Your job contains 1 sequence.
>001127
MLKENVNVTTHLPVDQINESHRSRVSQNFRAAKPFLDRKRQRQAVDFDRQFPNKSRDSNS
IPIESPDSITSVKRVPLAEIPVSTPSLQTINGVKSVVGEFSGISCVLNDLSNERTNGVPL
DISDPFITPIKQPEFFNMSESFSMPSPLDDDFDDSILQEIDAICEKSAAKDVRKAQNSGI
YEETHQNDNSCTHLNASLESVTTNENIRMDISMDLAGDMKSSMEKTDTIQTIKTQNMPDE
YSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKGISPSNILAMTFTTAAASEMRDRIGS
IVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVRLLENEKI
LVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDVAKASGKT
PAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAII
VDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRL
TRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKIL
EHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGVAFYRKKVVRAIIAML
RTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKISGT
FKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLL
NEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHF
RTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRL
LYVAMTRARKKLFILYVMMDANWQLLQPSRFLKEIPHHLREVQAEQSVQDQHENIPEGTA
QFTINLPREENCCETDLVSTDFLNVQLSGAATESMELLEACNGNSFLRRFSVEDRSIISH
LFHQWAKKKAFQEPKRLLNKVDFVIDERLRVKKNKHKDVLRALKSCLSSNEAFHYAEYVL
RWEKIPADQRAHMIREKQEHFQKLRIENSMGSSAPTSKQIAFLRSLGCTEAPASRLHASR
LIEQYKSL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001127
(1148 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2117303 - symbol:SRS2 "SUPPRESSOR OF RAD SIX-S... 3331 0. 1
TIGR_CMR|DET_1196 - symbol:DET_1196 "ATP-dependent DNA he... 367 4.0e-54 3
UNIPROTKB|P0A5A3 - symbol:uvrD1 "ATP-dependent DNA helica... 355 9.4e-54 3
TIGR_CMR|GSU_3411 - symbol:GSU_3411 "ATP-dependent DNA he... 392 1.7e-52 3
UNIPROTKB|Q9KVH9 - symbol:VC0167 "ATP-dependent DNA helic... 343 3.6e-52 3
TIGR_CMR|VC_0167 - symbol:VC_0167 "ATP-dependent DNA heli... 343 3.6e-52 3
TIGR_CMR|CBU_2054 - symbol:CBU_2054 "DNA helicase II" spe... 363 1.3e-50 3
TIGR_CMR|BA_0305 - symbol:BA_0305 "ATP-dependent DNA heli... 366 1.4e-49 3
UNIPROTKB|P09980 - symbol:rep "rep" species:83333 "Escher... 346 5.8e-49 3
UNIPROTKB|Q9KVF6 - symbol:VC0190 "DNA helicase II" specie... 342 7.6e-49 3
TIGR_CMR|VC_0190 - symbol:VC_0190 "DNA helicase II" speci... 342 7.6e-49 3
TIGR_CMR|APH_0903 - symbol:APH_0903 "helicase, UvrD/Rep f... 324 1.3e-48 3
UNIPROTKB|Q0BY27 - symbol:HNE_2938 "Putative DNA helicase... 327 1.8e-48 3
TIGR_CMR|SO_0467 - symbol:SO_0467 "DNA helicase II" speci... 328 5.4e-48 3
UNIPROTKB|P03018 - symbol:uvrD "DNA-dependent ATPase I an... 345 6.0e-48 3
UNIPROTKB|Q48BM1 - symbol:uvrD "DNA helicase II" species:... 323 1.7e-47 3
UNIPROTKB|Q5LU84 - symbol:SPO1174 "DNA helicase II, putat... 332 4.5e-45 3
TIGR_CMR|SPO_1174 - symbol:SPO_1174 "DNA helicase II, put... 332 4.5e-45 3
TIGR_CMR|SO_4325 - symbol:SO_4325 "ATP-dependent DNA heli... 323 4.3e-43 3
TIGR_CMR|CHY_1099 - symbol:CHY_1099 "ATP-dependent DNA he... 375 3.1e-41 2
TIGR_CMR|ECH_0860 - symbol:ECH_0860 "helicase, UvrD/Rep f... 337 1.9e-40 2
TIGR_CMR|NSE_0356 - symbol:NSE_0356 "helicase, UvrD/Rep f... 341 1.4e-35 2
ASPGD|ASPL0000016352 - symbol:AN3797 species:162425 "Emer... 271 3.0e-35 3
TIGR_CMR|CJE_1244 - symbol:CJE_1244 "ATP-dependent DNA he... 332 2.5e-34 2
TIGR_CMR|BA_1239 - symbol:BA_1239 "ATP-dependent DNA heli... 235 5.4e-34 3
TIGR_CMR|CJE_0868 - symbol:CJE_0868 "ATP-dependent DNA he... 217 7.9e-32 3
TIGR_CMR|GSU_3266 - symbol:GSU_3266 "DNA helicase II, put... 232 5.6e-31 3
UNIPROTKB|P64320 - symbol:uvrD2 "ATP-dependent DNA helica... 225 8.6e-29 3
POMBASE|SPAC4H3.05 - symbol:srs2 "ATP-dependent DNA helic... 276 3.4e-27 2
CGD|CAL0003422 - symbol:orf19.5970 species:5476 "Candida ... 281 2.0e-19 2
UNIPROTKB|P15038 - symbol:helD "DNA helicase IV" species:... 235 2.2e-19 2
SGD|S000003628 - symbol:SRS2 "DNA helicase and DNA-depend... 206 2.9e-19 3
TIGR_CMR|VC_A0717 - symbol:VC_A0717 "helicase IV" species... 138 5.2e-14 3
UNIPROTKB|Q87W28 - symbol:PSPTO_4751 "UvrD/REP helicase f... 128 9.5e-14 3
TIGR_CMR|GSU_1534 - symbol:GSU_1534 "exodeoxyribonuclease... 154 1.2e-12 5
UNIPROTKB|Q0BZ49 - symbol:HNE_2551 "UvrD/REP helicase dom... 178 1.8e-12 3
POMBASE|SPBC336.01 - symbol:fbh1 "DNA helicase I" species... 134 7.7e-12 2
TIGR_CMR|BA_1142 - symbol:BA_1142 "ATP-dependent nuclease... 107 8.2e-12 4
TIGR_CMR|CPS_2454 - symbol:CPS_2454 "helicase IV" species... 147 2.8e-11 3
UNIPROTKB|Q3AA35 - symbol:addA "ATP-dependent helicase/nu... 131 6.0e-10 4
TIGR_CMR|CHY_2186 - symbol:CHY_2186 "exonuclease RexA" sp... 131 6.0e-10 4
UNIPROTKB|O53347 - symbol:Rv3201c "PROBABLE ATP-DEPENDENT... 125 1.9e-09 4
TIGR_CMR|CJE_1654 - symbol:CJE_1654 "ATP-dependent DNA he... 151 2.0e-09 4
SGD|S000005455 - symbol:HMI1 "Mitochondrial inner membran... 130 1.4e-07 3
UNIPROTKB|Q9KPP6 - symbol:VC_2320 "Exodeoxyribonuclease V... 106 1.4e-07 3
TIGR_CMR|VC_2320 - symbol:VC_2320 "exodeoxyribonuclease V... 106 1.4e-07 3
UNIPROTKB|O53348 - symbol:Rv3202c "POSSIBLE ATP-DEPENDENT... 116 1.6e-07 3
TIGR_CMR|NSE_0467 - symbol:NSE_0467 "ATP-dependent DNA he... 106 2.1e-07 3
TIGR_CMR|ECH_0387 - symbol:ECH_0387 "double-strand break ... 93 3.3e-07 4
UNIPROTKB|Q83C98 - symbol:CBU_1230 "ATP-dependent nucleas... 110 4.0e-07 3
TIGR_CMR|CBU_1230 - symbol:CBU_1230 "UvrD/REP helicase fa... 110 4.0e-07 3
TIGR_CMR|SO_2148 - symbol:SO_2148 "exodeoxyribonuclease V... 81 1.2e-06 6
TIGR_CMR|SPO_3873 - symbol:SPO_3873 "ATP-dependent DNA he... 108 2.1e-06 4
UNIPROTKB|Q4K7K2 - symbol:PFL_4698 "Uncharacterized prote... 110 9.8e-06 2
UNIPROTKB|P08394 - symbol:recB species:83333 "Escherichia... 110 1.5e-05 3
CGD|CAL0000942 - symbol:HMI1 species:5476 "Candida albica... 118 2.1e-05 3
UNIPROTKB|Q5ACI1 - symbol:HMI1 "Putative uncharacterized ... 118 2.1e-05 3
UNIPROTKB|Q81PJ0 - symbol:BAS2623 "UvrD/Rep helicase fami... 132 3.7e-05 3
TIGR_CMR|BA_2814 - symbol:BA_2814 "uvrD/Rep helicase fami... 132 3.7e-05 3
TIGR_CMR|BA_1040 - symbol:BA_1040 "helicase, UvrD/Rep fam... 140 4.2e-05 2
UNIPROTKB|P96920 - symbol:recB "Exodeoxyribonuclease V be... 141 4.6e-05 4
ZFIN|ZDB-GENE-041210-99 - symbol:fbxo18 "F-box protein, h... 105 0.00028 4
UNIPROTKB|Q888Y5 - symbol:PSPTO_0879 "Uncharacterized pro... 102 0.00057 2
>TAIR|locus:2117303 [details] [associations]
symbol:SRS2 "SUPPRESSOR OF RAD SIX-SCREEN MUTANT 2"
species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=RCA;IDA]
[GO:0036292 "DNA rewinding" evidence=IDA] [GO:0007062 "sister
chromatid cohesion" evidence=RCA] [GO:0007126 "meiosis"
evidence=RCA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0010332 "response to
gamma radiation" evidence=RCA] [GO:0032204 "regulation of telomere
maintenance" evidence=RCA] [GO:0033044 "regulation of chromosome
organization" evidence=RCA] [GO:0042138 "meiotic DNA double-strand
break formation" evidence=RCA] [GO:0043247 "telomere maintenance in
response to DNA damage" evidence=RCA] [GO:0045132 "meiotic
chromosome segregation" evidence=RCA] InterPro:IPR000212
InterPro:IPR014016 InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361
PROSITE:PS51198 PROSITE:PS51217 GO:GO:0005524 EMBL:CP002687
GO:GO:0003677 GO:GO:0006310 GO:GO:0004003 PANTHER:PTHR11070
GO:GO:0003678 GO:GO:0036292 IPI:IPI00539963 RefSeq:NP_194242.6
UniGene:At.32291 ProteinModelPortal:F4JSH5 SMR:F4JSH5 PRIDE:F4JSH5
EnsemblPlants:AT4G25120.1 GeneID:828615 KEGG:ath:AT4G25120
OMA:ETENFRS ArrayExpress:F4JSH5 Uniprot:F4JSH5
Length = 1149
Score = 3331 (1177.6 bits), Expect = 0., P = 0.
Identities = 702/1162 (60%), Positives = 841/1162 (72%)
Query: 20 SHRSRVSQNFRAAKPFLDRKRQ-RQAVDFDRQFPNKSRDSNSIPIESPDSITSVKRVPLA 78
SH R+SQ+FR+AKP LDRKR A + P + ++S + ES + PL
Sbjct: 16 SH-GRISQSFRSAKPLLDRKRPIENAPNSSNPLPQRMKES--MDTESVSHNINFNSTPLM 72
Query: 79 EIPVSTPSLQTINGVKSVVGEFSGISCVLN------DLSNERTNGVPLDI-------SDP 125
E+ +TP + ++S G C L DL E NG DI S+
Sbjct: 73 ELSANTPYKRLKPEIESYA---DGHPCGLRTPPPRFDLDKEIINGFQTDIYADVGSLSEA 129
Query: 126 FITPIKQPEFFNMSESFSMPSPLDDDFDDSILQEIDAICEKSAAKDVRKAQNSGIYEETH 185
F+TP+K+PE +S S S LDDDFDDSIL+EID ICE+SA K + + IY+ T
Sbjct: 130 FVTPLKEPERVTLSNGCSTSSILDDDFDDSILEEIDLICEQSARKAACQTPTTSIYQ-TP 188
Query: 186 QNDNSCTHLNASLESVTTNENIRMDISMDLAGDMKSSMEKTDTIQTIKT--QNMPDEYSK 243
DN + ASL+ E D ++ L D E+T TI +MPDE SK
Sbjct: 189 SKDNKSSDPKASLDFRDV-EKFEPDSNVKLKLD-----EETPTIAADPALLNSMPDECSK 242
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
Y+ SLND+Q +AAC ++STPL+++AGPGSGK G+ PSNILAMTFT A
Sbjct: 243 YMLSLNDRQRDAACSNISTPLMVIAGPGSGKTSTMVGRVLVLLNEGLLPSNILAMTFTKA 302
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
A SEMR+RIG GK AK++TISTFHSFSLQLCR HA+KL+RTSEF +YGHGQQRRAII
Sbjct: 303 ATSEMRERIGKSAGKKAAKDITISTFHSFSLQLCRMHADKLQRTSEFSVYGHGQQRRAII 362
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
EAVRL E EK K S + + G A + +S ++ KF
Sbjct: 363 EAVRLYEEEK----KNGSKTSVPCESGEGLNGAGAGAVCPEYAKDLSK----KWQKFVTQ 414
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
G KASGK+P + RK+G+EIGA IL NYN IL++C+ALDYHDLISCSV LLS FPEVF
Sbjct: 415 G----KASGKSPEQCRKMGNEIGAKILGNYNDILKACDALDYHDLISCSVTLLSDFPEVF 470
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDSFR 529
+E QD+WKAIIVDEFQDTS MQY LL++L SHN ITIVGDDDQSIF FNGAD SGFDSFR
Sbjct: 471 KECQDTWKAIIVDEFQDTSTMQYKLLRMLGSHNHITIVGDDDQSIFGFNGADSSGFDSFR 530
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
+DF NYKE+RL +NYRS+R IVEAASS+I++N KRCQ K++ ++NS GSKI +KECHNE+
Sbjct: 531 RDFPNYKEVRLIKNYRSSRHIVEAASSIIKNNTKRCQSKSISSENSQGSKITVKECHNEE 590
Query: 590 AQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGVAFYR 649
AQCA++IDKI+E ++G CS+G IAILYRRQVSGKVFQ AFR+RKIPFN+HGVAFYR
Sbjct: 591 AQCAYVIDKIIEITNDGSTPCCSHGDIAILYRRQVSGKVFQNAFRQRKIPFNVHGVAFYR 650
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRVFKAFXXXXXXXXXRVIDHIDKISTIRKCSFISAA 709
KKVV+ I+AML+TT CDD YRRVFKA R+I+HI+KIST RKCSFISAA
Sbjct: 651 KKVVQVILAMLKTTFSECDDASYRRVFKALLPFEKEEKKRIIEHIEKISTSRKCSFISAA 710
Query: 710 CDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQR 769
DIF AKISGTFKRSQLTQGRKVL TL+M++KLV RE S+SAV+T VANM+PQKYLLEQR
Sbjct: 711 SDIFNAKISGTFKRSQLTQGRKVLQTLDMVAKLVDREQSLSAVVTCVANMIPQKYLLEQR 770
Query: 770 AVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFI 829
AVVD DGGKLLNEDNDLRSVLQYL+ DV +F+ST T +EE + ++KKGC N L +FI
Sbjct: 771 AVVDNDGGKLLNEDNDLRSVLQYLMDDVAEFISTHCTTTEEEDAI-KEKKGC-NQLHSFI 828
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
+YISERETE+FR++R DNENSVTLTTIHQSKGLEWDIVF+ KANE EIPL+HE NG +E
Sbjct: 829 NYISERETENFRSRRRDNENSVTLTTIHQSKGLEWDIVFIVKANENEIPLLHESNGNASE 888
Query: 890 KGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQPSRFLKEIPHHLREVQAEQSVQ 949
GTS+EEERRLLYVAMTRARKKLF LYV +D+NWQ+LQPSRFLKEIP HL +VQ + SV
Sbjct: 889 SGTSLEEERRLLYVAMTRARKKLFFLYVTVDSNWQVLQPSRFLKEIPGHLLQVQGDMSVN 948
Query: 950 D---QHENIPEGTAQFTINLPREENCCETDLVSTDFLNVQLSGAATESMELLEACNGNSF 1006
D HEN+P T Q + + E+ L D +N+ A+ ES+ A NGN+F
Sbjct: 949 DCRKVHENLPNKTEQSVSSFGTDIKHEESKLTDNDVMNIPEDYASEESIAAY-ALNGNNF 1007
Query: 1007 LRRFSVEDRSIISHLFHQWAKKKAFQEPKRLLNKVDFVIDERLRVKKNKHKDVLRALKSC 1066
L+RF VE RS++SHLFH WAKK+AFQEPKRL++KV FVI ERL +KKNKHKDVLRALKS
Sbjct: 1008 LKRFDVEVRSVVSHLFHNWAKKQAFQEPKRLIDKVRFVIGERLAIKKNKHKDVLRALKSS 1067
Query: 1067 LSSNEAFHYAEYVLRWEKIPADQRAHMIREKQEHFQKLRIENSMGSSAPTSKQIAFLRSL 1126
L+S EAF YAE+VLRWE++PAD RAH++REKQEHFQKLRIENSMG+S TSKQIAFL SL
Sbjct: 1068 LTSEEAFQYAEHVLRWEQLPADTRAHIVREKQEHFQKLRIENSMGTSEATSKQIAFLHSL 1127
Query: 1127 GCTEAPASRLHASRLIEQYKSL 1148
GCT P SRLHASRLIEQYKSL
Sbjct: 1128 GCTVVPTSRLHASRLIEQYKSL 1149
>TIGR_CMR|DET_1196 [details] [associations]
symbol:DET_1196 "ATP-dependent DNA helicase PcrA"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR000212
InterPro:IPR014016 InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361
PROSITE:PS51198 PROSITE:PS51217 GO:GO:0005524 GO:GO:0003677
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0004003
PANTHER:PTHR11070 Gene3D:1.10.10.160 InterPro:IPR013986
eggNOG:COG0210 KO:K03657 OMA:ASPHSIL HOGENOM:HOG000033016
RefSeq:YP_181909.1 ProteinModelPortal:Q3Z790 STRING:Q3Z790
GeneID:3229519 KEGG:det:DET1196 PATRIC:21609427
ProtClustDB:CLSK2767644 BioCyc:DETH243164:GJNF-1197-MONOMER
Uniprot:Q3Z790
Length = 738
Score = 367 (134.2 bits), Expect = 4.0e-54, Sum P(3) = 4.0e-54
Identities = 92/260 (35%), Positives = 143/260 (55%)
Query: 408 RDGMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
R+ + AK+ PA + + G +E+ + E Y L+ ALD+ DL+ V+L
Sbjct: 141 RNAISQAKSQLVLPAYYFEKGRSYFEEVVGRVYELYEKRLKQNKALDFDDLLLKVVQLFK 200
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADI 522
PEV YQ+ + ++VDEFQDT+ +QY L+++L A + I +VGD DQSI+S+ AD+
Sbjct: 201 QHPEVLARYQERYLHVMVDEFQDTNLVQYELVKMLSAKYKNICVVGDPDQSIYSWRSADL 260
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
+F D K I L +NYRST+ I+EAAS +I N R + ++ T+N G I +
Sbjct: 261 RNVFNFETDNPGAKVILLEQNYRSTKNILEAASCVIAPNSGRKPI-SLWTENESGQPIAV 319
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN- 641
E NE + F++ +I E + S G IAILYR + + AF +P+
Sbjct: 320 VETFNEQEEAQFVVSEI-EKLTRYEKF--SPGDIAILYRTNAQSRALEEAFIRYGMPYRL 376
Query: 642 IHGVAFYRKKVVRAIIAMLR 661
+ G FY+++ V+ I+A LR
Sbjct: 377 VSGTRFYQRREVKDIVAYLR 396
Score = 175 (66.7 bits), Expect = 4.0e-54, Sum P(3) = 4.0e-54
Identities = 38/107 (35%), Positives = 65/107 (60%)
Query: 849 NSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRA 908
++VTL T+HQ+KGLE+ +VF+ E +P F+ ++EERRL YV +TRA
Sbjct: 551 SAVTLITLHQAKGLEYPVVFMVGMEEGVLPHSRSFDDPAQ-----MQEERRLCYVGVTRA 605
Query: 909 RKKLFILYVM---MDANWQLLQPSRFLKEIPHHLREVQAEQSVQDQH 952
RK+L+++ + + +PSR+LK+IP + + + +Q + +QH
Sbjct: 606 RKRLYLVRAFRRSLMGQSNVNEPSRYLKDIPQSITKGREKQPLSEQH 652
Score = 150 (57.9 bits), Expect = 4.0e-54, Sum P(3) = 4.0e-54
Identities = 44/127 (34%), Positives = 66/127 (51%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN Q +A + P+LI+AGPGSGK GI+P I+A+TFT
Sbjct: 5 LTGLNPAQKQAVEA-VEGPVLILAGPGSGKTRVITHRIAYLIKVVGINPHRIMAVTFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM R+ +++ + A LT+ TFH+ ++ R L ++F+IY Q+ I
Sbjct: 64 AAREMETRL-NLLAPSAAGRLTMGTFHAICARILRQDGLPLGVPADFVIYDDDDQQSLIK 122
Query: 350 EAVRLLE 356
+A+ LE
Sbjct: 123 QAMAELE 129
>UNIPROTKB|P0A5A3 [details] [associations]
symbol:uvrD1 "ATP-dependent DNA helicase UvrD1"
species:1773 "Mycobacterium tuberculosis" [GO:0000287 "magnesium
ion binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005618 "cell wall" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0009650 "UV protection" evidence=IMP] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0032564 "dATP binding"
evidence=IDA] [GO:0033202 "DNA helicase complex" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] [GO:0043140 "ATP-dependent 3'-5'
DNA helicase activity" evidence=IDA] [GO:0060543 "negative
regulation of strand invasion" evidence=IDA] InterPro:IPR000212
InterPro:IPR005751 InterPro:IPR014016 InterPro:IPR014017
Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198 PROSITE:PS51217
GO:GO:0005886 GO:GO:0005524 GO:GO:0005737 GO:GO:0040007
GO:GO:0005618 EMBL:BX842575 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0000287 GO:GO:0003677 GO:GO:0006302
PANTHER:PTHR11070 GO:GO:0043140 GO:GO:0009650 GO:GO:0032564
GO:GO:0006268 Gene3D:1.10.10.160 InterPro:IPR013986 eggNOG:COG0210
GO:GO:0033202 GO:GO:0060543 KO:K03657 OMA:ASPHSIL PIR:C70716
RefSeq:NP_335410.1 RefSeq:YP_006514306.1 RefSeq:YP_177772.1
ProteinModelPortal:P0A5A3 SMR:P0A5A3 PRIDE:P0A5A3
EnsemblBacteria:EBMYCT00000001498 EnsemblBacteria:EBMYCT00000071031
GeneID:13319506 GeneID:885442 GeneID:926367 KEGG:mtc:MT0976
KEGG:mtu:Rv0949 KEGG:mtv:RVBD_0949 PATRIC:18123890
TubercuList:Rv0949 HOGENOM:HOG000033016 ProtClustDB:CLSK799345
TIGRFAMs:TIGR01073 Uniprot:P0A5A3
Length = 771
Score = 355 (130.0 bits), Expect = 9.4e-54, Sum P(3) = 9.4e-54
Identities = 87/253 (34%), Positives = 140/253 (55%)
Query: 433 AAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQY 492
A++ + Y LR+ NALD+ DLI +V +L FP++ Q Y+ ++ ++VDE+QDT+ QY
Sbjct: 189 ASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDTNHAQY 248
Query: 493 SLLQILASHN--------RITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNY 544
L++ L + + +VGD DQSI++F GA I + F +D+ + + I L +NY
Sbjct: 249 VLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTILLEQNY 308
Query: 545 RSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHAS 604
RST+ I+ AA+S+I N R + K + TD G I+ NE + F+ ++I + +
Sbjct: 309 RSTQNILSAANSVIARNAGRRE-KRLWTDAGAGELIVGYVADNEHDEARFVAEEI-DALA 366
Query: 605 NGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVAFYRKKVVRAIIAMLRTT 663
G S +Y +A+ YR S + + IP+ + GV FY +K +R I+A LR
Sbjct: 367 EG--SEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVL 424
Query: 664 -LPGCDDGPYRRV 675
PG D RR+
Sbjct: 425 DNPG-DAVSLRRI 436
Score = 173 (66.0 bits), Expect = 9.4e-54, Sum P(3) = 9.4e-54
Identities = 54/150 (36%), Positives = 79/150 (52%)
Query: 238 PDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNIL 282
P + L LN QQ +A + S PLLIVAG GSGK G+ IL
Sbjct: 13 PSPADQLLDGLNPQQRQAVVHEGS-PLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQIL 71
Query: 283 AMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGH 341
A+TFT AA+EMR+R+ +VG+ A+ + +STFHS +++ R+ A +E S F IY
Sbjct: 72 AITFTNKAAAEMRERVVGLVGEK-ARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDA 130
Query: 342 GQQRRAIIEAVRLLENEKILVVKRISTDML 371
RR + +++ + L +KR S +L
Sbjct: 131 DDSRRLL----QMVGRDLGLDIKRYSPRLL 156
Score = 163 (62.4 bits), Expect = 9.4e-54, Sum P(3) = 9.4e-54
Identities = 50/149 (33%), Positives = 74/149 (49%)
Query: 794 LADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTL 853
L V ST A G D+D VL F++ +S + H VTL
Sbjct: 539 LVSVAHEFSTDRENAAALGPDDEDVPDT-GVLADFLERVS-LVADADEIPEH-GAGVVTL 595
Query: 854 TTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLF 913
T+H +KGLE+ +VFV + P + + T + EERRL YV +TRAR++L+
Sbjct: 596 MTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNP-----TELSEERRLAYVGITRARQRLY 650
Query: 914 ILYVMMDANW--QLLQP-SRFLKEIPHHL 939
+ ++ ++W +L P SRFL+EIP L
Sbjct: 651 VSRAIVRSSWGQPMLNPESRFLREIPQEL 679
>TIGR_CMR|GSU_3411 [details] [associations]
symbol:GSU_3411 "ATP-dependent DNA helicase PcrA,
putative" species:243231 "Geobacter sulfurreducens PCA" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR000212
InterPro:IPR014016 InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361
PROSITE:PS51198 PROSITE:PS51217 GO:GO:0005524 GO:GO:0003677
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0004003
PANTHER:PTHR11070 HOGENOM:HOG000033015 KO:K03657 OMA:ASPHSIL
RefSeq:NP_954451.1 ProteinModelPortal:Q746V7 SMR:Q746V7
GeneID:2686622 KEGG:gsu:GSU3411 PATRIC:22029681
ProtClustDB:CLSK829264 BioCyc:GSUL243231:GH27-3385-MONOMER
Uniprot:Q746V7
Length = 739
Score = 392 (143.0 bits), Expect = 1.7e-52, Sum P(3) = 1.7e-52
Identities = 89/270 (32%), Positives = 144/270 (53%)
Query: 411 MDVAKASGKTPAEFRK---IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+D K G P + G+ +G + Y L+ CNALD+ DLI +V+L P
Sbjct: 141 IDDCKNRGLAPEDLPADTFTGEVVGR-VYAAYQERLKKCNALDFGDLIMLTVRLFEEHPV 199
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFD 526
V + Y+D W+ I+VDE+QDT+ +QY L+++LA H + +VGDDDQSI+ + GADI
Sbjct: 200 VLERYRDQWRWILVDEYQDTNPIQYRLVRLLAGEHRNLCVVGDDDQSIYRWRGADIRNIL 259
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
F KDF I+L +NYRSTR I+ AA +++ N R + K + ++N G I+ +
Sbjct: 260 DFEKDFPGVTTIKLEQNYRSTRNILAAAGAVVARNRGR-KAKTLWSENPPGDPIVYRRLA 318
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
+E + F+ +I + G +A+ YR +V + A IP++ + G+
Sbjct: 319 DERDEARFVCREIERYVRRGG----DLRDVAVFYRTNAQSRVVEDALVADGIPYHMVGGM 374
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRV 675
FY + V+ ++A LR D+ +R+
Sbjct: 375 RFYERMEVKDVLAYLRVLANPADEVSLKRI 404
Score = 154 (59.3 bits), Expect = 1.7e-52, Sum P(3) = 1.7e-52
Identities = 57/190 (30%), Positives = 92/190 (48%)
Query: 804 KFTAAKEEGNVDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGL 862
+ AA EE D++G L F++ ++ + E T R S TL T+H +KGL
Sbjct: 505 ELVAAMEEFERTSDERG----LAPFLEQVALVSDLERSGTGRE----SATLMTLHAAKGL 556
Query: 863 EWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDAN 922
E+ +VF+ E P V + ++EEERRL YV MTRAR++L +
Sbjct: 557 EFPMVFMIGMEEKLFPHVRSLDDP-----EAMEEERRLCYVGMTRARERLCLTNARRRRI 611
Query: 923 W---QLLQPSRFLKEIPHHLREVQAEQSVQDQHENIPEGTAQFTINLPREE--NCCETDL 977
+ Q+ PSRF+ +IP +L +++ E Q ++ TA R + ET+
Sbjct: 612 FGQDQVNMPSRFIADIPRNLLDLEDEWQ-QPALGSVAPDTAGRGREPARHNLASILETE- 669
Query: 978 VSTDFLNVQL 987
+ DF +V++
Sbjct: 670 IEPDFADVEI 679
Score = 128 (50.1 bits), Expect = 1.7e-52, Sum P(3) = 1.7e-52
Identities = 42/112 (37%), Positives = 53/112 (47%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFT 287
K L +LN Q AA PLL++AG GSGK G+ ILA+TFT
Sbjct: 2 KLLDNLNPPQ-RAAVLHGEGPLLVLAGAGSGKTRVIVHRIAHLIRERGVPARQILAVTFT 60
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIY 339
AA EMR+R+ +VG I+TFHS ++ R L S F IY
Sbjct: 61 NKAAGEMRERVEKLVGGEVP---LIATFHSTCARILRREIHHLGYDSSFAIY 109
Score = 42 (19.8 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 21/89 (23%), Positives = 35/89 (39%)
Query: 274 KGISPSNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERT 333
+G++P ++ A TFT + + K A L +++L H LER
Sbjct: 147 RGLAPEDLPADTFTGEVVGRVYAAYQERLKKCNA--LDFGDLIMLTVRLFEEHPVVLERY 204
Query: 334 SE---FLIYGHGQQRRAI-IEAVRLLENE 358
+ +++ Q I VRLL E
Sbjct: 205 RDQWRWILVDEYQDTNPIQYRLVRLLAGE 233
>UNIPROTKB|Q9KVH9 [details] [associations]
symbol:VC0167 "ATP-dependent DNA helicase Rep"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] InterPro:IPR000212
InterPro:IPR005752 InterPro:IPR014016 InterPro:IPR014017
Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198 PROSITE:PS51217
GO:GO:0005524 GO:GO:0005737 GO:GO:0003677 GO:GO:0006260
GenomeReviews:AE003852_GR HSSP:P09980 GO:GO:0004003
PANTHER:PTHR11070 GO:GO:0006268 Gene3D:1.10.10.160
InterPro:IPR013986 KO:K03656 TIGRFAMs:TIGR01074 EMBL:AE004107
PIR:E82355 RefSeq:NP_229824.1 ProteinModelPortal:Q9KVH9 SMR:Q9KVH9
DNASU:2614083 GeneID:2614083 KEGG:vch:VC0167 PATRIC:20079380
OMA:DIHYEDW ProtClustDB:CLSK873891 Uniprot:Q9KVH9
Length = 671
Score = 343 (125.8 bits), Expect = 3.6e-52, Sum P(3) = 3.6e-52
Identities = 83/245 (33%), Positives = 138/245 (56%)
Query: 433 AAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQY 492
A E Y ++S NALD+ DLI V LL + EV Q +Q+ + ++VDE+QDT+ QY
Sbjct: 165 AHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQY 224
Query: 493 SLLQILASHN-RITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIV 551
L+++L R+T+VGDDDQSI+S+ GA +DF + K I+L +NYRST I+
Sbjct: 225 ELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRIL 284
Query: 552 EAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASIC 611
AA+ LI +N Q K + ++ + G K+ + +NED + +I +I+ H +
Sbjct: 285 RAANILIANNPHVYQ-KALFSELAEGEKLKVILANNEDHEAERVIAEIIAHKF---LNRT 340
Query: 612 SYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG-VAFYRKKVVRAIIAMLRTTLPGCDDG 670
Y AILYR ++ + + + ++P+ + G +F+ + ++ I+A LR + DD
Sbjct: 341 EYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDN 400
Query: 671 PYRRV 675
+ R+
Sbjct: 401 AFLRI 405
Score = 186 (70.5 bits), Expect = 3.6e-52, Sum P(3) = 3.6e-52
Identities = 59/176 (33%), Positives = 98/176 (55%)
Query: 794 LADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTL 853
+ +V+D S A E N DQ +K LK + ++ R+ R + +D+ ++V L
Sbjct: 503 MKNVSDLYSW-IVADLEGDNPDQQEK----TLKEVVQRLTLRDMME-RGEENDDSDAVQL 556
Query: 854 TTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKL- 912
T+H SKGLE+ V++ A E +P H+ + ++E+ +VEEERRL+YV +TRA+++L
Sbjct: 557 MTLHASKGLEFPYVYLIGAEEGILP--HQTS--IDEE--NVEEERRLMYVGITRAQRELT 610
Query: 913 FILYVMMDANWQLLQPS--RFLKEIPHHLREVQAEQSVQDQHENIPEGTAQFTINL 966
FI+ +L++PS RFL E+P E + ++ Q E + +G A NL
Sbjct: 611 FIVCKERRQFGELIKPSQSRFLDELPQDDIEWEVKKKPVTQEERMAKGQAHIA-NL 665
Score = 143 (55.4 bits), Expect = 3.6e-52, Sum P(3) = 3.6e-52
Identities = 48/147 (32%), Positives = 72/147 (48%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEAV-KYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ +GK ++ L +STFH+ L + R + L + F ++ Q + E
Sbjct: 62 EMKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKELT 121
Query: 353 -RLLENEKILVVKRIST------DMLT 372
