BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001127
(1148 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255539935|ref|XP_002511032.1| ATP-dependent DNA helicase pcrA, putative [Ricinus communis]
gi|223550147|gb|EEF51634.1| ATP-dependent DNA helicase pcrA, putative [Ricinus communis]
Length = 1089
Score = 1464 bits (3790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 750/1156 (64%), Positives = 888/1156 (76%), Gaps = 75/1156 (6%)
Query: 1 MLKENVNVTTHLPVDQINESHRSRVSQNFRAAKPFLDRKRQRQAVDFDRQFPNKSRDSNS 60
M KEN + T R+R+SQNF+AAK L RKR D + S+D+
Sbjct: 1 MSKENSKIMT--------PEQRARISQNFKAAKALLSRKRP-----LDSSSSSSSKDA-- 45
Query: 61 IPIESPDSITSVKRVPLAEIPVSTPSLQTINGVKSVVGEFSGISCVLNDLSNERTNGVPL 120
ESP T+VKRVPL E+ +TPS NG+KS ND+S R V L
Sbjct: 46 ---ESP--FTNVKRVPLMEMQTNTPSSFRANGIKS------------NDISCSRLTSVSL 88
Query: 121 D---ISDPFITPIKQ-PEFFNMSESFSMPSPLDDDFDDSILQEIDAICEKSAAKDVRKAQ 176
D ITPIKQ PE + +S++ S P+ LDDDFD+SIL+EIDAIC++S+A V +
Sbjct: 89 GNECCLDSVITPIKQHPECWGLSDNLSTPTLLDDDFDESILKEIDAICDQSSAAKVETQR 148
Query: 177 -NSGIYEETHQNDNSCTHLNASLESVTTNENIRMDISMDLAGDMKSSMEKTDTIQTIKTQ 235
NS + +N+ +L S+ +E+IR G ++ +E DT QT+K
Sbjct: 149 FNSSSFSVDKSEENTSDF--TTLLSIAASEDIRTQ------GTLEPRLEDKDTSQTVKHG 200
Query: 236 NMPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKGISPSNILAMTFTTAAASEMR 295
NMP+EYSKYLQSLN++Q EAAC +S PL+IVAGPGSGKGI P+NILAMTFTT+AASEMR
Sbjct: 201 NMPEEYSKYLQSLNNRQREAACTHISIPLMIVAGPGSGKGIGPTNILAMTFTTSAASEMR 260
Query: 296 DRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVRLL 355
DRIG + GKA AKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHG QRRAIIEAVRLL
Sbjct: 261 DRIGGVAGKAIAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGHQRRAIIEAVRLL 320
Query: 356 ENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDVAK 415
E EK TD+ + + + + +L + + F+ AK
Sbjct: 321 EKEK--------TDVQSLHA----CKPAEALNGIILIYWCALFQ--------------AK 354
Query: 416 ASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDS 475
ASGKTPA+++K+GDEIGA+IL NYN IL+SCNALDYHDLISCSVKLL+ +P+VF+E QDS
Sbjct: 355 ASGKTPADYQKMGDEIGASILGNYNDILKSCNALDYHDLISCSVKLLTDYPDVFKECQDS 414
Query: 476 WKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNY 535
WKAI+VDEFQDTS MQY LL++LASHN ITIVGDDDQSIFSFNGADISGFDSFR DF NY
Sbjct: 415 WKAIVVDEFQDTSGMQYRLLRLLASHNHITIVGDDDQSIFSFNGADISGFDSFRLDFPNY 474
Query: 536 KEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFI 595
+EIRL +NYRSTR IVEAASSLIQ+N+KRC+ K+V TDNS GSKI IKEC E AQC+F+
Sbjct: 475 REIRLNKNYRSTRHIVEAASSLIQNNMKRCRFKDVVTDNSSGSKITIKECQTEHAQCSFV 534
Query: 596 IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGVAFYRKKVVRA 655
+DKILE AS+G + +YG+IAILYRRQVSGK+FQ AFR+RK+PFN+HGVAFYRKKVV+A
Sbjct: 535 LDKILEMASDGSPAKQNYGNIAILYRRQVSGKLFQVAFRDRKMPFNVHGVAFYRKKVVKA 594
Query: 656 IIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGA 715
IIAMLRT LP CDDGPYR+ FKA L EK+EKKRV+DH++KI TIRKCSFISAA DIF A
Sbjct: 595 IIAMLRTALPKCDDGPYRQAFKALLPFEKDEKKRVVDHVEKILTIRKCSFISAAKDIFSA 654
Query: 716 KISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFD 775
KISGTFKRSQL QGRKVLLTLEMI KLV RE SISAVITSVANMVPQ+YLLEQRAVVD D
Sbjct: 655 KISGTFKRSQLNQGRKVLLTLEMILKLVHREQSISAVITSVANMVPQQYLLEQRAVVDVD 714
Query: 776 GGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISER 835
GGKLLNEDNDLRSVLQYLL DV+DFLS + A K+ G V ++++GCI LK FIDYI+ER
Sbjct: 715 GGKLLNEDNDLRSVLQYLLDDVSDFLSMQ-CAIKDVGAVREEERGCITTLKDFIDYITER 773
Query: 836 ETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVE 895
E E+FR+ RH+NENSVTLTTIHQSKGLEWDIVF+ KANE+EIPL+HEFNG E GTS+E
Sbjct: 774 EKENFRSWRHENENSVTLTTIHQSKGLEWDIVFIIKANESEIPLLHEFNGITKENGTSIE 833
Query: 896 EERRLLYVAMTRARKKLFILYVMMDANWQLLQPSRFLKEIPHHLREVQAE---QSVQDQH 952
EERRLLYVAMTRARKKLFILY +D+NWQ+LQPSRFLKEIP HLRE+QAE + +Q +
Sbjct: 834 EERRLLYVAMTRARKKLFILYYTLDSNWQMLQPSRFLKEIPDHLREIQAEVCLRDLQTEP 893
Query: 953 ENIPEGTAQFTINLPREENCCETDLVSTDFLNVQLSGAATESMELLEACNGNSFLRRFSV 1012
++I +GT T +LP E+ E DFL +Q + ES + ++ CNGNSFL+RF+V
Sbjct: 894 QDISKGTVNSTTSLPGEKQPSEVHRDPIDFLEIQNNNDLKESKDPVDVCNGNSFLKRFAV 953
Query: 1013 EDRSIISHLFHQWAKKKAFQEPKRLLNKVDFVIDERLRVKKNKHKDVLRALKSCLSSNEA 1072
DRS++SHLFHQWAKK+AFQ PKRLL+KV FVIDERLR+KKNKHKDVLRALK+CLS +EA
Sbjct: 954 VDRSVVSHLFHQWAKKQAFQNPKRLLDKVGFVIDERLRIKKNKHKDVLRALKACLSCDEA 1013
Query: 1073 FHYAEYVLRWEKIPADQRAHMIREKQEHFQKLRIENSMGSSAPTSKQIAFLRSLGCTEAP 1132
F YAEY LRWE+IPAD+RAHM+REKQE+FQK+RIENSM +SAPT KQI +L++LGCT P
Sbjct: 1014 FQYAEYALRWEQIPADERAHMMREKQEYFQKVRIENSMSTSAPTPKQIGYLQNLGCTVVP 1073
Query: 1133 ASRLHASRLIEQYKSL 1148
SRLHASRLIEQYKSL
Sbjct: 1074 TSRLHASRLIEQYKSL 1089
>gi|359490106|ref|XP_002277737.2| PREDICTED: ATP-dependent DNA helicase pcrA-like [Vitis vinifera]
Length = 1113
Score = 1412 bits (3656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 726/1127 (64%), Positives = 860/1127 (76%), Gaps = 58/1127 (5%)
Query: 55 SRDSNSIPIESPDSITSVKRVPLAEIPVSTPSLQTINGVKSVVGEFSGISCV-------- 106
SR+ ++ IE+ ++KR+PLAE+ ++TPS + G K+ GE SC
Sbjct: 12 SRNEDANRIETLAQAENIKRLPLAEVSINTPSPFSKKGFKTTDGECEKSSCSGGITINGS 71
Query: 107 --LNDLSNERTNGVPLDISDPFI-----TPIKQPEFFNMSESFSMPSPLDDDFDDSILQE 159
++D R GVPL D FI TP+K ++ +S + LDDD +SIL+E
Sbjct: 72 KSVHDGLCVRAVGVPL--VDGFILDSSETPMKGKVCPSVGDSLMSTNILDDDLCESILEE 129
Query: 160 IDAICE-KSAAKDVRKAQNSGIYEETHQNDNSCTHLNASLESVTTNENIRMDISMDLAGD 218
IDA+CE KSAAK + NS I E+ + +++ SV + + + L GD
Sbjct: 130 IDALCEQKSAAKTEGQCPNSIISMESQFRVKNGGKDSSNWGSVDAEKFLLTASMLRLEGD 189
Query: 219 MKSSMEKTDTIQTIKTQNMPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---- 274
+ S E Q + +MPDEYSKYLQSLND Q EAAC D+S PL+IVAGPGSGK
Sbjct: 190 LNSGAE-----QAAQPASMPDEYSKYLQSLNDTQREAACSDISIPLMIVAGPGSGKTSTM 244
Query: 275 ----------GISPSNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCR 324
GISPSNILAMTFTTAAASEM RI ++ GK TAKE+T+STFHSF+LQLCR
Sbjct: 245 VGRILMLLNEGISPSNILAMTFTTAAASEMSGRIAAVAGKETAKEVTVSTFHSFALQLCR 304
Query: 325 SHAEKLERTSEFLIYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASL 384
SHAEKL RTSEFLIYGHGQQRRAIIEAVR+ E E ++ G +
Sbjct: 305 SHAEKLGRTSEFLIYGHGQQRRAIIEAVRIFETE--------NSKKNNNGSKVGEESNDI 356
Query: 385 FMMNAMLFFSMSSFKLCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILR 444
N+ F S K + KF + AKASGKTP E R +GDEIGA+IL NY+ ILR
Sbjct: 357 ---NSPQNFKDKSKK---WQKF----VTQAKASGKTPEECRNMGDEIGASILGNYSKILR 406
Query: 445 SCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRI 504
+CNALDYHDLISCSVKLLS FPEVF+E Q+SWKA+++DEFQDTSAMQY LL+ILASHNRI
Sbjct: 407 TCNALDYHDLISCSVKLLSDFPEVFRECQESWKAVVIDEFQDTSAMQYCLLRILASHNRI 466
Query: 505 TIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKR 564
TIVGD+DQSIFSFNGAD+SGF+SFRKDF N+KEIRL +NYRSTRCI+EAASSLIQ+N+KR
Sbjct: 467 TIVGDEDQSIFSFNGADVSGFNSFRKDFPNHKEIRLNKNYRSTRCILEAASSLIQNNMKR 526
Query: 565 CQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQV 624
CQ K V TDNS GS++ IKECH+E+AQCAF++DKILE S+ + S+GS+AILYRRQV
Sbjct: 527 CQSKKVLTDNSTGSRVTIKECHSEEAQCAFVVDKILEITSDDSVAKYSFGSVAILYRRQV 586
Query: 625 SGKVFQTAFRERKIPFNIHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEK 684
SGKVFQTAFR+RKIPFNIHGVAFYRKKVVRAI+AMLRTTL GCDDG YR+VFKA L +K
Sbjct: 587 SGKVFQTAFRDRKIPFNIHGVAFYRKKVVRAIVAMLRTTLSGCDDGSYRQVFKALLPCDK 646
Query: 685 EEKKRVIDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVR 744
E+KKRVI+HIDKIS RKCSF+SAA DIF AK+SGTFKRSQLTQGRKVL TL+MISKLV
Sbjct: 647 EDKKRVIEHIDKISITRKCSFVSAASDIFSAKVSGTFKRSQLTQGRKVLFTLDMISKLVH 706
Query: 745 REPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTK 804
RE SISAVITSVANM+PQKYLLEQRAVVD DGGKLLNEDND+RSVLQYLL DV+DFLSTK
Sbjct: 707 REQSISAVITSVANMIPQKYLLEQRAVVDVDGGKLLNEDNDIRSVLQYLLDDVSDFLSTK 766
Query: 805 FTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEW 864
FTA+KEE ++ + GC +VLKAFID+ISERE E+FR++RHDNE SVTLTTIHQSKGLEW
Sbjct: 767 FTASKEESDIIVKEGGCGHVLKAFIDFISERERENFRSRRHDNEESVTLTTIHQSKGLEW 826
Query: 865 DIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQ 924
D VF+ KANE+EIPL+HEFNG V E GTS+EEERRLLYV MTRARKKLFILYV+MD++WQ
Sbjct: 827 DTVFIVKANESEIPLLHEFNGVVKENGTSIEEERRLLYVGMTRARKKLFILYVLMDSSWQ 886
Query: 925 LLQPSRFLKEIPHHLREVQAEQSVQDQH---ENIPEGTAQFTINLPREENCCETDLVSTD 981
+LQPSRFLKEIPHHL EVQ E SVQ H E+ P AQFTI ++ ++ +
Sbjct: 887 MLQPSRFLKEIPHHLLEVQGELSVQGLHAKQESTPIENAQFTIGEGGDKKSSREYILPNE 946
Query: 982 FLNVQLSGAATESMELLEACNGNSFLRRFSVEDRSIISHLFHQWAKKKAFQEPKRLLNKV 1041
LN+Q+ + E+ E + +C+GNSFLRRF+VEDRS++SHLFH WAKK+AFQEPKRLL+KV
Sbjct: 947 GLNIQIDECSKETTEPMGSCDGNSFLRRFNVEDRSVVSHLFHHWAKKQAFQEPKRLLDKV 1006
Query: 1042 DFVIDERLRVKKNKHKDVLRALKSCLSSNEAFHYAEYVLRWEKIPADQRAHMIREKQEHF 1101
F IDERLRV KNKHKD LR LKS L +EAFHYAEY+L+WEKIPAD+RAH++R KQEHF
Sbjct: 1007 GFAIDERLRVTKNKHKDALRELKSSLKCDEAFHYAEYILKWEKIPADKRAHLMRMKQEHF 1066
Query: 1102 QKLRIENSMGSSAPTSKQIAFLRSLGCTEAPASRLHASRLIEQYKSL 1148
KLRIEN+MGSSAPTSKQI++L++LGCT P SRLHAS LIEQYKSL
Sbjct: 1067 LKLRIENAMGSSAPTSKQISYLQNLGCTVVPTSRLHASHLIEQYKSL 1113
>gi|224114652|ref|XP_002332333.1| predicted protein [Populus trichocarpa]
gi|222832580|gb|EEE71057.1| predicted protein [Populus trichocarpa]
Length = 1056
Score = 1412 bits (3654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 733/1141 (64%), Positives = 858/1141 (75%), Gaps = 106/1141 (9%)
Query: 17 INESHRSRVSQNFRAAKPFLDRKRQRQAVDFDRQFPNKSRDSNSIPIESPDSITSVKRVP 76
I E R+R+S NF+AAK L RKR ++ + +N P E P
Sbjct: 13 ITEEQRARISHNFKAAKALLARKRPLDSIS--------AATANKFPHE----------FP 54
Query: 77 LAEIPVSTPSLQTIN-GVKSVVGEFSGISCVLNDLSNERTNGVPLDISDPFITPIKQPEF 135
LAE+ + P + + GV V +G ++G +S+ F+TP+K+PE
Sbjct: 55 LAEVNTNLPPSRLVQKGVTRVSELVNG------------SDGESKCLSESFVTPVKKPEG 102
Query: 136 FNMSESFSMPSPL-----DDDFDDSILQEIDAICEKSAAKDVRKAQNSGIYEETHQNDNS 190
S+ S S DDDF++SIL+EIDAICE+ + V K E+ S
Sbjct: 103 SGFSDCLSTLSSSASILDDDDFNESILEEIDAICEQKSVVKVEK--------ESPNRSFS 154
Query: 191 CTHLNASLESVTTNENIRMDISMDLAGDMKSSMEKTDTIQTIKTQNMPDEYSKYLQSLND 250
+ L++ T ++I NMP+EY KYLQ LND
Sbjct: 155 VECMRDVLDTPTEEKSI------------------------CPCGNMPEEYVKYLQGLND 190
Query: 251 QQLEAACGDMSTPLLIVAGPGSGKGISPSNILAMTFTTAAASEMRDRIGSIVGKATAKEL 310
+Q EAAC D+S PL+++AGPGSGKGISPSNILAMTFTTAAA+EMRDRIG++ GKA AKEL
Sbjct: 191 RQREAACSDISVPLMLIAGPGSGKGISPSNILAMTFTTAAAAEMRDRIGAVAGKAKAKEL 250
Query: 311 TISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVRLLENEKILVVKRISTDM 370
ISTFHSFSLQLCRSHAEKL RTSEFLIYGHG QRRAIIEAVRLLE EK +
Sbjct: 251 MISTFHSFSLQLCRSHAEKLGRTSEFLIYGHGHQRRAIIEAVRLLEKEKSV--------- 301
Query: 371 LTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDVAKASGKTPAEFRKIGDE 430
++ +F S K + KF + AKASGKTPA+F + GDE
Sbjct: 302 ------------------SLEYFKDKSKK---WQKF----VTQAKASGKTPADFHRRGDE 336
Query: 431 IGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAM 490
IGAAIL NYN ILRSCNALDYHDLISCSVKLL+ FPEVF++ +DSWKAI++DEFQDTSAM
Sbjct: 337 IGAAILGNYNDILRSCNALDYHDLISCSVKLLTDFPEVFEDCKDSWKAIVIDEFQDTSAM 396
Query: 491 QYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCI 550
QYSLL++L+SHN ITIVGDDDQSIFSFNGA+ISGFDSFR DF NYKEIRL +NYRSTR I
Sbjct: 397 QYSLLRLLSSHNHITIVGDDDQSIFSFNGAEISGFDSFRHDFANYKEIRLNKNYRSTRYI 456
Query: 551 VEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASI 610
VEAASSLIQ+N+KRCQ K+V TDNS GSKI IKEC NE A+CAF++DKILE AS+G S
Sbjct: 457 VEAASSLIQNNMKRCQFKDVLTDNSCGSKIAIKECQNERAECAFVVDKILEAASDGSHSK 516
Query: 611 CSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGVAFYRKKVVRAIIAMLRTTLPGCDDG 670
SYGSIAILYRRQVSGK+FQ AFRERKIPFN+HGVAFYRKKVV+AIIAMLRTTLPGCDDG
Sbjct: 517 PSYGSIAILYRRQVSGKIFQLAFRERKIPFNVHGVAFYRKKVVKAIIAMLRTTLPGCDDG 576
Query: 671 PYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGR 730
Y +VFKA L EKEEK+RVI+H+DKIST+RKCSFI+AACD+F AKISGTFKRSQLTQGR
Sbjct: 577 SYHQVFKALLPFEKEEKRRVIEHVDKISTVRKCSFIAAACDVFSAKISGTFKRSQLTQGR 636
Query: 731 KVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVL 790
KVL TL+MISKLV RE SISAVITSVANMVPQKYLLEQRAVVD DGGK LNEDNDLRSVL
Sbjct: 637 KVLSTLQMISKLVHREQSISAVITSVANMVPQKYLLEQRAVVDSDGGKWLNEDNDLRSVL 696
Query: 791 QYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENS 850
QYLL DV+D LS + + + E +V Q++KGC+++LK FIDYI+ERE E+FR++RH+NENS
Sbjct: 697 QYLLDDVSDVLSMQVASKEGESDV-QEQKGCVSLLKEFIDYITEREKENFRSRRHNNENS 755
Query: 851 VTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARK 910
VTLTTIHQSKGLEWD VF+ KANE+EIPL+HEFNG+ E G S+EEERRL YVAMTRARK
Sbjct: 756 VTLTTIHQSKGLEWDTVFIVKANESEIPLLHEFNGSAKENGNSIEEERRLFYVAMTRARK 815
Query: 911 KLFILYVMMDANWQLLQPSRFLKEIPHHLREVQAE---QSVQDQHENIPEGTAQFTINLP 967
KLFI YV MD+NWQ+L PSRFLKEIP HLRE+QAE Q +Q +H I T F I+LP
Sbjct: 816 KLFITYVAMDSNWQMLHPSRFLKEIPDHLREIQAEVCLQDLQTKHREIGNETIDFVIDLP 875
Query: 968 REENCCETDLVSTDFLNVQLSGAATESMELLEACNGNSFLRRFSVEDRSIISHLFHQWAK 1027
+E+ + + S DFL Q++ A+ ES+E +++ NGN FLRRF+VE+RS+ISHLFHQWAK
Sbjct: 876 KEQKVSDLETESNDFLVNQINEASKESLETIDSYNGNIFLRRFAVEERSVISHLFHQWAK 935
Query: 1028 KKAFQEPKRLLNKVDFVIDERLRVKKNKHKDVLRALKSCLSSNEAFHYAEYVLRWEKIPA 1087
K+AFQ PKRLLNKV FVIDERLRV+KNKHKDVLRALKSCLS +EAF YAEYVLRWE+IPA
Sbjct: 936 KQAFQNPKRLLNKVGFVIDERLRVEKNKHKDVLRALKSCLSCDEAFQYAEYVLRWEQIPA 995
Query: 1088 DQRAHMIREKQEHFQKLRIENSMGSSAPTSKQIAFLRSLGCTEAPASRLHASRLIEQYKS 1147
DQRAH+I EKQEHFQKLRIENSM SSAPTSKQI +L++LGCT P SRLHASRLIEQYKS
Sbjct: 996 DQRAHLIHEKQEHFQKLRIENSMSSSAPTSKQIGYLQNLGCTVTPTSRLHASRLIEQYKS 1055
Query: 1148 L 1148
L
Sbjct: 1056 L 1056
>gi|356574720|ref|XP_003555493.1| PREDICTED: ATP-dependent DNA helicase pcrA-like [Glycine max]
Length = 1123
Score = 1350 bits (3495), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 716/1160 (61%), Positives = 861/1160 (74%), Gaps = 69/1160 (5%)
Query: 19 ESHRSRVSQNFRAAKPFLDRKRQRQAVDFDRQFPNKSRDSNSIPIESPDSITSVKRVPLA 78
E SR+S F A+KP L RKR D P++ + + + S++ KRVPLA
Sbjct: 3 EQQSSRISVFFSASKPLLPRKR---PSDSSPLHPHRIKSAGDVA-----SVSVAKRVPLA 54
Query: 79 EIPVSTPSLQTINGVKSVVGEFSGISCVLNDLSNERTNGVP-LDISDP------FITPIK 131
E+P L +N + SV G ++ + RT VP + +D F TP +
Sbjct: 55 EVP-----LNRLNAIGSVHGPSPD---AIHSSFSARTVSVPAVGSADENLCRSLFETPRR 106
Query: 132 QPEFFNMSE--SFSMPSPLDDDFDDSILQEIDAICE-KSAAKDVRKAQNSGIYEETHQND 188
+PE + FS LDDDFDDS L++ID +CE KSA + ++ + E+
Sbjct: 107 EPEGSKPKQLDCFSTTGLLDDDFDDSFLEQIDILCEQKSAEQQADRSSD----EKLSSKS 162
Query: 189 NSCTHLNASLESVTTNENIRMDISMDLAGDMKSSMEKTDT-IQTIKTQNMPDEYSKYLQS 247
N +N S ES T +E I + ++ S E+ D+ + + MP+EY KYL+S
Sbjct: 163 NVVGDVNLSSESGTVSEGIGNGHLLSSGIELDSREEEVDSSWRDLLNSTMPEEYLKYLKS 222
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASE 293
LND+Q EAAC D+STPL+IVAGPGSGK GISPSNILAMTFTTAAASE
Sbjct: 223 LNDRQREAACTDISTPLMIVAGPGSGKTSTMVGRVLMLLNEGISPSNILAMTFTTAAASE 282
Query: 294 MRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVR 353
MR+RIG+I GKATAKELTISTFHSFSLQLCRSH EKL RTSEFLIYG GQQR AIIEA+R
Sbjct: 283 MRERIGAIAGKATAKELTISTFHSFSLQLCRSHGEKLGRTSEFLIYGQGQQRNAIIEAIR 342
Query: 354 LLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDV 413
LLE K DG S + N F K ++ KF +
Sbjct: 343 LLEIGK----------SENKDGALLIGELSNSLNNPKQFKD----KAKKWQKF----VAQ 384
Query: 414 AKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQ 473
AKASG+T AE+RK+G+EIGAAIL+NYN IL+SCNALDYHDLISCSVKLLS FPEVF+E Q
Sbjct: 385 AKASGRTSAEYRKMGNEIGAAILKNYNNILKSCNALDYHDLISCSVKLLSDFPEVFKECQ 444
Query: 474 DSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDSFRKDFL 533
DSWKAI++DEFQDTSAMQY L++LASH++ITIVGDDDQSI+SFNGADISGF SFR DF
Sbjct: 445 DSWKAIVIDEFQDTSAMQYKFLKMLASHHKITIVGDDDQSIYSFNGADISGFISFRNDFP 504
Query: 534 NYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCA 593
NYKEIRL +NYRSTRCIVEAASSLIQ+N KRCQLKNV TDNS GSKI++KECHNEDAQCA
Sbjct: 505 NYKEIRLNKNYRSTRCIVEAASSLIQNNSKRCQLKNVLTDNSSGSKIVMKECHNEDAQCA 564
Query: 594 FIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGVAFYRKKVV 653
F++DKI+E +SN A+ C YG+IAILYRRQ+SGK FQ AFR+RKIPFNIHGVAFYRKKVV
Sbjct: 565 FVVDKIIEISSNYSAANCCYGNIAILYRRQISGKAFQMAFRDRKIPFNIHGVAFYRKKVV 624
Query: 654 RAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIF 713
R I+AMLRT LPGCDDG Y RVFKA + LEK++KKR+IDHI+KISTIR+CSF+SAA DIF
Sbjct: 625 RTIMAMLRTALPGCDDGSYSRVFKALMPLEKDKKKRIIDHINKISTIRRCSFLSAASDIF 684
Query: 714 GAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVD 773
AKISGTFKRS+LT GRK+L+TLEMISKL++RE SISA+I+SVANM+P+KYLLEQRAVVD
Sbjct: 685 SAKISGTFKRSELTHGRKILMTLEMISKLIQREKSISAIISSVANMIPEKYLLEQRAVVD 744
Query: 774 FDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYIS 833
DGG LLNED D+RSVLQYLL DV++FLSTK KEE + +D KGCI VLKAFIDY+
Sbjct: 745 VDGGTLLNEDYDIRSVLQYLLDDVSEFLSTKLVEVKEEREISED-KGCIFVLKAFIDYLL 803
Query: 834 ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTS 893
ERE E+F +R DNENSVTLTTIHQ+KGLEWD+VF+ KAN++EIPL+H+F G V +
Sbjct: 804 EREKENFGARRKDNENSVTLTTIHQAKGLEWDVVFIVKANDSEIPLLHDFKGTVKDTAAL 863
Query: 894 VEEERRLLYVAMTRARKKLFILYVMMDANWQLLQPSRFLKEIPHHLREVQAEQSVQD--- 950
+EEERRLLYVAMTRAR+KLFIL+VMMD+NWQ+LQPSRFLKEIP HL EVQ E S Q+
Sbjct: 864 LEEERRLLYVAMTRAREKLFILHVMMDSNWQMLQPSRFLKEIPRHLTEVQGEISFQELLI 923
Query: 951 QHENIPEGTAQFTINLPREENCCETDLVST--DFLNVQLSGAATESMELLEACNGNSFLR 1008
+ E + + TA T +L +E E D++ + L+ S + E + EA N N FLR
Sbjct: 924 KQEALQKETAHCTTDLLIKEKQSEADVIPMPHEILDNHSSETSNELAQFAEANNRNDFLR 983
Query: 1009 RFSVEDRSIISHLFHQWAKKKAFQEPKRLLNKVDFVIDERLRVKKNKHKDVLRALKSCLS 1068
RFSVE+RSI+SHLFHQWAKKKAFQ+PKRLL+KV FVIDERLR K+NK+KD+L LKSCLS
Sbjct: 984 RFSVENRSIVSHLFHQWAKKKAFQDPKRLLDKVSFVIDERLRQKRNKNKDLLNTLKSCLS 1043
Query: 1069 SNEAFHYAEYVLRWEKIPADQRAHMIREKQEHFQKLRIENSMGSSAPTSKQIAFLRSLGC 1128
+EAF YA+YVLRWE+IPAD+RAH++REKQEHF KL+IEN+MGS+ PT KQI++L+ LGC
Sbjct: 1044 CDEAFQYAQYVLRWEQIPADKRAHLMREKQEHFLKLKIENAMGSATPTDKQISYLKKLGC 1103
Query: 1129 TEAPASRLHASRLIEQYKSL 1148
T P SRLHAS LIEQ+KSL
Sbjct: 1104 TAIPTSRLHASHLIEQFKSL 1123
>gi|240256061|ref|NP_194242.6| P-loop containing nucleoside triphosphate hydrolase-like protein
[Arabidopsis thaliana]
gi|332659614|gb|AEE85014.1| P-loop containing nucleoside triphosphate hydrolase-like protein
[Arabidopsis thaliana]
Length = 1149
Score = 1349 bits (3492), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 708/1163 (60%), Positives = 847/1163 (72%), Gaps = 60/1163 (5%)
Query: 19 ESHRSRVSQNFRAAKPFLDRKRQ-RQAVDFDRQFPNKSRDSNSIPIESPDSITSVKRVPL 77
E R+SQ+FR+AKP LDRKR A + P + ++S + ES + PL
Sbjct: 14 EYSHGRISQSFRSAKPLLDRKRPIENAPNSSNPLPQRMKES--MDTESVSHNINFNSTPL 71
Query: 78 AEIPVSTPSLQTINGVKSVVGEFSGISCVLN------DLSNERTNGVPLDI-------SD 124
E+ +TP + ++S G C L DL E NG DI S+
Sbjct: 72 MELSANTPYKRLKPEIESYA---DGHPCGLRTPPPRFDLDKEIINGFQTDIYADVGSLSE 128
Query: 125 PFITPIKQPEFFNMSESFSMPSPLDDDFDDSILQEIDAICEKSAAKDVRKAQNSGIYEET 184
F+TP+K+PE +S S S LDDDFDDSIL+EID ICE+SA K + + IY+ T
Sbjct: 129 AFVTPLKEPERVTLSNGCSTSSILDDDFDDSILEEIDLICEQSARKAACQTPTTSIYQ-T 187
Query: 185 HQNDNSCTHLNASLESVTTNENIRMDISMDLAGDMKSSMEKTDTIQTIKT--QNMPDEYS 242
DN + ASL+ E D ++ L D E+T TI +MPDE S
Sbjct: 188 PSKDNKSSDPKASLD-FRDVEKFEPDSNVKLKLD-----EETPTIAADPALLNSMPDECS 241
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTT 288
KY+ SLND+Q +AAC ++STPL+++AGPGSGK G+ PSNILAMTFT
Sbjct: 242 KYMLSLNDRQRDAACSNISTPLMVIAGPGSGKTSTMVGRVLVLLNEGLLPSNILAMTFTK 301
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA SEMR+RIG GK AK++TISTFHSFSLQLCR HA+KL+RTSEF +YGHGQQRRAI
Sbjct: 302 AATSEMRERIGKSAGKKAAKDITISTFHSFSLQLCRMHADKLQRTSEFSVYGHGQQRRAI 361
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
IEAVRL E EK K S + + G A + +S ++ KF
Sbjct: 362 IEAVRLYEEEK----KNGSKTSVPCESGEGLNGAGAGAVCPEYAKDLSK----KWQKFVT 413
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
G KASGK+P + RK+G+EIGA IL NYN IL++C+ALDYHDLISCSV LLS FPEV
Sbjct: 414 QG----KASGKSPEQCRKMGNEIGAKILGNYNDILKACDALDYHDLISCSVTLLSDFPEV 469
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDSF 528
F+E QD+WKAIIVDEFQDTS MQY LL++L SHN ITIVGDDDQSIF FNGAD SGFDSF
Sbjct: 470 FKECQDTWKAIIVDEFQDTSTMQYKLLRMLGSHNHITIVGDDDQSIFGFNGADSSGFDSF 529
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
R+DF NYKE+RL +NYRS+R IVEAASS+I++N KRCQ K++ ++NS GSKI +KECHNE
Sbjct: 530 RRDFPNYKEVRLIKNYRSSRHIVEAASSIIKNNTKRCQSKSISSENSQGSKITVKECHNE 589
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGVAFY 648
+AQCA++IDKI+E ++G CS+G IAILYRRQVSGKVFQ AFR+RKIPFN+HGVAFY
Sbjct: 590 EAQCAYVIDKIIEITNDGSTPCCSHGDIAILYRRQVSGKVFQNAFRQRKIPFNVHGVAFY 649
Query: 649 RKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISA 708
RKKVV+ I+AML+TT CDD YRRVFKA L EKEEKKR+I+HI+KIST RKCSFISA
Sbjct: 650 RKKVVQVILAMLKTTFSECDDASYRRVFKALLPFEKEEKKRIIEHIEKISTSRKCSFISA 709
Query: 709 ACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQ 768
A DIF AKISGTFKRSQLTQGRKVL TL+M++KLV RE S+SAV+T VANM+PQKYLLEQ
Sbjct: 710 ASDIFNAKISGTFKRSQLTQGRKVLQTLDMVAKLVDREQSLSAVVTCVANMIPQKYLLEQ 769
Query: 769 RAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAF 828
RAVVD DGGKLLNEDNDLRSVLQYL+ DV +F+ST T +EE + ++KKGC N L +F
Sbjct: 770 RAVVDNDGGKLLNEDNDLRSVLQYLMDDVAEFISTHCTTTEEEDAI-KEKKGC-NQLHSF 827
Query: 829 IDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVN 888
I+YISERETE+FR++R DNENSVTLTTIHQSKGLEWDIVF+ KANE EIPL+HE NG +
Sbjct: 828 INYISERETENFRSRRRDNENSVTLTTIHQSKGLEWDIVFIVKANENEIPLLHESNGNAS 887
Query: 889 EKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQPSRFLKEIPHHLREVQAEQSV 948
E GTS+EEERRLLYVAMTRARKKLF LYV +D+NWQ+LQPSRFLKEIP HL +VQ + SV
Sbjct: 888 ESGTSLEEERRLLYVAMTRARKKLFFLYVTVDSNWQVLQPSRFLKEIPGHLLQVQGDMSV 947
Query: 949 QD---QHENIPEGTAQFTINLPREENCCETDLVSTDFLNVQLSGAATESMELLEACNGNS 1005
D HEN+P T Q + + E+ L D +N+ A+ ES+ A NGN+
Sbjct: 948 NDCRKVHENLPNKTEQSVSSFGTDIKHEESKLTDNDVMNIPEDYASEESIAAY-ALNGNN 1006
Query: 1006 FLRRFSVEDRSIISHLFHQWAKKKAFQEPKRLLNKVDFVIDERLRVKKNKHKDVLRALKS 1065
FL+RF VE RS++SHLFH WAKK+AFQEPKRL++KV FVI ERL +KKNKHKDVLRALKS
Sbjct: 1007 FLKRFDVEVRSVVSHLFHNWAKKQAFQEPKRLIDKVRFVIGERLAIKKNKHKDVLRALKS 1066
Query: 1066 CLSSNEAFHYAEYVLRWEKIPADQRAHMIREKQEHFQKLRIENSMGSSAPTSKQIAFLRS 1125
L+S EAF YAE+VLRWE++PAD RAH++REKQEHFQKLRIENSMG+S TSKQIAFL S
Sbjct: 1067 SLTSEEAFQYAEHVLRWEQLPADTRAHIVREKQEHFQKLRIENSMGTSEATSKQIAFLHS 1126
Query: 1126 LGCTEAPASRLHASRLIEQYKSL 1148
LGCT P SRLHASRLIEQYKSL
Sbjct: 1127 LGCTVVPTSRLHASRLIEQYKSL 1149
>gi|262385344|gb|ACY64665.1| SRS2 [Arabidopsis thaliana]
Length = 1147
Score = 1344 bits (3479), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 707/1163 (60%), Positives = 846/1163 (72%), Gaps = 62/1163 (5%)
Query: 19 ESHRSRVSQNFRAAKPFLDRKRQ-RQAVDFDRQFPNKSRDSNSIPIESPDSITSVKRVPL 77
E R+SQ+FR+AKP LDRKR A + P + ++S + ES + PL
Sbjct: 14 EYSHGRISQSFRSAKPLLDRKRPIENAPNSSNPLPQRMKES--MDTESVSHNINFNSTPL 71
Query: 78 AEIPVSTPSLQTINGVKSVVGEFSGISCVLN------DLSNERTNGVPLDI-------SD 124
E+ +TP + ++S G C L DL E NG DI S+
Sbjct: 72 MELSANTPYKRLKPEIESYA---DGHPCGLRTPPPRFDLDKEIINGFQTDIYADVGSLSE 128
Query: 125 PFITPIKQPEFFNMSESFSMPSPLDDDFDDSILQEIDAICEKSAAKDVRKAQNSGIYEET 184
F+TP+K+PE +S S S LDDDFDDSIL+EID ICE+SA K + + IY+ T
Sbjct: 129 AFVTPLKEPERVTLSNGCSTSSILDDDFDDSILEEIDLICEQSARKAACQTPTTSIYQ-T 187
Query: 185 HQNDNSCTHLNASLESVTTNENIRMDISMDLAGDMKSSMEKTDTIQTIKT--QNMPDEYS 242
DN + ASL+ E D ++ L D E+T TI +MPDE S
Sbjct: 188 PSKDNKSSDPKASLD-FRDVEKFEPDSNVKLKLD-----EETPTIAADPALLNSMPDECS 241
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTT 288
KY+ SLND+Q +AAC ++STPL+++AGPGSGK G+ PSNILAMTFT
Sbjct: 242 KYMLSLNDRQRDAACSNISTPLMVIAGPGSGKTSTMVGRVLVLLNEGLLPSNILAMTFTK 301
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA SEMR+RIG GK AK++TISTFHSFSLQLCR HA+KL+RTSEF +YGHGQQRRAI
Sbjct: 302 AATSEMRERIGKSAGKKAAKDITISTFHSFSLQLCRMHADKLQRTSEFSVYGHGQQRRAI 361
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
IEAVRL E EK K S + + G A + +S ++ KF
Sbjct: 362 IEAVRLYEEEK----KNGSKTSVPCESGEGLNGAGAGAVCPEYAKDLSK----KWQKFVT 413
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
G KASGK+P + RK+G+EIGA IL NYN IL++C+ALDYHDLISCSV LLS FPEV
Sbjct: 414 QG----KASGKSPEQCRKMGNEIGAKILGNYNDILKACDALDYHDLISCSVTLLSDFPEV 469
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDSF 528
F+E QD+WKAIIVDEFQDTS MQY LL++L SHN ITIVGDDDQSIF FNGAD SGFDSF
Sbjct: 470 FKECQDTWKAIIVDEFQDTSTMQYKLLRMLGSHNHITIVGDDDQSIFGFNGADSSGFDSF 529
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
R+DF NYKE+RL +NYRS+R IVEAASS+I++N KRCQ K++ ++NS GSKI +KECHNE
Sbjct: 530 RRDFPNYKEVRLIKNYRSSRHIVEAASSIIKNNTKRCQSKSISSENSQGSKITVKECHNE 589
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGVAFY 648
+AQCA++IDKI+E ++G CS+G IAILYRRQVSGKVFQ AFR+RKIPFN+HGVAFY
Sbjct: 590 EAQCAYVIDKIIEITNDGSTPCCSHGDIAILYRRQVSGKVFQNAFRQRKIPFNVHGVAFY 649
Query: 649 RKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISA 708
RKKVV+ I+AML+TT CDD YRRVFKA L EKEEKKR+I+HI+KIST RKCSFISA
Sbjct: 650 RKKVVQVILAMLKTTFSECDDASYRRVFKALLPFEKEEKKRIIEHIEKISTSRKCSFISA 709
Query: 709 ACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQ 768
A DIF AKISGTFKRSQLTQGRKVL TL+M++KLV RE S+SAV+T VANM+PQKYLLEQ
Sbjct: 710 ASDIFNAKISGTFKRSQLTQGRKVLQTLDMVAKLVDREQSLSAVVTCVANMIPQKYLLEQ 769
Query: 769 RAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAF 828
RAVVD DGGKLLNEDNDLRSVLQYL+ DV +F+ST T +EE + ++KKGC N L +F
Sbjct: 770 RAVVDNDGGKLLNEDNDLRSVLQYLMDDVAEFISTHCTTTEEEDAI-KEKKGC-NQLHSF 827
Query: 829 IDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVN 888
I+YISERETE+FR++R DNENSVTLTTIHQSKGLEWDIVF+ KANE EIPL+HE NG +
Sbjct: 828 INYISERETENFRSRRRDNENSVTLTTIHQSKGLEWDIVFIVKANENEIPLLHESNGNAS 887
Query: 889 EKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQPSRFLKEIPHHLREVQAEQSV 948
E GTS+EEERRLLYVAMTRARKKLF LYV +D+NWQ+LQPSRFLKEIP HL +Q + SV
Sbjct: 888 ESGTSLEEERRLLYVAMTRARKKLFFLYVTVDSNWQVLQPSRFLKEIPGHL--LQGDMSV 945
Query: 949 QD---QHENIPEGTAQFTINLPREENCCETDLVSTDFLNVQLSGAATESMELLEACNGNS 1005
D HEN+P T Q + + E+ L D +N+ A+ ES+ A NGN+
Sbjct: 946 NDCRKVHENLPNKTEQSVSSFGTDIKHEESKLTDNDVMNIPEDYASEESIAAY-ALNGNN 1004
Query: 1006 FLRRFSVEDRSIISHLFHQWAKKKAFQEPKRLLNKVDFVIDERLRVKKNKHKDVLRALKS 1065
FL+RF VE RS++SHLFH WAKK+AFQEPKRL++KV FVI ERL +KKNKHKDVLRALKS
Sbjct: 1005 FLKRFDVEVRSVVSHLFHNWAKKQAFQEPKRLIDKVRFVIGERLAIKKNKHKDVLRALKS 1064
Query: 1066 CLSSNEAFHYAEYVLRWEKIPADQRAHMIREKQEHFQKLRIENSMGSSAPTSKQIAFLRS 1125
L+S EAF YAE+VLRWE++PAD RAH++REKQEHFQKLRIENSMG+S TSKQIAFL S
Sbjct: 1065 SLTSEEAFQYAEHVLRWEQLPADTRAHIVREKQEHFQKLRIENSMGTSEATSKQIAFLHS 1124
Query: 1126 LGCTEAPASRLHASRLIEQYKSL 1148
LGCT P SRLHASRLIEQYKSL
Sbjct: 1125 LGCTVVPTSRLHASRLIEQYKSL 1147
>gi|297744967|emb|CBI38559.3| unnamed protein product [Vitis vinifera]
Length = 951
Score = 1331 bits (3444), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 664/969 (68%), Positives = 764/969 (78%), Gaps = 75/969 (7%)
Query: 237 MPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNIL 282
MPDEYSKYLQSLND Q EAAC D+S PL+IVAGPGSGK GISPSNIL
Sbjct: 1 MPDEYSKYLQSLNDTQREAACSDISIPLMIVAGPGSGKTSTMVGRILMLLNEGISPSNIL 60
Query: 283 AMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHG 342
AMTFTTAAASEM RI ++ GK TAKE+T+STFHSF+LQLCRSHAEKL RTSEFLIYGHG
Sbjct: 61 AMTFTTAAASEMSGRIAAVAGKETAKEVTVSTFHSFALQLCRSHAEKLGRTSEFLIYGHG 120
Query: 343 QQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQ 402
QQRRAIIEAVR+ E E ++ G + N+ F S K
Sbjct: 121 QQRRAIIEAVRIFETE--------NSKKNNNGSKVGEESNDI---NSPQNFKDKSKK--- 166
Query: 403 YNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLL 462
+ KF + AKASGKTP E R +GDEIGA+IL NY+ ILR+CNALDYHDLISCSVKLL
Sbjct: 167 WQKF----VTQAKASGKTPEECRNMGDEIGASILGNYSKILRTCNALDYHDLISCSVKLL 222
Query: 463 STFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADI 522
S FPEVF+E Q+SWKA+++DEFQDTSAMQY LL+ILASHNRITIVGD+DQSIFSFNGAD+
Sbjct: 223 SDFPEVFRECQESWKAVVIDEFQDTSAMQYCLLRILASHNRITIVGDEDQSIFSFNGADV 282
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
SGF+SFRKDF N+KEIRL +NYRSTRCI+EAASSLIQ+N+KRCQ K V TDNS GS++ I
Sbjct: 283 SGFNSFRKDFPNHKEIRLNKNYRSTRCILEAASSLIQNNMKRCQSKKVLTDNSTGSRVTI 342
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI 642
KECH+E+AQCAF++DKILE S+ + S+GS+AILYRRQVSGKVFQTAFR+RKIPFNI
Sbjct: 343 KECHSEEAQCAFVVDKILEITSDDSVAKYSFGSVAILYRRQVSGKVFQTAFRDRKIPFNI 402
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRK 702
HGVAFYRKKVVRAI+AMLRTTL GCDDG YR+VFKA L +KE+KKRVI+HIDKIS RK
Sbjct: 403 HGVAFYRKKVVRAIVAMLRTTLSGCDDGSYRQVFKALLPCDKEDKKRVIEHIDKISITRK 462
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
CSF+SAA DIF AK+SGTFKRSQLTQGRKVL TL+MISKLV RE SISAVITSVANM+PQ
Sbjct: 463 CSFVSAASDIFSAKVSGTFKRSQLTQGRKVLFTLDMISKLVHREQSISAVITSVANMIPQ 522
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
KYLLEQRAVVD DGGKLLNEDND+RSVLQYLL DV+DFLSTKFTA+KEE ++ + GC
Sbjct: 523 KYLLEQRAVVDVDGGKLLNEDNDIRSVLQYLLDDVSDFLSTKFTASKEESDIIVKEGGCG 582
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+VLKAFID+ISERE E+FR++RHDNE SVTLTTIHQSKGLEWD VF+ KANE+EIPL+HE
Sbjct: 583 HVLKAFIDFISERERENFRSRRHDNEESVTLTTIHQSKGLEWDTVFIVKANESEIPLLHE 642
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQPSRFLKEIPHHLREV 942
FNG V E GTS+EEERRLLYV MTRARKKLFILYV+MD++WQ+LQPSRFLKEIPHHL EV
Sbjct: 643 FNGVVKENGTSIEEERRLLYVGMTRARKKLFILYVLMDSSWQMLQPSRFLKEIPHHLLEV 702
Query: 943 QAEQSVQDQH---ENIPEGTAQFTINLPREENCCETDLVSTDFLNVQLSGAATESMELLE 999
Q E SVQ H E+ P AQFTI ++ ++ + LN+Q+ + E+ E +
Sbjct: 703 QGELSVQGLHAKQESTPIENAQFTIGEGGDKKSSREYILPNEGLNIQIDECSKETTEPMG 762
Query: 1000 ACNGNSFLRRFSVEDRSIISHLFHQWAKKKAFQEPKRLLNKVDFVIDERLRVKKNKHK-- 1057
+C+GNSFLRRF+VEDRS++SHLFH WAKK+AFQEPKRLL+KV F IDERLRV KNKHK
Sbjct: 763 SCDGNSFLRRFNVEDRSVVSHLFHHWAKKQAFQEPKRLLDKVGFAIDERLRVTKNKHKKF 822
Query: 1058 --------------------------------------DVLRALKSCLSSNEAFHYAEYV 1079
D LR LKS L +EAFHYAEY+
Sbjct: 823 LFIFLLMQTGDKICPHAYSLCFLKYKMDEKVHTKYRRSDALRELKSSLKCDEAFHYAEYI 882
Query: 1080 LRWEKIPADQRAHMIREKQEHFQKLRIENSMGSSAPTSKQIAFLRSLGCTEAPASRLHAS 1139
L+WEKIPAD+RAH++R KQEHF KLRIEN+MGSSAPTSKQI++L++LGCT P SRLHAS
Sbjct: 883 LKWEKIPADKRAHLMRMKQEHFLKLRIENAMGSSAPTSKQISYLQNLGCTVVPTSRLHAS 942
Query: 1140 RLIEQYKSL 1148
LIEQYKSL
Sbjct: 943 HLIEQYKSL 951
>gi|449451960|ref|XP_004143728.1| PREDICTED: ATP-dependent DNA helicase PcrA-like [Cucumis sativus]
Length = 1105
Score = 1306 bits (3379), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 689/1164 (59%), Positives = 838/1164 (71%), Gaps = 99/1164 (8%)
Query: 17 INESHRSRVSQNFRAAKPFLDRKRQR------------QAVDFDRQFPNKSRDSNSIPIE 64
I + R+R+S NFRAAK L RKR R P+ SR + E
Sbjct: 9 ITDEERARISHNFRAAKALLARKRPRLFHSHHTISQCSYTTHSANPLPHSSRVGDFNANE 68
Query: 65 SPDSITSVKRVPLAEIPVSTPSLQTINGVKSVVGEFSGISCVLNDLSNERTNGVPLDISD 124
+ KRVPL EI V+TP +NG+ LD
Sbjct: 69 ATVRDNDAKRVPLGEISVNTP----------------------------LSNGLGLDC-- 98
Query: 125 PFITPIKQPEFFNMSESFSMPSPLDDDFDDSILQEIDAICEKSAA-KDVRKAQNSGIYEE 183
TP+K P + +SFS+PS LDDDFD+S L+EIDA+ E+S++ + VR A +S +
Sbjct: 99 -LKTPVKTPTCSGIRDSFSVPSILDDDFDESALEEIDALLEQSSSGRSVRPASDSSFHVT 157
Query: 184 THQNDNSCTHLNASLESVTTNENIRMDISMDLAGDMKSSMEKTDTI----QTIKTQNMPD 239
+ + L+A +SV +I + DL + +S + + I K MP+
Sbjct: 158 NQDHGSYNGGLSADFQSVIGGGSIE---AKDLLCSLDASEPRAELIISDSAMKKIGTMPE 214
Query: 240 EYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKGISPSNILAMTFTTAAASEMRDRIG 299
EYSKYL SLND+Q EAACGD+S PL+I+AGPGSGKGISPS ILAMTFTTAAASEMRDR+G
Sbjct: 215 EYSKYLLSLNDRQREAACGDISIPLMILAGPGSGKGISPSKILAMTFTTAAASEMRDRVG 274
Query: 300 SIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVRLLENEK 359
+ GK AKEL ISTFHSFSLQLCR HAEKLERTS+F IYGHGQQRRAIIEAVRLLENEK
Sbjct: 275 VVAGKKMAKELVISTFHSFSLQLCRLHAEKLERTSDFSIYGHGQQRRAIIEAVRLLENEK 334
Query: 360 ILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDVAKASGK 419
+++ +++L F A + F +F+ AKA G
Sbjct: 335 --SKQKLDSNIL----------GDAFKDVAPMQFKA---------RFQ------AKACGT 367
Query: 420 TPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAI 479
T AE GDE GA +L+NYN IL+SCNALDYHDLISCS+KLL+ FPEV++E QDSWKAI
Sbjct: 368 TSAELLTKGDEAGATVLDNYNDILKSCNALDYHDLISCSLKLLTDFPEVYKECQDSWKAI 427
Query: 480 IVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIR 539
IVDEFQDTS+MQY LLQ+LASH +ITIVGDDDQSIFSFNGADISGFDSFRKDF YKEIR
Sbjct: 428 IVDEFQDTSSMQYKLLQVLASHQQITIVGDDDQSIFSFNGADISGFDSFRKDFPTYKEIR 487
Query: 540 LTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKI 599
L +NYRST CI++AASSLI++N KRC LK+VQTDN GSKI IKEC+NEDAQCAF+IDKI
Sbjct: 488 LNKNYRSTGCIIDAASSLIRNNKKRCPLKSVQTDNLTGSKITIKECNNEDAQCAFVIDKI 547
Query: 600 LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGVAFYRKKVVRAIIAM 659
+E SN AS +GS A+LYRRQ+SGK+FQTAFRERKIPFN+HGVAFYRKKVV+ I+A+
Sbjct: 548 MESTSNCSASK-GFGSFAVLYRRQISGKIFQTAFRERKIPFNVHGVAFYRKKVVKTILAL 606
Query: 660 LRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKISG 719
L+TT P CDDG Y + FKA + EKE+KKR+I+HIDKIST+RKC FI AA D+F +KISG
Sbjct: 607 LKTTFPDCDDGAYHQAFKALMPFEKEDKKRIINHIDKISTVRKCRFIDAARDVFSSKISG 666
Query: 720 TFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKL 779
T KRSQL QGRKVL TLEMIS+LV RE SIS VITSV+NM+P+KYLLEQ+AV + DGGKL
Sbjct: 667 TLKRSQLNQGRKVLSTLEMISRLVLREQSISTVITSVSNMLPEKYLLEQQAVTNVDGGKL 726
Query: 780 LNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEH 839
LNED+D+RSVLQYLL DV+DFLS++ T +E+ + +++ GC + LKAFID+ISERE +
Sbjct: 727 LNEDSDIRSVLQYLLDDVSDFLSSQSTLKEEKKEIVENEPGCHSSLKAFIDHISEREKAN 786
Query: 840 FRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERR 899
F +R +N++SVTLTTIHQSKGLEWDIVF+ KANE+EIPL+HE G E G S+EEERR
Sbjct: 787 FCARRLNNKSSVTLTTIHQSKGLEWDIVFIIKANESEIPLLHESRGITMENGNSIEEERR 846
Query: 900 LLYVAMTRARKKLFILYVMMDANWQLLQPSRFLKEIPHHLREVQ------------AE-- 945
LLYVAMTRAR KLFILYV+MD++WQ+LQPSRFLKEIP H+RE+Q AE
Sbjct: 847 LLYVAMTRARHKLFILYVLMDSDWQILQPSRFLKEIPDHVREIQISFVGALNGQDWAEVS 906
Query: 946 -QSVQDQHENIPEGTAQFTINLPREENCCETDLVSTDFLNVQLSGAATESMELLEACNGN 1004
Q +Q +H + E A + + D+ S D N Q+ E E +E NGN
Sbjct: 907 IQHLQKKHHDALEQNAYMHL---EKSISGHLDVASNDPANNQIDIRDFE--EPIEITNGN 961
Query: 1005 SFLRRFSVEDRSIISHLFHQWAKKKAFQEPKRLLNKVDFVIDERLRVKKNKHKDVLRALK 1064
+FL+RF V++R++ISHLFHQWAKKKAFQ+PKRL++KV FVI+ERLRVKK K K+VLR+LK
Sbjct: 962 NFLKRFDVDNRAVISHLFHQWAKKKAFQDPKRLIDKVGFVIEERLRVKKCKTKEVLRSLK 1021
Query: 1065 SCLSSNEAFHYAEYVLRWEKIPADQRAHMIREKQEHFQKLRIENSMGSSAPTSKQIAFLR 1124
S L+SNEA YAEYVLRWE+IPAD+RA +++EKQEHFQKLRIEN+MGSSA TSKQI++LR
Sbjct: 1022 SSLTSNEALQYAEYVLRWEQIPADKRALLMQEKQEHFQKLRIENAMGSSAATSKQISYLR 1081
Query: 1125 SLGCTEAPASRLHASRLIEQYKSL 1148
+LGCT P SRLHAS LIEQYKSL
Sbjct: 1082 NLGCTITPTSRLHASSLIEQYKSL 1105
>gi|449488705|ref|XP_004158147.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent DNA helicase PcrA-like
[Cucumis sativus]
Length = 1129
Score = 1296 bits (3355), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 688/1191 (57%), Positives = 832/1191 (69%), Gaps = 129/1191 (10%)
Query: 17 INESHRSRVSQNFRAAKPFLDRKRQR------------QAVDFDRQFPNKSRDSNSIPIE 64
I + R+R+S NFRAAK L RKR R P+ SR + E
Sbjct: 9 ITDEERARISHNFRAAKALLARKRPRLFHSHHTISQCSYTTHSANPLPHSSRVGDFNANE 68
Query: 65 SPDSITSVKRVPLAEIPVSTPSLQTINGVKSVVGEFSGISCVLNDLSNERTNGVPLDISD 124
+ KRVPL EI V+TP +NG+ LD
Sbjct: 69 ATVRDNDAKRVPLGEISVNTP----------------------------LSNGLGLDC-- 98
Query: 125 PFITPIKQPEFFNMSESFSMPSPLDDDFDDSILQEIDAICEKSAA-KDVRKAQNSGIYEE 183
TP+K P + +SFS+PS LDDDFD+S L+EIDA+ E+S++ + VR A +S +
Sbjct: 99 -LKTPVKTPTCSGIRDSFSVPSILDDDFDESALEEIDALLEQSSSGRSVRPASDSSFHVT 157
Query: 184 THQNDNSCTHLNASLESVTTNENIRMDISMDLAGDMKSSMEKTDTI----QTIKTQNMPD 239
+ + L+A +SV +I + DL + +S + + I K MP+
Sbjct: 158 NQDHGSYNGGLSADFQSVIGGGSIE---AKDLLCSLDASEPRAELIISDSAMKKIGTMPE 214
Query: 240 EYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKGISPSNILAMTFTTAAASEMRDRIG 299
EY KYL SLND+Q EAACGD+S PL+I+AGPGSGKGISPS ILAMTFTTAAASEMRDR+G
Sbjct: 215 EYXKYLLSLNDRQREAACGDISIPLMILAGPGSGKGISPSKILAMTFTTAAASEMRDRVG 274
Query: 300 SIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVRLLENEK 359
+ GK AKEL ISTFHSFSLQLCR HAEKLERTS+F IYGHGQQRRAIIEAVRLLENEK
Sbjct: 275 VVAGKKMAKELVISTFHSFSLQLCRLHAEKLERTSDFSIYGHGQQRRAIIEAVRLLENEK 334
Query: 360 ILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDVAKASGK 419
+ + L M+ ML R + AKA G
Sbjct: 335 ---------------SNKSWTPTYLVMLLRML---------------PRCSLFQAKACGT 364
Query: 420 TPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAI 479
T AE GDE GA +L+NYN IL+SCNALDYHDLISCS+KLL+ FPEV++E QDSWKAI
Sbjct: 365 TSAELLTKGDEAGATVLDNYNDILKSCNALDYHDLISCSLKLLTDFPEVYKECQDSWKAI 424
Query: 480 IVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIR 539
IVDEFQDTS+MQY LLQ+LASH +ITIVGDDDQSIFSFNGADISGFDSFRKDF YKEIR
Sbjct: 425 IVDEFQDTSSMQYKLLQVLASHQQITIVGDDDQSIFSFNGADISGFDSFRKDFPTYKEIR 484
Query: 540 LTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKI 599
L +NYRST CI++AASSLI++N KRC LK+VQTDN GSKI IKEC+NEDAQCAF+IDKI
Sbjct: 485 LNKNYRSTGCIIDAASSLIRNNXKRCPLKSVQTDNLTGSKITIKECNNEDAQCAFVIDKI 544
Query: 600 LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGVAFYRKKVVRAIIAM 659
+E SN AS +GS A+LYRRQ+SGK+FQTAFRERKIPFN+HGVAFYRKKVV+ I+A+
Sbjct: 545 MESTSNCSASK-GFGSFAVLYRRQISGKIFQTAFRERKIPFNVHGVAFYRKKVVKTILAL 603
Query: 660 LRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKISG 719
L+TT P CDDG Y + FKA + EKE+KKR+I+HIDKIST+RKC FI AA D+F +KISG
Sbjct: 604 LKTTFPDCDDGAYHQAFKALMPFEKEDKKRIINHIDKISTVRKCRFIDAARDVFSSKISG 663
Query: 720 TFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKL 779
T KRSQL QGRKVL TLEMIS+LV RE SIS VITSV+NM+P+KYLLEQ+AV + DGGKL
Sbjct: 664 TLKRSQLNQGRKVLSTLEMISRLVLREQSISTVITSVSNMLPEKYLLEQQAVTNVDGGKL 723
Query: 780 LNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEH 839
LNED+D+RSVLQYLL DV+DFLS++ T +E+ + +++ GC + LKAFID+ISERE +
Sbjct: 724 LNEDSDIRSVLQYLLDDVSDFLSSQSTLKEEKKEIVENEPGCHSSLKAFIDHISEREKAN 783
Query: 840 FRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERR 899
F +R +N++SVTLTTIHQSKGLEWDIVF+ KANE+EIPL+HE G E G S+EEERR
Sbjct: 784 FCARRLNNKSSVTLTTIHQSKGLEWDIVFIIKANESEIPLLHESRGITMENGNSIEEERR 843
Query: 900 LLYVAMTRARKKLFILYVMMDANWQLLQPSRFLKEIPHHLREVQ---------------- 943
LLYVAMTRAR KLFILYV+MD++WQ+LQPSRFLKEIP H+RE+Q
Sbjct: 844 LLYVAMTRARHKLFILYVLMDSDWQILQPSRFLKEIPDHVREIQFCGSFKWTRVNKFSSE 903
Query: 944 -----------------------AE---QSVQDQHENIPEGTAQFTINLPREENCCETDL 977
AE Q +Q +H + E A + + D+
Sbjct: 904 KRSLMTSWDMRGSGEILLGGECWAEVSIQHLQKKHHDALEQNAYMHL---EKSISGHLDV 960
Query: 978 VSTDFLNVQLSGAATESMELLEACNGNSFLRRFSVEDRSIISHLFHQWAKKKAFQEPKRL 1037
S D N Q+ E E +E NGN+FL+RF V++R++ISHLFHQWAKKKAFQ+PKRL
Sbjct: 961 ASNDPANNQIDIRDFE--EPIEITNGNNFLKRFDVDNRAVISHLFHQWAKKKAFQDPKRL 1018
Query: 1038 LNKVDFVIDERLRVKKNKHKDVLRALKSCLSSNEAFHYAEYVLRWEKIPADQRAHMIREK 1097
++KV FVI+ERLRVKK K K+VLR+LKS L+SNEA YAEYVLRWE+IPAD+RA +++EK
Sbjct: 1019 IDKVGFVIEERLRVKKCKTKEVLRSLKSSLTSNEALQYAEYVLRWEQIPADKRALLMQEK 1078
Query: 1098 QEHFQKLRIENSMGSSAPTSKQIAFLRSLGCTEAPASRLHASRLIEQYKSL 1148
QEHFQKLRIEN+MGSSA TSKQI++LR+LGCT P SRLHAS LIEQYKSL
Sbjct: 1079 QEHFQKLRIENAMGSSAATSKQISYLRNLGCTITPTSRLHASSLIEQYKSL 1129
>gi|242045726|ref|XP_002460734.1| hypothetical protein SORBIDRAFT_02g034000 [Sorghum bicolor]
gi|241924111|gb|EER97255.1| hypothetical protein SORBIDRAFT_02g034000 [Sorghum bicolor]
Length = 1185
Score = 1161 bits (3004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/929 (61%), Positives = 717/929 (77%), Gaps = 58/929 (6%)
Query: 238 PDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILA 283
P +Y +YL SLND+Q EAAC D++ PL+IVAGPGSGK GI PSNILA
Sbjct: 297 PKKYYEYLHSLNDRQKEAACNDVAVPLMIVAGPGSGKTSTMVGRVLTLLKEGIPPSNILA 356
Query: 284 MTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQ 343
MTFTTAAASEMR+RIG++VGKA AKE+ ISTFHSF LQLCR+HAEKL RTSEF+IYGHGQ
Sbjct: 357 MTFTTAAASEMRERIGTVVGKAVAKEIAISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQ 416
Query: 344 QRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQY 403
QRRA+IEA RLLEN+K V TT + ++ S K ++
Sbjct: 417 QRRAVIEAERLLENDKNNGVGD------TTKQYDADIKNSF------------KDKAKKW 458
Query: 404 NKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
KF + AKASG+TP ++ GD GA++L +YN ILRSCNALDYHD I+ S+ LL+
Sbjct: 459 QKF----ITQAKASGRTPEDYEMKGDLTGASVLRHYNEILRSCNALDYHDFINSSITLLT 514
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADIS 523
FPEV++E QD W+AI+VDEFQDTSAMQY LL+ILASHN ITIVGD+DQSIFSFNGAD+S
Sbjct: 515 NFPEVYKECQDMWRAIVVDEFQDTSAMQYCLLKILASHNHITIVGDEDQSIFSFNGADVS 574
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
GFDSFR+DF +YKEIRL++NYRSTR IVEAA++LIQ+N KR K V+TDN G KI +K
Sbjct: 575 GFDSFRRDFPDYKEIRLSKNYRSTRAIVEAATALIQNNSKRHHRKLVETDNPSGCKITVK 634
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH 643
ECH+ED+QCAF+IDKI+E S A C++G+IA+LYRRQV+GK FQ +FR RKIPFN+H
Sbjct: 635 ECHSEDSQCAFVIDKIIETTST-TAEGCNFGNIAVLYRRQVTGKAFQVSFRNRKIPFNVH 693
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
GVAFYRKKV++AI+A+LRTTLPGCDDGP+ + FKA L +KEEKK++IDH++KIS R+C
Sbjct: 694 GVAFYRKKVIKAIMAILRTTLPGCDDGPWCQAFKALLPCDKEEKKKIIDHVEKISLAREC 753
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
SFISAA DIF AK+SGTFKRSQ+TQGRKVL TL+ +SKLV RE S+S +I+S +M+PQK
Sbjct: 754 SFISAATDIFSAKVSGTFKRSQITQGRKVLSTLDSLSKLVEREQSVSVIISSAGDMLPQK 813
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
YLLE+RAVVD D GKLLNED+D+RSVLQ+L+ DV+DFLST F+++ E D+ KGC +
Sbjct: 814 YLLEKRAVVDIDNGKLLNEDSDIRSVLQFLMDDVSDFLSTHFSSSVERSKTDE--KGCAS 871
Query: 824 VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
L+AFIDYIS RETE+FR+++ +N+NS+TLTTIHQSKGLEWD+VF+ +AN++EIPL+HE+
Sbjct: 872 TLQAFIDYISLRETENFRSRKEENKNSITLTTIHQSKGLEWDVVFIVQANDSEIPLLHEY 931
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQPSRFLKEIPHHLREVQ 943
N V E G+++EEERRLLYVAMTRARKKL+IL+V +D+N QLLQPSRFL+EIP HL EVQ
Sbjct: 932 NCTVKEAGSTLEEERRLLYVAMTRARKKLYILHVTVDSNRQLLQPSRFLREIPVHLLEVQ 991
Query: 944 AEQSVQDQHE----NIPEGTAQFTINLPREENCCETDLVSTDFLNVQLSGAATESMELLE 999
E++++ E +IP ++ I++ + + + EL +
Sbjct: 992 GEETLRKMPEQPSGDIPFDDSEGNISIGKP---------------IMGQNEVSPYPELAQ 1036
Query: 1000 ACNGNSFLRRFSVEDRSIISHLFHQWAKKKAFQEPKRLLNKVDFVIDERLRVKKNKHKDV 1059
C N FLR+F ++DRS++SH+FH W KK+AFQ PKRLL K+ FVIDERLR K K KDV
Sbjct: 1037 GCLANDFLRKFDIDDRSVVSHIFHNWGKKQAFQNPKRLLEKISFVIDERLRGKGYKRKDV 1096
Query: 1060 LRALKSCLSSNEAFHYAEYVLRWEKIPADQRAHMIREKQEHFQKLRIENSMGSSAPTSKQ 1119
LR LK LS +EA YA+YV++WE+IP ++R+ ++RE+QEHFQK RIENSMGSS PT+KQ
Sbjct: 1097 LRKLKLFLSGDEALGYAQYVIKWEQIPIEKRSQLMRERQEHFQKQRIENSMGSSEPTAKQ 1156
Query: 1120 IAFLRSLGCTEAPASRLHASRLIEQYKSL 1148
I++LR+LGCT P SRLHAS LIE+YKSL
Sbjct: 1157 ISYLRNLGCTITPTSRLHASNLIEKYKSL 1185
>gi|115472169|ref|NP_001059683.1| Os07g0492100 [Oryza sativa Japonica Group]
gi|34393626|dbj|BAC83302.1| putative ATP-dependent DNA helicase [Oryza sativa Japonica Group]
gi|50508450|dbj|BAD30552.1| putative ATP-dependent DNA helicase [Oryza sativa Japonica Group]
gi|113611219|dbj|BAF21597.1| Os07g0492100 [Oryza sativa Japonica Group]
gi|218199642|gb|EEC82069.1| hypothetical protein OsI_26061 [Oryza sativa Indica Group]
Length = 1165
Score = 1158 bits (2995), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/929 (61%), Positives = 714/929 (76%), Gaps = 56/929 (6%)
Query: 237 MPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG--------------ISPSNIL 282
+P +Y +YLQSLND+Q EAAC D++ PL+IVAGPGSGK PSNIL
Sbjct: 276 VPKKYYEYLQSLNDRQREAACSDVTIPLMIVAGPGSGKTSTMVGRVLTLLKEEFPPSNIL 335
Query: 283 AMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHG 342
AMTFTTAAASEMRDRIG++VGKA AKE+ ISTFHSF LQLCR+HAEKL RTSEF+IYG+G
Sbjct: 336 AMTFTTAAASEMRDRIGTVVGKAVAKEIVISTFHSFCLQLCRTHAEKLGRTSEFIIYGNG 395
Query: 343 QQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFK--L 400
QQRRA+IEA RLLE++K + DG +SFK
Sbjct: 396 QQRRAVIEAERLLESDK---NNGLGDANKNCDGDI-----------------KNSFKDKA 435
Query: 401 CQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVK 460
++ KF + AKASG+TP E+ K GD GA+IL +YN ILRSCNALDYHD I+ S+
Sbjct: 436 KKWQKF----VTQAKASGRTPEEYEKKGDLTGASILRHYNEILRSCNALDYHDFINSSIT 491
Query: 461 LLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGA 520
LL+ FPEV+ E +++W+AI+VDEFQDTSAMQY LL+ LASHNRITIVGD+DQSIFSFNGA
Sbjct: 492 LLTKFPEVYDECRNTWQAIVVDEFQDTSAMQYYLLKTLASHNRITIVGDEDQSIFSFNGA 551
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
D+SGFDSFR+DF N+KE+RL++NYRSTR IVEAA++LI +N KR K +TDN G+KI
Sbjct: 552 DVSGFDSFRRDFPNHKEVRLSKNYRSTRAIVEAATALIHNNTKRQSHKLAETDNPSGNKI 611
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
I+KECH+ED+QCAF+IDKI+E S+ C +G IA+LYRRQ++GK FQ +FR RKIPF
Sbjct: 612 IVKECHSEDSQCAFVIDKIIETTSSS-VEGCHFGKIAVLYRRQITGKAFQASFRNRKIPF 670
Query: 641 NIHGVAFYRKKVVRAIIAMLRTTLPGC-DDGPYRRVFKAFLLLEKEEKKRVIDHIDKIST 699
NIHGVAFYRKKV++AI+A+L+TTLPGC DD P+ + FKA L +KEEKK++I HI+KIS
Sbjct: 671 NIHGVAFYRKKVIKAIMAILKTTLPGCDDDAPWHQAFKAILPGDKEEKKKIIHHIEKISL 730
Query: 700 IRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANM 759
RKCSFISAA DIF AK+SGTFKR+Q+TQGRKVL L+ +SKLV RE S+S VI+S +M
Sbjct: 731 ARKCSFISAATDIFSAKVSGTFKRAQITQGRKVLSALDSLSKLVEREQSVSVVISSAGDM 790
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
+PQKYLLE+RA+VD DGGKLLNEDND+RSVLQ+L+ DV+DFLST F+++ + ++ K
Sbjct: 791 LPQKYLLEKRAIVDADGGKLLNEDNDIRSVLQFLMDDVSDFLSTHFSSSVDTSKTEE--K 848
Query: 820 GCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
GC + LKAFIDYIS RETE+FR+++ +N+NS+TLTTIHQSKGLEWD+VF+ +AN++EIPL
Sbjct: 849 GCASTLKAFIDYISLRETENFRSRKEENKNSITLTTIHQSKGLEWDVVFIVQANDSEIPL 908
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQPSRFLKEIPHHL 939
+HE+NG V E G+++EEERRL YVAMTRARKKL+IL+V +D+N QLLQPSRFL+EIP HL
Sbjct: 909 LHEYNGTVKEAGSTLEEERRLFYVAMTRARKKLYILHVTVDSNRQLLQPSRFLREIPAHL 968
Query: 940 REVQAEQSVQDQHENIPEGTAQFTINLPREENCCETDLVSTDFLNVQLSGAATESMELLE 999
EVQ E +V+ PE + P + E +V + + E+ +
Sbjct: 969 LEVQGEGTVR----RTPEQPVNIPFDQPEGDTSVERPMV--------VRNETSPFPEMDQ 1016
Query: 1000 ACNGNSFLRRFSVEDRSIISHLFHQWAKKKAFQEPKRLLNKVDFVIDERLRVKKNKHKDV 1059
C N FL+RF +EDR+IISH+FHQWAKK+AFQ PKRLL+K+ FVIDERLR K K KDV
Sbjct: 1017 PCLANDFLKRFEIEDRAIISHIFHQWAKKQAFQNPKRLLDKIGFVIDERLRGKGYKRKDV 1076
Query: 1060 LRALKSCLSSNEAFHYAEYVLRWEKIPADQRAHMIREKQEHFQKLRIENSMGSSAPTSKQ 1119
L LKS LS +EAF YA+YV++WE+IP D+R+H++RE+QEHFQK RIENSMGSS PT KQ
Sbjct: 1077 LCKLKSFLSGDEAFGYAQYVIKWEQIPIDKRSHLMRERQEHFQKQRIENSMGSSEPTPKQ 1136
Query: 1120 IAFLRSLGCTEAPASRLHASRLIEQYKSL 1148
I++LR+LGCT P SRLHAS LIE+YKSL
Sbjct: 1137 ISYLRNLGCTITPTSRLHASHLIEKYKSL 1165
>gi|357122761|ref|XP_003563083.1| PREDICTED: ATP-dependent DNA helicase pcrA-like [Brachypodium
distachyon]
Length = 1192
Score = 1145 bits (2962), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 577/929 (62%), Positives = 714/929 (76%), Gaps = 58/929 (6%)
Query: 238 PDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILA 283
P +Y +YL SLND+Q EAAC D++ PL+I+AGPGSGK GI PSNILA
Sbjct: 304 PRKYYEYLHSLNDRQREAACSDVTVPLMILAGPGSGKTSTMVGRVLTLLKEGIPPSNILA 363
Query: 284 MTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQ 343
MTFTTAAA+EMRDRIG++VGKA AKE+ ISTFHSF LQLCR+HAEKL RTSEF+IYGHGQ
Sbjct: 364 MTFTTAAAAEMRDRIGAVVGKAVAKEIVISTFHSFCLQLCRNHAEKLGRTSEFIIYGHGQ 423
Query: 344 QRRAIIEAVRLLENEKILVVKRISTDM--LTTDGHFGYMRASLFMMNAMLFFSMSSFK-- 399
QRRA+IEA RLLE++K S D+ H G +SFK
Sbjct: 424 QRRAVIEAERLLEHDK-------SDDLGDAVKQNHEGIK---------------NSFKDK 461
Query: 400 LCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSV 459
++ KF + AK+SG+TP EF K GD GA+IL +YN IL SCNALDYHD I+ S+
Sbjct: 462 AKKWLKF----VTQAKSSGRTPEEFEKKGDLTGASILRHYNEILVSCNALDYHDFINSSI 517
Query: 460 KLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNG 519
LL+ FPEV++E QD+W+AI+VDEFQDTSAMQY LL++LASHN +TIVGDDDQSIFSFNG
Sbjct: 518 TLLTKFPEVYKECQDTWQAIVVDEFQDTSAMQYFLLKVLASHNHLTIVGDDDQSIFSFNG 577
Query: 520 ADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSK 579
ADISGFDSFR+DF N+KEIRL +NYRSTR IVEAA++LI +N KRC K V+TDN GSK
Sbjct: 578 ADISGFDSFRRDFPNHKEIRLNKNYRSTRAIVEAATALIHNNTKRCHHKLVETDNPSGSK 637
Query: 580 IIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIP 639
I +KECH+E++QCAF+IDKI+E S+ A C++G IA+LYRRQV+GK FQ +FR RKIP
Sbjct: 638 ITVKECHSEESQCAFVIDKIIETTSSS-AEGCNFGKIAVLYRRQVTGKAFQASFRNRKIP 696
Query: 640 FNIHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIST 699
FNIHGVAFYRKKV++AI+A+LRTTLP CDDGP+R+ KA L +KEEKK+VIDH++KIS
Sbjct: 697 FNIHGVAFYRKKVIKAIMAILRTTLPACDDGPWRQALKALLPGDKEEKKKVIDHVEKISL 756
Query: 700 IRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANM 759
RKCSFISAA DIF AK+SGTFKR+Q+TQGRKVL TL +SK V RE S+SAVI+S NM
Sbjct: 757 ARKCSFISAATDIFSAKVSGTFKRAQITQGRKVLSTLYSLSKFVEREQSVSAVISSAGNM 816
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
+PQ+YLLE+RAV+D DGGKLLNEDND+RSVLQ+L+ DV+DFLST F+++ E ++ K
Sbjct: 817 LPQQYLLEKRAVIDNDGGKLLNEDNDIRSVLQFLMDDVSDFLSTHFSSSGEICKTEE--K 874
Query: 820 GCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
GC + LKAFIDYIS RETE+FR+++ +N+NS+TLTTIHQSKGLEWD+VF+ +AN++EIPL
Sbjct: 875 GCASTLKAFIDYISLRETENFRSRKEENKNSITLTTIHQSKGLEWDVVFIVQANDSEIPL 934
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQPSRFLKEIPHHL 939
+HE+NG V E G ++EEERRL YVAMTRARKKL+IL+V +D++ QLL PSRFLKEIP HL
Sbjct: 935 LHEYNGTVKEAGNTLEEERRLFYVAMTRARKKLYILHVTVDSHRQLLPPSRFLKEIPIHL 994
Query: 940 REVQAEQSVQDQHENIPEGTAQFTINLPREENCCETDLVSTDFLNVQLSGAATESMELLE 999
+VQ E + HE I+ R E + V + + EL++
Sbjct: 995 LDVQGEGAATKSHEQTTR-----DISFDRAEGEASIEKV------IAEQNETSPYPELMQ 1043
Query: 1000 ACNGNSFLRRFSVEDRSIISHLFHQWAKKKAFQEPKRLLNKVDFVIDERLRVKKNKHKDV 1059
C N FL+RF ++DR+++SH+FH WAKK+AFQ PKRLL+K+ FVIDERLR K K KDV
Sbjct: 1044 TCVANDFLKRFEIDDRAVVSHIFHHWAKKQAFQIPKRLLDKIKFVIDERLRGKGYKRKDV 1103
Query: 1060 LRALKSCLSSNEAFHYAEYVLRWEKIPADQRAHMIREKQEHFQKLRIENSMGSSAPTSKQ 1119
L LKS LS +EA YAEYV++WE+IP D+R+H++RE+QEHFQK RIENSMGSS PT KQ
Sbjct: 1104 LCKLKSLLSDDEALGYAEYVIKWEQIPIDKRSHLMRERQEHFQKKRIENSMGSSEPTPKQ 1163
Query: 1120 IAFLRSLGCTEAPASRLHASRLIEQYKSL 1148
I++LR+LGCT P SRLHAS LIE+YKSL
Sbjct: 1164 ISYLRNLGCTITPTSRLHASHLIEKYKSL 1192
>gi|300245038|gb|ADJ94112.1| UvrD helicase [Hordeum vulgare subsp. vulgare]
Length = 1185
Score = 1144 bits (2959), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/949 (60%), Positives = 716/949 (75%), Gaps = 61/949 (6%)
Query: 216 AGDMKSSMEKTDTIQTIKTQNMPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK- 274
+G+M ME+ + P +Y +YL SLND+Q EA+C D++ PL+IVAGPGSGK
Sbjct: 282 SGEMGLEMEENEGC-------APRKYYEYLHSLNDKQREASCSDVAVPLMIVAGPGSGKT 334
Query: 275 -------------GISPSNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQ 321
GISPSNILAMTFTTAAASEMRDRIG++VGKA AKE+ ISTFHSF LQ
Sbjct: 335 STMVGRVLTLLKEGISPSNILAMTFTTAAASEMRDRIGAVVGKAVAKEIIISTFHSFCLQ 394
Query: 322 LCRSHAEKLERTSEFLIYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMR 381
LCR+HAEKL RTSEF+IYGHGQQRRAI+EA RLLE+ K + + DG
Sbjct: 395 LCRTHAEKLGRTSEFIIYGHGQQRRAIVEAERLLEHGK---SDGLGDAVKQCDGDI---- 447
Query: 382 ASLFMMNAMLFFSMSSFK--LCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENY 439
+SFK ++ KF + AK+SG+TP E+ K GD GA+IL +Y
Sbjct: 448 -------------KNSFKDKAKKWLKF----VTQAKSSGQTPEEYEKKGDLTGASILRHY 490
Query: 440 NGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA 499
N IL SCNALDYHD I+ S+ LL+ FPEV++E Q + +AI+VDEFQDTSAMQY LL++LA
Sbjct: 491 NEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVDEFQDTSAMQYFLLKLLA 550
Query: 500 SHNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQ 559
SHN ITIVGD+DQSIFSFNGAD+SGFDSFR+DF N+KEIRL +NYRSTR IVEAA++LI+
Sbjct: 551 SHNHITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEIRLNKNYRSTRAIVEAATALIR 610
Query: 560 HNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAIL 619
+N RC K V+TDN GSKI +KECH+ED+QCAF+IDKI+E S+ A +G IA+L
Sbjct: 611 NNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFVIDKIIETTSSS-AEGRDFGKIAVL 669
Query: 620 YRRQVSGKVFQTAFRERKIPFNIHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAF 679
YRRQ++GK FQ +FR RKIPFN+HGVAFYRKKV++AI+A+LRTTLPGCDDGP+R+ K
Sbjct: 670 YRRQITGKAFQVSFRNRKIPFNVHGVAFYRKKVIKAIMAILRTTLPGCDDGPWRQALKIL 729
Query: 680 LLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMI 739
L +KEEKK++IDH++KIS RKCSFISAA DIF AK+SGTFKR+Q+TQGRKVL TL +
Sbjct: 730 LPGDKEEKKKIIDHVEKISLARKCSFISAATDIFSAKVSGTFKRAQITQGRKVLSTLYSL 789
Query: 740 SKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTD 799
SK V RE S+SA+I+S NM+PQ+YLLE+RAV+D DGGKLLNEDND+RSVLQ+L+ DV+D
Sbjct: 790 SKFVEREQSVSAIISSAGNMLPQQYLLEKRAVIDNDGGKLLNEDNDIRSVLQFLMDDVSD 849
Query: 800 FLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQS 859
FLST F+++ G ++KGC LKAFIDYIS RETE+FR+++ +N+NS+TLTTIHQS
Sbjct: 850 FLSTHFSSSG--GASQTEEKGCTATLKAFIDYISLRETENFRSRKEENKNSITLTTIHQS 907
Query: 860 KGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMM 919
KGLEWD+VF+ + N++EIPL+HE+NG V E G ++EEERRL YVAMTRARKKL+IL+V +
Sbjct: 908 KGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCTLEEERRLFYVAMTRARKKLYILHVTI 967
Query: 920 DANWQLLQPSRFLKEIPHHLREVQAEQSVQDQHENIPEGTAQFTINLPREENCCETDLVS 979
D++ QLL PSRFL+EIP HL ++Q E + H P G F + E E +
Sbjct: 968 DSHRQLLPPSRFLREIPGHLLDIQGEGAAIKYHGQ-PSGDISF--DHAEGETSTEKPIA- 1023
Query: 980 TDFLNVQLSGAATESMELLEACNGNSFLRRFSVEDRSIISHLFHQWAKKKAFQEPKRLLN 1039
N+ + E M ++C N FL+RF ++DR+++SH+FH WAKK+AFQ PKRLL+
Sbjct: 1024 ----NLNETSPYPEPM---QSCLANDFLKRFEIDDRAVVSHIFHHWAKKQAFQIPKRLLD 1076
Query: 1040 KVDFVIDERLRVKKNKHKDVLRALKSCLSSNEAFHYAEYVLRWEKIPADQRAHMIREKQE 1099
K+ FVIDERLR K K KDVL LKS LS +EA YAEYV++WE+IP D+R+H++RE+QE
Sbjct: 1077 KIKFVIDERLRGKGYKRKDVLCKLKSLLSDDEALGYAEYVIKWEQIPIDKRSHLMRERQE 1136
Query: 1100 HFQKLRIENSMGSSAPTSKQIAFLRSLGCTEAPASRLHASRLIEQYKSL 1148
HFQK RIENSMGSS PT KQI++LRSLGCT P SRLHAS LIE+YKSL
Sbjct: 1137 HFQKQRIENSMGSSEPTPKQISYLRSLGCTITPTSRLHASNLIEKYKSL 1185
>gi|222637066|gb|EEE67198.1| hypothetical protein OsJ_24304 [Oryza sativa Japonica Group]
Length = 1186
Score = 1019 bits (2635), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/979 (54%), Positives = 672/979 (68%), Gaps = 135/979 (13%)
Query: 237 MPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG--------------ISPSNIL 282
+P +Y +YLQSLND+Q EAAC D++ PL+IVAGPGSGK PSNIL
Sbjct: 276 VPKKYYEYLQSLNDRQREAACSDVTIPLMIVAGPGSGKTSTMVGRVLTLLKEEFPPSNIL 335
Query: 283 AMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHG 342
AMTFTTAAASEMRDRIG++VGKA AKE+ ISTFHSF LQLCR+HAEKL RTSEF+IYG+G
Sbjct: 336 AMTFTTAAASEMRDRIGTVVGKAVAKEIVISTFHSFCLQLCRTHAEKLGRTSEFIIYGNG 395
Query: 343 QQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFK--L 400
QQRRA+IEA RLLE++K + DG +SFK
Sbjct: 396 QQRRAVIEAERLLESDK---NNGLGDANKNCDGDI-----------------KNSFKDKA 435
Query: 401 CQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVK 460
++ KF + AKASG+TP E+ K GD GA+IL +YN ILRSCNALDYHD I+ S+
Sbjct: 436 KKWQKF----VTQAKASGRTPEEYEKKGDLTGASILRHYNEILRSCNALDYHDFINSSIT 491
Query: 461 LLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGA 520
LL+ FPEV+ E +++W+AI+VDEFQDTSAMQY LL+ LASHNRITIVGD+DQSIFSFNGA
Sbjct: 492 LLTKFPEVYDECRNTWQAIVVDEFQDTSAMQYYLLKTLASHNRITIVGDEDQSIFSFNGA 551
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
D+SGFDSFR+DF N+KE+RL++NYRSTR IVEAA++LI +N KR K +TDN G+KI
Sbjct: 552 DVSGFDSFRRDFPNHKEVRLSKNYRSTRAIVEAATALIHNNTKRQSHKLAETDNPSGNKI 611
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
I+KECH+ED+QCAF+IDKI+E S+ C +G IA+LYRRQ++GK FQ +FR RKIPF
Sbjct: 612 IVKECHSEDSQCAFVIDKIIETTSSS-VEGCHFGKIAVLYRRQITGKAFQASFRNRKIPF 670
Query: 641 NIHGVAFYRKKVVRAIIAMLRTTLPGCDD-GPYRRVFKAFLLLEKEEKKRVIDHIDKIST 699
NIHGVAFYRKKV++AI+A+L+TTLPGCDD P+ + FKA L +KEEKK++I HI+KIS
Sbjct: 671 NIHGVAFYRKKVIKAIMAILKTTLPGCDDDAPWHQAFKAILPGDKEEKKKIIHHIEKISL 730
Query: 700 IRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANM 759
RKCSFISAA DIF AK+SGTFKR+Q+TQGRKVL L+ +SKLV RE S+S VI+S +M
Sbjct: 731 ARKCSFISAATDIFSAKVSGTFKRAQITQGRKVLSALDSLSKLVEREQSVSVVISSAGDM 790
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
+PQKYLLE+RA+VD DGGKLLNEDND+RSVLQ+L+ DV+DFLST F+++ + ++ K
Sbjct: 791 LPQKYLLEKRAIVDADGGKLLNEDNDIRSVLQFLMDDVSDFLSTHFSSSVDTSKTEE--K 848
Query: 820 GCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
GC + LKAFIDYIS RETE+FR+++ +N+NS+TLTTIHQSKGLEWD+VF+ +AN++EIPL
Sbjct: 849 GCASTLKAFIDYISLRETENFRSRKEENKNSITLTTIHQSKGLEWDVVFIVQANDSEIPL 908
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQPSRFLKEIPHHL 939
+HE+NG V E G+++E LLQPSRFL+EIP HL
Sbjct: 909 LHEYNGTVKEAGSTLE-----------------------------LLQPSRFLREIPAHL 939
Query: 940 REVQAEQSVQDQHENIPEGTAQFTINLPREENCCETDLVSTDFLNVQLSGAATESMELLE 999
EVQ E +V+ PE + P + E +V + + E+ +
Sbjct: 940 LEVQGEGTVR----RTPEQPVNIPFDQPEGDTSVERPMV--------VRNETSPFPEMDQ 987
Query: 1000 ACNGNSFLRRFSVEDRSIISHLFHQWAKKKAFQEPKRLLNK------------------- 1040
C N FL+RF +EDR+IISH+FHQWAKK+AFQ K L +
Sbjct: 988 PCLANDFLKRFEIEDRAIISHIFHQWAKKQAFQNQKGCLIRSQDLRHVSSETVIGIALLL 1047
Query: 1041 -------------VDFVIDERLRVKKNKHKDVLRALKSCLSSNEAFHYAEYV-------L 1080
+ FVIDERLR K K KDVL LKS LS +EAF YA+Y+ L
Sbjct: 1048 YISCSVYLCLPFQIGFVIDERLRGKGYKRKDVLCKLKSFLSGDEAFGYAQYIGFVIDERL 1107
Query: 1081 RWEKIPADQRAHMIRE-----------KQEHFQKLRIENSMGSSAPTSKQIAFLRSLGCT 1129
R + ++ + EHFQK RIENSMGSS PT KQI++LR+LGCT
Sbjct: 1108 RGKGYKRKDVLCKLKSFLSGDEAFGYAQYEHFQKQRIENSMGSSEPTPKQISYLRNLGCT 1167
Query: 1130 EAPASRLHASRLIEQYKSL 1148
P SRLHAS LIE+YKSL
Sbjct: 1168 ITPTSRLHASHLIEKYKSL 1186
>gi|4455255|emb|CAB36754.1| putative protein [Arabidopsis thaliana]
gi|7269362|emb|CAB79421.1| putative protein [Arabidopsis thaliana]
Length = 938
Score = 873 bits (2256), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/1068 (49%), Positives = 653/1068 (61%), Gaps = 172/1068 (16%)
Query: 19 ESHRSRVSQNFRAAKPFLDRKRQ-RQAVDFDRQFPNKSRDSNSIPIESPDSITSVKRVPL 77
E R+SQ+FR+AKP LDRKR A + P + ++S + ES + PL
Sbjct: 14 EYSHGRISQSFRSAKPLLDRKRPIENAPNSSNPLPQRMKES--MDTESVSHNINFNSTPL 71
Query: 78 AEIPVSTPSLQTINGVKSVVGEFSGISCVLN------DLSNERTNGVPLDI-------SD 124
E+ +TP + ++S G C L DL E NG DI S+
Sbjct: 72 MELSANTPYKRLKPEIESYA---DGHPCGLRTPPPRFDLDKEIINGFQTDIYADVGSLSE 128
Query: 125 PFITPIKQPEFFNMSESFSMPSPLDDDFDDSILQEIDAICEKSAAKDVRKAQNSGIYEET 184
F+TP+K+PE +S S S LDDDFDDSIL+EID ICE+SA K + + IY+ T
Sbjct: 129 AFVTPLKEPERVTLSNGCSTSSILDDDFDDSILEEIDLICEQSARKAACQTPTTSIYQ-T 187
Query: 185 HQNDNSCTHLNASLESVTTNENIRMDISMDLAGDMKSSMEKTDTIQTIKT--QNMPDEYS 242
DN + ASL+ E D ++ L D E+T TI +MPDE S
Sbjct: 188 PSKDNKSSDPKASLDFRDV-EKFEPDSNVKLKLD-----EETPTIAADPALLNSMPDECS 241
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKGISPSNILAMTFTTAAASEMRDRIGSIV 302
KY+ SLND+Q +AAC ++STPL+++AGPGSGKG+ PSNILAMTFT AA SEMR+RIG
Sbjct: 242 KYMLSLNDRQRDAACSNISTPLMVIAGPGSGKGLLPSNILAMTFTKAATSEMRERIGKSA 301
Query: 303 GKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVRLLENEKILV 362
GK AK++TISTFHSFSLQLCR HA+KL+RTSEF +YGHGQQRRAIIEAVRL E EK
Sbjct: 302 GKKAAKDITISTFHSFSLQLCRMHADKLQRTSEFSVYGHGQQRRAIIEAVRLYEEEK--- 358
Query: 363 VKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDVAKASGKTPA 422
K S + + G G KASGK+P
Sbjct: 359 -KNGSKTSVPCESGEG---------------------------LNGAGAGAGKASGKSPE 390
Query: 423 EFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVD 482
+ RK+G+EIGA IL NYN IL++C+ALDYHD L+S + ++ + +K
Sbjct: 391 QCRKMGNEIGAKILGNYNDILKACDALDYHD-------LISCSVTLLSDFPEVFK----- 438
Query: 483 EFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTR 542
E QDT I+ D+ Q + + YK +R+
Sbjct: 439 ECQDTWK---------------AIIVDEFQDTST----------------MQYKLLRM-- 465
Query: 543 NYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEH 602
L HN + V D+ +I +KECHNE+AQCA++IDKI+E
Sbjct: 466 --------------LGSHN----HITIVGDDD----QITVKECHNEEAQCAYVIDKIIEI 503
Query: 603 ASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGVAFYRKKVVRAIIAMLRT 662
++G CS+G IAILYRRQVSGKVFQ AFR+RKIPFN+HGVAFYRKKVV+ I+AML+T
Sbjct: 504 TNDGSTPCCSHGDIAILYRRQVSGKVFQNAFRQRKIPFNVHGVAFYRKKVVQVILAMLKT 563
Query: 663 TLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKISGTFK 722
T CDD YRRVFKA L EKEEKKR+I+HI+KIST RKCSFISAA DIF AKISGTFK
Sbjct: 564 TFSECDDASYRRVFKALLPFEKEEKKRIIEHIEKISTSRKCSFISAASDIFNAKISGTFK 623
Query: 723 RSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNE 782
RSQLTQGRKVL TL+M++KLV RE S+SAV+T VANM+PQKYLLEQRAVVD DGGKLLNE
Sbjct: 624 RSQLTQGRKVLQTLDMVAKLVDREQSLSAVVTCVANMIPQKYLLEQRAVVDNDGGKLLNE 683
Query: 783 DNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRT 842
DNDLRSVLQYL+ DV +F+ST T +EE + ++KKGC N L +FI+YISERETE+FR+
Sbjct: 684 DNDLRSVLQYLMDDVAEFISTHCTTTEEEDAI-KEKKGC-NQLHSFINYISERETENFRS 741
Query: 843 QRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLY 902
+R DNENSVTLTTIHQ ANE EIPL+HE NG +E GTS+EEERRLLY
Sbjct: 742 RRRDNENSVTLTTIHQ-------------ANENEIPLLHESNGNASESGTSLEEERRLLY 788
Query: 903 VAMTRARKKLFILYVMMDANWQLLQPSRFLKEIPHHLREVQAEQSVQD---QHENIPEGT 959
VAMTRARKKLF LYV +D+NW Q + SV D HEN+P T
Sbjct: 789 VAMTRARKKLFFLYVTVDSNW-------------------QGDMSVNDCRKVHENLPNKT 829
Query: 960 AQFTINLPREENCCETDLVSTDFLNVQLSGAATESMELLEACNGNSFLR--------RFS 1011
Q + + E+ L D +N+ A+ ES+ A NGN+FL+ RF
Sbjct: 830 EQSVSSFGTDIKHEESKLTDNDVMNIPEDYASEESIAAY-ALNGNNFLKRCRTFIPNRFD 888
Query: 1012 VEDRSIISHLFHQWAKKKAFQEPKRLLNKVDFVIDERLRVKKNKHKDV 1059
VE RS++SHLFH WAKK+AFQEPKRL++KV FVI ERL +KKNKHK V
Sbjct: 889 VEVRSVVSHLFHNWAKKQAFQEPKRLIDKVRFVIGERLAIKKNKHKVV 936
>gi|357440859|ref|XP_003590707.1| ATP-dependent DNA helicase pcrA [Medicago truncatula]
gi|355479755|gb|AES60958.1| ATP-dependent DNA helicase pcrA [Medicago truncatula]
Length = 906
Score = 821 bits (2121), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/662 (64%), Positives = 502/662 (75%), Gaps = 44/662 (6%)
Query: 150 DDFDDSILQEIDAICEKSAAKDVRKAQNSGIYEETHQNDNS-----CTHLNASLESVTTN 204
DDFD+SIL++ID +CE+ +A KA G+ + +N +S CT ++ SL + +
Sbjct: 256 DDFDESILEQIDILCEQKSAV---KAAGQGLDQSCQENVSSESGLVCT-VDMSLATSAVS 311
Query: 205 ENIRMDISMDLAGDMKSSMEKTD---TIQTIKTQNMPDEYSKYLQSLNDQQLEAACGDMS 261
E I + D+ E D T +++ + MP+EYSKYL+SLN++Q EAAC D+S
Sbjct: 312 EGIGSGDMLCFGIDLDHKEEHVDSETTRKSLPSGTMPEEYSKYLKSLNERQREAACTDVS 371
Query: 262 TPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASEMRDRIGSIVGKATA 307
TPL+IVAGPGSGK GISP NILAMTFT AAA+EMR RIG+I GK TA
Sbjct: 372 TPLMIVAGPGSGKTSTMVGRVLMLLNEGISPLNILAMTFTAAAAAEMRKRIGAIAGKQTA 431
Query: 308 KELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVRLLENEKILVVKRIS 367
KELTISTFHSF LQLCRSHAEKL RTSEFLIYG QQR AIIEA RLLENE K +
Sbjct: 432 KELTISTFHSFCLQLCRSHAEKLGRTSEFLIYGQWQQRNAIIEATRLLENE---TSKHKN 488
Query: 368 TDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDVAKASGKTPAEFRKI 427
++L + G F A ++ F + AKASG+T AE+R +
Sbjct: 489 GELLIGEASDGLKTPKQFKDKAK-----------KWQNF----VTQAKASGRTSAEYRDM 533
Query: 428 GDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDT 487
G++IGA ILENY+ IL+SCNA+DYHDLIS SVKLL+ FPEVF+E QDSWKA+++DEFQDT
Sbjct: 534 GNQIGAEILENYSNILKSCNAVDYHDLISYSVKLLTDFPEVFRESQDSWKAVVIDEFQDT 593
Query: 488 SAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRST 547
SAMQY LL+ILASHN+ITI+GDDDQSIFSFNGADISGF SFR DF NYKEIRL +NYRST
Sbjct: 594 SAMQYKLLRILASHNKITIIGDDDQSIFSFNGADISGFISFRNDFPNYKEIRLNKNYRST 653
Query: 548 RCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGP 607
R IVEAA+SLIQ+N KRCQLKNV TDNS GSKII+KECHNEDAQCAFI+DKI E +SN
Sbjct: 654 RYIVEAAASLIQNNAKRCQLKNVLTDNSSGSKIIMKECHNEDAQCAFIVDKISEISSNHS 713
Query: 608 ASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGVAFYRKKVVRAIIAMLRTTLPGC 667
A CSYG+IAILYRR+VSGK FQ AFR+RKIPFNIHGVAFYRKKVV+ II+ML+T LPGC
Sbjct: 714 ADNCSYGNIAILYRRRVSGKAFQMAFRDRKIPFNIHGVAFYRKKVVKTIISMLQTALPGC 773
Query: 668 DDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLT 727
DD Y RVFKA L EK+ KKRVIDHI KISTIRKCSF+SAACDIF AKISGT+KRS LT
Sbjct: 774 DDDSYSRVFKALLPFEKDMKKRVIDHISKISTIRKCSFLSAACDIFSAKISGTYKRSDLT 833
Query: 728 QGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLR 787
GRKVL T+E+ISKLV RE SISA+ITSVANM+P+KYLLEQRA+VD DGG LLNED D+R
Sbjct: 834 HGRKVLTTIEIISKLVHREKSISAIITSVANMIPEKYLLEQRAIVDVDGGTLLNEDCDIR 893
Query: 788 SV 789
SV
Sbjct: 894 SV 895
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 102/236 (43%), Gaps = 64/236 (27%)
Query: 23 SRVSQNFRAAKPFLDRKRQRQAVDFDRQFPNKSRDSNSIPIESPDSITSV---------- 72
R+S F A+KP L +KR + DS+ I SP I S+
Sbjct: 7 GRISAYFSASKPLLPQKR--------------ASDSS---ISSPYQIKSLCDVDGAKGRV 49
Query: 73 ---KRVPLAEIPVSTPSLQTINGVKSVVGEFSGISCVLNDLSNERTNGVPLD-------I 122
KRVPLAE+P++ + NG GE S S V+ S+ RT VP
Sbjct: 50 RVGKRVPLAEVPLNRLH-SSGNG-----GEAS--SDVICCSSSARTVVVPAVSAVKENLC 101
Query: 123 SDPFITPIKQPEFFNMSES---FSMPSPLDDDFDDSILQEIDAICEKSAAKDVRKAQNSG 179
F TP K+ F SES F LDDDFDDSIL++ID +CE+ +A V+ A G
Sbjct: 102 QSNFETPRKESGGFE-SESLDYFYASGLLDDDFDDSILEQIDIMCEEKSA--VKTAGVEG 158
Query: 180 IYEETHQNDNSCTHLNASLESVTTNENIRMDISMDLAGDMKSSMEKTDTIQTIKTQ 235
+ H E V++ N+ ++ M L ++ + D ++I Q
Sbjct: 159 LGHSCH-------------EKVSSEGNVVGNVDMGLGTNVSKDIGNDDLNESILEQ 201
>gi|302818017|ref|XP_002990683.1| hypothetical protein SELMODRAFT_429070 [Selaginella moellendorffii]
gi|300141605|gb|EFJ08315.1| hypothetical protein SELMODRAFT_429070 [Selaginella moellendorffii]
Length = 1291
Score = 813 bits (2100), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/877 (49%), Positives = 567/877 (64%), Gaps = 94/877 (10%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
YL+ LN Q +AA + PLLIVAGPGSGK G+ NIL MTFTTA
Sbjct: 249 YLRKLNVSQRDAALSSIGKPLLIVAGPGSGKTSTMVARILTLLNEGVDSKNILGMTFTTA 308
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM DR+ ++VGK +KEL ISTFHSF LQLCRSHAEKL RTSEFL+YG QQR+A+I
Sbjct: 309 AATEMMDRVAAVVGKEASKELMISTFHSFCLQLCRSHAEKLNRTSEFLVYGASQQRKAVI 368
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
EA RL L + ++ A ++ +F
Sbjct: 369 EATRL---------------ALEATESCDAQKPEVWRERAK-----------KWQRF--- 399
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ AKASG+ + K G+ +GA IL +Y IL SCN+LDYHD I +VKLL+ P+V
Sbjct: 400 -VTQAKASGQDSEQIEKSGNHLGADILRHYERILASCNSLDYHDFIGFAVKLLTDHPDVS 458
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDSFR 529
E ++W ++VDEFQDTS MQY LL++L+ H R+T+VGDDDQSIFSFNGA+ GF +FR
Sbjct: 459 AECHNTWAYVLVDEFQDTSVMQYKLLRLLSLHGRVTVVGDDDQSIFSFNGANSLGFSTFR 518
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
DF N+KE+RL +NYRST CIVEAA +IQ+N C K V+TDN G KI++ EC NE+
Sbjct: 519 NDFPNHKEVRLHQNYRSTGCIVEAARCVIQNNDSGCSAKVVRTDNDFGEKIVVMECRNEE 578
Query: 590 AQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGVAFYR 649
AQCAF++D+ILE AS + + AILYRRQV+GK+FQ+AFR RKIPFN+HGVA YR
Sbjct: 579 AQCAFVVDEILEKASMASDIKPVFANFAILYRRQVTGKIFQSAFRSRKIPFNMHGVAVYR 638
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAA 709
KKVV+ +IA+L T+L RRVFKA +K E K+ +++++K CSF+ AA
Sbjct: 639 KKVVKDVIALLWTSLGRSGTVFERRVFKALYGGDKTETKKAVEYVEKYGKNENCSFLEAA 698
Query: 710 CDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQR 769
IF AK+SGTF R QL+QGRKVL T+EM+ +L +E S+S+++T+V NM+PQ+ E R
Sbjct: 699 EIIFTAKVSGTFSRRQLSQGRKVLTTVEMVKRLAAKEQSLSSLVTAVLNMLPQRRAFESR 758
Query: 770 AVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFI 829
A+VD GGKLLNED D R+VL YLL DV++FL K +EE + + GC +LK F+
Sbjct: 759 AIVDESGGKLLNEDEDCRTVLDYLLDDVSEFL-CKHIRLQEEVKPNSRQLGCSVLLKDFL 817
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
D+I+ RETE+FRT+R +N NSVTLTT+HQSKGLEWD VF+ KANE E PL+HE
Sbjct: 818 DHITVRETENFRTRREENHNSVTLTTMHQSKGLEWDSVFIVKANELETPLLHE------- 870
Query: 890 KGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQPSRFLKEIPHHLREVQAEQSVQ 949
+S+EEERRL YVAMTRARKKL+I+Y++++ Q+LQPSRFL E+P
Sbjct: 871 -SSSLEEERRLFYVAMTRARKKLYIVYIVVNPQRQILQPSRFLSELPR------------ 917
Query: 950 DQHENIPEGTAQFTINLPREENCCETDLVSTDFLNVQLSGAATESMELLEACNGNSFLRR 1009
QH E T+ L+V A T+S ++FLR
Sbjct: 918 -QHLQF-EARGYLTV------------------LDVLDENALTDS---------SAFLRS 948
Query: 1010 FSVEDRSIISHLFHQWAKKKAFQEPKRLLNKVDFVIDERLRVKKNKHKDVLRALKSCLSS 1069
F++E RS I+ +FHQWAKK AFQ+PKRLL KV IDERLR K K+KD L ALK L+
Sbjct: 949 FNIEARSTIASIFHQWAKKSAFQDPKRLLMKVGLAIDERLRSKTAKNKDTLHALKRSLTD 1008
Query: 1070 NEAFHYAEYVLRWEKIPADQRAHMIREKQEHFQKLRI 1106
+ AF YA+ +++WEK+PA +R+ + E+Q+ +L I
Sbjct: 1009 DAAFAYADQIVKWEKLPAHERSVHMAERQQQLNRLWI 1045
>gi|302771199|ref|XP_002969018.1| hypothetical protein SELMODRAFT_409804 [Selaginella moellendorffii]
gi|300163523|gb|EFJ30134.1| hypothetical protein SELMODRAFT_409804 [Selaginella moellendorffii]
Length = 1196
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/877 (48%), Positives = 562/877 (64%), Gaps = 98/877 (11%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
YL+ LN Q +AA ++ PLLIVAGPGSGK G+ NIL MTFTTA
Sbjct: 259 YLRKLNVSQRDAALSNIDKPLLIVAGPGSGKTSTMVARILTLLNEGVDSKNILGMTFTTA 318
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM DR+ ++VGK +KEL ISTFHSF LQLCRSHAEKL RTSEFL+YG QQR+A+
Sbjct: 319 AATEMMDRVAAVVGKEASKELMISTFHSFCLQLCRSHAEKLNRTSEFLVYGASQQRKAV- 377
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+E ++ + S D + ++ A ++ +F
Sbjct: 378 -----IEATRLALEATESCDA---------QKPEVWRERAK-----------KWQQF--- 409
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
V + K R++ AAIL +Y IL SCN+LDYHD I +VKLL+ P+V
Sbjct: 410 ---VTQVVSKIIMICRRLRILSQAAILRHYERILASCNSLDYHDFIGFAVKLLTDHPDVL 466
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDSFR 529
E + W ++VDEFQDTS MQY LL++L+ H R+T+VGDDDQSIFSFNGA+ GF +FR
Sbjct: 467 AECHNIWAYVLVDEFQDTSVMQYKLLRLLSLHGRVTVVGDDDQSIFSFNGANSLGFSTFR 526
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
DF N+KE+RL +NYRST CIVEAA +IQHN C K V+TDN G KI++ EC NE+
Sbjct: 527 NDFPNHKEVRLHQNYRSTGCIVEAARCVIQHNDSGCSAKVVRTDNDFGEKIVVMECRNEE 586
Query: 590 AQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGVAFYR 649
AQCAF++D+ILE AS + + AILYRRQV+GK+FQ+AFR RKIPFN+HGVA YR
Sbjct: 587 AQCAFVVDEILEKASIASDIKPVFANFAILYRRQVTGKIFQSAFRSRKIPFNMHGVAVYR 646
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAA 709
KKVV+ +IA+L T+L RRVFKA +K E K+ +++++K + KCSF+ AA
Sbjct: 647 KKVVKDVIALLWTSLGRSGTVFERRVFKALYGGDKTETKKAVEYVEKYAKNEKCSFLEAA 706
Query: 710 CDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ--KYLLE 767
IF AK+SGTF R QL+QGRKVL T+EM+ +L +E S+S+++T+V NM+PQ + E
Sbjct: 707 EIIFTAKVSGTFSRRQLSQGRKVLTTVEMVKRLAAKEQSLSSLVTAVLNMLPQVRRRAFE 766
Query: 768 QRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKA 827
RAVVD GGKLLNED D R+VL YLL DV++FL K +EE + + GC +LK
Sbjct: 767 SRAVVDESGGKLLNEDEDCRTVLDYLLDDVSEFL-CKHIRLQEEVKPNSRQLGCSVLLKD 825
Query: 828 FIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAV 887
F+D+I+ RETE+FRT+R +N NSVTLTT+HQSKGLEWD VF+ KAN+ E PL+HE
Sbjct: 826 FLDHITVRETENFRTRREENHNSVTLTTMHQSKGLEWDSVFIVKANDMETPLLHE----- 880
Query: 888 NEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQPSRFLKEIPHHLREVQAEQS 947
+S+EEERRL YVAMTRARKKL+I+Y+++ Q+LQPSRFL E+P
Sbjct: 881 ---SSSLEEERRLFYVAMTRARKKLYIVYIVVSPQRQILQPSRFLSELPR---------- 927
Query: 948 VQDQHENIPEGTAQFTINLPREENCCETDLVSTDFLNVQLSGAATESMELLEACNGNSFL 1007
QH E T+ L+V A T+S ++FL
Sbjct: 928 ---QHLQF-EARGYLTV------------------LDVLDENALTDS---------SAFL 956
Query: 1008 RRFSVEDRSIISHLFHQWAKKKAFQEPKRLLNKVDFVIDERLRVKKNKHKDVLRALKSCL 1067
R F++E RS I+ +FHQWAKK AFQ+PKRLL KV IDERLR K K+KD L ALK L
Sbjct: 957 RSFNIEARSTIASIFHQWAKKSAFQDPKRLLMKVGLAIDERLRSKTAKNKDTLHALKRSL 1016
Query: 1068 SSNEAFHYAEYVLRWEKIPADQRAHMIREKQEHFQKL 1104
+ + AF YA+ +++WEK+PA +R+ + E+Q+ +L
Sbjct: 1017 TDDAAFAYADQIVKWEKLPAHERSVHMAERQQQLNRL 1053
>gi|326517054|dbj|BAJ96519.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 774
Score = 627 bits (1617), Expect = e-176, Method: Compositional matrix adjust.
