++.. +....++..+..+. .+...+.+.++|.||+|||+
T Consensus 400 r~PWhDvh~rVeGPaa~dL~~~F~~rW~~atg~~l----------l~~~~~~~~~~~P~-~~~~~p~d~~~w~VQvfRSi 468 (808)
T PLN02270 400 REPWHDIHSRLEGPIAWDVLFNFEQRWSKQGGKDI----------LVQLRELEDVIIPP-SPVMFPDDHEVWNVQLFRSI 468 (808)
T ss_pred CCCeEEEEEEEECHHHHHHHHHHHHHHHhhcCccc----------hhhhcccccccCCC-CcccCCCcCCccccceeecc
Confidence 99999999999999999999999999999887531 11111111111011 11112345678999999999
Q ss_pred CCCccccCCCChhhhcccccccCcccchhhHHHHHHHHHHHhhccEEEEEEeeeecCCCCcccc----cccCcCCccHHH
Q 001126 811 DSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSY----RDLGANNLIPME 886 (1149)
Q Consensus 811 ~~~s~~~~P~~p~~~~~~~l~~g~~~~~e~sI~~ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~----~~~g~~n~I~~~ 886 (1149)
+.+++++||..|.++..+++++|++..++++|+.+|++||++||||||||||||+++++.|+.+ ++.++.|+||++
T Consensus 469 d~g~a~~~P~~~~~~~~~~lv~g~~~~~~rsI~~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~e 548 (808)
T PLN02270 469 DGGAAFGFPETPEAAAEAGLVSGKDNIIDRSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKE 548 (808)
T ss_pred cchhhccCCCCcchhhhcceeccCCCchhhHHHHHHHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchHH
Confidence 9999999999999888889999998888999999999999999999999999999999999765 788999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEEecCCCCCCCCCchhHHHHHHHHhhhhhHHHHHHHHHHHcCCceeecccccccccccCCcc
Q 001126 887 IALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNRE 966 (1149)
Q Consensus 887 ial~Ia~aira~rgv~V~IVlP~~Peg~p~~~s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~Lr~r~ 966 (1149)
|+++|+++|+++++|+|+||+|+||||.+++.++|.||+|+++||+||+.+++++|+++|+.. +|.+||+||||+|||
T Consensus 549 l~~kI~~ri~~~e~f~VyIViP~~peG~~e~~~vq~il~wq~~TM~~~~~~I~~~Lk~~g~~~--dp~dyL~ff~L~nre 626 (808)
T PLN02270 549 LSLKIVSKIEAGEKFTVYVVVPMWPEGIPESGSVQAILDWQRRTMEMMYKDVIQALRAKGLEE--DPRNYLTFFCLGNRE 626 (808)
T ss_pred HHHHHHHHHhCCCCCEEEEEECCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCccC--CccceEEEEeccccc
Confidence 999999999999999999999999999999999999999999999999999999999999753 688999999999999
Q ss_pred cccccCCCCCCCCCCCCchhhhhcccCcccceeeeEEEEEeCeEEEEcccccccCCCCCCCCcceEEEEeCcchhhhhcc
Q 001126 967 VIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYTWARMK 1046 (1149)
Q Consensus 967 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iYVHSKlmIVDD~~viIGSANiN~RSm~G~~DsEiav~i~dp~~~~~~~~ 1046 (1149)
.....+..+ ...+..++++..++++|+++||||||+|||||+|++|||||||+|||.|+|||||+|..++|.++.+.
T Consensus 627 ~~~~g~~~P-~~~~~~~~~~~~aq~~rr~~I~vH~K~~ivDd~~~~iGSaN~n~rS~~G~rDSEIam~a~qp~~~~~~-- 703 (808)
T PLN02270 627 VKKSGEYEP-SEKPEPDTDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLSTR-- 703 (808)
T ss_pred cccCcccCC-ccCCcccchhhhhhhccceeEEEeeeEEEEcCCEEEEeccccccccccCCccchhhhcccCccccccc--
Confidence 754322111 11233456677888999999999999999999999999999999999999999999999999877543
Q ss_pred CCCCchhHHHHHHHHHHHhCCCccccCCCcchhHHHHHhhhhhhhhhhhhhhhh-cccccccccCcceeCCCCCccCCCC
Q 001126 1047 RHPYGQIYGYRMSLWAEHLGYIEDCFGQPETLECVRKVRSVGENNWQQFAADDQ-SEMRSHLIKYPVEVDRKGKVRPIPG 1125 (1149)
Q Consensus 1047 ~~~~g~i~~lR~~Lw~EHlG~~~~~~~~p~s~~~~~~~~~~~~~nw~~~a~~~~-~~~~ghL~~~p~~~~~~g~~~~~~g 1125 (1149)
..++++|++||++||+||||+.++.|.+|+|++||++||+++++||++|+++++ .+|+|||++||+.|+.+|+|++|||
T Consensus 704 ~~~r~~i~~~R~~Lw~EHLG~~~~~f~~p~s~~cv~~v~~~a~~~w~~y~~~~~~~~~~ghl~~yp~~v~~~g~v~~l~g 783 (808)
T PLN02270 704 QPARGQIHGFRMSLWYEHLGMLDETFLDPESEECIQKVNQIADKYWDLYSSETLEHDLPGHLLRYPIGVASEGDITELPG 783 (808)
T ss_pred cchHHHHHHHHHHHHHHHhCCChhHhhCCCcHHHHHHHHHHHHHHHHHhcccccCCCCCcccccCceEecCCCcEeeCCC
Confidence 367899999999999999999999999999999999999999999999999999 5899999999999999999999999
Q ss_pred CCCCCCCCCccccccC-CCCcCCCC
Q 001126 1126 YETFPDVGGNIVGSFF-AIQENLTI 1149 (1149)
Q Consensus 1126 ~~~fpd~~~~i~g~~~-~~~~~~~~ 1149 (1149)
+|+||||+|+|+|++. .||++|||
T Consensus 784 ~~~fpd~~~~v~g~~~~~~p~~ltt 808 (808)
T PLN02270 784 TEFFPDTKARVLGAKSDYLPPILTT 808 (808)
T ss_pred CCcCCCCCCceeccccccCCccccC
Confidence 9999999999999995 89999997
No 3
>PLN02352 phospholipase D epsilon
Probab=100.00 E-value=6.6e-160 Score=1432.78 Aligned_cols=742 Identities=43% Similarity=0.738 Sum_probs=648.1
Q ss_pred ceeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccC
Q 001126 341 KVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1149)
Q Consensus 341 ~~~LlhGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~ 420 (1149)
+-.||||+|++||++|+-+. +.+.. ...+. ...||||+|.+++++++|| .+..||+|||+|.++|+|
T Consensus 4 ~~~~lhg~l~~~i~~~~~~~--~~~~~--~~~~~------~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah 70 (758)
T PLN02352 4 KQKFFHGTLEATIFDATPYT--PPFPF--NCIFL------NGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAH 70 (758)
T ss_pred cccccccceEEEEEEeeehh--hcccc--ccccc------CCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeee
Confidence 34589999999999999322 11110 00000 1149999999999999999 667799999999999999
Q ss_pred CC-ceEEEEEEEccCCCCcceeeEEEeceeeccCCc-eeeeEeeccCCCCCCCCCceeEEEEEeecccccccccCCCCCC
Q 001126 421 SA-AEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGK-VEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLSFYHRGVGEG 498 (1149)
Q Consensus 421 ~~-~~L~~~V~D~D~~~ddfIG~v~Ipl~~L~~G~~-~~~W~pL~~~~Gk~~~~~g~L~L~L~f~p~~~~~~~~~GV~~~ 498 (1149)
.. +.|.|+|+| +..+||.+.||+++|..|.. +++||+|++.+|||++. .+|+|+|+|+|+++++.|.+||.+
T Consensus 71 ~~~~~~~f~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~g~~~- 144 (758)
T PLN02352 71 PLDSTITITLKT----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-LKLRFMLWFRPAELEPTWCKILEN- 144 (758)
T ss_pred ecCCcEEEEEec----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-CEEEEEEEEEEhhhCcchhhcccC-
Confidence 98 799999999 58899999999999999966 99999999999999865 799999999999999999999976
Q ss_pred CCCCCCCCCCCccccCCeeEecccccCCCCCCCcccccCCCccchhhHHHHHHHHHHHhccceEEEEeeccceeeEEeCC
Q 001126 499 PDYNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDA 578 (1149)
Q Consensus 499 ~~y~gv~~t~~p~~~Gn~V~ly~dg~~~~~~~~~i~l~~g~~y~~~~~f~al~eAI~~Ak~sI~I~~W~~~p~i~L~r~~ 578 (1149)
++|.|+|.||||+|+||+|+||||+|++|+++|.|.+ .|.+.++|++|++||++||++|+|++|+|+++|+|+|++
T Consensus 145 ~~~~gvp~~~f~~r~g~~v~lyqdah~~~~~~p~i~l----~~~~~~~f~al~eAI~~Ar~sI~I~gW~~d~~i~L~R~~ 220 (758)
T PLN02352 145 GSFQGLRNATFPQRSNCHVILYQDAHHCSTFQPPVDL----CGSPRKLWEDVYKAIEGAKHLIYIAGWSFNPKMVLVRDP 220 (758)
T ss_pred CCcCCcCCcccccCCCCEEEEEecCCCccccCCccee----ecCHHHHHHHHHHHHHhhccEEEEEEEEecCCceeccCc
Confidence 6999999999999999999999999999999999988 578889999999999999999999999999999999986
Q ss_pred CC----chHHHHHHHHHHHHhcCCeEEEEEecCCCcccccccccccccccccHHHHHHhccCCcEEEEccCccccccccc
Q 001126 579 SP----ALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWA 654 (1149)
Q Consensus 579 ~~----~~g~rL~dlL~~kA~rGVkVrILVwD~~gs~~~~g~k~~g~m~~~~~~t~~~l~~~gV~v~l~p~~~~~~~~~~ 654 (1149)
.. +.+.+|+++|++||++||+||||+||+.++... ++..|+|.++++++.++|+|.+|+|+++|+...
T Consensus 221 ~~~~p~~~g~~LgdLLk~KA~eGV~VrLLvWDd~~s~~~--~~~~g~m~th~~~~~~~f~h~~V~~~l~pr~~~------ 292 (758)
T PLN02352 221 ETDIPHARGVKLGELLKRKAEEGVAVRVMLWDDETSLPI--IKNKGVMGTHDEDAFAYFKHTKVVCKLCPRLHK------ 292 (758)
T ss_pred ccccccccchHHHHHHHHHHHCCCEEEEEEEcCCCcccc--cccccccccchHHHHhhccCCceEEeecccccc------
Confidence 31 357999999999999999999999999887654 456788999999999999999999999987531
Q ss_pred cccccccccccccceEEecCCCCC--CCccEEEEEcccccCCCCCCCCCCCcccccccc-CCCCCCCCcccc-CCCCCCC
Q 001126 655 KQKEVGTIYTHHQKTVIVDADAGY--NRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTL-HKDDYHNPTFTQ-GNTTGCP 730 (1149)
Q Consensus 655 ~~~~~~~~~rHHQKiVVVD~~~~~--~~r~~vAFVGGiNL~dgRwDt~~H~l~~~~~~~-~~~Dy~np~~~~-~~~~~~p 730 (1149)
..++.|+||||+||||++.++ +.|+++|||||||||+|||||+.|++++++++. |++||+|+.|.. ..+.+.|
T Consensus 293 ---~~~~~~SHHQK~VVID~~~~~~~~~r~~vAFVGGIDLc~GRwDT~~H~l~d~l~t~~~~~Df~~~~~~g~~~~~g~P 369 (758)
T PLN02352 293 ---KFPTLFAHHQKTITVDTRANDSISEREIMSFVGGLDLCDGRYDTEEHSLFRTLNTESHCQDFYQTSIAGAKLQKGGP 369 (758)
T ss_pred ---ccccccccccceEEEccCCCCCccccceEEEEcceeccCCccCCccCCcccccccccccccccccccccccCCCCCC
Confidence 245679999999999997543 468889999999999999999999999999875 678999998862 2356789
Q ss_pred CCCeeeeeeEEcCHHHHHHHHHHHHHHHhhcCCCCccccCCchhhhhhhccCCCccCCCCCCCcccCCCCCcEEEEEeec
Q 001126 731 REPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSI 810 (1149)
Q Consensus 731 r~PWHDv~vrI~GPaa~Dl~~~F~qrWn~~t~~~~~~~l~~~~~~l~~~~~~p~~~~~~~~p~~~~~~~~~~~vQvlRS~ 810 (1149)
|+||||+||+|+||||+||++||+|||+++++... ++...+++.+..++. ....+.++|.||++||+
T Consensus 370 R~PWHDvh~~V~GpAA~Dv~~~F~qRW~~~~~~~~----------l~p~~~~~~~~~~p~---~~~~~~~~w~VQv~RSi 436 (758)
T PLN02352 370 REPWHDAHACIVGEAAWDVLTNFEQRWTKQCNPSV----------LVPTSSIRNLVHQPG---SSESNNRNWKVQVYRSI 436 (758)
T ss_pred CCCcEeEEEEEECHHHHHHHHHHHHHHhhccCccc----------cCCcccccccccCCC---CCcccCCcccceEEEec
Confidence 99999999999999999999999999999876431 111111111111110 11234678999999999
Q ss_pred CCCccccCCCChhhhcccccccCcccchhhHHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHH
Q 001126 811 DSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALK 890 (1149)
Q Consensus 811 ~~~s~~~~P~~p~~~~~~~l~~g~~~~~e~sI~~ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~ 890 (1149)
+.|++.+||.. ..+|+||++||++||++||||||||||||+++++.|+..++.++.|+|+++|+++
T Consensus 437 d~~sa~~~P~~--------------~~~erSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~k 502 (758)
T PLN02352 437 DHVSASHMPRN--------------LPVERSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALK 502 (758)
T ss_pred CccccccCCCC--------------CchhhHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHH
Confidence 99999988842 2358999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcEEEEEecCCCCCCCCCchhHHHHHHHHhhhhhHHHHHHHHHHHcCCceeecccccccccccCCcccccc
Q 001126 891 IADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQ 970 (1149)
Q Consensus 891 Ia~aira~rgv~V~IVlP~~Peg~p~~~s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~Lr~r~~~~~ 970 (1149)
|++|++++++|+|+||+|+||+|.+++.+.+.||+|+++||+|||.+|.++|+++|.+. +|++||+|||||||+....
T Consensus 503 I~~kir~~e~f~V~IViP~~PeG~~e~~~vq~il~wq~~TM~~~y~~I~~~L~~~g~~~--~P~dYl~F~cL~n~e~~~~ 580 (758)
T PLN02352 503 IASKIRAKERFAVYILIPMWPEGVPESEPVQDILHWTRETMAMMYKLIGEAIQESGEPG--HPRDYLNFFCLANREEKRK 580 (758)
T ss_pred HHHHHhCCCCCEEEEEECCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCccC--ChhHheeeecccccccccC
Confidence 99999999999999999999999999999999999999999999999999999998654 5999999999999997654
Q ss_pred cCCCCCCCCCCCCchhhhhcccCcccceeeeEEEEEeCeEEEEcccccccCCCCCCCCcceEEEEeCcchhhhhccCCCC
Q 001126 971 TDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYTWARMKRHPY 1050 (1149)
Q Consensus 971 ~~~~~~~~~~~~~~~~~~~~~~r~~~iYVHSKlmIVDD~~viIGSANiN~RSm~G~~DsEiav~i~dp~~~~~~~~~~~~ 1050 (1149)
.+... ...+..++.+..+++.++++||||||+|||||+++||||||||+|||.|+|||||+|+++|++++.. ....
T Consensus 581 g~~~~-~~~p~~~~~~~~~~~~rr~~IYVHSKlMIVDD~~viIGSANIN~RSM~G~rDSEia~~~~~~~~~~~---~~~~ 656 (758)
T PLN02352 581 GEFVP-PYSPHQKTQYWNAQKNRRFMVYVHSKLMIVDDTYILIGSANVNQRSMDGCRDTEIAIGCYQSKNGTN---TNNP 656 (758)
T ss_pred Ccccc-ccCCCCCchhhhcccccceeEEEeeeEEEEcCcEEEEcccccccccccCcccchhhhcccccccCCC---cccc
Confidence 33211 1222344455667788889999999999999999999999999999999999999999999986532 2456
Q ss_pred chhHHHHHHHHHHHhCCCccccCCCcchhHHHHHhhhhhhhhhhhhhhhhccccc-ccccCcceeCCCCCccCC-CCCCC
Q 001126 1051 GQIYGYRMSLWAEHLGYIEDCFGQPETLECVRKVRSVGENNWQQFAADDQSEMRS-HLIKYPVEVDRKGKVRPI-PGYET 1128 (1149)
Q Consensus 1051 g~i~~lR~~Lw~EHlG~~~~~~~~p~s~~~~~~~~~~~~~nw~~~a~~~~~~~~g-hL~~~p~~~~~~g~~~~~-~g~~~ 1128 (1149)
++|++||++||+||||+.++.|.+|+|++|++++|+++++||++|+++++.+|+| ||++||+.|+.+|+|++| ||+++
T Consensus 657 ~~i~~~R~~L~~EHLG~~~~~f~~p~s~ec~~~v~~~~~~~w~~y~~~~~~~~~g~hl~~yp~~v~~~g~v~~l~~g~~~ 736 (758)
T PLN02352 657 RDIQAYRMSLWYEHTGLDEESFLEPESLECVRRLRTIGEQMWEIYSGEEVVDMEGVHLVNYPISVTKDGAVEDLADGDGN 736 (758)
T ss_pred hHHHHHHHHHHHHHhCCCHHHhcCCCCHHHHHHHHHHHHHHHHhhccchhccCCCcccccCCeEecCCcceeecCCCCcC
Confidence 8999999999999999999999999999999999999999999999999999999 999999999999999999 69999
Q ss_pred CCCCCCccccccC-CCCcCCCC
Q 001126 1129 FPDVGGNIVGSFF-AIQENLTI 1149 (1149)
Q Consensus 1129 fpd~~~~i~g~~~-~~~~~~~~ 1149 (1149)
||||+|+|+|++. .||++|||
T Consensus 737 fpd~~~~v~g~~~~~~p~~lt~ 758 (758)
T PLN02352 737 FPDTKTPVKGRRSKMLPPVFTT 758 (758)
T ss_pred CCCCCCceeccccccCCccccC
Confidence 9999999999995 99999997
No 4
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=100.00 E-value=2e-143 Score=1281.62 Aligned_cols=752 Identities=50% Similarity=0.805 Sum_probs=668.4
Q ss_pred CCCCcceeeeceEEEEEEEEeeCCCCCCCCCccccccc---c-------------c----------cCCCCCCCCcEEEE
Q 001126 336 TKGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMF---N-------------S----------QMNTKITSDPYVTI 389 (1149)
Q Consensus 336 q~~~~~~~LlhGtL~VtVieAk~L~~~D~~g~~~~~~~---~-------------k----------~~~~~~~sDPYV~V 389 (1149)
......+.|+||+|+++|+++..+.+++.+..+.+..+ + + .+++..+.++|+++
T Consensus 65 ~~~~y~v~L~hG~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~e~Ylt~ 144 (887)
T KOG1329|consen 65 SSGSYTVELLHGTLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNINDNHDEKPSGPRSSLNSSMEKRKTLENYLTV 144 (887)
T ss_pred CCcceeeeeecCcEEEEEEecchhhhHHhHHHhhhhhcccccccccccccccccccCCCccCCcccchhhhhhccchhee
Confidence 34566778999999999999999986654332211110 0 0 11233446999999
Q ss_pred EECCEEEeeeeeecCC-CCCeeceEEEEEccCCCceEEEEEEEccCCC-CcceeeEEEeceeeccCCceeeeEeeccCCC
Q 001126 390 AVAGAVVGRTFVISNS-EDPVWQQHFYVPVAHSAAEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVLNGSG 467 (1149)
Q Consensus 390 ~l~g~~~~rTkVi~nt-~nPvWNE~F~f~v~~~~~~L~~~V~D~D~~~-ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~G 467 (1149)
.+...++.+|.++.+. .+|.|.+.|.+.+.+.+..+.++|.+.+..+ ..++|.+.+++..+..|...+.|+++++.++
T Consensus 145 ~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~~Il~~d~ 224 (887)
T KOG1329|consen 145 VLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWFPILDNDG 224 (887)
T ss_pred eechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccceeeeeccCC
Confidence 9999999999999886 9999999999999999999999999999988 8999999999999999999999999999999
Q ss_pred CCCCCCceeEEEEEeecccccccccCCCCCCCCCCCCCCCCCccccCCeeEecccccCCCCCCCcccccCCCc-cchhhH
Q 001126 468 KPCKPGATLTLSIQYTPMERLSFYHRGVGEGPDYNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMS-YVHGKC 546 (1149)
Q Consensus 468 k~~~~~g~L~L~L~f~p~~~~~~~~~GV~~~~~y~gv~~t~~p~~~Gn~V~ly~dg~~~~~~~~~i~l~~g~~-y~~~~~ 546 (1149)
++.+++..+.+.+.|.+.+.+..|..|+..++++.+++.++++++.||.|++|+|+|..+++.|.+.+++|++ |.++.|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~g~gv~~~qd~Hr~~sf~P~r~~~~~kw~vd~~~~ 304 (887)
T KOG1329|consen 225 KPHQKGSNESLRLGFTPMEKDRNLKLGCKSGRSFRGWPGTIFPQRKGCGVTLYQDAHRFDSFAPVRTLDGGKWFVDGKKY 304 (887)
T ss_pred ccccCCcccceEEeeEeechhhhhhheeccccccCCccceeeehhccCceeeeecccccCCcCCcccCCCceEEEchhhH
Confidence 9998888999999999999999999999999999999999999999999999999999999999999999996 555578
Q ss_pred HHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHHHHhcCCeEEEEEecCCCccccccccccccccccc
Q 001126 547 WYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHD 626 (1149)
Q Consensus 547 f~al~eAI~~Ak~sI~I~~W~~~p~i~L~r~~~~~~g~rL~dlL~~kA~rGVkVrILVwD~~gs~~~~g~k~~g~m~~~~ 626 (1149)
|++|++||++||+.|||++||++|+++|+|+...+.+.||+++||+||++||+|+|||||++++...+ ++++
T Consensus 305 ~edi~dAI~~Ar~~IyItgWwl~pel~L~Rp~~~~~~~rLdelLK~KAeeGVrV~ilv~kdv~s~~~i--------~S~~ 376 (887)
T KOG1329|consen 305 WEDVADAIENARREIYITGWWLSPELYLVRPPKGPNDWRLDELLKRKAEEGVRVLILVWKDVTSALGI--------NSHY 376 (887)
T ss_pred HHHHHHHHHhhhhEEEEeccccCceEEEEccCCCCCceEHHHHHHHHHhCCcEEEEEEeccchhcccc--------Cchh
Confidence 99999999999999999999999999999998766789999999999999999999999999875432 3677
Q ss_pred HHHHHHhccCCcEEEEccCccccccccccccccccccccccceEEecCCCCCCCccEEEEEcccccCCCCCCCCCCCccc
Q 001126 627 EETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFR 706 (1149)
Q Consensus 627 ~~t~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~rHHQKiVVVD~~~~~~~r~~vAFVGGiNL~dgRwDt~~H~l~~ 706 (1149)
++++.+++|++|+|++||+..++.. .++|+||||+||||++ +|||||+|||+|||||++|+|+|
T Consensus 377 ~k~~l~~lH~nV~vlr~P~~~~~~~--------~~~wtHHeK~VVVD~~--------v~fvGGlDLC~GRYDT~eH~L~d 440 (887)
T KOG1329|consen 377 EKTRLFFLHPNVKVLRCPRHPGSGP--------TTLWTHHEKLVVVDQE--------VAFVGGLDLCDGRYDTPEHPLFD 440 (887)
T ss_pred HHHHHhhcCCCeEEEECCCCcCCCC--------ceEEecceEEEEEcce--------eccccceeccccccCCccccccc
Confidence 8899999999999999998754321 3689999999999996 99999999999999999999999
Q ss_pred cccccCCCCCCCCcccc---CCCCCCCCCCeeeeeeEEcCHHHHHHHHHHHHHHHhhcCCCCccccCCchhhhhhhccCC
Q 001126 707 TLQTLHKDDYHNPTFTQ---GNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIP 783 (1149)
Q Consensus 707 ~~~~~~~~Dy~np~~~~---~~~~~~pr~PWHDv~vrI~GPaa~Dl~~~F~qrWn~~t~~~~~~~l~~~~~~l~~~~~~p 783 (1149)
+++++|++||+|++|.. .++.++||||||||||+|.||+|+||++||+||||++...+. .+++.+..+.+++
T Consensus 441 ~~~~~~gkDy~n~~~~~~~~~dr~~~PRmPWHDvh~~v~G~~ArDvarhF~QRWn~~~~~K~-----~~~~~~p~L~p~~ 515 (887)
T KOG1329|consen 441 TLQTWHGKDYHNPNFKDFVDIDRKGGPRMPWHDVHCKVDGPAARDVARHFEQRWNKQKREKK-----PYDDSLPLLLPIS 515 (887)
T ss_pred cccccccccccCcccccchhcccCCCCCCCceeeeeeeeChhHHHHHHHHHHHHHHHhcccC-----CCCccceeecChh
Confidence 99999999999999873 267899999999999999999999999999999999865321 1122222222333
Q ss_pred CccCCCCCCCcccCCCCCcEEEEEeecCCCccccCCCChhhhcccccccCcccchhhHHHHHHHHHHHhhccEEEEEEee
Q 001126 784 GIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQY 863 (1149)
Q Consensus 784 ~~~~~~~~p~~~~~~~~~~~vQvlRS~~~~s~~~~P~~p~~~~~~~l~~g~~~~~e~sI~~ayl~aI~~Ak~fIYIENQY 863 (1149)
++..++.. .+.+++.|.+|++||++.+++.+ ++.....++.|++...+|+||++||+++|++|||||||||||
T Consensus 516 ~~~~~~~~---~~~~~e~~~~q~f~si~~gs~~~----~qvlrs~g~wS~g~~~~e~SIq~AYv~~Ir~a~hFIYIENQf 588 (887)
T KOG1329|consen 516 DITGPSEP---NEEDPESWHVQVFRSIDGGSVAG----PQVLRSAGLWSGGINEIEDSIQNAYVKAIRNAEHFIYIENQF 588 (887)
T ss_pred hhcCCCCc---cccccccccccceeeccCCcccc----hHHhhhhcccccCCCchHHHHHHHHHHHHHhccceEEEeeee
Confidence 33222211 34667889999999999887654 667777889999988899999999999999999999999999
Q ss_pred eecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCC--CC--CCCCchhHHHHHHHHhhhhhHHHHHH
Q 001126 864 FIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWP--EG--VPTGAATQRILFWQHKTMQMMYETIY 939 (1149)
Q Consensus 864 Fi~~~~~w~~~~~~g~~n~I~~~ial~Ia~aira~rgv~V~IVlP~~P--eg--~p~~~s~~~il~~~~rTm~~~~~si~ 939 (1149)
|+++++.|. ...|.+.++|+++|++|+||++.|+||||||+|| || .++++++|+||+||+|||+|||++|+
T Consensus 589 Fi~ss~~~~-----~~~n~v~~ela~rIv~a~ra~e~frVYIVIPL~PgfEG~~~p~~~svqaIl~wQyrTms~g~~sI~ 663 (887)
T KOG1329|consen 589 FIGSSFNWD-----SVLNKVGDELALRIVKAIRAGEKFRVYIVIPLWPGFEGDDTPGSGSVQAILHWQYRTMSMGYKSIY 663 (887)
T ss_pred EEeeccCCC-----cccchHHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCCCCcchHHHHHHHHHHHHhhhHHHHH
Confidence 999987776 4567788999999999999999999999999999 88 78999999999999999999999999
Q ss_pred HHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCcccceeeeEEEEEeCeEEEEcccccc
Q 001126 940 KALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANIN 1019 (1149)
Q Consensus 940 ~~L~~~Gv~~~~~P~~Yl~f~~Lr~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iYVHSKlmIVDD~~viIGSANiN 1019 (1149)
++|++.|++- .+|.+|++|+|+++++.- +++.++||||||||+|||||+++||||||||
T Consensus 664 ~~Lka~g~d~-~~yi~f~~lr~~g~~e~~--------------------~~~~~~emIYVHsK~mIvDD~~vIIGSANIN 722 (887)
T KOG1329|consen 664 KALKAVGLDP-ADYIDFLGLRCLGNREEQ--------------------AQRLRREMIYVHSKLMIVDDEYVIIGSANIN 722 (887)
T ss_pred HHHHHhcCCc-cccceeeeeeeeeccccc--------------------cccceEEEEEEeeeeEEecCCEEEEeecccc
Confidence 9999999986 467888899999988641 2345789999999999999999999999999
Q ss_pred cCCCCCCCCcceEEEEeCcchhhhhccCCCCchhHHHHHHHHHHHhCCCccccCCCcchhHHHHHhhhhhhhhhhhhhhh
Q 001126 1020 QRSMEGTRDTEIAMGAYQPEYTWARMKRHPYGQIYGYRMSLWAEHLGYIEDCFGQPETLECVRKVRSVGENNWQQFAADD 1099 (1149)
Q Consensus 1020 ~RSm~G~~DsEiav~i~dp~~~~~~~~~~~~g~i~~lR~~Lw~EHlG~~~~~~~~p~s~~~~~~~~~~~~~nw~~~a~~~ 1099 (1149)
+|||.|+|||||||+++|+++++..+...++|++++|||+||+||||+.++.|.+|++++|++.++.+.+++|..+|+++
T Consensus 723 qRSm~G~RDSEIA~~~~d~~~~~s~m~g~p~~f~~~lR~slw~EHLG~~~d~~~~Pe~~ec~dpv~d~~~~~W~~~a~~n 802 (887)
T KOG1329|consen 723 QRSMLGNRDSEIAMGIYDTNHVWSKMNGRPYGFIYGLRMSLWREHLGLLDDAFEEPESLECEDPVRDLFEDLWQRYAARN 802 (887)
T ss_pred hhhccCCccceeEEEEecccchhhccCCcchhHHHHHHHHHHHHHhCCCcccccCcchhhhhhhHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccCcceeCCCCCccCCCCCCCCCCCCCcccccc-CCCCcCCCC
Q 001126 1100 QSEMRSHLIKYPVEVDRKGKVRPIPGYETFPDVGGNIVGSF-FAIQENLTI 1149 (1149)
Q Consensus 1100 ~~~~~ghL~~~p~~~~~~g~~~~~~g~~~fpd~~~~i~g~~-~~~~~~~~~ 1149 (1149)
.+.+.|||++||+++..+|++.+++|.+.|||+.|+|.|.+ .++|++||+
T Consensus 803 ~~~y~~~f~~yP~~~~~~g~~~~~~~~~~~pd~~~~~~~~~~~~~~~~lt~ 853 (887)
T KOG1329|consen 803 TTIYEGHFRCYPIDVVRTGKVTELPGDETFPDTLGKIIGSKSDALPENLTT 853 (887)
T ss_pred hhhhhceEEEcccccccCcceeecCCccccccccccccccccccCCccccc
Confidence 99999999999999999999999999999999999999997 699999986
No 5
>PLN02866 phospholipase D
Probab=100.00 E-value=7.4e-94 Score=874.03 Aligned_cols=533 Identities=31% Similarity=0.508 Sum_probs=410.7
Q ss_pred CCCCCccc----cCCeeEecccccCCCCCCCcccccCCCccchhhHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCC
Q 001126 505 PGTYFPLR----KGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASP 580 (1149)
Q Consensus 505 ~~t~~p~~----~Gn~V~ly~dg~~~~~~~~~i~l~~g~~y~~~~~f~al~eAI~~Ak~sI~I~~W~~~p~i~L~r~~~~ 580 (1149)
.++|+|.+ .||+|+||.||+ ++|++|++||++||++|+|++|||+|++||+|+..+
T Consensus 320 F~SFAP~r~~~~~gN~vk~LvDG~--------------------dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~D 379 (1068)
T PLN02866 320 FGSFAPPRGLTEDGSQAQWFIDGH--------------------AAFEAIASAIENAKSEIFITGWWLCPELYLRRPFHD 379 (1068)
T ss_pred CCCcCCCccccCCCCEEEEEeCHH--------------------HHHHHHHHHHHhcccEEEEEEccCCceEEEEecCCC
Confidence 46899999 699999999997 789999999999999999999999999999996434
Q ss_pred chHHHHHHHHHHHHhcCCeEEEEEecCCCcccccccccccccccccHHHHHHh--ccCCcEEEEccCccccccccccccc
Q 001126 581 ALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVF--KHSSVKVLLCPRIAGKRHSWAKQKE 658 (1149)
Q Consensus 581 ~~g~rL~dlL~~kA~rGVkVrILVwD~~gs~~~~g~k~~g~m~~~~~~t~~~l--~~~gV~v~l~p~~~~~~~~~~~~~~ 658 (1149)
..+.+|+++|++||++||+||||+||+++.....+ +..+++.+ .|+||+|..+|... + .
T Consensus 380 ~~g~RL~~lL~rKAkrGVkVrVLLyD~vg~al~~~----------S~~~k~~L~~lh~gI~V~r~P~~~----~-----~ 440 (1068)
T PLN02866 380 HESSRLDSLLEAKAKQGVQIYILLYKEVALALKIN----------SVYSKRRLLGIHENVKVLRYPDHF----S-----S 440 (1068)
T ss_pred chHHHHHHHHHHHHHCCCEEEEEEECccccccccC----------chhhHHHHHHhCCCeEEEecCccc----c-----c
Confidence 58899999999999999999999999976421111 11222222 47899998776521 0 1
Q ss_pred cccccccccceEEecCCCCCCCccEEEEEcccccCCCCCCCCCCCccccc-cccCCCCCCCCcccc-----------CCC
Q 001126 659 VGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTL-QTLHKDDYHNPTFTQ-----------GNT 726 (1149)
Q Consensus 659 ~~~~~rHHQKiVVVD~~~~~~~r~~vAFVGGiNL~dgRwDt~~H~l~~~~-~~~~~~Dy~np~~~~-----------~~~ 726 (1149)
..++||||||+||||++ +||+||+|||.|||||++|++.|.. ..|+++||.|++... .++
T Consensus 441 ~~ln~RhHRKIVVIDg~--------IAFvGGiNLc~GRWDT~~H~l~D~~~~~wPGkDY~Npr~~d~~~~~~~~~d~ldR 512 (1068)
T PLN02866 441 GVYLWSHHEKLVIVDYQ--------ICFIGGLDLCFGRYDTPEHRVGDCPPVIWPGKDYYNPRESEPNSWEDTMKDELDR 512 (1068)
T ss_pred CcccccCCCCeEEECCC--------EEEecCcccCCCccCCcccccccccccccCccccccccccccccccccccccccc
Confidence 23679999999999996 9999999999999999999998843 457899999986532 235
Q ss_pred CCCCCCCeeeeeeEEcCHHHHHHHHHHHHHHHhhcCCCCccc----c-C--------Cc--------------h------
Q 001126 727 TGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHGIKK----L-K--------SG--------------D------ 773 (1149)
Q Consensus 727 ~~~pr~PWHDv~vrI~GPaa~Dl~~~F~qrWn~~t~~~~~~~----l-~--------~~--------------~------ 773 (1149)
...+||||||+||+|+||||+||+++|++|||.+++.....+ | - .+ .
T Consensus 513 ~~~pRmPWHDV~~~V~GpAardLa~hFvqRWN~at~~k~~~~~~~~ll~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 592 (1068)
T PLN02866 513 RKYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRNKAPNEQAIPLLMPHHHMVIPHYLGGSEEEEIESKNQEDNQKGI 592 (1068)
T ss_pred ccCCCCCceEEEEEEECHHHHHHHHHHHHHHHHHhcccCccccccccccccccccccccccccccccccccccccccccc
Confidence 677899999999999999999999999999998875431100 0 0 00 0
Q ss_pred ---hhhh---hhccCCCccCC-------------------------------------CCCCC-----------------
Q 001126 774 ---DALL---RIERIPGIIGI-------------------------------------SDAPS----------------- 793 (1149)
Q Consensus 774 ---~~l~---~~~~~p~~~~~-------------------------------------~~~p~----------------- 793 (1149)
+... ....+|.+.+. +..|.
T Consensus 593 ~~~~~~~~~~~~~~~P~llP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 672 (1068)
T PLN02866 593 ARQDSFSSRSSLQDIPLLLPQEADATDGSGGGHKLNGMNSTNGSLSFSFRKSKIEPVLPDTPMKGFVDDLGFLDLSVKMS 672 (1068)
T ss_pred cccccccccccccccccCCCCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0000 00000000000 00000
Q ss_pred -----------------------------cccCCCCCcEEEEEeecCCCccccCCCChhhhcccccccCcccchhhHHHH
Q 001126 794 -----------------------------VRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHT 844 (1149)
Q Consensus 794 -----------------------------~~~~~~~~~~vQvlRS~~~~s~~~~P~~p~~~~~~~l~~g~~~~~e~sI~~ 844 (1149)
......+++.+||+||++.||+.. + .+|+||++
T Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~QivRS~~~WS~G~-~-----------------~~E~SI~~ 734 (1068)
T PLN02866 673 SAERGSKESDSEWWETQERGDQVGSADEVGQVGPRVSCRCQVIRSVSQWSAGT-S-----------------QVEESIHA 734 (1068)
T ss_pred ccccccccccccccccccccccccccccccccCCCCeEEEEEEeecccccCCC-C-----------------chHHHHHH
Confidence 000123468899999999998521 1 15889999
Q ss_pred HHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCC--C-CC--CCch
Q 001126 845 AYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPE--G-VP--TGAA 919 (1149)
Q Consensus 845 ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~aira~rgv~V~IVlP~~Pe--g-~p--~~~s 919 (1149)
||+++|++|+||||||||||+++.. .+..+.|+|+.+|+++|++|+++++.|+|+||||++|+ | .+ ++.+
T Consensus 735 AYi~~I~~A~hfIYIENQFFis~~~-----~~~~i~N~I~~AL~~RI~rA~~~~~~frviIViP~~P~F~G~v~~~~~~s 809 (1068)
T PLN02866 735 AYCSLIEKAEHFIYIENQFFISGLS-----GDDTIQNRVLEALYRRILRAHKEKKCFRVIIVIPLLPGFQGGVDDGGAAS 809 (1068)
T ss_pred HHHHHHHhcccEEEEeccccccccc-----ccccccchHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcCCCCCCccchh
Confidence 9999999999999999999998752 23567999999999999999999999999999999997 3 22 4467
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHc-CCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCcccce
Q 001126 920 TQRILFWQHKTMQMMYETIYKALVEV-GLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIY 998 (1149)
Q Consensus 920 ~~~il~~~~rTm~~~~~si~~~L~~~-Gv~~~~~P~~Yl~f~~Lr~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iY 998 (1149)
++.||+||++||++|+.+|+++|+++ |. +|.+|++|||||+++.+.... + -.+++||
T Consensus 810 vr~Im~~Q~~tI~rG~~Si~~~L~~~~g~----~p~dYisf~~LRn~~~l~~~~------------~------~vteqIY 867 (1068)
T PLN02866 810 VRAIMHWQYRTICRGKNSILHNLYDLLGP----KTHDYISFYGLRAYGRLFEGG------------P------LATSQIY 867 (1068)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhCC----CHHHeEeeecccccccccCCC------------c------ccceeeE
Confidence 99999999999999999999999985 54 478999999999987753110 0 1245899
Q ss_pred eeeEEEEEeCeEEEEcccccccCCCCCCCCcceEEEEeCcchhhhhccC---CCCchhHHHHHHHHHHHhCCCccc---c
Q 001126 999 VHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYTWARMKR---HPYGQIYGYRMSLWAEHLGYIEDC---F 1072 (1149)
Q Consensus 999 VHSKlmIVDD~~viIGSANiN~RSm~G~~DsEiav~i~dp~~~~~~~~~---~~~g~i~~lR~~Lw~EHlG~~~~~---~ 1072 (1149)
||||+|||||+++||||||||+|||.|++||||+|+++|++.....+.+ .+++++++||++||+||||+..+. +
T Consensus 868 VHsK~~IvDD~~~iiGSaNiN~RS~~G~rDsEia~~~~d~~~~~s~m~G~~~~ag~fa~~lR~~L~~EHLG~~~~~~~~~ 947 (1068)
T PLN02866 868 VHSKIMIVDDRAALIGSANINDRSLLGSRDSEIGVVIEDKEFVDSSMNGKPWKAGKFAHSLRLSLWSEHLGLRAGEIDKI 947 (1068)
T ss_pred EEeeEEEEcCcEEEEccccccccccccCcCcceeeeeecccccccccCCccccccchhHHHHHHHHHHHhCCCchhhhcc
Confidence 9999999999999999999999999999999999999999876544443 455789999999999999997643 4
Q ss_pred CCCcchhHHHH-Hhhhhhhhhh---------------------hhh----------------------------------
Q 001126 1073 GQPETLECVRK-VRSVGENNWQ---------------------QFA---------------------------------- 1096 (1149)
Q Consensus 1073 ~~p~s~~~~~~-~~~~~~~nw~---------------------~~a---------------------------------- 1096 (1149)
.+|-+-+.++. |+..|..|-. ++.
T Consensus 948 ~DP~~d~~~k~~W~~~A~~Nt~Iy~~vF~c~P~d~Vr~~~~~~~~~~~~~~~~gh~~i~lg~~~~~~~~~~~~~~~~~~~ 1027 (1068)
T PLN02866 948 IDPVCDTTYKDLWMATAKTNTDIYQDVFSCIPNDLIHSRAALRQSMASRKEKLGHTTIDLGIAPEKLESYENGDIKSSDP 1027 (1068)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccHHHHHHHhhhcccccCccccccccccccccccccccchhhhH
Confidence 56666455543 5665554431 111
Q ss_pred hhhhcccccccccCcceeCCCCCccCCCCCCCC
Q 001126 1097 ADDQSEMRSHLIKYPVEVDRKGKVRPIPGYETF 1129 (1149)
Q Consensus 1097 ~~~~~~~~ghL~~~p~~~~~~g~~~~~~g~~~f 1129 (1149)
.+++..++||||.||++|..++.++|.-+..+|
T Consensus 1028 ~~~l~~I~G~lV~fPL~Fl~~E~L~p~~~~~e~ 1060 (1068)
T PLN02866 1028 MERLKSVRGHLVSFPLDFMCQEDLRPVFNESEY 1060 (1068)
T ss_pred HHHHhhceEEEEechhhhhhhccCCCCcCccce
Confidence 245789999999999999999999887775554
No 6
>PRK12452 cardiolipin synthetase; Reviewed
Probab=100.00 E-value=8.7e-48 Score=461.22 Aligned_cols=335 Identities=26% Similarity=0.334 Sum_probs=255.4
Q ss_pred CCCccccCCeeEecccccCCCCCCCcccccCCCccchhhHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHH
Q 001126 507 TYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTL 586 (1149)
Q Consensus 507 t~~p~~~Gn~V~ly~dg~~~~~~~~~i~l~~g~~y~~~~~f~al~eAI~~Ak~sI~I~~W~~~p~i~L~r~~~~~~g~rL 586 (1149)
+.+|...||+|++|.||+ ++|++++++|++||++|+|++| +++++. .+..+
T Consensus 132 ~~~p~~~~n~~~ll~~g~--------------------~~~~~l~~~I~~Ak~~I~i~~y-------i~~~d~--~g~~i 182 (509)
T PRK12452 132 GGGPAADRTTTKLLTNGD--------------------QTFSEILQAIEQAKHHIHIQYY-------IYKSDE--IGTKV 182 (509)
T ss_pred cCCcccCCCEEEEeCCHH--------------------HHHHHHHHHHHHhCCEEEEEEE-------EEeCCc--HHHHH
Confidence 558899999999999997 7999999999999999999988 556664 78999
Q ss_pred HHHHHHHHhcCCeEEEEEecCCCcccccccccccccccccHHHHHHhccCCcEEEEccCccccccccccccccccccccc
Q 001126 587 GELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHH 666 (1149)
Q Consensus 587 ~dlL~~kA~rGVkVrILVwD~~gs~~~~g~k~~g~m~~~~~~t~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~rHH 666 (1149)
.++|++||+|||+||||+ |+.|+... .....+.|+++||+|..+.+.. .++. ....++|||
T Consensus 183 ~~aL~~aa~rGV~VRiL~-D~~Gs~~~------------~~~~~~~L~~aGi~v~~f~P~~---~~~~---~~~~n~RnH 243 (509)
T PRK12452 183 RDALIKKAKDGVIVRFLY-DGLGSNTL------------RRRFLQPMKEAGIEIVEFDPIF---SAWL---LETVNYRNH 243 (509)
T ss_pred HHHHHHHHHCCCEEEEEE-ECCCCCCC------------CHHHHHHHHhCCeEEEEecCcc---cccc---cccccCCCC
Confidence 999999999999999995 99887422 1245667889999998775432 1111 124689999
Q ss_pred cceEEecCCCCCCCccEEEEEcccccCCCCCCCCCCCccccccccCCCCCCCCccccCCCCCCCCCCeeeeeeEEcCHHH
Q 001126 667 QKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTQGNTTGCPREPWHDLHSKIDGPAA 746 (1149)
Q Consensus 667 QKiVVVD~~~~~~~r~~vAFVGGiNL~dgRwDt~~H~l~~~~~~~~~~Dy~np~~~~~~~~~~pr~PWHDv~vrI~GPaa 746 (1149)
||++|||++ +||+||+|+++++.. .. ....+|||+|++|+||+|
T Consensus 244 RKi~VIDg~--------ia~~GG~Ni~d~y~~-~~---------------------------~~~~~WrD~~~~i~Gp~V 287 (509)
T PRK12452 244 RKIVIVDGE--------IGFTGGLNVGDEYLG-RS---------------------------KKFPVWRDSHLKVEGKAL 287 (509)
T ss_pred CeEEEEcCC--------EEEeCCcccchhhcC-CC---------------------------CCCCCceEEEEEEECHHH
Confidence 999999997 999999999996442 10 124589999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCccccCCchhhhhhhccCCCccCCCCCCCcccCCCCCcEEEEEeecCCCccccCCCChhhhc
Q 001126 747 YDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEAT 826 (1149)
Q Consensus 747 ~Dl~~~F~qrWn~~t~~~~~~~l~~~~~~l~~~~~~p~~~~~~~~p~~~~~~~~~~~vQvlRS~~~~s~~~~P~~p~~~~ 826 (1149)
.+++..|.++|+.+++.... ..+.. ... +.. .+.. ....+...+|++.+.+ ..
T Consensus 288 ~~l~~~F~~dW~~~~~~~~~---~~~~~-~~~----~~~-----~~~~-~~~~~~~~~q~~~sgp--------~~----- 340 (509)
T PRK12452 288 YKLQAIFLEDWLYASSGLNT---YSWDP-FMN----RQY-----FPGK-EISNAEGAVQIVASGP--------SS----- 340 (509)
T ss_pred HHHHHHHHHHHHHhhCcccc---ccccc-ccc----hhc-----CCCc-cccCCCeEEEEEeCCC--------Cc-----
Confidence 99999999999987643100 00000 000 000 0000 0112334688887631 11
Q ss_pred ccccccCcccchhhHHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEE
Q 001126 827 SKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIV 906 (1149)
Q Consensus 827 ~~~l~~g~~~~~e~sI~~ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~aira~rgv~V~IV 906 (1149)
.+.+|+++|+++|++||++|||++|||+++. .+..+|..| +.+||+|+||
T Consensus 341 -----------~~~~i~~~~l~~I~~A~~~I~I~tpYf~pd~-----------------~l~~aL~~A--a~rGV~Vrii 390 (509)
T PRK12452 341 -----------DDKSIRNTLLAVMGSAKKSIWIATPYFIPDQ-----------------ETLTLLRLS--AISGIDVRIL 390 (509)
T ss_pred -----------hhHHHHHHHHHHHHHhhhEEEEECCccCCCH-----------------HHHHHHHHH--HHcCCEEEEE
Confidence 1358999999999999999999999999864 345555544 4699999999
Q ss_pred ecCCCCCCCCCchhHHHHHHHHhhhhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCchh
Q 001126 907 IPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPE 986 (1149)
Q Consensus 907 lP~~Peg~p~~~s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~Lr~r~~~~~~~~~~~~~~~~~~~~~ 986 (1149)
+|..+ ++.+++|+.+ ++++.|+++|+++++ |
T Consensus 391 ~p~~~--------D~~~~~~a~~-------~~~~~L~~aGv~I~~----y------------------------------ 421 (509)
T PRK12452 391 YPGKS--------DSIISDQASQ-------SYFTPLLKAGASIYS----Y------------------------------ 421 (509)
T ss_pred cCCCC--------ChHHHHHHHH-------HHHHHHHHcCCEEEE----e------------------------------
Confidence 99853 5666666554 578999999999864 1
Q ss_pred hhhcccCcccceeeeEEEEEeCeEEEEcccccccCCCCCCCCcceEEEEeCcchh
Q 001126 987 ALSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1041 (1149)
Q Consensus 987 ~~~~~~r~~~iYVHSKlmIVDD~~viIGSANiN~RSm~G~~DsEiav~i~dp~~~ 1041 (1149)
...++|+|+|||||++++|||+|||.||+. .|.|++++++|++.+
T Consensus 422 --------~~~~lHaK~~ivD~~~a~vGS~Nld~RS~~--~n~E~~~~i~~~~~~ 466 (509)
T PRK12452 422 --------KDGFMHAKIVLVDDKIATIGTANMDVRSFE--LNYEIISVLYESETV 466 (509)
T ss_pred --------cCCCeeeeEEEECCCEEEEeCcccCHhHhh--hhhhccEEEECHHHH
Confidence 025899999999999999999999999998 899999999998753
No 7
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=100.00 E-value=1.5e-46 Score=449.62 Aligned_cols=331 Identities=24% Similarity=0.395 Sum_probs=253.9
Q ss_pred CCCccccCCeeEecccccCCCCCCCcccccCCCccchhhHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHH
Q 001126 507 TYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTL 586 (1149)
Q Consensus 507 t~~p~~~Gn~V~ly~dg~~~~~~~~~i~l~~g~~y~~~~~f~al~eAI~~Ak~sI~I~~W~~~p~i~L~r~~~~~~g~rL 586 (1149)
+.+|...||+|++|.||+ ++|++|+++|++||++|+|++| +++++. .+.++
T Consensus 108 ~~~~~~~~n~v~ll~~g~--------------------~~~~~l~~~I~~Ak~~I~l~~y-------i~~~d~--~g~~i 158 (483)
T PRK01642 108 QGIPGLKGNQLRLLTNGD--------------------ETFQAIIRDIELARHYILMEFY-------IWRPDG--LGDQV 158 (483)
T ss_pred cCCCccCCCEEEEEcCHH--------------------HHHHHHHHHHHHhhcEEEEEEE-------EEccCC--cHHHH
Confidence 557899999999999997 7999999999999999999998 556654 78999
Q ss_pred HHHHHHHHhcCCeEEEEEecCCCcccccccccccccccccHHHHHHhccCCcEEEEc-cCcccccccccccccccccccc
Q 001126 587 GELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLC-PRIAGKRHSWAKQKEVGTIYTH 665 (1149)
Q Consensus 587 ~dlL~~kA~rGVkVrILVwD~~gs~~~~g~k~~g~m~~~~~~t~~~l~~~gV~v~l~-p~~~~~~~~~~~~~~~~~~~rH 665 (1149)
.++|++||+|||+|||| +|+.|+.... .....+.|++.||++..+ |... .++ .....++|+
T Consensus 159 ~~aL~~aa~rGV~VriL-~D~~Gs~~~~-----------~~~~~~~L~~~Gi~v~~~~p~~~---~~~---~~~~~n~Rn 220 (483)
T PRK01642 159 AEALIAAAKRGVRVRLL-YDSIGSFAFF-----------RSPYPEELRNAGVEVVEFLKVNL---GRV---FRRRLDLRN 220 (483)
T ss_pred HHHHHHHHHCCCEEEEE-EECCCCCCCC-----------cHHHHHHHHHCCCEEEEecCCCc---ccc---ccccccccc
Confidence 99999999999999999 5998875321 122556678899999987 4321 111 113467899
Q ss_pred ccceEEecCCCCCCCccEEEEEcccccCC-CCCCCCCCCccccccccCCCCCCCCccccCCCCCCCCCCeeeeeeEEcCH
Q 001126 666 HQKTVIVDADAGYNRRKIIAFVGGLDLCD-GRYDNPHHPLFRTLQTLHKDDYHNPTFTQGNTTGCPREPWHDLHSKIDGP 744 (1149)
Q Consensus 666 HQKiVVVD~~~~~~~r~~vAFVGGiNL~d-gRwDt~~H~l~~~~~~~~~~Dy~np~~~~~~~~~~pr~PWHDv~vrI~GP 744 (1149)
|+|++|||++ +||+||+|+++ +|.... ....+|||++++|+||
T Consensus 221 HrKi~VIDg~--------ia~~Gg~Ni~d~~y~~~~----------------------------~~~~~w~D~~~~i~Gp 264 (483)
T PRK01642 221 HRKIVVIDGY--------IAYTGSMNVVDPEYFKQD----------------------------PGVGQWRDTHVRIEGP 264 (483)
T ss_pred CceEEEEcCC--------EEEeCCcccCCHHHhCCC----------------------------CCCCCcEEEEEEEEcH
Confidence 9999999997 99999999999 544210 1235899999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCccccCCchhhhhhhccCCCccCCCCCCCcccCCCCCcEEEEEeecCCCccccCCCChhh
Q 001126 745 AAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKE 824 (1149)
Q Consensus 745 aa~Dl~~~F~qrWn~~t~~~~~~~l~~~~~~l~~~~~~p~~~~~~~~p~~~~~~~~~~~vQvlRS~~~~s~~~~P~~p~~ 824 (1149)
+|.++...|.++|+.+++... ... .+... ..+ ....+...+|++.+. |..+
T Consensus 265 ~v~~l~~~F~~dW~~~~~~~~---~~~----------~~~~~---~~~---~~~~~~~~~qi~~sg--------P~~~-- 315 (483)
T PRK01642 265 VVTALQLIFAEDWEWETGERI---LPP----------PPDVL---IMP---FEEASGHTVQVIASG--------PGDP-- 315 (483)
T ss_pred HHHHHHHHHHHHHHHHhCccc---CCC----------Ccccc---cCC---ccCCCCceEEEEeCC--------CCCh--
Confidence 999999999999998765310 000 00000 000 011223468888763 2211
Q ss_pred hcccccccCcccchhhHHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEE
Q 001126 825 ATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAY 904 (1149)
Q Consensus 825 ~~~~~l~~g~~~~~e~sI~~ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~aira~rgv~V~ 904 (1149)
+..|+++|+++|.+||++|||++|||+++. .+..+|..| +.+||+|+
T Consensus 316 --------------~~~~~~~~~~~I~~A~~~I~I~tpYfip~~-----------------~i~~aL~~A--a~rGV~Vr 362 (483)
T PRK01642 316 --------------EETIHQFLLTAIYSARERLWITTPYFVPDE-----------------DLLAALKTA--ALRGVDVR 362 (483)
T ss_pred --------------hhHHHHHHHHHHHHhccEEEEEcCCcCCCH-----------------HHHHHHHHH--HHcCCEEE
Confidence 347999999999999999999999999864 455555554 46999999
Q ss_pred EEecCCCCCCCCCchhHHHHHHHHhhhhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCc
Q 001126 905 IVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNT 984 (1149)
Q Consensus 905 IVlP~~Peg~p~~~s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~Lr~r~~~~~~~~~~~~~~~~~~~ 984 (1149)
||+|..+ ++.+++|+.+ ++++.|.++|++++. |
T Consensus 363 il~p~~~--------d~~~~~~~~~-------~~~~~L~~~Gv~I~~----y---------------------------- 395 (483)
T PRK01642 363 IIIPSKN--------DSLLVFWASR-------AFFTELLEAGVKIYR----Y---------------------------- 395 (483)
T ss_pred EEeCCCC--------CcHHHHHHHH-------HHHHHHHHcCCEEEE----e----------------------------
Confidence 9999864 4566666654 578899999999863 1
Q ss_pred hhhhhcccCcccceeeeEEEEEeCeEEEEcccccccCCCCCCCCcceEEEEeCcchh
Q 001126 985 PEALSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1041 (1149)
Q Consensus 985 ~~~~~~~~r~~~iYVHSKlmIVDD~~viIGSANiN~RSm~G~~DsEiav~i~dp~~~ 1041 (1149)
...++|+|+|||||++++|||+|||.||+. .|.|++++++|++++
T Consensus 396 ----------~~~~~HaK~~ivD~~~~~vGS~N~d~rS~~--~N~E~~~~i~d~~~~ 440 (483)
T PRK01642 396 ----------EGGLLHTKSVLVDDELALVGTVNLDMRSFW--LNFEITLVIDDTGFA 440 (483)
T ss_pred ----------CCCceEeEEEEECCCEEEeeCCcCCHhHHh--hhhcceEEEECHHHH
Confidence 024799999999999999999999999998 899999999998754
No 8
>PRK11263 cardiolipin synthase 2; Provisional
Probab=100.00 E-value=2.6e-45 Score=428.70 Aligned_cols=326 Identities=21% Similarity=0.305 Sum_probs=244.6
Q ss_pred ccccCCeeEecccccCCCCCCCcccccCCCccchhhHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHH
Q 001126 510 PLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGEL 589 (1149)
Q Consensus 510 p~~~Gn~V~ly~dg~~~~~~~~~i~l~~g~~y~~~~~f~al~eAI~~Ak~sI~I~~W~~~p~i~L~r~~~~~~g~rL~dl 589 (1149)
+.+.||+|+||.||+ ++|++++++|++||++|+|++|.| .++. .+..|.++
T Consensus 3 ~~~~gN~v~ll~~G~--------------------e~~~~l~~~I~~Ak~~I~i~~yi~-------~~d~--~g~~l~~a 53 (411)
T PRK11263 3 SWREGNRIQLLENGE--------------------QYYPRVFEAIAAAQEEILLETFIL-------FEDK--VGKQLHAA 53 (411)
T ss_pred cccCCCeEEEEeCHH--------------------HHHHHHHHHHHHhCCEEEEEEEEE-------ecCc--hHHHHHHH
Confidence 678899999999997 899999999999999999999843 4443 68999999
Q ss_pred HHHHHhcCCeEEEEEecCCCcccccccccccccccccHHHHHHhccCCcEEEEccCccccccccccccccccccccccce
Q 001126 590 LRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKT 669 (1149)
Q Consensus 590 L~~kA~rGVkVrILVwD~~gs~~~~g~k~~g~m~~~~~~t~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~rHHQKi 669 (1149)
|++||+|||+||||+ |..++... .....+.|.++||++..+.+.. .++ ......+.++|+|+
T Consensus 54 L~~aa~rGV~Vril~-D~~gs~~~------------~~~~~~~L~~aGv~v~~~~p~~----~~~-~~~~~~~~R~HrKi 115 (411)
T PRK11263 54 LLAAAQRGVKVEVLV-DGYGSPDL------------SDEFVNELTAAGVRFRYFDPRP----RLL-GMRTNLFRRMHRKI 115 (411)
T ss_pred HHHHHHCCCEEEEEE-ECCCCCCC------------CHHHHHHHHHCCeEEEEeCCcc----ccc-ccccccccCCcceE
Confidence 999999999999996 98876422 2345667888999998764321 111 01122346999999
Q ss_pred EEecCCCCCCCccEEEEEcccccCCCCCCCCCCCccccccccCCCCCCCCccccCCCCCCCCCCeeeeeeEEcCHHHHHH
Q 001126 670 VIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTQGNTTGCPREPWHDLHSKIDGPAAYDV 749 (1149)
Q Consensus 670 VVVD~~~~~~~r~~vAFVGGiNL~dgRwDt~~H~l~~~~~~~~~~Dy~np~~~~~~~~~~pr~PWHDv~vrI~GPaa~Dl 749 (1149)
+|||++ +|||||+|++++++.. .....|+|++++|+||+|.++
T Consensus 116 iVIDg~--------~a~vGg~N~~~~~~~~-----------------------------~g~~~w~D~~v~i~Gp~V~~l 158 (411)
T PRK11263 116 VVIDGR--------IAFVGGINYSADHLSD-----------------------------YGPEAKQDYAVEVEGPVVADI 158 (411)
T ss_pred EEEcCC--------EEEEcCeEchHhhccc-----------------------------cCCCCceEEEEEEECHHHHHH
Confidence 999997 9999999999865421 012479999999999999999
Q ss_pred HHHHHHHHHhhcCCCCccccCCchhhhhhhccCCCccCCCCCCCcccCCCCCcEEEEEeecCCCccccCCCChhhhcccc
Q 001126 750 LTNFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKN 829 (1149)
Q Consensus 750 ~~~F~qrWn~~t~~~~~~~l~~~~~~l~~~~~~p~~~~~~~~p~~~~~~~~~~~vQvlRS~~~~s~~~~P~~p~~~~~~~ 829 (1149)
...|.+.|....... . .. .+.+. .+ .....+...+|++.+- |..