+ L+ +K L+ +ST DMLT
Sbjct: 122 EKQLDGDKDLLRLLLSTISNWKNDMLT 148
>TIGR_CMR|VC_0167 [details] [associations]
symbol:VC_0167 "ATP-dependent DNA helicase Rep" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR000212 InterPro:IPR005752
InterPro:IPR014016 InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361
PROSITE:PS51198 PROSITE:PS51217 GO:GO:0005524 GO:GO:0005737
GO:GO:0003677 GO:GO:0006260 GenomeReviews:AE003852_GR HSSP:P09980
GO:GO:0004003 PANTHER:PTHR11070 GO:GO:0006268 Gene3D:1.10.10.160
InterPro:IPR013986 KO:K03656 TIGRFAMs:TIGR01074 EMBL:AE004107
PIR:E82355 RefSeq:NP_229824.1 ProteinModelPortal:Q9KVH9 SMR:Q9KVH9
DNASU:2614083 GeneID:2614083 KEGG:vch:VC0167 PATRIC:20079380
OMA:DIHYEDW ProtClustDB:CLSK873891 Uniprot:Q9KVH9
Length = 671
Score = 343 (125.8 bits), Expect = 3.6e-52, Sum P(3) = 3.6e-52
Identities = 83/245 (33%), Positives = 138/245 (56%)
Query: 433 AAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQY 492
A E Y ++S NALD+ DLI V LL + EV Q +Q+ + ++VDE+QDT+ QY
Sbjct: 165 AHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQY 224
Query: 493 SLLQILASHN-RITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIV 551
L+++L R+T+VGDDDQSI+S+ GA +DF + K I+L +NYRST I+
Sbjct: 225 ELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRIL 284
Query: 552 EAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASIC 611
AA+ LI +N Q K + ++ + G K+ + +NED + +I +I+ H +
Sbjct: 285 RAANILIANNPHVYQ-KALFSELAEGEKLKVILANNEDHEAERVIAEIIAHKF---LNRT 340
Query: 612 SYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG-VAFYRKKVVRAIIAMLRTTLPGCDDG 670
Y AILYR ++ + + + ++P+ + G +F+ + ++ I+A LR + DD
Sbjct: 341 EYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDN 400
Query: 671 PYRRV 675
+ R+
Sbjct: 401 AFLRI 405
Score = 186 (70.5 bits), Expect = 3.6e-52, Sum P(3) = 3.6e-52
Identities = 59/176 (33%), Positives = 98/176 (55%)
Query: 794 LADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTL 853
+ +V+D S A E N DQ +K LK + ++ R+ R + +D+ ++V L
Sbjct: 503 MKNVSDLYSW-IVADLEGDNPDQQEK----TLKEVVQRLTLRDMME-RGEENDDSDAVQL 556
Query: 854 TTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKL- 912
T+H SKGLE+ V++ A E +P H+ + ++E+ +VEEERRL+YV +TRA+++L
Sbjct: 557 MTLHASKGLEFPYVYLIGAEEGILP--HQTS--IDEE--NVEEERRLMYVGITRAQRELT 610
Query: 913 FILYVMMDANWQLLQPS--RFLKEIPHHLREVQAEQSVQDQHENIPEGTAQFTINL 966
FI+ +L++PS RFL E+P E + ++ Q E + +G A NL
Sbjct: 611 FIVCKERRQFGELIKPSQSRFLDELPQDDIEWEVKKKPVTQEERMAKGQAHIA-NL 665
Score = 143 (55.4 bits), Expect = 3.6e-52, Sum P(3) = 3.6e-52
Identities = 48/147 (32%), Positives = 72/147 (48%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEAV-KYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ +GK ++ L +STFH+ L + R + L + F ++ Q + E
Sbjct: 62 EMKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKELT 121
Query: 353 -RLLENEKILVVKRIST------DMLT 372
+ L+ +K L+ +ST DMLT
Sbjct: 122 EKQLDGDKDLLRLLLSTISNWKNDMLT 148
>TIGR_CMR|CBU_2054 [details] [associations]
symbol:CBU_2054 "DNA helicase II" species:227377 "Coxiella
burnetii RSA 493" [GO:0003678 "DNA helicase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] InterPro:IPR000212
InterPro:IPR014016 InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361
PROSITE:PS51198 PROSITE:PS51217 GO:GO:0005524 GO:GO:0003677
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0004003
PANTHER:PTHR11070 Gene3D:1.10.10.160 InterPro:IPR013986 KO:K03657
HOGENOM:HOG000033016 ProtClustDB:PRK11773 RefSeq:NP_821025.2
ProteinModelPortal:Q83A56 GeneID:1209967 KEGG:cbu:CBU_2054
PATRIC:17932857 OMA:LYQAYDQ BioCyc:CBUR227377:GJ7S-2023-MONOMER
Uniprot:Q83A56
Length = 723
Score = 363 (132.8 bits), Expect = 1.3e-50, Sum P(3) = 1.3e-50
Identities = 82/243 (33%), Positives = 135/243 (55%)
Query: 435 ILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSL 494
+ + Y + R +D+ +L+ +++LL + + YQ ++ I+VDEFQDT+ +QY+
Sbjct: 177 VYKAYEDVCRQSGLVDFAELLLRTLELLRDSATLREHYQQRFQHILVDEFQDTNTIQYAW 236
Query: 495 LQILASHNRITI-VGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEA 553
L+ LA + + VGDDDQSI+S+ GA I F +DF K IRL +NYRST+ I++A
Sbjct: 237 LKALAGEQTVFMAVGDDDQSIYSWRGAKIENIHHFSRDFAGVKTIRLEQNYRSTQTILDA 296
Query: 554 ASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSY 613
A+++I +N R K + TD+ G I + NE + ++I I G SY
Sbjct: 297 ANAVIDNNKNRFG-KKLWTDSRTGEPITLYTAFNERDEAFYVISCIDAWVRQGH----SY 351
Query: 614 GSIAILYRRQVSGKVFQTAFRERKIPFNIHG-VAFYRKKVVRAIIAMLRTTLPGCDDGPY 672
+AILYR ++F+ +R+IP+ I+G + F+ + ++ +A LR DD +
Sbjct: 352 NDVAILYRSNAQSRLFEECLIDRQIPYRIYGGLKFFERAEIKDALAYLRLMANRNDDAAF 411
Query: 673 RRV 675
RV
Sbjct: 412 ERV 414
Score = 163 (62.4 bits), Expect = 1.3e-50, Sum P(3) = 1.3e-50
Identities = 43/121 (35%), Positives = 67/121 (55%)
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
++ L AF+ +++ ET + H + V+L T+H +KGLE+ +V ++ E P H
Sbjct: 531 LSPLDAFLSHVA-LETGEEQASAHSD--CVSLMTLHAAKGLEFPLVIISGLEEDLFP--H 585
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHH 938
+ + +EEERRL YV MTRAR+KL + Y + + QPSRF++EIP
Sbjct: 586 RMS---IDAANGLEEERRLCYVGMTRAREKLILTYTESRRLHGLEKFNQPSRFIQEIPPE 642
Query: 939 L 939
L
Sbjct: 643 L 643
Score = 132 (51.5 bits), Expect = 1.3e-50, Sum P(3) = 1.3e-50
Identities = 45/130 (34%), Positives = 61/130 (46%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+SLN Q EA +L++AG GSGK +SP +ILA+TFT
Sbjct: 10 LESLNPPQKEAVTSPFDH-VLVLAGAGSGKTRVLTHRIAWLIQQKNVSPYSILAVTFTNK 68
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR RI S++G + + TFH + +L R+H + F I Q R I
Sbjct: 69 AAYEMRGRIESMLGMPMGA-MWVGTFHGLAHRLLRAHWKDAGLPQSFQILDTDDQYRLIR 127
Query: 350 EAVRLLENEK 359
R L E+
Sbjct: 128 RMQRNLNLEE 137
>TIGR_CMR|BA_0305 [details] [associations]
symbol:BA_0305 "ATP-dependent DNA helicase PcrA"
species:198094 "Bacillus anthracis str. Ames" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR000212
InterPro:IPR005751 InterPro:IPR014016 InterPro:IPR014017
Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198 PROSITE:PS51217
GO:GO:0005524 GO:GO:0005737 EMBL:AE016879 EMBL:AE017334
GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0004003 PANTHER:PTHR11070 HSSP:P56255 GO:GO:0006268
Gene3D:1.10.10.160 InterPro:IPR013986 KO:K03657 OMA:ASPHSIL
HOGENOM:HOG000033016 TIGRFAMs:TIGR01073 RefSeq:NP_842854.1
RefSeq:YP_016916.1 ProteinModelPortal:Q81ZG2 SMR:Q81ZG2
DNASU:1086929 EnsemblBacteria:EBBACT00000012924
EnsemblBacteria:EBBACT00000013919 GeneID:1086929 GeneID:2818538
KEGG:ban:BA_0305 KEGG:bar:GBAA_0305 PATRIC:18778156
ProtClustDB:CLSK872778 BioCyc:BANT261594:GJ7F-342-MONOMER
Uniprot:Q81ZG2
Length = 747
Score = 366 (133.9 bits), Expect = 1.4e-49, Sum P(3) = 1.4e-49
Identities = 85/235 (36%), Positives = 132/235 (56%)
Query: 429 DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTS 488
+++ + + Y L N+LD+ DLI +++L PEV + YQ ++ I VDE+QDT+
Sbjct: 171 EKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFERVPEVLEFYQRKFQYIHVDEYQDTN 230
Query: 489 AMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRST 547
QY L++ LA+ + +VGD DQSI+ + GADIS SF KD+ N + I L +NYRS+
Sbjct: 231 KAQYLLVKHLAARFKNLCVVGDSDQSIYRWRGADISNILSFEKDYENAQVILLEQNYRSS 290
Query: 548 RCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGP 607
+ I+ AA+++I+ N R + K + TDN GSKI E + F+ KI + G
Sbjct: 291 QNILNAANAVIERNTNR-KPKKLWTDNEVGSKISYYRAATEKDEAYFVAKKIRDDIQMGK 349
Query: 608 ASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVAFYRKKVVRAIIAMLR 661
Y A+LYR ++ + F + IP+ I G FY +K ++ I+A LR
Sbjct: 350 RK---YTDFAVLYRTNAQSRMVEEIFLKSNIPYKIVGGTKFYDRKEIKDILAYLR 401
Score = 162 (62.1 bits), Expect = 1.4e-49, Sum P(3) = 1.4e-49
Identities = 44/117 (37%), Positives = 64/117 (54%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFT 287
+ L LN QQ + A + PLL++AG GSGK G++P N+LA+TFT
Sbjct: 6 RLLNGLNPQQ-QKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFT 64
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQ 344
AA EMR+RI ++VG A+++ ISTFHS +++ R + + F I G Q
Sbjct: 65 NKAAREMRERIDTLVGPE-AEDIWISTFHSMCVRILRRDIDHIGINRNFTILDSGDQ 120
Score = 121 (47.7 bits), Expect = 1.4e-49, Sum P(3) = 1.4e-49
Identities = 34/94 (36%), Positives = 50/94 (53%)
Query: 851 VTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARK 910
V L T+H +KGLE+ +VF+ E P H + E ++EERRL YV +TRA +
Sbjct: 558 VILMTMHSAKGLEFPVVFIVGLEEGIFP--HT-RSLMEED--EMQEERRLAYVGITRAEE 612
Query: 911 KLFILYVMMDANW---QLLQPSRFLKEIPHHLRE 941
+L++ M + + SRF+ EIP L E
Sbjct: 613 ELYLSNAQMRTLFGRTSMNAASRFITEIPTELVE 646
>UNIPROTKB|P09980 [details] [associations]
symbol:rep "rep" species:83333 "Escherichia coli K-12"
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006268 "DNA unwinding
involved in replication" evidence=IEA;IDA] [GO:0005524 "ATP
binding" evidence=IEA;IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA;IDA] [GO:0003677 "DNA binding"
evidence=IEA;IDA] InterPro:IPR000212 InterPro:IPR005752
InterPro:IPR014016 InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361
PROSITE:PS51198 PROSITE:PS51217 GO:GO:0005524 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0004003
PANTHER:PTHR11070 EMBL:M87049 GO:GO:0006268 Gene3D:1.10.10.160
InterPro:IPR013986 eggNOG:COG0210 EMBL:X04794 EMBL:M11055
PIR:E65181 RefSeq:YP_026251.1 RefSeq:YP_491661.1 PDB:1UAA
PDBsum:1UAA ProteinModelPortal:P09980 SMR:P09980 DIP:DIP-10662N
MINT:MINT-1286362 PRIDE:P09980 EnsemblBacteria:EBESCT00000004523
EnsemblBacteria:EBESCT00000015393 GeneID:12934323 GeneID:948292
KEGG:ecj:Y75_p3397 KEGG:eco:b3778 PATRIC:32123047 EchoBASE:EB0830
EcoGene:EG10837 HOGENOM:HOG000033015 KO:K03656 OMA:VCTFHAL
ProtClustDB:PRK10919 BioCyc:EcoCyc:EG10837-MONOMER
BioCyc:ECOL316407:JW5604-MONOMER BioCyc:MetaCyc:EG10837-MONOMER
EvolutionaryTrace:P09980 Genevestigator:P09980 TIGRFAMs:TIGR01074
Uniprot:P09980
Length = 673
Score = 346 (126.9 bits), Expect = 5.8e-49, Sum P(3) = 5.8e-49
Identities = 105/356 (29%), Positives = 179/356 (50%)
Query: 419 KTPAEFRK--IG--DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQD 474
KTP++ IG D I A Y+ L++CN LD+ DLI LL EV + +Q+
Sbjct: 147 KTPSQAAASAIGERDRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEEVRKRWQN 206
Query: 475 SWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDSFRKDFL 533
+ ++VDE+QDT+ QY L+++L S R T+VGDDDQSI+S+ GA +DF
Sbjct: 207 KIRYLLVDEYQDTNTSQYELVKLLVGSRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFP 266
Query: 534 NYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCA 593
K I+L +NYRS+ I++AA+ LI +N + K + ++ +G+++ + +NE+ +
Sbjct: 267 ALKVIKLEQNYRSSGRILKAANILIANNPHVFE-KRLFSELGYGAELKVLSANNEEHEAE 325
Query: 594 FIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG-VAFYRKKV 652
+ +++ H + Y AILYR +VF+ + +IP+ I G +F+ +
Sbjct: 326 RVTGELIAHHF---VNKTQYKDYAILYRGNHQSRVFEKFLMQNRIPYKISGGTSFFSRPE 382
Query: 653 VRAIIAMLRTTLPGCDDGPYRRVFKAFXXXXXXXXXRVIDHIDKISTIRKCSFISAACDI 712
++ ++A LR DD + R+ + + + + R S +A+ D+
Sbjct: 383 IKDLLAYLRVLTNPDDDSAFLRIVNT---PKREIGPATLKKLGEWAMTRNKSMFTASFDM 439
Query: 713 -FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLE 767
+SG + LT + L I +L REP I+AV + M + +L E
Sbjct: 440 GLSQTLSGRGYEA-LT---RFTHWLAEIQRLAEREP-IAAVRDLIHGMDYESWLYE 490
Score = 152 (58.6 bits), Expect = 5.8e-49, Sum P(3) = 5.8e-49
Identities = 44/137 (32%), Positives = 70/137 (51%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN Q +A ++ P L++AG GSGK G +I A+TFT AA
Sbjct: 3 LNPGQQQAV-EFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G +G+ A+ L ISTFH+ L + + L + F ++ Q + E
Sbjct: 62 EMKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELT 121
Query: 353 R-LLENEKILVVKRIST 368
L+E++K+L+ + IST
Sbjct: 122 EGLIEDDKVLLQQLIST 138
Score = 143 (55.4 bits), Expect = 5.8e-49, Sum P(3) = 5.8e-49
Identities = 43/129 (33%), Positives = 70/129 (54%)
Query: 841 RTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRL 900
R + + + V L T+H SKGLE+ V++ E +P H+ +++E +++EERRL
Sbjct: 542 RGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP--HQ--SSIDED--NIDEERRL 595
Query: 901 LYVAMTRARKKL-FILYVMMDANWQLL--QPSRFLKEIPHHLREVQAEQSVQDQHENIPE 957
YV +TRA+K+L F L +L+ +PSRFL E+P + E+ V E + +
Sbjct: 596 AYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEERMQK 655
Query: 958 GTAQFTINL 966
G + NL
Sbjct: 656 GQSHLA-NL 663
Score = 44 (20.5 bits), Expect = 3.4e-16, Sum P(3) = 3.4e-16
Identities = 17/64 (26%), Positives = 27/64 (42%)
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYL--LADVTD---FLSTKFTAAKEEGNVDQ 816
+K+L++ R GG +++ +L YL L + D FL T +E G
Sbjct: 359 EKFLMQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATL 418
Query: 817 DKKG 820
K G
Sbjct: 419 KKLG 422
>UNIPROTKB|Q9KVF6 [details] [associations]
symbol:VC0190 "DNA helicase II" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] InterPro:IPR000212 InterPro:IPR005753
InterPro:IPR014016 InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361
PROSITE:PS51198 PROSITE:PS51217 GO:GO:0005524 GO:GO:0005737
GO:GO:0003677 GenomeReviews:AE003852_GR GO:GO:0006281 HSSP:P09980
GO:GO:0004003 PANTHER:PTHR11070 GO:GO:0006268 Gene3D:1.10.10.160
InterPro:IPR013986 KO:K03657 OMA:ASPHSIL ProtClustDB:PRK11773
TIGRFAMs:TIGR01075 EMBL:AE004109 PIR:E82353 RefSeq:NP_229847.1
ProteinModelPortal:Q9KVF6 SMR:Q9KVF6 DNASU:2614699 GeneID:2614699
KEGG:vch:VC0190 PATRIC:20079426 Uniprot:Q9KVF6
Length = 723
Score = 342 (125.4 bits), Expect = 7.6e-49, Sum P(3) = 7.6e-49
Identities = 82/267 (30%), Positives = 144/267 (53%)
Query: 415 KASGKTPAEFRKIGDEIGAAILENYNGILRSCNA---LDYHDLISCSVKLLSTFPEVFQE 471
K G P D + L+ Y +C+ +D+ +++ +++LL + +
Sbjct: 151 KDEGLRPTHINAF-DPVTQTYLKLYTAYQEACDRAGLVDFAEILLRALELLRGNQHIREH 209
Query: 472 YQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDSFRK 530
YQ +K I+VDEFQDT+A+QY+ L+++A + + + IVGDDDQSI+ + GA + + F +
Sbjct: 210 YQARFKHILVDEFQDTNAIQYAWLRMMAGAQSNVMIVGDDDQSIYGWRGARVENIEKFTR 269
Query: 531 DFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDA 590
+F + IRL +NYRST+ I+EA+++LI +N +R K + TD G I + +NE
Sbjct: 270 EFPSVNTIRLEQNYRSTKTILEASNTLIANNSERMG-KQLWTDGLVGEPISVYSAYNELD 328
Query: 591 QCAFIIDKILE-HASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG-VAFY 648
+ F++ KI G + C AILYR +V + A + + + I+G + F+
Sbjct: 329 EARFVVSKIKGWQEQGGTLTDC-----AILYRNNAQSRVLEEALLQASLAYRIYGGMRFF 383
Query: 649 RKKVVRAIIAMLRTTLPGCDDGPYRRV 675
++ ++ ++ LR DD + RV
Sbjct: 384 ERQEIKDALSYLRLINNRNDDTAFERV 410
Score = 167 (63.8 bits), Expect = 7.6e-49, Sum P(3) = 7.6e-49
Identities = 51/152 (33%), Positives = 80/152 (52%)
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
+ +L AF+ + + E + HD+ +V L T+H +KGLE+ +VF+ E P
Sbjct: 528 MTMLTAFLTHAA-LEAGEGQADEHDD--AVQLMTLHSAKGLEFPLVFMVGVEEGMFPS-- 582
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSRFLKEIPHH 938
+ E G +EEERRL YV MTRA +KL+I Y M + + +PSRF++E+P
Sbjct: 583 --QMSAEEAGR-LEEERRLCYVGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPEG 639
Query: 939 -LREVQAEQSVQDQHENIPEGTAQFTINLPRE 969
L EV+ + V P T +F+ + +E
Sbjct: 640 CLDEVRMKAQVSR-----PTSTGRFSQTVVKE 666
Score = 134 (52.2 bits), Expect = 7.6e-49, Sum P(3) = 7.6e-49
Identities = 41/127 (32%), Positives = 61/127 (48%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTF 286
S L LND+Q EA + LLI+AG GSGK SP +++A+TF
Sbjct: 5 SLLLDGLNDKQREAVAAPLEN-LLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTF 63
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR 346
T AA+EMR RI ++ TA + TFH ++ R+H + +F I Q+R
Sbjct: 64 TNKAAAEMRGRIEELM-HGTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQR 122
Query: 347 AIIEAVR 353
+ ++
Sbjct: 123 LLKRLIK 129
Score = 38 (18.4 bits), Expect = 2.1e-35, Sum P(3) = 2.1e-35
Identities = 28/132 (21%), Positives = 58/132 (43%)
Query: 716 KISGTFKRSQLTQGRKVLLTLEMISKLVR-----REPSISAVITSVANMVPQKYLL--EQ 768
K SG + Q +G K +E + +LV +P + +T + + L E
Sbjct: 486 KTSGLLEMYQQEKGEKSKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAALEAGEG 545
Query: 769 RAVVDFDGGKL--LNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC-INVL 825
+A D +L L+ L L +++ V + + +A+E G ++++++ C + +
Sbjct: 546 QADEHDDAVQLMTLHSAKGLEFPLVFMVG-VEEGMFPSQMSAEEAGRLEEERRLCYVGMT 604
Query: 826 KAFID-YISERE 836
+A YI+ E
Sbjct: 605 RAMQKLYITYAE 616
>TIGR_CMR|VC_0190 [details] [associations]
symbol:VC_0190 "DNA helicase II" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR000212 InterPro:IPR005753 InterPro:IPR014016
InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198
PROSITE:PS51217 GO:GO:0005524 GO:GO:0005737 GO:GO:0003677
GenomeReviews:AE003852_GR GO:GO:0006281 HSSP:P09980 GO:GO:0004003
PANTHER:PTHR11070 GO:GO:0006268 Gene3D:1.10.10.160
InterPro:IPR013986 KO:K03657 OMA:ASPHSIL ProtClustDB:PRK11773
TIGRFAMs:TIGR01075 EMBL:AE004109 PIR:E82353 RefSeq:NP_229847.1
ProteinModelPortal:Q9KVF6 SMR:Q9KVF6 DNASU:2614699 GeneID:2614699
KEGG:vch:VC0190 PATRIC:20079426 Uniprot:Q9KVF6
Length = 723
Score = 342 (125.4 bits), Expect = 7.6e-49, Sum P(3) = 7.6e-49
Identities = 82/267 (30%), Positives = 144/267 (53%)
Query: 415 KASGKTPAEFRKIGDEIGAAILENYNGILRSCNA---LDYHDLISCSVKLLSTFPEVFQE 471
K G P D + L+ Y +C+ +D+ +++ +++LL + +
Sbjct: 151 KDEGLRPTHINAF-DPVTQTYLKLYTAYQEACDRAGLVDFAEILLRALELLRGNQHIREH 209
Query: 472 YQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDSFRK 530
YQ +K I+VDEFQDT+A+QY+ L+++A + + + IVGDDDQSI+ + GA + + F +
Sbjct: 210 YQARFKHILVDEFQDTNAIQYAWLRMMAGAQSNVMIVGDDDQSIYGWRGARVENIEKFTR 269
Query: 531 DFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDA 590
+F + IRL +NYRST+ I+EA+++LI +N +R K + TD G I + +NE
Sbjct: 270 EFPSVNTIRLEQNYRSTKTILEASNTLIANNSERMG-KQLWTDGLVGEPISVYSAYNELD 328
Query: 591 QCAFIIDKILE-HASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG-VAFY 648
+ F++ KI G + C AILYR +V + A + + + I+G + F+
Sbjct: 329 EARFVVSKIKGWQEQGGTLTDC-----AILYRNNAQSRVLEEALLQASLAYRIYGGMRFF 383
Query: 649 RKKVVRAIIAMLRTTLPGCDDGPYRRV 675
++ ++ ++ LR DD + RV
Sbjct: 384 ERQEIKDALSYLRLINNRNDDTAFERV 410
Score = 167 (63.8 bits), Expect = 7.6e-49, Sum P(3) = 7.6e-49
Identities = 51/152 (33%), Positives = 80/152 (52%)
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
+ +L AF+ + + E + HD+ +V L T+H +KGLE+ +VF+ E P
Sbjct: 528 MTMLTAFLTHAA-LEAGEGQADEHDD--AVQLMTLHSAKGLEFPLVFMVGVEEGMFPS-- 582
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSRFLKEIPHH 938
+ E G +EEERRL YV MTRA +KL+I Y M + + +PSRF++E+P
Sbjct: 583 --QMSAEEAGR-LEEERRLCYVGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPEG 639
Query: 939 -LREVQAEQSVQDQHENIPEGTAQFTINLPRE 969
L EV+ + V P T +F+ + +E
Sbjct: 640 CLDEVRMKAQVSR-----PTSTGRFSQTVVKE 666
Score = 134 (52.2 bits), Expect = 7.6e-49, Sum P(3) = 7.6e-49
Identities = 41/127 (32%), Positives = 61/127 (48%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTF 286
S L LND+Q EA + LLI+AG GSGK SP +++A+TF
Sbjct: 5 SLLLDGLNDKQREAVAAPLEN-LLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTF 63
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR 346
T AA+EMR RI ++ TA + TFH ++ R+H + +F I Q+R
Sbjct: 64 TNKAAAEMRGRIEELM-HGTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQR 122
Query: 347 AIIEAVR 353
+ ++
Sbjct: 123 LLKRLIK 129
Score = 38 (18.4 bits), Expect = 2.1e-35, Sum P(3) = 2.1e-35
Identities = 28/132 (21%), Positives = 58/132 (43%)
Query: 716 KISGTFKRSQLTQGRKVLLTLEMISKLVR-----REPSISAVITSVANMVPQKYLL--EQ 768
K SG + Q +G K +E + +LV +P + +T + + L E
Sbjct: 486 KTSGLLEMYQQEKGEKSKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAALEAGEG 545
Query: 769 RAVVDFDGGKL--LNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC-INVL 825
+A D +L L+ L L +++ V + + +A+E G ++++++ C + +
Sbjct: 546 QADEHDDAVQLMTLHSAKGLEFPLVFMVG-VEEGMFPSQMSAEEAGRLEEERRLCYVGMT 604
Query: 826 KAFID-YISERE 836
+A YI+ E
Sbjct: 605 RAMQKLYITYAE 616
>TIGR_CMR|APH_0903 [details] [associations]
symbol:APH_0903 "helicase, UvrD/Rep family" species:212042
"Anaplasma phagocytophilum HZ" [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISS] [GO:0006268 "DNA unwinding
involved in replication" evidence=ISS] InterPro:IPR000212
InterPro:IPR014016 InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361
PROSITE:PS51198 PROSITE:PS51217 GO:GO:0005524 GO:GO:0003677
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0004003
PANTHER:PTHR11070 eggNOG:COG0210 KO:K03657 OMA:ASPHSIL
HOGENOM:HOG000033016 ProtClustDB:CLSK749571 RefSeq:YP_505476.1
ProteinModelPortal:Q2GJH5 STRING:Q2GJH5 GeneID:3929935
KEGG:aph:APH_0903 PATRIC:20950514
BioCyc:APHA212042:GHPM-916-MONOMER Uniprot:Q2GJH5
Length = 659
Score = 324 (119.1 bits), Expect = 1.3e-48, Sum P(3) = 1.3e-48
Identities = 78/258 (30%), Positives = 135/258 (52%)
Query: 420 TPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAI 479
T E ++ + + E Y L++ N D+ DL+ +V +LS P+V YQ+ + +
Sbjct: 176 TETELQRSSNSFALRVYEEYQERLKALNCADFGDLLLHNVTILSANPDVLAHYQEHLRYV 235
Query: 480 IVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEI 538
+VDE+QD + +QY L++L H + VGDDDQSI+++ GA++ F DF + K I
Sbjct: 236 MVDEYQDINTIQYLWLRLLVRRHKNLCCVGDDDQSIYNWRGAEVGNILRFSDDFPDAKVI 295
Query: 539 RLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDK 598
RL NYRST I+ +AS++I +N R + K + T N G K+ + + + + +I
Sbjct: 296 RLECNYRSTSNILASASAIIDNNKSRLK-KTLWTHNQAGQKVGLMKFFDGRLEAQYIS-- 352
Query: 599 ILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVAFYRKKVVRAII 657
EH + + + A+L R +VF+ F IP+ I G FY + +R ++
Sbjct: 353 --EHIKS--SYDYKFSETAVLVRASFQTRVFEEFFVRYGIPYKIIGGTKFYDRVEIRDLV 408
Query: 658 AMLRTTLPGCDDGPYRRV 675
A L+ + +D + ++
Sbjct: 409 AYLKVVVNPNNDIAFEKI 426
Score = 164 (62.8 bits), Expect = 1.3e-48, Sum P(3) = 1.3e-48
Identities = 47/118 (39%), Positives = 73/118 (61%)
Query: 828 FIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAV 887
F+++IS E+ + DN N V + T+H +KGLE+ +VF+ E P HE ++
Sbjct: 540 FLEHIS-LVAENDSLEE-DN-NYVHVMTLHAAKGLEFPLVFLPGWEEGVFP--HE--KSM 592
Query: 888 NE-KGTSVEEERRLLYVAMTRARKKLFILYVMMDA--NW-QLLQPSRFLKEIPH-HLR 940
N+ G ++EEERRL YV +TRAR++L+I M NW Q ++ SRF+KE+P H++
Sbjct: 593 NDITGNALEEERRLAYVGITRAREQLYISCAAMREINNWSQSMKMSRFIKELPREHVQ 650
Score = 151 (58.2 bits), Expect = 1.3e-48, Sum P(3) = 1.3e-48
Identities = 49/139 (35%), Positives = 73/139 (52%)
Query: 223 MEKTDTIQTIKT-QNMPDEYSK-YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK------ 274
ME D Q T Q + + Y + ++ +LN +Q EA ++ P+LI+AG G+GK
Sbjct: 1 MEYRDFPQANCTSQQVEEHYPEDFMLNLNAEQKEAVL-QVAGPVLILAGAGTGKTRTITA 59
Query: 275 --------GIS-PSNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRS 325
G + P ILA+TFT AA EM R+ +IV TA + + TFH+ + ++ RS
Sbjct: 60 RMGHIIKEGYAQPHEILAVTFTNKAAKEMLSRVNNIV---TASGIWLGTFHAIAARILRS 116
Query: 326 HAEKLERTSEFLIYGHGQQ 344
HAE + +S F I Q
Sbjct: 117 HAELVGLSSNFTIISPDDQ 135
>UNIPROTKB|Q0BY27 [details] [associations]
symbol:HNE_2938 "Putative DNA helicase II" species:228405
"Hyphomonas neptunium ATCC 15444" [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] InterPro:IPR000212 InterPro:IPR014016
InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198
PROSITE:PS51217 GO:GO:0005524 GO:GO:0003677 GO:GO:0006281
GO:GO:0004003 PANTHER:PTHR11070 EMBL:CP000158
GenomeReviews:CP000158_GR Gene3D:1.10.10.160 InterPro:IPR013986
eggNOG:COG0210 KO:K03657 OMA:ASPHSIL HOGENOM:HOG000033016
RefSeq:YP_761616.1 ProteinModelPortal:Q0BY27 STRING:Q0BY27
GeneID:4287552 KEGG:hne:HNE_2938 PATRIC:32218745
ProtClustDB:CLSK2781007 BioCyc:HNEP228405:GI69-2945-MONOMER
Uniprot:Q0BY27
Length = 781
Score = 327 (120.2 bits), Expect = 1.8e-48, Sum P(3) = 1.8e-48
Identities = 86/263 (32%), Positives = 132/263 (50%)
Query: 421 PAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAII 480
P E G+ E Y LR NA D+ DL+ ++ + P++ +EY D ++ I+
Sbjct: 187 PEEAELFGNGKAIKCYEIYQARLRVLNACDFGDLLIHNITIFQESPDILREYHDRFRYIL 246
Query: 481 VDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIR 539
VDE+QDT+ QY L++LA ++ + VGDDDQSI+ + GA++ F KDF K +R
Sbjct: 247 VDEYQDTNVAQYLWLRLLAQGSKNLCCVGDDDQSIYGWRGAEVDNILRFEKDFPGAKVVR 306
Query: 540 LTRNYRSTRCIVEAASSLIQHNV----KRCQLKN--VQTDNSHGSKIIIKECHNEDAQCA 593
L RNYRSTR I+ AASS+I HN K + N +++ K+ ++ + +A+
Sbjct: 307 LERNYRSTRHILAAASSVIAHNKGRLGKTLYVGNDSAVNEDTDAPKVKVRGLWDGEAESR 366
Query: 594 FIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFYRKKV 652