Identities = 317/522 (60%), Positives = 393/522 (75%), Gaps = 44/522 (8%)
Query: 216 AGDMKSSMEKTDTIQTIKTQNMPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK- 274
+G+M ME+ + P +Y +YL SLND+Q EA+C D++ PL+IVAGPGSGK
Sbjct: 282 SGEMGLEMEENEGC-------APRKYYEYLHSLNDKQREASCSDVAVPLMIVAGPGSGKT 334
Query: 275 -------------GISPSNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQ 321
GISPSNILAMTFTTAAASEMRDRIG++VGKA AKE+ ISTFHSF LQ
Sbjct: 335 STMVGRVLTLLKEGISPSNILAMTFTTAAASEMRDRIGAVVGKAVAKEIIISTFHSFCLQ 394
Query: 322 LCRSHAEKLERTSEFLIYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMR 381
LCR+HAEKL RTSEF+IYGHGQQRRAI+EA RLLE+ K +DG +
Sbjct: 395 LCRTHAEKLGRTSEFIIYGHGQQRRAIVEAERLLEHGK-------------SDG----LG 437
Query: 382 ASLFMMNAMLFFSMSSFKLCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNG 441
++ + + S K ++ KF + AK+SG+TP E+ K GD GA+IL +YN
Sbjct: 438 DAVKQCDGDIKNSFKD-KAKKWLKF----VTQAKSSGQTPEEYEKKGDLTGASILRHYNE 492
Query: 442 ILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH 501
IL SCNALDYHD I+ S+ LL+ FPEV++E Q + +AI+VDEFQDTSAMQY LL++LASH
Sbjct: 493 ILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVDEFQDTSAMQYFLLKLLASH 552
Query: 502 NRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHN 561
N ITIVGD+DQSIFSFNGAD+SGFDSFR+DF N+KEIRL +NYRSTR IVEAA++LI++N
Sbjct: 553 NHITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEIRLNKNYRSTRAIVEAATALIRNN 612
Query: 562 VKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYR 621
RC K V+TDN GSKI +KECH+ED+QCAF+IDKI+E S+ A +G IA+LYR
Sbjct: 613 TNRCHHKLVETDNPSGSKITVKECHSEDSQCAFVIDKIIETTSSS-AEGRDFGKIAVLYR 671
Query: 622 RQVSGKVFQTAFRERKIPFNIHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLL 681
RQ++GK FQ +FR RKIPFN+HGVAFYRKKV++AI+A+LRTTLPGCDDGP+R+ K L
Sbjct: 672 RQITGKAFQVSFRNRKIPFNVHGVAFYRKKVIKAIMAILRTTLPGCDDGPWRQALKILLP 731
Query: 682 LEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKISGTFKR 723
+KEEKK++IDH++KIS RKCSFISAA DIF AK+SGTFKR
Sbjct: 732 GDKEEKKKIIDHVEKISLARKCSFISAATDIFSAKVSGTFKR 773
>gi|414590344|tpg|DAA40915.1| TPA: hypothetical protein ZEAMMB73_602056 [Zea mays]
Length = 439
Score = 580 bits (1495), Expect = e-162, Method: Compositional matrix adjust.
Identities = 284/446 (63%), Positives = 352/446 (78%), Gaps = 23/446 (5%)
Query: 274 KGISPSNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERT 333
+GI P NILAMTFTTAAASEMR+RIG++VGKA AK++ ISTFHSF LQLCR+HAEKL RT
Sbjct: 11 EGIPPPNILAMTFTTAAASEMRERIGTVVGKAVAKDIAISTFHSFCLQLCRTHAEKLGRT 70
Query: 334 SEFLIYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFF 393
SEF+IYGHGQQRRA+IE RLLEN+K V TT + G ++ S
Sbjct: 71 SEFIIYGHGQQRRALIETERLLENDKNNGVGD------TTKQYDGDIKNSF--------- 115
Query: 394 SMSSFKLCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHD 453
K ++ KF + AKASG+TP ++ K GD GA++L +YN ILRSCNALDYHD
Sbjct: 116 ---KDKAKKWQKF----ITQAKASGRTPEDYEKKGDLTGASVLRHYNEILRSCNALDYHD 168
Query: 454 LISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQS 513
I+ S+ LL+ FPEV++E QD W+AI+VDEFQDTSAMQY LL+ILASHN ITIVGD+DQS
Sbjct: 169 FINSSITLLTNFPEVYKECQDMWRAIVVDEFQDTSAMQYCLLKILASHNHITIVGDEDQS 228
Query: 514 IFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTD 573
IFSFNGAD+SGFDSFRKDF ++KEIRL++NYRSTR IVEAA++LIQ+N KR + V+TD
Sbjct: 229 IFSFNGADVSGFDSFRKDFPDHKEIRLSKNYRSTRAIVEAATALIQNNTKRHHPRLVETD 288
Query: 574 NSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
N G KI +KECH+ED+QCAF+IDKI+E ++G A C++G+IA+LYRRQ++GK FQ +F
Sbjct: 289 NPSGCKITVKECHSEDSQCAFVIDKIIE-ITSGTAEGCNFGNIAVLYRRQITGKAFQVSF 347
Query: 634 RERKIPFNIHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH 693
R RKIPFNIHGVAFYRKKV++AI+A+LRTTLPGCDDGP+R+ FKA L +KEEKK++I H
Sbjct: 348 RNRKIPFNIHGVAFYRKKVIKAIMAILRTTLPGCDDGPWRQAFKALLPGDKEEKKKIIYH 407
Query: 694 IDKISTIRKCSFISAACDIFGAKISG 719
+ KIS R CSF++AA DIF AK+S
Sbjct: 408 VQKISLARTCSFLTAASDIFSAKVSA 433
>gi|168006903|ref|XP_001756148.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692658|gb|EDQ79014.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 699
Score = 563 bits (1451), Expect = e-157, Method: Compositional matrix adjust.
Identities = 348/834 (41%), Positives = 489/834 (58%), Gaps = 156/834 (18%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGKGISPSNILAMTFTTAAASEMRDRIGSIVG 303
+L+ LND Q EAA D PLLI+AGPGSGKGI ILAMTFTTAAA+EMR R+ G
Sbjct: 1 HLKKLNDSQREAALSDTLKPLLILAGPGSGKGIEAKCILAMTFTTAAATEMRQRVAVATG 60
Query: 304 KATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVRLLENEKILVV 363
KA +KELTISTFHSF LQLCR+H +KL R++EFL+YGHGQQRRA+IEA RL
Sbjct: 61 KAISKELTISTFHSFCLQLCRAHVDKLGRSAEFLVYGHGQQRRAVIEATRL--------- 111
Query: 364 KRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDVAKASGKTPAE 423
+ ++ T G + S+ +G AK++G+T +
Sbjct: 112 --ATIEIQTGQGESAEIDTSI-----------------------TEGS--AKSAGRTSLD 144
Query: 424 FRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDE 483
+ K+G+ +GA++L +Y L +C+A+DYHD IS +V LL +PE ++DE
Sbjct: 145 YEKMGNAVGASVLRHYEATLAACDAMDYHDFISFAVFLLEKYPE------------VLDE 192
Query: 484 FQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRN 543
Q T ++ D+ Q D+ R + Y+ +RL
Sbjct: 193 CQKTWT---------------CVLVDEFQ-------------DTSR---MQYRFLRL--- 218
Query: 544 YRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHA 603
L HN ++ V D+ +I + EC E A+C+F++D IL +A
Sbjct: 219 -------------LASHN----RVTIVGDDD----QIAVMECRTEAAECSFVVDSILTNA 257
Query: 604 SNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGVAFYRKKVVRAIIAMLRTT 663
+ +S ++G IA+LYRRQV+G++FQ+AFR RKIPFN+HGVAFYRKK+++++I+MLRT
Sbjct: 258 AGQGSSNPTFGGIAVLYRRQVTGRMFQSAFRSRKIPFNVHGVAFYRKKIIKSVISMLRTV 317
Query: 664 LPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKISGTFKR 723
LPG D +RRV KA +K E K++I+++DK++ SF AA IF AK+SGTF R
Sbjct: 318 LPGNTDIYWRRVLKALYSGDKSECKKIIEYVDKVAKSSNTSFHQAAQTIFTAKVSGTFSR 377
Query: 724 SQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNED 783
QL GR+VL ++ M+ L +E S+S ++T+V N++PQ+ + RAVVD DGGKLLNED
Sbjct: 378 KQLALGRRVLTSVNMVHCLAHKERSLSGLVTAVVNLLPQRPVFNSRAVVDEDGGKLLNED 437
Query: 784 NDLRSVLQYLLADVTDFLS---TKFTAAKEE-----GNVDQDKKGCINVLKAFIDYISER 835
+D R+VL+Y L DV++FLS + F+ E+ G V Q++ GC+++LKAF+D++S R
Sbjct: 438 DDPRTVLEYFLDDVSEFLSNFCSSFSQCDEDDSIVCGQVPQEEGGCLSILKAFLDHLSSR 497
Query: 836 ETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVE 895
E E+F+ ++ DN+NSVTLTT+HQ AN+TE PL++E G V + S+E
Sbjct: 498 EAENFQQRKQDNKNSVTLTTMHQ-------------ANDTETPLLNEGKGQVADDSCSIE 544
Query: 896 EERRLLYVAMTRARKKLFILYVMMDANWQLLQPSRFLKEIPHHLREVQAEQSVQDQHENI 955
EERRL YVAMTRARKKL+I YV+ D+ L+ R++ EI L + A S + N
Sbjct: 545 EERRLFYVAMTRARKKLYICYVVTDS----LRQVRYI-EIKMCLYDHCATPSTASGN-NA 598
Query: 956 PEGT------AQFTIN-----LPREENCCETDLVSTDFLNVQLSGAATESMELLEACNGN 1004
E T + +N EE CE N +G LE+C
Sbjct: 599 TESTVLQDSAGRVDLNDVHNIFASEEGACEK-------TNANRNGD-------LESCFTV 644
Query: 1005 SF-LRRFSVEDRSIISHLFHQWAKKKAFQEPKRLLNKVDFVIDERLRVKKNKHK 1057
L RF++E RS ++ LF+ WA+K AFQ+PKRLL+KV FV+DERLR KK K+K
Sbjct: 645 VINLCRFNMEARSTVAALFNSWARKPAFQDPKRLLSKVGFVVDERLRNKKTKNK 698
>gi|357440861|ref|XP_003590708.1| ATP-dependent DNA helicase pcrA [Medicago truncatula]
gi|355479756|gb|AES60959.1| ATP-dependent DNA helicase pcrA [Medicago truncatula]
Length = 339
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 222/335 (66%), Positives = 267/335 (79%), Gaps = 5/335 (1%)
Query: 819 KGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
KGCI LKAFIDY+ ERE E+FR +R DNENSVTLTTIHQ+KGLEWDIVF+ KANE+EIP
Sbjct: 5 KGCIFTLKAFIDYLFEREKENFRARRKDNENSVTLTTIHQAKGLEWDIVFIVKANESEIP 64
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQPSRFLKEIPHH 938
L+H+F G V + VEEERRLLYVAMTRAR+KLF+LYVM+D+NWQ+LQPSRFLKEIPHH
Sbjct: 65 LLHDFKGVVKDTAAIVEEERRLLYVAMTRARQKLFMLYVMVDSNWQMLQPSRFLKEIPHH 124
Query: 939 LREVQAE---QSVQDQHENIPEGTAQFTINLPREENCCETDL--VSTDFLNVQLSGAATE 993
L E Q + Q +Q + E + T T +L ++ E DL V + LN S A++E
Sbjct: 125 LLEFQGDINMQELQIKREGHQKETTCCTTDLLIKKQQSEADLDPVPNNLLNNHFSEASSE 184
Query: 994 SMELLEACNGNSFLRRFSVEDRSIISHLFHQWAKKKAFQEPKRLLNKVDFVIDERLRVKK 1053
E EA NGN F+RRF VEDRS++SH+FH+WAKKKAFQ+PKRLL+KV FVIDERLR KK
Sbjct: 185 LAEFAEANNGNDFIRRFDVEDRSVVSHIFHKWAKKKAFQDPKRLLDKVGFVIDERLRQKK 244
Query: 1054 NKHKDVLRALKSCLSSNEAFHYAEYVLRWEKIPADQRAHMIREKQEHFQKLRIENSMGSS 1113
NKHKD+L +LKS LS +EA YA+YVLRWE+IPAD+RAH++REKQEHF KL+IEN+MGS+
Sbjct: 245 NKHKDLLNSLKSSLSCDEAMQYAQYVLRWEQIPADKRAHLMREKQEHFLKLKIENAMGSA 304
Query: 1114 APTSKQIAFLRSLGCTEAPASRLHASRLIEQYKSL 1148
PT KQI++L+ LGCT P SRLHAS LIEQYKSL
Sbjct: 305 TPTDKQISYLKKLGCTMTPTSRLHASHLIEQYKSL 339
>gi|147864602|emb|CAN81554.1| hypothetical protein VITISV_028620 [Vitis vinifera]
Length = 267
Score = 347 bits (890), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 168/244 (68%), Positives = 196/244 (80%), Gaps = 25/244 (10%)
Query: 414 AKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQ 473
AKASGKTP E R +GDEIGA+IL NY+ ILR+CNALDYHDLISCSVKLLS FPEVF+E Q
Sbjct: 33 AKASGKTPEECRNMGDEIGASILGNYSKILRTCNALDYHDLISCSVKLLSDFPEVFRECQ 92
Query: 474 DSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDSFRKDFL 533
+SWKA+++DEFQDTSAMQY LL+ILASHNRITIVGD+DQ
Sbjct: 93 ESWKAVVIDEFQDTSAMQYCLLRILASHNRITIVGDEDQ--------------------- 131
Query: 534 NYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCA 593
IRL +NYRSTRCI+EAASSLIQ+N+KRCQ K V TDNS GS++ IKECH+E+AQCA
Sbjct: 132 ----IRLNKNYRSTRCILEAASSLIQNNMKRCQSKKVLTDNSTGSRVTIKECHSEEAQCA 187
Query: 594 FIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGVAFYRKKVV 653
F++DKILE S+ + S+GS+AILYRRQVSGKVFQTAFR+RKIPFNIHGVAFYRKKV+
Sbjct: 188 FVVDKILEITSDDSVAKYSFGSVAILYRRQVSGKVFQTAFRDRKIPFNIHGVAFYRKKVI 247
Query: 654 RAII 657
+I
Sbjct: 248 NILI 251
>gi|414590345|tpg|DAA40916.1| TPA: hypothetical protein ZEAMMB73_444211 [Zea mays]
gi|414590346|tpg|DAA40917.1| TPA: hypothetical protein ZEAMMB73_444211 [Zea mays]
Length = 233
Score = 282 bits (721), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 141/244 (57%), Positives = 179/244 (73%), Gaps = 11/244 (4%)
Query: 905 MTRARKKLFILYVMMDANWQLLQPSRFLKEIPHHLREVQAEQSVQDQHENIPEGTAQFTI 964
MTRARKKL+IL+V +D+N QLLQPSRFL+EIP HL EVQ E+ ++ E P G
Sbjct: 1 MTRARKKLYILHVTIDSNRQLLQPSRFLREIPDHLLEVQGEEPLRKMPER-PSG------ 53
Query: 965 NLPREENCCETDLVSTDFLNVQLSGAATESMELLEACNGNSFLRRFSVEDRSIISHLFHQ 1024
++P +++ +T + + A+ E +AC N FLRRF ++DRS++SH+FH
Sbjct: 54 DVPFDDSEVDTSIGKP----IMGPNEASSYPEQAQACLANDFLRRFDIDDRSVVSHIFHH 109
Query: 1025 WAKKKAFQEPKRLLNKVDFVIDERLRVKKNKHKDVLRALKSCLSSNEAFHYAEYVLRWEK 1084
W KK+AFQ PKRLL K+ FVIDERLR K K KDVLR LKS LS +EA YA+YV++WE+
Sbjct: 110 WGKKQAFQNPKRLLEKISFVIDERLRGKGYKRKDVLRKLKSFLSGDEALGYAQYVIKWEQ 169
Query: 1085 IPADQRAHMIREKQEHFQKLRIENSMGSSAPTSKQIAFLRSLGCTEAPASRLHASRLIEQ 1144
IP ++R H+IRE+QEHFQK RIENSMGSS PT+KQI++LRSLGCT P SRLHAS LIE+
Sbjct: 170 IPIEKRNHLIRERQEHFQKQRIENSMGSSEPTAKQISYLRSLGCTITPTSRLHASHLIEK 229
Query: 1145 YKSL 1148
YKSL
Sbjct: 230 YKSL 233
>gi|111022536|ref|YP_705508.1| ATP-dependent DNA helicase [Rhodococcus jostii RHA1]
gi|110822066|gb|ABG97350.1| probable ATP-dependent DNA helicase [Rhodococcus jostii RHA1]
Length = 828
Score = 272 bits (695), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 233/746 (31%), Positives = 348/746 (46%), Gaps = 111/746 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
LQ LN QQ EA +PLLIVAG GSGK G+ P ILA+TFT
Sbjct: 31 LQGLNPQQREAVV-HAGSPLLIVAGAGSGKTAVLTRRIAYLLAERGVMPGQILAITFTNK 89
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EMR+R+ +VG A + +STFHS +++ R+ A L S F IY RR +
Sbjct: 90 AAAEMRERVAHLVGP-RANSMWVSTFHSSCVRILRAQAALLPGLNSNFSIYDADDSRRLL 148
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
++ + + KR S +L T H ++ L
Sbjct: 149 T----MIAKDLNIDTKRYSARLLAT--HISNLKNELV----------------------- 179
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D + + K PAE ++ A + +Y LRS NALD+ DLI +V +L FP+V
Sbjct: 180 DPDQASADADKDPAELPRLI----AKVYGHYQQRLRSANALDFDDLIGETVAMLQAFPQV 235
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQIL---------ASHN----RITIVGDDDQSIF 515
+ Y+ ++ ++VDE+QDT+ QY L++ L A H + +VGD DQSI+
Sbjct: 236 AEYYRRRFRHVLVDEYQDTNHAQYMLVRELVGGTADGEDADHRVAPAELCVVGDADQSIY 295
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I + F +D+ + + I L +NYRST+ I+ AA+S+I N R + K + TD+
Sbjct: 296 AFRGATIRNIEEFERDYPDARTILLEQNYRSTQNILSAANSVISKNTGRRE-KRLWTDSG 354
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G I NE + +F+ +I + +G A +G +A+ YR S + + F
Sbjct: 355 VGELITGYVADNEHDEASFVASEIDKLVDSGDA---KFGDVAVFYRTNNSSRALEEIFIR 411
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY +K VR I+A LR D RR+ ++ + D
Sbjct: 412 LGVPYKVVGGVRFYERKEVRDIVAYLRVLANENDTVSLRRILNT-------PRRGIGDRA 464
Query: 695 DKISTI----RKCSFISAACDIFGAKISGTFKRSQ--------LTQGRKVLLTLEMISKL 742
+ + R SF A D ++ RSQ L G +VLL E +
Sbjct: 465 EACVAVHSEQRGISFAEALRDGGEGRVPLLNTRSQKAIASFLELMDGLRVLLPPETTADD 524
Query: 743 VRREPSISAVITSVANMVPQK--YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDF 800
V P I V V ++ Y E A D G L+ N+L SV + +D +
Sbjct: 525 V--VPDQLGDIGDVVEAVLERTGYRAELAASSDPQDGARLDNLNELVSVAREFSSDARN- 581
Query: 801 LSTKFTAAKEEGNVD-QDKKGCINVLKAFIDYISERETEHFRTQRHDN-ENSVTLTTIHQ 858
+ E+G+VD +D + L AF++ +S Q DN E VTL T+H
Sbjct: 582 -AAGLVEPPEDGDVDARDGEPDPGSLAAFLERVSLVADSD---QLPDNDEGVVTLMTLHT 637
Query: 859 SKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM 918
+KGLE+ +VFV + + P + T + EERRL YV +TRAR++L++ +
Sbjct: 638 AKGLEFPVVFVTGWEDGQFPHMRALGDP-----TELSEERRLAYVGITRARQRLYLTRAV 692
Query: 919 MDANWQLLQP-----SRFLKEIPHHL 939
M + W QP SRFL+EIP L
Sbjct: 693 MRSAWG--QPIQNPESRFLQEIPSDL 716
>gi|422508680|ref|ZP_16584839.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL046PA2]
gi|313817909|gb|EFS55623.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL046PA2]
Length = 810
Score = 271 bits (694), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 221/731 (30%), Positives = 342/731 (46%), Gaps = 96/731 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN+ Q EA +P+L+VAG GSGK G+ P +ILA+TFT
Sbjct: 42 LVDLNEPQREAVL-HAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTNK 100
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM+ R+ +VG AK + +STFHS ++++ R+ ++L + F IY +R I
Sbjct: 101 AAAEMKARVVDLVGN-RAKPMWVSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLIT 159
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++T D + ++ F + + K E
Sbjct: 160 --------------------LVTRDQN----------LDPKKFQPRAIMNWISHQKNELI 189
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D A A+ K+ D I + Y LR+ NALD+ DLI C+V +L FPEV
Sbjct: 190 APDQAVAAAKSG------NDRINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPEVR 243
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN--------------RITIVGDDDQSIF 515
++Y+ ++ ++VDE+QDT+ QY ++ L + + +VGD DQSI+
Sbjct: 244 EQYRRRFRHVLVDEYQDTNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIY 303
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I F KDF + I L +NYRST+ I+ AA++LI+ N+ R KN+ TD
Sbjct: 304 AFRGATIRNIIDFEKDFPGARTILLEQNYRSTQTILTAANNLIKVNLNRPA-KNLWTDQG 362
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G KI+ E + A++ +I E G SYG +A+ YR + F+ F
Sbjct: 363 DGDKIVGYVADTEHDEAAWVARRIDELVDEGR---TSYGQVAVFYRTNAQSRAFEDVFIR 419
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY +K VR ++ LR DD RR+ + R +
Sbjct: 420 TGLPYRVVGGVRFYERKEVRDAVSYLRAIANPSDDVSLRRILNT---PRRGIGARAEAAV 476
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+ +T R+ SF A I +I G RS + Q R + ++ +V + +
Sbjct: 477 EMFATARRISFWEALKRI--DEIDGLATRS-VNQIRAFVSLMDDHIAMVGQGKRADEIAN 533
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
S+ + Y+ E D +L +L SV Q +A V + A E+GNV
Sbjct: 534 SI--LKESGYITELENSKDPQDETMLENLVELVSVAQEFVARVH---AVDIDEA-EQGNV 587
Query: 815 DQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+ + + L AF++ I+ +++ D++ VTL T+H +KGLE+D VF+
Sbjct: 588 EDLELSGDDSLPAFLEQIALVADSDQVPA---DSDGVVTLMTLHTAKGLEFDTVFITGFE 644
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSR 930
+ P + A T + EERRL YV +TRARK+LF+ + W Q PSR
Sbjct: 645 DGVFPHMRSLADA-----TELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSR 699
Query: 931 FLKEIPHHLRE 941
F+ EIP HL E
Sbjct: 700 FIDEIPEHLIE 710
>gi|422579734|ref|ZP_16655253.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL005PA4]
gi|314914443|gb|EFS78274.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL005PA4]
Length = 810
Score = 271 bits (692), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 217/738 (29%), Positives = 346/738 (46%), Gaps = 110/738 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN+ Q EA +P+L+VAG GSGK G+ P +ILA+TFT
Sbjct: 42 LVDLNEPQREAVL-HAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTNK 100
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM+ R+ +VG AK + +STFHS ++++ R+ ++L + F IY +R I
Sbjct: 101 AAAEMKARVVDLVGN-RAKPMWVSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLIT 159
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++T D + ++ F + + K E
Sbjct: 160 --------------------LVTRDQN----------LDPKKFQPRAIMNWISHQKNELI 189
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D A A+ K+ D I + Y LR+ NALD+ DLI C+V +L FPEV
Sbjct: 190 APDQAVAAAKSG------NDRINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPEVR 243
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN--------------RITIVGDDDQSIF 515
++Y+ ++ ++VDE+QDT+ QY ++ L + + +VGD DQSI+
Sbjct: 244 EQYRRRFRHVLVDEYQDTNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIY 303
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I F KDF + I L +NYRST+ I+ AA++LI+ N+ R KN+ TD
Sbjct: 304 AFRGATIRNIIDFEKDFPGARTILLEQNYRSTQTILTAANNLIKVNLNRPA-KNLWTDQG 362
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G KI+ E + A++ +I E G SYG +A+ YR + F+ F
Sbjct: 363 DGDKIVGYVADTEHDEAAWVARRIDELVDEGR---TSYGQVAVFYRTNAQSRAFEDVFIR 419
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY +K VR ++ LR DD RR+ + R +
Sbjct: 420 TGLPYRVVGGVRFYERKEVRDAVSYLRAIANPSDDVSLRRILNT---PRRGIGARAEAAV 476
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLE----MISKLVRREPSIS 750
+ +T R+ SF A I +I G RS + Q R + ++ M+ + R
Sbjct: 477 EMFATARRISFWEALKRI--DEIDGLATRS-VNQIRAFVSLMDDHIAMVGQGKR------ 527
Query: 751 AVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTA--- 807
A+ + L E + + + K ++ L ++++ L++ +F++
Sbjct: 528 ------ADEIANSILKESGYITELENSKDPQDETRLENLVE-LVSVAQEFVARVHAVDID 580
Query: 808 AKEEGNVDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDI 866
E+GNV+ + + L AF++ I+ +++ D++ VTL T+H +KGLE+D
Sbjct: 581 EAEQGNVEDLELSGDDSLPAFLEQIALVADSDQVPA---DSDGVVTLMTLHTAKGLEFDT 637
Query: 867 VFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW--- 923
VF+ + P + A T + EERRL YV +TRARK+LF+ + W
Sbjct: 638 VFITGFEDGVFPHMRSLADA-----TELSEERRLAYVGITRARKQLFVSRASVRTMWGQA 692
Query: 924 QLLQPSRFLKEIPHHLRE 941
Q PSRF+ EIP HL E
Sbjct: 693 QYTPPSRFIDEIPEHLIE 710
>gi|422540872|ref|ZP_16616734.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL037PA1]
gi|314969858|gb|EFT13956.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL037PA1]
Length = 810
Score = 270 bits (691), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 221/731 (30%), Positives = 341/731 (46%), Gaps = 96/731 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN+ Q EA +P+L+VAG GSGK G+ P +ILA+TFT
Sbjct: 42 LVDLNEPQREAVL-HAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTNK 100
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM+ R+ +VG AK + +STFHS ++++ R+ ++L + F IY +R I
Sbjct: 101 AAAEMKARVVDLVGN-RAKPMWVSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLIT 159
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++T D + ++ F + + K E
Sbjct: 160 --------------------LVTRDQN----------LDPKKFQPRAIMNWISHQKNELI 189
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D A A+ K+ D I + Y LR+ NALD+ DLI C+V +L FPEV
Sbjct: 190 APDQAVAAAKSG------NDRINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPEVR 243
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN--------------RITIVGDDDQSIF 515
++Y+ ++ ++VDE+QDT+ QY ++ L + + +VGD DQSI+
Sbjct: 244 EQYRRRFRHVLVDEYQDTNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIY 303
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I F KDF + I L +NYRST+ I+ AA++LI+ N+ R KN+ TD
Sbjct: 304 AFRGATIRNIIDFEKDFPGARTILLEQNYRSTQTILTAANNLIKVNLNRPA-KNLWTDQG 362
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G KI+ E + A++ +I E G SYG +A+ YR + F+ F
Sbjct: 363 DGDKIVGYVADTEHDEAAWVARRIDELVDEGR---TSYGQVAVFYRTNAQSRAFEDVFIR 419
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY +K VR ++ LR DD RR+ + R +
Sbjct: 420 TGLPYRVVGGVRFYERKEVRDAVSYLRAIANPSDDVSLRRILNT---PRRGIGARAEAAV 476
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+ +T R+ SF A I +I G RS + Q R + ++ +V + +
Sbjct: 477 EMFATARRISFWEALKRI--DEIDGLATRS-VNQIRAFVSLMDDHIAMVGQGKRADEIAN 533
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
S+ + Y+ E D L +L SV Q +A V + A E+GNV
Sbjct: 534 SI--LKESGYITELENSKDPQDETRLENLVELVSVAQEFVARVH---AVDIDEA-EQGNV 587
Query: 815 DQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+ + + L AF++ I+ +++ D++ VTL T+H +KGLE+D VF+
Sbjct: 588 EDLELSGDDSLPAFLEQIALVADSDQVPA---DSDGVVTLMTLHTAKGLEFDTVFITGFE 644
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSR 930
+ P + A T + EERRL YV +TRARK+LF+ + W Q PSR
Sbjct: 645 DGVFPHMRSLADA-----TELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSR 699
Query: 931 FLKEIPHHLRE 941
F+ EIP HL E
Sbjct: 700 FIDEIPEHLIE 710
>gi|365974588|ref|YP_004956147.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes TypeIA2
P.acn33]
gi|365744587|gb|AEW79784.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes TypeIA2
P.acn33]
Length = 810
Score = 270 bits (691), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 221/731 (30%), Positives = 341/731 (46%), Gaps = 96/731 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN+ Q EA +P+L+VAG GSGK G+ P +ILA+TFT
Sbjct: 42 LVDLNEPQREAVL-HAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTNK 100
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM+ R+ +VG AK + +STFHS ++++ R+ ++L + F IY +R I
Sbjct: 101 AAAEMKARVVDLVGN-RAKPMWVSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLIT 159
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++T D + ++ F + + K E
Sbjct: 160 --------------------LVTRDQN----------LDPKKFQPRAIMNWISHQKNELI 189
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D A A+ K+ D I + Y LR+ NALD+ DLI C+V +L FPEV
Sbjct: 190 APDQAVAAAKSG------NDRINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPEVR 243
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN--------------RITIVGDDDQSIF 515
++Y+ ++ ++VDE+QDT+ QY ++ L + + +VGD DQSI+
Sbjct: 244 EQYRRRFRHVLVDEYQDTNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIY 303
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I F KDF + I L +NYRST+ I+ AA++LI+ N+ R KN+ TD
Sbjct: 304 AFRGATIRNIIDFEKDFPGARTILLEQNYRSTQTILTAANNLIKVNLNRPA-KNLWTDQG 362
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G KI+ E + A++ +I E G SYG +A+ YR + F+ F
Sbjct: 363 DGDKIVGYVADTEHDEAAWVARRIDELVDEGR---TSYGQVAVFYRTNAQSRAFEDVFIR 419
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY +K VR ++ LR DD RR+ + R +
Sbjct: 420 TGLPYRVVGGVRFYERKEVRDAVSYLRAIANPSDDVSLRRILNT---PRRGIGARAEAAV 476
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+ +T R+ SF A I +I G RS + Q R + ++ +V + +
Sbjct: 477 EMFATARRISFWEALKRI--DEIDGLATRS-VNQIRAFVSLMDDHIAMVGQGKRADEIAN 533
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
S+ + Y+ E D L +L SV Q +A V + A E+GNV
Sbjct: 534 SI--LKESGYITELENSKDPQDETRLENLVELVSVAQEFVARVH---AVDIDEA-EQGNV 587
Query: 815 DQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+ + + L AF++ I+ +++ D++ VTL T+H +KGLE+D VF+
Sbjct: 588 EDLELSGDDSLSAFLEQIALVADSDQVPA---DSDGVVTLMTLHTAKGLEFDTVFITGFE 644
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSR 930
+ P + A T + EERRL YV +TRARK+LF+ + W Q PSR
Sbjct: 645 DGVFPHMRSLADA-----TELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSR 699
Query: 931 FLKEIPHHLRE 941
F+ EIP HL E
Sbjct: 700 FIDEIPEHLIE 710
>gi|407936144|ref|YP_006851786.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes C1]
gi|407904725|gb|AFU41555.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes C1]
Length = 810
Score = 270 bits (691), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 221/731 (30%), Positives = 341/731 (46%), Gaps = 96/731 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN+ Q EA +P+L+VAG GSGK G+ P +ILA+TFT
Sbjct: 42 LVDLNEPQREAVL-HAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTNK 100
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM+ R+ +VG AK + +STFHS ++++ R+ ++L + F IY +R I
Sbjct: 101 AAAEMKARVVDLVGN-RAKPMWVSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLIT 159
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++T D + ++ F + + K E
Sbjct: 160 --------------------LVTRDQN----------LDPKKFQPRAIMNWISHQKNELI 189
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D A A+ K+ D I + Y LR+ NALD+ DLI C+V +L FPEV
Sbjct: 190 APDKAVAAAKSG------NDRINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPEVR 243
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN--------------RITIVGDDDQSIF 515
++Y+ ++ ++VDE+QDT+ QY ++ L + + +VGD DQSI+
Sbjct: 244 EQYRRRFRHVLVDEYQDTNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIY 303
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I F KDF + I L +NYRST+ I+ AA++LI+ N+ R KN+ TD
Sbjct: 304 AFRGATIRNIIDFEKDFPGARTILLEQNYRSTQTILTAANNLIKVNLNRPA-KNLWTDQG 362
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G KI+ E + A++ +I E G SYG +A+ YR + F+ F
Sbjct: 363 DGDKIVGYVADTEHDEAAWVARRIDELVDEGR---TSYGQVAVFYRTNAQSRAFEDVFIR 419
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY +K VR ++ LR DD RR+ + R +
Sbjct: 420 TGLPYRVVGGVRFYERKEVRDAVSYLRAIANPSDDVSLRRILNT---PRRGIGARAEAAV 476
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+ +T R+ SF A I +I G RS + Q R + ++ +V + +
Sbjct: 477 EMFATARRISFWEALKRI--DEIDGLATRS-VNQIRAFVSLMDDHIAMVGQGKRADEIAN 533
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
S+ + Y+ E D L +L SV Q +A V + A E+GNV
Sbjct: 534 SI--LKESGYITELENSKDPQDETRLENLVELVSVAQEFVARVH---AVDIDEA-EQGNV 587
Query: 815 DQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+ + + L AF++ I+ +++ D++ VTL T+H +KGLE+D VF+
Sbjct: 588 EDLELSGDDSLPAFLEQIALVADSDQVPA---DSDGVVTLMTLHTAKGLEFDTVFITGFE 644
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSR 930
+ P + A T + EERRL YV +TRARK+LF+ + W Q PSR
Sbjct: 645 DGVFPHMRSLADA-----TELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSR 699
Query: 931 FLKEIPHHLRE 941
F+ EIP HL E
Sbjct: 700 FIDEIPEHLIE 710
>gi|289424917|ref|ZP_06426696.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes SK187]
gi|289427700|ref|ZP_06429412.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes J165]
gi|295131282|ref|YP_003581945.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes SK137]
gi|354607477|ref|ZP_09025446.1| ATP-dependent DNA helicase PcrA [Propionibacterium sp. 5_U_42AFAA]
gi|365963409|ref|YP_004944975.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes TypeIA2
P.acn31]
gi|365965652|ref|YP_004947217.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes TypeIA2
P.acn17]
gi|386024698|ref|YP_005943003.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes 266]
gi|417930112|ref|ZP_12573492.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes SK182]
gi|422386270|ref|ZP_16466390.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL096PA3]
gi|422388908|ref|ZP_16469008.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL096PA2]
gi|422392701|ref|ZP_16472759.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL099PA1]
gi|422425816|ref|ZP_16502746.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL043PA1]
gi|422428635|ref|ZP_16505545.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL087PA1]
gi|422433806|ref|ZP_16510670.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL059PA2]
gi|422438875|ref|ZP_16515712.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL092PA1]
gi|422444011|ref|ZP_16520808.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL002PA1]
gi|422444635|ref|ZP_16521419.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL027PA1]
gi|422448415|ref|ZP_16525142.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL036PA3]
gi|422451082|ref|ZP_16527786.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL030PA2]
gi|422454051|ref|ZP_16530732.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL087PA3]
gi|422461210|ref|ZP_16537840.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL038PA1]
gi|422475579|ref|ZP_16552025.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL056PA1]
gi|422478398|ref|ZP_16554819.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL007PA1]
gi|422481077|ref|ZP_16557479.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL063PA1]
gi|422483583|ref|ZP_16559971.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL036PA1]
gi|422484412|ref|ZP_16560790.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL043PA2]
gi|422486813|ref|ZP_16563156.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL013PA2]
gi|422490175|ref|ZP_16566496.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL020PA1]
gi|422493952|ref|ZP_16570249.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL086PA1]
gi|422497293|ref|ZP_16573568.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL002PA3]
gi|422500699|ref|ZP_16576954.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL063PA2]
gi|422503485|ref|ZP_16579723.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL027PA2]
gi|422505701|ref|ZP_16581930.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL036PA2]
gi|422510105|ref|ZP_16586253.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL059PA1]
gi|422512091|ref|ZP_16588226.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL087PA2]
gi|422517029|ref|ZP_16593134.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL110PA2]
gi|422517622|ref|ZP_16593713.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL074PA1]
gi|422522399|ref|ZP_16598425.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL045PA1]
gi|422526887|ref|ZP_16602880.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL083PA1]
gi|422530090|ref|ZP_16606055.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL053PA1]
gi|422531140|ref|ZP_16607089.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL110PA1]
gi|422538004|ref|ZP_16613883.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL078PA1]
gi|422540592|ref|ZP_16616457.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL013PA1]
gi|422548334|ref|ZP_16624149.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL050PA3]
gi|422550249|ref|ZP_16626048.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL050PA1]
gi|422553384|ref|ZP_16629170.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL005PA3]
gi|422556052|ref|ZP_16631813.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL005PA2]
gi|422557956|ref|ZP_16633697.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL025PA2]
gi|422559920|ref|ZP_16635635.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL005PA1]
gi|422563637|ref|ZP_16639312.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL046PA1]
gi|422568059|ref|ZP_16643683.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL002PA2]
gi|422571545|ref|ZP_16647127.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL067PA1]
gi|289154616|gb|EFD03302.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes SK187]
gi|289159191|gb|EFD07383.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes J165]
gi|291375534|gb|ADD99388.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes SK137]
gi|313763127|gb|EFS34491.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL013PA1]
gi|313773164|gb|EFS39130.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL074PA1]
gi|313793367|gb|EFS41425.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL110PA1]
gi|313800989|gb|EFS42257.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL110PA2]
gi|313808729|gb|EFS47183.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL087PA2]
gi|313810354|gb|EFS48068.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL083PA1]
gi|313816467|gb|EFS54181.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL059PA1]
gi|313819821|gb|EFS57535.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL036PA1]
gi|313823311|gb|EFS61025.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL036PA2]
gi|313824786|gb|EFS62500.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL063PA1]
gi|313828273|gb|EFS65987.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL063PA2]
gi|313830207|gb|EFS67921.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL007PA1]
gi|313832960|gb|EFS70674.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL056PA1]
gi|313838057|gb|EFS75771.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL086PA1]
gi|314917767|gb|EFS81598.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL050PA1]
gi|314919507|gb|EFS83338.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL050PA3]
gi|314925815|gb|EFS89646.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL036PA3]
gi|314930099|gb|EFS93930.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL067PA1]
gi|314957100|gb|EFT01205.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL027PA1]
gi|314957690|gb|EFT01793.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL002PA1]
gi|314960758|gb|EFT04859.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL002PA2]
gi|314972985|gb|EFT17081.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL053PA1]
gi|314975621|gb|EFT19716.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL045PA1]
gi|314984812|gb|EFT28904.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL005PA1]
gi|314986165|gb|EFT30257.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL005PA2]
gi|314988777|gb|EFT32868.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL005PA3]
gi|315079961|gb|EFT51937.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL078PA1]
gi|315083289|gb|EFT55265.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL027PA2]
gi|315086938|gb|EFT58914.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL002PA3]
gi|315096648|gb|EFT68624.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL038PA1]
gi|315097877|gb|EFT69853.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL059PA2]
gi|315100641|gb|EFT72617.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL046PA1]
gi|315109268|gb|EFT81244.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL030PA2]
gi|327325064|gb|EGE66870.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL096PA3]
gi|327325309|gb|EGE67114.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL096PA2]
gi|327443823|gb|EGE90477.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL043PA1]
gi|327449135|gb|EGE95789.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL043PA2]
gi|327449263|gb|EGE95917.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL013PA2]
gi|327451317|gb|EGE97971.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL087PA3]
gi|327451706|gb|EGE98360.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL092PA1]
gi|328752262|gb|EGF65878.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL087PA1]
gi|328755353|gb|EGF68969.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL025PA2]
gi|328756392|gb|EGF70008.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL020PA1]
gi|328761099|gb|EGF74648.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL099PA1]
gi|332676156|gb|AEE72972.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes 266]
gi|340772799|gb|EGR95300.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes SK182]
gi|353556496|gb|EHC25866.1| ATP-dependent DNA helicase PcrA [Propionibacterium sp. 5_U_42AFAA]
gi|365740090|gb|AEW84292.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes TypeIA2
P.acn31]
gi|365742333|gb|AEW82027.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes TypeIA2
P.acn17]
gi|456738849|gb|EMF63416.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes FZ1/2/0]
Length = 810
Score = 270 bits (690), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 221/731 (30%), Positives = 341/731 (46%), Gaps = 96/731 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN+ Q EA +P+L+VAG GSGK G+ P +ILA+TFT
Sbjct: 42 LVDLNEPQREAVL-HAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTNK 100
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM+ R+ +VG AK + +STFHS ++++ R+ ++L + F IY +R I
Sbjct: 101 AAAEMKARVVDLVGN-RAKPMWVSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLIT 159
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++T D + ++ F + + K E
Sbjct: 160 --------------------LVTRDQN----------LDPKKFQPRAIMNWISHQKNELI 189
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D A A+ K+ D I + Y LR+ NALD+ DLI C+V +L FPEV
Sbjct: 190 APDQAVAAAKSG------NDRINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPEVR 243
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN--------------RITIVGDDDQSIF 515
++Y+ ++ ++VDE+QDT+ QY ++ L + + +VGD DQSI+
Sbjct: 244 EQYRRRFRHVLVDEYQDTNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIY 303
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I F KDF + I L +NYRST+ I+ AA++LI+ N+ R KN+ TD
Sbjct: 304 AFRGATIRNIIDFEKDFPGARTILLEQNYRSTQTILTAANNLIKVNLNRPA-KNLWTDQG 362
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G KI+ E + A++ +I E G SYG +A+ YR + F+ F
Sbjct: 363 DGDKIVGYVADTEHDEAAWVARRIDELVDEGR---TSYGQVAVFYRTNAQSRAFEDVFIR 419
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY +K VR ++ LR DD RR+ + R +
Sbjct: 420 TGLPYRVVGGVRFYERKEVRDAVSYLRAIANPSDDVSLRRILNT---PRRGIGARAEAAV 476
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+ +T R+ SF A I +I G RS + Q R + ++ +V + +
Sbjct: 477 EMFATARRISFWEALKRI--DEIDGLATRS-VNQIRAFVSLMDDHIAMVGQGKRADEIAN 533
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
S+ + Y+ E D L +L SV Q +A V + A E+GNV
Sbjct: 534 SI--LKESGYITELENSKDPQDETRLENLVELVSVAQEFVARVH---AVDIDEA-EQGNV 587
Query: 815 DQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+ + + L AF++ I+ +++ D++ VTL T+H +KGLE+D VF+
Sbjct: 588 EDLELSGDDSLPAFLEQIALVADSDQVPA---DSDGVVTLMTLHTAKGLEFDTVFITGFE 644
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSR 930
+ P + A T + EERRL YV +TRARK+LF+ + W Q PSR
Sbjct: 645 DGVFPHMRSLADA-----TELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSR 699
Query: 931 FLKEIPHHLRE 941
F+ EIP HL E
Sbjct: 700 FIDEIPEHLIE 710
>gi|422436402|ref|ZP_16513251.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL083PA2]
gi|327451777|gb|EGE98431.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL083PA2]
Length = 810
Score = 270 bits (690), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 221/731 (30%), Positives = 341/731 (46%), Gaps = 96/731 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN+ Q EA +P+L+VAG GSGK G+ P +ILA+TFT
Sbjct: 42 LVDLNEPQREAVL-HAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTNK 100
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM+ R+ +VG AK + +STFHS ++++ R+ ++L + F IY +R I
Sbjct: 101 AAAEMKARVVDLVGN-RAKPMWVSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLIT 159
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++T D + ++ F + + K E
Sbjct: 160 --------------------LVTRDQN----------LDPKKFQPRAIMNWISHQKNELI 189
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D A A+ K+ D I + Y LR+ NALD+ DLI C+V +L FPEV
Sbjct: 190 APDQAVAAAKSG------NDRINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPEVR 243
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN--------------RITIVGDDDQSIF 515
++Y+ ++ ++VDE+QDT+ QY ++ L + + +VGD DQSI+
Sbjct: 244 EQYRRRFRHVLVDEYQDTNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIY 303
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I F KDF + I L +NYRST+ I+ AA++LI+ N+ R KN+ TD
Sbjct: 304 AFRGATIRNIIDFEKDFPGARTILLEQNYRSTQTILTAANNLIKVNLNRPA-KNLWTDQG 362
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G KI+ E + A++ +I E G SYG +A+ YR + F+ F
Sbjct: 363 DGDKIVGYVADTEHDEAAWVARRIDELVDEGR---TSYGQVAVFYRTNAQSRAFEDVFIR 419
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY +K VR ++ LR DD RR+ + R +
Sbjct: 420 TGLPYRVVGGVRFYERKEVRDAVSYLRAIANPSDDVSLRRILNT---PRRGIGARAEAAV 476
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+ +T R+ SF A I +I G RS + Q R + ++ +V + +
Sbjct: 477 EMFATARRISFWEALKRI--DEIDGLATRS-VNQIRAFVSLMDDHIAMVGQGKRADEIAN 533
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
S+ + Y+ E D L +L SV Q +A V + A E+GNV
Sbjct: 534 SI--LKESGYITELENSKDPQDETRLENLVELVSVAQEFVARVH---AVDIDEA-EQGNV 587
Query: 815 DQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+ + + L AF++ I+ +++ D++ VTL T+H +KGLE+D VF+
Sbjct: 588 EDLELSGDDSLPAFLEQIALVADSDQVPA---DSDGVVTLMTLHTAKGLEFDTVFITGFE 644
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSR 930
+ P + A T + EERRL YV +TRARK+LF+ + W Q PSR
Sbjct: 645 DGVFPHMRSLADA-----TELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSR 699
Query: 931 FLKEIPHHLRE 941
F+ EIP HL E
Sbjct: 700 FIDEIPEHLIE 710
>gi|226365048|ref|YP_002782831.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus opacus B4]
gi|226243538|dbj|BAH53886.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus opacus B4]
Length = 827
Score = 270 bits (690), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 230/746 (30%), Positives = 347/746 (46%), Gaps = 111/746 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
LQ LN Q EA +PLLIVAG GSGK G+ P ILA+TFT
Sbjct: 31 LQGLNPPQREAVV-HAGSPLLIVAGAGSGKTAVLTRRIAYLLAERGVMPGQILAITFTNK 89
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EMR+R+ +VG A + +STFHS +++ R+ A L S F IY RR +
Sbjct: 90 AAAEMRERVAHLVGP-RANSMWVSTFHSSCVRILRAQAALLPGLNSNFSIYDADDSRRLL 148
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
++ + + KR S +L T H ++ L
Sbjct: 149 T----MISKDLNIDTKRYSARLLAT--HISNLKNELV----------------------- 179
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D + + K PAE ++ A + +Y LRS NALD+ DLI +V +L FP+V
Sbjct: 180 DPEQASADADKDPAELPRLI----AKVYGHYQQRLRSANALDFDDLIGETVAMLQAFPQV 235
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQIL---------ASHN----RITIVGDDDQSIF 515
+ Y+ ++ ++VDE+QDT+ QY L++ L A H + +VGD DQSI+
Sbjct: 236 AEYYRRRFRHVLVDEYQDTNHAQYMLVRELVGSTADGEDADHRVAPAELCVVGDADQSIY 295
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I + F +D+ + + I L +NYRST+ I+ AA+S+I N R + K + TD+
Sbjct: 296 AFRGATIRNIEEFERDYPDARTILLEQNYRSTQNILSAANSVISKNTGRRE-KRLWTDSG 354
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G I NE + +F+ +I + +G A +G +A+ YR S + + F
Sbjct: 355 EGELITGYVADNEHDEASFVASEIDKLVDSGDA---KFGDVAVFYRTNNSSRALEEIFIR 411
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY +K VR I+A LR D RR+ ++ + D
Sbjct: 412 LGVPYKVVGGVRFYERKEVRDIVAYLRVLANEDDTVSLRRILNT-------PRRGIGDRA 464
Query: 695 DKISTI----RKCSFISAACDIFGAKISGTFKRSQ--------LTQGRKVLLTLEMISKL 742
+ + R SF A D ++ RSQ L G +VL+ E +
Sbjct: 465 EACVAVHSEQRGISFAEALRDGGEGRVRLLNTRSQKAIASFLELMDGLRVLMPPETTADD 524
Query: 743 VRREPSISAVITSVANMVPQK--YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDF 800
+ P I V V ++ Y E A D G L+ N+L SV + +D +
Sbjct: 525 I--VPDQLGDIGDVVEAVLERTGYRAELAASSDPQDGARLDNLNELVSVAREFSSDARN- 581
Query: 801 LSTKFTAAKEEGNVD-QDKKGCINVLKAFIDYISERETEHFRTQRHDN-ENSVTLTTIHQ 858
+ E+G+VD +D + L AF++ +S Q DN E VTL T+H
Sbjct: 582 -AAGLVEPPEDGDVDARDGEPDPGSLAAFLERVSLVADSD---QLPDNDEGVVTLMTLHT 637
Query: 859 SKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM 918
+KGLE+ +VFV + + P + T + EERRL YV +TRAR++L++ +
Sbjct: 638 AKGLEFPVVFVTGWEDGQFPHMRALGDP-----TELSEERRLAYVGITRARQRLYLTRAV 692
Query: 919 MDANWQLLQP-----SRFLKEIPHHL 939
M + W QP SRFL+EIP L
Sbjct: 693 MRSAWG--QPIQNPESRFLQEIPSDL 716
>gi|335051698|ref|ZP_08544611.1| ATP-dependent DNA helicase PcrA [Propionibacterium sp. 409-HC1]
gi|342212217|ref|ZP_08704942.1| ATP-dependent DNA helicase PcrA [Propionibacterium sp. CC003-HC2]
gi|422496449|ref|ZP_16572733.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL025PA1]
gi|313812190|gb|EFS49904.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL025PA1]
gi|333766107|gb|EGL43423.1| ATP-dependent DNA helicase PcrA [Propionibacterium sp. 409-HC1]
gi|340767761|gb|EGR90286.1| ATP-dependent DNA helicase PcrA [Propionibacterium sp. CC003-HC2]
Length = 810
Score = 270 bits (689), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 221/731 (30%), Positives = 341/731 (46%), Gaps = 96/731 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN+ Q EA +P+L+VAG GSGK G+ P +ILA+TFT
Sbjct: 42 LVDLNEPQREAVL-HAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTNK 100
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM+ R+ +VG AK + +STFHS ++++ R+ ++L + F IY +R I
Sbjct: 101 AAAEMKARVVDLVGN-RAKPMWVSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLIT 159
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++T D + ++ F + + K E
Sbjct: 160 --------------------LVTRDQN----------LDPKKFQPRAIMNWISHQKNELI 189
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D A A+ K+ D I + Y LR+ NALD+ DLI C+V +L FPEV
Sbjct: 190 APDQAVAAAKSG------NDRINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPEVR 243
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN--------------RITIVGDDDQSIF 515
++Y+ ++ ++VDE+QDT+ QY ++ L + + +VGD DQSI+
Sbjct: 244 EQYRRRFRHVLVDEYQDTNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIY 303
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I F KDF + I L +NYRST+ I+ AA++LI+ N+ R KN+ TD
Sbjct: 304 AFRGATIRNIIDFEKDFPRARTILLEQNYRSTQTILTAANNLIKVNLNRPA-KNLWTDQG 362
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G KI+ E + A++ +I E G SYG +A+ YR + F+ F
Sbjct: 363 DGDKIVGYVADTEHDEAAWVARRIDELVDEGR---TSYGQVAVFYRTNAQSRAFEDVFIR 419
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY +K VR ++ LR DD RR+ + R +
Sbjct: 420 TGLPYRVVGGVRFYERKEVRDAVSYLRAIANPSDDVSLRRILNT---PRRGIGARAEAAV 476
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+ +T R+ SF A I +I G RS + Q R + ++ +V + +
Sbjct: 477 EMFATARRISFWEALKRI--DEIDGLATRS-VNQIRAFVSLMDDHIAMVGQGKRADEIAN 533
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
S+ + Y+ E D L +L SV Q +A V + A E+GNV
Sbjct: 534 SI--LKESGYITELENSKDPQDETRLENLVELVSVAQEFVARVH---AVDIDEA-EQGNV 587
Query: 815 DQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+ + + L AF++ I+ +++ D++ VTL T+H +KGLE+D VF+
Sbjct: 588 EDLELSGDDSLPAFLEQIALVADSDQVPA---DSDGVVTLMTLHTAKGLEFDTVFITGFE 644
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSR 930
+ P + A T + EERRL YV +TRARK+LF+ + W Q PSR
Sbjct: 645 DGVFPHMRSLADA-----TELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSR 699
Query: 931 FLKEIPHHLRE 941
F+ EIP HL E
Sbjct: 700 FIDEIPEHLIE 710
>gi|419964945|ref|ZP_14480895.1| ATP-dependent DNA helicase [Rhodococcus opacus M213]
gi|414569664|gb|EKT80407.1| ATP-dependent DNA helicase [Rhodococcus opacus M213]
Length = 828
Score = 270 bits (689), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 231/746 (30%), Positives = 346/746 (46%), Gaps = 111/746 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
LQ LN Q EA +PLLIVAG GSGK G+ P ILA+TFT
Sbjct: 31 LQGLNPPQREAVV-HAGSPLLIVAGAGSGKTAVLTRRIAYLLAERGVMPGQILAITFTNK 89
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EMR+R+ +VG A + +STFHS +++ R+ A L S F IY RR +
Sbjct: 90 AAAEMRERVAHLVGP-RANSMWVSTFHSSCVRILRAQASLLPGLNSNFSIYDADDSRRLL 148
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
++ + + KR S +L T H ++ L
Sbjct: 149 T----MIAKDLNIDTKRYSARLLAT--HISNLKNELV----------------------- 179
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D + + K PAE ++ A + +Y LRS NALD+ DLI +V +L FP+V
Sbjct: 180 DPEQASADADKDPAELPRLI----AKVYGHYQQRLRSANALDFDDLIGETVAMLQAFPQV 235
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQIL---------ASHN----RITIVGDDDQSIF 515
+ Y+ ++ ++VDE+QDT+ QY L++ L A H + +VGD DQSI+
Sbjct: 236 AEYYRRRFRHVLVDEYQDTNHAQYMLVRELVGGTADGEDADHRVAPAELCVVGDADQSIY 295
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I + F +D+ + + I L +NYRST+ I+ AA+S+I N R + K + TD+
Sbjct: 296 AFRGATIRNIEEFERDYPDARTILLEQNYRSTQNILSAANSVISKNTGRRE-KRLWTDSG 354
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G I NE + +F+ +I + +G A +G +A+ YR S + + F
Sbjct: 355 EGELITGYVADNEHDEASFVASEIDKLVDSGDA---KFGDVAVFYRTNNSSRALEEIFIR 411
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY +K VR I+A LR D RR+ ++ + D
Sbjct: 412 LGVPYKVVGGVRFYERKEVRDIVAYLRVLANEDDTVSLRRILNT-------PRRGIGDRA 464
Query: 695 DKISTI----RKCSFISAACDIFGAKISGTFKRSQ--------LTQGRKVLLTLEMISKL 742
+ + R SF A D ++ RSQ L G +V+L E
Sbjct: 465 EACVAVHSEQRGISFAEALRDGGEGRVPLLNTRSQKAIASFLELMDGLRVMLPPETTVDD 524
Query: 743 VRREPSISAVITSVANMVPQK--YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDF 800
V P I V V ++ Y E A D G L+ N+L SV + +D +
Sbjct: 525 V--VPDQLGDIGDVVEAVLERTGYRAELAASSDPQDGARLDNLNELVSVAREFSSDARN- 581
Query: 801 LSTKFTAAKEEGNVD-QDKKGCINVLKAFIDYISERETEHFRTQRHDN-ENSVTLTTIHQ 858
+ E+G+VD +D + L AF++ +S Q DN E VTL T+H
Sbjct: 582 -AAGLVEPPEDGDVDARDGEPDPGSLAAFLERVSLVADSD---QLPDNDEGVVTLMTLHT 637
Query: 859 SKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM 918
+KGLE+ +VFV + + P + T + EERRL YV +TRAR++L++ +
Sbjct: 638 AKGLEFPVVFVTGWEDGQFPHMRALGDP-----TELSEERRLAYVGITRARQRLYLTRAV 692
Query: 919 MDANWQLLQP-----SRFLKEIPHHL 939
M + W QP SRFL+EIP L
Sbjct: 693 MRSAWG--QPIQNPESRFLQEIPSDL 716
>gi|422544698|ref|ZP_16620533.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL082PA1]
gi|314963433|gb|EFT07533.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL082PA1]
Length = 810
Score = 269 bits (688), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 221/731 (30%), Positives = 341/731 (46%), Gaps = 96/731 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN+ Q EA +P+L+VAG GSGK G+ P +ILA+TFT
Sbjct: 42 LVDLNEPQREAVL-HAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTNK 100
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM+ R+ +VG AK + +STFHS ++++ R+ ++L + F IY +R I
Sbjct: 101 AAAEMKARVVDLVGN-RAKPMWVSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLIT 159
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++T D + ++ F + + K E
Sbjct: 160 --------------------LVTRDQN----------LDPKKFQPRAIMNWISHQKNELI 189
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D A A+ K+ D I + Y LR+ NALD+ DLI C+V +L FPEV
Sbjct: 190 APDQAVAAAKSG------NDRINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPEVR 243
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN--------------RITIVGDDDQSIF 515
++Y+ ++ ++VDE+QDT+ QY ++ L + + +VGD DQSI+
Sbjct: 244 EQYRCRFRHVLVDEYQDTNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIY 303
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I F KDF + I L +NYRST+ I+ AA++LI+ N+ R KN+ TD
Sbjct: 304 AFRGATIRNIIDFEKDFPGARTILLEQNYRSTQTILTAANNLIKVNLNRPA-KNLWTDQG 362
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G KI+ E + A++ +I E G SYG +A+ YR + F+ F
Sbjct: 363 DGDKIVGYVADTEHDEAAWVARRIDELVDEGR---TSYGQVAVFYRTNAQSRAFEDVFIR 419
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY +K VR ++ LR DD RR+ + R +
Sbjct: 420 TGLPYRVVGGVRFYERKEVRDAVSYLRAIANPSDDVSLRRILNT---PRRGIGARAEAAV 476
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+ +T R+ SF A I +I G RS + Q R + ++ +V + +
Sbjct: 477 EMFATARRISFWEALKRI--DEIDGLATRS-VNQIRAFVSLMDDHIAMVGQGKRADEIAN 533
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
S+ + Y+ E D L +L SV Q +A V + A E+GNV
Sbjct: 534 SI--LKESGYITELENSKDPQDETRLENLVELVSVAQEFVARVH---AVDIDEA-EQGNV 587
Query: 815 DQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+ + + L AF++ I+ +++ D++ VTL T+H +KGLE+D VF+
Sbjct: 588 EDLELSGDDSLPAFLEQIALVADSDQVPA---DSDGVVTLMTLHTAKGLEFDTVFITGFE 644
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSR 930
+ P + A T + EERRL YV +TRARK+LF+ + W Q PSR
Sbjct: 645 DGVFPHMRSLADA-----TELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSR 699
Query: 931 FLKEIPHHLRE 941
F+ EIP HL E
Sbjct: 700 FIDEIPEHLIE 710
>gi|422429609|ref|ZP_16506505.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL072PA2]
gi|422533050|ref|ZP_16608992.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL072PA1]
gi|314979801|gb|EFT23895.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL072PA2]
gi|315090029|gb|EFT62005.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL072PA1]
Length = 810
Score = 269 bits (688), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 217/738 (29%), Positives = 345/738 (46%), Gaps = 110/738 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN+ Q EA +P+L+VAG GSGK G+ P +ILA+TFT
Sbjct: 42 LVDLNEPQREAVL-HAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTNK 100
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM+ R+ +VG AK + +STFHS ++++ R+ ++L + F IY +R I
Sbjct: 101 AAAEMKARVVDLVGN-RAKPMWVSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLIT 159
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++T D + ++ F + + K E
Sbjct: 160 --------------------LVTRDQN----------LDPKKFQPRAIMNWISHQKNELI 189
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D A A+ K+ D I + Y LR+ NALD+ DLI C+V +L FPEV
Sbjct: 190 APDQAVAAAKSG------NDRINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPEVR 243
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN--------------RITIVGDDDQSIF 515
++Y+ ++ ++VDE+QDT+ QY ++ L + + +VGD DQSI+
Sbjct: 244 EQYRRRFRHVLVDEYQDTNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIY 303
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I F KDF + I L +NYRST+ I+ AA++LI+ N+ R KN+ TD
Sbjct: 304 AFRGATIRNIIDFEKDFPGARTILLEQNYRSTQTILTAANNLIKVNLNRPA-KNLWTDQG 362
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G KI+ E + A++ +I E G SYG +A+ YR + F+ F
Sbjct: 363 DGDKIVGYVADTEHDEAAWVARRIDELVDEGR---TSYGQVAVFYRTNAQSRAFEDVFIR 419
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY +K VR ++ LR DD RR+ + R +
Sbjct: 420 TGLPYRVVGGVRFYERKEVRDAVSYLRAIANPSDDVSLRRILNT---PRRGIGARAEAAV 476
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTL----EMISKLVRREPSIS 750
+ +T R+ SF A I +I G RS + Q R + + M+ + R
Sbjct: 477 EMFATARRISFWEALKRI--DEIDGLATRS-VNQIRAFVSLMGDHIAMVGQGKR------ 527
Query: 751 AVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTA--- 807
A+ + L E + + + K ++ L ++++ L++ +F++
Sbjct: 528 ------ADEIANSILKESGYITELENSKDPQDETRLENLVE-LVSVAQEFVARVHAVDID 580
Query: 808 AKEEGNVDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDI 866
E+GNV+ + + L AF++ I+ +++ D++ VTL T+H +KGLE+D
Sbjct: 581 EAEQGNVEDLELSGDDSLPAFLEQIALVADSDQVPA---DSDGVVTLMTLHTAKGLEFDT 637
Query: 867 VFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL 926
VF+ + P + A T + EERRL YV +TRARK+LF+ + W
Sbjct: 638 VFITGFEDGVFPHMRSLADA-----TELSEERRLAYVGITRARKQLFVSRASVRTMWGQA 692
Query: 927 Q---PSRFLKEIPHHLRE 941
Q PSRF+ EIP HL E
Sbjct: 693 QYNPPSRFIDEIPEHLIE 710
>gi|424850998|ref|ZP_18275395.1| ATP-dependent DNA helicase PcrA [Rhodococcus opacus PD630]
gi|356665663|gb|EHI45734.1| ATP-dependent DNA helicase PcrA [Rhodococcus opacus PD630]
Length = 828
Score = 269 bits (687), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 230/746 (30%), Positives = 347/746 (46%), Gaps = 111/746 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LN Q EA +PLLIVAG GSGK G+ P ILA+TFT
Sbjct: 31 LEGLNPPQREAVV-HAGSPLLIVAGAGSGKTAVLTRRIAYLLAERGVMPGQILAITFTNK 89
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EMR+R+ +VG A + +STFHS +++ R+ A L S F IY RR +
Sbjct: 90 AAAEMRERVAHLVGP-RANSMWVSTFHSSCVRILRAQAALLPGLNSNFSIYDADDSRRLL 148
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
++ + + KR S +L T H ++ L
Sbjct: 149 T----MIAKDLNIDTKRYSARLLAT--HISNLKNELV----------------------- 179
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D + + K PAE ++ A + +Y LRS NALD+ DLI +V +L FP+V
Sbjct: 180 DPEQASADADKDPAELPRLI----AKVYGHYQQRLRSANALDFDDLIGETVAMLQAFPQV 235
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQIL---------ASHN----RITIVGDDDQSIF 515
+ Y+ ++ ++VDE+QDT+ QY L++ L A H + +VGD DQSI+
Sbjct: 236 AEYYRRRFRHVLVDEYQDTNHAQYMLVRELVGGTADGEDADHRVAPAELCVVGDADQSIY 295
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I + F +D+ + + I L +NYRST+ I+ AA+S+I N R + K + TD+
Sbjct: 296 AFRGATIRNIEEFERDYPDARTILLEQNYRSTQNILSAANSVISKNTGRRE-KRLWTDSG 354
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G I NE + +F+ +I + +G A +G +A+ YR S + + F
Sbjct: 355 EGELITGYVADNEHDEASFVASEIDKLVDSGDA---KFGDVAVFYRTNNSSRALEEIFIR 411
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY +K VR I+A LR D RR+ ++ + D
Sbjct: 412 LGVPYKVVGGVRFYERKEVRDIVAYLRVLANEDDTVSLRRILNT-------PRRGIGDRA 464
Query: 695 DKISTI----RKCSFISAACDIFGAKISGTFKRSQ--------LTQGRKVLLTLEMISKL 742
+ + R SF A D ++ RSQ L G +V+L E +
Sbjct: 465 EACVAVHSEQRGISFAEALRDGGEGRVPLLNTRSQKAIASFLELMDGLRVMLPPETTADD 524
Query: 743 VRREPSISAVITSVANMVPQK--YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDF 800
V P I V V ++ Y E A D G L+ N+L SV + +D +
Sbjct: 525 V--VPDQLGDIGDVVEAVLERTGYRAELAASSDPQDGARLDNLNELVSVAREFSSDARN- 581
Query: 801 LSTKFTAAKEEGNVD-QDKKGCINVLKAFIDYISERETEHFRTQRHDN-ENSVTLTTIHQ 858
+ E+G+VD +D + L AF++ +S Q DN E VTL T+H
Sbjct: 582 -AAGLVEPPEDGDVDARDGEPDPGSLAAFLERVSLVADSD---QLPDNDEGVVTLMTLHT 637
Query: 859 SKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM 918
+KGLE+ +VFV + + P + T + EERRL YV +TRAR++L++ +
Sbjct: 638 AKGLEFPVVFVTGWEDGQFPHMRALGDP-----TELSEERRLAYVGITRARQRLYLTRAV 692
Query: 919 MDANWQLLQP-----SRFLKEIPHHL 939
M + W QP SRFL+EIP L
Sbjct: 693 MRSAWG--QPIQNPESRFLQEIPSDL 716
>gi|372209661|ref|ZP_09497463.1| PcrA-like UvrD/Rep family ATP-dependent DNA helicase
[Flavobacteriaceae bacterium S85]
Length = 778
Score = 269 bits (687), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 219/734 (29%), Positives = 354/734 (48%), Gaps = 113/734 (15%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
YL+ LN Q AA M P++I+AG GSGK G+ IL++TFT
Sbjct: 4 YLEGLNPPQ-RAAVEQMEGPMIIIAGAGSGKTRVLTYRIAHLMKNGVDAFQILSLTFTNK 62
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++RIG++VGK+ AK L + TFHS ++ R+ AEKL S F IY
Sbjct: 63 AAREMKERIGAVVGKSEAKNLWMGTFHSVFARILRAEAEKLGYPSSFTIYDSQ------- 115
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++VRL+ + ++K + D R S F ++
Sbjct: 116 DSVRLMNS----IIKEMGLDKDQYKAKSVLGRISQF----------------------KN 149
Query: 410 GMDVAKASGKTP----AEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+ KA P A+ + + ++GA I + Y A+D+ DL+ + +LL F
Sbjct: 150 SLITVKAYHNNPELIEADTQAMRPQMGA-IYKAYVDRCFKAGAMDFDDLLLKTNELLVRF 208
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
P+V +YQD ++ ++VDE+QDT+ QY +++ LA I +VGDD QSI++F GA+I+
Sbjct: 209 PDVLSKYQDRFRYVMVDEYQDTNHSQYLIVRALADRFQNICVVGDDSQSIYAFRGANINN 268
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+F+KD+ + K +L +NYRST IVEAA+SLI+ N R K + T N G KI +
Sbjct: 269 ILNFQKDYPDVKTFKLEQNYRSTSNIVEAANSLIEKNKTRLD-KTIFTANDAGGKIKVMR 327
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG 644
++ + ++ + I E+A N +Y + AILYR + + A R++ I + ++G
Sbjct: 328 TLSDGEEGRWVANSIFENAMNKQ---LTYDNFAILYRTNAQSRAMEDALRKKGIKYRMYG 384
Query: 645 -VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
++FY++K ++ ++A LR + D+ E KR+I++ +
Sbjct: 385 GLSFYQRKEIKDLLAYLRVLINPNDE---------------EALKRIINYPARGIGATTL 429
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSV------- 756
++ A + +G I G + KV L ++ +K + + + +I S+
Sbjct: 430 DKLTVAANHYGRSIFGVIQNLD-----KVDLKIQGATK--NKLNNFATLIESLQINAKAN 482
Query: 757 -ANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVD 815
A V + + + D N + +V Q LL + DF+ + +E +D
Sbjct: 483 NAFQVADEVVKRVGLIKDLQTDGTPEAVNKVENV-QELLNGIKDFIEER-----KEQELD 536
Query: 816 QDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANET 875
L AF++ ++ T+ + D+E V+L TIH SKGLE+ V++A ET
Sbjct: 537 TS-------LTAFLEDVALATTQD---TKEDDEPMVSLMTIHLSKGLEFPYVYIAGMEET 586
Query: 876 EIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFL 932
P N + +EEERRL YVA+TRA K+ ++ Y W L +PSRFL
Sbjct: 587 LFPSALSVNTR-----SELEEERRLFYVALTRAEKQCYLSYAHTRYRWGKLVDCEPSRFL 641
Query: 933 KEIPHHLREVQAEQ 946
+EI E A Q
Sbjct: 642 EEIDERFLEQLAPQ 655
>gi|375093514|ref|ZP_09739779.1| ATP-dependent DNA helicase PcrA [Saccharomonospora marina XMU15]
gi|374654247|gb|EHR49080.1| ATP-dependent DNA helicase PcrA [Saccharomonospora marina XMU15]
Length = 800
Score = 268 bits (686), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 242/831 (29%), Positives = 367/831 (44%), Gaps = 132/831 (15%)
Query: 238 PDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNIL 282
P ++ L LN Q AA +PLL+VAG GSGK G P I+
Sbjct: 11 PSRHAALLDDLNPAQ-RAAVEHTGSPLLVVAGAGSGKTRVLTRRIAYLLAERGAHPGQIM 69
Query: 283 AMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHG 342
A+TFT AA+EMRDR+ +VG+ A + +STFHS ++L R A+ LE TS F +Y
Sbjct: 70 AITFTNKAAAEMRDRVSELVGR-RAGAMWVSTFHSMCVRLLRREAKTLEMTSSFSVYDAD 128
Query: 343 QQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQ 402
RR + R L+ L KR L H ++ L
Sbjct: 129 DSRRLMTLVARDLD----LDPKRYPARALAA--HVSGLKNEL------------------ 164
Query: 403 YNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLL 462
+D A+ + +F + E Y L NA+D+ DLI +V+LL
Sbjct: 165 --------VDADTAAERAAGDFERRTAEA----YREYQRRLMQANAMDFDDLIMRTVELL 212
Query: 463 STFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN---------RITIVGDDDQS 513
FP+V + Y+ ++ ++VDE+QDT+ QY+L++ L + +VGD DQS
Sbjct: 213 QAFPDVAEHYRRRFRHVLVDEYQDTNHAQYTLVRELVGTKPTESGVEPAELCVVGDADQS 272
Query: 514 IFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTD 573
I++F GA I + F +DF + I L +NYRST+ I+ AA+++I N R K + TD
Sbjct: 273 IYAFRGATIRNIEEFERDFPAARTILLEQNYRSTQTILSAANAVIARNPNRRD-KRLWTD 331
Query: 574 NSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
+ HG +I+ NE + AF+ +I + A G A Y +A+ YR +VF+ F
Sbjct: 332 SGHGERIVGYVADNEHDEAAFVAGEIDDLADRGEA---KYSDVAVFYRTNNQSRVFEEIF 388
Query: 634 RERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID 692
+P+ + GV FY ++ VR +A LR D RR+ K+ + D
Sbjct: 389 IRLGLPYRVVGGVRFYERREVRDALAYLRVLANPDDTVSLRRILNV-------PKRGIGD 441
Query: 693 HIDKISTI----RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPS 748
+ + + SF SA + KI+ RSQ V L L+ +++LV
Sbjct: 442 RAEAVVATHAERERVSFSSALREAAAGKIALLNSRSQKAIAAFVEL-LDGLAELVDSGEE 500
Query: 749 ISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAA 808
++ ++ +V + LE+ D +L N D L + + TDF T T
Sbjct: 501 VADLLEAVLERTGYRAELEESDDPQ-DASRLENLDE-----LVTVAREFTDFAQT--TTG 552
Query: 809 KEEGNVDQDKKGCINVLKAFIDYIS-----------ERETEHFRTQRHDNENSVTLTTIH 857
+EG + L AF++ +S + E+E D+ VTL T+H
Sbjct: 553 ADEGEAEDAGVPEPGSLPAFLERVSLVADADSIPAPDGESE------QDDSGVVTLMTVH 606
Query: 858 QSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV 917
+KGLE+ +VF + P + A+ E + EERRL YVA+TRARK+L++
Sbjct: 607 TAKGLEYPVVFCTGWEDGVFPHLR----ALGEP-KELAEERRLAYVAITRARKRLYVSRA 661
Query: 918 MMDANWQLLQP-----SRFLKEIPHHLREVQAEQSVQDQHENIPEGTAQFTINLPREENC 972
++ W QP SRFL EIP L D P G Q PR
Sbjct: 662 LVRTAWG--QPMNNPASRFLDEIPAEL---------LDWRREAPSGAGQG--GSPRAATT 708
Query: 973 CETDLVSTDF---LNVQLSGAATESMELLEACNGNSFLRRFSVEDRSIISH 1020
+ + D + SG T S + +A ++ + V DR +SH
Sbjct: 709 WGRRIGTGDGSAQAGIAASGMRTTSFKGWKADWKDTVALKLDVGDR--VSH 757
>gi|422395818|ref|ZP_16475851.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL097PA1]
gi|327332323|gb|EGE74059.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL097PA1]
Length = 810
Score = 268 bits (686), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 219/738 (29%), Positives = 348/738 (47%), Gaps = 110/738 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN+ Q EA +P+L+VAG GSGK G+ P +ILA+TFT
Sbjct: 42 LVDLNEPQREAVL-HAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTNK 100
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM+ R+ +VG AK + +STFHS ++++ R+ + L + F IY +R I
Sbjct: 101 AAAEMKARVVDLVGN-RAKPMWVSTFHSAAVRILRTDIDGLGISRNFSIYDDTDAKRLIT 159
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
L+ ++ L K+ F A++ + + K E
Sbjct: 160 ----LVARDQNLDPKK-------------------FQPRAIMNW-------ISHQKNELI 189
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D A A+ K+ D I + Y LR+ NALD+ DLI C+V +L FPEV
Sbjct: 190 APDQAVAAAKSG------NDRINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPEVR 243
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN--------------RITIVGDDDQSIF 515
++Y+ ++ ++VDE+QDT+ QY ++ L + + +VGD DQSI+
Sbjct: 244 EQYRRRFRHVLVDEYQDTNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIY 303
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I F KDF + I L +NYRST+ I+ AA++LI+ N+ R KN+ TD
Sbjct: 304 AFRGATIRNIIDFEKDFPGARTILLEQNYRSTQTILTAANNLIKVNLNRPA-KNLWTDQG 362
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G KI+ E + A++ +I E G SYG +A+ YR + F+ F
Sbjct: 363 DGDKIVGYVADTEHDEAAWVARRIDELVDEGR---TSYGQVAVFYRTNAQSRAFEDVFIR 419
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY +K VR ++ LR DD RR+ + R +
Sbjct: 420 TGLPYRVVGGVRFYERKEVRDAVSYLRAIANPSDDVSLRRILNT---PRRGIGARAEAAV 476
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLE----MISKLVRREPSIS 750
+ +T R+ SF A I +I G RS + Q R + ++ M+ + R
Sbjct: 477 EMFATARRISFWEALKRI--DEIDGLATRS-VNQIRAFVSLMDDHIAMVGQGKR------ 527
Query: 751 AVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTA--- 807
A+ + L E + + + K ++ L ++++ L++ +F++
Sbjct: 528 ------ADEIANSILKESGYITELENSKDPQDETRLENLVE-LVSVAQEFVARVHAVDID 580
Query: 808 AKEEGNVDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDI 866
E+GNV+ + + L AF++ I+ +++ D++ VTL T+H +KGLE+D
Sbjct: 581 EAEQGNVEDLELSGDDSLPAFLEQIALVADSDQVPA---DSDGVVTLMTLHTAKGLEFDT 637
Query: 867 VFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL 926
VF+ + P + A T + EERRL YV +TRARK+LF+ + W
Sbjct: 638 VFITGFEDGVFPHMRSLADA-----TELSEERRLAYVGITRARKQLFVSRASVRTMWGQA 692
Query: 927 Q---PSRFLKEIPHHLRE 941
Q PSRF+ EIP HL E
Sbjct: 693 QYNPPSRFIDEIPEHLIE 710
>gi|384106735|ref|ZP_10007641.1| ATP-dependent DNA helicase [Rhodococcus imtechensis RKJ300]
gi|383833496|gb|EID72948.1| ATP-dependent DNA helicase [Rhodococcus imtechensis RKJ300]
Length = 800
Score = 268 bits (686), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 231/747 (30%), Positives = 348/747 (46%), Gaps = 113/747 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
LQ LN Q EA +PLLIVAG GSGK G+ P ILA+TFT
Sbjct: 3 LQGLNPPQREAVV-HAGSPLLIVAGAGSGKTAVLTRRIAYLLAERGVMPGQILAITFTNK 61
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EMR+R+ +VG A + +STFHS +++ R+ A L S F IY RR +
Sbjct: 62 AAAEMRERVAHLVGP-RANSMWVSTFHSSCVRILRAQAALLPGLNSNFSIYDADDSRRLL 120
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
++ + + KR S +L T H ++ L
Sbjct: 121 T----MIAKDLNIDTKRYSARLLAT--HISNLKNELV----------------------- 151
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D + + K PAE ++ A + +Y LRS NALD+ DLI +V +L FP+V
Sbjct: 152 DPEQASADADKDPAELPRLI----AKVYGHYQQRLRSANALDFDDLIGETVAMLQAFPQV 207
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQIL---------ASHN----RITIVGDDDQSIF 515
+ Y+ ++ ++VDE+QDT+ QY L++ L A H + +VGD DQSI+
Sbjct: 208 AEYYRRRFRHVLVDEYQDTNHAQYMLVRELVGGTADGEDADHRVAPAELCVVGDADQSIY 267
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I + F +D+ + + I L +NYRST+ I+ AA+S+I N R + K + TD+
Sbjct: 268 AFRGATIRNIEEFERDYPDARTILLEQNYRSTQNILSAANSVISKNTGRRE-KRLWTDSG 326
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G I NE + +F+ +I + +G A +G +A+ YR S + + F
Sbjct: 327 EGELITGYVADNEHDEASFVASEIDKLVDSGDA---KFGDVAVFYRTNNSSRALEEIFIR 383
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY +K VR I+A LR D RR+ ++ + D
Sbjct: 384 LGVPYKVVGGVRFYERKEVRDIVAYLRVLANEDDTVSLRRILNT-------PRRGIGDRA 436
Query: 695 DKISTI----RKCSFISAACDIFGAKISGTFKRSQ--------LTQGRKVLLTLE-MISK 741
+ + R SF A D ++ RSQ L G +V+L E +
Sbjct: 437 EACVAVHSEQRGISFAEALRDGGEGRVPLLNTRSQKAIASFLELMDGLRVMLPPETTVDD 496
Query: 742 LVRREPSISAVITSVANMVPQK--YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTD 799
+V P I V V ++ Y E A D G L+ N+L SV + +D +
Sbjct: 497 VV---PDQLGDIGDVVEAVLERTGYRAELAASSDPQDGARLDNLNELVSVAREFSSDARN 553
Query: 800 FLSTKFTAAKEEGNVD-QDKKGCINVLKAFIDYISERETEHFRTQRHDN-ENSVTLTTIH 857
+ E+G+VD +D + L AF++ +S Q DN E VTL T+H
Sbjct: 554 --AAGLVEPPEDGDVDARDGEPDPGSLAAFLERVSLVADSD---QLPDNDEGVVTLMTLH 608
Query: 858 QSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV 917
+KGLE+ +VFV + + P + T + EERRL YV +TRAR++L++
Sbjct: 609 TAKGLEFPVVFVTGWEDGQFPHMRALGDP-----TELSEERRLAYVGITRARQRLYLTRA 663
Query: 918 MMDANWQLLQP-----SRFLKEIPHHL 939
+M + W QP SRFL+EIP L
Sbjct: 664 VMRSAWG--QPIQNPESRFLQEIPSDL 688
>gi|419419661|ref|ZP_13959894.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes PRP-38]
gi|379979382|gb|EIA12702.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes PRP-38]
Length = 810
Score = 268 bits (686), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 223/731 (30%), Positives = 342/731 (46%), Gaps = 96/731 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN+ Q EA +P+L+VAG GSGK G+ P +ILA+TFT
Sbjct: 42 LVDLNEPQREAVL-HAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTNK 100
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM+ R+ +VG AK + +STFHS ++++ R+ + L + F IY +R I
Sbjct: 101 AAAEMKARVVDLVGN-RAKPMWVSTFHSAAVRILRTDIDGLGISRNFSIYDDTDAKRLIT 159
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
L+ ++ L K+ F A++ + K E
Sbjct: 160 ----LVARDQNLDPKK-------------------FQPRAIM-------NWISHQKNELI 189
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D A A+ K+ D I + Y LR+ NALD+ DLI C+V +L FPEV
Sbjct: 190 APDQAVAAAKSG------NDRINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPEVR 243
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN--------------RITIVGDDDQSIF 515
++Y+ ++ ++VDE+QDT+ QY ++ L + + +VGD DQSI+
Sbjct: 244 EQYRRRFRHVLVDEYQDTNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIY 303
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I F KDF + I L +NYRST+ I+ AA++LI+ N+ R KN+ TD
Sbjct: 304 AFRGATIRNIIDFEKDFPGARTILLEQNYRSTQTILTAANNLIKVNLNRPA-KNLWTDQG 362
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G KI+ E + A++ +I E G SYG +A+ YR + F+ F
Sbjct: 363 DGDKIVGYVADTEHDEAAWVARRIDELVDEGR---TSYGQVAVFYRTNAQSRAFEDVFIR 419
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY +K VR ++ LR DD RR+ + R +
Sbjct: 420 TGLPYRVVGGVRFYERKEVRDAVSYLRAIANPSDDVSLRRILNT---PRRGIGARAEAAV 476
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+ +T R+ SF A I +I G RS + Q R + ++ +V + +
Sbjct: 477 EMFATARRISFWEALKRI--DEIDGLATRS-VNQIRAFVSLMDDHIAMVGQGKRADEIAN 533
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
S+ + Y+ E D L +L SV Q +A V + A E+GNV
Sbjct: 534 SI--LKESGYITELENSKDPQDETRLENLVELVSVAQEFVARVH---AVDIDEA-EQGNV 587
Query: 815 DQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+ + + L AF++ I+ +++ D++ VTL T+H +KGLE+D VF+
Sbjct: 588 EDLELSGDDSLPAFLEQIALVADSDQVPA---DSDGVVTLMTLHTAKGLEFDTVFITGFE 644
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSR 930
+ P + A T + EERRL YV +TRARK+LF+ + W Q PSR
Sbjct: 645 DGVFPHMRSLADA-----TELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSR 699
Query: 931 FLKEIPHHLRE 941
F+ EIP HL E
Sbjct: 700 FIDEIPEHLIE 710
>gi|25027486|ref|NP_737540.1| ATP-dependent DNA helicase [Corynebacterium efficiens YS-314]
gi|23492768|dbj|BAC17740.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens
YS-314]
Length = 825
Score = 268 bits (684), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 224/743 (30%), Positives = 359/743 (48%), Gaps = 109/743 (14%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAA 291
LN+QQ +AA + +PLLIVAG GSGK G+ P ILA+TFT AA
Sbjct: 47 GLNEQQ-KAAVEHIGSPLLIVAGAGSGKTAVLTRRIAYLMRYRGVHPQQILAITFTNKAA 105
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAIIE 350
+EMR+R+ +VG A+ + ++TFHS +++ R A+ ++ + F IY RR +
Sbjct: 106 AEMRERVADLVGP-VAQRMWVATFHSVCVRILRQQAQLVQGLNTNFTIYDSDDSRRLLTM 164
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
+ LE L +K+ S L++ ++S+ K N+
Sbjct: 165 IAKDLE----LDIKKFSARTLSS--------------------AISNLK----NELISPS 196
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
+A A +T F + + A + Y LR NA+D+ DLI V++ + P+V +
Sbjct: 197 EALADAE-RTHNPF----ETVVARVYVEYQQRLRRANAVDFDDLIGEVVRIFTEHPQVAE 251
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILASH-----NRITIVGDDDQSIFSFNGADISGF 525
Y+ ++ +++DE+QDT+ QY L+ IL + + +VGD DQSI++F GA I
Sbjct: 252 HYRRRFRHVLIDEYQDTNHAQYQLIAILVGRPDQDPSELCVVGDSDQSIYAFRGATIRNI 311
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
+ F +DF + + I L +NYRST+ I+ AA+++I N R + KN+ T G KII
Sbjct: 312 EEFERDFTDARTILLEQNYRSTQTILSAANAVISQNENR-RPKNLWTALGEGEKIIGYVA 370
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHG 644
NE + FI +I E A G SY +AI+YR S + + F +P+ + G
Sbjct: 371 DNEHDEARFIASEIDELADRG----LSYSDMAIMYRTNNSSRALEEVFIRTGVPYKVVGG 426
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVF-----------KAFLLLEKEEKKRVIDH 693
FY +K +R +IA LR D RR+ +AF+ L E
Sbjct: 427 TKFYERKEIRDVIAYLRVLENPDDTVNLRRIINTPKRGIGDRAQAFVALHAENN------ 480
Query: 694 IDKISTIRKCSFISAACDIFGAKIS--GTFKRSQLTQGRKVLLTL--EMISKL--VRREP 747
+ SF A D + G R+ + + +++ TL E++S + V P
Sbjct: 481 --------RISFGQALVDAAAGNVELLGGRGRNAVGKFNELMDTLRGELLSMVNEVTGMP 532
Query: 748 SISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTA 807
I VI+ + ++ K LE A D G L+ N+L SV + +D + ++ T
Sbjct: 533 DIGQVISRILDITGYKAELE--ASNDPQDGARLDNLNELVSVAREFSSDAANRMAYD-TM 589
Query: 808 AKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIHQSKGLEWDI 866
E +D D + L+AF++ +S Q DNE VTL T+H +KGLE+ +
Sbjct: 590 DGSEPELD-DSEPAPGSLQAFLERVSLVADAD---QIPDNEQGLVTLMTLHTAKGLEFPV 645
Query: 867 VFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW--Q 924
VF+ + + P + A + EERRL YV +TRAR++L++ M+ ++W
Sbjct: 646 VFLTGWEDGQFPHLRSLGDA-----KELAEERRLAYVGITRARQRLYVTRAMLRSSWGNP 700
Query: 925 LLQP-SRFLKEIPHHLREVQAEQ 946
+ P SRFL+E+P L + + E+
Sbjct: 701 VTNPASRFLQEVPEGLIDWRREE 723
>gi|374386665|ref|ZP_09644163.1| hypothetical protein HMPREF9449_02549 [Odoribacter laneus YIT
12061]
gi|373223615|gb|EHP45963.1| hypothetical protein HMPREF9449_02549 [Odoribacter laneus YIT
12061]
Length = 754
Score = 268 bits (684), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 214/719 (29%), Positives = 354/719 (49%), Gaps = 95/719 (13%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
+L LND Q EA P L++AG GSGK GI +ILA+TFT
Sbjct: 3 FLHELNDNQREAVL-HTEGPALVIAGAGSGKTRVLTYRIAHLLSKGIPAYHILALTFTNK 61
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQR---R 346
AA EM+ RI +VG A L + TFHS ++ R A+KL TS F IY + +
Sbjct: 62 AAREMQKRISQLVGAENASNLWMGTFHSIFSKILRFEADKLGYTSNFTIYDTQDSKNLIK 121
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
AI++ ++L ++K+ D+L G + +L + A ++ SS
Sbjct: 122 AIVKDLKL--DDKVYK----PNDVL---GRISMAKNNLIVAQA---YAQSS--------- 160
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
+ A A+ + P + A I ++Y + + +D+ DL+ + L FP
Sbjct: 161 ---RITNADAAARKP---------MIAEIYKHYQMRCKQSDTMDFDDLLLQTNILFRDFP 208
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGF 525
EV +YQ ++ I+VDE+QDT+ QY +++ L+ SH+ I +VGDD QSI+SF GA I
Sbjct: 209 EVLAKYQQKFRYILVDEYQDTNYSQYLIIKKLSESHHNICVVGDDAQSIYSFRGARIENI 268
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
+FR D+ ++K +L +NYRST IV AA+S+I N ++ K + ++N G KI +
Sbjct: 269 LNFRNDYPDFKIFKLEQNYRSTTTIVNAANSIISKNKEQIP-KRIFSENEEGEKIKVLRA 327
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-G 644
++ + + ++I + A+ Y AILYR ++ + A R+R IP+ I+ G
Sbjct: 328 LSDKEEGFQVTNEIFKMANYEQE---EYSDFAILYRTNAQSRILEEALRKRNIPYKIYGG 384
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCS 704
+FY++K ++ ++A R ++ D+ ++R+ + ID I +I+ + S
Sbjct: 385 QSFYQRKEIKDLLAYFRLSVNQNDEEAFKRIIN---YPRRGIGDTTIDKIREIAQQHRVS 441
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKY 764
+ C++ K++G+F S LT+ L +E ++ + E + T
Sbjct: 442 MWTVLCNL--EKVAGSFNNSSLTKLNNFRLLIEKFAERSQEENAYDVACT---------- 489
Query: 765 LLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINV 824
+++ + D E + +Q LL + DF T + K+G +
Sbjct: 490 IVQSSGITDDLSNDSTPEGVSRKENIQELLNAIKDFSETAY------------KEGFSDK 537
Query: 825 LKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFN 884
L F++ ++ + T++ ++N VTL TIH +KGLE+ VF+ E P
Sbjct: 538 LATFLEGVALLTDQD--TEKPGDDNKVTLMTIHAAKGLEFPNVFITGIEEELFPAQQ--- 592
Query: 885 GAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDA-NWQLL--QPSRFLKEI-PHHL 939
A N + ++EEERRL YVA+TRA KK+ + Y N Q++ +PSRF+ EI PH L
Sbjct: 593 CASNPQ--ALEEERRLFYVALTRAEKKVVMSYATTRYRNGQIISTRPSRFIAEIDPHFL 649
>gi|259507108|ref|ZP_05750008.1| ATP-dependent helicase PcrA [Corynebacterium efficiens YS-314]
gi|259165386|gb|EEW49940.1| ATP-dependent helicase PcrA [Corynebacterium efficiens YS-314]
Length = 824
Score = 268 bits (684), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 224/743 (30%), Positives = 359/743 (48%), Gaps = 109/743 (14%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAA 291
LN+QQ +AA + +PLLIVAG GSGK G+ P ILA+TFT AA
Sbjct: 46 GLNEQQ-KAAVEHIGSPLLIVAGAGSGKTAVLTRRIAYLMRYRGVHPQQILAITFTNKAA 104
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAIIE 350
+EMR+R+ +VG A+ + ++TFHS +++ R A+ ++ + F IY RR +
Sbjct: 105 AEMRERVADLVGP-VAQRMWVATFHSVCVRILRQQAQLVQGLNTNFTIYDSDDSRRLLTM 163
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
+ LE L +K+ S L++ ++S+ K N+
Sbjct: 164 IAKDLE----LDIKKFSARTLSS--------------------AISNLK----NELISPS 195
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
+A A +T F + + A + Y LR NA+D+ DLI V++ + P+V +
Sbjct: 196 EALADAE-RTHNPF----ETVVARVYVEYQQRLRRANAVDFDDLIGEVVRIFTEHPQVAE 250
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILASH-----NRITIVGDDDQSIFSFNGADISGF 525
Y+ ++ +++DE+QDT+ QY L+ IL + + +VGD DQSI++F GA I
Sbjct: 251 HYRRRFRHVLIDEYQDTNHAQYQLIAILVGRPDQDPSELCVVGDSDQSIYAFRGATIRNI 310
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
+ F +DF + + I L +NYRST+ I+ AA+++I N R + KN+ T G KII
Sbjct: 311 EEFERDFTDARTILLEQNYRSTQTILSAANAVISQNENR-RPKNLWTALGEGEKIIGYVA 369
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHG 644
NE + FI +I E A G SY +AI+YR S + + F +P+ + G
Sbjct: 370 DNEHDEARFIASEIDELADRG----LSYSDMAIMYRTNNSSRALEEVFIRTGVPYKVVGG 425
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVF-----------KAFLLLEKEEKKRVIDH 693
FY +K +R +IA LR D RR+ +AF+ L E
Sbjct: 426 TKFYERKEIRDVIAYLRVLENPDDTVNLRRIINTPKRGIGDRAQAFVALHAENN------ 479
Query: 694 IDKISTIRKCSFISAACDIFGAKIS--GTFKRSQLTQGRKVLLTL--EMISKL--VRREP 747
+ SF A D + G R+ + + +++ TL E++S + V P
Sbjct: 480 --------RISFGQALVDAAAGNVELLGGRGRNAVGKFNELMDTLRGELLSMVNEVTGMP 531
Query: 748 SISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTA 807
I VI+ + ++ K LE A D G L+ N+L SV + +D + ++ T
Sbjct: 532 DIGQVISRILDITGYKAELE--ASNDPQDGARLDNLNELVSVAREFSSDAANRMAYD-TM 588
Query: 808 AKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIHQSKGLEWDI 866
E +D D + L+AF++ +S Q DNE VTL T+H +KGLE+ +
Sbjct: 589 DGSEPELD-DSEPAPGSLQAFLERVSLVADAD---QIPDNEQGLVTLMTLHTAKGLEFPV 644
Query: 867 VFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW--Q 924
VF+ + + P + A + EERRL YV +TRAR++L++ M+ ++W
Sbjct: 645 VFLTGWEDGQFPHLRSLGDA-----KELAEERRLAYVGITRARQRLYVTRAMLRSSWGNP 699
Query: 925 LLQP-SRFLKEIPHHLREVQAEQ 946
+ P SRFL+E+P L + + E+
Sbjct: 700 VTNPASRFLQEVPEGLIDWRREE 722
>gi|422524952|ref|ZP_16600960.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL053PA2]
gi|315077282|gb|EFT49344.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL053PA2]
Length = 810
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 216/738 (29%), Positives = 345/738 (46%), Gaps = 110/738 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN+ Q EA +P+L+VAG GSGK G+ P +ILA+TFT
Sbjct: 42 LVDLNEPQREAVL-HAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTNK 100
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM+ R+ +VG AK + +STFHS ++++ R+ ++L + F IY +R I
Sbjct: 101 AAAEMKARVVDLVGN-RAKPMWVSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLIT 159