T Consensus 159 ~~~f~~~w~~~~~~~---~-------~~--~~~~~------~~--~~~~~g~~~~~~v~~~-----------p~~----- 202 (411)
T PRK11263 159 HQFELEALPGQSAAR---R-------WW--RRHHR------AE--ENRQPGEAQALLVWRD-----------NEE----- 202 (411)
T ss_pred HHHHHHHHhhcccch---h-------hh--ccccc------Cc--ccCCCCCeEEEEEECC-----------Ccc-----
Confidence 999999997532110 0 00 00000 00 0011233456665441 110
Q ss_pred cccCcccchhhHHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecC
Q 001126 830 LVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPM 909 (1149)
Q Consensus 830 l~~g~~~~~e~sI~~ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~aira~rgv~V~IVlP~ 909 (1149)
....|+.+|+++|++||+.|||+|+||+++. .+..+|..| +++||+|+||+|.
T Consensus 203 --------~~~~i~~~~~~~i~~A~~~I~I~tpYf~p~~-----------------~l~~aL~~A--a~RGV~V~ii~~~ 255 (411)
T PRK11263 203 --------HRDDIERHYLKALRQARREVIIANAYFFPGY-----------------RLLRALRNA--ARRGVRVRLILQG 255 (411)
T ss_pred --------hHHHHHHHHHHHHHHhceEEEEEecCcCCCH-----------------HHHHHHHHH--HHCCCEEEEEeCC
Confidence 1347999999999999999999999999863 355555554 4699999999997
Q ss_pred CCCCCCCCchhHHHHHHHHhhhhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhh
Q 001126 910 WPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALS 989 (1149)
Q Consensus 910 ~Peg~p~~~s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~Lr~r~~~~~~~~~~~~~~~~~~~~~~~~ 989 (1149)
.+ +++++++..+ .+++.|+++|++++. | +
T Consensus 256 ~~--------d~~~~~~a~~-------~~~~~Ll~~Gv~I~~----y----~---------------------------- 284 (411)
T PRK11263 256 EP--------DMPIVRVGAR-------LLYNYLLKGGVQIYE----Y----C---------------------------- 284 (411)
T ss_pred CC--------CcHHHHHHHH-------HHHHHHHHCCCEEEE----e----c----------------------------
Confidence 53 5667766554 578999999999863 1 0
Q ss_pred cccCcccceeeeEEEEEeCeEEEEcccccccCCCCCCCCcceEEEEeCcchh
Q 001126 990 RKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1041 (1149)
Q Consensus 990 ~~~r~~~iYVHSKlmIVDD~~viIGSANiN~RSm~G~~DsEiav~i~dp~~~ 1041 (1149)
..++|+|+|||||++++|||+|||.|||. .|.|++++|+|++++
T Consensus 285 ------~~~lHaK~~viD~~~~~vGS~Nld~rS~~--lN~E~~~~i~d~~~a 328 (411)
T PRK11263 285 ------RRPLHGKVALMDDHWATVGSSNLDPLSLS--LNLEANLIIRDRAFN 328 (411)
T ss_pred ------CCCceeEEEEECCCEEEEeCCcCCHHHhh--hhhhcCEEEeCHHHH
Confidence 23789999999999999999999999998 899999999999864
No 9
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=100.00 E-value=1.4e-35 Score=351.27 Aligned_cols=337 Identities=27% Similarity=0.380 Sum_probs=243.1
Q ss_pred ccCCeeEecccccCCCCCCCcccccCCCccchhhHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHH
Q 001126 512 RKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLR 591 (1149)
Q Consensus 512 ~~Gn~V~ly~dg~~~~~~~~~i~l~~g~~y~~~~~f~al~eAI~~Ak~sI~I~~W~~~p~i~L~r~~~~~~g~rL~dlL~ 591 (1149)
..++.++++.+|. +.|.+++++|++|+++|+|+.| ++.++. .+..+.++|.
T Consensus 57 ~~~~~~~~l~~~~--------------------~~~~~~~~~i~~a~~~I~~~~~-------i~~~d~--~~~~i~~~l~ 107 (438)
T COG1502 57 ISGNGVDLLKDGA--------------------DAFAALIELIEAAKKSIYLQYY-------IWQDDE--LGREILDALI 107 (438)
T ss_pred CCCCceEEecCHH--------------------HHHHHHHHHHHHHhhEEEEEEE-------EEeCCh--hHHHHHHHHH
Confidence 6789999999986 7899999999999999999887 556654 7899999999
Q ss_pred HHHhcCCeEEEEEecCCCcccccccccccccccccHHHHHHhccCCc-EEEEccCccccccccccccccccccccccceE
Q 001126 592 SKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSV-KVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTV 670 (1149)
Q Consensus 592 ~kA~rGVkVrILVwD~~gs~~~~g~k~~g~m~~~~~~t~~~l~~~gV-~v~l~p~~~~~~~~~~~~~~~~~~~rHHQKiV 670 (1149)
++|++||+||+|+ |+.++...+ .......++++++ ++..+.+..... ......+.++|+|++
T Consensus 108 ~~a~~gv~vr~l~-D~~~~~~~~-----------~~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~~r~H~K~~ 170 (438)
T COG1502 108 EAAKRGVEVRLLL-DDIGSTRGL-----------LKSLLALLKRAGIEEVRLFNPASPRP-----LRFRRLNRRLHRKIV 170 (438)
T ss_pred HHHHcCCEEEEEE-ecCCCcccc-----------cHHHHHHHhcCCceEEEecCCccccc-----chhhhhhccccceEE
Confidence 9999999999996 888762211 1235667788898 666654322110 012345789999999
Q ss_pred EecCCCCCCCccEEEEEcccccCCCCCCCCCCCccccccccCCCCCCCCccccCCCCCCCCCCeeeeeeEEcCHHHHHHH
Q 001126 671 IVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTQGNTTGCPREPWHDLHSKIDGPAAYDVL 750 (1149)
Q Consensus 671 VVD~~~~~~~r~~vAFVGGiNL~dgRwDt~~H~l~~~~~~~~~~Dy~np~~~~~~~~~~pr~PWHDv~vrI~GPaa~Dl~ 750 (1149)
|||++ ++|+||.|+.+.++.... ...+|+|++++++||+|.++.
T Consensus 171 viD~~--------i~~vGg~N~~d~y~~~~~----------------------------~~~~~~D~~~~~~g~~v~~l~ 214 (438)
T COG1502 171 VIDGK--------VAFVGGANIGDEYFHKDK----------------------------GLGYWRDLHVRITGPAVADLA 214 (438)
T ss_pred EEcCC--------EEEecCcccchhhhccCc----------------------------CcccceeeeEEEECHHHHHHH
Confidence 99996 999999999998763210 124899999999999999999
Q ss_pred HHHHHHHHhhcCCCCccccCCchhhhhhhccCCCccCCCCCCCcccCCCCCcEEEEEeecCCCccccCCCChhhhccccc
Q 001126 751 TNFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNL 830 (1149)
Q Consensus 751 ~~F~qrWn~~t~~~~~~~l~~~~~~l~~~~~~p~~~~~~~~p~~~~~~~~~~~vQvlRS~~~~s~~~~P~~p~~~~~~~l 830 (1149)
.+|.++|+....... .+. . . ..+... ... .........+|++.+.+. ....
T Consensus 215 ~~f~~~w~~~~~~~~--~~~---~-~----~~~~~~--~~~---~~~~~~~~~~~~~~~~P~--------~~~~------ 265 (438)
T COG1502 215 RLFIQDWNLESGSSK--PLL---A-L----VRPPLQ--SLS---LLPVGRGSTVQVLSSGPD--------KGLG------ 265 (438)
T ss_pred HHHHHHhhhccCcCc--ccc---c-c----cccccc--ccc---ccccccCcceEEEecCCc--------cccc------
Confidence 999999998743210 000 0 0 000000 000 000111222577666421 1000
Q ss_pred ccCcccchhhHHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCC
Q 001126 831 VCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMW 910 (1149)
Q Consensus 831 ~~g~~~~~e~sI~~ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~aira~rgv~V~IVlP~~ 910 (1149)
.. ...+...|+.+|.+|+++|+|++|||+++. ++..+|..+ +.+||+|+|++|..
T Consensus 266 ---~~---~~~~~~~~~~~i~~A~~~i~i~~pYf~~~~-----------------~~~~al~~a--~~~Gv~V~ii~~~~ 320 (438)
T COG1502 266 ---SE---LIELNRLLLKAINSARESILIATPYFVPDR-----------------ELLAALKAA--ARRGVDVRIIIPSL 320 (438)
T ss_pred ---hh---hhhHHHHHHHHHHhhceEEEEEcCCcCCCH-----------------HHHHHHHHH--HhcCCEEEEEeCCC
Confidence 00 112558999999999999999999999874 455555554 47999999999953
Q ss_pred CCCCCCCchhHHHHHHHHhhhhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhc
Q 001126 911 PEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSR 990 (1149)
Q Consensus 911 Peg~p~~~s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~Lr~r~~~~~~~~~~~~~~~~~~~~~~~~~ 990 (1149)
+..+..+++|..+ .++..|.+.|++++..+
T Consensus 321 ------~~~d~~~~~~~~~-------~~~~~l~~~gv~i~~~~------------------------------------- 350 (438)
T COG1502 321 ------GANDSAIVHAAYR-------AYLKELLEAGVKVYEYP------------------------------------- 350 (438)
T ss_pred ------CCCChHHHHHHHH-------HHHHHHHHhCCEEEEec-------------------------------------
Confidence 1335566665444 68899999999885310
Q ss_pred ccCccc-ceeeeEEEEEeCeEEEEcccccccCCCCCCCCcceEEEEeCcchh
Q 001126 991 KSGRFM-IYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1041 (1149)
Q Consensus 991 ~~r~~~-iYVHSKlmIVDD~~viIGSANiN~RSm~G~~DsEiav~i~dp~~~ 1041 (1149)
. .++|+|+|||||++++|||+|||.||+. .|+|++++|+|+++.
T Consensus 351 -----~g~~lH~K~~iiD~~~~~vGS~N~~~rS~~--lN~E~~~~i~d~~~~ 395 (438)
T COG1502 351 -----GGAFLHSKVMIIDDRTVLVGSANLDPRSLR--LNFEVGLVIEDPELA 395 (438)
T ss_pred -----CCCcceeeEEEEcCCEEEEeCCcCCHhHHH--HhhhheeEEeCHHHH
Confidence 1 3899999999999999999999999999 899999999998643
No 10
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=100.00 E-value=2.1e-33 Score=330.95 Aligned_cols=350 Identities=16% Similarity=0.157 Sum_probs=223.0
Q ss_pred cCCeeEecccccCCCCCCCcccccCCCccchhhHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHH
Q 001126 513 KGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRS 592 (1149)
Q Consensus 513 ~Gn~V~ly~dg~~~~~~~~~i~l~~g~~y~~~~~f~al~eAI~~Ak~sI~I~~W~~~p~i~L~r~~~~~~g~rL~dlL~~ 592 (1149)
.++.|+++.+|. ++|++|+++|++||++|+|++| ++.+|+ .|..|.++|.+
T Consensus 23 ~~~~v~~l~~~~--------------------~f~~~Ll~~I~~Ak~~I~l~~y-------~~~~D~--~g~~il~AL~~ 73 (451)
T PRK09428 23 SPDDVETLYSPA--------------------DFRETLLEKIASAKKRIYIVAL-------YLEDDE--AGREILDALYQ 73 (451)
T ss_pred CcccEEEEcCHH--------------------HHHHHHHHHHHhcCCeEEEEEE-------EecCCc--hHHHHHHHHHH
Confidence 568899999986 7899999999999999999998 445554 78999999998
Q ss_pred HH--hcCCeEEEEEecCC-CcccccccccccccccccHHHHHHhcc--CCcEEEEccCcccccccccccccccccccccc
Q 001126 593 KS--QEGVRVLLLVWDDP-TSRSILGYKMDGVMQTHDEETRRVFKH--SSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQ 667 (1149)
Q Consensus 593 kA--~rGVkVrILVwD~~-gs~~~~g~k~~g~m~~~~~~t~~~l~~--~gV~v~l~p~~~~~~~~~~~~~~~~~~~rHHQ 667 (1149)
|+ ++||+|+||+ |.. +.++..|... . .....+...++. +||++.++.... + ....+.++|+
T Consensus 74 a~~~~~gv~VrvLv-D~~Ra~Rg~iG~~~---~-~~~~~~~~~l~~~~~gv~v~~f~~p~--~-------~~e~~gr~Hr 139 (451)
T PRK09428 74 AKQQNPELDIKVLV-DWHRAQRGLIGAAA---S-NTNADWYCEMAQEYPGVDIPVYGVPV--N-------TREALGVLHL 139 (451)
T ss_pred HHhcCCCcEEEEEE-EcccccccccccCC---C-CcCHHHHHHHHHhCCCceEEEcCCcc--c-------cchhhhhcee
Confidence 84 4899999997 864 2221111100 0 011233344443 368988872211 0 1124568999
Q ss_pred ceEEecCCCCCCCccEEEEEcccccCCCCCCCCCCCccccccccCCCCCCCCccccCCCCCCCCCCeeeeeeEEcCHHHH
Q 001126 668 KTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTQGNTTGCPREPWHDLHSKIDGPAAY 747 (1149)
Q Consensus 668 KiVVVD~~~~~~~r~~vAFVGGiNL~dgRwDt~~H~l~~~~~~~~~~Dy~np~~~~~~~~~~pr~PWHDv~vrI~GPaa~ 747 (1149)
|++|||++ |+|+| .||.+.|.... . ....|..++|+||++.
T Consensus 140 Ki~IiD~~--------v~ysG-aNi~d~Yl~~~-----------------------------~-~~r~Dry~~i~g~~la 180 (451)
T PRK09428 140 KGFIIDDT--------VLYSG-ASLNNVYLHQH-----------------------------D-KYRYDRYHLIRNAELA 180 (451)
T ss_pred eEEEECCC--------EEEec-ccccHHHhcCC-----------------------------c-ccCcceEEEEeCchHH
Confidence 99999996 99987 79999765210 0 1123778889999999
Q ss_pred HHHHHHHHHHHhhcCCCCccccCC----c-h---hhhhhh-ccCCCccCCCCCCCcccCCCCCcEEEEEeecCCCccccC
Q 001126 748 DVLTNFEERWRKASKPHGIKKLKS----G-D---DALLRI-ERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGF 818 (1149)
Q Consensus 748 Dl~~~F~qrWn~~t~~~~~~~l~~----~-~---~~l~~~-~~~p~~~~~~~~p~~~~~~~~~~~vQvlRS~~~~s~~~~ 818 (1149)
++...|++.|..++... ..+.. . . ...... ..... ...... .. .+.-.+++...+.
T Consensus 181 ~~~~~fi~~~~~~~~~v--~~l~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~--~~-~~~~~~~v~p~~g------- 245 (451)
T PRK09428 181 DSMVNFIQQNLLNSPAV--NRLDQPNRPKTKEIKNDIRQFRQRLRD---AAYQFQ--GQ-ANNDELSVTPLVG------- 245 (451)
T ss_pred HHHHHHHHHHhhccCcc--ccccccccccchhhHHHHHHHHHHHhh---hccCcc--cc-cCCCCeEEeeeec-------
Confidence 99999999998764321 01100 0 0 000000 00000 000000 00 0001123322211
Q ss_pred CCChhhhcccccccCcccchhhHHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcC
Q 001126 819 PKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAH 898 (1149)
Q Consensus 819 P~~p~~~~~~~l~~g~~~~~e~sI~~ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~aira~ 898 (1149)
.|+ ...+...++.+|..|++.|+|.|+||+++. .+..+|..++ +
T Consensus 246 -------------~g~----~~~l~~~~~~li~~A~~~i~I~TPYF~p~~-----------------~l~~~L~~a~--~ 289 (451)
T PRK09428 246 -------------LGK----KNLLNKTIFHLMASAEQKLTICTPYFNLPA-----------------ILVRNIIRLL--R 289 (451)
T ss_pred -------------cCC----chHHHHHHHHHHhccCcEEEEEeCCcCCCH-----------------HHHHHHHHHH--h
Confidence 011 136788999999999999999999999874 4555666553 6
Q ss_pred CCcEEEEEecCCCCCCCCCchhHHHHHHHHhhhhhHHH----HH---HHHHHHcC---CceeecccccccccccCCcccc
Q 001126 899 ERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYE----TI---YKALVEVG---LEGAFSPQDYLNFFCLGNREVI 968 (1149)
Q Consensus 899 rgv~V~IVlP~~Peg~p~~~s~~~il~~~~rTm~~~~~----si---~~~L~~~G---v~~~~~P~~Yl~f~~Lr~r~~~ 968 (1149)
+|++|.||+|..-..+.....+++++.+.... ..|+ .+ ++.|.++| ++++..
T Consensus 290 rGv~V~Ii~~~~~andfy~~~d~~~~~~~~~p--y~ye~~lr~f~~~~~~li~~G~l~v~i~~~---------------- 351 (451)
T PRK09428 290 RGKKVEIIVGDKTANDFYIPPDEPFKIIGALP--YLYEINLRRFAKRLQYYIDNGQLNVRLWKD---------------- 351 (451)
T ss_pred cCCcEEEEcCCcccccCcCCCccHHHHhhhhH--HHHHHhhhhhHHHhhhhhhcCcceEEEEec----------------
Confidence 89999999997522211122455666554432 1111 11 23455666 554421
Q ss_pred cccCCCCCCCCCCCCchhhhhcccCcccceeeeEEEEEeCeEEEEcccccccCCCCCCCCcceEEEEeCcchh
Q 001126 969 DQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1041 (1149)
Q Consensus 969 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~iYVHSKlmIVDD~~viIGSANiN~RSm~G~~DsEiav~i~dp~~~ 1041 (1149)
....+|+|+|+|||+|++|||+|||.||+. +|.|++++|+|++..
T Consensus 352 --------------------------~~~~~HaK~i~vD~~~~~iGS~Nld~RS~~--ln~E~~l~i~d~~~~ 396 (451)
T PRK09428 352 --------------------------GDNSYHLKGIWVDDRWMLLTGNNLNPRAWR--LDLENALLIHDPKQE 396 (451)
T ss_pred --------------------------CCCcceEEEEEEeCCEEEEcCCCCChhHhh--hcccceEEEECChHH
Confidence 123789999999999999999999999999 999999999999743
No 11
>PHA02820 phospholipase-D-like protein; Provisional
Probab=100.00 E-value=3.3e-32 Score=319.79 Aligned_cols=325 Identities=16% Similarity=0.191 Sum_probs=210.9
Q ss_pred hHHHHHHHHHHHhccceEEEEeeccceeeEEeCC-CCchHHHHHHHHHHHHhcCCeEEEEEecCCCcccccccccccccc
Q 001126 545 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDA-SPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQ 623 (1149)
Q Consensus 545 ~~f~al~eAI~~Ak~sI~I~~W~~~p~i~L~r~~-~~~~g~rL~dlL~~kA~rGVkVrILVwD~~gs~~~~g~k~~g~m~ 623 (1149)
.+|+.+.++|.+||++|+|+++.|.+ .+. ....|.+|.++|++||+|||+||||+ |..+..
T Consensus 26 ~t~~~~~~lI~~Ak~~I~I~s~yf~~-----~d~~~~~~G~~i~~aL~~aA~rGV~VRIL~-d~~~~~------------ 87 (424)
T PHA02820 26 STFNFWREILSNTTKTLDISSFYWSL-----SDEVGTNFGTMILNEIIQLPKRGVRVRIAV-NKSNKP------------ 87 (424)
T ss_pred CHHHHHHHHHHhhCcEEEEEeEEEec-----CccccchhHHHHHHHHHHHHHCCCEEEEEE-CCCCCc------------
Confidence 57899999999999999999985532 221 12357899999999999999999986 753210
Q ss_pred cccHHHHHHhccCCcEEEEccCccccccccccccccccccccccceEEecCCCCCCCccEEEEEcccccCCCCCCCCCCC
Q 001126 624 THDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHP 703 (1149)
Q Consensus 624 ~~~~~t~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~rHHQKiVVVD~~~~~~~r~~vAFVGGiNL~dgRwDt~~H~ 703 (1149)
....+.|+.+||++..+.... + ...++|+|++|||++ ++|+||+|+.+ |+.+
T Consensus 88 ---~~~~~~L~~aGv~v~~~~~~~-----~-------~~~~~HrK~~VIDg~--------~~~iGS~Nid~-rsl~---- 139 (424)
T PHA02820 88 ---LKDVELLQMAGVEVRYIDITN-----I-------LGGVLHTKFWISDNT--------HIYLGSANMDW-RSLT---- 139 (424)
T ss_pred ---hhhHHHHHhCCCEEEEEecCC-----C-------CcccceeeEEEECCC--------EEEEeCCcCCh-hhhh----
Confidence 112345778999998764321 1 235799999999997 99999999966 4421
Q ss_pred ccccccccCCCCCCCCccccCCCCCCCCCCeeeeeeEE--cCHHHHHHHHHHHHHHHhhcCCCCccccCCchhhhhhhcc
Q 001126 704 LFRTLQTLHKDDYHNPTFTQGNTTGCPREPWHDLHSKI--DGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIER 781 (1149)
Q Consensus 704 l~~~~~~~~~~Dy~np~~~~~~~~~~pr~PWHDv~vrI--~GPaa~Dl~~~F~qrWn~~t~~~~~~~l~~~~~~l~~~~~ 781 (1149)
..+|+++++ +|++|.++.+.|.+.|+..++... . .+.. .
T Consensus 140 -----------------------------~n~E~gv~i~~~g~~v~~L~~~F~~dW~~~~~~~~-~---~~~~------~ 180 (424)
T PHA02820 140 -----------------------------QVKELGIAIFNNSNLAADLTQIFEVYWYLGVNNLP-Y---NWKN------F 180 (424)
T ss_pred -----------------------------hCCceEEEEecchHHHHHHHHHHHHHHHhhccCCC-C---cccc------c
Confidence 124677776 799999999999999997653210 0 0000 0
Q ss_pred CCCccCCCCCCCcccCCCCCcEEEEEeecCCCccccCCCChhhhcccccccCcccchhhHHHHHHHHHHHhhccEEEEEE
Q 001126 782 IPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIEN 861 (1149)
Q Consensus 782 ~p~~~~~~~~p~~~~~~~~~~~vQvlRS~~~~s~~~~P~~p~~~~~~~l~~g~~~~~e~sI~~ayl~aI~~Ak~fIYIEN 861 (1149)
.|.... ...|.. ....+....+++.+. |... ...+ .....++|+.+|++||++|||++
T Consensus 181 ~~~~~~-~~~p~~-~~~~~~~~~~~~sss-----------P~~~----~~~~-----r~~~~~~~l~~I~~Ak~~I~I~t 238 (424)
T PHA02820 181 YPLYYN-TDHPLS-LNVSGVPHSVFIASA-----------PQQL----CTME-----RTNDLTALLSCIRNASKFVYVSV 238 (424)
T ss_pred cccccc-cCCCcc-cccCCccceEEEeCC-----------Chhh----cCCC-----CCchHHHHHHHHHHHhhEEEEEE
Confidence 010000 000100 000111112333332 1100 0000 12357999999999999999999
Q ss_pred eeeecCCC-------CcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCchhHHHHHHHHhhhhhH
Q 001126 862 QYFIGSSY-------NWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMM 934 (1149)
Q Consensus 862 QYFi~~~~-------~w~~~~~~g~~n~I~~~ial~Ia~aira~rgv~V~IVlP~~Peg~p~~~s~~~il~~~~rTm~~~ 934 (1149)
+||+|+.+ .|+ .|..+|.+|. +.|||+|+||+|.|++. ..+.|+.
T Consensus 239 pyfvP~~~~~~~~~~yw~-------------~i~~AL~~AA-~~RGV~VriLvp~~~d~--------~~~~~a~------ 290 (424)
T PHA02820 239 MNFIPIIYSKAGKILFWP-------------YIEDELRRAA-IDRKVSVKLLISCWQRS--------SFIMRNF------ 290 (424)
T ss_pred ccccceeeccCCcccchH-------------HHHHHHHHHH-HhCCCEEEEEEeccCCC--------CccHHHH------
Confidence 99999821 232 3445554321 37999999999998642 2333322
Q ss_pred HHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCcccceeeeEEEEEeCeEEEEc
Q 001126 935 YETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILG 1014 (1149)
Q Consensus 935 ~~si~~~L~~~Gv~~~~~P~~Yl~f~~Lr~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iYVHSKlmIVDD~~viIG 1014 (1149)
...++.|.++|++++. .+|....+ + ..-....++|+|+||||| ++.||
T Consensus 291 -~~~l~~L~~~gv~I~V------k~y~~p~~------~------------------~~~~~~~f~HaK~~vvD~-~a~IG 338 (424)
T PHA02820 291 -LRSIAMLKSKNINIEV------KLFIVPDA------D------------------PPIPYSRVNHAKYMVTDK-TAYIG 338 (424)
T ss_pred -HHHHHHHhccCceEEE------EEEEcCcc------c------------------ccCCcceeeeeeEEEEcc-cEEEE
Confidence 2457888889988741 11211000 0 000113589999999997 69999
Q ss_pred ccccccCCCCCCCCcceEEEEeCc
Q 001126 1015 SANINQRSMEGTRDTEIAMGAYQP 1038 (1149)
Q Consensus 1015 SANiN~RSm~G~~DsEiav~i~dp 1038 (1149)
|||||.|||. .|.|+++.++|.
T Consensus 339 TsN~D~rsf~--~n~ev~~~i~~~ 360 (424)
T PHA02820 339 TSNWTGNYFT--DTCGVSINITPD 360 (424)
T ss_pred CCcCCHHHHh--ccCcEEEEEecC
Confidence 9999999999 899999999986
No 12
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=100.00 E-value=4.3e-31 Score=306.54 Aligned_cols=318 Identities=16% Similarity=0.182 Sum_probs=204.7
Q ss_pred hHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHHHHhcCCeEEEEEecCCCccccccccccccccc
Q 001126 545 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQT 624 (1149)
Q Consensus 545 ~~f~al~eAI~~Ak~sI~I~~W~~~p~i~L~r~~~~~~g~rL~dlL~~kA~rGVkVrILVwD~~gs~~~~g~k~~g~m~~ 624 (1149)
.+|++++++|++||++|+|+.|.| .++++. .+.+|.++|++||+|||+||||+ |+.++.
T Consensus 31 ~~~~~l~~~I~~Ak~~I~i~~yi~-----~~~~d~--~g~~i~~aL~~aa~rGV~Vril~-D~~~~~------------- 89 (369)
T PHA03003 31 STYECFDEIISQAKKYIYIASFCC-----NLRSTP--EGRLILDKLKEAAESGVKVTILV-DEQSGD------------- 89 (369)
T ss_pred CHHHHHHHHHHhhhhEEEEEEEEe-----cccCCc--hHHHHHHHHHHhccCCCeEEEEe-cCCCCC-------------
Confidence 579999999999999999999952 134443 78999999999999999999995 875421
Q ss_pred ccHHHHHHhccCCcEEEEccCccccccccccccccccccccccceEEecCCCCCCCccEEEEEcccccCCCCCCCCCCCc
Q 001126 625 HDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPL 704 (1149)
Q Consensus 625 ~~~~t~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~rHHQKiVVVD~~~~~~~r~~vAFVGGiNL~dgRwDt~~H~l 704 (1149)
...+.|+..||+++.+.... .+..+..|.|++|||++ +||+||+||+++++.. .|
T Consensus 90 ---~~~~~L~~~Gv~v~~~~~~~-----------~~~~~~~~~k~~IiDg~--------~~y~Gg~Ni~~~~~~~-~~-- 144 (369)
T PHA03003 90 ---KDEEELQSSNINYIKVDIGK-----------LNNVGVLLGSFWVSDDR--------RCYIGNASLTGGSIST-IK-- 144 (369)
T ss_pred ---ccHHHHHHcCCEEEEEeccc-----------cCCCCceeeeEEEEcCc--------EEEEecCccCCcccCc-cc--
Confidence 23456788899987653211 00012358899999997 9999999999965421 11
Q ss_pred cccccccCCCCCCCCccccCCCCCCCCCCeeeeeeEEcCHHHHHHHHHHHHHHHhhcCCCCccccCCchhhhhhhccCCC
Q 001126 705 FRTLQTLHKDDYHNPTFTQGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIPG 784 (1149)
Q Consensus 705 ~~~~~~~~~~Dy~np~~~~~~~~~~pr~PWHDv~vrI~GPaa~Dl~~~F~qrWn~~t~~~~~~~l~~~~~~l~~~~~~p~ 784 (1149)
..+.|+|. ||+|.+|++.|.+.|..++++....+. . .. ...+.
T Consensus 145 -------------------------~~g~~~d~-----g~~v~~l~~~F~~~w~~~~~~~~~~~~---~--~~--~~~~~ 187 (369)
T PHA03003 145 -------------------------TLGVYSTY-----PPLATDLRRRFDTFKAFNKNKSVFNRL---C--CA--CCLPV 187 (369)
T ss_pred -------------------------cceeEecC-----cHHHHHHHHHHHHHHHhcCCCCccccc---c--cc--cCCcc
Confidence 12479883 999999999999999976543200000 0 00 00000
Q ss_pred ccCCCCCCCcccCCCCCcEEEEEeecCCCccccCCCChhhhcccccccCcccchhhHHHHHHHHHHHhhccEEEEEEeee
Q 001126 785 IIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYF 864 (1149)
Q Consensus 785 ~~~~~~~p~~~~~~~~~~~vQvlRS~~~~s~~~~P~~p~~~~~~~l~~g~~~~~e~sI~~ayl~aI~~Ak~fIYIENQYF 864 (1149)
.. +. ....+. ..+++.+ .|.... +. ....++++|+++|.+||++|+|+++||
T Consensus 188 ~~-----~~-~~~~~~--~~~~~~s-----------~P~~~~------~~---~~~~~~~~ll~~I~~Ak~~I~I~t~yf 239 (369)
T PHA03003 188 ST-----KY-HINNPI--GGVFFSD-----------SPEHLL------GY---SRTLDADVVLHKIKSAKKSIDLELLSL 239 (369)
T ss_pred cc-----cc-cccCCC--cceEEec-----------CChHHc------CC---CCCcCHHHHHHHHHHHhhEEEEEEecc
Confidence 00 00 000010 1122222 121100 00 012478999999999999999999999
Q ss_pred ecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCchhHHHHHHHHhhhhhHHHHHHHHHHH
Q 001126 865 IGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVE 944 (1149)
Q Consensus 865 i~~~~~w~~~~~~g~~n~I~~~ial~Ia~aira~rgv~V~IVlP~~Peg~p~~~s~~~il~~~~rTm~~~~~si~~~L~~ 944 (1149)
++.....+ .. ....++..+|.+|. ++|||+|+||+|.+... +. ....+++.|++
T Consensus 240 ~P~~~~d~---~~----~~~~~i~~AL~~AA-a~RGV~VRILv~~~~~~------~~------------~~~~~~~~L~~ 293 (369)
T PHA03003 240 VPVIREDD---KT----TYWPDIYNALIRAA-INRGVKVRLLVGSWKKN------DV------------YSMASVKSLQA 293 (369)
T ss_pred ccEEeeCC---CC----ccHHHHHHHHHHHH-HcCCCEEEEEEecCCcC------Cc------------hhhhHHHHHHH
Confidence 87521100 00 00124555555431 27999999999985311 10 01246788999
Q ss_pred cCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCcccceeeeEEEEEeCeEEEEcccccccCCCC
Q 001126 945 VGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSME 1024 (1149)
Q Consensus 945 ~Gv~~~~~P~~Yl~f~~Lr~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iYVHSKlmIVDD~~viIGSANiN~RSm~ 1024 (1149)
+|++... .+.+|. ...|+|+|||||++++|||+||+.||+.
T Consensus 294 ~G~~~~i----~vri~~-----------------------------------~~~H~K~~VVD~~~a~iGS~N~d~~s~~ 334 (369)
T PHA03003 294 LCVGNDL----SVKVFR-----------------------------------IPNNTKLLIVDDEFAHITSANFDGTHYL 334 (369)
T ss_pred cCCCCCc----eEeeec-----------------------------------CCCCceEEEEcCCEEEEeccccCchhhc
Confidence 9954210 000010 0169999999999999999999999998
Q ss_pred CCCCcceEEEEeCcch
Q 001126 1025 GTRDTEIAMGAYQPEY 1040 (1149)
Q Consensus 1025 G~~DsEiav~i~dp~~ 1040 (1149)
.+.|+++.++++..
T Consensus 335 --~~~e~~~~~~~~~~ 348 (369)
T PHA03003 335 --HHAFVSFNTIDKEL 348 (369)
T ss_pred --cCCCeEEecCChhH
Confidence 78999988777654
No 13
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.93 E-value=4.6e-26 Score=272.46 Aligned_cols=178 Identities=19% Similarity=0.298 Sum_probs=147.8
Q ss_pred cCCCCCcccCCCCCcc-cCccccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeece--------------
Q 001126 285 LSSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG-------------- 347 (1149)
Q Consensus 285 ~~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~LlhG-------------- 347 (1149)
...+.+|+.||.++|+ +| |+|.|||||||+|+.+|. +||||||+ |+.++.+||.+|
T Consensus 374 ~~~~~~~v~~nk~~L~RIY---PkG~RvdSSNynP~~~W~----~GcQMVALN~Qt~d~~M~LN~G~F~~NG~CGYVLKP 446 (598)
T PLN02230 374 ASYGADVIRFTQKNFLRIY---PKGTRFNSSNYKPQIGWM----SGAQMIAFNMQGYGRALWLMEGMFRANGGCGYVKKP 446 (598)
T ss_pred HhhhHHHHHhhhhhceeeC---CCCCcCCCCCCCchhHhc----CceEEeeecccCCChHHHhhcchhccCCCCCceECC
Confidence 4677899999999999 99 999999999999997777 99999999 999998887776
Q ss_pred -----------------------EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeee
Q 001126 348 -----------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTF 400 (1149)
Q Consensus 348 -----------------------tL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~rTk 400 (1149)
+|+|+|+.|++|+. +....+++.+.. .||||+|.|.| ...+||+
T Consensus 447 ~~Lr~~~~~~~~fdP~~~~~~~~~L~V~VisGq~~~l-~~~k~~~~~~s~--------~DpyV~Vei~Gvp~D~~~~kT~ 517 (598)
T PLN02230 447 DFLMDAGPNGQDFYPKDNSCPKKTLKVKVCMGDGWLL-DFKKTHFDSYSP--------PDFFVRVGIAGAPVDEVMEKTK 517 (598)
T ss_pred HHhcCCCccccccCCCcCCCcCcEEEEEEEEccCccC-CCccccCCCCCC--------CCceEEEEEEECCCCCccccee
Confidence 58899999999862 222222222222 79999999976 2335999
Q ss_pred eecCCCCCeeceEEEEEccCCC-ceEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEE
Q 001126 401 VISNSEDPVWQQHFYVPVAHSA-AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTL 478 (1149)
Q Consensus 401 Vi~nt~nPvWNE~F~f~v~~~~-~~L~~~V~D~D~-~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L 478 (1149)
|+.|++||+|||+|.|++..++ +.|+|+|+|+|. .+++|||+++|||++|+.|. +.++|++.+|.++.. .+|.+
T Consensus 518 v~~n~~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~~-~~Ll~ 593 (598)
T PLN02230 518 IEYDTWTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYSS-TRLLM 593 (598)
T ss_pred ccCCCCCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCCC-CeeEE
Confidence 9999999999999999988886 899999999998 56899999999999999997 569999999998763 35544
Q ss_pred EEEe
Q 001126 479 SIQY 482 (1149)
Q Consensus 479 ~L~f 482 (1149)
+++|
T Consensus 594 ~f~~ 597 (598)
T PLN02230 594 RFEF 597 (598)
T ss_pred EEEe
Confidence 4443
No 14
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.92 E-value=4.9e-26 Score=270.97 Aligned_cols=176 Identities=26% Similarity=0.364 Sum_probs=150.6
Q ss_pred CCCCCcccCCCCCcc-cCccccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeece---------------
Q 001126 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG--------------- 347 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~LlhG--------------- 347 (1149)
..+.+|+.||.+.|+ +| |++.|+|||||+|+.+|. +||||||+ |++++.++|++|
T Consensus 524 ~~~~~~v~~t~r~L~RvY---P~~~R~dSSNynPq~~W~----~G~QmVAlN~Qt~G~~l~L~~G~Fr~NGgCGYVlKP~ 596 (746)
T KOG0169|consen 524 EYGPDFVRHTQRNLLRVY---PKGLRVDSSNYNPQEFWN----HGCQMVALNFQTPGRMLDLNQGMFRANGGCGYVLKPD 596 (746)
T ss_pred HhhhHHHHHhHhheeeec---CCccccCCCCCChHHHHh----cCceEEEEecCCCChhhhhhhhhhccCCCccceECcH
Confidence 567799999999999 99 999999999999996666 99999999 999999999888
Q ss_pred --------------------EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE----EEeeee-ee
Q 001126 348 --------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA----VVGRTF-VI 402 (1149)
Q Consensus 348 --------------------tL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~----~~~rTk-Vi 402 (1149)
+|+|+|++|+++.. ++..++++++ +||||.|.|.|. ...+|+ |.
T Consensus 597 ~L~~~~~~F~P~~~~~~~~~tL~IkI~sGq~~~~-~~~~~~~~~~----------~dP~v~VeI~Gvp~D~~~~~Tk~v~ 665 (746)
T KOG0169|consen 597 FLLDSGSTFDPKSNLPPVKKTLKIKIISGQGWLP-DFGKTKFGEI----------SDPDVYVEIAGVPADCAEQKTKVVK 665 (746)
T ss_pred HHcCCCCccCCCCCCCCCCceeEEEEEecCcccC-CCCCCccccc----------CCCCEEEEEcccccchhhhhceeec
Confidence 69999999998873 3333333332 799999999873 335999 56
Q ss_pred cCCCCCeeceEEEEEccCCC-ceEEEEEEEccCCC-CcceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEEEE
Q 001126 403 SNSEDPVWQQHFYVPVAHSA-AEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSI 480 (1149)
Q Consensus 403 ~nt~nPvWNE~F~f~v~~~~-~~L~~~V~D~D~~~-ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L~L 480 (1149)
.|++||.|+|+|.|.+..++ +.|+|.|+|+|..+ |||+|+++||+++|..|.+ -++|++..|+.+.. ..|.+.+
T Consensus 666 ~NgfnP~W~e~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~GyR---hVpL~~~~G~~~~~-asLfv~i 741 (746)
T KOG0169|consen 666 NNGFNPIWDEEFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGYR---HVPLLSREGEALSS-ASLFVRI 741 (746)
T ss_pred cCCcCcccCCeEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHhhCcee---eeeecCCCCccccc-eeEEEEE
Confidence 66999999999999999986 89999999999966 9999999999999999974 59999999998763 4777777
Q ss_pred Eee
Q 001126 481 QYT 483 (1149)
Q Consensus 481 ~f~ 483 (1149)
++.
T Consensus 742 ~~~ 744 (746)
T KOG0169|consen 742 AIV 744 (746)
T ss_pred EEe
Confidence 664
No 15
>PLN02223 phosphoinositide phospholipase C
Probab=99.92 E-value=2.1e-25 Score=262.21 Aligned_cols=172 Identities=22% Similarity=0.367 Sum_probs=143.0
Q ss_pred CCCcccCCCCCcc-cCccccCCCCc-CCCCCCcccCCCCCCCCCcccccC--CCCCcceeeece----------------
Q 001126 288 PGGFYGYPNDSFS-SYPERAYLGMI-DSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG---------------- 347 (1149)
Q Consensus 288 ~~~~~~~~~~~~~-~~~~~~~~~r~-~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~LlhG---------------- 347 (1149)
+.+|+.||.+.|+ +| |+|.|+ |||||+|+.+|. +||||||+ |+.+++++|.+|
T Consensus 317 ~~~~v~ft~~~l~RiY---PkG~R~~dSSNYnP~~~W~----~GcQmVALN~QT~d~~M~LN~G~F~~NG~CGYVLKP~~ 389 (537)
T PLN02223 317 ERDIISFTQKKFLRTR---PKKKNLLINAPYKPQRAWM----HGAQLIALSRKDDKEKLWLMQGMFRANGGCGYVKKPDF 389 (537)
T ss_pred chhhhhhcccceEEEC---CCCCccccCCCCCChhhcc----cceeEeeeccCCCChhHHhhcchhccCCCCCceECChh
Confidence 4789999999999 99 999995 999999997777 99999999 999998887777
Q ss_pred --------------------EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE----EEeeeeeec
Q 001126 348 --------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA----VVGRTFVIS 403 (1149)
Q Consensus 348 --------------------tL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~----~~~rTkVi~ 403 (1149)
+|+|+|++|++|+ .++..++ +.+. ..||||+|.|.|. ..+||+|..
T Consensus 390 Lr~~~~~~~FdP~~~~~~~~~L~V~Visgq~~~-~~~~k~~-~~~s--------~~DpyV~VeI~Gvp~D~~~~kT~v~n 459 (537)
T PLN02223 390 LLNAGPSGVFYPTENPVVVKILKVKIYMGDGWI-VDFKKRI-GRLS--------KPDLYVRISIAGVPHDEKIMKTTVKN 459 (537)
T ss_pred hccCCcccccCCCCCcccceEEEEEEEEccccc-CCccccc-CCCC--------CCCeEEEEEEeeccCCcceeEEEeCC
Confidence 4899999999986 3322110 1111 2799999999762 334888888
Q ss_pred CCCCCeeceEEEEEccCCC-ceEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEEEEE
Q 001126 404 NSEDPVWQQHFYVPVAHSA-AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQ 481 (1149)
Q Consensus 404 nt~nPvWNE~F~f~v~~~~-~~L~~~V~D~D~-~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~ 481 (1149)
|++||+|||+|.|.+..++ +.|+|+|+|+|. .+++|||+++|||++|+.|. ++++|++++|+++. ..+|.|+
T Consensus 460 Ng~nPvWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~---~~~Ll~~ 533 (537)
T PLN02223 460 NEWKPTWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIEGI---RAVPLYDERGKACS---STMLLTR 533 (537)
T ss_pred CCcCceecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCC---CceEEEE
Confidence 8999999999999998886 889999999998 56889999999999999997 67999999999876 3455555
Q ss_pred e
Q 001126 482 Y 482 (1149)
Q Consensus 482 f 482 (1149)
|
T Consensus 534 f 534 (537)
T PLN02223 534 F 534 (537)
T ss_pred E
Confidence 5
No 16
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.91 E-value=5.1e-24 Score=219.67 Aligned_cols=142 Identities=55% Similarity=0.883 Sum_probs=125.9
Q ss_pred eeeeceEEEEEEEEeeCCCCCCCCCcccccccccc---C------------CCCCCCCcEEEEEECCEEEeeeeeecCCC
Q 001126 342 VLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQ---M------------NTKITSDPYVTIAVAGAVVGRTFVISNSE 406 (1149)
Q Consensus 342 ~~LlhGtL~VtVieAk~L~~~D~~g~~~~~~~~k~---~------------~~~~~sDPYV~V~l~g~~~~rTkVi~nt~ 406 (1149)
..||||+|+|+|++|++|++||..+.+.++++.+. . ....++||||+|.+++.+++||++++++.
T Consensus 2 ~~llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~ 81 (158)
T cd04015 2 AVLLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSE 81 (158)
T ss_pred ceEEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCC
Confidence 46899999999999999999997655555555431 0 13455899999999998888999999999
Q ss_pred CCeeceEEEEEccCCCceEEEEEEEccCCCCcceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEEEEEee
Q 001126 407 DPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1149)
Q Consensus 407 nPvWNE~F~f~v~~~~~~L~~~V~D~D~~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f~ 483 (1149)
||+|||+|.|++.+..+.|.|+|+|+|..++++||++.||++++..|...+.|++|.+..|++.+.+++|+|+++|+
T Consensus 82 nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 82 NPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred CCccceEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 99999999999988888999999999998999999999999999999889999999998999988889999999995
No 17
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.91 E-value=1.3e-24 Score=259.76 Aligned_cols=178 Identities=19% Similarity=0.303 Sum_probs=146.7
Q ss_pred cCCCCCcccCCCCCcc-cCccccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeece--------------
Q 001126 285 LSSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG-------------- 347 (1149)
Q Consensus 285 ~~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~LlhG-------------- 347 (1149)
...+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. .||||||+ |+.++.++|.+|
T Consensus 357 ~~~~~~~v~~n~~~L~RiY---P~G~RvdSSNynP~~~W~----~G~QmVALN~QT~d~~M~LN~G~F~~NG~cGYVLKP 429 (581)
T PLN02222 357 EKYAKQIVRFTQHNLLRIY---PKGTRVTSSNYNPLVGWS----HGAQMVAFNMQGYGRSLWLMQGMFRANGGCGYIKKP 429 (581)
T ss_pred HhhhHHHHHHhhhhceeeC---CCCCcCcCCCCCchhHhc----CCcEEeeccccCCChhhhhhcchhccCCCCceEECC
Confidence 4677899999999999 99 999999999999997777 99999999 999998877665
Q ss_pred -----------------------EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeee
Q 001126 348 -----------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTF 400 (1149)
Q Consensus 348 -----------------------tL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~rTk 400 (1149)
+|+|+|+.|++|.- +....+++.+. ..||||+|.|.| ....||+
T Consensus 430 ~~lr~~~~~~~~fdp~~~~~~~~~L~V~Visgq~~~l-~~~~~~~~~~~--------~~dpyV~Vei~G~p~D~~~~rTk 500 (581)
T PLN02222 430 DLLLKSGSDSDIFDPKATLPVKTTLRVTIYMGEGWYF-DFRHTHFDQYS--------PPDFYTRVGIAGVPGDTVMKKTK 500 (581)
T ss_pred HHhccCCccccccCCCCCCCccceEEEEEEEcccccC-CCCccccCCCC--------CCCeeEEEEEeccCCCcceeeeE
Confidence 48899999998752 11112122222 279999999975 2335999
Q ss_pred eecCCCCCeeceEEEEEccCCC-ceEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEE
Q 001126 401 VISNSEDPVWQQHFYVPVAHSA-AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTL 478 (1149)
Q Consensus 401 Vi~nt~nPvWNE~F~f~v~~~~-~~L~~~V~D~D~-~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L 478 (1149)
++.++.||+|||+|.|.+..++ +.|+|+|+|+|. .+++|||+++|||+.|+.|. +.++|.+.+|.+... ..|.+
T Consensus 501 ~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~~-a~Lfv 576 (581)
T PLN02222 501 TLEDNWIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYKS-VKLLV 576 (581)
T ss_pred ecCCCCCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCCC-eeEEE
Confidence 9999999999999999988775 899999999998 55889999999999999997 569999999998763 46666
Q ss_pred EEEe
Q 001126 479 SIQY 482 (1149)
Q Consensus 479 ~L~f 482 (1149)
.+.|
T Consensus 577 ~~~~ 580 (581)
T PLN02222 577 KVEF 580 (581)
T ss_pred EEEe
Confidence 6554
No 18
>PLN02952 phosphoinositide phospholipase C
Probab=99.91 E-value=2.1e-24 Score=258.82 Aligned_cols=176 Identities=19% Similarity=0.309 Sum_probs=145.6
Q ss_pred cCCCCCcccCCCCCcc-cCccccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeece--------------
Q 001126 285 LSSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG-------------- 347 (1149)
Q Consensus 285 ~~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~LlhG-------------- 347 (1149)
...+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. +||||||+ |+.++.++|.+|
T Consensus 375 ~~~~~~~v~~n~~~l~RiY---P~g~R~dSsNy~P~~~W~----~G~QmVAlN~Qt~d~~m~lN~g~F~~NG~cGYVlKP 447 (599)
T PLN02952 375 TTNGQDVVRFTQRNILRIY---PKGTRITSSNYKPLIGWM----HGAQMIAFNMQGYGKSLWLMHGMFRANGGCGYLKKP 447 (599)
T ss_pred HhhHHHHHHHhhhhceeeC---CCCCcCcCCCCCchhHhc----CccEEeeecccCCChHHHhhhchhccCCCCCceECC
Confidence 3567789999999999 99 999999999999997777 99999999 988887766554
Q ss_pred -----------------------EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeee
Q 001126 348 -----------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTF 400 (1149)
Q Consensus 348 -----------------------tL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~rTk 400 (1149)
+|+|+|++|++|+. +....+++.+.. .||||+|.+.| ....||+
T Consensus 448 ~~lr~~~~~~~~fdp~~~~~~~~~L~V~VisGq~l~l-p~~~~~~~~~~~--------~D~yV~V~i~G~p~D~~~~kTk 518 (599)
T PLN02952 448 DFLMKKGFHDEVFDPKKKLPVKKTLKVKVYLGDGWRL-DFSHTHFDSYSP--------PDFYTKMYIVGVPADNAKKKTK 518 (599)
T ss_pred HHHcccCCcccccCCCCCCCccceEEEEEEECcccCC-CCccccCCccCC--------CCceEEEEEeccCCCCcceeee
Confidence 58899999999863 222222223322 69999999976 2335999
Q ss_pred eecCCCCCeeceEEEEEccCCC-ceEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEE
Q 001126 401 VISNSEDPVWQQHFYVPVAHSA-AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTL 478 (1149)
Q Consensus 401 Vi~nt~nPvWNE~F~f~v~~~~-~~L~~~V~D~D~~-~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L 478 (1149)
++.++.||+|||+|.|.+..++ +.|+|+|+|+|.. +++|+|+++|||++|..|. +|++|.+.+|++.+ .++|
T Consensus 519 vi~nN~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l~---~a~L 592 (599)
T PLN02952 519 IIEDNWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKLK---NVRL 592 (599)
T ss_pred eccCCCCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCCC---CEEE
Confidence 9999999999999999988775 7899999999984 5889999999999999997 69999999999875 4556
Q ss_pred EEEe
Q 001126 479 SIQY 482 (1149)
Q Consensus 479 ~L~f 482 (1149)
.|+|
T Consensus 593 lv~f 596 (599)
T PLN02952 593 LMRF 596 (599)
T ss_pred EEEE
Confidence 5555
No 19
>PLN02228 Phosphoinositide phospholipase C
Probab=99.89 E-value=2.5e-23 Score=248.28 Aligned_cols=180 Identities=21% Similarity=0.308 Sum_probs=148.0
Q ss_pred CCCCCcccCCCCCcc-cCccccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeece---------------
Q 001126 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG--------------- 347 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~LlhG--------------- 347 (1149)
..+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. .||||||+ |+.+..++|.+|
T Consensus 340 ~~~~~~v~hNkr~l~RvY---P~g~RvdSSNy~P~~~W~----~G~QmVALN~QT~d~~M~lN~g~F~~NG~cGYVLKP~ 412 (567)
T PLN02228 340 TRGTDLVRFTQRNLVRIY---PKGTRVDSSNYDPHVGWT----HGAQMVAFNMQGHGKQLWIMQGMFRANGGCGYVKKPR 412 (567)
T ss_pred hhHHHHHHHhhhhceeeC---CCCCcCCCCCCCchhHhc----CccEEeeecccCCChHHHhhcCchhhCCCCCceeCch
Confidence 466889999999999 99 999999999999997777 99999999 999987776655
Q ss_pred -------------------EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE----EEeeeeeecC
Q 001126 348 -------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA----VVGRTFVISN 404 (1149)
Q Consensus 348 -------------------tL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~----~~~rTkVi~n 404 (1149)
+|+|+|++|++|+- ++...+++.+. ..||||+|.+.|. ...||+++.+
T Consensus 413 ~Lr~~~~~f~p~~~~p~~~~L~I~ViSGq~l~l-p~~~~~~~~~~--------~~DpyV~Vei~G~p~D~~~~rTk~~~n 483 (567)
T PLN02228 413 ILLDEHTLFDPCKRLPIKTTLKVKIYTGEGWDL-DFHLTHFDQYS--------PPDFFVKIGIAGVPRDTVSYRTETAVD 483 (567)
T ss_pred hhcccccccCCccCCCcCceEEEEEEECCccCC-CCCCCCCCCCC--------CCCcEEEEEEEecCCCCCcceeeccCC
Confidence 48999999999842 21111111111 2799999999752 2249999999
Q ss_pred CCCCee-ceEEEEEccCCC-ceEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEEEEE
Q 001126 405 SEDPVW-QQHFYVPVAHSA-AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQ 481 (1149)
Q Consensus 405 t~nPvW-NE~F~f~v~~~~-~~L~~~V~D~D~-~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~ 481 (1149)
+.||+| ||+|.|.+..++ +.|+|+|+|+|. .+++|||+++|||+.|+.|. +.++|++.+|+... .++|.+.+.
T Consensus 484 ~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~-~atLfv~~~ 559 (567)
T PLN02228 484 QWFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYK-NTRLLVSFA 559 (567)
T ss_pred CCCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCC-CeEEEEEEE
Confidence 999999 999999988775 899999999986 56889999999999999997 56999999999875 357888887
Q ss_pred eecc
Q 001126 482 YTPM 485 (1149)
Q Consensus 482 f~p~ 485 (1149)
+.+.
T Consensus 560 ~~~~ 563 (567)
T PLN02228 560 LDPP 563 (567)
T ss_pred EcCc
Confidence 7653
No 20
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.85 E-value=8.7e-21 Score=187.15 Aligned_cols=118 Identities=22% Similarity=0.387 Sum_probs=104.6
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecC-CCCCeeceEEEEEccCCCce
Q 001126 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISN-SEDPVWQQHFYVPVAHSAAE 424 (1149)
Q Consensus 346 hGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~n-t~nPvWNE~F~f~v~~~~~~ 424 (1149)
+|+|.|+|++|++|++.+ +|+ +||||+|.++++++ ||+|+.+ +.||+|||+|.|.+.+....
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~---------------sDPYv~i~lg~~~~-kT~v~~~~~~nP~WNe~F~f~v~~~~~~ 63 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTR---------------MDPYCRIRVGHAVY-ETPTAYNGAKNPRWNKTIQCTLPEGVDS 63 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCC---------------CCceEEEEECCEEE-EeEEccCCCCCCccCeEEEEEecCCCcE
Confidence 489999999999998777 565 89999999999887 9999877 89999999999999877778
Q ss_pred EEEEEEEccCCC-CcceeeEEEece-eeccCCceeeeEeeccCCCCCCCCCceeEEEEEe
Q 001126 425 VHFFVKDSDVVG-SELIGTVAIPVE-QIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1149)
Q Consensus 425 L~~~V~D~D~~~-ddfIG~v~Ipl~-~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f 482 (1149)
|.|+|+|+|..+ |++||.+.|++. .+..|...+.||+|...+|++ ..|.|+|+|+|
T Consensus 64 l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~--~~g~i~l~l~y 121 (121)
T cd04016 64 IYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGED--KEGMINLVFSY 121 (121)
T ss_pred EEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCccCCC--CceEEEEEEeC
Confidence 999999999855 789999999996 688888889999998777764 44799999987
No 21
>PF12357 PLD_C: Phospholipase D C terminal ; InterPro: IPR024632 Phospholipase D (PLD) catalyses the hydrolysis of the phosphodiester bond of glycerophospholipids to generate phosphatidic acid and a free head group. Phospholipase D activities have been detected in simple to complex organisms from viruses and bacteria to yeast, plants, and mammals []. In higher organisms, PLD specifically catalyzes the hydrolysis of phosphatidylcholine (PC) to phosphatidic acid (PA) and choline and is activated in response to stimulators of vesicle transport, endocytosis, exocytosis, cell migration, and mitosis. This entry represents the C-terminal domain of eukaryotic phospholipase D. The domain is approximately 70 amino acids in length and contains a conserved FPD sequence motif.
Probab=99.85 E-value=5.9e-22 Score=174.41 Aligned_cols=72 Identities=54% Similarity=1.156 Sum_probs=70.4
Q ss_pred ccccCCCcchhHHHHHhhhhhhhhhhhhhhhhcccccccccCcceeCCCCCccCCCCCCCCCCCCCcccccc
Q 001126 1069 EDCFGQPETLECVRKVRSVGENNWQQFAADDQSEMRSHLIKYPVEVDRKGKVRPIPGYETFPDVGGNIVGSF 1140 (1149)
Q Consensus 1069 ~~~~~~p~s~~~~~~~~~~~~~nw~~~a~~~~~~~~ghL~~~p~~~~~~g~~~~~~g~~~fpd~~~~i~g~~ 1140 (1149)
++.|.+|+|++|||+||++|++||++|+++++++|+|||++||+.|+.+|+|++|||+++||||+|+|+|++
T Consensus 2 e~~F~~PesleCVr~Vn~iae~nW~~y~~ee~~dl~GHLl~YPv~V~~dG~V~~LpG~e~FPDt~~~VlG~~ 73 (74)
T PF12357_consen 2 EECFLEPESLECVRRVNEIAEENWKQYASEEVTDLPGHLLKYPVQVDRDGKVTPLPGCEFFPDTGGKVLGSK 73 (74)
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHhhccccccCCCccccCCeEEcCCCCEeeCCCCCcCCCCCCcccCCC
Confidence 678999999999999999999999999999999999999999999999999999999999999999999985
No 22
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.84 E-value=5.4e-21 Score=224.51 Aligned_cols=175 Identities=23% Similarity=0.377 Sum_probs=145.0
Q ss_pred CCCCCcccCCCCCcc-cCccccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeece---------------
Q 001126 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG--------------- 347 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~LlhG--------------- 347 (1149)
+.+.+|.-||++++| .| |+|.|+|||||+|++||+ +|+||||+ |++.+++.|-++
T Consensus 972 q~~~~lL~ynr~qlSRVY---PkGqRldSsNy~P~pmWn----~GsqmVALN~QTgDKpMQmNqa~F~~ngrcGYvLqPs 1044 (1267)
T KOG1264|consen 972 QKPVDLLKYNRKQLSRVY---PKGQRLDSSNYDPFPMWN----CGSQMVALNFQTGDKPMQMNQALFSLNGRCGYVLQPS 1044 (1267)
T ss_pred hccccccccccccceeec---CCCcccccCCCCCccccc----ccceeEEeeccCCCchhhhhHHHhhcCCceeeEecch
Confidence 678899999999999 99 999999999999999999 99999999 999998876555
Q ss_pred ---------------------EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC-----EEEeeeee
Q 001126 348 ---------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-----AVVGRTFV 401 (1149)
Q Consensus 348 ---------------------tL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g-----~~~~rTkV 401 (1149)
+|.|.|+.|+.|+.... | ..-|||.|.|-| .+.++|.|
T Consensus 1045 ~Mrte~fdP~n~e~~~~l~p~~lsv~vigaRHL~k~gr-~---------------i~cPfVevEiiGa~~Dt~~~~t~~V 1108 (1267)
T KOG1264|consen 1045 SMRTEKFDPMNPESQRGLLPMTLSVKVLGARHLPKLGR-S---------------IACPFVEVEIIGAEYDTNKFKTTVV 1108 (1267)
T ss_pred hcccccCCCCChHHhccccceEEEEEEeeccccccCCC-C---------------ccCCcEEEEEeccccCCCceEEEEe
Confidence 69999999999984321 1 145999999966 34457778
Q ss_pred ecCCCCCeec-eEEEEEccCCC-ceEEEEEEEccCCCCc-ceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEE
Q 001126 402 ISNSEDPVWQ-QHFYVPVAHSA-AEVHFFVKDSDVVGSE-LIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTL 478 (1149)
Q Consensus 402 i~nt~nPvWN-E~F~f~v~~~~-~~L~~~V~D~D~~~dd-fIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L 478 (1149)
+.|++||+|| |+|+|.+..+. +.|+|.|+|.|++++. |||+++.||..|..|- +-+||.+.-.+-. ..++|.|
T Consensus 1109 ~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySEdl-ELaSLLv 1184 (1267)
T KOG1264|consen 1109 NDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGF---RSVPLKNGYSEDL-ELASLLV 1184 (1267)
T ss_pred ccCCCCCCCCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhhccc---eeeecccCchhhh-hhhhhee
Confidence 8899999999 99999999886 8999999999997754 9999999999999986 4588866544433 2346677
Q ss_pred EEEeecccc
Q 001126 479 SIQYTPMER 487 (1149)
Q Consensus 479 ~L~f~p~~~ 487 (1149)
.++..|+..