I D I G + A+L R + F+ F IP+ I G F+ +
Sbjct: 367 LIADDIESWVRGGGR----HDGCAVLVRASWQMRAFEERFILLGIPYRVIGGPRFFERAE 422
Query: 653 VRAIIAMLRTTLPGCDDGPYRRV 675
+R +A LR DD + RV
Sbjct: 423 IRDAMAYLRLIRSPDDDLAFERV 445
Score = 171 (65.3 bits), Expect = 1.8e-48, Sum P(3) = 1.8e-48
Identities = 39/102 (38%), Positives = 60/102 (58%)
Query: 846 DNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTS-VEEERRLLYVA 904
+ E+ V + T+H +KGLEW +VF+ E P +++E G +EEERRL YV
Sbjct: 576 NGEDQVQILTLHAAKGLEWPVVFLPGWEEEVFPS----RRSLDESGLKGLEEERRLAYVG 631
Query: 905 MTRARKKLFILYV---MMDANWQLLQPSRFLKEIP-HHLREV 942
+TRAR++ +I +V + WQ + PSRF+ E+P H+ V
Sbjct: 632 ITRARERCYISFVANRQIYGRWQAVMPSRFIDELPPEHVDAV 673
Score = 145 (56.1 bits), Expect = 1.8e-48, Sum P(3) = 1.8e-48
Identities = 46/129 (35%), Positives = 63/129 (48%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG----------IS-----PSNILAMTFTT 288
YL LN +Q +A PLL++AG G+GK ++ PS L +TFT
Sbjct: 31 YLNGLNPEQRDAVL-HTEGPLLVLAGAGTGKTRVLTSRLAHIVATRLAYPSQTLTVTFTN 89
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA EMR+R +++G A + TFHS S Q+ R HAE + S F I Q R
Sbjct: 90 KAAREMRERAQALLGDAGEGLRWLGTFHSISAQILRKHAELVGLKSSFTILDTDDQIRLC 149
Query: 349 IEAVRLLEN 357
+ V+ EN
Sbjct: 150 KQIVQA-EN 157
Score = 37 (18.1 bits), Expect = 1.9e-17, Sum P(3) = 1.9e-17
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 773 DFDGGKLLNEDNDLRSVLQYLLADVTDFLS 802
DF G K++ + + RS +++LA + ++
Sbjct: 298 DFPGAKVVRLERNYRST-RHILAAASSVIA 326
>TIGR_CMR|SO_0467 [details] [associations]
symbol:SO_0467 "DNA helicase II" species:211586 "Shewanella
oneidensis MR-1" [GO:0003678 "DNA helicase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] InterPro:IPR000212
InterPro:IPR005753 InterPro:IPR014016 InterPro:IPR014017
Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198 PROSITE:PS51217
GO:GO:0005524 GO:GO:0005737 GO:GO:0003677 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0004003 PANTHER:PTHR11070
HSSP:P56255 GO:GO:0006268 Gene3D:1.10.10.160 InterPro:IPR013986
KO:K03657 HOGENOM:HOG000033016 ProtClustDB:PRK11773
TIGRFAMs:TIGR01075 OMA:CYELLRY RefSeq:NP_716104.1
ProteinModelPortal:Q8EJJ6 SMR:Q8EJJ6 GeneID:1168340
KEGG:son:SO_0467 PATRIC:23520629 Uniprot:Q8EJJ6
Length = 722
Score = 328 (120.5 bits), Expect = 5.4e-48, Sum P(3) = 5.4e-48
Identities = 87/281 (30%), Positives = 145/281 (51%)
Query: 402 QYNKFERDG-MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNA---LDYHDLISC 457
QY + G ++ K G P G I +L+ Y SC+ +D+ +++
Sbjct: 136 QYPPRQAQGYINGKKDQGLRPKHIDAGGFPIEQNLLKIYQVYQESCDRAGLVDFAEILLR 195
Query: 458 SVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-RITIVGDDDQSIFS 516
+ +L P + YQ+ +K I+VDEFQDT+A+QY+ +++LA + IVGDDDQSI+
Sbjct: 196 AHELWLNKPHLLAHYQERFKHILVDEFQDTNAIQYAWIRMLAGQTANVMIVGDDDQSIYG 255
Query: 517 FNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSH 576
+ GA + F KDF IRL +NYRS I++A+++LI +N +R K + TD +
Sbjct: 256 WRGAQVENLHRFLKDFPTATTIRLEQNYRSKGNILKASNALIANNPERLG-KELWTDEAD 314
Query: 577 GSKIIIKECHNEDAQCAFIIDKILE-HASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G I + NE + FI+ +I + + G S C AILYR +V + A
Sbjct: 315 GEPISLYCAFNEMDEARFIVGRINDWYEKGGNLSDC-----AILYRSNAQSRVLEEALLH 369
Query: 636 RKIPFNIHG-VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRV 675
+ + + I+G + F+ ++ ++ + +R DD + RV
Sbjct: 370 KGLAYRIYGGLRFFERQEIKDAMGYMRLISNKNDDAAFERV 410
Score = 162 (62.1 bits), Expect = 5.4e-48, Sum P(3) = 5.4e-48
Identities = 44/128 (34%), Positives = 67/128 (52%)
Query: 831 YISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEK 890
++S E Q ++V L T+H +KGLE+ +VF+A E P + E+
Sbjct: 534 FLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFTMVFMAGVEEGIFP-----SKMALEE 588
Query: 891 GTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP-HHLREVQAEQ 946
G ++EERRL YV MTRA +KL+I Y + +PSRF+KEIP ++ E++ +
Sbjct: 589 GDRLDEERRLCYVGMTRAMEKLYITYAESRRIYGREDYARPSRFIKEIPPQYVDEIRLKA 648
Query: 947 SVQDQHEN 954
V N
Sbjct: 649 QVSTPMAN 656
Score = 146 (56.5 bits), Expect = 5.4e-48, Sum P(3) = 5.4e-48
Identities = 45/136 (33%), Positives = 67/136 (49%)
Query: 240 EYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKGI---------------SPSNILAM 284
+ S L LND+Q EA S+ +L++AG GSGK SP +ILA+
Sbjct: 2 DVSSLLDGLNDKQREAVAAPQSS-MLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAV 60
Query: 285 TFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQ 344
TFT AA+EMR+R+ + G + + I TFH + +L R+H + F I Q
Sbjct: 61 TFTNKAAAEMRERVEKVAGTNMGR-MWIGTFHGLAHRLLRTHFQDAGLPQSFQILDSDDQ 119
Query: 345 RRAIIEAVRLLE-NEK 359
R + ++ L +EK
Sbjct: 120 LRLLKRILKSLNLDEK 135
Score = 45 (20.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 13/52 (25%), Positives = 29/52 (55%)
Query: 1075 YAEYVLRWEKIPADQRAHMIREKQEHFQKLRIENSMGSSAPTSKQIAFLRSL 1126
+AE +LR ++ + + H++ QE F+ + ++ ++A Q A++R L
Sbjct: 189 FAEILLRAHELWLN-KPHLLAHYQERFKHILVDEFQDTNAI---QYAWIRML 236
>UNIPROTKB|P03018 [details] [associations]
symbol:uvrD "DNA-dependent ATPase I and helicase II"
species:83333 "Escherichia coli K-12" [GO:0006268 "DNA unwinding
involved in replication" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0009432
"SOS response" evidence=IEA] InterPro:IPR000212 InterPro:IPR005753
InterPro:IPR014016 InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361
PROSITE:PS51198 PROSITE:PS51217 GO:GO:0005524 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006281 GO:GO:0004003
PANTHER:PTHR11070 EMBL:M87049 GO:GO:0009432 EMBL:M38257
GO:GO:0006268 Gene3D:1.10.10.160 InterPro:IPR013986 eggNOG:COG0210
KO:K03657 OMA:ASPHSIL HOGENOM:HOG000033016 EMBL:X00738 EMBL:D00069
EMBL:X04037 EMBL:X00225 PIR:F65185 RefSeq:NP_418258.1
RefSeq:YP_491628.1 PDB:2IS1 PDB:2IS2 PDB:2IS4 PDB:2IS6 PDB:3LFU
PDBsum:2IS1 PDBsum:2IS2 PDBsum:2IS4 PDBsum:2IS6 PDBsum:3LFU
ProteinModelPortal:P03018 SMR:P03018 DIP:DIP-11103N IntAct:P03018
MINT:MINT-1223204 PaxDb:P03018 PRIDE:P03018
EnsemblBacteria:EBESCT00000002457 EnsemblBacteria:EBESCT00000002458
EnsemblBacteria:EBESCT00000015898 GeneID:12934346 GeneID:948347
KEGG:ecj:Y75_p3364 KEGG:eco:b3813 PATRIC:32123127 EchoBASE:EB1057
EcoGene:EG11064 ProtClustDB:PRK11773 BioCyc:EcoCyc:EG11064-MONOMER
BioCyc:ECOL316407:JW3786-MONOMER BioCyc:MetaCyc:EG11064-MONOMER
EvolutionaryTrace:P03018 Genevestigator:P03018 TIGRFAMs:TIGR01075
Uniprot:P03018
Length = 720
Score = 345 (126.5 bits), Expect = 6.0e-48, Sum P(3) = 6.0e-48
Identities = 82/266 (30%), Positives = 140/266 (52%)
Query: 415 KASGKTPAEFRKIGDEIGAAILENYNGILRSCNA---LDYHDLISCSVKLLSTFPEVFQE 471
K G P + G+ + + Y +C+ +D+ +L+ + +L P + Q
Sbjct: 150 KDEGLRPHHIQSYGNPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQH 209
Query: 472 YQDSWKAIIVDEFQDTSAMQYSLLQILASHN-RITIVGDDDQSIFSFNGADISGFDSFRK 530
Y++ + I+VDEFQDT+ +QY+ +++LA ++ IVGDDDQSI+ + GA + F
Sbjct: 210 YRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMIVGDDDQSIYGWRGAQVENIQRFLN 269
Query: 531 DFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDA 590
DF + IRL +NYRST I+ AA++LI++N R K + TD + G I + NE
Sbjct: 270 DFPGAETIRLEQNYRSTSNILSAANALIENNNGRLG-KKLWTDGADGEPISLYCAFNELD 328
Query: 591 QCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG-VAFYR 649
+ F++++I NG A AILYR +V + A + +P+ I+G + F+
Sbjct: 329 EARFVVNRIKTWQDNGGA----LAECAILYRSNAQSRVLEEALLQASMPYRIYGGMRFFE 384
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRV 675
++ ++ ++ LR DD + RV
Sbjct: 385 RQEIKDALSYLRLIANRNDDAAFERV 410
Score = 154 (59.3 bits), Expect = 6.0e-48, Sum P(3) = 6.0e-48
Identities = 48/137 (35%), Positives = 69/137 (50%)
Query: 240 EYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAM 284
+ S L SLND+Q EA S LL++AG GSGK SP +I+A+
Sbjct: 2 DVSYLLDSLNDKQREAVAAPRSN-LLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAV 60
Query: 285 TFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQ 344
TFT AA+EMR RIG ++G + + + TFH + +L R+H +F I Q
Sbjct: 61 TFTNKAAAEMRHRIGQLMGTSQGG-MWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQ 119
Query: 345 RRAI---IEAVRLLENE 358
R + I+A+ L E +
Sbjct: 120 LRLLKRLIKAMNLDEKQ 136
Score = 135 (52.6 bits), Expect = 6.0e-48, Sum P(3) = 6.0e-48
Identities = 44/147 (29%), Positives = 74/147 (50%)
Query: 806 TAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWD 865
TA ++ ++D+ + L+AF+ + + E Q +++V L T+H +KGLE+
Sbjct: 514 TATRQFSYNEEDED--LMPLQAFLSHAALEAGEG---QADTWQDAVQLMTLHSAKGLEFP 568
Query: 866 IVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDAN 922
VF+ E P ++G +EEERRL YV +TRA +KL + Y +
Sbjct: 569 QVFIVGMEEGMFPSQMSL-----DEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGK 623
Query: 923 WQLLQPSRFLKEIPHH-LREVQAEQSV 948
+PSRF+ E+P + EV+ +V
Sbjct: 624 EVYHRPSRFIGELPEECVEEVRLRATV 650
>UNIPROTKB|Q48BM1 [details] [associations]
symbol:uvrD "DNA helicase II" species:264730 "Pseudomonas
syringae pv. phaseolicola 1448A" [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] InterPro:IPR000212 InterPro:IPR014016
InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198
PROSITE:PS51217 GO:GO:0005524 GO:GO:0003677 GO:GO:0006281
GO:GO:0004003 PANTHER:PTHR11070 EMBL:CP000058
GenomeReviews:CP000058_GR Gene3D:1.10.10.160 InterPro:IPR013986
eggNOG:COG0210 KO:K03657 OMA:ASPHSIL HOGENOM:HOG000033016
ProtClustDB:PRK11773 RefSeq:YP_277224.1 ProteinModelPortal:Q48BM1
SMR:Q48BM1 STRING:Q48BM1 GeneID:3557068 KEGG:psp:PSPPH_5147
PATRIC:19979844 Uniprot:Q48BM1
Length = 727
Score = 323 (118.8 bits), Expect = 1.7e-47, Sum P(3) = 1.7e-47
Identities = 82/266 (30%), Positives = 134/266 (50%)
Query: 415 KASGKTPAEFRKIGD---EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQE 471
K G P + GD ++ E Y + +D+ +L+ ++ L P +
Sbjct: 152 KDEGLRPKHIQASGDLFLTTMKSVYEAYEVACQRAGVIDFSELLLRALDLWRDNPGLLAH 211
Query: 472 YQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSFRK 530
YQ ++ ++VDEFQDT+A+QY+ L++LA + + +VGDDDQSI+ + GA I +
Sbjct: 212 YQRRFRHVLVDEFQDTNAVQYAWLRLLAQGGDSLMVVGDDDQSIYGWRGAKIENIHQYSS 271
Query: 531 DFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDA 590
DF + + IRL +NYRST I++AA+ LI +N R K + TD G I + NE
Sbjct: 272 DFPDTEVIRLEQNYRSTASILKAANGLIVNNSGRLG-KELWTDVGDGELINLYAAFNEHD 330
Query: 591 QCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG-VAFYR 649
+ ++++ I G S IAILYR +V + A +IP+ I+G F+
Sbjct: 331 EARYVVETIESALKTG----ISRNDIAILYRSNAQSRVLEEALLRERIPYRIYGGQRFFE 386
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRV 675
+ ++ +A +R +D RV
Sbjct: 387 RAEIKNAMAYMRLLEGRGNDAALERV 412
Score = 160 (61.4 bits), Expect = 1.7e-47, Sum P(3) = 1.7e-47
Identities = 53/164 (32%), Positives = 85/164 (51%)
Query: 806 TAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWD 865
+AA+ N + ++ + L AF+ + S E TQ ++E+S+ L T+H +KGLE+
Sbjct: 516 SAARAFENHESEED--LTPLAAFLGHAS---LEAGDTQAQEHEDSIQLMTLHSAKGLEFP 570
Query: 866 IVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDAN 922
VF+ E P H+ + + E G +EEERRL YV +TRA K+L + Y + +
Sbjct: 571 HVFLVGMEEGLFP--HKMS--LEEPGR-LEEERRLAYVGITRAMKQLVMTYAETRRLYGS 625
Query: 923 WQLLQPSRFLKEIPHHL-REVQAEQSVQDQHENIPEGTAQFTIN 965
+ SRF++EIP L +EV+ SV P+ + N
Sbjct: 626 ETYNKVSRFVREIPPALIQEVRLSNSVSRPFGGTPKFNSSSLFN 669
Score = 149 (57.5 bits), Expect = 1.7e-47, Sum P(3) = 1.7e-47
Identities = 44/134 (32%), Positives = 67/134 (50%)
Query: 237 MPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNI 281
M D+ S L SLND Q +A + L ++AG GSGK SP ++
Sbjct: 1 MRDDLSLLLNSLNDAQRQAVAASLGRQL-VLAGAGSGKTRVLVHRIAWLMQVEQASPHSV 59
Query: 282 LAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGH 341
L++TFT AA+EMR RI ++G + A + + TFH + +L R+H ++ F I
Sbjct: 60 LSVTFTNKAAAEMRHRIEQLMGISPAG-MWVGTFHGLAHRLLRAHWQEAGLVQTFQILDS 118
Query: 342 GQQRRAIIEAVRLL 355
Q+R + +R L
Sbjct: 119 DDQQRLVKRVMREL 132
Score = 43 (20.2 bits), Expect = 2.0e-17, Sum P(3) = 2.0e-17
Identities = 16/67 (23%), Positives = 32/67 (47%)
Query: 728 QGRKVLLTLEMISKLVRREPSISAVITSVA-NMVPQKYLLEQRAVVDFDGGKLLNEDNDL 786
+ R V+ T+E K I+ + S A + V ++ LL +R GG+ E ++
Sbjct: 331 EARYVVETIESALKTGISRNDIAILYRSNAQSRVLEEALLRERIPYRIYGGQRFFERAEI 390
Query: 787 RSVLQYL 793
++ + Y+
Sbjct: 391 KNAMAYM 397
>UNIPROTKB|Q5LU84 [details] [associations]
symbol:SPO1174 "DNA helicase II, putative" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR000212 InterPro:IPR014016 InterPro:IPR014017
Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198 PROSITE:PS51217
GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0004003 PANTHER:PTHR11070 Gene3D:1.10.10.160
InterPro:IPR013986 KO:K03657 HOGENOM:HOG000033016
RefSeq:YP_166421.1 ProteinModelPortal:Q5LU84 GeneID:3195921
KEGG:sil:SPO1174 PATRIC:23375655 OMA:CYELLRY ProtClustDB:CLSK933453
Uniprot:Q5LU84
Length = 779
Score = 332 (121.9 bits), Expect = 4.5e-45, Sum P(3) = 4.5e-45
Identities = 91/273 (33%), Positives = 140/273 (51%)
Query: 409 DGM-DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
DG + A K PA + G + Y LR NA+D+ DL+ V + T P+
Sbjct: 150 DGWKNKALTPDKLPAAEAGAYNHRGPELYAQYQTRLRELNAVDFGDLLLHMVTIFQTHPD 209
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFD 526
V ++YQ ++ ++VDE+QDT+ QY L++LA H I VGDDDQSI+ + GA++
Sbjct: 210 VLEQYQRWFRYVLVDEYQDTNIAQYLWLRLLAGGHRNICCVGDDDQSIYGWRGAEVGNIL 269
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI-IIKEC 585
F KDF +RL +NYRST I+ AAS++I+ N R K + TD G K+ +I
Sbjct: 270 RFEKDFPGAHVVRLEQNYRSTPHILAAASNVIRGNEGRLG-KELWTDAQEGEKVRLIGHW 328
Query: 586 HNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-I 642
E+ + +I ++I ++ + G I S +AIL R + F+ F +P+ I
Sbjct: 329 DGEE-EARWIGEEIEAMQGGTRGVRPI-SLDEMAILVRAAHQMRAFEDRFLTIGLPYKVI 386
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRV 675
G FY + +R +A R DD + R+
Sbjct: 387 GGPRFYERMEIRDAMAYFRLVTSPEDDLAFERI 419
Score = 155 (59.6 bits), Expect = 4.5e-45, Sum P(3) = 4.5e-45
Identities = 44/125 (35%), Positives = 66/125 (52%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GIS-PSNILAMTFTT 288
YL LN Q EA + P+L++AG G+GK G + P+ ILA+TFT
Sbjct: 8 YLDDLNPAQREAV-ERLDGPVLMLAGAGTGKTKALTARIVHLLMTGRARPNEILAVTFTN 66
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA EM++R+G ++G+ + TFHS ++L R HAE ++ S F I Q R +
Sbjct: 67 KAAREMKNRVGRLLGQPAEGMPWLGTFHSICVKLLRRHAELVDLKSNFTILDTDDQLRLL 126
Query: 349 IEAVR 353
+ V+
Sbjct: 127 KQLVQ 131
Score = 123 (48.4 bits), Expect = 4.5e-45, Sum P(3) = 4.5e-45
Identities = 34/96 (35%), Positives = 51/96 (53%)
Query: 851 VTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTS-VEEERRLLYVAMTRAR 909
V++ T+H +KGLE+ VF+ + P +++E G +EEERRL YV +TRA
Sbjct: 577 VSIMTLHAAKGLEFPAVFLPGWEDGLFPSQR----SMDESGLKGLEEERRLAYVGITRAE 632
Query: 910 KKLFILYVM---MDANWQLLQPSRFLKEIPHHLREV 942
+ I + + WQ PSRF+ E+P EV
Sbjct: 633 EVCTISFAANRRVFGQWQNALPSRFIDELPEDHVEV 668
>TIGR_CMR|SPO_1174 [details] [associations]
symbol:SPO_1174 "DNA helicase II, putative" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR000212 InterPro:IPR014016 InterPro:IPR014017
Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198 PROSITE:PS51217
GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0004003 PANTHER:PTHR11070 Gene3D:1.10.10.160
InterPro:IPR013986 KO:K03657 HOGENOM:HOG000033016
RefSeq:YP_166421.1 ProteinModelPortal:Q5LU84 GeneID:3195921
KEGG:sil:SPO1174 PATRIC:23375655 OMA:CYELLRY ProtClustDB:CLSK933453
Uniprot:Q5LU84
Length = 779
Score = 332 (121.9 bits), Expect = 4.5e-45, Sum P(3) = 4.5e-45
Identities = 91/273 (33%), Positives = 140/273 (51%)
Query: 409 DGM-DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
DG + A K PA + G + Y LR NA+D+ DL+ V + T P+
Sbjct: 150 DGWKNKALTPDKLPAAEAGAYNHRGPELYAQYQTRLRELNAVDFGDLLLHMVTIFQTHPD 209
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFD 526
V ++YQ ++ ++VDE+QDT+ QY L++LA H I VGDDDQSI+ + GA++
Sbjct: 210 VLEQYQRWFRYVLVDEYQDTNIAQYLWLRLLAGGHRNICCVGDDDQSIYGWRGAEVGNIL 269
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI-IIKEC 585
F KDF +RL +NYRST I+ AAS++I+ N R K + TD G K+ +I
Sbjct: 270 RFEKDFPGAHVVRLEQNYRSTPHILAAASNVIRGNEGRLG-KELWTDAQEGEKVRLIGHW 328
Query: 586 HNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-I 642
E+ + +I ++I ++ + G I S +AIL R + F+ F +P+ I
Sbjct: 329 DGEE-EARWIGEEIEAMQGGTRGVRPI-SLDEMAILVRAAHQMRAFEDRFLTIGLPYKVI 386
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRV 675
G FY + +R +A R DD + R+
Sbjct: 387 GGPRFYERMEIRDAMAYFRLVTSPEDDLAFERI 419
Score = 155 (59.6 bits), Expect = 4.5e-45, Sum P(3) = 4.5e-45
Identities = 44/125 (35%), Positives = 66/125 (52%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GIS-PSNILAMTFTT 288
YL LN Q EA + P+L++AG G+GK G + P+ ILA+TFT
Sbjct: 8 YLDDLNPAQREAV-ERLDGPVLMLAGAGTGKTKALTARIVHLLMTGRARPNEILAVTFTN 66
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA EM++R+G ++G+ + TFHS ++L R HAE ++ S F I Q R +
Sbjct: 67 KAAREMKNRVGRLLGQPAEGMPWLGTFHSICVKLLRRHAELVDLKSNFTILDTDDQLRLL 126
Query: 349 IEAVR 353
+ V+
Sbjct: 127 KQLVQ 131
Score = 123 (48.4 bits), Expect = 4.5e-45, Sum P(3) = 4.5e-45
Identities = 34/96 (35%), Positives = 51/96 (53%)
Query: 851 VTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTS-VEEERRLLYVAMTRAR 909
V++ T+H +KGLE+ VF+ + P +++E G +EEERRL YV +TRA
Sbjct: 577 VSIMTLHAAKGLEFPAVFLPGWEDGLFPSQR----SMDESGLKGLEEERRLAYVGITRAE 632
Query: 910 KKLFILYVM---MDANWQLLQPSRFLKEIPHHLREV 942
+ I + + WQ PSRF+ E+P EV
Sbjct: 633 EVCTISFAANRRVFGQWQNALPSRFIDELPEDHVEV 668
>TIGR_CMR|SO_4325 [details] [associations]
symbol:SO_4325 "ATP-dependent DNA helicase Rep"
species:211586 "Shewanella oneidensis MR-1" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] InterPro:IPR000212
InterPro:IPR005752 InterPro:IPR014016 InterPro:IPR014017
Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198 PROSITE:PS51217
GO:GO:0005524 GO:GO:0005737 GO:GO:0003677 EMBL:AE014299
GenomeReviews:AE014299_GR HSSP:P09980 GO:GO:0004003
PANTHER:PTHR11070 GO:GO:0006268 Gene3D:1.10.10.160
InterPro:IPR013986 HOGENOM:HOG000033015 KO:K03656 OMA:VCTFHAL
TIGRFAMs:TIGR01074 RefSeq:NP_719850.1 ProteinModelPortal:Q8E9F8
SMR:Q8E9F8 GeneID:1171930 KEGG:son:SO_4325 PATRIC:23528306
ProtClustDB:CLSK907596 Uniprot:Q8E9F8
Length = 671
Score = 323 (118.8 bits), Expect = 4.3e-43, Sum P(3) = 4.3e-43
Identities = 81/261 (31%), Positives = 140/261 (53%)
Query: 421 PAEFRKIG-DE---IGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSW 476
P + RK+ DE + A + + Y +++ NALD+ DLI LL EV +Q
Sbjct: 149 PDQARKLAKDEQQQLFALLYQRYAQHMKAYNALDFDDLILLPTLLLRHHEEVRTRWQTKI 208
Query: 477 KAIIVDEFQDTSAMQYSLLQILASHN-RITIVGDDDQSIFSFNGADISGFDSFRKDFLNY 535
+ ++VDE+QDT+ QY ++++L R T+VGDDDQSI+S+ GA KDF
Sbjct: 209 QYLLVDEYQDTNTSQYEMVKLLVGERARFTVVGDDDQSIYSWRGAKPQNLVLLGKDFPKL 268
Query: 536 KEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFI 595
K I+L +NYRS++ I+ AA+ LI +N K++ ++ ++G + + NE+ + +
Sbjct: 269 KLIKLEQNYRSSQRILRAANILIANN-PHVYDKSLFSELAYGEPMRVLFAANEEQEAERV 327
Query: 596 IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG-VAFYRKKVVR 654
+ +I+ H G +G AILYR ++ + A +IP+ + G +F+ + ++
Sbjct: 328 VAEIVRHKFVGRTQ---FGDYAILYRGNHQSRLLERALMTNRIPYKLSGGTSFFSRAEIK 384
Query: 655 AIIAMLRTTLPGCDDGPYRRV 675
I+ L+ + DD + RV
Sbjct: 385 DIMGYLKLVVNPDDDNAFLRV 405
Score = 138 (53.6 bits), Expect = 4.3e-43, Sum P(3) = 4.3e-43
Identities = 40/129 (31%), Positives = 66/129 (51%)
Query: 841 RTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRL 900
R + + V L T+H SKGLE+ VF+ E +P H+ + ++E +V+EERRL
Sbjct: 543 RNSEDEGGDQVQLMTLHASKGLEFPFVFMVGVEERILP--HQTS--IDED--NVDEERRL 596
Query: 901 LYVAMTRARKKLFILYVMMDANW---QLLQPSRFLKEIPHHLREVQAEQSVQDQHENIPE 957
YV +TRA+++L+ + +PSRFL E+P + + Q + E +
Sbjct: 597 AYVGITRAQRELWFTLCRERRQFGETMRCEPSRFLHELPQDDLVWENRKPQQTEQERMQT 656
Query: 958 GTAQFTINL 966
G + + NL
Sbjct: 657 GRSHIS-NL 664
Score = 126 (49.4 bits), Expect = 4.3e-43, Sum P(3) = 4.3e-43
Identities = 41/132 (31%), Positives = 68/132 (51%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN Q +A +S P L++AG GSGK G + NI A+TFT AA
Sbjct: 3 LNPAQNDAV-HYVSGPCLVLAGAGSGKTRVIINKIAYLVQKCGYNARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ +G+ A+ L ISTFH+ L++ + + L F ++ Q A+++ +
Sbjct: 62 EMKERVAQSMGRKEARGLWISTFHTLGLEIVKREHKVLGLKPGFSLFDD-QDTLALLKEL 120
Query: 353 --RLLENEKILV 362
+ L+ +K L+
Sbjct: 121 TQKELQEDKDLL 132
>TIGR_CMR|CHY_1099 [details] [associations]
symbol:CHY_1099 "ATP-dependent DNA helicase PcrA"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR000212
InterPro:IPR005751 InterPro:IPR014016 InterPro:IPR014017
Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198 PROSITE:PS51217
GO:GO:0005524 GO:GO:0005737 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0004003 PANTHER:PTHR11070
GO:GO:0006268 Gene3D:1.10.10.160 InterPro:IPR013986 eggNOG:COG0210
KO:K03657 OMA:ASPHSIL HOGENOM:HOG000033016 TIGRFAMs:TIGR01073
RefSeq:YP_359945.1 ProteinModelPortal:Q3AD39 SMR:Q3AD39
STRING:Q3AD39 GeneID:3728269 KEGG:chy:CHY_1099 PATRIC:21275336
BioCyc:CHYD246194:GJCN-1098-MONOMER Uniprot:Q3AD39
Length = 718
Score = 375 (137.1 bits), Expect = 3.1e-41, Sum P(2) = 3.1e-41
Identities = 95/271 (35%), Positives = 148/271 (54%)
Query: 413 VAKASGK--TPAEFRKIGDEI---GAAILEN-YNGILRSCNALDYHDLISCSVKLLSTFP 466
++ A K +P ++R D++ AI+ N Y L NALD+ DL+ +V+L +P
Sbjct: 144 ISSAKDKLISPRQYRDDADDLFKEKVAIIYNMYQEKLNKNNALDFDDLLYYAVRLFENYP 203
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGF 525
V + YQ +K I+VDE+QDTS QY L+ +LA H + +VGD DQSI+S+ GADI+
Sbjct: 204 RVLEYYQRRFKYILVDEYQDTSHAQYRLVNLLAQKHRNLCVVGDPDQSIYSWRGADITNI 263
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
+F +D+ K + L NYRST+ I++AA+++I N R + + T S G +
Sbjct: 264 LNFERDYPEAKVVILKENYRSTQKILDAANAVIAKNRMRKEKELFSTKES-GHPVYFYPA 322
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGV 645
+E + AF+ I +G + + IA+LYR + F+ AF +R IP+ I G
Sbjct: 323 VDEKDEAAFVALTIESLVKSGEYN---FNDIALLYRTHALSRNFEEAFMQRGIPYVIFGS 379
Query: 646 A-FYRKKVVRAIIAMLRTTLPGCDDGPYRRV 675
FY +K ++ IIA LR D +R+
Sbjct: 380 RRFYDRKEIKDIIAYLRIVANPYDKVALKRI 410
Score = 180 (68.4 bits), Expect = 8.2e-20, Sum P(2) = 8.2e-20
Identities = 60/191 (31%), Positives = 95/191 (49%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG------IS---------PSNILAMTFT 287
K L +LN Q EA PLL++AG G+GK I+ P ILA+TFT
Sbjct: 3 KLLATLNPAQREAVTHTHG-PLLVLAGAGTGKTRVLTFRIAHLLYRKMAYPHEILAITFT 61
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM++R+ ++ +A+E+ ISTFHSF+L++ R+ EKL + +F +Y Q +
Sbjct: 62 NKAAREMKERVERLIS-GSAREIWISTFHSFALRILRNDIEKLGFSRDFTVYDEEDQLQV 120
Query: 348 IIEAVRLLE-NEKILVVKRIS------TDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKL 400
I E ++ L ++K K I+ D L + + LF + ++M KL
Sbjct: 121 IKECLKELNIDDKRFAPKAIAYHISSAKDKLISPRQYRDDADDLFKEKVAIIYNMYQEKL 180
Query: 401 CQYNKFERDGM 411
+ N + D +
Sbjct: 181 NKNNALDFDDL 191
Score = 147 (56.8 bits), Expect = 3.1e-41, Sum P(2) = 3.1e-41
Identities = 47/127 (37%), Positives = 66/127 (51%)
Query: 825 LKAFIDYIS---ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
L+AF+ IS + +TE EN V + T+H +KGLE+ +VF+ E P H
Sbjct: 528 LEAFLGTISLLTDADTEE------GGENRVRMMTLHAAKGLEFPVVFLVGLEEGIFP--H 579
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQPSRFLKE 934
+ +EEERRL YV +TRA+K+L++ +Y D N +PSRFL E
Sbjct: 580 S-RAIFSIDPQELEEERRLCYVGITRAQKRLYLTRAWRRTVYGRTDFN----EPSRFLDE 634
Query: 935 IPHHLRE 941
IP L E
Sbjct: 635 IPEELIE 641
Score = 47 (21.6 bits), Expect = 9.6e-31, Sum P(2) = 9.6e-31
Identities = 27/118 (22%), Positives = 50/118 (42%)
Query: 1017 IISHLFHQWAKKKAFQEPKRLLN-----KVDFVIDER-LRVKKNKHKDVLRALKSCLSSN 1070
I+++ + + A K+ EPKR + KV+ DE L + +D AL S +
Sbjct: 397 IVANPYDKVALKRIINEPKRGIGEASFAKVEAYADETGLPIGLLLLRDEALALVSGKTRK 456
Query: 1071 EAFHYAEYVLRW-----EKIPADQRAHMIREKQEHFQKLRIENSMGSSAPTSKQIAFL 1123
+ E +L W +++ + I E+ + L+ E++M + A FL
Sbjct: 457 ALKEFGEMLL-WFRELKDRVSVTKLTEEILERSGYLPALKAEDTMEARARIENLNEFL 513
>TIGR_CMR|ECH_0860 [details] [associations]
symbol:ECH_0860 "helicase, UvrD/Rep family" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISS] [GO:0006268 "DNA unwinding
involved in replication" evidence=ISS] InterPro:IPR000212
InterPro:IPR014016 InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361
PROSITE:PS51198 PROSITE:PS51217 GO:GO:0005524 GO:GO:0003677
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0004003
PANTHER:PTHR11070 eggNOG:COG0210 KO:K03657 OMA:ASPHSIL