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++T D + ++ F + + K E
Sbjct: 160 --------------------LVTRDQN----------LDPKKFQPRAIMNWISHQKNELI 189
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D A A+ K+ D I + Y LR+ NALD+ DLI C+V +L FPEV
Sbjct: 190 APDQAVAAAKSG------NDRINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPEVR 243
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN--------------RITIVGDDDQSIF 515
++Y+ ++ ++VDE+QDT+ QY ++ L + + +VGD DQSI+
Sbjct: 244 EQYRRRFRHVLVDEYQDTNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIY 303
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I F K F + I L +NYRST+ I+ AA++LI+ N+ R KN+ TD
Sbjct: 304 AFRGATIRNIIDFEKGFPGARTILLEQNYRSTQTILTAANNLIKVNLNRPA-KNLWTDQG 362
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G KI+ E + A++ +I E G SYG +A+ YR + F+ F
Sbjct: 363 DGDKIVGYVADTEHDEAAWVARRIDELVDEGR---TSYGQVAVFYRTNAQSRAFEDVFIR 419
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY +K VR ++ LR DD RR+ + R +
Sbjct: 420 TGLPYRVVGGVRFYERKEVRDAVSYLRAIANPSDDVSLRRILNT---PRRGIGARAEAAV 476
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLE----MISKLVRREPSIS 750
+ +T R+ SF A I +I G RS + Q R + ++ M+ + R
Sbjct: 477 EMFATARRISFWEALKRI--DEIDGLATRS-VNQIRAFVSLMDDHIAMVGQGKR------ 527
Query: 751 AVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTA--- 807
A+ + L E + + + K ++ L ++++ L++ +F++
Sbjct: 528 ------ADEIANSILKESGYITELENSKDPQDETRLENLVE-LVSVAQEFVARVHAVDID 580
Query: 808 AKEEGNVDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDI 866
E+GNV+ + + L AF++ I+ +++ D++ VTL T+H +KGLE+D
Sbjct: 581 EAEQGNVEDLELSGDDSLPAFLEQIALVADSDQVPA---DSDGVVTLMTLHTAKGLEFDT 637
Query: 867 VFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL 926
VF+ + P + A T + EERRL YV +TRARK+LF+ + W
Sbjct: 638 VFITGFEDGVFPHMRSLADA-----TELSEERRLAYVGITRARKQLFVSRASVRTMWGQA 692
Query: 927 Q---PSRFLKEIPHHLRE 941
Q PSRF+ EIP HL E
Sbjct: 693 QYNPPSRFIDEIPEHLIE 710
>gi|375013664|ref|YP_004990652.1| DNA/RNA helicase [Owenweeksia hongkongensis DSM 17368]
gi|359349588|gb|AEV34007.1| DNA/RNA helicase, superfamily I [Owenweeksia hongkongensis DSM
17368]
Length = 792
Score = 267 bits (682), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 216/719 (30%), Positives = 352/719 (48%), Gaps = 101/719 (14%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTT 288
Y++ LN Q EA + P++++AG GSGK + P NIL++TFT
Sbjct: 15 YIKQLNPSQREAVV-NTEGPVMVIAGAGSGKTRVLTYRIAYLMDEKKVDPFNILSLTFTN 73
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA EM++RIG IVG AK L + TFHS ++ R A+KL S F IY R+ I
Sbjct: 74 KAAKEMKERIGKIVGGNEAKNLWMGTFHSVFAKILRFEADKLGFPSNFTIYDAEDARKVI 133
Query: 349 IEAVRLLENEK-ILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFK--LCQYNK 405
++ +K + VK +++ +SSFK L +
Sbjct: 134 ANVIKEKNLDKEVYKVKSVAS-------------------------RISSFKNALITPKE 168
Query: 406 FERDG-MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLST 464
+ R + A+ + P +GD I Y A+D+ DL+ + LL
Sbjct: 169 YLRSPELQENDAAARMPM----MGD-----IYRAYAERCFRSGAMDFDDLLLYTFILLRK 219
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADIS 523
FP+V +YQD ++ I+VDE+QDT+ QY +++ LA+ + I +VGDD QSI++F GA+I
Sbjct: 220 FPDVLAKYQDRFRYIMVDEYQDTNHAQYLIVKSLANRYGNICVVGDDAQSIYAFRGANIR 279
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
++++D+ + + +L +NYRST+ IV AA+SLI+ N ++ KNV TDNS G +I+I
Sbjct: 280 NILNYQRDYEDVRVFKLEQNYRSTKTIVGAANSLIKKNKEQLD-KNVWTDNSDGEQIVIN 338
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH 643
+ ++ + +++ I E N I + AILYR + + +FR R IP+ I+
Sbjct: 339 KTVSDTDEASYVARTIFEK--NMQEHI-PFSDFAILYRTNAQSRAMEESFRRRNIPYRIY 395
Query: 644 -GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID-HIDKISTIR 701
G++FY++K V+ ++A +R T+ D+ +RRV K+ + D ++KI+
Sbjct: 396 GGLSFYQRKEVKDLLAYVRLTINSNDEEAFRRVINY-------PKRGIGDTTLEKITVAA 448
Query: 702 KCSFISA--ACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANM 759
+ +S C G S + + + + ++ L + + +A
Sbjct: 449 NANGVSVWEICSNLGYYQSVGLNKPTTVKIQDFVTKIQSFKALAKEAEAF-----DLATH 503
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
+ + L + D + +N +Q LL V +F T+ E+GN
Sbjct: 504 IAKTSGLLRELSQDKTPEGISRTEN-----IQELLNSVKEF--TENQKEIEDGNPS---- 552
Query: 820 GCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
L F++ ++ T+ T DNE V+L TIH +KGLE+ IVF+ E+ P
Sbjct: 553 -----LSGFMEDVA-LLTDSDNTTDEDNE-KVSLMTIHLAKGLEFPIVFIVGMEESLFPS 605
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEI 935
+ + + +EEERRL YVA+TRA K+ ++ Y M W L +PSRFL+EI
Sbjct: 606 MMAMSSRAD-----LEEERRLFYVALTRAEKEAYLTYAQMRYRWGKLIDCEPSRFLQEI 659
>gi|417933114|ref|ZP_12576448.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes
SK182B-JCVI]
gi|340773033|gb|EGR95528.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes
SK182B-JCVI]
Length = 810
Score = 266 bits (681), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 219/740 (29%), Positives = 346/740 (46%), Gaps = 118/740 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN Q EA S P+L+VAG GSGK G+ P +ILA+TFT
Sbjct: 42 LADLNGPQREAVLHSGS-PVLVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTNK 100
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM+ R+ +VG AK + +STFHS ++++ R+ ++L+ + F IY +R I
Sbjct: 101 AAAEMKARVVDLVGN-RAKPMWVSTFHSAAVRMLRADIDRLDISRNFSIYDDADAKRLIT 159
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
L+ +K L K+ F A++ ++ Q N+
Sbjct: 160 ----LVTRDKNLDPKK-------------------FQPRAIM-----NWISNQKNELIAP 191
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
VA A R D A + Y LR+ NALD+ DLI C+V +L FPEV
Sbjct: 192 DQAVATA--------RSGNDRTNAEVYGEYQRRLRAANALDFDDLIMCTVTMLRRFPEVR 243
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN--------------RITIVGDDDQSIF 515
++YQ ++ ++VDE+QDT+ QY ++ L + + +VGD DQSI+
Sbjct: 244 EQYQRRFRHVLVDEYQDTNTAQYQFIRELCGDDAPGATDGAPSVDSPELMVVGDSDQSIY 303
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I F KDF + I L +NYRST+ I+ AA++LI+ N R KN+ TD
Sbjct: 304 AFRGATIRNIIDFEKDFPGARTILLEQNYRSTQTILTAANNLIKVNPNRLA-KNLWTDQG 362
Query: 576 HGSKI---IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTA 632
G I + H+E A A ID++++ SYG +A+ YR + F+
Sbjct: 363 DGDNIVGYVADTDHDEAAWVARRIDELVDEGR------TSYGQVAVFYRTNAQSRAFEDV 416
Query: 633 FRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI 691
F +P+ + GV FY +K VR ++ LR DD RR+ + R
Sbjct: 417 FIRTGLPYRVVGGVKFYERKEVRDAVSYLRAIANPSDDVSLRRILNT---PRRGIGARAE 473
Query: 692 DHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISA 751
+D +T R+ SF A I +I G RS + Q R + ++ +V +
Sbjct: 474 AAVDMFATARRISFWEALKRI--DEIDGLATRS-VNQIRAFVSLMDDHIAMVEQGKRADE 530
Query: 752 VITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEE 811
+ +S+ L E + + + K ++ L ++++ + +S +F A
Sbjct: 531 IASSI--------LKESGYIDELENSKDPQDETRLENLVELV------SVSQEFVARVHA 576
Query: 812 GNVDQDKKGCI--------NVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGL 862
++D+ ++G + + L AF++ I+ +++ D++ VTL T+H +KGL
Sbjct: 577 VDIDEAEQGDVEDLELSGDDSLSAFLEQIALVADSDQVPA---DSDGVVTLMTLHTAKGL 633
Query: 863 EWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDAN 922
E+D VF+ + P + A T + EERRL YV +TRARK+LF+ +
Sbjct: 634 EFDTVFITGFEDGVFPHMRSLADA-----TELSEERRLAYVGITRARKRLFLSRAAVRTM 688
Query: 923 W---QLLQPSRFLKEIPHHL 939
W Q PSRF+ EIP L
Sbjct: 689 WGQPQYNPPSRFIDEIPKRL 708
>gi|158319600|ref|YP_001512107.1| ATP-dependent DNA helicase PcrA [Alkaliphilus oremlandii OhILAs]
gi|158139799|gb|ABW18111.1| ATP-dependent DNA helicase PcrA [Alkaliphilus oremlandii OhILAs]
Length = 739
Score = 266 bits (680), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 225/728 (30%), Positives = 353/728 (48%), Gaps = 118/728 (16%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTF 286
S+Y +LN Q A P+L++AG GSGK G+SP +ILA+TF
Sbjct: 17 SRY-HTLNPMQKNAVLT-TEGPVLVLAGAGSGKTRVLTHRIAYLVEEKGVSPYHILAITF 74
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR 346
T AA EM++R+ +++G ++L +STFHS +++ R +KL F+IY Q+
Sbjct: 75 TNKAAKEMKERVEALLGDY-HRDLWVSTFHSSCVRILRMEIDKLGYEKNFVIYDTTDQQV 133
Query: 347 AIIEAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNK 405
+ + ++ +EK+ + I ++ G + L N L
Sbjct: 134 LMKDCLKKFNLDEKLFQPRMILNEI-------GRAKDLLIGPNEYL-------------- 172
Query: 406 FERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
E G D FR ++ A I Y ++S NALD+ DLI +V+L T
Sbjct: 173 -EEFGND-----------FR---NQKIAEIYRLYQDRMKSNNALDFDDLIMKTVQLFQTH 217
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISG 524
P V + YQ+ +K I+VDEFQDT+ QY+L+ +LA SH + +VGDDDQSI+ + GADI
Sbjct: 218 PTVLRYYQNKFKYILVDEFQDTNMAQYTLISLLAKSHGNLCVVGDDDQSIYGWRGADIRN 277
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
F KDF N + ++L +NYRST+ I++AA+ ++ +N R + K + TDN G I
Sbjct: 278 ILGFEKDFPNTQVVKLEQNYRSTKSILDAANMVVANNTDR-KSKKLWTDNQDGEIIQYYR 336
Query: 585 CHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI 642
+NE + +FI I L N P Y AILYR + + +R IP+ I
Sbjct: 337 ANNEYDEASFISGTIEKLNEEENRP-----YSEFAILYRTNAQSRALEEMLMKRAIPYKI 391
Query: 643 H-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
+ G FY +K ++ I+A LRT DD +R+ + ++ + ID D+ + +
Sbjct: 392 YSGTRFYDRKEIKDILAYLRTIENPVDDVSVKRIIN---VPKRGIGIKSIDRFDEYAEGK 448
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
SF A + T + Q + E+I L R+ + SV ++V
Sbjct: 449 NESFFGALLHVDQMPDQSTRVKVQTNK------FTELIQSLRDRQDEM-----SVTDIVK 497
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
+ Y E+ +D L+ ED + + + ++ +FLS D D+
Sbjct: 498 EIY--EKTGYID----ALMAED---KIEAESRIENLQEFLSV---------TKDFDENSE 539
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
+ L+ F+ S T +D EN+VTL T+H +KGLE+ +VF+ E+ P
Sbjct: 540 VKTLEEFLARTSLETT----LDENDEENTVTLMTLHSAKGLEFPVVFIPGMEESIFP--- 592
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQPSRFLKE 934
A++ + ++EEERRL YV +TRAR+KL++ LY +AN SRFL E
Sbjct: 593 ---SAMSLQENNLEEERRLCYVGITRAREKLYMSHAMTRTLYGRTNAN----PISRFLGE 645
Query: 935 IPHHLREV 942
IP L ++
Sbjct: 646 IPEELIQI 653
>gi|350567875|ref|ZP_08936281.1| ATP-dependent DNA helicase PcrA [Propionibacterium avidum ATCC
25577]
gi|348662127|gb|EGY78796.1| ATP-dependent DNA helicase PcrA [Propionibacterium avidum ATCC
25577]
Length = 810
Score = 265 bits (678), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 221/731 (30%), Positives = 342/731 (46%), Gaps = 96/731 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN+ Q EA P+L+VAG GSGK G+ P +ILA+TFT
Sbjct: 42 LADLNEPQREAVL-HAGAPVLVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTNK 100
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM+ R+ +VG AK + +STFHS ++++ R+ ++L+ + F IY +R I
Sbjct: 101 AAAEMKARVVDLVGN-RAKPMWVSTFHSAAVRMLRTDIDRLDISRNFSIYDDTDAKRLIT 159
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
L+ ++ L K+ F A++ ++ Q N+
Sbjct: 160 ----LVARDQNLDPKK-------------------FQPRAIM-----NWISNQKNELITP 191
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ AS D A + Y LR+ NALD+ DLI C+V LL FP+V
Sbjct: 192 DQALENASSGN--------DRTNAEVYAEYQRRLRAANALDFDDLIMCTVTLLRQFPDVR 243
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN--------------RITIVGDDDQSIF 515
++Y+ ++ ++VDE+QDT+ QY ++ L + + +VGD DQSI+
Sbjct: 244 EQYRRRFRHVLVDEYQDTNTAQYQFIRELCGDDPVPLDDGARSVDSPELMVVGDSDQSIY 303
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I F KDF + I L +NYRST+ I+ AA++LI+ N R KN+ TD
Sbjct: 304 AFRGATIRNILDFEKDFPGARTILLEQNYRSTQTILTAANNLIKVNPNRPA-KNLWTDQG 362
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G KI+ E + A++ + E G SYG +A+ YR + F+ F
Sbjct: 363 DGDKIVGYVADTEHDEAAWVARRTDELVDEGR---TSYGQVAVFYRTNAQSRAFEDVFIR 419
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY +K VR ++ LRT DD RR+ + R +
Sbjct: 420 TGLPYRVVGGVKFYERKEVRDAVSYLRTIANPSDDVSLRRILNT---PRRGIGARAEAAV 476
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+ +T R+ SF A I +I+G RS + Q R + +E +V + + +
Sbjct: 477 EMFATARRISFWEALRRI--DEINGLATRS-VNQIRAFVSLMEDHVAMVEQGRRADEITS 533
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
S+ + Y+ E D L +L SV Q +A V + AA EG+V
Sbjct: 534 SI--LKESGYIAELENSKDPQDETRLENLVELVSVAQEFVARVH---AIDIDAAA-EGDV 587
Query: 815 DQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+ + + L AF++ I+ +++ T ++ VTL T+H +KGLE+D VF+
Sbjct: 588 EDLELSADDSLPAFLEQIALVADSDQLPT---GSDGVVTLMTLHTAKGLEFDTVFITGFE 644
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSR 930
+ P + A T + EERRL YV +TRARK+LF+ + W Q PSR
Sbjct: 645 DGVFPHMRSLADA-----TELAEERRLAYVGITRARKQLFLSRAAVRTMWGQAQYNPPSR 699
Query: 931 FLKEIPHHLRE 941
F+ EIP L E
Sbjct: 700 FVDEIPERLIE 710
>gi|373500769|ref|ZP_09591142.1| hypothetical protein HMPREF9140_01260 [Prevotella micans F0438]
gi|371951727|gb|EHO69570.1| hypothetical protein HMPREF9140_01260 [Prevotella micans F0438]
Length = 806
Score = 265 bits (676), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 228/739 (30%), Positives = 347/739 (46%), Gaps = 104/739 (14%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFT 287
S L LND Q EA + P L++AG GSGK G+ P NILA+TFT
Sbjct: 7 SSLLNELNDMQREAVMYN-DGPSLVIAGAGSGKTRVLTYKIAYLLEQGMKPWNILALTFT 65
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM+DR+ +++ +A++L + TFHS ++ R AE + +F IY R
Sbjct: 66 NKAAREMKDRVANLINYESARQLFMGTFHSVFARILRIEAEHIGFGRDFTIYDEADSRS- 124
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
LL+N ++K ++ D Y R S+ N + + ++ +
Sbjct: 125 ------LLKN----IIKGMALDDKLYKPAAIYSRISMAKNNLVTAEAYAA---------D 165
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGA--AILENYNGILRSCNALDYHDLISCSVKLLSTF 465
RD + R + IGA I + Y R NA+D+ DL+ + L
Sbjct: 166 RDAIQ------------RDLKSNIGALWQIFQTYQARCRQANAMDFDDLLLNTFLLFRDN 213
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
EV +Y +++ I+VDE+QDT+ Q S+L ++SH +I +VGDD QSI+SF GA+I
Sbjct: 214 EEVKNKYARAFEYILVDEYQDTNFAQVSILNQISSHQGKICVVGDDYQSIYSFRGANIDN 273
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SFR+ K +L RNYRSTR IVEAA+SL++HN +R K+V ++N G +++ K
Sbjct: 274 ILSFREQHSQAKLFKLERNYRSTRKIVEAANSLMKHN-RRQIPKDVYSENDDGERVVYKP 332
Query: 585 CHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI 642
C+++ + A + +I + G +Y AILYR + F+ FR R IP+ I
Sbjct: 333 CYSDKEEAAVVTSQIERIRQTEGG-----TYADFAILYRTNAQSRTFEEEFRRRDIPYRI 387
Query: 643 H-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
+ G++FY++K ++ IA R + D+ RRV + I I ++
Sbjct: 388 YGGLSFYQRKEIKDAIAYFRLIINPHDEEAIRRVIN---YPARGIGAATIAKIASMAMEN 444
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ SF A +SG ++LT R +MI++ I+ A +
Sbjct: 445 QTSFWDAIAHPEVIGLSGAIV-AKLTAFR------DMINEF------IACKDEEDAFTLA 491
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
+K + D G+ ED + L+ L+A + +F+ T A EEG Q
Sbjct: 492 RKIIFGTGMEADIKQGR-EQEDIARQENLEALMAALQEFVET----ATEEGRTSQ----- 541
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV- 880
+Y+ E ++ DNE VTL TIH +KGLE+ VFV E P +
Sbjct: 542 ----IYLENYLQEVALYSDLDKKDDNEPRVTLMTIHAAKGLEFPTVFVVGLEENLFPSIM 597
Query: 881 --HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSRFLKEI 935
H N +EEERRLLYVA+TRA + F+ + Q PSRFL++I
Sbjct: 598 ATHSMN--------QLEEERRLLYVAITRAERHCFLTNAKNRYQYGKPQFCTPSRFLRDI 649
Query: 936 PHHLREVQAE-QSVQDQHE 953
+ + E S DQ E
Sbjct: 650 APEFIDGEVEVNSFADQVE 668
>gi|225023085|ref|ZP_03712277.1| hypothetical protein CORMATOL_03133 [Corynebacterium matruchotii
ATCC 33806]
gi|224944308|gb|EEG25517.1| hypothetical protein CORMATOL_03133 [Corynebacterium matruchotii
ATCC 33806]
Length = 894
Score = 265 bits (676), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 216/735 (29%), Positives = 339/735 (46%), Gaps = 99/735 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN QQ AA +PLLIVAG GSGK G++P ILA+TFT
Sbjct: 96 IADLNPQQ-RAAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLLRMRGVAPGQILAITFTNK 154
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EMRDR+ +VG TA + ++TFHS +++ R A L + F IY +R
Sbjct: 155 AAAEMRDRVIDLVGP-TATRMWVATFHSACVRILREQAHLLPGLNTNFTIYDADDSKR-- 211
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
++ I+ D+ +NA F K E
Sbjct: 212 -------------LLGMIAKDL---------------QINAQKFPPRLLAAAISALKTEL 243
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D A A R D A + Y LR+ NALD+ DLI +V++ +T PE+
Sbjct: 244 TDPDAASDEA---AATRNPFDRTIAEVYTEYQRRLRAANALDFDDLIGETVRVFTTHPEI 300
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQIL----ASHNRITIVGDDDQSIFSFNGADISG 524
Y+ ++ +++DE+QDT+ QY L+ L + + +++VGD DQSI++F GA I
Sbjct: 301 AAYYRKRFRHVLIDEYQDTNHAQYVLISTLVGIGSDASELSVVGDSDQSIYAFRGATIRN 360
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+ F +D+ + I L +NYRST+ I+ AA+++I HN R + K + TD+ G+KI
Sbjct: 361 IEEFERDYPQARTILLEQNYRSTQNILSAANAVISHNHGRRE-KKLWTDHGAGAKITGYV 419
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
NE + FI +I G YG IA++YR S + + F IP+ +
Sbjct: 420 ADNEHDEARFIATEIDALFDTG----VGYGDIAVMYRTNNSSRAIEEVFIRTGIPYKVVG 475
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
G FY +K +R +IA LR D+ RR+ + R I ++ +
Sbjct: 476 GTRFYERKEIRDLIAYLRVLDNPTDEISLRRIINT---PRRGIGDRAIATVNLYAENFGM 532
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKL----------VRREPSISAVI 753
SF A D K++ R++ + LE++ L + P I V+
Sbjct: 533 SFADALVDAAHGKVTALGTRAK----NAIAAFLELMDGLRADAAEATNAITGLPDIGVVV 588
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
+ + + K LE A D G L+ N+L SV + ++ + ++ A EGN
Sbjct: 589 SRILDATGYKAELE--ASTDPQDGARLDNLNELVSVAREFSSEAANLMAYAAMGAGVEGN 646
Query: 814 ------VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIV 867
V + + G I+ + +++ + D+ N VTL T+H +KGLE+ +V
Sbjct: 647 DPAEPMVGEPQPGSIHAFLEKVSLVADSD-----QLPDDSTNVVTLMTLHTAKGLEFPVV 701
Query: 868 FVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW--QL 925
F+ + + P + G E + EERRL YV +TRAR+ L++ M+ A+W +
Sbjct: 702 FLIGWEDGQFPHLRAL-GDPQE----LAEERRLAYVGITRARETLYLTRAMLRASWGNAV 756
Query: 926 LQP-SRFLKEIPHHL 939
P SRFL++IP L
Sbjct: 757 ANPASRFLEDIPEKL 771
>gi|386069959|ref|YP_005984855.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes ATCC
11828]
gi|422467621|ref|ZP_16544173.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL110PA4]
gi|422469066|ref|ZP_16545596.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL110PA3]
gi|314982168|gb|EFT26261.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL110PA3]
gi|315090399|gb|EFT62375.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL110PA4]
gi|353454326|gb|AER04845.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes ATCC
11828]
Length = 810
Score = 264 bits (675), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 214/734 (29%), Positives = 345/734 (47%), Gaps = 102/734 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN+ Q EA +P+L+VAG GSGK G+ P +ILA+TFT
Sbjct: 42 LADLNEPQREAVL-HAGSPVLVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTNK 100
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM+ R+ +VG AK + +STFHS ++++ R+ ++L + F IY
Sbjct: 101 AAAEMKARVVDLVGN-RAKPMWVSTFHSAAVRILRTDIDRLGISRNFSIYDDTD------ 153
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
KR++T ++ D + ++ F + + K E
Sbjct: 154 -------------AKRLTT-LVARDQN----------LDPKKFQPRAIMNWISHQKNELI 189
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D A A+ K+ D I + Y LR+ NALD+ DLI +V +L FPEV
Sbjct: 190 APDQAVAAAKSG------NDRINGDVYAEYQRRLRAANALDFDDLIMYTVTVLRQFPEVR 243
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN--------------RITIVGDDDQSIF 515
++Y+ ++ ++VDE+QDT+ QY ++ L + + +VGD DQSI+
Sbjct: 244 EQYRRRFRHVLVDEYQDTNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIY 303
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I F KDF + I L +NYRST+ I+ AA++LI+ N+ R KN+ TD
Sbjct: 304 AFRGATIRNIIDFEKDFPGARTILLEQNYRSTQTILTAANNLIKVNLNRPA-KNLWTDQG 362
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G KI+ E + A++ +I E G SYG +A+ YR + F+ F
Sbjct: 363 DGDKIVGYVADTEHDEAAWVARRIDELVDEGR---TSYGQVAVFYRTNAQSRAFEDVFIR 419
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY +K VR ++ LR DD RR+ + R +
Sbjct: 420 TGLPYRVVGGVRFYERKEVRDAVSYLRAIANPSDDVSLRRILNT---PRRGIGARAEAAV 476
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+ +T R+ SF A I +I G RS + Q R + ++ +V + + +
Sbjct: 477 EMFATARRISFWEALKRI--DEIDGLATRS-VNQIRAFVSLMDDHIAMVEQGKRADEIAS 533
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTA---AKEE 811
S+ L E + + + K ++ L ++++ L++ +F++ E+
Sbjct: 534 SI--------LKESGYITELENSKDPQDETRLENLIE-LVSVAQEFVARVHAVDIDEAEQ 584
Query: 812 GNVDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVA 870
GNV+ + + L AF++ I+ +++ D++ VTL T+H +KGLE+D VF+
Sbjct: 585 GNVEDLESSGDDSLPAFLEQIALVADSDQVPA---DSDGVVTLMTLHTAKGLEFDTVFIT 641
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ--- 927
+ P + A T + EERRL YV +TRARK+LF+ + W Q
Sbjct: 642 GFEDGVFPHMRSLADA-----TELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNP 696
Query: 928 PSRFLKEIPHHLRE 941
PSRF+ EIP L E
Sbjct: 697 PSRFIDEIPERLIE 710
>gi|255994849|ref|ZP_05427984.1| ATP-dependent DNA helicase PcrA [Eubacterium saphenum ATCC 49989]
gi|255993562|gb|EEU03651.1| ATP-dependent DNA helicase PcrA [Eubacterium saphenum ATCC 49989]
Length = 753
Score = 264 bits (674), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 227/747 (30%), Positives = 355/747 (47%), Gaps = 117/747 (15%)
Query: 239 DEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILA 283
+E S+ L+SLND Q + A PLL++AG GSGK + P NILA
Sbjct: 8 NEESEILKSLNDMQKQGAV-TTEGPLLVLAGAGSGKTKMMTHRMAYLILEKNVDPQNILA 66
Query: 284 MTFTTAAASEMRDRIGSIV---GKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYG 340
+TFT AA+EM+ R ++ G+ + K L I TFH+ L + ++HA L FLIY
Sbjct: 67 VTFTNKAANEMKQRAEFLIHSRGR-SLKGLWIKTFHATCLAILKNHAGALGYGENFLIYT 125
Query: 341 HGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKL 400
Q+ A+ A++ E + K M T+ F S
Sbjct: 126 ASDQKAAVKRAIKECE----ISPKEYPVKMFTS------------------FISK----- 158
Query: 401 CQYNKFERDGM-DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSV 459
C+ K D + D S KT +I + E Y +L++ NA+D+ DL+ +V
Sbjct: 159 CKSQKIVPDEVFDYFDDSFKT---------QISQQVYEAYQNVLKANNAMDFDDLLLNTV 209
Query: 460 KLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFN 518
L S +P++ + Y + +K I+VDE+QDTS++Q+ L+ LA H I +VGDDDQ I+ +
Sbjct: 210 ILFSKYPDILKIYAERFKYIMVDEYQDTSSLQFELINKLAHVHKNICVVGDDDQCIYEWR 269
Query: 519 GADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGS 578
GA I SF K + K I+L RNYRST+ I++AA ++I +N KR + K + T + G
Sbjct: 270 GATIENILSFEKVYKGTKIIKLERNYRSTKNILDAAHAVISNNSKRKE-KKLWTGSVEGE 328
Query: 579 KIIIKECHNEDAQCAFIIDKILEH-ASNGPASICSYGSIAILYRRQVSGKVFQTAFRERK 637
KI I+ N A+ FI+DKI + A G +Y IAILYR ++F+ A +
Sbjct: 329 KISIEVYENAHAEAEFIVDKIRQAVAEEGK----TYKDIAILYRNNSQSRLFEEALKRWD 384
Query: 638 IPFNI-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDK 696
+P+ I G+ FY + + ++A LR T DD + R + K+ ++ +
Sbjct: 385 VPYRILSGIRFYERSEIVDMLAYLRVTENPFDDIAFLRCINE---PARGLGKKALEKVAS 441
Query: 697 ISTIRKCS-FISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITS 755
+ R S F D A++S +R E I + + + T
Sbjct: 442 FARERGISLFAGLLMDECLAELSAAARRG----------AEEFIKMIKHAQDMLLDENTR 491
Query: 756 VANMVPQKYLLEQRAVV-DFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
++N++ KY++E L D L ++ + L+A V D +E +
Sbjct: 492 ISNVL--KYIIETSGYERKLKLADTLESDAKLENIYE-LVASVAD---------REGSSA 539
Query: 815 DQDKKGCINVLKAFIDYISERETEHFRTQRHD-NENSVTLTTIHQSKGLEWDIVFVAKAN 873
D+K ++ I IS+ HD ++V L T+H SKGLE+++VF+
Sbjct: 540 GDDEKLTLSAFLEEIALISD-------VDNHDETADAVVLMTLHSSKGLEFNVVFIPGME 592
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQ-------LL 926
E P +G ++ +EEERRL YV TRA+++LF + A W+ +
Sbjct: 593 EGIFP-----SGQGDDNPGKIEEERRLCYVGFTRAKEELF----LSAAKWRRHYYEDMYM 643
Query: 927 QPSRFLKEIPHHLREVQ-AEQSVQDQH 952
QPSRFL E+P L + E S +D++
Sbjct: 644 QPSRFLDEVPEELVKTNVVEASSRDRY 670
>gi|226187036|dbj|BAH35140.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus erythropolis PR4]
Length = 830
Score = 263 bits (672), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 226/749 (30%), Positives = 351/749 (46%), Gaps = 121/749 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LN QQ EA +PLLIVAG GSGK G++P ILA+TFT
Sbjct: 32 LEGLNPQQREAVV-HAGSPLLIVAGAGSGKTAVLTRRIAYLLAERGVTPGQILAITFTNK 90
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EMR+R+ ++VG A + +STFHS +++ R+ A L S F IY RR +
Sbjct: 91 AAAEMRERVAALVGP-RANAMWVSTFHSSCVRILRAQAALLPGLNSNFSIYDSDDSRRLL 149
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
+ LE L KR S +L T H ++ L +
Sbjct: 150 TMISKDLE----LDTKRFSARLLAT--HISNLKNELVGPEEAVV---------------- 187
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
A+ + PAE ++ A + +Y LR+ NALD+ DLI +V LL FP++
Sbjct: 188 -------AADQDPAELPRLI----AKVYGHYQQRLRAANALDFDDLIGETVALLQAFPQI 236
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQIL----------ASHNRITIVGDDDQSIFSFN 518
+ Y+ ++ ++VDE+QDT+ QY L++ L + + +VGD DQSI++F
Sbjct: 237 AEYYRRRFRHVLVDEYQDTNHAQYMLVRELVGGAGESDHAVAPAELCVVGDADQSIYAFR 296
Query: 519 GADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGS 578
GA I + F +D+ + + I L +NYRST+ I+ AA+S+I N R + K + TD+ G
Sbjct: 297 GATIRNIEEFERDYPDARTILLEQNYRSTQNILSAANSVISKNTGRRE-KRLWTDSGEGE 355
Query: 579 KIIIKECHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
I+ NE + +F+ ID++++ + IA+ YR S + + F
Sbjct: 356 LIVGYVADNEHDEASFVASEIDRLVDQGE------TKFADIAVFYRTNNSSRALEEIFIR 409
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY +K VR I+A LR D RR+ ++ + D
Sbjct: 410 LGVPYKVVGGVRFYERKEVRDIVAYLRVLANEDDTVSLRRILNT-------PRRGIGDRA 462
Query: 695 DKISTI----RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSIS 750
+ + R SF +A D K++ RSQ + + LEM+ L P+ +
Sbjct: 463 EACVAVHSEHRNISFAAALRDGAEGKVALLNTRSQ----KAIASFLEMMDGLRALLPTPA 518
Query: 751 A---------VITSVANMVPQK--YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTD 799
A I VA V ++ Y E A D G L+ N+L SV + +D +
Sbjct: 519 ADEDEPFELGDIGEVAEAVLERTGYRAELAASSDPQDGARLDNLNELVSVAREFSSDARN 578
Query: 800 FLST-----KFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENS-VTL 853
+ TAA EG D L AF++ +S Q D+++ VT+
Sbjct: 579 AAGLIDPDDEETAAMREGEPDPGS------LAAFLERVSLVADAD---QLPDSDDGVVTM 629
Query: 854 TTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLF 913
T+H +KGLE+ +VFV + + P + + EERRL YV +TRAR++L+
Sbjct: 630 MTLHTAKGLEFPVVFVTGWEDGQFPHMRALGDPAE-----LSEERRLAYVGITRARQRLY 684
Query: 914 ILYVMMDANW-QLLQ--PSRFLKEIPHHL 939
+ +M + W Q +Q SRF++EIP L
Sbjct: 685 LTRAIMRSAWGQPIQNPASRFIQEIPEDL 713
>gi|397735940|ref|ZP_10502626.1| ATP-dependent DNA helicase PcrA [Rhodococcus sp. JVH1]
gi|396928233|gb|EJI95456.1| ATP-dependent DNA helicase PcrA [Rhodococcus sp. JVH1]
Length = 786
Score = 263 bits (672), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 225/730 (30%), Positives = 340/730 (46%), Gaps = 110/730 (15%)
Query: 261 STPLLIVAGPGSGK---------------GISPSNILAMTFTTAAASEMRDRIGSIVGKA 305
+PLLIVAG GSGK G+ P ILA+TFT AA+EMR+R+ +VG
Sbjct: 4 GSPLLIVAGAGSGKTAVLTRRIAYLLAERGVMPGQILAITFTNKAAAEMRERVAHLVGP- 62
Query: 306 TAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAIIEAVRLLENEKILVVK 364
A + +STFHS +++ R+ A L S F IY RR + ++ + + K
Sbjct: 63 RANSMWVSTFHSSCVRILRAQAALLPGLNSNFSIYDADDSRRLLT----MIAKDLNIDTK 118
Query: 365 RISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDVAKASGKTPAEF 424
R S +L T H ++ L D + + K PAE
Sbjct: 119 RYSARLLAT--HISNLKNELV-----------------------DPEQASADADKDPAEL 153
Query: 425 RKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEF 484
++ A + +Y LRS NALD+ DLI +V +L FP+V + Y+ ++ ++VDE+
Sbjct: 154 PRLI----AKVYGHYQQRLRSANALDFDDLIGETVAMLQAFPQVAEYYRRRFRHVLVDEY 209
Query: 485 QDTSAMQYSLLQIL---------ASHN----RITIVGDDDQSIFSFNGADISGFDSFRKD 531
QDT+ QY L++ L A H + +VGD DQSI++F GA I + F +D
Sbjct: 210 QDTNHAQYMLVRELVGGTADGEDADHRVAPAELCVVGDADQSIYAFRGATIRNIEEFERD 269
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
+ + + I L +NYRST+ I+ AA+S+I N R + K + TD+ G I NE +
Sbjct: 270 YPDARTILLEQNYRSTQNILSAANSVISKNTGRRE-KRLWTDSGVGELITGYVADNEHDE 328
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFYRK 650
+F+ +I + +G A +G +A+ YR S + + F +P+ + GV FY +
Sbjct: 329 ASFVASEIDKLVDSGDA---KFGDVAVFYRTNNSSRALEEIFIRLGVPYKVVGGVRFYER 385
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTI----RKCSFI 706
K VR I+A LR D RR+ ++ + D + + R SF
Sbjct: 386 KEVRDIVAYLRVLANEDDTVSLRRILNT-------PRRGIGDRAEACVAVHSEQRGISFA 438
Query: 707 SAACDIFGAKISGTFKRSQ--------LTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
A D ++ RSQ L G +VLL E + V P I V
Sbjct: 439 EALRDGGEGRVPLLNTRSQKAIASFLELMDGLRVLLPPETTADDV--VPDQLGDIGDVVE 496
Query: 759 MVPQK--YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVD- 815
V ++ Y E A D G L+ N+L SV + +D + + E+G+VD
Sbjct: 497 AVLERTGYRAELAASSDPQDGARLDNLNELVSVAREFSSDARN--AAGLVEPPEDGDVDA 554
Query: 816 QDKKGCINVLKAFIDYISERETEHFRTQRHDN-ENSVTLTTIHQSKGLEWDIVFVAKANE 874
+D + L AF++ +S Q DN E VTL T+H +KGLE+ +VFV +
Sbjct: 555 RDGEPDPGSLAAFLERVSLVADSD---QLPDNDEGVVTLMTLHTAKGLEFPVVFVTGWED 611
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQP-----S 929
+ P + T + EERRL YV +TRAR++L++ +M + W QP S
Sbjct: 612 GQFPHMRALGDP-----TELSEERRLAYVGITRARQRLYLTRAVMRSAWG--QPIQNPES 664
Query: 930 RFLKEIPHHL 939
RFL+EIP L
Sbjct: 665 RFLQEIPSDL 674
>gi|229495094|ref|ZP_04388840.1| ATP-dependent DNA helicase PcrA [Rhodococcus erythropolis SK121]
gi|453067882|ref|ZP_21971167.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus qingshengii BKS
20-40]
gi|229318025|gb|EEN83900.1| ATP-dependent DNA helicase PcrA [Rhodococcus erythropolis SK121]
gi|452766501|gb|EME24746.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus qingshengii BKS
20-40]
Length = 830
Score = 263 bits (671), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 226/749 (30%), Positives = 351/749 (46%), Gaps = 121/749 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LN QQ EA +PLLIVAG GSGK G++P ILA+TFT
Sbjct: 32 LEGLNPQQREAVV-HAGSPLLIVAGAGSGKTAVLTRRIAYLLAERGVTPGQILAITFTNK 90
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EMR+R+ ++VG A + +STFHS +++ R+ A L S F IY RR +
Sbjct: 91 AAAEMRERVAALVGP-RANAMWVSTFHSSCVRILRAQAALLPGLNSNFSIYDSDDSRRLL 149
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
+ LE L KR S +L T H ++ L +
Sbjct: 150 TMISKDLE----LDTKRFSARLLAT--HISNLKNELVGPEEAVV---------------- 187
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
A+ + PAE ++ A + +Y LR+ NALD+ DLI +V LL FP++
Sbjct: 188 -------AADQDPAELPRLI----AKVYGHYQQRLRAANALDFDDLIGETVALLQAFPQI 236
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQIL----------ASHNRITIVGDDDQSIFSFN 518
+ Y+ ++ ++VDE+QDT+ QY L++ L + + +VGD DQSI++F
Sbjct: 237 AEYYRRRFRHVLVDEYQDTNHAQYMLVRELVGGAGESDHAVAPAELCVVGDADQSIYAFR 296
Query: 519 GADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGS 578
GA I + F +D+ + + I L +NYRST+ I+ AA+S+I N R + K + TD+ G
Sbjct: 297 GATIRNIEEFERDYPDARTILLEQNYRSTQNILSAANSVISKNTGRRE-KRLWTDSGEGE 355
Query: 579 KIIIKECHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
I+ NE + +F+ ID++++ + IA+ YR S + + F
Sbjct: 356 LIVGYVADNEHDEASFVASEIDRLVDQGE------TKFADIAVFYRTNNSSRALEEIFIR 409
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY +K VR I+A LR D RR+ ++ + D
Sbjct: 410 LGVPYKVVGGVRFYERKEVRDIVAYLRVLANEDDTVSLRRILNT-------PRRGIGDRA 462
Query: 695 DKISTI----RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSIS 750
+ + R SF +A D K++ RSQ + + LEM+ L P+ +
Sbjct: 463 EACVAVHSEHRNISFAAALRDGAEGKVALLNTRSQ----KAIASFLEMMDGLRALLPTAA 518
Query: 751 A---------VITSVANMVPQK--YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTD 799
A I VA V ++ Y E A D G L+ N+L SV + +D +
Sbjct: 519 ADEDEPFELGDIGEVAEAVLERTGYRAELAASSDPQDGARLDNLNELVSVAREFSSDARN 578
Query: 800 FLST-----KFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENS-VTL 853
+ TAA EG D L AF++ +S Q D+++ VT+
Sbjct: 579 AAGLIDPDDEETAAMREGEPDPGS------LAAFLERVSLVADAD---QLPDSDDGVVTM 629
Query: 854 TTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLF 913
T+H +KGLE+ +VFV + + P + + EERRL YV +TRAR++L+
Sbjct: 630 MTLHTAKGLEFPVVFVTGWEDGQFPHMRALGDPAE-----LSEERRLAYVGITRARQRLY 684
Query: 914 ILYVMMDANW-QLLQ--PSRFLKEIPHHL 939
+ +M + W Q +Q SRF++EIP L
Sbjct: 685 LTRAIMRSAWGQPIQNPASRFIQEIPEDL 713
>gi|328948419|ref|YP_004365756.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489]
gi|328448743|gb|AEB14459.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489]
Length = 675
Score = 263 bits (671), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 223/737 (30%), Positives = 341/737 (46%), Gaps = 128/737 (17%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASE 293
LN +Q +A + P+LI+AG GSGK GI S ILA+TFT AA E
Sbjct: 11 LNPEQYKA-VSTIEGPILIIAGAGSGKTRVITYRIANMLEKGIPQSQILALTFTNKAAKE 69
Query: 294 MRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVR 353
M +RI + GK LT+STFH+F +++ R KL F IY ++ I E+ R
Sbjct: 70 MEERIKELTGKKL-NNLTVSTFHAFGVRILRQEITKLGYRENFSIYDETDKKALIKESGR 128
Query: 354 LLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDV 413
L KF D MD+
Sbjct: 129 EL-------------------------------------------------KFSADAMDL 139
Query: 414 AKASG-----KTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
K S KT + ++ ++ E Y L+ N++D+ DLI +KL PEV
Sbjct: 140 YKISTLFSDIKTGRKSWNSESDMYRSLYEEYQSGLKLFNSVDFDDLIVLPIKLFKENPEV 199
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDSF 528
+ Y++ ++ I+VDEFQDTS QY ++ +LA+ N I +VGDDDQSI+S+ GAD +F
Sbjct: 200 LEAYRNRFRYIMVDEFQDTSHQQYEMMHLLANKN-IAVVGDDDQSIYSWRGADFQNIINF 258
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KDF + EIRL +NYRST I+ AA+ +I+HN R K + + N +G I + NE
Sbjct: 259 EKDFPDVTEIRLEQNYRSTGTILAAANGVIKHNTNRKD-KELWSGNGNGKPIELYSPENE 317
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAF 647
A+ FI + IL + + +Y +L R + + AF E IP+ + G +F
Sbjct: 318 AAEADFIAEGILGISVDEKR---NYDDFGVLIRANTQSRAIEEAFLENNIPYTMSGGTSF 374
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
+ +K ++ II+ LR DD R+ + K I+ I+K+++ S
Sbjct: 375 FERKEIKDIISYLRVIANHDDDINLLRIINT---PRRGIGKAAIESINKVASTMNFSLWE 431
Query: 708 AACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLE 767
+ I + + K E+ S ++ S M+ K L +
Sbjct: 432 SIQAILSS------SEEECPVSEKTKADFEVFSNIIENSKS----------MLSGKGLAK 475
Query: 768 Q-RAVVD----FDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
+ RA+VD FD L++E+ ++ ++ + + + E N + D
Sbjct: 476 KVRALVDEINYFD--YLISENPKSEKSARFKYMNIESLIK---SMEQWENNPNYDDTS-- 528
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
L A+++ I+ + ++ ++ V L TIH SKGLE+ +VF+A A E +P H
Sbjct: 529 --LYAYLNRITLISRDDMDDEQ--DKGKVNLMTIHASKGLEFPVVFIAGAEEGLMPHAH- 583
Query: 883 FNGAVNEKG-TSVEEERRLLYVAMTRARKKLFILYV----MMDANWQLLQPSRFLKEIPH 937
AV E G ++EEERRL YVA+TRAR +L I M + + +PSRFL EIP
Sbjct: 584 ---AVEEGGDAAIEEERRLFYVAVTRARDRLLISSCSHRRKMTSTVE-CEPSRFLDEIPK 639
Query: 938 HL-------REVQAEQS 947
+L +EV AE +
Sbjct: 640 NLVEYHEPSKEVDAETA 656
>gi|282855099|ref|ZP_06264431.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes J139]
gi|282581687|gb|EFB87072.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes J139]
Length = 810
Score = 262 bits (669), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 213/734 (29%), Positives = 345/734 (47%), Gaps = 102/734 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN+ Q EA +P+L+VAG GSGK G+ P +ILA+TFT
Sbjct: 42 LADLNEPQREAVL-HAGSPVLVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTNK 100
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM+ R+ +VG AK + +STFHS ++++ R+ ++L + F IY
Sbjct: 101 AAAEMKARVVDLVGN-RAKPMWVSTFHSAAVRILRTDIDRLGISRNFSIYDDTD------ 153
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
KR++T ++ D + ++ F + + K E
Sbjct: 154 -------------AKRLTT-LVARDQN----------LDPKKFQPRAIMNWISHQKNELI 189
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D A A+ K+ + I + Y LR+ NALD+ DLI +V +L FPEV
Sbjct: 190 APDQAVAAAKSG------NNRINGDVYAEYQRRLRAANALDFDDLIMYTVTVLRQFPEVR 243
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN--------------RITIVGDDDQSIF 515
++Y+ ++ ++VDE+QDT+ QY ++ L + + +VGD DQSI+
Sbjct: 244 EQYRRRFRHVLVDEYQDTNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIY 303
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I F KDF + I L +NYRST+ I+ AA++LI+ N+ R KN+ TD
Sbjct: 304 AFRGATIRNIIDFEKDFPGARTILLEQNYRSTQTILTAANNLIKVNLNRPA-KNLWTDQG 362
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G KI+ E + A++ +I E G SYG +A+ YR + F+ F
Sbjct: 363 DGDKIVGYVADTEHDEAAWVARRIDELVDEGR---TSYGQVAVFYRTNAQSRAFEDVFIR 419
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY +K VR ++ LR DD RR+ + R +
Sbjct: 420 TGLPYRVVGGVRFYERKEVRDAVSYLRAIANPSDDVSLRRILNT---PRRGIGARAEAAV 476
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+ +T R+ SF A I +I G RS + Q R + ++ +V + + +
Sbjct: 477 EMFATARRISFWEALKRI--DEIDGLATRS-VNQIRAFVSLMDDHIAMVEQGKRADEIAS 533
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTA---AKEE 811
S+ L E + + + K ++ L ++++ L++ +F++ E+
Sbjct: 534 SI--------LKESGYITELENSKDPQDETRLENLIE-LVSVAQEFVARVHAVDIDEAEQ 584
Query: 812 GNVDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVA 870
GNV+ + + L AF++ I+ +++ D++ VTL T+H +KGLE+D VF+
Sbjct: 585 GNVEDLESSGDDSLPAFLEQIALVADSDQVPA---DSDGVVTLMTLHTAKGLEFDTVFIT 641
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ--- 927
+ P + A T + EERRL YV +TRARK+LF+ + W Q
Sbjct: 642 GFEDGVFPHMRSLADA-----TELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNP 696
Query: 928 PSRFLKEIPHHLRE 941
PSRF+ EIP L E
Sbjct: 697 PSRFIDEIPERLIE 710
>gi|331085909|ref|ZP_08334992.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330406832|gb|EGG86337.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 741
Score = 262 bits (669), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 220/756 (29%), Positives = 356/756 (47%), Gaps = 116/756 (15%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAA 291
+LN +Q EA PLLI+AG GSGK GI+P NILA+TFT AA
Sbjct: 6 TLNAEQREAVF-HTEGPLLILAGAGSGKTRVLTHRIAYLIEEKGINPWNILAITFTNKAA 64
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEA 351
EMR+R+ IVG + + + +STFHS +++ R H ++L + F IY Q+ + +
Sbjct: 65 GEMRERVDDIVGFGS-ESIWVSTFHSTCVRILRRHIDRLGYDNNFTIYDSDDQKTLMKDV 123
Query: 352 VRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
+LL+ + +R +++ + M+ + ++L Y F +
Sbjct: 124 CKLLQIDTKTYRERTILSAISS------------AKDEMV--TPEEYELNAYGDFSK--- 166
Query: 412 DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQE 471
+KI A + Y L++ NALD+ DL+ +V+L T PE+ +
Sbjct: 167 -------------KKI-----AEAYKEYERQLKANNALDFDDLLVKTVQLFQTQPEILEY 208
Query: 472 YQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRK 530
YQD ++ I+VDE+QDT+ +Q+ L+ +LA+ + + +VGDDDQSI+ F GA+I SF K
Sbjct: 209 YQDRFRYIMVDEYQDTNTVQFKLISLLAAKYKNLCVVGDDDQSIYKFRGANIQNILSFEK 268
Query: 531 DFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDA 590
+F + K I+L +NYRST I++AA+++I++NV R + K++ T+N G KI ++
Sbjct: 269 EFEHTKVIKLEQNYRSTSTILDAANAVIKNNVGR-KAKSLWTENGEGEKIQFRQFDTAYD 327
Query: 591 QCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVAFYR 649
+ +I+ I E NG A+ C + A+LYR ++F+ IP+ I GV FY
Sbjct: 328 EAEYIVGDIRERVDNGKAAYCDH---AVLYRTNAQSRLFEEKMITANIPYKIVGGVNFYA 384
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAA 709
+K ++ ++A L+T G DD RR+ + ++ ++ I + + R SF A
Sbjct: 385 RKEIKDLLAYLKTIDNGKDDLAVRRIIN---VPKRGIGLTTVNRITEAAQQRGISFYEAL 441
Query: 710 CDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQR 769
C A + RS ISKL S +A+I + E
Sbjct: 442 C---SADLVPGLGRS--------------ISKL----ESFAAMIEYFRKEAEHLSITELM 480
Query: 770 AVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFI 829
+ + G + + + L ++ +FL+ AA EE C L
Sbjct: 481 KEILTETGYVEELKAEGEEEAEVRLQNIDEFLNK--IAAYEE--------SCEEELPTLS 530
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
++ E + + V L T+H +KGLE+ V++A + P + +
Sbjct: 531 GFLEEVALVADIDSLDEESDYVVLMTLHSAKGLEFPYVYLAGMEDGIFP---SYMTITAD 587
Query: 890 KGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHHLRE----- 941
T +EEERRL YV +TRA+K+L + M+ Q + SRFLKE+P L
Sbjct: 588 DPTEIEEERRLCYVGITRAKKELAMTCARRRMIRGETQYNKMSRFLKEVPPQLLSTGKIV 647
Query: 942 -------------VQAEQSVQDQHENIPEGTAQFTI 964
VQA+QS Q + I + QF +
Sbjct: 648 EKEELELPKQNAYVQAKQSFQAKPFMISKPVQQFGV 683
>gi|449117884|ref|ZP_21754299.1| hypothetical protein HMPREF9726_02284 [Treponema denticola H-22]
gi|448949775|gb|EMB30599.1| hypothetical protein HMPREF9726_02284 [Treponema denticola H-22]
Length = 662
Score = 262 bits (669), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 227/747 (30%), Positives = 349/747 (46%), Gaps = 120/747 (16%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFT 287
+++ + LN +Q +A ++ P+LI+AG GSGK GI S ILA+TFT
Sbjct: 2 NEFTEGLNPEQFKAVTT-INGPVLIIAGAGSGKTRVITFRIAHMLDKGIPQSQILALTFT 60
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM DRI + GK + LT+STFH+F +++ RSH +K+ S F IY + +
Sbjct: 61 NKAAKEMADRIKELTGKKL-QNLTVSTFHAFGVRVLRSHIDKIGWRSNFSIYDETDRNQL 119
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
I E R L + S D L Y LF S+ K+ + K
Sbjct: 120 IKECGREL---------KFSADALDV-----YKVGILF----------SNIKMGR--KDW 153
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ D KA + + Y L+ NA+D+ DLI +K+ PE
Sbjct: 154 TNEHDSYKA------------------LYKEYQDGLKLYNAVDFDDLIMLPIKIFKEHPE 195
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDS 527
V +EY++ ++ I+VDEFQDTS QY+ ++++A N I +VGDDDQSI+S+ GA +
Sbjct: 196 VLEEYRERYRYIMVDEFQDTSTQQYNFMKLIADKN-ICVVGDDDQSIYSWRGASFENIRN 254
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KDF EI+L +NYRST I+ AA+ +I HNV R ++K + ++ G I I N
Sbjct: 255 FEKDFPEMIEIKLEQNYRSTGTILAAANGVISHNVNR-KVKALWSEKDSGRPIEIFIPEN 313
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVA 646
E A+ FI D IL S Y +L R + + +F E IP+ + G +
Sbjct: 314 EAAEADFISDMIL---SLKQREGFKYSDFGVLIRANSLSRPLEESFLEVNIPYRMSGGTS 370
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFI 706
F+++K ++ +I+ LR DD R+ + K+ ++ + ++T CS
Sbjct: 371 FFQRKEIKDLISYLRVVANPDDDVNLLRIINT---PRRGIGKKTLETLSALATENSCSMR 427
Query: 707 SA--------ACDIFGAKISGTFKRSQLTQG-RKVLLTLEMISKLVRREPSISAVITSVA 757
+A D+ G I + ++L R LL+ + +++ VR+
Sbjct: 428 TAIRLLLENPPEDMRGKSIEDLKEFAELISAHRTQLLSGKGLAQKVRK------------ 475
Query: 758 NMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQD 817
LL+ A ++ L+ E Q+ + ++ FL + +D
Sbjct: 476 -------LLDDIAYNEY----LITEYQKSEKAAQFKMMNIESFLHS----------MDDW 514
Query: 818 KKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
+ N+ + DY++ R T R + + V + TIH SKGLE+ +VF+A A + I
Sbjct: 515 ENNPDNLDGSLYDYLN-RITLLTRDDTEEEKGEVNIMTIHSSKGLEFPVVFIAGAEDGLI 573
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMM---DANWQLLQPSRFLKE 934
P +V E VEEERRL YVA+TRA++KLFI PS FL E
Sbjct: 574 PHAR----SVEENDGDVEEERRLFYVAITRAQQKLFITSCRQRRKQGGIAECAPSPFLDE 629
Query: 935 IPHHLREVQAEQSVQDQHENIPEGTAQ 961
IP L E E Q + E I + +Q
Sbjct: 630 IPADLVEYH-EPDAQAEEERIADIFSQ 655
>gi|395205490|ref|ZP_10396121.1| ATP-dependent DNA helicase PcrA [Propionibacterium humerusii P08]
gi|422441285|ref|ZP_16518095.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL037PA3]
gi|422472533|ref|ZP_16549021.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL037PA2]
gi|422574661|ref|ZP_16650214.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL044PA1]
gi|313835931|gb|EFS73645.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL037PA2]
gi|314927226|gb|EFS91057.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL044PA1]
gi|314970659|gb|EFT14757.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL037PA3]
gi|328906126|gb|EGG25901.1| ATP-dependent DNA helicase PcrA [Propionibacterium humerusii P08]
Length = 810
Score = 261 bits (667), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 215/733 (29%), Positives = 338/733 (46%), Gaps = 104/733 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN+ Q EA +P+L+VAG GSGK G+ P +ILA+TFT
Sbjct: 42 LADLNEPQREAVL-HAGSPVLVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTNK 100
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM+ R+ +VG AK + +STFHS ++++ R+ ++L + F IY +R +
Sbjct: 101 AAAEMKARVVDLVGN-RAKPMWVSTFHSAAVRMLRTDIDRLGISRNFSIYDDTDAKRLV- 158
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
L T H ++ F + K E
Sbjct: 159 --------------------TLVTRDH---------NLDPKKFQQRAIMNWISNQKNELI 189
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D A+A+ T D + Y LR+ NALD+ DLI C+V LL FPEV
Sbjct: 190 SPDEARAAASTG------NDRTNGEVYAEYQRRLRAANALDFDDLIMCTVTLLRQFPEVR 243
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN--------------RITIVGDDDQSIF 515
++Y+ ++ ++VDE+QDT+ QY ++ L + + +VGD DQSI+
Sbjct: 244 EQYRRRFRHVLVDEYQDTNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIY 303
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I F KDF + I L +NYRST+ I+ AA++LI+ N R +KN+ TD
Sbjct: 304 AFRGATIRNILDFEKDFPGARTILLEQNYRSTQTILSAANNLIKMNPSRP-VKNLWTDQG 362
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G KI+ E + A++ +I E G SYG +A+ YR + F+ F
Sbjct: 363 DGDKIVGYVADTEHDEAAWVARRIDELVDEGR---TSYGQVAVFYRTNAQSRAFEDVFIR 419
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY +K VR ++ LR DD RR+ + R +
Sbjct: 420 TGLPYRVVGGVRFYERKEVRDAVSYLRAIANPSDDVSLRRILNT---PRRGIGTRAEAAV 476
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+ +T R+ SF A I +I RS + Q R + ++ +V + + +
Sbjct: 477 EMFATARRISFWEALKRI--DEIDALATRS-VNQIRAFVSLMDDHIAMVEQGKRADEIAS 533
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVT-DFLSTKFTAAKEEG- 812
S+ L E + + + K ++ L ++++ LA V +F++ T EE
Sbjct: 534 SI--------LKESGYIAELENSKDPQDETRLENLIE--LASVAQEFVARVHTVDIEEAE 583
Query: 813 --NVDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFV 869
V+ + + L AF++ I+ +++ D++ VTL T+H +KGLE+D VF+
Sbjct: 584 QDTVEDLELSGDDSLPAFLEQIALVADSDQVPA---DSDGVVTLMTLHTAKGLEFDTVFI 640
Query: 870 AKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLL 926
+ P + A T + EERRL YV +TRARK+LF+ + W Q
Sbjct: 641 TGFEDGVFPHMRSLADA-----TELSEERRLAYVGITRARKQLFLSRASVRTMWGEAQYN 695
Query: 927 QPSRFLKEIPHHL 939
PSRF+ EIP L
Sbjct: 696 PPSRFVDEIPPRL 708
>gi|333383057|ref|ZP_08474719.1| hypothetical protein HMPREF9455_02885 [Dysgonomonas gadei ATCC
BAA-286]
gi|332827889|gb|EGK00611.1| hypothetical protein HMPREF9455_02885 [Dysgonomonas gadei ATCC
BAA-286]
Length = 785
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 211/718 (29%), Positives = 352/718 (49%), Gaps = 103/718 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
L LN QQ EA +S P LI+AG GSGK G P +ILA+TFT A
Sbjct: 5 LDHLNKQQREA-VEYISGPSLIIAGAGSGKTRVLTYKIAYLLQQGYMPHSILALTFTNKA 63
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIE 350
A EM++RI I+G A+ L + TFHS ++ R+ AEK+ TS F I+ R I
Sbjct: 64 AREMKERIAEIIGWKYARYLWMGTFHSVFSRILRTEAEKIGFTSNFTIFDSADSRNMIKT 123
Query: 351 AVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++ + ++K+ R+ + ++ + ++ N +L +Y+ +R
Sbjct: 124 IIKQYQLDDKVYKPARVQATI--SNAKNALISPQMYAQNK---------ELLEYD--QRS 170
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
M V K I +YN L++ N +D+ DL+ + L P+V
Sbjct: 171 KMPVLK------------------DIYRDYNNRLKASNTMDFDDLLFYTNVLFRDHPDVL 212
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ+ ++ I+VDE+QDT+ QY +++ LA +H+R+ +VGDD QSI+SF GA+I F
Sbjct: 213 KSYQERYQFILVDEYQDTNFAQYLVVKQLADAHHRVCVVGDDAQSIYSFRGANIDNILKF 272
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
++ + K +L +NYRST+ IV AA+SLIQ N ++ + K + ++N G +I I ++
Sbjct: 273 KEVYSESKLFKLEQNYRSTQNIVNAANSLIQQNREQIK-KTIYSENDEGERIEISSAFSD 331
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAF 647
+ + +KI + + A +Y ILYR ++F+ A R++ IP+ I+ G++F
Sbjct: 332 FEEGVIVSNKIWDIRRDKKA---AYSDFVILYRTNAQSRIFEEALRKKNIPYRIYGGLSF 388
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y++K ++ +IA R + D+ +RR+ + ++ I + + S
Sbjct: 389 YQRKEIKDVIAYFRMVVNPFDEEAFRRIIN---FPARGIGNTTLNKIADAARLHNVSLWE 445
Query: 708 AACDIFGAKI---SGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKY 764
D G + +GT K+ L++ R E+I + + +SA +A+ + ++
Sbjct: 446 VIGDSLGYNLNVNTGTAKK--LSEFR------ELIESFIAQLRELSAY--ELASRIVKQS 495
Query: 765 LLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINV 824
+ A D + ++N LQ LL + +F ++ KEEG G I +
Sbjct: 496 GIATEAYQDQTPEGMSRQEN-----LQELLGGIHEFCESR----KEEG------LGGIGL 540
Query: 825 LKAFIDYISERETEHFR-TQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP---LV 880
+ D++SE + T + ++ VT+ T+H SKGLE+ VFV E P
Sbjct: 541 M----DFLSEVSLLSDQDTDKEADQEKVTMMTVHASKGLEFKNVFVVGMEEDLFPSSMAK 596
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
+EF G +EEERRL YVA+TRA++ I Y + PSRFL++I
Sbjct: 597 NEFRG--------LEEERRLFYVAITRAKEYCMITYAKSRFRNGQINASNPSRFLRDI 646
>gi|374597133|ref|ZP_09670137.1| UvrD/REP helicase [Gillisia limnaea DSM 15749]
gi|373871772|gb|EHQ03770.1| UvrD/REP helicase [Gillisia limnaea DSM 15749]
Length = 773
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 222/729 (30%), Positives = 351/729 (48%), Gaps = 125/729 (17%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
YL LND Q A ++++AG GSGK G+ P NIL++TFT
Sbjct: 4 YLAELNDAQ-RAPVLQKDGAMIVIAGAGSGKTRVLTYRIAYLMSKGVDPFNILSLTFTNK 62
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ RI IVG + AK L + TFHS ++ R A+KL S F IY +R I
Sbjct: 63 AAKEMKKRISQIVGSSEAKNLWMGTFHSIFAKMLRFEADKLGYPSNFTIYDTQDSQRLIS 122
Query: 350 EAVRLLENEKIL-----VVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYN 404
++ + +K + V RIS+ + SL + A
Sbjct: 123 AIIKEMGLDKDIYKYKQVYSRISS-----------YKNSLITVKAY-------------- 157
Query: 405 KFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLST 464
F+ + A A K P ++GD I +NY A+D+ DL+ + +LL+
Sbjct: 158 -FQNPELKEADAMSKKP----RLGD-----IYKNYVDRCFKAGAMDFDDLLLKTNELLNR 207
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADIS 523
FPEV Q+YQ+ ++ I+VDE+QDT+ QY +++ L+ I +VGDD QSI++F GA+I+
Sbjct: 208 FPEVLQKYQNRFRYILVDEYQDTNHSQYLIVKALSDKFQNICVVGDDAQSIYAFRGANIN 267
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
+F+KD+ N + RL +NYRST+ IV AA+S+I+ N + + K V T N G KII+
Sbjct: 268 NILNFQKDYDNVQLYRLEQNYRSTKNIVNAANSIIEKNKTKLE-KVVWTANEDGPKIIVN 326
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH 643
+ + F+ I E N + GS AILYR + + A R+R+IP+ I+
Sbjct: 327 RLLTDGEEGRFVASSIFE---NKMQNQLDNGSFAILYRTNAQSRAMEDALRKREIPYRIY 383
Query: 644 -GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH--IDKIS-- 698
G++FY++K ++ +++ LR + D+ +RV R I IDK++
Sbjct: 384 GGLSFYQRKEIKDVLSYLRLLINPNDEAALKRVINY--------PARGIGQTTIDKLTIA 435
Query: 699 --TIRKCSF-ISAACDIFGAKI-SGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
T K F + D K+ SGT R++LT ++ + ++++ +A
Sbjct: 436 ANTYGKSIFEVIENLDHIDLKVNSGT--RNKLTNFVNMIKSFSILNE--------NADAF 485
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
+VA+ V +K L Q D + +N ++ LL + DF+ + A G+
Sbjct: 486 TVADTVAKKTGLVQDLKKDGTPEGVAKIEN-----IEELLNGIRDFVEGQKELADATGS- 539
Query: 815 DQDKKGCINVLKAFIDYIS-----ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFV 869
L F++ ++ ++ET ++ V L TIH +KGLE+ V++
Sbjct: 540 ----------LAEFLEDVALATDMDKET---------GDDHVALMTIHLAKGLEFPYVYI 580
Query: 870 AKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL--- 926
E P +G + +EEERRL YVA+TRA K+ ++ Y W L
Sbjct: 581 VGMEEDLFP-----SGMSMNTRSELEEERRLFYVALTRAEKQAYLTYTQSRYRWGKLVDA 635
Query: 927 QPSRFLKEI 935
+PSRF+ EI
Sbjct: 636 EPSRFIDEI 644
>gi|449109958|ref|ZP_21746590.1| hypothetical protein HMPREF9722_02286 [Treponema denticola ATCC
33520]
gi|448957666|gb|EMB38406.1| hypothetical protein HMPREF9722_02286 [Treponema denticola ATCC
33520]
Length = 662
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 226/747 (30%), Positives = 347/747 (46%), Gaps = 120/747 (16%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFT 287
+++ + LN +Q +A ++ P+LI+AG GSGK GI S ILA+TFT
Sbjct: 2 NEFTEGLNPEQFKAVT-TINGPVLIIAGAGSGKTRVITFRIAHMLDKGIPQSQILALTFT 60
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM DRI + GK + LT+STFH+F +++ RSH +K+ S F IY + +
Sbjct: 61 NKAAKEMADRIKELTGKKL-QNLTVSTFHAFGVKVLRSHIDKIGWRSNFSIYDETDRNQL 119
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
I E R L + S D L Y LF S+ K+ +
Sbjct: 120 IKECGREL---------KFSADALDV-----YKVGILF----------SNIKMGR----- 150
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
K +R A+ + Y L+ NA+D+ DLI +K+ PE
Sbjct: 151 -------KDWTNEHDSYR--------ALYKEYQEGLKLYNAVDFDDLIMLPIKIFKEHPE 195
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDS 527
V EY++ ++ I+VDEFQDTS QY+ ++++A N I +VGDDDQSI+S+ GA +
Sbjct: 196 VLAEYRERYRYIMVDEFQDTSTQQYNFMKLIADKN-ICVVGDDDQSIYSWRGASFENIRN 254
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KDF EI+L +NYRST I+ AA+ +I HNV R ++K + ++ G I I N
Sbjct: 255 FEKDFPEMIEIKLEQNYRSTGTILAAANGVISHNVNR-KVKALWSEKDSGRPIEIFIPEN 313
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVA 646
E A+ FI D IL S Y +L R + + +F E IP+ + G +
Sbjct: 314 EAAEADFISDMIL---SLKQREGFKYSDFGVLIRANSLSRPLEESFLEVNIPYRMSGGTS 370
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFI 706
F+++K ++ +I+ LR DD R+ + K+ ++ + ++T CS
Sbjct: 371 FFQRKEIKDLISYLRVVANPDDDVNLLRIINT---PRRGIGKKTLETLSALATENSCSMR 427
Query: 707 SA--------ACDIFGAKISGTFKRSQLTQG-RKVLLTLEMISKLVRREPSISAVITSVA 757
+A D+ G I + ++L R LL+ + +++ VR+
Sbjct: 428 TAIRLLLENPPEDMRGKSIEDLKEFAELISAHRTQLLSGKGLAQKVRK------------ 475
Query: 758 NMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQD 817
LL+ A ++ L+ E Q+ + ++ FL + +D
Sbjct: 476 -------LLDDIAYNEY----LIAEYQKSEKAAQFKMMNIESFLHS----------MDDW 514
Query: 818 KKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
+ N+ + DY++ R T R + + V + TIH SKGLE+ +VF+A A + I
Sbjct: 515 ENNPDNLDGSLYDYLN-RITLLTRDDTEEEKGEVNIMTIHSSKGLEFPVVFIAGAEDGLI 573
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMM---DANWQLLQPSRFLKE 934
P +V E VEEERRL YVA+TRA++KLFI PS FL E
Sbjct: 574 PHAR----SVEENDGDVEEERRLFYVAITRAQQKLFITSCRQRRKQGGITECAPSPFLDE 629
Query: 935 IPHHLREVQAEQSVQDQHENIPEGTAQ 961
IP L E E Q + E I + +Q
Sbjct: 630 IPADLVEYH-EPDAQAEEERIADIFSQ 655
>gi|429730285|ref|ZP_19264933.1| ATP-dependent DNA helicase PcrA [Corynebacterium durum F0235]
gi|429147876|gb|EKX90894.1| ATP-dependent DNA helicase PcrA [Corynebacterium durum F0235]
Length = 783
Score = 260 bits (665), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 221/748 (29%), Positives = 351/748 (46%), Gaps = 117/748 (15%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAA 291
LN QQ EA PLLIVAG GSGK G+ P ILA+TFT AA
Sbjct: 10 GLNPQQKEA-VEHTGVPLLIVAGAGSGKTAVLTRRIAYLLQHRGVHPGQILAITFTNKAA 68
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAIIE 350
+EMR+R+ +VG A+ + +STFHS +++ R HA + + F IY RR + +
Sbjct: 69 AEMRERVMDVVGP-VAERMWVSTFHSTCVRILRQHASMIPGLNTNFSIYDSDDSRRLLAQ 127
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
+ ++ L +K+ + L T ++S+ K N+
Sbjct: 128 IAKDMQ----LDLKKFTARSLAT--------------------AISNLK----NELVSP- 158
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
D A + KT EF + + A + +Y LR NA+D+ DLI V + PEV +
Sbjct: 159 QDAATEAEKTRNEF----EVVVAKVYADYQAQLRRANAVDFDDLIGEVVGIFQRHPEVAE 214
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQIL----------ASHNRITIVGDDDQSIFSFNGA 520
Y+ ++ +++DE+QDT+ QY L+ L A + + +VGD DQSI++F GA
Sbjct: 215 HYRRRFRHVLIDEYQDTNHAQYMLVSTLVDKPTDDPYAAPPSELCVVGDADQSIYAFRGA 274
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
I + F +D+ + I L +NYRST+ I+ AA+++I N R K + T G K+
Sbjct: 275 TIRNIEEFERDYPQARTILLEQNYRSTQNILSAANAVIAQNEGRRD-KRLWTALGDGEKL 333
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
+ NE + FI +I A +G S+ IA++YR S + + F IP+
Sbjct: 334 VGYVADNEQDEARFIAQEIDNLADDG----ASFSDIAVMYRTNNSSRALEDVFIRTGIPY 389
Query: 641 N-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVF-----------KAFLLLEKEEKK 688
+ G FY +K +R I+A LR D RR+ +AF+ L
Sbjct: 390 KVVGGTRFYERKEIRDIVAYLRVLDNPDDSVSLRRIINTPRRGIGDRAQAFIAL------ 443
Query: 689 RVIDHIDKISTIRKCSFISAACDIFGAKIS--GTFKRSQLTQGRKVLLTLEMISKLVRRE 746
H D SF SA D K+S GT ++ + + ++ L IS+ E
Sbjct: 444 ----HAD----TNGMSFGSALIDAANGKVSMLGTRAKNAVAKFVDMMDGLRFISQTSINE 495
Query: 747 ----PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLS 802
P + A+++S+ ++ Y E D G L+ N+L SV + +DV L+
Sbjct: 496 DTNLPDLGAIVSSILDVT--GYRSELEVSNDPQDGTRLDNLNELVSVAREFTSDVATMLA 553
Query: 803 TKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIHQSKG 861
+ +++ + + + G L+AF++ +S Q DN+ VTL T+H +KG
Sbjct: 554 --YADDEQQQDTGEPEPGS---LQAFLERVSLVADAD---QLPDNDQGVVTLMTLHTAKG 605
Query: 862 LEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDA 921
LE+ IVF+ + + P + + EERRL YV +TRA+++L++ +M A
Sbjct: 606 LEFPIVFLTGWEDGQFPHLRALGNP-----RELAEERRLAYVGITRAQRRLYVSRALMRA 660
Query: 922 NWQ---LLQPSRFLKEIPHHLREVQAEQ 946
+W PSRFL+EIP L + + E+
Sbjct: 661 SWGNPVTNPPSRFLQEIPGDLVDWRREE 688
>gi|449103153|ref|ZP_21739899.1| hypothetical protein HMPREF9730_00796 [Treponema denticola AL-2]
gi|448965005|gb|EMB45670.1| hypothetical protein HMPREF9730_00796 [Treponema denticola AL-2]
Length = 662
Score = 260 bits (665), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 226/747 (30%), Positives = 346/747 (46%), Gaps = 120/747 (16%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFT 287
+++ + LN +Q +A ++ P+LI+AG GSGK GI S ILA+TFT
Sbjct: 2 NEFTEGLNPEQFKAVTT-INGPVLIIAGAGSGKTRVITFRIAHMLDKGIPQSQILALTFT 60
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM DRI + GK + LT+STFH+F +++ RSH +K+ S F IY + +
Sbjct: 61 NKAAKEMADRIKELTGKKL-QNLTVSTFHAFGVKVLRSHIDKIGWRSNFSIYDETDRNQL 119
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
I E R L + S D L Y LF S+ K+ +
Sbjct: 120 IKECGREL---------KFSADALDV-----YKVGILF----------SNIKMGR----- 150
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
K +R A+ + Y L+ NA+D+ DLI +K+ PE
Sbjct: 151 -------KDWTNEHDSYR--------ALYKEYQEGLKLYNAVDFDDLIMLPIKIFKEHPE 195
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDS 527
V EY++ ++ I+VDEFQDTS QY+ ++++A N I +VGDDDQSI+S+ GA +
Sbjct: 196 VLAEYRERYRYIMVDEFQDTSTQQYNFMKLIADKN-ICVVGDDDQSIYSWRGASFENIRN 254
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KDF EI+L +NYRST I+ AA+ +I HNV R ++K + ++ G I I N
Sbjct: 255 FEKDFPEMIEIKLEQNYRSTGTILAAANGVISHNVNR-KVKALWSEKDSGRPIEIFIPEN 313
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVA 646
E A+ FI D IL S Y +L R + + +F E IP+ + G +
Sbjct: 314 EAAEADFISDMIL---SLKQREGFKYSDFGVLIRANSLSRPLEESFLEVNIPYRMSGGTS 370
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFI 706
F+++K ++ +I+ LR DD R+ + K+ ++ + ++T CS
Sbjct: 371 FFQRKEIKDLISYLRVVANPDDDVNLLRIINT---PRRGIGKKTLETLSALATENSCSMR 427
Query: 707 SA--------ACDIFGAKISGTFKRSQLTQG-RKVLLTLEMISKLVRREPSISAVITSVA 757
+A D+ G I + ++L R LL+ + +++ VR+
Sbjct: 428 TAIRLLLENPPEDMRGKSIEDLKEFAELISAHRTQLLSGKGLAQKVRK------------ 475
Query: 758 NMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQD 817
LL+ A ++ L+ E Q+ + ++ FL + +D
Sbjct: 476 -------LLDDIAYNEY----LITEYQKSEKAAQFKMMNIESFLHS----------MDDW 514
Query: 818 KKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
+ N + DY++ R T R + + V + TIH SKGLE+ +VF+A A + I
Sbjct: 515 ENNPDNWDASLYDYLN-RITLLTRDDTEEEKGEVNIMTIHSSKGLEFPVVFIAGAEDGLI 573
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMM---DANWQLLQPSRFLKE 934
P +V E VEEERRL YVA+TRA++KLFI PS FL E
Sbjct: 574 PHAR----SVEENDGDVEEERRLFYVAITRAQQKLFITSCRQRRKQGGITECAPSPFLDE 629
Query: 935 IPHHLREVQAEQSVQDQHENIPEGTAQ 961
IP L E E Q + E I + +Q
Sbjct: 630 IPADLVEYH-EPDAQAEEERIADIFSQ 655
>gi|449130689|ref|ZP_21766908.1| hypothetical protein HMPREF9724_01573 [Treponema denticola SP37]
gi|448941729|gb|EMB22629.1| hypothetical protein HMPREF9724_01573 [Treponema denticola SP37]
Length = 662
Score = 260 bits (665), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 223/738 (30%), Positives = 345/738 (46%), Gaps = 126/738 (17%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFT 287
+++ + LN +Q +A ++ P+LI+AG GSGK GI S ILA+TFT
Sbjct: 2 NEFTEGLNPEQFKAVTT-INGPVLIIAGAGSGKTRVITFRIAHMLDKGIPQSQILALTFT 60
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM DRI + GK + LT+STFH+F +++ RSH +K+ S F IY + +
Sbjct: 61 NKAAKEMADRIKELTGKKL-QNLTVSTFHAFGVKVLRSHIDKIGWRSNFSIYDETDRNQL 119
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYN-KF 406
I E R L + S D L Y LF S+ K+ + +
Sbjct: 120 IKECGREL---------KFSADALDV-----YKVGILF----------SNIKMGRKDWTN 155
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
E D V + + Y L+ NA+D+ DLI +K+ P
Sbjct: 156 EHDSYKV---------------------LYKEYQDGLKLYNAVDFDDLIMLPIKIFKEHP 194
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFD 526
EV +EY++ ++ I+VDEFQDTS QY+ ++++A N I +VGDDDQSI+S+ GA
Sbjct: 195 EVLEEYRERYRYIMVDEFQDTSTQQYNFMKLIADKN-ICVVGDDDQSIYSWRGASFENIR 253
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
+F KDF EI+L +NYRST I+ AA+ +I HNV R ++K + ++ G I I
Sbjct: 254 NFEKDFPEMIEIKLEQNYRSTGTILAAANGVISHNVNR-KVKALWSEKDSGRPIEIFIPE 312
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GV 645
NE A+ FI D IL S Y +L R + + +F E IP+ + G
Sbjct: 313 NEAAEADFISDMIL---SLKQREGFKYSDFGVLIRANSLSRPLEESFLEVNIPYRMSGGT 369
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSF 705
+F+++K ++ +I+ LR DD R+ + K+ ++ + ++T CS
Sbjct: 370 SFFQRKEIKDLISYLRVVANPDDDVNLLRIINT---PRRGIGKKTLETLSALATENSCSM 426
Query: 706 ISA--------ACDIFGAKISGTFKRSQL-TQGRKVLLTLEMISKLVRREPSISAVITSV 756
+A D+ G I + ++L + R LL+ + +++ VR+
Sbjct: 427 RAAIRLLLENPPEDMRGKSIEDLKEFAELISTHRTQLLSGKGLAQKVRK----------- 475
Query: 757 ANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQ 816
LL+ A ++ L+ E Q+ + ++ FL + +D
Sbjct: 476 --------LLDDIAYNEY----LITEYQKSEKAAQFKMMNIESFLHS----------MDD 513
Query: 817 DKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
+ N + DY++ R T R + + V + TIH SKGLE+ +VF+A A +
Sbjct: 514 WENNPDNWDGSLYDYLN-RITLLTRDDTEEEKGEVNIMTIHSSKGLEFPVVFIAGAEDGL 572
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMM---DANWQLLQPSRFLK 933
IP +V E VEEERRL YVA+TRA++KLFI PS FL
Sbjct: 573 IPHAR----SVEENDGDVEEERRLFYVAITRAQQKLFITSCRQRRKQGGITECAPSPFLD 628
Query: 934 EIP-----HHLREVQAEQ 946
EIP +H + QAE+
Sbjct: 629 EIPADLVQYHEPDAQAEE 646
>gi|449126385|ref|ZP_21762674.1| hypothetical protein HMPREF9733_00077 [Treponema denticola SP33]
gi|448947379|gb|EMB28224.1| hypothetical protein HMPREF9733_00077 [Treponema denticola SP33]
Length = 662
Score = 260 bits (664), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 224/737 (30%), Positives = 345/737 (46%), Gaps = 124/737 (16%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFT 287
+++ + LN +Q +A ++ P+LI+AG GSGK GI S ILA+TFT
Sbjct: 2 NEFTEGLNPEQFKAVTT-INGPVLIIAGAGSGKTRVITFRIAHMLDKGIPQSQILALTFT 60
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM DRI + GK + LT+STFH+F +++ RSH +K+ S F IY + +
Sbjct: 61 NKAAKEMADRIKELTGKKL-QNLTVSTFHAFGVKVLRSHIDKIGWRSNFSIYDETDRNQL 119
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
I E R L + S D L Y LF S+ K+ + K
Sbjct: 120 IKECGREL---------KFSADALDV-----YKVGILF----------SNIKMGR--KDW 153
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ D KA + + Y L+ NA+D+ DLI +K+ PE
Sbjct: 154 TNEHDSYKA------------------LYKEYQDGLKLYNAVDFDDLIMLPIKIFKEHPE 195
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDS 527
V EY++ ++ I+VDEFQDTS QY+ ++++A N I +VGDDDQSI+S+ GA +
Sbjct: 196 VLAEYRERYRYIMVDEFQDTSTQQYNFMKLIADKN-ICVVGDDDQSIYSWRGASFENIRN 254
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KDF EI+L +NYRST I+ AA+ +I HNV R ++K + ++ G I I N
Sbjct: 255 FEKDFPEMIEIKLEQNYRSTGTILAAANGVISHNVNR-KVKALWSEKDSGRPIEIFIPEN 313
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVA 646
E A+ FI D IL S Y +L R + + +F E IP+ + G +
Sbjct: 314 EAAEADFISDMIL---SLKQREGFKYSDFGVLIRANSLSRPLEESFLEVNIPYRMSGGTS 370
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFI 706
F+++K ++ +I+ LR DD R+ + K+ ++ + ++T CS
Sbjct: 371 FFQRKEIKDLISYLRVVANPDDDVNLLRIINT---PRRGIGKKTLETLSALATENSCSMR 427
Query: 707 SA--------ACDIFGAKISGTFKRSQLTQG-RKVLLTLEMISKLVRREPSISAVITSVA 757
+A D+ G I + ++L R LL+ + +++ VR+
Sbjct: 428 TAIRLLLESPPEDMRGKSIEDLKEFAELISAHRTQLLSGKGLAQKVRK------------ 475
Query: 758 NMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQD 817
LL+ A ++ L+ E Q+ + ++ FL + +D
Sbjct: 476 -------LLDDIAYNEY----LIAEYQKSEKAAQFKMMNIESFLHS----------MDDW 514
Query: 818 KKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
+ N+ + DY++ R T R + + V + TIH SKGLE+ +VF+A A + I
Sbjct: 515 ENNPDNLDGSLYDYLN-RITLLTRDDTEEEKGEVNIMTIHSSKGLEFPVVFIAGAEDGLI 573
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMM---DANWQLLQPSRFLKE 934
P +V E VEEERRL YVA+TRA++KLFI PS FL E
Sbjct: 574 PHAR----SVEENDGDVEEERRLFYVAITRAQQKLFITSCRQRRKQGGITECAPSPFLDE 629
Query: 935 IP-----HHLREVQAEQ 946
IP +H + QAE+
Sbjct: 630 IPADLVQYHEPDAQAEE 646
>gi|418245941|ref|ZP_12872341.1| hypothetical protein KIQ_10601 [Corynebacterium glutamicum ATCC
14067]
gi|354510017|gb|EHE82946.1| hypothetical protein KIQ_10601 [Corynebacterium glutamicum ATCC
14067]
Length = 767
Score = 260 bits (664), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 228/764 (29%), Positives = 346/764 (45%), Gaps = 137/764 (17%)
Query: 234 TQNMPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISP 278
T PD + LN+QQ AA + +PLLIVAG GSGK G+ P
Sbjct: 7 TPGSPD----LIDGLNEQQ-RAAVEHIGSPLLIVAGAGSGKTAVLTRRIAYLMRYRGVHP 61
Query: 279 SNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFL 337
ILA+TFT AA+EMR+R+ +VG A+ + ++TFHS +++ R A+ +E + F
Sbjct: 62 QQILAITFTNKAAAEMRERVSQLVGP-VAERMWVATFHSVCVRILRQQAQLVEGLNTNFT 120
Query: 338 IYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSS 397
IY RR + + LE L +K+ S L G ++ L L + +
Sbjct: 121 IYDSDDSRRLLTMIAKDLE----LDIKKFSARTLL--GAISNLKNELVTPQEALADAERT 174
Query: 398 FKLCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISC 457
+N +E VA+A Y LR NA+D+ DLI
Sbjct: 175 -----HNPYE---TVVARA-------------------FSEYQSRLRRANAVDFDDLIGE 207
Query: 458 SVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-----NRITIVGDDDQ 512
+V++ P V + Y+ ++ +++DE+QDT+ QY L+ L + + +VGD DQ
Sbjct: 208 TVRIFREHPPVAEYYRRRFRHVLIDEYQDTNHAQYELISTLVGKPDQDPSELCVVGDSDQ 267
Query: 513 SIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQT 572
SI++F GA I + F +DF N + I L +NYRST+ I+ AA+S+I N R + KN+ T
Sbjct: 268 SIYAFRGATIRNIEEFERDFSNARTILLEQNYRSTQTILSAANSVISQNENR-RPKNLWT 326
Query: 573 DNSHGSKIIIKECHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVF 629
G +II NE + FI ID +++H N Y IAI+YR S +
Sbjct: 327 ALGEGEQIIGYVADNEHDEARFIASEIDNLVDHGMN-------YSDIAIMYRTNNSSRAL 379
Query: 630 QTAFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVF-----------K 677
+ F +P+ + G FY +K +R IIA LR D RR+ +
Sbjct: 380 EDVFMRTGVPYKVVGGTKFYERKEIRDIIAYLRVLENPDDTVNLRRIINTPKRGIGDRAQ 439
Query: 678 AFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLE 737
AF+ L E + SF A D KI R G+ ++
Sbjct: 440 AFIALHSENN--------------QISFGQALLDAGLGKIDLLGAR-----GKNAVIKFN 480
Query: 738 MISKLVRRE-----------PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDL 786
+ +R E P I VI+ + ++ K LE A D G L+ N+L
Sbjct: 481 ELFDALRTELPTMVNEVTGLPDIGQVISRILDITGYKAELE--ASNDPQDGARLDNLNEL 538
Query: 787 RSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHD 846
SV + +D AA N + + L+AF++ +S Q D
Sbjct: 539 VSVAREFSSD----------AANRMVNEVPEGEAQPGSLQAFLERVSLVADAD---QIPD 585
Query: 847 NENS-VTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAM 905
++N VTL T+H +KGLE+ IVF+ + + P + A + EERRL YV +
Sbjct: 586 SDNGVVTLMTLHTAKGLEFPIVFLTGWEDGQFPHLRSLGDA-----KELAEERRLAYVGI 640
Query: 906 TRARKKLFILYVMMDANWQ---LLQPSRFLKEIPHHLREVQAEQ 946
TRARK L++ M+ ++W PSRFL+E+P L + + E+
Sbjct: 641 TRARKGLYMTRAMLRSSWGNPVTNPPSRFLQEVPAELIDWRREE 684
>gi|145295025|ref|YP_001137846.1| hypothetical protein cgR_0969 [Corynebacterium glutamicum R]
gi|417972108|ref|ZP_12613023.1| hypothetical protein CgS9114_13825 [Corynebacterium glutamicum
S9114]
gi|140844945|dbj|BAF53944.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344043597|gb|EGV39286.1| hypothetical protein CgS9114_13825 [Corynebacterium glutamicum
S9114]
Length = 763
Score = 260 bits (664), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 227/764 (29%), Positives = 347/764 (45%), Gaps = 137/764 (17%)
Query: 234 TQNMPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISP 278
T PD + LN+QQ AA + +PLLIVAG GSGK G+ P
Sbjct: 7 TPGSPD----LIDGLNEQQ-RAAVEHIGSPLLIVAGAGSGKTAVLTRRIAYLMRYRGVHP 61
Query: 279 SNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFL 337
ILA+TFT AA+EMR+R+ +VG A+ + ++TFHS +++ R A+ +E + F
Sbjct: 62 QQILAITFTNKAAAEMRERVSQLVGP-VAERMWVATFHSVCVRILRQQAQLVEGLNTNFT 120
Query: 338 IYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSS 397
IY RR + + LE L +K+ S L G ++ L L + +
Sbjct: 121 IYDSDDSRRLLTMIAKDLE----LDIKKFSARTLL--GAISNLKNELVTPQEALADAERT 174
Query: 398 FKLCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISC 457
+N +E VA+A Y LR NA+D+ DLI
Sbjct: 175 -----HNPYE---TVVARA-------------------FSEYQSRLRRANAVDFDDLIGE 207
Query: 458 SVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-----NRITIVGDDDQ 512
+V++ P V + Y+ ++ +++DE+QDT+ QY L+ L + + +VGD DQ
Sbjct: 208 TVRIFREHPPVAEYYRRRFRHVLIDEYQDTNHAQYELISTLVGKPDQDPSELCVVGDSDQ 267
Query: 513 SIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQT 572
SI++F GA I + F +DF N + I L +NYRST+ I+ AA+++I N R + KN+ T
Sbjct: 268 SIYAFRGATIRNIEEFERDFSNARTILLEQNYRSTQTILSAANAVISQNENR-RPKNLWT 326
Query: 573 DNSHGSKIIIKECHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVF 629
G +II NE + FI ID +++H N Y IAI+YR S +
Sbjct: 327 ALGEGEQIIGYVADNEHDEARFIASEIDNLVDHGMN-------YSDIAIMYRTNNSSRAL 379
Query: 630 QTAFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVF-----------K 677
+ F +P+ + G FY +K +R IIA LR D RR+ +
Sbjct: 380 EDVFMRTGVPYKVVGGTKFYERKEIRDIIAYLRVLENPDDTVNLRRIINTPKRGIGDRAQ 439
Query: 678 AFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLE 737
AF+ L E + SF A D KI R G+ ++
Sbjct: 440 AFIALHSENN--------------QISFGQALLDAGLGKIDLLGAR-----GKNAVIKFN 480
Query: 738 MISKLVRRE-----------PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDL 786
+ +R E P I VI+ + ++ K LE A D G L+ N+L
Sbjct: 481 ELFDALRTELPTMVNEVTGLPDIGQVISRILDITGYKAELE--ASNDPQDGARLDNLNEL 538
Query: 787 RSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHD 846
SV + +D AA N + + L+AF++ +S Q D
Sbjct: 539 VSVAREFSSD----------AANRMVNEVPEGEAQPGSLQAFLERVSLVADAD---QIPD 585
Query: 847 NENS-VTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAM 905
++N VTL T+H +KGLE+ IVF+ + + P + A + EERRL YV +
Sbjct: 586 SDNGVVTLMTLHTAKGLEFPIVFLTGWEDGQFPHLRSLGDA-----KELAEERRLAYVGI 640
Query: 906 TRARKKLFILYVMMDANWQ---LLQPSRFLKEIPHHLREVQAEQ 946
TRARK+L++ M+ ++W PSRFL+E+P L + + E+
Sbjct: 641 TRARKRLYMTRAMLRSSWGNPVTNPPSRFLQEVPAELIDWRREE 684
>gi|449106819|ref|ZP_21743481.1| hypothetical protein HMPREF9729_01746 [Treponema denticola ASLM]
gi|451968519|ref|ZP_21921748.1| hypothetical protein HMPREF9728_00925 [Treponema denticola US-Trep]
gi|448964169|gb|EMB44842.1| hypothetical protein HMPREF9729_01746 [Treponema denticola ASLM]
gi|451702532|gb|EMD56934.1| hypothetical protein HMPREF9728_00925 [Treponema denticola US-Trep]
Length = 662
Score = 259 bits (663), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 227/747 (30%), Positives = 347/747 (46%), Gaps = 120/747 (16%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFT 287
+++ + LN +Q +A ++ P+LI+AG GSGK GI S ILA+TFT
Sbjct: 2 NEFTEGLNPEQFKAVT-TINGPVLIIAGAGSGKTRVITFRIAHMLDKGIPQSQILALTFT 60
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM DRI + GK + LT+STFH+F +++ RSH +K+ S F IY + +
Sbjct: 61 NKAAKEMADRIKELTGKKL-QNLTVSTFHAFGVKVLRSHIDKIGWRSNFSIYDETDRNQL 119
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
I E R L + S D L Y LF S+ K+ + K
Sbjct: 120 IKECGREL---------KFSADALDV-----YKVGILF----------SNIKMGR--KDW 153
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ D KA + + Y L+ NA+D+ DLI +K+ PE
Sbjct: 154 TNEHDSYKA------------------LYKEYQEGLKLYNAVDFDDLIMLPIKIFKEHPE 195
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDS 527
V EY++ ++ I+VDEFQDTS QY+ ++++A N I +VGDDDQSI+S+ GA +
Sbjct: 196 VLAEYRERYRYIMVDEFQDTSTQQYNFMKLIADKN-ICVVGDDDQSIYSWRGASFENIRN 254
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KDF EI+L +NYRST I+ AA+ +I HNV R ++K + ++ G I I N
Sbjct: 255 FEKDFPEMIEIKLEQNYRSTGTILAAANGVISHNVNR-KVKALWSEKDSGRPIEIFIPEN 313
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVA 646
E A+ FI D IL S Y +L R + + +F E IP+ + G +
Sbjct: 314 EAAEADFISDMIL---SLKQREGFKYSDFGVLIRANSLSRPLEESFLEVNIPYRMSGGTS 370
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFI 706
F+++K ++ +I+ LR DD R+ + K+ ++ + ++T CS
Sbjct: 371 FFQRKEIKDLISYLRVVANPDDDVNLLRIINT---PRRGIGKKTLETLSALATENSCSMR 427
Query: 707 SA--------ACDIFGAKISGTFKRSQLTQG-RKVLLTLEMISKLVRREPSISAVITSVA 757
+A D+ G I + ++L R LL+ + +++ VR+
Sbjct: 428 TAIRLLLENPPEDMRGKSIEDLKEFAELISAHRTQLLSGKGLAQKVRK------------ 475
Query: 758 NMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQD 817
LL+ A ++ L+ E Q+ + ++ FL + +D
Sbjct: 476 -------LLDDIAYNEY----LIAEYQKSEKAAQFKMMNIESFLHS----------MDDW 514
Query: 818 KKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
+ N + DY++ R T R + + V + TIH SKGLE+ +VF+A A + I
Sbjct: 515 ENNPDNWDGSLYDYLN-RITLLTRDDTEEEKGEVNIMTIHSSKGLEFPVVFIAGAEDGLI 573
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMM---DANWQLLQPSRFLKE 934
P +V E VEEERRL YVA+TRA++KLFI PS FL E
Sbjct: 574 PHAR----SVEENDGDVEEERRLFYVAITRAQQKLFITSCRQRRKQGGITECAPSPFLDE 629
Query: 935 IPHHLREVQAEQSVQDQHENIPEGTAQ 961
IP L E E Q + E I + +Q
Sbjct: 630 IPADLVEYH-EPDAQAEEERIADIFSQ 655
>gi|42526415|ref|NP_971513.1| ATP-dependent DNA helicase PcrA [Treponema denticola ATCC 35405]
gi|449112458|ref|ZP_21749012.1| hypothetical protein HMPREF9735_02061 [Treponema denticola ATCC
33521]
gi|449115322|ref|ZP_21751786.1| hypothetical protein HMPREF9721_02304 [Treponema denticola ATCC
35404]
gi|41816608|gb|AAS11394.1| ATP-dependent DNA helicase PcrA [Treponema denticola ATCC 35405]
gi|448953099|gb|EMB33894.1| hypothetical protein HMPREF9721_02304 [Treponema denticola ATCC
35404]
gi|448955920|gb|EMB36684.1| hypothetical protein HMPREF9735_02061 [Treponema denticola ATCC
33521]
Length = 662
Score = 259 bits (663), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 226/747 (30%), Positives = 349/747 (46%), Gaps = 120/747 (16%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFT 287
+++ + LN +Q +A ++ P+LI+AG GSGK GI S ILA+TFT
Sbjct: 2 NEFTEGLNPEQFKAVTT-INGPVLIIAGAGSGKTRVITFRIAHMLDKGIPQSQILALTFT 60
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM DR+ + GK + LT+STFH+F +++ RSH +K+ S F IY + +
Sbjct: 61 NKAAKEMADRVKELTGKKL-QNLTVSTFHAFGVKVLRSHIDKIGWRSNFSIYDETDRNQL 119
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
I E R L + S D L Y LF S+ K+ + K
Sbjct: 120 IKECGREL---------KFSADALDV-----YKVGILF----------SNIKMGR--KDW 153
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ D KA + + Y L+ NA+D+ DLI +K+ PE
Sbjct: 154 TNEHDSYKA------------------LYKEYQDGLKLYNAVDFDDLIMLPIKIFKEHPE 195
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDS 527
V EY++ ++ I+VDEFQDTS QY+ ++++A N I +VGDDDQSI+S+ GA +
Sbjct: 196 VLAEYRERYRYIMVDEFQDTSTQQYNFMKLIADKN-ICVVGDDDQSIYSWRGASFENIRN 254
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KDF EI+L +NYRST I+ AA+ +I HNV R ++K + ++ G I I N
Sbjct: 255 FEKDFPEMIEIKLEQNYRSTGTILAAANGVISHNVNR-KVKALWSEKDSGRPIEIFIPEN 313
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVA 646
E A+ FI D IL S Y +L R + + +F E IP+ + G +
Sbjct: 314 EAAEADFISDMIL---SLKQREGFKYSDFGVLIRANSLSRPLEESFLEVNIPYRMSGGTS 370
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFI 706
F+++K ++ +I+ LR DD R+ + K+ ++ + ++T CS
Sbjct: 371 FFQRKEIKDLISYLRVVANPDDDVNLLRIINT---PRRGIGKKTLETLSALATENSCSMR 427
Query: 707 SA--------ACDIFGAKISGTFKRSQL-TQGRKVLLTLEMISKLVRREPSISAVITSVA 757
+A D+ G I + ++L + R LL+ + +++ VR+
Sbjct: 428 TAIRLLLENPPEDMRGKSIEDLKEFAELISTHRTQLLSGKGLAQKVRK------------ 475
Query: 758 NMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQD 817
LL+ A ++ L+ E Q+ + ++ FL + +D
Sbjct: 476 -------LLDDIAYNEY----LIAEYQKSEKAAQFKMMNIESFLHS----------MDDW 514
Query: 818 KKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
+ N+ + DY++ R T R + + V + TIH SKGLE+ +VF+A A + I
Sbjct: 515 ENNPDNLDGSLYDYLN-RITLLTRDDTEEEKGEVNIMTIHSSKGLEFPVVFIAGAEDGLI 573
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMM---DANWQLLQPSRFLKE 934
P +V E VEEERRL YVA+TRA++KLFI PS FL E
Sbjct: 574 PHAR----SVEENDGDVEEERRLFYVAITRAQQKLFITSCRQRRKQGGITECAPSPFLDE 629
Query: 935 IPHHLREVQAEQSVQDQHENIPEGTAQ 961
IP L E E Q + E I + +Q
Sbjct: 630 IPADLVEYH-EPDAQAEEERIADIFSQ 655
>gi|325662111|ref|ZP_08150729.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
4_1_37FAA]
gi|325471560|gb|EGC74780.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
4_1_37FAA]
Length = 741
Score = 259 bits (663), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 219/756 (28%), Positives = 356/756 (47%), Gaps = 116/756 (15%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAA 291
+LN +Q EA PLLI+AG GSGK GI+P NILA+TFT AA
Sbjct: 6 TLNAEQREAVF-HTEGPLLILAGAGSGKTRVLTHRIAYLIEEKGINPWNILAITFTNKAA 64
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEA 351
EMR+R+ IVG + + + +STFHS +++ R H ++L + F IY Q+ + +
Sbjct: 65 GEMRERVDDIVGFGS-ESIWVSTFHSTCVRILRRHIDRLGYDNNFTIYDSDDQKTLMKDV 123
Query: 352 VRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
+LL+ + +R +++ + M+ + ++L Y F +
Sbjct: 124 CKLLQIDTKTYRERTILSAISS------------AKDEMV--TPEEYELNAYGDFSK--- 166
Query: 412 DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQE 471
+KI A + Y L++ NALD+ DL+ +V+L T PE+ +
Sbjct: 167 -------------KKI-----AEAYKEYERQLKANNALDFDDLLVKTVQLFQTQPEILEY 208
Query: 472 YQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRK 530
YQ+ ++ I+VDE+QDT+ +Q+ L+ +LA+ + + +VGDDDQSI+ F GA+I SF K
Sbjct: 209 YQERFRYIMVDEYQDTNTVQFKLISLLAAKYKNLCVVGDDDQSIYKFRGANIQNILSFEK 268
Query: 531 DFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDA 590
+F + K I+L +NYRST I++AA+++I++NV R + K++ T+N G KI ++
Sbjct: 269 EFEHTKVIKLEQNYRSTSTILDAANAVIKNNVGR-KAKSLWTENGEGEKIQFRQFDTAYD 327
Query: 591 QCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVAFYR 649
+ +I+ I E NG A+ C + A+LYR ++F+ IP+ I GV FY
Sbjct: 328 EAEYIVGDIRERVDNGKAAYCDH---AVLYRTNAQSRLFEEKMITANIPYKIVGGVNFYA 384
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAA 709
+K ++ ++A L+T G DD RR+ + ++ ++ I + + R SF A
Sbjct: 385 RKEIKDLLAYLKTIDNGKDDLAVRRIIN---VPKRGIGLTTVNRITEAAQQRGISFYEAL 441
Query: 710 CDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQR 769
C A + RS ISKL S +A+I + E
Sbjct: 442 C---SADLVPGLGRS--------------ISKL----ESFAAMIEYFRKEAEHLSITELM 480
Query: 770 AVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFI 829
+ + G + + + L ++ +FL+ AA EE C L
Sbjct: 481 KEILTETGYVEELKAEGEEEAEVRLQNIDEFLNK--IAAYEE--------SCEEELPTLS 530
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
++ E + + V L T+H +KGLE+ V++A + P + +
Sbjct: 531 GFLEEVALVADIDSLDEESDYVVLMTLHSAKGLEFPYVYLAGMEDGIFP---SYMTITAD 587
Query: 890 KGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHHLRE----- 941
T +EEERRL YV +TRA+K+L + M+ Q + SRFLKE+P L
Sbjct: 588 DPTELEEERRLCYVGITRAKKELAMTCARRRMIRGETQYNKMSRFLKEVPPQLLSTGKIV 647
Query: 942 -------------VQAEQSVQDQHENIPEGTAQFTI 964
VQA+QS Q + I + QF +
Sbjct: 648 EKEELELPKQNAYVQAKQSFQAKPFMISKPVQQFGV 683
>gi|449120677|ref|ZP_21757060.1| hypothetical protein HMPREF9725_02525 [Treponema denticola H1-T]
gi|449123082|ref|ZP_21759412.1| hypothetical protein HMPREF9727_02172 [Treponema denticola MYR-T]
gi|448946602|gb|EMB27456.1| hypothetical protein HMPREF9727_02172 [Treponema denticola MYR-T]
gi|448947248|gb|EMB28095.1| hypothetical protein HMPREF9725_02525 [Treponema denticola H1-T]
Length = 662
Score = 259 bits (663), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 227/747 (30%), Positives = 348/747 (46%), Gaps = 120/747 (16%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFT 287
+++ + LN +Q +A ++ P+LI+AG GSGK GI S ILA+TFT
Sbjct: 2 NEFTEGLNPEQFKAVT-TINGPVLIIAGAGSGKTRVITFRIAHMLDKGIPQSQILALTFT 60
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM DRI + GK + LT+STFH+F +++ RSH +K+ S F IY + +
Sbjct: 61 NKAAKEMADRIKELTGKKL-QNLTVSTFHAFGVKVLRSHIDKIGWRSNFSIYDETDRNQL 119
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
I E R L + S D L Y LF S+ K+ + K
Sbjct: 120 IKECGREL---------KFSADALDV-----YKVGILF----------SNIKMGR--KDW 153
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ D KA + + Y L+ NA+D+ DLI +K+ PE