T Consensus 1185 ~i~m~~~~~ 1193 (1267)
T KOG1264|consen 1185 FIEMRPVLE 1193 (1267)
T ss_pred eeEeccccC
Confidence 777666554
No 23
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.82 E-value=1.2e-19 Score=180.36 Aligned_cols=114 Identities=24% Similarity=0.308 Sum_probs=104.0
Q ss_pred EEEEEEEeeC---CCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCCCceE
Q 001126 349 LDIWIYSAKN---LPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEV 425 (1149)
Q Consensus 349 L~VtVieAk~---L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~~~~L 425 (1149)
|+|+|++|+| |+.+|..|+ +||||+|.+++++. ||++++++.||+|||+|.|++.+....|
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~---------------sDPYv~i~~g~~~~-rTk~~~~~~nP~WnE~f~f~v~~~~~~l 65 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGS---------------TDAYCVAKYGPKWV-RTRTVEDSSNPRWNEQYTWPVYDPCTVL 65 (126)
T ss_pred eEEEEEEeECCccccccccCCC---------------CCeeEEEEECCEEe-EcCcccCCCCCcceeEEEEEecCCCCEE
Confidence 8999999999 888888876 99999999998876 9999999999999999999998887899
Q ss_pred EEEEEEccCC-------CCcceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEE
Q 001126 426 HFFVKDSDVV-------GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTL 478 (1149)
Q Consensus 426 ~~~V~D~D~~-------~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L 478 (1149)
.|+|||+|.. +|++||++.|+++++..+...+.||+|.+.++++.+..|+|++
T Consensus 66 ~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 66 TVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred EEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 9999999986 7999999999999999998889999999877666677788875
No 24
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.81 E-value=2.9e-19 Score=181.33 Aligned_cols=123 Identities=25% Similarity=0.399 Sum_probs=109.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCCCceEE
Q 001126 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVH 426 (1149)
Q Consensus 347 GtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~~~~L~ 426 (1149)
-.|.|+|+||++|+.+ .|+||+|.+++++++||+|+.++.||.|||+|.|.+.+....|+
T Consensus 11 ~sL~v~V~EAk~Lp~~--------------------~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~ 70 (146)
T cd04013 11 NSLKLWIIEAKGLPPK--------------------KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVIT 70 (146)
T ss_pred EEEEEEEEEccCCCCc--------------------CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEE
Confidence 4699999999999853 48999999999999999999999999999999999998888999
Q ss_pred EEEEEcc-CC----CCcceeeEEEeceeeccCCceeeeEeeccCCCCC-------CCCCceeEEEEEeecccccc
Q 001126 427 FFVKDSD-VV----GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKP-------CKPGATLTLSIQYTPMERLS 489 (1149)
Q Consensus 427 ~~V~D~D-~~----~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~-------~~~~g~L~L~L~f~p~~~~~ 489 (1149)
|.|++.+ .. ++++||.+.||+++|..|...+.||+|++.++++ .+.+++|||+++|.++...+
T Consensus 71 v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~~lP 145 (146)
T cd04013 71 VNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTRVLP 145 (146)
T ss_pred EEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEeeeCC
Confidence 9996543 32 5789999999999999999999999999999887 66778999999999886554
No 25
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.80 E-value=5.4e-19 Score=173.83 Aligned_cols=119 Identities=23% Similarity=0.363 Sum_probs=107.5
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCCCceEEEE
Q 001126 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFF 428 (1149)
Q Consensus 349 L~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~~~~L~~~ 428 (1149)
|+|+|++|++|+..|..+. +||||+|.+++....||+++.++.||+|||+|.|.+......|.|+
T Consensus 2 L~v~v~~a~~L~~~d~~g~---------------~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~ 66 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGT---------------SDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIK 66 (121)
T ss_pred eEEEEEEeeCCCCcCCCCC---------------CCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEE
Confidence 8999999999999888776 8999999999877789999999999999999999998777899999
Q ss_pred EEEccCC-CCcceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEEEEEeec
Q 001126 429 VKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1149)
Q Consensus 429 V~D~D~~-~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f~p 484 (1149)
|||+|.. ++++||++.+++.++..+...+.|++|.+.++. +..|+|+|.++|.|
T Consensus 67 v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~--~~~G~l~l~~~~~~ 121 (121)
T cd04042 67 VFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSD--EDLGYISLVVTLTP 121 (121)
T ss_pred EEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCCc--cCceEEEEEEEECC
Confidence 9999996 789999999999999988888999999876653 35689999999976
No 26
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.80 E-value=4e-19 Score=176.08 Aligned_cols=117 Identities=21% Similarity=0.374 Sum_probs=101.6
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccC------CC
Q 001126 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAH------SA 422 (1149)
Q Consensus 349 L~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~------~~ 422 (1149)
|+|+|++|+||+.+|..|. +||||+|.+++.+. ||++++++.||+|||+|.|.+.. ..
T Consensus 1 ~~V~V~~A~~L~~~d~~g~---------------~dpYv~v~l~~~~~-kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~ 64 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGT---------------NDAYVIIQLGKEKY-STSVKEKTTSPVWKEECSFELPGLLSGNGNR 64 (126)
T ss_pred CEEEEEECcCCcCCCCCcC---------------CCceEEEEECCeee-eeeeecCCCCCEeCceEEEEecCcccCCCcC
Confidence 5799999999998887775 89999999988775 99999999999999999999876 35
Q ss_pred ceEEEEEEEccCCC-CcceeeEEEeceeec--cCCceeeeEeeccCCCCCCCCCceeEEEEE
Q 001126 423 AEVHFFVKDSDVVG-SELIGTVAIPVEQIY--SGGKVEGTYPVLNGSGKPCKPGATLTLSIQ 481 (1149)
Q Consensus 423 ~~L~~~V~D~D~~~-ddfIG~v~Ipl~~L~--~G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~ 481 (1149)
..|.|+|||++..+ |++||++.|+++++. .+...+.||+|.+..++..+..|+|+|+|+
T Consensus 65 ~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 65 ATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred CEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 78999999999854 899999999999988 566778999998766655556789999875
No 27
>PRK05443 polyphosphate kinase; Provisional
Probab=99.79 E-value=4.8e-18 Score=209.10 Aligned_cols=274 Identities=16% Similarity=0.143 Sum_probs=189.8
Q ss_pred cchhhHHHHHHHHHHHhcc-----ceEEEEeeccceeeEEeCCCCchHHHHHHHHHHHHhcCCeEEEEEecCCCcccccc
Q 001126 541 YVHGKCWYDICNAISQAQR-----LIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILG 615 (1149)
Q Consensus 541 y~~~~~f~al~eAI~~Ak~-----sI~I~~W~~~p~i~L~r~~~~~~g~rL~dlL~~kA~rGVkVrILVwD~~gs~~~~g 615 (1149)
+.|=+.|.-+++.|++|.+ +|.|+-|.+. ....|.++|++||++||+|+||| +... .
T Consensus 344 h~PY~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~------------~~s~iv~aL~~Aa~~Gk~V~vlv-e~ka-r---- 405 (691)
T PRK05443 344 HHPYESFDPVVEFLRQAAADPDVLAIKQTLYRTS------------KDSPIVDALIEAAENGKQVTVLV-ELKA-R---- 405 (691)
T ss_pred ECCccCchHHHHHHHHhccCCCeeEEEEEEEEec------------CCHHHHHHHHHHHHcCCEEEEEE-ccCc-c----
Confidence 3444689999999999998 8999988541 23789999999999999999998 4321 0
Q ss_pred cccccccccccHHHHHHhccCCcEEEEccCccccccccccccccccccccccceEEecCCCCCCCccEEEEEcccccCCC
Q 001126 616 YKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDG 695 (1149)
Q Consensus 616 ~k~~g~m~~~~~~t~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~rHHQKiVVVD~~~~~~~r~~vAFVGGiNL~dg 695 (1149)
.....+..+.+.|+.+||+|+.-.. .+..|.|+++||++.++ +-+..|++|+.|+...
T Consensus 406 -----fde~~n~~~~~~L~~aGv~V~y~~~----------------~~k~HaK~~lid~~e~~-~~~~~~~iGTgN~n~~ 463 (691)
T PRK05443 406 -----FDEEANIRWARRLEEAGVHVVYGVV----------------GLKTHAKLALVVRREGG-GLRRYVHLGTGNYNPK 463 (691)
T ss_pred -----ccHHHHHHHHHHHHHcCCEEEEccC----------------CccceeEEEEEEeecCC-ceeEEEEEcCCCCCcc
Confidence 0111223566678899999965321 23579999999996433 3445999999999884
Q ss_pred CCCCCCCCccccccccCCCCCCCCccccCCCCCCCCCCeeeeeeE-EcCHHHHHHHHHHHHHHHhhcCCCCccccCCchh
Q 001126 696 RYDNPHHPLFRTLQTLHKDDYHNPTFTQGNTTGCPREPWHDLHSK-IDGPAAYDVLTNFEERWRKASKPHGIKKLKSGDD 774 (1149)
Q Consensus 696 RwDt~~H~l~~~~~~~~~~Dy~np~~~~~~~~~~pr~PWHDv~vr-I~GPaa~Dl~~~F~qrWn~~t~~~~~~~l~~~~~ 774 (1149)
. ...|.|+.+. .++..+.|+...|...|....... +
T Consensus 464 s----------------------------------~~~y~D~~l~t~d~~i~~d~~~~F~~l~~~~~~~~-------~-- 500 (691)
T PRK05443 464 T----------------------------------ARLYTDLSLLTADPEIGEDVTRLFNYLTGYSRPVK-------L-- 500 (691)
T ss_pred h----------------------------------hhhccceeEEEeChHHHHHHHHHHHHHhCcCcccc-------c--
Confidence 1 1257899998 556689999999998876421100 0
Q ss_pred hhhhhccCCCccCCCCCCCcccCCCCCcEEEEEeecCCCccccCCCChhhhcccccccCcccchhhHHHHHHHHHHHhhc
Q 001126 775 ALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQ 854 (1149)
Q Consensus 775 ~l~~~~~~p~~~~~~~~p~~~~~~~~~~~vQvlRS~~~~s~~~~P~~p~~~~~~~l~~g~~~~~e~sI~~ayl~aI~~Ak 854 (1149)
-.++-+ |.+ ....|.+.+...|.+||
T Consensus 501 -----------------------------~~l~~s---------P~~----------------~~~~l~~~i~~ei~~Ak 526 (691)
T PRK05443 501 -----------------------------RKLLVS---------PFT----------------LRERLLELIDREIANAR 526 (691)
T ss_pred -----------------------------cEEeec---------Ccc----------------HHHHHHHHHHHHHHHHh
Confidence 000000 111 23468889999999999
Q ss_pred c----EEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEe-------cCCCCCCCCCchhHHH
Q 001126 855 H----FIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVI-------PMWPEGVPTGAATQRI 923 (1149)
Q Consensus 855 ~----fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~aira~rgv~V~IVl-------P~~Peg~p~~~s~~~i 923 (1149)
+ .|+|.+.||. +. .+..+|..| +.+||+|.|++ |..|+ .+++..
T Consensus 527 ~G~~a~I~ik~n~l~-d~-----------------~ii~aL~~A--s~~GV~V~liVRGiC~l~pgipg-----~sd~i~ 581 (691)
T PRK05443 527 AGKPARIIAKMNSLV-DP-----------------QIIDALYEA--SQAGVKIDLIVRGICCLRPGVPG-----LSENIR 581 (691)
T ss_pred cCCCCEEEEEcCCCC-CH-----------------HHHHHHHHH--HHCCCeEEEEEecccccCCCCCC-----CCCCEE
Confidence 9 9999999954 42 456666665 47899999999 22221 112111
Q ss_pred HHHHHhhhhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCcccceeeeEE
Q 001126 924 LFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKG 1003 (1149)
Q Consensus 924 l~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~Lr~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iYVHSKl 1003 (1149)
+ .+++.+++++ +++++. -..
T Consensus 582 v-----------~s~v~r~Leh-~rIy~f----------------------------------------------~~g-- 601 (691)
T PRK05443 582 V-----------RSIVGRFLEH-SRIYYF----------------------------------------------GNG-- 601 (691)
T ss_pred E-----------HHHHHHHHhc-CEEEEE----------------------------------------------eCC--
Confidence 1 2566677663 455420 000
Q ss_pred EEEeCeEEEEcccccccCCCCCCCCcceEEEEeCcchh
Q 001126 1004 MIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1041 (1149)
Q Consensus 1004 mIVDD~~viIGSANiN~RSm~G~~DsEiav~i~dp~~~ 1041 (1149)
||+++.||||||+.|||. ++.|+++.|+|+.+.
T Consensus 602 ---d~~~~~iGSAn~d~Rsl~--~r~Ev~~~i~d~~~~ 634 (691)
T PRK05443 602 ---GDEEVYISSADWMPRNLD--RRVEVLFPILDPRLK 634 (691)
T ss_pred ---CCcEEEEECCCCCccccc--ceEEEeEEEeCHHHH
Confidence 899999999999999998 999999999998753
No 28
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.76 E-value=5.8e-18 Score=173.33 Aligned_cols=123 Identities=18% Similarity=0.226 Sum_probs=105.6
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecC-CCCCeeceEEEEEccCCC-ceEE
Q 001126 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISN-SEDPVWQQHFYVPVAHSA-AEVH 426 (1149)
Q Consensus 349 L~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~n-t~nPvWNE~F~f~v~~~~-~~L~ 426 (1149)
|+|+|++|++|+.+|.+|. +||||+|.++++.. ||+++.+ +.||+|||+|.|.+.++. ..|.
T Consensus 2 L~V~Vi~A~~L~~~d~~g~---------------sDPYV~v~l~~~~~-kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~ 65 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRV---------------PEVFVKAQLGNQVL-RTRPSQTRNGNPSWNEELMFVAAEPFEDHLI 65 (150)
T ss_pred EEEEEEEeECCCCCCCCCC---------------CCeEEEEEECCEEe-eeEeccCCCCCCcccCcEEEEecCccCCeEE
Confidence 8999999999999998876 89999999999664 9999977 699999999999997654 6899
Q ss_pred EEEEEccCC-CCcceeeEEEeceeeccC----CceeeeEeeccCCC-----CCCCCCceeEEEEEeecccc
Q 001126 427 FFVKDSDVV-GSELIGTVAIPVEQIYSG----GKVEGTYPVLNGSG-----KPCKPGATLTLSIQYTPMER 487 (1149)
Q Consensus 427 ~~V~D~D~~-~ddfIG~v~Ipl~~L~~G----~~~~~W~pL~~~~G-----k~~~~~g~L~L~L~f~p~~~ 487 (1149)
|+|+|++.. ++++||++.|+|+++..+ ...+.||+|.+..| ++.+..|+|+|+|.|.....
T Consensus 66 v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~ 136 (150)
T cd04019 66 LSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYH 136 (150)
T ss_pred EEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcce
Confidence 999999874 689999999999999754 45689999987765 55567789999999986443
No 29
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.76 E-value=1.1e-17 Score=166.22 Aligned_cols=119 Identities=19% Similarity=0.337 Sum_probs=100.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCCC-ceE
Q 001126 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA-AEV 425 (1149)
Q Consensus 347 GtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~~-~~L 425 (1149)
..|+|+|++|++|+..+ . +||||+|.+++...+||+++ ++.||+|||+|.|.+.... ..+
T Consensus 4 ~~L~V~Vi~A~~L~~~~---~---------------~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l 64 (126)
T cd08400 4 RSLQLNVLEAHKLPVKH---V---------------PHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSF 64 (126)
T ss_pred eEEEEEEEEeeCCCCCC---C---------------CCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEE
Confidence 36999999999998532 2 89999999998777899985 6899999999999976543 678
Q ss_pred EEEEEEccC-CCCcceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEEEEEeec
Q 001126 426 HFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1149)
Q Consensus 426 ~~~V~D~D~-~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f~p 484 (1149)
+|.|+|++. .++++||++.||+.++..|...+.||+|...+++..+..|+|+|+|+|.+
T Consensus 65 ~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 65 TISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred EEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 999999987 46899999999999999988889999998765433456689999999976
No 30
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.76 E-value=9.1e-18 Score=165.73 Aligned_cols=118 Identities=25% Similarity=0.342 Sum_probs=100.7
Q ss_pred EEEEEEEeeCCCCCCC-CCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCCCceEEE
Q 001126 349 LDIWIYSAKNLPNMDM-FHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 427 (1149)
Q Consensus 349 L~VtVieAk~L~~~D~-~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~~~~L~~ 427 (1149)
|+|+|++|+||+.++. .|. +||||+|.++++..+||+++++|.||+|||+|.|.+.+....|.|
T Consensus 2 l~v~v~~a~~L~~~~~~~g~---------------sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~ 66 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKM---------------RDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSF 66 (121)
T ss_pred eEEEEEEccCCCCCCCCCCC---------------cCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEE
Confidence 7899999999998753 333 899999999887778999999999999999999999876689999
Q ss_pred EEEEccCC-CCcceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEEEEEe
Q 001126 428 FVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1149)
Q Consensus 428 ~V~D~D~~-~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f 482 (1149)
.|||++.. ++++||++.++++++..+...+.||+|.... ...+..|+|+|+++|
T Consensus 67 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~-~~~~~~G~i~l~~~~ 121 (121)
T cd08401 67 YIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQPVD-ADSEVQGKVHLELRL 121 (121)
T ss_pred EEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEEEEccC-CCCcccEEEEEEEEC
Confidence 99999985 6899999999999999887889999996432 222346899999875
No 31
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.75 E-value=5e-18 Score=165.90 Aligned_cols=116 Identities=22% Similarity=0.432 Sum_probs=100.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecC-CCCCeeceEEEEEccCC-Cce
Q 001126 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISN-SEDPVWQQHFYVPVAHS-AAE 424 (1149)
Q Consensus 347 GtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~n-t~nPvWNE~F~f~v~~~-~~~ 424 (1149)
|+|+|+|++|++|++.|..+. +||||+|.+++.. +||+++.+ +.||+|||+|.|.+... ...
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~---------------~dpyv~v~~~~~~-~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~ 64 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDK---------------QDPYCVLRIGGVT-KKTKTDFRGGQHPEWDEELRFEITEDKKPI 64 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCC---------------CCceEEEEECCCc-cccccccCCCCCCccCceEEEEecCCCCCE
Confidence 789999999999999887776 8999999999865 59998765 79999999999999875 478
Q ss_pred EEEEEEEccCCCCcceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEEEEEe
Q 001126 425 VHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1149)
Q Consensus 425 L~~~V~D~D~~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f 482 (1149)
|.|+|||++..++++||++.+++.++..+...+.|++|.. +|+ ..|+|+|+|+|
T Consensus 65 l~i~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~-~~~---~~G~i~l~l~f 118 (118)
T cd08681 65 LKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELTL-KGR---YAGEVYLELTF 118 (118)
T ss_pred EEEEEEeCCCCCCcceEEEEEecHHHhhcCCCCCcEEecc-CCc---EeeEEEEEEEC
Confidence 9999999998779999999999999987777789999964 443 34799999987
No 32
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=99.75 E-value=2.4e-17 Score=201.89 Aligned_cols=273 Identities=16% Similarity=0.174 Sum_probs=183.8
Q ss_pred chhhHHHHHHHHHHHhcc-----ceEEEEeeccceeeEEeCCCCchHHHHHHHHHHHHhcCCeEEEEEecCCCccccccc
Q 001126 542 VHGKCWYDICNAISQAQR-----LIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGY 616 (1149)
Q Consensus 542 ~~~~~f~al~eAI~~Ak~-----sI~I~~W~~~p~i~L~r~~~~~~g~rL~dlL~~kA~rGVkVrILVwD~~gs~~~~g~ 616 (1149)
.|=+.|+.+++.|++|.+ +|.|+-|.+. . ..+|.++|++||++||+|+||| +-.. ..+
T Consensus 336 ~PY~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~~-------~-----~s~ii~aL~~Aa~~Gk~V~v~v-eLkA---rfd- 398 (672)
T TIGR03705 336 HPYESFDPVVEFLRQAAEDPDVLAIKQTLYRTS-------K-----DSPIIDALIEAAENGKEVTVVV-ELKA---RFD- 398 (672)
T ss_pred CCccCHHHHHHHHHHHhcCCCceEEEEEEEEec-------C-----CcHHHHHHHHHHHcCCEEEEEE-Eehh---hcc-
Confidence 334678999999999998 8999988542 1 2689999999999999999998 5110 000
Q ss_pred ccccccccccHHHHHHhccCCcEEEEccCccccccccccccccccccccccceEEecCCCCCCCccEEEEEcccccCCCC
Q 001126 617 KMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGR 696 (1149)
Q Consensus 617 k~~g~m~~~~~~t~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~rHHQKiVVVD~~~~~~~r~~vAFVGGiNL~dgR 696 (1149)
. ..+..+.+.|+.+|++|..-- ..+..|.|+++||.+.++ +-+..+++|.-|.+..
T Consensus 399 ---e---~~ni~wa~~le~aG~~viyg~----------------~~~k~H~K~~li~r~~~~-~~~~y~~igTgN~n~~- 454 (672)
T TIGR03705 399 ---E---EANIRWARRLEEAGVHVVYGV----------------VGLKTHAKLALVVRREGG-ELRRYVHLGTGNYHPK- 454 (672)
T ss_pred ---c---hhhHHHHHHHHHcCCEEEEcC----------------CCeeeeeEEEEEEEeeCC-ceEEEEEecCCCCCCc-
Confidence 0 122356678889999997621 134689999999986322 2234677776666553
Q ss_pred CCCCCCCccccccccCCCCCCCCccccCCCCCCCCCCeeeeeeE-EcCHHHHHHHHHHHHHHHhhcCCCCccccCCchhh
Q 001126 697 YDNPHHPLFRTLQTLHKDDYHNPTFTQGNTTGCPREPWHDLHSK-IDGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDA 775 (1149)
Q Consensus 697 wDt~~H~l~~~~~~~~~~Dy~np~~~~~~~~~~pr~PWHDv~vr-I~GPaa~Dl~~~F~qrWn~~t~~~~~~~l~~~~~~ 775 (1149)
-...|+|+++. .++..+.|+...|...|....... +..
T Consensus 455 ---------------------------------ta~~y~D~~l~t~~~~i~~d~~~~F~~l~~~~~~~~-------~~~- 493 (672)
T TIGR03705 455 ---------------------------------TARLYTDLSLFTADPEIGRDVARVFNYLTGYSRPPK-------FKH- 493 (672)
T ss_pred ---------------------------------ccccccceeEEEeChHHHHHHHHHHHHhhCCCcchh-------hHH-
Confidence 01368999998 899999999999998876321110 000
Q ss_pred hhhhccCCCccCCCCCCCcccCCCCCcEEEEEeecCCCccccCCCChhhhcccccccCcccchhhHHHHHHHHHHHhhcc
Q 001126 776 LLRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQH 855 (1149)
Q Consensus 776 l~~~~~~p~~~~~~~~p~~~~~~~~~~~vQvlRS~~~~s~~~~P~~p~~~~~~~l~~g~~~~~e~sI~~ayl~aI~~Ak~ 855 (1149)
++ + -|.. .+..+.+.+...|.+||+
T Consensus 494 l~-------------------------------~--------~P~~----------------~~~~~~~~i~~ei~~Ak~ 518 (672)
T TIGR03705 494 LL-------------------------------V--------SPFT----------------LRKRLLELIDREIENARA 518 (672)
T ss_pred HH-------------------------------h--------Ccch----------------HHHHHHHHHHHHHHHHHc
Confidence 00 0 0111 234688889999999999
Q ss_pred ----EEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecC---CCCCCCCCchhHHHHHHHH
Q 001126 856 ----FIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPM---WPEGVPTGAATQRILFWQH 928 (1149)
Q Consensus 856 ----fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~aira~rgv~V~IVlP~---~Peg~p~~~s~~~il~~~~ 928 (1149)
+|+|.++||. +. ++..+|..| +++||+|.+++-+ +.-|.|+ .+++..+
T Consensus 519 g~~~~I~ik~n~l~-D~-----------------~ii~aL~~A--s~aGV~V~LivRGiCcL~pgipg-~sd~i~v---- 573 (672)
T TIGR03705 519 GKPARIIAKMNSLV-DP-----------------DLIDALYEA--SQAGVKIDLIVRGICCLRPGVPG-LSENIRV---- 573 (672)
T ss_pred CCCCEEEEEcCCCC-CH-----------------HHHHHHHHH--HHCCCeEEEEEecccccCCCCCC-CCCCEEE----
Confidence 9999999955 42 456666665 4789999999911 0001110 1111111
Q ss_pred hhhhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCcccceeeeEEEEE--
Q 001126 929 KTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIV-- 1006 (1149)
Q Consensus 929 rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~Lr~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iYVHSKlmIV-- 1006 (1149)
.+++.++++ |+|+.+.
T Consensus 574 -------~siv~r~Le-------------------------------------------------------h~rIy~f~~ 591 (672)
T TIGR03705 574 -------RSIVGRFLE-------------------------------------------------------HSRIYYFGN 591 (672)
T ss_pred -------EEEhhHhhC-------------------------------------------------------cCEEEEEeC
Confidence 124444444 4444443
Q ss_pred -eCeEEEEcccccccCCCCCCCCcceEEEEeCcch
Q 001126 1007 -DDEYVILGSANINQRSMEGTRDTEIAMGAYQPEY 1040 (1149)
Q Consensus 1007 -DD~~viIGSANiN~RSm~G~~DsEiav~i~dp~~ 1040 (1149)
||+++.||||||+.|||. ++.|+++.|+|+..
T Consensus 592 ~~d~~~~igSAn~m~Rnl~--~r~E~~~~i~d~~~ 624 (672)
T TIGR03705 592 GGEEKVYISSADWMTRNLD--RRVEVLFPIEDPTL 624 (672)
T ss_pred CCCcEEEEECCCCCCCccc--ceEEEEEEEcCHHH
Confidence 688999999999999998 99999999999874
No 33
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.74 E-value=1.3e-17 Score=165.52 Aligned_cols=120 Identities=20% Similarity=0.295 Sum_probs=101.8
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCCC----c
Q 001126 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA----A 423 (1149)
Q Consensus 348 tL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~~----~ 423 (1149)
.|.|+|++|++|+..|..+. +||||+|.+++++. ||++++++.||+|||+|.|.+.+.. .
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~---------------~dpyv~v~~~~~~~-rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~ 64 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGS---------------SSAYVELDFDGQKK-RTRTKPKDLNPVWNEKLVFNVSDPSRLSNL 64 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCC---------------cCcEEEEEECCEEe-cceeEcCCCCCccceEEEEEccCHHHccCC
Confidence 38999999999998887665 89999999999875 9999999999999999999987643 5
Q ss_pred eEEEEEEEccCC--CCcceeeEEEeceeec-cCCceeeeEeeccCCCCCCCCCceeEEEEEeec
Q 001126 424 EVHFFVKDSDVV--GSELIGTVAIPVEQIY-SGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1149)
Q Consensus 424 ~L~~~V~D~D~~--~ddfIG~v~Ipl~~L~-~G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f~p 484 (1149)
.|+|+|||++.. +++|||++.|+++++. .+.....||+|..+ ++..+..|+|+|+++|+.
T Consensus 65 ~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~-~~~~~~~G~l~l~~~~~~ 127 (127)
T cd04022 65 VLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKR-GLFSRVRGEIGLKVYITD 127 (127)
T ss_pred eEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeC-CCCCCccEEEEEEEEEcC
Confidence 799999999875 6899999999999998 56777899999753 322234579999999863
No 34
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.73 E-value=3.7e-17 Score=162.18 Aligned_cols=122 Identities=16% Similarity=0.307 Sum_probs=102.9
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC-EEEeeeeeecCCCCCeeceEEEEEccCCCceEEE
Q 001126 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-AVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 427 (1149)
Q Consensus 349 L~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g-~~~~rTkVi~nt~nPvWNE~F~f~v~~~~~~L~~ 427 (1149)
|.|+|++|+||+. ..+. +||||++.+++ ....||+++.++.||+|||+|.|.+......|.|
T Consensus 1 l~v~v~~A~~L~~--~~g~---------------~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~ 63 (126)
T cd08678 1 LLVKNIKANGLSE--AAGS---------------SNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLF 63 (126)
T ss_pred CEEEEEEecCCCC--CCCC---------------cCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEE
Confidence 6899999999986 4444 89999999975 2335999999999999999999999766678999
Q ss_pred EEEEccCC-CCcceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEEEEEeecccc
Q 001126 428 FVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMER 487 (1149)
Q Consensus 428 ~V~D~D~~-~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f~p~~~ 487 (1149)
+|||++.. .+++||++.+++.+|..+...+.|++|....++..+..|+|+|.++|.+.++
T Consensus 64 ~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~~ 124 (126)
T cd08678 64 EVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPAE 124 (126)
T ss_pred EEEECCCCCCCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecccc
Confidence 99999985 4889999999999999887778999997654433345689999999987653
No 35
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.73 E-value=3e-17 Score=162.05 Aligned_cols=113 Identities=21% Similarity=0.379 Sum_probs=97.5
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCC-CceEEE
Q 001126 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHF 427 (1149)
Q Consensus 349 L~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~-~~~L~~ 427 (1149)
|.|+|++|++|+.+ . +||||+|.+.+.+ +||++++++.||+|||+|.|.+.+. ...|.|
T Consensus 2 L~V~Vi~a~~L~~~----~---------------~Dpyv~v~l~~~~-~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~ 61 (121)
T cd08378 2 LYVRVVKARGLPAN----S---------------NDPVVEVKLGNYK-GSTKAIERTSNPEWNQVFAFSKDRLQGSTLEV 61 (121)
T ss_pred EEEEEEEecCCCcc----c---------------CCCEEEEEECCcc-ccccccCCCCCCccceEEEEEcCCCcCCEEEE
Confidence 89999999999865 3 8999999998865 5999999999999999999998874 578999
Q ss_pred EEEEccCCCCcceeeEEEeceeeccC-----CceeeeEeeccCCCCCCCCCceeEEEEEee
Q 001126 428 FVKDSDVVGSELIGTVAIPVEQIYSG-----GKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1149)
Q Consensus 428 ~V~D~D~~~ddfIG~v~Ipl~~L~~G-----~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f~ 483 (1149)
+|||+|..++++||++.++++++..+ ...+.||+|.+.++. +..|+|+|+++|-
T Consensus 62 ~v~d~d~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~--~~~G~i~l~~~~~ 120 (121)
T cd08378 62 SVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGG--RVGGELMLAVWFG 120 (121)
T ss_pred EEEeCCCCcCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCC--ccceEEEEEEEec
Confidence 99999988899999999999998753 235689999876653 3458999999983
No 36
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.72 E-value=5.9e-17 Score=158.34 Aligned_cols=118 Identities=25% Similarity=0.400 Sum_probs=102.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCCCceEE
Q 001126 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVH 426 (1149)
Q Consensus 347 GtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~~~~L~ 426 (1149)
|+|+|+|++|++|+.++..+. +||||+|.+.+.. +||++++++.||.|||+|.|.+.+....|.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~---------------~dPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~ 64 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGK---------------SDPFCVLELVNAR-LQTHTIYKTLNPEWNKIFTFPIKDIHDVLE 64 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCC---------------CCcEEEEEECCEe-eecceecCCcCCccCcEEEEEecCcCCEEE
Confidence 789999999999998887765 8999999998876 499999999999999999999987678999
Q ss_pred EEEEEccC-CCCcceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEEEEEee
Q 001126 427 FFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1149)
Q Consensus 427 ~~V~D~D~-~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f~ 483 (1149)
|+|+|++. .++++||++.+++.++..+. ..|++|.+..++. +..|+|.|+|+|.
T Consensus 65 ~~v~d~~~~~~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~-~~~G~i~l~~~~~ 119 (119)
T cd08377 65 VTVYDEDKDKKPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRT-RAKGSILLEMDVI 119 (119)
T ss_pred EEEEECCCCCCCceeeEEEEEHHHCCCCC--ceEEECcccCCCC-ceeeEEEEEEEeC
Confidence 99999988 56899999999999998664 5899998665443 2457999999873
No 37
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.72 E-value=6.7e-17 Score=161.49 Aligned_cols=126 Identities=21% Similarity=0.379 Sum_probs=101.9
Q ss_pred eeceEEEEEEEEeeCCCCCCCCCcc-ccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCCC
Q 001126 344 LLHGNLDIWIYSAKNLPNMDMFHKT-LGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA 422 (1149)
Q Consensus 344 LlhGtL~VtVieAk~L~~~D~~g~~-~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~~ 422 (1149)
+|.|+|+|+|++|++|...|..+.. +.+. ....+||||+|.+++++++||+++.++.||+|||+|.|.+. ..
T Consensus 1 ~~~g~l~V~v~~a~~L~~~d~~~~~~~~~~------~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~ 73 (132)
T cd04014 1 MFTGTLKIKICEAVDLKPTDWSTRHAVPKK------GSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NG 73 (132)
T ss_pred CcceEEEEEEEEecCCCCCCchhhhccccc------CccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CC
Confidence 4679999999999999988763210 0000 00128999999999988889999999999999999999997 45
Q ss_pred ceEEEEEEEccCC-CCcceeeEEEeceeecc--CCceeeeEeeccCCCCCCCCCceeEEEEEeec
Q 001126 423 AEVHFFVKDSDVV-GSELIGTVAIPVEQIYS--GGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1149)
Q Consensus 423 ~~L~~~V~D~D~~-~ddfIG~v~Ipl~~L~~--G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f~p 484 (1149)
..|.|.|+|++.. .+++||++.|+|+++.. +...+.|++|. +.|+|+|++++..
T Consensus 74 ~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 74 RNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred CEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 7899999998874 57899999999999997 56678999994 2358999998864
No 38
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.71 E-value=7.8e-17 Score=157.64 Aligned_cols=120 Identities=23% Similarity=0.378 Sum_probs=98.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCC-CceE
Q 001126 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEV 425 (1149)
Q Consensus 347 GtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~-~~~L 425 (1149)
|.|+|+|++|++|+..|..... .....+||||+|.+++.. +||++++++.||+|||+|.|.+... ...|
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~---------~~~g~~dPyv~v~~~~~~-~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l 70 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGG---------LVKGKSDPYVIVRVGAQT-FKSKVIKENLNPKWNEVYEAVVDEVPGQEL 70 (121)
T ss_pred CeEEEEEEEccCCccccccccc---------CCCCCcCCEEEEEECCEe-EEccccCCCCCCcccceEEEEeCCCCCCEE
Confidence 6899999999999988753100 000128999999999855 6999999999999999999998754 5789
Q ss_pred EEEEEEccCCCCcceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEEEEEe
Q 001126 426 HFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1149)
Q Consensus 426 ~~~V~D~D~~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f 482 (1149)
.|+|+|++..++++||++.+++.++..+...+.||+|.+. ..|+|+|+++|
T Consensus 71 ~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~~ 121 (121)
T cd08391 71 EIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLEW 121 (121)
T ss_pred EEEEEecCCCCCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEeC
Confidence 9999999988889999999999999987778899999642 23588888875
No 39
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.71 E-value=6.9e-17 Score=158.68 Aligned_cols=121 Identities=28% Similarity=0.450 Sum_probs=100.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC-EEEeeeeeecCCCCCeeceEEEEEccCCCceE
Q 001126 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-AVVGRTFVISNSEDPVWQQHFYVPVAHSAAEV 425 (1149)
Q Consensus 347 GtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g-~~~~rTkVi~nt~nPvWNE~F~f~v~~~~~~L 425 (1149)
|+|+|+|++|++|+..+..++ .+||||+|.+.+ ...+||+++.++.||+|||+|.|.+......|
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~--------------~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l 67 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGG--------------TVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPL 67 (124)
T ss_pred eEEEEEEEcccCCCcccccCC--------------CCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEE
Confidence 789999999999996654322 179999999998 56679999999999999999999998667899
Q ss_pred EEEEEEccCC-CCcceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEEEEEeec
Q 001126 426 HFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1149)
Q Consensus 426 ~~~V~D~D~~-~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f~p 484 (1149)
.|+|||++.. ++++||++.+++.++..+...+.|...+..+|++ .|+|+++|+|.|
T Consensus 68 ~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~---~G~i~~~l~~~p 124 (124)
T cd04044 68 NLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKP---VGELNYDLRFFP 124 (124)
T ss_pred EEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhhhcCCcc---ceEEEEEEEeCC
Confidence 9999999885 6889999999999999776665443333566664 369999999986
No 40
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.71 E-value=8e-17 Score=157.99 Aligned_cols=113 Identities=27% Similarity=0.400 Sum_probs=96.8
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC--EEEeeeeeecCCCCCeeceEEEEEccCC-CceE
Q 001126 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEV 425 (1149)
Q Consensus 349 L~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g--~~~~rTkVi~nt~nPvWNE~F~f~v~~~-~~~L 425 (1149)
|.|+|++|++|+..|..+. +||||+|.+.+ ...+||++++++.||+|||+|.|.+... ...|
T Consensus 2 L~V~vi~a~~L~~~~~~~~---------------~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l 66 (119)
T cd04036 2 LTVRVLRATNITKGDLLST---------------PDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVL 66 (119)
T ss_pred eEEEEEEeeCCCccCCCCC---------------CCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEE
Confidence 7999999999998887665 89999999964 3446999999999999999999998765 3579
Q ss_pred EEEEEEccCCCCcceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEEEEEe
Q 001126 426 HFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1149)
Q Consensus 426 ~~~V~D~D~~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f 482 (1149)
.|+|||+|..++++||++.++++++..|...+.|++|.. ++ .|+|+|++.+
T Consensus 67 ~v~v~d~d~~~~~~iG~~~~~l~~l~~g~~~~~~~~L~~-~~-----~g~l~~~~~~ 117 (119)
T cd04036 67 ELTVMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSLNP-QG-----KEELEVEFLL 117 (119)
T ss_pred EEEEEECCCCCCcccEEEEEEHHHCCCCCcEEEEEECCC-CC-----CceEEEEEEe
Confidence 999999998889999999999999999988999999953 22 2577777764
No 41
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.70 E-value=1.3e-16 Score=157.86 Aligned_cols=120 Identities=23% Similarity=0.424 Sum_probs=100.3
Q ss_pred eEEEEEEEEeeCCCCCCC--CCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCC-Cc
Q 001126 347 GNLDIWIYSAKNLPNMDM--FHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AA 423 (1149)
Q Consensus 347 GtL~VtVieAk~L~~~D~--~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~-~~ 423 (1149)
|+|+|+|++|++|+..|. .+. +||||+|.+++.. .||++++++.||+|||+|.|++... ..
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~---------------~dPyv~v~~~~~~-~kT~~~~~t~~P~Wne~f~~~~~~~~~~ 64 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGK---------------SDPYAILSVGAQR-FKTQTIPNTLNPKWNYWCEFPIFSAQNQ 64 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCC---------------cCCeEEEEECCEE-EecceecCCcCCccCCcEEEEecCCCCC
Confidence 789999999999998887 555 8999999998776 4999999999999999999999873 58
Q ss_pred eEEEEEEEccCC-CCcceeeEEEeceeecc---CCceeeeEeeccCC-CCCCCCCceeEEEEEe
Q 001126 424 EVHFFVKDSDVV-GSELIGTVAIPVEQIYS---GGKVEGTYPVLNGS-GKPCKPGATLTLSIQY 482 (1149)
Q Consensus 424 ~L~~~V~D~D~~-~ddfIG~v~Ipl~~L~~---G~~~~~W~pL~~~~-Gk~~~~~g~L~L~L~f 482 (1149)
.|.|+|||++.. ++++||++.|++.++.. ....+.||+|.+.. ++.....|+|+|++.+
T Consensus 65 ~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 65 LLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred EEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 899999999985 68999999999999873 34467999997653 2223356799988864
No 42
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.70 E-value=1.8e-16 Score=156.31 Aligned_cols=117 Identities=26% Similarity=0.433 Sum_probs=99.5
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCCCceEEEE
Q 001126 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFF 428 (1149)
Q Consensus 349 L~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~~~~L~~~ 428 (1149)
|.|+|++|++|+.+|..|. +||||+|.+++..++||+++.++.||+|||+|.|.+.+....|.|+
T Consensus 2 l~v~vi~a~~L~~~d~~g~---------------~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~ 66 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGS---------------SDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFY 66 (121)
T ss_pred EEEEEEEeeCCcCCCCCCC---------------CCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEE
Confidence 8999999999999998776 8999999999887789999999999999999999998777899999
Q ss_pred EEEccCC-CCcceeeEEEeceeeccC-CceeeeEeeccCCCCCCCCCceeEEEEE
Q 001126 429 VKDSDVV-GSELIGTVAIPVEQIYSG-GKVEGTYPVLNGSGKPCKPGATLTLSIQ 481 (1149)
Q Consensus 429 V~D~D~~-~ddfIG~v~Ipl~~L~~G-~~~~~W~pL~~~~Gk~~~~~g~L~L~L~ 481 (1149)
|||++.. .+++||++.++++++..+ ...+.|++|...++. .+..|+|+|.++
T Consensus 67 v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~-~~~~G~i~l~~~ 120 (121)
T cd04054 67 VLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPD-EEVQGEIHLELS 120 (121)
T ss_pred EEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCC-CccccEEEEEEE
Confidence 9999985 589999999999988754 347899999653322 123468888765
No 43
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.69 E-value=4.7e-17 Score=165.32 Aligned_cols=98 Identities=24% Similarity=0.472 Sum_probs=90.7
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCCC
Q 001126 343 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA 422 (1149)
Q Consensus 343 ~LlhGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~~ 422 (1149)
.++.|.|+|+|++|.||...|+.++ +||||.+.+++++. ||+++.+++||+|||+|.|.+.++.
T Consensus 2 ~~~vGLL~v~v~~g~~L~~rD~~~s---------------SDPyVVl~lg~q~l-kT~~v~~n~NPeWNe~ltf~v~d~~ 65 (168)
T KOG1030|consen 2 EMLVGLLRVRVKRGKNLAIRDFLGS---------------SDPYVVLELGNQKL-KTRVVYKNLNPEWNEELTFTVKDPN 65 (168)
T ss_pred CccceEEEEEEEeecCeeeeccccC---------------CCCeEEEEECCeee-eeeeecCCCCCcccceEEEEecCCC
Confidence 3578999999999999999998766 99999999999997 9999999999999999999999999
Q ss_pred ceEEEEEEEccC-CCCcceeeEEEeceeeccCCce
Q 001126 423 AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKV 456 (1149)
Q Consensus 423 ~~L~~~V~D~D~-~~ddfIG~v~Ipl~~L~~G~~~ 456 (1149)
..|.++|||+|. +.|||||.+.|++..+..+...
T Consensus 66 ~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~~~ 100 (168)
T KOG1030|consen 66 TPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQKM 100 (168)
T ss_pred ceEEEEEEeCCCCCcccccceeeeccHHHHHHhhh
Confidence 999999999999 6699999999999999976544
No 44
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.69 E-value=2.5e-16 Score=153.43 Aligned_cols=112 Identities=25% Similarity=0.340 Sum_probs=98.9
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCC-CceEEE
Q 001126 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHF 427 (1149)
Q Consensus 349 L~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~-~~~L~~ 427 (1149)
|+|+|++|++|+..|..+. +||||+|.+.+.+ .||+++.++.||+|||+|.|.+... ...|.|
T Consensus 2 ~~V~v~~a~~L~~~~~~~~---------------~dPyv~v~~~~~~-~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v 65 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGL---------------SDPYVKFRLGNEK-YKSKVCSKTLNPQWLEQFDLHLFDDQSQILEI 65 (116)
T ss_pred EEEEEEEEECCCCCCCCCC---------------CCcEEEEEECCEe-EecccccCCCCCceeEEEEEEecCCCCCEEEE
Confidence 7999999999999887765 8999999998876 4999999999999999999998776 588999
Q ss_pred EEEEccCC-CCcceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEEEEEee
Q 001126 428 FVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1149)
Q Consensus 428 ~V~D~D~~-~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f~ 483 (1149)
+|||++.. .+++||++.++++++..+...+.|++|.+. .|+|++.+.|+
T Consensus 66 ~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~-------~G~~~~~~~~~ 115 (116)
T cd08376 66 EVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDG-------EGSLLLLLTLT 115 (116)
T ss_pred EEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEccCC-------CcEEEEEEEec
Confidence 99999985 689999999999999988888999999532 25888888774
No 45
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.69 E-value=1.8e-16 Score=158.21 Aligned_cols=120 Identities=23% Similarity=0.406 Sum_probs=100.1
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE------EEeeeeeecCCCCCeeceEEEEEccCC
Q 001126 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA------VVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1149)
Q Consensus 348 tL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~------~~~rTkVi~nt~nPvWNE~F~f~v~~~ 421 (1149)
+|+|+|++|++|+.+|..+. +||||+|.+.+. ...||++++++.||+|||+|.|.+...
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~---------------~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~ 65 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGA---------------SDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR 65 (133)
T ss_pred CEEEEEEEeECCCcccCCCC---------------cCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC
Confidence 38999999999998887776 899999999764 235999999999999999999998766
Q ss_pred CceEEEEEEEccCC-CCcceeeEEEeceeeccCCc------eeeeEeeccCCCCCCCCCceeEEEEEee
Q 001126 422 AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGK------VEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1149)
Q Consensus 422 ~~~L~~~V~D~D~~-~ddfIG~v~Ipl~~L~~G~~------~~~W~pL~~~~Gk~~~~~g~L~L~L~f~ 483 (1149)
...|.|+|||++.. .+++||++.+++.++..+.. ...||+|....++ .+..|+|+|+|.|.
T Consensus 66 ~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~-~~~~G~l~~~~~~~ 133 (133)
T cd04033 66 EHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSK-SRVKGHLRLYMAYL 133 (133)
T ss_pred CCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCC-CcceeEEEEEEeeC
Confidence 67899999999985 58899999999999986532 4589999754322 23468999999983
No 46
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.69 E-value=2.7e-16 Score=155.06 Aligned_cols=118 Identities=22% Similarity=0.364 Sum_probs=98.6
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCC-CceEE
Q 001126 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVH 426 (1149)
Q Consensus 348 tL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~-~~~L~ 426 (1149)
.|+|+|++|++|+.+|..+. +||||+|.+++... +|+++.++.||+|||+|.|.+... ...|.
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~---------------~DPyv~v~~~~~~~-kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~ 64 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGT---------------SDPFVRVFYNGQTL-ETSVVKKSCYPRWNEVFEFELMEGADSPLS 64 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCC---------------cCceEEEEECCEEE-eceeecCCCCCccCcEEEEEcCCCCCCEEE
Confidence 38999999999998887665 89999999988764 999999999999999999999876 47899
Q ss_pred EEEEEccCC-CCcceeeEEEeceeeccCCceeeeEeeccCCCC---CCCCCceeEEEEE
Q 001126 427 FFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGK---PCKPGATLTLSIQ 481 (1149)
Q Consensus 427 ~~V~D~D~~-~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk---~~~~~g~L~L~L~ 481 (1149)
|+|||++.. .+++||++.+++.++..+...+.||.|.....+ ..+..|.|+|.|+
T Consensus 65 ~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 65 VEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred EEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 999999985 478999999999999877777899999753222 2234567877663
No 47
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.69 E-value=1.6e-16 Score=156.76 Aligned_cols=100 Identities=19% Similarity=0.272 Sum_probs=85.7
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC------EEEeeeeeecCCCCCeeceEEEEEccCC
Q 001126 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG------AVVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1149)
Q Consensus 348 tL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g------~~~~rTkVi~nt~nPvWNE~F~f~v~~~ 421 (1149)
.|+|+|++|++|+..+. |. +||||+|++.+ .+..||+++++++||+|||+|.|.+...
T Consensus 1 kL~V~Vi~A~~L~~~d~-g~---------------~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~ 64 (120)
T cd08395 1 KVTVKVVAANDLKWQTT-GM---------------FRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNE 64 (120)
T ss_pred CEEEEEEECcCCCcccC-CC---------------CCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCc
Confidence 38999999999998774 54 89999999842 2335899999999999999999998643
Q ss_pred ----CceEEEEEEEccCCC-CcceeeEEEeceeeccCCceeeeEeec
Q 001126 422 ----AAEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1149)
Q Consensus 422 ----~~~L~~~V~D~D~~~-ddfIG~v~Ipl~~L~~G~~~~~W~pL~ 463 (1149)
...|+|.|+|+|..+ +++||++.||+.++..+...+.|++|.
T Consensus 65 ~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~ 111 (120)
T cd08395 65 DDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPLG 111 (120)
T ss_pred CCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEECc
Confidence 257999999999854 889999999999999888889999994
No 48
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=4.5e-16 Score=154.40 Aligned_cols=117 Identities=33% Similarity=0.592 Sum_probs=102.1
Q ss_pred EEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCC---CceEEEEE
Q 001126 353 IYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFV 429 (1149)
Q Consensus 353 VieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~---~~~L~~~V 429 (1149)
|++|++|++ ..+. +||||+|.+.+.+. ||++++++.||+|||+|.|.+.+. ...|.|+|
T Consensus 2 vi~a~~L~~--~~g~---------------~Dpyv~v~~~~~~~-kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v 63 (127)
T cd08373 2 VVSLKNLPG--LKGK---------------GDRIAKVTFRGVKK-KTRVLENELNPVWNETFEWPLAGSPDPDESLEIVV 63 (127)
T ss_pred eEEeeCCcc--cCCC---------------CCCEEEEEECCEee-ecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEE
Confidence 789999987 4554 89999999988764 999999999999999999999764 47899999
Q ss_pred EEccCC-CCcceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEEEEEeecccccc
Q 001126 430 KDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLS 489 (1149)
Q Consensus 430 ~D~D~~-~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f~p~~~~~ 489 (1149)
||++.. ++++||++.+++.++..+.....|++|.+.++++. .|+|+++++|.|...+-
T Consensus 64 ~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~--~~~l~l~~~~~~~~~~~ 122 (127)
T cd08373 64 KDYEKVGRNRLIGSATVSLQDLVSEGLLEVTEPLLDSNGRPT--GATISLEVSYQPPDGAV 122 (127)
T ss_pred EECCCCCCCceEEEEEEEhhHcccCCceEEEEeCcCCCCCcc--cEEEEEEEEEeCCCCcc
Confidence 999985 57899999999999998888899999988777653 47999999999987653
No 49
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.67 E-value=2.3e-16 Score=155.94 Aligned_cols=101 Identities=25% Similarity=0.407 Sum_probs=87.7
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCeeceEEEEEc-cC
Q 001126 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPV-AH 420 (1149)
Q Consensus 346 hGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~rTkVi~nt~nPvWNE~F~f~v-~~ 420 (1149)
.|+|.|+|++|++|+.+| .+. +||||+|.+.. ...+||++++++.||+|||+|.|.+ ..
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~---------------~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~ 75 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSD---------------PDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPV 75 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCC---------------CCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCCh
Confidence 688999999999999988 665 89999999963 2345999999999999999999987 32
Q ss_pred ---CCceEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeEee
Q 001126 421 ---SAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1149)
Q Consensus 421 ---~~~~L~~~V~D~D~~-~ddfIG~v~Ipl~~L~~G~~~~~W~pL 462 (1149)
....|+|+|||+|.. ++++||++.|+++++..+...+.||+|
T Consensus 76 ~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 76 EDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred HHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 247899999999984 588999999999999988778899987
No 50
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.67 E-value=3.8e-16 Score=150.01 Aligned_cols=97 Identities=25% Similarity=0.501 Sum_probs=86.8
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCC-CceEEE
Q 001126 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHF 427 (1149)
Q Consensus 349 L~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~-~~~L~~ 427 (1149)
|.|+|++|++|+..+..+. +||||+|.++++. .||++++++.||+|||+|.|.+.++ ...|.|
T Consensus 2 L~V~v~~A~~L~~~~~~~~---------------~dpyv~v~~~~~~-~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v 65 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKE---------------PSPYVELTVGKTT-QKSKVKERTNNPVWEEGFTFLVRNPENQELEI 65 (105)
T ss_pred EEEEEeeecCCCCcccCCC---------------CCcEEEEEECCEE-EeCccccCCCCCcccceEEEEeCCCCCCEEEE
Confidence 8999999999998876665 8999999999965 5999999999999999999999875 478999
Q ss_pred EEEEccCCCCcceeeEEEeceeeccC--CceeeeEeec
Q 001126 428 FVKDSDVVGSELIGTVAIPVEQIYSG--GKVEGTYPVL 463 (1149)
Q Consensus 428 ~V~D~D~~~ddfIG~v~Ipl~~L~~G--~~~~~W~pL~ 463 (1149)
+|+|++. +++||++.|+|.+|..+ ...+.||+|.
T Consensus 66 ~v~d~~~--~~~iG~~~i~l~~l~~~~~~~~~~w~~L~ 101 (105)
T cd04050 66 EVKDDKT--GKSLGSLTLPLSELLKEPDLTLDQPFPLD 101 (105)
T ss_pred EEEECCC--CCccEEEEEEHHHhhccccceeeeeEecC
Confidence 9999887 88999999999999865 3578999996
No 51
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.66 E-value=1.1e-15 Score=151.66 Aligned_cols=121 Identities=18% Similarity=0.257 Sum_probs=101.2
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCCCceE
Q 001126 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEV 425 (1149)
Q Consensus 346 hGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~~~~L 425 (1149)
++.|+|+|++|++|...|..|. +||||+|.+++... ||++++++.||+|||+|.|.+......|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~---------------~dPyv~v~~~~~~~-kT~v~~~t~nP~Wne~f~f~~~~~~~~l 65 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGG---------------ADPYVIIKCEGESV-RSPVQKDTLSPEFDTQAIFYRKKPRSPI 65 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCC---------------cCccEEEEECCEEE-EeCccCCCCCCcccceEEEEecCCCCEE
Confidence 4679999999999998887776 89999999999875 9999999999999999999988777899
Q ss_pred EEEEEEccCCCCcceeeEEEeceeeccCCceeeeEeeccCCC-CCCCCCceeEEEEEeec
Q 001126 426 HFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSG-KPCKPGATLTLSIQYTP 484 (1149)
Q Consensus 426 ~~~V~D~D~~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~G-k~~~~~g~L~L~L~f~p 484 (1149)
.|+|||++..+|++||.+.+++.++.. ....|++|..... ...+..|.|.|++.+.+
T Consensus 66 ~i~V~d~~~~~d~~lG~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 66 KIQVWNSNLLCDEFLGQATLSADPNDS--QTLRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred EEEEEECCCCCCCceEEEEEecccCCC--cCceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 999999999889999999999988653 3457788853221 11234579999998765
No 52
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.66 E-value=1.1e-15 Score=153.98 Aligned_cols=114 Identities=21% Similarity=0.359 Sum_probs=95.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCCC-ceE
Q 001126 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA-AEV 425 (1149)
Q Consensus 347 GtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~~-~~L 425 (1149)
|.|.|+|++|++|+.+|..|. +||||+|.+++.. .||++++++.||.|||+|.|.+.+.. ..|
T Consensus 15 G~L~V~Vi~A~~L~~~d~~g~---------------~DPYv~v~~~~~~-~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l 78 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSNGK---------------SDPYCEVSMGSQE-HKTKVVSDTLNPKWNSSMQFFVKDLEQDVL 78 (136)
T ss_pred EEEEEEEEEeeCCCCCCCCCC---------------cCcEEEEEECCEe-eeccccCCCCCCccCceEEEEecCccCCEE
Confidence 789999999999999887776 8999999998876 49999999999999999999997654 789
Q ss_pred EEEEEEccCC-CCcceeeEEEeceeecc-----CCceeeeEeeccCCCCCCCCCceeEEEEEe
Q 001126 426 HFFVKDSDVV-GSELIGTVAIPVEQIYS-----GGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1149)
Q Consensus 426 ~~~V~D~D~~-~ddfIG~v~Ipl~~L~~-----G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f 482 (1149)
.|+|||+|.. .|++||++.|++.++.. ......|+.|. ++ ..|+|+|+|.|
T Consensus 79 ~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~---~~---~~g~i~l~~~~ 135 (136)
T cd08375 79 CITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLH---EV---PTGEVVVKLDL 135 (136)
T ss_pred EEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEeccc---cc---cceeEEEEEEe
Confidence 9999999985 58899999999999985 22334566652 32 23699999887
No 53
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.65 E-value=3.3e-16 Score=154.29 Aligned_cols=102 Identities=20% Similarity=0.326 Sum_probs=87.8
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCeeceEEEEEccC
Q 001126 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1149)
Q Consensus 345 lhGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~rTkVi~nt~nPvWNE~F~f~v~~ 420 (1149)
-+|.|.|+|++|+||+.++ .+. +||||+|.+.. ...+||++++++.||+|||+|.|.+.+
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~---------------~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~ 73 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGT---------------CNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNE 73 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCC---------------CCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcCh
Confidence 4678999999999999888 554 89999999953 234599999999999999999999865
Q ss_pred C--CceEEEEEEEccCC--CCcceeeEEEeceeeccCCceeeeEee
Q 001126 421 S--AAEVHFFVKDSDVV--GSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1149)
Q Consensus 421 ~--~~~L~~~V~D~D~~--~ddfIG~v~Ipl~~L~~G~~~~~W~pL 462 (1149)
. ...|.|+|||++.. ++++||.+.|++.++..+...+.||.|
T Consensus 74 ~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 74 RDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred HHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 4 25688999999874 378999999999999888878999986
No 54
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.65 E-value=6.4e-16 Score=149.81 Aligned_cols=100 Identities=25% Similarity=0.477 Sum_probs=87.5
Q ss_pred EEEEEEEeeCCCCCCC-CCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCee-ceEEEEEccCC---Cc
Q 001126 349 LDIWIYSAKNLPNMDM-FHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVW-QQHFYVPVAHS---AA 423 (1149)
Q Consensus 349 L~VtVieAk~L~~~D~-~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvW-NE~F~f~v~~~---~~ 423 (1149)
|+|+|++|++|+.++. .+. +||||+|.+++.+ +||++++++.||+| ||+|.|.+.+. ..