HOGENOM:HOG000033016 RefSeq:YP_507655.1 ProteinModelPortal:Q2GFX8
STRING:Q2GFX8 GeneID:3927418 KEGG:ech:ECH_0860 PATRIC:20577130
ProtClustDB:CLSK749571 BioCyc:ECHA205920:GJNR-863-MONOMER
Uniprot:Q2GFX8
Length = 639
Score = 337 (123.7 bits), Expect = 1.9e-40, Sum P(2) = 1.9e-40
Identities = 101/351 (28%), Positives = 174/351 (49%)
Query: 328 EKLERTSEFL-IYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFM 386
E L R SE +Y I A L ++ +++ +K T ++ TD ++ +
Sbjct: 67 EMLSRISELTPVYNIWLGTFHAIAAKILRQHAEVVGLKNDFT-IINTDDQLQVIKNIVND 125
Query: 387 MNAMLFFSMSSFKLCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSC 446
M+ ++ + K+ NK +R S T E K + + + Y L+
Sbjct: 126 MHPE--YASDAHKII-LNKIQRWKDRGLIPSNITETELYKPINTVALSTYHIYQERLKFL 182
Query: 447 NALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRIT 505
N +D+ DL+ ++++ +T V YQ+ +K I+VDE+QD + +QY L++LA + +
Sbjct: 183 NCVDFGDLLLYNIQIFTTQHNVLSHYQEQFKYIMVDEYQDINTIQYLWLRLLAQKYKNLC 242
Query: 506 IVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRC 565
VGDDDQSI+S+ GA++ F DF N K +RL NYRST I++ A+++I +N R
Sbjct: 243 CVGDDDQSIYSWRGAEVGNILKFSDDFPNAKIVRLECNYRSTSNILDVATAIINNNKSRL 302
Query: 566 QLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVS 625
K + T N G K+ + + + A+ +I E+ N + AIL R
Sbjct: 303 G-KKLWTTNEKGQKVNLMKFWDSKAEAQYIC----EYIKN--LHDYQFNETAILVRAGFQ 355
Query: 626 GKVFQTAFRERKIPFNI-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRV 675
++F+ F + IP+ I G FY ++ +R IIA L+ T+ +D + R+
Sbjct: 356 TRIFEEYFIKYSIPYKIIGGTRFYDRQEIRDIIAYLKITVNPNNDIAFERI 406
Score = 177 (67.4 bits), Expect = 1.9e-40, Sum P(2) = 1.9e-40
Identities = 49/126 (38%), Positives = 75/126 (59%)
Query: 823 NVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
N + F+++IS ET+ N+N + T+H +KGLE+ IVF+ E P H
Sbjct: 515 NDVNEFLEHISLVTETDSLNY----NDNYTYIMTLHAAKGLEFPIVFLPGWEEGVFP--H 568
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMM-DAN-W-QLLQPSRFLKEIP-H 937
E + G ++EEERRL YV +TRAR++LFI V + D N W Q ++ SRF+KE+P
Sbjct: 569 E-KSLQDRTGEALEEERRLAYVGITRAREQLFISCVAVRDINNWRQQMKISRFIKELPAE 627
Query: 938 HLREVQ 943
H++ ++
Sbjct: 628 HVQVIK 633
Score = 139 (54.0 bits), Expect = 8.3e-19, Sum P(2) = 8.3e-19
Identities = 42/130 (32%), Positives = 65/130 (50%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGKGIS---------------PSNILAMTFTT 288
Y+ SLN+ Q EA +++ P+LI+AG G+GK + PS ILA+TFT
Sbjct: 4 YITSLNEDQREAVI-NINGPILILAGAGTGKTRTITSRIAYIINNNFALPSQILAVTFTN 62
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA+EM RI + + + TFH+ + ++ R HAE + ++F I Q + I
Sbjct: 63 KAANEMLSRISELT---PVYNIWLGTFHAIAAKILRQHAEVVGLKNDFTIINTDDQLQVI 119
Query: 349 IEAVRLLENE 358
V + E
Sbjct: 120 KNIVNDMHPE 129
>TIGR_CMR|NSE_0356 [details] [associations]
symbol:NSE_0356 "helicase, UvrD/Rep family" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISS] [GO:0006268 "DNA unwinding
involved in replication" evidence=ISS] InterPro:IPR000212
InterPro:IPR014016 InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361
PROSITE:PS51198 PROSITE:PS51217 GO:GO:0005524 GO:GO:0003677
GO:GO:0004003 PANTHER:PTHR11070 EMBL:CP000237
GenomeReviews:CP000237_GR eggNOG:COG0210 HOGENOM:HOG000033015
KO:K03657 RefSeq:YP_506245.1 ProteinModelPortal:Q2GE51
STRING:Q2GE51 GeneID:3932197 KEGG:nse:NSE_0356 PATRIC:22680791
OMA:FLTITSA ProtClustDB:CLSK2527906
BioCyc:NSEN222891:GHFU-381-MONOMER Uniprot:Q2GE51
Length = 630
Score = 341 (125.1 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35
Identities = 82/244 (33%), Positives = 133/244 (54%)
Query: 434 AILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYS 493
++ + Y L+ N++D+ DL+ +V L + E ++Y++ ++ I+VDE+QDT+ QY
Sbjct: 180 SVYDTYQKKLKENNSMDFGDLLMHNVTLFNKDAETLEKYKEKFRYIMVDEYQDTNLCQYL 239
Query: 494 LLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVE 552
L++LA H+ I VGDDDQSI+ + GA++ F KDF K I+L +NYRST I+
Sbjct: 240 WLRLLAQKHSNICCVGDDDQSIYGWRGAEVGNILRFAKDFEGAKVIKLEQNYRSTNKILT 299
Query: 553 AASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICS 612
AA ++I++N R K + T G +I I + + + II I E +C
Sbjct: 300 AAHNIIKNNQSRLT-KKLWTAYPGGEEIQIFTYMDSEQEARAIIRMIKERKL-----LCR 353
Query: 613 YGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVAFYRKKVVRAIIAMLRTTLPGCDDGP 671
Y AIL R + F+ A +P+ + G+ FY +K +R IIA LR + D+
Sbjct: 354 YSDTAILVRAGFQTRAFEEAAIHENVPYRVVGGLKFYERKEIRDIIAYLRLVVNPNDNLA 413
Query: 672 YRRV 675
+ R+
Sbjct: 414 FERI 417
Score = 146 (56.5 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 67/233 (28%), Positives = 100/233 (42%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GIS-PSNILAMTFTTA 289
+ +LND+Q A ++ P+LI+AG G+GK G + P+ I+A+TF
Sbjct: 13 IMNLNDEQ-RLAVETVNGPVLILAGAGTGKTKTLVHRIAHLIRSGYAHPNQIMAVTFANK 71
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI- 348
AA+EM R+ IVG+ K I TFH+ + ++ R AEKL +F I Q R +
Sbjct: 72 AANEMIQRVNEIVGEM--KFHWIGTFHAAAAKILRIEAEKLGFKPDFTILDVDDQVRMLQ 129
Query: 349 -IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFF---SMSSFKLCQYN 404
+ + +E +K L+ K +S D F R F A +F ++S + Q
Sbjct: 130 KVAQEKKIEADKALLKKYLSVISAWKDKAFTPSRVR-FNNAANTWFEKQALSVYDTYQKK 188
Query: 405 KFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISC 457
E + MD F K A LE Y R +Y D C
Sbjct: 189 LKENNSMDFGDLLMHNVTLFNK-----DAETLEKYKEKFRYIMVDEYQDTNLC 236
Score = 126 (49.4 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35
Identities = 46/161 (28%), Positives = 76/161 (47%)
Query: 782 EDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVD-QDKKGCINVLKAFIDYISERETEHF 840
++ L L LL +T S +A KE+ ++ V++ F D +
Sbjct: 473 QEESLNHSLHDLLKKIT-LESGYISALKEQDETRIENVDELFRVIQEFDDATDFLQHVSL 531
Query: 841 RTQRH---DNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEE 897
T+ +N ++V + T+H SKGLE++ VF+ + P V E+ +EEE
Sbjct: 532 LTESDAQINNSDAVNMMTLHASKGLEFEQVFLPGWEDGTFPHVRSL--CSTEQ---IEEE 586
Query: 898 RRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
RRL YV +TRA++ L I ++ +WQ SRF+ E+
Sbjct: 587 RRLAYVGITRAKRFLTITSAHRRLIRNSWQNTVKSRFMLEL 627
Score = 44 (20.5 bits), Expect = 5.3e-27, Sum P(2) = 5.3e-27
Identities = 15/75 (20%), Positives = 33/75 (44%)
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+++++K L F+ + + + E HD +TL + + S E D + +
Sbjct: 451 LEENEKLKSTALLTFVKQVRKWQEESLNHSLHDLLKKITLESGYISALKEQDETRIENVD 510
Query: 874 ETEIPLVHEFNGAVN 888
E ++ EF+ A +
Sbjct: 511 EL-FRVIQEFDDATD 524
Score = 41 (19.5 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 769 RAVVDFDGGKLLNEDNDLRSVLQYLLA 795
R DF+G K++ + + RS + L A
Sbjct: 274 RFAKDFEGAKVIKLEQNYRSTNKILTA 300
>ASPGD|ASPL0000016352 [details] [associations]
symbol:AN3797 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0044732
"mitotic spindle pole body" evidence=IEA] [GO:0034644 "cellular
response to UV" evidence=IEA] [GO:0000725 "recombinational repair"
evidence=IEA] [GO:0006301 "postreplication repair" evidence=IEA]
InterPro:IPR000212 InterPro:IPR014016 InterPro:IPR014017
Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198 PROSITE:PS51217
GO:GO:0005524 GO:GO:0003677 EMBL:BN001302 GO:GO:0004003
PANTHER:PTHR11070 Gene3D:1.10.10.160 InterPro:IPR013986
ProteinModelPortal:C8V6U5 EnsemblFungi:CADANIAT00004916
HOGENOM:HOG000183390 OMA:CHTILLE Uniprot:C8V6U5
Length = 997
Score = 271 (100.5 bits), Expect = 3.0e-35, Sum P(3) = 3.0e-35
Identities = 65/229 (28%), Positives = 121/229 (52%)
Query: 435 ILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSL 494
+ Y L + N LDY DL+ +LL P+ Q ++VDEFQDT+ +QY L
Sbjct: 177 VYREYESELATSNLLDYDDLLLRCAELLRKHPKCVSNVQ----VVLVDEFQDTNQIQYDL 232
Query: 495 LQILASHNR-ITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEA 553
+ +LAS NR IT+VGD DQSI+ F A+I ++ + N + + L NYRS+ I+++
Sbjct: 233 MNLLASWNRRITVVGDPDQSIYGFRSAEIENLKRMQRLYRNTEVVLLEDNYRSSGSILKS 292
Query: 554 ASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSY 613
A +I+ ++ R K +Q ++ G+ ++++ + + + +++ +I + + Y
Sbjct: 293 AQDVIEQDLSR-PAKKLQPTHTFGTLPVLRKLPSAEDEAQWLVLEI-KRCIVLTGKLLKY 350
Query: 614 GSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFYRKKVVRAIIAMLR 661
AIL R + ++A + +P+ + G F+ + V+ ++ LR
Sbjct: 351 SDFAILLRSASLSRQIESAMGKHGVPYRMVGGQRFFDRVEVKLLLDYLR 399
Score = 144 (55.7 bits), Expect = 3.0e-35, Sum P(3) = 3.0e-35
Identities = 35/81 (43%), Positives = 48/81 (59%)
Query: 842 TQRHDN-ENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRL 900
T+ D + VT++TIH +KGLEW +VF+ A E IP H + +EERRL
Sbjct: 580 TEGEDQAQEKVTISTIHAAKGLEWPVVFIPAAYEGIIP--HS-------RAEDSDEERRL 630
Query: 901 LYVAMTRARKKLFILYVMMDA 921
LYVAMTRA+ L++ Y + A
Sbjct: 631 LYVAMTRAQALLYLSYPLRQA 651
Score = 110 (43.8 bits), Expect = 3.0e-35, Sum P(3) = 3.0e-35
Identities = 34/104 (32%), Positives = 47/104 (45%)
Query: 239 DEYSKYLQSLNDQQLEAACGDMSTPLL-IVAGPGSGK---------------GISPSNIL 282
D L LN Q A S P+L ++A PGSGK G P +++
Sbjct: 2 DPLDPILDGLNSAQRTAVTS--SAPILQVLAPPGSGKTKTLTSRVAYLLAHDGYRPQDVI 59
Query: 283 AMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSH 326
TFT A+ EMR+R+ +VG L + TFHS +CR +
Sbjct: 60 CCTFTIKASREMRERLAKLVGDHVQSRLILGTFHS----ICRRY 99
Score = 37 (18.1 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 240 EYSKYLQSLN-DQQLEAACGDMSTPLLIVAG 269
+++ L+S + +Q+E+A G P +V G
Sbjct: 352 DFAILLRSASLSRQIESAMGKHGVPYRMVGG 382
>TIGR_CMR|CJE_1244 [details] [associations]
symbol:CJE_1244 "ATP-dependent DNA helicase, UvrD/REP
family" species:195099 "Campylobacter jejuni RM1221" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] InterPro:IPR000212 InterPro:IPR014016
InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198
PROSITE:PS51217 GO:GO:0005524 GO:GO:0003677 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0004003 PANTHER:PTHR11070
eggNOG:COG0210 KO:K03657 HOGENOM:HOG000033016 RefSeq:YP_179232.1
ProteinModelPortal:Q5HU03 STRING:Q5HU03 GeneID:3231751
KEGG:cjr:CJE1244 PATRIC:20044284 OMA:DIIQYIS ProtClustDB:CLSK872561
BioCyc:CJEJ195099:GJC0-1270-MONOMER Uniprot:Q5HU03
Length = 691
Score = 332 (121.9 bits), Expect = 2.5e-34, Sum P(2) = 2.5e-34
Identities = 87/289 (30%), Positives = 150/289 (51%)
Query: 439 YNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL 498
Y L N +D+ DL+ S +L +E + I VDE+QDT+ +QY +L+ L
Sbjct: 179 YEEYLLKQNFVDFDDLLLLSNLILENDINFAKEQSLLYNYITVDEYQDTNTLQYKILKNL 238
Query: 499 AS-HNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSL 557
H IT+VGDDDQSI+S+ GA I +F+ DF N K +L +NYRS I++AA++L
Sbjct: 239 CCMHENITVVGDDDQSIYSWRGAKIENILNFQNDFKNVKLAKLEQNYRSVGTILQAANNL 298
Query: 558 IQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIA 617
I HN +R + T ++ G I I + NE + +I ++ + ++G + IA
Sbjct: 299 ISHNEQRLGKTLICTKDT-GENIKILKNENEKDEGLYIAQEVKKLLNSGVEA----KEIA 353
Query: 618 ILYRRQVSGKVFQTAFRERKIPFNI-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVF 676
IL+R + + AF +++I + + G+ FY + ++ +I+ LR L DD ++R+
Sbjct: 354 ILFRVNALSRAIEEAFMKKQISYKLLSGMRFYERLEIKDLISYLRLILNPSDDLSFKRII 413
Query: 677 KAFXXXXXXXXXRVIDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQ 725
+ + ++++ + R+ S A C+ G T K++Q
Sbjct: 414 NR---PKRSIGEKALKNLEEYAKKRQISLFDALCESDGGVGILTTKKAQ 459
Score = 137 (53.3 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 77/269 (28%), Positives = 119/269 (44%)
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSI-SAVI 753
D IS +R ++ + D+ +I KRS G K L LE +K +R+ S+ A+
Sbjct: 392 DLISYLRL--ILNPSDDLSFKRIINRPKRSI---GEKALKNLEEYAK--KRQISLFDALC 444
Query: 754 TS---VANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYL--LADVTDFLSTKFTAA 808
S V + +K + A + L ++ + V + L + D+ S +
Sbjct: 445 ESDGGVGILTTKK--AQNEANIFIQNIHTLKSYDNAKKVFDNIEELFKIKDYFSEQDDGD 502
Query: 809 KEEGNVDQDKKGCINVLK-----AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLE 863
+ N+D+ LK + D +SE Q + +E V L +IH SKGLE
Sbjct: 503 ERIRNLDEFYANLREKLKEDPEASLEDLLSEISL--LSDQDNLDEECVCLMSIHASKGLE 560
Query: 864 WDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMD 920
+D VF+ +E PL E N +EEERRL YVA+TRA+K L I
Sbjct: 561 FDYVFIIGFDEGFFPLNSEEN---------LEEERRLAYVAITRAKKFLTISVANSRFYH 611
Query: 921 ANWQLLQPSRFLKEIPHHLREVQAEQSVQ 949
+ + PSRFL+E + E Q++Q
Sbjct: 612 GSRANINPSRFLEE-SKLINEKSKNQNIQ 639
Score = 126 (49.4 bits), Expect = 2.5e-34, Sum P(2) = 2.5e-34
Identities = 41/138 (29%), Positives = 65/138 (47%)
Query: 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAA 290
+ LND Q +A + +LI+AG GSGK GI N L +TFT A
Sbjct: 5 EDLNDSQKQAV-SHIDGAMLILAGAGSGKTKTITTRLAYLIGEVGIPSHNTLTLTFTNKA 63
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIE 350
AS MR R + + + L + TFH F L + H E+LER + F++ ++ I +
Sbjct: 64 ASVMRHRALNFL-QGNHNPL-LCTFHKFGLLFLKLHFERLERKNSFIVIDTDDTKKIIKD 121
Query: 351 AVRLLENEKIL-VVKRIS 367
+ + + +++ IS
Sbjct: 122 LIHDKNKDNVYDIIQYIS 139
>TIGR_CMR|BA_1239 [details] [associations]
symbol:BA_1239 "ATP-dependent DNA helicase, UvrD/REP
family" species:198094 "Bacillus anthracis str. Ames" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006268
"DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000212 InterPro:IPR014016 InterPro:IPR014017
Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198 PROSITE:PS51217
GO:GO:0005524 EMBL:AE016879 EMBL:AE017334 GenomeReviews:AE016879_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0004003
PANTHER:PTHR11070 HSSP:P56255 Gene3D:1.10.10.160 InterPro:IPR013986
HOGENOM:HOG000033015 KO:K03657 RefSeq:NP_843711.1
RefSeq:YP_017853.2 ProteinModelPortal:Q81TN2 IntAct:Q81TN2
DNASU:1088073 EnsemblBacteria:EBBACT00000009323
EnsemblBacteria:EBBACT00000013542 GeneID:1088073 GeneID:2819701
KEGG:ban:BA_1239 KEGG:bar:GBAA_1239 PATRIC:18780078 OMA:LRLKDDY
ProtClustDB:CLSK916146 BioCyc:BANT261594:GJ7F-1276-MONOMER
Uniprot:Q81TN2
Length = 657
Score = 235 (87.8 bits), Expect = 5.4e-34, Sum P(3) = 5.4e-34
Identities = 78/264 (29%), Positives = 120/264 (45%)
Query: 404 NKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
NK R DV KA KTP E E + E + + + N +D+ D++ + +L
Sbjct: 158 NKLNRP-KDV-KA--KTPVE-----QEF-KEVYERFEEVKQRYNYIDFDDILLETYYMLE 207
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADI 522
+ + Q + I VDEFQDTS QY ++++LAS N + I GDDDQ+I+ + GA
Sbjct: 208 NNAPLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLASPRNNLFIAGDDDQAIYGWRGASH 267
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
SF K+F N I L NYRS IV + +I+ N +R K + + G +
Sbjct: 268 QIILSFPKEFDNTTIIALNTNYRSNPFIVGLGNEVIKLNQERFD-KELYSVREEGVQPFY 326
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI 642
+ I+ I E +G + Y +LYR + KIPF
Sbjct: 327 ARPATTLDEANQILQLIQEKVDSGERN---YKDFCLLYRTHSVSRSLLDQLTIHKIPFIK 383
Query: 643 HGVA--FYRKKVVRAIIAMLRTTL 664
HG + FY +++ ++ LR +
Sbjct: 384 HGASQSFYEHSLIKPVLDHLRLVI 407
Score = 151 (58.2 bits), Expect = 5.4e-34, Sum P(3) = 5.4e-34
Identities = 43/125 (34%), Positives = 71/125 (56%)
Query: 825 LKAFIDYISE-----RETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP- 878
+ A++ +I E +E E +T +++V+L +IH +KGLE+ VF+ A++ +P
Sbjct: 531 IPAYLQFIDEAIQGQKEMEALKTM--PQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPH 588
Query: 879 --LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQPSRFLKEIP 936
+ + N V E ++EEERRLLYVA+TRA+++L+I + L SRFL +
Sbjct: 589 TSSLKDANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRG-KKLDISRFLYTVR 647
Query: 937 HHLRE 941
L E
Sbjct: 648 KDLPE 652
Score = 120 (47.3 bits), Expect = 5.4e-34, Sum P(3) = 5.4e-34
Identities = 37/95 (38%), Positives = 51/95 (53%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK--------G-------ISPSNILAMTFTTAAAS 292
LN++QLEA P+L +AG GSGK G + P NIL +TFT AA
Sbjct: 20 LNEKQLEAV-RTTEGPVLTLAGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAE 78
Query: 293 EMRDRIGSIVGK--ATAKELTISTFHSFSLQLCRS 325
E+R+R+ ++ G A + + TFHS L+L RS
Sbjct: 79 EIRNRVANLPGMNHAASSYVVAGTFHSVFLKLLRS 113
Score = 42 (19.8 bits), Expect = 1.0e-22, Sum P(3) = 1.0e-22
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 926 LQPSRFLKEIPH----HLREVQA-EQSVQDQHENIPE 957
L+P + LKEI H +L +Q+ ++S H++I E
Sbjct: 479 LEPKKALKEIIHGKGKYLEYLQSNDRSSFTMHKDIQE 515
>TIGR_CMR|CJE_0868 [details] [associations]
symbol:CJE_0868 "ATP-dependent DNA helicase, putative"
species:195099 "Campylobacter jejuni RM1221" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] InterPro:IPR000212 InterPro:IPR014016
InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198
PROSITE:PS51217 GO:GO:0005524 GO:GO:0003677 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0004003 PANTHER:PTHR11070
eggNOG:COG0210 KO:K03657 RefSeq:YP_178870.1
ProteinModelPortal:Q5HV15 STRING:Q5HV15 GeneID:3231381
KEGG:cjr:CJE0868 PATRIC:20043503 HOGENOM:HOG000102849 OMA:PTLLNYN
ProtClustDB:CLSK872465 BioCyc:CJEJ195099:GJC0-888-MONOMER
Uniprot:Q5HV15
Length = 676
Score = 217 (81.4 bits), Expect = 7.9e-32, Sum P(3) = 7.9e-32
Identities = 74/243 (30%), Positives = 124/243 (51%)
Query: 423 EFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVD 482
E + I EI IL+ Y+ + N +D++DL+ + L E E+ + I+VD
Sbjct: 161 EDQSIYAEIYEDILKEYDNEKKRFNYVDFNDLL---INLKDLLKEEKYEFDE----ILVD 213
Query: 483 EFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLT 541
E+QDT+ +Q SL++ A H++ + VGD DQSI++FNGADI+ F+ F + K L
Sbjct: 214 EYQDTNTLQSSLIE--AFHSKSLFCVGDYDQSIYAFNGADINIIGGFKDRFKDAKIFSLN 271
Query: 542 RNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSH---GSKIIIKECHNEDAQCAFIIDK 598
+NYRS+R I+ A+ +I +N + + + T N S + +E ++ A +I
Sbjct: 272 KNYRSSRSILALANKVILNNERLYPKELIVTRNDEFKAPSLLTFEELFDQYQNIAKMI-- 329
Query: 599 ILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGV-AFYRKKVVRAII 657
++G S IA+++R S + A RE+ I G +F+ V+A
Sbjct: 330 ----LTSG----VSLEEIAVIFRNNSSADGVEVALREQGIASVRKGSGSFFESLEVKAFS 381
Query: 658 AML 660
+ML
Sbjct: 382 SML 384
Score = 157 (60.3 bits), Expect = 7.9e-32, Sum P(3) = 7.9e-32
Identities = 54/152 (35%), Positives = 76/152 (50%)
Query: 796 DVTDFLSTKFTAAKEEGNVDQDKKG--------CINVLKAFI-DYISERETEHFRTQRHD 846
++ + L+TK A + G VD +K NVLK +Y + +F T
Sbjct: 520 EICEELATK-RATNKAGQVDLLRKSENLEKIETKFNVLKELTKNYSDIYKYYNFLTLGAS 578
Query: 847 NENS---VTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYV 903
+S V L ++H SKGLE+D+VFV + P N + G S+EEERRL YV
Sbjct: 579 EMSSGKGVNLLSVHASKGLEFDLVFVIDLAQGRFP-----NQKLMGMGGSLEEERRLFYV 633
Query: 904 AMTRARKKLFILYVMMDANWQL-LQPSRFLKE 934
A+TRA+ L++ Y D N + PSRFL E
Sbjct: 634 AVTRAKNILYLSYAKYDKNKKTSFAPSRFLIE 665
Score = 113 (44.8 bits), Expect = 7.9e-32, Sum P(3) = 7.9e-32
Identities = 36/107 (33%), Positives = 52/107 (48%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIV-AGPGS------------GKGISPSNILAMTFTTAAA 291
L LN++Q AA D L+I AG G KG++P I+ +TFT A+
Sbjct: 3 LSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLSKGVAPQKIMLLTFTNKAS 62
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEK---LERTSE 335
EM R+G K ++ TFHS + L R+ A+K L++ SE
Sbjct: 63 KEMIGRLGKFFDKNITSKILAGTFHSTAYTLLRN-ADKNIALKQASE 108
>TIGR_CMR|GSU_3266 [details] [associations]
symbol:GSU_3266 "DNA helicase II, putative" species:243231
"Geobacter sulfurreducens PCA" [GO:0003678 "DNA helicase activity"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR000212 InterPro:IPR014016 InterPro:IPR014017
InterPro:IPR016195 Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198
PROSITE:PS51217 GO:GO:0005524 GO:GO:0003677 GO:GO:0008152
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0004003
PANTHER:PTHR11070 SUPFAM:SSF89550 RefSeq:NP_954307.1
ProteinModelPortal:Q747J9 GeneID:2686368 KEGG:gsu:GSU3266
PATRIC:22029373 HOGENOM:HOG000228390 OMA:TRKVHHL
ProtClustDB:CLSK743193 BioCyc:GSUL243231:GH27-3242-MONOMER
Uniprot:Q747J9
Length = 1078
Score = 232 (86.7 bits), Expect = 5.6e-31, Sum P(3) = 5.6e-31
Identities = 76/229 (33%), Positives = 109/229 (47%)
Query: 448 ALDYHDLISCSVKLLSTFPEVFQEYQDSWKA-IIVDEFQDTSAMQYSLLQILASHNRITI 506
A+D D++ V+ L E F+ + A + VDEFQD +A QY+L++IL I
Sbjct: 617 AMDLDDVVPALVRRLRG-DETFRRRVCAGVAHLFVDEFQDLNAPQYALVEILGEEATIFA 675
Query: 507 VGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQ 566
+GD DQ+I+ F G+D S F F D + + L+RNYRS +VEAAS++I HN R
Sbjct: 676 IGDPDQAIYGFRGSDPSFFFRFA-DLPATRRLDLSRNYRSAAPLVEAASAVIAHNRLRSG 734
Query: 567 LKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASIC-------------SY 613
+ T G+ I + A+ FI+ +I E G +S S+
Sbjct: 735 ISLTPTTAREGA-IELYRAPTPAAEAEFIVRRI-EELMGGISSFSIASGRGGDQDSRRSF 792
Query: 614 GSIAILYRRQVSGKVFQTAFRERKIPFNIHG-VAFYRKKVVRAIIAMLR 661
G IAILYR A R IPF + G V ++ V A +R
Sbjct: 793 GDIAILYRLARQADELANALDRRGIPFQLVGAVPYFLGPVAGAATRFVR 841
Score = 136 (52.9 bits), Expect = 5.6e-31, Sum P(3) = 5.6e-31
Identities = 44/116 (37%), Positives = 59/116 (50%)
Query: 827 AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGA 886
AF ++ E E +R + +V L T+H SKGLE+ +VF+A E IP
Sbjct: 952 AFDRHLREYAAETVYDERAE---AVALMTLHASKGLEFPVVFLAGCEEGLIP-------C 1001
Query: 887 VNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW--QLLQP-SRFLKEIPHHL 939
+ VEEERRL YV MTRA++ L +L + W +P SRF EIP L
Sbjct: 1002 TLWRDVDVEEERRLFYVGMTRAKETL-VLSASSERPWVSPAERPLSRFAGEIPGRL 1056
Score = 119 (46.9 bits), Expect = 5.6e-31, Sum P(3) = 5.6e-31
Identities = 32/88 (36%), Positives = 48/88 (54%)
Query: 252 QLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAASEMRD 296
Q EA D S +L+ AGPG+GK G P+ + A+TFT AA+E+R+
Sbjct: 467 QAEALACDASR-VLVAAGPGTGKTYTLVARLAALLAAPGTDPARVCAITFTNRAAAEVRE 525
Query: 297 RIGSIVGKATAKELTISTFHSFSLQLCR 324
R+ ++ G+A A ++ + TFH F L R
Sbjct: 526 RLAAVAGEA-AGQVFVGTFHRFCLDWLR 552
Score = 59 (25.8 bits), Expect = 8.4e-13, Sum P(3) = 8.4e-13
Identities = 26/83 (31%), Positives = 32/83 (38%)
Query: 612 SYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGVAFY--------RKKVVRAIIAM---- 659
S+G IAILYR A R IPF + G Y + VRA
Sbjct: 791 SFGDIAILYRLARQADELANALDRRGIPFQLVGAVPYFLGPVAGAATRFVRAAAGSTELA 850
Query: 660 ----LRTTLPGCDDGPYRRVFKA 678
L LPG +G RR+ +A
Sbjct: 851 DWLALAQDLPGVGEGTIRRLEEA 873
>UNIPROTKB|P64320 [details] [associations]
symbol:uvrD2 "ATP-dependent DNA helicase UvrD2"
species:1773 "Mycobacterium tuberculosis" [GO:0000287 "magnesium
ion binding" evidence=IDA] [GO:0003678 "DNA helicase activity"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] InterPro:IPR000212
InterPro:IPR002121 InterPro:IPR010997 InterPro:IPR014016
InterPro:IPR014017 Pfam:PF00570 Pfam:PF00580 Pfam:PF13361
PROSITE:PS50967 PROSITE:PS51198 PROSITE:PS51217 SMART:SM00341
GO:GO:0005524 GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0000287 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 EMBL:BX842582 GO:GO:0004003 PANTHER:PTHR11070
GO:GO:0003678 Gene3D:1.10.150.80 SUPFAM:SSF47819 GO:GO:0008094
eggNOG:COG0210 KO:K03657 PIR:D70951 RefSeq:NP_217714.1
RefSeq:NP_337820.1 RefSeq:YP_006516667.1 ProteinModelPortal:P64320
SMR:P64320 PRIDE:P64320 EnsemblBacteria:EBMYCT00000001051
EnsemblBacteria:EBMYCT00000070082 GeneID:13318013 GeneID:888902
GeneID:923289 KEGG:mtc:MT3291 KEGG:mtu:Rv3198c KEGG:mtv:RVBD_3198c
PATRIC:18128996 TubercuList:Rv3198c HOGENOM:HOG000033018
OMA:HLTLSWA ProtClustDB:CLSK872151 Uniprot:P64320
Length = 700
Score = 225 (84.3 bits), Expect = 8.6e-29, Sum P(3) = 8.6e-29
Identities = 66/241 (27%), Positives = 118/241 (48%)
Query: 433 AAILENYNGILR---SCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSA 489
AA+ Y + LD+ DL+ + + V +E+QD ++ +VDE+QD +
Sbjct: 183 AAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTP 242
Query: 490 MQYSLLQI-LASHNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTR 548
+Q +L L + +T+VGD +Q+I+SF GA F + F + +RL R+YRST
Sbjct: 243 LQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTP 302
Query: 549 CIVEAASSLI---QHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASN 605
+V A+ +I + V +L+ + G E +E A+ A + I ++
Sbjct: 303 QVVSLANRVIAAARGRVAGSKLR-LSGQREPGPVPSFHEHSDEPAEAATVAASIARLIAS 361
Query: 606 G-PASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGVA--FYRKKVVRAIIAMLRT 662
G P S +AILYR +V++ A + I + + G F R+++ +A++A+ R
Sbjct: 362 GTPPS-----EVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRV 416
Query: 663 T 663
+
Sbjct: 417 S 417
Score = 156 (60.0 bits), Expect = 8.6e-29, Sum P(3) = 8.6e-29
Identities = 38/92 (41%), Positives = 52/92 (56%)
Query: 851 VTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARK 910
VTL ++H +KGLEWD VF+ + +P+ H N + VEEERRLLYV +TRAR