Sbjct: 154 TNEHDSYKA------------------LYKEYQEGLKLYNAVDFDDLIMLPIKIFKEHPE 195
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDS 527
V EY++ ++ I+VDEFQDTS QY+ ++++A N I +VGDDDQSI+S+ GA +
Sbjct: 196 VLAEYRERYRYIMVDEFQDTSTQQYNFMKLIADKN-ICVVGDDDQSIYSWRGASFENIRN 254
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KDF EI+L +NYRST I+ AA+ +I HNV R ++K + ++ G I I N
Sbjct: 255 FEKDFPEMIEIKLEQNYRSTGTILAAANGVISHNVNR-KVKALWSEKDSGRPIEIFIPEN 313
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVA 646
E A+ FI D IL S Y +L R + + +F E IP+ + G +
Sbjct: 314 EAAEADFISDMIL---SLKQREGFKYSDFGVLIRANSLSRPLEESFLEVNIPYRMSGGTS 370
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFI 706
F+++K ++ +I+ LR DD R+ + K+ ++ + ++T CS
Sbjct: 371 FFQRKEIKDLISYLRVVANPDDDVNLLRIINT---PRRGIGKKTLETLSVLATENSCSMR 427
Query: 707 SA--------ACDIFGAKISGTFKRSQLTQG-RKVLLTLEMISKLVRREPSISAVITSVA 757
+A D+ G I + ++L R LL+ + +++ VR+
Sbjct: 428 TAIRLLLENPPEDMRGKSIEDLKEFAELISAHRTQLLSGKGLAQKVRK------------ 475
Query: 758 NMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQD 817
LL+ A ++ L+ E Q+ + ++ FL + +D
Sbjct: 476 -------LLDDIAYNEY----LIAEYQKSEKAAQFKMMNIESFLHS----------MDDW 514
Query: 818 KKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
+ N+ + DY++ R T R + + V + TIH SKGLE+ +VF+A A + I
Sbjct: 515 ENNPDNLDGSLYDYLN-RITLLTRDDTEEEKGEVNIMTIHSSKGLEFPVVFIAGAEDGLI 573
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMM---DANWQLLQPSRFLKE 934
P +V E VEEERRL YVA+TRA++KLFI PS FL E
Sbjct: 574 PHAR----SVEENDGDVEEERRLFYVAITRAQQKLFITSCRQRRKQGGITECAPSPFLDE 629
Query: 935 IPHHLREVQAEQSVQDQHENIPEGTAQ 961
IP L E E Q + E I + +Q
Sbjct: 630 IPADLVEYH-EPDAQAEEERIADIFSQ 655
>gi|429123657|ref|ZP_19184190.1| ATP-dependent DNA helicase [Brachyspira hampsonii 30446]
gi|426280490|gb|EKV57504.1| ATP-dependent DNA helicase [Brachyspira hampsonii 30446]
Length = 665
Score = 259 bits (662), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 214/725 (29%), Positives = 338/725 (46%), Gaps = 111/725 (15%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASE 293
LN++Q +A + PLL +AG GSGK G+ PS ILA+TFT AA+E
Sbjct: 5 LNEEQRQA-VEHIDGPLLALAGAGSGKTRVITERIAYLIKHGVLPSQILAVTFTNKAAAE 63
Query: 294 MRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVR 353
MR+RI ++ K K+L +STFHSF +++ + +KL + F IY R
Sbjct: 64 MRERITKLL-KEKPKQLVVSTFHSFCVRVLKGDIDKLGYKNNFSIYSSSDSRT------- 115
Query: 354 LLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDV 413
L+ N +++ I + L D + F N M +++ ++ E+
Sbjct: 116 LIRN----ILREIKINTLNYDENLFAWYIDRFKNNLM-----KPYEVEPHDDLEK----- 161
Query: 414 AKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQ 473
I + E Y L+ NA+D++DLI+ ++ L FPEV +YQ
Sbjct: 162 -----------------IAKRVYEVYQSYLKGYNAVDFNDLINLTIDLYIEFPEVLDKYQ 204
Query: 474 DSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDSFRKDF 532
+ ++ I+VDE+QDT+ QY L +LAS R I +VGDDDQSI++F GAD+S SF ++
Sbjct: 205 ERFRYIMVDEYQDTNFAQYKLTTLLASKYRNIAVVGDDDQSIYAFRGADVSNILSFENEY 264
Query: 533 LNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQC 592
+ K + LTRNYRST+ I+EAA S+I +N +R K V + G I C +E +
Sbjct: 265 PDAKIVTLTRNYRSTKAILEAAHSVISNNTQRKD-KKVVAEGEEGIPPTIMPCEDEREEA 323
Query: 593 AFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGV-AFYRKK 651
F+ D I+ ++ + +Y A+L+R ++F+ AFR R +P+ + G FY +K
Sbjct: 324 QFVADSIINYSI---SKRLNYEDFAVLFRMNAQSRLFEEAFRLRGLPYTVVGAFQFYERK 380
Query: 652 VVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACD 711
++ I+A L L + E D++S +R I+
Sbjct: 381 EIKDILAYLN------------------LFVNPE---------DEVSLLR---VINIPKR 410
Query: 712 IFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAV 771
GA + + G + TL + P A I ++ + L
Sbjct: 411 GIGAVAINNLNEASIKNGVSLYETLLNYESMEEISPKAKAGIKDFLEVIEHYHNLFTVDK 470
Query: 772 VDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN-------- 823
D + KL N V+ Y ++ + TK AK+ NV+ G +
Sbjct: 471 NDLERPKLYENINKFLDVIAY-HNEILNSSDTKEQGAKKIENVESLMNGILEYEKSNKNA 529
Query: 824 VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
LK ++D I E + D + + L +IH +KGLE+ V++ + +P H+
Sbjct: 530 TLKNYLDRILLMSIEE-QNDEEDKKKGIMLMSIHAAKGLEFPYVYICGMEDGIMP--HQ- 585
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILY----VMMDANWQLLQPSRFLKEIPHHL 939
+++E G +EEERRL YVAMTRA+K L + Y M + PS FL+E+ +L
Sbjct: 586 -KSLDENG--LEEERRLCYVAMTRAKKHLTLTYCRSRTKMGRKIE-CTPSVFLEEMSENL 641
Query: 940 REVQA 944
E A
Sbjct: 642 PEEMA 646
>gi|397678795|ref|YP_006520330.1| ATP-dependent DNA helicase pcrA [Mycobacterium massiliense str. GO
06]
gi|395457060|gb|AFN62723.1| ATP-dependent DNA helicase pcrA [Mycobacterium massiliense str. GO
06]
Length = 742
Score = 259 bits (662), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 222/747 (29%), Positives = 348/747 (46%), Gaps = 116/747 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN QQ AA PLLIVAG GSGK +SP ILA+TFT
Sbjct: 13 LDGLNPQQ-RAAVAHQGAPLLIVAGAGSGKTAVLTRRIAYLLAARDVSPGQILAITFTNK 71
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EMR+R+G IV + + +STFHS +++ R+ A L S F IY RR +
Sbjct: 72 AAAEMRERVGRIVAN-RVQSMWVSTFHSSCVRILRNQASLLPGLNSNFSIYDSDDSRRLL 130
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
+++ + L +KR S +L T ++S+ K N+
Sbjct: 131 ----QMIGRDMGLDIKRYSPRLLAT--------------------AISNLK----NELIS 162
Query: 409 DGMDVAK-ASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
VA +G E R +I A + Y LR+ NALD+ DLI +V +L FP+
Sbjct: 163 PEQAVANLTAGGQDGELRGDLPQIVADVYGEYQRRLRAANALDFDDLIGETVAVLQQFPQ 222
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLL-QILASH------------NRITIVGDDDQSI 514
+ Q Y+ ++ I+VDE+QDT+ QY L+ +++ +H + +VGD DQSI
Sbjct: 223 IAQFYRRKFRHILVDEYQDTNHAQYVLVRELVGAHVDHTVDPDGPEPAELCVVGDADQSI 282
Query: 515 FSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDN 574
++F GA I + F +D+ N K I L +NYRST+ I+ AA+S+I N R + K + TD+
Sbjct: 283 YAFRGATIRNIEEFERDYPNAKTILLEQNYRSTQNILSAANSVIAKNANRRE-KRLWTDS 341
Query: 575 SHGSKIIIKECHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQT 631
G I+ NE + +FI ID + + S +YG IA+ YR + + +
Sbjct: 342 GEGELIVGYVADNEHDEASFIAREIDGLFDR------SDANYGDIAVFYRTNNNSRSLEE 395
Query: 632 AFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV 690
F IP+ + GV FY +K +R I+A LR D RR+ ++ +
Sbjct: 396 IFIRTGIPYKVVGGVRFYERKEIRDIVAYLRVLTNPGDAVSLRRILNT-------PRRGI 448
Query: 691 IDHIDKISTIRK----CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKL---V 743
D + + F A D K++ RS+ + + ++M+ ++ +
Sbjct: 449 GDRAEACVAVHAETNGIGFGEALADAAAGKVAMLNSRSE----KAIAAFMDMLDQIRVTL 504
Query: 744 RRE-----PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVT 798
R + P I V+ +V N +Y LE + D +L DN L L++
Sbjct: 505 RTDDPGALPDIGDVVEAVLNHAGYRYELENSS----DPQELARLDN-----LNELVSVAH 555
Query: 799 DFLSTKFTAAKEEGNV---DQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTT 855
+F + A +V D+D L+AF++ +S + VT+ T
Sbjct: 556 EFSADAANAQAAGEDVPVDDEDVGAPPGSLEAFLERVS--LVADADELPESSAGVVTMMT 613
Query: 856 IHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFIL 915
+H +KGLE+ +VFV + P + V + EERRL YV +TRAR++L++
Sbjct: 614 LHTAKGLEFPVVFVTGWEDGMFPHMRALGDPV-----ELAEERRLAYVGITRARQRLYLS 668
Query: 916 YVMMDANW--QLLQP-SRFLKEIPHHL 939
+ ++W ++ P SRFL+EIP L
Sbjct: 669 RAKVRSSWGQPMMNPESRFLQEIPQEL 695
>gi|239825841|ref|YP_002948465.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. WCH70]
gi|239806134|gb|ACS23199.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. WCH70]
Length = 732
Score = 259 bits (662), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 223/723 (30%), Positives = 345/723 (47%), Gaps = 107/723 (14%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFT 287
K L +LN+QQ +AA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 7 KLLANLNEQQ-QAAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKRVAPWNILAITFT 65
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM++R+ ++G A A+E+ ISTFHS +++ R +++ F I Q
Sbjct: 66 NKAAREMKERVQGLLGGA-AEEIWISTFHSMCVRILRRDIDRIGIDRNFSILDTTDQ--- 121
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
+ +L+N IL K I G + S + +L KF
Sbjct: 122 ----LSVLKN--ILKEKNIDPKKFDPRAILGTI-------------SNAKNELLTPEKFA 162
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ K + + KI ++ E Y L +ALD+ DLI +++L PE
Sbjct: 163 K----------KVSSYYEKIVSDV----YEEYQKRLLRNHALDFDDLIMTTIQLFERVPE 208
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFD 526
V + YQ ++ I +DE+QDT+ QY L+++LAS I +VGD DQSI+ + GADI
Sbjct: 209 VLEHYQYKFQYIHIDEYQDTNRAQYVLVKMLASRFKNICVVGDADQSIYRWRGADIQNIL 268
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
SF KD+ N K I L +NYRST+ I++AA+ +I+HNV R + K + T+N G KI+ E
Sbjct: 269 SFEKDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNR-KPKKLWTENPEGQKIVYYEAM 327
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGV 645
NE + F++ KI E+ +G Y AILYR +V + + IP+ I G+
Sbjct: 328 NESDEAQFVVGKIKEYVDSGKR---RYSDFAILYRTNAQSRVMEEVLLKSNIPYQIVGGL 384
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSF 705
FY +K ++ ++A LR DD R+ ++ + IDKI + +
Sbjct: 385 KFYDRKEIKDVLAYLRVIANPNDDISLLRIINV------PKRGIGVSSIDKIVSYASENG 438
Query: 706 ISAACDIFGAKISGTFKRS--QLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
+S + + G R+ L + R+ L + + V SV +V +
Sbjct: 439 LSVFEALGELEHIGLSARTAASLIEFRRQLEQWAQLQEYV-----------SVTELVEE- 486
Query: 764 YLLEQRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
V+D G + +L + L + Q L ++ +FLS K NV +DK
Sbjct: 487 -------VLDKSGYREMLKAEKTLEA--QSRLENIDEFLSV----TKHFENVSEDKS--- 530
Query: 823 NVLKAFI-DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
L AF+ D + + +N+++V L T+H +KGLE+ +VF+ E P
Sbjct: 531 --LIAFLTDLALISDIDQLNETNGENQDAVVLMTLHSAKGLEFPVVFLIGMEEGIFPHSR 588
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDA--NWQLLQP-SRFLKEIPHH 938
+ G +EEERRL YV +TRA ++LF+ M + + P SRF++EIP
Sbjct: 589 SLD-----DGDEMEEERRLAYVGITRAEEELFLTSAQMRTLFGYTNINPVSRFIREIPEE 643
Query: 939 LRE 941
L E
Sbjct: 644 LVE 646
>gi|19552081|ref|NP_600083.1| helicase [Corynebacterium glutamicum ATCC 13032]
gi|62389744|ref|YP_225146.1| ATP-dependent helicase PcrA [Corynebacterium glutamicum ATCC 13032]
gi|21323620|dbj|BAB98247.1| Superfamily I DNA and RNA helicases [Corynebacterium glutamicum
ATCC 13032]
gi|41325079|emb|CAF19560.1| ATP-DEPENDENT HELICASE PCRA [Corynebacterium glutamicum ATCC 13032]
gi|385143001|emb|CCH24040.1| hypothetical helicase [Corynebacterium glutamicum K051]
Length = 763
Score = 259 bits (662), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 226/764 (29%), Positives = 347/764 (45%), Gaps = 137/764 (17%)
Query: 234 TQNMPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISP 278
T PD + LN+QQ AA + +PLLIVAG GSGK G+ P
Sbjct: 7 TPGSPD----LIDGLNEQQ-RAAVEHIGSPLLIVAGAGSGKTAVLTRRIAYLMRYRGVHP 61
Query: 279 SNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFL 337
ILA+TFT AA+EMR+R+ +VG A+ + ++TFHS +++ R A+ +E + F
Sbjct: 62 QQILAITFTNKAAAEMRERVSQLVGP-VAERMWVATFHSVCVRILRQQAQLVEGLNTNFT 120
Query: 338 IYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSS 397
IY RR + + LE L +K+ S L G ++ L L + +
Sbjct: 121 IYDSDDSRRLLTMIAKDLE----LDIKKFSARTLL--GAISNLKNELVTPQEALADAERT 174
Query: 398 FKLCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISC 457
+N +E VA+A Y LR NA+D+ DLI
Sbjct: 175 -----HNPYE---TVVARA-------------------FSEYQSRLRRANAVDFDDLIGE 207
Query: 458 SVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-----NRITIVGDDDQ 512
+V++ P V + Y+ ++ +++DE+QDT+ QY L+ L + + +VGD DQ
Sbjct: 208 TVRIFREHPPVAEYYRRRFRHVLIDEYQDTNHAQYELISTLVGKPDQDPSELCVVGDSDQ 267
Query: 513 SIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQT 572
SI++F GA I + F +DF N + I L +NYRST+ I+ AA+++I N R + KN+ T
Sbjct: 268 SIYAFRGATIRNIEEFERDFSNARTILLEQNYRSTQTILSAANAVISQNENR-RPKNLWT 326
Query: 573 DNSHGSKIIIKECHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVF 629
G +II NE + FI ID +++H SY IAI+YR S +
Sbjct: 327 ALGEGEQIIGYVADNEHDEARFIASEIDNLVDHG-------MSYSDIAIMYRTNNSSRAL 379
Query: 630 QTAFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVF-----------K 677
+ F +P+ + G FY +K +R IIA LR D RR+ +
Sbjct: 380 EDVFMRTGVPYKVVGGTKFYERKEIRDIIAYLRVLENPDDTVNLRRIINTPKRGIGDRAQ 439
Query: 678 AFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLE 737
AF+ L E + SF A D K+ R G+ ++
Sbjct: 440 AFIALHSENN--------------QISFGQALLDAALGKVDLLGAR-----GKNAVIKFN 480
Query: 738 MISKLVRRE-----------PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDL 786
+ +R E P I VI+ + ++ K LE A D G L+ N+L
Sbjct: 481 ELFDALRSELPTMVNEVTGLPDIGQVISRILDITGYKAELE--ASNDPQDGARLDNLNEL 538
Query: 787 RSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHD 846
SV + +D AA N + + L+AF++ +S Q D
Sbjct: 539 VSVAREFSSD----------AANRMVNEVPEGEAQPGSLQAFLERVSLVADAD---QIPD 585
Query: 847 NENS-VTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAM 905
++N VTL T+H +KGLE+ IVF+ + + P + A + EERRL YV +
Sbjct: 586 SDNGVVTLMTLHTAKGLEFPIVFLTGWEDGQFPHLRSLGDA-----KELAEERRLAYVGI 640
Query: 906 TRARKKLFILYVMMDANWQ---LLQPSRFLKEIPHHLREVQAEQ 946
TRARK+L++ M+ ++W PSRFL+E+P L + + E+
Sbjct: 641 TRARKRLYMTRAMLRSSWGNPVTNPPSRFLQEVPAELIDWRREE 684
>gi|291303528|ref|YP_003514806.1| ATP-dependent DNA helicase PcrA [Stackebrandtia nassauensis DSM
44728]
gi|290572748|gb|ADD45713.1| ATP-dependent DNA helicase PcrA [Stackebrandtia nassauensis DSM
44728]
Length = 762
Score = 259 bits (662), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 227/749 (30%), Positives = 360/749 (48%), Gaps = 116/749 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LND Q +A + PLLIVAG GSGK G+ P ILA+TFT
Sbjct: 20 LDGLNDPQRQAVLHE-GPPLLIVAGAGSGKTRVLTQRIAHLVAVRGVHPGEILAITFTNK 78
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EMRDR+ S+VG A+ + + TFH+ +++ R E+L S F +Y RR +
Sbjct: 79 AAAEMRDRVSSVVGN-RARMMWVLTFHAACMRILRREHERLNLKSTFTVYDSDDSRRLMQ 137
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ R +E +K T G L S+S K +
Sbjct: 138 QVARDMELDK----------RHTPRG---------------LLASVSRLKNELIDP---- 168
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D A A+ +TP R + A + Y+ LR+ +ALD+ D+I +V L +P+V
Sbjct: 169 --DAAMAAVETP-HHRTV-----AEAYKRYDERLRAAHALDFDDIIGHTVHLFRAYPQVA 220
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN---------RITIVGDDDQSIFSFNGA 520
+EY+ ++ ++VDE+QDT+ QY L++ L + ++ +VGD DQSI++F GA
Sbjct: 221 REYRRRFRHVMVDEYQDTNHAQYELVRALVGDDATDEEVPPSQLCVVGDADQSIYAFRGA 280
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
I F +DF + I L +NYRST+ I++AA+ +I+ N R K + TD+ G+KI
Sbjct: 281 TIRNILEFERDFPDATTILLEQNYRSTQTILDAANGVIRKNPSRKD-KKLWTDSGPGAKI 339
Query: 581 IIKECHNEDAQCAFIIDKILEHA-SNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIP 639
+ NE + A++ ++I A S+G +A+ YR +VF+ AF R IP
Sbjct: 340 KRYDADNEHDEAAWVAERIDALADSDG----VKPRDVAVFYRTNAQSRVFEDAFIRRGIP 395
Query: 640 FN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIS 698
+ + GV FY +K VR +A LR T+ D RRV + ++ R + +D ++
Sbjct: 396 YKVVGGVRFYERKEVRDALAYLRLTVNEDDIVSGRRVVN---VPKRGIGDRAVACVDALA 452
Query: 699 TIRKCSFISAACDI-----FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI 753
+ SF +A + + +G K K + L+ + V V+
Sbjct: 453 DREQISFGAALRRVDEAVGISTRAAGGVK--------KFVAVLDAARERVDAGEPPEVVL 504
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKE-EG 812
++ N YL E A D +D LQ L++ ++ ++T E E
Sbjct: 505 ETLLN--DSGYLAELNASTD-------PQDEARVDNLQELVS-----VAREYTERVEAEV 550
Query: 813 NVDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAK 871
+VD D G + F++ +S + + D++ VTL T+H +KGLE+D+VF++
Sbjct: 551 DVDSDVPGP--TVANFLEQVSLVADADQIPDPEADSDGVVTLMTLHTAKGLEFDVVFLSG 608
Query: 872 ANETEIPLVHEFN-GAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQ 927
++ P HE + G E +EEERRL YV +TRAR+ L + + W Q
Sbjct: 609 MDQGVFP--HERSLGEAKE----MEEERRLAYVGITRARQLLHVSRAETRSAWGQPQFHP 662
Query: 928 PSRFLKEIPHHLREVQAEQSVQDQHENIP 956
PS+FL+E+P L ++AE++V IP
Sbjct: 663 PSQFLEEMPGEL--LEAERAVAKSALGIP 689
>gi|449125661|ref|ZP_21761963.1| hypothetical protein HMPREF9723_02007 [Treponema denticola OTK]
gi|448939630|gb|EMB20547.1| hypothetical protein HMPREF9723_02007 [Treponema denticola OTK]
Length = 662
Score = 259 bits (661), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 226/747 (30%), Positives = 348/747 (46%), Gaps = 120/747 (16%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFT 287
+++ + LN +Q +A ++ P+LI+AG GSGK GI S ILA+TFT
Sbjct: 2 NEFTEGLNPEQFKAVTT-INGPVLIIAGAGSGKTRVITFRIAHMLDKGIPQSQILALTFT 60
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM++RI + GK + LT+STFH+F +++ RSH +K+ S F IY + +
Sbjct: 61 NKAAKEMQERIKELTGKKL-QNLTVSTFHAFGVKVLRSHIDKIGWRSNFSIYDETDRNQL 119
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
I E R L + S D L Y LF S+ K+ + K
Sbjct: 120 IKECGREL---------KFSADALDV-----YKVGILF----------SNIKMGR--KDW 153
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ D KA + + Y L+ NA+D+ DLI +K+ PE
Sbjct: 154 TNEHDSYKA------------------LYKEYQEGLKLYNAVDFDDLIMLPIKIFKEHPE 195
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDS 527
V EY++ ++ I+VDEFQDTS QY+ ++++A N I +VGDDDQSI+S+ GA +
Sbjct: 196 VLAEYRERYRYIMVDEFQDTSTQQYNFMKLIADKN-ICVVGDDDQSIYSWRGASFENIRN 254
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KDF EI+L +NYRST I+ AA+ +I HNV R ++K + ++ G I I N
Sbjct: 255 FEKDFPEMIEIKLEQNYRSTGTILAAANGVISHNVNR-KVKALWSEKDSGRPIEIFIPEN 313
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVA 646
E A+ FI D IL S Y +L R + + +F E IP+ + G +
Sbjct: 314 EAAEADFISDMIL---SLKQREGFKYSDFGVLIRANSLSRPLEESFLEVNIPYRMSGGTS 370
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFI 706
F+++K ++ +I+ LR DD R+ + K+ ++ + ++T CS
Sbjct: 371 FFQRKEIKDLISYLRVVANPDDDVNLLRIINT---PRRGIGKKTLETLSALATENSCSMR 427
Query: 707 SA--------ACDIFGAKISGTFKRSQLTQG-RKVLLTLEMISKLVRREPSISAVITSVA 757
+A D+ G I + ++L R LL+ + +++ VR+
Sbjct: 428 TAIRLLLENPPEDMRGKSIEDLKEFAELISAHRTQLLSGKGLAQKVRK------------ 475
Query: 758 NMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQD 817
LL+ A ++ L+ E Q+ + ++ FL + +D
Sbjct: 476 -------LLDDIAYNEY----LIAEYQKSEKAAQFKMMNIESFLHS----------MDDW 514
Query: 818 KKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
+ N + DY++ R T R + + V + TIH SKGLE+ +VF+A A + I
Sbjct: 515 ENNPDNWDASLYDYLN-RITLLTRDDTEEEKGEVNIMTIHSSKGLEFPVVFIAGAEDGLI 573
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMM---DANWQLLQPSRFLKE 934
P +V E VEEERRL YVA+TRA++KLFI PS FL E
Sbjct: 574 PHAR----SVEENDGDVEEERRLFYVAITRAQQKLFITSCRQRRKQGGITECAPSPFLDE 629
Query: 935 IPHHLREVQAEQSVQDQHENIPEGTAQ 961
IP L E E Q + E I + +Q
Sbjct: 630 IPADLVEYH-EPDAQAEEERIADIFSQ 655
>gi|384209664|ref|YP_005595384.1| ATP-dependent DNA helicase [Brachyspira intermedia PWS/A]
gi|343387314|gb|AEM22804.1| ATP-dependent DNA helicase [Brachyspira intermedia PWS/A]
Length = 665
Score = 259 bits (661), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 216/728 (29%), Positives = 338/728 (46%), Gaps = 117/728 (16%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASE 293
LN++Q +A + PLL +AG GSGK G+ PS ILA+TFT AA+E
Sbjct: 5 LNEEQRQA-VEHIDGPLLALAGAGSGKTRVITERIAYLIKHGVLPSQILAVTFTNKAAAE 63
Query: 294 MRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVR 353
MR+RI ++ K K+L +STFHSF +++ + EKL + F IY +
Sbjct: 64 MRERITKLL-KEKPKQLVVSTFHSFCVRVLKGDIEKLGYKNNFSIYSSSDSKT------- 115
Query: 354 LLENEKILVVKRISTDMLTTD-GHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
L+ N +++ I + L D G F + +D
Sbjct: 116 LIRN----ILREIKVNTLNYDEGLFAWY------------------------------ID 141
Query: 413 VAKASGKTPAEFRKIGD--EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
K + P E D +I + E Y L+ NA+D++DLI+ ++ L FPEV
Sbjct: 142 RFKNNLMKPYEVEPHDDLEKIAKRVYEVYQSYLKGYNAVDFNDLINLTIDLYVEFPEVLD 201
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDSFR 529
+YQ+ ++ I+VDE+QDT+ QY L +LAS R I +VGDDDQSI++F GAD+S SF
Sbjct: 202 KYQERFRYIMVDEYQDTNFAQYKLTTLLASKYRNIAVVGDDDQSIYAFRGADVSNILSFE 261
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
++ + K + LT+NYRST+ I+EAA S+I +N +R K V + G I C +E
Sbjct: 262 NEYPDAKIVTLTKNYRSTKAILEAAHSVISNNTQRKD-KKVVAEGEEGIPPTIMPCEDER 320
Query: 590 AQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGV-AFY 648
+ F+ D I+ ++ + +Y A+L+R ++F+ AFR R +P+ + G FY
Sbjct: 321 EEAQFVADSIINYSI---SKRLNYEDFAVLFRMNAQSRLFEEAFRLRGLPYTVVGAFQFY 377
Query: 649 RKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISA 708
+K ++ I+A L L + E D++S +R I+
Sbjct: 378 ERKEIKDILAYLN------------------LFVNPE---------DEVSLLR---VINI 407
Query: 709 ACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQ 768
GA + + G + TL + P A I ++ + L
Sbjct: 408 PKRGIGAVAINNLNEASIKNGVSLYHTLLNYESMDEISPKAKAGIKDFLEVIEHYHNLFT 467
Query: 769 RAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN----- 823
D + KL N V+ Y ++ + TK AK+ NV+ G +
Sbjct: 468 VDKNDLERPKLYENINKFLDVIAY-HNEILNSSDTKEQGAKKMENVESLMNGILEYEKSN 526
Query: 824 ---VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
LK ++D I E + D + + L +IH +KGLE+ V++ + +P
Sbjct: 527 KNATLKNYLDRILLMSIEE-QNDDEDKKKGIMLMSIHAAKGLEFPYVYICGMEDGIMP-- 583
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILY----VMMDANWQLLQPSRFLKEIP 936
H+ +++E G +EEERRL YVAMTRA+K L + Y M + PS FL+E+
Sbjct: 584 HQ--KSLDENG--LEEERRLCYVAMTRAKKHLTLTYCRSRTKMGRKVE-CTPSVFLEEMS 638
Query: 937 HHLREVQA 944
+L E A
Sbjct: 639 ENLPEEMA 646
>gi|168334212|ref|ZP_02692415.1| ATP-dependent DNA helicase PcrA [Epulopiscium sp. 'N.t. morphotype
B']
Length = 731
Score = 258 bits (660), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 224/779 (28%), Positives = 368/779 (47%), Gaps = 117/779 (15%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAA 291
+LND+Q + A ++ PLLI+AG GSGK + P ILA+TFT AA
Sbjct: 2 NLNDRQ-KKAVQHVNGPLLILAGAGSGKTRVLTQRIANLIENHQVQPWEILAITFTNKAA 60
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEA 351
+EMR+R+ + VG+ K + ISTFHS +++ R E + T F IY +Q+ I +
Sbjct: 61 AEMRERMTNDVGEDVLKNMWISTFHSMCVRILRRFGESIGYTKYFTIYDSAEQKITIKDV 120
Query: 352 VRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
++ + NEK V + + + + F R +L
Sbjct: 121 MKEMNINEKEFQVGAVFSHISSKKNQFILPRQAL-------------------------- 154
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
++ FR + I A I + Y L N +D+ DL+ L + P+V
Sbjct: 155 -------KESEGNFR---EHIIAKIYDAYQDKLYENNVMDFDDLLVNVCILFNNHPDVLS 204
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDSFR 529
YQ+ +K I+VDE+QDT+ +QY L++ LA H + +VGDDDQSI+ + GADIS F
Sbjct: 205 FYQNKFKYILVDEYQDTNCVQYELIRQLADKHKNLCVVGDDDQSIYGWRGADISNILEFE 264
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
KDF N I+L +NYRST+ I+EAA++++++N R + K + TDN G +I + NE
Sbjct: 265 KDFENTTIIKLEQNYRSTKNILEAANAVVKNNENR-KPKVLFTDNETGEQIELYVVKNEY 323
Query: 590 AQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFY 648
+ I +I + S Y AILYR +V + + IP+ + GV FY
Sbjct: 324 READVIAAQISKDLSEYRRD---YKDFAILYRTNAQSRVLEEKMIQSSIPYRMLGGVRFY 380
Query: 649 RKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISA 708
+K ++ +++ L+ + DD RR+ + ++ ID I + + + +F
Sbjct: 381 ERKEIKDLVSYLKIIVNVQDDVAARRIIN---IPKRGIGAASIDKIQQAANDYQVNFYEV 437
Query: 709 ACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKL--VRREPSISAVITSVANMVPQKYLL 766
A +I I G T KV + +I +L + +E +I A++ ++
Sbjct: 438 AKNIRQFGILGK------TATEKVSVFANLIEELKELAQEENILALLQAI---------- 481
Query: 767 EQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLS--TKFTAAKEEGNVDQDKKGCINV 824
+V D L E + + L +V +F+S + + EE N
Sbjct: 482 ----IVKTDYNNFLKETEPEDAADRIL--NVREFVSKAAAYVQSNEEAN----------- 524
Query: 825 LKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
L F++ I+ + +++ N N+V L T+H SKGLE+ +VF+ E P
Sbjct: 525 LNNFLEEITLVADVDNY----DQNSNAVVLMTLHSSKGLEFPVVFMPGLEEGLFP---SH 577
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHHLR 940
A +E T +EEERRL YV +TRAR+KL+IL M + ++PSRF+ E+P +
Sbjct: 578 MSASDEDKTKLEEERRLCYVGITRAREKLYILQAEERMTYGQIKAVEPSRFIAELPAEVI 637
Query: 941 EVQ-----AEQSVQDQHENIPEGTAQFTINLPRE--ENCCETDLVSTDFLNVQLSGAAT 992
+ + + ++ +E + +F I P + E+ D V+ D + ++ G T
Sbjct: 638 RINKVFASKKYAKKNNYEPTKKSDIEFKIWNPHKKMESTIIEDFVTGDIVMHRMFGKGT 696
>gi|445064134|ref|ZP_21376235.1| ATP-dependent DNA helicase [Brachyspira hampsonii 30599]
gi|444504485|gb|ELV05146.1| ATP-dependent DNA helicase [Brachyspira hampsonii 30599]
Length = 665
Score = 258 bits (660), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 213/725 (29%), Positives = 337/725 (46%), Gaps = 111/725 (15%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASE 293
LN++Q +A + PLL +AG GSGK G+ PS ILA+TFT AA+E
Sbjct: 5 LNEEQRQA-VEHIDGPLLALAGAGSGKTRVITERIAYLIKHGVLPSQILAVTFTNKAAAE 63
Query: 294 MRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVR 353
MR+RI ++ K K+L +STFHSF +++ + EKL + F IY R
Sbjct: 64 MRERITKLL-KEKPKQLVVSTFHSFCVRVLKGDIEKLGYKNNFSIYSSSDSRT------- 115
Query: 354 LLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDV 413
L+ N +++ I + L D + + N M +++ ++ E+
Sbjct: 116 LIRN----ILREIKINTLNYDENLFAWYIDRYKNNLM-----KPYEVEPHDDLEK----- 161
Query: 414 AKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQ 473
I + E Y L+ NA+D++DLI+ ++ L FPEV ++YQ
Sbjct: 162 -----------------IAKRVYEVYQSYLKGYNAVDFNDLINLTIDLYIEFPEVLEKYQ 204
Query: 474 DSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDSFRKDF 532
+ ++ I+VDE+QDT+ QY L +LAS R I +VGDDDQSI++F GAD+S SF ++
Sbjct: 205 ERFRYIMVDEYQDTNFAQYKLTTLLASKYRNIAVVGDDDQSIYAFRGADVSNILSFENEY 264
Query: 533 LNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQC 592
+ K + LT+NYRST+ I+EAA S+I N +R K V + G I C +E +
Sbjct: 265 PDAKIVTLTKNYRSTKAILEAAHSVISKNTQRKD-KKVVAEGEEGIPPTIMPCEDEREEA 323
Query: 593 AFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGV-AFYRKK 651
F+ D I+ ++ +Y A+L+R ++F+ AFR R +P+ + G FY +K
Sbjct: 324 QFVADSIINYSI---TKRLNYEDFAVLFRMNAQSRLFEEAFRLRGLPYTVVGAFQFYERK 380
Query: 652 VVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACD 711
++ I+A L L + E D++S +R I+
Sbjct: 381 EIKDILAYLN------------------LFVNPE---------DEVSLLR---VINIPKR 410
Query: 712 IFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAV 771
GA + + G + TL + P A I ++ + L
Sbjct: 411 GIGAVAINNLNEASIKNGVSLYDTLLNYESMEEISPKAKAGIKDFLEVIEHYHNLFTVDK 470
Query: 772 VDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN-------- 823
D + KL N V+ Y ++ + TK AK+ NV+ G +
Sbjct: 471 NDLERPKLYENINKFLDVIAY-HNEILNSSDTKEQGAKKMENVESLMNGILEYEKSNKNA 529
Query: 824 VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
LK ++D I E + D + + L +IH +KGLE+ V++ + +P H+
Sbjct: 530 TLKNYLDRILLMSIEE-QNDEEDKKKGIMLMSIHAAKGLEFPYVYICGMEDGIMP--HQ- 585
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILY----VMMDANWQLLQPSRFLKEIPHHL 939
+++E G +EEERRL YVAMTRA+K L + Y M + PS FL+E+ +L
Sbjct: 586 -KSLDENG--LEEERRLCYVAMTRAKKHLTLTYCRSRTKMGRKVE-CTPSVFLEEMSENL 641
Query: 940 REVQA 944
E A
Sbjct: 642 PEEMA 646
>gi|409123543|ref|ZP_11222938.1| PcrA-like UvrD/Rep family ATP-dependent DNA helicase [Gillisia sp.
CBA3202]
Length = 773
Score = 258 bits (660), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 225/736 (30%), Positives = 349/736 (47%), Gaps = 139/736 (18%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
YL LND Q A ++++AG GSGK G+ P NIL++TFT
Sbjct: 4 YLAELNDAQ-RAPVLQKDGAMIVIAGAGSGKTRVLTYRIAYLMSKGVDPFNILSLTFTNK 62
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ RI IVG + AK L + TFHS ++ R A+KL S F IY +R I
Sbjct: 63 AAREMKKRISQIVGSSEAKNLWMGTFHSIFARMLRMEADKLGYPSNFTIYDTQDSQRLIS 122
Query: 350 EAVRLLENEKIL-----VVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYN 404
++ + +K + V RIS+ + SL + A
Sbjct: 123 AIIKEMGLDKDVYKYKQVYSRISS-----------YKNSLITVKAY-------------- 157
Query: 405 KFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLST 464
F+ + A A K P ++GD I +NY A+D+ DL+ + +LL+
Sbjct: 158 -FQNPELREADAMAKKP----RLGD-----IYKNYVERCFKAGAMDFDDLLLKTNELLNR 207
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADIS 523
FPEV Q+YQ+ ++ I+VDE+QDT+ QY +++ L+ I +VGDD QSI++F GA+I+
Sbjct: 208 FPEVLQKYQNRFRYILVDEYQDTNHSQYLIVKALSDKFQNICVVGDDAQSIYAFRGANIN 267
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
+F+KD+ N + RL +NYRST+ IV AA+S+I N + + K V T N G KII+
Sbjct: 268 NILNFQKDYDNVQMYRLEQNYRSTKNIVNAANSIIDKNKTKLE-KVVWTANDDGPKIIVN 326
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH 643
+ + ++ I E N + G AILYR + + A R+R+IP+ I+
Sbjct: 327 RLLTDGDEGRYVASSIFE---NKMQKQMNNGDFAILYRTNAQSRAMEDALRKREIPYRIY 383
Query: 644 G-VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH--------- 693
G ++FY++K ++ ++A LR + D+ E KR+I+
Sbjct: 384 GGLSFYQRKEIKDVLAYLRLLVNPNDE---------------EALKRIINFPARGIGSTT 428
Query: 694 IDKIST----IRKCSF-ISAACDIFGAKI-SGTFKRSQLTQGRKVLLTLEMISKLVRREP 747
IDK++ K F I D KI SGT R++L ++ + +++++
Sbjct: 429 IDKLTIAANQYGKSIFEIIENIDHLDLKINSGT--RNKLANFANMIKSFKILTE------ 480
Query: 748 SISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTA 807
+A VA+ V +K L Q D + +N ++ LL + DF+
Sbjct: 481 --NADAFVVADTVAKKTGLVQELKKDGTPEGIAKIEN-----IEELLNGIRDFV------ 527
Query: 808 AKEEGNVDQDKKGCINVLKAFIDYIS-----ERETEHFRTQRHDNENSVTLTTIHQSKGL 862
EG Q+ L F++ ++ ++ET NE+ V L TIH +KGL
Sbjct: 528 ---EGQ--QELADVTGSLTEFLEDVALATDMDKET---------NEDHVALMTIHLAKGL 573
Query: 863 EWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDAN 922
E+ V++ E P N T +EEERRL YVA+TRA K+ ++ Y
Sbjct: 574 EFPFVYIVGMEEDLFPSAMSMNTR-----TELEEERRLFYVALTRAEKQAYLTYTQSRYR 628
Query: 923 WQLL---QPSRFLKEI 935
W L +PSRF++EI
Sbjct: 629 WGKLVDAEPSRFIEEI 644
>gi|420930217|ref|ZP_15393493.1| ATP-dependent DNA helicase PcrA [Mycobacterium massiliense
1S-151-0930]
gi|420937853|ref|ZP_15401122.1| ATP-dependent DNA helicase PcrA [Mycobacterium massiliense
1S-152-0914]
gi|420940465|ref|ZP_15403728.1| ATP-dependent DNA helicase PcrA [Mycobacterium massiliense
1S-153-0915]
gi|420945526|ref|ZP_15408779.1| ATP-dependent DNA helicase PcrA [Mycobacterium massiliense
1S-154-0310]
gi|420950642|ref|ZP_15413888.1| ATP-dependent DNA helicase PcrA [Mycobacterium massiliense 2B-0626]
gi|420954811|ref|ZP_15418050.1| ATP-dependent DNA helicase PcrA [Mycobacterium massiliense 2B-0107]
gi|420960611|ref|ZP_15423840.1| ATP-dependent DNA helicase PcrA [Mycobacterium massiliense 2B-1231]
gi|420990792|ref|ZP_15453944.1| ATP-dependent DNA helicase PcrA [Mycobacterium massiliense 2B-0307]
gi|420996615|ref|ZP_15459755.1| ATP-dependent DNA helicase PcrA [Mycobacterium massiliense
2B-0912-R]
gi|421001044|ref|ZP_15464176.1| ATP-dependent DNA helicase PcrA [Mycobacterium massiliense
2B-0912-S]
gi|392139235|gb|EIU64967.1| ATP-dependent DNA helicase PcrA [Mycobacterium massiliense
1S-151-0930]
gi|392143368|gb|EIU69093.1| ATP-dependent DNA helicase PcrA [Mycobacterium massiliense
1S-152-0914]
gi|392155941|gb|EIU81646.1| ATP-dependent DNA helicase PcrA [Mycobacterium massiliense
1S-153-0915]
gi|392158734|gb|EIU84430.1| ATP-dependent DNA helicase PcrA [Mycobacterium massiliense
1S-154-0310]
gi|392160419|gb|EIU86110.1| ATP-dependent DNA helicase PcrA [Mycobacterium massiliense 2B-0626]
gi|392188859|gb|EIV14493.1| ATP-dependent DNA helicase PcrA [Mycobacterium massiliense
2B-0912-R]
gi|392189803|gb|EIV15435.1| ATP-dependent DNA helicase PcrA [Mycobacterium massiliense 2B-0307]
gi|392201563|gb|EIV27163.1| ATP-dependent DNA helicase PcrA [Mycobacterium massiliense
2B-0912-S]
gi|392255006|gb|EIV80469.1| ATP-dependent DNA helicase PcrA [Mycobacterium massiliense 2B-1231]
gi|392255339|gb|EIV80800.1| ATP-dependent DNA helicase PcrA [Mycobacterium massiliense 2B-0107]
Length = 784
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 222/747 (29%), Positives = 348/747 (46%), Gaps = 116/747 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN QQ AA PLLIVAG GSGK +SP ILA+TFT
Sbjct: 2 LDGLNPQQ-RAAVAHQGAPLLIVAGAGSGKTAVLTRRIAYLLAARDVSPGQILAITFTNK 60
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EMR+R+G IV + + +STFHS +++ R+ A L S F IY RR +
Sbjct: 61 AAAEMRERVGRIVAN-RVQSMWVSTFHSSCVRILRNQASLLPGLNSNFSIYDSDDSRRLL 119
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
+++ + L +KR S +L T ++S+ K N+
Sbjct: 120 ----QMIGRDMGLDIKRYSPRLLAT--------------------AISNLK----NELIS 151
Query: 409 DGMDVAK-ASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
VA +G E R +I A + Y LR+ NALD+ DLI +V +L FP+
Sbjct: 152 PEQAVANLTAGGQDGELRGDLPQIVADVYGEYQRRLRAANALDFDDLIGETVAVLQQFPQ 211
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLL-QILASH------------NRITIVGDDDQSI 514
+ Q Y+ ++ I+VDE+QDT+ QY L+ +++ +H + +VGD DQSI
Sbjct: 212 IAQFYRRKFRHILVDEYQDTNHAQYVLVRELVGAHVDHTVDPDGPEPAELCVVGDADQSI 271
Query: 515 FSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDN 574
++F GA I + F +D+ N K I L +NYRST+ I+ AA+S+I N R + K + TD+
Sbjct: 272 YAFRGATIRNIEEFERDYPNAKTILLEQNYRSTQNILSAANSVIAKNANRRE-KRLWTDS 330
Query: 575 SHGSKIIIKECHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQT 631
G I+ NE + +FI ID + + S +YG IA+ YR + + +
Sbjct: 331 GEGELIVGYVADNEHDEASFIAREIDGLFDR------SDANYGDIAVFYRTNNNSRSLEE 384
Query: 632 AFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV 690
F IP+ + GV FY +K +R I+A LR D RR+ ++ +
Sbjct: 385 IFIRTGIPYKVVGGVRFYERKEIRDIVAYLRVLTNPGDAVSLRRILNT-------PRRGI 437
Query: 691 IDHIDKISTIRK----CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKL---V 743
D + + F A D K++ RS+ + + ++M+ ++ +
Sbjct: 438 GDRAEACVAVHAETNGIGFGEALADAAAGKVAMLNSRSE----KAIAAFMDMLDQIRVTL 493
Query: 744 RRE-----PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVT 798
R + P I V+ +V N +Y LE + D +L DN L L++
Sbjct: 494 RTDDPGALPDIGDVVEAVLNHAGYRYELENSS----DPQELARLDN-----LNELVSVAH 544
Query: 799 DFLSTKFTAAKEEGNV---DQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTT 855
+F + A +V D+D L+AF++ +S + VT+ T
Sbjct: 545 EFSADAANAQAAGEDVPVDDEDVGAPPGSLEAFLERVS--LVADADELPESSAGVVTMMT 602
Query: 856 IHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFIL 915
+H +KGLE+ +VFV + P + V + EERRL YV +TRAR++L++
Sbjct: 603 LHTAKGLEFPVVFVTGWEDGMFPHMRALGDPV-----ELAEERRLAYVGITRARQRLYLS 657
Query: 916 YVMMDANW--QLLQP-SRFLKEIPHHL 939
+ ++W ++ P SRFL+EIP L
Sbjct: 658 RAKVRSSWGQPMMNPESRFLQEIPQEL 684
>gi|418250759|ref|ZP_12876971.1| putative ATP-dependent DNA helicase PcrA [Mycobacterium abscessus
47J26]
gi|353449384|gb|EHB97781.1| putative ATP-dependent DNA helicase PcrA [Mycobacterium abscessus
47J26]
Length = 806
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 222/747 (29%), Positives = 348/747 (46%), Gaps = 116/747 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN QQ AA PLLIVAG GSGK +SP ILA+TFT
Sbjct: 24 LDGLNPQQ-RAAVAHQGAPLLIVAGAGSGKTAVLTRRIAYLLAARDVSPGQILAITFTNK 82
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EMR+R+G IV + + +STFHS +++ R+ A L S F IY RR +
Sbjct: 83 AAAEMRERVGRIVAN-RVQSMWVSTFHSSCVRILRNQASLLPGLNSNFSIYDSDDSRRLL 141
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
+++ + L +KR S +L T ++S+ K N+
Sbjct: 142 ----QMIGRDMGLDIKRYSPRLLAT--------------------AISNLK----NELIS 173
Query: 409 DGMDVAK-ASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
VA +G E R +I A + Y LR+ NALD+ DLI +V +L FP+
Sbjct: 174 PEQAVANLTAGGQDGELRGDLPQIVADVYGEYQRRLRAANALDFDDLIGETVAVLQQFPQ 233
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLL-QILASH------------NRITIVGDDDQSI 514
+ Q Y+ ++ I+VDE+QDT+ QY L+ +++ +H + +VGD DQSI
Sbjct: 234 IAQFYRRKFRHILVDEYQDTNHAQYVLVRELVGAHVDHTVDPDGPEPAELCVVGDADQSI 293
Query: 515 FSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDN 574
++F GA I + F +D+ N K I L +NYRST+ I+ AA+S+I N R + K + TD+
Sbjct: 294 YAFRGATIRNIEEFERDYPNAKTILLEQNYRSTQNILSAANSVIAKNANRRE-KRLWTDS 352
Query: 575 SHGSKIIIKECHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQT 631
G I+ NE + +FI ID + + S +YG IA+ YR + + +
Sbjct: 353 GEGELIVGYVADNEHDEASFIAREIDGLFDR------SDANYGDIAVFYRTNNNSRSLEE 406
Query: 632 AFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV 690
F IP+ + GV FY +K +R I+A LR D RR+ ++ +
Sbjct: 407 IFIRTGIPYKVVGGVRFYERKEIRDIVAYLRVLTNPGDAVSLRRILNT-------PRRGI 459
Query: 691 IDHIDKISTIRK----CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKL---V 743
D + + F A D K++ RS+ + + ++M+ ++ +
Sbjct: 460 GDRAEACVAVHAETNGIGFGEALADAAAGKVAMLNSRSE----KAIAAFMDMLDQIRVTL 515
Query: 744 RRE-----PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVT 798
R + P I V+ +V N +Y LE + D +L DN L L++
Sbjct: 516 RTDDPGALPDIGDVVEAVLNHAGYRYELENSS----DPQELARLDN-----LNELVSVAH 566
Query: 799 DFLSTKFTAAKEEGNV---DQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTT 855
+F + A +V D+D L+AF++ +S + VT+ T
Sbjct: 567 EFSADAANAQAAGEDVPVDDEDVGAPPGSLEAFLERVS--LVADADELPESSAGVVTMMT 624
Query: 856 IHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFIL 915
+H +KGLE+ +VFV + P + V + EERRL YV +TRAR++L++
Sbjct: 625 LHTAKGLEFPVVFVTGWEDGMFPHMRALGDPV-----ELAEERRLAYVGITRARQRLYLS 679
Query: 916 YVMMDANW--QLLQP-SRFLKEIPHHL 939
+ ++W ++ P SRFL+EIP L
Sbjct: 680 RAKVRSSWGQPMMNPESRFLQEIPQEL 706
>gi|420863026|ref|ZP_15326419.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 4S-0303]
gi|420867423|ref|ZP_15330808.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus
4S-0726-RA]
gi|420871857|ref|ZP_15335237.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus
4S-0726-RB]
gi|420986046|ref|ZP_15449208.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 4S-0206]
gi|421039297|ref|ZP_15502308.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 4S-0116-R]
gi|421042209|ref|ZP_15505215.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 4S-0116-S]
gi|392072826|gb|EIT98666.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus
4S-0726-RA]
gi|392073546|gb|EIT99384.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 4S-0303]
gi|392076046|gb|EIU01879.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus
4S-0726-RB]
gi|392188426|gb|EIV14062.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 4S-0206]
gi|392227511|gb|EIV53025.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 4S-0116-R]
gi|392243213|gb|EIV68699.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 4S-0116-S]
Length = 785
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 222/747 (29%), Positives = 348/747 (46%), Gaps = 116/747 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN QQ AA PLLIVAG GSGK +SP ILA+TFT
Sbjct: 2 LDGLNPQQ-RAAVAHQGAPLLIVAGAGSGKTAVLTRRIAYLLAARDVSPGQILAITFTNK 60
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EMR+R+G IV + + +STFHS +++ R+ A L S F IY RR +
Sbjct: 61 AAAEMRERVGRIVAN-RVQSMWVSTFHSSCVRILRNQASLLPGLNSNFSIYDSDDSRRLL 119
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
+++ + L +KR S +L T ++S+ K N+
Sbjct: 120 ----QMIGRDMGLDIKRYSPRLLAT--------------------AISNLK----NELIS 151
Query: 409 DGMDVAK-ASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
VA +G E R +I A + Y LR+ NALD+ DLI +V +L FP+
Sbjct: 152 PEQAVANLTAGGQDGELRGDLPQIVADVYGEYQRRLRAANALDFDDLIGETVAVLQQFPQ 211
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLL-QILASH------------NRITIVGDDDQSI 514
+ Q Y+ ++ I+VDE+QDT+ QY L+ +++ +H + +VGD DQSI
Sbjct: 212 IAQFYRRKFRHILVDEYQDTNHAQYVLVRELVGAHVDRTVDPDGPEPAELCVVGDADQSI 271
Query: 515 FSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDN 574
++F GA I + F +D+ N K I L +NYRST+ I+ AA+S+I N R + K + TD+
Sbjct: 272 YAFRGATIRNIEEFERDYPNAKTILLEQNYRSTQNILSAANSVIAKNANRRE-KRLWTDS 330
Query: 575 SHGSKIIIKECHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQT 631
G I+ NE + +FI ID + + S +YG IA+ YR + + +
Sbjct: 331 GEGELIVGYVADNEHDEASFIAREIDGLFDR------SDANYGDIAVFYRTNNNSRSLEE 384
Query: 632 AFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV 690
F IP+ + GV FY +K +R I+A LR D RR+ ++ +
Sbjct: 385 IFIRTGIPYKVVGGVRFYERKEIRDIVAYLRVLTNPGDAVSLRRILNT-------PRRGI 437
Query: 691 IDHIDKISTIRK----CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKL---V 743
D + + F A D K++ RS+ + + ++M+ ++ +
Sbjct: 438 GDRAEACVAVHAETNGIGFGEALADAAAGKVAMLNSRSE----KAIAAFMDMLDQIRVTL 493
Query: 744 RRE-----PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVT 798
R + P I V+ +V N +Y LE + D +L DN L L++
Sbjct: 494 RTDDPGALPDIGDVVEAVLNHTGYRYELENSS----DPQELARLDN-----LNELVSVAH 544
Query: 799 DFLSTKFTAAKEEGNV---DQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTT 855
+F + A +V D+D L+AF++ +S + VT+ T
Sbjct: 545 EFSADAANAQAAGEDVPGDDEDVGAPPGSLEAFLERVS--LVADADELPESSAGVVTMMT 602
Query: 856 IHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFIL 915
+H +KGLE+ +VFV + P + V + EERRL YV +TRAR++L++
Sbjct: 603 LHTAKGLEFPVVFVTGWEDGMFPHMRALGDPV-----ELAEERRLAYVGITRARQRLYLS 657
Query: 916 YVMMDANW--QLLQP-SRFLKEIPHHL 939
+ ++W ++ P SRFL+EIP L
Sbjct: 658 RAKVRSSWGQPMMNPESRFLQEIPQEL 684
>gi|414583396|ref|ZP_11440536.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 5S-1215]
gi|420876291|ref|ZP_15339664.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 5S-0304]
gi|420881982|ref|ZP_15345346.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 5S-0421]
gi|420887853|ref|ZP_15351208.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 5S-0422]
gi|420894683|ref|ZP_15358023.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 5S-0708]
gi|420897991|ref|ZP_15361328.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 5S-0817]
gi|420903730|ref|ZP_15367052.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 5S-1212]
gi|420970662|ref|ZP_15433861.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 5S-0921]
gi|392091037|gb|EIU16848.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 5S-0421]
gi|392091870|gb|EIU17680.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 5S-0304]
gi|392093109|gb|EIU18908.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 5S-0422]
gi|392100717|gb|EIU26509.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 5S-0708]
gi|392109014|gb|EIU34793.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 5S-0817]
gi|392109570|gb|EIU35345.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 5S-1212]
gi|392118548|gb|EIU44316.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 5S-1215]
gi|392173424|gb|EIU99092.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 5S-0921]
Length = 784
Score = 258 bits (658), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 222/747 (29%), Positives = 348/747 (46%), Gaps = 116/747 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN QQ AA PLLIVAG GSGK +SP ILA+TFT
Sbjct: 2 LDGLNPQQ-RAAVAHQGAPLLIVAGAGSGKTAVLTRRIAYLLAARDVSPGQILAITFTNK 60
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EMR+R+G IV + + +STFHS +++ R+ A L S F IY RR +
Sbjct: 61 AAAEMRERVGRIVAN-RVQSMWVSTFHSSCVRILRNQASLLPGLNSNFSIYDSDDSRRLL 119
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
+++ + L +KR S +L T ++S+ K N+
Sbjct: 120 ----QMIGRDMGLDIKRYSPRLLAT--------------------AISNLK----NELIS 151
Query: 409 DGMDVAK-ASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
VA +G E R +I A + Y LR+ NALD+ DLI +V +L FP+
Sbjct: 152 PEQAVANLTAGGQDGELRGDLPQIVADVYGEYQRRLRAANALDFDDLIGETVAVLQQFPQ 211
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLL-QILASH------------NRITIVGDDDQSI 514
+ Q Y+ ++ I+VDE+QDT+ QY L+ +++ +H + +VGD DQSI
Sbjct: 212 IAQFYRRKFRHILVDEYQDTNHAQYVLVRELVGAHVDHTVDPDGPEPAELCVVGDADQSI 271
Query: 515 FSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDN 574
++F GA I + F +D+ N K I L +NYRST+ I+ AA+S+I N R + K + TD+
Sbjct: 272 YAFRGATIRNIEEFERDYPNAKTILLEQNYRSTQNILSAANSVIAKNANRRE-KRLWTDS 330
Query: 575 SHGSKIIIKECHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQT 631
G I+ NE + +FI ID + + S +YG IA+ YR + + +
Sbjct: 331 GEGELIVGYVADNEHDEASFIAREIDGLFDR------SDANYGDIAVFYRTNNNSRSLEE 384
Query: 632 AFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV 690
F IP+ + GV FY +K +R I+A LR D RR+ ++ +
Sbjct: 385 IFIRTGIPYKVVGGVRFYERKEIRDIVAYLRVLTNPGDAVSLRRILNT-------PRRGI 437
Query: 691 IDHIDKISTIRK----CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKL---V 743
D + + F A D K++ RS+ + + ++M+ ++ +
Sbjct: 438 GDRAEACVAVHAETNGIGFGEALADAAAGKVAMLNSRSE----KAIAAFMDMLDQIRVTL 493
Query: 744 RRE-----PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVT 798
R + P I V+ +V N +Y LE + D +L DN L L++
Sbjct: 494 RTDDPGALPDIGDVVEAVLNHTGYRYELENSS----DPQELARLDN-----LNELVSVAH 544
Query: 799 DFLSTKFTAAKEEGNV---DQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTT 855
+F + A +V D+D L+AF++ +S + VT+ T
Sbjct: 545 EFSADAANAQAAGEDVPVDDEDVGAPPGSLEAFLERVS--LVADADELPESSAGVVTMMT 602
Query: 856 IHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFIL 915
+H +KGLE+ +VFV + P + V + EERRL YV +TRAR++L++
Sbjct: 603 LHTAKGLEFPVVFVTGWEDGMFPHMRALGDPV-----ELAEERRLAYVGITRARQRLYLS 657
Query: 916 YVMMDANW--QLLQP-SRFLKEIPHHL 939
+ ++W ++ P SRFL+EIP L
Sbjct: 658 RAKVRSSWGQPMMNPESRFLQEIPQEL 684
>gi|422342745|ref|ZP_16423684.1| ATP-dependent DNA helicase PcrA [Treponema denticola F0402]
gi|325473361|gb|EGC76556.1| ATP-dependent DNA helicase PcrA [Treponema denticola F0402]
Length = 674
Score = 258 bits (658), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 225/747 (30%), Positives = 348/747 (46%), Gaps = 120/747 (16%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFT 287
+++ + LN +Q +A ++ P+LI+AG GSGK GI S ILA+TFT
Sbjct: 2 NEFTEGLNPEQFKAVTT-INGPVLIIAGAGSGKTRVITFRIAHMLDKGIPQSQILALTFT 60
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM++RI + GK + LT+STFH+F +++ RSH +K+ S F IY + +
Sbjct: 61 NKAAKEMQERIKELTGKKL-QNLTVSTFHAFGVKVLRSHIDKIGWRSNFSIYDETDRNQL 119
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
I E R L + S D L Y LF S+ K+ + K
Sbjct: 120 IKECGREL---------KFSADALDV-----YKVGILF----------SNIKMGR--KDW 153
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ D KA + + Y L+ NA+D+ DLI +K+ PE
Sbjct: 154 TNEHDSYKA------------------LYKEYQEGLKLYNAVDFDDLIMLPIKIFKEHPE 195
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDS 527
V EY++ ++ I+VDEFQDTS QY+ ++++A N I +VGDDDQSI+S+ GA +
Sbjct: 196 VLAEYRERYRYIMVDEFQDTSTQQYNFMKLIADKN-ICVVGDDDQSIYSWRGASFENIRN 254
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KDF EI+L +NYRST I+ AA+ +I HNV R ++K + ++ G I I N
Sbjct: 255 FEKDFPEMIEIKLEQNYRSTGTILAAANGVISHNVNR-KVKALWSEKDSGRPIEIFIPEN 313
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVA 646
E A+ FI D IL S Y +L R + + +F E IP+ + G +
Sbjct: 314 EAAEADFISDMIL---SLKQREGFKYSDFGVLIRANSLSRPLEESFLEVNIPYRMSGGTS 370
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFI 706
F+++K ++ +I+ LR DD R+ + K+ ++ + ++T CS
Sbjct: 371 FFQRKEIKDLISYLRVVANPDDDVNLLRIINT---PRRGIGKKTLETLSALATENSCSMR 427
Query: 707 SA--------ACDIFGAKISGTFKRSQLTQG-RKVLLTLEMISKLVRREPSISAVITSVA 757
+A D+ G I + ++L R LL+ + +++ VR+
Sbjct: 428 TAIRLLLENPPEDMRGKSIEDLKEFAELISAHRTQLLSGKGLAQKVRK------------ 475
Query: 758 NMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQD 817
LL+ A ++ L+ E Q+ + ++ FL + +D
Sbjct: 476 -------LLDDIAYNEY----LIAEYQKSEKAAQFKMMNIESFLHS----------MDDW 514
Query: 818 KKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
+ N + DY++ R T R + + V + TIH SKGLE+ +VF+A A + I
Sbjct: 515 ENNPDNWDASLYDYLN-RITLLTRDDTEEEKGEVNIMTIHSSKGLEFPVVFIAGAEDGLI 573
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMM---DANWQLLQPSRFLKE 934
P +V E +EEERRL YVA+TRA++KLFI PS FL E
Sbjct: 574 PHAR----SVEENDGDIEEERRLFYVAITRAQQKLFITSCRQRRKQGGITECAPSPFLDE 629
Query: 935 IPHHLREVQAEQSVQDQHENIPEGTAQ 961
IP L E E Q + E I + +Q
Sbjct: 630 IPADLVEYH-EPDAQAEEERIADIFSQ 655
>gi|420908538|ref|ZP_15371854.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 6G-0125-R]
gi|420914924|ref|ZP_15378229.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 6G-0125-S]
gi|420920720|ref|ZP_15384017.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 6G-0728-S]
gi|420925807|ref|ZP_15389094.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 6G-1108]
gi|420965351|ref|ZP_15428566.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 3A-0810-R]
gi|420976157|ref|ZP_15439341.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 6G-0212]
gi|420981534|ref|ZP_15444706.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 6G-0728-R]
gi|421006140|ref|ZP_15469256.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 3A-0119-R]
gi|421014003|ref|ZP_15477081.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 3A-0122-R]
gi|421016397|ref|ZP_15479466.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 3A-0122-S]
gi|421022127|ref|ZP_15485176.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 3A-0731]
gi|421027806|ref|ZP_15490844.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 3A-0930-R]
gi|421032802|ref|ZP_15495825.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 3A-0930-S]
gi|392122608|gb|EIU48370.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 6G-0125-S]
gi|392124998|gb|EIU50756.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 6G-0125-R]
gi|392130556|gb|EIU56302.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 6G-0728-S]
gi|392140332|gb|EIU66061.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 6G-1108]
gi|392171998|gb|EIU97670.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 6G-0212]
gi|392174936|gb|EIV00599.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 6G-0728-R]
gi|392200858|gb|EIV26463.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 3A-0122-R]
gi|392203610|gb|EIV29204.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 3A-0119-R]
gi|392216450|gb|EIV41994.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 3A-0731]
gi|392217019|gb|EIV42558.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 3A-0122-S]
gi|392231711|gb|EIV57217.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 3A-0930-S]
gi|392232423|gb|EIV57924.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 3A-0930-R]
gi|392257825|gb|EIV83273.1| ATP-dependent DNA helicase PcrA [Mycobacterium abscessus 3A-0810-R]
Length = 785
Score = 258 bits (658), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 222/747 (29%), Positives = 348/747 (46%), Gaps = 116/747 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN QQ AA PLLIVAG GSGK +SP ILA+TFT
Sbjct: 2 LDGLNPQQ-RAAVAHQGAPLLIVAGAGSGKTAVLTRRIAYLLAARDVSPGQILAITFTNK 60
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EMR+R+G IV + + +STFHS +++ R+ A L S F IY RR +
Sbjct: 61 AAAEMRERVGRIVAN-RVQSMWVSTFHSSCVRILRNQASLLPGLNSNFSIYDSDDSRRLL 119
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
+++ + L +KR S +L T ++S+ K N+
Sbjct: 120 ----QMIGRDMGLDIKRYSPRLLAT--------------------AISNLK----NELIS 151
Query: 409 DGMDVAK-ASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
VA +G E R +I A + Y LR+ NALD+ DLI +V +L FP+
Sbjct: 152 PEQAVANLTAGGQDGELRGDLPQIVADVYGEYQRRLRAANALDFDDLIGETVAVLQQFPQ 211
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLL-QILASH------------NRITIVGDDDQSI 514
+ Q Y+ ++ I+VDE+QDT+ QY L+ +++ +H + +VGD DQSI
Sbjct: 212 IAQFYRRKFRHILVDEYQDTNHAQYVLVRELVGAHVDRTVDPDGPEPAELCVVGDADQSI 271
Query: 515 FSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDN 574
++F GA I + F +D+ N K I L +NYRST+ I+ AA+S+I N R + K + TD+
Sbjct: 272 YAFRGATIRNIEEFERDYPNAKTILLEQNYRSTQNILSAANSVIAKNANRRE-KRLWTDS 330
Query: 575 SHGSKIIIKECHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQT 631
G I+ NE + +FI ID + + S +YG IA+ YR + + +
Sbjct: 331 GEGELIVGYVADNEHDEASFIAREIDGLFDR------SDANYGDIAVFYRTNNNSRSLEE 384
Query: 632 AFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV 690
F IP+ + GV FY +K +R I+A LR D RR+ ++ +
Sbjct: 385 IFIRTGIPYKVVGGVRFYERKEIRDIVAYLRVLTNPGDAVSLRRILNT-------PRRGI 437
Query: 691 IDHIDKISTIRK----CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKL---V 743
D + + F A D K++ RS+ + + ++M+ ++ +
Sbjct: 438 GDRAEACVAVHAETNGIGFGEALADAAAGKVAMLNSRSE----KAIAAFMDMLDQIRVTL 493
Query: 744 RRE-----PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVT 798
R + P I V+ +V N +Y LE + D +L DN L L++
Sbjct: 494 RTDDPGALPDIGDVVEAVLNHTGYRYELENSS----DPQELARLDN-----LNELVSVAH 544
Query: 799 DFLSTKFTAAKEEGNV---DQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTT 855
+F + A +V D+D L+AF++ +S + VT+ T
Sbjct: 545 EFSADAANAQAAGEDVPGDDEDVGAPPGSLEAFLERVS--LVADADELPESSAGVVTMMT 602
Query: 856 IHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFIL 915
+H +KGLE+ +VFV + P + V + EERRL YV +TRAR++L++
Sbjct: 603 LHTAKGLEFPVVFVTGWEDGMFPHMRALGDPV-----ELAEERRLAYVGITRARQRLYLS 657
Query: 916 YVMMDANW--QLLQP-SRFLKEIPHHL 939
+ ++W ++ P SRFL+EIP L
Sbjct: 658 RAKVRSSWGQPMMNPESRFLQEIPQEL 684
>gi|296127315|ref|YP_003634567.1| UvrD/REP helicase [Brachyspira murdochii DSM 12563]
gi|296019131|gb|ADG72368.1| UvrD/REP helicase [Brachyspira murdochii DSM 12563]
Length = 666
Score = 258 bits (658), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 213/722 (29%), Positives = 335/722 (46%), Gaps = 110/722 (15%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASE 293
LN++Q +A ++ PLL +AG GSGK G+ PS ILA+TFT AASE
Sbjct: 5 LNEEQRQA-VEHINGPLLALAGAGSGKTRVITERIAYLIKHGVLPSQILAVTFTNKAASE 63
Query: 294 MRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVR 353
MR+RI ++ K K+L +STFHSF +++ + EKL S F IY R
Sbjct: 64 MRERITKLL-KEKPKQLVVSTFHSFCVRVLKGDIEKLGYKSNFSIYSSSDSRT------- 115
Query: 354 LLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDV 413
L+ N +++ I + L D + + + + FK +E + D
Sbjct: 116 LIRN----ILREIKINTLNYDEN-------------LFAWYIDRFKNNLMKPYEVEPHDD 158
Query: 414 AKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQ 473
+ K + E Y L+ NA+D++DLI+ ++ L FPEV +YQ
Sbjct: 159 LEKQAKR--------------VYEVYQNYLKGYNAVDFNDLINLTIDLYIEFPEVLNKYQ 204
Query: 474 DSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDSFRKDF 532
+ ++ I+VDE+QDT+ QY L +LAS R I +VGDDDQSI++F GAD+S SF ++
Sbjct: 205 ERFRYIMVDEYQDTNFAQYKLTSLLASKYRNIAVVGDDDQSIYAFRGADVSNILSFENEY 264
Query: 533 LNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQC 592
+ K + LT+NYRST+ I+EAA S+I +N +R K V + G I C +E +
Sbjct: 265 PDAKIVTLTKNYRSTKAILEAAHSVISNNTQRKN-KEVVAEGDEGIPPTIMPCEDEREEA 323
Query: 593 AFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGV-AFYRKK 651
F+ D I+ ++ + +Y A+L+R ++F+ AFR R +P+ + G FY +K
Sbjct: 324 QFVADSIINYSI---SKRLNYEDFAVLFRMNAQSRLFEEAFRLRGLPYTVVGAFQFYERK 380
Query: 652 VVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACD 711
++ I+A L L + E D++S +R I+
Sbjct: 381 EIKDILAYLN------------------LFVNPE---------DEVSLLR---VINIPKR 410
Query: 712 IFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAV 771
GA + + G + TL + P A I ++ + L
Sbjct: 411 GIGAVAINNLNEASIKNGVSLYQTLLNYESMEDISPKAKAGIKDFLEIIEHYHNLFTVDK 470
Query: 772 VDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN-------- 823
D + KL N V+ Y ++ + TK AK+ NV+ G +
Sbjct: 471 NDIERPKLYENINKFLDVIAY-HNEILNSSDTKEQGAKKMENVESLMNGILEYEKSNKNA 529
Query: 824 VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
LK ++D I E + + + + L +IH +KGLE+ V++ + +P
Sbjct: 530 TLKNYLDRILLMSIEE-QNDDEEKKKGIMLMSIHAAKGLEFPYVYICGMEDGIMP---HH 585
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILY----VMMDANWQLLQPSRFLKEIPHHL 939
+ +E G +EEERRL YVAMTRA+K L + Y M + PS FL+E+ +L
Sbjct: 586 KSSSDEMG--IEEERRLCYVAMTRAKKHLTLTYCRSRTKMGKKVE-CTPSIFLEEMSENL 642
Query: 940 RE 941
E
Sbjct: 643 PE 644
>gi|381180958|ref|ZP_09889795.1| UvrD/REP helicase [Treponema saccharophilum DSM 2985]
gi|380767314|gb|EIC01316.1| UvrD/REP helicase [Treponema saccharophilum DSM 2985]
Length = 703
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 226/763 (29%), Positives = 338/763 (44%), Gaps = 157/763 (20%)
Query: 248 LNDQQLEAACGDMST--PLLIVAGPGSGK--------------GISPSNILAMTFTTAAA 291
LN +Q EA M+T LLI+AG GSGK GI S ILA+TFT AA
Sbjct: 5 LNPEQYEAV---MTTEGALLIIAGAGSGKTRVITFRIAHMLDKGIPQSAILALTFTNKAA 61
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEA 351
EM +RI S+ GK + LT+STFH+F +++ R ++L F IY + I E
Sbjct: 62 KEMEERIKSMTGKKL-QNLTVSTFHAFGVRVLRQDIDRLGWRQNFSIYDETDRNSLIKET 120
Query: 352 VRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
R L R S + L L+ + A++ S K +
Sbjct: 121 AREL---------RYSEESL-----------DLYKIGALI----SDIKTGR--------- 147
Query: 412 DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQE 471
K+ + + +R + D Y LR NA+D+ DLI+ ++L FP+V
Sbjct: 148 ---KSWNEENSVYRDLYD--------GYEEGLRLFNAVDFDDLITLPIRLFREFPDVLAR 196
Query: 472 YQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Y++ ++ I+VDEFQDTS QY +++LA N + +VGDDDQSI+S+ GAD ++F KD
Sbjct: 197 YKERYRYIMVDEFQDTSHQQYEFMRLLADKN-VAVVGDDDQSIYSWRGADYQNIENFEKD 255
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F N +EI+L +NYRST I+EAA+ +IQHN R + K + + N G I + NE +
Sbjct: 256 FPNVREIKLEQNYRSTGTILEAANGVIQHNTNRKE-KKLWSGNGEGKPIEVYYPENEAVE 314
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
FII+ I S + Y IL R + + AF IP+ + G +F+++
Sbjct: 315 ADFIIECI---HSLAISEKRKYSDFCILMRANTQSRPIEEAFLADDIPYTMSGGTSFFQR 371
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISA-- 708
K ++ +I+ LR DD R+ + + ++ +++ + + CS A
Sbjct: 372 KEIKDVISYLRVVSNHDDDVNLLRIINT---PRRGIGRATLEKLNETARMNSCSLWDAIQ 428
Query: 709 ------------ACDIFGA-------------KISGTFKRSQLTQGRKVLLTLEMISKLV 743
D+FG I G + + L +G K +L +SK +
Sbjct: 429 SVIRPGGEDEPVQTDLFGNILDEIHSDDYSDDAIEGMKELTSLIEGGKPMLGGHNLSKKI 488
Query: 744 RREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST 803
K +++ D+ L++E QY + ++ +
Sbjct: 489 -------------------KAFIDECRYFDY----LVSETPKSPKAAQYKMMNIESLIR- 524
Query: 804 KFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLE 863
+ K E + D N L I +S + E ++ V L TIH SKGLE
Sbjct: 525 --SVTKWENDPDNSDPTLYNYLNR-ITLLSRDDYE------EEDTGKVNLMTIHASKGLE 575
Query: 864 WDIVFVAKANETEIPLVHEFNGAVNEKG-TSVEEERRLLYVAMTRARKKLFILYVMMDAN 922
+ +VF+A A + +P AV E G +VEEERRL YVA+TRAR KL+I
Sbjct: 576 FPVVFIAGAEDDILPHAR----AVEEGGDAAVEEERRLFYVAITRARDKLYISSCRRRRK 631
Query: 923 WQLLQ-------------------PSRFLKEIPHHLREVQAEQ 946
Q PSRFL EIP L E Q
Sbjct: 632 HSFAQRQDEAEQTAKPADDGDECKPSRFLDEIPKQLVEYHEPQ 674
>gi|154506234|ref|ZP_02042972.1| hypothetical protein RUMGNA_03776 [Ruminococcus gnavus ATCC 29149]
gi|336434276|ref|ZP_08614073.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
2_1_58FAA]
gi|153793733|gb|EDN76153.1| ATP-dependent DNA helicase PcrA [Ruminococcus gnavus ATCC 29149]
gi|336013958|gb|EGN43823.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
2_1_58FAA]
Length = 744
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 223/751 (29%), Positives = 358/751 (47%), Gaps = 130/751 (17%)
Query: 247 SLNDQQLEAA-CGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAA 290
+LN+QQ EA C D PLLI+AG GSGK G++P NILA+TFT A
Sbjct: 6 TLNEQQREAVYCTD--GPLLILAGAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNKA 63
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIE 350
A EMR+R+ ++VG + + + +STFHS +++ R H ++L + F IY Q+ + +
Sbjct: 64 AGEMRERVDNLVGFGS-ESIWVSTFHSTCVRILRRHIDRLGYDTNFTIYDTDDQKTLMKD 122
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
+L+E + + +R + A N M+ S + L F
Sbjct: 123 VCKLVEIDTKVYKER------------NLLAAISSAKNEMI--SAQEYALNAQGDF---- 164
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
G E A + + Y + + NALD+ DL+ +V+L T P+V +
Sbjct: 165 -----------------GKEKIAKVYQEYEKQMHANNALDFDDLLVKTVQLFETQPDVLE 207
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDSFR 529
YQ+ ++ I+VDE+QDT+ +Q+ L+ +LA R + +VGDDDQSI+ F GA+I +F
Sbjct: 208 NYQERFRYIMVDEYQDTNTVQFQLVSLLAGKYRDLCVVGDDDQSIYKFRGANIKNILNFE 267
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
++F + I+L +NYRST I++AA+++I +NV R + K + TDN G KI +
Sbjct: 268 QEFPDATVIKLEQNYRSTGNILDAANAVISNNVGR-KDKQLWTDNGEGEKIKFCQFDTGY 326
Query: 590 AQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVAFY 648
+ +I D I NG SY AILYR ++F+ F + IP+ I GV FY
Sbjct: 327 DEAEYIADDIEREVRNG----ASYNDHAILYRTNAQSRLFEERFVAQNIPYKIVGGVNFY 382
Query: 649 RKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISA 708
++ ++ ++A L+T G DD RR+ KR I ++TI + +A
Sbjct: 383 ARREIKDVLAYLKTIDNGKDDLAVRRIINV--------PKRGI----GLTTINRIQESAA 430
Query: 709 ACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQ 768
+ I G + LL L++I + R + + + K + E
Sbjct: 431 SRGI------GFY---------DALLGLDLIPGVARGAAKLEGFVALIEYF---KGVAET 472
Query: 769 RAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKF---------TAAKEEGNVDQDKK 819
++ D LL E D ++ L A+ + T+ A EE +DQD+K
Sbjct: 473 LSLSD-----LLQEVIDKTGYIESLEAEGKEESETRIENIDELRSKVAVYEESCLDQDEK 527
Query: 820 GCIN------VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
++ L A ID + E ++ V L T+H +KGLE+ V++A
Sbjct: 528 PTLSGFLEEVALVADIDSLDEE------------QDYVVLMTLHSAKGLEFPHVYLAGME 575
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI---LYVMMDANWQLLQPSR 930
+ P + ++ +EEERRL YV +TRA +KL + + M+ Q + SR
Sbjct: 576 DGLFP---SYMTVTSDDREDMEEERRLCYVGITRAEQKLTMTSAMRRMVRGETQYNKVSR 632
Query: 931 FLKEIPHHLREVQAEQS-VQDQHENIPEGTA 960
F+KEIP L + S + ++ + IP+ TA
Sbjct: 633 FMKEIPLELLDNGNRSSKMFEERQEIPKQTA 663
>gi|169628149|ref|YP_001701798.1| putative ATP-dependent DNA helicase PcrA [Mycobacterium abscessus
ATCC 19977]
gi|169240116|emb|CAM61144.1| Putative ATP-dependent DNA helicase PcrA [Mycobacterium abscessus]
Length = 807
Score = 257 bits (656), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 221/745 (29%), Positives = 347/745 (46%), Gaps = 116/745 (15%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAA 291
LN QQ AA PLLIVAG GSGK +SP ILA+TFT AA
Sbjct: 26 GLNPQQ-RAAVAHQGAPLLIVAGAGSGKTAVLTRRIAYLLAARDVSPGQILAITFTNKAA 84
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAIIE 350
+EMR+R+G IV + + +STFHS +++ R+ A L S F IY RR +
Sbjct: 85 AEMRERVGRIVAN-RVQSMWVSTFHSSCVRILRNQASLLPGLNSNFSIYDSDDSRRLL-- 141
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
+++ + L +KR S +L T ++S+ K N+
Sbjct: 142 --QMIGRDMGLDIKRYSPRLLAT--------------------AISNLK----NELISPE 175
Query: 411 MDVAK-ASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
VA +G E R +I A + Y LR+ NALD+ DLI +V +L FP++
Sbjct: 176 QAVANLTAGGQDGELRGDLPQIVADVYGEYQRRLRAANALDFDDLIGETVAVLQQFPQIA 235
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLL-QILASH------------NRITIVGDDDQSIFS 516
Q Y+ ++ I+VDE+QDT+ QY L+ +++ +H + +VGD DQSI++
Sbjct: 236 QFYRRKFRHILVDEYQDTNHAQYVLVRELVGAHVDRTVDPDGPEPAELCVVGDADQSIYA 295
Query: 517 FNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSH 576
F GA I + F +D+ N K I L +NYRST+ I+ AA+S+I N R + K + TD+
Sbjct: 296 FRGATIRNIEEFERDYPNAKTILLEQNYRSTQNILSAANSVIAKNANRRE-KRLWTDSGE 354
Query: 577 GSKIIIKECHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
G I+ NE + +FI ID + + S +YG IA+ YR + + + F
Sbjct: 355 GELIVGYVADNEHDEASFIAREIDGLFDR------SDANYGDIAVFYRTNNNSRSLEEIF 408
Query: 634 RERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID 692
IP+ + GV FY +K +R I+A LR D RR+ ++ + D
Sbjct: 409 IRTGIPYKVVGGVRFYERKEIRDIVAYLRVLTNPGDAVSLRRILNT-------PRRGIGD 461
Query: 693 HIDKISTIRK----CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKL---VRR 745
+ + F A D K++ RS+ + + ++M+ ++ +R
Sbjct: 462 RAEACVAVHAETNGIGFGEALADAAAGKVAMLNSRSE----KAIAAFMDMLDQIRVTLRT 517
Query: 746 E-----PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDF 800
+ P I V+ +V N +Y LE + D +L DN L L++ +F
Sbjct: 518 DDPGALPDIGDVVEAVLNHTGYRYELENSS----DPQELARLDN-----LNELVSVAHEF 568
Query: 801 LSTKFTAAKEEGNV---DQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIH 857
+ A +V D+D L+AF++ +S + VT+ T+H
Sbjct: 569 SADAANAQAAGEDVPGDDEDVGAPPGSLEAFLERVS--LVADADELPESSAGVVTMMTLH 626
Query: 858 QSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV 917
+KGLE+ +VFV + P + V + EERRL YV +TRAR++L++
Sbjct: 627 TAKGLEFPVVFVTGWEDGMFPHMRALGDPV-----ELAEERRLAYVGITRARQRLYLSRA 681
Query: 918 MMDANW--QLLQP-SRFLKEIPHHL 939
+ ++W ++ P SRFL+EIP L
Sbjct: 682 KVRSSWGQPMMNPESRFLQEIPQEL 706
>gi|305681998|ref|ZP_07404802.1| putative ATP-dependent DNA helicase PcrA [Corynebacterium
matruchotii ATCC 14266]
gi|305658471|gb|EFM47974.1| putative ATP-dependent DNA helicase PcrA [Corynebacterium
matruchotii ATCC 14266]
Length = 898
Score = 257 bits (656), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 216/742 (29%), Positives = 339/742 (45%), Gaps = 109/742 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN QQ AA +PLLIVAG GSGK G++P ILA+TFT
Sbjct: 96 IADLNPQQ-RAAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLLRMRGVAPGQILAITFTNK 154
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EMRDR+ +VG TA + ++TFHS +++ R A L + F IY +R
Sbjct: 155 AAAEMRDRVIDLVGP-TATRMWVATFHSACVRILREQAHLLPGLNTNFTIYDADDSKR-- 211
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
++ I+ D+ +NA F K E
Sbjct: 212 -------------LLGMIAKDL---------------QINAQKFPPRLLAAAISALKTEL 243
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D A A R D A + Y LR+ NALD+ DLI +V++ +T PE+
Sbjct: 244 TDPDAASDEA---AATRNPFDRTIAEVYTEYQRRLRAANALDFDDLIGETVRVFTTHPEI 300
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS----HNRITIVGDDDQSIFSFNGADISG 524
Y+ ++ +++DE+QDT+ QY L+ L + +++VGD DQSI++F GA I
Sbjct: 301 AAYYRKRFRHVLIDEYQDTNHAQYVLISTLVGTGPDASELSVVGDSDQSIYAFRGATIRN 360
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+ F +D+ + I L +NYRST+ I+ AA+++I HN R + K + TD+ G+KI
Sbjct: 361 IEEFERDYPQARTILLEQNYRSTQNILSAANAVISHNHGRRE-KKLWTDHGAGAKITGYV 419
Query: 585 CHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN 641
NE + FI ID + + YG IA++YR S + + F IP+
Sbjct: 420 ADNEHDEARFIATEIDALFDMG-------VGYGDIAVMYRTNNSSRAIEEVFIRTGIPYK 472
Query: 642 -IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTI 700
+ G FY +K +R +IA LR D+ RR+ + R I ++ +
Sbjct: 473 VVGGTRFYERKEIRDLIAYLRVLDNPTDEISLRRIINT---PRRGIGDRAIATVNLYAEN 529
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKL----------VRREPSIS 750
SF A D K++ R++ + LE++ L + P I
Sbjct: 530 FGMSFADALVDAAHGKVTALGTRAK----NAIAAFLELMDGLRVDAAEATNAITGLPDIG 585
Query: 751 AVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKE 810
V++ + + K LE A D G L+ N+L SV + ++ + ++ A
Sbjct: 586 VVVSRILDATGYKAELE--ASTDPQDGARLDNLNELVSVAREFSSEAANLMAYAAMGAGT 643
Query: 811 ----EGN------VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSK 860
EGN V + + G I+ + +++ + D+ N VTL T+H +K
Sbjct: 644 GAGVEGNDPAEPMVGEPQPGSIHAFLEKVSLVADSD-----QLPDDSTNVVTLMTLHTAK 698
Query: 861 GLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD 920
GLE+ +VF+ + + P + G E + EERRL YV +TRAR+ L++ M+
Sbjct: 699 GLEFPVVFLIGWEDGQFPHLRAL-GDPQE----LAEERRLAYVGITRARETLYLTRAMLR 753
Query: 921 ANW--QLLQP-SRFLKEIPHHL 939
A+W + P SRFL++IP L
Sbjct: 754 ASWGNAVANPASRFLEDIPEKL 775
>gi|419710517|ref|ZP_14237982.1| putative ATP-dependent DNA helicase PcrA [Mycobacterium abscessus
M93]
gi|382940516|gb|EIC64839.1| putative ATP-dependent DNA helicase PcrA [Mycobacterium abscessus
M93]
Length = 807
Score = 257 bits (656), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 221/745 (29%), Positives = 346/745 (46%), Gaps = 116/745 (15%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAA 291
LN QQ AA PLLIVAG GSGK +SP ILA+TFT AA
Sbjct: 26 GLNPQQ-RAAVAHQGAPLLIVAGAGSGKTAVLTRRIAYLLAARDVSPGQILAITFTNKAA 84
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAIIE 350
+EMR+R+G IV + + +STFHS +++ R+ A L S F IY RR +
Sbjct: 85 AEMRERVGRIVAN-RVQSMWVSTFHSSCVRILRNQASLLPGLNSNFSIYDSDDSRRLL-- 141
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
+++ + L +KR S +L T ++S+ K N+
Sbjct: 142 --QMIGRDMGLDIKRYSPRLLAT--------------------AISNLK----NELISPE 175
Query: 411 MDVAK-ASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
VA +G E R +I A + Y LR+ NALD+ DLI +V +L FP++
Sbjct: 176 QAVANLTAGGQDGELRGDLPQIVADVYGEYQRRLRAANALDFDDLIGETVAVLQQFPQIA 235
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLL-QILASH------------NRITIVGDDDQSIFS 516
Q Y+ ++ I+VDE+QDT+ QY L+ +++ +H + +VGD DQSI++
Sbjct: 236 QFYRRKFRHILVDEYQDTNHAQYVLVRELVGAHVDRTVDPDGPEPAELCVVGDADQSIYA 295
Query: 517 FNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSH 576
F GA I + F +D+ N K I L +NYRST+ I+ AA+S+I N R + K + TD+
Sbjct: 296 FRGATIRNIEEFERDYPNAKTILLEQNYRSTQNILSAANSVIAKNANRRE-KRLWTDSGE 354
Query: 577 GSKIIIKECHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
G I+ NE + +FI ID + + S +YG IA+ YR + + + F
Sbjct: 355 GELIVGYVADNEHDEASFIAREIDGLFDR------SDANYGDIAVFYRTNNNSRSLEEIF 408
Query: 634 RERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID 692
IP+ + GV FY +K +R I+A LR D RR+ ++ + D
Sbjct: 409 IRTGIPYKVVGGVRFYERKEIRDIVAYLRVLTNPGDAVSLRRILNT-------PRRGIGD 461
Query: 693 HIDKISTIRK----CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKL---VRR 745
+ + F A D K++ RS+ + + ++M+ ++ +R
Sbjct: 462 RAEACVAVHAETNGIGFGEALADAAAGKVAMLNSRSE----KAIAAFMDMLDQIRVTLRT 517
Query: 746 E-----PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDF 800
+ P I V+ +V N +Y LE + D +L DN L L++ +F
Sbjct: 518 DDPGALPDIGDVVEAVLNHTGYRYELENSS----DPQELARLDN-----LNELVSVAHEF 568
Query: 801 LSTKFTAAKEEGNV---DQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIH 857
+ A +V D+D L+AF++ +S VT+ T+H
Sbjct: 569 SADAANAQAAGEDVPGDDEDVGAPPGSLEAFLERVS--LVADADELPESGAGVVTMMTLH 626
Query: 858 QSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV 917
+KGLE+ +VFV + P + V + EERRL YV +TRAR++L++
Sbjct: 627 TAKGLEFPVVFVTGWEDGMFPHMRALGDPV-----ELAEERRLAYVGITRARQRLYLSRA 681
Query: 918 MMDANW--QLLQP-SRFLKEIPHHL 939
+ ++W ++ P SRFL+EIP L
Sbjct: 682 KVRSSWGQPMMNPESRFLQEIPQEL 706
>gi|379010182|ref|YP_005267994.1| ATP-dependent DNA helicase PcrA1 [Acetobacterium woodii DSM 1030]
gi|375300971|gb|AFA47105.1| ATP-dependent DNA helicase PcrA1 [Acetobacterium woodii DSM 1030]
Length = 735
Score = 257 bits (656), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 208/716 (29%), Positives = 346/716 (48%), Gaps = 109/716 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKGIS---------------PSNILAMTFTTA 289
L LN +Q EAA PLLI+AG GSGK + PS ILA+TFT
Sbjct: 4 LDGLNSRQREAA-ETTEGPLLILAGAGSGKTRTIIHRIAHIIETERAWPSQILAITFTNK 62
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+RI + +K + ++TFH+ ++ R+H++ L F+IY Q+R
Sbjct: 63 AAGEMRERIAKM-NIQDSKRIWMATFHAMCARIMRTHSQWLGYDDNFVIYDTDDQKRLYK 121
Query: 350 EAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
++ L N+K + + ++ T +F S ++
Sbjct: 122 SLIKELGLNDKYFTSQFLGGEISTAKNNF---------------ISPEAY---------- 156
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
S + +FRK +++G + Y L++ NA+D+ DLI ++ L FPE+
Sbjct: 157 --------SKENSGDFRK--EKVGI-YYKRYQESLKANNAMDFDDLIYNTLVLFKGFPEI 205
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDS 527
++YQ+ +K I+VDE+QDT+ QY L+ +LA+ N+ I + GDDDQSI+ + GADIS
Sbjct: 206 LEQYQNRFKYIMVDEYQDTNHSQYELVNMLAAKNKNICVCGDDDQSIYGWRGADISNILD 265
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KD+ N K ++L NYRST+ I++ A+ +I N R + K + T+N+ KI+I +
Sbjct: 266 FEKDYTNAKVVKLEENYRSTQTILDCANGVIVRNTGRKE-KALWTNNAGDEKIMISSFNQ 324
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
+ F++D+I ++ + G YG AILYR ++F+ A +P+ I G
Sbjct: 325 GYDEARFVVDEINDNIAKGNG---IYGDFAILYRTNAQSRLFEEALMRAGLPYQLIGGTG 381
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFI 706
FY + ++ IA L D+ + R+ + ++ I+ I + + + S +
Sbjct: 382 FYSRVEIKDTIAYLNVLSNPKDNMGFMRIVN---VPKRGIGSATIEKIAEYANFKSFSLM 438
Query: 707 SAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI--TSVANMVPQKY 764
A + ++++ +++ TLE I + I+AVI T NM+
Sbjct: 439 EAFHHVEEIPELSPSVKNKVRAFSELMKTLEKIQETANLSELIAAVIEKTGYLNML---- 494
Query: 765 LLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINV 824
+ GK+ ++ L + LQ LL+ DF E+ + DQ
Sbjct: 495 ----------ETGKMDKGESRLEN-LQELLSSAADF---------EKNSDDQS------- 527
Query: 825 LKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
L A+++ ++ ET+ + +E V L T+H +KGLE+ IVF+ E P
Sbjct: 528 LSAYLETVALSSETDKY----DGDEGKVLLMTLHNAKGLEFPIVFIPGLEEGIFP----- 578
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+G + +EEERR+ YV +TRA K+L++ + + Q+ PSRFLKE+P
Sbjct: 579 HGRALDSPEDIEEERRICYVGITRAMKRLYLSWAAERTLYGRRQIQSPSRFLKEMP 634
>gi|54026969|ref|YP_121211.1| ATP-dependent DNA helicase [Nocardia farcinica IFM 10152]
gi|54018477|dbj|BAD59847.1| putative ATP-dependent DNA helicase [Nocardia farcinica IFM 10152]
Length = 842
Score = 256 bits (655), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 223/757 (29%), Positives = 353/757 (46%), Gaps = 125/757 (16%)
Query: 239 DEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILA 283
++ + L LN QQ AA +PLLIVAG GSGK +SP ILA
Sbjct: 45 EQVERLLDGLNPQQ-RAAVVHAGSPLLIVAGAGSGKTAVLTRRIAYLLAARDVSPGQILA 103
Query: 284 MTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHG 342
+TFT AA+EMR+R+ +VG A + +STFHS +++ R A L S F IY
Sbjct: 104 ITFTNKAAAEMRERVTGLVGPRAAT-MWVSTFHSSCVRILRMQAALLPGLNSNFSIYDAD 162
Query: 343 QQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQ 402
RR + R L+ + K+ S +L T ++S+ K +
Sbjct: 163 DSRRLLTMISRDLD----IDTKKYSARLLVT--------------------AISNLK-NE 197
Query: 403 YNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLL 462
E+ D + P + A + Y LR+ NALD+ DLI +V LL
Sbjct: 198 LIGPEQASADAESDESELPG--------LVARVYTEYQRRLRAANALDFDDLIGETVALL 249
Query: 463 STFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-------------NRITIVGD 509
P+V + Y+ ++ ++VDE+QDT+ QY L++ L H + + +VGD
Sbjct: 250 QNHPQVAEYYRRRFRHVLVDEYQDTNHAQYVLVRELVGHHSAADDTEDAVPPSELCVVGD 309
Query: 510 DDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKN 569
DQSI++F GA I + F +DF + + I L +NYRST+ I+ AA+++I N R + K
Sbjct: 310 ADQSIYAFRGATIRNIEEFERDFPDAETILLEQNYRSTQNILSAANAVIARNEGRRE-KR 368
Query: 570 VQTDNSHGSKIIIKECHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSG 626
+ TD+ G I+ NE + +F+ ID++++ +YG +A+ YR +
Sbjct: 369 LWTDSGEGDLIVGYVADNEHDEASFVAREIDRLVDQGE------ANYGDVAVFYRTNNNS 422
Query: 627 KVFQTAFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDG-PYRRVFKAFLLLEK 684
+ + F +P+ + GV FY +K VR I+A LR L DD RR+
Sbjct: 423 RALEEIFIRMGLPYKVVGGVRFYERKEVRDIVAYLR-VLENPDDAVSLRRILNT------ 475
Query: 685 EEKKRVIDHIDKISTI----RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMIS 740
++ + D + + R F +A D K++ R+Q R + L+++
Sbjct: 476 -PRRGIGDRAEACVAVHAEQRGIGFAAALRDAAEGKVALLNTRAQ----RAIAGFLDLLE 530
Query: 741 KLVRREPSISAVITSVANMVPQ-----KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLA 795
++ A V N+V Y E A D G L+ N+L SV +
Sbjct: 531 EIRAAGEQADADFPDVGNVVEAVLDRTGYRAELEASDDPQDGARLDNLNELVSVAR---- 586
Query: 796 DVTDFLSTKF---TAAKEEGNVDQDKKGCINV--LKAFIDYIS-ERETEHFRTQRHDNEN 849
+F S + AA+EEG + + +G + L AF++ +S +T+ +
Sbjct: 587 ---EFSSEAYNNAVAAREEGILPEQAEGEPDPGSLAAFLERVSLVADTDQIPDE---GAG 640
Query: 850 SVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRAR 909
VT+ T+H +KGLE+ +VFV + + P + T + EERRL YV +TRAR
Sbjct: 641 VVTMMTLHTAKGLEFPVVFVTGWEDGQFPHMRALGDP-----TELAEERRLAYVGITRAR 695
Query: 910 KKLFILYVMMDANWQLLQP-----SRFLKEIPHHLRE 941
++L++ ++ + W QP SRFL+EIP HL E
Sbjct: 696 QRLYLTRAVVRSGWG--QPVSNPESRFLQEIPDHLIE 730
>gi|421047897|ref|ZP_15510893.1| ATP-dependent DNA helicase PcrA [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|392242062|gb|EIV67549.1| ATP-dependent DNA helicase PcrA [Mycobacterium massiliense CCUG
48898]
Length = 785
Score = 256 bits (655), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 220/746 (29%), Positives = 348/746 (46%), Gaps = 114/746 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN QQ AA PLLIVAG GSGK +SP ILA+TFT
Sbjct: 2 LDGLNPQQ-RAAVAHQGAPLLIVAGAGSGKTAVLTRRIAYLLAARDVSPGQILAITFTNK 60
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EMR+R+G IV + + +STFHS +++ R+ A L S F IY RR +
Sbjct: 61 AAAEMRERVGRIVAN-RVQSMWVSTFHSSCVRILRNQASLLPGLNSNFSIYDSDDSRRLL 119
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
+++ + L +KR S +L T A + N ++ ++ L
Sbjct: 120 ----QMIGRDMGLDIKRYSPRLLAT--------AISNLKNELISPEQAAANLT------- 160
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
+G E R +I A + Y LR+ NALD+ DLI +V +L FP++
Sbjct: 161 --------AGGQEGELRGDLPQIVADVYGEYQRRLRAANALDFDDLIGETVAVLQQFPQI 212
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLL-QILASH------------NRITIVGDDDQSIF 515
Q Y+ ++ I+VDE+QDT+ QY L+ +++ +H + +VGD DQSI+
Sbjct: 213 AQFYRRKFRHILVDEYQDTNHAQYVLVRELVGAHVDRTVDPDGPEPAELCVVGDADQSIY 272
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I + F +D+ N K I L +NYRST+ I+ AA+S+I N R + K + TD+
Sbjct: 273 AFRGATIRNIEEFERDYPNAKTILLEQNYRSTQNILSAANSVIAKNANRRE-KRLWTDSG 331
Query: 576 HGSKIIIKECHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTA 632
G I+ NE + +FI ID + + +YG +A+ YR + + +
Sbjct: 332 EGELIVGYVADNEHDEASFIAREIDGLFDRGD------ANYGDVAVFYRTNNNSRSLEEI 385
Query: 633 FRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI 691
F IP+ + GV FY +K +R I+A LR D RR+ ++ +
Sbjct: 386 FIRTGIPYKVVGGVRFYERKEIRDIVAYLRVLTNPGDAVSLRRILNT-------PRRGIG 438
Query: 692 DHIDKISTIRK----CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKL---VR 744
D + + F A D K++ RS+ + + ++M+ ++ +R
Sbjct: 439 DRAEACVAVHAETNGIGFGEALADAAAGKVAMLNSRSE----KAIAAFMDMLDQIRVTLR 494
Query: 745 RE-----PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTD 799
+ P I V+ +V N +Y LE + D +L DN L L++ +
Sbjct: 495 TDDPGALPDIGDVVEAVLNHTGYRYELENSS----DPQELARLDN-----LNELVSVAHE 545
Query: 800 F--LSTKFTAAKEEGNVDQDKKGC-INVLKAFIDYISERETEHFRTQRHDNENSVTLTTI 856
F + AA E+ VD + G L+AF++ +S + VT+ T+
Sbjct: 546 FSADAANAQAAGEDVPVDGEDVGAPPGSLEAFLERVS--LVADADELPESSAGVVTMMTL 603
Query: 857 HQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILY 916
H +KGLE+ +VFV + P + V + EERRL YV +TRAR++L++
Sbjct: 604 HTAKGLEFPVVFVTGWEDGMFPHMRALGDPV-----ELAEERRLAYVGITRARQRLYLSR 658
Query: 917 VMMDANW--QLLQP-SRFLKEIPHHL 939
+ ++W ++ P SRFL+EIP L
Sbjct: 659 AKVRSSWGQPMMNPESRFLQEIPQEL 684
>gi|443674277|ref|ZP_21139313.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus sp. AW25M09]
gi|443413194|emb|CCQ17652.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus sp. AW25M09]
Length = 827
Score = 256 bits (654), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 221/747 (29%), Positives = 348/747 (46%), Gaps = 110/747 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LN QQ EA +PLLIVAG GSGK G+SP +LA+TFT
Sbjct: 20 LEGLNPQQREAVV-HTGSPLLIVAGAGSGKTAVLTRRIAYLLAERGVSPGQVLAITFTNK 78
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EMR+R+ +VG A + +STFHS +++ R+ A L S F IY RR +
Sbjct: 79 AAAEMRERVAGLVGP-RANAMWVSTFHSSCVRILRAQAALLPGLNSNFSIYDADDSRRLL 137
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFK--LCQYNKF 406
++ + + K+ S +L+TD +S+ K L +K
Sbjct: 138 T----MISKDLQIDTKKFSARLLSTD--------------------ISNLKNELIVPDKA 173
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
D A G PAE ++ A I Y LR+ NA+D+ DLI +V +L FP
Sbjct: 174 AED------ADGD-PAELPRLV----AKIYGIYQQRLRAANAMDFDDLIGETVGILQAFP 222
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-------------NRITIVGDDDQS 513
+V Q Y+ ++ ++VDE+QDT+ QY L++ L + +VGD DQS
Sbjct: 223 QVAQYYRRRFRHVLVDEYQDTNHAQYMLVRELVGTPDADGALEGTVPPGELCVVGDADQS 282
Query: 514 IFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTD 573
I++F GA I + F +D+ + + I L +NYRST+ I+ AA+++I N+ R + K + TD
Sbjct: 283 IYAFRGATIRNIEEFERDYPDARTILLEQNYRSTQNILSAANAVISRNIGRRE-KKLWTD 341
Query: 574 NSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
G I+ NE + +F+ +I G + +A+ YR S + + F
Sbjct: 342 TGEGELIVGYVADNEHDEASFVASEIDRLVDGGD---VRFDEVAVFYRTNNSSRALEEIF 398
Query: 634 RERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID 692
+P+ + GV FY +K VR ++A LR D RR+ ++ + D
Sbjct: 399 IRLGLPYKVVGGVRFYERKEVRDLVAYLRVLSNEDDTVSMRRILNT-------PRRGIGD 451
Query: 693 HIDKISTI----RKCSFISAACDIFGAKISGTFKRSQ--LTQGRKVLLTLEMISKLVRRE 746
+ + R SF A D K++ R Q + Q ++L L + +
Sbjct: 452 RAEACVAVHAEQRDISFSRALRDAADGKVALLNSRQQKLIAQFMELLDELRAVLTATDGD 511
Query: 747 PSISAVITSVANMVPQK--YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTK 804
+ A I V V + Y E A D G L+ N+L SV + ++ + +
Sbjct: 512 GNDIADIGDVVEAVLDRTGYRAELEASSDPQDGARLDNLNELVSVAREFTSEARNQAAVA 571
Query: 805 FTAAKEEGNVDQDKKGCIN------VLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIH 857
A + + D++G ++ L AF++ +S +T+ VTL T+H
Sbjct: 572 QEALETGDDETGDEQGGVDGLAEPGSLAAFLERVSLVADTDQI---PDSGTGVVTLMTLH 628
Query: 858 QSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV 917
+KGLE+ +VFV + + P + G NE + EERRL YV +TRAR++L++
Sbjct: 629 TAKGLEFPVVFVTGWEDGQFPHMRAL-GDPNE----LSEERRLAYVGITRARQRLYLTRA 683
Query: 918 MMDANWQLLQP-----SRFLKEIPHHL 939
+M + W QP SRFL+E+P HL
Sbjct: 684 IMRSAWG--QPIANPESRFLQEVPQHL 708
>gi|418982972|ref|ZP_13530677.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1242]