T Consensus 1 l~V~v~~a~~L~~~d~~~~~---------------~Dpyv~v~~~~~~-~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~ 64 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDL---------------TDAFVEVKFGSTT-YKTDVVKKSLNPVWNSEWFRFEVDDEELQDE 64 (110)
T ss_pred CEEEEEEEECCCccccCCCC---------------CCceEEEEECCee-EecceecCCCCCcccCcEEEEEcChHHcCCC
Confidence 6899999999998874 444 8999999998855 59999999999999 99999998764 36
Q ss_pred eEEEEEEEccCC-CCcceeeEEEeceeecc---CCceeeeEeecc
Q 001126 424 EVHFFVKDSDVV-GSELIGTVAIPVEQIYS---GGKVEGTYPVLN 464 (1149)
Q Consensus 424 ~L~~~V~D~D~~-~ddfIG~v~Ipl~~L~~---G~~~~~W~pL~~ 464 (1149)
.|.|+|||+|.. ++++||++.+++.++.. +...++||+|++
T Consensus 65 ~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 65 PLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred eEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 899999999985 57899999999999986 456889999975
No 55
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.64 E-value=8.9e-16 Score=151.58 Aligned_cols=103 Identities=19% Similarity=0.331 Sum_probs=90.7
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEEeeeeeecCCCCCeeceEEEEEccCC--
Q 001126 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVGRTFVISNSEDPVWQQHFYVPVAHS-- 421 (1149)
Q Consensus 346 hGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l--~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~-- 421 (1149)
.|.|.|+|++|++|+.+|..+. +||||+|.+ ++...+||++++++.||+|||+|.|.+...
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~---------------~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l 79 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGT---------------ADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQEL 79 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCC---------------CCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHh
Confidence 4689999999999998887775 899999999 445567999999999999999999998754
Q ss_pred -CceEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeEeec
Q 001126 422 -AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1149)
Q Consensus 422 -~~~L~~~V~D~D~~-~ddfIG~v~Ipl~~L~~G~~~~~W~pL~ 463 (1149)
...|.|+|||+|.. ++++||++.|+++++..+...+.||+|.
T Consensus 80 ~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 80 PKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 36899999999985 5889999999999999777889999984
No 56
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.64 E-value=5.6e-16 Score=151.69 Aligned_cols=99 Identities=11% Similarity=0.174 Sum_probs=83.3
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC---EEEeeeeeecCCCCCeeceEEEEEccCC-
Q 001126 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG---AVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1149)
Q Consensus 346 hGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g---~~~~rTkVi~nt~nPvWNE~F~f~v~~~- 421 (1149)
.|.|+|+|++|++|+ . .|+ +||||+|++.. ....+|+|+++|+||+|||+|.|.+...
T Consensus 13 ~~~L~V~vikA~~L~-~--~g~---------------sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~ 74 (118)
T cd08677 13 KAELHVNILEAENIS-V--DAG---------------CECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEE 74 (118)
T ss_pred CCEEEEEEEEecCCC-C--CCC---------------CCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHH
Confidence 478999999999998 2 344 89999999953 2345999999999999999999998754
Q ss_pred --CceEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeEee
Q 001126 422 --AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1149)
Q Consensus 422 --~~~L~~~V~D~D~-~~ddfIG~v~Ipl~~L~~G~~~~~W~pL 462 (1149)
...|.|+|+|+|. .++++||++.+++.++..+...+.|.+|
T Consensus 75 l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 75 SLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred hCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 3679999999999 5699999999999998666666788654
No 57
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.64 E-value=1e-15 Score=156.35 Aligned_cols=103 Identities=20% Similarity=0.339 Sum_probs=85.5
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE----EEeeeeeecCCCCCeeceEEEEEcc-----
Q 001126 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA----VVGRTFVISNSEDPVWQQHFYVPVA----- 419 (1149)
Q Consensus 349 L~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~----~~~rTkVi~nt~nPvWNE~F~f~v~----- 419 (1149)
|.|+|++|++|+. ..|. +||||+|.+.+. ...||+|++++.||+|||+|.|.+.
T Consensus 2 L~V~Vi~ArnL~~--~~g~---------------sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~ 64 (148)
T cd04010 2 LSVRVIECSDLAL--KNGT---------------CDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSP 64 (148)
T ss_pred EEEEEEeCcCCCC--CCCC---------------CCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEeccccc
Confidence 8999999999986 3444 899999999762 2359999999999999999999984
Q ss_pred ----------CC-CceEEEEEEEccCC-CCcceeeEEEeceeeccC-CceeeeEeeccCCCC
Q 001126 420 ----------HS-AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSG-GKVEGTYPVLNGSGK 468 (1149)
Q Consensus 420 ----------~~-~~~L~~~V~D~D~~-~ddfIG~v~Ipl~~L~~G-~~~~~W~pL~~~~Gk 468 (1149)
+. ...|.|+|||++.. .|+|||++.|++.+|..+ ...+.||+|...+.+
T Consensus 65 ~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~ 126 (148)
T cd04010 65 EKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEK 126 (148)
T ss_pred ccccccCCcccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccc
Confidence 11 25689999999874 688999999999999976 567899999765444
No 58
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.64 E-value=1.7e-15 Score=149.88 Aligned_cols=116 Identities=20% Similarity=0.308 Sum_probs=93.7
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCCCceEEEE
Q 001126 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFF 428 (1149)
Q Consensus 349 L~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~~~~L~~~ 428 (1149)
|+|+|++|++|+.++..+. +||||+|.+++...+||++++++.||+|||+|.|.+.. ...|.|+
T Consensus 2 l~v~v~~A~~L~~~~~~~~---------------~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~ 65 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRL---------------PDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQ 65 (123)
T ss_pred eEEEEEEecCCCccCCCCC---------------CCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEE
Confidence 8999999999998887775 89999999986666799999999999999999999975 6789999
Q ss_pred EEEccCCC---CcceeeEEEeceeeccCC-ceeeeEeeccCCCCC-CCCCceeEEEE
Q 001126 429 VKDSDVVG---SELIGTVAIPVEQIYSGG-KVEGTYPVLNGSGKP-CKPGATLTLSI 480 (1149)
Q Consensus 429 V~D~D~~~---ddfIG~v~Ipl~~L~~G~-~~~~W~pL~~~~Gk~-~~~~g~L~L~L 480 (1149)
|||++..+ +++||++.+++.++.... ....|++|....... ....|+|.+++
T Consensus 66 V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 66 VFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 99998854 579999999999987443 336799996544321 11245666654
No 59
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.64 E-value=2e-15 Score=149.34 Aligned_cols=97 Identities=22% Similarity=0.291 Sum_probs=85.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCCCceEE
Q 001126 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVH 426 (1149)
Q Consensus 347 GtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~~~~L~ 426 (1149)
|.|.|+|++|++|+.++ . .||||+|.+++.+. +|+++++ .||+|||+|.|.+......|.
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~---------------~dPYV~Ik~g~~k~-kT~v~~~-~nP~WnE~F~F~~~~~~~~L~ 61 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---K---------------FNTYVTLKVQNVKS-TTIAVRG-SQPCWEQDFMFEINRLDLGLV 61 (127)
T ss_pred ceEEEEEEEeeCCCCCC---C---------------CCCeEEEEECCEEe-EeeECCC-CCCceeeEEEEEEcCCCCEEE
Confidence 57999999999997543 2 68999999998774 9999987 599999999999988777799
Q ss_pred EEEEEccCCCCcceeeEEEeceeeccCCce--eeeEeec
Q 001126 427 FFVKDSDVVGSELIGTVAIPVEQIYSGGKV--EGTYPVL 463 (1149)
Q Consensus 427 ~~V~D~D~~~ddfIG~v~Ipl~~L~~G~~~--~~W~pL~ 463 (1149)
|+|||+|...|||||++.|+|+++..+... ..||+|.
T Consensus 62 v~V~dkd~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~ 100 (127)
T cd08394 62 IELWNKGLIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLD 100 (127)
T ss_pred EEEEeCCCcCCCceEEEEEEhHHcccCCCCCCCccEecC
Confidence 999999999999999999999999966444 7899995
No 60
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.63 E-value=1.7e-15 Score=149.44 Aligned_cols=104 Identities=35% Similarity=0.593 Sum_probs=93.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCCCceEE
Q 001126 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVH 426 (1149)
Q Consensus 347 GtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~~~~L~ 426 (1149)
|.|+|+|++|++|+..+..+. +||||+|.+++...++|+++.++.||+|||+|.|++.+....|.
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~---------------~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~ 65 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGK---------------IDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKIT 65 (120)
T ss_pred CeEEEEEEeeECCCCccCCCC---------------cCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEE
Confidence 689999999999998887765 89999999988777899999999999999999999988778999
Q ss_pred EEEEEccCC-CCcceeeEEEeceeeccCCceeeeEeeccCC
Q 001126 427 FFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGS 466 (1149)
Q Consensus 427 ~~V~D~D~~-~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~ 466 (1149)
|+|+|++.. .+++||++.+++.++..+ ..+.||.|++.+
T Consensus 66 v~v~d~~~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 66 LEVMDYEKVGKDRSLGSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred EEEEECCCCCCCCeeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence 999999985 477999999999999976 568999998765
No 61
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.63 E-value=1.3e-15 Score=155.16 Aligned_cols=106 Identities=19% Similarity=0.276 Sum_probs=89.4
Q ss_pred eceEEEEEEEEeeCCCCCC-CCCccccccccccCCCCCCCCcEEEEEEC--CE--EEeeeeeecCCCCCeeceEEEEEcc
Q 001126 345 LHGNLDIWIYSAKNLPNMD-MFHKTLGGMFNSQMNTKITSDPYVTIAVA--GA--VVGRTFVISNSEDPVWQQHFYVPVA 419 (1149)
Q Consensus 345 lhGtL~VtVieAk~L~~~D-~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--g~--~~~rTkVi~nt~nPvWNE~F~f~v~ 419 (1149)
-.|.|.|+|++|+||+..+ ..|. +||||+|++. +. ..+||+++++++||+|||+|.|.+.
T Consensus 27 ~~~~L~V~Vi~ArnL~~~~~~~g~---------------sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~ 91 (146)
T cd04028 27 KKGQLEVEVIRARGLVQKPGSKVL---------------PAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS 91 (146)
T ss_pred CCCEEEEEEEEeeCCCcccCCCCC---------------cCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc
Confidence 4689999999999998764 4444 8999999994 32 2459999999999999999999998
Q ss_pred CCCceEEEEEE-EccC-CCCcceeeEEEeceeeccCCceeeeEeeccC
Q 001126 420 HSAAEVHFFVK-DSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNG 465 (1149)
Q Consensus 420 ~~~~~L~~~V~-D~D~-~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~ 465 (1149)
.....|.|+|| |++. .+++|||++.|+|+++..+.....||+|...
T Consensus 92 l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 92 PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 55678999999 5665 4588999999999999877778899999754
No 62
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.63 E-value=1.3e-15 Score=150.62 Aligned_cols=113 Identities=26% Similarity=0.429 Sum_probs=96.1
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeec-CCCCCeeceEEEEEccCC-----
Q 001126 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVIS-NSEDPVWQQHFYVPVAHS----- 421 (1149)
Q Consensus 348 tL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~-nt~nPvWNE~F~f~v~~~----- 421 (1149)
+|+|+|++|++|+..+..+. +||||+|.+++....+|+++. ++.||+|||+|.|.+...
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~---------------~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~ 65 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGK---------------MKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQG 65 (125)
T ss_pred CEEEEEEEcccCCCCCcccC---------------CceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccC
Confidence 58999999999998887665 899999999884445999986 489999999999999877
Q ss_pred CceEEEEEEEccC-CCCcceeeEEEeceeeccCCc-----eeeeEeeccCCCCCCCCCceeEE
Q 001126 422 AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGK-----VEGTYPVLNGSGKPCKPGATLTL 478 (1149)
Q Consensus 422 ~~~L~~~V~D~D~-~~ddfIG~v~Ipl~~L~~G~~-----~~~W~pL~~~~Gk~~~~~g~L~L 478 (1149)
...|.|+|+|++. .++++||++.|++.++..+.. ...||+|..++|++. |.|+|
T Consensus 66 ~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~---G~~~~ 125 (125)
T cd04051 66 RLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQ---GVLNF 125 (125)
T ss_pred ccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcC---eEEeC
Confidence 5789999999987 668899999999999997654 368999998888754 47764
No 63
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.62 E-value=2.1e-15 Score=149.74 Aligned_cols=102 Identities=22% Similarity=0.363 Sum_probs=87.3
Q ss_pred ceEEEEEEEEeeCCCCCCCC-CccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCeeceEEEEEccC
Q 001126 346 HGNLDIWIYSAKNLPNMDMF-HKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1149)
Q Consensus 346 hGtL~VtVieAk~L~~~D~~-g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~rTkVi~nt~nPvWNE~F~f~v~~ 420 (1149)
.|+|.|+|++|+||+..|.. +. +||||+|.+.. ...+||++++++.||+|||+|.|.+..
T Consensus 14 ~~~L~V~Vi~a~~L~~~~~~~~~---------------~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~ 78 (125)
T cd04029 14 TQSLNVHVKECRNLAYGDEAKKR---------------SNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISH 78 (125)
T ss_pred CCeEEEEEEEecCCCccCCCCCC---------------CCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCH
Confidence 46899999999999987653 43 89999999942 223599999999999999999999865
Q ss_pred C---CceEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeEee
Q 001126 421 S---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1149)
Q Consensus 421 ~---~~~L~~~V~D~D~-~~ddfIG~v~Ipl~~L~~G~~~~~W~pL 462 (1149)
. ...|.|+|||+|. .++++||++.|++.++......+.||+|
T Consensus 79 ~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 79 SQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred HHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 3 3579999999998 4588999999999999888888999998
No 64
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.62 E-value=2.2e-15 Score=148.73 Aligned_cols=103 Identities=30% Similarity=0.354 Sum_probs=90.0
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC--EEEeeeeeecCCCCCeeceEEEEEccCC--
Q 001126 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVAHS-- 421 (1149)
Q Consensus 346 hGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g--~~~~rTkVi~nt~nPvWNE~F~f~v~~~-- 421 (1149)
.|+|.|+|++|++|+.+|..+. +||||+|.+.. ....||++++++.||+|||+|.|.+...
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~~~---------------~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l 79 (124)
T cd08385 15 SNQLTVGIIQAADLPAMDMGGT---------------SDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSEL 79 (124)
T ss_pred CCEEEEEEEEeeCCCCccCCCC---------------CCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHh
Confidence 4789999999999998887765 89999999853 3456999999999999999999998653
Q ss_pred -CceEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeEeec
Q 001126 422 -AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1149)
Q Consensus 422 -~~~L~~~V~D~D~~-~ddfIG~v~Ipl~~L~~G~~~~~W~pL~ 463 (1149)
...|.|+|||+|.. .+++||++.|+++++..|...+.|++|.
T Consensus 80 ~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 80 GNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 36899999999985 5789999999999998888889999984
No 65
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.62 E-value=3.6e-15 Score=148.26 Aligned_cols=114 Identities=25% Similarity=0.397 Sum_probs=95.2
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCCCceEEE
Q 001126 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 427 (1149)
Q Consensus 348 tL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~~~~L~~ 427 (1149)
.|+|+|++|++|+..|..+. +||||+|.+++.. +||+++.++.||+|||+|.|.+......|.|
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~---------------~DPyv~v~~~~~~-~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i 65 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGT---------------SDPYVTVQVGKTK-KRTKTIPQNLNPVWNEKFHFECHNSSDRIKV 65 (127)
T ss_pred eEEEEEEECcCCcCCCCCCC---------------cCcEEEEEECCEe-eecceecCCCCCccceEEEEEecCCCCEEEE
Confidence 58999999999999888775 8999999998765 5999999999999999999999766778999
Q ss_pred EEEEccC------------CCCcceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEEEE
Q 001126 428 FVKDSDV------------VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSI 480 (1149)
Q Consensus 428 ~V~D~D~------------~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L~L 480 (1149)
+|||+|. ..+++||++.+++.++.. ..+.||.|...+++. ...|+|.|+|
T Consensus 66 ~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~~~~-~~~G~i~~~~ 127 (127)
T cd04027 66 RVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRTDKS-AVSGAIRLHI 127 (127)
T ss_pred EEEECCCCcccccceeccccCCCcceEEEEEhHHccC--CCCeEEECccCCCCC-cEeEEEEEEC
Confidence 9999985 258899999999998753 357899997554432 3457887764
No 66
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.62 E-value=1.7e-15 Score=147.01 Aligned_cols=99 Identities=27% Similarity=0.391 Sum_probs=85.1
Q ss_pred eEEEEEEEEeeCCCCCCCC-CccccccccccCCCCCCCCcEEEEEECC--EEEeeeeeecCCCCCeeceEEEEEccCC--
Q 001126 347 GNLDIWIYSAKNLPNMDMF-HKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVAHS-- 421 (1149)
Q Consensus 347 GtL~VtVieAk~L~~~D~~-g~~~~~~~~k~~~~~~~sDPYV~V~l~g--~~~~rTkVi~nt~nPvWNE~F~f~v~~~-- 421 (1149)
|+|+|+|++|++|+.+|.. +. +||||+|.+.+ ...+||++++++.||+|||+|.|.+...
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~---------------~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~ 65 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGS---------------SDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEV 65 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCC---------------CCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhc
Confidence 7899999999999998876 65 89999999953 3456999999999999999999987653
Q ss_pred --CceEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeEeec
Q 001126 422 --AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1149)
Q Consensus 422 --~~~L~~~V~D~D~~-~ddfIG~v~Ipl~~L~~G~~~~~W~pL~ 463 (1149)
...|.|+|||+|.. .|++||++.+++.+|.. ..+|+++.
T Consensus 66 ~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~~---~~~~~~~~ 107 (111)
T cd04041 66 KAGERLSCRLWDSDRFTADDRLGRVEIDLKELIE---DRNWMGRR 107 (111)
T ss_pred cCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHhc---CCCCCccc
Confidence 46899999999985 58999999999999983 34788873
No 67
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.62 E-value=1.9e-15 Score=150.08 Aligned_cols=102 Identities=19% Similarity=0.267 Sum_probs=87.1
Q ss_pred eEEEEEEEEeeCCCCCCCC-CccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCeeceEEEEEccCC
Q 001126 347 GNLDIWIYSAKNLPNMDMF-HKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1149)
Q Consensus 347 GtL~VtVieAk~L~~~D~~-g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~rTkVi~nt~nPvWNE~F~f~v~~~ 421 (1149)
+.|.|+|++|+||+.+|.. |. +||||+|.+.. ...+||+|++++.||+|||+|.|.+...
T Consensus 15 ~~L~V~vi~a~~L~~~d~~~g~---------------~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~ 79 (125)
T cd08393 15 RELHVHVIQCQDLAAADPKKQR---------------SDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVERE 79 (125)
T ss_pred CEEEEEEEEeCCCCCcCCCCCC---------------CCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHH
Confidence 5799999999999998875 54 89999999942 2235999999999999999999998643
Q ss_pred ---CceEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeEeec
Q 001126 422 ---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1149)
Q Consensus 422 ---~~~L~~~V~D~D~-~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~ 463 (1149)
...|.|+|||+|. .++++||++.|+|.++..+.....||+|.
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 80 ELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 3689999999998 45889999999999998776778999983
No 68
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.61 E-value=3.3e-15 Score=153.00 Aligned_cols=114 Identities=27% Similarity=0.422 Sum_probs=87.6
Q ss_pred EEEEEEEEeeCCCCCCCCCc--cccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCC--Cc
Q 001126 348 NLDIWIYSAKNLPNMDMFHK--TLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS--AA 423 (1149)
Q Consensus 348 tL~VtVieAk~L~~~D~~g~--~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~--~~ 423 (1149)
+|.|+|++|++|+.+|..+. .+.+.+. .....+||||+|.+++++. ||++++++.||+|||+|.|++..+ ..
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~---~~~~~~DPYV~V~~~g~~~-kT~v~~~t~nPvWNE~f~f~v~~p~~~~ 76 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLG---EKKELVDPYVEVSFAGQKV-KTSVKKNSYNPEWNEQIVFPEMFPPLCE 76 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceecccc---CCCCCcCcEEEEEECCEee-ecceEcCCCCCCcceEEEEEeeCCCcCC
Confidence 38999999999999986541 0000110 1122489999999999886 999999999999999999997543 47
Q ss_pred eEEEEEEEccCC-CCcceeeEEEeceeeccCCc-------eeeeEeeccC
Q 001126 424 EVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGK-------VEGTYPVLNG 465 (1149)
Q Consensus 424 ~L~~~V~D~D~~-~ddfIG~v~Ipl~~L~~G~~-------~~~W~pL~~~ 465 (1149)
.|.|+|||+|.. +|++||++.|++.+|..... ...|+.|.+.
T Consensus 77 ~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~ 126 (151)
T cd04018 77 RIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS 126 (151)
T ss_pred EEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence 899999999985 79999999999999886432 2456666543
No 69
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.60 E-value=1.1e-14 Score=144.12 Aligned_cols=113 Identities=23% Similarity=0.257 Sum_probs=94.7
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC--EEEeeeeeecCCCCCeeceEEEEEccCC-Cce
Q 001126 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVAHS-AAE 424 (1149)
Q Consensus 348 tL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g--~~~~rTkVi~nt~nPvWNE~F~f~v~~~-~~~ 424 (1149)
.|+|+|++|++|+.++..+. +||||+|.+.+ ...+||+++.++.||+|||+|.|.+... ...
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~---------------~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~ 66 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGL---------------SDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLW 66 (126)
T ss_pred EEEEEEEEeECCCCCCCCCC---------------CCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCE
Confidence 48999999999998887665 89999999865 3557999999999999999999999875 578
Q ss_pred EEEEEEEccCC-CCcceeeEEEeceeecc---CCceeeeEeeccCCCCCCCCCceeEEEEEee
Q 001126 425 VHFFVKDSDVV-GSELIGTVAIPVEQIYS---GGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1149)
Q Consensus 425 L~~~V~D~D~~-~ddfIG~v~Ipl~~L~~---G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f~ 483 (1149)
|.|+|||++.. .+++||++.++|.++.. |...+.|++|. + .|+|+|.+.+.
T Consensus 67 L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~-~-------~g~i~l~~~~~ 121 (126)
T cd04043 67 ISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD-T-------QGRLLLRVSME 121 (126)
T ss_pred EEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcC-C-------CCeEEEEEEEe
Confidence 99999999986 58899999999988653 44667899994 2 24778887764
No 70
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.60 E-value=4.6e-15 Score=146.76 Aligned_cols=101 Identities=24% Similarity=0.357 Sum_probs=88.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCeeceEEEEEccCC-
Q 001126 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1149)
Q Consensus 347 GtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~rTkVi~nt~nPvWNE~F~f~v~~~- 421 (1149)
+.|.|+|++|+||+.+|..+. +||||+|.+.. ...+||++++++.||+|||+|.|.+...
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~---------------~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~ 80 (127)
T cd04030 16 QKLIVTVHKCRNLPPCDSSDI---------------PDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE 80 (127)
T ss_pred CEEEEEEEEEECCCCccCCCC---------------CCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHH
Confidence 679999999999999887665 89999999953 3346999999999999999999998643
Q ss_pred --CceEEEEEEEccCC---CCcceeeEEEeceeeccCCceeeeEee
Q 001126 422 --AAEVHFFVKDSDVV---GSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1149)
Q Consensus 422 --~~~L~~~V~D~D~~---~ddfIG~v~Ipl~~L~~G~~~~~W~pL 462 (1149)
...|.|+|||++.. .+++||++.|++.+|..+...+.||+|
T Consensus 81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 36899999999873 689999999999999887788899998
No 71
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.60 E-value=1.3e-14 Score=141.32 Aligned_cols=112 Identities=23% Similarity=0.418 Sum_probs=89.0
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCC---CceE
Q 001126 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS---AAEV 425 (1149)
Q Consensus 349 L~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~---~~~L 425 (1149)
|+|+|++|++|+.. +. +||||+|.+++...+||+++++ .||+|||+|.|.+... ...|
T Consensus 2 L~v~vi~a~~l~~~---~~---------------~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l 62 (117)
T cd08383 2 LRLRILEAKNLPSK---GT---------------RDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTL 62 (117)
T ss_pred eEEEEEEecCCCcC---CC---------------CCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEE
Confidence 89999999999865 44 8999999999977789999999 9999999999999774 3567
Q ss_pred EEEEEEccCC-CCcceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEEEEEe
Q 001126 426 HFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1149)
Q Consensus 426 ~~~V~D~D~~-~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f 482 (1149)
.|.|+|.+.. .+.++|. +++..+..+...+.||+|...+++. +..|+|+|.++|
T Consensus 63 ~i~v~d~~~~~~~~~~g~--v~l~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 117 (117)
T cd08383 63 SFYNKDKRSKDRDIVIGK--VALSKLDLGQGKDEWFPLTPVDPDS-EVQGSVRLRARY 117 (117)
T ss_pred EEEEEecccCCCeeEEEE--EEecCcCCCCcceeEEECccCCCCC-CcCceEEEEEEC
Confidence 7888887654 3455665 5555556677789999997665543 346799999987
No 72
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.59 E-value=1.6e-14 Score=145.12 Aligned_cols=118 Identities=21% Similarity=0.331 Sum_probs=95.7
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccC-------
Q 001126 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAH------- 420 (1149)
Q Consensus 348 tL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~------- 420 (1149)
.|+|+|++|++|+.+|..+. +||||+|.+.+.. +||++++++.||+|||+|.|.+..
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~-~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~ 65 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGL---------------SDPFARVSFLNQS-QETEVIKETLSPTWDQTLIFDEVELYGSPEE 65 (135)
T ss_pred EEEEEEEEeecCcCCCCCCC---------------CCCEEEEEECCee-eEeeeEcCCCCCccCcEEEEeeeeccCChHH
Confidence 38999999999999998776 8999999998876 499999999999999999997532
Q ss_pred ---CCceEEEEEEEccCC-CCcceeeEEE-eceeecc---CCceeeeEeeccCCCCCCCCCceeEEEEEeecc
Q 001126 421 ---SAAEVHFFVKDSDVV-GSELIGTVAI-PVEQIYS---GGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPM 485 (1149)
Q Consensus 421 ---~~~~L~~~V~D~D~~-~ddfIG~v~I-pl~~L~~---G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f~p~ 485 (1149)
....|.|+|||+|.. .|++||++.+ |+..+.. +.....|++|. +.|+ ..|+|.|.+.+.++
T Consensus 66 ~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~-~~~~---~~Geil~~~~~~~~ 134 (135)
T cd04017 66 IAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIY-KGGQ---SAGELLAAFELIEV 134 (135)
T ss_pred hhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEee-cCCC---chhheeEEeEEEEe
Confidence 125799999999985 4789999987 6555553 35667999996 4443 34699999998775
No 73
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.59 E-value=5.9e-15 Score=143.01 Aligned_cols=96 Identities=23% Similarity=0.359 Sum_probs=80.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCCC--ce
Q 001126 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA--AE 424 (1149)
Q Consensus 347 GtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~~--~~ 424 (1149)
|.|.|+|++|++|+..|.... ....+||||+|.+++... ||++++++.||+|||+|.|.+.+.. ..
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~-----------~~~~~DPYv~v~~~~~~~-kT~v~~~t~nPvWne~f~f~v~~~~~~~~ 68 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTR-----------TGFDMDPFVIISFGRRVF-RTSWRRHTLNPVFNERLAFEVYPHEKNFD 68 (108)
T ss_pred CEEEEEEEeeeCCCCccccCC-----------CCCccCceEEEEECCEeE-eeeeecCCCCCcccceEEEEEeCccCCCE
Confidence 789999999999998764321 001279999999987664 9999999999999999999986543 57
Q ss_pred EEEEEEEccCC-CCcceeeEEEeceeeccCC
Q 001126 425 VHFFVKDSDVV-GSELIGTVAIPVEQIYSGG 454 (1149)
Q Consensus 425 L~~~V~D~D~~-~ddfIG~v~Ipl~~L~~G~ 454 (1149)
|.|+|||+|.. .|++||++.|+|++|..+.
T Consensus 69 L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 69 IQFKVLDKDKFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred EEEEEEECCCCCCCcceEEEEEEHHHHHhhC
Confidence 99999999984 6889999999999999764
No 74
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.59 E-value=8.3e-15 Score=142.44 Aligned_cols=105 Identities=32% Similarity=0.448 Sum_probs=92.4
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCC-CceEEE
Q 001126 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHF 427 (1149)
Q Consensus 349 L~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~-~~~L~~ 427 (1149)
|+|+|++|++|+..+..+. +||||+|.+.+...++|+++.++.+|+|||+|.|.+... ...|.|
T Consensus 1 l~v~vi~a~~L~~~~~~~~---------------~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~ 65 (115)
T cd04040 1 LTVDVISAENLPSADRNGK---------------SDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKV 65 (115)
T ss_pred CEEEEEeeeCCCCCCCCCC---------------CCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEE
Confidence 5899999999998887665 899999999887778999999999999999999998764 578999
Q ss_pred EEEEccCC-CCcceeeEEEeceeeccCCceeeeEeeccCCCC
Q 001126 428 FVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGK 468 (1149)
Q Consensus 428 ~V~D~D~~-~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk 468 (1149)
+|||++.. ++++||++.+++.++..+...+.|++|....|.
T Consensus 66 ~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~~ 107 (115)
T cd04040 66 EVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGGG 107 (115)
T ss_pred EEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcCCCCc
Confidence 99999985 588999999999999988888999999754443
No 75
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.59 E-value=6.4e-15 Score=145.21 Aligned_cols=100 Identities=22% Similarity=0.330 Sum_probs=84.1
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCeeceEEEEEccC--
Q 001126 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAH-- 420 (1149)
Q Consensus 347 GtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~rTkVi~nt~nPvWNE~F~f~v~~-- 420 (1149)
|.|.|+|++|++|+.++..+. +||||+|.+.+ ...+||++++++.||+|||+|.|.+..
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~---------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~ 80 (125)
T cd04031 16 SQLIVTVLQARDLPPRDDGSL---------------RNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRE 80 (125)
T ss_pred CEEEEEEEEecCCCCcCCCCC---------------CCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHH
Confidence 679999999999998887665 89999999964 244699999999999999999998644
Q ss_pred --CCceEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeEee
Q 001126 421 --SAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1149)
Q Consensus 421 --~~~~L~~~V~D~D~~-~ddfIG~v~Ipl~~L~~G~~~~~W~pL 462 (1149)
....|.|+|||++.. ++++||++.++|++... .....||+|
T Consensus 81 ~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L 124 (125)
T cd04031 81 TLKERTLEVTVWDYDRDGENDFLGEVVIDLADALL-DDEPHWYPL 124 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeeEEEEecccccc-cCCcceEEC
Confidence 246899999999984 57899999999998433 234689998
No 76
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.59 E-value=7.9e-15 Score=144.81 Aligned_cols=101 Identities=26% Similarity=0.489 Sum_probs=90.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecC-CCCCeeceEEEEEccCC----
Q 001126 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISN-SEDPVWQQHFYVPVAHS---- 421 (1149)
Q Consensus 347 GtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~n-t~nPvWNE~F~f~v~~~---- 421 (1149)
|+|+|+|++|++|+.++..+. +||||+|.+.+... +|+++.+ +.||+|||+|.|.+...
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~---------------~dpyv~v~~~~~~~-~T~~~~~~t~nP~Wne~f~f~v~~~~~~~ 64 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGK---------------IDPYVIIQCRTQER-KSKVAKGDGRNPEWNEKFKFTVEYPGWGG 64 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCC---------------cCceEEEEECCEee-eeeEcCCCCCCCcccceEEEEecCcccCC
Confidence 789999999999998887765 89999999988764 8888875 99999999999999876
Q ss_pred CceEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeEeec
Q 001126 422 AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1149)
Q Consensus 422 ~~~L~~~V~D~D~~-~ddfIG~v~Ipl~~L~~G~~~~~W~pL~ 463 (1149)
...|.|+|+|++.. ++++||++.|++.++..+...+.|++|.
T Consensus 65 ~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~ 107 (124)
T cd04049 65 DTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELV 107 (124)
T ss_pred CCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEee
Confidence 47899999999885 5889999999999999888889999995
No 77
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.58 E-value=3.1e-15 Score=153.54 Aligned_cols=119 Identities=22% Similarity=0.332 Sum_probs=96.0
Q ss_pred ccCCCCCCCCCcccccCCCCCcceeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE----
Q 001126 319 YAHSDSFNGQNMQIVPSTKGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA---- 394 (1149)
Q Consensus 319 ~~~~~~~~~~g~q~Va~q~~~~~~~LlhGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~---- 394 (1149)
|.+....|...+-.|+ +.. .+ .+.|.|+|++|++|..+|..|. +||||+|.+...
T Consensus 6 ~~~~~~~~~~~~~~~~-~~~-~~----~~~L~V~vi~a~~L~~~d~~g~---------------~DPyv~v~l~~~~~~~ 64 (153)
T cd08676 6 FGVSPEEHEALLERVR-EAE-PP----IFVLKVTVIEAKGLLAKDVNGF---------------SDPYCMLGIVPASRER 64 (153)
T ss_pred hCCCHHHHHHHHHHHH-hcC-CC----eEEEEEEEEeccCCcccCCCCC---------------CCceEEEEEccccccc
Confidence 4555566665555555 222 22 3469999999999999998876 899999999531
Q ss_pred ------------------------EEeeeeeecCCCCCeeceEEEEEccCC-CceEEEEEEEccCCCCcceeeEEEecee
Q 001126 395 ------------------------VVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHFFVKDSDVVGSELIGTVAIPVEQ 449 (1149)
Q Consensus 395 ------------------------~~~rTkVi~nt~nPvWNE~F~f~v~~~-~~~L~~~V~D~D~~~ddfIG~v~Ipl~~ 449 (1149)
.++||+++.++.||+|||+|.|.+.+. ...|.|+|||++ +++||++.|++++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~ 141 (153)
T cd08676 65 NSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKD 141 (153)
T ss_pred ccccccccccccccccccccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHH
Confidence 246999999999999999999999765 478999999998 8999999999999
Q ss_pred eccCCceeeeEee
Q 001126 450 IYSGGKVEGTYPV 462 (1149)
Q Consensus 450 L~~G~~~~~W~pL 462 (1149)
|. +...+.||+|
T Consensus 142 l~-~~~~d~W~~L 153 (153)
T cd08676 142 LP-SCGLDSWFKL 153 (153)
T ss_pred hC-CCCCCCeEeC
Confidence 98 4457999987
No 78
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.58 E-value=9.8e-15 Score=144.13 Aligned_cols=102 Identities=23% Similarity=0.253 Sum_probs=87.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CEEEeeeeeecCCCCCeeceEEEEEccCC---
Q 001126 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAVVGRTFVISNSEDPVWQQHFYVPVAHS--- 421 (1149)
Q Consensus 347 GtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--g~~~~rTkVi~nt~nPvWNE~F~f~v~~~--- 421 (1149)
++|.|+|++|++|+.+|..+. +||||+|.+. +....||++++++.||+|||+|.|.+...
T Consensus 16 ~~L~v~v~~a~~L~~~d~~~~---------------~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l 80 (125)
T cd08386 16 STLTLKILKAVELPAKDFSGT---------------SDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKL 80 (125)
T ss_pred CEEEEEEEEecCCCCccCCCC---------------CCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHh
Confidence 579999999999998887775 8999999993 33446999999999999999999975322
Q ss_pred -CceEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeEeec
Q 001126 422 -AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1149)
Q Consensus 422 -~~~L~~~V~D~D~~-~ddfIG~v~Ipl~~L~~G~~~~~W~pL~ 463 (1149)
...|.|+|||+|.. ++++||++.|+++++..+...+.|++|.
T Consensus 81 ~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 81 QQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 35799999999975 5889999999999999888889999984
No 79
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.58 E-value=1.6e-15 Score=180.92 Aligned_cols=155 Identities=25% Similarity=0.324 Sum_probs=125.7
Q ss_pred cCCCCCcccCCCCCcc-cCccccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeece--------------
Q 001126 285 LSSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG-------------- 347 (1149)
Q Consensus 285 ~~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~LlhG-------------- 347 (1149)
..++-+|+-||.+++| +| |+|.|||||||.|+.||+ +|||||++ |+....+.|-.|
T Consensus 607 k~~~iefV~yNK~QlSRIY---PKgtRvdSSNymPqifWn----aGcQmVsLNfQT~dlaMQlN~g~FEyNG~sGYllKP 679 (1189)
T KOG1265|consen 607 KKSPIEFVNYNKRQLSRIY---PKGTRVDSSNYMPQIFWN----AGCQMVSLNFQTPDLAMQLNMGMFEYNGGSGYLLKP 679 (1189)
T ss_pred HhCchHHhhhhhHhhhccc---cCcccccccccchHHHHh----ccceEEEeeccCccHHHHhhhhheeecCCccceeCh
Confidence 3788999999999999 99 999999999999998888 99999999 888886655444
Q ss_pred ------------------------EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC------EEEe
Q 001126 348 ------------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG------AVVG 397 (1149)
Q Consensus 348 ------------------------tL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g------~~~~ 397 (1149)
+|.|+|++|+=|..++ ..-||.|.+-| .+..
T Consensus 680 dfmRrpDr~fdPFse~~VdgvIA~t~sV~VISgqFLSdrk-------------------vgtyVEVdmfgLP~Dt~Rk~~ 740 (1189)
T KOG1265|consen 680 DFMRRPDRQFDPFSESPVDGVIAATLSVTVISGQFLSDRK-------------------VGTYVEVDMFGLPTDTIRKEF 740 (1189)
T ss_pred HHhhCCCcCcCCcccCcccceEEeeEEEEEEeeeeccccc-------------------cCceEEEEecCCCchhhhhhh
Confidence 7999999999887543 34599999855 1223
Q ss_pred eeeeecC-CCCCeece-EEEEE-cc-CCCceEEEEEEEccCCCCcceeeEEEeceeeccCCceeeeEeeccCCCCCCC
Q 001126 398 RTFVISN-SEDPVWQQ-HFYVP-VA-HSAAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCK 471 (1149)
Q Consensus 398 rTkVi~n-t~nPvWNE-~F~f~-v~-~~~~~L~~~V~D~D~~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~ 471 (1149)
||+++.. +.||+||| -|.|. |- ...+.|+|.|++. +..|||+-.+||.-|..|. +.+-|.+..+.+..
T Consensus 741 rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeE---ggK~ig~RIlpvd~l~~GY---rhv~LRse~Nqpl~ 812 (1189)
T KOG1265|consen 741 RTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEE---GGKFIGQRILPVDGLNAGY---RHVCLRSESNQPLT 812 (1189)
T ss_pred hhccccCCCCCcccccCCcccceecccchhheeeeeecc---CCceeeeeccchhcccCcc---eeEEecCCCCCccc
Confidence 8888765 99999997 57776 32 2348899999985 5789999999999999987 45788777777654
No 80
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.58 E-value=6.9e-15 Score=146.78 Aligned_cols=102 Identities=23% Similarity=0.280 Sum_probs=85.9
Q ss_pred ceEEEEEEEEeeCCCCCCCC-CccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCeeceEEEEEccC
Q 001126 346 HGNLDIWIYSAKNLPNMDMF-HKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1149)
Q Consensus 346 hGtL~VtVieAk~L~~~D~~-g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~rTkVi~nt~nPvWNE~F~f~v~~ 420 (1149)
.+.|.|+|++|+||+.+|.. |. +||||+|.+.. ....||++++++.||+|||+|.|.+..
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~---------------~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~ 78 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKK---------------CHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEA 78 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCC---------------CCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCH
Confidence 36799999999999988864 54 89999999942 223599999999999999999999865
Q ss_pred C---CceEEEEEEEccC-CCCcceeeEEEeceeecc---CCceeeeEee
Q 001126 421 S---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYS---GGKVEGTYPV 462 (1149)
Q Consensus 421 ~---~~~L~~~V~D~D~-~~ddfIG~v~Ipl~~L~~---G~~~~~W~pL 462 (1149)
. ...|.|+|||.+. .++++||++.|+|.++.. +.....||+|
T Consensus 79 ~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 79 DLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred HHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 4 3689999999997 568899999999999864 3467799998
No 81
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.57 E-value=1.1e-14 Score=143.13 Aligned_cols=102 Identities=24% Similarity=0.415 Sum_probs=87.1
Q ss_pred ceEEEEEEEEeeCCCCCC-CCCccccccccccCCCCCCCCcEEEEEECC--E--EEeeeeeecCCCCCeeceEEEEEccC
Q 001126 346 HGNLDIWIYSAKNLPNMD-MFHKTLGGMFNSQMNTKITSDPYVTIAVAG--A--VVGRTFVISNSEDPVWQQHFYVPVAH 420 (1149)
Q Consensus 346 hGtL~VtVieAk~L~~~D-~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g--~--~~~rTkVi~nt~nPvWNE~F~f~v~~ 420 (1149)
.|.|.|+|++|+||+.++ ..+. +||||+|.+.. . ..+||++++++.||+|||+|.|.+..
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~---------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~ 77 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKR---------------SNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISK 77 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCC---------------CCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCH
Confidence 468999999999999887 4444 89999999842 1 34699999999999999999999865
Q ss_pred C---CceEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeEee
Q 001126 421 S---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1149)
Q Consensus 421 ~---~~~L~~~V~D~D~~-~ddfIG~v~Ipl~~L~~G~~~~~W~pL 462 (1149)
. ...|.|+|||++.. .+++||++.+++.++..+...+.||+|
T Consensus 78 ~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 78 SQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred HHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 3 36899999999974 578999999999999877778999987
No 82
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.57 E-value=6.4e-15 Score=147.25 Aligned_cols=109 Identities=22% Similarity=0.343 Sum_probs=92.0
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCeeceEEEEEccCC
Q 001126 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1149)
Q Consensus 346 hGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~rTkVi~nt~nPvWNE~F~f~v~~~ 421 (1149)
.|.|.|+|++|++|+.+|..+. +||||+|.+.. ....||++++++.||+|||+|.|.+...
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~---------------~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~ 76 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGY---------------SDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHS 76 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCC---------------CCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHH
Confidence 4789999999999999888765 89999999953 2346999999999999999999998754
Q ss_pred ---CceEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeEeeccCCCCCCC
Q 001126 422 ---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCK 471 (1149)
Q Consensus 422 ---~~~L~~~V~D~D~~-~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~ 471 (1149)
...|.|+|||+|.. .+++||++.|++.+ .|...+.|++++...+++..
T Consensus 77 ~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~~~~ 128 (133)
T cd08384 77 DLAKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDKKIE 128 (133)
T ss_pred HhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCCCChh
Confidence 36799999999974 57899999999985 46667899999887776543
No 83
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.57 E-value=1.7e-14 Score=139.83 Aligned_cols=97 Identities=21% Similarity=0.309 Sum_probs=83.9
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCC-----C
Q 001126 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-----A 422 (1149)
Q Consensus 348 tL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~-----~ 422 (1149)
.|+|+|++|++|+ .+. +||||+|.+++++. ||++++++.||+|||+|.|.+..+ .
T Consensus 5 ~l~V~v~~a~~L~----~~~---------------~dpyv~v~~~~~~~-kT~~~~~t~nP~wne~f~f~~~~~~~~l~~ 64 (111)
T cd04011 5 QVRVRVIEARQLV----GGN---------------IDPVVKVEVGGQKK-YTSVKKGTNCPFYNEYFFFNFHESPDELFD 64 (111)
T ss_pred EEEEEEEEcccCC----CCC---------------CCCEEEEEECCEee-eeeEEeccCCCccccEEEEecCCCHHHHhc
Confidence 4899999999998 233 89999999998875 999999999999999999998654 2
Q ss_pred ceEEEEEEEccCC-CCcceeeEEEeceeeccC---CceeeeEeecc
Q 001126 423 AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSG---GKVEGTYPVLN 464 (1149)
Q Consensus 423 ~~L~~~V~D~D~~-~ddfIG~v~Ipl~~L~~G---~~~~~W~pL~~ 464 (1149)
..|.|+|+|++.. ++++||++.|+++++..+ ...+.|++|.+
T Consensus 65 ~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 65 KIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred CeEEEEEEcCcccccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 5799999999985 589999999999999866 44688999965
No 84
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.56 E-value=1.5e-14 Score=140.58 Aligned_cols=97 Identities=20% Similarity=0.366 Sum_probs=85.0
Q ss_pred CCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCC-CceEEEEEEEccCCCCcceeeEEEeceeecc-CCceeeeE
Q 001126 383 SDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHFFVKDSDVVGSELIGTVAIPVEQIYS-GGKVEGTY 460 (1149)
Q Consensus 383 sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~-~~~L~~~V~D~D~~~ddfIG~v~Ipl~~L~~-G~~~~~W~ 460 (1149)
+||||+|.++++..+||+++.++.||+|||+|.|.+.+. ...|.|+|+|++..++++||.+.++|+++.. +...+.||
T Consensus 13 ~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~~~w~ 92 (111)
T cd04052 13 LSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVGQQWF 92 (111)
T ss_pred CCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhccceeE
Confidence 899999999988778999999999999999999999876 4779999999998889999999999999864 44568999
Q ss_pred eeccCCCCCCCCCceeEEEEEeecc
Q 001126 461 PVLNGSGKPCKPGATLTLSIQYTPM 485 (1149)
Q Consensus 461 pL~~~~Gk~~~~~g~L~L~L~f~p~ 485 (1149)
+|.+ + ..|+|+++++|.|+
T Consensus 93 ~L~~---~---~~G~i~~~~~~~p~ 111 (111)
T cd04052 93 PLSG---N---GQGRIRISALWKPV 111 (111)
T ss_pred ECCC---C---CCCEEEEEEEEecC
Confidence 9964 2 24799999999985
No 85
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.56 E-value=9.9e-15 Score=144.87 Aligned_cols=102 Identities=21% Similarity=0.298 Sum_probs=85.9
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC-----EEEeeeeeecCCCCCeeceEEEEEccC
Q 001126 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-----AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1149)
Q Consensus 346 hGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g-----~~~~rTkVi~nt~nPvWNE~F~f~v~~ 420 (1149)
.|.|.|+|++|+||+.++..+. +||||+|++-. ...+||+|++++.||+|||+|.|++..
T Consensus 13 ~~~L~V~V~~arnL~~~~~~~~---------------~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~ 77 (124)
T cd08680 13 DSSLVISVEQLRNLSALSIPEN---------------SKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISS 77 (124)
T ss_pred CCEEEEEEeEecCCcccccCCC---------------CCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCH
Confidence 3679999999999998876655 89999999842 224699999999999999999999876
Q ss_pred C---CceEEEEEEEccCC-CCcceeeEEEeceeecc-CCceeeeEee
Q 001126 421 S---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYS-GGKVEGTYPV 462 (1149)
Q Consensus 421 ~---~~~L~~~V~D~D~~-~ddfIG~v~Ipl~~L~~-G~~~~~W~pL 462 (1149)
. ...|.|+|||++.. .+++||++.|++.++.. +.....||+|
T Consensus 78 ~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 78 TKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred HHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 4 47899999999884 58899999999999954 4457789876
No 86
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.56 E-value=3.3e-14 Score=145.97 Aligned_cols=118 Identities=17% Similarity=0.321 Sum_probs=92.7
Q ss_pred EEEEEEEeeC--CCCCCCCCccccccccccCCCCCCCCcEEEEEE----CCEEEeeeeeecCCCCCeeceEEEEEccCC-
Q 001126 349 LDIWIYSAKN--LPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV----AGAVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1149)
Q Consensus 349 L~VtVieAk~--L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l----~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~- 421 (1149)
+.++|..|.+ |+..+..+. +||||++++ .+....||+|+++|.||+|||+|.|.+...
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~---------------~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~ 68 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKD---------------LDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKH 68 (155)
T ss_pred eEEEEEEeeccccCCCcCCCC---------------CCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEecccc
Confidence 4555555555 666555444 899999998 344456999999999999999999998654
Q ss_pred --------CceEEEEEEEccCC--CCcceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEEEEEeec
Q 001126 422 --------AAEVHFFVKDSDVV--GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1149)
Q Consensus 422 --------~~~L~~~V~D~D~~--~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f~p 484 (1149)
...|.|+|||++.+ .|++||++.|+|+.+........|++|++ ..|+ .||+|+++++...
T Consensus 69 ~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~-~~k~--~Gg~l~v~ir~r~ 138 (155)
T cd08690 69 RSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMD-GRKA--TGGKLEVKVRLRE 138 (155)
T ss_pred chhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhh-CCCC--cCCEEEEEEEecC
Confidence 24699999999874 69999999999999987767778999974 3443 4579999999654
No 87
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.54 E-value=3.6e-14 Score=139.61 Aligned_cols=103 Identities=18% Similarity=0.243 Sum_probs=88.0
Q ss_pred ceEEEEEEEEeeCCCCCC-CCCccccccccccCCCCCCCCcEEEEEEC--CEEEeeeeeecCCCCCeeceEEEEEccCC-
Q 001126 346 HGNLDIWIYSAKNLPNMD-MFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1149)
Q Consensus 346 hGtL~VtVieAk~L~~~D-~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--g~~~~rTkVi~nt~nPvWNE~F~f~v~~~- 421 (1149)
.+.|.|+|++|++|+.++ ..+. +||||+|.+. +...+||++++++.||+|||+|.|.+...
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~---------------~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~ 77 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAH---------------CDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKE 77 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCC---------------CCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHH
Confidence 457999999999999887 4554 8999999983 34456999999999999999999998654
Q ss_pred --CceEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeEeec
Q 001126 422 --AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1149)
Q Consensus 422 --~~~L~~~V~D~D~~-~ddfIG~v~Ipl~~L~~G~~~~~W~pL~ 463 (1149)
...|.|+|||++.. .+++||++.|+|.++......+.|++|.
T Consensus 78 l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 78 LQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred hcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 35799999999985 4789999999999999877788999984
No 88
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.54 E-value=2.1e-14 Score=144.37 Aligned_cols=108 Identities=27% Similarity=0.402 Sum_probs=90.9
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CEE--EeeeeeecCCCCCeeceEEEEEccCC
Q 001126 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAV--VGRTFVISNSEDPVWQQHFYVPVAHS 421 (1149)
Q Consensus 346 hGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--g~~--~~rTkVi~nt~nPvWNE~F~f~v~~~ 421 (1149)
.+.|.|+|++|++|+.+|..|. +||||+|.+. +.. ..||+|++++.||+|||+|.|.+...
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~---------------~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~ 78 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGL---------------ADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSE 78 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCC---------------CCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHH
Confidence 4579999999999999887776 8999999984 332 35899999999999999999998643
Q ss_pred ---CceEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeEeeccCCCCCC
Q 001126 422 ---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1149)
Q Consensus 422 ---~~~L~~~V~D~D~~-~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~ 470 (1149)
...|.|+|||+|.. ++++||++.|++.. .+...+.|++|.+..|++.
T Consensus 79 ~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~~i 129 (136)
T cd08404 79 ELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRRQI 129 (136)
T ss_pred HhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCCee
Confidence 35789999999985 58899999999998 4666789999987777754
No 89
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.54 E-value=1.2e-14 Score=146.61 Aligned_cols=109 Identities=20% Similarity=0.242 Sum_probs=90.5
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CEE--EeeeeeecCCCCCeeceEEEEEccCC
Q 001126 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAV--VGRTFVISNSEDPVWQQHFYVPVAHS 421 (1149)
Q Consensus 346 hGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--g~~--~~rTkVi~nt~nPvWNE~F~f~v~~~ 421 (1149)
.+.|.|+|++|+||+.+|..+. +||||+|.+. +.+ ..||+|++++.||+|||+|.|.+...
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~---------------~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~ 78 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTT---------------ADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAI 78 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCC---------------CCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHH
Confidence 3579999999999998887665 8999999993 222 34999999999999999999998653
Q ss_pred ---CceEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeEeeccCCCCCCC
Q 001126 422 ---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCK 471 (1149)
Q Consensus 422 ---~~~L~~~V~D~D~-~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~ 471 (1149)
...|+|+|+|+|. .++++||++.|+.. ..|...+.|..++...+++..
T Consensus 79 ~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~--~~g~~~~hW~~ml~~~~~~v~ 130 (136)
T cd08406 79 VLQDLSLRVTVAESTEDGKTPNVGHVIIGPA--ASGMGLSHWNQMLASLRKPVA 130 (136)
T ss_pred HhCCcEEEEEEEeCCCCCCCCeeEEEEECCC--CCChhHHHHHHHHHCCCCeee
Confidence 4679999999997 56899999999776 357777899999887777543
No 90
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.54 E-value=4.1e-14 Score=141.18 Aligned_cols=102 Identities=25% Similarity=0.354 Sum_probs=83.5
Q ss_pred eEEEEEEEEeeCCCCCCCC-CccccccccccCCCCCCCCcEEEEEEC--CEEEeeeeeecCCCCCeeceEEEEE-ccCC-
Q 001126 347 GNLDIWIYSAKNLPNMDMF-HKTLGGMFNSQMNTKITSDPYVTIAVA--GAVVGRTFVISNSEDPVWQQHFYVP-VAHS- 421 (1149)
Q Consensus 347 GtL~VtVieAk~L~~~D~~-g~~~~~~~~k~~~~~~~sDPYV~V~l~--g~~~~rTkVi~nt~nPvWNE~F~f~-v~~~- 421 (1149)
++|.|+|++|++|+.+|.. +. +||||+|.+. +...+||++++++.||+|||+|.|. +...
T Consensus 16 ~~L~V~Vi~a~~L~~~~~~~~~---------------~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~ 80 (128)
T cd08388 16 KALLVNIIECRDLPAMDEQSGT---------------SDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQ 80 (128)
T ss_pred CEEEEEEEEeECCCCCCCCCCC---------------cCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHH
Confidence 5799999999999988765 44 8999999995 2334599999999999999999994 4321
Q ss_pred --CceEEEEEEEccCC-CCcceeeEEEeceeeccC--CceeeeEeec
Q 001126 422 --AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSG--GKVEGTYPVL 463 (1149)
Q Consensus 422 --~~~L~~~V~D~D~~-~ddfIG~v~Ipl~~L~~G--~~~~~W~pL~ 463 (1149)
...|+|+|||+|.. ++++||++.|+|+++..+ .....|.+|.
T Consensus 81 ~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 81 LQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred hCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 35799999999874 688999999999999644 5577898873
No 91
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.53 E-value=8.9e-15 Score=147.75 Aligned_cols=111 Identities=19% Similarity=0.222 Sum_probs=91.5
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC--E--EEeeeeeecCCCCCeeceEEEEEccCC
Q 001126 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--A--VVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1149)
Q Consensus 346 hGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g--~--~~~rTkVi~nt~nPvWNE~F~f~v~~~ 421 (1149)
.|.|.|+|++|+||..+|.... .++||||+|.+.. + ..+||++++++.||+|||+|.|.+.+.
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~-------------~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~ 80 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLL-------------LGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSE 80 (138)
T ss_pred CCeEEEEEEEecCCCccccCCC-------------CCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHH
Confidence 4789999999999998884311 0289999999854 2 235999999999999999999998764
Q ss_pred ---CceEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeEeeccCCCCCCC
Q 001126 422 ---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCK 471 (1149)
Q Consensus 422 ---~~~L~~~V~D~D~~-~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~ 471 (1149)
...|.|+|+|+|.. ++++||++.|++.. .|...++|..++...+++..
T Consensus 81 ~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~p~~~va 132 (138)
T cd08407 81 LLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDNPRRQIA 132 (138)
T ss_pred HhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhCCCCchh
Confidence 36799999999984 58899999999974 67778899999987777654
No 92
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.53 E-value=1.9e-14 Score=144.25 Aligned_cols=110 Identities=30% Similarity=0.402 Sum_probs=91.4
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CE--EEeeeeeecCCCCCeeceEEEEEccC
Q 001126 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GA--VVGRTFVISNSEDPVWQQHFYVPVAH 420 (1149)
Q Consensus 345 lhGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--g~--~~~rTkVi~nt~nPvWNE~F~f~v~~ 420 (1149)
.+|+|+|+|++|++|+.+|..+. +||||+|.+. +. ..+||++++++.||+|||+|.|.+..
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~---------------~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~ 76 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGF---------------SDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPP 76 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCC---------------CCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCH
Confidence 35789999999999999988776 8999999984 32 34599999999999999999999864
Q ss_pred CC---ceEEEEEEEccCCC-CcceeeEEEeceeeccCCceeeeEeeccCCCCCCC
Q 001126 421 SA---AEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCK 471 (1149)
Q Consensus 421 ~~---~~L~~~V~D~D~~~-ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~ 471 (1149)
.. ..|.|+|||+|..+ +++||++.|++. ..+...+.|++++...|++..
T Consensus 77 ~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~~~~~~ 129 (134)
T cd08403 77 ENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANPRKPIA 129 (134)
T ss_pred HHhCCCEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCCCCeee
Confidence 32 46999999999855 899999999987 345556799999988887643
No 93
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.53 E-value=1e-13 Score=136.97 Aligned_cols=116 Identities=29% Similarity=0.501 Sum_probs=95.6
Q ss_pred EEEEEEEEeeCCCCCC--CCCccccccccccCCCCCCCCcEEEEEECC-----EEEeeeeeecCCC-CCeeceEEEEEcc
Q 001126 348 NLDIWIYSAKNLPNMD--MFHKTLGGMFNSQMNTKITSDPYVTIAVAG-----AVVGRTFVISNSE-DPVWQQHFYVPVA 419 (1149)
Q Consensus 348 tL~VtVieAk~L~~~D--~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g-----~~~~rTkVi~nt~-nPvWNE~F~f~v~ 419 (1149)
.|+|+|++|++|+.++ ..+. .||||+|++.+ ....||+++.++. ||+|||+|.|.+.
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~---------------~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~ 67 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSI---------------VDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVT 67 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCc---------------cCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEe
Confidence 4899999999999877 3443 89999999943 2335999988876 9999999999987
Q ss_pred CCC-ceEEEEEEEccCCCCcceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEEEEEe
Q 001126 420 HSA-AEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1149)
Q Consensus 420 ~~~-~~L~~~V~D~D~~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f 482 (1149)
.+. ..|.|+|+|++..++++||++.+++++|..|. +|++|.+.+|+.. ..|.|.+++++
T Consensus 68 ~~~~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~~g~---~~~~l~~~~~~~~-~~~~l~v~~~~ 127 (128)
T cd00275 68 VPELAFLRFVVYDEDSGDDDFLGQACLPLDSLRQGY---RHVPLLDSKGEPL-ELSTLFVHIDI 127 (128)
T ss_pred CCCeEEEEEEEEeCCCCCCcEeEEEEEEhHHhcCce---EEEEecCCCCCCC-cceeEEEEEEE
Confidence 664 67999999998888899999999999997653 7899998888743 34688888775
No 94
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.53 E-value=1.4e-14 Score=145.63 Aligned_cols=109 Identities=27% Similarity=0.401 Sum_probs=90.9
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CE--EEeeeeeecCCCCCeeceEEEEEccC
Q 001126 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GA--VVGRTFVISNSEDPVWQQHFYVPVAH 420 (1149)
Q Consensus 345 lhGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--g~--~~~rTkVi~nt~nPvWNE~F~f~v~~ 420 (1149)
.+|+|+|+|++|++|+.+|..+. +||||+|.+. +. ..+||++++++.||+|||+|.|.+..
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~---------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~ 77 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGL---------------SDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPF 77 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCC---------------CCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCH
Confidence 35789999999999998887775 8999999994 22 34589999999999999999999864
Q ss_pred CC---ceEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeEeeccCCCCCC
Q 001126 421 SA---AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1149)
Q Consensus 421 ~~---~~L~~~V~D~D~~-~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~ 470 (1149)
.. ..|.|+|||++.. .+++||++.|++.. .|...+.|++++...+++.
T Consensus 78 ~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~~~~~~~ 129 (136)
T cd08402 78 EQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA--TGAELRHWSDMLASPRRPI 129 (136)
T ss_pred HHhCCCEEEEEEEeCCCCCCCceeEEEEECCcc--CChHHHHHHHHHhCCCCee
Confidence 42 4799999999985 57899999999975 3666789999987766654
No 95
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.52 E-value=4.3e-14 Score=140.18 Aligned_cols=101 Identities=19% Similarity=0.259 Sum_probs=85.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CEEEeeeeeecCCCCCeeceEEEEE-ccCC--
Q 001126 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAVVGRTFVISNSEDPVWQQHFYVP-VAHS-- 421 (1149)
Q Consensus 347 GtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--g~~~~rTkVi~nt~nPvWNE~F~f~-v~~~-- 421 (1149)
+.|.|+|++|+||+.++..+. +||||++.+. +....||+|+++ .||+|||+|.|+ +...