Sbjct: 496 VTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSE--PVEEERRLLYVGITRARV 553
Query: 911 KLFILYVMMDA--NWQLLQPSRFLKEIPHHLR 940
L + + + + Q +PSRFL I R
Sbjct: 554 HLALSWALSRSPGGRQSRKPSRFLNGIAPQTR 585
Score = 77 (32.2 bits), Expect = 8.6e-29, Sum P(3) = 8.6e-29
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------G-ISPSNILAMTFTTA 289
+ L+DQQ EA P+ ++AG G+GK G ++ +LA+TFT
Sbjct: 9 IAGLDDQQREAVLAPRG-PVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQR 67
Query: 290 AASEMRDRIGSI 301
AA EMR R+ ++
Sbjct: 68 AAGEMRSRLRAL 79
>POMBASE|SPAC4H3.05 [details] [associations]
symbol:srs2 "ATP-dependent DNA helicase, UvrD subfamily"
species:4896 "Schizosaccharomyces pombe" [GO:0000725
"recombinational repair" evidence=IGI;IMP] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISM] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005819 "spindle"
evidence=IDA] [GO:0006301 "postreplication repair" evidence=IGI]
[GO:0031297 "replication fork processing" evidence=TAS] [GO:0034644
"cellular response to UV" evidence=IMP] [GO:0044732 "mitotic
spindle pole body" evidence=IDA] InterPro:IPR000212
InterPro:IPR014016 InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361
PROSITE:PS51198 PROSITE:PS51217 PomBase:SPAC4H3.05 GO:GO:0005524
GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0044732
GO:GO:0003677 GO:GO:0004003 PANTHER:PTHR11070 GO:GO:0034644
GO:GO:0031297 GO:GO:0006301 GO:GO:0000725 eggNOG:COG0210 PIR:T38885
RefSeq:NP_594341.1 ProteinModelPortal:Q10213 MINT:MINT-2730223
STRING:Q10213 EnsemblFungi:SPAC4H3.05.1 GeneID:2543577
KEGG:spo:SPAC4H3.05 KO:K03657 OMA:ASPHSIL OrthoDB:EOG470XRJ
NextBio:20804584 Uniprot:Q10213
Length = 887
Score = 276 (102.2 bits), Expect = 3.4e-27, Sum P(2) = 3.4e-27
Identities = 120/435 (27%), Positives = 193/435 (44%)
Query: 242 SKYLQSLNDQQ-LEAACGDMSTPLLIVAGPGSGKG-ISPSNILAMTFTTAAASEMRDRIG 299
S YL+ LN++Q + T +L AGPGSGK + + + + A+E D I
Sbjct: 5 SSYLKFLNEEQRISVQSPHKYTQIL--AGPGSGKTRVLTARVAYLLQKNHIAAE--DLII 60
Query: 300 SIVGKATAKELTISTFHSFSLQLCRSHAEKLERTS------EFLI-YG-H-GQQRRAIIE 350
+ A E+ + L S A KL + ++L+ YG H G +I
Sbjct: 61 ATFTNKAANEIKLR----IEAILGNSEASKLISGTFHSIAYKYLVKYGKHIGLSSNWLI- 115
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHF--GYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
A R N+ ++KR+ + G L NA+ + KL +
Sbjct: 116 ADR---NDTQAIMKRLLDSLKKAKNPIASGIRGQELTPQNALNRIT----KLKSNGLLVK 168
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
GMD +++ + Y L N D+ DL+ + LL P+
Sbjct: 169 PGMDQLSLINGLEEPPKELQSHQSVELYRLYQTSLWKNNLADFDDLLLNFILLLQKQPDC 228
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDS 527
+ K I++DEFQDTS +QY L+++LA N ITIVGD DQSI+ F A+I +
Sbjct: 229 VRNI----KHILIDEFQDTSKIQYFLVKLLALQNSDITIVGDPDQSIYGFRSAEIRNLNQ 284
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
+DF + + L RNYRS + I+E A S+I + R + K +++++ K +
Sbjct: 285 MSEDFEGTQVLHLERNYRSAKPILELALSIISQDKSRPK-KGLKSNHISSLKPHYRLFET 343
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGV-A 646
+ + +I +I + P I Y IAIL R + + A E +P+ + GV
Sbjct: 344 NNKESYWIAREIKRIVGSCPELIF-YNDIAILVRSSSLTRSLEHALSELGVPYRMVGVNK 402
Query: 647 FYRKKVVRAIIAMLR 661
F+ ++ +R +IA LR
Sbjct: 403 FFDREEIRDLIAYLR 417
Score = 121 (47.7 bits), Expect = 3.4e-27, Sum P(2) = 3.4e-27
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 843 QRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLY 902
Q+ VT++T+H +KGLEW +VF+ E IP H + ++EERRLLY
Sbjct: 579 QKEGESQKVTISTLHAAKGLEWPVVFLPCLCENIIP--HS-------RSDDLDEERRLLY 629
Query: 903 VAMTRARKKLFI 914
V TRA+ L++
Sbjct: 630 VGATRAQALLYL 641
Score = 37 (18.1 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 1044 VIDERLRVKKNKHKDVLRALKSCLSS 1069
V +E + + + K L++LKS L S
Sbjct: 464 VKNENILLSQRNDKSFLKSLKSFLCS 489
>CGD|CAL0003422 [details] [associations]
symbol:orf19.5970 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005816 "spindle pole body"
evidence=IEA] [GO:0034644 "cellular response to UV" evidence=IEA]
[GO:0000725 "recombinational repair" evidence=IEA] [GO:0032508 "DNA
duplex unwinding" evidence=IEA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] InterPro:IPR000212 InterPro:IPR014016
InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198
PROSITE:PS51217 CGD:CAL0003422 GO:GO:0005524 GO:GO:0003677
GO:GO:0004003 PANTHER:PTHR11070 EMBL:AACQ01000003 EMBL:AACQ01000004
eggNOG:COG0210 KO:K03657 RefSeq:XP_723034.1 RefSeq:XP_723181.1
STRING:Q5AND3 GeneID:3635169 GeneID:3635413 KEGG:cal:CaO19.13391
KEGG:cal:CaO19.5970 Uniprot:Q5AND3
Length = 862
Score = 281 (104.0 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 118/479 (24%), Positives = 217/479 (45%)
Query: 502 NRITIVGDDDQSIFSFNGADISGFDS----FRKDFLNYKEIRLTRNYRSTRCIVEAASSL 557
N +TIVGD DQ I++F A F+ + K L+ +I L NYRST I+ + SL
Sbjct: 276 NNVTIVGDPDQGIYAFRDAQSINFEKMSTYYTKLNLSLDKISLNENYRSTSSILNISESL 335
Query: 558 IQHNVKRC--QLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGS 615
+ R LK+ Q D+S K + ++ + +I+ +I H + P S
Sbjct: 336 MNQQKGRMPKMLKS-QLDSS--IKPVYSCLNSAKEEAKWIVYQI-SHLLSLPNSAVQEKD 391
Query: 616 IAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRR 674
IA+L+R + + +R + + I G AF+ ++ V AI+ ++ D+
Sbjct: 392 IAVLFRAAYQSRALEDELVKRGLSYKMIRGKAFWDRQEVIAIMDYMKVC---SDEYEQAA 448
Query: 675 VFKAFXXXXXXXXXRVIDHIDKI--------STIRKCSFISAACDIFGAKISGTFKRSQL 726
V + + +++I+KI ++ +C ++ +I T K+ Q
Sbjct: 449 VIRTLNYPKRGIGSKTLENIEKIIEKRVKQGKSVHQC-LLAMTKKSEEPEIKLTKKQIQG 507
Query: 727 TQGRKVLLTLEMISKLVRREPSISAVITSVA----NMVPQKYLLEQRAVVDFDGGKLLNE 782
+ ++T ++ KL E +T+ A +++ + L+Q D + K LN
Sbjct: 508 VEEYYTMIT-KVKKKLYEMEALSGEDMTNTAKELFDLIYESSKLKQEFENDEERSKRLNV 566
Query: 783 DNDLRSVLQYLLAD--VTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHF 840
+ ++Q+ D + D++ +++ VD+ + N L FI+ + ET
Sbjct: 567 EEVGNLLVQFKPKDEILPDYIGGDI---EDDDAVDEGDR---NFLAQFIESVGLYETND- 619
Query: 841 RTQRHDNENS-----------VTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
+++ +E++ ++L+TIH SKGLEW +VFV + +P F + +
Sbjct: 620 EVEKNGSESTGDDTAKEEKSCISLSTIHGSKGLEWPVVFVQGLTDGLLPAGFSFRNSFGD 679
Query: 890 KGTSVEEERRLLYVAMTRARKKLFIL-YVMMDANW----QLLQPSRFLKEIPHHLREVQ 943
++ EERR YVA+TRA+ L+I Y+ +N L Q SRF++ + +L Q
Sbjct: 680 NDENLNEERRCFYVAVTRAKVLLYISSYIESQSNVFYGEALNQESRFMEPLKKNLARTQ 738
Score = 257 (95.5 bits), Expect = 5.2e-18, P = 5.2e-18
Identities = 165/700 (23%), Positives = 287/700 (41%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFT 287
K L+SLN Q +A + L I+AGPG+GK I P N++ TFT
Sbjct: 11 KILESLNANQRKAVTAPCNGRLQIIAGPGTGKTKVLISRVAYLLISENIRPDNMIVTTFT 70
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA+EM +R+ +V + T + +F +C +K + + Y +R
Sbjct: 71 KRAANEMIERLTKLV-EGTDINIDKLIIGTFH-SICFRIIKKYGKLIDLENYTIADERDK 128
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAM---LFFSMSSFKLCQYN 404
+L N L K I + L + G + N L S+ S K+
Sbjct: 129 SYILKTMLTN---LSAKDI--ERLDSFGEESLQKLRSHKANEKYHGLDLSVISKKISSL- 182
Query: 405 KFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHD-LISCSVKLLS 463
K DV SGK+ K + A E Y +L LD+ D L+ C +L+
Sbjct: 183 KSNCISHDVY--SGKS-----KRNPAL-AFFYEKYQALLTDLKKLDFDDCLLECH-RLVE 233
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS---------HNRITIVGDDDQSI 514
FP + Y K ++VDEFQDT+ +Q L+ A N +TIVGD DQ I
Sbjct: 234 NFPVL--NYI---KHVLVDEFQDTNEIQLRLMYHFAKGNTNGDPKYQNNVTIVGDPDQGI 288
Query: 515 FSFNGADISGFDS----FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRC-QLKN 569
++F A F+ + K L+ +I L NYRST I+ + SL+ R ++
Sbjct: 289 YAFRDAQSINFEKMSTYYTKLNLSLDKISLNENYRSTSSILNISESLMNQQKGRMPKMLK 348
Query: 570 VQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVF 629
Q D+S K + ++ + +I+ +I H + P S IA+L+R +
Sbjct: 349 SQLDSS--IKPVYSCLNSAKEEAKWIVYQI-SHLLSLPNSAVQEKDIAVLFRAAYQSRAL 405
Query: 630 QTAFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRR--VFKAFXXXXXXX 686
+ +R + + I G AF+ ++ V AI+ ++ C D Y + V +
Sbjct: 406 EDELVKRGLSYKMIRGKAFWDRQEVIAIMDYMKV----CSD-EYEQAAVIRTLNYPKRGI 460
Query: 687 XXRVIDHIDKI--------STIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEM 738
+ +++I+KI ++ +C ++ +I T K+ Q + ++T ++
Sbjct: 461 GSKTLENIEKIIEKRVKQGKSVHQC-LLAMTKKSEEPEIKLTKKQIQGVEEYYTMIT-KV 518
Query: 739 ISKLVRREPSISAVITSVA----NMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLL 794
KL E +T+ A +++ + L+Q D + K LN + ++Q+
Sbjct: 519 KKKLYEMEALSGEDMTNTAKELFDLIYESSKLKQEFENDEERSKRLNVEEVGNLLVQFKP 578
Query: 795 ADVTDFLSTKFTAAKEEGN-VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTL 853
D + L E+ + VD+ + N L FI+ + ET +++ +E++
Sbjct: 579 KD--EILPDYIGGDIEDDDAVDEGDR---NFLAQFIESVGLYETND-EVEKNGSESTGDD 632
Query: 854 TTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTS 893
T + + + +K E + V + G S
Sbjct: 633 TAKEEKSCISLSTIHGSKGLEWPVVFVQGLTDGLLPAGFS 672
Score = 41 (19.5 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 21/99 (21%), Positives = 39/99 (39%)
Query: 151 DFDDSILQEIDAICEKSAAKDVRKAQNSGIYEETHQNDNSCTHLNASLESVTTNENIRMD 210
DFDD +L E + E + K +++T++ L TN + +
Sbjct: 220 DFDDCLL-ECHRLVENFPVLNYIKHVLVDEFQDTNEIQ---LRLMYHFAKGNTNGDPKYQ 275
Query: 211 ISMDLAGDMKSSMEKTDTIQTIKTQNMPDEYSKYLQSLN 249
++ + GD + Q+I + M Y+K SL+
Sbjct: 276 NNVTIVGDPDQGIYAFRDAQSINFEKMSTYYTKLNLSLD 314
>UNIPROTKB|P15038 [details] [associations]
symbol:helD "DNA helicase IV" species:83333 "Escherichia
coli K-12" [GO:0016020 "membrane" evidence=IEA] [GO:0000155
"phosphorelay sensor kinase activity" evidence=IEA] [GO:0023014
"signal transduction by phosphorylation" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA] [GO:0033202
"DNA helicase complex" evidence=IDA] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IMP] InterPro:IPR000212 InterPro:IPR003661
InterPro:IPR014016 InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361
PROSITE:PS51198 SMART:SM00388 GO:GO:0005524 GO:GO:0016020
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006310 GO:GO:0023014
PANTHER:PTHR11070 GO:GO:0000155 GO:GO:0000160 GO:GO:0043140
eggNOG:COG0210 EMBL:J04726 PIR:A64837 RefSeq:NP_415482.1
RefSeq:YP_489234.1 ProteinModelPortal:P15038 SMR:P15038
DIP:DIP-9876N IntAct:P15038 MINT:MINT-1226516 PRIDE:P15038
EnsemblBacteria:EBESCT00000002172 EnsemblBacteria:EBESCT00000018217
GeneID:12934368 GeneID:946227 KEGG:ecj:Y75_p0934 KEGG:eco:b0962
PATRIC:32117143 EchoBASE:EB0421 EcoGene:EG10426
HOGENOM:HOG000118816 KO:K03658 OMA:VSPWKHI ProtClustDB:PRK11054
BioCyc:EcoCyc:EG10426-MONOMER BioCyc:ECOL316407:JW0945-MONOMER
BindingDB:P15038 ChEMBL:CHEMBL4405 Genevestigator:P15038
GO:GO:0033202 InterPro:IPR022161 Pfam:PF12462 Uniprot:P15038
Length = 684
Score = 235 (87.8 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 124/477 (25%), Positives = 212/477 (44%)
Query: 158 QEIDAICEKSAA-KDVRKAQNSGIYEETHQNDNSCTHLNASLESVTTNENIRMDISMDLA 216
Q++D I ++ K + + Q SG+ ++ Q + + L + + +N R A
Sbjct: 105 QQLDLIATRTGENKWLTREQTSGVQQQIRQ---ALSALPLPVNRLEEFDNCREAWRKCQA 161
Query: 217 G--DMKSSMEKTDTIQTIKTQNMPDEYSKYLQS-----LNDQQLEAAC-GDMSTPLLIVA 268
D++S+ + + T + M EY+ + + LN Q A G+ S LL++A
Sbjct: 162 WLKDIESARLQHNQAYT---EAMLTEYADFFRQVESSPLNPAQARAVVNGEHS--LLVLA 216
Query: 269 GPGSGK--------G-------ISPSNILAMTFTTAAASEMRDRIGSIVGKATAKELTIS 313
G GSGK G SP IL + F AA EM +RI + +++T
Sbjct: 217 GAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE---RLHTEDITAR 273
Query: 314 TFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTT 373
TFH+ +L + + ++K+ S+ L + I R +EK K LT
Sbjct: 274 TFHALALHIIQQGSKKVPIVSK-LENDTAARHELFIAEWRKQCSEKKAQAKGWR-QWLTE 331
Query: 374 DGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER-DGMDVAKASGKTPAEFRKIGDE-- 430
+ + + F + L ++S +L ++ R G A+ P E R + +
Sbjct: 332 EMQWSVPEGN-FWDDEKLQRRLAS-RLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKRI 389
Query: 431 -IGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSA 489
+ A +L+ + G L++ NA+D+ LI ++ +L + WK I+VDEFQD S
Sbjct: 390 KLMAPLLKAWKGALKAENAVDFSGLIHQAIVILEK-----GRFISPWKHILVDEFQDISP 444
Query: 490 MQYSLLQILASHNRITI---VGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRS 546
+ +LL L N T VGDD Q+I+ F+GA +S +F ++F + L YR
Sbjct: 445 QRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENFGEGERCDLDTTYRF 504
Query: 547 TRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHA 603
I E A+ IQ N QLK ++G K + +++Q ++DK+ +A
Sbjct: 505 NSRIGEVANRFIQQNPG--QLKKPLNSLTNGDKKAVTLL--DESQLDALLDKLSGYA 557
Score = 85 (35.0 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 25/73 (34%), Positives = 37/73 (50%)
Query: 851 VTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGT--SVE-----EERRLLYV 903
+ TIH SKG + D V + E ++ E+ VE EERRL+YV
Sbjct: 589 IDFMTIHASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPDAEERRLMYV 648
Query: 904 AMTRARKKLFILY 916
A+TRAR +++ L+
Sbjct: 649 ALTRARHRVWALF 661
>SGD|S000003628 [details] [associations]
symbol:SRS2 "DNA helicase and DNA-dependent ATPase involved
in DNA repair and chec" species:4932 "Saccharomyces cerevisiae"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=ISS;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0032508 "DNA
duplex unwinding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA;IGI] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IDA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] InterPro:IPR000212
InterPro:IPR014016 InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361
PROSITE:PS51198 PROSITE:PS51217 SGD:S000003628 GO:GO:0005524
GO:GO:0005634 EMBL:BK006943 GO:GO:0003677 GO:GO:0004003
PANTHER:PTHR11070 GO:GO:0003678 GO:GO:0006303 Gene3D:1.10.10.160
InterPro:IPR013986 eggNOG:COG0210 GeneTree:ENSGT00530000066700
EMBL:X77087 PDB:3V62 PDBsum:3V62 KO:K03657 OrthoDB:EOG470XRJ
EMBL:X15665 EMBL:Z49367 PIR:S46586 RefSeq:NP_012443.1
ProteinModelPortal:P12954 SMR:P12954 DIP:DIP-415N IntAct:P12954
MINT:MINT-385280 STRING:P12954 PaxDb:P12954 PeptideAtlas:P12954
EnsemblFungi:YJL092W GeneID:853353 KEGG:sce:YJL092W CYGD:YJL092w
HOGENOM:HOG000141756 OMA:EERRMFF NextBio:973762
Genevestigator:P12954 GermOnline:YJL092W Uniprot:P12954
Length = 1174
Score = 206 (77.6 bits), Expect = 2.9e-19, Sum P(3) = 2.9e-19
Identities = 108/439 (24%), Positives = 187/439 (42%)
Query: 239 DEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG-ISPSNILAMTFTTAAASEMRDR 297
D + + LN QQ AA D + L ++AGPG+GK + S + + RD
Sbjct: 6 DLWLHLVSQLNTQQRAAALFDYTRGLQVIAGPGTGKTKVLTSRVAYLILHHHI--HPRDI 63
Query: 298 I-GSIVGKAT--AKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVRL 354
I + KA KE + + ++Y G + + R+
Sbjct: 64 IVTTFTNKAANEMKERLQEMLRGAGVNISELLIGTFHSICLKILYRFGHLVD-LQKDWRI 122
Query: 355 LENEKILVVKRISTDML--TTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
++ ++I V I DM+ D Y + +N + S + + + K + +
Sbjct: 123 IDEKEIDV---ILDDMIEKVPDQIRDYASSITRKVN-LCMPSKNGDEWTIHPKLIKKQIS 178
Query: 413 VAKASGKTPAEFRKIGDEIGAA--ILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
K++ P E+ + A + Y L N LD+ DL+ + +LL T V
Sbjct: 179 KLKSNAILPEEYILDSNHDAALGYFYQIYQSELSKKNTLDFDDLLMYTFRLL-TRVRVLS 237
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-----ITIVGDDDQSIFSFNGADISGF 525
K ++VDEFQDT+ +Q L+ + A N +TIVGD DQSI++F A F
Sbjct: 238 NI----KHVLVDEFQDTNGIQLDLMFLFAKGNHHLSRGMTIVGDPDQSIYAFRNALAHNF 293
Query: 526 -DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLI-QHNVKRCQLKNVQTDNSHGSKIIIK 583
+ RK + Y I L NYRS++ I+ + LI Q N R ++ +
Sbjct: 294 LEMGRKCPIEYSTIILVENYRSSQKILNTSEILITQQNKGRQNRAPLRAQFDLDFPPVYM 353
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI- 642
+ ++ ++L + P ++ ++ AIL R++ K ++A E +IP+ I
Sbjct: 354 NFPAYFLEAPSLVRELL-YLKALP-NLFTFNDFAILVRQRRQIKRIESALIEHRIPYKII 411
Query: 643 HGVAFYRKKVVRAIIAMLR 661
G +F+ K RA++ +L+
Sbjct: 412 RGHSFWDSKETRAMLNLLK 430
Score = 107 (42.7 bits), Expect = 2.9e-19, Sum P(3) = 2.9e-19
Identities = 28/77 (36%), Positives = 39/77 (50%)
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENS--VTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
N L D E E+E + + E + VT++TIH +KGLEW +VF+ E IP V
Sbjct: 614 NSLSLHSDAAEEEESESNKDAKIKREKNGFVTISTIHGAKGLEWPVVFIPGCEEGIIPCV 673
Query: 881 HEFNGAVNEKGTSVEEE 897
FN ++ EEE
Sbjct: 674 --FNDDKKDESEEDEEE 688
Score = 63 (27.2 bits), Expect = 2.9e-19, Sum P(3) = 2.9e-19
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 893 SVEEERRLLYVAMTRARKKLFI 914
S++EERR+ +VA TRA+ L++
Sbjct: 710 SIDEERRMFFVAQTRAKYLLYL 731
>TIGR_CMR|VC_A0717 [details] [associations]
symbol:VC_A0717 "helicase IV" species:686 "Vibrio cholerae
O1 biovar El Tor" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0006268 "DNA unwinding involved in replication"
evidence=ISS] InterPro:IPR000212 InterPro:IPR014016
InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198
GO:GO:0005524 GO:GO:0003677 EMBL:AE003853 GenomeReviews:AE003853_GR
HSSP:P09980 GO:GO:0004003 PANTHER:PTHR11070 KO:K03658 OMA:VSPWKHI
ProtClustDB:PRK11054 InterPro:IPR022161 Pfam:PF12462 PIR:A82425
RefSeq:NP_233104.2 ProteinModelPortal:Q9KLM6 DNASU:2612005
GeneID:2612005 KEGG:vch:VCA0717 PATRIC:20085980 Uniprot:Q9KLM6
Length = 699
Score = 138 (53.6 bits), Expect = 5.2e-14, Sum P(3) = 5.2e-14
Identities = 38/124 (30%), Positives = 61/124 (49%)
Query: 442 ILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH 501
+L+ N +D++ +I+ + + + +++ WK I+VDE+QD S + LLQ L
Sbjct: 419 MLKDQNQIDFNIMITRATEYVEK-----GKFRSPWKFIMVDEYQDISPQRLRLLQALCEQ 473
Query: 502 NR----ITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSL 557
N+ + VGDD QSI+ F G+D+ F F + L YR I A+
Sbjct: 474 NQGQCNLFAVGDDWQSIYQFAGSDVDLTTGFASRFAHSTVHHLDTTYRFNDQIGAVANRF 533
Query: 558 IQHN 561
IQ N
Sbjct: 534 IQQN 537
Score = 105 (42.0 bits), Expect = 5.2e-14, Sum P(3) = 5.2e-14
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 855 TIHQSKGLEWDIVFVAKANETEIPL----VHEFNGAVN--EKGTSVEEERRLLYVAMTRA 908
T H SKG E D V + +E + P +H + A+N E EERRL YVA+TRA
Sbjct: 611 TCHASKGKEADYVIILAVDEGQFPARVKALH-LDDALNQSEDDFPYAEERRLFYVALTRA 669
Query: 909 RKKLFILY 916
++K+++ Y
Sbjct: 670 KEKVWVTY 677
Score = 76 (31.8 bits), Expect = 5.2e-14, Sum P(3) = 5.2e-14
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 278 PSNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQL 322
P IL + F AA EM +R+ + +G A+ L I+TFH L++
Sbjct: 256 PEQILLVAFARDAAQEMAERLKNKIG-LEAERLHINTFHQLGLRI 299
>UNIPROTKB|Q87W28 [details] [associations]
symbol:PSPTO_4751 "UvrD/REP helicase family protein"
species:223283 "Pseudomonas syringae pv. tomato str. DC3000"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000212
InterPro:IPR014016 InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361
PROSITE:PS51198 PROSITE:PS51217 GO:GO:0005524 GO:GO:0003677
GO:GO:0004003 PANTHER:PTHR11070 HSSP:P56255 EMBL:AE016853
GenomeReviews:AE016853_GR eggNOG:COG0210 RefSeq:NP_794486.1
ProteinModelPortal:Q87W28 GeneID:1186434 KEGG:pst:PSPTO_4751
PATRIC:20001014 HOGENOM:HOG000125736 ProtClustDB:CLSK409731
BioCyc:PSYR223283:GJIX-4816-MONOMER Uniprot:Q87W28
Length = 907
Score = 128 (50.1 bits), Expect = 9.5e-14, Sum P(3) = 9.5e-14
Identities = 60/238 (25%), Positives = 99/238 (41%)
Query: 433 AAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQY 492
A + E Y +R+ + +DY DLI+ +Y D + ++VDE+QD + +
Sbjct: 177 ATLFEAYETAMRAEHLVDYVDLIALPASQAKRDRTSVAQYIDHFSHVLVDEYQDVTEVMV 236
Query: 493 SLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDSFRKDFLN------YKEIRLTRNYR 545
LL+ LA + + VGD Q+I + GA I F FL+ + L N R
Sbjct: 237 DLLRQLALNAQSFWAVGDVRQAIHHWRGASIRSLMHFDATFLSTIPGATVRRYALDLNRR 296
Query: 546 STRCIVEAASSL-IQHNVK-RCQLKNVQTDN-SHGSKIIIKECHNEDAQCAFIIDKILEH 602
ST I+E S I H + R L+ V S G + EC ++ +Q I +I
Sbjct: 297 STPEILELFSCAGIHHALNDRMPLEPVTAYRPSIGVIPTLYECDSKLSQAVTIAQRIDGL 356
Query: 603 ASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRKKVVRAIIAM 659
G Y ++ R+ + + A +P +H G R ++ + + M
Sbjct: 357 VQRG----VPYRDQVVISRKSANVEQIVEALENLNVPV-LHIGDVCQRPEIKKLLCLM 409
Score = 111 (44.1 bits), Expect = 9.5e-14, Sum P(3) = 9.5e-14
Identities = 33/89 (37%), Positives = 47/89 (52%)
Query: 252 QLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASEMRDR 297
Q +AA T + +VAGPG+GK GI PS IL +TFT AA E+ +R
Sbjct: 5 QHDAATAS-ETFVNVVAGPGTGKTTTLIHRIKHLVERGIPPSQILVLTFTNKAAHELVER 63
Query: 298 IGSIVGKATAKELTISTFHSFSLQLCRSH 326
+ + G A A ++ TFH+F L+ R +
Sbjct: 64 L-KVSGIAGAADVWAGTFHAFGLEFLRKY 91
Score = 82 (33.9 bits), Expect = 9.5e-14, Sum P(3) = 9.5e-14
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 849 NSVTLTTIHQSKGLEWDIVFVAKANETEI----PLVHEFNG-------AVNEKGTS-VEE 896
++V++ T+H SKGLE+ + V ++ P ++ G +N G + E
Sbjct: 569 DAVSVMTVHSSKGLEYPAIHVTDVDDASYGANRPFAYDVRGLDLIPPEVLNSNGAEFMFE 628
Query: 897 ER----RLLYVAMTRARKKLFI 914
ER LLYVA++RAR L++
Sbjct: 629 ERVERNNLLYVALSRARDYLYL 650
>TIGR_CMR|GSU_1534 [details] [associations]
symbol:GSU_1534 "exodeoxyribonuclease V, beta subunit"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006281 "DNA
repair" evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0008854 "exodeoxyribonuclease V activity" evidence=ISS]
[GO:0009338 "exodeoxyribonuclease V complex" evidence=ISS]
InterPro:IPR000212 InterPro:IPR004586 InterPro:IPR011604
InterPro:IPR014016 InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361
PROSITE:PS51198 PROSITE:PS51217 GO:GO:0005524 GO:GO:0003677
GO:GO:0006281 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0004003
GO:GO:0090305 Gene3D:3.90.320.10 InterPro:IPR011335
PANTHER:PTHR11070 SUPFAM:SSF52980 GO:GO:0008854
HOGENOM:HOG000258330 KO:K03582 TIGRFAMs:TIGR00609
RefSeq:NP_952585.1 ProteinModelPortal:Q74CY7 GeneID:2685262
KEGG:gsu:GSU1534 PATRIC:22025915 OMA:DERIWER ProtClustDB:CLSK904053
BioCyc:GSUL243231:GH27-1534-MONOMER Uniprot:Q74CY7
Length = 1204
Score = 154 (59.3 bits), Expect = 1.2e-12, Sum P(5) = 1.2e-12
Identities = 31/89 (34%), Positives = 55/89 (61%)
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQILASHNRITI--VGDDDQSIFSFNGADISGFDSFRK 530
++ ++A ++DEFQDT +QY + + + S + + +GD Q+I+SF GAD+ + R+
Sbjct: 370 RERYRAALIDEFQDTDQVQYRIFRAVFSGGAVPLFLIGDPKQAIYSFRGADVFAYLEARQ 429
Query: 531 DFLNYKEIRLTRNYRSTRCIVEAASSLIQ 559
+ + + RN+RST +VEA SSL +
Sbjct: 430 EIPAERRFTMDRNWRSTPEMVEAVSSLFR 458
Score = 81 (33.6 bits), Expect = 1.2e-12, Sum P(5) = 1.2e-12
Identities = 26/89 (29%), Positives = 46/89 (51%)
Query: 838 EHFRTQRHDNENSVTLTTIHQSKGLEWDIVFV-----AKANETEIPLVHEFN-GAVNEKG 891
E ++ + ++ +V + T+H SKGLE+ +VF ++ ++ L HE V + G
Sbjct: 722 EDYQIRLESDDRAVRIVTVHVSKGLEYPVVFAPFMWGGLRDDGDLTLCHEEGYRLVADFG 781
Query: 892 TSVEEERRLLYVAMTRA-RKKLFILYVMM 919
T +ER+ A T A + L +LYV +
Sbjct: 782 TDRRDERQRR--ARTEALAENLRLLYVAL 808
Score = 77 (32.2 bits), Expect = 1.2e-12, Sum P(5) = 1.2e-12
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 273 GKGISPSNILAMTFTTAAASEMRDRI 298
G+G+ P NIL +TFT AA E+R RI
Sbjct: 43 GEGLLPDNILVVTFTEAATKELRARI 68
Score = 59 (25.8 bits), Expect = 1.8e-10, Sum P(5) = 1.8e-10
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 893 SVEEERRLLYVAMTRARKKLFILY 916
++ E RLLYVA+TRAR + ++++
Sbjct: 796 ALAENLRLLYVALTRARCRAYLVW 819
Score = 50 (22.7 bits), Expect = 1.2e-12, Sum P(5) = 1.2e-12
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 614 GSIAILYRRQVSGKVFQTAFRERKIP 639
G +A++ R + Q A RER IP
Sbjct: 552 GDVAVIVRSHFEAGLVQQALRERGIP 577
Score = 39 (18.8 bits), Expect = 1.2e-12, Sum P(5) = 1.2e-12
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 1058 DVLRALKSCLSSNE 1071
D++RAL CL+ E
Sbjct: 1187 DLVRALTDCLAGRE 1200
>UNIPROTKB|Q0BZ49 [details] [associations]
symbol:HNE_2551 "UvrD/REP helicase domain protein"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000212
InterPro:IPR014016 InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361
PROSITE:PS51198 PROSITE:PS51217 GO:GO:0005524 GO:GO:0003677
GO:GO:0004003 PANTHER:PTHR11070 EMBL:CP000158
GenomeReviews:CP000158_GR Gene3D:1.10.10.160 InterPro:IPR013986
eggNOG:COG0210 InterPro:IPR010359 Pfam:PF06114 RefSeq:YP_761244.1
STRING:Q0BZ49 GeneID:4289181 KEGG:hne:HNE_2551 PATRIC:32217951
HOGENOM:HOG000228865 OMA:VGDARQS ProtClustDB:CLSK913016
BioCyc:HNEP228405:GI69-2572-MONOMER Uniprot:Q0BZ49
Length = 1137
Score = 178 (67.7 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 87/327 (26%), Positives = 143/327 (43%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGKGISPSNILAMTFTTAAASEM-------RDRIGS 300
LN++Q AA G +L+ AGPG+GK + L++ E G