gi|377702824|gb|EHT27142.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1242]
Length = 730
Score = 256 bits (654), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 218/726 (30%), Positives = 345/726 (47%), Gaps = 119/726 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +N +Q EA PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I F+ C +
Sbjct: 123 D---VLKNENI---------------------------------DSKKFEPCMF----IG 142
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+ K KTPA+ +K ++ A + Y L ALD+ DLI ++ L
Sbjct: 143 AISNLKNELKTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV + YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 203 PEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF KD+ I L +NYRST+ I+ AA+ +I++N +R + K + T N++G KI E
Sbjct: 263 ILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + F+I +I++H NG Y +AILYR +V + F + +P+ +
Sbjct: 322 AMTERDEAEFVIREIMKHQRNGK----KYQDMAILYRTNAQSRVLEETFMKSNMPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR + ++K+
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINV--------PKRGVGPSSVEKVQNYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + A G K+ +TQ + L E+I L++ + + I + + V
Sbjct: 430 LQNNISMFDALGEADFIGLSKK--VTQ--ECLNFYELIQSLIKEQEFLE--IHEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
QK + +L +N L S + L ++ +F+S E N +++
Sbjct: 484 QKSGYRE----------MLERENTLES--RSRLENIDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E +T EN VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEADT----------ENGVTLMTMHSAKGLEFPIVFIMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGT-SVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
+ A+ +G ++EERR+ YVA+TRA + L+I + M+ Q PSRFLKEI
Sbjct: 579 IR----AIKSEGDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEI 634
Query: 936 PHHLRE 941
P L E
Sbjct: 635 PESLLE 640
>gi|50843216|ref|YP_056443.1| ATP-dependent DNA helicase [Propionibacterium acnes KPA171202]
gi|335053051|ref|ZP_08545905.1| ATP-dependent DNA helicase PcrA [Propionibacterium sp. 434-HC2]
gi|422456795|ref|ZP_16533458.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL030PA1]
gi|50840818|gb|AAT83485.1| ATP-dependent DNA helicase [Propionibacterium acnes KPA171202]
gi|315106181|gb|EFT78157.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL030PA1]
gi|333768174|gb|EGL45376.1| ATP-dependent DNA helicase PcrA [Propionibacterium sp. 434-HC2]
Length = 810
Score = 256 bits (654), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 213/734 (29%), Positives = 341/734 (46%), Gaps = 102/734 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN+ Q EA +P+L+VAG GSGK G+ P +ILA+TFT
Sbjct: 42 LADLNEPQREAVL-HAGSPVLVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTNK 100
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM+ R+ +VG AK + +STFHS ++++ R+ ++L + F IY +R I
Sbjct: 101 AAAEMKARVVDLVGN-RAKPMWVSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLIT 159
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++T D + ++ F + + K E
Sbjct: 160 --------------------LVTRDQN----------LDPKKFQPRAIMNWISHQKNELV 189
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D A A+ K+ D I + Y LR+ N LD+ DLI +V +L FPEV
Sbjct: 190 APDQAVAAAKSG------NDRINGDVYVEYQRRLRAANVLDFDDLIMYTVTVLRKFPEVR 243
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN--------------RITIVGDDDQSIF 515
+ Y+ ++ ++VDE+QDT+ QY ++ L + +VGD DQSI+
Sbjct: 244 ERYRRRFRHVLVDEYQDTNTAQYQFIRELCGDGPVELDDGARSVDPPELMVVGDSDQSIY 303
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I F KDF + I L +NYRST+ I+ AA++LI+ N+ R KN+ TD
Sbjct: 304 AFRGATIRNIIDFEKDFPGARTILLEQNYRSTQTILTAANNLIKVNLNRPA-KNLWTDQG 362
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G KI+ E + A++ +I E G SYG +A+ YR + F+ F
Sbjct: 363 DGDKIVGYVADTEHDEAAWVARRIDELVDEGR---TSYGQVAVFYRTNAQSRAFEDVFIR 419
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY +K VR ++ LR DD RR+ + R +
Sbjct: 420 TGLPYRVVGGVRFYERKEVRDAVSYLRAIANPSDDVSLRRILNT---PRRGIGARAEAAV 476
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+ +T R+ SF A I +I RS + Q R + ++ +V + + +
Sbjct: 477 EMFATARRISFWEALKRI--DEIDSLATRS-VNQIRAFVSLMDGHIAMVEQGKRADEIAS 533
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTA---AKEE 811
S+ L E + + + K ++ L ++++ L++ +F++ E+
Sbjct: 534 SI--------LKESGYITELENSKDPQDETRLENLIE-LVSVAQEFVARVHAVDIDEAEQ 584
Query: 812 GNVDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVA 870
GNV+ + + L AF++ I+ +++ D++ VTL T+H +KGLE+D VF+
Sbjct: 585 GNVEDLELSGDDSLPAFLEQIALVADSDQVPA---DSDGVVTLMTLHTAKGLEFDTVFIT 641
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ--- 927
+ P + A T + EERRL YV +TRARK+LF+ + W Q
Sbjct: 642 GFEDGVFPHMRSLADA-----TELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNP 696
Query: 928 PSRFLKEIPHHLRE 941
PSRF+ EIP HL E
Sbjct: 697 PSRFIDEIPEHLIE 710
>gi|387504127|ref|YP_005945356.1| ATP-dependent DNA helicase [Propionibacterium acnes 6609]
gi|335278172|gb|AEH30077.1| ATP-dependent DNA helicase [Propionibacterium acnes 6609]
Length = 810
Score = 256 bits (654), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 213/734 (29%), Positives = 341/734 (46%), Gaps = 102/734 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN+ Q EA +P+L+VAG GSGK G+ P +ILA+TFT
Sbjct: 42 LADLNEPQREAVL-HAGSPVLVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTNK 100
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM+ R+ +VG AK + +STFHS ++++ R+ ++L + F IY +R I
Sbjct: 101 AAAEMKARVVDLVGN-RAKPMWVSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLIT 159
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++T D + ++ F + + K E
Sbjct: 160 --------------------LVTRDQN----------LDPKKFQPRAIMNWISHQKNELI 189
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D A A+ K+ D I + Y LR+ N LD+ DLI +V +L FPEV
Sbjct: 190 APDQAVAAAKSG------NDRINGDVYVEYQRRLRAANVLDFDDLIMYTVTVLRKFPEVR 243
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN--------------RITIVGDDDQSIF 515
+ Y+ ++ ++VDE+QDT+ QY ++ L + +VGD DQSI+
Sbjct: 244 ERYRRRFRHVLVDEYQDTNTAQYQFIRELCGDGPVELDDGARSVDPPELMVVGDSDQSIY 303
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I F KDF + I L +NYRST+ I+ AA++LI+ N+ R KN+ TD
Sbjct: 304 AFRGATIRNIIDFEKDFPGARTILLEQNYRSTQTILTAANNLIKVNLNRPA-KNLWTDQG 362
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G KI+ E + A++ +I E G SYG +A+ YR + F+ F
Sbjct: 363 DGDKIVGYVADTEHDEAAWVARRIDELVDEGR---TSYGQVAVFYRTNAQSRAFEDVFIR 419
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY +K VR ++ LR DD RR+ + R +
Sbjct: 420 TGLPYRVVGGVRFYERKEVRDAVSYLRAIANPSDDVSLRRILNT---PRRGIGARAEAAV 476
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+ +T R+ SF A I +I RS + Q R + ++ +V + + +
Sbjct: 477 EMFATARRISFWEALKRI--DEIDSLATRS-VNQIRAFVSLMDGHIAMVEQGKRADEIAS 533
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTA---AKEE 811
S+ L E + + + K ++ L ++++ L++ +F++ E+
Sbjct: 534 SI--------LKESGYITELENSKDPQDETRLENLIE-LVSVAQEFVARVHAVDIDEAEQ 584
Query: 812 GNVDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVA 870
GNV+ + + L AF++ I+ +++ D++ VTL T+H +KGLE+D VF+
Sbjct: 585 GNVEDLELSGDDSLPAFLEQIALVADSDQVPA---DSDGVVTLMTLHTAKGLEFDTVFIT 641
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ--- 927
+ P + A T + EERRL YV +TRARK+LF+ + W Q
Sbjct: 642 GFEDGVFPHMRSLADA-----TELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNP 696
Query: 928 PSRFLKEIPHHLRE 941
PSRF+ EIP HL E
Sbjct: 697 PSRFIDEIPEHLIE 710
>gi|424780435|ref|ZP_18207308.1| ATP-dependent DNA helicase UvrD/PcrA [Catellicoccus marimammalium
M35/04/3]
gi|422842837|gb|EKU27284.1| ATP-dependent DNA helicase UvrD/PcrA [Catellicoccus marimammalium
M35/04/3]
Length = 751
Score = 256 bits (653), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 216/717 (30%), Positives = 346/717 (48%), Gaps = 107/717 (14%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK----------------GISPSNILAMTFTTAA 290
+N QQ EA PLL++AG GSGK + P NILA+TFT A
Sbjct: 9 GMNPQQKEA-VEYTEGPLLVMAGAGSGKTRVLTHRIAYLLSTHMDLRPWNILAITFTNKA 67
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIE 350
A EM++R+ +++G ++++L +STFHS +++ R HAEKL S F I + + +
Sbjct: 68 AREMKERLENLIG-PSSRDLWVSTFHSMCVRILRRHAEKLGYHSNFSILDASETKTIV-- 124
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
++IL K + + D Y+R N +F
Sbjct: 125 -------KRILKEKNYDEEKFSADAILSYIRR---WKNETIFPE---------------- 158
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
+V K + +KI E A Y L+ + +D+ DLI ++ L FPEV
Sbjct: 159 -EVQKQLEGSTHILQKIACECYVA----YQEELKRNDTMDFDDLIMLTLSLFEEFPEVLA 213
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFR 529
+YQ+ ++ I VDE+QDT+ QY L+Q LA+ + + +VGD DQSI+++ GADI+ +F+
Sbjct: 214 QYQEQFRYIHVDEYQDTNHAQYLLVQQLAAKYQNLCVVGDADQSIYAWRGADITNILNFK 273
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRC-QLKNVQTDNSHGSKIIIKECHNE 588
KD+ KEI L +NYRST+ I+ AA+++IQ+N + QLK + TDN G KI +E
Sbjct: 274 KDYPKAKEILLEQNYRSTKTILNAANNVIQNNYDQGDQLKQLWTDNEEGEKITYYTADDE 333
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
A+ +I +K+ E ++G Y +AILYR + + F + +P++ + G+ F
Sbjct: 334 KAEAIYIAEKMKELIADG----FHYHEMAILYRTNAQSRALEDVFMQFNLPYHMVGGLKF 389
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID--HIDKISTIRKCSF 705
Y +K ++ +IA L+ D +RR+ KR I ++KI K
Sbjct: 390 YDRKEIKDLIAYLKVIANPQDMISFRRIINT--------PKRGIGATSLEKILAFAKEQG 441
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV--ITSVANMVPQK 763
+SA A ++G +G K + +E ++ V R +S +T ++V
Sbjct: 442 LSAIEACKNASMAG-------IRG-KAVGQMEQFAEQVERWAELSKEMDLTEFVDLV--- 490
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST--KFTAAKEEGNVDQDKKGC 821
LE+ D +L E L + + + ++ +F S F E G V +K+
Sbjct: 491 --LEESGYYD-----MLRESKGLEN--ETRMENLKEFQSVTRAFVERWERGEV--EKELG 539
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
+L AF++ +S + + +SV T+H +KGLE+ +VF+ E P
Sbjct: 540 QTMLSAFLNDLS--LLSDMDIKEEEIPDSVAFMTLHAAKGLEFPVVFIVGLEENLFP--- 594
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
+ E +EEERRL YV +TRA K+LF+L M Q PSRF++EI
Sbjct: 595 ---SKIEE--DQIEEERRLAYVGITRAEKRLFLLNARRRMFFGRTQYNSPSRFIEEI 646
>gi|419714737|ref|ZP_14242149.1| putative ATP-dependent DNA helicase PcrA [Mycobacterium abscessus
M94]
gi|382945271|gb|EIC69569.1| putative ATP-dependent DNA helicase PcrA [Mycobacterium abscessus
M94]
Length = 807
Score = 255 bits (652), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 221/745 (29%), Positives = 346/745 (46%), Gaps = 116/745 (15%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAA 291
LN QQ AA PLLIVAG GSGK +SP ILA+TFT AA
Sbjct: 26 GLNPQQ-RAAVAHQGAPLLIVAGAGSGKTAVLTRRIAYLLAARDVSPGQILAITFTNKAA 84
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAIIE 350
+EMR+R+G IV + + +STFHS +++ R+ A L S F IY RR +
Sbjct: 85 AEMRERVGRIVAN-RVQSMWVSTFHSSCVRILRNQASLLPGLNSNFSIYDSDDSRRLL-- 141
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
+++ + L +KR S +L T ++S+ K N+
Sbjct: 142 --QMIGRDMGLDIKRYSPRLLAT--------------------AISNLK----NELISPE 175
Query: 411 MDVAK-ASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
VA +G E R I A + Y LR+ NALD+ DLI +V +L FP++
Sbjct: 176 QAVANLTAGGQDGELRGDLPLIVADVYGEYQRRLRAANALDFDDLIGETVAVLQQFPQIA 235
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLL-QILASH------------NRITIVGDDDQSIFS 516
Q Y+ ++ I+VDE+QDT+ QY L+ +++ +H + +VGD DQSI++
Sbjct: 236 QFYRRKFRHILVDEYQDTNHAQYVLVRELVGAHVDRTVDPDGPEPAELCVVGDADQSIYA 295
Query: 517 FNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSH 576
F GA I + F +D+ N K I L +NYRST+ I+ AA+S+I N R + K + TD+
Sbjct: 296 FRGATIRNIEEFERDYPNAKTILLEQNYRSTQNILSAANSVIAKNANRRE-KRLWTDSGE 354
Query: 577 GSKIIIKECHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
G I+ NE + +FI ID + + S +YG IA+ YR + + + F
Sbjct: 355 GELIVGYVADNEHDEASFIAREIDGLFDR------SDANYGDIAVFYRTNNNSRSLEEIF 408
Query: 634 RERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID 692
IP+ + GV FY +K +R I+A LR D RR+ ++ + D
Sbjct: 409 IRTGIPYKVVGGVRFYERKEIRDIVAYLRVLTNPGDAVSLRRILNT-------PRRGIGD 461
Query: 693 HIDKISTIRK----CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKL---VRR 745
+ + F A D K++ RS+ + + ++M+ ++ +R
Sbjct: 462 RAEACVAVHAETNGIGFGEALADAAAGKVAMLNSRSE----KAIAAFMDMLDQIRVTLRT 517
Query: 746 E-----PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDF 800
+ P I V+ +V N +Y LE + D +L DN L L++ +F
Sbjct: 518 DDPGALPDIGDVVEAVLNHTGYRYELENSS----DPQELARLDN-----LNELVSVAHEF 568
Query: 801 LSTKFTAAKEEGNV---DQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIH 857
+ A +V D+D L+AF++ +S + VT+ T+H
Sbjct: 569 SADAANAQAAGEDVPGDDEDVGAPPGSLEAFLERVS--LVADADELPESSAGVVTMMTLH 626
Query: 858 QSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV 917
+KGLE+ +VFV + P + V + EERRL YV +TRAR++L++
Sbjct: 627 TAKGLEFPVVFVTGWEDGMFPHMRALGDPV-----ELAEERRLAYVGITRARQRLYLSRA 681
Query: 918 MMDANW--QLLQP-SRFLKEIPHHL 939
+ ++W ++ P SRFL+EIP L
Sbjct: 682 KVRSSWGQPMMNPESRFLQEIPQEL 706
>gi|365869047|ref|ZP_09408594.1| putative ATP-dependent DNA helicase PcrA [Mycobacterium massiliense
CCUG 48898 = JCM 15300]
gi|363998504|gb|EHM19710.1| putative ATP-dependent DNA helicase PcrA [Mycobacterium massiliense
CCUG 48898 = JCM 15300]
Length = 807
Score = 255 bits (652), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 219/744 (29%), Positives = 347/744 (46%), Gaps = 114/744 (15%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAA 291
LN QQ AA PLLIVAG GSGK +SP ILA+TFT AA
Sbjct: 26 GLNPQQ-RAAVAHQGAPLLIVAGAGSGKTAVLTRRIAYLLAARDVSPGQILAITFTNKAA 84
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAIIE 350
+EMR+R+G IV + + +STFHS +++ R+ A L S F IY RR +
Sbjct: 85 AEMRERVGRIVAN-RVQSMWVSTFHSSCVRILRNQASLLPGLNSNFSIYDSDDSRRLL-- 141
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
+++ + L +KR S +L T A + N ++ ++ L
Sbjct: 142 --QMIGRDMGLDIKRYSPRLLAT--------AISNLKNELISPEQAAANLT--------- 182
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
+G E R +I A + Y LR+ NALD+ DLI +V +L FP++ Q
Sbjct: 183 ------AGGQEGELRGDLPQIVADVYGEYQRRLRAANALDFDDLIGETVAVLQQFPQIAQ 236
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLL-QILASH------------NRITIVGDDDQSIFSF 517
Y+ ++ I+VDE+QDT+ QY L+ +++ +H + +VGD DQSI++F
Sbjct: 237 FYRRKFRHILVDEYQDTNHAQYVLVRELVGAHVDRTVDPDGPEPAELCVVGDADQSIYAF 296
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GA I + F +D+ N K I L +NYRST+ I+ AA+S+I N R + K + TD+ G
Sbjct: 297 RGATIRNIEEFERDYPNAKTILLEQNYRSTQNILSAANSVIAKNANRRE-KRLWTDSGEG 355
Query: 578 SKIIIKECHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFR 634
I+ NE + +FI ID + + +YG +A+ YR + + + F
Sbjct: 356 ELIVGYVADNEHDEASFIAREIDGLFDRGD------ANYGDVAVFYRTNNNSRSLEEIFI 409
Query: 635 ERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH 693
IP+ + GV FY +K +R I+A LR D RR+ ++ + D
Sbjct: 410 RTGIPYKVVGGVRFYERKEIRDIVAYLRVLTNPGDAVSLRRILNT-------PRRGIGDR 462
Query: 694 IDKISTIRK----CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKL---VRRE 746
+ + F A D K++ RS+ + + ++M+ ++ +R +
Sbjct: 463 AEACVAVHAETNGIGFGEALADAAAGKVAMLNSRSE----KAIAAFMDMLDQIRVTLRTD 518
Query: 747 -----PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDF- 800
P I V+ +V N +Y LE + D +L DN L L++ +F
Sbjct: 519 DPGALPDIGDVVEAVLNHTGYRYELENSS----DPQELARLDN-----LNELVSVAHEFS 569
Query: 801 -LSTKFTAAKEEGNVDQDKKGC-INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQ 858
+ AA E+ VD + G L+AF++ +S + VT+ T+H
Sbjct: 570 ADAANAQAAGEDVPVDGEDVGAPPGSLEAFLERVS--LVADADELPESSAGVVTMMTLHT 627
Query: 859 SKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM 918
+KGLE+ +VFV + P + V + EERRL YV +TRAR++L++
Sbjct: 628 AKGLEFPVVFVTGWEDGMFPHMRALGDPV-----ELAEERRLAYVGITRARQRLYLSRAK 682
Query: 919 MDANW--QLLQP-SRFLKEIPHHL 939
+ ++W ++ P SRFL+EIP L
Sbjct: 683 VRSSWGQPMMNPESRFLQEIPQEL 706
>gi|296118283|ref|ZP_06836864.1| ATP-dependent DNA helicase PcrA [Corynebacterium ammoniagenes DSM
20306]
gi|295968841|gb|EFG82085.1| ATP-dependent DNA helicase PcrA [Corynebacterium ammoniagenes DSM
20306]
Length = 926
Score = 255 bits (652), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 210/740 (28%), Positives = 362/740 (48%), Gaps = 92/740 (12%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFT 287
K ++ LN QQ+EA +PLLI+AG GSGK G++P ILA+TFT
Sbjct: 131 KLVEGLNPQQVEA-VQHTGSPLLIIAGAGSGKTAVLTRRIAYLMGTRGVAPWEILAITFT 189
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRR 346
AA+EM++R+G +VG A+ + ++TFHS +++ R A+ + + F IY RR
Sbjct: 190 NKAAAEMKERVGQLVGP-VAERMWVATFHSICVRILRQQAQLVPGLNTNFTIYDGDDSRR 248
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
+ ++ + L +K+ ++ +L +S+ K N+
Sbjct: 249 LLT----MIAKDMQLDIKKFTSRVLAN--------------------QISNHK----NEL 280
Query: 407 ERDGMDVAKAS-GKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+A+A K P E A + Y LR+ NA+D+ DLI V++
Sbjct: 281 TSPDTALAEAEKTKNPFELTV------ARVFAEYQRRLRAANAVDFDDLIGEVVRIFVQH 334
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-----ITIVGDDDQSIFSFNGA 520
P+V + Y+ +K +++DE+QDT+ QYSL+ L +R + +VGD DQSI++F GA
Sbjct: 335 PQVVEFYRRRFKHVLIDEYQDTNHAQYSLVAALVGDDRENGPELCVVGDSDQSIYAFRGA 394
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
I + F +D+ + I L +NYRST+ I+ AA+++I N R + KN+ TD+ G K+
Sbjct: 395 TIRNIEDFERDYPGARTILLEQNYRSTQTILSAANAVIAQNENRRK-KNLWTDHGEGEKV 453
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
I NE + FI +I A G +Y +AI+YR + + + F IP+
Sbjct: 454 IGYVADNEHDEARFIASEIDALADKG----RNYSDLAIMYRTNNASRALEDIFVRSGIPY 509
Query: 641 N-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAF-LLLEKEEKKRVIDHIDKIS 698
+ G FY ++ +R IIA LR D RR+ + + + ++ H D ++
Sbjct: 510 KVVGGTRFYERREIRDIIAYLRIMDNPDDSVSLRRIINVPKRAIGDKAQAQIATHADNLN 569
Query: 699 -TIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTL-EMISKL---VRREPSISAVI 753
+ K + + ++ G GT + +T+ ++ + E I + V ++P + ++
Sbjct: 570 ISFGKALYFAEQGEVPGL---GTRAVNAVTKFNDMMSGIREQIPAMINDVTKQPDLGELV 626
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
+++ + K LE A D G L+ N+L SV + ++ + L+ F + +
Sbjct: 627 SAILDATGYKAELE--ASNDPQDGARLDNLNELVSVAREFSSEAANQLA--FDGSDSDIE 682
Query: 814 VD---QDKKGCINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIHQSKGLEWDIVFV 869
V + + L+AF++ +S Q +NE+ VTL T+H +KGLE+ +VF+
Sbjct: 683 VAPELSEGEAAPGSLQAFLEKVSLVADAD---QIPENESGVVTLMTLHTAKGLEFPVVFL 739
Query: 870 AKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW--QLLQ 927
E + P + + EERRL YV +TRAR++L++ ++ ++W +
Sbjct: 740 TGWEEGQFPHMRSLGDP-----KELSEERRLAYVGITRAREELYLTRAILRSSWGNPMTN 794
Query: 928 P-SRFLKEIPHHLREVQAEQ 946
P SRFL EIP L + + E+
Sbjct: 795 PASRFLGEIPEDLIDWRREE 814
>gi|225620088|ref|YP_002721345.1| ATP-dependent DNA helicase [Brachyspira hyodysenteriae WA1]
gi|225214907|gb|ACN83641.1| ATP-dependent DNA helicase [Brachyspira hyodysenteriae WA1]
Length = 665
Score = 255 bits (652), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 213/725 (29%), Positives = 337/725 (46%), Gaps = 111/725 (15%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASE 293
LN++Q +A + PLL +AG GSGK G+ PS ILA+TFT AA+E
Sbjct: 5 LNEEQRQA-VEHIDGPLLALAGAGSGKTRVITERIAYLIKHGVLPSQILAVTFTNKAAAE 63
Query: 294 MRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVR 353
MR+RI ++ K K+L +STFHSF +++ + EKL + F IY R
Sbjct: 64 MRERITKLL-KEKPKQLVVSTFHSFCVRVLKGDIEKLGYKNNFSIYSSSDSRT------- 115
Query: 354 LLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDV 413
L+ N +++ I + L D + F N M +++ ++ E+
Sbjct: 116 LIRN----ILREIKINTLNYDENLFAWYIDRFKNNLM-----KPYEVEPHDDLEK----- 161
Query: 414 AKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQ 473
I + E Y L+ NA+D++DLI+ ++ L FPEV +YQ
Sbjct: 162 -----------------IAKRVYEVYQSYLKGYNAVDFNDLINLTIDLYVEFPEVLNKYQ 204
Query: 474 DSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDSFRKDF 532
+ ++ I+VDE+QDT+ QY L +LAS R I +VGDDDQSI++F GAD+S SF ++
Sbjct: 205 ERFRYIMVDEYQDTNFAQYKLTTLLASKYRNIAVVGDDDQSIYAFRGADVSNILSFENEY 264
Query: 533 LNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQC 592
+ K + LT+NYRST+ I+EAA S+I +N +R K V + G I C +E +
Sbjct: 265 PDAKIVTLTKNYRSTKAILEAAHSVISNNTQRKD-KKVVAEGEEGIPPTIMPCEDEREEA 323
Query: 593 AFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGV-AFYRKK 651
F+ D I+ ++ + +Y A+L+R ++F+ AFR R +P+ + G FY +K
Sbjct: 324 QFVADSIINYSI---SKRLNYEDFAVLFRMNAQSRLFEEAFRLRGLPYTVVGAFQFYERK 380
Query: 652 VVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACD 711
++ I+A L L + E D++S +R I+
Sbjct: 381 EIKDILAYLN------------------LFVNPE---------DEVSLLR---VINIPKR 410
Query: 712 IFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAV 771
GA + + G + TL + P A I ++ + L
Sbjct: 411 GIGAVAINNLNEASIKNGVSLYETLLNYESMDDISPKAKAGIKDFLEVIDHYHNLFTVDK 470
Query: 772 VDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN-------- 823
+ KL N V+ Y ++ + TK AK+ NV+ G +
Sbjct: 471 NALERPKLYENINKFLDVIAY-HNEILNSSDTKEQGAKKMENVESLMNGILEYEKSNKNA 529
Query: 824 VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
LK ++D I E + D + + L +IH +KGLE+ V++ + +P H+
Sbjct: 530 TLKNYLDRILLMSIEE-QNDDEDKKKGIMLMSIHAAKGLEFPYVYICGMEDGIMP--HQ- 585
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILY----VMMDANWQLLQPSRFLKEIPHHL 939
+++E G +EEERRL YVAMTRA+K L + Y M + PS FL+E+ +L
Sbjct: 586 -KSLDENG--LEEERRLCYVAMTRAKKHLTLTYCRSRTKMGKKVE-CTPSVFLEEMSANL 641
Query: 940 REVQA 944
E A
Sbjct: 642 PEEMA 646
>gi|358053575|ref|ZP_09147317.1| ATP-dependent DNA helicase PcrA [Staphylococcus simiae CCM 7213]
gi|357256950|gb|EHJ07265.1| ATP-dependent DNA helicase PcrA [Staphylococcus simiae CCM 7213]
Length = 730
Score = 255 bits (651), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 217/727 (29%), Positives = 347/727 (47%), Gaps = 121/727 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +N +Q EA PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAKEMKERVQKLVGDE-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I S M ++S+ K N+
Sbjct: 123 D---VLKNENI---------------------DSKKFEPRMFIGAISNLK----NEL--- 151
Query: 410 GMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP + +K + ++ A + Y L+ ALD+ DLI ++ L
Sbjct: 152 ---------KTPKDAQKEANDYHSQMVATVYSGYQRQLQRNEALDFDDLIMTTITLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV + YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 203 PEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ K I L +NYRST+ I+ AA+ +I+HN +R + K + T N++G KI E
Sbjct: 263 ILSFEEDYPEAKTIFLEQNYRSTKTILNAANEVIKHNSER-KPKGLWTANTNGDKINYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++H NG Y +AILYR +V + F + IP+ +
Sbjct: 322 AMTERDEAEYVVREIMKHHRNGKP----YSEMAILYRTNAQSRVLEETFMKSNIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR + +DKI
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINV--------PKRGVGPSSVDKIQNYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREP--SISAVITSVANM 759
+ IS + G K+ +TQ + L E+I L++ + IS ++ V
Sbjct: 430 VQNNISMFDALGEVDFIGLSKK--VTQ--ECLNFYELIQNLIKEQEFLEISDIVEEVLKK 485
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
+ +LE+ +N L S + L ++ +F+S E N +++
Sbjct: 486 SGYREMLER--------------ENTLES--RSRLENLDEFMS---VPKDYEENTPLEEQ 526
Query: 820 GCINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
IN L + + I E +T E+ VTL T+H +KGLE+ IVF+ E+
Sbjct: 527 SLINFLTDLSLVADIDEADT----------ESGVTLMTMHSAKGLEYPIVFIMGMEESLF 576
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKE 934
P + ++ +EEERR+ YVA+TRA + L+I + M+ Q PSRFL+E
Sbjct: 577 PHIRAIK---SDDDHEMEEERRICYVAITRAEEVLYITHATTRMLFGRSQSNMPSRFLQE 633
Query: 935 IPHHLRE 941
IP L E
Sbjct: 634 IPEELLE 640
>gi|418878864|ref|ZP_13433096.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1165]
gi|418894674|ref|ZP_13448772.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1057]
gi|377693142|gb|EHT17517.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1165]
gi|377696027|gb|EHT20384.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1057]
Length = 730
Score = 255 bits (651), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 218/725 (30%), Positives = 344/725 (47%), Gaps = 117/725 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +N +Q EA PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I K+ M G ++ L
Sbjct: 123 D---VLKNENI-DSKKFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTPA+ +K ++ A + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV + YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 203 PEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF KD+ I L +NYRST+ I+ AA+ +I++N +R + K + T N++G KI E
Sbjct: 263 ILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + F+I +I++H NG Y +AILYR +V + F + +P+ +
Sbjct: 322 AMTERDEAEFVIREIMKHQRNGK----KYQDMAILYRTNAQSRVLEETFMKSNMPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR + ++K+
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINV--------PKRGVGPSSVEKVQNYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + A G K+ +TQ + L E+I L++ + + I + + V
Sbjct: 430 LQNNISMFDALGEADFIGLSKK--VTQ--ECLSFYELIQSLIKEQEFLE--IHEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
QK + +L +N L S + L ++ +F+S E N +++
Sbjct: 484 QKSGYRE----------MLERENTLES--RSRLENIDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E +T EN VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEADT----------ENGVTLMTMHSAKGLEFPIVFIMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ +E ++EERR+ YVA+TRA + L+I + M+ Q PSRFLKEIP
Sbjct: 579 IRAIK---SEDDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIP 635
Query: 937 HHLRE 941
L E
Sbjct: 636 ESLLE 640
>gi|330836710|ref|YP_004411351.1| UvrD/REP helicase [Sphaerochaeta coccoides DSM 17374]
gi|329748613|gb|AEC01969.1| UvrD/REP helicase [Sphaerochaeta coccoides DSM 17374]
Length = 668
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 231/750 (30%), Positives = 339/750 (45%), Gaps = 120/750 (16%)
Query: 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAA 291
+ LN +Q AA + PLLI+AG GSGK GISP +ILA+TFT AA
Sbjct: 7 RELNPEQYLAAST-IDGPLLIIAGAGSGKTRMLTFRVAHMLENGISPHSILALTFTNKAA 65
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEA 351
+EM +RI + G + KEL +TFH+F ++L + + L F I+
Sbjct: 66 AEMAERIHDLTG-VSRKELMATTFHAFGMKLLKKYIHLLGYKDNFTIFDASD-------- 116
Query: 352 VRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
V+ + +D++ + GY A YN FE +
Sbjct: 117 -----------VQTLLSDVIH---NLGYEEA-------------------DYNFFELASL 143
Query: 412 DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQE 471
+G+ A FR G + + Y L++ NALD+ DLI ++L + PE E
Sbjct: 144 FSDVKTGR--ASFRSDGKSELSHVYTEYQKSLKAYNALDFDDLIMLPLRLFAEHPETLAE 201
Query: 472 YQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDSFRK 530
+ ++ I+VDEFQDTS QYS+++ LA H + +VGDDDQSI+S+ GA+ F
Sbjct: 202 IRKTYSHILVDEFQDTSLTQYSIVKELAWEHRNLCVVGDDDQSIYSWRGANYRNIIMFES 261
Query: 531 DFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDA 590
DF EI+L RNYRST I+EAA+++I HN +R + K + T S GS I E +ED
Sbjct: 262 DFPERLEIKLERNYRSTGTILEAANNVIVHNTER-KSKKLWTQESVGSMIHRLEPKDEDD 320
Query: 591 QCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGVA-F 647
+ A II KI L A + P + + +L R V + F P I G A F
Sbjct: 321 EAAMIIGKIRELRFAHDYP-----WKNFGVLVRTNHMLPVLENRFLLTNTPCKISGGASF 375
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVF---KAFLLLEKEEKKRVIDHIDKISTIRKCS 704
+ +K V+ II+ LR + DD + RV + + + EK R ++ S CS
Sbjct: 376 FDRKEVKDIISYLRLLVNTKDDVSFLRVINVPRRGIGRKTIEKIRATAESNQCSLHEACS 435
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITS-VANMVPQK 763
+S A D SG + T L + KL + S V+ + V N+ +
Sbjct: 436 LVSIATD------SGMKGNQKKTLADFFALIEDYREKLFHAGKNKSKVLMALVENISYKD 489
Query: 764 YLLEQ----RAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
Y+++Q V+F G + F A D D
Sbjct: 490 YVIDQYPTNEKAVNFKMGSI-----------------------RTFNAMFGRWERDPDNN 526
Query: 820 GCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
G + DY++ + D+++ V L T+H SKGLE+ +VF+A + IP
Sbjct: 527 GS-----SVFDYLNRLALSG--KENTDDDDKVHLMTMHASKGLEFAVVFLAGIEDHIIPH 579
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSRFLKEIP 936
+ E S+ EERRL YVA+TRARK L+I M + L PSRFL EIP
Sbjct: 580 AR----TLEENQDSLAEERRLFYVALTRARKHLYISTCMARHRGKELTASVPSRFLLEIP 635
Query: 937 HHLREVQAEQSVQDQHENIPEGTAQFTINL 966
HL + E++ E++ +F L
Sbjct: 636 AHLVTTEDEEAKPASKEDLSRILDKFKAKL 665
>gi|418645954|ref|ZP_13208070.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus IS-55]
gi|375022023|gb|EHS15516.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus IS-55]
Length = 730
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 218/725 (30%), Positives = 344/725 (47%), Gaps = 117/725 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +N +Q EA PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I K+ M G ++ L
Sbjct: 123 D---VLKNENI-DSKKFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTPA+ +K ++ A + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV + YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 203 PEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF KD+ I L +NYRST+ I+ AA+ +I++N +R + K + T N++G KI E
Sbjct: 263 ILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + F+I +I++H NG Y +AILYR +V + F + +P+ +
Sbjct: 322 AMTERDEAEFVIREIMKHQRNGK----KYQDMAILYRTNAQSRVLEETFMKSNMPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR + ++K+
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINV--------PKRGVGPSSVEKVQNYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + A G K+ +TQ + L E+I L++ + + I + + V
Sbjct: 430 LQNNISMFDALGEADFIGLSKK--VTQ--ECLNFYELIQSLIKEQEFLE--IHEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
QK + +L +N L S + L ++ +F+S E N +++
Sbjct: 484 QKSGYRE----------MLERENTLES--RSRLENIDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E +T EN VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEADT----------ENGVTLMTMHSAKGLEFPIVFIMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ +E ++EERR+ YVA+TRA + L+I + M+ Q PSRFLKEIP
Sbjct: 579 IRAIK---SEDDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIP 635
Query: 937 HHLRE 941
L E
Sbjct: 636 ESLLE 640
>gi|418653358|ref|ZP_13215297.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus IS-99]
gi|375019020|gb|EHS12586.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus IS-99]
Length = 730
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 218/725 (30%), Positives = 344/725 (47%), Gaps = 117/725 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +N +Q EA PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I K+ M G ++ L
Sbjct: 123 D---VLKNENI-DSKKFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTPA+ +K ++ A + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFECV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV + YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 203 PEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF KD+ I L +NYRST+ I+ AA+ +I++N +R + K + T N++G KI E
Sbjct: 263 ILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + F+I +I++H NG Y +AILYR +V + F + +P+ +
Sbjct: 322 AMTERDEAEFVIREIMKHQRNGK----KYQDMAILYRTNAQSRVLEETFMKSNMPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR + ++K+
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINV--------PKRGVGPSSVEKVQNYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + A G K+ +TQ + L E+I L++ + + I + + V
Sbjct: 430 LQNNISMFDALGEADFIGLSKK--VTQ--ECLNFYELIQSLIKEQEFLE--IHEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
QK + +L +N L S + L ++ +F+S E N +++
Sbjct: 484 QKSGYRE----------MLERENTLES--RSRLENIDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E +T EN VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEADT----------ENGVTLMTMHSAKGLEFPIVFIMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ +E ++EERR+ YVA+TRA + L+I + M+ Q PSRFLKEIP
Sbjct: 579 IRAIK---SEDDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIP 635
Query: 937 HHLRE 941
L E
Sbjct: 636 ESLLE 640
>gi|385784006|ref|YP_005760179.1| ATP-dependent DNA helicase [Staphylococcus lugdunensis N920143]
gi|418413682|ref|ZP_12986898.1| ATP-dependent DNA helicase pcrA [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|339894262|emb|CCB53531.1| ATP-dependent DNA helicase [Staphylococcus lugdunensis N920143]
gi|410877320|gb|EKS25212.1| ATP-dependent DNA helicase pcrA [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 730
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 211/726 (29%), Positives = 350/726 (48%), Gaps = 121/726 (16%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAA 291
++ND+Q EA PLLI+AG GSGK G+SP NILA+TFT AA
Sbjct: 7 NMNDEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLNEKGVSPYNILAITFTNKAA 65
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEA 351
EM+ R+ +VG+ A + +STFHS +++ R A+++ F I Q+ I +
Sbjct: 66 KEMKQRVEQLVGEE-ASVIWMSTFHSMCVKILRRDADRIGIERNFTIIDPTDQKSVIKD- 123
Query: 352 VRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
+L+NE I S M ++S+ K N+
Sbjct: 124 --VLKNENI---------------------DSKKFEPRMFISAISNLK----NEL----- 151
Query: 412 DVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
KTP + +K +++ A + Y L ALD+ DLI +++L P+
Sbjct: 152 -------KTPDDAQKEANNYHEQMIATVYSGYQRQLSRNEALDFDDLIMTTIRLFERVPD 204
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFD 526
+ YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 205 ALEYYQNKFQYIHVDEYQDTNKAQYTLVKMLASKFKNLCVVGDSDQSIYGWRGADIQNIL 264
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
SF +D+ K I L +NYRST+ I+ AA+ +I++N +R + K + T N++G KI E
Sbjct: 265 SFEEDYPEAKSIYLEQNYRSTKTILNAANEVIKNNTER-KPKGLWTANTNGEKIKYYEAM 323
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
E + +++ ++++H NG SYG IAILYR +V + F + IP+ + G
Sbjct: 324 TERDEAEYVVREVMKHQRNGK----SYGDIAILYRTNAQSRVLEETFMKSNIPYTMVGGQ 379
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIRKC 703
FY +K ++ +++ LR DD +R+ KR I ++KI
Sbjct: 380 KFYDRKEIKDLLSYLRIVANSNDDISLQRIINV--------PKRGIGPSSVEKIQAYALQ 431
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREP--SISAVITSVANMVP 761
+ IS + A G K+ +TQG + +++ L++ + IS ++ +
Sbjct: 432 NNISMFDALSEADFIGLSKK--VTQG--CIQFYDLLQNLIKEQEFLEISEIVEEILEKTG 487
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
+ +LE+ ++ RS L+ ++ +F+S E N +++
Sbjct: 488 YRAMLEREQTIES------------RSRLE----NLDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E + ++ VT+ T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEAQI----------DDGVTMMTMHSAKGLEFPIVFLMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ ++ ++EERR+ YVA+TRA ++L+I M+ Q PSRFL+EIP
Sbjct: 579 IRAIK---SDDDHDMQEERRICYVAITRAEEQLYITRATSRMLFGRSQSNMPSRFLEEIP 635
Query: 937 HHLREV 942
L E+
Sbjct: 636 EDLLEL 641
>gi|49484146|ref|YP_041370.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
MRSA252]
gi|295428487|ref|ZP_06821114.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|418581863|ref|ZP_13145943.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1605]
gi|418892796|ref|ZP_13446905.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1176]
gi|418898564|ref|ZP_13452632.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIGC341D]
gi|418900438|ref|ZP_13454496.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1214]
gi|418909833|ref|ZP_13463824.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG149]
gi|418917935|ref|ZP_13471891.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1267]
gi|418923677|ref|ZP_13477590.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1233]
gi|418985605|ref|ZP_13533292.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1500]
gi|68605635|sp|Q6GFF2.1|PCRA_STAAR RecName: Full=ATP-dependent DNA helicase PcrA
gi|49242275|emb|CAG40982.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
MRSA252]
gi|295127469|gb|EFG57108.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|377704165|gb|EHT28476.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1214]
gi|377706285|gb|EHT30584.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1500]
gi|377711413|gb|EHT35646.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1605]
gi|377729398|gb|EHT53493.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1176]
gi|377733271|gb|EHT57316.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1233]
gi|377749242|gb|EHT73193.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1267]
gi|377750779|gb|EHT74716.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG149]
gi|377758684|gb|EHT82567.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIGC341D]
Length = 730
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 219/726 (30%), Positives = 346/726 (47%), Gaps = 119/726 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +N +Q EA PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I K+ M G ++ L
Sbjct: 123 D---VLKNENI-DSKKFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTPA+ +K ++ A + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV + YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 203 PEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF KD+ I L +NYRST+ I+ AA+ +I++N +R + K + T N++G KI E
Sbjct: 263 ILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + F+I +I++H NG Y +AILYR +V + F + +P+ +
Sbjct: 322 AMTERDEAEFVIREIMKHQRNGK----KYQDMAILYRTNAQSRVLEETFMKSNMPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR + ++K+
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINV--------PKRGVGPSSVEKVQNYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + A G K+ +TQ + L E+I L++ + + I + + V
Sbjct: 430 LQNNISMFDALGEADFIGLSKK--VTQ--ECLNFYELIQSLIKEQEFLE--IHEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
QK + +L +N L S + L ++ +F+S E N +++
Sbjct: 484 QKSGYRE----------MLERENTLES--RSRLENIDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E +T EN VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEADT----------ENGVTLMTMHSAKGLEFPIVFIMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGT-SVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
+ A+ +G ++EERR+ YVA+TRA + L+I + M+ Q PSRFLKEI
Sbjct: 579 IR----AIKSEGDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEI 634
Query: 936 PHHLRE 941
P L E
Sbjct: 635 PESLLE 640
>gi|418563624|ref|ZP_13128058.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21262]
gi|371970239|gb|EHO87661.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21262]
Length = 730
Score = 254 bits (650), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 218/725 (30%), Positives = 344/725 (47%), Gaps = 117/725 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +N +Q EA PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I K+ M G ++ L
Sbjct: 123 D---VLKNENI-DSKKFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTPA+ +K ++ A + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV + YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 203 PEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF KD+ I L +NYRST+ I+ AA+ +I++N +R + K + T N++G KI E
Sbjct: 263 ILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + F+I +I++H NG Y +AILYR +V + F + +P+ +
Sbjct: 322 AMTERDEAEFVIREIMKHQRNGK----KYQDMAILYRTNAQSRVLEETFMKSNMPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR + ++K+
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINV--------PKRGVGPSSVEKVQNYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + A G K+ +TQ + L E+I L++ + + I + + V
Sbjct: 430 LQNNISMFDALGEADFIGLSKK--VTQ--ECLNFYELIQSLIKEQEFLE--IHEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
QK + +L +N L S + L ++ +F+S E N +++
Sbjct: 484 QKSGYRE----------MLERENTLES--RSRLENIDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E +T EN VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEADT----------ENGVTLMTMHSAKGLEFPIVFIMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ +E ++EERR+ YVA+TRA + L+I + M+ Q PSRFLKEIP
Sbjct: 579 IRAIK---SEDDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIP 635
Query: 937 HHLRE 941
L E
Sbjct: 636 ESLLE 640
>gi|419784491|ref|ZP_14310258.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus IS-M]
gi|383364104|gb|EID41426.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus IS-M]
Length = 730
Score = 254 bits (650), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 218/725 (30%), Positives = 344/725 (47%), Gaps = 117/725 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +N +Q EA PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I K+ M G ++ L
Sbjct: 123 D---VLKNENI-DSKKFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTPA+ +K ++ A + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV + YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 203 PEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF KD+ I L +NYRST+ I+ AA+ +I++N +R + K + T N++G KI E
Sbjct: 263 ILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + F+I +I++H NG Y +AILYR +V + F + +P+ +
Sbjct: 322 AMTERDEAEFVIREIMKHQCNGK----KYQDMAILYRTNAQSRVLEETFMKSNMPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR + ++K+
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINV--------PKRGVGPSSVEKVQNYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + A G K+ +TQ + L E+I L++ + + I + + V
Sbjct: 430 LQNNISMFDALGEADFIGLSKK--VTQ--ECLNFYELIQSLIKEQEFLE--IHEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
QK + +L +N L S + L ++ +F+S E N +++
Sbjct: 484 QKSGYRE----------MLERENTLES--RSRLENIDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E +T EN VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEADT----------ENGVTLMTMHSAKGLEFPIVFIMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ +E ++EERR+ YVA+TRA + L+I + M+ Q PSRFLKEIP
Sbjct: 579 IRAIK---SEDDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIP 635
Query: 937 HHLRE 941
L E
Sbjct: 636 ESLLE 640
>gi|21283575|ref|NP_646663.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
MW2]
gi|49486724|ref|YP_043945.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57650656|ref|YP_186790.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus COL]
gi|87160459|ref|YP_494538.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|88195804|ref|YP_500614.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|151222055|ref|YP_001332877.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
str. Newman]
gi|161510128|ref|YP_001575787.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|253729683|ref|ZP_04863848.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|258451029|ref|ZP_05699065.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A5948]
gi|282923244|ref|ZP_06330925.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9765]
gi|284024952|ref|ZP_06379350.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp.
aureus 132]
gi|294849454|ref|ZP_06790196.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9754]
gi|297208935|ref|ZP_06925339.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|300913008|ref|ZP_07130446.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus TCH70]
gi|304379093|ref|ZP_07361840.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|379015109|ref|YP_005291345.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus VC40]
gi|384870447|ref|YP_005753161.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp.
aureus T0131]
gi|387143494|ref|YP_005731887.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
TW20]
gi|415689546|ref|ZP_11452831.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CGS01]
gi|417649100|ref|ZP_12298906.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21189]
gi|417654225|ref|ZP_12303949.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21193]
gi|417797029|ref|ZP_12444229.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21305]
gi|417897694|ref|ZP_12541622.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21259]
gi|418278496|ref|ZP_12892377.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21178]
gi|418286771|ref|ZP_12899409.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21209]
gi|418313341|ref|ZP_12924832.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21334]
gi|418317622|ref|ZP_12929039.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21232]
gi|418570032|ref|ZP_13134331.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21283]
gi|418579831|ref|ZP_13143922.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1114]
gi|418600170|ref|ZP_13163639.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21343]
gi|418641404|ref|ZP_13203614.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus IS-24]
gi|418648521|ref|ZP_13210563.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus IS-88]
gi|418651478|ref|ZP_13213479.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus IS-91]
gi|418659908|ref|ZP_13221560.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus IS-111]
gi|418871742|ref|ZP_13426111.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus IS-125]
gi|418904241|ref|ZP_13458280.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1770]
gi|418906845|ref|ZP_13460868.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIGC345D]
gi|418912534|ref|ZP_13466512.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG547]
gi|418926320|ref|ZP_13480217.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG2018]
gi|418929254|ref|ZP_13483139.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1612]
gi|418934900|ref|ZP_13488718.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIGC128]
gi|418949236|ref|ZP_13501493.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus IS-157]
gi|418955355|ref|ZP_13507297.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus IS-189]
gi|418988994|ref|ZP_13536663.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1835]
gi|419773944|ref|ZP_14299928.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CO-23]
gi|421150658|ref|ZP_15610313.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|422744277|ref|ZP_16798244.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus MRSA177]
gi|422747060|ref|ZP_16800985.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus MRSA131]
gi|424785865|ref|ZP_18212661.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus aureus CN79]
gi|440708420|ref|ZP_20889085.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21282]
gi|440735345|ref|ZP_20914952.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|443639368|ref|ZP_21123379.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21196]
gi|448741053|ref|ZP_21723025.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus KT/314250]
gi|448744740|ref|ZP_21726623.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus KT/Y21]
gi|38604904|sp|Q8NVT1.1|PCRA_STAAW RecName: Full=ATP-dependent DNA helicase PcrA
gi|68605626|sp|Q6G828.1|PCRA_STAAS RecName: Full=ATP-dependent DNA helicase PcrA
gi|81694154|sp|Q5HEL7.1|PCRA_STAAC RecName: Full=ATP-dependent DNA helicase PcrA
gi|110282982|sp|Q53727.3|PCRA_STAA8 RecName: Full=ATP-dependent DNA helicase PcrA
gi|21205016|dbj|BAB95711.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
MW2]
gi|49245167|emb|CAG43633.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57284842|gb|AAW36936.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus COL]
gi|87126433|gb|ABD20947.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|87203362|gb|ABD31172.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|150374855|dbj|BAF68115.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
str. Newman]
gi|160368937|gb|ABX29908.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|253726569|gb|EES95298.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|257861271|gb|EEV84083.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A5948]
gi|269941377|emb|CBI49774.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
TW20]
gi|282593155|gb|EFB98154.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9765]
gi|294823591|gb|EFG40018.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9754]
gi|296886425|gb|EFH25354.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|300885786|gb|EFK80993.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus TCH70]
gi|304342328|gb|EFM08220.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|315196225|gb|EFU26580.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CGS01]
gi|320139714|gb|EFW31583.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus MRSA131]
gi|320142369|gb|EFW34183.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus MRSA177]
gi|329314582|gb|AEB88995.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp.
aureus T0131]
gi|329728640|gb|EGG65070.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21189]
gi|329731448|gb|EGG67811.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21193]
gi|334267618|gb|EGL86076.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21305]
gi|341849769|gb|EGS90906.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21259]
gi|365165468|gb|EHM57254.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21209]
gi|365171901|gb|EHM62649.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21178]
gi|365236150|gb|EHM77051.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21334]
gi|365245172|gb|EHM85821.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21232]
gi|371985081|gb|EHP02169.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21283]
gi|374363806|gb|AEZ37911.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus VC40]
gi|374395082|gb|EHQ66356.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21343]
gi|375019204|gb|EHS12765.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus IS-24]
gi|375025449|gb|EHS18853.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus IS-91]
gi|375025964|gb|EHS19355.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus IS-88]
gi|375033493|gb|EHS26678.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus IS-111]
gi|375367857|gb|EHS71795.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus IS-125]
gi|375369477|gb|EHS73355.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus IS-157]
gi|375371209|gb|EHS74996.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus IS-189]
gi|377693710|gb|EHT18079.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1114]
gi|377716128|gb|EHT40312.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1835]
gi|377721269|gb|EHT45407.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG547]
gi|377736939|gb|EHT60952.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1612]
gi|377740321|gb|EHT64318.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1770]
gi|377741472|gb|EHT65460.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG2018]
gi|377762313|gb|EHT86180.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIGC345D]
gi|377769382|gb|EHT93152.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIGC128]
gi|383972216|gb|EID88264.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CO-23]
gi|394329353|gb|EJE55462.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|421955834|gb|EKU08168.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus aureus CN79]
gi|436430714|gb|ELP28072.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|436504943|gb|ELP40907.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21282]
gi|443407179|gb|ELS65739.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21196]
gi|445548161|gb|ELY16415.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus KT/314250]
gi|445561940|gb|ELY18126.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus KT/Y21]
Length = 730
Score = 254 bits (650), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 218/725 (30%), Positives = 344/725 (47%), Gaps = 117/725 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +N +Q EA PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I K+ M G ++ L
Sbjct: 123 D---VLKNENI-DSKKFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTPA+ +K ++ A + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV + YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 203 PEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF KD+ I L +NYRST+ I+ AA+ +I++N +R + K + T N++G KI E
Sbjct: 263 ILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + F+I +I++H NG Y +AILYR +V + F + +P+ +
Sbjct: 322 AMTERDEAEFVIREIMKHQRNGK----KYQDMAILYRTNAQSRVLEETFMKSNMPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR + ++K+
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINV--------PKRGVGPSSVEKVQNYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + A G K+ +TQ + L E+I L++ + + I + + V
Sbjct: 430 LQNNISMFDALGEADFIGLSKK--VTQ--ECLNFYELIQSLIKEQEFLE--IHEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
QK + +L +N L S + L ++ +F+S E N +++
Sbjct: 484 QKSGYRE----------MLERENTLES--RSRLENIDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E +T EN VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEADT----------ENGVTLMTMHSAKGLEFPIVFIMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ +E ++EERR+ YVA+TRA + L+I + M+ Q PSRFLKEIP
Sbjct: 579 IRAIK---SEDDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIP 635
Query: 937 HHLRE 941
L E
Sbjct: 636 ESLLE 640
>gi|153062|gb|AAA72091.1| helicase [Staphylococcus aureus]
gi|742312|prf||2009360A helicase
Length = 675
Score = 254 bits (650), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 218/725 (30%), Positives = 344/725 (47%), Gaps = 117/725 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +N +Q EA PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I K+ M G ++ L
Sbjct: 123 D---VLKNENI-DSKKFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTPA+ +K ++ A + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV + YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 203 PEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF KD+ I L +NYRST+ I+ AA+ +I++N +R + K + T N++G KI E
Sbjct: 263 ILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + F+I +I++H NG Y +AILYR +V + F + +P+ +
Sbjct: 322 AMTERDEAEFVIREIMKHQRNGK----KYQDMAILYRTNAQSRVLEETFMKSNMPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR + ++K+
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINV--------PKRGVGPSSVEKVQNYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + A G K+ +TQ + L E+I L++ + + I + + V
Sbjct: 430 LQNNISMFDALGEADFIGLSKK--VTQ--ECLNFYELIQSLIKEQEFLE--IHEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
QK + +L +N L S + L ++ +F+S E N +++
Sbjct: 484 QKSGYRE----------MLERENTLES--RSRLENIDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E +T EN VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEADT----------ENGVTLMTMHSAKGLEFPIVFIMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ +E ++EERR+ YVA+TRA + L+I + M+ Q PSRFLKEIP
Sbjct: 579 IRAIK---SEDDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIP 635
Query: 937 HHLRE 941
L E
Sbjct: 636 ESLLE 640
>gi|315660158|ref|ZP_07913015.1| ATP-dependent DNA helicase PcrA [Staphylococcus lugdunensis M23590]
gi|315494839|gb|EFU83177.1| ATP-dependent DNA helicase PcrA [Staphylococcus lugdunensis M23590]
Length = 730
Score = 254 bits (650), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 211/726 (29%), Positives = 350/726 (48%), Gaps = 121/726 (16%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAA 291
++ND+Q EA PLLI+AG GSGK G+SP NILA+TFT AA
Sbjct: 7 NMNDEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLNEKGVSPYNILAITFTNKAA 65
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEA 351
EM+ R+ +VG+ A + +STFHS +++ R A+++ F I Q+ I +
Sbjct: 66 KEMKQRVEQLVGEE-ASVIWMSTFHSMCVKILRRDADRIGIERNFTIIDPTDQKSVIKD- 123
Query: 352 VRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
+L+NE I K M ++S+ K N+
Sbjct: 124 --VLKNENIDSKK---------------------FEPRMFISAISNLK----NEL----- 151
Query: 412 DVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
KTP + +K +++ A + Y L ALD+ DLI +++L P+
Sbjct: 152 -------KTPDDAQKEANNYHEQMIATVYSGYQRQLSRNEALDFDDLIMTTIRLFERVPD 204
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFD 526
+ YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 205 ALEYYQNKFQYIHVDEYQDTNKAQYTLVKMLASKFKNLCVVGDSDQSIYGWRGADIQNIL 264
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
SF +D+ K I L +NYRST+ I+ AA+ +I++N +R + K + T N++G KI E
Sbjct: 265 SFEEDYPEAKSIYLEQNYRSTKTILNAANEVIKNNTER-KPKGLWTANTNGEKIKYYEAM 323
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
E + +++ ++++H NG SYG IAILYR +V + F + IP+ + G
Sbjct: 324 TERDEAEYVVREVMKHQRNGK----SYGDIAILYRTNAQSRVLEETFMKSNIPYTMVGGQ 379
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIRKC 703
FY +K ++ +++ LR DD +R+ KR I ++KI
Sbjct: 380 KFYDRKEIKDLLSYLRIVANSNDDISLQRIINV--------PKRGIGPSSVEKIQAYALQ 431
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREP--SISAVITSVANMVP 761
+ IS + A G K+ +TQG + +++ L++ + IS ++ +
Sbjct: 432 NNISMFDALSEADFIGLSKK--VTQG--CIQFYDLLQNLIKEQEFLEISEIVEEILEKTG 487
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
+ +LE+ ++ RS L+ ++ +F+S E N +++
Sbjct: 488 YRAMLEREQTIES------------RSRLE----NLDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E + ++ VT+ T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEAQI----------DDGVTMMTMHSAKGLEFPIVFLMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ ++ ++EERR+ YVA+TRA ++L+I M+ Q PSRFL+EIP
Sbjct: 579 IRAIK---SDDDHDMQEERRICYVAITRAEEQLYITRATSRMLFGRSQSNMPSRFLEEIP 635
Query: 937 HHLREV 942
L E+
Sbjct: 636 EDLLEL 641
>gi|15924895|ref|NP_372429.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
Mu50]
gi|15927479|ref|NP_375012.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
N315]
gi|148268378|ref|YP_001247321.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus JH9]
gi|150394440|ref|YP_001317115.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus JH1]
gi|156980221|ref|YP_001442480.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
Mu3]
gi|253316914|ref|ZP_04840127.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
str. CF-Marseille]
gi|255006692|ref|ZP_05145293.2| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257426037|ref|ZP_05602459.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
55/2053]
gi|257428710|ref|ZP_05605105.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
65-1322]
gi|257431320|ref|ZP_05607696.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
68-397]
gi|257434038|ref|ZP_05610389.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
E1410]
gi|257436942|ref|ZP_05612984.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus M876]
gi|257793289|ref|ZP_05642268.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9781]
gi|258408883|ref|ZP_05681165.1| ATP-dependent DNA helicase [Staphylococcus aureus A9763]
gi|258421013|ref|ZP_05683944.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9719]
gi|258422982|ref|ZP_05685881.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9635]
gi|258430015|ref|ZP_05688385.1| ATP-dependent DNA helicase [Staphylococcus aureus A9299]
gi|258443467|ref|ZP_05691809.1| ATP-dependent DNA helicase [Staphylococcus aureus A8115]
gi|258445325|ref|ZP_05693516.1| ATP-dependent DNA helicase [Staphylococcus aureus A6300]
gi|258447889|ref|ZP_05696023.1| ATP-dependent DNA helicase [Staphylococcus aureus A6224]
gi|258453322|ref|ZP_05701307.1| ATP-dependent DNA helicase [Staphylococcus aureus A5937]
gi|269203558|ref|YP_003282827.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus ED98]
gi|282894572|ref|ZP_06302800.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8117]
gi|282904536|ref|ZP_06312421.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus C160]
gi|282906309|ref|ZP_06314161.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282909225|ref|ZP_06317041.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282911530|ref|ZP_06319330.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282914703|ref|ZP_06322488.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus M899]
gi|282917252|ref|ZP_06325007.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus D139]
gi|282919740|ref|ZP_06327472.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus C427]
gi|282925144|ref|ZP_06332804.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus C101]
gi|282928078|ref|ZP_06335685.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A10102]
gi|283771055|ref|ZP_06343946.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
aureus H19]
gi|283958666|ref|ZP_06376112.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus A017934/97]
gi|293507780|ref|ZP_06667622.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 58-424]
gi|293510282|ref|ZP_06668988.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus M809]
gi|293539337|ref|ZP_06672016.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus M1015]
gi|295407286|ref|ZP_06817085.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8819]
gi|296275663|ref|ZP_06858170.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus MR1]
gi|297246189|ref|ZP_06930040.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8796]
gi|379021666|ref|YP_005298328.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus aureus subsp.
aureus M013]
gi|384548198|ref|YP_005737451.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
ED133]
gi|384550721|ref|YP_005739973.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp.
aureus JKD6159]
gi|384865111|ref|YP_005750470.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|384867123|ref|YP_005747319.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus TCH60]
gi|386729594|ref|YP_006195977.1| DNA helicase II [Staphylococcus aureus subsp. aureus 71193]
gi|386831494|ref|YP_006238148.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus HO
5096 0412]
gi|387151047|ref|YP_005742611.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus aureus
04-02981]
gi|387603238|ref|YP_005734759.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus ST398]
gi|387780971|ref|YP_005755769.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
LGA251]
gi|404479252|ref|YP_006710682.1| ATP-dependent DNA helicase [Staphylococcus aureus 08BA02176]
gi|415684812|ref|ZP_11449875.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
CGS00]
gi|415693399|ref|ZP_11455201.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
CGS03]
gi|417652304|ref|ZP_12302052.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21172]
gi|417799246|ref|ZP_12446392.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21310]
gi|417802315|ref|ZP_12449377.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21318]
gi|417890401|ref|ZP_12534476.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21200]
gi|417892734|ref|ZP_12536777.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21201]
gi|417903964|ref|ZP_12547795.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21269]
gi|418282399|ref|ZP_12895173.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21202]
gi|418306636|ref|ZP_12918413.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21194]
gi|418311448|ref|ZP_12922971.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21331]
gi|418316772|ref|ZP_12928205.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21340]
gi|418319973|ref|ZP_12931339.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus VCU006]
gi|418425094|ref|ZP_12998194.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
aureus VRS1]
gi|418428046|ref|ZP_13001039.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
aureus VRS2]
gi|418430916|ref|ZP_13003822.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
aureus VRS3a]
gi|418434775|ref|ZP_13006630.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
aureus VRS4]
gi|418437529|ref|ZP_13009313.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
aureus VRS5]
gi|418440438|ref|ZP_13012131.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
aureus VRS6]
gi|418443436|ref|ZP_13015031.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
aureus VRS7]
gi|418446507|ref|ZP_13017971.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
aureus VRS8]
gi|418449528|ref|ZP_13020903.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
aureus VRS9]
gi|418452355|ref|ZP_13023683.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
aureus VRS10]
gi|418455326|ref|ZP_13026579.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
aureus VRS11a]
gi|418458202|ref|ZP_13029395.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
aureus VRS11b]
gi|418565235|ref|ZP_13129646.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21264]
gi|418568238|ref|ZP_13132587.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21272]
gi|418596862|ref|ZP_13160406.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21342]
gi|418600801|ref|ZP_13164252.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21345]
gi|418640190|ref|ZP_13202423.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus IS-3]
gi|418662783|ref|ZP_13224316.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus IS-122]
gi|418875840|ref|ZP_13430092.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIGC93]
gi|418881593|ref|ZP_13435808.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1213]
gi|418884568|ref|ZP_13438754.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1769]
gi|418887269|ref|ZP_13441410.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1150]
gi|418889727|ref|ZP_13443856.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1524]
gi|418915036|ref|ZP_13469004.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIGC340D]
gi|418920142|ref|ZP_13474076.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIGC348]
gi|418932226|ref|ZP_13486056.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1750]
gi|418950932|ref|ZP_13503064.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus IS-160]
gi|418980111|ref|ZP_13527898.1| DNA helicase II [Staphylococcus aureus subsp. aureus DR10]
gi|418991839|ref|ZP_13539498.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1096]
gi|424767710|ref|ZP_18195025.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CM05]
gi|443635264|ref|ZP_21119395.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21236]
gi|54038823|sp|P64319.1|PCRA_STAAN RecName: Full=ATP-dependent DNA helicase PcrA
gi|54041649|sp|P64318.1|PCRA_STAAM RecName: Full=ATP-dependent DNA helicase PcrA
gi|13701698|dbj|BAB42991.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
N315]
gi|14247677|dbj|BAB58067.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
Mu50]
gi|147741447|gb|ABQ49745.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus JH9]
gi|149946892|gb|ABR52828.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus JH1]
gi|156722356|dbj|BAF78773.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
Mu3]
gi|257271180|gb|EEV03337.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
55/2053]
gi|257274354|gb|EEV05866.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
65-1322]
gi|257277969|gb|EEV08625.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
68-397]
gi|257280964|gb|EEV11108.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
E1410]
gi|257283731|gb|EEV13856.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus M876]
gi|257787261|gb|EEV25601.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9781]
gi|257840330|gb|EEV64792.1| ATP-dependent DNA helicase [Staphylococcus aureus A9763]
gi|257842961|gb|EEV67379.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9719]
gi|257846769|gb|EEV70784.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9635]
gi|257849609|gb|EEV73577.1| ATP-dependent DNA helicase [Staphylococcus aureus A9299]
gi|257851352|gb|EEV75292.1| ATP-dependent DNA helicase [Staphylococcus aureus A8115]
gi|257855843|gb|EEV78767.1| ATP-dependent DNA helicase [Staphylococcus aureus A6300]
gi|257858821|gb|EEV81690.1| ATP-dependent DNA helicase [Staphylococcus aureus A6224]
gi|257864530|gb|EEV87273.1| ATP-dependent DNA helicase [Staphylococcus aureus A5937]
gi|262075848|gb|ACY11821.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus ED98]
gi|282313102|gb|EFB43500.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus C101]
gi|282316378|gb|EFB46755.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus C427]
gi|282318879|gb|EFB49234.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus D139]
gi|282321417|gb|EFB51743.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus M899]
gi|282324539|gb|EFB54851.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282326793|gb|EFB57090.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282330506|gb|EFB60023.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282590142|gb|EFB95223.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A10102]
gi|282595092|gb|EFC00059.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus C160]
gi|282763059|gb|EFC03191.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8117]
gi|283459649|gb|EFC06740.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
aureus H19]
gi|283471176|emb|CAQ50387.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus ST398]
gi|283789706|gb|EFC28528.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus A017934/97]
gi|285817586|gb|ADC38073.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus aureus
04-02981]
gi|290919872|gb|EFD96941.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus M1015]
gi|291094843|gb|EFE25111.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 58-424]
gi|291466646|gb|EFF09166.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus M809]
gi|294967861|gb|EFG43891.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8819]
gi|297176896|gb|EFH36153.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8796]
gi|298695247|gb|ADI98469.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
ED133]
gi|302333570|gb|ADL23763.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp.
aureus JKD6159]
gi|312437628|gb|ADQ76699.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus TCH60]
gi|312830278|emb|CBX35120.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|315129285|gb|EFT85279.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
CGS03]
gi|315193435|gb|EFU23832.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
CGS00]
gi|329724791|gb|EGG61295.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21172]
gi|334274355|gb|EGL92676.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21310]
gi|334274799|gb|EGL93106.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21318]
gi|341848293|gb|EGS89458.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21269]
gi|341854875|gb|EGS95735.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21200]
gi|341857214|gb|EGS98036.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21201]
gi|344178073|emb|CCC88555.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
LGA251]
gi|359830975|gb|AEV78953.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus aureus subsp.
aureus M013]
gi|365170510|gb|EHM61508.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21202]
gi|365228704|gb|EHM69883.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus VCU006]
gi|365234104|gb|EHM75044.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21331]
gi|365240482|gb|EHM81256.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21340]
gi|365246430|gb|EHM86982.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21194]
gi|371974549|gb|EHO91877.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21264]
gi|371980003|gb|EHO97219.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21272]
gi|374396444|gb|EHQ67681.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21342]
gi|374400698|gb|EHQ71806.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21345]
gi|375015133|gb|EHS08798.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus IS-3]
gi|375035473|gb|EHS28595.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus IS-122]
gi|375374941|gb|EHS78552.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus IS-160]
gi|377711778|gb|EHT36005.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1750]
gi|377712341|gb|EHT36559.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1769]
gi|377721534|gb|EHT45665.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1096]
gi|377722137|gb|EHT46264.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1150]
gi|377730102|gb|EHT54176.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1213]
gi|377751534|gb|EHT75463.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG1524]
gi|377755064|gb|EHT78968.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIGC340D]
gi|377766054|gb|EHT89892.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIGC348]
gi|377769131|gb|EHT92908.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIGC93]
gi|379992142|gb|EIA13600.1| DNA helicase II [Staphylococcus aureus subsp. aureus DR10]
gi|384230887|gb|AFH70134.1| DNA helicase II [Staphylococcus aureus subsp. aureus 71193]
gi|385196886|emb|CCG16523.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus HO
5096 0412]
gi|387716876|gb|EIK04914.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
aureus VRS2]
gi|387717377|gb|EIK05392.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
aureus VRS3a]
gi|387717649|gb|EIK05649.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
aureus VRS1]
gi|387724017|gb|EIK11703.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
aureus VRS4]
gi|387726081|gb|EIK13665.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
aureus VRS5]
gi|387729232|gb|EIK16688.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
aureus VRS6]
gi|387733724|gb|EIK20897.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
aureus VRS8]
gi|387735544|gb|EIK22664.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
aureus VRS9]
gi|387735647|gb|EIK22758.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
aureus VRS7]
gi|387743105|gb|EIK29900.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
aureus VRS10]
gi|387743507|gb|EIK30298.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
aureus VRS11a]
gi|387745176|gb|EIK31937.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
aureus VRS11b]
gi|402348799|gb|EJU83773.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CM05]
gi|404440741|gb|AFR73934.1| ATP-dependent DNA helicase [Staphylococcus aureus 08BA02176]
gi|443409743|gb|ELS68234.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21236]
Length = 730
Score = 254 bits (650), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 218/725 (30%), Positives = 344/725 (47%), Gaps = 117/725 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +N +Q EA PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I K+ M G ++ L
Sbjct: 123 D---VLKNENI-DSKKFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTPA+ +K ++ A + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV + YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 203 PEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF KD+ I L +NYRST+ I+ AA+ +I++N +R + K + T N++G KI E
Sbjct: 263 ILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + F+I +I++H NG Y +AILYR +V + F + +P+ +
Sbjct: 322 AMTERDEAEFVIREIMKHQRNGK----KYQDMAILYRTNAQSRVLEETFMKSNMPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR + ++K+
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINV--------PKRGVGPSSVEKVQNYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + A G K+ +TQ + L E+I L++ + + I + + V
Sbjct: 430 LQNNISMFDALGEADFIGLSKK--VTQ--ECLNFYELIQSLIKEQEFLE--IHEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
QK + +L +N L S + L ++ +F+S E N +++
Sbjct: 484 QKSGYRE----------MLERENTLES--RSRLENIDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E +T EN VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEADT----------ENGVTLMTMHSAKGLEFPIVFIMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ +E ++EERR+ YVA+TRA + L+I + M+ Q PSRFLKEIP
Sbjct: 579 IRAIK---SEDDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIP 635
Query: 937 HHLRE 941
L E
Sbjct: 636 ESLLE 640
>gi|417902420|ref|ZP_12546286.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21266]
gi|341843126|gb|EGS84357.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21266]
Length = 730
Score = 254 bits (649), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 218/725 (30%), Positives = 344/725 (47%), Gaps = 117/725 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +N +Q EA PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I K+ M G ++ L
Sbjct: 123 D---VLKNENI-DSKKFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTPA+ +K ++ A + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV + YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 203 PEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF KD+ I L +NYRST+ I+ AA+ +I++N +R + K + T N++G KI E
Sbjct: 263 ILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSER-KPKGLWTVNTNGEKIHYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + F+I +I++H NG Y +AILYR +V + F + +P+ +
Sbjct: 322 AMTERDEAEFVIREIMKHQRNGK----KYQDMAILYRTNAQSRVLEETFMKSNMPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR + ++K+
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINV--------PKRGVGPSSVEKVQNYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + A G K+ +TQ + L E+I L++ + + I + + V
Sbjct: 430 LQNNISMFDALGEADFIGLSKK--VTQ--ECLNFYELIQSLIKEQEFLE--IHEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
QK + +L +N L S + L ++ +F+S E N +++
Sbjct: 484 QKSGYRE----------MLERENTLES--RSRLENIDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E +T EN VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEADT----------ENGVTLMTMHSAKGLEFPIVFIMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ +E ++EERR+ YVA+TRA + L+I + M+ Q PSRFLKEIP
Sbjct: 579 IRAIK---SEDDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIP 635
Query: 937 HHLRE 941
L E
Sbjct: 636 ESLLE 640
>gi|82751561|ref|YP_417302.1| ATP-dependent DNA helicase [Staphylococcus aureus RF122]
gi|82657092|emb|CAI81529.1| ATP-dependent DNA helicase [Staphylococcus aureus RF122]
Length = 730
Score = 254 bits (649), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 218/725 (30%), Positives = 344/725 (47%), Gaps = 117/725 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +N +Q EA PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I K+ M G ++ L
Sbjct: 123 D---VLKNENI-DSKKFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTPA+ +K ++ A + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV + YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 203 PEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF KD+ I L +NYRST+ I+ AA+ +I++N +R + K + T N++G KI E
Sbjct: 263 ILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + F+I +I++H NG Y +AILYR +V + F + +P+ +
Sbjct: 322 AMTERDEAEFVIREIMKHQRNGK----KYQDMAILYRTNAQSRVLEETFMKSNMPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR + ++K+
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINV--------PKRGVGPSSVEKVQNYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + A G K+ +TQ + L E+I L++ + + I + + V
Sbjct: 430 LQNNISMFDALGEADFIGLSKK--VTQ--ECLNFYELIQSLIKEQEFLE--IHEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
QK + +L +N L S + L ++ +F+S E N +++
Sbjct: 484 QKSGYRE----------MLERENTLES--RSRLENIDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E +T EN VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEADT----------ENGVTLMTMHSAKGLEFPIVFIMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ +E ++EERR+ YVA+TRA + L+I + M+ Q PSRFLKEIP
Sbjct: 579 IRAIK---SEDDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIP 635
Query: 937 HHLRE 941
L E
Sbjct: 636 ESLLE 640
>gi|221140358|ref|ZP_03564851.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|384862549|ref|YP_005745269.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|302751778|gb|ADL65955.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp.