T Consensus 16 ~~L~V~Vi~a~nL~~~~~~~~---------------~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l 79 (124)
T cd08389 16 RKLTVTVIRAQDIPTKDRGGA---------------SSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEEL 79 (124)
T ss_pred CEEEEEEEEecCCCchhcCCC---------------CCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHh
Confidence 579999999999998887665 8999998873 234469999888 999999999998 5432
Q ss_pred -CceEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeEeec
Q 001126 422 -AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1149)
Q Consensus 422 -~~~L~~~V~D~D~~-~ddfIG~v~Ipl~~L~~G~~~~~W~pL~ 463 (1149)
...|.|+|+|++.. ++++||++.|+|+++..+.....|++|.
T Consensus 80 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 80 NNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred ccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 46799999999974 4889999999999998888888999984
No 96
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.52 E-value=4.8e-14 Score=142.30 Aligned_cols=101 Identities=19% Similarity=0.379 Sum_probs=86.9
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC---EEEeeeeeecCCCCCeeceEEEEEccCC----
Q 001126 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG---AVVGRTFVISNSEDPVWQQHFYVPVAHS---- 421 (1149)
Q Consensus 349 L~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g---~~~~rTkVi~nt~nPvWNE~F~f~v~~~---- 421 (1149)
|.|+|++|++|+.+ ..+. +||||+|.+.+ ...+||+++.++.||+|||+|.|.+...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~---------------~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~ 64 (137)
T cd08675 1 LSVRVLECRDLALK-SNGT---------------CDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYE 64 (137)
T ss_pred CEEEEEEccCCCcc-cCCC---------------CCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEcccccccc
Confidence 68999999999977 5554 89999999983 3446999999999999999999998764
Q ss_pred ------------CceEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeEeeccC
Q 001126 422 ------------AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNG 465 (1149)
Q Consensus 422 ------------~~~L~~~V~D~D~~-~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~ 465 (1149)
...|+|+|||++.. +++|||++.|++.++..+.....||+|...
T Consensus 65 ~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 65 KKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred ccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 35799999999986 689999999999999877677899999644
No 97
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.52 E-value=4.6e-14 Score=140.66 Aligned_cols=88 Identities=28% Similarity=0.397 Sum_probs=76.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccC--CCce
Q 001126 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAH--SAAE 424 (1149)
Q Consensus 347 GtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~--~~~~ 424 (1149)
|+|+|+|++|++|+ .+..+. +||||+|.+++.+ +||++++++.||+|||+|.|.... ....
T Consensus 28 ~~L~V~V~~A~~L~-~d~~g~---------------~DPYVkV~~~~~~-~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~ 90 (127)
T cd04032 28 ATLTVTVLRATGLW-GDYFTS---------------TDGYVKVFFGGQE-KRTEVIWNNNNPRWNATFDFGSVELSPGGK 90 (127)
T ss_pred EEEEEEEEECCCCC-cCcCCC---------------CCeEEEEEECCcc-ccCceecCCCCCcCCCEEEEecccCCCCCE
Confidence 67999999999998 455554 8999999998884 599999999999999999997533 3578
Q ss_pred EEEEEEEccCC-CCcceeeEEEeceeec
Q 001126 425 VHFFVKDSDVV-GSELIGTVAIPVEQIY 451 (1149)
Q Consensus 425 L~~~V~D~D~~-~ddfIG~v~Ipl~~L~ 451 (1149)
|+|+|||+|.. .|++||++.++|....
T Consensus 91 L~v~V~D~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 91 LRFEVWDRDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred EEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence 99999999985 7899999999998655
No 98
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.52 E-value=4.2e-14 Score=146.75 Aligned_cols=103 Identities=25% Similarity=0.369 Sum_probs=84.8
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC----CEEEeeeeeecCCCCCeeceEEEEEccC
Q 001126 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA----GAVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1149)
Q Consensus 345 lhGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~----g~~~~rTkVi~nt~nPvWNE~F~f~v~~ 420 (1149)
..|+|.|+|++|+||+..|..+. +||||+|.+. +...+||+|++++.||+|||+|.|.+..
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~---------------~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~ 89 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGT---------------SDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVS 89 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCC---------------CCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCC
Confidence 46889999999999998887665 8999999983 2344699999999999999999998542
Q ss_pred C----CceEEEEEEEccCCC-CcceeeEEEeceeeccCCceeeeEee
Q 001126 421 S----AAEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPV 462 (1149)
Q Consensus 421 ~----~~~L~~~V~D~D~~~-ddfIG~v~Ipl~~L~~G~~~~~W~pL 462 (1149)
. ...|.|+|||+|..+ +++||++.+++.++..-...+.|+.|
T Consensus 90 ~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 90 PEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred HHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 2 257999999999855 89999999999998744445566655
No 99
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.51 E-value=3.5e-14 Score=142.63 Aligned_cols=109 Identities=22% Similarity=0.349 Sum_probs=91.4
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CE--EEeeeeeecCCCCCeeceEEEEEccCC
Q 001126 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GA--VVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1149)
Q Consensus 346 hGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--g~--~~~rTkVi~nt~nPvWNE~F~f~v~~~ 421 (1149)
.|+|.|+|++|++|+.++..+. +||||+|.+. +. ...||++++++.||+|||+|.|.+...
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~---------------~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~ 78 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGT---------------SDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLE 78 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCC---------------CCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHH
Confidence 4789999999999998887776 8999999983 22 235999999999999999999997532
Q ss_pred ---CceEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeEeeccCCCCCCC
Q 001126 422 ---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCK 471 (1149)
Q Consensus 422 ---~~~L~~~V~D~D~~-~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~ 471 (1149)
...|.|+|+|++.. .+++||++.|++.+. |...+.|++|+...+++..
T Consensus 79 ~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~~~~~ 130 (136)
T cd08405 79 RLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPRQPVA 130 (136)
T ss_pred HhCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCCCchh
Confidence 35799999999985 578999999999876 6667899999987777643
No 100
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.51 E-value=1.7e-13 Score=142.61 Aligned_cols=144 Identities=22% Similarity=0.248 Sum_probs=108.2
Q ss_pred hHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHHHHhcCCeEEEEEecCCCccccccccccccccc
Q 001126 545 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQT 624 (1149)
Q Consensus 545 ~~f~al~eAI~~Ak~sI~I~~W~~~p~i~L~r~~~~~~g~rL~dlL~~kA~rGVkVrILVwD~~gs~~~~g~k~~g~m~~ 624 (1149)
++++.++++|.+|+++|+|+.|.|++.. ......|.+.|++++++||+|+||+++.......
T Consensus 21 ~~~~~i~~~I~~A~~~I~i~~~~~~~~~-------~~~~~~l~~~L~~a~~rGv~V~il~~~~~~~~~~----------- 82 (176)
T cd00138 21 SDLDALLEAISNAKKSIYIASFYLSPLI-------TEYGPVILDALLAAARRGVKVRILVDEWSNTDLK----------- 82 (176)
T ss_pred hHHHHHHHHHHhhheEEEEEEeEecccc-------cccchHHHHHHHHHHHCCCEEEEEEcccccCCch-----------
Confidence 6899999999999999999999765422 0135789999999999999999998544321100
Q ss_pred ccHHHHHHhcc---CCcEEEEccCccccccccccccccccccccccceEEecCCCCCCCccEEEEEcccccCCCCCCCCC
Q 001126 625 HDEETRRVFKH---SSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPH 701 (1149)
Q Consensus 625 ~~~~t~~~l~~---~gV~v~l~p~~~~~~~~~~~~~~~~~~~rHHQKiVVVD~~~~~~~r~~vAFVGGiNL~dgRwDt~~ 701 (1149)
........+.. .++++...+.... ...++|+|++|||++ ++++||.|+.+.+|.
T Consensus 83 ~~~~~~~~l~~~~~~~i~~~~~~~~~~------------~~~~~H~K~~iiD~~--------~~~vGS~N~~~~~~~--- 139 (176)
T cd00138 83 ISSAYLDSLRALLDIGVRVFLIRTDKT------------YGGVLHTKLVIVDDE--------TAYIGSANLDGRSLT--- 139 (176)
T ss_pred HHHHHHHHHHHhhcCceEEEEEcCCcc------------cccceeeeEEEEcCC--------EEEEECCcCChhhhh---
Confidence 01122333443 3788776543210 235799999999996 999999999997552
Q ss_pred CCccccccccCCCCCCCCccccCCCCCCCCCCeeeeeeEEcCH--HHHHHHHHHHHHHHhh
Q 001126 702 HPLFRTLQTLHKDDYHNPTFTQGNTTGCPREPWHDLHSKIDGP--AAYDVLTNFEERWRKA 760 (1149)
Q Consensus 702 H~l~~~~~~~~~~Dy~np~~~~~~~~~~pr~PWHDv~vrI~GP--aa~Dl~~~F~qrWn~~ 760 (1149)
.++|+.+.+++| +|.++.+.|.+.|+..
T Consensus 140 -------------------------------~~~e~~~~~~~~~~~~~~~~~~f~~~w~~~ 169 (176)
T cd00138 140 -------------------------------LNSEVGVVIYDPASLAADLKASLERDWNST 169 (176)
T ss_pred -------------------------------hhcceEEEEeChHHHHHHHHHHHHHHHhcC
Confidence 457999999999 7999999999999964
No 101
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.51 E-value=7.1e-14 Score=139.37 Aligned_cols=107 Identities=26% Similarity=0.405 Sum_probs=91.0
Q ss_pred eeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCeeceEEEEEcc
Q 001126 344 LLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVA 419 (1149)
Q Consensus 344 LlhGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~rTkVi~nt~nPvWNE~F~f~v~ 419 (1149)
+-.|+|+|+|++|++|+..+..+. +||||+|.+.+ ...+||++++++.||.|||+|.|.+.
T Consensus 10 ~~~~~l~v~i~~a~nL~~~~~~~~---------------~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~ 74 (131)
T cd04026 10 VKDNKLTVEVREAKNLIPMDPNGL---------------SDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLK 74 (131)
T ss_pred ECCCEEEEEEEEeeCCCCcCCCCC---------------CCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCC
Confidence 344789999999999998776654 89999999963 34579999999999999999999987
Q ss_pred CC--CceEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeEeeccCC
Q 001126 420 HS--AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGS 466 (1149)
Q Consensus 420 ~~--~~~L~~~V~D~D~~-~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~ 466 (1149)
.. ...|.|+|||++.. ++++||++.++++++... ..+.||+|.+.+
T Consensus 75 ~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~ 123 (131)
T cd04026 75 PADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQE 123 (131)
T ss_pred chhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCcc
Confidence 54 46899999999874 578999999999999854 678999998653
No 102
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.51 E-value=8.4e-14 Score=141.92 Aligned_cols=93 Identities=27% Similarity=0.474 Sum_probs=83.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCCCceEE
Q 001126 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVH 426 (1149)
Q Consensus 347 GtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~~~~L~ 426 (1149)
|.|+|+|++|++|+..|. +. +||||+|.++++. +||++++++.||+|||+|.|.+.++...|.
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~---------------sDPYV~v~~g~~~-~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~ 64 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TS---------------SDPYVVLTLGNQK-VKTRVIKKNLNPVWNEELTLSVPNPMAPLK 64 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CC---------------cCcEEEEEECCEE-EEeeeEcCCCCCeecccEEEEecCCCCEEE
Confidence 889999999999998776 44 8999999998876 599999999999999999999988888999
Q ss_pred EEEEEccCC-CCcceeeEEEeceeeccCCce
Q 001126 427 FFVKDSDVV-GSELIGTVAIPVEQIYSGGKV 456 (1149)
Q Consensus 427 ~~V~D~D~~-~ddfIG~v~Ipl~~L~~G~~~ 456 (1149)
|+|||+|.. .|++||++.+++.++......
T Consensus 65 ~~V~D~d~~~~dd~iG~a~i~l~~l~~~~~~ 95 (145)
T cd04038 65 LEVFDKDTFSKDDSMGEAEIDLEPLVEAAKL 95 (145)
T ss_pred EEEEECCCCCCCCEEEEEEEEHHHhhhhhhh
Confidence 999999975 588999999999999865433
No 103
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.50 E-value=3.6e-14 Score=141.29 Aligned_cols=107 Identities=27% Similarity=0.383 Sum_probs=92.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE----EEeeeeeecCCCCCeeceEEEEEccCC-
Q 001126 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA----VVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1149)
Q Consensus 347 GtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~----~~~rTkVi~nt~nPvWNE~F~f~v~~~- 421 (1149)
|+|.|+|++|++|+..+..+. +||||+|.+.+. ..+||+++.++.||+|||+|.|.+...
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~---------------~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~ 78 (134)
T cd00276 14 ERLTVVVLKARNLPPSDGKGL---------------SDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQ 78 (134)
T ss_pred CEEEEEEEEeeCCCCccCCCC---------------CCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHH
Confidence 689999999999998876665 899999999542 346999999999999999999998765
Q ss_pred --CceEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeEeeccCCCCCC
Q 001126 422 --AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1149)
Q Consensus 422 --~~~L~~~V~D~D~-~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~ 470 (1149)
...|.|+|+|++. .++++||++.|++.+ .|...+.|++|++..+++.
T Consensus 79 l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~~ 128 (134)
T cd00276 79 LEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKPI 128 (134)
T ss_pred hCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCce
Confidence 3789999999988 568899999999999 6777899999998777754
No 104
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.50 E-value=6.4e-14 Score=140.35 Aligned_cols=110 Identities=17% Similarity=0.251 Sum_probs=86.2
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--C--EEEeeeeeecCCC-CCeeceEEEEEccC
Q 001126 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--G--AVVGRTFVISNSE-DPVWQQHFYVPVAH 420 (1149)
Q Consensus 346 hGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--g--~~~~rTkVi~nt~-nPvWNE~F~f~v~~ 420 (1149)
.|.|+|+|++|+||+.++..+. +||||+|++- + ...+||+|+++|. ||+|||+|.|.+..
T Consensus 13 ~~rLtV~VikarnL~~~~~~~~---------------~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~ 77 (135)
T cd08692 13 NSRIQLQILEAQNLPSSSTPLT---------------LSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQ 77 (135)
T ss_pred CCeEEEEEEEccCCCcccCCCC---------------CCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCc
Confidence 4689999999999997643332 7999999984 2 2345999999995 69999999999976
Q ss_pred CC--ceEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeEeeccCCCCCCC
Q 001126 421 SA--AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCK 471 (1149)
Q Consensus 421 ~~--~~L~~~V~D~D~-~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~ 471 (1149)
.. ..|.|+|+|+|. .++++||++.|+.++. .+...++|.+++...+++..
T Consensus 78 ~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr~~ia 130 (135)
T cd08692 78 QEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPEKVVT 130 (135)
T ss_pred hhheeEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHhCCCCeee
Confidence 54 356777888876 4699999999999864 34557899999877777653
No 105
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.48 E-value=5.3e-14 Score=141.52 Aligned_cols=108 Identities=27% Similarity=0.407 Sum_probs=87.9
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC-C-E--EEeeeeeecCCCCCeeceEEEEEccCC
Q 001126 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA-G-A--VVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1149)
Q Consensus 346 hGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~-g-~--~~~rTkVi~nt~nPvWNE~F~f~v~~~ 421 (1149)
.|.|.|+|++|++|+.+|..+. +||||+|.+. + . ..+||++++++.||+|||+|.|.+...
T Consensus 13 ~~~L~V~vi~a~~L~~~d~~g~---------------~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~ 77 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTDMSQG---------------SDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQE 77 (135)
T ss_pred CCeEEEEEEEecCCCcccCCCC---------------CCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHH
Confidence 3789999999999999888776 8999999983 2 1 235999999999999999999998543
Q ss_pred ---CceEEEEEEEccC-CCCcceeeEEEeceeeccCC-ceeeeEeeccCCCCCC
Q 001126 422 ---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGG-KVEGTYPVLNGSGKPC 470 (1149)
Q Consensus 422 ---~~~L~~~V~D~D~-~~ddfIG~v~Ipl~~L~~G~-~~~~W~pL~~~~Gk~~ 470 (1149)
...|.|+|+|+|. .++++||++.|.. +..|. ..+.|+.|++..+++.
T Consensus 78 ~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~--~~~~~~~~~~W~~l~~~~~~~~ 129 (135)
T cd08410 78 ELENVSLVFTVYGHNVKSSNDFIGRIVIGQ--YSSGPSETNHWRRMLNSQRTAV 129 (135)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEEEEEEEcC--ccCCchHHHHHHHHHhCCCCEe
Confidence 2469999999997 5689999998765 33333 4689999998888764
No 106
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.48 E-value=3.6e-13 Score=133.77 Aligned_cols=116 Identities=26% Similarity=0.379 Sum_probs=89.9
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCCCceEEE
Q 001126 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 427 (1149)
Q Consensus 348 tL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~~~~L~~ 427 (1149)
.|.|+|.+|+ |...+..+. +||||+|.+++...+||++++++.||+|||+|.|.+. ....|.|
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~---------------~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~ 65 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFK---------------PDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEF 65 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCC---------------CCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEE
Confidence 5899999999 544544554 8999999999875679999999999999999999986 4578999
Q ss_pred EEEEccCC-CCcceeeEEEeceeeccCCc-----eeeeEeeccCCCCCCCCCceeEEEE
Q 001126 428 FVKDSDVV-GSELIGTVAIPVEQIYSGGK-----VEGTYPVLNGSGKPCKPGATLTLSI 480 (1149)
Q Consensus 428 ~V~D~D~~-~ddfIG~v~Ipl~~L~~G~~-----~~~W~pL~~~~Gk~~~~~g~L~L~L 480 (1149)
+|||++.. .+++||++.++|.++..+.. ...|++|.....-..+..|.|++.+
T Consensus 66 ~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 66 KVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 99999985 68899999999999985321 3358999643310123346777654
No 107
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.48 E-value=1.6e-13 Score=134.85 Aligned_cols=98 Identities=29% Similarity=0.398 Sum_probs=84.1
Q ss_pred EEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEE------EeeeeeecCCCCCeeceEEEEEccC-CCce
Q 001126 352 WIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAV------VGRTFVISNSEDPVWQQHFYVPVAH-SAAE 424 (1149)
Q Consensus 352 tVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~------~~rTkVi~nt~nPvWNE~F~f~v~~-~~~~ 424 (1149)
..++|++|+..|..+. +||||+|.+.+.. .+||++++++.||+|||+|.|.+.. ....
T Consensus 5 ~~i~a~~L~~~d~~g~---------------~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~ 69 (120)
T cd04048 5 LSISCRNLLDKDVLSK---------------SDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQK 69 (120)
T ss_pred EEEEccCCCCCCCCCC---------------CCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeE
Confidence 4589999999988776 8999999997643 5799999999999999999998643 3478
Q ss_pred EEEEEEEccC-----CCCcceeeEEEeceeeccCCceeeeEeecc
Q 001126 425 VHFFVKDSDV-----VGSELIGTVAIPVEQIYSGGKVEGTYPVLN 464 (1149)
Q Consensus 425 L~~~V~D~D~-----~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~ 464 (1149)
|.|+|||+|. .++++||++.+++.+|..+.....|++|..
T Consensus 70 l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 70 LRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred EEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 9999999995 468999999999999998877778999943
No 108
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.48 E-value=1.2e-13 Score=138.47 Aligned_cols=91 Identities=27% Similarity=0.415 Sum_probs=79.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC------EEEeeeeeecCCCCCeeceEEEEEccC
Q 001126 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG------AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1149)
Q Consensus 347 GtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g------~~~~rTkVi~nt~nPvWNE~F~f~v~~ 420 (1149)
+.|.|+|++|++|+.++..+. +||||+|.+.+ ...+||+++++++||+|||+|.|.+..
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~---------------~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~ 80 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGS---------------SDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPP 80 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCC---------------CCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEech
Confidence 469999999999998887765 89999999963 335699999999999999999999865
Q ss_pred C-----CceEEEEEEEccCCC-CcceeeEEEeceeecc
Q 001126 421 S-----AAEVHFFVKDSDVVG-SELIGTVAIPVEQIYS 452 (1149)
Q Consensus 421 ~-----~~~L~~~V~D~D~~~-ddfIG~v~Ipl~~L~~ 452 (1149)
. ...|.|+|||++..+ +++||++.|+|++|..
T Consensus 81 ~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 81 EQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred hhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 2 368999999999865 8999999999999884
No 109
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.47 E-value=9.5e-14 Score=140.11 Aligned_cols=108 Identities=19% Similarity=0.269 Sum_probs=90.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC--E--EEeeeeeecCCCCCeeceEEEEEccCC-
Q 001126 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--A--VVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1149)
Q Consensus 347 GtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g--~--~~~rTkVi~nt~nPvWNE~F~f~v~~~- 421 (1149)
+.|.|+|++|+||+.++ .+. +||||+|.+.. . ..+||++++++.||+|||+|.|.+...
T Consensus 15 ~~L~V~V~~a~nL~~~~-~~~---------------~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~ 78 (137)
T cd08409 15 NRLTVVVLRARGLRQLD-HAH---------------TSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQ 78 (137)
T ss_pred CeEEEEEEEecCCCccc-CCC---------------CCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHH
Confidence 67999999999999888 554 89999999853 2 235999999999999999999998643
Q ss_pred --CceEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeEeeccCCCCCC
Q 001126 422 --AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1149)
Q Consensus 422 --~~~L~~~V~D~D~-~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~ 470 (1149)
...|.|+|+|.+. .++++||++.|+......|...++|..++...+++.
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~i 130 (137)
T cd08409 79 LDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKELI 130 (137)
T ss_pred hCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCce
Confidence 2679999999986 568899999999877777888899999987655543
No 110
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.47 E-value=2e-14 Score=161.41 Aligned_cols=106 Identities=27% Similarity=0.427 Sum_probs=92.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC----CEEEeeeeeecCCCCCeeceEEEEEccCC-
Q 001126 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA----GAVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1149)
Q Consensus 347 GtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~----g~~~~rTkVi~nt~nPvWNE~F~f~v~~~- 421 (1149)
..|+|+|.+|+||-.||.+|. +||||++.+- +...+||++|+.++||+|||+|.|.+...
T Consensus 180 ~~l~v~i~ea~NLiPMDpNGl---------------SDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~D 244 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPMDPNGL---------------SDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSD 244 (683)
T ss_pred ceEEEEehhhccccccCCCCC---------------CCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEeccccc
Confidence 469999999999999999997 9999999993 24446999999999999999999998654
Q ss_pred -CceEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeEeeccC-CCC
Q 001126 422 -AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNG-SGK 468 (1149)
Q Consensus 422 -~~~L~~~V~D~D~-~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~-~Gk 468 (1149)
...|.|+|||||. +.+||+|..++.+++|.. ...++||.|++. .|+
T Consensus 245 kdrRlsiEvWDWDrTsRNDFMGslSFgisEl~K-~p~~GWyKlLsqeEGE 293 (683)
T KOG0696|consen 245 KDRRLSIEVWDWDRTSRNDFMGSLSFGISELQK-APVDGWYKLLSQEEGE 293 (683)
T ss_pred ccceeEEEEecccccccccccceecccHHHHhh-cchhhHHHHhhhhcCc
Confidence 4789999999998 679999999999999985 457899999875 344
No 111
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.46 E-value=5.3e-13 Score=134.77 Aligned_cols=114 Identities=25% Similarity=0.388 Sum_probs=88.8
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC--E----------EEeeeeeecCCCCCee-ceEEE
Q 001126 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--A----------VVGRTFVISNSEDPVW-QQHFY 415 (1149)
Q Consensus 349 L~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g--~----------~~~rTkVi~nt~nPvW-NE~F~ 415 (1149)
..|++++|++|+ ++.+|+ +||||+|.+.. . ...||+++++++||+| ||+|.
T Consensus 3 ~~~~~~~A~~L~-~~~fg~---------------~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~ 66 (137)
T cd08691 3 FSLSGLQARNLK-KGMFFN---------------PDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFV 66 (137)
T ss_pred EEEEEEEeCCCC-CccCCC---------------CCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEE
Confidence 689999999998 777776 89999999953 1 2469999999999999 99999
Q ss_pred EEccCCCceEEEEEEEccCC----CCcceeeEEEeceeeccCC---ceeeeEeeccCCCCCCCCCceeEEEE
Q 001126 416 VPVAHSAAEVHFFVKDSDVV----GSELIGTVAIPVEQIYSGG---KVEGTYPVLNGSGKPCKPGATLTLSI 480 (1149)
Q Consensus 416 f~v~~~~~~L~~~V~D~D~~----~ddfIG~v~Ipl~~L~~G~---~~~~W~pL~~~~Gk~~~~~g~L~L~L 480 (1149)
|.+. ....|.|+|+|++.. ++++||++.|++.+|..+. ....|++|..+... ..-.|+|.|.+
T Consensus 67 f~v~-~~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~-s~v~G~~~l~~ 136 (137)
T cd08691 67 FVGL-PTDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPT-DHVSGQLTFRF 136 (137)
T ss_pred EEcC-CCCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCC-CcEEEEEEEEe
Confidence 9986 346899999998753 2799999999999998652 35679998533322 22335666554
No 112
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.45 E-value=1.3e-12 Score=154.66 Aligned_cols=146 Identities=19% Similarity=0.179 Sum_probs=104.8
Q ss_pred CcEEEEEeecCCCccccCCCChhhhcccccccCcccchhhHHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcC
Q 001126 801 SWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGAN 880 (1149)
Q Consensus 801 ~~~vQvlRS~~~~s~~~~P~~p~~~~~~~l~~g~~~~~e~sI~~ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~ 880 (1149)
.+.++++.|++.+. +|+.. -.+..++++++|.+||+.|+|+++||+++.. . .
T Consensus 5 ~~~~~~vesiP~~~--~~~~~-----------------~~~t~~~~~~lI~~Ak~~I~I~s~yf~~~d~-------~--~ 56 (424)
T PHA02820 5 NTIAVITETIPIGM--QFDKV-----------------YLSTFNFWREILSNTTKTLDISSFYWSLSDE-------V--G 56 (424)
T ss_pred ccEEEEEEecCCCC--CCCCC-----------------CCCHHHHHHHHHHhhCcEEEEEeEEEecCcc-------c--c
Confidence 46789999987654 23210 1378899999999999999999999996421 0 0
Q ss_pred CccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCchhHHHHHHHHhhhhhHHHHHHHHHHHcCCceeeccccccccc
Q 001126 881 NLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFF 960 (1149)
Q Consensus 881 n~I~~~ial~Ia~aira~rgv~V~IVlP~~Peg~p~~~s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~ 960 (1149)
......+..+|++| +++||+|+|+++.. +.+ ....+.|+++|+++++.
T Consensus 57 ~~~G~~i~~aL~~a--A~rGV~VRIL~d~~--~~~--------------------~~~~~~L~~aGv~v~~~-------- 104 (424)
T PHA02820 57 TNFGTMILNEIIQL--PKRGVRVRIAVNKS--NKP--------------------LKDVELLQMAGVEVRYI-------- 104 (424)
T ss_pred chhHHHHHHHHHHH--HHCCCEEEEEECCC--CCc--------------------hhhHHHHHhCCCEEEEE--------
Confidence 01134566677665 46999999999852 110 12346799999988631
Q ss_pred ccCCcccccccCCCCCCCCCCCCchhhhhcccCcccceeeeEEEEEeCeEEEEcccccccCCCCCCCCcceEEEEeC
Q 001126 961 CLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQ 1037 (1149)
Q Consensus 961 ~Lr~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iYVHSKlmIVDD~~viIGSANiN~RSm~G~~DsEiav~i~d 1037 (1149)
.... +....+|+|+||||++++.|||+||+.||+. .|.|+++.+.+
T Consensus 105 ~~~~-----------------------------~~~~~~HrK~~VIDg~~~~iGS~Nid~rsl~--~n~E~gv~i~~ 150 (424)
T PHA02820 105 DITN-----------------------------ILGGVLHTKFWISDNTHIYLGSANMDWRSLT--QVKELGIAIFN 150 (424)
T ss_pred ecCC-----------------------------CCcccceeeEEEECCCEEEEeCCcCChhhhh--hCCceEEEEec
Confidence 0000 0023689999999999999999999999998 89999998875
No 113
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.45 E-value=4.6e-13 Score=132.77 Aligned_cols=89 Identities=27% Similarity=0.449 Sum_probs=78.9
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEE-eeeeeecCCCCCeeceEEEEEccCC-CceEE
Q 001126 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVV-GRTFVISNSEDPVWQQHFYVPVAHS-AAEVH 426 (1149)
Q Consensus 349 L~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~-~rTkVi~nt~nPvWNE~F~f~v~~~-~~~L~ 426 (1149)
|+|+|++|++|+.+|..+. +||||+|.+++... .||++++++.||+|||+|.|.+..+ ...|.
T Consensus 2 lrV~Vi~a~~L~~~d~~g~---------------~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~ 66 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGK---------------SDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILK 66 (124)
T ss_pred EEEEEEECcCCCCCCCCCC---------------CCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEE
Confidence 7999999999999988776 89999999988654 5899999999999999999998655 47899
Q ss_pred EEEEEccCC-CCcceeeEEEeceeecc
Q 001126 427 FFVKDSDVV-GSELIGTVAIPVEQIYS 452 (1149)
Q Consensus 427 ~~V~D~D~~-~ddfIG~v~Ipl~~L~~ 452 (1149)
|+|||+|.. .+++||++.|++.+...
T Consensus 67 ~~V~d~d~~~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 67 ISVMDYDLLGSDDLIGETVIDLEDRFF 93 (124)
T ss_pred EEEEECCCCCCCceeEEEEEeeccccc
Confidence 999999985 68999999999987763
No 114
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.44 E-value=2.5e-13 Score=179.83 Aligned_cols=122 Identities=20% Similarity=0.409 Sum_probs=101.8
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCCC--
Q 001126 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA-- 422 (1149)
Q Consensus 345 lhGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~~-- 422 (1149)
+-|.|+|+|++|++|. .+ +|. +||||+|.+++....||||++++.||+|||+|.|.+.++.
T Consensus 1978 ~~G~L~V~V~~a~nl~-~~-~~~---------------sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~ 2040 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK-QS-MGN---------------TNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKG 2040 (2102)
T ss_pred CCcceEEEEeeccccc-cc-cCC---------------CCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCC
Confidence 4689999999999998 33 343 8999999999764459999999999999999999888765
Q ss_pred ceEEEEEEEccCCCCcceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEEEEEeec
Q 001126 423 AEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1149)
Q Consensus 423 ~~L~~~V~D~D~~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f~p 484 (1149)
..|+|+|||+|.++++.||.+.|++.++..+.....||+|.+ +|++.+..-.|+|.++|.+
T Consensus 2041 ~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L~~-~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2041 QKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLNP-ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CceEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeeecCc-ccccCCCcceEEEEEEecC
Confidence 679999999999999999999999999998889999999973 3332221124889888764
No 115
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.44 E-value=2.4e-13 Score=137.51 Aligned_cols=109 Identities=20% Similarity=0.302 Sum_probs=89.1
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC---CE--EEeeeeeecCCCCCeeceEEEEEccC
Q 001126 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA---GA--VVGRTFVISNSEDPVWQQHFYVPVAH 420 (1149)
Q Consensus 346 hGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~---g~--~~~rTkVi~nt~nPvWNE~F~f~v~~ 420 (1149)
.|+|.|+|++|+||+.++..+. +||||+|.+. +. ..+||++++++.||+|||+|.|.+..
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~---------------~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~ 78 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKA---------------PDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVAL 78 (138)
T ss_pred CCeEEEEEEEecCCCccccCCC---------------CCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCH
Confidence 4789999999999998887765 8999999993 22 23599999999999999999999875
Q ss_pred C---CceEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeEeeccCCCCCC
Q 001126 421 S---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1149)
Q Consensus 421 ~---~~~L~~~V~D~D~-~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~ 470 (1149)
. ...|.|+|+|++. .++++||++.|++...-. ...+.|+.++...+++.
T Consensus 79 ~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~~~~~~v 131 (138)
T cd08408 79 FQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGE-EEEEHWNEMKESKGQQV 131 (138)
T ss_pred HHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCCc-hHHHHHHHHHhCCCCEE
Confidence 3 3689999999986 568899999998874321 34578999987777654
No 116
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.43 E-value=7.6e-13 Score=130.51 Aligned_cols=100 Identities=23% Similarity=0.320 Sum_probs=82.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCeeceEEEEEccCC-
Q 001126 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1149)
Q Consensus 347 GtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~rTkVi~nt~nPvWNE~F~f~v~~~- 421 (1149)
++|.|+|++|++|+..+..+. +||||+|.+.. ...+||++++++.||+|||+|.|.....
T Consensus 15 ~~L~V~v~~a~~L~~~~~~~~---------------~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~ 79 (123)
T cd04035 15 SALHCTIIRAKGLKAMDANGL---------------SDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEE 79 (123)
T ss_pred CEEEEEEEEeeCCCCCCCCCC---------------CCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHH
Confidence 579999999999998887665 89999999832 2346999999999999999999963222
Q ss_pred ---CceEEEEEEEccCCCCcceeeEEEeceeeccCCceeeeEe
Q 001126 422 ---AAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYP 461 (1149)
Q Consensus 422 ---~~~L~~~V~D~D~~~ddfIG~v~Ipl~~L~~G~~~~~W~p 461 (1149)
...|.|+|||++..++++||++.+++++|..+...+.|+.
T Consensus 80 ~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 80 DIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred HhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeecc
Confidence 3589999999987788899999999999997765555543
No 117
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.41 E-value=1.7e-12 Score=126.99 Aligned_cols=79 Identities=16% Similarity=0.363 Sum_probs=66.8
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCeeceEEEEEccCCCce
Q 001126 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHSAAE 424 (1149)
Q Consensus 349 L~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~rTkVi~nt~nPvWNE~F~f~v~~~~~~ 424 (1149)
|.|+|.+|+||+ +. +||||+|.++. ...+||+++++|.||+|||+|.|.+.. ...
T Consensus 1 L~V~V~~A~~L~-----~~---------------sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~ 59 (118)
T cd08686 1 LNVIVHSAQGFK-----QS---------------ANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQT 59 (118)
T ss_pred CEEEEEeCCCCC-----CC---------------CCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCE
Confidence 689999999996 33 79999999964 345799999999999999999999974 679
Q ss_pred EEEEEEEcc-------C-CCCcceeeEEEece
Q 001126 425 VHFFVKDSD-------V-VGSELIGTVAIPVE 448 (1149)
Q Consensus 425 L~~~V~D~D-------~-~~ddfIG~v~Ipl~ 448 (1149)
|+|+|||++ . ..|++||.+.|.++
T Consensus 60 L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 60 LRILCYEKCYSKVKLDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred EEEEEEEcccccccccccCcccEEEEEEEEEC
Confidence 999999983 3 45889988888774
No 118
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=1.5e-12 Score=153.78 Aligned_cols=126 Identities=24% Similarity=0.264 Sum_probs=104.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE--EEeeeeeecCCCCCeeceEEEEEccCC---
Q 001126 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA--VVGRTFVISNSEDPVWQQHFYVPVAHS--- 421 (1149)
Q Consensus 347 GtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~--~~~rTkVi~nt~nPvWNE~F~f~v~~~--- 421 (1149)
..|.|+|++|++|+.+|..|. +||||++.+-.. ...+|+|.++++||+|||+|.|.|...
T Consensus 167 ~~L~V~V~qa~~Lp~~d~~g~---------------sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~ 231 (421)
T KOG1028|consen 167 NLLTVRVIQAHDLPAKDRGGT---------------SDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELS 231 (421)
T ss_pred CEEEEEEEEecCCCcccCCCC---------------CCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhc
Confidence 469999999999999994443 899999999542 334999999999999999999997654
Q ss_pred CceEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEEEEEeecccc
Q 001126 422 AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMER 487 (1149)
Q Consensus 422 ~~~L~~~V~D~D~-~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f~p~~~ 487 (1149)
...|.|+|+|.|+ .++++||++.+++..+........|.+|........+..|+|.+.|+|.|...
T Consensus 232 ~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g 298 (421)
T KOG1028|consen 232 NRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAG 298 (421)
T ss_pred cCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCC
Confidence 4789999999999 66999999999999888776678899997653333333479999999999854
No 119
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.35 E-value=9.5e-12 Score=129.54 Aligned_cols=130 Identities=23% Similarity=0.295 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCch
Q 001126 840 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAA 919 (1149)
Q Consensus 840 ~sI~~ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~aira~rgv~V~IVlP~~Peg~p~~~s 919 (1149)
..+.++++++|++|++.|+|+++||.+.. .....++..+|.+|. ++|++|+||+........
T Consensus 20 ~~~~~~i~~~I~~A~~~I~i~~~~~~~~~------------~~~~~~l~~~L~~a~--~rGv~V~il~~~~~~~~~---- 81 (176)
T cd00138 20 RSDLDALLEAISNAKKSIYIASFYLSPLI------------TEYGPVILDALLAAA--RRGVKVRILVDEWSNTDL---- 81 (176)
T ss_pred chHHHHHHHHHHhhheEEEEEEeEecccc------------cccchHHHHHHHHHH--HCCCEEEEEEcccccCCc----
Confidence 47899999999999999999999998631 000236777888775 469999999988653210
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHc---CCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCccc
Q 001126 920 TQRILFWQHKTMQMMYETIYKALVEV---GLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFM 996 (1149)
Q Consensus 920 ~~~il~~~~rTm~~~~~si~~~L~~~---Gv~~~~~P~~Yl~f~~Lr~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 996 (1149)
.....+...|.+. |++++..+ ... ...
T Consensus 82 -------------~~~~~~~~~l~~~~~~~i~~~~~~----------~~~---------------------------~~~ 111 (176)
T cd00138 82 -------------KISSAYLDSLRALLDIGVRVFLIR----------TDK---------------------------TYG 111 (176)
T ss_pred -------------hHHHHHHHHHHHhhcCceEEEEEc----------CCc---------------------------ccc
Confidence 0011344556554 56554211 000 012
Q ss_pred ceeeeEEEEEeCeEEEEcccccccCCCCCCCCcceEEEEeCcc
Q 001126 997 IYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPE 1039 (1149)
Q Consensus 997 iYVHSKlmIVDD~~viIGSANiN~RSm~G~~DsEiav~i~dp~ 1039 (1149)
..+|+|+||||++.++|||+|++.+++. .|.|+++.+.+++
T Consensus 112 ~~~H~K~~iiD~~~~~vGS~N~~~~~~~--~~~e~~~~~~~~~ 152 (176)
T cd00138 112 GVLHTKLVIVDDETAYIGSANLDGRSLT--LNSEVGVVIYDPA 152 (176)
T ss_pred cceeeeEEEEcCCEEEEECCcCChhhhh--hhcceEEEEeChH
Confidence 4789999999999999999999999998 7999999999986
No 120
>PRK13912 nuclease NucT; Provisional
Probab=99.32 E-value=3.3e-11 Score=126.90 Aligned_cols=140 Identities=20% Similarity=0.271 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHHHHhcCCeEEEEEecCCCccccccccccccccc
Q 001126 545 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQT 624 (1149)
Q Consensus 545 ~~f~al~eAI~~Ak~sI~I~~W~~~p~i~L~r~~~~~~g~rL~dlL~~kA~rGVkVrILVwD~~gs~~~~g~k~~g~m~~ 624 (1149)
+++..++++|++|+++|+|+.|.+ .+ ..|.++|.+|++|||+|+||+ |...+...
T Consensus 33 ~~~~~l~~~I~~Ak~sI~i~~Y~~-------~~------~~i~~aL~~Aa~RGV~VrIll-d~~~~~~~----------- 87 (177)
T PRK13912 33 DALNKLVSLISNARSSIKIAIYSF-------TH------KDIAKALKSAAKRGVKISIIY-DYESNHNN----------- 87 (177)
T ss_pred HHHHHHHHHHHhcccEEEEEEEEE-------ch------HHHHHHHHHHHHCCCEEEEEE-eCccccCc-----------
Confidence 568899999999999999998854 22 579999999999999999996 76543211
Q ss_pred ccHHHHHHh-ccCCcEEEEccCccccccccccccccccccccccceEEecCCCCCCCccEEEEEcccccCCCCCCCCCCC
Q 001126 625 HDEETRRVF-KHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHP 703 (1149)
Q Consensus 625 ~~~~t~~~l-~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~rHHQKiVVVD~~~~~~~r~~vAFVGGiNL~dgRwDt~~H~ 703 (1149)
......++ +..++++.......... ......+|.|++|||++ ++++|+.|++...+..
T Consensus 88 -~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~H~K~~viD~~--------~~~iGS~N~t~~s~~~---- 146 (177)
T PRK13912 88 -DQSTIGYLDKYPNIKVCLLKGLKAKN--------GKYYGIMHQKVAIIDDK--------IVVLGSANWSKNAFEN---- 146 (177)
T ss_pred -chhHHHHHHhCCCceEEEecCccccC--------cccccccceeEEEEcCC--------EEEEeCCCCChhHhcc----
Confidence 01111122 23566666542211000 01124689999999996 9999999999864421
Q ss_pred ccccccccCCCCCCCCccccCCCCCCCCCCeeeeeeEEcCH-HHHHHHHHHHHHHHhh
Q 001126 704 LFRTLQTLHKDDYHNPTFTQGNTTGCPREPWHDLHSKIDGP-AAYDVLTNFEERWRKA 760 (1149)
Q Consensus 704 l~~~~~~~~~~Dy~np~~~~~~~~~~pr~PWHDv~vrI~GP-aa~Dl~~~F~qrWn~~ 760 (1149)
-+++.+.++.| .+.++.+.|.+.|...
T Consensus 147 ------------------------------N~E~~lii~d~~~~~~~~~~F~~~~~~s 174 (177)
T PRK13912 147 ------------------------------NYEVLLITDDTETILKAKEYFQKMLGSC 174 (177)
T ss_pred ------------------------------CCceEEEECCHHHHHHHHHHHHHHHHhc
Confidence 13567778888 5799999999999864
No 121
>PRK13912 nuclease NucT; Provisional
Probab=99.30 E-value=2.4e-11 Score=128.01 Aligned_cols=128 Identities=21% Similarity=0.218 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCch
Q 001126 840 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAA 919 (1149)
Q Consensus 840 ~sI~~ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~aira~rgv~V~IVlP~~Peg~p~~~s 919 (1149)
..+...++++|++|++.|+|+. |++.+ .++..+|.+|. +|||+|+||++...... .
T Consensus 32 ~~~~~~l~~~I~~Ak~sI~i~~-Y~~~~-----------------~~i~~aL~~Aa--~RGV~VrIlld~~~~~~----~ 87 (177)
T PRK13912 32 KDALNKLVSLISNARSSIKIAI-YSFTH-----------------KDIAKALKSAA--KRGVKISIIYDYESNHN----N 87 (177)
T ss_pred HHHHHHHHHHHHhcccEEEEEE-EEEch-----------------HHHHHHHHHHH--HCCCEEEEEEeCccccC----c
Confidence 3577889999999999999996 66543 35777787764 69999999998754210 0
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHH-cCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCcccce
Q 001126 920 TQRILFWQHKTMQMMYETIYKALVE-VGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIY 998 (1149)
Q Consensus 920 ~~~il~~~~rTm~~~~~si~~~L~~-~Gv~~~~~P~~Yl~f~~Lr~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iY 998 (1149)
... ....|.+ .+++.... ..+.. . . .....+
T Consensus 88 ~~~---------------~~~~l~~~~~~~~~~~-------~~~~~----~---------------------~-~~~~~~ 119 (177)
T PRK13912 88 DQS---------------TIGYLDKYPNIKVCLL-------KGLKA----K---------------------N-GKYYGI 119 (177)
T ss_pred chh---------------HHHHHHhCCCceEEEe-------cCccc----c---------------------C-cccccc
Confidence 000 0111211 13332210 00000 0 0 001236
Q ss_pred eeeEEEEEeCeEEEEcccccccCCCCCCCCcceEEEEeCcchh
Q 001126 999 VHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1041 (1149)
Q Consensus 999 VHSKlmIVDD~~viIGSANiN~RSm~G~~DsEiav~i~dp~~~ 1041 (1149)
+|+|+||||++++++||+||+.+|+. .|.|+++++.|++..
T Consensus 120 ~H~K~~viD~~~~~iGS~N~t~~s~~--~N~E~~lii~d~~~~ 160 (177)
T PRK13912 120 MHQKVAIIDDKIVVLGSANWSKNAFE--NNYEVLLITDDTETI 160 (177)
T ss_pred cceeEEEEcCCEEEEeCCCCChhHhc--cCCceEEEECCHHHH
Confidence 89999999999999999999999998 899999999998753
No 122
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.30 E-value=1.8e-11 Score=143.09 Aligned_cols=141 Identities=18% Similarity=0.228 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhccceEEEEeeccceeeEEeCCC-CchHHHHHHHHHHHH-hcCCeEEEEEecCCCcccccccccccccc
Q 001126 546 CWYDICNAISQAQRLIYITGWSVWHKVKLVRDAS-PALDCTLGELLRSKS-QEGVRVLLLVWDDPTSRSILGYKMDGVMQ 623 (1149)
Q Consensus 546 ~f~al~eAI~~Ak~sI~I~~W~~~p~i~L~r~~~-~~~g~rL~dlL~~kA-~rGVkVrILVwD~~gs~~~~g~k~~g~m~ 623 (1149)
..++++++|.+||++|+|+.+.|.| ..+.+. ...+..|.++|++|| +|||+||||+ |..+....
T Consensus 217 ~~~~ll~~I~~Ak~~I~I~t~yf~P---~~~~d~~~~~~~~i~~AL~~AAa~RGV~VRILv-~~~~~~~~---------- 282 (369)
T PHA03003 217 DADVVLHKIKSAKKSIDLELLSLVP---VIREDDKTTYWPDIYNALIRAAINRGVKVRLLV-GSWKKNDV---------- 282 (369)
T ss_pred CHHHHHHHHHHHhhEEEEEEecccc---EEeeCCCCccHHHHHHHHHHHHHcCCCEEEEEE-ecCCcCCc----------
Confidence 3589999999999999999997765 333332 224578999999885 9999999997 76432110
Q ss_pred cccHHHHHHhccCCcE----EEEccCccccccccccccccccccccccceEEecCCCCCCCccEEEEEcccccCCCCCCC
Q 001126 624 THDEETRRVFKHSSVK----VLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDN 699 (1149)
Q Consensus 624 ~~~~~t~~~l~~~gV~----v~l~p~~~~~~~~~~~~~~~~~~~rHHQKiVVVD~~~~~~~r~~vAFVGGiNL~dgRwDt 699 (1149)
......+.|...|++ +..+ .+.+|+|++|||++ +|||||.|+...++..
T Consensus 283 -~~~~~~~~L~~~G~~~~i~vri~------------------~~~~H~K~~VVD~~--------~a~iGS~N~d~~s~~~ 335 (369)
T PHA03003 283 -YSMASVKSLQALCVGNDLSVKVF------------------RIPNNTKLLIVDDE--------FAHITSANFDGTHYLH 335 (369)
T ss_pred -hhhhHHHHHHHcCCCCCceEeee------------------cCCCCceEEEEcCC--------EEEEeccccCchhhcc
Confidence 011234456666643 2221 12279999999997 9999999997754421
Q ss_pred CCCCccccccccCCCCCCCCccccCCCCCCCCCCeeeeeeEEcCHHHHHHHHHHHHHHHhh
Q 001126 700 PHHPLFRTLQTLHKDDYHNPTFTQGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKA 760 (1149)
Q Consensus 700 ~~H~l~~~~~~~~~~Dy~np~~~~~~~~~~pr~PWHDv~vrI~GPaa~Dl~~~F~qrWn~~ 760 (1149)
..|.++ ..++|++|.++...|.++|+..
T Consensus 336 --------------------------------~~e~~~-~~~~~~~a~~l~~~F~~dW~~~ 363 (369)
T PHA03003 336 --------------------------------HAFVSF-NTIDKELVKELSAIFERDWTSS 363 (369)
T ss_pred --------------------------------CCCeEE-ecCChhHHHHHHHHHHHHhCCc
Confidence 122332 2468999999999999999864
No 123
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.29 E-value=1.5e-11 Score=118.79 Aligned_cols=87 Identities=31% Similarity=0.531 Sum_probs=73.5
Q ss_pred EEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE-----EEeeeeeecCCCCCeeceEEEEEccCC----
Q 001126 351 IWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA-----VVGRTFVISNSEDPVWQQHFYVPVAHS---- 421 (1149)
Q Consensus 351 VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~-----~~~rTkVi~nt~nPvWNE~F~f~v~~~---- 421 (1149)
+-+++|++|+.+|..+. +||||+|.+.+. ..+||++++++.||+|| +|.|++...
T Consensus 4 ~~~i~a~~L~~~d~~~~---------------~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~ 67 (110)
T cd04047 4 ELQFSGKKLDKKDFFGK---------------SDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGD 67 (110)
T ss_pred EEEEEeCCCCCCCCCCC---------------CCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCC
Confidence 45679999999998876 899999998543 35699999999999999 799886432
Q ss_pred -CceEEEEEEEccCC-CCcceeeEEEeceeeccC
Q 001126 422 -AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSG 453 (1149)
Q Consensus 422 -~~~L~~~V~D~D~~-~ddfIG~v~Ipl~~L~~G 453 (1149)
...|.|+|||+|.. ++++||++.+++++|..+
T Consensus 68 ~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 68 YDRPIKIEVYDYDSSGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred cCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHhcC
Confidence 47899999999986 588999999999999844
No 124
>PRK12452 cardiolipin synthetase; Reviewed
Probab=99.26 E-value=2.3e-11 Score=147.44 Aligned_cols=153 Identities=16% Similarity=0.204 Sum_probs=113.3
Q ss_pred CCeeEecccccCCCCCCCcccccCCCccchhhHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHHH
Q 001126 514 GGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSK 593 (1149)
Q Consensus 514 Gn~V~ly~dg~~~~~~~~~i~l~~g~~y~~~~~f~al~eAI~~Ak~sI~I~~W~~~p~i~L~r~~~~~~g~rL~dlL~~k 593 (1149)
.+.++++.+|.. ......+..++++|.+||++|+|++..| +.+ ..+.++|+.|
T Consensus 328 ~~~~q~~~sgp~---------------~~~~~i~~~~l~~I~~A~~~I~I~tpYf------~pd------~~l~~aL~~A 380 (509)
T PRK12452 328 EGAVQIVASGPS---------------SDDKSIRNTLLAVMGSAKKSIWIATPYF------IPD------QETLTLLRLS 380 (509)
T ss_pred CeEEEEEeCCCC---------------chhHHHHHHHHHHHHHhhhEEEEECCcc------CCC------HHHHHHHHHH
Confidence 347888888751 1123678999999999999999998533 222 5789999999
Q ss_pred HhcCCeEEEEEecCCCcccccccccccccccccHHHHHHhccCCcEEEEccCccccccccccccccccccccccceEEec
Q 001126 594 SQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVD 673 (1149)
Q Consensus 594 A~rGVkVrILVwD~~gs~~~~g~k~~g~m~~~~~~t~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~rHHQKiVVVD 673 (1149)
|+|||+||||+ +....... .........+.|.+.||++..+.+ ...|.|++|||
T Consensus 381 a~rGV~Vrii~-p~~~D~~~--------~~~a~~~~~~~L~~aGv~I~~y~~-----------------~~lHaK~~ivD 434 (509)
T PRK12452 381 AISGIDVRILY-PGKSDSII--------SDQASQSYFTPLLKAGASIYSYKD-----------------GFMHAKIVLVD 434 (509)
T ss_pred HHcCCEEEEEc-CCCCChHH--------HHHHHHHHHHHHHHcCCEEEEecC-----------------CCeeeeEEEEC
Confidence 99999999997 54321100 001112334556678999987643 13799999999
Q ss_pred CCCCCCCccEEEEEcccccCCCCCCCCCCCccccccccCCCCCCCCccccCCCCCCCCCCeeeeeeEEcCHHHHHHHHHH
Q 001126 674 ADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTQGNTTGCPREPWHDLHSKIDGPAAYDVLTNF 753 (1149)
Q Consensus 674 ~~~~~~~r~~vAFVGGiNL~dgRwDt~~H~l~~~~~~~~~~Dy~np~~~~~~~~~~pr~PWHDv~vrI~GPaa~Dl~~~F 753 (1149)
++ +|+||+.|+....+ +..|.+..+..+++.|.++...|
T Consensus 435 ~~--------~a~vGS~Nld~RS~---------------------------------~~n~E~~~~i~~~~~~~~l~~~f 473 (509)
T PRK12452 435 DK--------IATIGTANMDVRSF---------------------------------ELNYEIISVLYESETVHDIKRDF 473 (509)
T ss_pred CC--------EEEEeCcccCHhHh---------------------------------hhhhhccEEEECHHHHHHHHHHH
Confidence 97 99999999977433 12567888999999999999999
Q ss_pred HHHHHhh
Q 001126 754 EERWRKA 760 (1149)
Q Consensus 754 ~qrWn~~ 760 (1149)
.++|...
T Consensus 474 ~~d~~~s 480 (509)
T PRK12452 474 EDDFKHS 480 (509)
T ss_pred HHHHHhC
Confidence 9999975
No 125
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1e-11 Score=144.09 Aligned_cols=125 Identities=26% Similarity=0.399 Sum_probs=100.7
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCCCceEEE
Q 001126 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 427 (1149)
Q Consensus 348 tL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~~~~L~~ 427 (1149)
.++++|++|+||...|..|+ +||||++.+++.+. ||++|...+||+|||.|+|.|.+....+.+
T Consensus 296 kitltvlcaqgl~akdktg~---------------sdpyvt~qv~ktkr-rtrti~~~lnpvw~ekfhfechnstdrikv 359 (1283)
T KOG1011|consen 296 KITLTVLCAQGLIAKDKTGK---------------SDPYVTAQVGKTKR-RTRTIHQELNPVWNEKFHFECHNSTDRIKV 359 (1283)
T ss_pred eeEEeeeecccceecccCCC---------------CCCcEEEeecccch-hhHhhhhccchhhhhheeeeecCCCceeEE
Confidence 68999999999999998887 99999999999885 999999999999999999999999999999
Q ss_pred EEEEccC------------CCCcceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEEEEE--eecccccccc
Q 001126 428 FVKDSDV------------VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQ--YTPMERLSFY 491 (1149)
Q Consensus 428 ~V~D~D~------------~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~--f~p~~~~~~~ 491 (1149)
.|||.|. .+|||+|++.|.+..|. | .++.||.|..+..|.. -.|.|+|.|. ..-.++...|
T Consensus 360 rvwded~dlksklrqkl~resddflgqtvievrtls-g-emdvwynlekrtdksa-vsgairlhisveikgeekvapy 434 (1283)
T KOG1011|consen 360 RVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLS-G-EMDVWYNLEKRTDKSA-VSGAIRLHISVEIKGEEKVAPY 434 (1283)
T ss_pred EEecCcccHHHHHHHHhhhcccccccceeEEEEecc-c-chhhhcchhhccchhh-ccceEEEEEEEEEcCccccccc
Confidence 9999875 24899999999998776 4 4689999965544432 2345555544 4444444333
No 126
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.25 E-value=1.2e-11 Score=146.65 Aligned_cols=125 Identities=24% Similarity=0.298 Sum_probs=111.2
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCCCceEEE
Q 001126 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 427 (1149)
Q Consensus 348 tL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~~~~L~~ 427 (1149)
.|+|+|.+|+||+..+..|. .||||+|.++.+.+.||.++.+++.|.|.|+|+|++...-..|.|
T Consensus 6 sl~vki~E~knL~~~~~~g~---------------~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~f 70 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGM---------------RDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSF 70 (800)
T ss_pred ceeEEEeecccCCCCCCCCC---------------cCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEE
Confidence 48999999999999988776 899999999999999999999999999999999999877889999
Q ss_pred EEEEccCCCCcceeeEEEeceeeccCCceeeeEeecc--CCCCCCCCCceeEEEEEeeccccccc
Q 001126 428 FVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLN--GSGKPCKPGATLTLSIQYTPMERLSF 490 (1149)
Q Consensus 428 ~V~D~D~~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~--~~Gk~~~~~g~L~L~L~f~p~~~~~~ 490 (1149)
-|||.|...|+.||.+.|.-++|..-...+.||.|.. ++.+ -+|+|+|++++.+......
T Consensus 71 Yv~D~d~~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~dsE---VQG~v~l~l~~~e~~~~~~ 132 (800)
T KOG2059|consen 71 YVWDRDLKRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDSE---VQGKVHLELALTEAIQSSG 132 (800)
T ss_pred EEeccccccccccceeeeeHHHHhhCCCCccceeccccCCChh---hceeEEEEEEeccccCCCc
Confidence 9999998889999999999999987677899999953 4444 3479999999998877543
No 127
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.24 E-value=1.6e-11 Score=111.14 Aligned_cols=81 Identities=41% Similarity=0.642 Sum_probs=69.7
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE--EEeeeeeecCCCCCeeceEEEEEccCC-CceE
Q 001126 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA--VVGRTFVISNSEDPVWQQHFYVPVAHS-AAEV 425 (1149)
Q Consensus 349 L~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~--~~~rTkVi~nt~nPvWNE~F~f~v~~~-~~~L 425 (1149)
|+|+|++|++|+..+..+. +||||+|.+.+. ...+|+++.++.+|.|||+|.|.+... ...|
T Consensus 1 L~v~I~~a~~L~~~~~~~~---------------~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l 65 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGK---------------PDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSL 65 (85)
T ss_dssp EEEEEEEEESSSSSSTTSS---------------BEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEE
T ss_pred CEEEEEEEECCCCcccCCc---------------ccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccce
Confidence 7999999999998776555 899999999873 226999999999999999999996544 4679
Q ss_pred EEEEEEccCCC-CcceeeEE
Q 001126 426 HFFVKDSDVVG-SELIGTVA 444 (1149)
Q Consensus 426 ~~~V~D~D~~~-ddfIG~v~ 444 (1149)
.|+|||++..+ +++||+++
T Consensus 66 ~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 66 SFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp EEEEEEETSSSSEEEEEEEE
T ss_pred EEEEEECCCCCCCCEEEEEC
Confidence 99999999976 88999985
No 128
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.17 E-value=1.2e-10 Score=114.40 Aligned_cols=114 Identities=25% Similarity=0.377 Sum_probs=75.2
Q ss_pred HHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCchhHHHHH
Q 001126 846 YVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILF 925 (1149)
Q Consensus 846 yl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~aira~rgv~V~IVlP~~Peg~p~~~s~~~il~ 925 (1149)
++++|++|++.|+|..+||... .+..+|+.+ +.+|++|+|++...... .....
T Consensus 1 l~~~i~~A~~~i~i~~~~~~~~------------------~i~~~l~~~--~~~gv~v~ii~~~~~~~-------~~~~~ 53 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYITDP------------------DIIKALLDA--AKRGVKVRIIVDSNQDD-------SEAIN 53 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS-SC------------------HHHHHHHHH--HHTT-EEEEEEECGGGH-------HCCCS
T ss_pred CHHHHhccCCEEEEEEEecCcH------------------HHHHHHHHH--HHCCCeEEEEECCCccc-------cchhh
Confidence 4689999999999999999432 355556553 46899999999873210 00000
Q ss_pred HHHhhhhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCcccceeeeEEEE
Q 001126 926 WQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMI 1005 (1149)
Q Consensus 926 ~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~Lr~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iYVHSKlmI 1005 (1149)
......+.+.+...|++++ ..+|+|++|
T Consensus 54 ------~~~~~~~~~~~~~~~i~v~----------------------------------------------~~~H~K~~i 81 (126)
T PF13091_consen 54 ------LASLKELRELLKNAGIEVR----------------------------------------------NRLHAKFYI 81 (126)
T ss_dssp ------HHHHHHHHHHHHHTTHCEE----------------------------------------------S-B--EEEE
T ss_pred ------hHHHHHHHhhhccceEEEe----------------------------------------------cCCCcceEE
Confidence 0011223444466676543 167999999
Q ss_pred EeCeEEEEcccccccCCCCCCCCcceEEEEeCcch
Q 001126 1006 VDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEY 1040 (1149)
Q Consensus 1006 VDD~~viIGSANiN~RSm~G~~DsEiav~i~dp~~ 1040 (1149)
+||++++|||+||+.+||. +|.|+++.+.+++.