Sbjct: 197 LNEEQKRAA-GHDGKAVLLKAGPGTGKTQTLVGRLSVLKNRGVDPESILLLTFSNKAAGE 255
Query: 301 IVGKATAK------ELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI--IEAV 352
+ +A A I TFHSF L L R ++ G R I EA+
Sbjct: 256 MTDRAIAAWPAAAGSAWIGTFHSFGLDLLRRFHDRA---------GLPPDPRLIDATEAI 306
Query: 353 RLLENE-KILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
LLE+E L +K + TD +R+ L ++ + + Y + +
Sbjct: 307 ALLEDEFPRLRLKHFNDLWDPTDN----LRSILSAISRAKDEVVDQHR---YRELAQQMA 359
Query: 412 DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQE 471
D A+ + + A + + EI A++ + Y + A+D+ DLI+ L+ + V E
Sbjct: 360 DAAETAEEQAAAEKCL--EI-ASVYDLYEQLKSDRGAVDFGDLIARPTALVESDEAVRVE 416
Query: 472 YQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSFR- 529
Q ++ ++VDE+QD + LL+ L + + +VGD QSI+ F GA D F
Sbjct: 417 IQRRYEHVLVDEYQDVNRASVRLLRALKPDGSNLWVVGDAKQSIYRFRGASSYNIDRFET 476
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASS 556
+DF ++L+ NYRS++ I S+
Sbjct: 477 EDFPGGTSLQLSTNYRSSQEICNTFST 503
Score = 93 (37.8 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 33/118 (27%), Positives = 56/118 (47%)
Query: 849 NSVTLTTIHQSKGLEWDIVFVAKANETEIPL-------VHEFNGAVNE---KGTSV---- 894
N+V L TIH SKGLE+ ++ + IP +H +G + +G+
Sbjct: 763 NAVRLMTIHGSKGLEFKMLHLPSLTSDSIPRSAKQSRGLHPPDGMIEGPMFRGSDAIDAG 822
Query: 895 --EEERRLLYVAMTRARKKLFILYVMMDANWQLLQPSRFLKEIPHHLREVQAEQSVQD 950
EE+R L +VA++RA+ LF+ +N S F+ +I L + + +V+D
Sbjct: 823 HDEEQRCLFFVALSRAKDGLFLYAPNKKSNGHRQSRSSFVDDISGQLADQKPISAVRD 880
Score = 39 (18.8 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 1015 RSIISHLFHQWAKKKAFQEPKRLLNKVDFVIDE 1047
R +H+ Q ++ P R+ N V VIDE
Sbjct: 912 RFFFAHVL-QVGGRRLESAPMRMHNAVQAVIDE 943
Score = 37 (18.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 645 VAFYRKKVVRAIIAMLRTTLP 665
+A +KK+ A+I+++ P
Sbjct: 1081 IATRKKKIANAVISIIEGRFP 1101
>POMBASE|SPBC336.01 [details] [associations]
symbol:fbh1 "DNA helicase I" species:4896
"Schizosaccharomyces pombe" [GO:0000018 "regulation of DNA
recombination" evidence=IGI] [GO:0000151 "ubiquitin ligase complex"
evidence=ISM] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IGI] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006310 "DNA
recombination" evidence=IGI] [GO:0017116 "single-stranded
DNA-dependent ATP-dependent DNA helicase activity" evidence=IDA]
[GO:0030674 "protein binding, bridging" evidence=ISM] [GO:0031297
"replication fork processing" evidence=IMP] InterPro:IPR000212
InterPro:IPR001810 InterPro:IPR014016 InterPro:IPR014017
Pfam:PF00580 Pfam:PF13361 PROSITE:PS50181 SMART:SM00256
UniPathway:UPA00143 PomBase:SPBC336.01 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0030674 GO:GO:0016567 PANTHER:PTHR11070 GO:GO:0000724
GO:GO:0000151 GO:GO:0031297 GO:GO:0000018 EMBL:AF380117
RefSeq:NP_596121.3 ProteinModelPortal:Q9USU3 IntAct:Q9USU3
STRING:Q9USU3 EnsemblFungi:SPBC336.01.1 GeneID:2540244
KEGG:spo:SPBC336.01 eggNOG:COG0210 KO:K10300 OrthoDB:EOG4G1QQN
NextBio:20801375 GO:GO:0017116 Uniprot:Q9USU3
Length = 878
Score = 134 (52.2 bits), Expect = 7.7e-12, Sum P(2) = 7.7e-12
Identities = 36/117 (30%), Positives = 60/117 (51%)
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGAD 521
L FP +F +Y I+ DE QD + L+ H RI IVGD Q I+ F GA+
Sbjct: 469 LYEFPNIFSKYD----YILFDEAQDFTPCMVDLIY-RQKHARIVIVGDAHQCIYGFRGAN 523
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGS 578
F+ + + K++ LT+++R + + A+ L+ + +LK VQ D+++ S
Sbjct: 524 ACAFNE--NLYPSTKQLCLTKSFRFGNSVAKYANFLLSLKGENVKLKGVQNDHAYWS 578
Score = 120 (47.3 bits), Expect = 7.7e-12, Sum P(2) = 7.7e-12
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 826 KAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNG 885
++F+ + E + + D +N + L T HQSKGLEWD V + + V F+
Sbjct: 689 ESFLSRLDNCE-KRLMDSKDDGDNGIILATAHQSKGLEWDNVQLGNDFRPKFDSV-SFSR 746
Query: 886 AVNEKGTSVEEERRLLYVAMTRARKKLFI 914
+ + ++EE +LYVA+TRA+K+L +
Sbjct: 747 IGSSR--YLQEEINILYVALTRAKKRLIL 773
>TIGR_CMR|BA_1142 [details] [associations]
symbol:BA_1142 "ATP-dependent nuclease, subunit A"
species:198094 "Bacillus anthracis str. Ames" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0004527
"exonuclease activity" evidence=ISS] [GO:0006259 "DNA metabolic
process" evidence=ISS] HAMAP:MF_01451 InterPro:IPR000212
InterPro:IPR011604 InterPro:IPR014016 InterPro:IPR014017
InterPro:IPR014152 Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198
PROSITE:PS51217 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 RefSeq:NP_843626.1
RefSeq:YP_017760.1 RefSeq:YP_027333.1 HSSP:P09980
ProteinModelPortal:Q81TW1 IntAct:Q81TW1
EnsemblBacteria:EBBACT00000010393 EnsemblBacteria:EBBACT00000017222
EnsemblBacteria:EBBACT00000021366 GeneID:1089102 GeneID:2819972
GeneID:2848175 KEGG:ban:BA_1142 KEGG:bar:GBAA_1142 KEGG:bat:BAS1061
eggNOG:COG1074 HOGENOM:HOG000015621 OMA:CEWALEL
ProtClustDB:CLSK887026 BioCyc:BANT260799:GJAJ-1137-MONOMER
BioCyc:BANT261594:GJ7F-1188-MONOMER GO:GO:0004003 GO:GO:0004527
GO:GO:0006302 GO:GO:0090305 Gene3D:3.90.320.10 InterPro:IPR011335
PANTHER:PTHR11070 SUPFAM:SSF52980 TIGRFAMs:TIGR02785 Uniprot:Q81TW1
Length = 1241
Score = 107 (42.7 bits), Expect = 8.2e-12, Sum P(4) = 8.2e-12
Identities = 45/188 (23%), Positives = 86/188 (45%)
Query: 437 ENYNGILRSCNALDYHDLISCSVKLLSTFPE--------VFQEYQDSWKAIIVDEFQDTS 488
E + + R +D+ DL +++LS E V +Y++ + ++VDE+QDT+
Sbjct: 358 ERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRNKFAEVLVDEYQDTN 417
Query: 489 AMQYSLLQILA----SHNRITIVGDDDQSIFSFNGAD----ISGFDSFRKDFLNY-KEIR 539
+Q S+++ + S + +VGD QSI+ F A+ + + F ++ L +I
Sbjct: 418 FVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGLFLGKYKRFTQEGLGGGMKID 477
Query: 540 LTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFI-IDK 598
L +N+RS R V A ++ I + ++ + D K+ ED + I +
Sbjct: 478 LAKNFRS-RHEVLAGTNFIFKQIMGEEVGEIDYDADAELKLGASYPEGEDVAAELLCIQQ 536
Query: 599 ILEHASNG 606
E +G
Sbjct: 537 TEEEVIDG 544
Score = 86 (35.3 bits), Expect = 8.2e-12, Sum P(4) = 8.2e-12
Identities = 34/119 (28%), Positives = 53/119 (44%)
Query: 239 DEYSKYLQSLNDQQLEAACGDMSTPLLI--VAGP--GSGKGISPSNILAMTFTTAAASEM 294
D++ + + D + AA G T +L+ + + +L +TFT AAA EM
Sbjct: 17 DQWKAVVATGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEM 76
Query: 295 RDRIGSIVGKA---------TAKELT------ISTFHSFSLQLCRSHAEKLERTSEFLI 338
++RIG + K K+L+ IST HSF LQ+ R + L+ F I
Sbjct: 77 KNRIGEALEKVLIDEPGSQHVRKQLSLLNKASISTIHSFCLQVIRGYYYMLDVDPRFRI 135
Score = 82 (33.9 bits), Expect = 8.2e-12, Sum P(4) = 8.2e-12
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 819 KGCINVLKAFIDYISERETEHFRTQRH--DNENSVTLTTIHQSKGLEWDIVFVA 870
+G L+ FI+ I ER + T R + E+ V + TIH+SKGLE+ +VFVA
Sbjct: 763 RGLFRFLR-FIERILERGDD-MGTARALGEQEDVVRIMTIHKSKGLEFPVVFVA 814
Score = 78 (32.5 bits), Expect = 8.2e-12, Sum P(4) = 8.2e-12
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 894 VEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ--PSRFLKE--IPHHLR 940
+ EE R+LYVA+TRA++KL ++ + DA ++ + +R E +P H+R
Sbjct: 867 IAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVR 917
Score = 56 (24.8 bits), Expect = 1.0e-06, Sum P(4) = 1.0e-06
Identities = 28/115 (24%), Positives = 53/115 (46%)
Query: 389 AMLFFSMSSFKLCQYNKFERDGM-DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCN 447
AM S + K + + + D + V K E +K+ +E+ + E++ LR
Sbjct: 284 AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESF---LRDFQ 340
Query: 448 ALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN 502
D H ++ V+L+ F E FQ + K ++ +F D +++ LQIL+ +
Sbjct: 341 --DMHPVLEKLVQLVKVFTERFQAMKRD-KGMV--DFTD---LEHFCLQILSEQS 387
Score = 44 (20.5 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 8/26 (30%), Positives = 19/26 (73%)
Query: 151 DFDDSILQEIDAICEKSAAKDVRKAQ 176
D+++ I++++D++ K A +V+K Q
Sbjct: 300 DYNEDIVKQVDSLRNK-AKDEVKKLQ 324
>TIGR_CMR|CPS_2454 [details] [associations]
symbol:CPS_2454 "helicase IV" species:167879 "Colwellia
psychrerythraea 34H" [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0006268 "DNA unwinding involved in
replication" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR000212 InterPro:IPR013498 InterPro:IPR014016
InterPro:IPR014017 Pfam:PF00580 Pfam:PF01396 Pfam:PF13361
PROSITE:PS51198 GO:GO:0005524 GO:GO:0005694 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0004003 PANTHER:PTHR11070
GO:GO:0006265 eggNOG:COG0210 HOGENOM:HOG000118816 KO:K03658
GO:GO:0003916 RefSeq:YP_269170.1 ProteinModelPortal:Q481U8
STRING:Q481U8 GeneID:3520645 KEGG:cps:CPS_2454 PATRIC:21467979
OMA:TSVMVGR ProtClustDB:CLSK938214
BioCyc:CPSY167879:GI48-2517-MONOMER Uniprot:Q481U8
Length = 1042
Score = 147 (56.8 bits), Expect = 2.8e-11, Sum P(3) = 2.8e-11
Identities = 41/130 (31%), Positives = 69/130 (53%)
Query: 435 ILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSL 494
IL Y L + +D+ D+I+ K L T+ + Q ++ W+ I+VDEFQD S + L
Sbjct: 607 ILSAYEQHLAQHHEIDFEDMIN---KAL-TYVQAGQ-FKSPWRYIMVDEFQDISEPRARL 661
Query: 495 LQILASHNR---ITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIV 551
++ L +N+ + VGDD Q+I+ F+GAD++ F F + + L + +R I
Sbjct: 662 VKALRDNNKECSVFAVGDDWQAIYRFSGADVTLTTQFSNYFGSTTQSELDQTFRFNNQIG 721
Query: 552 EAASSLIQHN 561
+ A+ I N
Sbjct: 722 KVATDFISKN 731
Score = 98 (39.6 bits), Expect = 2.8e-11, Sum P(3) = 2.8e-11
Identities = 41/118 (34%), Positives = 59/118 (50%)
Query: 850 SVTLTTIHQSKGLEWDIVFVA---KA-----NETEIPLVHEFNGAVNEKGTSVEEERRLL 901
++ + H SKG E D V + K +E P ++E A EK EERRLL
Sbjct: 820 TIDAQSFHTSKGKEADYVIIVGLKKGAHGFPSEKVTPALNEALLAKKEK-FPYAEERRLL 878
Query: 902 YVAMTRARKKLFILYVMMDANWQLLQPSRFLKEI--PHHLR----EVQAEQS-VQDQH 952
YVA+TRA+ +++I+ M ++N P F+KE+ H + E A QS V D H
Sbjct: 879 YVALTRAKDRVYIIADMTESN-----P--FVKELVNDHQIELNEFECTATQSLVDDLH 929
Score = 53 (23.7 bits), Expect = 2.8e-11, Sum P(3) = 2.8e-11
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 281 ILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQL 322
IL + + AA+EM +RI K + +++ +TFH L +
Sbjct: 267 ILLLAYGRKAANEMDERIRD---KLSTDKISATTFHRLGLSI 305
>UNIPROTKB|Q3AA35 [details] [associations]
symbol:addA "ATP-dependent helicase/nuclease subunit A"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004527 "exonuclease activity" evidence=ISS] [GO:0006302
"double-strand break repair" evidence=ISS] HAMAP:MF_01451
InterPro:IPR000212 InterPro:IPR011604 InterPro:IPR014016
InterPro:IPR014017 InterPro:IPR014152 Pfam:PF00580 Pfam:PF13361
PROSITE:PS51198 PROSITE:PS51217 GO:GO:0005524 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR eggNOG:COG1074
HOGENOM:HOG000015621 GO:GO:0004003 GO:GO:0004527 GO:GO:0006302
Gene3D:3.90.320.10 InterPro:IPR011335 PANTHER:PTHR11070
SUPFAM:SSF52980 TIGRFAMs:TIGR02785 RefSeq:YP_360999.1 HSSP:P56255
ProteinModelPortal:Q3AA35 STRING:Q3AA35 GeneID:3728741
KEGG:chy:CHY_2186 PATRIC:21277439 OMA:QESSDEN
BioCyc:CHYD246194:GJCN-2185-MONOMER Uniprot:Q3AA35
Length = 1167
Score = 131 (51.2 bits), Expect = 6.0e-10, Sum P(4) = 6.0e-10
Identities = 33/116 (28%), Positives = 65/116 (56%)
Query: 450 DYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVG 508
D+ DL ++ +L + V++E ++ + I+VDE+QD + +Q +L ++ + + +VG
Sbjct: 355 DFSDLEHWALDILKS--GVYRELREKYVEILVDEYQDINGLQEEILTYVSRDGQNLFMVG 412
Query: 509 DDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKR 564
D QSI+ F A F +DF + K+I L+ N+RS I+ + + + +K+
Sbjct: 413 DVKQSIYRFRWARPEIFLKKYEDFTDEKKIELSLNFRSREEIIATVNFIFKQIMKK 468
Score = 71 (30.1 bits), Expect = 6.0e-10, Sum P(4) = 6.0e-10
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 893 SVEEERRLLYVAMTRARKKLFILYVMMD-----ANWQ 924
++ EE R+LYVA+TRAR+KL ++ + + A WQ
Sbjct: 828 TLAEEMRILYVALTRAREKLILVGTVKNLAKKMAGWQ 864
Score = 68 (29.0 bits), Expect = 6.0e-10, Sum P(4) = 6.0e-10
Identities = 15/45 (33%), Positives = 30/45 (66%)
Query: 828 FIDYISER-ETEHFRTQR--HDNENSVTLTTIHQSKGLEWDIVFV 869
F+ ++S+ E+E F + + ++ V + ++H+SKGLE+ +VFV
Sbjct: 732 FLTFLSQAAESEDFSPAKLIGEADDVVRVMSVHKSKGLEFPVVFV 776
Score = 62 (26.9 bits), Expect = 6.0e-10, Sum P(4) = 6.0e-10
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 281 ILAMTFTTAAASEMRDRIGS 300
+L +TFT AAA EM++R+G+
Sbjct: 53 LLVVTFTEAAAGEMKERLGT 72
Score = 38 (18.4 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILY 916
NG E T+V E RL+ + + +++ F ++
Sbjct: 511 NGEPEEDLTAVHREARLVAAKILKLKEEGFKVF 543
Score = 37 (18.1 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 11/66 (16%), Positives = 29/66 (43%)
Query: 726 LTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDND 785
LT+ R+ L+ + + L ++ + ++ + + + +D+ G + E +D
Sbjct: 840 LTRAREKLILVGTVKNLAKKMAGWQSQTEALKDTLSDGQIARAGNFLDWIGPVVFREGSD 899
Query: 786 LRSVLQ 791
L L+
Sbjct: 900 LPDCLK 905
>TIGR_CMR|CHY_2186 [details] [associations]
symbol:CHY_2186 "exonuclease RexA" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0004527 "exonuclease
activity" evidence=ISS] [GO:0006302 "double-strand break repair"
evidence=ISS] HAMAP:MF_01451 InterPro:IPR000212 InterPro:IPR011604
InterPro:IPR014016 InterPro:IPR014017 InterPro:IPR014152
Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198 PROSITE:PS51217
GO:GO:0005524 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
eggNOG:COG1074 HOGENOM:HOG000015621 GO:GO:0004003 GO:GO:0004527
GO:GO:0006302 Gene3D:3.90.320.10 InterPro:IPR011335
PANTHER:PTHR11070 SUPFAM:SSF52980 TIGRFAMs:TIGR02785
RefSeq:YP_360999.1 HSSP:P56255 ProteinModelPortal:Q3AA35
STRING:Q3AA35 GeneID:3728741 KEGG:chy:CHY_2186 PATRIC:21277439
OMA:QESSDEN BioCyc:CHYD246194:GJCN-2185-MONOMER Uniprot:Q3AA35
Length = 1167
Score = 131 (51.2 bits), Expect = 6.0e-10, Sum P(4) = 6.0e-10
Identities = 33/116 (28%), Positives = 65/116 (56%)
Query: 450 DYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVG 508
D+ DL ++ +L + V++E ++ + I+VDE+QD + +Q +L ++ + + +VG
Sbjct: 355 DFSDLEHWALDILKS--GVYRELREKYVEILVDEYQDINGLQEEILTYVSRDGQNLFMVG 412
Query: 509 DDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKR 564
D QSI+ F A F +DF + K+I L+ N+RS I+ + + + +K+
Sbjct: 413 DVKQSIYRFRWARPEIFLKKYEDFTDEKKIELSLNFRSREEIIATVNFIFKQIMKK 468
Score = 71 (30.1 bits), Expect = 6.0e-10, Sum P(4) = 6.0e-10
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 893 SVEEERRLLYVAMTRARKKLFILYVMMD-----ANWQ 924
++ EE R+LYVA+TRAR+KL ++ + + A WQ
Sbjct: 828 TLAEEMRILYVALTRAREKLILVGTVKNLAKKMAGWQ 864
Score = 68 (29.0 bits), Expect = 6.0e-10, Sum P(4) = 6.0e-10
Identities = 15/45 (33%), Positives = 30/45 (66%)
Query: 828 FIDYISER-ETEHFRTQR--HDNENSVTLTTIHQSKGLEWDIVFV 869
F+ ++S+ E+E F + + ++ V + ++H+SKGLE+ +VFV
Sbjct: 732 FLTFLSQAAESEDFSPAKLIGEADDVVRVMSVHKSKGLEFPVVFV 776
Score = 62 (26.9 bits), Expect = 6.0e-10, Sum P(4) = 6.0e-10
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 281 ILAMTFTTAAASEMRDRIGS 300
+L +TFT AAA EM++R+G+
Sbjct: 53 LLVVTFTEAAAGEMKERLGT 72
Score = 38 (18.4 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILY 916
NG E T+V E RL+ + + +++ F ++
Sbjct: 511 NGEPEEDLTAVHREARLVAAKILKLKEEGFKVF 543
Score = 37 (18.1 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 11/66 (16%), Positives = 29/66 (43%)
Query: 726 LTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDND 785
LT+ R+ L+ + + L ++ + ++ + + + +D+ G + E +D
Sbjct: 840 LTRAREKLILVGTVKNLAKKMAGWQSQTEALKDTLSDGQIARAGNFLDWIGPVVFREGSD 899
Query: 786 LRSVLQ 791
L L+
Sbjct: 900 LPDCLK 905
>UNIPROTKB|O53347 [details] [associations]
symbol:Rv3201c "PROBABLE ATP-DEPENDENT DNA HELICASE"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005576
"extracellular region" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] InterPro:IPR000212
InterPro:IPR014016 InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361
PROSITE:PS51198 PROSITE:PS51217 GO:GO:0005886 GO:GO:0005524
GO:GO:0040007 GO:GO:0005576 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0006281 EMBL:BX842582
GO:GO:0004003 GO:GO:0004527 GO:GO:0090305 InterPro:IPR011335
PANTHER:PTHR11070 SUPFAM:SSF52980 HSSP:P56255 KO:K03657
EMBL:CP003248 PIR:G70951 RefSeq:NP_217717.1 RefSeq:NP_337824.1
RefSeq:YP_006516671.1 SMR:O53347 EnsemblBacteria:EBMYCT00000003938
EnsemblBacteria:EBMYCT00000070505 GeneID:13318017 GeneID:887663
GeneID:923285 KEGG:mtc:MT3295 KEGG:mtu:Rv3201c KEGG:mtv:RVBD_3201c
PATRIC:18129004 TubercuList:Rv3201c HOGENOM:HOG000247959
OMA:TAVGDPC ProtClustDB:CLSK792340 Uniprot:O53347
Length = 1101
Score = 125 (49.1 bits), Expect = 1.9e-09, Sum P(4) = 1.9e-09
Identities = 51/226 (22%), Positives = 91/226 (40%)
Query: 449 LDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-----R 503
+D+ ++ + +L +T P+V Q+ + ++ +++DE+QDT Q +L L
Sbjct: 248 MDFAMQMASAARLAATSPQVGQDLRRRYRVVLLDEYQDTGHAQRVVLSSLFGGGVDDGLA 307
Query: 504 ITIVGDDDQSIFSFNGADISGFDSFRKDF-LN----YKEIRLTRNYRSTRCIVEAASSLI 558
+T VGD QSI+ + GA + F DF L+ + L ++R+ + A+ +
Sbjct: 308 LTAVGDPIQSIYGWRGASATNLPRFTTDFPLSDGTPAPVLELLTSWRNPPQALRVANGIS 367
Query: 559 QHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCA--FIIDKILEHASNGPASICSYGSI 616
+R ++ D Q +I D + A +
Sbjct: 368 AEARRRSVAVRALRPRPDAPPGAVRCALLPDVQAEREWIADHLRMRYQRAEADGVKPPTA 427
Query: 617 AILYRRQVSGKVFQTAFRERKIPFNIHGVA-FYRKKVVRAIIAMLR 661
A+L RR R R IP + G+A V ++AMLR
Sbjct: 428 AVLVRRNADAAAIADTLRARGIPAEVVGLAGLLSIPEVAEVVAMLR 473
Score = 70 (29.7 bits), Expect = 1.9e-09, Sum P(4) = 1.9e-09
Identities = 25/69 (36%), Positives = 34/69 (49%)
Query: 894 VEEERRLLYVAMTRARKKLFIL-YVMMDANWQLLQPSRFLKEIPHHL-REVQAEQ--SVQ 949
V+EERRLLYVA+TRA L + + + PS FL E+ + R A V
Sbjct: 748 VDEERRLLYVAVTRAEDTLLVSGHHWGPTGTKPRGPSEFLCELKDIIDRSAAAGDPCGVV 807
Query: 950 DQHENIPEG 958
+Q + P G
Sbjct: 808 EQWASAPAG 816
Score = 66 (28.3 bits), Expect = 1.9e-09, Sum P(4) = 1.9e-09
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 263 PLLIVAGPGSGK--------------GIS-PSNILAMTFTTAAASEM----RDRIGSIVG 303
PL+++AG G+GK G + P +L +TFT AA ++ R R+ + G
Sbjct: 38 PLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLGLTFTRKAAGQLLRRVRSRLARLAG 97
Query: 304 ------KATAKELTISTFHSFSLQLCRSH 326
A +ST+H+F+ L R +
Sbjct: 98 IGLGCGDPAACAPVVSTYHAFAGSLLRDY 126
Score = 65 (27.9 bits), Expect = 1.9e-09, Sum P(4) = 1.9e-09
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 851 VTLTTIHQSKGLEWDIVFVAKANETEIP 878
V + T+H +KGLEW +V VA + P
Sbjct: 660 VQVLTVHAAKGLEWQVVAVAHLSRGVFP 687
>TIGR_CMR|CJE_1654 [details] [associations]
symbol:CJE_1654 "ATP-dependent DNA helicase, UvrD/REP
family" species:195099 "Campylobacter jejuni RM1221" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] InterPro:IPR000212 InterPro:IPR014016
InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198
PROSITE:PS51217 GO:GO:0005524 GO:GO:0003677 EMBL:CP000025
GenomeReviews:CP000025_GR eggNOG:COG1074 GO:GO:0004003
PANTHER:PTHR11070 KO:K03582 PIR:F81294 RefSeq:YP_179635.1
ProteinModelPortal:Q5HSV0 STRING:Q5HSV0 GeneID:3232282
KEGG:cjr:CJE1654 PATRIC:20045103 HOGENOM:HOG000101288 OMA:NFGIALH
ProtClustDB:PRK13909 BioCyc:CJEJ195099:GJC0-1684-MONOMER
Uniprot:Q5HSV0
Length = 921
Score = 151 (58.2 bits), Expect = 2.0e-09, Sum P(4) = 2.0e-09
Identities = 62/230 (26%), Positives = 99/230 (43%)
Query: 447 NALDYHDLISCSVKLL-STFPEVFQEYQDSWKA-IIVDEFQDTSAMQYSLLQILASH--- 501
N L++ D+ +L+ S F ++ D + + +++DEFQDTS +QY +L+ L +
Sbjct: 300 NTLNFQDVSKKVYELITSEFKDMIYFRLDGFISHLLIDEFQDTSVIQYQILRPLIAELVS 359
Query: 502 ------NRITI-VGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAA 554
NR VGD QSI+ F FD +++F K L NYRS +V+
Sbjct: 360 GEGVKKNRTFFYVGDKKQSIYRFRKGKKELFDLLKQEFSQIKSDNLNTNYRSKELLVDFV 419
Query: 555 SSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDA--QCAFIIDKILE---HASNGPAS 609
+ + +K + + ++ G + I E + Q I +K LE N S
Sbjct: 420 NETFKEKIKDYK-EQFALESKKGGFVRIVESKEQKVKNQAQEIKEKTLETLFEQINFLRS 478
Query: 610 I-CSYGSIAILYRRQVSGKVFQTAFRERKIP-FNIHGVAFYRKKVVRAII 657
SY I IL + + RE+ IP F V K VR ++
Sbjct: 479 KNISYDDICILCWKNSDADMVLDFLREQNIPAFTQSNVLLENKASVRLVL 528
Score = 65 (27.9 bits), Expect = 2.0e-09, Sum P(4) = 2.0e-09
Identities = 21/47 (44%), Positives = 26/47 (55%)
Query: 253 LEAACGDMSTPLLIVAGPGSG-KGISPSNILAMTFTTAAASEMRDRI 298
LEA+ G T L V KG + ILA+TFT AA+EM+ RI
Sbjct: 10 LEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRI 56
Score = 56 (24.8 bits), Expect = 2.0e-09, Sum P(4) = 2.0e-09
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 864 WDIVFVAKANE-TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFIL 915
W + K E T+ P+ F + + E++ LYVA TRA++ L I+
Sbjct: 659 WQLHIKDKIRELTKEPIYTLFKENITR--ANYEDDINKLYVAFTRAKESLIII 709
Score = 54 (24.1 bits), Expect = 9.3e-08, Sum P(3) = 9.3e-08
Identities = 23/139 (16%), Positives = 63/139 (45%)
Query: 120 LDISDPFITPIKQPEFFNMSESFSMPSPLDDDFDD-SILQEIDAICEKSAAKDVRKAQNS 178
LD+ + F+ +K+ E +++ ++ ++ F++ E + + KA +
Sbjct: 135 LDVREIFLKLLKKDELKDLAYYINLVDEKENFFNELEKFYENAYFQNRPKILNPTKAYIN 194
Query: 179 GIYEETHQNDNSCTHLNASLESVTTN-ENIRMDISMDLAGDMKSSMEKTDTIQTIKTQNM 237
Y E TH+ + +++ N ++ +D+S+ + + E T +Q +++ N+
Sbjct: 195 KAYSELRSYCLGLTHVK-NYKNLCDNFKSEVLDLSVFMQSSFMTKFESTKYLQDLESTNL 253
Query: 238 --PDEYSKYLQSLNDQQLE 254
+ +++ +LN +E
Sbjct: 254 HFSAKRMEFINALNTYAIE 272
Score = 53 (23.7 bits), Expect = 3.9e-09, Sum P(4) = 3.9e-09
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 851 VTLTTIHQSKGLEWDIVFVA------KANETEIPLVHEFN 884
+++ ++H+SKGLE+D V + +N +I L ++ N
Sbjct: 617 ISIMSVHKSKGLEFDHVILLDSLSKNNSNNEDIMLEYDIN 656
Score = 49 (22.3 bits), Expect = 2.0e-09, Sum P(4) = 2.0e-09
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 309 ELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEA-VRLLENEKI 360
EL ISTF +F ++ R A L +S+F + ++R + E ++LL+ +++
Sbjct: 101 ELKISTFDAFFGKILRVFALNLGLSSDFTM---SEERLDVREIFLKLLKKDEL 150
>SGD|S000005455 [details] [associations]
symbol:HMI1 "Mitochondrial inner membrane localized
ATP-dependent DNA helicase" species:4932 "Saccharomyces cerevisiae"
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0032042
"mitochondrial DNA metabolic process" evidence=IMP] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IDA]
[GO:0005759 "mitochondrial matrix" evidence=IDA] [GO:0000002
"mitochondrial genome maintenance" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR000212 InterPro:IPR014016
InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198
PROSITE:PS51217 SGD:S000005455 GO:GO:0005524 EMBL:BK006948
GO:GO:0005743 GO:GO:0005759 GO:GO:0003677 GO:GO:0006281
PANTHER:PTHR11070 EMBL:X83121 GO:GO:0043140 EMBL:Z48149 EMBL:Z74837
eggNOG:COG0210 EMBL:U26030 PIR:S57374 RefSeq:NP_014546.1
ProteinModelPortal:Q12039 SMR:Q12039 DIP:DIP-4225N MINT:MINT-509468
STRING:Q12039 EnsemblFungi:YOL095C GeneID:854058 KEGG:sce:YOL095C
CYGD:YOL095c GeneTree:ENSGT00530000066700 HOGENOM:HOG000112919
OMA:SFAYEQN OrthoDB:EOG4BCHWQ NextBio:975653 Genevestigator:Q12039
GermOnline:YOL095C GO:GO:0032042 Uniprot:Q12039
Length = 706
Score = 130 (50.8 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 53/224 (23%), Positives = 99/224 (44%)
Query: 435 ILENYNGILRSCNALDYHDLISCSVKLL------STFPEVFQEYQDSWKAIIVDEFQDTS 488
++E ++ +C + DLI + K L S Q+ ++ +K +++DEFQD
Sbjct: 157 VIEKLVELMDNCKVMTNDDLIIRAKKYLELDSSDSDASSFTQDLRNKYKVVLIDEFQDLY 216
Query: 489 AMQYSLLQILASHNRITIVGDDDQSIFSFNGAD---ISGFDSFRKDFLNYKEIRLTRNYR 545
L+ ++ ++ + GD +QSI+ F G++ +S D+ + ++L N+R
Sbjct: 217 PSLAPLITMICKGKQLIMFGDTNQSIYGFLGSNNEIMSQLDNLHPKN-STTVLKLFDNFR 275
Query: 546 STRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI------IIKECHNED---AQCAFII 596
ST I+ AS +I + Q+ + TD + + + + D A+ FII
Sbjct: 276 STPEIISLASKIINRPLAEKQIID-DTDETPSELVRKLPSGVSPQIMTFDDLAAESEFII 334
Query: 597 DKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
DKI + S + IAIL R + ++ IP+
Sbjct: 335 DKITQLI----CSSAKFSDIAILSRTNSHLTAIASILKKYGIPY 374
Score = 77 (32.2 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 24/85 (28%), Positives = 40/85 (47%)
Query: 822 INVLKAFID-YISERETEHFRTQ--RHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
I+ +K F++ Y + H Q + +V L+TIH +KGLE+ IVF+ + + P
Sbjct: 551 ISFVKWFLETYFDQTMVFHQSQQALQTTGPGTVKLSTIHSAKGLEFPIVFLTNGSMSNFP 610
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYV 903
+ N + R LLY+
Sbjct: 611 M------DTNALYVGITRARNLLYM 629
Score = 52 (23.4 bits), Expect = 4.1e-05, Sum P(3) = 4.1e-05
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 869 VAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI 914