aureus str. JKD6008]
Length = 730
Score = 254 bits (649), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 217/725 (29%), Positives = 344/725 (47%), Gaps = 117/725 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +N +Q EA PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A+ + +STFHS +++ R A+++ F I Q+ +
Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVVK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I K+ M G ++ L
Sbjct: 123 D---VLKNENI-DSKKFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTPA+ +K ++ A + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV + YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 203 PEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF KD+ I L +NYRST+ I+ AA+ +I++N +R + K + T N++G KI E
Sbjct: 263 ILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + F+I +I++H NG Y +AILYR +V + F + +P+ +
Sbjct: 322 AMTERDEAEFVIREIMKHQRNGK----KYQDMAILYRTNAQSRVLEETFMKSNMPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR + ++K+
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINV--------PKRGVGPSSVEKVQNYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + A G K+ +TQ + L E+I L++ + + I + + V
Sbjct: 430 LQNNISMFDALGEADFIGLSKK--VTQ--ECLNFYELIQSLIKEQEFLE--IHEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
QK + +L +N L S + L ++ +F+S E N +++
Sbjct: 484 QKSGYRE----------MLERENTLES--RSRLENIDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E +T EN VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEADT----------ENGVTLMTMHSAKGLEFPIVFIMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ +E ++EERR+ YVA+TRA + L+I + M+ Q PSRFLKEIP
Sbjct: 579 IRAIK---SEDDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIP 635
Query: 937 HHLRE 941
L E
Sbjct: 636 ESLLE 640
>gi|416840651|ref|ZP_11903857.1| ATP-dependent DNA helicase [Staphylococcus aureus O11]
gi|416846110|ref|ZP_11906390.1| ATP-dependent DNA helicase [Staphylococcus aureus O46]
gi|323439849|gb|EGA97565.1| ATP-dependent DNA helicase [Staphylococcus aureus O11]
gi|323443012|gb|EGB00633.1| ATP-dependent DNA helicase [Staphylococcus aureus O46]
Length = 730
Score = 254 bits (649), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 218/725 (30%), Positives = 344/725 (47%), Gaps = 117/725 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +N +Q EA PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I K+ M G ++ L
Sbjct: 123 D---VLKNENI-DSKKFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTPA+ +K ++ A + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV + YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 203 PEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF KD+ I L +NYRST+ I+ AA+ +I++N +R + K + T N++G KI E
Sbjct: 263 ILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + F+I +I++H NG Y +AILYR +V + F + +P+ +
Sbjct: 322 AMTERDEAEFVIREIMKHQRNGK----KYQDMAILYRTNAQSRVLEETFMKSNMPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR + ++K+
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINV--------PKRGVGPSSVEKVQNYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + A G K+ +TQ + L E+I L++ + + I + + V
Sbjct: 430 LQNNISMFDALGEADFIGLSKK--VTQ--ECLNFYELIQSLIKEQEFLE--IHEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
QK + +L +N L S + L ++ +F+S E N +++
Sbjct: 484 QKSGYRE----------MLERENTLES--RSRLENIDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E +T EN VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEADT----------ENGVTLMTMHSAKGLEFPIVFIMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ +E ++EERR+ YVA+TRA + L+I + M+ Q PSRFLKEIP
Sbjct: 579 IRAIK---SEDDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIP 635
Query: 937 HHLRE 941
L E
Sbjct: 636 ESLLE 640
>gi|406998057|gb|EKE16025.1| hypothetical protein ACD_11C00054G0015 [uncultured bacterium]
Length = 741
Score = 254 bits (649), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 223/743 (30%), Positives = 356/743 (47%), Gaps = 113/743 (15%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTF 286
S LQ LNDQQ +AA + +LI+AG GSGK GI P NILA+TF
Sbjct: 2 SDILQGLNDQQRDAAS-TVRGAVLIIAGAGSGKTKTLTHRVAYLIKEAGIRPQNILAVTF 60
Query: 287 TTAAASEMRDRIGSIVGKATAKEL-TISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQR 345
T AA EM++RI SI+G +L I TFHS +++ R+ EK+ S F I Q+
Sbjct: 61 TNKAAQEMKERIISILGSNNKYDLPIIGTFHSVCVKILRNEIEKMGYKSSFHIIDDQDQQ 120
Query: 346 RAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYM-RASLFMMNAMLFFSMSSFKLCQYN 404
I + ++ LE I+TD + A M++A +F
Sbjct: 121 SMIKKIMKELE---------INTDQFKPRAFLAAISNAKNEMIDAQIF------------ 159
Query: 405 KFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLST 464
+ASG +E A + Y L+ N LD+ D+I+ +VK+LS
Sbjct: 160 --------SEQASGYY--------EETVAKVFSKYQSQLKENNGLDFDDIINFTVKILSQ 203
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADIS 523
FP+V ++YQ+ +K I+VDE+QDT+ QY L+++L+ + + +VGDD QSI+ F GADI
Sbjct: 204 FPQVLEKYQNWFKYIMVDEYQDTNKAQYMLIRMLSQKYGNLCVVGDDWQSIYKFRGADIK 263
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
SF KD+ K I L +NYRST+ I++AA +I N+ R K + T+ G +I+
Sbjct: 264 NILSFEKDYPGAKIIHLEQNYRSTQIILDAAYGVISKNINRKD-KKLWTEKKEGHQIVSY 322
Query: 584 ECHNEDAQCAFIIDKILEHAS--NGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN 641
E +E + FI ++I + S N P +Y ILYR ++ + F R +P+
Sbjct: 323 EADDEQDEAGFIANEITKLISQKNVP---LTYKDFVILYRTNAQSRMLEEMFLRRSLPYR 379
Query: 642 -IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTI 700
I G+ FY++K V+ +I ++ D R+ E +R I +T+
Sbjct: 380 IIGGLKFYQRKEVKDLIGYVKLAYNLTDIVSLERIIN--------EPRRGIGS----ATL 427
Query: 701 RKCSFIS--AACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
S A D A + T + S L G+ + + S+ + R I + I SVA+
Sbjct: 428 NHWLSFSREAGIDPINASLKMTTENSSLNSGK--IDAVRKFSEFILRMYEIKSRI-SVAD 484
Query: 759 MVPQKYL---LEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVD 815
V + + EQ + + G++ E+ ++ L++ F S +F+
Sbjct: 485 FVEKIFKESGYEQMLLAEGTEGEVRWEN------VKELISVAQKFNSKEFSDV------- 531
Query: 816 QDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANET 875
+DK G F++ ++ Q +D SV + T+H +KGLE+ VF+ E
Sbjct: 532 EDKLGT------FLEEVALASDTDSINQAND---SVHMMTLHSAKGLEFPYVFIVGLEEG 582
Query: 876 EIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFL 932
+P +EEERRL+YV +TRA++K+++L+ + + Q+ PSRFL
Sbjct: 583 ILPHSRSLLSY-----EEMEEERRLMYVGITRAKEKIYLLFTRQRTIFGSTQVNPPSRFL 637
Query: 933 KEIPHHLREVQAEQSVQDQHENI 955
++IP HL + + Q+ N+
Sbjct: 638 EDIPAHLITQEINRETQNMESNL 660
>gi|418419305|ref|ZP_12992488.1| putative ATP-dependent DNA helicase PcrA [Mycobacterium abscessus
subsp. bolletii BD]
gi|364000935|gb|EHM22131.1| putative ATP-dependent DNA helicase PcrA [Mycobacterium abscessus
subsp. bolletii BD]
Length = 796
Score = 254 bits (649), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 221/745 (29%), Positives = 348/745 (46%), Gaps = 116/745 (15%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAA 291
LN QQ AA PLLIVAG GSGK +SP ILA+TFT AA
Sbjct: 15 GLNPQQ-RAAVAHQGAPLLIVAGAGSGKTAVLTRRIAYLLAARDVSPGQILAITFTNKAA 73
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAIIE 350
+EMR+R+G IV + + +STFHS +++ R+ A L S F IY RR +
Sbjct: 74 AEMRERVGRIVAN-RVQSMWVSTFHSSCVRILRNQASLLPGLNSNFSIYDSDDSRRLL-- 130
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
+++ + L +KR S +L T ++S+ K N+
Sbjct: 131 --QMIGRDMGLDIKRYSPRLLAT--------------------AISNLK----NELISPE 164
Query: 411 MDVAK-ASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
VA +G E R +I A + Y LR+ NALD+ DLI +V +L FP++
Sbjct: 165 QAVANLTAGGQEGELRGDLPQIVADVYGEYQRRLRAANALDFDDLIGETVAVLQQFPQIA 224
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLL-QILASH------------NRITIVGDDDQSIFS 516
Q Y+ ++ I+VDE+QDT+ QY L+ +++ +H + +VGD DQSI++
Sbjct: 225 QFYRRKFRHILVDEYQDTNHAQYVLVRELVGAHVDRTVDPDGPEPAELCVVGDADQSIYA 284
Query: 517 FNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSH 576
F GA I + F +D+ N K I L +NYRST+ I+ AA+S+I N R + K + TD+
Sbjct: 285 FRGATIRNIEEFERDYPNAKTILLEQNYRSTQNILSAANSVIAKNANRRE-KRLWTDSGD 343
Query: 577 GSKIIIKECHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
G I+ NE + +FI ID + + +YG +A+ YR + + + F
Sbjct: 344 GELIVGYVADNEHDEASFIAREIDGLFDRGD------ANYGDVAVFYRTNNNSRSLEEIF 397
Query: 634 RERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID 692
IP+ + GV FY +K +R I+A LR D RR+ ++ + D
Sbjct: 398 IRTGIPYKVVGGVRFYERKEIRDIVAYLRVLTNPGDAVSLRRILNT-------PRRGIGD 450
Query: 693 HIDKISTIRK----CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKL---VRR 745
+ + F A D K++ RS+ + + ++M+ ++ +R
Sbjct: 451 RAEACVAVHAETNGIGFGEALADAAAGKVAMLNSRSE----KAIAAFMDMLDQIRVTLRT 506
Query: 746 E-----PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDF 800
+ P I V+ +V N +Y LE + D +L DN L L++ +F
Sbjct: 507 DDPGALPDIGDVVEAVLNHTGYRYELENSS----DPQELARLDN-----LNELVSVAHEF 557
Query: 801 --LSTKFTAAKEEGNVDQDKKGC-INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIH 857
+ AA E+ VD + G L+AF++ +S + VT+ T+H
Sbjct: 558 SADAANAQAAGEDVPVDGEDVGAPPGSLEAFLERVS--LVADADELPESSAGVVTMMTLH 615
Query: 858 QSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV 917
+KGLE+ +VFV + P + V + EERRL YV +TRAR++L++
Sbjct: 616 TAKGLEFPVVFVTGWEDGMFPHMRALGDPV-----ELAEERRLAYVGITRARQRLYLSRA 670
Query: 918 MMDANW--QLLQP-SRFLKEIPHHL 939
+ ++W ++ P SRFL+EIP L
Sbjct: 671 KVRSSWGQPMMNPESRFLQEIPQEL 695
>gi|418636775|ref|ZP_13199114.1| ATP-dependent DNA helicase PcrA [Staphylococcus lugdunensis VCU139]
gi|374840471|gb|EHS03964.1| ATP-dependent DNA helicase PcrA [Staphylococcus lugdunensis VCU139]
Length = 730
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 211/726 (29%), Positives = 350/726 (48%), Gaps = 121/726 (16%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAA 291
++ND+Q EA PLLI+AG GSGK G+SP NILA+TFT AA
Sbjct: 7 NMNDEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLNEKGVSPYNILAITFTNKAA 65
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEA 351
EM+ R+ +VG+ A + +STFHS +++ R A+++ F I Q+ I +
Sbjct: 66 KEMKQRVEQLVGEE-ASVIWMSTFHSMCVKILRRDADRIGIERNFTIIDPTDQKSVIKD- 123
Query: 352 VRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
+L+NE I S M ++S+ K N+
Sbjct: 124 --VLKNENI---------------------DSKKFEPRMFISAISNLK----NEL----- 151
Query: 412 DVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
KTP + +K +++ A + Y L ALD+ DLI +++L P+
Sbjct: 152 -------KTPDDAQKEANNYHEQMIATVYSGYQRQLSRNEALDFDDLIMTTIRLFERVPD 204
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFD 526
+ YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 205 ALEYYQNKFQYIHVDEYQDTNKAQYTLVKMLASKFKNLCVVGDSDQSIYGWRGADIQNIL 264
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
SF +D+ K I L +NYRST+ I+ AA+ +I++N +R + K + T N++G KI E
Sbjct: 265 SFEEDYPEAKSIYLEQNYRSTKTILNAANEVIKNNTER-KPKGLWTANTNGEKIKYYEAM 323
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
E + +++ ++++H NG SYG IAILYR +V + F + IP+ + G
Sbjct: 324 TERDEAEYVVREVMKHQRNGK----SYGVIAILYRTNAQSRVLEETFMKSNIPYTMVGGQ 379
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIRKC 703
FY +K ++ +++ LR DD +R+ KR I ++KI
Sbjct: 380 KFYDRKEIKDLLSYLRIVANSNDDISLQRIINV--------PKRGIGPSSVEKIQAYALQ 431
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREP--SISAVITSVANMVP 761
+ IS + A G K+ +TQG + +++ L++ + IS ++ +
Sbjct: 432 NNISMFDALSEADFIGLSKK--VTQG--CIQFYDLLQNLIKEQEFLEISEIVEEILEKTG 487
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
+ +LE+ ++ RS L+ ++ +F+S E N +++
Sbjct: 488 YRAMLEREQTIES------------RSRLE----NLDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E + ++ VT+ T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEAQI----------DDGVTMMTMHSAKGLEFPIVFLMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ ++ ++EERR+ YVA+TRA ++L+I M+ Q PSRFL+EIP
Sbjct: 579 IRAIK---SDDDHDMQEERRICYVAITRAEEQLYITRATSRMLFGRSQSNMPSRFLEEIP 635
Query: 937 HHLREV 942
L E+
Sbjct: 636 EDLLEL 641
>gi|147864600|emb|CAN81552.1| hypothetical protein VITISV_028617 [Vitis vinifera]
Length = 332
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 160/346 (46%), Positives = 210/346 (60%), Gaps = 31/346 (8%)
Query: 1 MLKENVNVTTHLPVDQINESHRSRVSQNFRAAKPFLDRKRQRQ-AVDFDRQFPNKSRDSN 59
M KEN + ++I E R+R+SQNFRAAK L RKR R+ + +F + ++ D+N
Sbjct: 1 MSKENAAIN-----EEITEEQRTRISQNFRAAKALLARKRPRETSANFLNRLHQRNXDAN 55
Query: 60 SIPIESPDSITSVKRVPLAEIPVSTPSLQTINGVKSVVGEFSGISCV----------LND 109
I E+ ++KR+PLAE+ ++TPS + G K+ GE SC ++D
Sbjct: 56 RI--ETLAQAENIKRLPLAEVSINTPSPFSKKGFKTTDGECEKSSCSGGITINGSKSVHD 113
Query: 110 LSNERTNGVPLDISDPFI-----TPIKQPEFFNMSESFSMPSPLDDDFDDSILQEIDAIC 164
R GVPL D FI TP+K ++ +S + LDDD +SIL+EIDA+C
Sbjct: 114 GLCVRAVGVPL--VDGFILDSSETPMKGKVCPSVGDSLMSTNILDDDLCESILEEIDALC 171
Query: 165 E-KSAAKDVRKAQNSGIYEETHQNDNSCTHLNASLESVTTNENIRMDISMDLAGDMKSSM 223
E KSAAK + NS I E+ + +++ SV + + + L GD+ S
Sbjct: 172 EQKSAAKTEGQCPNSXISMESQFRVKNGGKDSSNWGSVDAEKFLLTASMLRLEGDLNSGA 231
Query: 224 EKTDTIQTIKTQNMPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKGISPSNILA 283
E Q + +MPD YSKYLQSLND Q EAAC D+S PL+IVAGPGSGKGISPSNILA
Sbjct: 232 E-----QAAQPASMPDXYSKYLQSLNDTQREAACSDISIPLMIVAGPGSGKGISPSNILA 286
Query: 284 MTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEK 329
MTFTTAAASEM RI ++ GK TAKE+T+STFHSF+LQLCRSHAEK
Sbjct: 287 MTFTTAAASEMSGRIAAVAGKETAKEVTVSTFHSFALQLCRSHAEK 332
>gi|418561138|ref|ZP_13125635.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21252]
gi|418994617|ref|ZP_13542251.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG290]
gi|371969613|gb|EHO87053.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21252]
gi|377743230|gb|EHT67213.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus CIG290]
Length = 730
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 218/725 (30%), Positives = 344/725 (47%), Gaps = 117/725 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +N +Q EA PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I K+ M G ++ L
Sbjct: 123 D---VLKNENI-DSKKFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTPA+ +K ++ A + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV + YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 203 PEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF KD+ I L +NYRST+ I+ AA+ +I++N +R + K + T N++G KI E
Sbjct: 263 ILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + F+I +I++H NG Y +AILYR +V + F + +P+ +
Sbjct: 322 AMTERDEAEFVIREIMKHQRNGK----KYQDMAILYRTNAQSRVLEETFMKSNMPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR + ++K+
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANCNDDISLQRIINV--------PKRGVGPSSVEKVQNYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + A G K+ +TQ + L E+I L++ + + I + + V
Sbjct: 430 LQNNISMFDALGEADFIGLSKK--VTQ--ECLNFYELIQSLIKEQEFLE--IHEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
QK + +L +N L S + L ++ +F+S E N +++
Sbjct: 484 QKSGYRE----------MLERENTLES--RSRLENIDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E +T EN VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEADT----------ENGVTLMTMHSAKGLEFPIVFIMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ +E ++EERR+ YVA+TRA + L+I + M+ Q PSRFLKEIP
Sbjct: 579 IRAIK---SEDDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIP 635
Query: 937 HHLRE 941
L E
Sbjct: 636 ESLLE 640
>gi|253734985|ref|ZP_04869150.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
TCH130]
gi|253727167|gb|EES95896.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
TCH130]
Length = 730
Score = 254 bits (648), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 218/725 (30%), Positives = 343/725 (47%), Gaps = 117/725 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +N +Q EA PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I K+ M G ++ L
Sbjct: 123 D---VLKNENI-DSKKFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTPA+ +K ++ A + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV + YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 203 PEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF KD+ I L +NYRST+ I+ AA +I++N +R + K + T N++G KI E
Sbjct: 263 ILSFEKDYPEANTIFLEQNYRSTKTILNAAHEVIKNNSER-KPKGLWTANTNGEKIHYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + F+I +I++H NG Y +AILYR +V + F + +P+ +
Sbjct: 322 AMTERDEAEFVIREIMKHQRNGK----KYQDMAILYRTNAQSRVLEETFMKSNMPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR + ++K+
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINV--------PKRGVGPSSVEKVQNYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + A G K+ +TQ + L E+I L++ + + I + + V
Sbjct: 430 LQNNISMFDALGEADFIGLSKK--VTQ--ECLNFYELIQSLIKEQEFLE--IHEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
QK + +L +N L S + L ++ +F+S E N +++
Sbjct: 484 QKSGYRE----------MLERENTLES--RSRLENIDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E +T EN VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEADT----------ENGVTLMTMHSAKGLEFPIVFIMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ +E ++EERR+ YVA+TRA + L+I + M+ Q PSRFLKEIP
Sbjct: 579 IRAIK---SEDDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIP 635
Query: 937 HHLRE 941
L E
Sbjct: 636 ESLLE 640
>gi|297590041|ref|ZP_06948681.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus MN8]
gi|297577169|gb|EFH95883.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus MN8]
Length = 739
Score = 254 bits (648), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 218/725 (30%), Positives = 344/725 (47%), Gaps = 117/725 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +N +Q EA PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I K+ M G ++ L
Sbjct: 123 D---VLKNENI-DSKKFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTPA+ +K ++ A + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV + YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 203 PEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF KD+ I L +NYRST+ I+ AA+ +I++N +R + K + T N++G KI E
Sbjct: 263 ILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + F+I +I++H NG Y +AILYR +V + F + +P+ +
Sbjct: 322 AMTERDEAEFVIREIMKHQRNGK----KYQDMAILYRTNAQSRVLEETFMKSNMPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR + ++K+
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINV--------PKRGVGPSSVEKVQNYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + A G K+ +TQ + L E+I L++ + + I + + V
Sbjct: 430 LQNNISMFDALGEADFIGLSKK--VTQ--ECLNFYELIQSLIKEQEFLE--IHEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
QK + +L +N L S + L ++ +F+S E N +++
Sbjct: 484 QKSGYRE----------MLERENTLES--RSRLENIDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E +T EN VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEADT----------ENGVTLMTMHSAKGLEFPIVFIMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ +E ++EERR+ YVA+TRA + L+I + M+ Q PSRFLKEIP
Sbjct: 579 IRAIK---SEDDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIP 635
Query: 937 HHLRE 941
L E
Sbjct: 636 ESLLE 640
>gi|319955254|ref|YP_004166521.1| uvrd/rep helicase [Cellulophaga algicola DSM 14237]
gi|319423914|gb|ADV51023.1| UvrD/REP helicase [Cellulophaga algicola DSM 14237]
Length = 794
Score = 254 bits (648), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 220/736 (29%), Positives = 341/736 (46%), Gaps = 112/736 (15%)
Query: 231 TIKTQNMPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GI 276
T+ + + KY+ LND Q A PL+++AG GSGK GI
Sbjct: 9 TVPKNSNKKQLEKYINQLNDAQ-RAPVLHKDGPLIVIAGAGSGKTRVLTYRIAYLMSLGI 67
Query: 277 SPSNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEF 336
NILA+TFT AA EM+ RI +IVG A AK L + TFHS ++ R +KL S F
Sbjct: 68 DSFNILALTFTNKAAREMKARIAAIVGNAEAKNLMMGTFHSVFARILRYDGDKLGYPSNF 127
Query: 337 LIYGHGQQRRAIIEAVRLLENEKIL-----VVKRISTDMLTTDGHFGYMRASLFMMNAML 391
IY +R I ++ + +K + V RIS+ + SL + A
Sbjct: 128 TIYDTQDSQRLIASIIKEMGLDKDVYKYKQVQNRISS-----------YKNSLITVRA-- 174
Query: 392 FFSMSSFKLCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDY 451
+F+ + + E D M K P ++GD I +NY A+D+
Sbjct: 175 YFNDAELQ-------EADAM------AKRP----RMGD-----IYQNYVDRCFKAGAMDF 212
Query: 452 HDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDD 510
DL+ + +LL+ FPEV +YQD ++ I+VDE+QDT+ QY +++ L+ I +VGDD
Sbjct: 213 DDLLLRTNELLNKFPEVLAKYQDRFRYILVDEYQDTNHSQYLIIKALSDKFQNICVVGDD 272
Query: 511 DQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNV 570
QSI+SF GA+IS +F+KD+ N RL +NYRSTR IV AA+S+I N + + K V
Sbjct: 273 AQSIYSFRGANISNILNFQKDYDNVVMYRLEQNYRSTRNIVNAANSIIAKNTNQLE-KVV 331
Query: 571 QTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQ 630
TDN G I + + + F+ I E N S GS A+LYR + +
Sbjct: 332 WTDNDDGPAIKVHRSTTDAEEGRFVAGSIFE---NRMQHQMSNGSFAVLYRTNSQSRAIE 388
Query: 631 TAFRERKIPFNIHG-VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR 689
A R+R IP+ I+G ++FY++K ++ ++ LR + D+ E KR
Sbjct: 389 DALRKRDIPYRIYGGLSFYQRKEIKDVLYYLRLVINPKDE---------------EALKR 433
Query: 690 VIDHIDKISTIRKCSFISAACDIFGAKISGTFKRS-----QLTQG--RKVLLTLEMISKL 742
VI+ + + ++ A + +G I + ++ G RK++ MI
Sbjct: 434 VINFPARGIGMSTLDKLTVAANHYGRSIFEVIENLDRINLKINAGTKRKLVDFTNMIKGF 493
Query: 743 VRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLS 802
+++A S LLE + +G + DN ++ LL + DF+
Sbjct: 494 QIMNETVNAFEISEHVTKKTGILLEFKKDGTPEG--IARMDN-----IEELLNGIKDFVE 546
Query: 803 TKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGL 862
+ GN+ + ++ + +++ V L TIH +KGL
Sbjct: 547 GQKEVVDATGNISE--------------FLEDVALATDLDNDTGDDDRVALMTIHLAKGL 592
Query: 863 EWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDAN 922
E+ V++ E P +G + +EEERRL YVA+TRA K+ ++ Y
Sbjct: 593 EFPHVYIVGMEEDLFP-----SGMSMSTRSELEEERRLFYVAITRAEKQAYLTYTQNRYR 647
Query: 923 WQLL---QPSRFLKEI 935
W L +PSRFL+EI
Sbjct: 648 WGKLIDAEPSRFLEEI 663
>gi|296141008|ref|YP_003648251.1| ATP-dependent DNA helicase PcrA [Tsukamurella paurometabola DSM
20162]
gi|296029142|gb|ADG79912.1| ATP-dependent DNA helicase PcrA [Tsukamurella paurometabola DSM
20162]
Length = 802
Score = 254 bits (648), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 216/736 (29%), Positives = 338/736 (45%), Gaps = 117/736 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LN QQ +AA +PLLIVAG GSGK G+ P ILA+TFT
Sbjct: 31 LEGLNPQQ-KAAVLHEGSPLLIVAGAGSGKTAVLTRRIAYLLRARGMHPGQILAITFTNK 89
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EMR+R+ ++G A + +STFHS +++ R+ A L S F IY RR +
Sbjct: 90 AAAEMRERVAQLIGP-RANTMWVSTFHSTCVRILRAQAGLLPGMNSNFSIYDADDSRRLL 148
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
++VK + D A F A+ Q + +
Sbjct: 149 T-----------MIVKEMGLD------------AKKFAPRALA---------TQISNLKN 176
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILE---NYNGILRSCNALDYHDLISCSVKLLSTF 465
+ + A+ A+ K G+ + E Y LRS NA D+ DLI +V LL +
Sbjct: 177 ELIGPEDAA----ADAAKTGEPFAVTVAEVFGTYQARLRSANAFDFDDLIGETVGLLQSH 232
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA---------SHNRITIVGDDDQSIFS 516
P V Q Y+ ++ ++VDE+QDT+ QY L++ L + + + +VGD DQSI++
Sbjct: 233 PNVAQYYRRRFRHVLVDEYQDTNHAQYILVRELVGLEEDEDGVTPSELCVVGDADQSIYA 292
Query: 517 FNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSH 576
F GA I + F +DF N + I L +NYRST+ I+ AA+++I N R + K + TD
Sbjct: 293 FRGATIRNIEEFERDFPNAETILLEQNYRSTQTILSAANAVISRNAGRRE-KKLWTDQGD 351
Query: 577 GSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRER 636
G+ I NE + +F++ +I + NG Y +A+ YR + +V + F
Sbjct: 352 GALITGYVADNEHDEASFVVSEIDALSDNG----IKYSDVAVFYRTNTAARVLEEVFIRH 407
Query: 637 KIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHID 695
+P+ + GV FY +K VR ++A LR D +R+ ++ + D
Sbjct: 408 GVPYKVVGGVRFYERKEVRDLVAYLRAIDNPNDTVSLQRIVNT-------PRRGIGDRAQ 460
Query: 696 KISTIRK----CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRR-----E 746
T+ +F A D ++ RS R + T + +RR E
Sbjct: 461 ACLTVHAENHGTNFGGAIADAVEGGVAMLNPRS-----RNAIATFSGLMTELRRIADDDE 515
Query: 747 PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFT 806
I ++ +V + LE + DG +L N + + ++ D TD ++ +
Sbjct: 516 SDIGDLLDAVVEKTGYRAELEGSSDPQ-DGARLDNIEELISVAREFSAQDFTDVVADE-- 572
Query: 807 AAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDI 866
A E G+ L AF++ +S D+ VTL T+H +KGLE+ +
Sbjct: 573 GAPEPGS-----------LAAFLERVS--LVADADQVPDDDAGVVTLMTLHTAKGLEFPV 619
Query: 867 VFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW--Q 924
VFV + + P + G NE + EERRL YV +TRAR++L++ M+ + W
Sbjct: 620 VFVTGWEDGQFPHMRAL-GDENE----LAEERRLAYVGITRARERLYVSRAMIRSTWGDP 674
Query: 925 LLQP-SRFLKEIPHHL 939
+ P SRFL EIP HL
Sbjct: 675 MQNPESRFLAEIPQHL 690
>gi|289550376|ref|YP_003471280.1| ATP-dependent DNA helicase UvrD [Staphylococcus lugdunensis
HKU09-01]
gi|289179908|gb|ADC87153.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus lugdunensis
HKU09-01]
Length = 746
Score = 253 bits (647), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 210/726 (28%), Positives = 347/726 (47%), Gaps = 121/726 (16%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAA 291
++ND+Q EA PLLI+AG GSGK G+SP NILA+TFT AA
Sbjct: 7 NMNDEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLNEKGVSPYNILAITFTNKAA 65
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEA 351
EM+ R+ +VG+ A + +STFHS +++ R A+++ F I Q+ I +
Sbjct: 66 KEMKQRVEQLVGEE-ASVIWMSTFHSMCVKILRRDADRIGIERNFTIIDPTDQKSVIKD- 123
Query: 352 VRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
+L+NE I K +F S +
Sbjct: 124 --VLKNENIDSKK----------------------FEPRMFIS---------------AI 144
Query: 412 DVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
K KTP + +K +++ A + Y L ALD+ DLI +++L P+
Sbjct: 145 SNLKNELKTPDDAQKEANNYHEQMIATVYSGYQRQLSRNEALDFDDLIMTTIRLFERVPD 204
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFD 526
+ YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 205 ALEYYQNKFQYIHVDEYQDTNKAQYTLVKMLASKFKNLCVVGDSDQSIYGWRGADIQNIL 264
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
SF +D+ K I L +NYRST+ I+ AA+ +I++N +R + K + T N++G KI E
Sbjct: 265 SFEEDYPEAKSIYLEQNYRSTKTILNAANEVIKNNTER-KPKGLWTANTNGEKIKYYEAM 323
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
E + +++ ++++H NG SYG IAILYR +V + F + IP+ + G
Sbjct: 324 TERDEAEYVVREVMKHQRNGK----SYGDIAILYRTNAQSRVLEETFMKSNIPYTMVGGQ 379
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIRKC 703
FY +K ++ +++ LR DD +R+ KR I ++KI
Sbjct: 380 KFYDRKEIKDLLSYLRIVANSNDDISLQRIINV--------PKRGIGPSSVEKIQAYALQ 431
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREP--SISAVITSVANMVP 761
+ IS + A G K+ +TQG + +++ L++ + IS ++ +
Sbjct: 432 NNISMFDALSEADFIGLSKK--VTQG--CIQFYDLLQNLIKEQEFLEISEIVEEILEKTG 487
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
+ +LE+ ++ RS L+ ++ +F+S E N +++
Sbjct: 488 YRAMLEREQTIES------------RSRLE----NLDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E + ++ VT+ T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEAQI----------DDGVTMMTMHSAKGLEFPIVFLMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ ++ ++EERR+ YVA+TRA ++L+I M+ Q PSRFL+EIP
Sbjct: 579 IRAIK---SDDDHDMQEERRICYVAITRAEEQLYITRATSRMLFGRSQSNMPSRFLEEIP 635
Query: 937 HHLREV 942
L E+
Sbjct: 636 EDLLEL 641
>gi|408423956|emb|CCJ11367.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus ST228]
gi|408425945|emb|CCJ13332.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus ST228]
gi|408427933|emb|CCJ15296.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus ST228]
gi|408429922|emb|CCJ27087.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus ST228]
gi|408431908|emb|CCJ19223.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
aureus ST228]
gi|408433903|emb|CCJ21188.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
aureus ST228]
gi|408435895|emb|CCJ23155.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
aureus ST228]
gi|408437878|emb|CCJ25121.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
aureus ST228]
Length = 723
Score = 253 bits (647), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 217/722 (30%), Positives = 343/722 (47%), Gaps = 117/722 (16%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
+N +Q EA PLLI+AG GSGK +SP N+LA+TFT AA
Sbjct: 1 MNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAAR 59
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ +VG A+ + +STFHS +++ R A+++ F I Q+ I +
Sbjct: 60 EMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKD-- 116
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+L+NE I K+ M G ++ L
Sbjct: 117 -VLKNENI-DSKKFEPRMFI--GAISNLKNEL---------------------------- 144
Query: 413 VAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
KTPA+ +K ++ A + Y L ALD+ DLI ++ L PEV
Sbjct: 145 ------KTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERVPEV 198
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDS 527
+ YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI S
Sbjct: 199 LEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQNILS 258
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KD+ I L +NYRST+ I+ AA+ +I++N +R + K + T N++G KI E
Sbjct: 259 FEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYEAMT 317
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
E + F+I +I++H NG Y +AILYR +V + F + +P+ + G
Sbjct: 318 ERDEAEFVIREIMKHQRNGK----KYQDMAILYRTNAQSRVLEETFMKSNMPYTMVGGQK 373
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIRKCS 704
FY +K ++ +++ LR DD +R+ KR + ++K+ +
Sbjct: 374 FYDRKEIKDLLSYLRIIANSNDDISLQRIINV--------PKRGVGPSSVEKVQNYALQN 425
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKY 764
IS + A G K+ +TQ + L E+I L++ + + I + + V QK
Sbjct: 426 NISMFDALGEADFIGLSKK--VTQ--ECLNFYELIQSLIKEQEFLE--IHEIVDEVLQKS 479
Query: 765 LLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINV 824
+ +L +N L S + L ++ +F+S E N +++ IN
Sbjct: 480 GYRE----------MLERENTLES--RSRLENIDEFMS---VPKDYEENTPLEEQSLINF 524
Query: 825 LK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
L + + I E +T EN VTL T+H +KGLE+ IVF+ E+ P +
Sbjct: 525 LTDLSLVADIDEADT----------ENGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRA 574
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHHL 939
+E ++EERR+ YVA+TRA + L+I + M+ Q PSRFLKEIP L
Sbjct: 575 IK---SEDDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPESL 631
Query: 940 RE 941
E
Sbjct: 632 LE 633
>gi|417897543|ref|ZP_12541473.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21235]
gi|341839450|gb|EGS81031.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21235]
Length = 730
Score = 253 bits (647), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 218/725 (30%), Positives = 343/725 (47%), Gaps = 117/725 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +N +Q EA PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I K+ M G ++ L
Sbjct: 123 D---VLKNENI-DSKKFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTPA+ +K ++ A + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV + YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 203 PEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF KD+ I L +NYRST+ I+ AA+ +I++N +R + K + T N++G KI E
Sbjct: 263 ILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + F+I +I++H NG Y +AILYR +V + F + +P+ +
Sbjct: 322 AMTERDEAEFVIREIMKHQRNGK----KYQDMAILYRTNAQSRVLEETFMKSNMPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR + ++K+
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINV--------PKRGVGPSSVEKVQNYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + A G K +TQ + L E+I L++ + + I + + V
Sbjct: 430 LQNNISMFDALGEADFIGLSK--NVTQ--ECLNFYELIQSLIKEQEFLE--IHEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
QK + +L +N L S + L ++ +F+S E N +++
Sbjct: 484 QKSGYRE----------MLERENTLES--RSRLENIDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E +T EN VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEADT----------ENGVTLMTMHSAKGLEFPIVFIMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ +E ++EERR+ YVA+TRA + L+I + M+ Q PSRFLKEIP
Sbjct: 579 IRAIK---SEDDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIP 635
Query: 937 HHLRE 941
L E
Sbjct: 636 ESLLE 640
>gi|383829025|ref|ZP_09984114.1| ATP-dependent DNA helicase PcrA [Saccharomonospora xinjiangensis
XJ-54]
gi|383461678|gb|EID53768.1| ATP-dependent DNA helicase PcrA [Saccharomonospora xinjiangensis
XJ-54]
Length = 831
Score = 253 bits (647), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 221/754 (29%), Positives = 338/754 (44%), Gaps = 108/754 (14%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTF 286
++ L LN Q AA PLL+VAG GSGK + P ILA+TF
Sbjct: 35 AELLDDLNPAQ-RAAVEHHGRPLLVVAGAGSGKTRVLTRRIAYLLAARDVHPGQILAITF 93
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR 346
T AA+EMR+R+ +VG+ A + +STFHS ++L R A+ LE TS F IY RR
Sbjct: 94 TNKAAAEMRERVAGLVGR-RAGAMWVSTFHSMCVRLLRREAKTLEMTSNFSIYDADDSRR 152
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
+ R L+ L KR S LT H + L + F
Sbjct: 153 LMTLVGRDLD----LDPKRYSARALTA--HVSNWKNELI--------DPEDAAASAASDF 198
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
ER D + Y L A+D+ DLI +V+L FP
Sbjct: 199 ERKAADAYR----------------------EYQRRLAQAGAMDFDDLIMRTVELFQAFP 236
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA---------SHNRITIVGDDDQSIFSF 517
+V + Y+ ++ ++VDE+QDT+ QY+L++ L + + + +VGD DQSI++F
Sbjct: 237 DVAEHYRRRFRHVLVDEYQDTNHAQYTLVRELVGTAPTETGVAPSELCVVGDADQSIYAF 296
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GA I + F +DF + + I L +NYRST+ I+ AA+++I N R K + TD G
Sbjct: 297 RGATIRNIEEFERDFPDARTILLEQNYRSTQTILSAANAVIARNPGRRD-KRLWTDAGDG 355
Query: 578 SKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERK 637
+I+ NE + AF+ +I A G A +Y +A+ YR +VF+ F
Sbjct: 356 ERIVGYVADNEHDEAAFVAGEIDALADRGEA---TYSDVAVFYRTNNQSRVFEEIFIRLG 412
Query: 638 IPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDK 696
+P+ + GV FY +K VR +A LR D RR+ K+ + D +
Sbjct: 413 LPYRVVGGVRFYERKEVRDALAYLRVLANPEDTVSLRRILNV-------PKRGIGDRAEA 465
Query: 697 ISTI----RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV 752
+ + SF +A D +I RSQ G V L L+ + +LV ++ V
Sbjct: 466 VVATHAERERISFAAALRDAVEGRIPLLNTRSQKAVGGFVEL-LDGLRELVDEGADVADV 524
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
+ +V + + LE+ D +L N D L + + T+F T + E
Sbjct: 525 LEAVLDRTGYRAELEESKDPQ-DASRLENLDE-----LVTVAREFTEFAQTVLAESGAED 578
Query: 813 NVDQDKKGC--INVLKAFI---------DYISERETEHFRTQRHDNENSVTLTTIHQSKG 861
D+ + G L AF+ D I + ++ VTL T+H +KG
Sbjct: 579 AGDEPEAGVPEPGSLPAFLERVSLVADADSIPSPDGGADGADGGTDQGVVTLMTVHTAKG 638
Query: 862 LEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDA 921
LE+ +VF + P + A+ E + EERRL YVA+TRA+++L++ ++
Sbjct: 639 LEYPVVFCTGWEDGVFPHLR----ALGEP-KELAEERRLAYVAITRAQRRLYVSRALVRT 693
Query: 922 NWQLLQP-----SRFLKEIPHHLREVQAEQSVQD 950
W QP SRFL EIP L + + + +D
Sbjct: 694 AWG--QPMSNPASRFLDEIPEELLDWRRQAPSRD 725
>gi|295133070|ref|YP_003583746.1| PcrA-like UvrD/Rep family ATP-dependent DNA helicase [Zunongwangia
profunda SM-A87]
gi|294981085|gb|ADF51550.1| PcrA-like UvrD/Rep family ATP-dependent DNA helicase [Zunongwangia
profunda SM-A87]
Length = 773
Score = 253 bits (646), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 217/733 (29%), Positives = 343/733 (46%), Gaps = 131/733 (17%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
YL LND Q A + P++++AG GSGK GI NILA+TFT
Sbjct: 4 YLAELNDAQ-RAPTLQIDGPMIVIAGAGSGKTRVLTYRIAYMMSKGIDAFNILALTFTNK 62
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ RI IVG++ AK L + TFHS ++ R A+KL S F IY Q +++I
Sbjct: 63 AAREMQHRISQIVGRSEAKNLWMGTFHSVFAKILRFEADKLGYPSNFTIY-DTQDSQSVI 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFK---LCQYNKF 406
A I DM + Y + ++ +SS+K + F
Sbjct: 122 RA--------------IIKDMQLDKDVYKYKQ---------VYSRISSYKNSLITVKAYF 158
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
+ A A K P ++GD I + Y A+D+ DL+ + +LL+ FP
Sbjct: 159 NNPELMEADAMSKKP----RMGD-----IYQEYVQRCFKAGAMDFDDLLLKTNELLNRFP 209
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGF 525
EV Q+YQ+ ++ I+VDE+QDT+ QY +++ L+ I +VGDD QSI++F GA+I+
Sbjct: 210 EVLQKYQNRFRYILVDEYQDTNHSQYLIVKALSDKFQNICVVGDDAQSIYAFRGANINNI 269
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
+F+KD+ + RL +NYRST IV AA+S+I N + K V T N G KI++
Sbjct: 270 LNFQKDYDGVEMYRLEQNYRSTGNIVNAANSIIDKNQTKLD-KVVWTANDDGPKIVVNRL 328
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG- 644
+ + F+ I E N + G AILYR + + A R++ IP+ I+G
Sbjct: 329 LTDGEEGRFVASSIFE---NKMQQQMANGDFAILYRTNAQSRAMEDALRKKDIPYRIYGG 385
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCS 704
++FY++K ++ +++ LR + D+ E KRVI++ +
Sbjct: 386 LSFYQRKEIKDVLSYLRLLINPKDE---------------EALKRVINYPARGIGATTMD 430
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKY 764
+S A + +G I +VL L+ + +L + S + + NM+
Sbjct: 431 RLSIAANKYGKSIF------------EVLENLDHLPEL-KITKSTRTKLDNFVNMIKHFT 477
Query: 765 LLEQRA----VVDFDGGKL-----LNEDNDLRSV-----LQYLLADVTDFLSTKFTAAKE 810
+L Q A V D K L +D + ++ LL + DF+ + A
Sbjct: 478 ILAQNADAFTVADTVTKKTGLVQELKKDGTPEGIARIENIEELLNGIKDFVEEQKELADA 537
Query: 811 EGNVDQDKKGCINVLKAFIDYIS-----ERETEHFRTQRHDNENSVTLTTIHQSKGLEWD 865
G++ + F++ ++ +++TE +E+ V L TIH +KGLE+
Sbjct: 538 NGSIAE-----------FLEDVALATDMDKDTE--------DEDRVALMTIHLAKGLEFP 578
Query: 866 IVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQL 925
V++ E P N + +EEERRL YVA+TRA K+ F+ Y W
Sbjct: 579 YVYIVGMEEDLFPSAMSMNTR-----SELEEERRLFYVAVTRAEKQAFLTYTQSRYRWGK 633
Query: 926 L---QPSRFLKEI 935
L +PSRF++EI
Sbjct: 634 LVDAEPSRFIEEI 646
>gi|345001590|ref|YP_004804444.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. SirexAA-E]
gi|344317216|gb|AEN11904.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. SirexAA-E]
Length = 815
Score = 253 bits (645), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 218/723 (30%), Positives = 332/723 (45%), Gaps = 102/723 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN +Q AA +PLLIVAG GSGK G+ P ILA+TFT
Sbjct: 70 LDGLNTEQ-RAAVVHAGSPLLIVAGAGSGKTRVLTHRIAHLLAERGVHPGQILAITFTNK 128
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G +VG A + + TFHS +++ R ++ L TS F IY +R +
Sbjct: 129 AAGEMKERVGDLVGP-RANAMWVMTFHSACVRILRRESKLLGFTSSFSIYDAADSKRLMA 187
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R L+ L KR T + + + +
Sbjct: 188 LVCRDLD----LDPKRYPPKSFT----------------------------AKVSNLKNE 215
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+D +G+ F K + A Y LR NALD+ D+I +V LL FP+V
Sbjct: 216 LIDEETFAGQAADGFEKTLAQAYAL----YQARLREANALDFDDIIMTTVHLLQAFPDVA 271
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILA-------SHNRITIVGDDDQSIFSFNGADI 522
+ Y+ ++ ++VDE+QDT+ QY+L++ L + + +VGD DQSI++F GA I
Sbjct: 272 EHYRRRFRHVLVDEYQDTNHAQYTLVRELVGPAGEKDAPGELCVVGDADQSIYAFRGATI 331
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
F +D+ + I L +NYRST+ I+ AA+++I+ N R + KN+ T+ G++I
Sbjct: 332 RNILQFEEDYPDATTIMLEQNYRSTQTILSAANAVIERNESR-RPKNLWTNAGAGTRITG 390
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN- 641
E + FI D+I G A G +A+ YR +VF+ F +P+
Sbjct: 391 YVADTEHDEAQFIADEIDRLTDAGEAKA---GDVAVFYRTNAQSRVFEEIFIRVGLPYKV 447
Query: 642 IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
+ GV FY +K VR ++A LR D P RR+ + ++ R ID +S
Sbjct: 448 VGGVRFYERKEVRDVLAYLRVLANPEDTVPLRRILN---VPKRGIGDRAEAMIDALSLRE 504
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
K SF A + A G RS R L +E + +V + V+ +V
Sbjct: 505 KISFPQALRRVDEA--YGMAARSANAVKRFNTL-MEELRTIVESGAGPAVVLEAVLERT- 560
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
YL E +A D +D LQ L A +F + A+EEG
Sbjct: 561 -GYLAELQASTD-------PQDETRVENLQELAAVALEFEQDR---AEEEG--------- 600
Query: 822 INVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
L F++ ++ +++ + D +TL T+H +KGLE+ +VF+ + P +
Sbjct: 601 AGTLAEFLEKVALVADSDQIPDEDEDGSGVITLMTLHTAKGLEFPVVFLTGLEDGVFPHM 660
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSRFLKEIP- 936
G V E +EEERRL YV +TRAR++L++ M + W PSRFL+EIP
Sbjct: 661 RAL-GQVKE----LEEERRLAYVGITRARERLYLTRAAMRSAWGQPSYNPPSRFLEEIPD 715
Query: 937 HHL 939
HL
Sbjct: 716 QHL 718
>gi|422391385|ref|ZP_16471476.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL103PA1]
gi|422459058|ref|ZP_16535707.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL050PA2]
gi|422566524|ref|ZP_16642157.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL082PA2]
gi|314964915|gb|EFT09014.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL082PA2]
gi|315103904|gb|EFT75880.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL050PA2]
gi|327325604|gb|EGE67403.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL103PA1]
Length = 810
Score = 253 bits (645), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 212/734 (28%), Positives = 340/734 (46%), Gaps = 102/734 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN+ Q EA +P+L+VAG GSGK G+ P +ILA+TFT
Sbjct: 42 LADLNEPQREAVL-HAGSPVLVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTNK 100
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM+ R+ +VG AK + +STFHS ++++ R+ ++L + F IY +R I
Sbjct: 101 AAAEMKARVVDLVGN-RAKPMWVSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLIT 159
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++T D + ++ F + + K E
Sbjct: 160 --------------------LVTRDQN----------LDPKKFQPRAIMNWISHQKNELV 189
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D A A+ K+ D I + Y LR+ N LD+ DLI +V +L FPEV
Sbjct: 190 APDQAVAAAKSG------NDRINGDVYVEYQRRLRAANVLDFDDLIMYTVTVLRKFPEVR 243
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN--------------RITIVGDDDQSIF 515
+ Y+ ++ ++VDE+QDT+ QY ++ L + +VGD DQSI+
Sbjct: 244 ERYRRRFRHVLVDEYQDTNTAQYQFIRELCGDGPVELDDGARSVDPPELMVVGDSDQSIY 303
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I F KDF + I L +NYRST+ I+ AA++LI+ N+ R KN+ TD
Sbjct: 304 AFRGATIRNIIDFEKDFPGARTILLEQNYRSTQTILTAANNLIKVNLNRPA-KNLWTDQG 362
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G KI+ E + A++ +I E G SYG +A+ YR + F+ F
Sbjct: 363 DGDKIVGYVADTEHDEAAWVARRIDELVDEGR---TSYGQVAVFYRTNAQSRAFEDVFIR 419
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY +K VR ++ LR DD RR+ + R +
Sbjct: 420 TGLPYRVVGGVRFYERKEVRDAVSYLRAIANPSDDVSLRRILNT---PRRGIGARAEAAV 476
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+ +T R+ SF A I +I RS + Q R + ++ +V + + +
Sbjct: 477 EMFATARRISFWEALKRI--DEIDSLATRS-VNQIRAFVSLMDGHIAMVEQGKRADEIAS 533
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTA---AKEE 811
S+ L E + + + K ++ L ++++ L++ +F++ E+
Sbjct: 534 SI--------LKESGYITELENSKDPQDETRLENLIE-LVSVAQEFVARVHAVDIDEAEQ 584
Query: 812 GNVDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVA 870
GNV+ + + L AF++ I+ +++ D++ VTL T+H +KGLE+D VF+
Sbjct: 585 GNVEDLELSGDDSLPAFLEQIALVADSDQVPA---DSDGVVTLMTLHTAKGLEFDTVFIT 641
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ--- 927
+ P + A T + EERRL YV +TRARK+LF+ + W Q
Sbjct: 642 GFEDGVFPHMRSLADA-----TELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNP 696
Query: 928 PSRFLKEIPHHLRE 941
PSRF+ EIP L E
Sbjct: 697 PSRFIDEIPERLIE 710
>gi|213965014|ref|ZP_03393213.1| ATP-dependent DNA helicase PcrA [Corynebacterium amycolatum SK46]
gi|213952550|gb|EEB63933.1| ATP-dependent DNA helicase PcrA [Corynebacterium amycolatum SK46]
Length = 899
Score = 253 bits (645), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 220/760 (28%), Positives = 342/760 (45%), Gaps = 120/760 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LN QQ +A + +PLLIVAG GSGK G+ PS ILA+TFT
Sbjct: 77 LEGLNPQQRQA-VEHIGSPLLIVAGAGSGKTSVLTRRIAYLIGARGVLPSQILAITFTNK 135
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCR-SHAEKLERTSEFLIYGHGQQRRAI 348
AA+EMR+R+ +VG A+ + +STFHS +++ R HA S F IY RR +
Sbjct: 136 AAAEMRERVAGLVGD-QAQRMWVSTFHSMCVRILRMQHALVPGLNSNFSIYDSDDSRRLL 194
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
++ + L K+ + +L++ +S+ K N+
Sbjct: 195 ----SMIAKDMDLDAKKFTGRVLSS--------------------RISNLK----NELID 226
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
+A AS R D++ A + Y LR+ NA+D+ DLI V++ ++ P+V
Sbjct: 227 PEKAIADASTT-----RNPFDDVVARVYLEYQTRLRAANAVDFDDLIGEVVRIFTSHPQV 281
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-------NRITIVGDDDQSIFSFNGAD 521
+ Y+ ++ ++VDE+QDT+ QY L+ L + + +VGD DQSI++F GA
Sbjct: 282 AEYYRRRFRHVLVDEYQDTNHAQYVLVSTLVGKPGGDVPPSELCVVGDSDQSIYAFRGAT 341
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII 581
I + F KD+ I L +NYRST+ I+ AA++LI N R + K + TD G KI
Sbjct: 342 IRNIEEFEKDYPEATSILLEQNYRSTQTILSAANALIARNENRRE-KKLWTDLGEGGKIK 400
Query: 582 IKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN 641
NE + FI ++I + GP SY +AI YR S + + F +P+
Sbjct: 401 GYVADNEHDEARFIANEIEQLVDYGP---YSYSDVAIFYRTNNSSRALEDVFIRMGVPYT 457
Query: 642 -IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTI 700
+ G FY +K VR I+A LR DD RR+ + R + H+ +
Sbjct: 458 VVGGTRFYERKEVRDIVAYLRVIENFDDDVSLRRIINT---PRRGIGDRAVAHVSLYAED 514
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPS-----ISAVITS 755
+CSF +A + K+S RS+ + +EMI L S I ++ +
Sbjct: 515 ERCSFGTALRAVAEGKVSAVAARSR----NAMAAFVEMIDGLAADMASGELADIGDLVNA 570
Query: 756 VANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG--- 812
+ + K LE+ D L+ N+L SV + A+ S +A +EG
Sbjct: 571 IIDRSGYKSELERSN--DPQDATRLDNLNELVSVAREFSAEARMMSSVDISADVKEGSGA 628
Query: 813 ------------------------------NVDQDKKGCINVLKAFIDYISERETEHFRT 842
+ D D + L+AF++ +S
Sbjct: 629 AADAESGADTSGESEVESGIANDLARDFTADFDNDGEAEPGSLQAFLERVS--LVADADQ 686
Query: 843 QRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLY 902
D+ VTL T+H +KGLE+ +VF+ + P + + EERRL Y
Sbjct: 687 IPDDDTGVVTLMTLHTAKGLEFPVVFLIGWEDGLFPHLRALGDP-----KELAEERRLAY 741
Query: 903 VAMTRARKKLFILYVMMDANWQLLQ---PSRFLKEIPHHL 939
V +TRARK+L++ + ++W Q PSRFL E+P L
Sbjct: 742 VGITRARKQLYLTRAVTRSSWGSPQNNPPSRFLGEVPSDL 781
>gi|385782169|ref|YP_005758340.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 11819-97]
gi|418572787|ref|ZP_13136991.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21333]
gi|364523158|gb|AEW65908.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 11819-97]
gi|371983950|gb|EHP01082.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21333]
Length = 730
Score = 253 bits (645), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 217/725 (29%), Positives = 343/725 (47%), Gaps = 117/725 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +N +Q EA PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I K+ M G ++ L
Sbjct: 123 D---VLKNENI-DSKKFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTPA+ +K ++ A + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV + YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 203 PEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF D+ I L +NYRST+ I+ AA+ +I++N +R + K + T N++G KI E
Sbjct: 263 ILSFENDYPEANTIFLEQNYRSTKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + F+I +I++H NG Y +AILYR +V + F + +P+ +
Sbjct: 322 AMTERDEAEFVIREIMKHQRNGK----KYQDMAILYRTNAQSRVLEETFMKSNMPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR + ++K+
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINV--------PKRGVGPSSVEKVQNYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + A G K+ +TQ + L E+I L++ + + I + + V
Sbjct: 430 LQNNISMFDALGEADFIGLSKK--VTQ--ECLNFYELIQSLIKEQEFLE--IHEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
QK + +L +N L S + L ++ +F+S E N +++
Sbjct: 484 QKSGYRE----------MLERENTLES--RSRLENIDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E +T EN VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEADT----------ENGVTLMTMHSAKGLEFPIVFIMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ +E ++EERR+ YVA+TRA + L+I + M+ Q PSRFLKEIP
Sbjct: 579 IRAIK---SEDDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIP 635
Query: 937 HHLRE 941
L E
Sbjct: 636 ESLLE 640
>gi|257456971|ref|ZP_05622152.1| helicase, UvrD/Rep family [Treponema vincentii ATCC 35580]
gi|257445680|gb|EEV20742.1| helicase, UvrD/Rep family [Treponema vincentii ATCC 35580]
Length = 661
Score = 252 bits (644), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 217/712 (30%), Positives = 330/712 (46%), Gaps = 100/712 (14%)
Query: 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAA 291
++LN +Q +A ++ P+LI+AG GSGK GI S ILA+TFT AA
Sbjct: 4 ENLNPEQAKA-VNTINGPVLIIAGAGSGKTRVITFRIAHMLESGIPQSQILALTFTNKAA 62
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEA 351
EM RI + GK + LTISTFH+ +++ R + ++L F IY + + I E+
Sbjct: 63 REMEQRIKELTGKKL-QNLTISTFHALGVKILREYIDRLGWRQNFSIYDEVDRNQLIKES 121
Query: 352 VRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
+ L +I+T+ L Y +LF S K Q N
Sbjct: 122 AKEL---------KIATETLDV-----YGMGTLF----------SQIKTGQKN------- 150
Query: 412 DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQE 471
+ +T A +R + +E Y L+ NA+D+ DLI +KL + P+V
Sbjct: 151 ----FTAQT-AVYRPLYNE--------YQAGLKLFNAVDFDDLIMLPIKLFTEHPDVLAV 197
Query: 472 YQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Y++ ++ ++VDEFQDTS QY ++ ++A N + +VGDDDQSI+S+ GA+ F KD
Sbjct: 198 YKNRYRYVMVDEFQDTSIQQYQMMHLIADDN-VCVVGDDDQSIYSWRGANYENIRLFEKD 256
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F + EI+L +NYRST I+ AA+ +I HN R + K + + N G I I NE A+
Sbjct: 257 FPHLVEIKLEQNYRSTGTILAAANGVISHNTNRKE-KALWSGNGSGKPIEIFIPENEAAE 315
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
FI D IL S +G +L R G+ + AF + IP+ + G +F+++
Sbjct: 316 ADFIADTILTEKMRENRSYADFG---VLIRTNGLGRAIEEAFLDANIPYRMSGGTSFFQR 372
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
K ++ II+ LR DD R+ + K+ ++ + I+T + CS A
Sbjct: 373 KEIKDIISYLRVIANPDDDINLLRIINT---PRRGIGKKTLEVLSAIATEKDCSIRMA-- 427
Query: 711 DIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRA 770
I +R K L LE +L+ E +AN V + L+E+
Sbjct: 428 ------IHALLERPPDDFREKSLADLEEFVELISSERKQLLSGKGLANKV--RKLVERIQ 479
Query: 771 VVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFID 830
D+ L E ++ ++ L + T N D L +++
Sbjct: 480 YFDY----LTQEFQKNEKAARFKFLNIESLLQSIDTWETNPDNFDPS-------LYTYLN 528
Query: 831 YISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEK 890
I+ + Q ++ V + TIH +KGLE+ +VF+A A E IP ++ E
Sbjct: 529 RITLLSRDD---QNEEDTGEVNIMTIHAAKGLEFPVVFIAGAEEGIIPHAR----SMEEN 581
Query: 891 GTSVEEERRLLYVAMTRARKKLFILYVMM---DANWQLLQPSRFLKEIPHHL 939
VEEERRL YVA+TRAR KL I A PS FL+EIP L
Sbjct: 582 AGDVEEERRLFYVAITRARDKLIITSCRTRRRQAGLLECSPSPFLEEIPAEL 633
>gi|408491952|ref|YP_006868321.1| ATP-dependent DNA helicase UvrD/PcrA [Psychroflexus torquis ATCC
700755]
gi|408469227|gb|AFU69571.1| ATP-dependent DNA helicase UvrD/PcrA [Psychroflexus torquis ATCC
700755]
Length = 772
Score = 252 bits (644), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 226/733 (30%), Positives = 347/733 (47%), Gaps = 133/733 (18%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
Y++ LN+ Q EA P++++AG GSGK G+ NILA+TFT
Sbjct: 4 YIKQLNEAQREAVL-QKDGPMIVIAGAGSGKTRVLTYRIAYLMSEGVDSFNILALTFTNK 62
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHG---QQRR 346
AA EM++RI IVG A AK L + TFHS ++ R KL S F IY Q R
Sbjct: 63 AAKEMKNRISKIVG-AEAKNLWMGTFHSVFAKILRFEGGKLGFPSNFTIYDSNDSQQLIR 121
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
+II+ L ++ I K+I + + + + SL +NA L
Sbjct: 122 SIIKEKNL--DKDIYKYKQILSRISS-------FKNSLITVNAYL--------------- 157
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
+ + A A K P ++G+ I + Y A+D+ DL+ + +LL+ FP
Sbjct: 158 KNPELQEADAMAKRP----RLGE-----IYQEYVDRCFKSGAMDFDDLLLRTNELLTRFP 208
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGF 525
EV +YQ +K I+VDE+QDT+ QY +++ L+ + I +VGDD QSI+ F GA+I+
Sbjct: 209 EVLAKYQQKFKYILVDEYQDTNHSQYLIVRALSDRYQNICVVGDDAQSIYGFRGANINNI 268
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
+F+KD+ + K RL +NYRST+ IV+AA+S+I+ N + K V T+N GSKI +
Sbjct: 269 LNFQKDYSDVKSFRLEQNYRSTKNIVDAANSIIEKNKTKLD-KVVWTENLEGSKIHVNRL 327
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-G 644
N+ + F+ + + E A G A+LYR + + A R + IP+ I+ G
Sbjct: 328 VNDAEEGRFVANSVTEKCMQEGA---KNGEFAVLYRTNAQSRSIEDALRRKDIPYRIYGG 384
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKA-----------FLLLEKEEKKRVIDH 693
++FY++K V+ IIA LR + D+ +RV L+L KR I
Sbjct: 385 LSFYQRKEVKDIIAYLRLIVNPKDEEALKRVINNPSRGIGQTTIDKLILAANHYKRTIFE 444
Query: 694 IDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLT--LEMISKLVRREPSISA 751
I I I K + +G K L + MI + S++A
Sbjct: 445 I--IENINKLDL-------------------SINKGTKTKLVNFVNMIKSFKVQNDSLNA 483
Query: 752 VITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEE 811
+ +V +K L Q D + +N ++ LL ++DF+ E
Sbjct: 484 F--QITEIVSKKTGLLQEFKKDGTPEGIARIEN-----IEELLNGISDFV---------E 527
Query: 812 GNVDQ-DKKGCINVLKAFIDYIS-----ERETEHFRTQRHDNENSVTLTTIHQSKGLEWD 865
G + D KG L F++ I+ ++ET +E+ V L TIH +KGLE+
Sbjct: 528 GQKELVDAKGS---LTEFLEDIALATSLDKETA--------DEDRVALMTIHLAKGLEFP 576
Query: 866 IVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQL 925
VF+ E P + + +EEERRL YVA+TRA K+ ++ YV+ W
Sbjct: 577 YVFIVGLEEDLFPSAMSLSTR-----SELEEERRLFYVALTRAEKEAYLTYVVSRYRWGK 631
Query: 926 L---QPSRFLKEI 935
L +PSRF++EI
Sbjct: 632 LIDAEPSRFIEEI 644
>gi|319947691|ref|ZP_08021905.1| UvrD/Rep family ATP-dependent DNA helicase [Dietzia cinnamea P4]
gi|319438641|gb|EFV93547.1| UvrD/Rep family ATP-dependent DNA helicase [Dietzia cinnamea P4]
Length = 824
Score = 252 bits (644), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 223/774 (28%), Positives = 347/774 (44%), Gaps = 116/774 (14%)
Query: 226 TDTIQTIKTQNMPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK----------- 274
TDT Q+ P +S L LN QQ AA PLLIVAG GSGK
Sbjct: 2 TDTASAPARQHSP--HSPLLDGLNPQQ-AAAVTHRGGPLLIVAGAGSGKTSVLTRRIAYL 58
Query: 275 ----GISPSNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKL 330
G P ILA+TFT AA+EMR+R+ ++VG A+ + ++TFHS +++ R+ + L
Sbjct: 59 LAEGGAHPGQILAITFTNKAAAEMRERVAALVGP-HAERMWVATFHSICVRILRAQSALL 117
Query: 331 -ERTSEFLIYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNA 389
R S F IY RR + ++ E+ L VK+ + ML +
Sbjct: 118 GTRNSNFTIYDSDDSRRLL----GMIAKEQQLEVKKFTPRMLAS---------------- 157
Query: 390 MLFFSMSSFKLCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNAL 449
++S+ K N+ D A+A + + + + AA+ Y L++ NA
Sbjct: 158 ----AISNHK----NELR----DPAEAMDRALEDSDRTAQTV-AAVFTEYQARLQAANAF 204
Query: 450 DYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR------ 503
D+ DLI +V LL PEV Y+ ++ ++VDE+QDT+ QY L++ L
Sbjct: 205 DFDDLIGETVALLRAHPEVAAYYRRRFRHVMVDEYQDTNHAQYVLVRTLVGGAEGDDDEV 264
Query: 504 ------ITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSL 557
+ +VGD DQSI++F GA I + F D+ + + I L +NYRST+ I+ AA+++
Sbjct: 265 GVPPAELCVVGDADQSIYAFRGATIRNIEDFEHDYPDARSILLEQNYRSTQTILSAANAV 324
Query: 558 IQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIA 617
I N R + KN+ T G ++ NE + FI +I +G A SY +A
Sbjct: 325 IARNAGRRE-KNLWTAEGAGELLVGYVADNEHDEARFIAGEIDRLVDSGEA---SYSDVA 380
Query: 618 ILYRRQVSGKVFQTAFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVF 676
+ YR S +V + F +P+ + G FY +K VR ++A L+ D RR+
Sbjct: 381 VFYRTNNSSRVIEDVFVRLGLPYKVVGGTRFYERKEVRDVVAYLKVLNNPDDAVAIRRIL 440
Query: 677 KAFLLLEKEEKKRVIDHIDKISTI----RKCSFISAACDIFGAKISGTFKRSQLTQGRKV 732
++ + D + + R F A D K+S RS + +
Sbjct: 441 NT-------PRRGIGDRAEACVVVHAEQRGIGFAQALRDASEGKVSLLPTRSV----KAI 489
Query: 733 LLTLEMISKLVRR------------EPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLL 780
+EM+ L R P + A++ +V Y E A D L
Sbjct: 490 AGFVEMLDDLRGRLDGDDHAGGHDSAPDVGALVEAVLERT--GYRAELEASNDPQDAARL 547
Query: 781 NEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI---NVLKAFIDYISERET 837
+ N+L V + ++ S + EE + D D + L AF++ +S
Sbjct: 548 DNLNELVGVGREFSSEAALQRSAREQGFVEEADADADLDEGLAEPGSLAAFLERVS--LV 605
Query: 838 EHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEE 897
D++ VTL T+H +KGLE+ +VF+ + P + + EE
Sbjct: 606 ADADEIPDDDQGQVTLMTLHTAKGLEFPVVFLIGMEDGLFPHMRALG-----DPAELSEE 660
Query: 898 RRLLYVAMTRARKKLFILYVMMDANWQLLQP-----SRFLKEIPHHLREVQAEQ 946
RRL YV +TRAR++L++ MM ++W QP SRFL+EIP E Q E+
Sbjct: 661 RRLAYVGITRARRRLYLTRAMMRSSWG--QPMTNPGSRFLEEIPSEAIEWQREE 712
>gi|422464280|ref|ZP_16540891.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL060PA1]
gi|315093785|gb|EFT65761.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL060PA1]
Length = 810
Score = 252 bits (644), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 212/734 (28%), Positives = 340/734 (46%), Gaps = 102/734 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN+ Q EA +P+L+VAG GSGK G+ P +ILA+TFT
Sbjct: 42 LADLNEPQREAVL-HAGSPVLVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTNK 100
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM+ R+ +VG AK + +STFHS ++++ R+ ++L + F IY +R I
Sbjct: 101 AAAEMKARVVDLVGN-RAKPMWVSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLIT 159
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++T D + ++ F + + K E
Sbjct: 160 --------------------LVTRDQN----------LDPKKFQPRAIMNWISHQKNELV 189
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D A A+ K+ D I + Y LR+ N LD+ DLI +V +L FPEV
Sbjct: 190 APDQAVAAAKSG------NDRINGDVYVEYQRRLRAANVLDFDDLIMYTVTVLRKFPEVR 243
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN--------------RITIVGDDDQSIF 515
+ Y+ ++ ++VDE+QDT+ QY ++ L + +VGD DQSI+
Sbjct: 244 ERYRRRFRHVLVDEYQDTNTAQYQFIRELCGDGPVELDDGARSVDPPELMVVGDSDQSIY 303
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I F KDF + I L +NYRST+ I+ AA++LI+ N+ R KN+ TD
Sbjct: 304 AFRGATIRNIIDFEKDFPGARTILLEQNYRSTQTILTAANNLIKVNLNRPA-KNLWTDQG 362
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G KI+ E + A++ +I E G SYG +A+ YR + F+ F
Sbjct: 363 DGDKIVGYVADTEHDEAAWVARRIDELVDEGR---TSYGQVAVFYRTNAQSRAFEDVFIR 419
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY +K VR ++ LR DD RR+ + R +
Sbjct: 420 TGLPYRVVGGVRFYERKEVRDAVSYLRAIANPSDDVSLRRILNT---PRRGIGARAEAAV 476
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+ +T R+ SF A I +I RS + Q R + ++ +V +
Sbjct: 477 EMFATARRISFWEALKRI--DEIDSLATRS-VNQIRAFVSLMDGHIAMVEQGKR------ 527
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTA---AKEE 811
A+ + + L E + + + K ++ L ++++ L++ +F++ E+
Sbjct: 528 --ADEIARSILKESGYITELENSKDPQDETRLENLIE-LVSVAQEFVARVHAVDIDEAEQ 584
Query: 812 GNVDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVA 870
GNV+ + + L AF++ I+ +++ D++ VTL T+H +KGLE+D VF+
Sbjct: 585 GNVEDLELSGDDSLPAFLEQIALVADSDQVPA---DSDGVVTLMTLHTAKGLEFDTVFIT 641
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ--- 927
+ P + A T + EERRL YV +TRARK+LF+ + W Q
Sbjct: 642 GFEDGVFPHMRSLADA-----TELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNP 696
Query: 928 PSRFLKEIPHHLRE 941
PSRF+ EIP L E
Sbjct: 697 PSRFIDEIPERLIE 710
>gi|295697356|ref|YP_003590594.1| ATP-dependent DNA helicase PcrA [Kyrpidia tusciae DSM 2912]
gi|295412958|gb|ADG07450.1| ATP-dependent DNA helicase PcrA [Kyrpidia tusciae DSM 2912]
Length = 755
Score = 252 bits (644), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 216/738 (29%), Positives = 341/738 (46%), Gaps = 106/738 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LND Q EA PLLI+AG GSGK P ILA+TFT
Sbjct: 15 LAGLNDAQREA-VRQTEGPLLILAGAGSGKTRVLTHRVAYLVATRKAPPWGILAITFTNK 73
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+RIG +VG A+E+ +STFHS+ +++ R H E L T F +I+
Sbjct: 74 AAREMRERIGRLVGP-EAEEIWVSTFHSYCVRVLRRHIEPLGFTRSF----------SIL 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+A +++ VK++ +M F R M A+ Q + RD
Sbjct: 123 DA-----SDQTTAVKQVLGEMNLDTKKFDPRR----MAGAISALKNELITPSQAAERARD 173
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
E+ A + E Y LR NALD+ DL+ +V+L FPE
Sbjct: 174 -----------------FFQEVVAQVYERYQQKLRVNNALDFDDLLVKTVELWDAFPETL 216
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDSF 528
++ Q + + VDE+QDT+ QY L++ LA R + +VGD DQ+I+ + GAD+ F
Sbjct: 217 EDQQRRFVYLHVDEYQDTNHAQYELVKRLAQRRRNLCVVGDSDQAIYGWRGADVRNILDF 276
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
D+ + K I+L +NYRST I+ AA+++I HN +R + K + +D G +I+ E +E
Sbjct: 277 EADYPDAKVIKLEQNYRSTGRILAAANAVIAHNRQRKE-KRLWSDRPQGEPVIVHEAMDE 335
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF-NIHGVAF 647
+ F++++I H G YG +A+LYR +V + + IP+ + GV F
Sbjct: 336 QGEAYFVVEEIRNHVEQG----GRYGDVAVLYRMGAQSRVLEEMMMKASIPYVMVGGVKF 391
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y +K ++ ++A LR + DD RV KR I T+ K + +
Sbjct: 392 YERKEIKDLLAYLRILVNPRDDFSTERVINV--------PKRGIGE----GTLTKAAAFA 439
Query: 708 AACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLE 767
A ++ + K QL + + +R+ ++A + ++ + L+E
Sbjct: 440 AERNL--SLYEALEKVDQLDVSARA-------AAGIRQFVDLTAALRAMMPYLSVTELVE 490
Query: 768 QRAVVDFDGGK--LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVL 825
+ V++ G + L+ ED L + Q L ++ +FLS + + D +G +
Sbjct: 491 E--VLNRTGYREALIREDT-LEA--QSRLENLEEFLSVTQEFDRRQ---DTAAEGGLEAF 542
Query: 826 KAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNG 885
A + +S+ + + E+ V L T+H +KGLE+ +VF+ E P +
Sbjct: 543 LADVALVSDLDM-------AETEDGVVLMTLHSAKGLEFPVVFLVGMEEGIFP-----HS 590
Query: 886 AVNEKGTSVEEERRLLYVAMTRARKKLFILYVM---MDANWQLLQPSRFLKEIPHHLREV 942
V + +EEERRL YV +TRA +L I + WQ PSRFL+EIP L +
Sbjct: 591 RVLDDPDQMEEERRLCYVGITRAMDRLLITRAQQRNLYGRWQANPPSRFLEEIPEALLQW 650
Query: 943 QAEQSVQDQHENIPEGTA 960
A + PE A
Sbjct: 651 SAPRRSLRDRAAAPEPAA 668
>gi|291521009|emb|CBK79302.1| ATP-dependent DNA helicase PcrA [Coprococcus catus GD/7]
Length = 768
Score = 252 bits (644), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 221/724 (30%), Positives = 335/724 (46%), Gaps = 120/724 (16%)
Query: 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAA 290
+SLN Q EA PLLI+AG GSGK ++P NILA+TFT A
Sbjct: 5 ESLNPVQQEAVY-HTEGPLLILAGAGSGKTRVLTHRIAYLIDECQVNPWNILAITFTNKA 63
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIE 350
A EMR+R+ IV A+++ +STFHS +++ R + ++L F IY Q+ I E
Sbjct: 64 AGEMRERVDQIV-DFGAEDIWVSTFHSTCVRILRRYIDRLGYDRSFTIYDGDDQKTVIKE 122
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
V K+++ D + L ++SS
Sbjct: 123 -----------VCKKLNID-------------TKIYKERTLLSAISS------------- 145
Query: 411 MDVAKASGKTPAEF--RKIGD---EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
AK P E+ R GD + A + E Y LRS NALD+ DL+ +V+L T
Sbjct: 146 ---AKDEMIGPKEYLLRSEGDYARQRIAQVYEEYQKRLRSNNALDFDDLLFKTVELFKTD 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISG 524
EV YQD +K I+VDE+QDT+ +Q+ + +LA+ R + +VGDDDQSI+ F GA+I
Sbjct: 203 AEVLNYYQDRFKYIMVDEYQDTNTVQFQFVSLLAAKYRNLCVVGDDDQSIYKFRGANIHN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
F K F + K I+L +NYRST+ I+ AA+ +I HN R + K + TDN G I + +
Sbjct: 263 ILDFEKTFPDAKVIKLEQNYRSTKTILNAANGVIHHNQGR-KDKTLWTDNEQGVPIALNQ 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + I++ I A+ Y A+LYR +V + F R IP+ +
Sbjct: 322 YQTEYEEAMGIVNDI---AAKTERHEAEYKDFAVLYRTNAQSRVLEEKFVTRNIPYRVVG 378
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
GV FY++K ++ I+A L+ G DD RRV KR I +T+ K
Sbjct: 379 GVNFYQRKEIKDILAYLKIINNGQDDVAVRRVVNV--------PKRGIG----ATTVTKA 426
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
+ D +G + FK+ ++ I L R I+ + + +
Sbjct: 427 ---AEYADQWGISLYEAFKQ------------VDGIPGLGRAAAKINGFVNLIQVFRTKA 471
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV-----DQDK 818
+ +L +E + L+ L A+ TD +T+ E N ++ +
Sbjct: 472 EYMSL--------AELYDEVLEDTGYLKELQAEQTDEATTRIENLDELRNKIVAYEEETE 523
Query: 819 KGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
+ +N L I +++ + D++N V L T+H +KGLE+ V++ + P
Sbjct: 524 QPSLNELLEQIALVADVDN------MDDSDNKVILMTLHSAKGLEFPYVYLCGMEDGLFP 577
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
+ VN+ +EEERRL YV +TRA KKL + Y MM Q + SRF+KEI
Sbjct: 578 ---SYMTIVNDDPMEIEEERRLCYVGITRAMKKLTLSYAMCRMMHGQTQYNKISRFVKEI 634
Query: 936 PHHL 939
P L
Sbjct: 635 PPQL 638
>gi|416127644|ref|ZP_11597010.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis FRI909]
gi|319399870|gb|EFV88117.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis FRI909]
Length = 729
Score = 252 bits (643), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 219/734 (29%), Positives = 347/734 (47%), Gaps = 119/734 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++++N +Q EA PLLI+AG GSGK +SP NILA+TFT
Sbjct: 5 VKNMNSEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAKEMKARVEHLVGEE-AQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
E +L++E I KR M G ++ L
Sbjct: 123 E---VLKSENI-DSKRFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP + +K + ++ A + + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PE + YQ+ ++ I VDE+QDT+ QY+L+++LA+ + +VGD DQSI+ + GADI
Sbjct: 203 PETLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ K I L +NYRST+ I+ AA+ +I+HN +R + K + T NS G KI E
Sbjct: 263 ILSFEEDYPEAKTIFLEQNYRSTKNILNAANEVIKHNSER-KPKGLWTANSGGDKIQYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++H G Y +AILYR +V + F + IP+ +
Sbjct: 322 AMTERDEAEYVVKEIMKHQRGGK----KYSEMAILYRTNAQSRVLEETFMKSNIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR I ++KI T
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINV--------PKRGIGPSSVEKIQTYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + G K+ +TQ + + EMI L++ + + I+ + + V
Sbjct: 430 LQNSISMFDALAEVDFIGLSKK--VTQ--ECISFYEMIQNLIKEQEFLE--ISEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
QK G K +L+ + + S + L ++ +F+S E N +++
Sbjct: 484 QK-----------SGYKDMLDREQSIES--RSRLENLDEFMS---VPKDYEENTPLEEQS 527
Query: 821 CINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
IN L + + I E D +N VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 528 LINFLTDLSLVADIDE----------ADTQNGVTLMTMHSAKGLEFPIVFIMGMEESLFP 577
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
+ +E +EEERR+ YVA+TRA + L+I M+ Q PSRFLKEI
Sbjct: 578 HIRAIK---SEDDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKEI 634
Query: 936 PHHLREVQAEQSVQ 949
P L + Q Q
Sbjct: 635 PEDLLDSHTGQKRQ 648
>gi|346223772|ref|ZP_08844914.1| ATP-dependent DNA helicase [Anaerophaga thermohalophila DSM 12881]
Length = 769
Score = 252 bits (643), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 214/732 (29%), Positives = 342/732 (46%), Gaps = 109/732 (14%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
YL+ LN+ Q +A D+ P L++AG GSGK G+ P ILA+TFT
Sbjct: 4 YLEQLNEAQYKAVV-DIDGPALVIAGAGSGKTRVLTYRIAYLLNNGVPPWTILALTFTNK 62
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++RIG IVG A +L + TFHS ++ R A+ + F IY + I
Sbjct: 63 AAGEMKERIGQIVGHEMASKLWMGTFHSIFARILRMEAKHINFPPTFTIYDTTDSKSLIN 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+R ++ + K + T G + L + A Y + ++
Sbjct: 123 SILRNMK-----LNKNKAYKPGTILGRISSAKNDLIVPAA-------------YAQDQKR 164
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
M A A+ P + I E+Y R A+D+ DL+ + L PEV
Sbjct: 165 TM--ADAAANIP---------MMPEIYEHYVRECRKAGAMDFDDLLLNTNILFRDHPEVL 213
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDSF 528
+YQ+ +K I+VDE+QDT+ QY + + LA H I +VGDD QSI+SF GA I +F
Sbjct: 214 AKYQERFKYILVDEYQDTNFSQYLITRKLAEKHKNICVVGDDAQSIYSFRGAKIENILNF 273
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQL-KNVQTDNSHGSKIIIKECHN 587
R D+ +YK +L +NYRST+ IV AA+S+I N R Q+ K + + N G++I + + H+
Sbjct: 274 RNDYPDYKLFKLEQNYRSTQTIVNAANSIIVKN--RGQIHKKIYSRNDEGARINLIQAHS 331
Query: 588 EDAQCAFIIDKI----LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH 643
+ + +++ I L H Y AILYR ++F+ A R++ IP+ I+
Sbjct: 332 DVDEGFIVVNDINEVRLRHQ-------YQYQDFAILYRTNAQSRIFEEALRKKNIPYKIY 384
Query: 644 -GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRK 702
G++FY++K ++ ++A LR ++ D+ +R+ + K +D I+ ++
Sbjct: 385 GGLSFYQRKEIKDLLAYLRVSVNPNDNEALKRIIN---YPARGIGKTTMDKIEALANHNN 441
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + + A + F L RK+ +IS + + P++SA
Sbjct: 442 VSLWAVLTN--PALPNTGFNAGTL---RKLNSFTRLISGFISQVPNLSA----------- 485
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV------DQ 816
FD + NE +L+ L D T T+ +E N ++
Sbjct: 486 -----------FD---ITNEIATQSGILKELHQDKTHESQTRLENLEELFNAIREFSDNR 531
Query: 817 DKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
+ G N L F+ +S + T++ D+ N VTL TIH +KGLE+ V++ E
Sbjct: 532 QESGENNGLADFLQEVSLLTDQD--TEKPDDINKVTLMTIHAAKGLEFKNVYIVGIEEGL 589
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLK 933
P +G + +EEERRL YVA+TRA+++ + + + L +PSRFL
Sbjct: 590 FP-----SGMASTSEAGLEEERRLFYVALTRAQERATLTFSRSRYKFGELTFARPSRFLG 644
Query: 934 EIPHHLREVQAE 945
EI V E
Sbjct: 645 EIDQSYLNVPGE 656
>gi|420200714|ref|ZP_14706355.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM031]
gi|394267672|gb|EJE12256.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM031]
Length = 729
Score = 251 bits (642), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 218/735 (29%), Positives = 346/735 (47%), Gaps = 121/735 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++++N +Q EA PLLI+AG GSGK +SP NILA+TFT
Sbjct: 5 VKNMNSEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ ++I
Sbjct: 64 AAKEMKARVEHLVGEE-AQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQK-SVI 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ V EN + KR M G ++ L
Sbjct: 122 KDVLKSEN---IDSKRFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP + +K + ++ A + + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PE + YQ+ ++ I VDE+QDT+ QY+L+++LA+ + +VGD DQSI+ + GADI
Sbjct: 203 PETLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ K I L +NYRST+ I+ AA+ +I+HN +R + K + T NS G KI E
Sbjct: 263 ILSFEEDYPEAKTIFLEQNYRSTKNILNAANEVIKHNSER-KPKGLWTANSGGDKIQYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++H G Y +AILYR +V + F + IP+ +
Sbjct: 322 AMTERDEAEYVVKEIMKHQRGGK----KYSEMAILYRTNAQSRVLEETFMKSNIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR I ++KI T
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINV--------PKRGIGPSSVEKIQTYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREP--SISAVITSVANM 759
+ IS + G K+ +TQ + + EMI L++ + IS ++ V
Sbjct: 430 LQNNISMFDALAEVDFIGLSKK--VTQ--ECISFYEMIQNLIKEQEFLEISEIVDEVLQK 485
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
K +L+Q ++ RS L+ ++ +F+S E N +++
Sbjct: 486 SGYKDMLDQEQSIES------------RSRLE----NLDEFMS---VPKDYEENTPLEEQ 526
Query: 820 GCINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
IN L + + I E +T +N VTL T+H +KGLE+ IVF+ E+
Sbjct: 527 SLINFLTDLSLVADIDEADT----------QNGVTLMTMHSAKGLEFPIVFIMGMEESLF 576
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKE 934
P + +E +EEERR+ YVA+TRA + L+I M+ Q PSRFLKE
Sbjct: 577 PHIRAIK---SEDDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKE 633
Query: 935 IPHHLREVQAEQSVQ 949
IP L + Q Q
Sbjct: 634 IPEDLLDSHTGQKRQ 648
>gi|313147251|ref|ZP_07809444.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12]
gi|313136018|gb|EFR53378.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12]
Length = 786
Score = 251 bits (642), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 221/758 (29%), Positives = 353/758 (46%), Gaps = 120/758 (15%)
Query: 237 MPDEYSKYLQSLNDQQLEAAC-GDMSTPLLIVAGPGSGK--------------GISPSNI 281
MPD Y++ LN+ Q A GD P L++AG GSGK G +P NI
Sbjct: 1 MPD----YIEELNESQRAAVLYGD--GPSLVIAGAGSGKTRVLTYKIAYLLENGYNPWNI 54
Query: 282 LAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGH 341
LA+TFT AA EM++RI VG+ A+ L + TFHS ++ R+ A + TS+F IY
Sbjct: 55 LALTFTNKAAREMKERIARQVGEQRARYLWMGTFHSVFSRILRAEASHIGFTSQFTIYDS 114
Query: 342 GQQR---RAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSF 398
+ R+II+ + L +EK + + H + S + N +
Sbjct: 115 ADSKSLLRSIIKEMGL--DEKTYKPGSVQARISNAKNHL--VSPSGYAANKEAY------ 164
Query: 399 KLCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCS 458
A A+ K PA I D I Y R A+D+ DL+ +
Sbjct: 165 --------------EADAAAKMPA----IRD-----IYSRYRERCRQAGAMDFDDLLVYT 201
Query: 459 VKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSL-LQILASHNRITIVGDDDQSIFSF 517
L FPEV Y++ ++ ++VDE+QDT+ Q+S+ LQ+ + R+ +VGDD QSI+SF
Sbjct: 202 YVLFRDFPEVLARYREQFRYVLVDEYQDTNYAQHSIVLQLTKENQRVCVVGDDAQSIYSF 261
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GADI F K + + K +L +NYRST+ IV AA+SLI+ N ++ K V ++ G
Sbjct: 262 RGADIDNILYFTKIYPDTKVFKLEQNYRSTQTIVRAANSLIEKNERQIP-KEVFSEKERG 320
Query: 578 SKIIIKECHNEDAQCAFIIDKIL----EHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
I + + +++ + + +KI EH Y AILYR +VF+ A
Sbjct: 321 EAIGVFQAYSDVEEGDIVTNKIAQLRREHD-------YGYSDFAILYRTNAQSRVFEEAL 373
Query: 634 RERKIPFNIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID 692
R+R +P+ I+ G++FY++K ++ IIA R + D+ ++R+ + +
Sbjct: 374 RKRSMPYKIYGGLSFYQRKEIKDIIAYFRLVVNPNDEEAFKRIIN---YPARGIGDTTVG 430
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV 752
I K +T S + C+ ++ QG + L+ M + I
Sbjct: 431 KIIKAATDNNVSLWTVLCEPITYGLTINKNTHTKLQGFRELIEQFMTEVAEKNAYEIGTA 490
Query: 753 I---TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAK 809
I + + N V Q L E L ++N ++ L+ + DF + + +
Sbjct: 491 IIRQSGIINDVCQDNLPEN----------LSRKEN-----IEELVNGMNDFCAMR----Q 531
Query: 810 EEGNVDQDKKGCINVLKAFIDYISERE--TEHFRTQRHDNENSVTLTTIHQSKGLEWDIV 867
EEGN NV + ID++SE T+ + D E VTL T+H +KGLE+ V
Sbjct: 532 EEGNT--------NV--SLIDFLSEVSLLTDQDSDKEGDGEK-VTLMTVHSAKGLEFRNV 580
Query: 868 FVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ 927
FV E P +G + ++EEERRL YVA+TRA + F+ + + ++
Sbjct: 581 FVVGLEENLFP-----SGMAGDSPRAMEEERRLFYVAITRAEEHCFLSFAKTRFRYGKME 635
Query: 928 ---PSRFLKEIPHHLREVQAEQSVQDQHENIPEGTAQF 962
PSRFL++I ++ E ++ ++ EG +F
Sbjct: 636 FGSPSRFLRDIDTRFLQLPQEAAL---GRSVDEGAGRF 670
>gi|422575012|ref|ZP_16650556.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL001PA1]
gi|314924241|gb|EFS88072.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL001PA1]
Length = 810
Score = 251 bits (642), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 211/734 (28%), Positives = 340/734 (46%), Gaps = 102/734 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN+ Q +A +P+L+VAG GSGK G+ P +ILA+TFT
Sbjct: 42 LADLNEPQRDAVL-HAGSPVLVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTNK 100
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM+ R+ +VG AK + +STFHS ++++ R+ ++L + F IY +R I
Sbjct: 101 AAAEMKARVVDLVGN-RAKPMWVSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLIT 159
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++T D + ++ F + + K E
Sbjct: 160 --------------------LVTRDQN----------LDPKKFQPRAIMNWISHQKNELV 189
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D A A+ K+ D I + Y LR+ N LD+ DLI +V +L FPEV
Sbjct: 190 APDQAVAAAKSG------NDRINGDVYVEYQRRLRAANVLDFDDLIMYTVTVLRKFPEVR 243
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN--------------RITIVGDDDQSIF 515
+ Y+ ++ ++VDE+QDT+ QY ++ L + +VGD DQSI+
Sbjct: 244 ERYRRRFRHVLVDEYQDTNTAQYQFIRELCGDGPVELDDGARSVDPPELMVVGDSDQSIY 303
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I F KDF + I L +NYRST+ I+ AA++LI+ N+ R KN+ TD
Sbjct: 304 AFRGATIRNIIDFEKDFPGARTILLEQNYRSTQTILTAANNLIKVNLNRPA-KNLWTDQG 362
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G KI+ E + A++ +I E G SYG +A+ YR + F+ F
Sbjct: 363 DGDKIVGYVADTEHDEAAWVARRIDELVDEGR---TSYGQVAVFYRTNAQSRAFEDVFIR 419
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY +K VR ++ LR DD RR+ + R +
Sbjct: 420 TGLPYRVVGGVRFYERKEVRDAVSYLRAIANPSDDVSLRRILNT---PRRGIGARAEAAV 476
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+ +T R+ SF A I +I RS + Q R + ++ +V + + +
Sbjct: 477 EMFATARRISFWEALKRI--DEIDSLATRS-VNQIRAFVSLMDGHIAMVEQGKRADEIAS 533
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTA---AKEE 811
S+ L E + + + K ++ L ++++ L++ +F++ E+
Sbjct: 534 SI--------LKESGYITELENSKDPQDETRLENLIE-LVSVAQEFVARVHAVDIDEAEQ 584
Query: 812 GNVDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVA 870
GNV+ + + L AF++ I+ +++ D++ VTL T+H +KGLE+D VF+
Sbjct: 585 GNVEDLELSGDDSLPAFLEQIALVADSDQVPA---DSDGVVTLMTLHTAKGLEFDTVFIT 641
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ--- 927
+ P + A T + EERRL YV +TRARK+LF+ + W Q
Sbjct: 642 GFEDGVFPHMRSLADA-----TELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNP 696
Query: 928 PSRFLKEIPHHLRE 941
PSRF+ EIP L E
Sbjct: 697 PSRFIDEIPERLIE 710
>gi|296169707|ref|ZP_06851325.1| ATP-dependent helicase PcrA [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295895704|gb|EFG75400.1| ATP-dependent helicase PcrA [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 777
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 213/742 (28%), Positives = 350/742 (47%), Gaps = 99/742 (13%)
Query: 236 NMPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSN 280
N+ E + L+ LN QQ +A + TPLLIVAG GSGK G+
Sbjct: 9 NLTSEADQLLEGLNPQQRQAVVHE-GTPLLIVAGAGSGKTAVLTRRIAYLIAARGVGVGQ 67
Query: 281 ILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIY 339
ILA+TFT AA+EMR+R+ +VG A+ + +STFHS +++ R+ A +E S F IY
Sbjct: 68 ILAITFTNKAAAEMRERVVRLVGN-RARAMWVSTFHSTCVRILRNQAALIEGLNSNFSIY 126
Query: 340 GHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFK 399
RR + +++ + L +KR S +L ++S+ K
Sbjct: 127 DADDSRRLL----QMIGRDMGLDIKRYSPRLLAN--------------------AISNLK 162
Query: 400 LCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSV 459
N+ +D A+A K + + + A++ Y LR+ NALD+ DLI +V
Sbjct: 163 ----NEL----IDPAEAVAKLTDDSDDLARTV-ASVYGEYQRRLRAANALDFDDLIGETV 213
Query: 460 KLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-----------RITIVG 508
+L FP++ Q Y+ ++ ++VDE+QDT+ QY L++ L H+ + +VG
Sbjct: 214 AVLRAFPQIAQHYRRRFRHVLVDEYQDTNHAQYVLVRELVGHDVTESGDDVPPAELCVVG 273
Query: 509 DDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLK 568
D DQSI++F GA I + F +D+ + I L +NYRST+ I+ AA+S+I N R + K
Sbjct: 274 DADQSIYAFRGATIRNIEDFERDYPDATTILLEQNYRSTQNILSAANSVIARNSGRRE-K 332
Query: 569 NVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKV 628
+ TD G I+ NE + F+ ++I A G +Y +A+ YR S +
Sbjct: 333 RLWTDAGAGELIVGYVADNEHDEARFVAEEIDALADRGE---ITYNDVAVFYRTNNSSRS 389
Query: 629 FQTAFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEK 687
F+ F IP+ + GV FY +K +R I+A LR D RR+ +
Sbjct: 390 FEEVFIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSMRRILNT-------PR 442
Query: 688 KRVIDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRR-E 746
+ + D + + + ++ D A G + + +E++ +L R +
Sbjct: 443 RGIGDRAEACVAVYAENTGASFADALVAAAEGKVPMLNSRAEKAIAGFVELLDELRGRLD 502
Query: 747 PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFT 806
+ ++ SV + LE D L DN L L++ +F + +
Sbjct: 503 EDLGDLVESVLERTGYRRELESST----DPQDLARLDN-----LNELVSVAHEFSTDRAN 553
Query: 807 AAKEEGNV---DQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGL 862
AA + ++ D + VL F++ +S +++ D VTL T+H +KGL
Sbjct: 554 AAALDESLQAPDDEDVPDTGVLAEFLERVSLVSDSDEI---PDDGAGMVTLMTLHTAKGL 610
Query: 863 EWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDAN 922
E+ +VFV + P + + + EERRL YV +TRAR++L++ ++ ++
Sbjct: 611 EFPVVFVTGWEDGMFPHMRALDDP-----RELSEERRLAYVGITRARQRLYLSRAIVRSS 665
Query: 923 W--QLLQP-SRFLKEIPHHLRE 941
W +L P SRFL+EIP L E
Sbjct: 666 WGQPMLNPESRFLREIPQELIE 687
>gi|386383855|ref|ZP_10069290.1| ATP-dependent DNA helicase [Streptomyces tsukubaensis NRRL18488]
gi|385668682|gb|EIF91990.1| ATP-dependent DNA helicase [Streptomyces tsukubaensis NRRL18488]
Length = 825
Score = 251 bits (641), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 217/724 (29%), Positives = 337/724 (46%), Gaps = 104/724 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ LND+Q AA +PLLIVAG GSGK + P ILA+TFT
Sbjct: 70 LEGLNDEQ-RAAVVHSGSPLLIVAGAGSGKTRVLTHRIAHLLATRHVHPGQILAITFTNK 128
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A + +STFHS +++ R ++KL TS F IY +R +
Sbjct: 129 AAGEMKERVEQLVGP-RANAMWVSTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMA 187
Query: 350 EAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
R L+ + K K S + + N ++ SF + FE
Sbjct: 188 LVCRDLDLDPKKFPPKSFSAKISN-------------LKNELI--DEESFADQAADGFE- 231
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
KT AE ++ Y LR NALD+ D+I +V LL FP+V
Sbjct: 232 ----------KTLAEAYRM-----------YQSRLREANALDFDDIIMTTVHLLQAFPDV 270
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-------ITIVGDDDQSIFSFNGAD 521
+ YQ ++ ++VDE+QDT+ QY+L++ L R + +VGD DQSI++F GA
Sbjct: 271 SEHYQRRFRHVLVDEYQDTNHAQYTLVRELVGTGREDLPPAELCVVGDADQSIYAFRGAT 330
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII 581
I F +D+ + I L +NYRST+ I+ AA+++I+ N R + KN+ T+ G++I
Sbjct: 331 IRNILQFEEDYPDATTILLEQNYRSTQTILSAANAVIERNESR-RPKNLWTNAGDGARIT 389
Query: 582 IKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN 641
E + F+ D+I G A G +A+ YR +VF+ F +P+
Sbjct: 390 GYVADTEHDEAQFVADEIDRLTDAGDAKA---GDVAVFYRTNAQSRVFEEIFIRVGLPYK 446
Query: 642 -IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTI 700
+ GV FY +K VR ++A LR D+ P RR+ + ++ R ID ++
Sbjct: 447 VVGGVRFYERKEVRDVLAYLRVLANPEDNVPLRRILN---VPKRGIGDRAEAMIDALALR 503
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
K +F A + A G RS R +L +E + + + V+ +V
Sbjct: 504 EKITFPQALRRVDEAY--GMAARSANAVKRFNVL-MEELRTITESGAGPAVVLEAVLERT 560
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
YL E +A D +D LQ L A +F + ++EEG
Sbjct: 561 --GYLAELQASTD-------PQDETRIENLQELAAVALEFEQAR---SEEEG-------- 600
Query: 821 CINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
L F++ ++ +++ + + +TL T+H +KGLE+ +VF+ + P
Sbjct: 601 -AGTLAEFLEQVALVADSDQIPDEDEEGSGVITLMTLHTAKGLEFPVVFLTGMEDGVFPH 659
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSRFLKEIP 936
+ G E +EEERRL YV +TRAR++L++ M + W PSRFL+EIP
Sbjct: 660 MRAL-GQTKE----LEEERRLAYVGITRARERLYLTRSSMRSAWGQPSYNPPSRFLEEIP 714
Query: 937 -HHL 939
HL
Sbjct: 715 VQHL 718
>gi|340751683|ref|ZP_08688493.1| ATP-dependent DNA helicase pcrA [Fusobacterium mortiferum ATCC
9817]
gi|229420647|gb|EEO35694.1| ATP-dependent DNA helicase pcrA [Fusobacterium mortiferum ATCC
9817]
Length = 726
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 216/726 (29%), Positives = 350/726 (48%), Gaps = 121/726 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LND+Q EAA + LLI+AG GSGK GISP ILA+TFT
Sbjct: 4 LDKLNDKQREAAA-KIEGALLILAGAGSGKTRTITYRIAHMIDEIGISPYKILAVTFTNK 62
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ S+VG+ AK + ISTFHSF L+L R + ++L + F IY Q+R
Sbjct: 63 AAKEMKERVESLVGE-DAKRVMISTFHSFGLRLLRVYGDRLGYNANFTIYDTDDQKR--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
V K I D++ D + L S+ S K + D