T Consensus 82 ~d~~~~iiGS~N~t~~~~~--~n~E~~~~~~~~~~ 114 (126)
T PF13091_consen 82 IDDKVAIIGSANLTSSSFR--RNYELGVIIDDPEL 114 (126)
T ss_dssp ETTTEEEEES--CSCCCSC--TSEEEEEEEECHHH
T ss_pred ecCccEEEcCCCCCcchhc--CCcceEEEEECHHH
Confidence 9999999999999999997 89999999999853
No 129
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=99.16 E-value=1.1e-08 Score=117.27 Aligned_cols=341 Identities=18% Similarity=0.157 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHhccceEEEEeeccce-eeEE-eCCCCchHHHHHHHHHHHHhcCCeEEEEEecCCCcccccccccccccc
Q 001126 546 CWYDICNAISQAQRLIYITGWSVWHK-VKLV-RDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQ 623 (1149)
Q Consensus 546 ~f~al~eAI~~Ak~sI~I~~W~~~p~-i~L~-r~~~~~~g~rL~dlL~~kA~rGVkVrILVwD~~gs~~~~g~k~~g~m~ 623 (1149)
++++.++.|++|+++|+|+.|--+=. ..+- .+.....|..+..+|.+++.+||.|||..--..+.. .
T Consensus 73 T~eaW~~Ll~sA~~eldIas~ywsL~~~d~~~~dsSt~~G~~vy~~L~~~~~~gIsiriA~~~p~~~~--~--------- 141 (456)
T KOG3603|consen 73 TKEAWLELLSTAQEELDIASFYWSLTGKDTGVVDSSTQYGEQVYNTLLALAKSGVKIRIAQSYPSGGP--P--------- 141 (456)
T ss_pred HHHHHHHHhhccceEEEEEEEeeccccceeccCCCcchHHHHHHHHHHHhccCCeEEEEEeecCCCCC--C---------
Confidence 46889999999999999987522110 1111 111234689999999999999999999872222111 1
Q ss_pred cccHHHHHHhccCC-cEEEEccCccccccccccccccccccccccceEEecCCCCCCCccEEEEEcccccCCCCCCCCCC
Q 001126 624 THDEETRRVFKHSS-VKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHH 702 (1149)
Q Consensus 624 ~~~~~t~~~l~~~g-V~v~l~p~~~~~~~~~~~~~~~~~~~rHHQKiVVVD~~~~~~~r~~vAFVGGiNL~dgRwDt~~H 702 (1149)
......|...| ++++-.... .|. + -.-.|-|+.|||++ --|+||.|+.+. =-|+
T Consensus 142 ---~~d~~~Le~~Gaa~vr~id~~-----~l~-----g-~GvlHtKf~vvD~k--------hfylGSaNfDWr-SlTq-- 196 (456)
T KOG3603|consen 142 ---NADLQVLESLGLAQVRSIDMN-----RLT-----G-GGVLHTKFWVVDIK--------HFYLGSANFDWR-SLTQ-- 196 (456)
T ss_pred ---cccHHHHHhCCCceEEeeccc-----ccc-----c-CceEEEEEEEEecc--------eEEEeccccchh-hccc--
Confidence 11122344445 666543211 111 0 23479999999996 899999999884 2111
Q ss_pred CccccccccCCCCCCCCccccCCCCCCCCCCeeeeeeEE--cCHHHHHHHHHHHHHHHhhcCCCCccccCCchhhhhhhc
Q 001126 703 PLFRTLQTLHKDDYHNPTFTQGNTTGCPREPWHDLHSKI--DGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIE 780 (1149)
Q Consensus 703 ~l~~~~~~~~~~Dy~np~~~~~~~~~~pr~PWHDv~vrI--~GPaa~Dl~~~F~qrWn~~t~~~~~~~l~~~~~~l~~~~ 780 (1149)
-..+++.+ .--.|.||.+.|.+.|........+.+.....-..
T Consensus 197 -------------------------------vkElGv~v~NCpclakDL~kiFe~yW~lg~~~s~~p~~wp~~~st---- 241 (456)
T KOG3603|consen 197 -------------------------------VKELGVVVRNCPCLAKDLKKIFERYWYLGNAKSLIPKKWPNCYST---- 241 (456)
T ss_pred -------------------------------eeEeeeEEecChhHHHHHHHHHHHHhcCCCCCccCCCCCcccccc----
Confidence 01223333 23479999999999999654332111110000000
Q ss_pred cCCCccCCCCCCCcccCCCCCcEEEEEeecCCCccccCCCChhhhcccccccCcccchhhHHHHHHHHHHHhhccEEEEE
Q 001126 781 RIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIE 860 (1149)
Q Consensus 781 ~~p~~~~~~~~p~~~~~~~~~~~vQvlRS~~~~s~~~~P~~p~~~~~~~l~~g~~~~~e~sI~~ayl~aI~~Ak~fIYIE 860 (1149)
+.. ...|..-..+.....+++..|-+ | ...+|+. -=.+|+++.|..|++||||.
T Consensus 242 --~~N---~~~p~~~~~dg~~~~~y~saSP~-------~---------~~~~grt-----~DL~ail~~i~~A~~fv~is 295 (456)
T KOG3603|consen 242 --HYN---KPLPMKIAVDGTPATPYISASPP-------P---------LNPSGRT-----WDLEAILNTIDEAQKFVYIS 295 (456)
T ss_pred --ccc---ccCcceeecCCCCcceEEccCCC-------C---------CCCCCCc-----hhHHHHHHHHHHHhhheeee
Confidence 000 00000000001111223322210 0 1123322 22578999999999999997
Q ss_pred -EeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCchhHHHHHHHHhhhhhHHHHHH
Q 001126 861 -NQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIY 939 (1149)
Q Consensus 861 -NQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~aira~rgv~V~IVlP~~Peg~p~~~s~~~il~~~~rTm~~~~~si~ 939 (1149)
.+||=+..+. +. .+-- +|=.+|-+| +-|||+|++++..|....+. .-++++ ++ ..+.
T Consensus 296 VMdY~Ps~~y~----k~---~~fw--~iDdaiR~a--a~RgV~vR~lvs~~~~~~~~---m~~~L~----SL----q~l~ 353 (456)
T KOG3603|consen 296 VMDYFPSTIYS----KN---HRFW--EIDDAIRRA--AVRGVKVRLLVSCWKHSEPS---MFRFLR----SL----QDLS 353 (456)
T ss_pred ehhccchheee----cC---cchh--hhhHHHHHH--hhcceEEEEEEeccCCCCch---HHHHHH----HH----HHhc
Confidence 4566443221 00 0110 222333333 24899999999998753221 111111 00 0111
Q ss_pred HHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCcccceeeeEEEEEeCeEEEEcccccc
Q 001126 940 KALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANIN 1019 (1149)
Q Consensus 940 ~~L~~~Gv~~~~~P~~Yl~f~~Lr~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iYVHSKlmIVDD~~viIGSANiN 1019 (1149)
..+....|++++ |-.-.-. ....| +.-..|+|.||-++ .++||++|+.
T Consensus 354 ~~~~~~~iqvk~--------f~VP~~~--------------~~~ip---------~~Rv~HnKymVTe~-aayIGTSNws 401 (456)
T KOG3603|consen 354 DPLENGSIQVKF--------FIVPQTN--------------IEKIP---------FARVNHNKYMVTES-AAYIGTSNWS 401 (456)
T ss_pred CccccCceEEEE--------EEeCCCc--------------cccCc---------hhhhccceeEEeec-ceeeeccCCC
Confidence 112222233321 2110000 00011 12256999999987 7999999997
Q ss_pred cCCCCCCCCcceEEEEeCcc
Q 001126 1020 QRSMEGTRDTEIAMGAYQPE 1039 (1149)
Q Consensus 1020 ~RSm~G~~DsEiav~i~dp~ 1039 (1149)
--=+. --.-++|+|.+..
T Consensus 402 ~dYf~--~TaG~~ivv~q~~ 419 (456)
T KOG3603|consen 402 GDYFT--STAGTAIVVRQTP 419 (456)
T ss_pred cccee--ccCceEEEEecCC
Confidence 76665 2456788887653
No 130
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.15 E-value=2.3e-10 Score=104.93 Aligned_cols=99 Identities=33% Similarity=0.571 Sum_probs=83.3
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccC-CCceEEE
Q 001126 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAH-SAAEVHF 427 (1149)
Q Consensus 349 L~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~-~~~~L~~ 427 (1149)
|.|.|++|++|........ .||||++.+.+...++|+++.++.||.|||.|.|.+.. ....|.|
T Consensus 1 l~v~i~~~~~l~~~~~~~~---------------~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i 65 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGK---------------SDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTV 65 (102)
T ss_pred CEEEEEeeeCCCCcCCCCC---------------CCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEE
Confidence 5799999999986543333 89999999998555699999999999999999999987 5678999
Q ss_pred EEEEccCCC-CcceeeEEEeceeec-cCCceeeeEee
Q 001126 428 FVKDSDVVG-SELIGTVAIPVEQIY-SGGKVEGTYPV 462 (1149)
Q Consensus 428 ~V~D~D~~~-ddfIG~v~Ipl~~L~-~G~~~~~W~pL 462 (1149)
+|++.+..+ +.+||++.+++.++. .+.....|++|
T Consensus 66 ~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 66 EVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEecCCCCCCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 999988754 789999999999998 55666778765
No 131
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.13 E-value=2.9e-10 Score=105.07 Aligned_cols=93 Identities=39% Similarity=0.654 Sum_probs=79.7
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE--EEeeeeeecCCCCCeeceEEEEEccCC-Cce
Q 001126 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA--VVGRTFVISNSEDPVWQQHFYVPVAHS-AAE 424 (1149)
Q Consensus 348 tL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~--~~~rTkVi~nt~nPvWNE~F~f~v~~~-~~~ 424 (1149)
+|.|+|++|++|......+. .+|||++.+.+. ..++|+++.++.||.|||+|.|.+... ...
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~---------------~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~ 65 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGK---------------SDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAE 65 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCC---------------CCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCE
Confidence 37899999999986654333 799999999876 457999999999999999999999887 789
Q ss_pred EEEEEEEccCCC-CcceeeEEEeceeeccCCc
Q 001126 425 VHFFVKDSDVVG-SELIGTVAIPVEQIYSGGK 455 (1149)
Q Consensus 425 L~~~V~D~D~~~-ddfIG~v~Ipl~~L~~G~~ 455 (1149)
|.|+|+|++..+ +.+||.+.+++.++..+..
T Consensus 66 l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 66 LEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred EEEEEEecCCccCCceeEEEEEEHHHcccCcc
Confidence 999999988754 7899999999999886643
No 132
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.09 E-value=3.3e-10 Score=141.20 Aligned_cols=133 Identities=22% Similarity=0.384 Sum_probs=108.0
Q ss_pred eceEEEEEEEEeeCCCCCC--CCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCCC
Q 001126 345 LHGNLDIWIYSAKNLPNMD--MFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA 422 (1149)
Q Consensus 345 lhGtL~VtVieAk~L~~~D--~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~~ 422 (1149)
.-|+|.|+|.+|++|...| ..+. .|||+++...+...+||+|++++.||+|||+|++.+....
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~i~~~---------------vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~ 498 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDSTINGT---------------VDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFT 498 (1227)
T ss_pred eeEEEEEEEeeccCcccccccccCC---------------CCceEEEEeccccCCccceeeccCCccccceEEEEecccC
Confidence 3489999999999999777 2333 8999999999999999999999999999999999999888
Q ss_pred ceEEEEEEEccC-CCCcceeeEEEeceeeccCCc-eeeeEeeccCCCCCCCCCceeEEEEEeecccccccccCCCC
Q 001126 423 AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGK-VEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLSFYHRGVG 496 (1149)
Q Consensus 423 ~~L~~~V~D~D~-~~ddfIG~v~Ipl~~L~~G~~-~~~W~pL~~~~Gk~~~~~g~L~L~L~f~p~~~~~~~~~GV~ 496 (1149)
..|.|+|||.+. ..|+++|.+.|+|..|..... .+..+.++ .+.+.. |+|+..++|+|+..+..-..|+.
T Consensus 499 d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~-~~~k~v---GrL~yDl~ffp~~e~k~~~~~s~ 570 (1227)
T COG5038 499 DPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL-RNTKNV---GRLTYDLRFFPVIEDKKELKGSV 570 (1227)
T ss_pred CceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeee-ccCccc---eEEEEeeeeecccCCcccccccc
Confidence 999999999554 678999999999998885432 23356664 455543 69999999999877654444433
No 133
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.06 E-value=9.4e-10 Score=108.16 Aligned_cols=124 Identities=24% Similarity=0.420 Sum_probs=84.6
Q ss_pred HHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHHHHhcCCeEEEEEecCCCccccccccccccc-ccccHH
Q 001126 550 ICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVM-QTHDEE 628 (1149)
Q Consensus 550 l~eAI~~Ak~sI~I~~W~~~p~i~L~r~~~~~~g~rL~dlL~~kA~rGVkVrILVwD~~gs~~~~g~k~~g~m-~~~~~~ 628 (1149)
|.++|++|+++|+|+.+.|. + ..|.++|..++++||+|+|++ +...... +.+ ......
T Consensus 1 l~~~i~~A~~~i~i~~~~~~-------~------~~i~~~l~~~~~~gv~v~ii~-~~~~~~~-------~~~~~~~~~~ 59 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYIT-------D------PDIIKALLDAAKRGVKVRIIV-DSNQDDS-------EAINLASLKE 59 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS--------S------CHHHHHHHHHHHTT-EEEEEE-ECGGGHH-------CCCSHHHHHH
T ss_pred CHHHHhccCCEEEEEEEecC-------c------HHHHHHHHHHHHCCCeEEEEE-CCCcccc-------chhhhHHHHH
Confidence 57899999999999998661 1 367888888999999999997 4421100 000 011123
Q ss_pred HHHHhccCCcEEEEccCccccccccccccccccccccccceEEecCCCCCCCccEEEEEcccccCCCCCCCCCCCccccc
Q 001126 629 TRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTL 708 (1149)
Q Consensus 629 t~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~rHHQKiVVVD~~~~~~~r~~vAFVGGiNL~dgRwDt~~H~l~~~~ 708 (1149)
..+.++..|+++. .+.|.|++|||++ ++++|+.|++...|.
T Consensus 60 ~~~~~~~~~i~v~---------------------~~~H~K~~i~d~~--------~~iiGS~N~t~~~~~---------- 100 (126)
T PF13091_consen 60 LRELLKNAGIEVR---------------------NRLHAKFYIIDDK--------VAIIGSANLTSSSFR---------- 100 (126)
T ss_dssp HHHHHHHTTHCEE---------------------S-B--EEEEETTT--------EEEEES--CSCCCSC----------
T ss_pred HHhhhccceEEEe---------------------cCCCcceEEecCc--------cEEEcCCCCCcchhc----------
Confidence 4444567777765 1379999999986 999999999987551
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCeeeeeeEEcCHH-HHHHHHHHHHHH
Q 001126 709 QTLHKDDYHNPTFTQGNTTGCPREPWHDLHSKIDGPA-AYDVLTNFEERW 757 (1149)
Q Consensus 709 ~~~~~~Dy~np~~~~~~~~~~pr~PWHDv~vrI~GPa-a~Dl~~~F~qrW 757 (1149)
..+++.+.++++. +.++.+.|.+.|
T Consensus 101 ------------------------~n~E~~~~~~~~~~~~~~~~~F~~~W 126 (126)
T PF13091_consen 101 ------------------------RNYELGVIIDDPELVKELIREFDQMW 126 (126)
T ss_dssp ------------------------TSEEEEEEEECHHHHHHHHHHTHH-H
T ss_pred ------------------------CCcceEEEEECHHHHHHHHHHHhccC
Confidence 2368999999995 999999999989
No 134
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.06 E-value=3.9e-10 Score=140.59 Aligned_cols=128 Identities=26% Similarity=0.413 Sum_probs=103.5
Q ss_pred cceeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEcc
Q 001126 340 LKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVA 419 (1149)
Q Consensus 340 ~~~~LlhGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~ 419 (1149)
-.++--.|.|+|.+..|.||++.|.+|. +||||++.+.++.+.||+++++|+||+|||+|.++|.
T Consensus 1033 ~emv~nsG~l~I~~~~~~nl~~~d~ng~---------------sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~ 1097 (1227)
T COG5038 1033 VEMVENSGYLTIMLRSGENLPSSDENGY---------------SDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVL 1097 (1227)
T ss_pred ceeecccCcEEEEEeccCCCcccccCCC---------------CCceEEEEecceecccccchhccCCCCccccceEeee
Confidence 3445558999999999999999999987 8999999999998889999999999999999999997
Q ss_pred CC-CceEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEEEEEeec
Q 001126 420 HS-AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1149)
Q Consensus 420 ~~-~~~L~~~V~D~D~-~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f~p 484 (1149)
.. ...|+|.|+|||. .+++.||.+.|+|+.|..|......++|- .+. .....|.+++...|.+
T Consensus 1098 ~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~ld-gk~-~~~~~g~~~~~~~~r~ 1162 (1227)
T COG5038 1098 NRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLD-GKT-FIVLDGTLHPGFNFRS 1162 (1227)
T ss_pred ccccceEEEEEeecccCCCccccccccccHhhcCcCCccceeeecc-Ccc-eEecccEeecceecch
Confidence 54 5789999999998 56899999999999999887665556663 222 1223345555555444
No 135
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=9e-10 Score=130.51 Aligned_cols=109 Identities=28% Similarity=0.455 Sum_probs=89.9
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCeeceEEEEEccCC
Q 001126 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1149)
Q Consensus 346 hGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~rTkVi~nt~nPvWNE~F~f~v~~~ 421 (1149)
+|.|+|.|++|++|+.+|..+. +||||++.+-. ...+||.+++++.||+|||+|.|.|...
T Consensus 297 ~g~ltv~v~kar~L~~~~~~~~---------------~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~ 361 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSMDVGGL---------------SDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPE 361 (421)
T ss_pred CCeEEEEEEEecCCCcccCCCC---------------CCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHH
Confidence 5899999999999999988776 89999999832 2335999999999999999999987633
Q ss_pred ---CceEEEEEEEccCCC-CcceeeEEEeceeeccCCceeeeEeeccCCCCCCC
Q 001126 422 ---AAEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCK 471 (1149)
Q Consensus 422 ---~~~L~~~V~D~D~~~-ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~ 471 (1149)
...|.|+|||+|..+ +++||.+.+.... .|.....|.++++..+++..
T Consensus 362 ~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~p~~pv~ 413 (421)
T KOG1028|consen 362 QLAEVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEMLNSPRKPVA 413 (421)
T ss_pred HhheeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHHhCccCcee
Confidence 257899999999855 7799998887765 55557789999887777654
No 136
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.95 E-value=9.1e-11 Score=138.55 Aligned_cols=149 Identities=21% Similarity=0.332 Sum_probs=115.9
Q ss_pred CcccCCCCCCCCCcccccCCCCCcceeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC----
Q 001126 317 LVYAHSDSFNGQNMQIVPSTKGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA---- 392 (1149)
Q Consensus 317 ~p~~~~~~~~~~g~q~Va~q~~~~~~~LlhGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~---- 392 (1149)
+.|.-...+|..++..|.- -...++. |.|.+.+|+||-+.|.+|. +|||+++.+-
T Consensus 90 ~~fg~~~~eh~~~~e~v~~-~k~P~~~-----l~is~~~ak~l~akd~ngf---------------SdP~~m~g~~p~~~ 148 (1103)
T KOG1328|consen 90 NAFGGDAAEHNALMEKVKQ-NKPPSVL-----LNISLLEAKDLIAKDVNGF---------------SDPFAMMGVVPGTR 148 (1103)
T ss_pred HHhCCCHhHhhhccccccC-CCCCcHH-----HHHHHHHhcCccccCCCCC---------------CChhhhhccccccc
Confidence 3455555778878888863 2222222 7899999999999999987 8999999881
Q ss_pred ----------------------C----EEEeeeeeecCCCCCeeceEEEEEccCCC-ceEEEEEEEccCC----------
Q 001126 393 ----------------------G----AVVGRTFVISNSEDPVWQQHFYVPVAHSA-AEVHFFVKDSDVV---------- 435 (1149)
Q Consensus 393 ----------------------g----~~~~rTkVi~nt~nPvWNE~F~f~v~~~~-~~L~~~V~D~D~~---------- 435 (1149)
| +-++-|.|+++|+||+|||+|.|.+.+-. ..+++.+||+|..
T Consensus 149 ~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~L 228 (1103)
T KOG1328|consen 149 KENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSL 228 (1103)
T ss_pred cccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHH
Confidence 1 11346889999999999999999998764 7899999998741
Q ss_pred ---------------------------CCcceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEEEEEeeccccc
Q 001126 436 ---------------------------GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERL 488 (1149)
Q Consensus 436 ---------------------------~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f~p~~~~ 488 (1149)
.|||+|++.|||.+|... ..+.||.|..++.+. +-.|.++|.|+.+..+..
T Consensus 229 NeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~~-Gld~WFkLepRS~~S-~VqG~~~LklwLsT~e~~ 306 (1103)
T KOG1328|consen 229 NEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPPD-GLDQWFKLEPRSDKS-KVQGQVKLKLWLSTKEEG 306 (1103)
T ss_pred hhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCcc-hHHHHhccCcccccc-cccceEEEEEEEeeeccc
Confidence 178999999999999854 468999998776664 456799999998876554
No 137
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=98.91 E-value=6.7e-09 Score=125.66 Aligned_cols=152 Identities=20% Similarity=0.192 Sum_probs=107.2
Q ss_pred CCeeEecccccCCCCCCCcccccCCCccchhhHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHHH
Q 001126 514 GGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSK 593 (1149)
Q Consensus 514 Gn~V~ly~dg~~~~~~~~~i~l~~g~~y~~~~~f~al~eAI~~Ak~sI~I~~W~~~p~i~L~r~~~~~~g~rL~dlL~~k 593 (1149)
++.++++.+|.. .........++++|.+||++|+|++-. ++.+ ..|.++|+.|
T Consensus 302 ~~~~qi~~sgP~---------------~~~~~~~~~~~~~I~~A~~~I~I~tpY------fip~------~~i~~aL~~A 354 (483)
T PRK01642 302 GHTVQVIASGPG---------------DPEETIHQFLLTAIYSARERLWITTPY------FVPD------EDLLAALKTA 354 (483)
T ss_pred CceEEEEeCCCC---------------ChhhHHHHHHHHHHHHhccEEEEEcCC------cCCC------HHHHHHHHHH
Confidence 457888877741 112246778999999999999999732 2222 5799999999
Q ss_pred HhcCCeEEEEEecCCCcccccccccccccccccHHHHHHhccCCcEEEEccCccccccccccccccccccccccceEEec
Q 001126 594 SQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVD 673 (1149)
Q Consensus 594 A~rGVkVrILVwD~~gs~~~~g~k~~g~m~~~~~~t~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~rHHQKiVVVD 673 (1149)
|+|||+|+||+ +....... .........+.+...||++..+.. ...|.|++|||
T Consensus 355 a~rGV~Vril~-p~~~d~~~--------~~~~~~~~~~~L~~~Gv~I~~y~~-----------------~~~HaK~~ivD 408 (483)
T PRK01642 355 ALRGVDVRIII-PSKNDSLL--------VFWASRAFFTELLEAGVKIYRYEG-----------------GLLHTKSVLVD 408 (483)
T ss_pred HHcCCEEEEEe-CCCCCcHH--------HHHHHHHHHHHHHHcCCEEEEeCC-----------------CceEeEEEEEC
Confidence 99999999997 54321110 001112233445678999877632 12699999999
Q ss_pred CCCCCCCccEEEEEcccccCCCCCCCCCCCccccccccCCCCCCCCccccCCCCCCCCCCeeeeeeEEcCH-HHHHHHHH
Q 001126 674 ADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTQGNTTGCPREPWHDLHSKIDGP-AAYDVLTN 752 (1149)
Q Consensus 674 ~~~~~~~r~~vAFVGGiNL~dgRwDt~~H~l~~~~~~~~~~Dy~np~~~~~~~~~~pr~PWHDv~vrI~GP-aa~Dl~~~ 752 (1149)
++ +++||+.|+...-+. --+++.+.|.++ .+.++.+.
T Consensus 409 ~~--------~~~vGS~N~d~rS~~----------------------------------~N~E~~~~i~d~~~~~~l~~~ 446 (483)
T PRK01642 409 DE--------LALVGTVNLDMRSFW----------------------------------LNFEITLVIDDTGFAADLAAM 446 (483)
T ss_pred CC--------EEEeeCCcCCHhHHh----------------------------------hhhcceEEEECHHHHHHHHHH
Confidence 96 999999999664331 113678888887 68999999
Q ss_pred HHHHHHhh
Q 001126 753 FEERWRKA 760 (1149)
Q Consensus 753 F~qrWn~~ 760 (1149)
|.++|...
T Consensus 447 f~~d~~~s 454 (483)
T PRK01642 447 QEDYFARS 454 (483)
T ss_pred HHHHHHhC
Confidence 99999864
No 138
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.90 E-value=5.9e-09 Score=104.74 Aligned_cols=93 Identities=19% Similarity=0.250 Sum_probs=76.2
Q ss_pred EEEEEEEeeCCCCCCC--CCccccccccccCCCCCCCCcEEEEEECC--EEEeeeeeecCCCC--CeeceEEEEEccC--
Q 001126 349 LDIWIYSAKNLPNMDM--FHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSED--PVWQQHFYVPVAH-- 420 (1149)
Q Consensus 349 L~VtVieAk~L~~~D~--~g~~~~~~~~k~~~~~~~sDPYV~V~l~g--~~~~rTkVi~nt~n--PvWNE~F~f~v~~-- 420 (1149)
|+|.|.+|++++..+. .|. ..+||||++.+.+ ...++|.|..+++| |+||+.|.|++..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~-------------~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~ 68 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGE-------------KMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLP 68 (133)
T ss_pred EEEEEEECcCCcccccccCCc-------------cccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCC
Confidence 8999999999765443 332 1289999999987 35569999999999 9999999998765
Q ss_pred -------------------C---CceEEEEEEEccC-CCCcceeeEEEeceeeccCC
Q 001126 421 -------------------S---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGG 454 (1149)
Q Consensus 421 -------------------~---~~~L~~~V~D~D~-~~ddfIG~v~Ipl~~L~~G~ 454 (1149)
. ...|.|+|||+|. ..|++||++.|++..+..+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 69 AEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ccceeEEEeeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 1 2578999999998 56999999999999888664
No 139
>PRK11263 cardiolipin synthase 2; Provisional
Probab=98.87 E-value=1.8e-08 Score=119.31 Aligned_cols=133 Identities=15% Similarity=0.287 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCchh
Q 001126 841 SIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAAT 920 (1149)
Q Consensus 841 sI~~ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~aira~rgv~V~IVlP~~Peg~p~~~s~ 920 (1149)
++..+++++|++||++|+||+.+|..+. +..++..+|++| +++||+|+|+++.... ..
T Consensus 18 e~~~~l~~~I~~Ak~~I~i~~yi~~~d~--------------~g~~l~~aL~~a--a~rGV~Vril~D~~gs--~~---- 75 (411)
T PRK11263 18 QYYPRVFEAIAAAQEEILLETFILFEDK--------------VGKQLHAALLAA--AQRGVKVEVLVDGYGS--PD---- 75 (411)
T ss_pred HHHHHHHHHHHHhCCEEEEEEEEEecCc--------------hHHHHHHHHHHH--HHCCCEEEEEEECCCC--CC----
Confidence 6889999999999999999998887653 245667777765 4699999999987421 10
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHcCCceee-cccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCccccee
Q 001126 921 QRILFWQHKTMQMMYETIYKALVEVGLEGAF-SPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYV 999 (1149)
Q Consensus 921 ~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~-~P~~Yl~f~~Lr~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iYV 999 (1149)
....+.+.|.++|+++++ +|.. .+.+.+. | .-...
T Consensus 76 -------------~~~~~~~~L~~aGv~v~~~~p~~--~~~~~~~------------------~-----------~~~R~ 111 (411)
T PRK11263 76 -------------LSDEFVNELTAAGVRFRYFDPRP--RLLGMRT------------------N-----------LFRRM 111 (411)
T ss_pred -------------CCHHHHHHHHHCCeEEEEeCCcc--ccccccc------------------c-----------cccCC
Confidence 012467889999999853 3321 0000000 0 00146
Q ss_pred eeEEEEEeCeEEEEcccccccCCCC--CC-CCcceEEEEeCcc
Q 001126 1000 HSKGMIVDDEYVILGSANINQRSME--GT-RDTEIAMGAYQPE 1039 (1149)
Q Consensus 1000 HSKlmIVDD~~viIGSANiN~RSm~--G~-~DsEiav~i~dp~ 1039 (1149)
|.|++|||+++++|||.||.+.-+. |. .-.++++.|..|.
T Consensus 112 HrKiiVIDg~~a~vGg~N~~~~~~~~~g~~~w~D~~v~i~Gp~ 154 (411)
T PRK11263 112 HRKIVVIDGRIAFVGGINYSADHLSDYGPEAKQDYAVEVEGPV 154 (411)
T ss_pred cceEEEEcCCEEEEcCeEchHhhccccCCCCceEEEEEEECHH
Confidence 9999999999999999999764442 21 1367788888774
No 140
>PRK05443 polyphosphate kinase; Provisional
Probab=98.81 E-value=2.5e-08 Score=124.03 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=91.5
Q ss_pred HHHHHHHHhhcc-----EEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCc
Q 001126 844 TAYVKAIRSAQH-----FIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGA 918 (1149)
Q Consensus 844 ~ayl~aI~~Ak~-----fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~aira~rgv~V~IVlP~~Peg~p~~~ 918 (1149)
+.+++.|++|.+ .|.|+--.+..++ .|+.+|.+| +++|++|.|+++..+-
T Consensus 351 ~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~s-----------------~iv~aL~~A--a~~Gk~V~vlve~kar------ 405 (691)
T PRK05443 351 DPVVEFLRQAAADPDVLAIKQTLYRTSKDS-----------------PIVDALIEA--AENGKQVTVLVELKAR------ 405 (691)
T ss_pred hHHHHHHHHhccCCCeeEEEEEEEEecCCH-----------------HHHHHHHHH--HHcCCEEEEEEccCcc------
Confidence 457889999999 8999764444332 567777776 4789999999998541
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCcccce
Q 001126 919 ATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIY 998 (1149)
Q Consensus 919 s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~Lr~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iY 998 (1149)
+..++. ...+++|.++|+++.|. | ....
T Consensus 406 ----fde~~n-------~~~~~~L~~aGv~V~y~---~--------------------------------------~~~k 433 (691)
T PRK05443 406 ----FDEEAN-------IRWARRLEEAGVHVVYG---V--------------------------------------VGLK 433 (691)
T ss_pred ----ccHHHH-------HHHHHHHHHcCCEEEEc---c--------------------------------------CCcc
Confidence 112222 24678999999998541 0 0247
Q ss_pred eeeEEEEEeCe-------EEEEcccccccCCCCCCCCcceEEEEeCcchh
Q 001126 999 VHSKGMIVDDE-------YVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1041 (1149)
Q Consensus 999 VHSKlmIVDD~-------~viIGSANiN~RSm~G~~DsEiav~i~dp~~~ 1041 (1149)
+|||+++||++ |+.|||+|+|.||.. .++|+++.+.|++++
T Consensus 434 ~HaK~~lid~~e~~~~~~~~~iGTgN~n~~s~~--~y~D~~l~t~d~~i~ 481 (691)
T PRK05443 434 THAKLALVVRREGGGLRRYVHLGTGNYNPKTAR--LYTDLSLLTADPEIG 481 (691)
T ss_pred ceeEEEEEEeecCCceeEEEEEcCCCCCcchhh--hccceeEEEeChHHH
Confidence 89999999999 999999999999998 899999999998865
No 141
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.78 E-value=1.8e-08 Score=96.21 Aligned_cols=85 Identities=25% Similarity=0.367 Sum_probs=71.9
Q ss_pred EEEEEEEeeCCCCCC---CCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCCCceE
Q 001126 349 LDIWIYSAKNLPNMD---MFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEV 425 (1149)
Q Consensus 349 L~VtVieAk~L~~~D---~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~~~~L 425 (1149)
|+|+|..|+++...+ ++++ +||||.|.+++...+||++ +.||.|||+|.|++. ....+
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~---------------~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEi 61 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKR---------------PETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEE 61 (109)
T ss_pred CEEEEEEEecCccccchhhccC---------------CCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEE
Confidence 689999999998766 2332 8999999999997789998 589999999999994 67889
Q ss_pred EEEEEEccCCCCcceeeEEEeceeecc
Q 001126 426 HFFVKDSDVVGSELIGTVAIPVEQIYS 452 (1149)
Q Consensus 426 ~~~V~D~D~~~ddfIG~v~Ipl~~L~~ 452 (1149)
.|+|||+.....--||..-|.+++|..
T Consensus 62 el~VyDk~~~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 62 EVIVYDKGGDQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred EEEEEeCCCCeecceeeehhhHHHHHH
Confidence 999999865555589999999988874
No 142
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.75 E-value=1.9e-08 Score=116.48 Aligned_cols=123 Identities=23% Similarity=0.421 Sum_probs=101.6
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeec-eEEEEEccCC--
Q 001126 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQ-QHFYVPVAHS-- 421 (1149)
Q Consensus 345 lhGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWN-E~F~f~v~~~-- 421 (1149)
|.|.|.|+|.-|++|+-||..+. +.|.||.|.+++... ||-|..+++||.|| +=|.|+|.+.
T Consensus 1 mpgkl~vki~a~r~lpvmdkasd--------------~tdafveik~~n~t~-ktdvf~kslnp~wnsdwfkfevddadl 65 (1169)
T KOG1031|consen 1 MPGKLGVKIKAARHLPVMDKASD--------------LTDAFVEIKFANTTF-KTDVFLKSLNPQWNSDWFKFEVDDADL 65 (1169)
T ss_pred CCCcceeEEEeccCCcccccccc--------------cchheeEEEecccce-ehhhhhhhcCCcccccceEEecChhhh
Confidence 46889999999999999987654 379999999999987 99999999999999 5689998765
Q ss_pred -CceEEEEEEEccC-CCCcceeeEEEeceeecc----------CCceeeeEeeccCCCCCCCCCceeEEEEEeecc
Q 001126 422 -AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYS----------GGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPM 485 (1149)
Q Consensus 422 -~~~L~~~V~D~D~-~~ddfIG~v~Ipl~~L~~----------G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f~p~ 485 (1149)
...|.|+++|+|. +.+|-||.+.|.+..|.- |..+.+|||+++.-. +..|+|.+.++..-.
T Consensus 66 qdeplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih---girgeinvivkvdlf 138 (1169)
T KOG1031|consen 66 QDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH---GIRGEINVIVKVDLF 138 (1169)
T ss_pred ccCCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc---cccceeEEEEEEeeh
Confidence 3679999999999 669999999999988762 345689999987532 344688888875433
No 143
>smart00149 PLCYc Phospholipase C, catalytic domain (part); domain Y. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=98.67 E-value=2.3e-09 Score=104.63 Aligned_cols=58 Identities=22% Similarity=0.226 Sum_probs=52.6
Q ss_pred CCCCCcccCCCCCcc-cCccccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEEE
Q 001126 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNLD 350 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~LlhGtL~ 350 (1149)
..+.+|+.||.+.|+ +| |++.|+|||||+|..+|. .||||||+ |+.++.++|.+|...
T Consensus 41 ~~~~~~~~~n~~~l~RvY---P~g~R~dSSNy~P~~~W~----~G~QmVAlN~Qt~d~~m~lN~g~F~ 101 (115)
T smart00149 41 KAPTDFVRYNQRQLSRVY---PKGTRVDSSNYNPQVFWN----AGCQMVALNFQTPDKPMQLNQGMFR 101 (115)
T ss_pred HhHHHHHHhccccceEEC---cCCCcCCCCCCCCHHHHc----CCceEeEeecCCCChHHHHHhhHhh
Confidence 456789999999999 99 999999999999998877 99999999 999999998887554
No 144
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=98.67 E-value=1.4e-07 Score=108.33 Aligned_cols=157 Identities=17% Similarity=0.260 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHHHHhcCCeEEEEEecCCCcccccccccccccccc
Q 001126 546 CWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTH 625 (1149)
Q Consensus 546 ~f~al~eAI~~Ak~sI~I~~W~~~p~i~L~r~~~~~~g~rL~dlL~~kA~rGVkVrILVwD~~gs~~~~g~k~~g~m~~~ 625 (1149)
-.++|+..|..|++.|+|......|.+....+ . .-+.|+++|+++|-|||+||+||-+..-+... ..+.+. .
T Consensus 277 DL~ail~~i~~A~~fv~isVMdY~Ps~~y~k~-~--~fw~iDdaiR~aa~RgV~vR~lvs~~~~~~~~----m~~~L~-S 348 (456)
T KOG3603|consen 277 DLEAILNTIDEAQKFVYISVMDYFPSTIYSKN-H--RFWEIDDAIRRAAVRGVKVRLLVSCWKHSEPS----MFRFLR-S 348 (456)
T ss_pred hHHHHHHHHHHHhhheeeeehhccchheeecC-c--chhhhhHHHHHHhhcceEEEEEEeccCCCCch----HHHHHH-H
Confidence 47999999999999999998887887444444 2 34599999999999999999998322111100 000000 0
Q ss_pred cHHHHHHhccCCcEEEEc--cCccccccccccccccccccccccceEEecCCCCCCCccEEEEEcccccCCCCCCCCCCC
Q 001126 626 DEETRRVFKHSSVKVLLC--PRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHP 703 (1149)
Q Consensus 626 ~~~t~~~l~~~gV~v~l~--p~~~~~~~~~~~~~~~~~~~rHHQKiVVVD~~~~~~~r~~vAFVGGiNL~dgRwDt~~H~ 703 (1149)
-+.....++|..|+|+++ |..... .......+|.|++|-+. .||+|--|.+.+||-...
T Consensus 349 Lq~l~~~~~~~~iqvk~f~VP~~~~~--------~ip~~Rv~HnKymVTe~---------aayIGTSNws~dYf~~Ta-- 409 (456)
T KOG3603|consen 349 LQDLSDPLENGSIQVKFFIVPQTNIE--------KIPFARVNHNKYMVTES---------AAYIGTSNWSGDYFTSTA-- 409 (456)
T ss_pred HHHhcCccccCceEEEEEEeCCCccc--------cCchhhhccceeEEeec---------ceeeeccCCCccceeccC--
Confidence 001111234667888776 543211 12334679999999997 899999999999883211
Q ss_pred ccccccccCCCCCCCCccccCCCCCCCCCCeeeeeeE-----EcCHHHHHHHHHHHHHHHhhc
Q 001126 704 LFRTLQTLHKDDYHNPTFTQGNTTGCPREPWHDLHSK-----IDGPAAYDVLTNFEERWRKAS 761 (1149)
Q Consensus 704 l~~~~~~~~~~Dy~np~~~~~~~~~~pr~PWHDv~vr-----I~GPaa~Dl~~~F~qrWn~~t 761 (1149)
-+++. -.|+++.+|...|+++|+...
T Consensus 410 --------------------------------G~~ivv~q~~~~~~~~~ql~~vFeRdW~S~Y 440 (456)
T KOG3603|consen 410 --------------------------------GTAIVVRQTPHKGTLVSQLKAVFERDWNSTY 440 (456)
T ss_pred --------------------------------ceEEEEecCCCCCcHHHHHHHHHhhcccccc
Confidence 11111 247899999999999999754
No 145
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.63 E-value=8.6e-09 Score=75.59 Aligned_cols=27 Identities=63% Similarity=1.040 Sum_probs=18.6
Q ss_pred ccccccceEEecCCCCCCCccEEEEEcccccCCCC
Q 001126 662 IYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGR 696 (1149)
Q Consensus 662 ~~rHHQKiVVVD~~~~~~~r~~vAFVGGiNL~dgR 696 (1149)
.++||||++|||++ +|||||+|||++|
T Consensus 2 ~~~~H~K~~vvD~~--------~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 2 GGSHHQKFVVVDDR--------VAFVGGANLCDGR 28 (28)
T ss_dssp TBEE---EEEETTT--------EEEEE---SSHHH
T ss_pred CcceeeEEEEEcCC--------EEEECceecCCCC
Confidence 47899999999997 9999999999864
No 146
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=98.62 E-value=5.2e-09 Score=115.06 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=52.7
Q ss_pred CCCCCcccCCCCCcc-cCccccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001126 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~LlhGtL 349 (1149)
..+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. .||||||+ |+.++.++|.+|..
T Consensus 196 ~~~~~~v~~n~~~l~RiY---PkgtRidSSNynP~~~W~----~G~QmVALN~QT~d~~M~LN~G~F 255 (258)
T cd08630 196 EAGNSFVRHNARQLTRVY---PLGLRMNSANYSPQEMWN----SGCQLVALNFQTPGYEMDLNAGRF 255 (258)
T ss_pred HhHHHHHHhhhcccceeC---CCCCcCCCCCCCcHHHhc----CCCeEEEecccCCChhhhhhcccc
Confidence 566789999999999 99 999999999999997777 99999999 99999999998864
No 147
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=98.61 E-value=6.6e-09 Score=114.00 Aligned_cols=57 Identities=21% Similarity=0.111 Sum_probs=52.8
Q ss_pred CCCCCcccCCCCCcc-cCccccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001126 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~LlhGtL 349 (1149)
..+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. +||||||+ |+.++.++|.+|..
T Consensus 195 ~~~~~~v~~n~r~l~RvY---P~GtRidSSNynP~~~W~----~G~QmVALN~Qt~d~~M~LN~G~F 254 (257)
T cd08595 195 SSGADFVGHTQRFITRIY---PKGTRASSSNYNPQEFWN----VGCQMVALNFQTLGAPMDLQNGKF 254 (257)
T ss_pred HhHHHHHHHhhcCCceeC---cCCCCCCCCCCCcHHHHc----CCCeEEEecccCCChhhhhhcCcc
Confidence 566789999999999 99 999999999999997777 99999999 99999999998864
No 148
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=98.61 E-value=6.5e-09 Score=113.62 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=53.1
Q ss_pred cCCCCCcccCCCCCcc-cCccccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001126 285 LSSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 285 ~~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~LlhGtL 349 (1149)
...+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. .||||||+ |+.++.++|.+|..
T Consensus 191 ~~~~~~~v~~N~~~l~RvY---P~G~RvdSSNy~P~~~W~----~G~QmVALN~Qt~d~~m~lN~g~F 251 (254)
T cd08633 191 QQKPAQYLRFNQRQLSRIY---PSSYRVDSSNYNPQPFWN----AGCQMVALNYQSEGRMLQLNRAKF 251 (254)
T ss_pred HHCHHHHHHhhhhcccccC---CCCCCCCCCCCCchHHhc----CCCeEEEecccCCCchhHhhcccc
Confidence 3567789999999999 99 999999999999997777 99999999 99999999988864
No 149
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=98.60 E-value=5.9e-09 Score=112.77 Aligned_cols=57 Identities=19% Similarity=0.086 Sum_probs=52.7
Q ss_pred CCCCCcccCCCCCcc-cCccccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001126 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~LlhGtL 349 (1149)
..+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. .||||||+ |+.+..++|.+|..
T Consensus 167 ~~~~~~v~~n~~~l~RvY---P~g~RvdSSNy~P~~~W~----~G~QmVAlN~Qt~d~~m~lN~g~F 226 (229)
T cd08592 167 QKGKIFLKYNRRQLSRVY---PKGQRVDSSNYDPVPMWN----CGSQMVALNFQTPDKPMQLNQALF 226 (229)
T ss_pred hhHHHHHHhhhhcceeeC---CCCCcCcCCCCCchHHhc----CCceEEEeeccCCChhHHhhcccc
Confidence 577889999999999 99 999999999999997777 99999999 99999999888854
No 150
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=98.59 E-value=6.3e-09 Score=114.01 Aligned_cols=57 Identities=19% Similarity=0.121 Sum_probs=52.7
Q ss_pred CCCCCcccCCCCCcc-cCccccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001126 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~LlhGtL 349 (1149)
..+.+|+.||.+.|+ +| |+|.|||||||+|+.+|. .||||||+ |+.++.++|.+|..
T Consensus 192 ~~~~~lv~~n~~~l~RiY---P~g~RvdSSNynP~~~W~----~G~QmVALN~Qt~d~~m~LN~G~F 251 (254)
T cd08596 192 RYPQKLVQHTRCQLLRTY---PAATRIDSSNPNPLIFWL----HGLQLVALNYQTDDLPMHLNAAMF 251 (254)
T ss_pred HCHHHHHHhhhhcceeec---cCCCcCCCCCCCcHHHHh----CCCeEEeecccCCChHHHhhhchh
Confidence 566889999999999 99 999999999999997777 99999999 99999999988864
No 151
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=98.59 E-value=7.3e-09 Score=114.28 Aligned_cols=57 Identities=26% Similarity=0.230 Sum_probs=52.7
Q ss_pred CCCCCcccCCCCCcc-cCccccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001126 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~LlhGtL 349 (1149)
..+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. .||||||+ |+.++.++|.+|..
T Consensus 198 ~~~~~~v~~n~~~l~RvY---P~G~RvdSSNynP~~~W~----~G~QmVALN~Qt~d~~M~lN~g~F 257 (260)
T cd08597 198 EFPEDFVNYNKKFLSRVY---PSPMRVDSSNYNPQDFWN----CGCQIVAMNYQTPGLMMDLNTGKF 257 (260)
T ss_pred HCHHHHHHHhhhcCceeC---cCCCCCCCCCCCchHHhc----CCCeEeeecccCCChhhhhhcccc
Confidence 566889999999999 99 999999999999997777 99999999 99999999988864
No 152
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=98.58 E-value=9.6e-09 Score=112.70 Aligned_cols=57 Identities=23% Similarity=0.106 Sum_probs=52.5
Q ss_pred CCCCCcccCCCCCcc-cCccccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001126 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~LlhGtL 349 (1149)
..+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. .||||||+ |+.++.++|.+|..
T Consensus 196 ~~~~~~v~~n~~~l~RiY---P~g~RvdSSNy~P~~~W~----~G~QmVALN~Qt~d~~m~LN~G~F 255 (258)
T cd08629 196 ESGNGFVRHNVSCLSRIY---PAGWRTDSSNYSPVEMWN----GGCQIVALNFQTPGPEMDVYLGCF 255 (258)
T ss_pred HhHHHHHHhchhccceeC---CCCCCCCCCCCCchHHhc----CCceEEEecccCCChhHHhhhchh
Confidence 456789999999999 99 999999999999997777 99999999 99999999988854
No 153
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=98.58 E-value=1.1e-08 Score=110.33 Aligned_cols=56 Identities=18% Similarity=0.067 Sum_probs=51.3
Q ss_pred CCCCcccCCCCCcc-cCccccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001126 287 SPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 287 ~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~LlhGtL 349 (1149)
.+.+|+.||.+.|+ +| |+|.|+|||||+|..+|. .||||||+ |+.++.++|..|..
T Consensus 168 ~~~~fv~~n~~~l~RiY---P~G~RidSSNy~P~~~W~----~G~QmVALN~Qt~d~~M~LN~G~F 226 (229)
T cd08627 168 KGKKFLQYNRRQLSRIY---PKGQRLDSSNYDPLPMWI----CGSQLVALNFQTPDKPMQMNQALF 226 (229)
T ss_pred hHHHHHHhcccceeEeC---CCCCcCcCCCCCchhHhc----cCcEEEEeeccCCCcchhhhcCcc
Confidence 45689999999999 99 999999999999997777 99999999 99999999888854
No 154
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=98.58 E-value=3.7e-07 Score=109.21 Aligned_cols=136 Identities=18% Similarity=0.207 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCC--CCCCCc
Q 001126 841 SIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPE--GVPTGA 918 (1149)
Q Consensus 841 sI~~ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~aira~rgv~V~IVlP~~Pe--g~p~~~ 918 (1149)
.+..+++++|++|+++||||+-||-.+. ++.+++.+|.+|.++++|++|+|++...-. |..+..
T Consensus 35 ~f~~~Ll~~I~~Ak~~I~l~~y~~~~D~--------------~g~~il~AL~~a~~~~~gv~VrvLvD~~Ra~Rg~iG~~ 100 (451)
T PRK09428 35 DFRETLLEKIASAKKRIYIVALYLEDDE--------------AGREILDALYQAKQQNPELDIKVLVDWHRAQRGLIGAA 100 (451)
T ss_pred HHHHHHHHHHHhcCCeEEEEEEEecCCc--------------hHHHHHHHHHHHHhcCCCcEEEEEEEcccccccccccC
Confidence 6889999999999999999999998664 256888899988888899999999985310 000000
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHcC--CceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCccc
Q 001126 919 ATQRILFWQHKTMQMMYETIYKALVEVG--LEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFM 996 (1149)
Q Consensus 919 s~~~il~~~~rTm~~~~~si~~~L~~~G--v~~~~~P~~Yl~f~~Lr~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 996 (1149)
. ..+..+++..|.++| +++.+ |.+..+ .+...
T Consensus 101 ~------------~~~~~~~~~~l~~~~~gv~v~~--------f~~p~~--------------------------~~e~~ 134 (451)
T PRK09428 101 A------------SNTNADWYCEMAQEYPGVDIPV--------YGVPVN--------------------------TREAL 134 (451)
T ss_pred C------------CCcCHHHHHHHHHhCCCceEEE--------cCCccc--------------------------cchhh
Confidence 0 001134667787764 76643 211000 00012
Q ss_pred ceeeeEEEEEeCeEEEEcccccccCCCCC----CCCcceEEEEeCcc
Q 001126 997 IYVHSKGMIVDDEYVILGSANINQRSMEG----TRDTEIAMGAYQPE 1039 (1149)
Q Consensus 997 iYVHSKlmIVDD~~viIGSANiN~RSm~G----~~DsEiav~i~dp~ 1039 (1149)
...|-|++||||++++.| ||||+--+.. ..|. .+.|++|.
T Consensus 135 gr~HrKi~IiD~~v~ysG-aNi~d~Yl~~~~~~r~Dr--y~~i~g~~ 178 (451)
T PRK09428 135 GVLHLKGFIIDDTVLYSG-ASLNNVYLHQHDKYRYDR--YHLIRNAE 178 (451)
T ss_pred hhceeeEEEECCCEEEec-ccccHHHhcCCcccCcce--EEEEeCch
Confidence 347999999999999999 8999855431 1244 56677765
No 155
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=98.58 E-value=9.8e-09 Score=113.27 Aligned_cols=57 Identities=26% Similarity=0.245 Sum_probs=52.2
Q ss_pred CCCCCcccCCCCCcc-cCccccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001126 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~LlhGtL 349 (1149)
..+.+|+.||.+.|+ +| |+|.|||||||+|..+|. .||||||+ |+.++.++|..|..
T Consensus 196 ~~~~~~v~~N~~~l~RvY---P~G~RvdSSNydP~~~W~----~G~QmVALN~QT~D~~M~LN~G~F 255 (258)
T cd08625 196 KSPMEFVEYNKKQLSRIY---PKGTRVDSSNYMPQLFWN----VGCQMVALNFQTLDLAMQLNMGVF 255 (258)
T ss_pred hCHHHHHHhhhcceeeec---cCCCcCcCCCCCChhHhc----CcceEEEeecCCCCcchhhhcccc
Confidence 456789999999999 99 999999999999998888 99999999 99999999888754
No 156
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=98.57 E-value=8.5e-09 Score=113.14 Aligned_cols=57 Identities=19% Similarity=0.143 Sum_probs=52.3
Q ss_pred CCCCCcccCCCCCcc-cCccccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001126 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~LlhGtL 349 (1149)
..+.+|+.||.+.|+ +| |+|.|+|||||+|..+|. .||||||+ |+.++.++|.+|..
T Consensus 192 ~~~~~~v~~N~~~l~RvY---P~G~RvdSSNynP~~~W~----~G~QmVALN~QT~d~~M~LN~G~F 251 (254)
T cd08628 192 QKPVQLLKYNRKGLTRVY---PKGQRVDSSNYDPFRLWL----CGSQMVALNFQTADKYMQLNHALF 251 (254)
T ss_pred hHHHHHHHHhHhhhhhhC---CCCCcCCCCCCCchHHhc----CCCeEEEeeccCCChhhhhhhhhc
Confidence 456789999999999 99 999999999999998887 99999999 99999999888854
No 157
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=98.57 E-value=8.8e-09 Score=113.29 Aligned_cols=58 Identities=19% Similarity=0.134 Sum_probs=52.5
Q ss_pred CCCCCcccCCCCCcc-cCccccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEEE
Q 001126 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNLD 350 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~LlhGtL~ 350 (1149)
..+.+|+.||.+.|+ +| |+|.|+|||||+|..+|. .||||||+ |+.++.++|..|...
T Consensus 199 ~~~~~fv~~N~~~l~RiY---P~G~RvdSSNynP~~~W~----~G~QmVALN~QT~D~~M~LN~G~F~ 259 (261)
T cd08624 199 KASVQFVEYNKRQMSRIY---PKGTRMDSSNYMPQMFWN----VGCQMVALNFQTMDLPMQQNMALFE 259 (261)
T ss_pred HhHHHHHHhchhheeeeC---CCCCcccCcCCCchHHhc----CCCeEEEecccCCChhhhhhccccc
Confidence 455789999999999 99 999999999999998887 99999999 999999998888643
No 158
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=98.56 E-value=8.8e-09 Score=113.11 Aligned_cols=57 Identities=21% Similarity=0.082 Sum_probs=52.5
Q ss_pred CCCCCcccCCCCCcc-cCccccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001126 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~LlhGtL 349 (1149)
..+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. .||||||+ |+.++.++|.+|..
T Consensus 196 ~~~~~~v~~n~~~l~RiY---P~g~RvdSSNy~P~~~W~----~G~QmVALN~Qt~d~~m~LN~G~F 255 (258)
T cd08631 196 EAGNEFVQHNTWQLSRVY---PSGLRTDSSNYNPQEMWN----AGCQMVALNFQTAGLEMDLNDGLF 255 (258)
T ss_pred hchHHHHHHHHhcCceeC---cCCCCCCCCCCCcHHHHh----CCCeEeeecccCCChhHHhhcchh
Confidence 456789999999999 99 999999999999997777 99999999 99999999988854
No 159
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=98.55 E-value=9.7e-09 Score=112.08 Aligned_cols=58 Identities=19% Similarity=0.151 Sum_probs=53.0
Q ss_pred CCCCCcccCCCCCcc-cCccccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEEE
Q 001126 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNLD 350 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~LlhGtL~ 350 (1149)
..+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. .||||||+ |+.++.++|.+|...
T Consensus 191 ~~~~~~v~~n~~~l~RvY---P~g~RidSSNy~P~~~W~----~G~QmVAlN~Qt~d~~m~LN~g~F~ 251 (253)
T cd08632 191 QKAEQFMTYNQKQLTRIY---PSAYRIDSSNFNPLPYWN----VGCQLVALNYQSEGRMMQLNRAKFM 251 (253)
T ss_pred HhHHHHHHHhhhccceeC---CCCCcCcCCCCCcHHHhc----CCCeEEEecccCCChhHHhhccccc
Confidence 566789999999999 99 999999999999997777 99999999 999999999988643
No 160
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=98.55 E-value=1.2e-08 Score=109.91 Aligned_cols=57 Identities=19% Similarity=0.163 Sum_probs=52.5
Q ss_pred CCCCCcccCCCCCcc-cCccccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001126 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~LlhGtL 349 (1149)
..+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. .||||||+ |+.++.++|..|..
T Consensus 165 ~~~~~~v~~n~~~l~RiY---P~g~RvdSSNy~P~~~W~----~G~QmVALN~Qt~d~~m~LN~g~F 224 (227)
T cd08594 165 QKAAQFLRFNQRQLSRIY---PSAYRIDSSNFNPQPYWN----AGCQLVALNYQTEGRMLQLNRAKF 224 (227)
T ss_pred HHHHHHHHhcccccceeC---CCCCcCcCCCCCchHHhc----CCceEEEecccCCChhhHhhcccc
Confidence 567889999999999 99 999999999999998887 99999999 99999999888754
No 161
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=98.54 E-value=1.3e-08 Score=111.76 Aligned_cols=58 Identities=24% Similarity=0.271 Sum_probs=52.8
Q ss_pred CCCCCcccCCCCCcc-cCccccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEEE
Q 001126 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNLD 350 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~LlhGtL~ 350 (1149)
..+.+|+.||.+.|+ +| |+|.|||||||+|+.+|. .||||||+ |+.++.++|.+|...
T Consensus 195 ~~~~~~v~~n~~~l~RiY---P~G~RvdSSNynP~~~W~----~G~QmVALN~Qt~d~~m~LN~G~F~ 255 (257)
T cd08626 195 TSAIEFVNYNKRQMSRIY---PKGTRVDSSNYMPQIFWN----AGCQMVSLNFQTPDLGMQLNQGKFE 255 (257)
T ss_pred HHHHHHHHHhhhcCceeC---cCCCCCcCCCCCcHHHhc----CCCeEEEecccCCChhHHhhhcccc
Confidence 456789999999999 99 999999999999997777 99999999 999999999988653
No 162
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=98.52 E-value=1.6e-08 Score=111.20 Aligned_cols=57 Identities=25% Similarity=0.224 Sum_probs=52.2
Q ss_pred CCCCCcccCCCCCcc-cCccccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001126 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~LlhGtL 349 (1149)
..+.+|+.||.+.|+ +| |+|.|+|||||+|..+|. .||||||+ |+.++.++|.+|..
T Consensus 196 ~~~~~~v~~N~~~l~RvY---P~G~RvdSSNy~P~~~W~----~G~QmVALN~QT~d~~M~LN~G~F 255 (258)
T cd08623 196 KSPVEFVEYNKMQLSRIY---PKGTRVDSSNYMPQLFWN----AGCQMVALNFQTVDLSMQINMGMY 255 (258)
T ss_pred hCHHHHHHHhhhhceeec---cCCCcccCCCCCChhhhc----CCceEEEeecCCCCcchhhhcccc
Confidence 556789999999999 99 999999999999998887 99999999 99999999888854
No 163
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=98.48 E-value=2.1e-08 Score=108.72 Aligned_cols=57 Identities=18% Similarity=0.100 Sum_probs=52.7
Q ss_pred CCCCCcccCCCCCcc-cCccccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001126 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~LlhGtL 349 (1149)
..+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. .||||||+ |+.+++++|.+|..
T Consensus 166 ~~~~~~v~~n~~~l~RvY---P~g~RvdSSNy~P~~~W~----~G~QmVALN~Qt~d~~m~LN~G~F 225 (228)
T cd08599 166 EHPTDLIEFTQKNLLRVY---PAGLRITSSNYDPMLAWM----HGAQMVALNMQGYDRPLWLNRGKF 225 (228)
T ss_pred hcHHHHHHHhhccceeec---cCCcccCCCCCCChHHhc----CcceEeeeecCCCChhhhhhcccc
Confidence 567789999999999 99 999999999999997777 99999999 99999999988864
No 164
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=98.46 E-value=2.7e-08 Score=109.30 Aligned_cols=57 Identities=26% Similarity=0.299 Sum_probs=52.3
Q ss_pred CCCCCcccCCCCCcc-cCccccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001126 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~LlhGtL 349 (1149)
..+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. .||||||+ |+.++.++|.+|..