+ A E P+V NG+++ + + LYV +TRAR L++
Sbjct: 588 IHSAKGLEFPIVFLTNGSMS----NFPMDTNALYVGITRARNLLYM 629
Score = 49 (22.3 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 24/93 (25%), Positives = 38/93 (40%)
Query: 261 STPLLIVAGPGSGKGISPSNILAMTFTTAAASEMRDRIGSIVGKATAK--ELTISTFHSF 318
++ + ++AGPGSGK ++ + T I S+ KA E +S F +
Sbjct: 19 ASTIKVIAGPGSGKTLTLLYKVLHLITVENIKPEEILIFSLTNKAVDSIIENLLSIFEN- 77
Query: 319 SLQLCRSHAEKLERTSEFLIYG-HGQQRRAIIE 350
SH K E + Y HG R ++E
Sbjct: 78 ------SHTNK-EIVHQIGCYTVHGLANRIVVE 103
>UNIPROTKB|Q9KPP6 [details] [associations]
symbol:VC_2320 "Exodeoxyribonuclease V, 135 kDa subunit"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0006310 "DNA recombination" evidence=ISS] [GO:0008854
"exodeoxyribonuclease V activity" evidence=ISS] [GO:0009338
"exodeoxyribonuclease V complex" evidence=ISS] InterPro:IPR000212
InterPro:IPR004586 InterPro:IPR011604 InterPro:IPR014016
InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198
PROSITE:PS51217 GO:GO:0005524 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0006310 GO:GO:0004003
Gene3D:3.90.320.10 InterPro:IPR011335 PANTHER:PTHR11070
SUPFAM:SSF52980 HSSP:P56255 GO:GO:0009338 GO:GO:0008854 KO:K03582
OMA:CEQILVV TIGRFAMs:TIGR00609 PIR:B82091 RefSeq:NP_231951.1
ProteinModelPortal:Q9KPP6 DNASU:2613116 GeneID:2613116
KEGG:vch:VC2320 PATRIC:20083671 ProtClustDB:CLSK874758
Uniprot:Q9KPP6
Length = 1208
Score = 106 (42.4 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 480 IVDEFQDTSAMQYSLL-QILASHNR--ITIVGDDDQSIFSFNGADISGFDSFRKDFLNYK 536
++DEFQDT +QYS+ ++ + + + ++GD Q+I++F GADI + R +N
Sbjct: 383 MIDEFQDTDPLQYSIFSRLYLDYPQCGLLMIGDPKQAIYAFRGADIFTYIKARNQ-VN-A 440
Query: 537 EIRLTRNYRSTRCIVEAASSL 557
L N+RS+ +V A + +
Sbjct: 441 HYTLGTNWRSSAAMVAAVNQV 461
Score = 93 (37.8 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 41/136 (30%), Positives = 63/136 (46%)
Query: 797 VTDFLSTKFTAAKEEGNVDQDKKGCINVL-KAFIDYISERETEHFRTQRHDNENS-VTLT 854
+TD+L + +D D+ G + L +A D + QR ++E V +
Sbjct: 685 LTDYLHISELLQQATREIDSDQ-GLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV 743
Query: 855 TIHQSKGLEWDIVF---VAKANETEIPLVHEFNGAV-------NEKGTS-VEEER----- 898
TIH+SKGLE+ +VF V E+ ++ A NE+ + ++ER
Sbjct: 744 TIHKSKGLEYPLVFLPFVMSYRESSEGKYYDAESATTWVDLTGNEEALAKADQERLAEDL 803
Query: 899 RLLYVAMTRARKKLFI 914
RLLYVA+TRA FI
Sbjct: 804 RLLYVALTRAVYGCFI 819
Score = 66 (28.3 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 29/111 (26%), Positives = 50/111 (45%)
Query: 276 ISPSNILAMTFTTAAASEMRDRIGSIVGKAT------AKE-------LTISTFHSFSLQL 322
+S IL +TFT AA +E+RDRI + A A + L T H+ ++ L
Sbjct: 59 LSVDQILVVTFTEAATAELRDRIRRRLHDARLAFARGASDDPLLRSLLAEFTDHNLAVSL 118
Query: 323 CRSHAEKLERTSEFLIYGHGQQR--RAIIEAVRLLENEKILVVKRISTDML 371
S +++ + F I+G Q+ + E+ ENE + R+ ++
Sbjct: 119 LLSAERQMDEAAIFTIHGFCQRMLTQNAFESGSRFENEFVTDESRLKAQVV 169
>TIGR_CMR|VC_2320 [details] [associations]
symbol:VC_2320 "exodeoxyribonuclease V, 135 kDa subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0008854 "exodeoxyribonuclease V
activity" evidence=ISS] [GO:0009338 "exodeoxyribonuclease V
complex" evidence=ISS] InterPro:IPR000212 InterPro:IPR004586
InterPro:IPR011604 InterPro:IPR014016 InterPro:IPR014017
Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198 PROSITE:PS51217
GO:GO:0005524 GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0006281 GO:GO:0006310 GO:GO:0004003 Gene3D:3.90.320.10
InterPro:IPR011335 PANTHER:PTHR11070 SUPFAM:SSF52980 HSSP:P56255
GO:GO:0009338 GO:GO:0008854 KO:K03582 OMA:CEQILVV
TIGRFAMs:TIGR00609 PIR:B82091 RefSeq:NP_231951.1
ProteinModelPortal:Q9KPP6 DNASU:2613116 GeneID:2613116
KEGG:vch:VC2320 PATRIC:20083671 ProtClustDB:CLSK874758
Uniprot:Q9KPP6
Length = 1208
Score = 106 (42.4 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 480 IVDEFQDTSAMQYSLL-QILASHNR--ITIVGDDDQSIFSFNGADISGFDSFRKDFLNYK 536
++DEFQDT +QYS+ ++ + + + ++GD Q+I++F GADI + R +N
Sbjct: 383 MIDEFQDTDPLQYSIFSRLYLDYPQCGLLMIGDPKQAIYAFRGADIFTYIKARNQ-VN-A 440
Query: 537 EIRLTRNYRSTRCIVEAASSL 557
L N+RS+ +V A + +
Sbjct: 441 HYTLGTNWRSSAAMVAAVNQV 461
Score = 93 (37.8 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 41/136 (30%), Positives = 63/136 (46%)
Query: 797 VTDFLSTKFTAAKEEGNVDQDKKGCINVL-KAFIDYISERETEHFRTQRHDNENS-VTLT 854
+TD+L + +D D+ G + L +A D + QR ++E V +
Sbjct: 685 LTDYLHISELLQQATREIDSDQ-GLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV 743
Query: 855 TIHQSKGLEWDIVF---VAKANETEIPLVHEFNGAV-------NEKGTS-VEEER----- 898
TIH+SKGLE+ +VF V E+ ++ A NE+ + ++ER
Sbjct: 744 TIHKSKGLEYPLVFLPFVMSYRESSEGKYYDAESATTWVDLTGNEEALAKADQERLAEDL 803
Query: 899 RLLYVAMTRARKKLFI 914
RLLYVA+TRA FI
Sbjct: 804 RLLYVALTRAVYGCFI 819
Score = 66 (28.3 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 29/111 (26%), Positives = 50/111 (45%)
Query: 276 ISPSNILAMTFTTAAASEMRDRIGSIVGKAT------AKE-------LTISTFHSFSLQL 322
+S IL +TFT AA +E+RDRI + A A + L T H+ ++ L
Sbjct: 59 LSVDQILVVTFTEAATAELRDRIRRRLHDARLAFARGASDDPLLRSLLAEFTDHNLAVSL 118
Query: 323 CRSHAEKLERTSEFLIYGHGQQR--RAIIEAVRLLENEKILVVKRISTDML 371
S +++ + F I+G Q+ + E+ ENE + R+ ++
Sbjct: 119 LLSAERQMDEAAIFTIHGFCQRMLTQNAFESGSRFENEFVTDESRLKAQVV 169
>UNIPROTKB|O53348 [details] [associations]
symbol:Rv3202c "POSSIBLE ATP-DEPENDENT DNA HELICASE"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000212
InterPro:IPR014016 InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361
PROSITE:PS51198 PROSITE:PS51217 GO:GO:0005886 GO:GO:0005524
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003677
EMBL:BX842582 GO:GO:0004003 PANTHER:PTHR11070 HSSP:P56255 KO:K01529
EMBL:CP003248 PIR:H70951 RefSeq:NP_217718.1 RefSeq:NP_337825.1
RefSeq:YP_006516672.1 SMR:O53348 EnsemblBacteria:EBMYCT00000000769
EnsemblBacteria:EBMYCT00000072402 GeneID:13318018 GeneID:887574
GeneID:923284 KEGG:mtc:MT3296 KEGG:mtu:Rv3202c KEGG:mtv:RVBD_3202c
PATRIC:18129006 TubercuList:Rv3202c HOGENOM:HOG000247970
OMA:GVQEGLW ProtClustDB:CLSK872152 Uniprot:O53348
Length = 1055
Score = 116 (45.9 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 42/228 (18%), Positives = 93/228 (40%)
Query: 448 ALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIV 507
AL +L+ +++ + PE+ + + ++VD+ Q L+++LA+ + ++
Sbjct: 221 ALSAAELVGAALEAFAVDPELLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALI 280
Query: 508 -GDDDQSIFSFNGADISGF---DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVK 563
GD +Q++F F G + +G D + LT ++R + A + + +
Sbjct: 281 AGDPNQAVFGFRGGEPTGLLADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPG 340
Query: 564 RCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILE-HASNGPASICSYGSIAILYRR 622
R + ++ + + ++ + A+ A I D + H +G + +A++ R
Sbjct: 341 RSVGRRIEGTGTEVGSVTVRLAGSAHAEAAMIADALRRAHLIDG----VPWSQMAVIVRS 396
Query: 623 QVSGKVFQTAFRERKIPFNIHGVA--FYRKKVVRAIIAMLRTTLPGCD 668
A +P V + VRA++ +L T G D
Sbjct: 397 VPRAVRLPRALAAAGVPVAPPAVGGPLSAEPAVRALLTVLEATADGLD 444
Score = 98 (39.6 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 34/130 (26%), Positives = 59/130 (45%)
Query: 825 LKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE----TEIP-- 878
L+ +++++ + R + V + + H + G EWD+V +A + +P
Sbjct: 586 LRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRG 645
Query: 879 -------LVHEFNGAVNE---KGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QL 925
L+ E +G + + + EERRLL AM RAR++L + V DA +
Sbjct: 646 GVLGTQRLLDELDGVTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEA 705
Query: 926 LQPSRFLKEI 935
+ PS F EI
Sbjct: 706 VLPSAFFFEI 715
Score = 48 (22.0 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 18/77 (23%), Positives = 34/77 (44%)
Query: 261 STPLLIVAGPGSGKGISPSNILAMTFTTAAASEMRDRIGSIV------G--KATAKELTI 312
ST L+ A G G P ++L +T + R + + + G +A +E +
Sbjct: 32 STLLVEAAVAHIGAGTDPESVLLLTGSGRMGMRARSALTTALLRSRTNGPCRAAIREPVV 91
Query: 313 STFHSFSLQLCRSHAEK 329
T HS++ + R A++
Sbjct: 92 RTVHSYAYAVLRKAAQR 108
>TIGR_CMR|NSE_0467 [details] [associations]
symbol:NSE_0467 "ATP-dependent DNA helicase, UvrD/REP
family" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000212 InterPro:IPR014016 InterPro:IPR014017
Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198 PROSITE:PS51217
GO:GO:0005524 GO:GO:0003677 eggNOG:COG1074 GO:GO:0004003
PANTHER:PTHR11070 EMBL:CP000237 GenomeReviews:CP000237_GR
RefSeq:YP_506352.1 ProteinModelPortal:Q2GDU4 STRING:Q2GDU4
GeneID:3931444 KEGG:nse:NSE_0467 PATRIC:22680983
HOGENOM:HOG000127277 OMA:ISIRETI ProtClustDB:CLSK2527742
BioCyc:NSEN222891:GHFU-488-MONOMER Uniprot:Q2GDU4
Length = 907
Score = 106 (42.4 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 33/116 (28%), Positives = 64/116 (55%)
Query: 467 EVFQEYQDSWKA--IIVDEFQDTSAMQYSLLQILA-------SHNR-ITIVGDDDQSIFS 516
E++ Y+ + K I++DE QD S Q+ ++ L +HN+ I +VGD QSI+
Sbjct: 231 EIWNVYEIAAKIDHILLDEAQDNSIKQWYIISNLCRDFLIDETHNKSIFVVGDYKQSIYG 290
Query: 517 FNGAD----ISGFDSFR-KDFLN-YKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQ 566
F GA ++ +D + +D N +++ ++YRS+ I++ S+ + N++ C+
Sbjct: 291 FQGASPEMYLAFYDILKQRDPQNKLVQVKTAKSYRSSTAILQFVDSVFE-NIQLCK 345
Score = 80 (33.2 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 30/90 (33%), Positives = 42/90 (46%)
Query: 828 FIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAV 887
FI YI E + + NEN VT++T+H SKG + IVF+ +N +P +
Sbjct: 564 FI-YIFSGEDATLKI-KSKNENGVTISTVHGSKGTQSPIVFIVDSNY--VPQNRDIF-FF 618
Query: 888 NEKGTSV-EEERRLLYVAMTRARKKLFILY 916
E GT + E + V R KK I Y
Sbjct: 619 TEDGTPLLSSETHVRVVQEMRDVKKESIRY 648
Score = 73 (30.8 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 280 NILAMTFTTAAASEMRDRIGSIVGKATA 307
NIL +TFT A +EM +RI +I+GK +A
Sbjct: 40 NILCITFTKVATAEMHNRIFAILGKLSA 67
Score = 70 (29.7 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 872 ANETEIPLVHEFNGAVNEKGTSVEEER-RLLYVAMTRARKKLFIL 915
++ET + +V E E S+ E RLLYVA+TRA +L+I+
Sbjct: 627 SSETHVRVVQEMRDVKKE---SIRYEHLRLLYVALTRAEDELYIM 668
>TIGR_CMR|ECH_0387 [details] [associations]
symbol:ECH_0387 "double-strand break repair helicase AddA"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000212 InterPro:IPR014016
InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198
PROSITE:PS51217 GO:GO:0005524 GO:GO:0003677 EMBL:CP000236
GenomeReviews:CP000236_GR eggNOG:COG1074 GO:GO:0004003
PANTHER:PTHR11070 RefSeq:YP_507207.1 STRING:Q2GH76 GeneID:3927008
KEGG:ech:ECH_0387 PATRIC:20576251 HOGENOM:HOG000063502 OMA:RILCLTY
ProtClustDB:CLSK749384 BioCyc:ECHA205920:GJNR-388-MONOMER
Uniprot:Q2GH76
Length = 860
Score = 93 (37.8 bits), Expect = 3.3e-07, Sum P(4) = 3.3e-07
Identities = 32/112 (28%), Positives = 53/112 (47%)
Query: 430 EIGAAILENYNGILRSCNALDYHDLISCSVKLLS--TFPEVFQEYQDSW-KAIIVDEFQD 486
EI + Y + N LD++D+I ++ LL T+ + + DS I++DE QD
Sbjct: 316 EIAKCFTKLYQQDKQKLNYLDHNDIIDLALNLLKNPTYKDWILFHLDSKIDHILIDESQD 375
Query: 487 TSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADIS----GFDSFRKDFLN 534
S Q+S++ L H + +G ++ F DI GF + R D+ N
Sbjct: 376 NSIKQWSIILQLC-HEFFSGIGTTEELRTLFIVGDIKQSIYGFQNARPDYFN 426
Score = 75 (31.5 bits), Expect = 3.3e-07, Sum P(4) = 3.3e-07
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
IN L+AFI +I E ++ + ++ V + T+H +KG++ IVF++ + T IP
Sbjct: 706 INSLQAFIHWIKNTNPE-IKSDINLTKDYVKIMTVHNAKGMQSPIVFLS--DTTTIP 759
Score = 68 (29.0 bits), Expect = 3.3e-07, Sum P(4) = 3.3e-07
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 280 NILAMTFTTAAASEMRDRIGSIV 302
NIL +TFT AA EM +RI SI+
Sbjct: 41 NILCLTFTNTAAHEMTERIHSII 63
Score = 64 (27.6 bits), Expect = 3.3e-07, Sum P(4) = 3.3e-07
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 889 EKGTSVEEERRLLYVAMTRARKKLFILYV--MMDANW 923
+K E RLLYVAMTRA +L+I + + + +W
Sbjct: 791 QKTNEYNEYLRLLYVAMTRAEDELYITGISPIQNKSW 827
Score = 61 (26.5 bits), Expect = 0.00048, Sum P(4) = 0.00048
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 506 IVGDDDQSIFSFNGADISGFDS----FRKDFLNYKE--IRLTRNYRSTRCIVEAASSLIQ 559
IVGD QSI+ F A F+ F + YK + LT+++RST I++ +
Sbjct: 406 IVGDIKQSIYGFQNARPDYFNPMCHYFTQQSTQYKHKVLHLTQSFRSTPPILKLVDKVFN 465
Query: 560 H 560
+
Sbjct: 466 N 466
Score = 40 (19.1 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 274 KGISPSNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQL 322
K I P+NI + A E+ + + ++ L+I T HSF QL
Sbjct: 79 KDIIPTNITPKEYKRAR--ELFNNLQNV-------SLSIKTIHSFCYQL 118
>UNIPROTKB|Q83C98 [details] [associations]
symbol:CBU_1230 "ATP-dependent nuclease subunit A"
species:227377 "Coxiella burnetii RSA 493" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000212 InterPro:IPR014016
InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198
PROSITE:PS51217 GO:GO:0005524 GO:GO:0003677 GO:GO:0006281
EMBL:AE016828 GenomeReviews:AE016828_GR OMA:CEWALEL GO:GO:0004003
GO:GO:0004527 GO:GO:0090305 InterPro:IPR011335 PANTHER:PTHR11070
SUPFAM:SSF52980 HSSP:P56255 RefSeq:NP_820225.1
ProteinModelPortal:Q83C98 PRIDE:Q83C98 GeneID:1209135
KEGG:cbu:CBU_1230 PATRIC:17931197 HOGENOM:HOG000004999
ProtClustDB:CLSK914628 BioCyc:CBUR227377:GJ7S-1218-MONOMER
Uniprot:Q83C98
Length = 1110
Score = 110 (43.8 bits), Expect = 4.0e-07, Sum P(3) = 4.0e-07
Identities = 35/127 (27%), Positives = 68/127 (53%)
Query: 440 NGILRSCNALDYHDLISCSVKLL--STFPEVFQ-EYQDSWKAIIVDEFQDTSAMQYSLLQ 496
N I + NA+D+ ++ +++ L S P + + + + +++DEFQDTS +Q+ L++
Sbjct: 365 NVIFQERNAVDFTEVTLGAIRALGDSEQPSDYALQLDEQIQHLLIDEFQDTSIIQFHLIE 424
Query: 497 ILASH------NRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLT-----RNYR 545
L + + +VGD QSI+ F A++ F + + L EI+LT N+R
Sbjct: 425 KLITGWQPKDGRTLFLVGDPMQSIYRFRQAEVGLFLQVKNEGLG--EIQLTPLTLRNNFR 482
Query: 546 STRCIVE 552
S + +++
Sbjct: 483 SQKNLID 489
Score = 79 (32.9 bits), Expect = 4.0e-07, Sum P(3) = 4.0e-07
Identities = 28/90 (31%), Positives = 45/90 (50%)
Query: 246 QSLNDQQ---LEAACGDMSTPLLI---VAGPGSGKGISPSNILAMTFTTAAASEMRDRIG 299
Q+L+ QQ ++A G T LLI + + K P I+A+TFT AA+EMR+RI
Sbjct: 9 QALDPQQSFIVQAPAGSGKTELLIQRFLKLLATAK--MPEEIIAITFTRKAAAEMRERII 66
Query: 300 SIVGKATAKELTISTFHSFSLQLCRSHAEK 329
+ + +A + + + L R E+
Sbjct: 67 AALNEAQTQPAPSDSHKKLTWTLARKVIER 96
Score = 70 (29.7 bits), Expect = 4.0e-07, Sum P(3) = 4.0e-07
Identities = 46/195 (23%), Positives = 76/195 (38%)
Query: 776 GGKLLNEDNDLRSVLQY--LLADV-TDFLSTKFTAAKEE--GNVDQDKKGCINVLKAFID 830
G L+ +L + Y LL + DF + T + +D D K I ++ I
Sbjct: 698 GPACLSNSTELMNTQAYFQLLETLENDFTLERLTQKLNQLYAQIDTDAKNPIQIMT--IH 755
Query: 831 YISERETEHF------RTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFN 884
E +H + R D+ + + H G I+ KA + V+ +
Sbjct: 756 KAKGLEFDHVILPGLEKRPRSDDHDLLLWLERHTKAGNNELILAPLKAASEKADPVYNYL 815
Query: 885 GAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQL---LQPSRFLKEIPHHLRE 941
+ EK + E RLLYVA TRA++ +L + + Q L P EI + +
Sbjct: 816 KRI-EKEKTTNEITRLLYVAATRAKESFHLLTSLNKEDPQSPIKLPPKGSFAEILWPVCQ 874
Query: 942 VQAEQSVQDQHENIP 956
EQS+ + +P
Sbjct: 875 EAFEQSIIIFDDTLP 889
Score = 39 (18.8 bits), Expect = 0.00046, Sum P(3) = 0.00046
Identities = 10/66 (15%), Positives = 29/66 (43%)
Query: 951 QHENIPEGTAQFTINLPREENCCETDLVSTDFLNVQLSGAATESMELLEACNGNSFLRRF 1010
+ EN G+ ++ + + + ++ LN AT+ +++++ C + +
Sbjct: 501 KEENSHLGSISYSHSFATNNSINQKNINFYSLLNANALNEATQIVKIIQGCRSENPEKTI 560
Query: 1011 SVEDRS 1016
++ RS
Sbjct: 561 AILVRS 566
>TIGR_CMR|CBU_1230 [details] [associations]
symbol:CBU_1230 "UvrD/REP helicase family protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR000212 InterPro:IPR014016
InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198
PROSITE:PS51217 GO:GO:0005524 GO:GO:0003677 GO:GO:0006281
EMBL:AE016828 GenomeReviews:AE016828_GR OMA:CEWALEL GO:GO:0004003
GO:GO:0004527 GO:GO:0090305 InterPro:IPR011335 PANTHER:PTHR11070
SUPFAM:SSF52980 HSSP:P56255 RefSeq:NP_820225.1
ProteinModelPortal:Q83C98 PRIDE:Q83C98 GeneID:1209135
KEGG:cbu:CBU_1230 PATRIC:17931197 HOGENOM:HOG000004999
ProtClustDB:CLSK914628 BioCyc:CBUR227377:GJ7S-1218-MONOMER
Uniprot:Q83C98
Length = 1110
Score = 110 (43.8 bits), Expect = 4.0e-07, Sum P(3) = 4.0e-07
Identities = 35/127 (27%), Positives = 68/127 (53%)
Query: 440 NGILRSCNALDYHDLISCSVKLL--STFPEVFQ-EYQDSWKAIIVDEFQDTSAMQYSLLQ 496
N I + NA+D+ ++ +++ L S P + + + + +++DEFQDTS +Q+ L++
Sbjct: 365 NVIFQERNAVDFTEVTLGAIRALGDSEQPSDYALQLDEQIQHLLIDEFQDTSIIQFHLIE 424
Query: 497 ILASH------NRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLT-----RNYR 545
L + + +VGD QSI+ F A++ F + + L EI+LT N+R
Sbjct: 425 KLITGWQPKDGRTLFLVGDPMQSIYRFRQAEVGLFLQVKNEGLG--EIQLTPLTLRNNFR 482
Query: 546 STRCIVE 552
S + +++
Sbjct: 483 SQKNLID 489
Score = 79 (32.9 bits), Expect = 4.0e-07, Sum P(3) = 4.0e-07
Identities = 28/90 (31%), Positives = 45/90 (50%)
Query: 246 QSLNDQQ---LEAACGDMSTPLLI---VAGPGSGKGISPSNILAMTFTTAAASEMRDRIG 299
Q+L+ QQ ++A G T LLI + + K P I+A+TFT AA+EMR+RI
Sbjct: 9 QALDPQQSFIVQAPAGSGKTELLIQRFLKLLATAK--MPEEIIAITFTRKAAAEMRERII 66
Query: 300 SIVGKATAKELTISTFHSFSLQLCRSHAEK 329
+ + +A + + + L R E+
Sbjct: 67 AALNEAQTQPAPSDSHKKLTWTLARKVIER 96
Score = 70 (29.7 bits), Expect = 4.0e-07, Sum P(3) = 4.0e-07
Identities = 46/195 (23%), Positives = 76/195 (38%)
Query: 776 GGKLLNEDNDLRSVLQY--LLADV-TDFLSTKFTAAKEE--GNVDQDKKGCINVLKAFID 830
G L+ +L + Y LL + DF + T + +D D K I ++ I
Sbjct: 698 GPACLSNSTELMNTQAYFQLLETLENDFTLERLTQKLNQLYAQIDTDAKNPIQIMT--IH 755
Query: 831 YISERETEHF------RTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFN 884
E +H + R D+ + + H G I+ KA + V+ +
Sbjct: 756 KAKGLEFDHVILPGLEKRPRSDDHDLLLWLERHTKAGNNELILAPLKAASEKADPVYNYL 815
Query: 885 GAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQL---LQPSRFLKEIPHHLRE 941
+ EK + E RLLYVA TRA++ +L + + Q L P EI + +
Sbjct: 816 KRI-EKEKTTNEITRLLYVAATRAKESFHLLTSLNKEDPQSPIKLPPKGSFAEILWPVCQ 874
Query: 942 VQAEQSVQDQHENIP 956
EQS+ + +P
Sbjct: 875 EAFEQSIIIFDDTLP 889
Score = 39 (18.8 bits), Expect = 0.00046, Sum P(3) = 0.00046
Identities = 10/66 (15%), Positives = 29/66 (43%)
Query: 951 QHENIPEGTAQFTINLPREENCCETDLVSTDFLNVQLSGAATESMELLEACNGNSFLRRF 1010
+ EN G+ ++ + + + ++ LN AT+ +++++ C + +
Sbjct: 501 KEENSHLGSISYSHSFATNNSINQKNINFYSLLNANALNEATQIVKIIQGCRSENPEKTI 560
Query: 1011 SVEDRS 1016
++ RS
Sbjct: 561 AILVRS 566
>TIGR_CMR|SO_2148 [details] [associations]
symbol:SO_2148 "exodeoxyribonuclease V, beta subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0008854 "exodeoxyribonuclease V
activity" evidence=ISS] [GO:0009338 "exodeoxyribonuclease V
complex" evidence=ISS] InterPro:IPR000212 InterPro:IPR004586
InterPro:IPR011604 InterPro:IPR014016 InterPro:IPR014017
Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198 PROSITE:PS51217
GO:GO:0005524 GO:GO:0003677 GO:GO:0006281 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0004003 GO:GO:0090305
Gene3D:3.90.320.10 InterPro:IPR011335 PANTHER:PTHR11070
SUPFAM:SSF52980 HSSP:P56255 GO:GO:0008854 HOGENOM:HOG000258330
KO:K03582 OMA:CEQILVV TIGRFAMs:TIGR00609 RefSeq:NP_717749.2
ProteinModelPortal:Q8EF45 GeneID:1169889 KEGG:son:SO_2148
PATRIC:23523916 ProtClustDB:CLSK906610 Uniprot:Q8EF45
Length = 1266
Score = 81 (33.6 bits), Expect = 1.2e-06, Sum P(6) = 1.2e-06
Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 504 ITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLI-QH-N 561
+ ++GD Q+I++F GADI + R+ L NYRS+R +V + L QH N
Sbjct: 437 LLMIGDPKQAIYAFRGADIYTYIEARRQ--TQAHYFLDTNYRSSRNLVAGVNHLFAQHPN 494
Query: 562 VKRCQ---LKNVQTDNSHGSKIIIKECHNEDA 590
Q V+T S +K +++ N A
Sbjct: 495 PFISQSIPFDRVKTPASAAAKQLVESTANSAA 526
Score = 75 (31.5 bits), Expect = 1.2e-06, Sum P(6) = 1.2e-06
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 264 LLIVAGPGSGKGISPSNILAMTFTTAAASEMRDRI 298
L ++ G G + +S IL +TFT AA E+RDRI
Sbjct: 49 LRLLLGDGLSEPLSCEQILVVTFTNAATEELRDRI 83
Score = 69 (29.3 bits), Expect = 1.2e-06, Sum P(6) = 1.2e-06
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 832 ISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFV 869
I T+ + + +N V + TIH+SKGLE+ + F+
Sbjct: 758 IDNTGTDEQQLRLESEQNLVQIVTIHKSKGLEYPVCFI 795
Score = 57 (25.1 bits), Expect = 1.2e-06, Sum P(6) = 1.2e-06
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 447 NALDYHDLISCSVKLLSTFPEVFQEYQDS-WKAIIVDEFQDTSAMQYSL 494
N L DL++ + P+ + S + ++DEFQDT +Q+++
Sbjct: 358 NVLTPDDLLTTLAAAMLANPDTLPKAVASRFPVALIDEFQDTDPLQFAI 406
Score = 54 (24.1 bits), Expect = 0.00037, Sum P(6) = 0.00037
Identities = 26/92 (28%), Positives = 42/92 (45%)
Query: 553 AASSLIQH--NVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNG---- 606
AA L++ N +LK ++ + +K ++ ED A I ++L A+NG
Sbjct: 513 AAKQLVESTANSAALRLKLLREGETGLNKASARQTLAEDT--AAEITRLLTEAANGQCHT 570
Query: 607 PASICSYGSIAILYRRQVSGKVFQTAFRERKI 638
P IAIL R + V +TA +R+I
Sbjct: 571 PKGPLIAKDIAILVRDRNEAAVMKTALSKRQI 602
Score = 53 (23.7 bits), Expect = 1.2e-06, Sum P(6) = 1.2e-06
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 327 AEKLERTSEFLIYGHGQQRRAIIEAVRLLE 356
AE ++ F+ +GHG ++EA+ L E
Sbjct: 274 AEMFDQLDNFIAFGHGLPPLKVLEALSLSE 303
Score = 49 (22.3 bits), Expect = 1.2e-06, Sum P(6) = 1.2e-06
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 890 KGTSVEEERRLLYVAMTRARKKLFILYV 917
K ++ E+ RLLYVA+TR L LY+
Sbjct: 839 KQETLAEDLRLLYVALTRP-VYLCYLYI 865
>TIGR_CMR|SPO_3873 [details] [associations]
symbol:SPO_3873 "ATP-dependent DNA helicase, UvrD/Rep
family" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006268
"DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000212 InterPro:IPR014016 InterPro:IPR014017
Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198 PROSITE:PS51217
GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0004003 GO:GO:0004527 GO:GO:0090305
InterPro:IPR011335 PANTHER:PTHR11070 SUPFAM:SSF52980 OMA:RILCLTY
RefSeq:YP_169061.1 ProteinModelPortal:Q5LLP9 GeneID:3196426
KEGG:sil:SPO3873 PATRIC:23381251 HOGENOM:HOG000143994
ProtClustDB:CLSK934308 InterPro:IPR014151 TIGRFAMs:TIGR02784
Uniprot:Q5LLP9
Length = 1118
Score = 108 (43.1 bits), Expect = 2.1e-06, Sum P(4) = 2.1e-06
Identities = 46/143 (32%), Positives = 69/143 (48%)
Query: 433 AAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV--FQEYQ-DSW-KAIIVDEFQDTS 488
A L Y+ + LD+ DLI + +LL T P V + Y+ D I+VDE QDTS
Sbjct: 340 AVFLPEYDRRKQLRGWLDFDDLILKARQLL-TDPSVAAWVLYRLDGGIDHILVDEAQDTS 398
Query: 489 AMQYSLLQILASH------------NRITIVGDDDQSIFSFNGADISGFDSFRKDF---- 532
Q+ +++ LA I +VGD QSI+SF GAD FD + +F
Sbjct: 399 PEQWDVIEKLAQEFTSGEGARSGVERTIFVVGDKKQSIYSFQGADPDAFDRMQGEFGRKL 458
Query: 533 ----LNYKEIRLTRNYRSTRCIV 551
N +++ L ++RS+ I+
Sbjct: 459 RDSGSNLEDLTLEFSFRSSSAIL 481
Score = 79 (32.9 bits), Expect = 2.1e-06, Sum P(4) = 2.1e-06
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 250 DQQLEAACGDMSTPLLIVAGPGSGK------------GISPSNILAMTFTTAAASEMRDR 297
++Q++AA D ST L AG G K + P +IL +T+T AAASEM++R
Sbjct: 9 ERQVQAARPDTSTWLAANAGSGKTKVLTDRVARLLLSDVQPQHILCLTYTKAAASEMQNR 68
Query: 298 IGSIVGK 304
+ +G+
Sbjct: 69 LFKRLGE 75
Score = 57 (25.1 bits), Expect = 2.1e-06, Sum P(4) = 2.1e-06
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 894 VEEERRLLYVAMTRARKKLFI 914
+ E RLLYVA+TRA K L +
Sbjct: 836 MNERLRLLYVALTRAEKWLIV 856
Score = 52 (23.4 bits), Expect = 2.1e-06, Sum P(4) = 2.1e-06
Identities = 23/101 (22%), Positives = 42/101 (41%)
Query: 778 KLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERET 837
++L + R +L L A+ D ++ + A D I L F+ ++ +
Sbjct: 706 RILTRHDGRRKLLGRLGAEAEDGINALLSQALAYERSD------IPSLTGFLVWMQTDDL 759
Query: 838 EHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
E + Q + + + T+H SKGLE IV + + P
Sbjct: 760 E-IKRQMTGVGDMIRVMTVHGSKGLEAPIVILPDTAQRRAP 799
>UNIPROTKB|Q4K7K2 [details] [associations]
symbol:PFL_4698 "Uncharacterized protein" species:220664
"Pseudomonas protegens Pf-5" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000212
InterPro:IPR014016 InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361
PROSITE:PS51198 GO:GO:0005524 GO:GO:0003677 EMBL:CP000076
GenomeReviews:CP000076_GR GO:GO:0004003 PANTHER:PTHR11070
eggNOG:COG0210 OMA:QLYRFRG RefSeq:YP_261781.1
ProteinModelPortal:Q4K7K2 STRING:Q4K7K2 GeneID:3479117
KEGG:pfl:PFL_4698 PATRIC:19878828 HOGENOM:HOG000040837
ProtClustDB:CLSK912629 BioCyc:PFLU220664:GIX8-4736-MONOMER
Uniprot:Q4K7K2
Length = 486
Score = 110 (43.8 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