Sbjct: 119 ------------VAKNIMKDLVVKDKS----------LKEGLVASIIS-------KLKED 149
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
G ++ +T ++ G +I A + YN +L++ NA+D+ D++ + +LL P+V
Sbjct: 150 G--ISPDEYETTEKYNDNG-KIVAEVYRRYNSVLKNNNAMDFSDILVNTDRLLD-IPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLL-QILASHNRITIVGDDDQSIFSFNGADISGFDSF 528
+ Q+ ++ I+VDE+QDT+ +QY ++ +I + I +VGD++QSI+ F GA+I F
Sbjct: 206 DKVQEKFRYIMVDEYQDTNNIQYKIVNKIAKKYGNICVVGDENQSIYGFRGANIQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N ++L NYRST I++AA+S+I++N + K + T + G KI ++ C++
Sbjct: 266 EKDYPNATVVKLEENYRSTSVILDAANSVIRNN-SSARDKKLWTKKTVGEKITVEGCYDG 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAF 647
+ F++ +I++ + G ILYR ++F+ IP+ I G+ F
Sbjct: 325 REEAGFVVGEIIKGKAKGAKYK----DFTILYRTNAQSRMFEEKLLRENIPYKIFGGMQF 380
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH-IDKISTIRKCSFI 706
Y++ ++ I+A L D+ R+ K+++ D ++KI K +
Sbjct: 381 YQRAEIKDIVAYLAVINNTTDNLNLARILNV-------PKRKIGDKTVEKIEDFAKEQNL 433
Query: 707 SAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLL 766
S +F A R+ G L + ++ NM+
Sbjct: 434 S----LFSA-----LGRANEIAGLSANLKITLL---------------DFYNMM------ 463
Query: 767 EQRAVVDFDGGKLLNE--DNDLRSVL--QYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
R ++ G ++E D +R + YL+A+ D+ + K + + ++ + +K
Sbjct: 464 --REFIELSEGINVSELFDTIVREIKYSDYLIANYEDYEARKENIEELKNSIVELEKVVE 521
Query: 823 NV-LKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
N+ L+ +++ IS T++ D ++ V L TIH SKGLE+ VFV E P
Sbjct: 522 NLTLREYLENISLVSATDNL----EDEKDYVKLMTIHNSKGLEFPTVFVVGVEEGLFP-- 575
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDAN--WQLLQPSRFLKEI 935
+ +EEERRL YVA+TRA KL++ Y MM N W +PSRFL EI
Sbjct: 576 ---GSRADFDSNELEEERRLCYVAITRAEDKLYMTYAKSRMMYGNEDWG-REPSRFLDEI 631
Query: 936 PHHLRE 941
P L E
Sbjct: 632 PKELIE 637
>gi|420174167|ref|ZP_14680621.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM061]
gi|394245307|gb|EJD90622.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM061]
Length = 729
Score = 250 bits (639), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 218/734 (29%), Positives = 348/734 (47%), Gaps = 119/734 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++++N +Q EA PLLI+AG GSGK +SP NILA+TFT
Sbjct: 5 VKNMNSEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ ++I
Sbjct: 64 AAKEMKTRVEHLVGEE-AQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQK-SVI 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ V EN + KR M G ++ L
Sbjct: 122 KDVLKSEN---IDSKRFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP + +K + ++ A + + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PE + YQ+ ++ I VDE+QDT+ QY+L+++LA+ + +VGD DQSI+ + GADI
Sbjct: 203 PETLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ K I L +NYRST+ I+ AA+ +I+HN +R + K + T NS G KI E
Sbjct: 263 ILSFEEDYPEAKTIFLEQNYRSTKNILNAANEVIKHNSER-KPKGLWTANSGGDKIQYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++H G Y +AILYR +V + F + IP+ +
Sbjct: 322 AMTERDEAEYVVKEIMKHQRGGK----KYSEMAILYRTNAQSRVLEETFMKSNIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR I ++KI T
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINV--------PKRGIGPSSVEKIQTYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + G K+ +TQ + + EMI L++ + + I+ + + V
Sbjct: 430 LQNNISMFDALAEVDFIGLSKK--VTQ--ECISFYEMIQNLIKEQEFLE--ISEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
QK G K +L+ + + S + L ++ +F+S E N +++
Sbjct: 484 QK-----------SGYKDMLDREQSIES--RSRLENLDEFMS---VPKDYEENTPLEEQS 527
Query: 821 CINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
IN L + + I E +T +N VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 528 LINFLTDLSLVADIDEADT----------QNGVTLMTMHSAKGLEFPIVFIMGMEESLFP 577
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
+ +E +EEERR+ YVA+TRA + L+I M+ Q PSRFLKEI
Sbjct: 578 HIRAIK---SEDDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKEI 634
Query: 936 PHHLREVQAEQSVQ 949
P L + Q Q
Sbjct: 635 PEDLLDSHTGQKRQ 648
>gi|345015892|ref|YP_004818246.1| ATP-dependent DNA helicase PcrA [Streptomyces violaceusniger Tu
4113]
gi|344042241|gb|AEM87966.1| ATP-dependent DNA helicase PcrA [Streptomyces violaceusniger Tu
4113]
Length = 824
Score = 250 bits (639), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 215/727 (29%), Positives = 335/727 (46%), Gaps = 112/727 (15%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTF 286
S L LN+QQ AA +PLLIVAG GSGK G P ILA+TF
Sbjct: 70 SALLDGLNEQQ-RAAVEHTGSPLLIVAGAGSGKTRVLTHRIAYLLGARGTHPGQILAITF 128
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR 346
T AA EM++R+ +VG A + +STFHS +++ R ++KL TS F IY +R
Sbjct: 129 TNKAAGEMKERVEELVGP-RANAMWVSTFHSACVRILRRESKKLGFTSSFSIYDAADSKR 187
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
+ R L+ L KR F SF + +
Sbjct: 188 LMSLVCRDLD----LDPKR---------------------------FPPKSFS-AKVSNL 215
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
+ + +D +G+ F K E A Y LR NALD+ D+I +V LL FP
Sbjct: 216 KNELIDEETFAGQATDGFEKTLAEAYAM----YQARLREANALDFDDIIMTTVNLLQAFP 271
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-------RITIVGDDDQSIFSFNG 519
+V + Y+ ++ ++VDE+QDT+ QY+L++ L + + +VGD DQSI++F G
Sbjct: 272 DVAEHYRRRFRHVLVDEYQDTNHAQYTLVRELVGTDTEETTAAELCVVGDADQSIYAFRG 331
Query: 520 ADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSK 579
A I F +D+ + I L +NYRST+ I+ AA+++I+ N R + KN+ T+ G++
Sbjct: 332 ATIRNILQFEEDYPTARTILLEQNYRSTQTILSAANAVIERNENR-RPKNLWTEAGAGTE 390
Query: 580 IIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIP 639
I E + F+ D+I G A G +A+ YR +VF+ F +P
Sbjct: 391 ITGYVADTEHDEAQFVADEIDRLTDAGDAKA---GDVAVFYRTNAQSRVFEEIFIRVGLP 447
Query: 640 FN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIS 698
+ + GV FY +K VR ++A LR D P RR+ + ++ +R ID ++
Sbjct: 448 YKVVGGVRFYERKEVRDVLAYLRVLANPEDSVPLRRILN---VPKRGIGERAEAMIDALA 504
Query: 699 TIRKCSFISA---ACDIFG--AKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI 753
K +F A D +G A+ + KR +E + +V + V+
Sbjct: 505 LREKITFPQALRRVDDAYGMAARSANAVKRFN--------TLMEELHTIVESGAGPATVL 556
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
+V YL E +A D +D LQ L A +F E +
Sbjct: 557 EAVLERT--GYLAELQASTD-------PQDETRIENLQELAAVALEF----------EQD 597
Query: 814 VDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKA 872
++ G L F++ ++ +++ + D +TL T+H +KGLE+ +VF++
Sbjct: 598 RGEENPGT---LADFLEQVALVADSDQIPDEDTDGSGVITLMTLHTAKGLEFPVVFLSGM 654
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPS 929
+ P + G E +EEERRL YV +TRAR++L++ M + W PS
Sbjct: 655 EDGVFPHMRAL-GQTKE----LEEERRLAYVGITRARERLYLTRSTMRSAWGQPAYNPPS 709
Query: 930 RFLKEIP 936
RFL+EIP
Sbjct: 710 RFLEEIP 716
>gi|239638038|ref|ZP_04678997.1| ATP-dependent DNA helicase PcrA [Staphylococcus warneri L37603]
gi|239596321|gb|EEQ78859.1| ATP-dependent DNA helicase PcrA [Staphylococcus warneri L37603]
Length = 730
Score = 250 bits (639), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 215/727 (29%), Positives = 345/727 (47%), Gaps = 121/727 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++++N +Q EA PLLI+AG GSGK +SP NILA+TFT
Sbjct: 5 VKNMNAEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAKEMKARVEQLVGEE-AQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I KR M G ++ L
Sbjct: 123 D---VLKNENI-DSKRFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP + +K + ++ A + + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PE + YQ+ ++ I VDE+QDT+ QY+L+++LA+ + +VGD DQSI+ + GADI
Sbjct: 203 PEALEYYQNKFQYIHVDEYQDTNKAQYTLIKLLANKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ + K I L +NYRST+ I+ AA+ +I++N +R + K + T N+ G KI E
Sbjct: 263 ILSFEEDYPDAKTIFLEQNYRSTKTILNAANEVIKNNTER-KPKGLWTANTGGDKINYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++H NG Y +AILYR +V + F + IP+ +
Sbjct: 322 ATTERDEAEYVVREIMKHQRNGK----KYSDMAILYRTNAQSRVLEETFMKSNIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR + ++KI T
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINV--------PKRGVGPSSVEKIQTYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREP--SISAVITSVANM 759
+ IS + G K+ +TQ + + EMI L++ + IS ++ V +
Sbjct: 430 VQNNISMFDALGEVDFIGLSKK--VTQ--ECIAFYEMIQNLIKEQEFLEISEIVEEV--L 483
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
V Y +L+ + L S + L ++ +F+S E N +++
Sbjct: 484 VKSGY------------RDMLDREQTLES--RSRLENLDEFMS---VPKDYEENTPLEEQ 526
Query: 820 GCINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
IN L + + I E D E+ VTL T+H +KGLE+ IVF+ E+
Sbjct: 527 SLINFLTDLSLVADIDE----------ADTESGVTLMTMHSAKGLEFPIVFIMGMEESLF 576
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKE 934
P + ++ +EEERR+ YVA+TRA + L+I M+ Q PSRFLKE
Sbjct: 577 PHIRAIK---SDDDHEMEEERRICYVAITRAEETLYITNATTRMLFGRSQSNMPSRFLKE 633
Query: 935 IPHHLRE 941
IP L E
Sbjct: 634 IPEDLME 640
>gi|300781705|ref|ZP_07091559.1| ATP-dependent DNA helicase PcrA [Corynebacterium genitalium ATCC
33030]
gi|300533412|gb|EFK54473.1| ATP-dependent DNA helicase PcrA [Corynebacterium genitalium ATCC
33030]
Length = 764
Score = 250 bits (639), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 223/765 (29%), Positives = 353/765 (46%), Gaps = 110/765 (14%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAA 291
LN QQ +AA +PLLIVAG GSGK G++P ILA+TFT AA
Sbjct: 8 GLNPQQ-KAAVEHTGSPLLIVAGAGSGKTAVLTRRIAYLLQERGVAPWEILAITFTNKAA 66
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAIIE 350
+EM++R+G+++G A+ + ++TFHS +++ R A+ + + F IY RR +
Sbjct: 67 AEMKERVGALIGP-QAERMWVATFHSVCVRILRQQAQLVPGLNTNFTIYDGDDSRRLL-- 123
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
++ E L +K+ S L +S+ K E G
Sbjct: 124 --GMIAKEMNLDLKKFSARTLAN--------------------GISNLK------NELIG 155
Query: 411 MDVAKASGKT---PAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ A A+ +T P E AA+ Y LR NA+D+ DLI V L P+
Sbjct: 156 PEEAAANAQTTKNPFEVTV------AAVYTQYQRRLREGNAVDFDDLIGEVVGLFKQHPQ 209
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN----RITIVGDDDQSIFSFNGADIS 523
V + Y+ ++ ++VDE+QDT+ QY L+ L + + +VGD DQSI++F GA I
Sbjct: 210 VVEYYRRRFRHVLVDEYQDTNHAQYELIHTLVGNGPDAPELAVVGDSDQSIYAFRGATIR 269
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
+ F +D+ N I L +NYRST+ I+ AA+++I N R + K + TD G KI+
Sbjct: 270 NIEEFERDYPNATTILLEQNYRSTQNILAAANAVIAQNAGR-RPKKLWTDTGTGEKIVGY 328
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-I 642
NE + F+ +I E G YG IA++YR S + + F +P+ +
Sbjct: 329 VADNEHDEARFVSTEIDELTDRG----VQYGDIAVMYRTNNSSRALEDIFIRAGVPYKVV 384
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAF-LLLEKEEKKRVIDHIDKISTIR 701
G FY ++ +R I+A LR D RR+ + + + V H D
Sbjct: 385 GGTRFYERREIRDIVAYLRILDNPDDSVSMRRIINVPKRAIGDKAQAMVALHADN----H 440
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKL------VRRE----PSISA 751
SF A D +I R++ G V EMI L +R E P + A
Sbjct: 441 GMSFGRALIDGAAGEIPTLGPRAKNAIGGFV----EMIQGLRDELPELRNEVTGMPDLGA 496
Query: 752 VITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEE 811
++T + ++ K LE A D G L+ N+L SV + ++ + ++ E
Sbjct: 497 LVTRILDVTGYKAELE--ASNDPQDGARLDNLNELVSVAREFSSEAANQMAYGEEWDPES 554
Query: 812 GNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAK 871
G + + G L+AF++ +S + + VTL T+H +KGLE+ +VFV
Sbjct: 555 G---EAQPGS---LQAFLERVS--LVADADQIPDEGQGVVTLMTLHTAKGLEFPVVFVTG 606
Query: 872 ANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW--QLLQP- 928
+ + P + + EERRL YV +TRAR++L++ + ++W + P
Sbjct: 607 WEDGQFPHMRAMGDP-----AELAEERRLAYVGITRARERLYLTRALTRSSWGSPMNNPA 661
Query: 929 SRFLKEIPHHL---REVQAEQSVQDQHENIPEGTAQFTINLPREE 970
SRFL E+P L R V+ E S ++ P + + +PR E
Sbjct: 662 SRFLAEVPEDLLDWRRVEPEYSFSNEAWGSPAPSRR---AMPRRE 703
>gi|417643672|ref|ZP_12293709.1| ATP-dependent DNA helicase PcrA [Staphylococcus warneri VCU121]
gi|445059251|ref|YP_007384655.1| ATP-dependent DNA helicase [Staphylococcus warneri SG1]
gi|330685592|gb|EGG97238.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU121]
gi|443425308|gb|AGC90211.1| ATP-dependent DNA helicase [Staphylococcus warneri SG1]
Length = 730
Score = 250 bits (639), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 215/727 (29%), Positives = 345/727 (47%), Gaps = 121/727 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++++N +Q EA PLLI+AG GSGK +SP NILA+TFT
Sbjct: 5 VKNMNAEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAKEMKARVEQLVGEE-AQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I KR M G ++ L
Sbjct: 123 D---VLKNENI-DSKRFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP + +K + ++ A + + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPEDAQKEANDYHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PE + YQ+ ++ I VDE+QDT+ QY+L+++LA+ + +VGD DQSI+ + GADI
Sbjct: 203 PEALEYYQNKFQYIHVDEYQDTNKAQYTLIKLLANKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ + K I L +NYRST+ I+ AA+ +I++N +R + K + T N+ G KI E
Sbjct: 263 ILSFEEDYPDAKTIFLEQNYRSTKTILNAANEVIKNNTER-KPKGLWTANTGGDKINYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++H NG Y +AILYR +V + F + IP+ +
Sbjct: 322 ATTERDEAEYVVREIMKHQRNGK----KYSDMAILYRTNAQSRVLEETFMKSNIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR + ++KI T
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINV--------PKRGVGPSSVEKIQTYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREP--SISAVITSVANM 759
+ IS + G K+ +TQ + + EMI L++ + IS ++ V +
Sbjct: 430 VQNNISMFDALGEVDFIGLSKK--VTQ--ECIAFYEMIQNLIKEQEFLEISEIVEEV--L 483
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
V Y +L+ + L S + L ++ +F+S E N +++
Sbjct: 484 VKSGY------------RDMLDREQTLES--RSRLENLDEFMS---VPKDYEENTPLEEQ 526
Query: 820 GCINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
IN L + + I E D E+ VTL T+H +KGLE+ IVF+ E+
Sbjct: 527 SLINFLTDLSLVADIDE----------ADTESGVTLMTMHSAKGLEFPIVFIMGMEESLF 576
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKE 934
P + ++ +EEERR+ YVA+TRA + L+I M+ Q PSRFLKE
Sbjct: 577 PHIRAIK---SDDDHEMEEERRICYVAITRAEETLYITNATTRMLFGRSQSNMPSRFLKE 633
Query: 935 IPHHLRE 941
IP L E
Sbjct: 634 IPEDLME 640
>gi|417886946|ref|ZP_12531086.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21195]
gi|341858578|gb|EGS99367.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus 21195]
Length = 730
Score = 250 bits (639), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 217/725 (29%), Positives = 343/725 (47%), Gaps = 117/725 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +N +Q EA PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I K+ M G ++ L
Sbjct: 123 D---VLKNENI-DSKKFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTPA+ +K ++ A + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV + YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 203 PEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF KD+ I L +NYRST+ I+ AA+ +I++N +R + K + T N++G KI E
Sbjct: 263 ILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + F+I +I++H NG Y +AILYR +V + F + +P+ +
Sbjct: 322 AMTERDEAEFVIREIMKHQRNGK----KYQDMAILYRTNAQSRVLEETFMKSNMPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR + ++K+
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINV--------PKRGVGPSSVEKVQNYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + A G K+ +TQ + L E+I L++ + + I + + V
Sbjct: 430 LQNNISMFDALGEADFIGLSKK--VTQ--ECLNFYELIQSLIKEQEFLE--IHEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
QK + +L +N L S + L ++ +F+S E N +++
Sbjct: 484 QKSGYRE----------MLERENTLES--RSRLENIDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E +T EN VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEADT----------ENGVTLMTMHSAKGLEFPIVFIMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ +E ++EERR+ YVA+TRA + L+I + M+ Q SRFLKEIP
Sbjct: 579 IRAIK---SEDDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMLSRFLKEIP 635
Query: 937 HHLRE 941
L E
Sbjct: 636 ESLLE 640
>gi|407648703|ref|YP_006812462.1| ATP-dependent DNA helicase [Nocardia brasiliensis ATCC 700358]
gi|407311587|gb|AFU05488.1| ATP-dependent DNA helicase [Nocardia brasiliensis ATCC 700358]
Length = 868
Score = 250 bits (638), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 217/743 (29%), Positives = 347/743 (46%), Gaps = 114/743 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN QQ AA PLLIVAG GSGK G++P +LA+TFT
Sbjct: 76 LDGLNPQQ-RAAVVHSGAPLLIVAGAGSGKTAVLTRRIAYLLAARGVTPGQVLAITFTNK 134
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLE-RTSEFLIYGHGQQRRAI 348
AA+EMR+R+ +VG A + +STFHS +++ R A L S F IY RR +
Sbjct: 135 AAAEMRERVTGLVGP-RANNMWVSTFHSSCVRILRMQAALLPGMNSNFSIYDADDSRRLL 193
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
++ + + K+ + +L T A + N ++ ++
Sbjct: 194 T----MISRDFDIDTKKYTARLLAT--------AISNLKNELIGPQQAT----------- 230
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D + PA + A + Y LR+ NALD+ DLI +V LL P+V
Sbjct: 231 --ADAESDETELPA--------LVARVYVEYQRRLRAANALDFDDLIGETVALLQNHPQV 280
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR------------ITIVGDDDQSIFS 516
+ Y+ ++ ++VDE+QDT+ QY L++ L H+R + +VGD DQSI++
Sbjct: 281 AEYYRRRFRHVLVDEYQDTNHAQYVLVRELVGHHRAERNEDQAPPSELCVVGDADQSIYA 340
Query: 517 FNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSH 576
F GA I + F +DF + + I L +NYRST+ I+ AA+++I N R K + TD+
Sbjct: 341 FRGATIRNIEEFERDFPDAETILLEQNYRSTQHILSAANAVISRNENRRD-KKLWTDSGE 399
Query: 577 GSKIIIKECHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
G I NE + +F+ ID++++ +Y +A+ YR + + + F
Sbjct: 400 GDLITGYVADNEHDEASFVAREIDRLVDQGE------ANYSDVAVFYRTNNNSRALEEIF 453
Query: 634 RERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDG-PYRRVFKAFLLLEKEEKKRVI 691
+P+ + GV FY +K VR I+A LR L DD RR+ ++ +
Sbjct: 454 IRMGLPYKVVGGVRFYERKEVRDIVAYLR-VLENPDDAVSLRRILNT-------PRRGIG 505
Query: 692 DHIDKISTI----RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRRE- 746
D + + R F +A D K++ R+Q + L E+ + V+ +
Sbjct: 506 DRAEACVAVHAEQRGIGFAAALRDAADGKVALLNTRAQRAIAGFLDLLEEIRAAGVQEDL 565
Query: 747 --PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTK 804
P + V+ +V Y E A D G L+ N+L SV + ++ +
Sbjct: 566 DFPDVGNVVDAVLERT--GYRGELEASDDPQDGARLDNLNELVSVAREFSSEAPN----N 619
Query: 805 FTAAKEEGNVDQDKKGCINV--LKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKG 861
AA+EEG + + +G + L AF++ +S +T+ + VT+ T+H +KG
Sbjct: 620 AEAAREEGLLPEVAEGEPDPGSLAAFLERVSLVADTDQIPDE---GTGVVTMMTLHTAKG 676
Query: 862 LEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDA 921
LE+ +VFV + + P + T + EERRL YV +TRARK+L++ ++ +
Sbjct: 677 LEFPVVFVTGWEDGQFPHMRALGDP-----TELAEERRLAYVGITRARKRLYLSRAVVRS 731
Query: 922 NWQLLQP-----SRFLKEIPHHL 939
W QP SRFL+EIP HL
Sbjct: 732 GWG--QPVSNPESRFLQEIPGHL 752
>gi|333377943|ref|ZP_08469676.1| hypothetical protein HMPREF9456_01271 [Dysgonomonas mossii DSM
22836]
gi|332883963|gb|EGK04243.1| hypothetical protein HMPREF9456_01271 [Dysgonomonas mossii DSM
22836]
Length = 782
Score = 250 bits (638), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 203/726 (27%), Positives = 347/726 (47%), Gaps = 101/726 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
L LN QQ EA + S P LI+AG GSGK G P +ILA+TFT A
Sbjct: 5 LDQLNKQQREAVEYN-SGPSLIIAGAGSGKTRVLTYKIAYLMQQGYHPQSILALTFTNKA 63
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIE 350
A EM++RI ++G A+ L + TFHS ++ R+ AE++ T+ F IY R I
Sbjct: 64 AREMKERIAQLIGWQYARYLWMGTFHSVFSRILRTEAERIGFTANFTIYDSADSRNLIKN 123
Query: 351 AVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++ E ++K+ R+ + + ++ + + ++ N +L +Y++ +
Sbjct: 124 IIKQFELDDKVYKPARVQS--IISNAKNALISSQMYAQNK---------ELIEYDQRAKM 172
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
M I D I YN L++ N +D+ DL+ + +L P+V
Sbjct: 173 AM---------------IKD-----IYREYNNRLKASNTMDFDDLLFYTNRLFRDHPDVL 212
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDSF 528
YQ+ ++ I+VDE+QDT+ QY +++ LA +H+R+ +VGDD QSI+SF GA+I F
Sbjct: 213 AAYQERYQFILVDEYQDTNFAQYLVVKQLADAHHRVCVVGDDAQSIYSFRGANIENILKF 272
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
++ + K +L +NYRST+ IV AA+SLI+ N + + K + ++N G ++ + +++
Sbjct: 273 KEVYPEAKLFKLEQNYRSTQNIVNAANSLIKQNKDQIK-KTIYSENEEGDRLEVTSAYSD 331
Query: 589 DAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GV 645
+ + +KI L N P Y ILYR ++F+ A R++ IP+ I+ G+
Sbjct: 332 FEEGVIVSNKIWDLRRDKNAP-----YSEFVILYRTNAQSRIFEEALRKKNIPYRIYGGL 386
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSF 705
+FY++K ++ +I R + D+ +RR+ + ++ I + + S
Sbjct: 387 SFYQRKEIKDVIGYFRMVVNPYDEEAFRRIVN---FPTRGIGNTTLNKIADAARLHNVSL 443
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYL 765
+ G + ++ G K E+I + + +SA +A + ++
Sbjct: 444 WEVISNPLGFNLDVNAGTAKKLAGFK-----ELIESFIAQLQELSAY--ELATRIVKESG 496
Query: 766 LEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVL 825
+ A D + ++N LQ LL + ++ ++ +EEG G I ++
Sbjct: 497 IASDAYQDQTPEGMSRQEN-----LQELLGGIHEYCESR----QEEG------LGGIGLM 541
Query: 826 KAFIDYISERETEHFR-TQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV---H 881
D++SE + T + ++ VT+ TIH +KGLE++ VFV E P
Sbjct: 542 ----DFLSEVSLLSDQDTDKEADKEKVTMMTIHAAKGLEFNNVFVVGLEEDLFPSAMAKD 597
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHH 938
EF G +EEERRL YVA+TRA++ I Y + PSRFL++I
Sbjct: 598 EFRG--------LEEERRLFYVAITRAKEFCMITYAKSRFRNGQINACNPSRFLRDIDTD 649
Query: 939 LREVQA 944
V A
Sbjct: 650 YLNVNA 655
>gi|86133361|ref|ZP_01051943.1| UvrD/REP helicase [Polaribacter sp. MED152]
gi|85820224|gb|EAQ41371.1| UvrD/REP helicase [Polaribacter sp. MED152]
Length = 774
Score = 250 bits (638), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 216/726 (29%), Positives = 344/726 (47%), Gaps = 118/726 (16%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
YL SLN+ Q +A P++I+AG GSGK G+ NIL++TFT
Sbjct: 4 YLDSLNEPQKQAVL-QKDGPMIIIAGAGSGKTRVLTYRIAHLMQSGVDAFNILSLTFTNK 62
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++RI +VG++ AK L + TFHS ++ RS A+KL S F IY
Sbjct: 63 AAREMKERIAGVVGQSEAKNLWMGTFHSVFARILRSEADKLGFPSNFTIYDTQ------- 115
Query: 350 EAVRLLENEKILVVKRISTDMLTTD-----GHFGYMRASLFMMNAMLFFSMSSFKLCQYN 404
++VRL+ ++K ++ D G + SL + A
Sbjct: 116 DSVRLMGT----IIKEMNLDKERYKPKQILGRISSFKNSLITVRAY-------------- 157
Query: 405 KFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLST 464
F + A P K+GD I Y A+D+ DL+ + +LL+
Sbjct: 158 -FNNSDLQEADMHASRP----KVGD-----IYREYVDRCFKSGAMDFDDLLLRTNELLAR 207
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADIS 523
FP+V +YQD ++ I+VDE+QDT+ QY +++ LA I +VGDD QSI+SF GA+I
Sbjct: 208 FPDVLAKYQDRFRYIMVDEYQDTNHSQYIIVRALADRFQNICVVGDDSQSIYSFRGANIQ 267
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
+F+KD+ + K +L +NYRST+ IV AA+S+I N + K V T N G I +
Sbjct: 268 NILNFQKDYPDVKTFKLEQNYRSTKNIVNAANSVIARNKTKLD-KEVWTSNDAGDSINVM 326
Query: 584 ECHNEDAQCAFIIDKILEHASN---GPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
++ + F+ I E+ N P + C +LYR + + A R++ I +
Sbjct: 327 RTISDGEEGRFVAQSIWENMMNHQLTPDNFC------VLYRTNSQSRAIEDALRKKNIDY 380
Query: 641 NIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDK--- 696
I+ G++FY++K ++ I++ LR + D+ E KR+I++ +
Sbjct: 381 TIYGGISFYQRKEIKDILSYLRILINPNDE---------------EALKRIINYPARGIG 425
Query: 697 ISTIRKCSFIS--AACDIFGAKISGTFKRSQLTQGRKVLLT--LEMISKLVRREPSISAV 752
+TI + + + IF ++ G K L + MI +L + +A
Sbjct: 426 ATTIDRLTIAANHYKKSIFEIIKYIDKIDIKINSGTKKKLQNFMNMILRLQIEAQTKNAF 485
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
+A +V + E R + D + + + +V Q LL + DF++ K EEG
Sbjct: 486 --EIAEVVVK----ETRLIKDLEKDGTPEAVSKVENV-QELLNGIKDFITDKI----EEG 534
Query: 813 NVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKA 872
+D L F++ ++ F +++ +++ SV+L TIHQSKGLE+ V++
Sbjct: 535 ---EDAS-----LTTFLEDVA--LATDFDSKKDNDKPSVSLMTIHQSKGLEYLYVYIVGL 584
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPS 929
E P N + +EEERRL YVA+TRA K ++ Y W L +PS
Sbjct: 585 EENLFPSAMSMNTR-----SELEEERRLFYVALTRAEKVAYLSYAQTRYRWGKLVDAEPS 639
Query: 930 RFLKEI 935
RFL+EI
Sbjct: 640 RFLEEI 645
>gi|418631485|ref|ZP_13193947.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU128]
gi|420193350|ref|ZP_14699203.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM023]
gi|374835247|gb|EHR98867.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU128]
gi|394259995|gb|EJE04818.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM023]
Length = 729
Score = 250 bits (638), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 218/734 (29%), Positives = 348/734 (47%), Gaps = 119/734 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++++N +Q EA PLLI+AG GSGK +SP NILA+TFT
Sbjct: 5 VKNMNSEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ ++I
Sbjct: 64 AAKEMKARVEHLVGEE-AQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQK-SVI 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ V EN + KR M G ++ L
Sbjct: 122 KDVLKSEN---IDSKRFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP + +K + ++ A + + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PE + YQ+ ++ I VDE+QDT+ QY+L+++LA+ + +VGD DQSI+ + GADI
Sbjct: 203 PETLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ K I L +NYRST+ I+ AA+ +I+HN +R + K + T NS G KI E
Sbjct: 263 ILSFEEDYPEAKTIFLEQNYRSTKNILNAANEVIKHNSER-KPKGLWTANSGGDKIQYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++H G Y +AILYR +V + F + IP+ +
Sbjct: 322 AMTERDEAEYVVKEIMKHQRGGK----KYSEMAILYRTNAQSRVLEETFMKSNIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR I ++KI T
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINV--------PKRGIGPSSVEKIQTYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + G K+ +TQ + + EMI L++ + + I+ + + V
Sbjct: 430 LQNNISMFDALAEVDFIGLSKK--VTQ--ECISFYEMIQNLIKEQEFLE--ISEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
QK G K +L+ + + S + L ++ +F+S E N +++
Sbjct: 484 QK-----------SGYKDMLDREQSIES--RSRLENLDEFVS---VPKDYEENTPLEEQS 527
Query: 821 CINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
IN L + + I E +T +N VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 528 LINFLTDLSLVADIDEADT----------QNGVTLMTMHSAKGLEFPIVFIMGMEESLFP 577
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
+ +E +EEERR+ YVA+TRA + L+I M+ Q PSRFLKEI
Sbjct: 578 HIRAIK---SEDDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKEI 634
Query: 936 PHHLREVQAEQSVQ 949
P L + Q Q
Sbjct: 635 PEDLLDSHTGQKRQ 648
>gi|418615453|ref|ZP_13178397.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU118]
gi|374817416|gb|EHR81600.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU118]
Length = 729
Score = 250 bits (638), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 217/735 (29%), Positives = 346/735 (47%), Gaps = 121/735 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++++N +Q EA PLLI+AG GSGK +SP NILA+TFT
Sbjct: 5 VKNMNSEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ ++I
Sbjct: 64 AAKEMKARVEHLVGEE-AQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQK-SVI 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ V EN + KR M G ++ L
Sbjct: 122 KDVLKSEN---IDSKRFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP + +K + ++ A + + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PE + YQ+ ++ I VDE+QDT+ QY+L+++LA+ + +VGD DQSI+ + GADI
Sbjct: 203 PETLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ K I L +NYRST+ I+ AA+ +I+HN +R + K + T NS G KI E
Sbjct: 263 ILSFEEDYPEAKTIFLEQNYRSTKNILNAANEVIKHNSER-KPKGLWTANSGGDKIQYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++H G Y +AILYR +V + F + IP+ +
Sbjct: 322 AMTERDEAEYVVKEIMKHQRGGK----KYSEMAILYRTNAQSRVLEETFMKSNIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR I ++KI T
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINV--------PKRGIGPSSVEKIQTYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREP--SISAVITSVANM 759
+ IS + G K+ +TQ + + EMI L++ + IS ++ V
Sbjct: 430 LQNNISMFDALAEVDFIGLSKK--VTQ--ECISFYEMIQNLIKEQEFLEISEIVDEVLRK 485
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
K +L++ ++ RS L+ ++ +F+S E N +++
Sbjct: 486 SGYKDMLDREQSIES------------RSRLE----NLDEFMS---VPKDYEENTPLEEQ 526
Query: 820 GCINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
IN L + + I E +T +N VTL T+H +KGLE+ IVF+ E+
Sbjct: 527 SLINFLTDLSLVADIDEADT----------QNGVTLMTMHSAKGLEFPIVFIMGMEESLF 576
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKE 934
P + +E +EEERR+ YVA+TRA + L+I M+ Q PSRFLKE
Sbjct: 577 PHIRAIK---SEDDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKE 633
Query: 935 IPHHLREVQAEQSVQ 949
IP L + Q Q
Sbjct: 634 IPEDLLDSHTGQKRQ 648
>gi|290967937|ref|ZP_06559487.1| ATP-dependent DNA helicase PcrA [Megasphaera genomosp. type_1 str.
28L]
gi|335048757|ref|ZP_08541772.1| ATP-dependent DNA helicase PcrA [Megasphaera sp. UPII 199-6]
gi|290782076|gb|EFD94654.1| ATP-dependent DNA helicase PcrA [Megasphaera genomosp. type_1 str.
28L]
gi|333765011|gb|EGL42383.1| ATP-dependent DNA helicase PcrA [Megasphaera sp. UPII 199-6]
Length = 738
Score = 249 bits (637), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 228/764 (29%), Positives = 359/764 (46%), Gaps = 110/764 (14%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAAS 292
LN++Q EA PLLI AG GSGK G++P ILA+TFT AA
Sbjct: 7 GLNERQAEA-VRQTEGPLLITAGAGSGKTKVLTCRIAYLLEKGVAPYRILAITFTNKAAK 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAE-KLERTSEFLIYGHGQQRRAIIEA 351
EMR+R+ +VG+ TAK + +STFHSF +L R + T F IY Q + E
Sbjct: 66 EMRERVEKLVGE-TAKSMWLSTFHSFCAKLLRFEIDGHFGYTRNFTIYDSTDQLTVVKEC 124
Query: 352 VRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
V++L +EK + I ++S K Y
Sbjct: 125 VKILNLDEKNFPPRTI-------------------------LGTISEAKNLLYT------ 153
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
A + A+F K + A + Y L+ NALD+ DL+S +V+LL + +
Sbjct: 154 ---ASEYSRQAADFYK---QKVAEVFRLYEQKLKESNALDFDDLLSYAVRLLKEDAGIRE 207
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDSFR 529
+YQ ++ I+VDE+QDT+ QY L +ILA R I +VGD DQSI+++ GADI F
Sbjct: 208 KYQQRFQYILVDEYQDTNRAQYLLTKILAEKWRNICVVGDADQSIYAWRGADIRNIIEFT 267
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
+D+ + I+L +NYRST+ I++AA+++I++N +R Q K + T+N G KII E
Sbjct: 268 RDYGDAATIKLEQNYRSTKTILQAANAVIENNEERPQ-KVLWTENEEGKKIIHYAAQTEH 326
Query: 590 AQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFY 648
+ ++ I G YG +AIL+R +V + +P+ + G FY
Sbjct: 327 DEAEYVAGCIYNRHEIGGE---PYGDMAILFRTNAQSRVLEEKLMRHAVPYTMVGGTKFY 383
Query: 649 RKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISA 708
+K V+ ++A LR D R+ + ++ K ++ I + R+ SF A
Sbjct: 384 DRKEVKDVLAYLRLLQNQQDSVSLLRIIN---VPKRNIGKTTLEKIGAYAEDRQISFFMA 440
Query: 709 ACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQ 768
+ I+ KRS + E ++L ++ +++ +V + LLE+
Sbjct: 441 LTEAEEIDITARAKRSIADFTALMCDLAEKATQL-----NVFSLLEAVLHDTGYAALLEK 495
Query: 769 RAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAF 828
A + G ++ + LL+ D+L T E+GN+ QD + L +
Sbjct: 496 EAAHEVQG-------ESRKANVGELLSVAKDYLQT-----NEDGNL-QDFLENV-ALVSD 541
Query: 829 IDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVN 888
+D SE N+++VTL T+H +KGLE+ +VF+ +E P N
Sbjct: 542 VDSFSE------------NDSNVTLMTLHAAKGLEFPVVFLVGMDEGLFP-----NARTL 584
Query: 889 EKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSRFLKEIPHHLREVQA- 944
+VEEERRL YV +TRA ++L++ + A + + PSRFL EIP HL V
Sbjct: 585 MSTAAVEEERRLAYVGITRAERQLYVTNAVTRAMYGRITSYLPSRFLTEIPPHLMTVHKP 644
Query: 945 ----EQSVQDQHENIP-EGTAQFTI-NLPREENCCETDLVSTDF 982
++ EN GT + +I + P + + ++VSTDF
Sbjct: 645 AAGLSRTGTGNRENFSVAGTQRVSILSKPITTHLPKKNVVSTDF 688
>gi|418634401|ref|ZP_13196796.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU129]
gi|420190741|ref|ZP_14696681.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM037]
gi|420204831|ref|ZP_14710370.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM015]
gi|374837258|gb|EHS00827.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU129]
gi|394258420|gb|EJE03303.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM037]
gi|394271755|gb|EJE16241.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM015]
Length = 729
Score = 249 bits (637), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 218/734 (29%), Positives = 348/734 (47%), Gaps = 119/734 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++++N +Q EA PLLI+AG GSGK +SP NILA+TFT
Sbjct: 5 VKNMNSEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ ++I
Sbjct: 64 AAKEMKARVEHLVGEE-AQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQK-SVI 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ V EN + KR M G ++ L
Sbjct: 122 KDVLKSEN---IDSKRFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP + +K + ++ A + + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PE + YQ+ ++ I VDE+QDT+ QY+L+++LA+ + +VGD DQSI+ + GADI
Sbjct: 203 PETLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ K I L +NYRST+ I+ AA+ +I+HN +R + K + T NS G KI E
Sbjct: 263 ILSFEEDYPEAKTIFLEQNYRSTKNILNAANEVIKHNSER-KPKGLWTANSGGDKIQYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++H G Y +AILYR +V + F + IP+ +
Sbjct: 322 AMTERDEAEYVVKEIMKHQRGGK----KYSEMAILYRTNAQSRVLEETFMKSNIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR I ++KI T
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINV--------PKRGIGPSSVEKIQTYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + G K+ +TQ + + EMI L++ + + I+ + + V
Sbjct: 430 LQNNISMFDALAEVDFIGLSKK--VTQ--ECISFYEMIQNLIKEQEFLE--ISEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
QK G K +L+ + + S + L ++ +F+S E N +++
Sbjct: 484 QK-----------SGYKDMLDREQSIES--RSRLENLDEFMS---VPKDYEENTPLEEQS 527
Query: 821 CINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
IN L + + I E +T +N VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 528 LINFLTDLSLVADIDEADT----------QNGVTLMTMHSAKGLEFPIVFIMGMEESLFP 577
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
+ +E +EEERR+ YVA+TRA + L+I M+ Q PSRFLKEI
Sbjct: 578 HIRAIK---SEDDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKEI 634
Query: 936 PHHLREVQAEQSVQ 949
P L + Q Q
Sbjct: 635 PEDLLDSHTGQKRQ 648
>gi|314934070|ref|ZP_07841433.1| ATP-dependent DNA helicase PcrA [Staphylococcus caprae C87]
gi|313653181|gb|EFS16940.1| ATP-dependent DNA helicase PcrA [Staphylococcus caprae C87]
Length = 731
Score = 249 bits (637), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 213/727 (29%), Positives = 344/727 (47%), Gaps = 121/727 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++++N +Q EA PLLI+AG GSGK +SP NILA+TFT
Sbjct: 5 VKNMNTEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAKEMKERVEQLVGEE-AQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I KR M G ++ L
Sbjct: 123 D---VLKNENI-DSKRFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP + +K + ++ A + + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPDDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
P+ + YQ+ ++ I VDE+QDT+ QY+L+++LA+ + +VGD DQSI+ + GADI
Sbjct: 203 PDALEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ K I L +NYRST+ I+ AA+ +I++N +R + K + T N+ G KI E
Sbjct: 263 ILSFEEDYPEAKTIFLEQNYRSTKNILNAANEVIKNNSER-KPKGLWTANTGGDKIQYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++H NG Y +AILYR +V + F + IP+ +
Sbjct: 322 AMTERDEAEYVVKEIMKHQRNGK----KYSDMAILYRTNAQSRVLEETFMKSNIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR I ++KI T
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINV--------PKRGIGPSSVEKIQTYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREP--SISAVITSVANM 759
S IS + G K+ +TQ + + E I+ L++ + IS ++ V
Sbjct: 430 VQSNISMFDALGEVDFIGLSKK--VTQ--ECINFYETITHLIKEQEFLEISEIVEEVLQK 485
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
+ +LE+ ++ RS L+ ++ +F+S E N +++
Sbjct: 486 SGYRDMLEREQTLES------------RSRLE----NLDEFMS---VPKDYEENTPLEEQ 526
Query: 820 GCINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
IN L + + YI E D + VT+ T+H +KGLE+ IVF+ E+
Sbjct: 527 SLINFLTDLSLVAYIDE----------ADTQTGVTMMTMHSAKGLEFPIVFIMGMEESLF 576
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKE 934
P + + +EEERR+ YVA+TRA + L+I M+ Q PSRFLKE
Sbjct: 577 PHIRAIKA---DDDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKE 633
Query: 935 IPHHLRE 941
IP L E
Sbjct: 634 IPEELLE 640
>gi|340350748|ref|ZP_08673722.1| ATP-dependent DNA helicase PcrA [Prevotella nigrescens ATCC 33563]
gi|339607125|gb|EGQ12075.1| ATP-dependent DNA helicase PcrA [Prevotella nigrescens ATCC 33563]
Length = 811
Score = 249 bits (637), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 213/726 (29%), Positives = 347/726 (47%), Gaps = 110/726 (15%)
Query: 245 LQSLNDQQLEAA--CGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTT 288
L LN+ Q EA C + P L+VAG GSGK G+ P ILA+TFT
Sbjct: 13 LAQLNESQREAVEYC---NGPSLVVAGAGSGKTRVLTYKIAYLIMYGVLPYRILALTFTN 69
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQR--- 345
AA EM++RIG++V K A L + TFHS ++ R+ A+++ S F IY R
Sbjct: 70 KAAREMKERIGNLVDKDLADRLYMGTFHSVFSRILRAEAQRIGYNSNFTIYDETDSRSLL 129
Query: 346 RAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNK 405
++II+ + L + + Y +++ + SM+ +L +
Sbjct: 130 KSIIKTLGLSDKD--------------------YKPSTVHSI-----ISMAKNQLVGADA 164
Query: 406 FERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
F + SG A+ + + + I Y R NA+D+ DL+ + +L +
Sbjct: 165 F---AVSNGGQSGLKGAKLKAV-----SQIYAAYQARCRQANAMDFDDLLVNTFRLFNEN 216
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISG 524
++ +Y + ++ I+VDE+QDT+ +Q +++++L A H RI +VGDD QSI+SF GA I
Sbjct: 217 ADIRNKYAERFQYILVDEYQDTNFVQVAIVKLLTAKHQRICVVGDDYQSIYSFRGASIDN 276
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
++K F N + +L RNYRSTR IVEAA+SL++HN ++ K+V ++ S G+KI +
Sbjct: 277 ILDYQKKFDNVQVFKLERNYRSTRKIVEAANSLMKHNARQIP-KDVYSEESEGAKISYRP 335
Query: 585 CHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI 642
C+++ + ++ +I L+ + + Y AILYR + F+ R+ IP+ I
Sbjct: 336 CYSDKEEAMVVVKEIKKLKRSQS-----FGYDGFAILYRTNAQSRSFEDELRKSAIPYKI 390
Query: 643 HG-VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
G ++FY++K ++ IIA R D+ ++R+ R I +T+
Sbjct: 391 FGGLSFYQRKEIKDIIAYFRLVANPNDEEAFKRIINY--------PARGIGG----TTLM 438
Query: 702 KCSFISAACDIFGAKISGTFKRSQL--TQGRKVLLT--LEMISKLVRREPSISAVITSVA 757
K ++A + + G R L +G LT +E+I+ +R + S A
Sbjct: 439 KIIDCASANEASLWDVIGNAARYNLDINKGTAAKLTAFVELINGFIRD------LAMSDA 492
Query: 758 NMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQD 817
+ K + E D G +D R L+ LLA + F+ + +EEG D+
Sbjct: 493 YTLGAKIIKESGIWADLAQGTA-PDDVARRENLEELLAGMQAFVDER----REEGRADE- 546
Query: 818 KKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
D++ E + D V+L TIH +KGLE+ +VFV E
Sbjct: 547 --------TFLTDFLQEVALYSDLDKADDGSPKVSLMTIHAAKGLEFPVVFVVGLEENIF 598
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSRFLKE 934
P N +EEERRLLYVA+TRA + ++ ++ +Q PSRFLK+
Sbjct: 599 P-----NAMAAGSRKELEEERRLLYVAITRAERFCYLTNAKNRYHFGTMQFNNPSRFLKD 653
Query: 935 I-PHHL 939
I P ++
Sbjct: 654 IDPAYI 659
>gi|376292860|ref|YP_005164534.1| putative ATP-dependent DNA helicase II [Corynebacterium diphtheriae
HC02]
gi|372110183|gb|AEX76243.1| putative ATP-dependent DNA helicase II [Corynebacterium diphtheriae
HC02]
Length = 828
Score = 249 bits (637), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 221/752 (29%), Positives = 348/752 (46%), Gaps = 121/752 (16%)
Query: 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAA 290
+ LN QQ +AA +PLLIVAG GSGK G+ P NILA+TFT A
Sbjct: 48 EGLNPQQ-KAAVEHYGSPLLIVAGAGSGKTSVLTRRIAYLMRVRGVQPQNILAITFTNKA 106
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAII 349
A+EMR+R+ S+VG A+ + +STFHS +++ R A+ + + F IY +R +
Sbjct: 107 AAEMRERVSSLVGP-VAQRMWVSTFHSTCVRVLREQAQLVPGLNTNFTIYDSDDSKRLL- 164
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++ + L +K+ + +L T +S+ K N+
Sbjct: 165 ---SMISKDFSLDIKKFTPRLLAT--------------------GISNLK----NELIDA 197
Query: 410 GMDVAKA-SGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
A A S K P E A++ Y LR+ NA+D+ DLI +V++ P V
Sbjct: 198 DQACADAESTKNPYE------TTIASVFAEYQKRLRASNAVDFDDLIGETVRIFREHPPV 251
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH----NRITIVGDDDQSIFSFNGADISG 524
+ Y+ ++ +++DE+QDT+ QY+L+ L + + +VGD DQSI++F GA I
Sbjct: 252 TEYYRRRFRHVLIDEYQDTNHAQYALIHELVGSGPDASELCVVGDSDQSIYAFRGATIRN 311
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+ F +D+ N + I L +NYRST+ I+ AA+S+I N R + K + T G I+
Sbjct: 312 IEEFERDYPNAETILLEQNYRSTQTILNAANSVIAQNENRRE-KKLWTALGSGDPIVGYV 370
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
NE + FI +++ A G +Y IA++YR S + + F IP+ +
Sbjct: 371 ADNEHDEARFIANEVDALADKG----VAYSDIAVMYRTNNSSRAVEDVFMRTGIPYKVVG 426
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFK-----------AFLLLEKEEKKRVID 692
G FY +K +R IIA LR D RR+ AFL L
Sbjct: 427 GTRFYERKEIRDIIAYLRLIDNPDDAVSLRRIINTPRRGIGDKAVAFLSL---------- 476
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRRE------ 746
H D F A D K+S R GR + + K +R E
Sbjct: 477 HADN----HNVGFHKALLDATEDKVSMLGAR-----GRNAVTGFVDMMKGIREEAANKVN 527
Query: 747 -----PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFL 801
P I +++ + ++ K LE+ D G L+ N+L SV + ++ + +
Sbjct: 528 EVTGMPDIGDMVSYILDVTGYKAELEKSN--DPQDGARLDNLNELVSVAREFSSEAANQV 585
Query: 802 STKFTAAKEEG-NVDQDKKG--CINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIH 857
+ + AK + + + +G L AF++ +S Q DNE VTL T+H
Sbjct: 586 AYERMGAKNQAPEIPELSEGEAAPGSLMAFLERVSLVADAD---QIPDNEQGVVTLMTLH 642
Query: 858 QSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV 917
+KGLE+ +VF+ + + P + A+ E + EERRL YV +TRAR+ L++
Sbjct: 643 TAKGLEFPVVFLTGWEDGQFPHLR----ALGEP-KELAEERRLAYVGITRARRTLYLSRA 697
Query: 918 MMDANWQ---LLQPSRFLKEIPHHLREVQAEQ 946
M+ ++W PSRFL EIP L + + E+
Sbjct: 698 MLRSSWGNPVTNPPSRFLSEIPDELMDWRREE 729
>gi|163815569|ref|ZP_02206942.1| hypothetical protein COPEUT_01743 [Coprococcus eutactus ATCC 27759]
gi|158449206|gb|EDP26201.1| putative ATP-dependent DNA helicase PcrA [Coprococcus eutactus ATCC
27759]
Length = 789
Score = 249 bits (636), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 215/731 (29%), Positives = 340/731 (46%), Gaps = 119/731 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LND Q + AC + PLLI+AG GSGK G++P NILA+TFT
Sbjct: 17 MAGLNDMQ-QQACEHVDGPLLILAGAGSGKTRVITHRVAYLMDHEGVNPLNILAITFTNK 75
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMRDR+ IVG+ A + +STFHS +++ R +A+K+ F IY Q+ +
Sbjct: 76 AAREMRDRVDLIVGEG-ADRVWVSTFHSLCVRILRRYADKIGYEKNFDIYDSDDQKSTVK 134
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++ + + KR M ++
Sbjct: 135 SILKDFQIDP----KRYPEKMFMSE----------------------------------- 155
Query: 410 GMDVAKASGKTPAEF--RKIGDEIGAAILE---NYNGILRSCNALDYHDLISCSVKLLST 464
+ AK +P EF R D + E Y G L+ NA+D+ DLI +V+L
Sbjct: 156 -ISKAKEKYMSPDEFARRNAADYAATKVAEVYTEYQGRLKKNNAMDFDDLIYKTVELFEH 214
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADIS 523
P+V YQ+ ++ I+VDE+QDT+ +Q+ ++++LA R + +VGDDDQSI+ F GA+I+
Sbjct: 215 NPDVLDTYQNRFRYIMVDEYQDTNHIQFLMVKMLARKYRNLCVVGDDDQSIYKFRGANIT 274
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
+F K++ + K I+L +NYRS I+ AA+++IQHN R + K + TD G KI
Sbjct: 275 NILNFEKEYEDAKVIKLEQNYRSCGNILAAANAVIQHNEGR-KDKALWTDQDAGEKISFD 333
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH 643
+C E A+ + +I G Y IAILYR +V IP+ ++
Sbjct: 334 QCDTEYAEGDLVASRIKTLVRQG----VGYRDIAILYRTNAQSRVLGEKMVYANIPYRVY 389
Query: 644 -GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRK 702
G FY +K ++ ++A L+ D+ +RRV KR I
Sbjct: 390 GGTNFYARKEIKDVLAYLKVINNTTDNLYFRRVVNV--------PKRGIGEA-------S 434
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + + D +G + R+ G M K + + +I S +M+
Sbjct: 435 LSKVESFADAYGLSMMDAAARADEIPG--------MAVKTSGKIKQFATLIQSFRDMLQD 486
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN-----VDQD 817
L+ AV D ++L ED S L+A+ T+ T+ E N VD++
Sbjct: 487 GESLD--AVYD----RIL-EDTGYESE---LIAEHTEESMTRLENIDELRNKVVEFVDEN 536
Query: 818 KKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
++ ++ I +S+ ++ +++N V L T+H +KGLE+ VF+ +
Sbjct: 537 EEAGLSEFLEEIALVSDLDS------MSEDDNQVKLMTLHSAKGLEFPYVFICGMEDRVF 590
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKE 934
P N ++ ++EEERRL YV +TRA KKL++ MM N SRF++E
Sbjct: 591 PSGMALN---SDDPDALEEERRLCYVGITRAMKKLYLSAARERMMHGNRISSDVSRFIRE 647
Query: 935 IPHHLREVQAE 945
IP L E +A+
Sbjct: 648 IPPLLFEHEAD 658
>gi|225574543|ref|ZP_03783153.1| hypothetical protein RUMHYD_02620 [Blautia hydrogenotrophica DSM
10507]
gi|225038230|gb|EEG48476.1| ATP-dependent DNA helicase PcrA [Blautia hydrogenotrophica DSM
10507]
Length = 737
Score = 249 bits (636), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 208/726 (28%), Positives = 349/726 (48%), Gaps = 124/726 (17%)
Query: 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAA 290
++LN QQ EA C PLLI+AG GSGK G++P NI+A+TFT A
Sbjct: 5 ENLNPQQKEAVC-QTEGPLLILAGAGSGKTRVLTHRIAYLIEEKGVNPWNIMAITFTNKA 63
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIE 350
A EM++R+ IVG + + + ++TFHS +++ R + +++ + F IY Q+ + +
Sbjct: 64 AQEMKERVDQIVGFGS-ESVWVTTFHSTCVRILRRYIDRIGFDNRFTIYDADDQKSLMKD 122
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLF-FSMSSFKLCQYNKFERD 409
+ KR+ D L+ A+L S + +L +FE +
Sbjct: 123 -----------ICKRLQID------------TKLYKERALLAQISHAKDQLVSPEEFELN 159
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ ++ K+ A + + Y LR NALD+ DLI +V+L + PEV
Sbjct: 160 ----------SQGDYSKMR---VAEVYKEYQTQLRRNNALDFDDLIMKTVELFQSCPEVL 206
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ+ ++ I+VDE+QDT+ Q+ + +LAS + + +VGDDDQSI+ F GA+I F
Sbjct: 207 ESYQERFRYIMVDEYQDTNLAQFQFVSLLASKYQNLCVVGDDDQSIYKFRGANIENILGF 266
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
+ F N K IRL +NYRST+ I++AA+ +IQ+N +R + K + TDN G+K+ + +
Sbjct: 267 ERVFSNTKVIRLEQNYRSTKNILQAANEVIQNNAQR-KPKTLWTDNEEGNKVHFRHFLSG 325
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ +++ I + G ICSY A+LYR ++F+ F IP+ + GV F
Sbjct: 326 FEEAEYVVGDIAQKHREG---ICSYRDCAVLYRTNAQSRLFEEKFLMANIPYRLVGGVNF 382
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y +K ++ +++ L+T DD RR+ + ++ + + + +T + SF
Sbjct: 383 YARKEIKDLLSYLKTVDNAKDDLAVRRIIN---IPKRGIGATTLLRVQEYATEQDISFYD 439
Query: 708 AACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLE 767
A L E I KL R I +T + ++ E
Sbjct: 440 A------------------------LKEAEKIPKLGRAAVKIQPFVTMIQSLRS-----E 470
Query: 768 QRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQ--------DKK 819
QR+ F +LL++ + +Q L+A+ TD + N+D+ DK+
Sbjct: 471 QRS---FSVSELLDDVIERTGYVQDLIAEDTDESRARIE------NIDELITKATTYDKE 521
Query: 820 GCINVLKAFID---YISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
L F++ +++ +T N++ V L T+H +KGLE+ V++A +
Sbjct: 522 SENPTLGGFLEEVALVADIDT------VDPNQDHVLLMTLHSAKGLEFSQVYLAGMEDGI 575
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLK 933
P + +E +EEERRL YV +TRA K L + V M+ Q + SRF+
Sbjct: 576 FP---SYMTIGSEDPGDMEEERRLCYVGITRAMKDLTMTSVQQRMIRGQAQYNKVSRFIY 632
Query: 934 EIPHHL 939
E+P +
Sbjct: 633 ELPREV 638
>gi|295109226|emb|CBL23179.1| ATP-dependent DNA helicase PcrA [Ruminococcus obeum A2-162]
Length = 744
Score = 249 bits (636), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 212/761 (27%), Positives = 345/761 (45%), Gaps = 129/761 (16%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAA 291
+LND+Q EA PLLI+AG GSGK GI+P NILA+TFT AA
Sbjct: 6 TLNDRQKEAVFY-TEGPLLILAGAGSGKTRVLTHRIAYLIAEKGINPWNILAITFTNKAA 64
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEA 351
EMR+R+ I G + +STFHS +++ R H ++L + F IY Q+ + E
Sbjct: 65 HEMRERVDRIAGNVGGGSVWVSTFHSTCVRILRRHIDRLGYDNNFTIYDADDQKTLMKEI 124
Query: 352 VRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
R + + K++ L L Q + + + +
Sbjct: 125 CRKMN----IDTKKVKERAL----------------------------LAQISHAKDELL 152
Query: 412 DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQE 471
+ + A+F + + A + Y LR NALD+ DLI +V+L +V Q
Sbjct: 153 NPDEMEMNAGADFNQ---KRAAQVYREYQAALRRNNALDFDDLIVKTVELFQNCDDVLQT 209
Query: 472 YQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRK 530
YQ+ ++ I+VDE+QDT+ Q+ + +LAS + + +VGDDDQSI+ F GA+I F +
Sbjct: 210 YQERFRYIMVDEYQDTNTAQFKFVSLLASRYENLCVVGDDDQSIYKFRGANIGNILGFER 269
Query: 531 DFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDA 590
F N K IRL +NYRST+ I++AA+ +I +N +R + K + T+N G KI ++ N
Sbjct: 270 VFPNAKVIRLEQNYRSTQNILDAANGVIANNTERKE-KTLWTENPEGEKIHFRQFMNGYE 328
Query: 591 QCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVAFYR 649
+ +++ I + G A Y A+LYR ++F+ IP+ I GV FY
Sbjct: 329 EAEYVVGDIAKRHREGAA---DYHDCAVLYRTNAQSRLFEEKCLLANIPYKIVGGVNFYA 385
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAA 709
+K ++ ++ L+T DD RR+ + ++ + + + + SF A
Sbjct: 386 RKEIKDLLCYLKTVDNAADDLAVRRILN---VPKRGIGATTVGRVQDYADMMNISFYDAL 442
Query: 710 CDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQR 769
++ PSI ++ + V L+ +
Sbjct: 443 -------------------------------RVAEEVPSIGRSLSKIEGFVTFIQSLKSK 471
Query: 770 AVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKF---------TAAKEEGNVDQDKKG 820
A + +LL E DL + L A+ TD + T + EE D++++
Sbjct: 472 AQA-YSVSELLEEIIDLTGYVDELKAEDTDEARARIENIDELISKTVSYEEAMKDEEREA 530
Query: 821 CIN------VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
++ L A ID + E N++ V L T+H +KGLE+ V++A +
Sbjct: 531 TLSGFLEEIALIADIDSVDE------------NQDYVILMTLHSAKGLEFPYVYLAGMED 578
Query: 875 TEIP-LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSR 930
P + F+G + +EEERRL YV +TRA K+L + M+ Q + SR
Sbjct: 579 GMFPGSMSIFSG----DPSDMEEERRLCYVGITRAMKELTLTSAQQRMVRGETQYNRVSR 634
Query: 931 FLKEIPHHLREVQAEQSVQDQHENIPEGTAQFTINLPREEN 971
F++EIP L V+ +VQ+ +PE + L ++N
Sbjct: 635 FVREIPREL--VELGHTVQEHKPKMPETKSSLNSYLQMKKN 673
>gi|27468508|ref|NP_765145.1| ATP-depentend DNA helicase [Staphylococcus epidermidis ATCC 12228]
gi|293367781|ref|ZP_06614430.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417646421|ref|ZP_12296277.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU144]
gi|417659910|ref|ZP_12309504.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU045]
gi|417908243|ref|ZP_12552002.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU037]
gi|418413107|ref|ZP_12986351.1| ATP-dependent DNA helicase pcrA [Staphylococcus epidermidis
BVS058A4]
gi|418605854|ref|ZP_13169157.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU041]
gi|418607279|ref|ZP_13170523.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU057]
gi|418613415|ref|ZP_13176425.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU117]
gi|418617484|ref|ZP_13180379.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU120]
gi|418627130|ref|ZP_13189713.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU126]
gi|420186115|ref|ZP_14692189.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM040]
gi|420195665|ref|ZP_14701454.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM021]
gi|420198191|ref|ZP_14703907.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM020]
gi|420208109|ref|ZP_14713589.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM008]
gi|420215040|ref|ZP_14720313.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIH05005]
gi|420215910|ref|ZP_14721136.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIH05001]
gi|420221212|ref|ZP_14726164.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIH04008]
gi|420223542|ref|ZP_14728438.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIH08001]
gi|420226084|ref|ZP_14730907.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIH06004]
gi|420228496|ref|ZP_14733247.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIH05003]
gi|420230853|ref|ZP_14735531.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIH04003]
gi|420233302|ref|ZP_14737918.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIH051668]
gi|38604841|sp|Q8CRT9.1|PCRA_STAES RecName: Full=ATP-dependent DNA helicase PcrA
gi|27316055|gb|AAO05189.1|AE016749_135 ATP-depentend DNA helicase [Staphylococcus epidermidis ATCC 12228]
gi|291318120|gb|EFE58517.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329726871|gb|EGG63329.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU144]
gi|329734740|gb|EGG71046.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU045]
gi|341656464|gb|EGS80181.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU037]
gi|374401087|gb|EHQ72175.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU041]
gi|374405484|gb|EHQ76417.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU057]
gi|374815697|gb|EHR79920.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU117]
gi|374818389|gb|EHR82551.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU120]
gi|374830261|gb|EHR94039.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU126]
gi|394252819|gb|EJD97842.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM040]
gi|394263041|gb|EJE07787.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM021]
gi|394264710|gb|EJE09382.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM020]
gi|394274730|gb|EJE19140.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM008]
gi|394282670|gb|EJE26857.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIH05005]
gi|394285031|gb|EJE29120.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIH04008]
gi|394287266|gb|EJE31230.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIH08001]
gi|394292800|gb|EJE36537.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIH06004]
gi|394293021|gb|EJE36751.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIH05001]
gi|394294759|gb|EJE38424.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIH05003]
gi|394295987|gb|EJE39620.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIH04003]
gi|394300359|gb|EJE43865.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIH051668]
gi|410879396|gb|EKS27243.1| ATP-dependent DNA helicase pcrA [Staphylococcus epidermidis
BVS058A4]
Length = 729
Score = 249 bits (636), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 217/734 (29%), Positives = 349/734 (47%), Gaps = 119/734 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++++N +Q EA PLLI+AG GSGK +SP NILA+TFT
Sbjct: 5 VKNMNSEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ ++I
Sbjct: 64 AAKEMKARVEHLVGEE-AQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQK-SVI 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ V EN + KR M G ++ L
Sbjct: 122 KDVLKSEN---IDSKRFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP + +K + ++ A + + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PE + YQ+ ++ I VDE+QDT+ QY+L+++LA+ + +VGD DQSI+ + GADI
Sbjct: 203 PETLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ K I L +NYRST+ I+ AA+ +I+HN +R + K + T NS G KI E
Sbjct: 263 ILSFEEDYPEAKTIFLEQNYRSTKNILNAANEVIKHNSER-KPKGLWTANSGGDKIQYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++H +G Y +AILYR +V + F + IP+ +
Sbjct: 322 AMTERDEAEYVVKEIMKHQRSGK----KYSEMAILYRTNAQSRVLEETFMKSNIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR I ++KI T
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINV--------PKRGIGPSSVEKIQTYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + G K+ +TQ + + EMI L++ + + I+ + + V
Sbjct: 430 LQNNISMFDALAEVDFIGLSKK--VTQ--ECISFYEMIQNLIKEQEFLE--ISEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
QK G + +L+ + + S + L ++ +F+S E N +++
Sbjct: 484 QK-----------SGYRDMLDREQSIES--RSRLENLDEFMS---VPKDYEENTPLEEQS 527
Query: 821 CINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
IN L + + I E +T +N VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 528 LINFLTDLSLVADIDEADT----------QNGVTLMTMHSAKGLEFPIVFIMGMEESLFP 577
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
+ +E +EEERR+ YVA+TRA + L+I M+ Q PSRFLKEI
Sbjct: 578 HIRAIK---SEDDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKEI 634
Query: 936 PHHLREVQAEQSVQ 949
P L + Q Q
Sbjct: 635 PEDLLDSHTGQKRQ 648
>gi|57867385|ref|YP_189012.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis RP62A]
gi|417657290|ref|ZP_12306956.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU028]
gi|418610360|ref|ZP_13173475.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU065]
gi|418622429|ref|ZP_13185180.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU123]
gi|418625458|ref|ZP_13188109.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU125]
gi|418664173|ref|ZP_13225667.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU081]
gi|419768913|ref|ZP_14295016.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus IS-250]
gi|420164211|ref|ZP_14670943.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM095]
gi|420169048|ref|ZP_14675653.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM087]
gi|420186803|ref|ZP_14692828.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM039]
gi|420202533|ref|ZP_14708124.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM018]
gi|420212304|ref|ZP_14717656.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM001]
gi|420235888|ref|ZP_14740420.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIH051475]
gi|81673999|sp|Q5HN29.1|PCRA_STAEQ RecName: Full=ATP-dependent DNA helicase PcrA
gi|57638043|gb|AAW54831.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis RP62A]
gi|329734814|gb|EGG71119.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU028]
gi|374404686|gb|EHQ75655.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU065]
gi|374410814|gb|EHQ81546.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU081]
gi|374825278|gb|EHR89222.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU125]
gi|374826819|gb|EHR90699.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU123]
gi|383358817|gb|EID36263.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus IS-250]
gi|394232221|gb|EJD77839.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM095]
gi|394232350|gb|EJD77967.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM087]
gi|394257446|gb|EJE02366.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM039]
gi|394269283|gb|EJE13818.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM018]
gi|394279935|gb|EJE24229.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM001]
gi|394301872|gb|EJE45325.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIH051475]
Length = 729
Score = 249 bits (636), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 217/734 (29%), Positives = 349/734 (47%), Gaps = 119/734 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++++N +Q EA PLLI+AG GSGK +SP NILA+TFT
Sbjct: 5 VKNMNSEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ ++I
Sbjct: 64 AAKEMKARVEHLVGEE-AQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQK-SVI 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ V EN + KR M G ++ L
Sbjct: 122 KDVLKSEN---IDSKRFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP + +K + ++ A + + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PE + YQ+ ++ I VDE+QDT+ QY+L+++LA+ + +VGD DQSI+ + GADI
Sbjct: 203 PETLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ K I L +NYRST+ I+ AA+ +I+HN +R + K + T NS G KI E
Sbjct: 263 ILSFEEDYPEAKTIFLEQNYRSTKNILNAANEVIKHNSER-KPKGLWTANSGGDKIQYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++H +G Y +AILYR +V + F + IP+ +
Sbjct: 322 AMTERDEAEYVVKEIMKHQRSGK----KYSEMAILYRTNAQSRVLEETFMKSNIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR I ++KI T
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINV--------PKRGIGPSSVEKIQTYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + G K+ +TQ + + EMI L++ + + I+ + + V
Sbjct: 430 LQNNISMFDALAEVDFIGLSKK--VTQ--ECISFYEMIQNLIKEQEFLE--ISEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
QK G + +L+ + + S + L ++ +F+S E N +++
Sbjct: 484 QK-----------SGYRDMLDREQSIES--RSRLENLDEFMS---VPKDYEENTPLEEQS 527
Query: 821 CINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
IN L + + I E +T +N VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 528 LINFLTDLSLVADIDEADT----------QNGVTLMTMHSAKGLEFPIVFIMGMEESLFP 577
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
+ +E +EEERR+ YVA+TRA + L+I M+ Q PSRFLKEI
Sbjct: 578 HIRAIK---SEDDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKEI 634
Query: 936 PHHLREVQAEQSVQ 949
P L + Q Q
Sbjct: 635 PEDLLDSHTGQKRQ 648
>gi|420173318|ref|ZP_14679812.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM067]
gi|394240249|gb|EJD85676.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM067]
Length = 729
Score = 249 bits (636), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 217/734 (29%), Positives = 349/734 (47%), Gaps = 119/734 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++++N +Q EA PLLI+AG GSGK +SP NILA+TFT
Sbjct: 5 VKNMNSEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ ++I
Sbjct: 64 AAKEMKARVEHLVGEE-AQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQK-SVI 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ V EN + KR M G ++ L
Sbjct: 122 KDVLKSEN---IDSKRFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP + +K + ++ A + + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PE + YQ+ ++ I VDE+QDT+ QY+L+++LA+ + +VGD DQSI+ + GADI
Sbjct: 203 PETLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ K I L +NYRST+ I+ AA+ +I+HN +R + K + T NS G KI E
Sbjct: 263 ILSFEEDYPEAKTIFLEQNYRSTKNILNAANEVIKHNSER-KPKGLWTANSGGDKIQYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++H +G Y +AILYR +V + F + IP+ +
Sbjct: 322 AMTERDEAEYVVKEIMKHQRSGK----KYSEMAILYRTNAQSRVLEETFMKSNIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR I ++KI T
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINV--------PKRGIGPSSVEKIQTYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + G K+ +TQ + + EMI L++ + + I+ + + V
Sbjct: 430 LQNNISMFDALAEVDFIGLSKK--VTQ--ECISFYEMIQNLIKEQEFLE--ISEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
QK G + +L+ + + S + L ++ +F+S E N +++
Sbjct: 484 QK-----------SGYRDMLDREQSIES--RSRLENLDEFMS---VPKDYEENTPLEEQS 527
Query: 821 CINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
IN L + + I E +T +N VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 528 LINFLTDLSLVADIDEADT----------QNGVTLMTMHSAKGLEFPIVFIMGMEESLFP 577
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
+ +E +EEERR+ YVA+TRA + L+I M+ Q PSRFLKEI
Sbjct: 578 HIRAIK---SEDDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKEI 634
Query: 936 PHHLREVQAEQSVQ 949
P L + Q Q
Sbjct: 635 PEDLLDSHTGQKRQ 648
>gi|409357948|ref|ZP_11236316.1| UvrD/REP helicase [Dietzia alimentaria 72]
Length = 830
Score = 249 bits (636), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 226/764 (29%), Positives = 341/764 (44%), Gaps = 120/764 (15%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTF 286
S L LN QQ AA PLLIVAG GSGK G P ILA+TF
Sbjct: 16 SPLLDGLNPQQ-AAAVTHRGGPLLIVAGAGSGKTSVLTRRIAYLLAEGGAHPGQILAITF 74
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKL-ERTSEFLIYGHGQQR 345
T AA+EMR+R+ S+VG A+ + ++TFHS +++ R+ + L R S F IY R
Sbjct: 75 TNKAAAEMRERVASLVGP-HAERMWVATFHSICVRILRAQSALLGTRNSNFTIYDSDDSR 133
Query: 346 RAIIEAVRLLENEKILVVKRISTDMLTT--DGHFGYMRASLFMMNAMLFFSMSSFKLCQY 403
R + ++ E+ L VK+ + ML T H +R M+ L S
Sbjct: 134 RLL----GMIAKEQQLEVKKFTPRMLATAISNHKNELREPSEAMDRALEDS--------- 180
Query: 404 NKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
+R G VA ++ Y L++ NA D+ DLI +V LL
Sbjct: 181 ---DRTGQTVA-------------------SVFTEYQARLQAANAFDFDDLIGETVGLLR 218
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH--------------NRITIVGD 509
P+V Y+ ++ ++VDE+QDT+ QY L++ L + +VGD
Sbjct: 219 AHPQVAAYYRRRFRHVMVDEYQDTNHAQYVLVRTLVGGVAGEGDDDEVGVPPAELCVVGD 278
Query: 510 DDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKN 569
DQSI++F GA I + F D+ + + I L +NYRST+ I+ AA+++I N R + KN
Sbjct: 279 ADQSIYAFRGATIRNIEDFEHDYPDARSILLEQNYRSTQTILSAANAVISRNSGRRE-KN 337
Query: 570 VQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVF 629
+ T G ++ NE + FI +I +G A SY +A+ YR S +V
Sbjct: 338 LWTAEGTGDLLVGYVADNEHDEARFIAGEIDRLVDSGDA---SYSDVAVFYRTNNSSRVV 394
Query: 630 QTAFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDG-PYRRVFKAFLLLEKEEK 687
+ F +P+ + G FY +K VR I+A L+ L DD RR+ +
Sbjct: 395 EDVFVRLGLPYKVVGGTRFYERKEVRDIVAYLK-VLSNPDDAVAIRRILNT-------PR 446
Query: 688 KRVIDHIDKISTI----RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLV 743
+ + D + + R F A D K+S RS V L E+ ++L
Sbjct: 447 RGIGDRAEACVVVHAEQRGIGFAEALRDAAEGKVSLLPTRSVKAIAGFVALLDELRARLN 506
Query: 744 RRE--------PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLA 795
E P + +++ +V + Y E A D L+ N+L V + +
Sbjct: 507 GSEHAGGEDSAPDVGSLVEAVLDRT--GYRAELEASNDPQDAARLDNLNELVGVGREFSS 564
Query: 796 DVTDFLSTKFTAAKEEGNVDQDKKGCIN-------VLKAFIDYISERETEHFRTQRHDNE 848
+ LS + E +VD D ++ L AF++ +S Q D E
Sbjct: 565 EAALQLSAREQGFGPEADVDSDVNAELDEGLAEPGSLAAFLERVSLVADAD---QIPDEE 621
Query: 849 NS-VTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTR 907
VTL T+H +KGLE+ +VF+ + P + + EERRL YV +TR
Sbjct: 622 QGQVTLMTLHTAKGLEFPVVFLIGMEDGLFPHMRALGDPAE-----LSEERRLAYVGITR 676
Query: 908 ARKKLFILYVMMDANWQLLQP-----SRFLKEIPHHLREVQAEQ 946
AR++L++ MM ++W QP SRFL+EIP E Q E+
Sbjct: 677 ARRRLYLSRAMMRSSWG--QPMTNPGSRFLEEIPSEAIEWQREE 718
>gi|418630242|ref|ZP_13192726.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU127]
gi|374831473|gb|EHR95212.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU127]
Length = 729
Score = 249 bits (635), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 218/737 (29%), Positives = 348/737 (47%), Gaps = 125/737 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++++N +Q EA PLLI+AG GSGK +SP NILA+TFT
Sbjct: 5 VKNMNSEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ ++I
Sbjct: 64 AAKEMKARVEHLVGEE-AQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQK-SVI 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ V EN + KR M G ++ L
Sbjct: 122 KDVLKSEN---IDSKRFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP + +K + ++ A + + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PE + YQ+ ++ I VDE+QDT+ QY+L+++LA+ + +VGD DQSI+ + GADI
Sbjct: 203 PETLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ K I L +NYRST+ I+ AA+ +I+HN +R + K + T NS G KI E
Sbjct: 263 ILSFEEDYPEAKTIFLEQNYRSTKNILNAANEVIKHNSER-KPKGLWTANSGGDKIQYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++H +G Y +AILYR +V + F + IP+ +
Sbjct: 322 AMTERDEAEYVVKEIMKHQRSGK----KYSEMAILYRTNAQSRVLEETFMKSNIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR I ++KI T
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINV--------PKRGIGPSSVEKIQTYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + G K+ +TQ + + EMI L++ + + I+ + + V
Sbjct: 430 LQNNISMFDALAEVDFIGLSKK--VTQ--ECISFYEMIQNLIKEQEFLE--ISEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
QK G + +L+ + + S + L ++ +F+S E N +++
Sbjct: 484 QK-----------SGYRDMLDREQSIES--RSRLENLDEFMS---VPKDYEENTPLEEQS 527
Query: 821 CINVLK-----AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANET 875
IN L A ID + D +N VTL T+H +KGLE+ IVF+ E+
Sbjct: 528 LINFLTDLSLVADIDEV-------------DTQNGVTLMTMHSAKGLEFPIVFIMGMEES 574
Query: 876 EIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFL 932
P + +E +EEERR+ YVA+TRA + L+I M+ Q PSRFL
Sbjct: 575 LFPHIRAIK---SEDDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFL 631
Query: 933 KEIPHHLREVQAEQSVQ 949
KEIP L + Q Q
Sbjct: 632 KEIPEDLLDSHTGQKRQ 648
>gi|418326298|ref|ZP_12937485.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU071]
gi|365225963|gb|EHM67198.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU071]
Length = 729
Score = 249 bits (635), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 217/735 (29%), Positives = 348/735 (47%), Gaps = 121/735 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++++N +Q EA PLLI+AG GSGK +SP NILA+TFT
Sbjct: 5 VKNMNSEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ ++I
Sbjct: 64 AAKEMNARVEHLVGEE-AQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQK-SVI 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ V EN + KR M G ++ L
Sbjct: 122 KDVLKSEN---IDSKRFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP + +K + ++ A + + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PE + YQ+ ++ I VDE+QDT+ QY+L+++LA+ + +VGD DQSI+ + GADI
Sbjct: 203 PETLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ + K I L +NYRST+ I+ AA+ +I+HN +R + K + T NS G KI E
Sbjct: 263 ILSFEEDYPDAKTIFLEQNYRSTKNILNAANEVIKHNSER-KPKGLWTANSGGDKIQYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++H +G Y +AILYR +V + F + IP+ +
Sbjct: 322 AMTERDEAEYVVKEIMKHQRSGK----KYSEMAILYRTNAQSRVLEETFMKSNIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR I ++KI T
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINV--------PKRGIGPSSVEKIQTYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREP--SISAVITSVANM 759
+ IS + G K+ +TQ + + EMI L++ + IS ++ V
Sbjct: 430 LQNNISMFDALAEVDFIGLSKK--VTQ--ECISFYEMIQNLIKEQEFLEISEIVDEV--- 482
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
L++ D +L+ + + S + L ++ +F+S E N +++
Sbjct: 483 ------LQKSGYRD-----MLDREQSIES--RSRLENLDEFMS---VPKDYEENTPLEEQ 526
Query: 820 GCINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
IN L + + I E +T +N VTL T+H +KGLE+ IVF+ E+
Sbjct: 527 SLINFLTDLSLVADIDEADT----------QNGVTLMTMHSAKGLEFPIVFIMGMEESLF 576
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKE 934
P + +E +EEERR+ YVA+TRA + L+I M+ Q PSRFLKE
Sbjct: 577 PHIRAIK---SEDDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKE 633
Query: 935 IPHHLREVQAEQSVQ 949
IP L + Q Q
Sbjct: 634 IPEDLLDSHTGQKRQ 648
>gi|320536129|ref|ZP_08036182.1| putative ATP-dependent DNA helicase PcrA [Treponema phagedenis
F0421]
gi|320147046|gb|EFW38609.1| putative ATP-dependent DNA helicase PcrA [Treponema phagedenis
F0421]
Length = 664
Score = 249 bits (635), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 208/726 (28%), Positives = 333/726 (45%), Gaps = 104/726 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
+ LN +Q A + P+LI+AG GSGK GI S ILA+TFT A
Sbjct: 4 VDKLNPEQ-RKAVSTIEGPVLIIAGAGSGKTRVITFRIAHMLDRGIPQSQILALTFTNKA 62
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIE 350
A EM +RI + GK + LT+STFH+F +++ R H L S F IY + + I E
Sbjct: 63 AREMEERIKELTGKKL-QNLTVSTFHAFGVKILREHIAALGWRSNFSIYDETDRNQLIKE 121
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
+ L+ + D Y +LF S+ K+ + K R
Sbjct: 122 LGKELK--------------FSQDSFDVYAVGALF----------SNIKMGR--KSWRGE 155
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
D + + + Y L+ NA+D+ DLI ++L + PE+
Sbjct: 156 HDAYRL------------------LYQEYQDSLKIYNAVDFDDLIMLPIQLFTEHPEILA 197
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDSFRK 530
EY++ ++ I+VDEFQDTS QY+ ++++A +N + +VGDDDQSI+S+ GA+ F K
Sbjct: 198 EYKNRYRYIMVDEFQDTSIQQYNFMKLIAENN-VCVVGDDDQSIYSWRGANFENIRMFEK 256
Query: 531 DFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDA 590
DF EI+L +NYRST I+ AA+ +I HN R + K + + N G I I E
Sbjct: 257 DFPQLVEIKLEQNYRSTGTILAAANGVIAHNTNRKE-KALWSGNDSGKPIEIFIPETETV 315
Query: 591 QCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG-VAFYR 649
+ FI D IL + S +G +L R + + +F IP+ + G +F++
Sbjct: 316 EADFIADMILTEKARENRSFSDFG---VLIRANSLSRAIEESFLNANIPYKMSGGTSFFQ 372
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAA 709
+K ++ +I+ LR DD R+ + KR ++ I I+T +KCS +A
Sbjct: 373 RKEIKDVISYLRVVANPDDDINLLRIINT---PRRGIGKRTVEIISHIATEQKCSIRAAI 429
Query: 710 CDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQR 769
++ G+ K K L ++ + L+ R + +A V + L+E+
Sbjct: 430 NNLLANSEGGSIKD-------KGLADVQSFADLISRHRKLLLSGKGLAQKV--RKLVEEI 480
Query: 770 AVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFI 829
D+ L+ E +Y ++ + + N D +N+
Sbjct: 481 NYFDY----LIQEYQKNEKAARYKFLNIERLIQSIEEWEHNPDNFD------VNLY---- 526
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
DY++ +++ V + TIH +KGLE+ +VF+A E IP ++ E
Sbjct: 527 DYLNRITLLTRDDMNEEDKGEVQIMTIHAAKGLEFPVVFIAGTEEGIIPHAR----SMEE 582
Query: 890 KGTSVEEERRLLYVAMTRARKKLFILYVMMD---ANWQLLQPSRFLKEIP-----HHLRE 941
+EEERRL YVA+TRA++KL+I ++ PS FL+EIP +H +
Sbjct: 583 NDGDIEEERRLFYVAITRAQQKLYITSCRTRKKMGTFRECAPSPFLEEIPADLVHYHEPD 642
Query: 942 VQAEQS 947
QAE +
Sbjct: 643 AQAEAA 648
>gi|424663714|ref|ZP_18100751.1| hypothetical protein HMPREF1205_04100 [Bacteroides fragilis HMW
616]
gi|404577404|gb|EKA82142.1| hypothetical protein HMPREF1205_04100 [Bacteroides fragilis HMW
616]
Length = 786
Score = 249 bits (635), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 221/758 (29%), Positives = 352/758 (46%), Gaps = 120/758 (15%)
Query: 237 MPDEYSKYLQSLNDQQLEAAC-GDMSTPLLIVAGPGSGK--------------GISPSNI 281
MPD Y++ LN+ Q A GD P L++AG GSGK G +P NI
Sbjct: 1 MPD----YIEELNESQRAAVLYGD--GPSLVIAGAGSGKTRVLTYKIAYLLENGYNPWNI 54
Query: 282 LAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGH 341
LA+TFT AA EM++RI VG+ A+ L + TFHS ++ R+ A + TS+F IY
Sbjct: 55 LALTFTNKAAREMKERIARQVGEQRARYLWMGTFHSVFSRILRAEASHIGFTSQFTIYDS 114
Query: 342 GQQR---RAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSF 398
+ R+II+ + L +EK + + H + S + N +
Sbjct: 115 ADSKSLLRSIIKEMGL--DEKTYKPGSVQARISNAKNHL--VSPSGYATNKEAY------ 164
Query: 399 KLCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCS 458
A A+ K PA I D I Y R A+D+ DL+ +
Sbjct: 165 --------------EADAAVKMPA----IRD-----IYSRYWERCRQAGAMDFDDLLVYT 201
Query: 459 VKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSL-LQILASHNRITIVGDDDQSIFSF 517
L FPEV Y++ ++ ++VDE+QDT+ Q+S+ LQ+ + R+ +VGDD QSI+SF
Sbjct: 202 YILFRDFPEVLARYREQFRYVLVDEYQDTNYAQHSIVLQLTKENQRVCVVGDDAQSIYSF 261
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GADI F K + + K +L +NYRST+ IV AA+SLI+ N ++ K V ++ G
Sbjct: 262 RGADIDNILYFTKIYPDTKVFKLEQNYRSTQTIVRAANSLIEKNERQIP-KEVFSEKERG 320
Query: 578 SKIIIKECHNEDAQCAFIIDKIL----EHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
I + + +++ + + +KI EH Y AILYR +VF+ A
Sbjct: 321 EAIGVFQAYSDVEEGDIVTNKIAQLRREHD-------YGYSDFAILYRTNAQSRVFEEAL 373
Query: 634 RERKIPFNIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID 692
R+R +P+ I+ G++FY++K ++ IIA R + D+ ++R+ + +
Sbjct: 374 RKRSMPYKIYGGLSFYQRKEIKDIIAYFRLVVNPNDEEAFKRIIN---YPARGIGDTTVG 430
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV 752
I K +T S + CD ++ QG + L+ M + I
Sbjct: 431 KIIKAATDNNVSLWTVLCDPITYGLTINKNTHTKLQGFRELIEQFMTEVAEKNAYEIGTA 490
Query: 753 I---TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAK 809
I + + N V Q D L ++N ++ L+ + DF + + +
Sbjct: 491 IIRQSGIINDVCQ----------DNSPENLSRKEN-----IEELVNGMNDFCAMR----Q 531
Query: 810 EEGNVDQDKKGCINVLKAFIDYISERE--TEHFRTQRHDNENSVTLTTIHQSKGLEWDIV 867
EEGN NV + ID++SE T+ + D E VTL T+H +KGLE+ V
Sbjct: 532 EEGNT--------NV--SLIDFLSEVSLLTDQDSDKEGDGEK-VTLMTVHSAKGLEFRNV 580
Query: 868 FVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ 927
FV E P +G + ++EEERRL YVA+TRA + F+ + + ++
Sbjct: 581 FVVGLEENLFP-----SGMAGDSPRAMEEERRLFYVAITRAEEHCFLSFAKTRFRYGKME 635
Query: 928 ---PSRFLKEIPHHLREVQAEQSVQDQHENIPEGTAQF 962
PSRFL++I ++ E ++ ++ EG +F
Sbjct: 636 CGSPSRFLRDIDTRFLQLPQEAAL---GRSVDEGAGRF 670
>gi|379796259|ref|YP_005326258.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356873250|emb|CCE59589.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 730
Score = 249 bits (635), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 215/725 (29%), Positives = 343/725 (47%), Gaps = 117/725 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +N +Q EA PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I K+ M G ++ L
Sbjct: 123 D---VLKNENI-DSKKFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP + +K ++ A + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPEDAQKEATDYHSQMVATVYRGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
P+V + YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 203 PDVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ K I L +NYRST+ I+ AA+ +I++N +R + K + T N+ G KI E
Sbjct: 263 ILSFEEDYPEAKTIFLEQNYRSTKTILNAANEVIKNNSER-KPKGLWTANTSGEKIHYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++H NG Y +AILYR +V + F + IP+ +
Sbjct: 322 AMTERDEAEYVVREIMKHQRNGK----KYQEMAILYRTNAQSRVLEETFMKSNIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR + ++KI
Sbjct: 378 GQKFYDRKEIKDLLSYLRMIANSNDDISLQRIINV--------PKRGVGPSSVEKIQNYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + A G K+ +TQ + L E+I L++ + + I + + V
Sbjct: 430 VQNNISMFDALGEADFIGLSKK--VTQ--ECLNFYELIQNLIKEQEFLE--IHEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
QK + +L +N L S + L ++ +F+S E N +++
Sbjct: 484 QKSGYRE----------MLERENTLES--RSRLENIDEFMS---VPQDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E +T E+ VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEADT----------ESGVTLMTMHSAKGLEFPIVFIMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ +E ++EERR+ YVA+TRA + L+I + M+ Q PSRFLKEIP
Sbjct: 579 IRAIK---SEDDHEMQEERRICYVAITRAEEILYITHATSRMLFGRPQSNMPSRFLKEIP 635
Query: 937 HHLRE 941
L E
Sbjct: 636 ESLLE 640
>gi|302519556|ref|ZP_07271898.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. SPB78]
gi|302428451|gb|EFL00267.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. SPB78]
Length = 829
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 211/728 (28%), Positives = 329/728 (45%), Gaps = 108/728 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN +Q AA +PLLIVAG GSGK G+ P ILA+TFT
Sbjct: 71 LTGLNPEQA-AAVVHSGSPLLIVAGAGSGKTRVLTHRIAYLLGRRGVHPGAILAITFTNK 129
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A + +STFHS +++ R ++KL TS F IY +R +
Sbjct: 130 AAGEMKERVEQLVGP-RAGAMWVSTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMA 188
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R L+ L KR T +S+ K N+
Sbjct: 189 LVCRDLD----LDPKRFPPKSFTA--------------------KISNLK----NELIDA 220
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ +G+ F K + Y LR NALD+ D+I +V LL FP+V
Sbjct: 221 EAYADEVAGEAAGAFEKTLSQA----YTMYQARLREANALDFDDIIMTTVHLLQAFPDVA 276
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN---------------RITIVGDDDQSI 514
+ Y+ ++ ++VDE+QDT+ QY+L++ L + + +VGD DQSI
Sbjct: 277 EHYRRRFRHVLVDEYQDTNHAQYTLVKELVGPSDGGTGYDGGPAPEPAELCVVGDADQSI 336
Query: 515 FSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDN 574
++F GA I F +D+ N K I L +NYRST+ I+ AA+++I+ N R + KN+ T+
Sbjct: 337 YAFRGATIRNILQFEEDYPNAKTILLEQNYRSTQTILSAANAVIERNENR-RPKNLWTEA 395
Query: 575 SHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFR 634
+G KI E + F+ D+I G A G +A+ YR +VF+ F
Sbjct: 396 GNGPKITGYVADTEHDEAQFVADEIDRLTDAGDAKP---GDVAVFYRTNAQSRVFEEVFI 452
Query: 635 ERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH 693
+P+ + GV FY ++ VR ++A LR D P RR+ E + +ID
Sbjct: 453 RVGLPYKVVGGVRFYERREVRDVLAYLRVLANPEDSVPLRRILNVPKRGIGERSEAMIDA 512
Query: 694 IDKISTIRKCSFISAACDIFG--AKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISA 751
+ + I + + +G A+ + KR +E + +V +
Sbjct: 513 LSQRERITFPQALQRVDEAYGMAARSANAIKRFN--------TLMEELRTIVESGAGPAV 564
Query: 752 VITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEE 811
V+ +V YL E +A D +D LQ L + +F E+
Sbjct: 565 VLEAVLEQT--GYLAELQASTD-------PQDETRIENLQELASVALEF---------EQ 606
Query: 812 GNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAK 871
D++ G L F++ ++ D + +TL T+H +KGLE+ +VF++
Sbjct: 607 ERSDEEGTGT---LAEFLEKVALVADSDQIPDEEDGDGVITLMTLHTAKGLEFPVVFLSG 663
Query: 872 ANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQP 928
+ P + G V E +EEERRL YV +TRAR++L++ + + W Q P
Sbjct: 664 MEDGVFPHMRAL-GQVKE----LEEERRLAYVGITRARERLYLTRSTLRSAWGQPQYNPP 718
Query: 929 SRFLKEIP 936
SRFL+EIP
Sbjct: 719 SRFLEEIP 726
>gi|318058788|ref|ZP_07977511.1| ATP-dependent DNA helicase II [Streptomyces sp. SA3_actG]
gi|318075472|ref|ZP_07982804.1| ATP-dependent DNA helicase II [Streptomyces sp. SA3_actF]
Length = 829
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 211/728 (28%), Positives = 329/728 (45%), Gaps = 108/728 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN +Q AA +PLLIVAG GSGK G+ P ILA+TFT
Sbjct: 71 LTGLNPEQA-AAVVHSGSPLLIVAGAGSGKTRVLTHRIAYLLGRRGVHPGAILAITFTNK 129
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A + +STFHS +++ R ++KL TS F IY +R +
Sbjct: 130 AAGEMKERVEQLVGP-RAGAMWVSTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMA 188
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R L+ L KR T +S+ K N+
Sbjct: 189 LVCRDLD----LDPKRFPPKSFTA--------------------KISNLK----NELIDA 220
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ +G+ F K + Y LR NALD+ D+I +V LL FP+V
Sbjct: 221 EAYADEVAGEAAGAFEKTLSQA----YTMYQARLREANALDFDDIIMTTVHLLQAFPDVA 276
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN---------------RITIVGDDDQSI 514
+ Y+ ++ ++VDE+QDT+ QY+L++ L + + +VGD DQSI
Sbjct: 277 EHYRRRFRHVLVDEYQDTNHAQYTLVKELVGPSDGGTGYDGGPAPEPAELCVVGDADQSI 336
Query: 515 FSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDN 574
++F GA I F +D+ N K I L +NYRST+ I+ AA+++I+ N R + KN+ T+
Sbjct: 337 YAFRGATIRNILQFEEDYPNAKTILLEQNYRSTQTILSAANAVIERNENR-RPKNLWTEA 395
Query: 575 SHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFR 634
+G KI E + F+ D+I G A G +A+ YR +VF+ F
Sbjct: 396 GNGPKITGYVADTEHDEAQFVADEIDRLTDAGDAKP---GDVAVFYRTNAQSRVFEEVFI 452
Query: 635 ERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH 693
+P+ + GV FY ++ VR ++A LR D P RR+ E + +ID
Sbjct: 453 RVGLPYKVVGGVRFYERREVRDVLAYLRVLANPEDSVPLRRILNVPKRGIGERSEAMIDA 512
Query: 694 IDKISTIRKCSFISAACDIFG--AKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISA 751
+ + I + + +G A+ + KR +E + +V +
Sbjct: 513 LSQRERITFPQALQRVDEAYGMAARSANAIKRFN--------TLMEELRTIVESGAGPAV 564
Query: 752 VITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEE 811
V+ +V YL E +A D +D LQ L + +F E+
Sbjct: 565 VLEAVLEQT--GYLAELQASTD-------PQDETRIENLQELASVALEF---------EQ 606
Query: 812 GNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAK 871
D++ G L F++ ++ D + +TL T+H +KGLE+ +VF++
Sbjct: 607 ERSDEEGTGT---LAEFLEKVALVADSDQIPDEEDGDGVITLMTLHTAKGLEFPVVFLSG 663
Query: 872 ANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQP 928
+ P + G V E +EEERRL YV +TRAR++L++ + + W Q P
Sbjct: 664 MEDGVFPHMRAL-GQVKE----LEEERRLAYVGITRARERLYLTRSTLRSAWGQPQYNPP 718
Query: 929 SRFLKEIP 936
SRFL+EIP
Sbjct: 719 SRFLEEIP 726