T Consensus 195 ~~~~~~v~~n~~~l~RvY---P~g~RvdSSNynP~~~W~----~G~QmVALN~Qt~d~~m~lN~g~F 254 (257)
T cd08591 195 KSPIEFVNYNKRQLSRIY---PKGTRVDSSNYMPQIFWN----AGCQMVALNFQTPDLPMQLNQGKF 254 (257)
T ss_pred HHHHHHHHHhhhcCceeC---cCCCcCcCCCCCcHHHhc----CCCeEEEecCcCCChhHHhhcccc
Confidence 456789999999999 99 999999999999997777 99999999 99999999988864
No 165
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=98.45 E-value=2e-08 Score=108.94 Aligned_cols=57 Identities=16% Similarity=0.051 Sum_probs=52.3
Q ss_pred CCCCCcccCCCCCcc-cCccccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001126 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~LlhGtL 349 (1149)
..+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. .||||||+ |+.++.++|.+|..
T Consensus 169 ~~~~~lv~~n~~~l~RvY---P~g~RvdSSNynP~~~W~----~G~QmVALN~Qt~d~~m~LN~G~F 228 (231)
T cd08598 169 DKRAALDKHNRRHLMRVY---PSGTRISSSNFNPLPFWR----AGVQMVALNWQTYDLGMQLNEAMF 228 (231)
T ss_pred HHHHHHHHHhhhceeeeC---CCCCcCCCCCCCcHHHHh----CCCeEEEecccCCChhhhhhcccc
Confidence 466789999999999 99 999999999999997777 99999999 99999999988854
No 166
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=98.44 E-value=3.1e-08 Score=107.21 Aligned_cols=57 Identities=26% Similarity=0.290 Sum_probs=52.4
Q ss_pred CCCCCcccCCCCCcc-cCccccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001126 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~LlhGtL 349 (1149)
..+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. .||||||+ |+.++.++|..|..
T Consensus 164 ~~~~~l~~~n~~~l~RvY---P~g~RvdSSNynP~~~W~----~G~QmVALN~Qt~d~~m~LN~g~F 223 (226)
T cd08558 164 ESPEEFVKYNKRQLSRVY---PKGTRVDSSNYNPQPFWN----AGCQMVALNYQTPDLPMQLNQGKF 223 (226)
T ss_pred HChHHHHHhcccceeEEC---cCCCcCCCCCCCcHHHHh----CCCeEeeecccCCChhhhhhcccc
Confidence 467899999999999 99 999999999999997777 99999999 99999999888754
No 167
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=98.44 E-value=3.4e-08 Score=108.92 Aligned_cols=57 Identities=23% Similarity=0.055 Sum_probs=52.4
Q ss_pred CCCCCcccCCCCCcc-cCccccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001126 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1149)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~LlhGtL 349 (1149)
..+.+|..||.+.|+ +| |+|.|+|||||+|..+|. .||||||+ |+.++.++|.+|..
T Consensus 195 ~~~~~lv~~n~~~l~RvY---P~g~RidSSNynP~~~W~----~G~QmVALN~Qt~D~~m~LN~G~F 254 (257)
T cd08593 195 ESGNEFVRHNKRQLSRIY---PAGLRTDSSNYDPQEMWN----VGCQIVALNFQTPGEEMDLNDGLF 254 (257)
T ss_pred HhHHHHHHhhhhccceeC---CCCCcCCCCCCCcHHHHh----CCCeEeeecccCCChHHHhhhchh
Confidence 456789999999999 99 999999999999997777 99999999 99999999988854
No 168
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=98.37 E-value=3e-07 Score=67.73 Aligned_cols=26 Identities=54% Similarity=0.700 Sum_probs=24.5
Q ss_pred ceeeeEEEEEeCeEEEEcccccccCC
Q 001126 997 IYVHSKGMIVDDEYVILGSANINQRS 1022 (1149)
Q Consensus 997 iYVHSKlmIVDD~~viIGSANiN~RS 1022 (1149)
...|+|+||||+++++|||+||+.||
T Consensus 3 ~~~H~K~~v~D~~~~~iGs~N~~~~~ 28 (28)
T smart00155 3 GVLHTKLMIVDDEIAYIGSANLDGRS 28 (28)
T ss_pred CcEEeEEEEEcCCEEEEeCccCCCCC
Confidence 47899999999999999999999987
No 169
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.36 E-value=1.4e-07 Score=112.32 Aligned_cols=89 Identities=27% Similarity=0.406 Sum_probs=78.0
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE------EEeeeeeecCCCCCeeceEEEEEccCC
Q 001126 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA------VVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1149)
Q Consensus 348 tL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~------~~~rTkVi~nt~nPvWNE~F~f~v~~~ 421 (1149)
+|.|.|+-|+++-..|.+|. +||||+|++... ...||+|+.+|+||+++|+|+|.|.-.
T Consensus 948 ~L~veVlhA~diipLD~NGl---------------SDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e 1012 (1103)
T KOG1328|consen 948 TLVVEVLHAKDIIPLDSNGL---------------SDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPE 1012 (1103)
T ss_pred chhhhhhccccccccCCCCC---------------CCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCcc
Confidence 78899999999999999987 999999999753 335999999999999999999998643
Q ss_pred -----CceEEEEEEEccC-CCCcceeeEEEeceeec
Q 001126 422 -----AAEVHFFVKDSDV-VGSELIGTVAIPVEQIY 451 (1149)
Q Consensus 422 -----~~~L~~~V~D~D~-~~ddfIG~v~Ipl~~L~ 451 (1149)
.+.|.|+|+|+|. ..+||-|++.+.|..+.
T Consensus 1013 ~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1013 PCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred ccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 3679999999998 66999999999888775
No 170
>PF00387 PI-PLC-Y: Phosphatidylinositol-specific phospholipase C, Y domain This entry is for the whole phospholipase C protein; InterPro: IPR001711 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), an eukaryotic intracellular enzyme, plays an important role in signal transduction processes [] (see IPR001192 from INTERPRO). It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as 'X-box' (see IPR000909 from INTERPRO) and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. At the C-terminal of the Y-box, there is a C2 domain (see IPR000008 from INTERPRO) possibly involved in Ca-dependent membrane attachment.; GO: 0004435 phosphatidylinositol phospholipase C activity, 0006629 lipid metabolic process, 0007165 signal transduction, 0035556 intracellular signal transduction; PDB: 3OHM_B 2FJU_B 2ZKM_X 3QR1_D 3QR0_A 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=98.22 E-value=3.8e-08 Score=96.75 Aligned_cols=54 Identities=20% Similarity=0.142 Sum_probs=38.9
Q ss_pred CCCCcccCCCCCcc-cCccccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeece
Q 001126 287 SPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG 347 (1149)
Q Consensus 287 ~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~LlhG 347 (1149)
.+.+|+.||.+.++ +| |++.|+|||||+|..+|. .||||||+ |+.+..++|-.|
T Consensus 44 ~~~~l~~~~~~~l~Rvy---P~~~R~~SsN~~P~~~W~----~G~Q~vALN~Qt~d~~m~ln~g 100 (118)
T PF00387_consen 44 HPSELVEHNKRHLVRVY---PSGTRIDSSNFNPLPFWN----CGCQMVALNFQTPDEPMQLNQG 100 (118)
T ss_dssp CHHHHHHHHHHSEEEEE-----TT-TT-----THHHHT----TT-SEEEB-TTS-SHHHHHHHH
T ss_pred ccchHHHhcccceEEec---CCccccCCCCCChHHHhh----ccCccceeeccCCChhHHHHHh
Confidence 46789999999999 99 999999999999997777 99999999 999998876554
No 171
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=98.20 E-value=6.9e-06 Score=98.11 Aligned_cols=136 Identities=21% Similarity=0.268 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhccceEEEE-eeccceeeEEeCCCCchHHHHHHHHHHHHhcCCeEEEEEecCCCcccccccccccccccc
Q 001126 547 WYDICNAISQAQRLIYITG-WSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTH 625 (1149)
Q Consensus 547 f~al~eAI~~Ak~sI~I~~-W~~~p~i~L~r~~~~~~g~rL~dlL~~kA~rGVkVrILVwD~~gs~~~~g~k~~g~m~~~ 625 (1149)
-..++++|.+|+++|+|+. |.+ .+ ..+.++|+.++++||+|+||+ ++.+.... ......
T Consensus 272 ~~~~~~~i~~A~~~i~i~~pYf~-------~~------~~~~~al~~a~~~Gv~V~ii~-~~~~~~d~------~~~~~~ 331 (438)
T COG1502 272 NRLLLKAINSARESILIATPYFV-------PD------RELLAALKAAARRGVDVRIII-PSLGANDS------AIVHAA 331 (438)
T ss_pred HHHHHHHHHhhceEEEEEcCCcC-------CC------HHHHHHHHHHHhcCCEEEEEe-CCCCCCCh------HHHHHH
Confidence 3679999999999999998 633 32 578899999999999999997 63221100 000001
Q ss_pred cHHHHHHhccCCcEEEEccCccccccccccccccccccccccceEEecCCCCCCCccEEEEEcccccCCCCCCCCCCCcc
Q 001126 626 DEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLF 705 (1149)
Q Consensus 626 ~~~t~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~rHHQKiVVVD~~~~~~~r~~vAFVGGiNL~dgRwDt~~H~l~ 705 (1149)
.......+...|+++..++.. ...|.|++|||++ +++||+.|+...-+..
T Consensus 332 ~~~~~~~l~~~gv~i~~~~~g----------------~~lH~K~~iiD~~--------~~~vGS~N~~~rS~~l------ 381 (438)
T COG1502 332 YRAYLKELLEAGVKVYEYPGG----------------AFLHSKVMIIDDR--------TVLVGSANLDPRSLRL------ 381 (438)
T ss_pred HHHHHHHHHHhCCEEEEecCC----------------CcceeeEEEEcCC--------EEEEeCCcCCHhHHHH------
Confidence 122344456788888665430 2479999999997 9999999998853310
Q ss_pred ccccccCCCCCCCCccccCCCCCCCCCCeeeeeeEEcCH-HHHHHHHHHHHHHHhh
Q 001126 706 RTLQTLHKDDYHNPTFTQGNTTGCPREPWHDLHSKIDGP-AAYDVLTNFEERWRKA 760 (1149)
Q Consensus 706 ~~~~~~~~~Dy~np~~~~~~~~~~pr~PWHDv~vrI~GP-aa~Dl~~~F~qrWn~~ 760 (1149)
| -.+.+.|+.+ .+.++...|...|...
T Consensus 382 ------------N----------------~E~~~~i~d~~~~~~~~~~~~~~~~~s 409 (438)
T COG1502 382 ------------N----------------FEVGLVIEDPELALKLRREFEADLARS 409 (438)
T ss_pred ------------h----------------hhheeEEeCHHHHHHHHHHHHHHHHHH
Confidence 1 2456778887 7899999999777654
No 172
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.96 E-value=1.1e-05 Score=97.13 Aligned_cols=104 Identities=19% Similarity=0.379 Sum_probs=80.2
Q ss_pred CCcEEEEEECCEE---EeeeeeecCCCCCeeceEEEEEccCC----------------CceEEEEEEE-ccC-CCCccee
Q 001126 383 SDPYVTIAVAGAV---VGRTFVISNSEDPVWQQHFYVPVAHS----------------AAEVHFFVKD-SDV-VGSELIG 441 (1149)
Q Consensus 383 sDPYV~V~l~g~~---~~rTkVi~nt~nPvWNE~F~f~v~~~----------------~~~L~~~V~D-~D~-~~ddfIG 441 (1149)
+||||+|...+.. ..+|+++++|.+|.|||.|+|.+... .-.|++++|+ .+. .+++|+|
T Consensus 151 ~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlG 230 (800)
T KOG2059|consen 151 CDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLG 230 (800)
T ss_pred CCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhce
Confidence 8999999987622 25999999999999999999997654 1357788887 444 4589999
Q ss_pred eEEEeceeeccCCceeeeEeeccC-CCC---CCCCCceeEEEEEeeccc
Q 001126 442 TVAIPVEQIYSGGKVEGTYPVLNG-SGK---PCKPGATLTLSIQYTPME 486 (1149)
Q Consensus 442 ~v~Ipl~~L~~G~~~~~W~pL~~~-~Gk---~~~~~g~L~L~L~f~p~~ 486 (1149)
++.+|+..+......+.||-|... +|+ .-+..|.+++.+.|+...
T Consensus 231 evrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~ 279 (800)
T KOG2059|consen 231 EVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDH 279 (800)
T ss_pred eEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeece
Confidence 999999998866667799999753 332 224557899999987543
No 173
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=97.96 E-value=3.2e-06 Score=62.16 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=17.9
Q ss_pred ceeeeEEEEEeCeEEEEcccccccCC
Q 001126 997 IYVHSKGMIVDDEYVILGSANINQRS 1022 (1149)
Q Consensus 997 iYVHSKlmIVDD~~viIGSANiN~RS 1022 (1149)
...|+|++||||++++|||+||+.|+
T Consensus 3 ~~~H~K~~vvD~~~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 3 GSHHQKFVVVDDRVAFVGGANLCDGR 28 (28)
T ss_dssp BEE---EEEETTTEEEEE---SSHHH
T ss_pred cceeeEEEEEcCCEEEECceecCCCC
Confidence 46899999999999999999999874
No 174
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=97.81 E-value=0.00056 Score=78.31 Aligned_cols=131 Identities=18% Similarity=0.192 Sum_probs=75.8
Q ss_pred hhhHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHHHH--hcCCeEEEEEecCC-Ccccccccccc
Q 001126 543 HGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKS--QEGVRVLLLVWDDP-TSRSILGYKMD 619 (1149)
Q Consensus 543 ~~~~f~al~eAI~~Ak~sI~I~~W~~~p~i~L~r~~~~~~g~rL~dlL~~kA--~rGVkVrILVwD~~-gs~~~~g~k~~ 619 (1149)
|.++|+.+...|.+||++|+|+.- ||=. ....|.+.|..+. +.-.+|.||+ |.. +.+..++...
T Consensus 37 p~~fy~~lk~~I~~aq~Ri~lasL------YlG~-----~E~elv~cl~~aL~~~~~L~v~iLl-D~~rgtr~~~~~~s- 103 (469)
T KOG3964|consen 37 PPEFYQRLKKLIKKAQRRIFLASL------YLGK-----LERELVDCLSNALEKNPSLKVSILL-DFLRGTRELPNSCS- 103 (469)
T ss_pred CHHHHHHHHHHHHHhhheeeeeee------ccch-----hHHHHHHHHHHHhccCCCcEEEeeh-hhhhhcccCcccch-
Confidence 458999999999999999999975 3311 3467788887774 4579999997 753 3222221100
Q ss_pred cccccccHHHHHHhccCCcEEEEc--cCccccccccccccccccccccccceEEecCCCCCCCccEEEEEcccccCCCCC
Q 001126 620 GVMQTHDEETRRVFKHSSVKVLLC--PRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRY 697 (1149)
Q Consensus 620 g~m~~~~~~t~~~l~~~gV~v~l~--p~~~~~~~~~~~~~~~~~~~rHHQKiVVVD~~~~~~~r~~vAFVGGiNL~dgRw 697 (1149)
|....--.+++ ...|++.++ |...+.....+-.+........|-|+.-+|+ -..+-|.|+..+|+
T Consensus 104 --~llp~~l~kkf--~e~vd~~lyhtp~Lrg~~k~Lvp~rfneg~GlQhmKIy~fdd---------eviiSGanls~dyf 170 (469)
T KOG3964|consen 104 --ALLPVWLGKKF--PERVDESLYHTPFLRGLSKSLVPARFNEGLGLQHMKIYGFDD---------EVIISGANLSNDYF 170 (469)
T ss_pred --hhchHHHhhhh--hhhhceeeecChhhhhhhhhcCchhhccccchhhhhhhcccH---------hhhcccccchhhhh
Confidence 00000011111 123555554 2222221111111111234678999999999 46788999999865
Q ss_pred CC
Q 001126 698 DN 699 (1149)
Q Consensus 698 Dt 699 (1149)
-+
T Consensus 171 TN 172 (469)
T KOG3964|consen 171 TN 172 (469)
T ss_pred cc
Confidence 43
No 175
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.74 E-value=5.5e-05 Score=74.82 Aligned_cols=112 Identities=25% Similarity=0.355 Sum_probs=76.7
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC---CEEEeeeeeecCCCCCeeceEEEEEcc------
Q 001126 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA---GAVVGRTFVISNSEDPVWQQHFYVPVA------ 419 (1149)
Q Consensus 349 L~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~---g~~~~rTkVi~nt~nPvWNE~F~f~v~------ 419 (1149)
|.|.|++|.||......-. ..-...+-.-.++.++||+|.+. +.+..+|+++-++..|+||-+|+|+|.
T Consensus 1 lsv~I~RA~GLqaAA~~la--~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~ 78 (143)
T cd08683 1 LSVQIHRASGLQAAARALA--EQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRN 78 (143)
T ss_pred CeEEeehhhhHHHHHHHHh--hhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcC
Confidence 4688899999864211000 00000000013347999999963 455569999999999999999999976
Q ss_pred --CC--------CceEEEEEEEccC-----------CCCcceeeEEEeceeecc-CCceeeeEee
Q 001126 420 --HS--------AAEVHFFVKDSDV-----------VGSELIGTVAIPVEQIYS-GGKVEGTYPV 462 (1149)
Q Consensus 420 --~~--------~~~L~~~V~D~D~-----------~~ddfIG~v~Ipl~~L~~-G~~~~~W~pL 462 (1149)
.. .+.+.|+||+.+. .+|-+||.+.||+.+|.. ...+.+||++
T Consensus 79 ~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 79 SGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred CCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 21 2568999998664 235589999999999984 3457899985
No 176
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.45 E-value=8.7e-05 Score=93.22 Aligned_cols=106 Identities=20% Similarity=0.258 Sum_probs=82.1
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCeeceEEEEE-
Q 001126 343 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVP- 417 (1149)
Q Consensus 343 ~LlhGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~rTkVi~nt~nPvWNE~F~f~- 417 (1149)
-.-.|+|.|-|.-||+|.-.. .|. .+||||+.++-- +...||||+++|.||.+||.....
T Consensus 1520 sY~~~~LtImV~H~K~L~~Lq-dg~--------------~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g 1584 (1639)
T KOG0905|consen 1520 SYNNGTLTIMVMHAKGLALLQ-DGQ--------------DPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDG 1584 (1639)
T ss_pred EEcCceEEEEhhhhccccccc-CCC--------------CCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecC
Confidence 345789999999999996331 122 289999999943 333599999999999999987654
Q ss_pred --ccCC-CceEEEEEEEccC-CCCcceeeEEEeceeeccCCceeeeEeec
Q 001126 418 --VAHS-AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1149)
Q Consensus 418 --v~~~-~~~L~~~V~D~D~-~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~ 463 (1149)
.... ...|.+.||..+. ..+.|+|.++|+|.++....+..+||+|-
T Consensus 1585 ~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1585 FPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred Cchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeecc
Confidence 3222 3789999998776 56889999999999987665556999993
No 177
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.00028 Score=83.75 Aligned_cols=100 Identities=18% Similarity=0.242 Sum_probs=79.6
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC------EEEeeeeeecCCCCCeeceEEEEEccCC
Q 001126 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG------AVVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1149)
Q Consensus 348 tL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g------~~~~rTkVi~nt~nPvWNE~F~f~v~~~ 421 (1149)
.++|+|+-|.+|+-. ..|. -.|||.|.+-| ++...|+.+.++|.|.+||+|+|.+...
T Consensus 1126 kvtvkvvaandlkwq-tsgm---------------FrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e 1189 (1283)
T KOG1011|consen 1126 KVTVKVVAANDLKWQ-TSGM---------------FRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNE 1189 (1283)
T ss_pred eEEEEEEecccccch-hccc---------------cccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccC
Confidence 378999999998732 1221 47999999844 4445899999999999999999998654
Q ss_pred ----CceEEEEEEEccCCC-CcceeeEEEeceeeccCCceeeeEeec
Q 001126 422 ----AAEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1149)
Q Consensus 422 ----~~~L~~~V~D~D~~~-ddfIG~v~Ipl~~L~~G~~~~~W~pL~ 463 (1149)
...|.|.|+|+.--. |..+|.+.++|.++...+.--.|+||.
T Consensus 1190 ~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLg 1236 (1283)
T KOG1011|consen 1190 GGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVADKGSCACWVPLG 1236 (1283)
T ss_pred CCCceEEEEEeehhheeecccceeeeeeeehhhHhhcCceeEeeecc
Confidence 257999999998744 669999999999998665666899993
No 178
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.00014 Score=81.66 Aligned_cols=98 Identities=19% Similarity=0.223 Sum_probs=77.5
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCeeceEEEEEccCCC-
Q 001126 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHSA- 422 (1149)
Q Consensus 348 tL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~rTkVi~nt~nPvWNE~F~f~v~~~~- 422 (1149)
-|.|+|+++..|..+|.++. +||||.+.+.- +..+||.+.+++.+|++||+|.|.+.+..
T Consensus 234 ~l~vt~iRc~~l~ssDsng~---------------sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdL 298 (362)
T KOG1013|consen 234 GLIVTIIRCSHLASSDSNGY---------------SDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDL 298 (362)
T ss_pred ceEEEEEEeeeeeccccCCC---------------CCccceeecCCCcchhhcccCcchhccCCccccccccccCCccch
Confidence 48999999999999999887 99999998852 23359999999999999999999886552
Q ss_pred --ceEEEEEEEccCC-CCcceeeEEEeceeeccCCceeeeEee
Q 001126 423 --AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1149)
Q Consensus 423 --~~L~~~V~D~D~~-~ddfIG~v~Ipl~~L~~G~~~~~W~pL 462 (1149)
..+.|.|||++.- +++++|-+.... ...+....+|+..
T Consensus 299 a~~kv~lsvgd~~~G~s~d~~GG~~~g~--~rr~~v~~h~gr~ 339 (362)
T KOG1013|consen 299 AYKKVALSVGDYDIGKSNDSIGGSMLGG--YRRGEVHKHWGRC 339 (362)
T ss_pred hcceEEEeecccCCCcCccCCCcccccc--cccchhhcCcccc
Confidence 6789999999984 688898755533 3445555566544
No 179
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=97.42 E-value=0.0012 Score=82.76 Aligned_cols=119 Identities=19% Similarity=0.219 Sum_probs=84.0
Q ss_pred HHHHHHHHhhcc-----EEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCc
Q 001126 844 TAYVKAIRSAQH-----FIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGA 918 (1149)
Q Consensus 844 ~ayl~aI~~Ak~-----fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~aira~rgv~V~IVlP~~Peg~p~~~ 918 (1149)
...++.|++|.+ .|.|+- |-+.+. ..|+.+|.+| +++|++|.|++-...-.+ ++.
T Consensus 342 ~~v~~~i~~Aa~DP~V~~Ik~tl-Yr~~~~----------------s~ii~aL~~A--a~~Gk~V~v~veLkArfd-e~~ 401 (672)
T TIGR03705 342 DPVVEFLRQAAEDPDVLAIKQTL-YRTSKD----------------SPIIDALIEA--AENGKEVTVVVELKARFD-EEA 401 (672)
T ss_pred HHHHHHHHHHhcCCCceEEEEEE-EEecCC----------------cHHHHHHHHH--HHcCCEEEEEEEehhhcc-chh
Confidence 457889999998 899976 544432 1467777776 468999999998533111 111
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCcccce
Q 001126 919 ATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIY 998 (1149)
Q Consensus 919 s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~Lr~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iY 998 (1149)
+ + ...++|.++|+++.|. + ....
T Consensus 402 n----i------------~wa~~le~aG~~viyg---------~--------------------------------~~~k 424 (672)
T TIGR03705 402 N----I------------RWARRLEEAGVHVVYG---------V--------------------------------VGLK 424 (672)
T ss_pred h----H------------HHHHHHHHcCCEEEEc---------C--------------------------------CCee
Confidence 1 2 2356899999988641 1 0247
Q ss_pred eeeEEEEEeC-------eEEEEcccccccCCCCCCCCcceEEEEeCcchh
Q 001126 999 VHSKGMIVDD-------EYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1041 (1149)
Q Consensus 999 VHSKlmIVDD-------~~viIGSANiN~RSm~G~~DsEiav~i~dp~~~ 1041 (1149)
+|+|+|+||+ +++.||+.|+|...-. .=+++++...+++.+
T Consensus 425 ~H~K~~li~r~~~~~~~~y~~igTgN~n~~ta~--~y~D~~l~t~~~~i~ 472 (672)
T TIGR03705 425 THAKLALVVRREGGELRRYVHLGTGNYHPKTAR--LYTDLSLFTADPEIG 472 (672)
T ss_pred eeeEEEEEEEeeCCceEEEEEecCCCCCCcccc--cccceeEEEeChHHH
Confidence 8999999997 4799999999999765 568888887777643
No 180
>PF13918 PLDc_3: PLD-like domain
Probab=97.39 E-value=0.00058 Score=71.78 Aligned_cols=57 Identities=23% Similarity=0.311 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHHHH-hcCCeEEEEE
Q 001126 546 CWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKS-QEGVRVLLLV 604 (1149)
Q Consensus 546 ~f~al~eAI~~Ak~sI~I~~W~~~p~i~L~r~~~~~~g~rL~dlL~~kA-~rGVkVrILV 604 (1149)
-.++|+..|++|+++|||+-....|.+..- . ...-...|+++|++|| +|||+||+||
T Consensus 83 DldAIl~~I~~A~~fI~IsVMdY~P~~~~~-~-~~~YWP~ID~ALR~AA~~R~V~VRlLI 140 (177)
T PF13918_consen 83 DLDAILSVIDSAKKFIYISVMDYLPTSRYS-K-PNRYWPVIDDALRRAAIERGVKVRLLI 140 (177)
T ss_pred HHHHHHHHHHhHhheEEEEEeecCCeeecC-C-CCCcchhHHHHHHHHHHHcCCeEEEEE
Confidence 368999999999999999998888844322 2 1235678999999987 8999999998
No 181
>PLN02866 phospholipase D
Probab=97.34 E-value=0.00075 Score=86.22 Aligned_cols=60 Identities=18% Similarity=0.288 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEe
Q 001126 841 SIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVI 907 (1149)
Q Consensus 841 sI~~ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~aira~rgv~V~IVl 907 (1149)
....+++++|++||++|||+.=.|-+..+.+... ...++..+...|.+| |++||+|+||+
T Consensus 344 dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~-----~D~~g~RL~~lL~rK--AkrGVkVrVLL 403 (1068)
T PLN02866 344 AAFEAIASAIENAKSEIFITGWWLCPELYLRRPF-----HDHESSRLDSLLEAK--AKQGVQIYILL 403 (1068)
T ss_pred HHHHHHHHHHHhcccEEEEEEccCCceEEEEecC-----CCchHHHHHHHHHHH--HHCCCEEEEEE
Confidence 6789999999999999999543333222211100 001244556666654 67899999985
No 182
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.30 E-value=0.00014 Score=90.65 Aligned_cols=120 Identities=20% Similarity=0.247 Sum_probs=91.3
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEe-eeeeecCCCCCeeceEEEEEccCC-CceEE
Q 001126 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVG-RTFVISNSEDPVWQQHFYVPVAHS-AAEVH 426 (1149)
Q Consensus 349 L~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~-rTkVi~nt~nPvWNE~F~f~v~~~-~~~L~ 426 (1149)
.+|.|.+|.+|...|.+|. .||||+|.++++... ++.-+.+|+||++++-|.+.+.-+ +..+.
T Consensus 615 vrVyvv~A~~L~p~D~ng~---------------adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~ 679 (1105)
T KOG1326|consen 615 VRVYVVEAFSLQPSDGNGD---------------ADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLI 679 (1105)
T ss_pred EEEEEEEeeeccccCCCCC---------------cCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcce
Confidence 7899999999999999987 899999999997753 788899999999999999998777 47799
Q ss_pred EEEEEccCCC-CcceeeEEEeceeeccCCceeeeEeeccC-CCCCCCCCceeEEEEEeeccccccccc
Q 001126 427 FFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVLNG-SGKPCKPGATLTLSIQYTPMERLSFYH 492 (1149)
Q Consensus 427 ~~V~D~D~~~-ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~-~Gk~~~~~g~L~L~L~f~p~~~~~~~~ 492 (1149)
++|+|+|..+ |+.||++.|.++ .+|+...+. .|.. ..-......+++.+......|.
T Consensus 680 v~vyd~D~~~~d~~iget~iDLE--------nR~~T~~~a~cgla-q~y~v~g~n~W~d~~~ps~iL~ 738 (1105)
T KOG1326|consen 680 VEVYDHDLEAQDEKIGETTIDLE--------NRWLTRHRARCGLA-QTYCVSGANIWRDRMDPSQILK 738 (1105)
T ss_pred eEEEEeecccccchhhceehhhh--------hcccCcCCcccCcc-ceeeeeccccccCccCHHHHHH
Confidence 9999999955 999999999886 245555443 3332 2222444455555554444443
No 183
>PLN02964 phosphatidylserine decarboxylase
Probab=97.17 E-value=0.0003 Score=87.14 Aligned_cols=102 Identities=15% Similarity=0.244 Sum_probs=77.9
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCCC-c
Q 001126 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA-A 423 (1149)
Q Consensus 345 lhGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~~-~ 423 (1149)
..|.+.|+|++|+ |++ .|+|..+-.-|.++.||.+.++|.||+|||+..|.|.... .
T Consensus 52 ~~~~~~~~~~~~~----~~~------------------~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~ 109 (644)
T PLN02964 52 FSGIALLTLVGAE----MKF------------------KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPH 109 (644)
T ss_pred ccCeEEEEeehhh----hcc------------------CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcc
Confidence 4578999999997 443 4776655444555559999999999999999988886554 4
Q ss_pred eEEEEEEEccC-CCCcceeeEEEeceeeccCCceee--eEeeccCCCC
Q 001126 424 EVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEG--TYPVLNGSGK 468 (1149)
Q Consensus 424 ~L~~~V~D~D~-~~ddfIG~v~Ipl~~L~~G~~~~~--W~pL~~~~Gk 468 (1149)
..+|.|+|.+. ..++++|.+.+++.++...+..+. -|.+++++|.
T Consensus 110 ~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgd 157 (644)
T PLN02964 110 LARISVFETNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSS 157 (644)
T ss_pred eEEEEEEecCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCC
Confidence 56999999998 568999999999988875543222 3778887764
No 184
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=97.07 E-value=0.00043 Score=51.01 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=22.5
Q ss_pred cccccceEEecCCCCCCCccEEEEEcccccCCC
Q 001126 663 YTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDG 695 (1149)
Q Consensus 663 ~rHHQKiVVVD~~~~~~~r~~vAFVGGiNL~dg 695 (1149)
.++|+|++|||++ .+|+||.|++..
T Consensus 3 ~~~H~K~~v~D~~--------~~~iGs~N~~~~ 27 (28)
T smart00155 3 GVLHTKLMIVDDE--------IAYIGSANLDGR 27 (28)
T ss_pred CcEEeEEEEEcCC--------EEEEeCccCCCC
Confidence 4689999999996 999999999874
No 185
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.00022 Score=80.11 Aligned_cols=125 Identities=18% Similarity=0.186 Sum_probs=88.0
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC-----EEEeeeeeecCCCCCeeceEEEEE--ccC
Q 001126 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-----AVVGRTFVISNSEDPVWQQHFYVP--VAH 420 (1149)
Q Consensus 348 tL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g-----~~~~rTkVi~nt~nPvWNE~F~f~--v~~ 420 (1149)
.|+.+|..|++|..+|+.+. .|||++..+.. .. -||++..+++||.|||+-... ..+
T Consensus 94 ~~~~tl~~a~~lk~~~~~~~---------------~d~~~~~~llpga~kl~s-lr~~t~~n~lN~~w~etev~~~i~~~ 157 (362)
T KOG1013|consen 94 MLDTTLDRAKGLKPMDINGL---------------ADPYVKLHLLPGAGKLNS-LRTKTTRNTLNPEWNETEVYEGITDD 157 (362)
T ss_pred hcceeechhcccchhhhhhh---------------cchHHhhhcccchhhhhh-hhHHhhccCcCcceeccceecccccc
Confidence 48999999999999999887 79999998852 22 389999999999999865544 333
Q ss_pred C--CceEEEEEEEccC-CCCcceeeEEEeceeeccCC--ceeeeEeeccC----CCCCCCCCceeEEEEEeeccccc
Q 001126 421 S--AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGG--KVEGTYPVLNG----SGKPCKPGATLTLSIQYTPMERL 488 (1149)
Q Consensus 421 ~--~~~L~~~V~D~D~-~~ddfIG~v~Ipl~~L~~G~--~~~~W~pL~~~----~Gk~~~~~g~L~L~L~f~p~~~~ 488 (1149)
. ...+++.|.|.+. ..++++|+..+++..|.+.. ....|+.-.-+ +.......|.+.+++.|......
T Consensus 158 ~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~~ 234 (362)
T KOG1013|consen 158 DTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTTPG 234 (362)
T ss_pred hhhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCCCc
Confidence 3 2567788888877 45899999999998887532 22233322111 11112345678888887665544
No 186
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=96.82 E-value=0.0071 Score=68.03 Aligned_cols=162 Identities=19% Similarity=0.211 Sum_probs=95.6
Q ss_pred cCCeeEecccccCCCCCCCcccccCCCccchhhHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHH
Q 001126 513 KGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRS 592 (1149)
Q Consensus 513 ~Gn~V~ly~dg~~~~~~~~~i~l~~g~~y~~~~~f~al~eAI~~Ak~sI~I~~W~~~p~i~L~r~~~~~~g~rL~dlL~~ 592 (1149)
.-.+|++|..-. ....|.| -+.+-+.|.+|++-|-|..=.| .| ..-|.|||.+
T Consensus 117 g~Tr~~vy~qPp--~~~~p~I-------------KE~vR~~I~~A~kVIAIVMD~F-------TD-----~dIf~DLleA 169 (284)
T PF07894_consen 117 GVTRATVYFQPP--KDGQPHI-------------KEVVRRMIQQAQKVIAIVMDVF-------TD-----VDIFCDLLEA 169 (284)
T ss_pred CCceEEEEeCCC--CCCCCCH-------------HHHHHHHHHHhcceeEEEeecc-------cc-----HHHHHHHHHH
Confidence 337888887642 2333443 5778889999999999886533 33 2567776666
Q ss_pred HHhcCCeEEEEEecCCCcccccccccccccccccHHHHHHhccCCcEEEEccCccccccccccccccccccccccceEEe
Q 001126 593 KSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIV 672 (1149)
Q Consensus 593 kA~rGVkVrILVwD~~gs~~~~g~k~~g~m~~~~~~t~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~rHHQKiVVV 672 (1149)
+-+|||-|+||+ |......++. ...-+.. .... -.|++|+..... .+.......+-...++|+++|
T Consensus 170 a~kR~VpVYiLL-D~~~~~~Fl~--Mc~~~~v----~~~~--~~nmrVRsv~G~-----~y~~rsg~k~~G~~~eKF~lv 235 (284)
T PF07894_consen 170 ANKRGVPVYILL-DEQNLPHFLE--MCEKLGV----NLQH--LKNMRVRSVTGC-----TYYSRSGKKFKGQLKEKFMLV 235 (284)
T ss_pred HHhcCCcEEEEe-chhcChHHHH--HHHHCCC----Chhh--cCCeEEEEecCC-----eeecCCCCeeeCcccceeEEE
Confidence 669999999998 8765433221 0000000 0111 234555432110 010000011235689999999
Q ss_pred cCCCCCCCccEEEEEcccccCCCCCCCCCCCccccccccCCCCCCCCccccCCCCCCCCCCeeeeeeEEcCHHHHHHHHH
Q 001126 673 DADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTQGNTTGCPREPWHDLHSKIDGPAAYDVLTN 752 (1149)
Q Consensus 673 D~~~~~~~r~~vAFVGGiNL~dgRwDt~~H~l~~~~~~~~~~Dy~np~~~~~~~~~~pr~PWHDv~vrI~GPaa~Dl~~~ 752 (1149)
|++ .+..|.--+++--+ .-| +-+-..++|.+|...-+.
T Consensus 236 D~~--------~V~~GSYSFtWs~~--~~~--------------------------------r~~~~~~tGq~Ve~FD~E 273 (284)
T PF07894_consen 236 DGD--------KVISGSYSFTWSSS--RVH--------------------------------RNLVTVLTGQIVESFDEE 273 (284)
T ss_pred ecc--------cccccccceeeccc--ccc--------------------------------cceeEEEeccccchHhHH
Confidence 997 78888776665311 101 235677999999999998
Q ss_pred HHHHH
Q 001126 753 FEERW 757 (1149)
Q Consensus 753 F~qrW 757 (1149)
|..-.
T Consensus 274 FR~Ly 278 (284)
T PF07894_consen 274 FRELY 278 (284)
T ss_pred HHHHH
Confidence 87643
No 187
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.0014 Score=74.85 Aligned_cols=113 Identities=18% Similarity=0.212 Sum_probs=85.8
Q ss_pred eeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCeeceEEEEE
Q 001126 342 VLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVP 417 (1149)
Q Consensus 342 ~~LlhGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~rTkVi~nt~nPvWNE~F~f~ 417 (1149)
++=-.|.|+|.|++|++|......+. .++|||+|++-. ....+|+...+|+.|.+-++..|.
T Consensus 264 ~~d~~g~l~vEii~ar~l~~k~~~k~--------------~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~ 329 (405)
T KOG2060|consen 264 LMDSKGDLEVEIIRARGLVVKPGSKS--------------LPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFD 329 (405)
T ss_pred hhcccCceeEEEEecccccccCCccc--------------ccCceeEEEEcCCCceecccccccccccCchhhhhhhhhc
Confidence 33345789999999999986543322 289999999843 122499999999999877888888
Q ss_pred ccCCCceEEEEEEE-ccC-CCCcceeeEEEeceeeccCC-ceeeeEeeccCCCC
Q 001126 418 VAHSAAEVHFFVKD-SDV-VGSELIGTVAIPVEQIYSGG-KVEGTYPVLNGSGK 468 (1149)
Q Consensus 418 v~~~~~~L~~~V~D-~D~-~~ddfIG~v~Ipl~~L~~G~-~~~~W~pL~~~~Gk 468 (1149)
-.-+...|.++||- +.. ..+.|+|.+.|-+.+|-... ..-+||+|.....+
T Consensus 330 ~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgsssl 383 (405)
T KOG2060|consen 330 QSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSSSL 383 (405)
T ss_pred cCCCccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCCccC
Confidence 77777899999984 333 34679999999999998665 66799999865433
No 188
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=96.59 E-value=0.15 Score=58.95 Aligned_cols=137 Identities=19% Similarity=0.217 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHhc-----cceEEEEeeccceeeEEeCCCCchHHHHHHHHHHHHhcCCeEEEEEecCCCcccccccccc
Q 001126 545 KCWYDICNAISQAQ-----RLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMD 619 (1149)
Q Consensus 545 ~~f~al~eAI~~Ak-----~sI~I~~W~~~p~i~L~r~~~~~~g~rL~dlL~~kA~rGVkVrILVwD~~gs~~~~g~k~~ 619 (1149)
+.|+.+++.|++|- .+|.|+-| |-+ ....|.++|++||+.|-+|.++| . ...+ .+
T Consensus 18 ~sf~~vv~fl~eAA~DP~V~aIk~TLY---------R~a---~~S~iv~aLi~AA~nGK~Vtv~v-E-LkAR------FD 77 (352)
T PF13090_consen 18 ESFDPVVDFLREAAEDPDVLAIKITLY---------RVA---SNSPIVNALIEAAENGKQVTVLV-E-LKAR------FD 77 (352)
T ss_dssp B-TCHHHHHHHHHCC-TTEEEEEEEES---------SS----TT-HHHHHHHHHHHTT-EEEEEE-S-TTSS------ST
T ss_pred cccHHHHHHHHHHhcCCCccEEEEEEE---------ecC---CCCHHHHHHHHHHHcCCEEEEEE-E-Eecc------cc
Confidence 57888999999884 46777766 432 24789999999999999999998 2 1111 11
Q ss_pred cccccccHHHHHHhccCCcEEEEccCccccccccccccccccccccccceEEecCCCCCCCccEEEEEcccccCCCCCCC
Q 001126 620 GVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDN 699 (1149)
Q Consensus 620 g~m~~~~~~t~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~rHHQKiVVVD~~~~~~~r~~vAFVGGiNL~dgRwDt 699 (1149)
.. .+-.+.+.|+.+|++|..--+ .+--|-|+++|=-+..+ +-+..+++|-=|....
T Consensus 78 Ee---~Ni~Wa~~Le~aGv~ViyG~~----------------glKvHaK~~lI~R~e~~-~~~~Y~hlgTGNyNe~---- 133 (352)
T PF13090_consen 78 EE---NNIHWAKRLEEAGVHVIYGVP----------------GLKVHAKICLIVRREGG-GLRRYAHLGTGNYNEK---- 133 (352)
T ss_dssp TC---CCCCCCHHHHHCT-EEEE--T----------------T-EE--EEEEEEEEETT-EEEEEEEEESS-SSTT----
T ss_pred HH---HHhHHHhhHHhcCeEEEcCCC----------------ChhheeeEEEEEEEeCC-cEEEEEEEcCCCcCcc----
Confidence 11 011355678899999976321 12359999999665322 2345777766555442
Q ss_pred CCCCccccccccCCCCCCCCccccCCCCCCCCCCeeeeeeEEcCH-HHHHHHHHHHH
Q 001126 700 PHHPLFRTLQTLHKDDYHNPTFTQGNTTGCPREPWHDLHSKIDGP-AAYDVLTNFEE 755 (1149)
Q Consensus 700 ~~H~l~~~~~~~~~~Dy~np~~~~~~~~~~pr~PWHDv~vrI~GP-aa~Dl~~~F~q 755 (1149)
+. .-+-|+.+.-.-+ .+.|+...|..
T Consensus 134 -----------------------------TA-r~YtD~~l~Ta~~~i~~D~~~~F~~ 160 (352)
T PF13090_consen 134 -----------------------------TA-RIYTDLSLFTADPEIGADVAKLFNY 160 (352)
T ss_dssp -----------------------------HC-CCEEEEEEEE--HHHHHHHHHHHHH
T ss_pred -----------------------------ch-hheecceeecCCHHHHHHHHHHHHH
Confidence 01 1356888776666 68999998853
No 189
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=96.15 E-value=0.023 Score=64.04 Aligned_cols=131 Identities=21% Similarity=0.214 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCch
Q 001126 840 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAA 919 (1149)
Q Consensus 840 ~sI~~ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~aira~rgv~V~IVlP~~Peg~p~~~s 919 (1149)
.+|.+...++|++|++-|=|..--|.- .+|..-|.+|.. +|+|-|||++... +
T Consensus 133 p~IKE~vR~~I~~A~kVIAIVMD~FTD------------------~dIf~DLleAa~-kR~VpVYiLLD~~--------~ 185 (284)
T PF07894_consen 133 PHIKEVVRRMIQQAQKVIAIVMDVFTD------------------VDIFCDLLEAAN-KRGVPVYILLDEQ--------N 185 (284)
T ss_pred CCHHHHHHHHHHHhcceeEEEeecccc------------------HHHHHHHHHHHH-hcCCcEEEEechh--------c
Confidence 379999999999999999999988873 467777777742 7899999999762 2
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCccccee
Q 001126 920 TQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYV 999 (1149)
Q Consensus 920 ~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~Lr~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iYV 999 (1149)
.+-++ +.-.+.++.... +-++|-|-.- +. +. .++..+.+.+-+
T Consensus 186 ~~~Fl---------------~Mc~~~~v~~~~-------~~nmrVRsv~-G~------------~y--~~rsg~k~~G~~ 228 (284)
T PF07894_consen 186 LPHFL---------------EMCEKLGVNLQH-------LKNMRVRSVT-GC------------TY--YSRSGKKFKGQL 228 (284)
T ss_pred ChHHH---------------HHHHHCCCChhh-------cCCeEEEEec-CC------------ee--ecCCCCeeeCcc
Confidence 33222 222334443321 0111111110 00 00 011122345678
Q ss_pred eeEEEEEeCeEEEEcccccccCCCCCCCCcceEEEEe
Q 001126 1000 HSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAY 1036 (1149)
Q Consensus 1000 HSKlmIVDD~~viIGSANiN~RSm~G~~DsEiav~i~ 1036 (1149)
+.|.||||.+.|+-||--+..-|-. .|.-+..++.
T Consensus 229 ~eKF~lvD~~~V~~GSYSFtWs~~~--~~r~~~~~~t 263 (284)
T PF07894_consen 229 KEKFMLVDGDKVISGSYSFTWSSSR--VHRNLVTVLT 263 (284)
T ss_pred cceeEEEecccccccccceeecccc--cccceeEEEe
Confidence 9999999999999999999988776 6666666653
No 190
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=96.10 E-value=0.002 Score=80.81 Aligned_cols=99 Identities=23% Similarity=0.283 Sum_probs=76.8
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEcc--------
Q 001126 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVA-------- 419 (1149)
Q Consensus 348 tL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~-------- 419 (1149)
.|++.|+.|+.|..+|..+. +|||+.|.+.++.. .|-++.+|+||.||++..|.-.
T Consensus 207 ~lR~yiyQar~L~a~dk~~~---------------sdp~a~v~f~~qs~-~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~ 270 (1105)
T KOG1326|consen 207 PLRSYIYQARALGAPDKDDE---------------SDPDAAVEFCGQSK-ETEVVPGTLNPTWDQTIIFDEVEIYGEAHL 270 (1105)
T ss_pred hhHHHHHHHHhhcCCCcccC---------------CCchhhhhcccccc-eeEeecCcCCCCccceeeccceeecCccch
Confidence 37888889999988777665 89999999988875 9999999999999999887521
Q ss_pred --CCCceEEEEEEEccCCC-CcceeeEEEeceeeccCCceeeeEeec
Q 001126 420 --HSAAEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1149)
Q Consensus 420 --~~~~~L~~~V~D~D~~~-ddfIG~v~Ipl~~L~~G~~~~~W~pL~ 463 (1149)
..-..+.|+|+|.|..+ ++|+|.......-+.. ...-.|+++.
T Consensus 271 ~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~ 316 (1105)
T KOG1326|consen 271 VLKNPPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTM 316 (1105)
T ss_pred hhcCCCeEEEEeehhhhhchHHhhcccccceEEEec-CCccceEEee
Confidence 11256889999999854 8899998775443333 2345799995
No 191
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=96.05 E-value=0.0048 Score=57.47 Aligned_cols=95 Identities=12% Similarity=0.192 Sum_probs=67.1
Q ss_pred EEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEE--EEECCEEEeeeeeecCCCCCeeceEEEEEccCC---CceE
Q 001126 351 IWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVT--IAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS---AAEV 425 (1149)
Q Consensus 351 VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~--V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~---~~~L 425 (1149)
|+|+.+++|.-...-|. .+.-|++ +.+.+....||.+.+...||+++|+|.|.+.-. .-.|
T Consensus 3 itv~~c~d~s~~~~~~e--------------~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L 68 (103)
T cd08684 3 ITVLKCKDLSWPSSCGE--------------NPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRL 68 (103)
T ss_pred EEEEEecccccccccCc--------------CCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEE
Confidence 78899999874432222 1233443 344555556999999999999999999987643 3467
Q ss_pred EEEEEEccCCCCcceeeEEEeceeeccCCceeeeEe
Q 001126 426 HFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYP 461 (1149)
Q Consensus 426 ~~~V~D~D~~~ddfIG~v~Ipl~~L~~G~~~~~W~p 461 (1149)
.|.|+. .+-+.+.||.+.+.+.++-. +..++|.+
T Consensus 69 ~fsv~~-~~~RKe~iG~~sL~l~s~ge-eE~~HW~e 102 (103)
T cd08684 69 VFKIQT-QTPRKRTIGECSLSLRTLST-QETDHWLE 102 (103)
T ss_pred EEEeec-cCCccceeeEEEeecccCCH-HHhhhhhc
Confidence 778877 45678899999999987753 34567764
No 192
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=95.65 E-value=0.81 Score=56.49 Aligned_cols=101 Identities=18% Similarity=0.172 Sum_probs=65.1
Q ss_pred cchhhHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHHHHhcCCeEEEEEecCCCccccccccccc
Q 001126 541 YVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDG 620 (1149)
Q Consensus 541 y~~~~~f~al~eAI~~Ak~sI~I~~W~~~p~i~L~r~~~~~~g~rL~dlL~~kA~rGVkVrILVwD~~gs~~~~g~k~~g 620 (1149)
|.|=+.|+.+++.|++|-.-=.+..- .+.|.|.+. ...|.++|.+||+.|-+|-+|| +...+ .+.
T Consensus 348 hHPYeSF~~Vv~fl~qAA~DP~VLAI----KqTLYRt~~---dSpIV~ALi~AA~nGKqVtvlV--ELkAR------FDE 412 (696)
T COG0855 348 HHPYESFEPVVEFLRQAAADPDVLAI----KQTLYRTSK---DSPIVRALIDAAENGKQVTVLV--ELKAR------FDE 412 (696)
T ss_pred ECchhhhHHHHHHHHHhhcCCCeEEE----EEEEEecCC---CCHHHHHHHHHHHcCCeEEEEE--EEhhh------cCh
Confidence 44457899999999999642111110 233556543 3689999999999999999998 11110 010
Q ss_pred ccccccHHHHHHhccCCcEEEEccCccccccccccccccccccccccceEEecCC
Q 001126 621 VMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDAD 675 (1149)
Q Consensus 621 ~m~~~~~~t~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~rHHQKiVVVD~~ 675 (1149)
. .+-.+.+.|+.+||+|++--. .+--|-|+++|=-+
T Consensus 413 E---~NI~WAk~LE~AGvhVvyG~~----------------glKtHAKm~lVvRr 448 (696)
T COG0855 413 E---ANIHWAKRLERAGVHVVYGVV----------------GLKTHAKMLLVVRR 448 (696)
T ss_pred h---hhhHHHHHHHhCCcEEEeccc----------------ceeeeeeEEEEEEe
Confidence 0 112467778899999986311 23469999888654
No 193
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=95.61 E-value=0.01 Score=68.60 Aligned_cols=118 Identities=17% Similarity=0.213 Sum_probs=85.2
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCeeceEEEEEccCC--
Q 001126 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS-- 421 (1149)
Q Consensus 348 tL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~rTkVi~nt~nPvWNE~F~f~v~~~-- 421 (1149)
.|++.|.++.+++.... ..+ .|-||++.+.- ....||.||++|..|.++|.|.+.+...
T Consensus 368 elel~ivrg~~~pvp~g-p~h--------------ld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~ 432 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPGG-PMH--------------LDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPG 432 (523)
T ss_pred HhHHHHhhcccCCCCCC-chh--------------HHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCc
Confidence 36777777777653321 111 47788777632 2234999999999999999999988652
Q ss_pred ----------CceEEEEEEEccC--CCCcceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEEEEEee
Q 001126 422 ----------AAEVHFFVKDSDV--VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1149)
Q Consensus 422 ----------~~~L~~~V~D~D~--~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f~ 483 (1149)
...+.|+|+.+.. -+|.|+|.+.|-++.|.....++..++|.+ |++ ..+|+|.++++..
T Consensus 433 ~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~D--GRK-~vGGkLevKvRiR 503 (523)
T KOG3837|consen 433 LNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKD--GRK-AVGGKLEVKVRIR 503 (523)
T ss_pred ccHHHHHHHHhcCeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccc--ccc-ccCCeeEEEEEEe
Confidence 1348899998776 358899999999998887777778899953 443 2457888888865
No 194
>PLN02352 phospholipase D epsilon
Probab=95.44 E-value=0.045 Score=69.04 Aligned_cols=61 Identities=21% Similarity=0.256 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHHhccceEEEEeeccceeeEEeCCC-----CchHHHHHHHHHHH--HhcCCeEEEEE
Q 001126 544 GKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDAS-----PALDCTLGELLRSK--SQEGVRVLLLV 604 (1149)
Q Consensus 544 ~~~f~al~eAI~~Ak~sI~I~~W~~~p~i~L~r~~~-----~~~g~rL~dlL~~k--A~rGVkVrILV 604 (1149)
.+...+.++||++|||.|||+.=-|....+.+..+. .-.+..|.+.|.+| +.++-+|+|++
T Consensus 452 rSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~kI~~kir~~e~f~V~IVi 519 (758)
T PLN02352 452 RSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVYILI 519 (758)
T ss_pred hHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 356899999999999999998532322222222211 12456777777776 45668888876
No 195
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=95.35 E-value=0.068 Score=59.10 Aligned_cols=49 Identities=27% Similarity=0.282 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHHHHhcCCeEEEEEec
Q 001126 545 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWD 606 (1149)
Q Consensus 545 ~~f~al~eAI~~Ak~sI~I~~W~~~p~i~L~r~~~~~~g~rL~dlL~~kA~rGVkVrILVwD 606 (1149)
...+.+.+.|++|+++|+|..|. ..-..|.+.|++|.+|||+|.|+++.
T Consensus 10 ~I~~~i~elI~~Ae~eI~is~~~-------------~~l~~l~~~L~~a~~rGV~V~li~~~ 58 (233)
T PF11495_consen 10 TILERIRELIENAESEIYISIPP-------------EFLEELRDELEEAVDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHC-SSEEEEEE-G-------------GGHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHhheEEEEEcCH-------------HHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 45789999999999999999882 13478999999999999999999965
No 196
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=95.17 E-value=0.034 Score=67.22 Aligned_cols=98 Identities=27% Similarity=0.447 Sum_probs=70.2
Q ss_pred EEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC---C--EEEeeeeeecCCCCCeeceEEEEEcc-----CCC
Q 001126 353 IYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA---G--AVVGRTFVISNSEDPVWQQHFYVPVA-----HSA 422 (1149)
Q Consensus 353 VieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~---g--~~~~rTkVi~nt~nPvWNE~F~f~v~-----~~~ 422 (1149)
.++|++|.+.|++++ +|||..+.-- + ..+.+|.+++++++|.|-+ |.+.+. +..
T Consensus 142 ~~~~~~ld~kd~f~k---------------sd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~ 205 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSK---------------SDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGN 205 (529)
T ss_pred eeeeeecCccccccc---------------CCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCC
Confidence 445778888888876 8999887542 2 3446999999999999985 444432 334
Q ss_pred ceEEEEEEEccCCCC-cceeeEEEeceeeccCCceeeeEeeccCCC
Q 001126 423 AEVHFFVKDSDVVGS-ELIGTVAIPVEQIYSGGKVEGTYPVLNGSG 467 (1149)
Q Consensus 423 ~~L~~~V~D~D~~~d-dfIG~v~Ipl~~L~~G~~~~~W~pL~~~~G 467 (1149)
..+.+.|+|++..++ ++||++..+++++.. .....-+.+.++++
T Consensus 206 ~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~-~~~~~~~~~~~~~~ 250 (529)
T KOG1327|consen 206 RPIQIECYDYDSNGKHDLIGKFQTTLSELQE-PGSPNQIMLINPKK 250 (529)
T ss_pred CceEEEEeccCCCCCcCceeEecccHHHhcc-cCCcccccccChhh
Confidence 778999999999665 899999999998874 22223344444443
No 197
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=95.14 E-value=0.34 Score=49.08 Aligned_cols=119 Identities=22% Similarity=0.336 Sum_probs=79.6
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEE--Eeeeeeec-CCCCCeeceEEEEEccC---C
Q 001126 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAV--VGRTFVIS-NSEDPVWQQHFYVPVAH---S 421 (1149)
Q Consensus 348 tL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~--~~rTkVi~-nt~nPvWNE~F~f~v~~---~ 421 (1149)
.+.|+|.+..+++.. . .-.||+...++.. .+.|.... .+..-.|||+|.+.+.- .
T Consensus 8 ~~~l~i~~l~~~p~~---~----------------~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~ 68 (143)
T PF10358_consen 8 QFDLTIHELENLPSS---N----------------GKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDK 68 (143)
T ss_pred EEEEEEEEeECcCCC---C----------------CEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcC
Confidence 378999999999851 1 2345666555543 33444433 36667999999988642 1
Q ss_pred ------CceEEEEEEEccCCCC-cceeeEEEeceeeccC--CceeeeEeeccCCCCCCCCCceeEEEEEeecccccc
Q 001126 422 ------AAEVHFFVKDSDVVGS-ELIGTVAIPVEQIYSG--GKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLS 489 (1149)
Q Consensus 422 ------~~~L~~~V~D~D~~~d-dfIG~v~Ipl~~L~~G--~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f~p~~~~~ 489 (1149)
...+.|.|+.....+. ..+|.+.|.|.+.... .....-++|... + +..+.|+|+|++.+...++
T Consensus 69 k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--~--~~~a~L~isi~~~~~~~~~ 141 (143)
T PF10358_consen 69 KSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--K--KSNATLSISISLSELREDP 141 (143)
T ss_pred CCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--C--CCCcEEEEEEEEEECccCC
Confidence 2468888888754444 5999999999999863 445556777433 1 2346899999988765543
No 198
>PF13918 PLDc_3: PLD-like domain
Probab=95.05 E-value=0.21 Score=52.92 Aligned_cols=55 Identities=24% Similarity=0.410 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhccEEEEEEeeeecCC------CCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCC
Q 001126 843 HTAYVKAIRSAQHFIYIENQYFIGSS------YNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWP 911 (1149)
Q Consensus 843 ~~ayl~aI~~Ak~fIYIENQYFi~~~------~~w~~~~~~g~~n~I~~~ial~Ia~aira~rgv~V~IVlP~~P 911 (1149)
.+|.+..|..|++||||+=--++|.. ..|+ .|-.+|.+|+ -.|||+|++++..|.
T Consensus 84 ldAIl~~I~~A~~fI~IsVMdY~P~~~~~~~~~YWP-------------~ID~ALR~AA-~~R~V~VRlLIS~W~ 144 (177)
T PF13918_consen 84 LDAILSVIDSAKKFIYISVMDYLPTSRYSKPNRYWP-------------VIDDALRRAA-IERGVKVRLLISCWK 144 (177)
T ss_pred HHHHHHHHHhHhheEEEEEeecCCeeecCCCCCcch-------------hHHHHHHHHH-HHcCCeEEEEEeecC
Confidence 58999999999999999977666642 1344 2223333322 268999999999985
No 199
>cd00137 PI-PLCc Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic a
Probab=94.92 E-value=0.0048 Score=69.88 Aligned_cols=56 Identities=18% Similarity=0.118 Sum_probs=46.9
Q ss_pred CCcccCCCCCcc-cCccccCCCC---------cCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceE
Q 001126 289 GGFYGYPNDSFS-SYPERAYLGM---------IDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGN 348 (1149)
Q Consensus 289 ~~~~~~~~~~~~-~~~~~~~~~r---------~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~LlhGt 348 (1149)
.+|..|+++.|+ +| |++.| +|||||+|..+|...+ .||||||+ |+.++++.|..|.
T Consensus 203 ~~~~~~n~~~l~~ny---psgtr~~~~~~~~a~~snn~~p~~~w~~~~-~g~qiValdfqt~~~~~~ln~~~ 270 (274)
T cd00137 203 VQFVDYNKNQLSRNY---PSGTSGGTAWYYYAMDSNNYMPQMFWNANP-AGCGIVILDFQTMDLPMQQYMAV 270 (274)
T ss_pred HHHHhcCcceEEEEc---cCccCCCCcchhhHhhcCccChHHHhcccc-CCceEEEeeCcCCCccHHHHhhh
Confidence 457888888999 99 99999 9999999998888543 49999999 8888887766554
No 200
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=94.90 E-value=0.23 Score=57.84 Aligned_cols=120 Identities=18% Similarity=0.183 Sum_probs=91.7
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCC-------
Q 001126 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS------- 421 (1149)
Q Consensus 349 L~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~------- 421 (1149)
+.|.|++|+|.+.... -.-.+...+++... .|-.+..+..|.||.+....+...