Identities = 40/123 (32%), Positives = 62/123 (50%)
Query: 793 LLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDN-ENSV 851
LL D D+ ++T E D + I ++ A+ D + R E + D + ++
Sbjct: 356 LLRDYRDY--QQYTEIAEVSQ-DSEMLRSIKIISAYPD-LPSRILELRKLTTEDELDATI 411
Query: 852 TLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKK 911
TLTT H++KGLEWD V + + T PL + + G ++E L+YVA+TRA K
Sbjct: 412 TLTTGHKAKGLEWDYVCLYD-DFTADPLSPDL-----DPGRR-DDELNLIYVAVTRAMKI 464
Query: 912 LFI 914
L I
Sbjct: 465 LAI 467
Score = 79 (32.9 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
Identities = 33/132 (25%), Positives = 69/132 (52%)
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGF 525
P++ Q + DS +++DE QD + + +++ L +I +VGD Q ++ F GA+
Sbjct: 185 PDLSQRF-DS---VLLDEGQDINPVIADIVR-LQRIQKI-LVGDPHQQLYRFRGAE---- 234
Query: 526 DSFRKDFL-NYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
D+ D++ +E LT+++R I A+ ++ + + +L+ + G++ ++K+
Sbjct: 235 DTLDSDWMAGAEEHYLTQSWRFGPAIAHVANIILSYKGETRKLQGL------GAQTLVKK 288
Query: 585 CHNEDA-QCAFI 595
ED AFI
Sbjct: 289 ALPEDLPHRAFI 300
>UNIPROTKB|P08394 [details] [associations]
symbol:recB species:83333 "Escherichia coli K-12"
[GO:0005524 "ATP binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0090305 "nucleic acid phosphodiester
bond hydrolysis" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0009338 "exodeoxyribonuclease V complex"
evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP;IDA] [GO:0004519 "endonuclease activity"
evidence=IEA;IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA;IDA] [GO:0008854 "exodeoxyribonuclease V activity"
evidence=IEA;IMP] [GO:0006310 "DNA recombination" evidence=IMP]
InterPro:IPR000212 InterPro:IPR004586 InterPro:IPR011604
InterPro:IPR014016 InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361
PROSITE:PS51198 PROSITE:PS51217 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 EMBL:U29581 GO:GO:0006310 eggNOG:COG1074
GO:GO:0004003 GO:GO:0006302 Gene3D:3.90.320.10 InterPro:IPR011335
PANTHER:PTHR11070 SUPFAM:SSF52980 GO:GO:0004519 EMBL:X04582
EMBL:X04581 PDB:1W36 PDB:3K70 PDBsum:1W36 PDBsum:3K70 GO:GO:0009338
GO:GO:0008854 EMBL:AF179304 EMBL:X06227 PIR:A25532
RefSeq:NP_417297.1 RefSeq:YP_491025.1 ProteinModelPortal:P08394
DIP:DIP-540N IntAct:P08394 MINT:MINT-1224378 PRIDE:P08394
EnsemblBacteria:EBESCT00000004647 EnsemblBacteria:EBESCT00000016667
GeneID:12933313 GeneID:947286 KEGG:ecj:Y75_p2754 KEGG:eco:b2820
PATRIC:32121058 EchoBASE:EB0817 EcoGene:EG10824
HOGENOM:HOG000258330 KO:K03582 OMA:CEQILVV ProtClustDB:PRK10876
BioCyc:EcoCyc:EG10824-MONOMER BioCyc:ECOL316407:JW2788-MONOMER
BioCyc:MetaCyc:EG10824-MONOMER ChEMBL:CHEMBL1741169
EvolutionaryTrace:P08394 Genevestigator:P08394 TIGRFAMs:TIGR00609
Uniprot:P08394
Length = 1180
Score = 110 (43.8 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 33/114 (28%), Positives = 55/114 (48%)
Query: 449 LDYHDLIS-CSVKLLSTFPEVFQE-YQDSWKAIIVDEFQDTSAMQYSLLQILASHNRIT- 505
L + D++S L S EV + + ++DEFQDT QY + + + H T
Sbjct: 349 LGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA 408
Query: 506 --IVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSL 557
++GD Q+I++F GADI + R + + L N+RS +V + + L
Sbjct: 409 LLLIGDPKQAIYAFRGADIFTYMKARSEV--HAHYTLDTNWRSAPGMVNSVNKL 460
Score = 75 (31.5 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 35/129 (27%), Positives = 58/129 (44%)
Query: 797 VTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFI-DYISERETEHFRTQRHDNENSVTLTT 855
+TD L +E G + + + L I + S ++ R + +++ V + T
Sbjct: 684 LTDILHIS-ELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLE--SDKHLVQIVT 740
Query: 856 IHQSKGLEWDIV---FVAKANETEIPLVHE---FNGAV--NEKGTSVE--------EERR 899
IH+SKGLE+ +V F+ E H+ F + N SV+ E+ R
Sbjct: 741 IHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLR 800
Query: 900 LLYVAMTRA 908
LLYVA+TR+
Sbjct: 801 LLYVALTRS 809
Score = 59 (25.8 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 24/126 (19%), Positives = 55/126 (43%)
Query: 226 TDTIQTIKTQNMPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSG--KGISPSNILA 283
+D +T+ +P + + +++ + LL+ G + + ++ +L
Sbjct: 2 SDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLV 61
Query: 284 MTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQ 343
+TFT AA +E+R RI S + + L +T + +L +K + +++L+ Q
Sbjct: 62 VTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQ-AAQWLLLAERQ 120
Query: 344 QRRAII 349
A +
Sbjct: 121 MDEAAV 126
>CGD|CAL0000942 [details] [associations]
symbol:HMI1 species:5476 "Candida albicans" [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IGI;ISS;IDA]
[GO:0000002 "mitochondrial genome maintenance" evidence=IMP]
[GO:0005759 "mitochondrial matrix" evidence=IGI;ISS] [GO:0032042
"mitochondrial DNA metabolic process" evidence=IEA]
InterPro:IPR000212 InterPro:IPR014016 InterPro:IPR014017
Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198 PROSITE:PS51217
CGD:CAL0000942 GO:GO:0005524 GO:GO:0005759 GO:GO:0003677
GO:GO:0000002 PANTHER:PTHR11070 EMBL:AACQ01000032 GO:GO:0043140
eggNOG:COG0210 RefSeq:XP_719420.1 ProteinModelPortal:Q5ACI1
GeneID:3638997 KEGG:cal:CaO19.7661 HOGENOM:HOG000094564
Uniprot:Q5ACI1
Length = 637
Score = 118 (46.6 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 58/248 (23%), Positives = 105/248 (42%)
Query: 259 DMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASEMRDRIGSIVGK 304
D T L I AGPG+GK G+ P +I+ ++ T + +R + +G
Sbjct: 16 DPQTVLSIQAGPGTGKTFALIKRIQKLIADGVPPQSIVVLSLTNRTVNSLRSALSEYIGG 75
Query: 305 ATAKELTISTFHSFSLQLCRSHAEKL--ERTSEFLIYGHG-QQRRAII---EAVRLLENE 358
T ++ I TFHSF+ L S+ ++ E+ + L+ Q R + +V+ L E
Sbjct: 76 DTG-DVVIKTFHSFAFDLIESNLQEYFPEKGRQMLLDDISFQNYRTLFMTGNSVKQLHLE 134
Query: 359 KILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDVAKAS- 417
K L R D+ +G ++ L + F + + + +Y+ F RD +++ S
Sbjct: 135 KALSEVREGKDVANVAEKYGISQSDLH--ETIKFLNDNG--MIRYSDFIRDAIELLDVSK 190
Query: 418 GKTPAEFRK-IGDEIGAAILENYNGILRSCNALDYH-----DLISCSVKLLSTFPEVFQE 471
G+ + R I DE + I + + H D C + L + P++ Q+
Sbjct: 191 GEIVKDIRVLIIDEFQDMQPQLVTFIEKLVEGGNKHITLAGDSNQCIYEFLGSSPDITQK 250
Query: 472 YQDS--WK 477
+ S W+
Sbjct: 251 FVSSLGWE 258
Score = 102 (41.0 bits), Expect = 0.00059, Sum P(3) = 0.00059
Identities = 47/178 (26%), Positives = 79/178 (44%)
Query: 391 LFFSMSSFKLCQYNKF--E-RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCN 447
LF + +S K K E R+G DVA + K + + I L N NG++R
Sbjct: 121 LFMTGNSVKQLHLEKALSEVREGKDVANVAEKYGISQSDLHETI--KFL-NDNGMIR--- 174
Query: 448 ALDYHDLISCSVKLLSTFP-EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS--HNRI 504
Y D I +++LL E+ ++ + +I+DEFQD + ++ L + I
Sbjct: 175 ---YSDFIRDAIELLDVSKGEIVKDI----RVLIIDEFQDMQPQLVTFIEKLVEGGNKHI 227
Query: 505 TIVGDDDQSIFSFNGADISGFDSFRKDF-LNYKEIRLTRNYRSTRCIVEAASSLIQHN 561
T+ GD +Q I+ F G+ F +EI L ++R T + ++ +I N
Sbjct: 228 TLAGDSNQCIYEFLGSSPDITQKFVSSLGWETEEICLNESFRLTPENLHISNMVIDQN 285
Score = 75 (31.5 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 34/138 (24%), Positives = 69/138 (50%)
Query: 778 KLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK-GCINVLKAFIDYIS--E 834
K L + + S L ++ + TD ++ + G+ DQ+ + +N L +F + +S
Sbjct: 457 KNLGDAVSIMSSLARIVRE-TDIIT--YLNKPSRGHKDQENEIKLVNNLTSFYESLSLSY 513
Query: 835 RET---EHFRTQRHDNE-----NSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGA 886
++T ++F ++E S+ ++T+H++KGLE+ +VFV T P + G+
Sbjct: 514 KKTPSLDYFLNNYPEDEPVLEERSINVSTVHKAKGLEFPVVFV-----TNFP---GYFGS 565
Query: 887 VNEK--GTSVEEERRLLY 902
NE+ ++ + LLY
Sbjct: 566 ANERLLYVALTRAKNLLY 583
Score = 42 (19.8 bits), Expect = 0.00059, Sum P(3) = 0.00059
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 75 VPLAEIPVSTPSLQTINGVKSVVGEFSG 102
VP I V + + +T+N ++S + E+ G
Sbjct: 47 VPPQSIVVLSLTNRTVNSLRSALSEYIG 74
Score = 40 (19.1 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 485 QDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFN 518
Q +++S ILAS NR + + + + F FN
Sbjct: 322 QSGGLLKFSDFMILASQNREVDSISEFMTNHFGFN 356
>UNIPROTKB|Q5ACI1 [details] [associations]
symbol:HMI1 "Putative uncharacterized protein HMI1"
species:237561 "Candida albicans SC5314" [GO:0000002 "mitochondrial
genome maintenance" evidence=IMP] [GO:0005759 "mitochondrial
matrix" evidence=IGI] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IGI;IDA] InterPro:IPR000212 InterPro:IPR014016
InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198
PROSITE:PS51217 CGD:CAL0000942 GO:GO:0005524 GO:GO:0005759
GO:GO:0003677 GO:GO:0000002 PANTHER:PTHR11070 EMBL:AACQ01000032
GO:GO:0043140 eggNOG:COG0210 RefSeq:XP_719420.1
ProteinModelPortal:Q5ACI1 GeneID:3638997 KEGG:cal:CaO19.7661
HOGENOM:HOG000094564 Uniprot:Q5ACI1
Length = 637
Score = 118 (46.6 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 58/248 (23%), Positives = 105/248 (42%)
Query: 259 DMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASEMRDRIGSIVGK 304
D T L I AGPG+GK G+ P +I+ ++ T + +R + +G
Sbjct: 16 DPQTVLSIQAGPGTGKTFALIKRIQKLIADGVPPQSIVVLSLTNRTVNSLRSALSEYIGG 75
Query: 305 ATAKELTISTFHSFSLQLCRSHAEKL--ERTSEFLIYGHG-QQRRAII---EAVRLLENE 358
T ++ I TFHSF+ L S+ ++ E+ + L+ Q R + +V+ L E
Sbjct: 76 DTG-DVVIKTFHSFAFDLIESNLQEYFPEKGRQMLLDDISFQNYRTLFMTGNSVKQLHLE 134
Query: 359 KILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDVAKAS- 417
K L R D+ +G ++ L + F + + + +Y+ F RD +++ S
Sbjct: 135 KALSEVREGKDVANVAEKYGISQSDLH--ETIKFLNDNG--MIRYSDFIRDAIELLDVSK 190
Query: 418 GKTPAEFRK-IGDEIGAAILENYNGILRSCNALDYH-----DLISCSVKLLSTFPEVFQE 471
G+ + R I DE + I + + H D C + L + P++ Q+
Sbjct: 191 GEIVKDIRVLIIDEFQDMQPQLVTFIEKLVEGGNKHITLAGDSNQCIYEFLGSSPDITQK 250
Query: 472 YQDS--WK 477
+ S W+
Sbjct: 251 FVSSLGWE 258
Score = 102 (41.0 bits), Expect = 0.00059, Sum P(3) = 0.00059
Identities = 47/178 (26%), Positives = 79/178 (44%)
Query: 391 LFFSMSSFKLCQYNKF--E-RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCN 447
LF + +S K K E R+G DVA + K + + I L N NG++R
Sbjct: 121 LFMTGNSVKQLHLEKALSEVREGKDVANVAEKYGISQSDLHETI--KFL-NDNGMIR--- 174
Query: 448 ALDYHDLISCSVKLLSTFP-EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS--HNRI 504
Y D I +++LL E+ ++ + +I+DEFQD + ++ L + I
Sbjct: 175 ---YSDFIRDAIELLDVSKGEIVKDI----RVLIIDEFQDMQPQLVTFIEKLVEGGNKHI 227
Query: 505 TIVGDDDQSIFSFNGADISGFDSFRKDF-LNYKEIRLTRNYRSTRCIVEAASSLIQHN 561
T+ GD +Q I+ F G+ F +EI L ++R T + ++ +I N
Sbjct: 228 TLAGDSNQCIYEFLGSSPDITQKFVSSLGWETEEICLNESFRLTPENLHISNMVIDQN 285
Score = 75 (31.5 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 34/138 (24%), Positives = 69/138 (50%)
Query: 778 KLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK-GCINVLKAFIDYIS--E 834
K L + + S L ++ + TD ++ + G+ DQ+ + +N L +F + +S
Sbjct: 457 KNLGDAVSIMSSLARIVRE-TDIIT--YLNKPSRGHKDQENEIKLVNNLTSFYESLSLSY 513
Query: 835 RET---EHFRTQRHDNE-----NSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGA 886
++T ++F ++E S+ ++T+H++KGLE+ +VFV T P + G+
Sbjct: 514 KKTPSLDYFLNNYPEDEPVLEERSINVSTVHKAKGLEFPVVFV-----TNFP---GYFGS 565
Query: 887 VNEK--GTSVEEERRLLY 902
NE+ ++ + LLY
Sbjct: 566 ANERLLYVALTRAKNLLY 583
Score = 42 (19.8 bits), Expect = 0.00059, Sum P(3) = 0.00059
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 75 VPLAEIPVSTPSLQTINGVKSVVGEFSG 102
VP I V + + +T+N ++S + E+ G
Sbjct: 47 VPPQSIVVLSLTNRTVNSLRSALSEYIG 74
Score = 40 (19.1 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 485 QDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFN 518
Q +++S ILAS NR + + + + F FN
Sbjct: 322 QSGGLLKFSDFMILASQNREVDSISEFMTNHFGFN 356
>UNIPROTKB|Q81PJ0 [details] [associations]
symbol:BAS2623 "UvrD/Rep helicase family protein"
species:1392 "Bacillus anthracis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000212 InterPro:IPR014016 Pfam:PF00580 PROSITE:PS51198
GO:GO:0005524 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0004003
PANTHER:PTHR11070 KO:K03657 RefSeq:NP_845161.1 RefSeq:YP_019456.1
RefSeq:YP_028882.1 ProteinModelPortal:Q81PJ0 IntAct:Q81PJ0
DNASU:1085725 EnsemblBacteria:EBBACT00000009516
EnsemblBacteria:EBBACT00000018796 EnsemblBacteria:EBBACT00000022593
GeneID:1085725 GeneID:2815230 GeneID:2852989 KEGG:ban:BA_2814
KEGG:bar:GBAA_2814 KEGG:bat:BAS2623 HOGENOM:HOG000055719
OMA:TFPDWAL ProtClustDB:CLSK918106
BioCyc:BANT260799:GJAJ-2687-MONOMER
BioCyc:BANT261594:GJ7F-2782-MONOMER Uniprot:Q81PJ0
Length = 689
Score = 132 (51.5 bits), Expect = 3.7e-05, Sum P(3) = 3.7e-05
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 479 IIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEI 538
+++DE QD S Q +L+ + N TI+GD Q+I+ + G I + +F++ F
Sbjct: 466 VVIDEAQDFSPFQVYVLKEITLGNSFTILGDLSQAIYDYQG--IEDWSAFKEVFQETGYY 523
Query: 539 RLTRNYRSTRCIVEAASSLIQH 560
LTR+YRST+ I+E A+ +I++
Sbjct: 524 ELTRSYRSTKEIIEFANEIIKN 545
Score = 54 (24.1 bits), Expect = 3.7e-05, Sum P(3) = 3.7e-05
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 848 ENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTR 907
E +++ ++ +KGLE+D V + +E K T + + +LLYV TR
Sbjct: 625 EGGISVVPVYLAKGLEFDAVLLIDVDEEHY------------KNT--KHDAKLLYVGCTR 670
Query: 908 ARKKLFILY 916
+ L+I +
Sbjct: 671 SLHDLWIFH 679
Score = 45 (20.9 bits), Expect = 3.7e-05, Sum P(3) = 3.7e-05
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 235 QNMPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK 274
+N ++ + ++ +Q + + + PLLI GSGK
Sbjct: 169 ENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGK 208
>TIGR_CMR|BA_2814 [details] [associations]
symbol:BA_2814 "uvrD/Rep helicase family protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000212 InterPro:IPR014016 Pfam:PF00580
PROSITE:PS51198 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0004003
PANTHER:PTHR11070 KO:K03657 RefSeq:NP_845161.1 RefSeq:YP_019456.1
RefSeq:YP_028882.1 ProteinModelPortal:Q81PJ0 IntAct:Q81PJ0
DNASU:1085725 EnsemblBacteria:EBBACT00000009516
EnsemblBacteria:EBBACT00000018796 EnsemblBacteria:EBBACT00000022593
GeneID:1085725 GeneID:2815230 GeneID:2852989 KEGG:ban:BA_2814
KEGG:bar:GBAA_2814 KEGG:bat:BAS2623 HOGENOM:HOG000055719
OMA:TFPDWAL ProtClustDB:CLSK918106
BioCyc:BANT260799:GJAJ-2687-MONOMER
BioCyc:BANT261594:GJ7F-2782-MONOMER Uniprot:Q81PJ0
Length = 689
Score = 132 (51.5 bits), Expect = 3.7e-05, Sum P(3) = 3.7e-05
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 479 IIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEI 538
+++DE QD S Q +L+ + N TI+GD Q+I+ + G I + +F++ F
Sbjct: 466 VVIDEAQDFSPFQVYVLKEITLGNSFTILGDLSQAIYDYQG--IEDWSAFKEVFQETGYY 523
Query: 539 RLTRNYRSTRCIVEAASSLIQH 560
LTR+YRST+ I+E A+ +I++
Sbjct: 524 ELTRSYRSTKEIIEFANEIIKN 545
Score = 54 (24.1 bits), Expect = 3.7e-05, Sum P(3) = 3.7e-05
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 848 ENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTR 907
E +++ ++ +KGLE+D V + +E K T + + +LLYV TR
Sbjct: 625 EGGISVVPVYLAKGLEFDAVLLIDVDEEHY------------KNT--KHDAKLLYVGCTR 670
Query: 908 ARKKLFILY 916
+ L+I +
Sbjct: 671 SLHDLWIFH 679
Score = 45 (20.9 bits), Expect = 3.7e-05, Sum P(3) = 3.7e-05
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 235 QNMPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK 274
+N ++ + ++ +Q + + + PLLI GSGK
Sbjct: 169 ENKDNKLKDIVSTIQSEQNDIIRAERNLPLLIQGVAGSGK 208
>TIGR_CMR|BA_1040 [details] [associations]
symbol:BA_1040 "helicase, UvrD/Rep family" species:198094
"Bacillus anthracis str. Ames" [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISS] [GO:0006259 "DNA metabolic
process" evidence=ISS] InterPro:IPR000212 InterPro:IPR014016
Pfam:PF00580 PROSITE:PS51198 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0004003 PANTHER:PTHR11070 KO:K03657 RefSeq:NP_843540.1
RefSeq:YP_017667.1 RefSeq:YP_027246.1 ProteinModelPortal:Q81U46
IntAct:Q81U46 EnsemblBacteria:EBBACT00000008558
EnsemblBacteria:EBBACT00000013536 EnsemblBacteria:EBBACT00000023531
GeneID:1088968 GeneID:2815643 GeneID:2849404 KEGG:ban:BA_1040
KEGG:bar:GBAA_1040 KEGG:bat:BAS0973 HOGENOM:HOG000040246
OMA:SPTYKTR ProtClustDB:CLSK887875
BioCyc:BANT260799:GJAJ-1050-MONOMER
BioCyc:BANT261594:GJ7F-1097-MONOMER Uniprot:Q81U46
Length = 776
Score = 140 (54.3 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 47/145 (32%), Positives = 72/145 (49%)
Query: 461 LLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGA 520
LL E FQ + S K ++VDE QD S Q+ L+ L R+T++GD +Q+IF+ + +
Sbjct: 525 LLKELIEGFQTNR-SIKHVLVDEAQDYSPFQFEFLKRLFPAARMTVLGDFNQAIFA-HAS 582
Query: 521 DISGFDS----FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSH 576
+ FD+ + D N I LTR+YRST+ I+E +L+ KN+
Sbjct: 583 ETVNFDTLTNLYGPDETN--GINLTRSYRSTKPIIEFTRALVPEG------KNIHAFERD 634
Query: 577 GSKIIIKECHNEDAQCAFIIDKILE 601
G K + + NE I K+ E
Sbjct: 635 GEKPTVTKVANESELHERITAKVAE 659
Score = 47 (21.6 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 848 ENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTR 907
E + + + +KG+E+D V + A++ N+ E RRL Y A TR
Sbjct: 702 EQGIVVIPAYLAKGIEFDAVIIYDASKD----------VYND-----ESVRRLFYTACTR 746
Query: 908 ARKKL 912
A +L
Sbjct: 747 AMHEL 751
>UNIPROTKB|P96920 [details] [associations]
symbol:recB "Exodeoxyribonuclease V beta chain"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000212
InterPro:IPR004586 InterPro:IPR011604 InterPro:IPR014016
InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198
PROSITE:PS51217 GO:GO:0005829 GO:GO:0005886 GO:GO:0005524
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0006281 EMBL:BX842574
eggNOG:COG1074 GO:GO:0004003 GO:GO:0090305 Gene3D:3.90.320.10
InterPro:IPR011335 PANTHER:PTHR11070 SUPFAM:SSF52980 GO:GO:0004519
GO:GO:0008854 HOGENOM:HOG000258330 KO:K03582 OMA:CEQILVV
TIGRFAMs:TIGR00609 PIR:C70612 RefSeq:NP_215144.1 RefSeq:NP_335068.1
RefSeq:YP_006513969.1 ProteinModelPortal:P96920 SMR:P96920
EnsemblBacteria:EBMYCT00000003009 EnsemblBacteria:EBMYCT00000070478
GeneID:13318511 GeneID:888004 GeneID:925060 KEGG:mtc:MT0658
KEGG:mtu:Rv0630c KEGG:mtv:RVBD_0630c PATRIC:18123161
TubercuList:Rv0630c ProtClustDB:CLSK790645 Uniprot:P96920
Length = 1094
Score = 141 (54.7 bits), Expect = 4.6e-05, Sum P(4) = 4.6e-05
Identities = 37/126 (29%), Positives = 65/126 (51%)
Query: 436 LENYNGILRSCNALDYHDL-ISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSL 494
LE G LR A ++DL I + L + ++ W+ ++VDEFQDT MQ+ +
Sbjct: 218 LERRKGRLR---AQGFNDLLIRLATALEAADSPARDRMRERWRIVLVDEFQDTDPMQWRV 274
Query: 495 LQ-ILASHNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEA 553
L+ + H+ + ++GD Q+I+ F G DI + + L N+RS R +VE+
Sbjct: 275 LERAFSRHSALILIGDPKQAIYGFRGGDIHTY--LKAAGTADARYTLGVNWRSDRALVES 332
Query: 554 ASSLIQ 559
++++
Sbjct: 333 LQTVLR 338
Score = 52 (23.4 bits), Expect = 4.6e-05, Sum P(4) = 4.6e-05
Identities = 25/86 (29%), Positives = 39/86 (45%)
Query: 253 LEAACGDMSTPLL--IVAGPGSGKGISPSNILAMTFTTAAASEMRDRI-GSIVGKATAKE 309
LEA+ G T L +V + + +L +TF AA+ E+R+R+ G IV A +
Sbjct: 19 LEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASRELRERVRGQIVEAVGALQ 78
Query: 310 LTISTFHSFSLQLCR-SHAEKLERTS 334
L R S AE+ ++ S
Sbjct: 79 GDAPPSGELVEHLLRGSDAERAQKRS 104
Score = 46 (21.3 bits), Expect = 0.00017, Sum P(4) = 0.00017
Identities = 14/60 (23%), Positives = 31/60 (51%)
Query: 212 SMDLAGDMKSSMEKTDTIQTIKTQNMPDEY-SKYLQSLNDQQLEAACGDMSTPLLIVAGP 270
S+ +AGD + +E +++ + T+ + D Y + + + D +L A ++ L +V P
Sbjct: 131 SLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEA-LALALAVVDDP 189
Score = 44 (20.5 bits), Expect = 4.6e-05, Sum P(4) = 4.6e-05
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 838 EHFRTQRHDNENS-VTLTTIHQSKGLEWDIVFV 869
EH R R D++ + V + T+ +KGL++ IV++
Sbjct: 591 EHNR--RLDSDAAAVQIMTVFVAKGLQFPIVYL 621
Score = 43 (20.2 bits), Expect = 4.6e-05, Sum P(4) = 4.6e-05
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 893 SVEEERRLLYVAMTRARKKL 912
+ + RL YVA+TRA+ ++
Sbjct: 667 AAHDNLRLTYVALTRAQSQV 686
>ZFIN|ZDB-GENE-041210-99 [details] [associations]
symbol:fbxo18 "F-box protein, helicase, 18"
species:7955 "Danio rerio" [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] InterPro:IPR000212 InterPro:IPR001810
InterPro:IPR014016 InterPro:IPR014017 Pfam:PF00580 Pfam:PF13361
PROSITE:PS50181 SMART:SM00256 ZFIN:ZDB-GENE-041210-99 GO:GO:0005524
GO:GO:0003677 SUPFAM:SSF81383 GO:GO:0004003 PANTHER:PTHR11070
GeneTree:ENSGT00390000011669 EMBL:BX248111 IPI:IPI00493810
Ensembl:ENSDART00000091630 Bgee:E9QBZ9 Uniprot:E9QBZ9
Length = 1011
Score = 105 (42.0 bits), Expect = 0.00028, Sum P(4) = 0.00028
Identities = 35/118 (29%), Positives = 60/118 (50%)
Query: 800 FLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFR-TQRHDNENSVTLTTIHQ 858
F+ K A E D++ +G + +++ + I E + Q + L T+H+
Sbjct: 785 FMGLKGYAIASE---DRELEGKLAMVEKYNKRIPELVRRIYDCAQGSPQDADFILGTVHK 841
Query: 859 SKGLEWDIVFVAKANETEIPLV-HEFNGAVNEKGTSV-EEERRLLYVAMTRARKKLFI 914
SKGLE+D+V V + ++P H A +V ++E L+YVA+TRA+K L+I
Sbjct: 842 SKGLEFDVVVVTD-DFAKVPCARHNLRRAGGFSIDNVPDDEWNLIYVAITRAKKTLYI 898
Score = 68 (29.0 bits), Expect = 0.00028, Sum P(4) = 0.00028
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 474 DSWKAIIVDEFQDTSAMQYSLLQILASHN--RITIVGDDDQSIFSFNGA 520
D + AI +DE QD + + ++ I+ S +I +VGD Q I++F GA
Sbjct: 591 DRYDAIFIDEAQDCTPV---IMDIMLSQRCGKI-LVGDPHQQIYTFRGA 635
Score = 55 (24.4 bits), Expect = 0.00028, Sum P(4) = 0.00028
Identities = 30/130 (23%), Positives = 50/130 (38%)
Query: 57 DSNSIPIESPDSITSVKRVPLAEIPVSTPSLQTINGVKSVVGEFSGIS---CVLNDLSNE 113
++ S + P S++ R P + TP+ + G+ GI+ V +S+
Sbjct: 26 NTGSQSLTQPFSVSLNNRDPNQRLQPRTPTKRR-RRASDGAGQQKGITDFFSVTGVISSS 84
Query: 114 RTNGVPLDISDPFITPIKQ-PEFFNMSESFSMPSPLDDDFDDSILQEIDAICEKSAAKDV 172
G I + K P+ N+ E F M +D FDD EI ++ ++ A V
Sbjct: 85 PQKGTKTPIKNEEEEEEKCIPQEENVEEDF-MEGITEDMFDDDFEMEIVSVKKEQAEVAV 143
Query: 173 RKAQNSGIYE 182
K E
Sbjct: 144 NKGDEEDSVE 153
Score = 44 (20.5 bits), Expect = 0.00028, Sum P(4) = 0.00028
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 228 TIQTIKTQNMPDEYSKYLQSLNDQQLEAA 256
T Q + TQ++P EY K + L +Q E A
Sbjct: 519 TDQRVDTQHVPFEY-KNTKGLREQPDEEA 546
>UNIPROTKB|Q888Y5 [details] [associations]
symbol:PSPTO_0879 "Uncharacterized protein" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000212 InterPro:IPR014016 InterPro:IPR014017
Pfam:PF00580 Pfam:PF13361 PROSITE:PS51198 GO:GO:0005524
GO:GO:0003677 HSSP:P09980 GO:GO:0004003 PANTHER:PTHR11070
EMBL:AE016853 GenomeReviews:AE016853_GR eggNOG:COG0210 OMA:QLYRFRG
HOGENOM:HOG000040837 ProtClustDB:CLSK912629 RefSeq:NP_790718.1
ProteinModelPortal:Q888Y5 DNASU:1182508 GeneID:1182508
KEGG:pst:PSPTO_0879 PATRIC:19992965
BioCyc:PSYR223283:GJIX-893-MONOMER Uniprot:Q888Y5
Length = 485
Score = 102 (41.0 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 45/179 (25%), Positives = 79/179 (44%)
Query: 748 SISAVITSVANMVPQKYLLEQRAVVDF----DGGKLLNEDNDLRSVLQY--LLADVTDFL 801
++S VI + +V Q + ++ +D D L + +Q LL D D+
Sbjct: 303 TVSGVIENALRLVNQDHRMQWIGGIDSYSLRDLEDLFYFSRHMNDQVQQRKLLTDYADY- 361
Query: 802 STKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKG 861
AK D + I +++ + D E + + + +VTL+T H++KG
Sbjct: 362 DQYVVIAK--ATQDPEMLRSIKMIENYPDLPKRIEQLRGASVTSELDATVTLSTAHRAKG 419
Query: 862 LEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD 920
LEWD V + + PL + + + +E LLYVA+TRA K L + +++D
Sbjct: 420 LEWDFVGLYDDFSAD-PLSPDIDAGKRD------DELNLLYVAVTRAMKILAVNSLVID 471
Score = 70 (29.7 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 28/113 (24%), Positives = 53/113 (46%)
Query: 478 AIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKE 537
AI++DE QD + + +L+QI ++T VGD Q ++ F GA D+ + E
Sbjct: 193 AILLDEGQDVNPVIANLVQI-QKITQVT-VGDRHQQLYRFRGA----VDALNSPAMKDAE 246
Query: 538 IR-LTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
LT+++R + A+ ++ ++ L+ + G ++K ED
Sbjct: 247 KHFLTQSFRFGPAVAYVANVILSFKGEKIPLQGL------GQPTLVKRALPED 293
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.133 0.377 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1148 1139 0.00091 123 3 11 22 0.38 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 63
No. of states in DFA: 621 (66 KB)
Total size of DFA: 486 KB (2227 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 106.07u 0.13s 106.20t Elapsed: 00:00:05
Total cpu time: 106.09u 0.13s 106.22t Elapsed: 00:00:05
Start: Tue May 21 06:05:02 2013 End: Tue May 21 06:05:07 2013