T Consensus 2 ivl~i~egr~F~~~~~------------------~~~vv~a~~ng~~l-~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~ 62 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPR------------------HPIVVEAKFNGESL-ETDPVPHTESPQFNTELAWECDRKALKQHRL 62 (340)
T ss_pred EEEEEecccCCCCCCC------------------ccEEEEEEeCCcee-eecCCCCCCCceeecceeeeccHHHHHHhhc
Confidence 5688999999985411 35678889999887 888888899999999999887632
Q ss_pred -CceEEEEEEEccC--CCCcceeeEEEeceee---ccC--CceeeeEeeccCCCCCCCCCceeEEEEEeecccc
Q 001126 422 -AAEVHFFVKDSDV--VGSELIGTVAIPVEQI---YSG--GKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMER 487 (1149)
Q Consensus 422 -~~~L~~~V~D~D~--~~ddfIG~v~Ipl~~L---~~G--~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f~p~~~ 487 (1149)
...|+++++..|. ...+.||.+.++|..+ ..+ .....||+|++.+++..+...+|.|.|.......
T Consensus 63 ~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 63 QRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred cCCceEEEEEEecCCCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 2568899998873 4567999999999988 555 4567999999874444333457888888765544
No 201
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.67 E-value=0.24 Score=51.71 Aligned_cols=108 Identities=15% Similarity=0.165 Sum_probs=68.2
Q ss_pred eeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEEe---eeeeecCCCCCeeceEEEE
Q 001126 342 VLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVG---RTFVISNSEDPVWQQHFYV 416 (1149)
Q Consensus 342 ~~LlhGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l--~g~~~~---rTkVi~nt~nPvWNE~F~f 416 (1149)
+|=+...|+|+|++++++.-.+ . +|-||++.| +++... .|+-+. ..++.|||-..|
T Consensus 3 lwd~~~~~~v~i~~~~~~~~~~---~---------------~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~f 63 (158)
T cd08398 3 LWKINSNLRIKILCATYVNVND---I---------------DKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDY 63 (158)
T ss_pred ceeCCCCeEEEEEeeccCCCCC---c---------------CeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEc
Confidence 3445667999999999987321 1 688998866 444332 344344 367999998888
Q ss_pred EccCC----CceEEEEEEEccCCC-----CcceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEEEEEeecc
Q 001126 417 PVAHS----AAEVHFFVKDSDVVG-----SELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPM 485 (1149)
Q Consensus 417 ~v~~~----~~~L~~~V~D~D~~~-----ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f~p~ 485 (1149)
++.-. .+.|.|+|++....+ ...||.+.++|- +.+|.- ..|...|.|+-.+.
T Consensus 64 pI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LF---------------d~~~~L--r~G~~~L~lW~~~~ 124 (158)
T cd08398 64 DIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLF---------------DYTDTL--VSGKMALNLWPVPH 124 (158)
T ss_pred ccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEE---------------CCCChh--hCCCEEEEEEcCCc
Confidence 75432 488999999865421 135777666553 333332 13467777775443
No 202
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=94.27 E-value=0.21 Score=63.45 Aligned_cols=63 Identities=17% Similarity=0.214 Sum_probs=37.9
Q ss_pred CCCccchhhHHHHHHHHHHHhccceEEEEeeccceeeEEeCC-----CCchHHHHHHHHHHH--HhcCCeEEEEE
Q 001126 537 RGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDA-----SPALDCTLGELLRSK--SQEGVRVLLLV 604 (1149)
Q Consensus 537 ~g~~y~~~~~f~al~eAI~~Ak~sI~I~~W~~~p~i~L~r~~-----~~~~g~rL~dlL~~k--A~rGVkVrILV 604 (1149)
.|........-.|-+.+|++|+|.|||+-=-| |-... ....+..|.+-+.+| |++--+|+|+|
T Consensus 558 ~g~~~~e~SIq~AYv~~Ir~a~hFIYIENQfF-----i~ss~~~~~~~n~v~~ela~rIv~a~ra~e~frVYIVI 627 (887)
T KOG1329|consen 558 GGINEIEDSIQNAYVKAIRNAEHFIYIENQFF-----IGSSFNWDSVLNKVGDELALRIVKAIRAGEKFRVYIVI 627 (887)
T ss_pred cCCCchHHHHHHHHHHHHHhccceEEEeeeeE-----EeeccCCCcccchHHHHHHHHHHHHHhcCCceEEEEEE
Confidence 34444444457889999999999999975222 21111 112344555555555 45557888887
No 203
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=94.22 E-value=0.47 Score=50.46 Aligned_cols=141 Identities=19% Similarity=0.285 Sum_probs=93.2
Q ss_pred hhHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHHHHhcCCeEEEEEecCCCcccccccccccccc
Q 001126 544 GKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQ 623 (1149)
Q Consensus 544 ~~~f~al~eAI~~Ak~sI~I~~W~~~p~i~L~r~~~~~~g~rL~dlL~~kA~rGVkVrILVwD~~gs~~~~g~k~~g~m~ 623 (1149)
+.....+...|+.|++...+.+| +-.++ -.-|.+.|..+..+||++|||- ++....
T Consensus 38 e~il~~Li~~l~k~~ef~IsVaF-------it~sG----~sll~~~L~d~~~Kgvkgkilt-s~Ylnf------------ 93 (198)
T COG3886 38 EKILPRLIDELEKADEFEISVAF-------ITESG----LSLLFDLLLDLVNKGVKGKILT-SDYLNF------------ 93 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEEEE-------eeCcc----HHHHHHHHHHHhcCCceEEEec-ccccCc------------
Confidence 35689999999999998887876 32332 3678889999999999999995 443221
Q ss_pred cccHHHHHHhccCCcEEEEccCccccccccccccccccccccccceEEecCCCCCCCccEEEEEcccccCCCCCCCCCCC
Q 001126 624 THDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHP 703 (1149)
Q Consensus 624 ~~~~~t~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~rHHQKiVVVD~~~~~~~r~~vAFVGGiNL~dgRwDt~~H~ 703 (1149)
+.....++.+.-.+|+++.+.-. ...+|-|-.|.-... -..|++|..||++.=.- ..
T Consensus 94 TdP~al~~Ll~~~nve~r~~~~~---------------~~~fH~KgYiFe~~~-----~~taiiGSsNlt~sALt-~n-- 150 (198)
T COG3886 94 TDPVALRKLLMLKNVELRVSTIG---------------SANFHTKGYIFEHNT-----GITAIIGSSNLTDSALT-VN-- 150 (198)
T ss_pred cCHHHHHHHHhhhccceEEEecC---------------ccccccceeEEEecc-----eEEEEEccchhhhhhcc-cC--
Confidence 11122455555566888775321 235688877754432 25899999999996321 11
Q ss_pred ccccccccCCCCCCCCccccCCCCCCCCCCee-eeeeEEcCHHHHHHHHHHHHHHHh
Q 001126 704 LFRTLQTLHKDDYHNPTFTQGNTTGCPREPWH-DLHSKIDGPAAYDVLTNFEERWRK 759 (1149)
Q Consensus 704 l~~~~~~~~~~Dy~np~~~~~~~~~~pr~PWH-Dv~vrI~GPaa~Dl~~~F~qrWn~ 759 (1149)
.-|- -+...-.|..|..+...|+..|..
T Consensus 151 ----------------------------~Ewn~k~s~~~~g~i~~~~k~~f~r~~~~ 179 (198)
T COG3886 151 ----------------------------EEWNLKVSSSKNGDIVKEVKVTFERQFQN 179 (198)
T ss_pred ----------------------------HHHHhhhccccccchHHHHHHHHHHHHHh
Confidence 1121 122334678899999999999983
No 204
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=93.47 E-value=0.52 Score=49.99 Aligned_cols=75 Identities=19% Similarity=0.280 Sum_probs=51.4
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEEe---eeeeecCCCCCeeceEEEEE
Q 001126 343 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVG---RTFVISNSEDPVWQQHFYVP 417 (1149)
Q Consensus 343 ~LlhGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l--~g~~~~---rTkVi~nt~nPvWNE~F~f~ 417 (1149)
|=.+..+.|+|+.+.+|.-.+ . ..+-||++.| +++... .|+.+.-+..+.|||.+.|+
T Consensus 4 w~~~~~f~i~i~~~~~~~~~~--~---------------~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~ 66 (173)
T cd08693 4 WDIEEKFSITLHKISNLNAAE--R---------------TMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFD 66 (173)
T ss_pred eccCCCEEEEEEEeccCccCC--C---------------CceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcc
Confidence 445567999999999997411 1 1567888765 454432 55555546779999988887
Q ss_pred ccC--C--CceEEEEEEEccC
Q 001126 418 VAH--S--AAEVHFFVKDSDV 434 (1149)
Q Consensus 418 v~~--~--~~~L~~~V~D~D~ 434 (1149)
+.- . .+.|.|+|++...
T Consensus 67 I~i~dLPr~ArLciti~~~~~ 87 (173)
T cd08693 67 INVCDLPRMARLCFAIYEVSK 87 (173)
T ss_pred cchhcCChhHeEEEEEEEecc
Confidence 543 2 4889999998653
No 205
>PLN03008 Phospholipase D delta
Probab=93.45 E-value=0.33 Score=61.92 Aligned_cols=69 Identities=17% Similarity=0.126 Sum_probs=42.4
Q ss_pred cCCCccchh-hHHHHHHHHHHHhccceEEEEeeccceeeEEeCCC-----CchHHHHHHHHHHH--HhcCCeEEEEE
Q 001126 536 DRGMSYVHG-KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDAS-----PALDCTLGELLRSK--SQEGVRVLLLV 604 (1149)
Q Consensus 536 ~~g~~y~~~-~~f~al~eAI~~Ak~sI~I~~W~~~p~i~L~r~~~-----~~~g~rL~dlL~~k--A~rGVkVrILV 604 (1149)
..|+...-+ ....+.+++|++|||.|||+.=-|-...+.+.... .-.+..|...|.+| +.++-+|+|++
T Consensus 557 ~~gk~~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IVi 633 (868)
T PLN03008 557 ECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVI 633 (868)
T ss_pred ccccccchhhhHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEE
Confidence 344443333 45789999999999999998633322222221110 12456677777776 56778888886
No 206
>PLN02270 phospholipase D alpha
Probab=92.96 E-value=0.42 Score=60.85 Aligned_cols=61 Identities=20% Similarity=0.123 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHHhccceEEEEeeccceeeEEeCC--------C-CchHHHHHHHHHHH--HhcCCeEEEEE
Q 001126 544 GKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDA--------S-PALDCTLGELLRSK--SQEGVRVLLLV 604 (1149)
Q Consensus 544 ~~~f~al~eAI~~Ak~sI~I~~W~~~p~i~L~r~~--------~-~~~g~rL~dlL~~k--A~rGVkVrILV 604 (1149)
.+...+.++||++||++|||+.=-|.....-+..+ . .-....|...|.+| +.++-+|+|++
T Consensus 498 rsI~~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIVi 569 (808)
T PLN02270 498 RSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVV 569 (808)
T ss_pred hHHHHHHHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence 46789999999999999999752222211111100 0 11345566666665 56788999887
No 207
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=91.66 E-value=1.5 Score=46.32 Aligned_cols=89 Identities=16% Similarity=0.258 Sum_probs=57.7
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEEe---eeeeec--C--CCCCeeceEEE
Q 001126 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVG---RTFVIS--N--SEDPVWQQHFY 415 (1149)
Q Consensus 345 lhGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l--~g~~~~---rTkVi~--n--t~nPvWNE~F~ 415 (1149)
....+.|+|..+.+++....... .|.||++.| +++... .|+... + ...+.|||-..
T Consensus 6 v~~~~~i~v~~~h~~~~~~~~~~---------------~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~ 70 (171)
T cd04012 6 VTDLLSVTVSSLHRIPPTWVQSF---------------EDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIE 70 (171)
T ss_pred ccccEEEEEEEeecCChHHhhcc---------------ccEEEEEEEEECCEECcCceeccccccccCccccccccceEE
Confidence 44568999999999985432211 688998876 444432 343221 1 33678999888
Q ss_pred EEccCC----CceEEEEEEEccCCC----------CcceeeEEEece
Q 001126 416 VPVAHS----AAEVHFFVKDSDVVG----------SELIGTVAIPVE 448 (1149)
Q Consensus 416 f~v~~~----~~~L~~~V~D~D~~~----------ddfIG~v~Ipl~ 448 (1149)
|++.-. ++.|.|+|++....+ ...||.+.++|-
T Consensus 71 F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LF 117 (171)
T cd04012 71 FPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLF 117 (171)
T ss_pred CccchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeE
Confidence 876422 488999999866532 346777766654
No 208
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=90.69 E-value=1.8 Score=44.77 Aligned_cols=87 Identities=21% Similarity=0.259 Sum_probs=57.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEE---eeeeeecCCCCCeeceEEEEEccCC
Q 001126 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVV---GRTFVISNSEDPVWQQHFYVPVAHS 421 (1149)
Q Consensus 347 GtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l--~g~~~---~rTkVi~nt~nPvWNE~F~f~v~~~ 421 (1149)
..++|+|....++...+. . ..+.||++.| +++.. ..|+......++.|||...|++.-.
T Consensus 8 ~~~~i~i~~~~~~~~~~~-~---------------~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~ 71 (156)
T cd08380 8 FNLRIKIHGITNINLLDS-E---------------DLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILIS 71 (156)
T ss_pred CCeEEEEEeeccccccCC-C---------------ceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhh
Confidence 457888888888764111 0 1567888866 44322 2444433347899999888875422
Q ss_pred ----CceEEEEEEEccCCC---CcceeeEEEecee
Q 001126 422 ----AAEVHFFVKDSDVVG---SELIGTVAIPVEQ 449 (1149)
Q Consensus 422 ----~~~L~~~V~D~D~~~---ddfIG~v~Ipl~~ 449 (1149)
++.|.|+|++.+..+ ...||.+.++|-+
T Consensus 72 ~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 72 DLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred cCChhheEEEEEEEEecCCCCcceEEEEEeEEeEc
Confidence 488999999977643 4688888887754
No 209
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=90.03 E-value=2.6 Score=43.93 Aligned_cols=103 Identities=16% Similarity=0.250 Sum_probs=69.9
Q ss_pred CCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCCC--------------ceEEEEEEEccCCC-CcceeeEEEec
Q 001126 383 SDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA--------------AEVHFFVKDSDVVG-SELIGTVAIPV 447 (1149)
Q Consensus 383 sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~~--------------~~L~~~V~D~D~~~-ddfIG~v~Ipl 447 (1149)
+-..+.+.+.+++. +|+-+.-+.+|.++|.|.|++.... ..|++.|.--|..+ ..++|.-.+.=
T Consensus 34 s~~~l~l~f~~QRF-~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldW 112 (156)
T PF15627_consen 34 STFTLHLHFRGQRF-RSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDW 112 (156)
T ss_pred eEEEEEEEecCceE-ecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehH
Confidence 44566677788997 9999999999999999999976441 35677776666543 36888877766
Q ss_pred eeeccCCce--eeeEeeccCCCCCCCCCceeEEEEEeeccc
Q 001126 448 EQIYSGGKV--EGTYPVLNGSGKPCKPGATLTLSIQYTPME 486 (1149)
Q Consensus 448 ~~L~~G~~~--~~W~pL~~~~Gk~~~~~g~L~L~L~f~p~~ 486 (1149)
..+...... ..-+.|.+......-..|.|.|++...|..
T Consensus 113 R~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 113 RKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred HHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 555532222 344566554443222457888888887753
No 210
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=89.64 E-value=3.3 Score=44.23 Aligned_cols=124 Identities=10% Similarity=0.044 Sum_probs=66.3
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEE--eeeeeecCCCCCeeceEEEEEc
Q 001126 343 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVV--GRTFVISNSEDPVWQQHFYVPV 418 (1149)
Q Consensus 343 ~LlhGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l--~g~~~--~rTkVi~nt~nPvWNE~F~f~v 418 (1149)
|=+...++|+|..+.. ++.+.... ..-||++.| ++... -+|+.+..+.++.|||-..|++
T Consensus 6 wdi~~~friki~~~~~-~~~~~~~~---------------~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I 69 (178)
T cd08399 6 WDCDRKFRVKILGIDI-PVLPRNTD---------------LTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDI 69 (178)
T ss_pred EecCCCEEEEEEeecc-cCcCCCCc---------------eEEEEEEEEEECCeecccceeeccCCCCCccccccEECcc
Confidence 3344568899888873 33321111 234666544 33322 1566666678899999877775
Q ss_pred cCC----CceEEEEEEEccCCC--CcceeeEEEeceeeccCCceeee--EeeccCCCCCCCCCceeEEEEEeeccc
Q 001126 419 AHS----AAEVHFFVKDSDVVG--SELIGTVAIPVEQIYSGGKVEGT--YPVLNGSGKPCKPGATLTLSIQYTPME 486 (1149)
Q Consensus 419 ~~~----~~~L~~~V~D~D~~~--ddfIG~v~Ipl~~L~~G~~~~~W--~pL~~~~Gk~~~~~g~L~L~L~f~p~~ 486 (1149)
.-. .+.|.|+||+....+ ....|.. +.++-......-+| +.|.+.+|.- ..|...|.++-.|..
T Consensus 70 ~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~wvn~~LFD~~~~L--r~G~~~L~~W~~~~~ 141 (178)
T cd08399 70 KIKDLPKGALLNLQIYCGKAPALSSKKSAES--PSSESKGKHQLLYYVNLLLIDHRFLL--RTGEYVLHMWQISGK 141 (178)
T ss_pred ccccCChhhEEEEEEEEEecCcccccccccc--cccccccccceEEEEEEEEEcCCCce--ecCCEEEEEecCCCc
Confidence 432 488999999864321 1122221 11111111111234 4556666653 246888888876643
No 211
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=88.60 E-value=1.4 Score=46.05 Aligned_cols=66 Identities=20% Similarity=0.294 Sum_probs=47.0
Q ss_pred CCcEEEEEE--CCEEEe---eeeeecCCCCCeeceEEEEEccCC----CceEEEEEEEccCCC-CcceeeEEEece
Q 001126 383 SDPYVTIAV--AGAVVG---RTFVISNSEDPVWQQHFYVPVAHS----AAEVHFFVKDSDVVG-SELIGTVAIPVE 448 (1149)
Q Consensus 383 sDPYV~V~l--~g~~~~---rTkVi~nt~nPvWNE~F~f~v~~~----~~~L~~~V~D~D~~~-ddfIG~v~Ipl~ 448 (1149)
+|.||++.| +++... +|+.+.-+..+.|||-..|++.-. .+.|.|+||+.+..+ ...||.+.++|-
T Consensus 30 ~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lF 105 (159)
T cd08397 30 SDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLF 105 (159)
T ss_pred CCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeE
Confidence 788999876 444332 565555577789999888876432 488999999987543 457888777664
No 212
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=86.67 E-value=1.1 Score=50.74 Aligned_cols=80 Identities=19% Similarity=0.212 Sum_probs=60.4
Q ss_pred ceeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccC
Q 001126 341 KVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1149)
Q Consensus 341 ~~~LlhGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~ 420 (1149)
.+.-..|.|-+.+++++||+-.... +.-+.+.||++.++.+-.+||+|-....-=.|.|+|++.+..
T Consensus 45 ~~~s~tGiL~~H~~~GRGLr~~p~~-------------kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~ 111 (442)
T KOG1452|consen 45 RLVSSTGILYFHAYNGRGLRMTPQQ-------------KGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN 111 (442)
T ss_pred eeecccceEEEEEecccccccChhc-------------cCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc
Confidence 3344678899999999999844221 112479999999998776788887666667899999988763
Q ss_pred CCceEEEEEEEccC
Q 001126 421 SAAEVHFFVKDSDV 434 (1149)
Q Consensus 421 ~~~~L~~~V~D~D~ 434 (1149)
...+.+-|+.|+.
T Consensus 112 -~~vl~~lvySW~p 124 (442)
T KOG1452|consen 112 -IEVLHYLVYSWPP 124 (442)
T ss_pred -ceeeeEEEeecCc
Confidence 3467888888887
No 213
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=85.22 E-value=4 Score=41.66 Aligned_cols=67 Identities=21% Similarity=0.347 Sum_probs=43.9
Q ss_pred CcEEEEEE--CCEEE----eeeeeecCC-CCCeeceEEEEEcc--CC--CceEEEEEEEccCCCC-----cceeeEEEec
Q 001126 384 DPYVTIAV--AGAVV----GRTFVISNS-EDPVWQQHFYVPVA--HS--AAEVHFFVKDSDVVGS-----ELIGTVAIPV 447 (1149)
Q Consensus 384 DPYV~V~l--~g~~~----~rTkVi~nt-~nPvWNE~F~f~v~--~~--~~~L~~~V~D~D~~~d-----dfIG~v~Ipl 447 (1149)
+.||++.| +++.. ..|+.+.-+ .++.|||.+.|++. +. ++.|.|+|++.+.... ..||.+.++|
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l 82 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL 82 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence 34666655 44332 356665555 79999998777753 32 5889999998776443 5888888887
Q ss_pred eee
Q 001126 448 EQI 450 (1149)
Q Consensus 448 ~~L 450 (1149)
-+.
T Consensus 83 Fd~ 85 (142)
T PF00792_consen 83 FDY 85 (142)
T ss_dssp B-T
T ss_pred ECC
Confidence 543
No 214
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=85.06 E-value=3.3 Score=43.73 Aligned_cols=69 Identities=14% Similarity=0.189 Sum_probs=57.4
Q ss_pred CCcEEEEEECCEEEeeeeeecC--CCCCeeceEEEEEccCCCceEEEEEEEccCCCCcceeeEEEeceeec
Q 001126 383 SDPYVTIAVAGAVVGRTFVISN--SEDPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIY 451 (1149)
Q Consensus 383 sDPYV~V~l~g~~~~rTkVi~n--t~nPvWNE~F~f~v~~~~~~L~~~V~D~D~~~ddfIG~v~Ipl~~L~ 451 (1149)
...|++|.++++.+.+|+...- ...=.+||.|.+.+..--..|.|+||......+.+|+++.||+-...
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGLSDRLLAEVFVPVPGST 107 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCccceEEEEEEeeCCCCc
Confidence 5679999999999988876443 45567899999999877789999999988888999999999986443
No 215
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=84.89 E-value=5.3 Score=38.06 Aligned_cols=84 Identities=18% Similarity=0.258 Sum_probs=59.5
Q ss_pred CCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCCCceEEEEEEEccCCCCcceeeEEEeceeeccCCceeeeEee
Q 001126 383 SDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1149)
Q Consensus 383 sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~~~~L~~~V~D~D~~~ddfIG~v~Ipl~~L~~G~~~~~W~pL 462 (1149)
++-.+.+.+++..+++|.-.. ..+..|+++|.|.+. ....|+|.|+=+|. ..+-|...+.|++...+. -.+|
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~Ld-RsRELEI~VywrD~--RslCav~~lrLEd~~~~~----~~~l 80 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELE-RSRELEIAVYWRDW--RSLCAVKFLKLEDERHEV----QLDM 80 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEee-cccEEEEEEEEecc--hhhhhheeeEhhhhcccc----eecc
Confidence 577899999999999887543 356789999999987 44689999986655 456777778887744321 2344
Q ss_pred ccCCCCCCCCCceeEEEEEe
Q 001126 463 LNGSGKPCKPGATLTLSIQY 482 (1149)
Q Consensus 463 ~~~~Gk~~~~~g~L~L~L~f 482 (1149)
.+.|.+...++|
T Consensus 81 --------epqg~l~~ev~f 92 (98)
T cd08687 81 --------EPQLCLVAELTF 92 (98)
T ss_pred --------ccccEEEEEEEe
Confidence 233466667766
No 216
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=82.83 E-value=2.9 Score=48.73 Aligned_cols=94 Identities=18% Similarity=0.264 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCchhHHHHHHHHhhhhhHHHHHHHHHHHcCCceeecccccccccccCCc
Q 001126 886 EIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNR 965 (1149)
Q Consensus 886 ~ial~Ia~aira~rgv~V~IVlP~~Peg~p~~~s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~Lr~r 965 (1149)
.|+.+|.+|.+ .|=+|.|++-...-.+ +..+. +| .++|.++|+++-|. +
T Consensus 51 ~iv~aLi~AA~--nGK~Vtv~vELkARFD-Ee~Ni----~W------------a~~Le~aGv~ViyG---------~--- 99 (352)
T PF13090_consen 51 PIVNALIEAAE--NGKQVTVLVELKARFD-EENNI----HW------------AKRLEEAGVHVIYG---------V--- 99 (352)
T ss_dssp HHHHHHHHHHH--TT-EEEEEESTTSSST-TCCCC----CC------------CHHHHHCT-EEEE--------------
T ss_pred HHHHHHHHHHH--cCCEEEEEEEEecccc-HHHHh----HH------------HhhHHhcCeEEEcC---------C---
Confidence 57788888755 4666777776643222 12222 23 46799999998641 1
Q ss_pred ccccccCCCCCCCCCCCCchhhhhcccCcccceeeeEEEEEe-------CeEEEEcccccccCCCCCCCCcceEEEEeCc
Q 001126 966 EVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVD-------DEYVILGSANINQRSMEGTRDTEIAMGAYQP 1038 (1149)
Q Consensus 966 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iYVHSKlmIVD-------D~~viIGSANiN~RSm~G~~DsEiav~i~dp 1038 (1149)
...-||||+++|= -+|+-||+-|.|...-. .=|.+++..-++
T Consensus 100 -----------------------------~glKvHaK~~lI~R~e~~~~~~Y~hlgTGNyNe~TAr--~YtD~~l~Ta~~ 148 (352)
T PF13090_consen 100 -----------------------------PGLKVHAKICLIVRREGGGLRRYAHLGTGNYNEKTAR--IYTDLSLFTADP 148 (352)
T ss_dssp -----------------------------TT-EE--EEEEEEEEETTEEEEEEEEESS-SSTTHCC--CEEEEEEEE--H
T ss_pred -----------------------------CChhheeeEEEEEEEeCCcEEEEEEEcCCCcCccchh--heecceeecCCH
Confidence 1247899999885 38999999999999887 678888888888
Q ss_pred chh
Q 001126 1039 EYT 1041 (1149)
Q Consensus 1039 ~~~ 1041 (1149)
+.+
T Consensus 149 ~i~ 151 (352)
T PF13090_consen 149 EIG 151 (352)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 217
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=82.00 E-value=4.3 Score=43.30 Aligned_cols=53 Identities=11% Similarity=0.186 Sum_probs=32.0
Q ss_pred eeeeeecCCCCCeeceEEEEEccCC---CceEEEEEEEccCCC----CcceeeEEEecee
Q 001126 397 GRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSDVVG----SELIGTVAIPVEQ 449 (1149)
Q Consensus 397 ~rTkVi~nt~nPvWNE~F~f~v~~~---~~~L~~~V~D~D~~~----ddfIG~v~Ipl~~ 449 (1149)
..|.|...+.+|.|+|+|.+.+... ...|.|++++..... +..+|-+.+||-+
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 4788888899999999999987644 378999999866521 2578887777765
No 218
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=81.73 E-value=10 Score=40.89 Aligned_cols=51 Identities=20% Similarity=0.514 Sum_probs=36.5
Q ss_pred eeeeeecCCCCCeeceEEEEEccCC---CceEEEEEEEccCCC--C-cceeeEEEec
Q 001126 397 GRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSDVVG--S-ELIGTVAIPV 447 (1149)
Q Consensus 397 ~rTkVi~nt~nPvWNE~F~f~v~~~---~~~L~~~V~D~D~~~--d-dfIG~v~Ipl 447 (1149)
.+|.|...+.+|.|||++.+.+.-. ...|.|+++...... + ..+|-+.+||
T Consensus 55 ~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 55 YRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred EEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 4899999999999999999987643 478999887643321 1 3455555554
No 219
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=80.47 E-value=3.6 Score=52.37 Aligned_cols=120 Identities=19% Similarity=0.222 Sum_probs=76.1
Q ss_pred ceeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCeeceEEEE
Q 001126 341 KVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYV 416 (1149)
Q Consensus 341 ~~~LlhGtL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~rTkVi~nt~nPvWNE~F~f 416 (1149)
..-+..|.|++.+.+|.+|..- ...||+..++. ...++|+++.+|..|.||++|++
T Consensus 753 eSpl~ygflh~~vhsat~lkqs--------------------~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv 812 (1112)
T KOG4269|consen 753 ESPLLYGFLHVIVHSATGLKQS--------------------RNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHV 812 (1112)
T ss_pred cCcccccceeeeeccccccccc--------------------cceeeehhhhhhccccccccceeeecccCCCCChhccc
Confidence 4457789999999999998731 46798887753 33469999999999999999999
Q ss_pred EccCCCceEEEEEEEccCC-----------CCcceeeEEEeceeeccCCceeeeEeecc-CCCCCCCCCceeEEEEEeec
Q 001126 417 PVAHSAAEVHFFVKDSDVV-----------GSELIGTVAIPVEQIYSGGKVEGTYPVLN-GSGKPCKPGATLTLSIQYTP 484 (1149)
Q Consensus 417 ~v~~~~~~L~~~V~D~D~~-----------~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~-~~Gk~~~~~g~L~L~L~f~p 484 (1149)
++... +.++|...+++.- .+...|...+-+.--... ...|+.-.. -+| ..+...|.|.+
T Consensus 813 ~~~~s-qS~r~~~~ek~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~~~--d~d~~t~v~~~n~------~~ve~~v~~ss 883 (1112)
T KOG4269|consen 813 PVIES-QSSRLEKTEKSTPVEKLIDSHSQNSQNEEKRSRMKLDPQPHH--DADWYTQVIDMNG------IVVETSVKFSS 883 (1112)
T ss_pred chhhc-cccchhhhcccchHHHhhhccchhhcccccccccccCccccc--cccCccChhhhcC------cceeeeEEecc
Confidence 87643 3444555554431 133455544444321111 123443322 122 26778888888
Q ss_pred ccccc
Q 001126 485 MERLS 489 (1149)
Q Consensus 485 ~~~~~ 489 (1149)
.....
T Consensus 884 ss~Ss 888 (1112)
T KOG4269|consen 884 SSTSS 888 (1112)
T ss_pred ccccc
Confidence 66544
No 220
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=80.29 E-value=9 Score=37.62 Aligned_cols=94 Identities=15% Similarity=0.175 Sum_probs=52.0
Q ss_pred EEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCC--------CceEEEEEEEccCCCCcceeeEEEeceeecc--CCc
Q 001126 386 YVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS--------AAEVHFFVKDSDVVGSELIGTVAIPVEQIYS--GGK 455 (1149)
Q Consensus 386 YV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~--------~~~L~~~V~D~D~~~ddfIG~v~Ipl~~L~~--G~~ 455 (1149)
||++.+-.-....|.|+. +.+|.+|-+-.+.|... ...+.|+++.---..-..||.+.|++.++.. |..
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~ 80 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGER 80 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCce
Confidence 566666554444777776 99999998877777654 2568888876543345699999999999984 335
Q ss_pred eeeeEeeccCCCCCCCCCceeEEEEEee
Q 001126 456 VEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1149)
Q Consensus 456 ~~~W~pL~~~~Gk~~~~~g~L~L~L~f~ 483 (1149)
+.....|.+.+|+. -|.|.+.++..
T Consensus 81 i~~~~~l~g~~~~~---~g~l~y~~rl~ 105 (107)
T PF11618_consen 81 IHGSATLVGVSGED---FGTLEYWIRLR 105 (107)
T ss_dssp EEEEEEE-BSSS-T---SEEEEEEEEEE
T ss_pred EEEEEEEeccCCCe---EEEEEEEEEec
Confidence 66778888888874 45888877753
No 221
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=77.58 E-value=4.8 Score=49.31 Aligned_cols=85 Identities=29% Similarity=0.422 Sum_probs=58.8
Q ss_pred EEEeeeeeecCCCCCeeceEEEEEccCC-CceEEEEEEEccC-----CCCcceeeEEEeceeeccCCceeeeEeeccCCC
Q 001126 394 AVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHFFVKDSDV-----VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSG 467 (1149)
Q Consensus 394 ~~~~rTkVi~nt~nPvWNE~F~f~v~~~-~~~L~~~V~D~D~-----~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~G 467 (1149)
..++||.++.+.+||.|-+.|.+..... .+.|+|+++|-+. ...+|+|++..-++++..-.... .+|....+
T Consensus 40 ~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~--~~l~~~~~ 117 (529)
T KOG1327|consen 40 EEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLT--GPLLLKPG 117 (529)
T ss_pred ccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhh--hhhhcccC
Confidence 3456999999999999999988775443 4889999998775 34789999999998887543222 23333333
Q ss_pred CCCCCCceeEEEEE
Q 001126 468 KPCKPGATLTLSIQ 481 (1149)
Q Consensus 468 k~~~~~g~L~L~L~ 481 (1149)
+.. ..|.|.+.+.
T Consensus 118 ~~~-~~g~iti~ae 130 (529)
T KOG1327|consen 118 KNA-GSGTITISAE 130 (529)
T ss_pred ccC-CcccEEEEee
Confidence 432 2345655554
No 222
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=76.54 E-value=13 Score=35.82 Aligned_cols=51 Identities=22% Similarity=0.320 Sum_probs=35.0
Q ss_pred CCcEEEEEE--CCEEEe---eeeeecCCCCCeeceEEEEEccCC----CceEEEEEEEcc
Q 001126 383 SDPYVTIAV--AGAVVG---RTFVISNSEDPVWQQHFYVPVAHS----AAEVHFFVKDSD 433 (1149)
Q Consensus 383 sDPYV~V~l--~g~~~~---rTkVi~nt~nPvWNE~F~f~v~~~----~~~L~~~V~D~D 433 (1149)
+|.||++.| +++... .|+.+.-...+.|||-..|++.-. .+.|.|+|++..
T Consensus 32 ~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 32 SDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred ceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 478998876 444332 555544466689999888875432 488999999853
No 223
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=74.89 E-value=8.8 Score=47.87 Aligned_cols=42 Identities=29% Similarity=0.432 Sum_probs=33.2
Q ss_pred eeeeEEEEEe-------CeEEEEcccccccCCCCCCCCcceEEEEeCcchh
Q 001126 998 YVHSKGMIVD-------DEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1041 (1149)
Q Consensus 998 YVHSKlmIVD-------D~~viIGSANiN~RSm~G~~DsEiav~i~dp~~~ 1041 (1149)
-+|||+++|= -+|+-+|+-|.|..+-. .=|.+++..-|++++
T Consensus 437 KtHAKm~lVvRrE~~~lrrY~HlGTGNYn~~TAr--iYTD~sl~Tad~~i~ 485 (696)
T COG0855 437 KTHAKMLLVVRREGGKLRRYVHLGTGNYNPKTAR--LYTDLSLLTADPEIG 485 (696)
T ss_pred eeeeeEEEEEEecCCcEEEEEEecCCCCCcccee--eeeechhccCCHHHH
Confidence 5799999884 37999999999999887 566677776666643
No 224
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=72.42 E-value=38 Score=36.56 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHH-HHHHHHHHcCCCcEEEEEecCC
Q 001126 840 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIA-LKIADKIRAHERFAAYIVIPMW 910 (1149)
Q Consensus 840 ~sI~~ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ia-l~Ia~aira~rgv~V~IVlP~~ 910 (1149)
..|...++..|+.|+.|..+. -|+..+ +..+. ..+..+ .++|++++|+....
T Consensus 38 e~il~~Li~~l~k~~ef~IsV--aFit~s---------------G~sll~~~L~d~--~~Kgvkgkilts~Y 90 (198)
T COG3886 38 EKILPRLIDELEKADEFEISV--AFITES---------------GLSLLFDLLLDL--VNKGVKGKILTSDY 90 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEE--EEeeCc---------------cHHHHHHHHHHH--hcCCceEEEecccc
Confidence 368999999999999998888 466543 11222 222222 48999999999763
No 225
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=71.63 E-value=12 Score=40.44 Aligned_cols=52 Identities=12% Similarity=0.261 Sum_probs=38.0
Q ss_pred eeeeeecCCCCCeeceEEEEEccCC---CceEEEEEEEccCC--C---CcceeeEEEece
Q 001126 397 GRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSDVV--G---SELIGTVAIPVE 448 (1149)
Q Consensus 397 ~rTkVi~nt~nPvWNE~F~f~v~~~---~~~L~~~V~D~D~~--~---ddfIG~v~Ipl~ 448 (1149)
.+|-|...+.+|.|||++.+.+.-. ...|.|+++..... + ...+|-+.+||-
T Consensus 55 ~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 55 YKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred EEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 4899989999999999999987543 47899999764431 1 235666666653
No 226
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=67.13 E-value=5.6 Score=45.80 Aligned_cols=41 Identities=32% Similarity=0.330 Sum_probs=30.0
Q ss_pred ceeeeEEEEE----eCeEEEEccccccc-CCCCCCCCcceEEEEeCcc
Q 001126 997 IYVHSKGMIV----DDEYVILGSANINQ-RSMEGTRDTEIAMGAYQPE 1039 (1149)
Q Consensus 997 iYVHSKlmIV----DD~~viIGSANiN~-RSm~G~~DsEiav~i~dp~ 1039 (1149)
+-+|+|+.+. =+..++|||||+.. -.+. .+-.| ++++.|+.
T Consensus 79 ~~~HgKlY~f~k~g~~~~a~IGSANfS~~~~~~-~~~~E-~~v~~D~~ 124 (296)
T PF09565_consen 79 PPYHGKLYIFSKNGKPFRAYIGSANFSQINGFT-RRQYE-AMVTCDPN 124 (296)
T ss_pred CCcccEEEEEecCCCceEEEEeecccccccccc-cccee-EEEecChH
Confidence 4689999999 25689999999987 3332 26779 66666653
No 227
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=65.62 E-value=15 Score=38.94 Aligned_cols=51 Identities=14% Similarity=0.243 Sum_probs=35.4
Q ss_pred eeeecCCCCCeeceEEEEEccCC---CceEEEEEEEccCCC------CcceeeEEEecee
Q 001126 399 TFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSDVVG------SELIGTVAIPVEQ 449 (1149)
Q Consensus 399 TkVi~nt~nPvWNE~F~f~v~~~---~~~L~~~V~D~D~~~------ddfIG~v~Ipl~~ 449 (1149)
|.++....+|.|+|+|.+.+... ...|.|++++-.... ...+|-+.+||-+
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 34444449999999999987543 467999998866422 3467777777653
No 228
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=65.36 E-value=22 Score=38.18 Aligned_cols=39 Identities=10% Similarity=0.121 Sum_probs=32.0
Q ss_pred EeeeeeecCCCCCeeceEEEEEccCC---CceEEEEEEEccC
Q 001126 396 VGRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSDV 434 (1149)
Q Consensus 396 ~~rTkVi~nt~nPvWNE~F~f~v~~~---~~~L~~~V~D~D~ 434 (1149)
.+.|.|...+.+|.|+|+|.+.+.-. ...|.|+.++.+.
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~ 96 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISC 96 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeec
Confidence 35899999999999999999987644 3679999988554
No 229
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=65.11 E-value=7.7 Score=45.68 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCC
Q 001126 841 SIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMW 910 (1149)
Q Consensus 841 sI~~ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~aira~rgv~V~IVlP~~ 910 (1149)
..++.+.+.|.+||+.|+|.+=|.--. ..|++..|-.++..+...+|-|++...
T Consensus 39 ~fy~~lk~~I~~aq~Ri~lasLYlG~~----------------E~elv~cl~~aL~~~~~L~v~iLlD~~ 92 (469)
T KOG3964|consen 39 EFYQRLKKLIKKAQRRIFLASLYLGKL----------------ERELVDCLSNALEKNPSLKVSILLDFL 92 (469)
T ss_pred HHHHHHHHHHHHhhheeeeeeeccchh----------------HHHHHHHHHHHhccCCCcEEEeehhhh
Confidence 467889999999999999999988643 468899999999999999999999764
No 230
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=62.98 E-value=4.8 Score=48.99 Aligned_cols=42 Identities=24% Similarity=0.270 Sum_probs=28.7
Q ss_pred cccceeeeEEEEEeC-------eEEEEcccccccCCCCCC----------CCcceEEEEe
Q 001126 994 RFMIYVHSKGMIVDD-------EYVILGSANINQRSMEGT----------RDTEIAMGAY 1036 (1149)
Q Consensus 994 ~~~iYVHSKlmIVDD-------~~viIGSANiN~RSm~G~----------~DsEiav~i~ 1036 (1149)
|..+..|+|+++... .|+++|||||-.-.+ |. +|.|++|++.
T Consensus 344 R~~~~pH~K~y~~~~~~~~~~~~W~~lgShNLS~aAW-G~~~~~~~~l~i~nyElGVl~~ 402 (443)
T PF06087_consen 344 RSRAPPHIKTYMRFSKNDFKSLGWFYLGSHNLSKAAW-GKRSKNGSQLSIRNYELGVLFL 402 (443)
T ss_dssp TTTS-B--EEEEEEE-TTTSEECEEEEES--BSHHHH--EEETTTTCCEESSBEEEEEEE
T ss_pred CCCcCcceEEEEEecCCCCCccceEEeCcccCCHHHh-cccccCCceeeecceEEEEEEe
Confidence 345678999999986 599999999976444 34 8999999983
No 231
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=59.46 E-value=3.5 Score=51.61 Aligned_cols=84 Identities=11% Similarity=0.026 Sum_probs=58.8
Q ss_pred CCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCCCceEEEEEEEccCC-CCcceeeEEEeceeeccC-CceeeeE
Q 001126 383 SDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSG-GKVEGTY 460 (1149)
Q Consensus 383 sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~~~~L~~~V~D~D~~-~ddfIG~v~Ipl~~L~~G-~~~~~W~ 460 (1149)
.|||+.|.+.-...+.+.+...+..|.|||+|.+.+. ....+.|.|+..... .+.+..++.+-.++++.. ...+.|.
T Consensus 28 l~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~-~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~w~ 106 (694)
T KOG0694|consen 28 LQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVV-AGGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRLWV 106 (694)
T ss_pred hhhhheeccceeecccccCCCCCCCchhhhheeeeee-cCCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhhcc
Confidence 6999999998877777777888999999999999954 455678888876432 244555556655555532 2345788
Q ss_pred eeccCCCC
Q 001126 461 PVLNGSGK 468 (1149)
Q Consensus 461 pL~~~~Gk 468 (1149)
.+ .+.|+
T Consensus 107 ~~-~~~g~ 113 (694)
T KOG0694|consen 107 LI-EELGT 113 (694)
T ss_pred cc-ccccc
Confidence 75 34443
No 232
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=55.15 E-value=42 Score=36.18 Aligned_cols=39 Identities=8% Similarity=0.192 Sum_probs=31.9
Q ss_pred EEeeeeeecCCCCCeeceEEEEEccCC---CceEEEEEEEcc
Q 001126 395 VVGRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSD 433 (1149)
Q Consensus 395 ~~~rTkVi~nt~nPvWNE~F~f~v~~~---~~~L~~~V~D~D 433 (1149)
..+.|.|...+.+|.|+|++.+.+.-. ...|.|+.++-+
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 345899999999999999999987543 467999998865
No 233
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=53.57 E-value=24 Score=39.02 Aligned_cols=50 Identities=14% Similarity=0.093 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHhhccEEEEEEeeeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecC
Q 001126 840 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPM 909 (1149)
Q Consensus 840 ~sI~~ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~aira~rgv~V~IVlP~ 909 (1149)
..|.+...++|++|++.|||....=. -.++...|.+| .++||+|++++..
T Consensus 9 ~~I~~~i~elI~~Ae~eI~is~~~~~------------------l~~l~~~L~~a--~~rGV~V~li~~~ 58 (233)
T PF11495_consen 9 ETILERIRELIENAESEIYISIPPEF------------------LEELRDELEEA--VDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHC-SSEEEEEE-GGG------------------HHHHHHHHHHH--HHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHHhheEEEEEcCHHH------------------HHHHHHHHHHH--HHCCCEEEEEEeC
Confidence 47889999999999999999864211 12455556555 3689999999976
No 234
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=46.62 E-value=39 Score=43.05 Aligned_cols=13 Identities=31% Similarity=0.733 Sum_probs=6.2
Q ss_pred ceeeEEEeceeec
Q 001126 439 LIGTVAIPVEQIY 451 (1149)
Q Consensus 439 fIG~v~Ipl~~L~ 451 (1149)
|+|...+|-++|.
T Consensus 707 flgS~rmpyeeik 719 (1102)
T KOG1924|consen 707 FLGSFRMPYEEIK 719 (1102)
T ss_pred HHhhccCCHHHHH
Confidence 4555544444443
No 235
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.21 E-value=32 Score=41.45 Aligned_cols=12 Identities=67% Similarity=1.118 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCC
Q 001126 47 PAYPYQPSACPP 58 (1149)
Q Consensus 47 ~~~~~~~~~~~~ 58 (1149)
|+||+|-++-||
T Consensus 453 p~~P~~~~pppP 464 (483)
T KOG2236|consen 453 PAYPHQQSPPPP 464 (483)
T ss_pred CCCccccCCCCC
Confidence 577888887666
No 236
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=42.52 E-value=2.9e+02 Score=33.40 Aligned_cols=101 Identities=18% Similarity=0.227 Sum_probs=59.2
Q ss_pred CCcEEEEEECCEEEeeeeeecC----CCCC-eec---eEEEEEccC------C------CceEEEEEEEccC-------C
Q 001126 383 SDPYVTIAVAGAVVGRTFVISN----SEDP-VWQ---QHFYVPVAH------S------AAEVHFFVKDSDV-------V 435 (1149)
Q Consensus 383 sDPYV~V~l~g~~~~rTkVi~n----t~nP-vWN---E~F~f~v~~------~------~~~L~~~V~D~D~-------~ 435 (1149)
+..||+|.|.+-.. +|..+.= +.++ .=+ -.|++.-.+ + ...|+|.||--.. .
T Consensus 36 spCfC~IrL~~fP~-Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~ 114 (460)
T PF06219_consen 36 SPCFCEIRLKGFPS-QTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGN 114 (460)
T ss_pred CCeEEEEecCCCCc-cceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccccc
Confidence 67899999998655 4443321 1121 111 245554211 1 1468899987443 2
Q ss_pred CCcceeeEEEeceeecc--CC---ceeeeEeeccCCC-CCCCCCceeEEEEEeecc
Q 001126 436 GSELIGTVAIPVEQIYS--GG---KVEGTYPVLNGSG-KPCKPGATLTLSIQYTPM 485 (1149)
Q Consensus 436 ~ddfIG~v~Ipl~~L~~--G~---~~~~W~pL~~~~G-k~~~~~g~L~L~L~f~p~ 485 (1149)
+..+||.+.|+|. +.. +. ..++|+.|-..++ +..+...+|||.++-.|.
T Consensus 115 ~~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpD 169 (460)
T PF06219_consen 115 SGKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPD 169 (460)
T ss_pred cceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCC
Confidence 4579999999997 332 22 2368999943322 112246799999996654
No 237
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=41.60 E-value=1.3e+02 Score=37.52 Aligned_cols=113 Identities=12% Similarity=0.171 Sum_probs=74.7
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeceEEEEEccCCCceEEE
Q 001126 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 427 (1149)
Q Consensus 348 tL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nPvWNE~F~f~v~~~~~~L~~ 427 (1149)
.|.|.|.+.++|+....+. =-||++.+.|.+. +|--. ....|.|.-.=.|...++...+.+
T Consensus 342 smevvvmevqglksvapnr-----------------ivyctmevegekl-qtdqa-easkp~wgtqgdfstthplpvvkv 402 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVAPNR-----------------IVYCTMEVEGEKL-QTDQA-EASKPKWGTQGDFSTTHPLPVVKV 402 (1218)
T ss_pred eeeEEEeeeccccccCCCe-----------------eEEEEEEeccccc-ccchh-hhcCCCCCcCCCcccCCCCceeEE
Confidence 5899999999998654322 2599999999876 55433 256799998878888888777777
Q ss_pred EEEEccC----CCCcceeeEEEeceeeccCCceeeeEeeccCCCCCCCCCceeEEEEEe
Q 001126 428 FVKDSDV----VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1149)
Q Consensus 428 ~V~D~D~----~~ddfIG~v~Ipl~~L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f 482 (1149)
.++-... ..|.-+|++.|--..= ......|+.+.-++..+- ..-+|+|.++.
T Consensus 403 klftestgvlaledkelgrvil~ptpn--s~ks~ewh~mtvpknsqd-qdlkiklavrm 458 (1218)
T KOG3543|consen 403 KLFTESTGVLALEDKELGRVILQPTPN--SAKSPEWHTMTVPKNSQD-QDLKIKLAVRM 458 (1218)
T ss_pred EEEeecceeEEeechhhCeEEEecCCC--CcCCccceeeecCCCCcC-ccceEEEEEec
Confidence 7765543 4477899988733211 123357888765554432 22355555553
No 238
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=39.37 E-value=1.9e+02 Score=34.04 Aligned_cols=110 Identities=11% Similarity=0.106 Sum_probs=73.9
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCC--eeceEEEEEccCCCceE
Q 001126 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDP--VWQQHFYVPVAHSAAEV 425 (1149)
Q Consensus 348 tL~VtVieAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~rTkVi~nt~nP--vWNE~F~f~v~~~~~~L 425 (1149)
.|-|.|.+-.++... ...|+.+..+...+ +|..+.-+..= .-.|...+.+..-...|
T Consensus 59 ~LLVeI~EI~~i~k~--------------------khiyIef~~Gr~d~-TT~~IpTsKK~RI~IqqRV~IkIRQcDnTL 117 (508)
T PTZ00447 59 YLLVKINEIFNINKY--------------------KHIYIIFSTDKYDF-TTDEIPTNKKNRIHIDQRVDIKIRQCDETL 117 (508)
T ss_pred eEEEEehhhhccccc--------------------eeEEEEEEcCceEE-EccccccCcCceEEEeeeeeeeeeecCceE
Confidence 377888777666421 35699999888776 66554432222 23355555665556789
Q ss_pred EEEEEEccCCCCcceeeEEEecee-eccC-CceeeeEeeccCCCCCCCCCceeEEEEEeec
Q 001126 426 HFFVKDSDVVGSELIGTVAIPVEQ-IYSG-GKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1149)
Q Consensus 426 ~~~V~D~D~~~ddfIG~v~Ipl~~-L~~G-~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f~p 484 (1149)
++.|+-...++..-||.+.|.+.. +..+ -....||-+ ..+|+. ..++.|.|.-
T Consensus 118 kI~lfKKkLvkk~hIgdI~InIn~dIIdk~FPKnkWy~c-~kDGq~-----~cRIqLSFhK 172 (508)
T PTZ00447 118 RVDLFTTKLTKKVHIGQIKIDINASVISKSFPKNEWFVC-FKDGQE-----ICKVQMSFYK 172 (508)
T ss_pred EEEEEeccccceeEEEEEEecccHHHHhccCCccceEEE-ecCCce-----eeeEEEEehh
Confidence 999999888899999999998853 4433 345689999 477764 3356666643
No 239
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=38.91 E-value=34 Score=41.13 Aligned_cols=44 Identities=18% Similarity=0.339 Sum_probs=33.6
Q ss_pred ceeeEEEecee-eccCCceeeeEeeccCCCCCCCCCceeEEEEEeec
Q 001126 439 LIGTVAIPVEQ-IYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1149)
Q Consensus 439 fIG~v~Ipl~~-L~~G~~~~~W~pL~~~~Gk~~~~~g~L~L~L~f~p 484 (1149)
++|.+.||+.. +..|...+.||++.+...+..+ .|.+ |+++|..
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~~-~~~l-lk~~~~~ 45 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSVG-EGLI-IKVSSEE 45 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCcC-cceE-EEEEeee
Confidence 48999999999 5567788999999987666543 3566 6777654
No 240
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=37.65 E-value=1.6e+02 Score=39.64 Aligned_cols=6 Identities=50% Similarity=1.010 Sum_probs=2.4
Q ss_pred CCCCCC
Q 001126 228 NSPAYP 233 (1149)
Q Consensus 228 ~~~~~~ 233 (1149)
+++.|.
T Consensus 1455 tsp~ys 1460 (1605)
T KOG0260|consen 1455 TSPNYS 1460 (1605)
T ss_pred CCCCCC
Confidence 344443
No 241
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=31.99 E-value=1.7e+02 Score=35.87 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=12.6
Q ss_pred cccccccccCCCCCCCcccccCCCch
Q 001126 114 YPYAQAQSSQDHYPFPETTAQLPSGV 139 (1149)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (1149)
+.-.|+|+| |-||+-.|.-.|-|+
T Consensus 466 Pg~~s~~~s--~~P~q~s~~~~pp~~ 489 (554)
T KOG0119|consen 466 PGMQSAQSS--SLPQQASTTSIPPGD 489 (554)
T ss_pred CCccccccc--cCCcccccccCCccc
Confidence 334444444 445555566666664
No 242
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=31.11 E-value=1.2e+02 Score=33.81 Aligned_cols=53 Identities=23% Similarity=0.264 Sum_probs=32.5
Q ss_pred HHHHHHHHHhc---cceEEEEeeccceeeEEeCCC-CchHHHHHHHHHHHHhcCCe-EEEEE-ecCC
Q 001126 548 YDICNAISQAQ---RLIYITGWSVWHKVKLVRDAS-PALDCTLGELLRSKSQEGVR-VLLLV-WDDP 608 (1149)
Q Consensus 548 ~al~eAI~~Ak---~sI~I~~W~~~p~i~L~r~~~-~~~g~rL~dlL~~kA~rGVk-VrILV-wD~~ 608 (1149)
+.+.++|+.|+ ..++|.| |..++. ...-.-|..+|+.++++||+ |+|-+ -|+.
T Consensus 14 ~~l~~~~~~~k~~~~~lHl~G--------LlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGR 72 (223)
T PF06415_consen 14 PVLLEAIEHAKKNGGRLHLMG--------LLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGR 72 (223)
T ss_dssp HHHHHHHHHHCCTT--EEEEE--------EESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SS
T ss_pred HHHHHHHHHHHhcCCeEEEEE--------EecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCC
Confidence 46666777776 4899998 556654 34567888999999999987 65433 2643
No 243
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.64 E-value=2.7e+02 Score=31.75 Aligned_cols=32 Identities=41% Similarity=0.599 Sum_probs=26.9
Q ss_pred cccCCCCCCCCCCCCCCCCCCcccccCCCccc
Q 001126 85 YPYEHPAPVSSSMPQTPQHSSSFEYFPHPYPY 116 (1149)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (1149)
-++..|+|+-||.+..|.|+.+|.+-|-|-|+
T Consensus 246 a~~nnP~p~ySst~~ap~ps~f~~~~P~~qP~ 277 (338)
T KOG0917|consen 246 APANNPAPVYSSTGVAPNPSTFFTIQPTPQPI 277 (338)
T ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 35889999999999999999988887766444
No 244
>PF07615 Ykof: YKOF-related Family; InterPro: IPR011522 This entry represents YkoF-related proteins. YkoF is involved in the hydroxymethyl pyrimidine (HMP) salvage pathway []. The domain is found in pairs in these proteins.; PDB: 1S7H_A 1S99_A 1SBR_B.
Probab=27.47 E-value=1.6e+02 Score=27.44 Aligned_cols=69 Identities=17% Similarity=0.219 Sum_probs=46.1
Q ss_pred CCeeEecccccCCCCCCCcccccCCCccchhhHHHHHHHHHHHhcc-ceEEEEeeccceeeEEeCCCCchHHHHHHHHHH
Q 001126 514 GGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQR-LIYITGWSVWHKVKLVRDASPALDCTLGELLRS 592 (1149)
Q Consensus 514 Gn~V~ly~dg~~~~~~~~~i~l~~g~~y~~~~~f~al~eAI~~Ak~-sI~I~~W~~~p~i~L~r~~~~~~g~rL~dlL~~ 592 (1149)
++++.||.=|. .++.+.|.++|+.+++ -+++..-.++. .++.+....-..|.++..+
T Consensus 3 ~a~~SLYPmg~-------------------~dy~~~I~~~i~~~~~~gl~~~t~~~sT---~l~G~~~~Vf~~l~~~~~~ 60 (81)
T PF07615_consen 3 GAQFSLYPMGT-------------------DDYMDVILGAIDRLDDSGLWVETDHYST---QLRGDEEDVFDALEAAFER 60 (81)
T ss_dssp EEEEEEEETTS-------------------TTHHHHHHHHHHHCHHTTSEEEEETTEE---EEECBHHHHHHHHHHHHHH
T ss_pred eEEEEecccCC-------------------ccHHHHHHHHHHHHhhcCcEEeecccEE---EEECCHHHHHHHHHHHHHH
Confidence 67888887654 1456899999999874 57777654432 4555433345566666777
Q ss_pred HHhcCCeEEEEE
Q 001126 593 KSQEGVRVLLLV 604 (1149)
Q Consensus 593 kA~rGVkVrILV 604 (1149)
++++|..|-+-+
T Consensus 61 a~~~~~H~v~~~ 72 (81)
T PF07615_consen 61 AAEEGPHVVMVV 72 (81)
T ss_dssp HHCCSSSEEEEE
T ss_pred HhccCCeEEEEE
Confidence 788887776554
No 245
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=26.54 E-value=1.3e+02 Score=35.14 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=14.0
Q ss_pred cccccCCCCCCCCCCCCCCCC
Q 001126 83 LLYPYEHPAPVSSSMPQTPQH 103 (1149)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ 103 (1149)
.+-|+-.|.|-+.||-..||-
T Consensus 314 h~NpaffpPP~~~s~GppP~~ 334 (498)
T KOG4849|consen 314 HNNPAFFPPPQLGSMGPPPQM 334 (498)
T ss_pred ccCcccCCCCCcCcCCCCCCC
Confidence 445666677778888766653
No 246
>KOG1120 consensus Fe-S cluster biosynthesis protein ISA1 (contains a HesB-like domain) [Inorganic ion transport and metabolism]
Probab=22.04 E-value=36 Score=34.28 Aligned_cols=21 Identities=48% Similarity=0.646 Sum_probs=17.8
Q ss_pred CCcchhhccccCcccccCCCC
Q 001126 172 GQDSFVQDKLSSGRVFSRPHH 192 (1149)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~ 192 (1149)
-+-.||.|||+|+.||+.||-
T Consensus 102 teMDyvddkL~Sefvf~npna 122 (134)
T KOG1120|consen 102 TEMDYVDDKLSSEFVFSNPNA 122 (134)
T ss_pred ceehhhhhhhcCceEeeCCCc
Confidence 345689999999999999983
No 247
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=20.94 E-value=66 Score=39.31 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=24.3
Q ss_pred eeeeEEEEE---eC-eEEEEcccccccCCCCCCCCcceEEEEeC
Q 001126 998 YVHSKGMIV---DD-EYVILGSANINQRSMEGTRDTEIAMGAYQ 1037 (1149)
Q Consensus 998 YVHSKlmIV---DD-~~viIGSANiN~RSm~G~~DsEiav~i~d 1037 (1149)
--|+|+||. |+ --++|.||||-..-+. +-|-+|-+-|
T Consensus 101 ~hHsKm~ll~y~~~~lRVvI~TaNl~~~Dw~---~~~q~vw~~d 141 (443)
T PF06087_consen 101 THHSKMMLLFYEDGSLRVVIPTANLTPYDWN---NKTQGVWIQD 141 (443)
T ss_dssp -B--EEEEEEETTCEEEEEEESS-BSHHHHC---SSB-EEEE--
T ss_pred cccceeEEEEeCCccEEEEEECCCCCHHHHC---CcceeEEEec
Confidence 469999998 67 7899999999888775 5666666644
Done!