>gi|227485018|ref|ZP_03915334.1| ATP-dependent DNA helicase PcrA [Anaerococcus lactolyticus ATCC
51172]
gi|227237015|gb|EEI87030.1| ATP-dependent DNA helicase PcrA [Anaerococcus lactolyticus ATCC
51172]
Length = 731
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 220/732 (30%), Positives = 334/732 (45%), Gaps = 134/732 (18%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LND+Q EA PLL++AG GSGK + P NI+A+TFT
Sbjct: 3 LDRLNDRQKEAVLH-KDGPLLVLAGAGSGKTSVLTSSIAYKIKEESVDPRNIIAITFTNK 61
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM++R+ S++ A L I TFHS ++ R + EK+ ++ F IY QR I
Sbjct: 62 AANEMKERVSSLLDMDVAY-LWIGTFHSICARILRMNIEKIGYSNNFTIYDTQDQRTLIR 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ ++ L GY +N L S+ S
Sbjct: 121 DIIKDL----------------------GYKDD----INPRLAQSIIS------------ 142
Query: 410 GMDVAKASGKTPAEFRKI------GDEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
AK +P +F K+ DEI A I + Y NALD+ DLI ++L
Sbjct: 143 ---NAKNKSISPEDFLKMNFYMQNADEI-AEIFKKYEKKKYEYNALDFDDLIEKVLELFV 198
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADI 522
E + YQ+ + I VDEFQDT+ QY L++ +A + + VGD DQSI+SF GADI
Sbjct: 199 KDSETLRYYQNKFDYIFVDEFQDTNNSQYELIRFIAGKKQNVVAVGDADQSIYSFRGADI 258
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
SF KDF N K I+L +NYRST I+E A+ LI +N++R + KN+ T+N G+ ++
Sbjct: 259 RNILSFEKDFKNTKIIKLEQNYRSTSKILETANVLIANNLERKE-KNLWTENGDGADVLY 317
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN- 641
KE E + F+ID I ++G +AILYR + F+ A + I +
Sbjct: 318 KETSIESDESKFVIDTIKNLLADGYKE----SDMAILYRTNAQSRPFEEALLKNLIAYKV 373
Query: 642 IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKI 697
+ G+ FY +K ++ +IA L + DD +R+ E K+ + ID I+KI
Sbjct: 374 VGGLKFYDRKEIKDLIAYLNILVNSKDDVSLKRII-------NEPKRGIGDKSIDQIEKI 426
Query: 698 STIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV----- 752
+ S + D I T + LT K LE I V + + +
Sbjct: 427 AISHGISMLDLITDD-NFSILMTDRLKNLTD--KFYKPLEEIFINVDKYKIVDLINEVLE 483
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
T + + L+E RA VD ++ +F+S+ A +E
Sbjct: 484 KTGYLRSLEKSLLVEDRARVD----------------------NINEFISS--AADYQEA 519
Query: 813 NVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKA 872
N + D + + L D + +N S++L T+HQ+KGLE+ +VF+
Sbjct: 520 NPEDDLRDYLENLSLLSDI----------DKTEENNESISLMTMHQAKGLEFPVVFIVGL 569
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPS 929
+E P + ++EEERRL YV +TRA +KLF+ M N+ +PS
Sbjct: 570 DEGLFPSKRSLDEG------NLEEERRLFYVGITRAEEKLFLTSAQMRRNYGKVTYYKPS 623
Query: 930 RFLKEIPHHLRE 941
RF+ EI +++
Sbjct: 624 RFIDEIKDLIKK 635
>gi|420166219|ref|ZP_14672906.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM088]
gi|394233864|gb|EJD79454.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM088]
Length = 708
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 217/734 (29%), Positives = 349/734 (47%), Gaps = 119/734 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++++N +Q EA PLLI+AG GSGK +SP NILA+TFT
Sbjct: 5 VKNMNSEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ ++I
Sbjct: 64 AAKEMKARVEHLVGEE-AQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQK-SVI 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ V EN + KR M G ++ L
Sbjct: 122 KDVLKSEN---IDSKRFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP + +K + ++ A + + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PE + YQ+ ++ I VDE+QDT+ QY+L+++LA+ + +VGD DQSI+ + GADI
Sbjct: 203 PETLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ K I L +NYRST+ I+ AA+ +I+HN +R + K + T NS G KI E
Sbjct: 263 ILSFEEDYPEAKTIFLEQNYRSTKNILNAANEVIKHNSER-KPKGLWTANSGGDKIQYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++H +G Y +AILYR +V + F + IP+ +
Sbjct: 322 AMTERDEAEYVVKEIMKHQRSGK----KYSEMAILYRTNAQSRVLEETFMKSNIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR I ++KI T
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINV--------PKRGIGPSSVEKIQTYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + G K+ +TQ + + EMI L++ + + I+ + + V
Sbjct: 430 LQNNISMFDALAEVDFIGLSKK--VTQ--ECISFYEMIQNLIKEQEFLE--ISEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
QK G + +L+ + + S + L ++ +F+S E N +++
Sbjct: 484 QK-----------SGYRDMLDREQSIES--RSRLENLDEFMS---VPKDYEENTPLEEQS 527
Query: 821 CINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
IN L + + I E +T +N VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 528 LINFLTDLSLVADIDEADT----------QNGVTLMTMHSAKGLEFPIVFIMGMEESLFP 577
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
+ +E +EEERR+ YVA+TRA + L+I M+ Q PSRFLKEI
Sbjct: 578 HIRAIK---SEDDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKEI 634
Query: 936 PHHLREVQAEQSVQ 949
P L + Q Q
Sbjct: 635 PEDLLDSHTGQKRQ 648
>gi|241890126|ref|ZP_04777424.1| ATP-dependent helicase PcrA [Gemella haemolysans ATCC 10379]
gi|241863748|gb|EER68132.1| ATP-dependent helicase PcrA [Gemella haemolysans ATCC 10379]
Length = 727
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 209/721 (28%), Positives = 355/721 (49%), Gaps = 116/721 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+Q++ND QL+A ++++AG GSGK I +NILA+TFT
Sbjct: 4 VQNMNDNQLKAIL-KTEGAVMVIAGAGSGKTRVLTNRIAYLISEKNILENNILAITFTNK 62
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++RI ++VG+ T+K + I+TFHS +++ R H E L F I +Q+ I
Sbjct: 63 AAKEMKERIYALVGE-TSKYIWINTFHSMCVRILRQHIELLGYNKNFTILDTSEQKSIIK 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
VR L+ L+ D Y A N + S + L
Sbjct: 122 NIVRSLD--------------LSEDA---YQPA-----NVLKIISNAKNSLVS------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
V K ++ F K EI A +Y L+ + LD+ DL+ ++ L FPEV
Sbjct: 153 ---VKKMREQSRFGFMKNVAEIYA----HYQSYLKKNSVLDFDDLMLKTIVLFKKFPEVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSF 528
YQ+ ++ I VDE+QDT+ +QY L+++L A H + +VGDDDQSI+S+ GA +F
Sbjct: 206 AIYQNQFQYIHVDEYQDTNVIQYRLIKMLSAVHKNVCVVGDDDQSIYSWRGACSDNIINF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KDF + + + L +NYRS I++AA+++I++N R + K + ++N G KI + N+
Sbjct: 266 EKDFDDVELVFLDQNYRSNSTILDAANAVIKNNTDRKE-KELWSENKGGGKISVYAASND 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG-VAF 647
+ I KILE G Y IAILYR + + + IP+ + G + F
Sbjct: 325 KDETDDIAKKILELKKEG----IDYKDIAILYRANYLSRQMENSCLSFGIPYKLIGSLKF 380
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
+++ VR ++A L + D+ RR+ + ++ +D IDK + S
Sbjct: 381 LQRQEVRDLLAYLNVIVNRADEFSLRRIIN---VPKRGVGASSMDKIDKYAEQYGISLFE 437
Query: 708 AACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLE 767
A +I +S +K++ +++++ L+ + + ++Y ++
Sbjct: 438 ALKNIEAIGVS-----------KKIVTNIKLLTNLIEKYSEV------------ERYAID 474
Query: 768 QRAVVDF-DGG--KLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINV 824
+ + + D G +L E ND + + + ++++ +S+ AK+ +++
Sbjct: 475 ELIIGIYKDSGYETMLKESNDPYA--ESRIENISELVSS----AKQFSSMND-------- 520
Query: 825 LKAFIDYISERETEHFRTQRHDNEN---SVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
+ ID+ISE T D+EN +V L+T+H SKGLE+ +VF+ E P +
Sbjct: 521 --SLIDFISEMSL----TSDSDDENQEDAVVLSTVHASKGLEYKVVFIMGLEENLFPSIR 574
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHH 938
+ + +EK +EEERRL YVA+TRA+++LF+ Y M + ++ + SRFL E+P+
Sbjct: 575 DAESSADEK-NKMEEERRLAYVAITRAKERLFMSYANRRMQFGSIKMNKRSRFLDEVPNK 633
Query: 939 L 939
L
Sbjct: 634 L 634
>gi|406671359|ref|ZP_11078598.1| ATP-dependent DNA helicase PcrA [Facklamia hominis CCUG 36813]
gi|405580609|gb|EKB54668.1| ATP-dependent DNA helicase PcrA [Facklamia hominis CCUG 36813]
Length = 765
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 219/731 (29%), Positives = 351/731 (48%), Gaps = 112/731 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
LQ LND+Q EA P+LI AG GSGK G+ P +ILA+TFT
Sbjct: 7 LQGLNDKQREAVLTTQG-PVLIAAGAGSGKTRVLTHRIAYLIEELGVKPWHILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM++R+ +VG+A+ + +STFH+ +++ R A L T+ F I +Q+
Sbjct: 66 AANEMKERLHQLVGEASTS-IWVSTFHALCVRILRQQAHLLGYTNNFSIVDQSEQK---- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KR+ ++ + + F ML+
Sbjct: 121 -----------TLMKRVLKEL--------NLSSQFFPEKEMLYL---------------- 145
Query: 410 GMDVAKASGKTPAEFR---KIGDEIGAA-ILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+D AK G TP + + K I A I Y L++ NA+D++DLI +V+L
Sbjct: 146 -IDQAKNQGLTPEQVKADAKYPQAIKQAEIYHCYQKNLKAANAMDFNDLILNTVQLFEEQ 204
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISG 524
P V Q YQ+ + I VDE+QDT+ QY L+Q+L + + I +VGD DQSI+ + GAD++
Sbjct: 205 PYVRQFYQNKFDYIHVDEYQDTNQTQYQLVQLLVNEAQNICVVGDADQSIYGWRGADMTN 264
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+F +DF K I L +NYRST I++AA+S+I++NV R + K + ++ G KI+ E
Sbjct: 265 ILNFEQDFPRAKSILLEQNYRSTPTILKAANSVIKNNVNR-KAKELWSNKEAGDKIVYYE 323
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
++ + F+I +IL + A+LYR Q + + F + IP+ +
Sbjct: 324 ADSDLEEAGFVIQEILTEKDLHRRQNSDF---AVLYRTQAQSRSLEDQFLKANIPYQVVG 380
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
GV FY +K ++ ++A LR DD + R+ E KR I S++ K
Sbjct: 381 GVRFYARKEIQDVLAYLRLVDNPKDDLSFNRIIN--------EPKRGIG----ASSVSKL 428
Query: 704 SFISAACDIFGAKISGTFKRSQLTQG--RKVLLTLEMISKLVRREP--SISAVITSVANM 759
+A+ ++ + + S L+ +K MI +L + S++ ++ V +
Sbjct: 429 QDFAASLNLSNFQAAQQVNASNLSASVKKKFQDFSVMIDRLHEQAKYLSMTELLEEVLEV 488
Query: 760 VP-QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQD- 817
++ LL+Q D + L ++L+SV Q D +D K+ G D D
Sbjct: 489 TGYRQALLDQN---DLESQARLENIDELKSVTQEF--DQSDL--------KDLGETDPDL 535
Query: 818 -KKGC---INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+ G ++ L F+ +S + +QR +E+ VTL T+H +KGLE+ +VFV
Sbjct: 536 VQAGSEEDLSGLTLFLGQVSLSTDQE--SQRDSDESVVTLMTLHAAKGLEFPVVFVVGME 593
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSR 930
E P F E +EEERRL YV MTRA +KL++ M+ Q + SR
Sbjct: 594 EGIFPSYRAF-----ENLDEMEEERRLAYVGMTRAEEKLYLSACRRRMLYGRLQQNKLSR 648
Query: 931 FLKEIPHHLRE 941
F+ E+ L E
Sbjct: 649 FVDEVDADLVE 659
>gi|363422785|ref|ZP_09310858.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus pyridinivorans AK37]
gi|359732502|gb|EHK81515.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus pyridinivorans AK37]
Length = 792
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 219/759 (28%), Positives = 352/759 (46%), Gaps = 107/759 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LN QQ EA + PLLIVAG GSGK G+ P +LA+TFT
Sbjct: 18 LEGLNPQQREAVTHE-GAPLLIVAGAGSGKTAVLTRRIAYLLAERGVVPGQVLAITFTNK 76
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLE-RTSEFLIYGHGQQRRAI 348
AA+EMR+R+ ++VG A + +STFHS +++ R+ A L+ S F IY RR +
Sbjct: 77 AAAEMRERVAALVGP-RANAMWVSTFHSSCVRILRAQAGLLQGMNSNFTIYDADDSRRLL 135
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
+ LE L K+ S +L+T +S+ K E
Sbjct: 136 TMIAKDLE----LDSKKYSARLLST--------------------QISNLK------NEL 165
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
G + A +T + ++ + A + +Y LR+ NA D+ DLI +V LL P+V
Sbjct: 166 IGPEEAAHEAETDSAATEL-TRVVARVYAHYQQRLRTANAFDFDDLIGETVALLQAHPQV 224
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH---------NRITIVGDDDQSIFSFNG 519
+ Y+ ++ ++VDE+QDT+ QY L++ L + + +VGD DQSI++F G
Sbjct: 225 AEYYRRRFRHVLVDEYQDTNHAQYVLVRTLVGDPEEESAVPPSELCVVGDADQSIYAFRG 284
Query: 520 ADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSK 579
A I + F +D+ + I L +NYRST+ I+ AA+S+I N R + K + TD+ G
Sbjct: 285 ATIRNIEEFERDYPQARTILLEQNYRSTQNILSAANSVISKNTGRRE-KRLWTDSGEGEL 343
Query: 580 IIIKECHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRER 636
I NE + F+ ID++++ +Y IA+ YR + + F+ F
Sbjct: 344 ITGYVADNEHDEARFVAAEIDRLVDGGD------TTYSDIAVFYRTNNASRAFEDVFIRH 397
Query: 637 KIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHID 695
+P+ + GV FY +K VR ++A L+ D RR+ ++ + D +
Sbjct: 398 GVPYKVVGGVRFYERKEVRDVVAYLKVLDNPDDTVSLRRILNT-------PRRGIGDRAE 450
Query: 696 KISTIRK----CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREP---- 747
+ SF A D K++ R+Q V + + + LV +
Sbjct: 451 ACVAVHAERLGVSFGQALADAADGKVALLNTRAQKAIAGFVEMMDGLRAMLVASDADGND 510
Query: 748 --SISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKF 805
I V+ ++ + Y E A D G L+ ++L SV + ADV +
Sbjct: 511 MVDIGDVVEAILDRT--GYSAELSASDDPQDGARLDNLHELVSVAREFSADVRNAAGI-V 567
Query: 806 TAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIHQSKGLEW 864
+EEG+ + L AF++ +S Q +NE VTL T+H +KGLE+
Sbjct: 568 DDEREEGDPEPGS------LAAFLEKVSLVADAD---QIPENEAGVVTLMTLHTAKGLEF 618
Query: 865 DIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQ 924
+VFV + + P + + EERRL YV +TRAR++L++ ++ ++W
Sbjct: 619 PVVFVTGWEDGQFPHMRALGDP-----AELSEERRLAYVGITRARRRLYLTRAVLRSSWG 673
Query: 925 --LLQP-SRFLKEIPHHLREVQAEQSVQDQHENIPEGTA 960
L P SRFL+EIP HL + + + + + I GT
Sbjct: 674 QPLTNPESRFLQEIPQHLIDWRRLEPTPARGQAIGSGTG 712
>gi|224476962|ref|YP_002634568.1| ATP-dependent DNA helicase [Staphylococcus carnosus subsp. carnosus
TM300]
gi|222421569|emb|CAL28383.1| ATP-dependent DNA helicase [Staphylococcus carnosus subsp. carnosus
TM300]
Length = 731
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 211/723 (29%), Positives = 344/723 (47%), Gaps = 116/723 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L ++N +Q EA PLLI+AG GSGK G+SP N+LA+TFT
Sbjct: 5 LDNMNTEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKGVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAREMKERVEKLVGEE-AQAIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ V+KR + D + M ++S+ K N+
Sbjct: 123 D-----------VLKRENIDPKRYEPR-------------MFIGAISNLK----NEL--- 151
Query: 410 GMDVAKASGKTP----AEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP AE ++ A + E Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPEDAVAEATDFMSDMVARVYEGYQRQLSRNAALDFDDLIMTTITLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
P+V + YQ+ ++ I VDE+QDT+ QY+L+Q+LA + +VGD DQSI+ + GADI
Sbjct: 203 PDVLEYYQNKFQYIHVDEYQDTNRAQYTLVQLLAKKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ N K I L +NYRST+ I+ AA+ +I++N +R + K + T N+ G KI E
Sbjct: 263 ILSFEEDYPNAKTIFLEQNYRSTKVILNAANEVIKNNTER-KPKGLWTANNEGKKINYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I+ S+ +AILYR +V + F + IP+ +
Sbjct: 322 AVTEKDEAQYVVKEIMRQQRENNK---SFNDMAILYRTNAQSRVLEETFMKANIPYTMVG 378
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID--HIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR I ++KI
Sbjct: 379 GHKFYDRKEIKDLLSYLRLVANSNDDISLQRIINV--------PKRGIGPTSVEKIQNYA 430
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ + IS + A G K+ ++ L+ +IS L++ + + IT + +
Sbjct: 431 QQNDISMFDALAEADFIGLSKKVV----KEALVFYNLISNLIKEQEFLE--ITEIVEEIL 484
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
+K ++ +L D L S + L ++ +F+S K N+ +++
Sbjct: 485 EKSGYKE----------MLERDQSLES--RSRLENIEEFMSVPMDYEK---NIPLEEQSL 529
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E D EN VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 530 INFLTDLSLVADIDE----------ADIENGVTLMTMHSAKGLEFPIVFIMGMEESIFPH 579
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQP---SRFLKEIP 936
+ ++ +EEERR+ YVA+TRA ++L++ + + +Q SRFLKEIP
Sbjct: 580 IRSIK---SDDEHEMEEERRICYVAITRAEEELYLTHATSRTLFGRIQSNAESRFLKEIP 636
Query: 937 HHL 939
L
Sbjct: 637 EDL 639
>gi|384564455|ref|ZP_10011559.1| ATP-dependent DNA helicase PcrA [Saccharomonospora glauca K62]
gi|384520309|gb|EIE97504.1| ATP-dependent DNA helicase PcrA [Saccharomonospora glauca K62]
Length = 816
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 219/756 (28%), Positives = 342/756 (45%), Gaps = 110/756 (14%)
Query: 238 PDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNIL 282
P +++ L LN Q AA PLL+VAG GSGK + P IL
Sbjct: 23 PATHAELLDDLNPAQ-RAAVEHRGRPLLVVAGAGSGKTRVLTRRIAYLLAERNVHPGQIL 81
Query: 283 AMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHG 342
A+TFT AA+EMRDR+ +VG+ A + +STFHS ++L R A+KLE TS F IY
Sbjct: 82 AITFTNKAAAEMRDRVVDLVGR-RAGAMWVSTFHSMCVRLLRREAKKLEMTSHFSIYDAD 140
Query: 343 QQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQ 402
RR + R L+ L KR L T H + L +
Sbjct: 141 DSRRLMTLVGRDLD----LDPKRYPARALAT--HVSNWKNELV--------DPDAAADAA 186
Query: 403 YNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLL 462
+ FER K +R+ Y L A+D+ DLI +V+L
Sbjct: 187 ASDFER----------KAAEAYRE------------YQRRLAQAGAMDFDDLIMRTVELF 224
Query: 463 STFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS---------HNRITIVGDDDQS 513
FP+V + Y+ ++ ++VDE+QDT+ QY+L++ L + + +VGD DQS
Sbjct: 225 QVFPDVAEHYRRRFRHVLVDEYQDTNHAQYTLVRELVGTEPTETGLEPSELCVVGDADQS 284
Query: 514 IFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTD 573
I++F GA I + F +DF + I L +NYRST+ I+ AA+++I N R K + TD
Sbjct: 285 IYAFRGATIRNIEEFERDFPDAHTILLEQNYRSTQTILSAANAVIARNPGRRD-KRLWTD 343
Query: 574 NSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
G I+ NE + AF+ +I G A +Y +A+ YR +VF+ F
Sbjct: 344 AGDGEPIVGYVADNEHDEAAFVAREIDALVDRGEA---TYSDVAVFYRTNNQSRVFEEIF 400
Query: 634 RERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID 692
+P+ + GV FY +K VR +A LR D RR+ K+ + D
Sbjct: 401 IRLGLPYRVVGGVRFYERKEVRDALAYLRVLANPDDTVSLRRILNV-------PKRGIGD 453
Query: 693 HIDKISTI----RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMIS---KLVRR 745
+ + + SF +A D ++ RSQ + + LE+I +LV
Sbjct: 454 RAEAVVATHAERERISFAAALRDAVAGRVPLLNPRSQ----KAISGFLELIDGLRELVDE 509
Query: 746 EPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKF 805
++ V+ +V + + LE+ D +L N D L + + T+F T
Sbjct: 510 GADVAEVLEAVLDRTGYRAELEESKDPQ-DASRLENLDE-----LVTVAREFTEFART-V 562
Query: 806 TAAKEEGNVDQDKKGCINVLKAFIDYIS------ERETEHFRTQRHDNENSVTLTTIHQS 859
A + G+ ++ L AF++ +S + D++ VTL T+H +
Sbjct: 563 RAESDAGDAEEAGVPEPGSLPAFLERVSLVADADSVPSPDGEAGEGDDQGVVTLMTVHTA 622
Query: 860 KGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMM 919
KGLE+ +VF + P + A+ E + EERRL YVA+TRA+++L++ ++
Sbjct: 623 KGLEYPVVFCTGWEDGVFPHLR----ALGEP-KELAEERRLAYVAITRAQRRLYVSRALV 677
Query: 920 DANWQLLQP-----SRFLKEIPHHLREVQAEQSVQD 950
W QP SRFL +IP L + + +Q ++
Sbjct: 678 RTAWG--QPMSNPASRFLDDIPERLLDWRRQQPARE 711
>gi|420178628|ref|ZP_14684957.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM057]
gi|420180951|ref|ZP_14687159.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM053]
gi|394246139|gb|EJD91403.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM057]
gi|394248264|gb|EJD93504.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM053]
Length = 729
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 217/734 (29%), Positives = 346/734 (47%), Gaps = 119/734 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++ +N +Q EA PLLI+AG GSGK +SP NILA+TFT
Sbjct: 5 VKKMNSEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ ++I
Sbjct: 64 AAKEMKARVEHLVGEE-AQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQK-SVI 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ V EN + KR M G ++ L
Sbjct: 122 KDVLKSEN---IDSKRFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP + +K + ++ A + + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PE + YQ+ ++ I VDE+QDT+ QY+L+++LA+ + +VGD DQSI+ + GADI
Sbjct: 203 PETLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ K I L +NYRST+ I+ AA+ +I+HN +R + K + T NS G KI E
Sbjct: 263 ILSFEEDYPEAKTIFLEQNYRSTKNILNAANEVIKHNSER-KPKGLWTANSGGDKIQYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++H G Y +AILYR +V + F + IP+ +
Sbjct: 322 AMTERDEAEYVVKEIMKHQRGGK----KYSEMAILYRTNAQSRVLEETFMKSNIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR I ++KI T
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINV--------PKRGIGPSSVEKIQTYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + G K+ +TQ + + EM L++ + + I+ + + V
Sbjct: 430 LQNNISMFDALAEVDFIGLSKK--VTQ--ECISFYEMFQNLIKEQEFLE--ISEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
QK G K +L+ + + S + L ++ +F+S E N +++
Sbjct: 484 QK-----------SGYKDMLDREQSIES--RSRLENLDEFMS---VPKDYEENTPLEEQS 527
Query: 821 CINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
IN L + + I E +T +N VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 528 LINFLTDLSLVADIDEADT----------QNGVTLMTMHSAKGLEFPIVFIMGMEESLFP 577
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
+ +E +EEERR+ YVA+TRA + L+I M+ Q PSRFLKEI
Sbjct: 578 HIRAIK---SEDDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKEI 634
Query: 936 PHHLREVQAEQSVQ 949
P L + Q Q
Sbjct: 635 PEDLLDSHTGQKRQ 648
>gi|376248123|ref|YP_005140067.1| putative ATP-dependent DNA helicase II [Corynebacterium diphtheriae
HC04]
gi|376256733|ref|YP_005144624.1| putative ATP-dependent DNA helicase II [Corynebacterium diphtheriae
VA01]
gi|372114691|gb|AEX80749.1| putative ATP-dependent DNA helicase II [Corynebacterium diphtheriae
HC04]
gi|372119250|gb|AEX82984.1| putative ATP-dependent DNA helicase II [Corynebacterium diphtheriae
VA01]
Length = 828
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 220/752 (29%), Positives = 348/752 (46%), Gaps = 121/752 (16%)
Query: 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAA 290
+ LN QQ +AA +PLLIVAG GSGK G+ P NILA+TFT A
Sbjct: 48 EGLNPQQ-KAAVEHYGSPLLIVAGAGSGKTSVLTRRIAYLMRVRGVQPQNILAITFTNKA 106
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAII 349
A+EMR+R+ S+VG A+ + +STFHS +++ R A+ + + F IY +R +
Sbjct: 107 AAEMRERVSSLVGP-VAQRMWVSTFHSTCVRILREQAQLVPGFNTNFTIYDSDDSKRLL- 164
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++ + L +K+ + +L T +S+ K N+
Sbjct: 165 ---SMISKDFSLDIKKFTPRLLAT--------------------GISNLK----NELIDA 197
Query: 410 GMDVAKA-SGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
A A S K P E A++ Y LR+ NA+D+ DLI +V++ P V
Sbjct: 198 DQACADAESTKNPYE------TTIASVFAEYQKRLRASNAVDFDDLIGETVRIFREHPPV 251
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH----NRITIVGDDDQSIFSFNGADISG 524
+ Y+ ++ +++DE+QDT+ QY+L+ L + + +VGD DQSI++F GA I
Sbjct: 252 TEYYRRRFRHVLIDEYQDTNHAQYALIHELVGSGPDASELCVVGDSDQSIYAFRGATIRN 311
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+ F +D+ N + I L +NYRST+ I+ AA+S+I N R + K + T G I+
Sbjct: 312 IEEFERDYPNAETILLEQNYRSTQTILNAANSVIAQNENRRE-KKLWTALGSGDPIVGYV 370
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
NE + FI +++ A G +Y IA++YR S + + F IP+ +
Sbjct: 371 ADNEHDEARFIANEVDALADKG----VAYSDIAVMYRTNNSSRAVEDVFMRTGIPYKVVG 426
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFK-----------AFLLLEKEEKKRVID 692
G FY +K +R IIA LR D RR+ AFL L
Sbjct: 427 GTRFYERKEIRDIIAYLRLIDNPDDAVSLRRIINTPRRGIGDKAVAFLSL---------- 476
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRRE------ 746
H D F A D K+S R GR + + K +R E
Sbjct: 477 HADN----HNVGFHKALLDATEDKVSMLGAR-----GRNAVTGFVDMMKGIREEAANKVN 527
Query: 747 -----PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFL 801
P I +++ + ++ K LE+ D G L+ N+L SV + ++ + +
Sbjct: 528 EVTGMPDIGDMVSYILDVTGYKAELEKSN--DPQDGARLDNLNELVSVAREFSSEAANQV 585
Query: 802 STKFTAAKEEG-NVDQDKKG--CINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIH 857
+ + A+ + + + +G L AF++ +S Q DNE VTL T+H
Sbjct: 586 AYERMGAENQAPEIPELSEGEAAPGSLMAFLERVSLVADAD---QIPDNEQGVVTLMTLH 642
Query: 858 QSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV 917
+KGLE+ +VF+ + + P + A+ E + EERRL YV +TRAR+ L++
Sbjct: 643 TAKGLEFPVVFLTGWEDGQFPHLR----ALGEP-KELAEERRLAYVGITRARRTLYLSRA 697
Query: 918 MMDANWQ---LLQPSRFLKEIPHHLREVQAEQ 946
M+ ++W PSRFL EIP L + + E+
Sbjct: 698 MLRSSWGNPVTNPPSRFLSEIPDELMDWRREE 729
>gi|419770617|ref|ZP_14296688.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus IS-K]
gi|383363230|gb|EID40569.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
aureus IS-K]
Length = 729
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 217/734 (29%), Positives = 348/734 (47%), Gaps = 119/734 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++++N +Q EA PLLI+AG GSGK +SP NILA+TFT
Sbjct: 5 VKNMNSEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ ++I
Sbjct: 64 AAKEMKARVEHLVGEE-AQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQK-SVI 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ V EN + KR M G ++ L
Sbjct: 122 KDVLKSEN---IDSKRFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP + +K + ++ A + + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTIILFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PE + YQ+ ++ I VDE+QDT+ QY+L+++LA+ + +VGD DQSI+ + GADI
Sbjct: 203 PETLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ K I L +NYRST+ I+ AA+ +I+HN +R + K + T NS G KI E
Sbjct: 263 ILSFEEDYPEAKTIFLEQNYRSTKNILNAANEVIKHNSER-KPKGLWTANSGGDKIQYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++H +G Y +AILYR +V + F + IP+ +
Sbjct: 322 AMTERDEAEYVVKEIMKHQRSGK----KYSEMAILYRTNAQSRVLEETFMKSNIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR I ++KI T
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINV--------PKRGIGPSSVEKIQTYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + G K+ +TQ + + EMI L++ + + I+ + + V
Sbjct: 430 LQNNISMFDALAEVDFIGLSKK--VTQ--ECISFYEMIQNLIKEQEFLE--ISEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
QK G + +L+ + + S + L ++ +F+S E N +++
Sbjct: 484 QK-----------SGYRDMLDREQSIES--RSRLENLDEFMS---VPKDYEENTPLEEQS 527
Query: 821 CINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
IN L + + I E D +N VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 528 LINFLTDLSLVADIDE----------ADTQNGVTLMTMHSAKGLEFPIVFIMGMEESLFP 577
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
+ +E +EEERR+ YVA+TRA + L+I M+ Q PSRFLKEI
Sbjct: 578 HIRAIK---SEDDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKEI 634
Query: 936 PHHLREVQAEQSVQ 949
P L + Q Q
Sbjct: 635 PEDLLDSHTGQKRQ 648
>gi|306835613|ref|ZP_07468623.1| ATP-dependent DNA helicase PcrA [Corynebacterium accolens ATCC
49726]
gi|304568504|gb|EFM44059.1| ATP-dependent DNA helicase PcrA [Corynebacterium accolens ATCC
49726]
Length = 847
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 212/750 (28%), Positives = 353/750 (47%), Gaps = 93/750 (12%)
Query: 238 PDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNIL 282
P E Q LN QQLEA PLLIVAG GSGK G++P IL
Sbjct: 43 PAESDPLTQGLNPQQLEAVT-HTGRPLLIVAGAGSGKTAVLTRRIAYLMRHRGVNPWEIL 101
Query: 283 AMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGH 341
A+TFT AA+EM++R+GS+VG A+ + +STFHS +++ R +A+ + + F IY
Sbjct: 102 AITFTNKAAAEMKERVGSLVGP-VAERMWVSTFHSICVRILRQNAQLVPGLNTNFTIYDG 160
Query: 342 GQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
RR + + ++ + R+ + ++ N ++ + ++ K
Sbjct: 161 DDARRLLSMIAKDMQLDLKKYTPRVLANQISN------------HKNELVGPAEAADKAQ 208
Query: 402 QY-NKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVK 460
Q N FE DV AE+++ LR+ NA+D+ DLI V+
Sbjct: 209 QTKNPFETTVADVY-------AEYQRR---------------LRAANAVDFDDLIGEVVR 246
Query: 461 LLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRIT-------IVGDDDQS 513
+ + +V + Y+ +K +++DE+QDT+ QY+L+ L + +VGD DQS
Sbjct: 247 IFTEHKQVVEFYRRRFKHVLIDEYQDTNHAQYALVAALVGKGELGPDAPELCVVGDSDQS 306
Query: 514 IFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTD 573
I++F GA I + F +D+ I L +NYRST+ I+ AA+++I N R + KN+ T
Sbjct: 307 IYAFRGATIRNIEEFERDYPQAHTILLEQNYRSTQTILNAANAVIAKNENRRE-KNLWTA 365
Query: 574 NSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
+ G I+ NE + FI +I A G SY IA++YR S + + F
Sbjct: 366 HGDGESIVGYVADNEHDEARFIAAEIDALADKG----HSYSDIAVMYRTNNSSRALEDIF 421
Query: 634 RERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID 692
IP+ + G FY ++ +R ++A LR D RR+ + ++ +
Sbjct: 422 IRSGIPYKVVGGTRFYERREIRDMVAYLRIMDNPDDTVSLRRIIN---VPKRAIGDKAQG 478
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRS--------QLTQGRKVLLTLEMISKLVR 744
I + + SF A D+ + G R+ + +G + + + V
Sbjct: 479 QIALHAENQGISFGKALADVPRGDVPGLGTRAVNAVTKFNDMMEG--IRAQIPGMRDEVT 536
Query: 745 REPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTK 804
+P + ++T++ + K LE+ D G L+ N+L SV + ++ + L+
Sbjct: 537 GQPDLGELLTAILDATGYKAELEKSN--DPQDGARLDNLNELVSVAREFTSEAANQLAAA 594
Query: 805 FTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIHQSKGLE 863
A + + ++ + L+AF++ +S Q D+E VT+ T+H +KGLE
Sbjct: 595 GADAVDPNELLEEGEAAPGSLQAFLEKVSLVADAD---QIPDSETGVVTMMTLHTAKGLE 651
Query: 864 WDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW 923
+ +VFVA + + P + N K + EERRL YV +TRAR+KL++ ++ + W
Sbjct: 652 FPVVFVAGWEDGQFPHMRSLG---NPK--ELSEERRLAYVGITRAREKLYLTRAILRSAW 706
Query: 924 --QLLQP-SRFLKEIPHHLREVQAEQSVQD 950
+ P SRFL EIP L + + E S D
Sbjct: 707 GNPVTNPASRFLAEIPEDLIDWRREDSDSD 736
>gi|452994703|emb|CCQ93678.1| ATP-dependent DNA helicase [Clostridium ultunense Esp]
Length = 733
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 221/729 (30%), Positives = 348/729 (47%), Gaps = 124/729 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
LQ LN+ Q +A PLLI+AG GSGK GISP +ILA+TFT A
Sbjct: 10 LQGLNETQRKAVL-STEGPLLILAGAGSGKTRVLTHRVAYLIAQGISPWSILAITFTNKA 68
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIE 350
A EM++R+ +VG+ + +E+ ISTFH+ +++ R E++ + F I Q ++I
Sbjct: 69 AKEMKERVEKLVGQGS-EEIWISTFHALCVRILRRDGEQIGLSRNFSIL-DTQDSLSVIR 126
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
V EK L K+ R+ L ++
Sbjct: 127 GVL---KEKNLDPKKYEP------------RSVLGKISGW-------------------- 151
Query: 411 MDVAKASGKTPAEF------RKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLST 464
K GK PA+ R + I + Y L + ALD+ DL+ ++ L +
Sbjct: 152 ----KNEGKKPADVERELSHRDVALRTFLEIYKGYEAKLAAAQALDFDDLLLKTIDLFRS 207
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADIS 523
PE + YQ+ ++ I VDE+QDT+ +QY L+++LAS H + +VGD DQSI+ F GAD+
Sbjct: 208 APETLRYYQNKFRYIHVDEYQDTNHIQYLLVKMLASLHRNLCVVGDGDQSIYRFRGADVR 267
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
F +D+ K I L +NYRST+ I++AA+++I +N R + KN+ T+N G KI +
Sbjct: 268 NILLFERDYPEAKTILLEQNYRSTQTILDAANAVIANNRARKE-KNLWTENGQGGKIRLF 326
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI- 642
E+ + F+ +I + G YG IA+LYR ++F+ + IP+ I
Sbjct: 327 RGLTEEEEALFLAAEIKKTVEEG----YRYGEIAVLYRTNAQSRLFEETLMKANIPYKIV 382
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRK 702
G+ FY +K ++ + A LR DD ++RV + ++ + +D +++I+
Sbjct: 383 GGIRFYERKEIKDLTAYLRLIANPHDDISFQRVVN---VPKRGIGEATLDRLEEIAAREG 439
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S +A + IS T S+L Q R ++L+L +SK +T + V +
Sbjct: 440 ISLFTAVEEGEEWGISPTI-LSRLRQFRDLILSLNELSK--------ELTVTEITREVLE 490
Query: 763 K--YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
K Y L A D +G Q L ++ +FL+ T A D++ +G
Sbjct: 491 KTGYRLALAAEKDLEG--------------QSRLENLEEFLTV--TKA-----FDEEHEG 529
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIHQSKGLEWDIVFVAKANETEIPL 879
+L ID++S+ Q + E S VTL T+H +KGLE+ +VF+ E P
Sbjct: 530 ERGLL---IDFLSDLALVSDIDQLEEGEGSPVTLMTLHSAKGLEFPVVFLVGMEEGIFPH 586
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM-------MDANWQLLQPSRFL 932
+EEERRL YV +TRA+++L + Y + +AN PSRFL
Sbjct: 587 SRSLMDE-----EEMEEERRLCYVGITRAKERLTLTYALSRTLYGRTNAN----PPSRFL 637
Query: 933 KEIPHHLRE 941
+EIP L E
Sbjct: 638 REIPDDLIE 646
>gi|332638904|ref|ZP_08417767.1| ATP-dependent DNA helicase PcrA [Weissella cibaria KACC 11862]
Length = 763
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 218/732 (29%), Positives = 343/732 (46%), Gaps = 122/732 (16%)
Query: 242 SKYLQSLNDQQLEAACGDMST--PLLIVAGPGSGK---------------GISPSNILAM 284
S L +ND+Q EA M+T PLLI+AG GSGK + P ILA+
Sbjct: 2 SSLLDGMNDKQAEAV---MTTEGPLLIMAGAGSGKTRVLTHRVAHLIKDLNVMPWRILAI 58
Query: 285 TFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQ 344
TFT AA EM++RIG +V A + +STFH+ ++++ R +KL +F I G Q
Sbjct: 59 TFTNKAAREMKERIGQLVDAEDADAVWVSTFHALAVRILRRDIDKLGYKKDFSIIDAGAQ 118
Query: 345 RRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYN 404
R +VKRI D L D R+ L ++S+ K N
Sbjct: 119 R---------------TLVKRILKD-LNVDIEKYDPRSVLG--------AISNAK----N 150
Query: 405 KFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLST 464
E+ KA+G P E EI A Y L ++D+ DLI +++LL
Sbjct: 151 AMEKPATYTEKANG--PFE------EIVAKAYTEYQHQLAIAQSVDFDDLIMLTIELLHQ 202
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADIS 523
PEV + YQ+ + + VDE+QDT+ QY L+ +L A H + +VGD DQSI+ + GA++
Sbjct: 203 EPEVLEFYQEKFLYVHVDEYQDTNDAQYELVTLLSAKHRNLAVVGDSDQSIYGWRGANMQ 262
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
+F KD+ + K + L +NYRST+ I++AA+++I+HN +R KN+ TDN G KI
Sbjct: 263 IILNFNKDYKDAKTVMLEQNYRSTQTILDAANAVIEHNNERIA-KNLWTDNGMGDKITYY 321
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-I 642
++ + ++I +I + N +Y A+LYR + + A + +P+ +
Sbjct: 322 RGQSDKDEALYVIAQIRDGVQNQE---RNYRDFAVLYRTNAQSRGIEEALVKANMPYTMV 378
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH--IDKISTI 700
G FY +K +R ++A L D+ + RV E KR I + I+K+
Sbjct: 379 GGSKFYERKEIRDVLAYLALVTNPADNESFLRVVN--------EPKRGIGNTSIEKLRAF 430
Query: 701 ---RKCSFISAACDIFGAKISGTFKRS--QLTQGRKVLLTLEMISKLVRREPSISAVITS 755
+ +A + I G R+ QLTQ +++ TL R++ + IT
Sbjct: 431 ALQNDWPLLDSATN--AVMIPGLTTRAANQLTQFAELISTL-------RQQTTFDLSITD 481
Query: 756 VANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVD 815
+ + + E++ F L ++ ++L VT+ K+ +E
Sbjct: 482 LTRQILDRTGYEEQ----FKASPTPENQGRLENLAEFL--SVTEEFDKKYEPTEES---- 531
Query: 816 QDKKGCINVLKAFIDYISERE-TEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
+ ++D++ E + D +N VTL T+H +KGLE+ +VF+ E
Sbjct: 532 ---------ISKYVDFLGELALVSDLDSVDEDTDNQVTLMTLHAAKGLEFPVVFLVGMEE 582
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQ 927
PL A ++ +EEERRL YV +TRA++KLFI LY +N
Sbjct: 583 NLFPLSR---AAADD--AQLEEERRLAYVGITRAKEKLFITNAYSRLLYGRTTSNI---- 633
Query: 928 PSRFLKEIPHHL 939
PSRF+ EI L
Sbjct: 634 PSRFIDEISPEL 645
>gi|358446635|ref|ZP_09157179.1| ATP-dependent DNA helicase PcrA [Corynebacterium casei UCMA 3821]
gi|356607439|emb|CCE55521.1| ATP-dependent DNA helicase PcrA [Corynebacterium casei UCMA 3821]
Length = 916
Score = 248 bits (633), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 208/740 (28%), Positives = 358/740 (48%), Gaps = 92/740 (12%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFT 287
K + LN +Q+EA PLL VAG GSGK G++P ILA+TFT
Sbjct: 121 KLVDGLNPEQIEA-VKHSGAPLLTVAGAGSGKTAVLTRRIAYLMGNRGVAPWEILAITFT 179
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRR 346
AA+EM++R+G +VG A+ + ++TFHS +++ R A+ + + F IY RR
Sbjct: 180 NKAAAEMKERVGQLVGP-VAERMWVATFHSICVRILRQQAQLVPGLNTNFTIYDGDDSRR 238
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
+ ++ + L +K+ ++ +L +S+ K N+
Sbjct: 239 LLT----MIAKDMQLDIKKFTSRVLAN--------------------QISNHK----NEM 270
Query: 407 ERDGMDVAKAS-GKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+A+A K P E A + Y LR+ NA+D+ DLI V++ +
Sbjct: 271 TPPETALAEAEKTKNPFELTV------ARVFAEYQRRLRAANAVDFDDLIGEVVRIFVQY 324
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-----RITIVGDDDQSIFSFNGA 520
P+V Y+ +K +++DE+QDT+ QYSL+ L + + +VGD DQSI++F GA
Sbjct: 325 PQVVSFYRRRFKHVLIDEYQDTNHAQYSLVAALVGQDDEESPELCVVGDSDQSIYAFRGA 384
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
I + F +D+ + I L +NYRST+ I+ AA+++I N R + KN+ TD+ G KI
Sbjct: 385 TIRNIEDFERDYPGARTILLEQNYRSTQTILSAANAVIAQNEGRRK-KNLWTDHGEGEKI 443
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
I NE + FI +I + G Y IAI+YR + + + F IP+
Sbjct: 444 IGYVADNEHDEARFIASEIDALSDKG----RHYSDIAIMYRTNNASRALEDIFVRSGIPY 499
Query: 641 N-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAF-LLLEKEEKKRVIDHIDKIS 698
+ G FY ++ +R +IA LR D RR+ + + + ++ H + ++
Sbjct: 500 KVVGGTRFYERREIRDVIAYLRILDNPDDSVSLRRIINVPKRAIGDKAQAQIATHAENLN 559
Query: 699 -TIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTL-EMISKL---VRREPSISAVI 753
+ K + + ++ G GT + +T+ +++ + E I + V ++P + ++
Sbjct: 560 ISFGKALYFAEQGEVPGL---GTRAVNAVTKFNEMMAGIREQIPAMTNEVTKQPDLGELV 616
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
+++ + K LE A D G L+ N+L SV + ++ + L+ F + +
Sbjct: 617 SAILDSTGYKGELE--ASNDPQDGARLDNLNELVSVAREFSSESANQLA--FDGSDSDVE 672
Query: 814 VD---QDKKGCINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIHQSKGLEWDIVFV 869
V + + L+AF++ ++ Q +NE+ VTL T+H +KGLE+ +VF+
Sbjct: 673 VAPELTEGEAAPGSLQAFLEKVALVADAD---QIPENESGVVTLMTLHTAKGLEFPVVFL 729
Query: 870 AKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW--QLLQ 927
E + P + + EERRL YV +TRAR++L++ ++ ++W L
Sbjct: 730 TGWEEGQFPHMRSLGDP-----KELSEERRLAYVGITRAREELYLTRAILRSSWGNPLTN 784
Query: 928 P-SRFLKEIPHHLREVQAEQ 946
P SRFL EIP L + + EQ
Sbjct: 785 PASRFLGEIPEDLIDWRREQ 804
>gi|251809891|ref|ZP_04824364.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
BCM-HMP0060]
gi|282874545|ref|ZP_06283430.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis SK135]
gi|417912867|ref|ZP_12556549.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU109]
gi|421608730|ref|ZP_16049944.1| ATP-dependent DNA helicase [Staphylococcus epidermidis AU12-03]
gi|251806556|gb|EES59213.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
BCM-HMP0060]
gi|281296684|gb|EFA89193.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis SK135]
gi|341657086|gb|EGS80783.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU109]
gi|406655620|gb|EKC82045.1| ATP-dependent DNA helicase [Staphylococcus epidermidis AU12-03]
Length = 729
Score = 248 bits (633), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 217/734 (29%), Positives = 348/734 (47%), Gaps = 119/734 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++++N +Q EA PLLI+AG GSGK +SP NILA+TFT
Sbjct: 5 VKNMNSEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ ++I
Sbjct: 64 AAKEMNARVEHLVGEE-AQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQK-SVI 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ V EN + KR M G ++ L
Sbjct: 122 KDVLKSEN---IDSKRFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP + +K + ++ A + + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PE + YQ+ ++ I VDE+QDT+ QY+L+++LA+ + +VGD DQSI+ + GADI
Sbjct: 203 PETLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ K I L +NYRST+ I+ AA+ +I+HN +R + K + T NS G KI E
Sbjct: 263 ILSFEEDYPEAKTIFLEQNYRSTKNILNAANEVIKHNSER-KPKGLWTANSGGDKIQYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++H +G Y +AILYR +V + F + IP+ +
Sbjct: 322 AMTERDEAEYVVKEIMKHQRSGK----KYSEMAILYRTNAQSRVLEETFMKSNIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR I ++KI T
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINV--------PKRGIGPSSVEKIQTYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + G K+ +TQ + + EMI L++ + + I+ + + V
Sbjct: 430 LQNNISMFDALAEVDFIGLSKK--VTQ--ECISFYEMIQNLIKEQEFLE--ISEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
QK G + +L+ + + S + L ++ +F+S E N +++
Sbjct: 484 QK-----------SGYRDMLDREQSIES--RSRLENLDEFMS---VPKDYEENTPLEEQS 527
Query: 821 CINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
IN L + + I E +T +N VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 528 LINFLTDLSLVADIDEADT----------QNGVTLMTMHSAKGLEFPIVFIMGMEESLFP 577
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
+ +E +EEERR+ YVA+TRA + L+I M+ Q PSRFLKEI
Sbjct: 578 HIRAIK---SEDDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKEI 634
Query: 936 PHHLREVQAEQSVQ 949
P L + Q Q
Sbjct: 635 PEDLLDSHTGQKRQ 648
>gi|376289960|ref|YP_005162207.1| putative ATP-dependent DNA helicase II [Corynebacterium diphtheriae
C7 (beta)]
gi|372103356|gb|AEX66953.1| putative ATP-dependent DNA helicase II [Corynebacterium diphtheriae
C7 (beta)]
Length = 828
Score = 248 bits (633), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 220/752 (29%), Positives = 348/752 (46%), Gaps = 121/752 (16%)
Query: 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAA 290
+ LN QQ +AA +PLLIVAG GSGK G+ P NILA+TFT A
Sbjct: 48 EGLNPQQ-KAAVEHYGSPLLIVAGAGSGKTSVLTRRIAYLMRVRGVQPQNILAITFTNKA 106
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAII 349
A+EMR+R+ S+VG A+ + +STFHS +++ R A+ + + F IY +R +
Sbjct: 107 AAEMRERVSSLVGP-VAQRMWVSTFHSTCVRILREQAQLVPGLNTNFTIYDSDDSKRLL- 164
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++ + L +K+ + +L T +S+ K N+
Sbjct: 165 ---SMISKDFSLDIKKFTPRLLAT--------------------GISNLK----NELIDA 197
Query: 410 GMDVAKA-SGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
A A S K P E A++ Y LR+ NA+D+ DLI +V++ P V
Sbjct: 198 DQACADAESTKNPYE------TTIASVFAEYQKRLRASNAVDFDDLIGETVRIFREHPPV 251
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH----NRITIVGDDDQSIFSFNGADISG 524
+ Y+ ++ +++DE+QDT+ QY+L+ L + + +VGD DQSI++F GA I
Sbjct: 252 TEYYRRRFRHVLIDEYQDTNHAQYALIHELVGSGPDASELCVVGDSDQSIYAFRGATIRN 311
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+ F +D+ N + I L +NYRST+ I+ AA+S+I N R + K + T G I+
Sbjct: 312 IEEFERDYPNAETILLEQNYRSTQTILNAANSVIAQNENRRE-KKLWTALGSGDPIVGYV 370
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
NE + FI +++ A G +Y IA++YR S + + F IP+ +
Sbjct: 371 ADNEHDEARFIANEVDALADKG----VAYSDIAVMYRTNNSSRAVEDVFMRTGIPYKVVG 426
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFK-----------AFLLLEKEEKKRVID 692
G FY +K +R IIA LR D RR+ AFL L
Sbjct: 427 GTRFYERKEIRDIIAYLRLIDNPDDAVSLRRIINTPRRGIGDKAVAFLSL---------- 476
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRRE------ 746
H D F A D K+S R GR + + K +R E
Sbjct: 477 HADN----HNVGFHKALLDATEDKVSMLGAR-----GRNAVTGFVDMMKGIREEAANKVN 527
Query: 747 -----PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFL 801
P I +++ + ++ K LE+ D G L+ N+L SV + ++ + +
Sbjct: 528 EVTGMPDIGDMVSYILDVTGYKAELEKSN--DPQDGARLDNLNELVSVAREFSSEAANQV 585
Query: 802 STKFTAAKEEG-NVDQDKKG--CINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIH 857
+ + A+ + + + +G L AF++ +S Q DNE VTL T+H
Sbjct: 586 AYERMGAENQAPEIPELSEGEAAPGSLMAFLERVSLVADAD---QIPDNEQGVVTLMTLH 642
Query: 858 QSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV 917
+KGLE+ +VF+ + + P + A+ E + EERRL YV +TRAR+ L++
Sbjct: 643 TAKGLEFPVVFLTGWEDGQFPHLR----ALGEP-KELAEERRLAYVGITRARRTLYLSRA 697
Query: 918 MMDANWQ---LLQPSRFLKEIPHHLREVQAEQ 946
M+ ++W PSRFL EIP L + + E+
Sbjct: 698 MLRSSWGNPVTNPPSRFLSEIPDELMDWRREE 729
>gi|420171203|ref|ZP_14677750.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM070]
gi|420209739|ref|ZP_14715174.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM003]
gi|394238386|gb|EJD83855.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM070]
gi|394277741|gb|EJE22060.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM003]
Length = 729
Score = 248 bits (633), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 217/734 (29%), Positives = 348/734 (47%), Gaps = 119/734 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++++N +Q EA PLLI+AG GSGK +SP NILA+TFT
Sbjct: 5 VKNMNSEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ ++I
Sbjct: 64 AAKEMNARVEHLVGEE-AQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQK-SVI 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ V EN + KR M G ++ L
Sbjct: 122 KDVLKSEN---IDSKRFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP + +K + ++ A + + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PE + YQ+ ++ I VDE+QDT+ QY+L+++LA+ + +VGD DQSI+ + GADI
Sbjct: 203 PETLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ K I L +NYRST+ I+ AA+ +I+HN +R + K + T NS G KI E
Sbjct: 263 ILSFEEDYPEAKTIFLEQNYRSTKNILNAANEVIKHNSER-KPKGLWTANSGGDKIQYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++H +G Y +AILYR +V + F + IP+ +
Sbjct: 322 AMTERDEAEYVVKEIMKHQRSGK----KYSEMAILYRTNAQSRVLEETFMKANIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR I ++KI T
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINV--------PKRGIGPSSVEKIQTYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + G K+ +TQ + + EMI L++ + + I+ + + V
Sbjct: 430 LQNNISMFDALAEVDFIGLSKK--VTQ--ECISFYEMIQNLIKEQEFLE--ISEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
QK G + +L+ + + S + L ++ +F+S E N +++
Sbjct: 484 QK-----------SGYRDMLDREQSIES--RSRLENLDEFMS---VPKDYEENTPLEEQS 527
Query: 821 CINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
IN L + + I E +T +N VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 528 LINFLTDLSLVADIDEADT----------QNGVTLMTMHSAKGLEFPIVFIMGMEESLFP 577
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
+ +E +EEERR+ YVA+TRA + L+I M+ Q PSRFLKEI
Sbjct: 578 HIRAIK---SEDDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKEI 634
Query: 936 PHHLREVQAEQSVQ 949
P L + Q Q
Sbjct: 635 PEDLLDSHTGQKRQ 648
>gi|376284342|ref|YP_005157552.1| putative ATP-dependent DNA helicase II [Corynebacterium diphtheriae
31A]
gi|371577857|gb|AEX41525.1| putative ATP-dependent DNA helicase II [Corynebacterium diphtheriae
31A]
Length = 828
Score = 248 bits (633), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 220/752 (29%), Positives = 348/752 (46%), Gaps = 121/752 (16%)
Query: 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAA 290
+ LN QQ +AA +PLLIVAG GSGK G+ P NILA+TFT A
Sbjct: 48 EGLNPQQ-KAAVEHCGSPLLIVAGAGSGKTSVLTRRIAYLMRVRGVQPQNILAITFTNKA 106
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAII 349
A+EMR+R+ S+VG A+ + +STFHS +++ R A+ + + F IY +R +
Sbjct: 107 AAEMRERVSSLVGP-VAQRMWVSTFHSTCVRILREQAQLVPGLNTNFTIYDSDDSKRLL- 164
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++ + L +K+ + +L T +S+ K N+
Sbjct: 165 ---SMISKDFSLDIKKFTPRLLAT--------------------GISNLK----NELIDA 197
Query: 410 GMDVAKA-SGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
A A S K P E A++ Y LR+ NA+D+ DLI +V++ P V
Sbjct: 198 DQTCADAESTKNPYE------TTIASVFAEYQKRLRASNAVDFDDLIGETVRIFREHPPV 251
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH----NRITIVGDDDQSIFSFNGADISG 524
+ Y+ ++ +++DE+QDT+ QY+L+ L + + +VGD DQSI++F GA I
Sbjct: 252 TEYYRRRFRHVLIDEYQDTNHAQYALIHELVGSGPDASELCVVGDSDQSIYAFRGATIRN 311
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+ F +D+ N + I L +NYRST+ I+ AA+S+I N R + K + T G I+
Sbjct: 312 IEEFERDYPNAETILLEQNYRSTQTILNAANSVIAQNENRRE-KKLWTALGSGDPIVGYV 370
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
NE + FI +++ A G +Y IA++YR S + + F IP+ +
Sbjct: 371 ADNEHDEARFIANEVDALADKG----VAYSDIAVMYRTNNSSRAVEDVFMRTGIPYKVVG 426
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFK-----------AFLLLEKEEKKRVID 692
G FY +K +R IIA LR D RR+ AFL L
Sbjct: 427 GTRFYERKEIRDIIAYLRLIDNPDDAVSLRRIINTPRRGIGDKAVAFLSL---------- 476
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRRE------ 746
H D F A D K+S R GR + + K +R E
Sbjct: 477 HADN----HNVGFHKALLDATEDKVSMLGAR-----GRNAVTGFVDMMKGIREEAANKVN 527
Query: 747 -----PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFL 801
P I +++ + ++ K LE+ D G L+ N+L SV + ++ + +
Sbjct: 528 EVTGMPDIGDMVSYILDVTGYKAELEKSN--DPQDGARLDNLNELVSVAREFSSEAANQV 585
Query: 802 STKFTAAKEEG-NVDQDKKG--CINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIH 857
+ + A+ + + + +G L AF++ +S Q DNE VTL T+H
Sbjct: 586 AYERMGAENQAPEIPELSEGEAAPGSLMAFLERVSLVADAD---QIPDNEQGVVTLMTLH 642
Query: 858 QSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV 917
+KGLE+ +VF+ + + P + A+ E + EERRL YV +TRAR+ L++
Sbjct: 643 TAKGLEFPVVFLTGWEDGQFPHLR----ALGEP-KELAEERRLAYVGITRARRTLYLSRA 697
Query: 918 MMDANWQ---LLQPSRFLKEIPHHLREVQAEQ 946
M+ ++W PSRFL EIP L + + E+
Sbjct: 698 MLRSSWGNPVTNPPSRFLSEIPDELMDWRREE 729
>gi|406912898|gb|EKD52417.1| hypothetical protein ACD_62C00033G0007 [uncultured bacterium]
Length = 739
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 208/716 (29%), Positives = 339/716 (47%), Gaps = 116/716 (16%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA PLLI+AG GSGK G++P NI+A+TFT AA
Sbjct: 3 LNPKQQEA-VEHRDGPLLILAGAGSGKTRVLVERIVRLMQTGGVNPWNIMAVTFTNKAAK 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ +G+ A +L ++TFHSF L+L R HAE L + F IY QR
Sbjct: 62 EMKERVAQSMGQ-RANDLWMATFHSFCLRLLRRHAEVLNYHTHFTIYDDLDQRS------ 114
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQY--NKFERDG 410
++K+I DM +D Y AS+ QY NK + DG
Sbjct: 115 ---------LIKKILKDMQLSDT--VYKPASI-----------------QYHINKAKNDG 146
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
+ +K+G AI Y L A+D+ DLI ++ L PE+
Sbjct: 147 IKAEDFPSGGDFFLKKVG-----AIFAEYQKHLILNQAMDFGDLIVNALHLFGKSPEILS 201
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDSFR 529
+YQ+ ++ I+VDE+QDT+ QY+L+++LA + + +VGDDDQSI+ F GA+I F+
Sbjct: 202 KYQNQFQHILVDEYQDTNKSQYALIRLLADKWKNVCVVGDDDQSIYKFRGAEIRNILDFQ 261
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
+D+ K IRL +NYRST+ I+ A++++I+ N +R K + T N G I + +
Sbjct: 262 RDYPQAKVIRLEQNYRSTQNILNASNAVIRGNTERMG-KELWTQNGQGECIRMFGGQTDH 320
Query: 590 AQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFY 648
+ F+ I+ H G +AI YR ++ + + R+ KIP+ I G+ FY
Sbjct: 321 DEAEFVCSSIMSHREK-----YRLGDMAIFYRTNAQSRILEDSLRKHKIPYRIFGGIKFY 375
Query: 649 RKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISA 708
+ ++ +++ L+T + + +R+ + K ++ ID + F
Sbjct: 376 DRAEIKDMMSYLKTLVNPSNTISLKRILNT---PARGIGKTTVERIDAAADRESACFWDV 432
Query: 709 ACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKL--VRREPSISAVITSVANMVPQKYLL 766
+ + + +T K+ +++I++L R+E + +T +L
Sbjct: 433 ISSVSDPRWALELNTGTMT---KIEDFVKLIARLNQARQEIPLDDFLT---------FLY 480
Query: 767 EQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST--KFTAAKEEGNVDQDKKGCINV 824
EQ ++L + + + Q ++T+F + + EEG
Sbjct: 481 EQTGY-----WQMLTAEKTIEA--QSRQENLTEFTNVLDDYLHENEEG-----------T 522
Query: 825 LKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
L++F+D IS +T+ + DN + V L T+H +KGLE+ +VF+ E P V F
Sbjct: 523 LESFLDQISLASDTD----KMDDNTDFVNLMTVHLAKGLEYPVVFLVGLEEGLFPHVRSF 578
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+K ++EERRL YV MTRA++ L I +V + + Q SRFL EIP
Sbjct: 579 -----DKPEDIQEERRLCYVGMTRAKELLHISFVNERKLFGSTQYQIASRFLDEIP 629
>gi|38233432|ref|NP_939199.1| ATP-dependent DNA helicase [Corynebacterium diphtheriae NCTC 13129]
gi|38199692|emb|CAE49351.1| ATP-dependent DNA helicase [Corynebacterium diphtheriae]
Length = 805
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 220/752 (29%), Positives = 348/752 (46%), Gaps = 121/752 (16%)
Query: 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAA 290
+ LN QQ +AA +PLLIVAG GSGK G+ P NILA+TFT A
Sbjct: 25 EGLNPQQ-KAAVEHYGSPLLIVAGAGSGKTSVLTRRIAYLMRVRGVQPQNILAITFTNKA 83
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAII 349
A+EMR+R+ S+VG A+ + +STFHS +++ R A+ + + F IY +R +
Sbjct: 84 AAEMRERVSSLVGP-VAQRMWVSTFHSTCVRILREQAQLVPGLNTNFTIYDSDDSKRLL- 141
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++ + L +K+ + +L T +S+ K N+
Sbjct: 142 ---SMISKDFSLDIKKFTPRLLAT--------------------GISNLK----NELIDA 174
Query: 410 GMDVAKA-SGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
A A S K P E A++ Y LR+ NA+D+ DLI +V++ P V
Sbjct: 175 DQACADAESTKNPYE------TTIASVFAEYQKRLRASNAVDFDDLIGETVRIFREHPPV 228
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH----NRITIVGDDDQSIFSFNGADISG 524
+ Y+ ++ +++DE+QDT+ QY+L+ L + + +VGD DQSI++F GA I
Sbjct: 229 TEYYRRRFRHVLIDEYQDTNHAQYALIHELVGSGPDASELCVVGDSDQSIYAFRGATIRN 288
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+ F +D+ N + I L +NYRST+ I+ AA+S+I N R + K + T G I+
Sbjct: 289 IEEFERDYPNAETILLEQNYRSTQTILNAANSVIAQNENRRE-KKLWTALGSGDPIVGYV 347
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
NE + FI +++ A G +Y IA++YR S + + F IP+ +
Sbjct: 348 ADNEHDEARFIANEVDALADKG----VAYSDIAVMYRTNNSSRAVEDVFMRTGIPYKVVG 403
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFK-----------AFLLLEKEEKKRVID 692
G FY +K +R IIA LR D RR+ AFL L
Sbjct: 404 GTRFYERKEIRDIIAYLRLIDNPDDAVSLRRIINTPRRGIGDKAVAFLSL---------- 453
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRRE------ 746
H D F A D K+S R GR + + K +R E
Sbjct: 454 HADN----HNVGFHKALLDATEDKVSMLGAR-----GRNAVTGFVDMMKGIREEAANKVN 504
Query: 747 -----PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFL 801
P I +++ + ++ K LE+ D G L+ N+L SV + ++ + +
Sbjct: 505 EVTGMPDIGDMVSYILDVTGYKAELEKSN--DPQDGARLDNLNELVSVAREFSSEAANQV 562
Query: 802 STKFTAAKEEG-NVDQDKKG--CINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIH 857
+ + A+ + + + +G L AF++ +S Q DNE VTL T+H
Sbjct: 563 AYERMGAENQAPEIPELSEGEAAPGSLMAFLERVSLVADAD---QIPDNEQGVVTLMTLH 619
Query: 858 QSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV 917
+KGLE+ +VF+ + + P + A+ E + EERRL YV +TRAR+ L++
Sbjct: 620 TAKGLEFPVVFLTGWEDGQFPHLR----ALGEP-KELAEERRLAYVGITRARRTLYLSRA 674
Query: 918 MMDANWQ---LLQPSRFLKEIPHHLREVQAEQ 946
M+ ++W PSRFL EIP L + + E+
Sbjct: 675 MLRSSWGNPVTNPPSRFLSEIPDELMDWRREE 706
>gi|333026613|ref|ZP_08454677.1| putative ATP-dependent DNA helicase II [Streptomyces sp. Tu6071]
gi|332746465|gb|EGJ76906.1| putative ATP-dependent DNA helicase II [Streptomyces sp. Tu6071]
Length = 817
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 211/728 (28%), Positives = 327/728 (44%), Gaps = 108/728 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN +Q AA +PLLIVAG GSGK G+ P ILA+TFT
Sbjct: 59 LTGLNPEQA-AAVVHSGSPLLIVAGAGSGKTRVLTHRIAYLLGRRGVHPGAILAITFTNK 117
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A + +STFHS +++ R ++KL TS F IY +R +
Sbjct: 118 AAGEMKERVEQLVGP-RAGAMWVSTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMA 176
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R L+ L KR T +S+ K N+
Sbjct: 177 LVCRDLD----LDPKRFPPKSFTA--------------------KISNLK----NELIDA 208
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ +G+ F K + Y LR NALD+ D+I +V LL FP V
Sbjct: 209 EAYADEVAGEAAGAFEKTLSQA----YTMYQARLREANALDFDDIIMTTVHLLQAFPNVA 264
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN---------------RITIVGDDDQSI 514
+ Y+ ++ ++VDE+QDT+ QY+L++ L + +VGD DQSI
Sbjct: 265 EHYRRRFRHVLVDEYQDTNHAQYTLVKELVGPADGGTGYDGGPAPEPAELCVVGDADQSI 324
Query: 515 FSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDN 574
++F GA I F +D+ N K I L +NYRST+ I+ AA+++I+ N R + KN+ T+
Sbjct: 325 YAFRGATIRNILQFEEDYPNAKTILLEQNYRSTQTILSAANAVIERNENR-RPKNLWTEA 383
Query: 575 SHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFR 634
+G KI E + F+ D+I G A G +A+ YR +VF+ F
Sbjct: 384 GNGPKITGYVADTEHDEAQFVADEIDRLTDAGDAKP---GDVAVFYRTNAQSRVFEEVFI 440
Query: 635 ERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH 693
+P+ + GV FY ++ VR ++A LR D P RR+ E + +ID
Sbjct: 441 RVGLPYKVVGGVRFYERREVRDVLAYLRVLANPEDSVPLRRILNVPKRGIGERSEAMIDA 500
Query: 694 IDKISTIRKCSFISAACDIFG--AKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISA 751
+ + I + + +G A+ + KR +E + +V +
Sbjct: 501 LSQRERITFPQALQRVDEAYGMAARSANAIKRFN--------TLMEELRTIVESGAGPAV 552
Query: 752 VITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEE 811
V+ +V YL E +A D +D LQ L + +F E+
Sbjct: 553 VLEAVLEQT--GYLAELQASTD-------PQDETRIENLQELASVALEF---------EQ 594
Query: 812 GNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAK 871
D++ G L F++ ++ D + +TL T+H +KGLE+ +VF++
Sbjct: 595 ERSDEEGTGT---LAEFLEKVALVADSDQIPDEEDGDGVITLMTLHTAKGLEFPVVFLSG 651
Query: 872 ANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQP 928
+ P + G V E +EEERRL YV +TRAR++L++ + + W Q P
Sbjct: 652 MEDGVFPHMRAL-GQVKE----LEEERRLAYVGITRARERLYLTRSTLRSAWGQPQYNPP 706
Query: 929 SRFLKEIP 936
SRFL+EIP
Sbjct: 707 SRFLEEIP 714
>gi|418328976|ref|ZP_12940067.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
14.1.R1.SE]
gi|365231336|gb|EHM72386.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
14.1.R1.SE]
Length = 677
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 217/734 (29%), Positives = 346/734 (47%), Gaps = 119/734 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++ +N +Q EA PLLI+AG GSGK +SP NILA+TFT
Sbjct: 5 VKKMNSEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ ++I
Sbjct: 64 AAKEMKARVEHLVGEE-AQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQK-SVI 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ V EN + KR M G ++ L
Sbjct: 122 KDVLKSEN---IDSKRFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP + +K + ++ A + + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PE + YQ+ ++ I VDE+QDT+ QY+L+++LA+ + +VGD DQSI+ + GADI
Sbjct: 203 PETLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ K I L +NYRST+ I+ AA+ +I+HN +R + K + T NS G KI E
Sbjct: 263 ILSFEEDYPEAKTIFLEQNYRSTKNILNAANEVIKHNSER-KPKGLWTANSGGDKIQYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++H G Y +AILYR +V + F + IP+ +
Sbjct: 322 AMTERDEAEYVVKEIMKHQRGGK----KYSEMAILYRTNAQSRVLEETFMKSNIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR I ++KI T
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINV--------PKRGIGPSSVEKIQTYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + G K+ +TQ + + EM L++ + + I+ + + V
Sbjct: 430 LQNNISMFDALAEVDFIGLSKK--VTQ--ECISFYEMFQNLIKEQEFLE--ISEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
QK G K +L+ + + S + L ++ +F+S E N +++
Sbjct: 484 QK-----------SGYKDMLDREQSIES--RSRLENLDEFMS---VPKDYEENTPLEEQS 527
Query: 821 CINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
IN L + + I E +T +N VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 528 LINFLTDLSLVADIDEADT----------QNGVTLMTMHSAKGLEFPIVFIMGMEESLFP 577
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
+ +E +EEERR+ YVA+TRA + L+I M+ Q PSRFLKEI
Sbjct: 578 HIRAIK---SEDDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKEI 634
Query: 936 PHHLREVQAEQSVQ 949
P L + Q Q
Sbjct: 635 PEDLLDSHTGQKRQ 648
>gi|15613211|ref|NP_241514.1| ATP-dependent DNA helicase [Bacillus halodurans C-125]
gi|10173262|dbj|BAB04367.1| ATP-dependent DNA helicase [Bacillus halodurans C-125]
Length = 747
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 224/730 (30%), Positives = 338/730 (46%), Gaps = 128/730 (17%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFT 287
K L LND+Q EA PLL++AG GSGK G++P N+LA+TFT
Sbjct: 15 KMLAGLNDRQREA-VKHTEGPLLLMAGAGSGKTRVLTHRIAYLLREKGVAPWNVLAITFT 73
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM+DR+ +VG A ++ ISTFHS +++ R +++ + F I Q
Sbjct: 74 NKAAREMKDRVAQLVG-PIADDIWISTFHSMCVRILRRDIDRIGYSRNFTILDSTDQLSV 132
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
I + +L+N I K +L T
Sbjct: 133 IKQ---ILKNNNIDSKKFEPRSILGT---------------------------------- 155
Query: 408 RDGMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
+ AK KTP +F I +E A + Y L+ ALD+ DLI + L
Sbjct: 156 ---ISGAKNELKTPEQFMGIAKGPYEETAAEVYVEYQKQLKKNQALDFDDLIMKTTSLFK 212
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADI 522
PEV + YQ ++ I+VDE+QDT+ QY L+++L H + +VGD DQSI+ + GADI
Sbjct: 213 KVPEVLEYYQRKFQYILVDEYQDTNRAQYMLVKMLGDRHKNVCVVGDSDQSIYKWRGADI 272
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
+ SF +D+ + + I L +NYRST+ I+EAA+ +I++NVKR + KN+ T+N G+KI
Sbjct: 273 ANILSFEEDYQDAEVILLEQNYRSTKTILEAANRVIENNVKR-KPKNLWTENEQGAKIGF 331
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI 642
+ E + F+++KI E +G SY IAILYR +V + + I +NI
Sbjct: 332 YKADTEQGEAQFVVEKIREAIQDG----ASYKDIAILYRTNAQSRVMEEMLIKSNIDYNI 387
Query: 643 -HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH--IDKIST 699
G FY +K ++ ++A LR DD +R+ KR I +DKI+
Sbjct: 388 VGGTKFYDRKEIKDVLAYLRLVANPDDDISLQRIINV--------PKRGIGATTVDKIAA 439
Query: 700 IRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT----- 754
+ IS +F A L + ++ +T +SKLV + +
Sbjct: 440 YAERQGIS----MFAA----------LKEIEQIGVTSRAVSKLVEFTEQLGHWVQMQEYL 485
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
SV +V + LLE+ D +L + L + Q L ++ +FLS +E
Sbjct: 486 SVTELVEE--LLERTGYRD-----MLQNEKTLEA--QSRLENIDEFLSV-----TQEFEK 531
Query: 815 DQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
D K I L + IS+ + ++V L T+H +KGLE+ IVF+ E
Sbjct: 532 SSDDKSLIAFLTD-LALISDIDKLDDEDDGAKPTDAVVLMTLHSAKGLEFPIVFLIGLEE 590
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQ 927
P +EEERRL YV +TRA K+L++ +Y +AN
Sbjct: 591 GIFPHSRSLFED-----DEMEEERRLAYVGITRAEKQLYLTSAQLRTIYGRTNAN----P 641
Query: 928 PSRFLKEIPH 937
PSRF+ EIP
Sbjct: 642 PSRFIDEIPE 651
>gi|375290478|ref|YP_005125018.1| putative ATP-dependent DNA helicase II [Corynebacterium diphtheriae
241]
gi|376245310|ref|YP_005135549.1| putative ATP-dependent DNA helicase II [Corynebacterium diphtheriae
HC01]
gi|376250916|ref|YP_005137797.1| putative ATP-dependent DNA helicase II [Corynebacterium diphtheriae
HC03]
gi|371580149|gb|AEX43816.1| putative ATP-dependent DNA helicase II [Corynebacterium diphtheriae
241]
gi|372107940|gb|AEX74001.1| putative ATP-dependent DNA helicase II [Corynebacterium diphtheriae
HC01]
gi|372112420|gb|AEX78479.1| putative ATP-dependent DNA helicase II [Corynebacterium diphtheriae
HC03]
Length = 828
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 220/752 (29%), Positives = 348/752 (46%), Gaps = 121/752 (16%)
Query: 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAA 290
+ LN QQ +AA +PLLIVAG GSGK G+ P NILA+TFT A
Sbjct: 48 EGLNPQQ-KAAVEHCGSPLLIVAGAGSGKTSVLTRRIAYLMRVRGVQPQNILAITFTNKA 106
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAII 349
A+EMR+R+ S+VG A+ + +STFHS +++ R A+ + + F IY +R +
Sbjct: 107 AAEMRERVSSLVGP-VAQRMWVSTFHSTCVRILREQAQLVPGLNTNFTIYDSDDSKRLL- 164
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++ + L +K+ + +L T +S+ K N+
Sbjct: 165 ---SMISKDFSLDIKKFTPRLLAT--------------------GISNLK----NELIDA 197
Query: 410 GMDVAKA-SGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
A A S K P E A++ Y LR+ NA+D+ DLI +V++ P V
Sbjct: 198 DQACADAESTKNPYE------TTIASVFAEYQKRLRASNAVDFDDLIGETVRIFREHPPV 251
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH----NRITIVGDDDQSIFSFNGADISG 524
+ Y+ ++ +++DE+QDT+ QY+L+ L + + +VGD DQSI++F GA I
Sbjct: 252 TEYYRRRFRHVLIDEYQDTNHAQYALIHELVGSGPDASELCVVGDSDQSIYAFRGATIRN 311
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+ F +D+ N + I L +NYRST+ I+ AA+S+I N R + K + T G I+
Sbjct: 312 IEEFERDYPNAETILLEQNYRSTQTILNAANSVIAQNENRRE-KKLWTALGSGDPIVGYV 370
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
NE + FI +++ A G +Y IA++YR S + + F IP+ +
Sbjct: 371 ADNEHDEARFIANEVDALADKG----VAYSDIAVMYRTNNSSRAVEDVFMRTGIPYKVVG 426
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFK-----------AFLLLEKEEKKRVID 692
G FY +K +R IIA LR D RR+ AFL L
Sbjct: 427 GTRFYERKEIRDIIAYLRLIDNPDDAVSLRRIINTPRRGIGDKAVAFLSL---------- 476
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRRE------ 746
H D F A D K+S R GR + + K +R E
Sbjct: 477 HADN----HNVGFHKALLDATEDKVSMLGAR-----GRNAVTGFVDMMKGIREEAANKVN 527
Query: 747 -----PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFL 801
P I +++ + ++ K LE+ D G L+ N+L SV + ++ + +
Sbjct: 528 EVTGMPDIGDMVSYILDVTGYKAELEKSN--DPQDGARLDNLNELVSVAREFSSEAANQV 585
Query: 802 STKFTAAKEEG-NVDQDKKG--CINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIH 857
+ + A+ + + + +G L AF++ +S Q DNE VTL T+H
Sbjct: 586 AYERMGAENQAPEIPELSEGEAAPGSLMAFLERVSLVADAD---QIPDNEQGVVTLMTLH 642
Query: 858 QSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV 917
+KGLE+ +VF+ + + P + A+ E + EERRL YV +TRAR+ L++
Sbjct: 643 TAKGLEFPVVFLTGWEDGQFPHLR----ALGEP-KELAEERRLAYVGITRARRTLYLSRA 697
Query: 918 MMDANWQ---LLQPSRFLKEIPHHLREVQAEQ 946
M+ ++W PSRFL EIP L + + E+
Sbjct: 698 MLRSSWGNPVTNPPSRFLSEIPDELMDWRREE 729
>gi|228476304|ref|ZP_04061005.1| ATP-dependent DNA helicase PcrA [Staphylococcus hominis SK119]
gi|228269587|gb|EEK11093.1| ATP-dependent DNA helicase PcrA [Staphylococcus hominis SK119]
Length = 730
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 212/731 (29%), Positives = 344/731 (47%), Gaps = 113/731 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ ++N +Q EA PLLI+AG GSGK +SP NILA+TFT
Sbjct: 5 VSNMNKEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAKEMKERVEHLVGEE-AQVIWMSTFHSMCVKILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I KR M G ++ L K D
Sbjct: 123 D---VLKNENI-DSKRFEPRMFV--GAISNLKNEL--------------------KTPED 156
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
M E ++ A + Y L ALD+ DLI +++L P+
Sbjct: 157 AM----------KEANDFHSQMVATVYSGYQRQLSRNEALDFDDLIMKTIRLFERVPDAL 206
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI SF
Sbjct: 207 EYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQNILSF 266
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
+D+ K I L +NYRST+ I+ AA+ +I+HN +R + K + T N+ G KI E E
Sbjct: 267 EEDYPEAKTIFLEQNYRSTKTILTAANEVIKHNTER-KPKGLWTANNGGEKIKYYEAMTE 325
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ +++ +I++H +G Y +AILYR +V + F + IP+ + G F
Sbjct: 326 RDEAEYVVREIIKHRKSGK----DYNDMAILYRTNAQSRVLEETFMKSNIPYTMVGGQKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIRKCSF 705
Y +K ++ +++ LR DD +R+ KR I +DKI +
Sbjct: 382 YDRKEIKDLLSYLRIVANSNDDISLQRIINV--------PKRGIGPSSVDKIQRYALDNN 433
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREP--SISAVITSVANMVPQK 763
IS + G K+ +TQ + + EM+ L++ + IS ++ + +
Sbjct: 434 ISMFDALGEVDFIGLSKK--VTQ--ECIQFYEMVQNLIKEQEFLEISEIVEEILEKSGYR 489
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
+LE+ ++ RS L+ ++ +F+S E + +++ IN
Sbjct: 490 QMLEREQTIES------------RSRLE----NIDEFMS---VPKDYEKDTPLEEQSLIN 530
Query: 824 VLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
L + + I E + ++ VTL T+H +KGLE+ IVF+ E+ P +
Sbjct: 531 FLTDLSLVADIDEAQI----------DSGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIR 580
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHH 938
++ +EEERR+ YVA+TRA + L+I + M+ Q PSRFLKEIP
Sbjct: 581 AIK---SDDDHEMEEERRICYVAITRAEEVLYITHATSRMLFGRSQANLPSRFLKEIPEE 637
Query: 939 LREVQAEQSVQ 949
L E A+ Q
Sbjct: 638 LLETPAKSKRQ 648
>gi|291437725|ref|ZP_06577115.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
gi|291340620|gb|EFE67576.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
Length = 835
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 210/728 (28%), Positives = 331/728 (45%), Gaps = 103/728 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LND Q AA +PLLIVAG GSGK G+ P ILA+TFT
Sbjct: 70 LEGLNDNQ-RAAVVHSGSPLLIVAGAGSGKTRVLTHRIAYLLAERGVHPGQILAITFTNK 128
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A + + TFHS +++ R ++KL TS F IY +R +
Sbjct: 129 AAGEMKERVEQLVGP-RANAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMA 187
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R L+ L KR F SF + + + +
Sbjct: 188 LVCRDLD----LDPKR---------------------------FPPKSFS-AKISNLKNE 215
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+D + + F K + A Y LR NALD+ DLI +V LL FP+V
Sbjct: 216 LVDEEDFAARAADGFEKTLAQAYAL----YQSRLREANALDFDDLIMTTVNLLRAFPDVA 271
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN----------------RITIVGDDDQS 513
+ Y+ ++ ++VDE+QDT+ QY+L++ L + + +VGD DQS
Sbjct: 272 EHYRRRFRHVLVDEYQDTNHAQYALVRELVGSSEQPVDAPGNAGETAPAELCVVGDADQS 331
Query: 514 IFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTD 573
I++F GA I F +D+ + I L +NYRST+ I+ AA+++I+ N R + KN+ T+
Sbjct: 332 IYAFRGATIRNILQFEEDYPDATTILLEQNYRSTQTILGAANAVIERNESR-RPKNLWTN 390
Query: 574 NSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
G++I E + F+ D+I G A G +A+ YR +VF+ F
Sbjct: 391 AGAGARITGYVADTEHDEAQFVADEIDRLTDAGQAKA---GDVAVFYRTNAQSRVFEEVF 447
Query: 634 RERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID 692
+P+ + GV FY +K VR ++A LR D P RR+ + ++ R
Sbjct: 448 IRVGLPYKVVGGVRFYERKEVRDVLAYLRVLANPEDSVPLRRILN---VPKRGIGDRAEA 504
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV 752
ID ++ + SF A + + G RS + ++ +E + + + V
Sbjct: 505 MIDALAQRERISFPQALGRV--DEAYGMAARS-VNAVKRFNTLMEDLRTIAESGAGPATV 561
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
+ +V YL E +A D +D LQ L A ++ +F + EG
Sbjct: 562 LEAVLERT--GYLAELQASTD-------PQDETRIENLQELAA-----VALEFEQGRGEG 607
Query: 813 NVDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAK 871
V L F++ ++ +++ + D +TL T+H +KGLE+ +VF+
Sbjct: 608 AVPPGATAPGGTLADFLEQVALVADSDQIPDEDEDGSGVITLMTLHTAKGLEFPVVFLTG 667
Query: 872 ANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQP 928
+ P + G E +EEERRL YV +TRAR++L++ M + W P
Sbjct: 668 MEDGVFPHLRAL-GQTKE----LEEERRLAYVGITRARERLYLTRSTMRSAWGQPSYNPP 722
Query: 929 SRFLKEIP 936
SRFL+EIP
Sbjct: 723 SRFLEEIP 730
>gi|425738449|ref|ZP_18856712.1| ATP-dependent DNA helicase [Staphylococcus massiliensis S46]
gi|425479681|gb|EKU46854.1| ATP-dependent DNA helicase [Staphylococcus massiliensis S46]
Length = 727
Score = 247 bits (631), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 202/725 (27%), Positives = 343/725 (47%), Gaps = 121/725 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++++N++Q +A PLLI+AG GSGK +SP NILA+TFT
Sbjct: 5 IKNMNNEQSQA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ S+VG+ A+ + +STFHS +++ R +++ F I Q+ I
Sbjct: 64 AAKEMKERVASLVGEE-AEVIWMSTFHSMCVRILRRDIDRIGFERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ ++ EK + K+ M G ++ L
Sbjct: 123 QVLK----EKNIDSKKFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILEN----YNGILRSCNALDYHDLISCSVKLLSTF 465
KTP + + ++ +++ N Y L ALD+ DLI ++KL
Sbjct: 152 ---------KTPDDASREANDYYTSMVANVYSAYQKQLLRNQALDFDDLIMTTIKLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
P+V + YQ+ ++ I VDE+QDT+ QY+L+ LA I +VGD DQSI+ + GADI
Sbjct: 203 PDVLEYYQNKFQYIHVDEYQDTNKAQYTLVNQLAKKFENICVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ N I L +NYRST+ I+ AA+ +I++N +R + K + T N+ G KI E
Sbjct: 263 ILSFEEDYPNATTIFLEQNYRSTKTILNAANEVIRNNTER-KPKGLWTGNAEGEKIQYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
+E +C +++ ++++H NG Y +AILYR +V + F + IP+ +
Sbjct: 322 ATSERDECEYVVREVMKHRKNGK----DYNDMAILYRTNAQSRVLEETFMKSNIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
G FY + ++ +++ LR DD +RR+ KR I +T+ K
Sbjct: 378 GQKFYDRMEIKDLLSYLRLIANSNDDISFRRIINV--------PKRSIGP----TTVDKI 425
Query: 704 SFISAACDI--FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREP--SISAVITSVANM 759
+ +A DI F A F + + ++I+ L++++ I+ ++ + +
Sbjct: 426 AAYAAEHDISMFDALAEIDFIGVSKKAAQACMSFYQLINDLMKQQEFLEITEIVDEILDK 485
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
+ +LE+ + + RS L+ ++ +F S E N +++
Sbjct: 486 SGYRAMLEKAQTL------------ESRSRLE----NIDEFKSVPMDY---EENTPLEEQ 526
Query: 820 GCINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
IN L + + I E T E+ VT+ T+H +KGLE+ +VF+ E+
Sbjct: 527 SLINFLTDLSLVADIDEANT----------ESGVTMMTMHSAKGLEYPVVFIIGMEESIF 576
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKE 934
P F ++ +EEERR+ YVA+TRA ++L++ + M+ Q SRFL E
Sbjct: 577 P---HFRAIKSDDDHEMEEERRIAYVAITRAEEQLYVTHATNRMLYGRTQSNMRSRFLNE 633
Query: 935 IPHHL 939
IP L
Sbjct: 634 IPEDL 638
>gi|376242438|ref|YP_005133290.1| putative ATP-dependent DNA helicase II [Corynebacterium diphtheriae
CDCE 8392]
gi|372105680|gb|AEX71742.1| putative ATP-dependent DNA helicase II [Corynebacterium diphtheriae
CDCE 8392]
Length = 828
Score = 247 bits (631), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 220/752 (29%), Positives = 348/752 (46%), Gaps = 121/752 (16%)
Query: 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAA 290
+ LN QQ +AA +PLLIVAG GSGK G+ P NILA+TFT A
Sbjct: 48 EGLNPQQ-KAAVEHYGSPLLIVAGAGSGKTSVLTRRIAYLMRVRGVQPQNILAITFTNKA 106
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAII 349
A+EMR+R+ S+VG A+ + +STFHS +++ R A+ + + F IY +R +
Sbjct: 107 AAEMRERVSSLVGP-VAQRMWVSTFHSTCVRILREQAQLVPGLNTNFTIYDSDDSKRLL- 164
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++ + L +K+ + +L T +S+ K N+
Sbjct: 165 ---SMISKDFSLDIKKFTPRLLAT--------------------GISNLK----NELIDA 197
Query: 410 GMDVAKA-SGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
A A S K P E A++ Y LR+ NA+D+ DLI +V++ P V
Sbjct: 198 DQACADAESTKNPYETTI------ASVSAEYQKRLRASNAVDFDDLIGETVRIFREHPPV 251
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH----NRITIVGDDDQSIFSFNGADISG 524
+ Y+ ++ +++DE+QDT+ QY+L+ L + + +VGD DQSI++F GA I
Sbjct: 252 TEYYRRRFRHVLIDEYQDTNHAQYALIHELVGSGPDASELCVVGDSDQSIYAFRGATIRN 311
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+ F +D+ N + I L +NYRST+ I+ AA+S+I N R + K + T G I+
Sbjct: 312 IEEFERDYPNAETILLEQNYRSTQTILNAANSVIAQNENRRE-KKLWTALGSGDPIVGYV 370
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
NE + FI +++ A G +Y IA++YR S + + F IP+ +
Sbjct: 371 ADNEHDEARFIANEVDALADKG----VAYSDIAVMYRTNNSSRAVEDVFMRTGIPYKVVG 426
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFK-----------AFLLLEKEEKKRVID 692
G FY +K +R IIA LR D RR+ AFL L
Sbjct: 427 GTRFYERKEIRDIIAYLRLIDNPDDAVSLRRIINTPRRGIGDKAVAFLSL---------- 476
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRRE------ 746
H D F A D K+S R GR + + K +R E
Sbjct: 477 HADN----HNVGFHKALLDATEDKVSMLGAR-----GRNAVTGFVDMMKGIREEAANKVN 527
Query: 747 -----PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFL 801
P I +++ + ++ K LE+ D G L+ N+L SV + ++ + +
Sbjct: 528 EVTGMPDIGDMVSYILDVTGYKAELEKSN--DPQDGARLDNLNELVSVAREFSSEAANQV 585
Query: 802 STKFTAAKEEG-NVDQDKKG--CINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIH 857
+ + A+ + + + +G L AF++ +S Q DNE VTL T+H
Sbjct: 586 AYERMGAENQAPEIPELSEGEAAPGSLMAFLERVSLVADAD---QIPDNEQGVVTLMTLH 642
Query: 858 QSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV 917
+KGLE+ +VF+ + + P + A+ E + EERRL YV +TRAR+ L++
Sbjct: 643 TAKGLEFPVVFLTGWEDGQFPHLR----ALGEP-KELAEERRLAYVGITRARRTLYLSRA 697
Query: 918 MMDANWQ---LLQPSRFLKEIPHHLREVQAEQ 946
M+ ++W PSRFL EIP L + + E+
Sbjct: 698 MLRSSWGNPVTNPPSRFLSEIPDELMDWRREE 729
>gi|342215273|ref|ZP_08707923.1| ATP-dependent DNA helicase PcrA [Veillonella sp. oral taxon 780
str. F0422]
gi|341588659|gb|EGS32044.1| ATP-dependent DNA helicase PcrA [Veillonella sp. oral taxon 780
str. F0422]
Length = 727
Score = 247 bits (631), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 227/750 (30%), Positives = 344/750 (45%), Gaps = 140/750 (18%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAAS 292
LN +Q EA PLLI+AG GSGK G+SP ILA+TFT AA
Sbjct: 5 GLNKEQQEAVYA-TEGPLLILAGAGSGKTRVLTYRIAYLLTQGVSPYEILAITFTNKAAK 63
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSE-FLIYGHGQQRRAIIEA 351
EM++R+ ++VG TA + +STFHSF + R + S+ F IY + I +A
Sbjct: 64 EMKERVETLVGD-TAHRIWLSTFHSFCAKFLRFELDSFMGYSKNFSIYDSSDSQAVIKQA 122
Query: 352 VRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
++ L ++K V + + + +D A F A F+S K+ Y
Sbjct: 123 IKALNLDDKYYPVGAMQSQI--SDAKNRMKLAKDFRSEARDFYSQQVSKVYDY------- 173
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
Y LR NALD+ DL+ +VKLL P V +
Sbjct: 174 ----------------------------YEAELRKNNALDFDDLLLVAVKLLQENPAVLE 205
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSFR 529
+Y ++ I++DE+QDT+ QY+L +LAS N + +VGD DQSI+++ GADI F
Sbjct: 206 KYSHRFRYIMIDEYQDTNHAQYTLASLLASKWNNLCVVGDVDQSIYAWRGADIQNILDFE 265
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
KD+ K I+L +NYRST+ I+EAA+++I +N R + K + TD G+KI E +E
Sbjct: 266 KDYPKAKLIKLEQNYRSTKTILEAANAVIDYNEGRPE-KVLWTDKGEGAKIHHFEAQSEQ 324
Query: 590 AQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFY 648
+ AFI D I + SYG +AILYR +V + + +R IP+ + G FY
Sbjct: 325 EEGAFIGDTIKKQKE---IHNRSYGEMAILYRTNAQSRVLEESMIKRGIPYTMVGGTKFY 381
Query: 649 RKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISA 708
+K ++ I+A LR + DD +R+ KR I ++T+ K
Sbjct: 382 DRKEIKDILAYLRILINPFDDICLQRIINV--------PKRSIG----LTTVGKLQ---- 425
Query: 709 ACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQ 768
F R + +TL + + I+++ +K LE+
Sbjct: 426 -----------DFARE---TNNSLFMTLSQLDQ-----------ISTIKGKTKEK--LEE 458
Query: 769 RAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK------GCI 822
+ F L+NE +L +Q ++ V D T + E QD+ +
Sbjct: 459 FMGLIF---TLVNEATELS--VQGIIEAVLD--RTGYVVELENSTDPQDQARLENIGELV 511
Query: 823 NVLKAFIDYISERETEHFRTQR---------HDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+V K F+D E + F Q E+ VTL T+H +KGLE+ +VF+A
Sbjct: 512 SVAKEFMDTNPEGTLQDFLEQVALVNDVDSFEQEESKVTLMTLHAAKGLEFPVVFLAGLE 571
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-----LYVMMDANWQLLQP 928
E P VEEERR+ YV +TRA ++L++ V L P
Sbjct: 572 EGLFPHSRTLMNP-----EEVEEERRIAYVGITRAEEELYVSNATTRTVFGKTTGYL--P 624
Query: 929 SRFLKEIPHHL-REVQAEQSVQDQ-HENIP 956
SRFLKEIP L EV+ +++V+++ N+P
Sbjct: 625 SRFLKEIPSELMEEVRPKRTVKEELQRNVP 654
>gi|225027982|ref|ZP_03717174.1| hypothetical protein EUBHAL_02242 [Eubacterium hallii DSM 3353]
gi|224954696|gb|EEG35905.1| putative ATP-dependent DNA helicase PcrA [Eubacterium hallii DSM
3353]
Length = 738
Score = 247 bits (630), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 212/746 (28%), Positives = 353/746 (47%), Gaps = 142/746 (19%)
Query: 247 SLNDQQLEAA-CGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAA 290
+LN++Q EA C + PLL++AG GSGK G++P NILA+TFT A
Sbjct: 6 TLNNEQREAVFCTE--GPLLMLAGAGSGKTRSLTHRIAYLIEEKGVAPWNILAITFTNKA 63
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIE 350
A EMR+R+ ++VG + +++ ISTFH+ ++ R H + L F IY Q+ + E
Sbjct: 64 AQEMRERVDALVGYGS-EDIWISTFHATCSRILRRHIDLLGYDRNFTIYDASDQKSLMKE 122
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
V+K + D F+ +++ +SS
Sbjct: 123 -----------VLKEMKID------------TKQFLERSVMS-EISS------------- 145
Query: 411 MDVAKASGKTPAEFRKIGDEIG--------AAILENYNGILRSCNALDYHDLISCSVKLL 462
AK K+P ++R +E G A I E+Y L+ NALD+ DL+ V L
Sbjct: 146 ---AKNEYKSPLDYR---NEYGSNFRNQRIADIYEHYQKRLKENNALDFDDLLVKMVDLF 199
Query: 463 STFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGAD 521
T P+V + YQD ++ I+VDE+QDT+ +Q+ L+ +LA R + +VGDDDQSI+ F GA+
Sbjct: 200 QTNPDVLEHYQDRFQYIMVDEYQDTNTVQFLLVSLLAKKYRNLCVVGDDDQSIYKFRGAN 259
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII 581
I +F K F + + IRL +NYRST+ I+ AA+ +I +N R + K + T+N G +
Sbjct: 260 IYNILNFEKVFPDAQVIRLEQNYRSTQNILNAANGVIANNKGRKE-KKLWTENQKGELVH 318
Query: 582 IKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN 641
K+ E + ++ +I A G Y +AILYR ++F+ +++ IP+
Sbjct: 319 FKQYDTEYDEADGVVSRINFLAMRG----VQYKDMAILYRTNAQSRIFEEKLKQKNIPYA 374
Query: 642 I-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTI 700
I G++FY +K ++ +++ L+ G DD +R+ + ++ + I+ + + + +
Sbjct: 375 IVRGISFYDRKEIKDLMSYLKVVDSGMDDLSVKRIIN---VPKRGIGQTTINRLQEFAIL 431
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRR------EPSISAVIT 754
+ SF+ A F ++ + + L L + ++ E IS ++
Sbjct: 432 NQMSFLDA-----------VFNADEIPEVTRALAKLHKFADMIEEFREYASEHEISELLE 480
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNED-----NDLRSVLQYLL-ADVTDFLSTKFTAA 808
+ ++ + LE D +L ED ND+ + ++ DFL+ K
Sbjct: 481 HILDVTQYRAELEAEG-TDESISRL--EDIEELFNDIAYYEEEEENPNLRDFLAEK---- 533
Query: 809 KEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVF 868
+ L A ID + D N V L T+H +KGLE++ VF
Sbjct: 534 ------------DMYTLNAGIDNL------------EDENNKVLLMTLHNAKGLEFNNVF 569
Query: 869 VAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQL 925
+ E P F ++ + +EEERRL YV +TRA+++LF+ M+ Q
Sbjct: 570 LGGMEEGVFP---GFGAMMSGDESEIEEERRLCYVGITRAKERLFLSAAKRRMLRGQTQY 626
Query: 926 LQPSRFLKEIPHHLREVQAEQSVQDQ 951
+ SRF+ EIP + EQ V +Q
Sbjct: 627 NRRSRFIDEIPGQY--LDTEQRVSEQ 650
>gi|297583056|ref|YP_003698836.1| ATP-dependent DNA helicase PcrA [Bacillus selenitireducens MLS10]
gi|297141513|gb|ADH98270.1| ATP-dependent DNA helicase PcrA [Bacillus selenitireducens MLS10]
Length = 773
Score = 247 bits (630), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 223/754 (29%), Positives = 356/754 (47%), Gaps = 114/754 (15%)
Query: 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAA 290
+ LN +Q EA + PLLI+AG GSGK G+ +ILA+TFT A
Sbjct: 33 EGLNKEQQEAVVHN-EGPLLIMAGAGSGKTRVLTNRIAYLIGEKGVPHWSILAITFTNKA 91
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIE 350
A EM+DR+ VG A+E+ ISTFHS +++ R +++ F I
Sbjct: 92 AREMKDRVKKNVG-YEAEEMWISTFHSMCVRILRRDIDRIGYNRNFTI------------ 138
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
L ++++ V+KRI + F RA L M+++ ++
Sbjct: 139 ---LDASDQLTVIKRIIKEKNIDKKKFD-PRAILGMISSA-----------------KNE 177
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
+ AK KT A + +++ + + E Y L+ ALD+ DLI +++L + P+V +
Sbjct: 178 LKTAKDFDKTAAGYF---EQVASTVYEQYERELKRNQALDFDDLIMTTIRLFNQVPDVLE 234
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFR 529
YQ ++ I+VDE+QDT+ QY L+++LA H + +VGD DQSI+ + GADI+ SF
Sbjct: 235 YYQRRFRYIMVDEYQDTNHAQYRLVRLLADRHKNLCVVGDSDQSIYRWRGADIANILSFE 294
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
KD+ + K I L +NYRST+ I++AA+ +I HN R KN+ T+N G KI NE
Sbjct: 295 KDYPDAKVILLEQNYRSTKRILDAANRVISHNSGRKD-KNLWTNNDGGEKITYYSARNEH 353
Query: 590 AQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVAFY 648
+ AFI+D+I + S S IAILYR +V + F + + + I G FY
Sbjct: 354 DEAAFIVDEIQKKLS---GSELKASDIAILYRTNAQSRVLEELFVKSNMAYTIVGGTKFY 410
Query: 649 RKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISA 708
+K ++ ++A LR DD +RR+ + ++ +D + + S A
Sbjct: 411 DRKEIKDLLAYLRLVANPDDDISFRRIVN---VPKRGIGPTTVDKLQAYADRNDLSLFQA 467
Query: 709 ACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQ 768
+I +S F + ++R + + + VP K L+++
Sbjct: 468 VAEIEQVGLSARF------------------TNMLRTFHDQLSGWIQMQDYVPVKELVDE 509
Query: 769 RAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN--VL 825
++D G + +L +N L S + L ++ +FL+ EE + D+ + L
Sbjct: 510 --LLDQTGYREMLENENTLES--EGRLENIEEFLTV--AGEFEEASDDKTLIAFLTDLAL 563
Query: 826 KAFIDYI-SERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFN 884
A ID + E E EH V + T+H +KGLE+ +VF+A E P +
Sbjct: 564 IADIDKVDEEEEAEH-----------VLMMTLHSAKGLEFPVVFLAGLEEGVFP-----H 607
Query: 885 GAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD---ANWQLLQPSRFLKEIPHHLRE 941
+ +EEERRL YV +TRA K+L++ M + PSRFL EIP L
Sbjct: 608 SCSLMEEAEMEEERRLAYVGITRAEKELYLTRASMRTIFGKTNMNAPSRFLSEIPDELLA 667
Query: 942 ----VQAEQSVQDQHENI-PEGTAQFTINLPREE 970
Q + S D+ + P G++ +N P E
Sbjct: 668 ETGLSQGKTSAADELPWMQPSGSSNRPVNRPAPE 701
>gi|420181994|ref|ZP_14688137.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM049]
gi|394250667|gb|EJD95846.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
NIHLM049]
Length = 729
Score = 247 bits (630), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 217/735 (29%), Positives = 347/735 (47%), Gaps = 121/735 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++++N +Q EA PLLI+AG GSGK +SP NILA+TFT
Sbjct: 5 VKNMNSEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ ++I
Sbjct: 64 AAKEMKARVEHLVGEE-AQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQK-SVI 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ V EN + KR M G ++ L
Sbjct: 122 KDVLKSEN---IDSKRFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP + +K + ++ A + + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PE + YQ+ ++ I VDE+QDT+ QY+L+++LA+ + +VGD DQSI+ + GADI
Sbjct: 203 PETLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ K I L +NYRST+ I+ AA+ +I+HN +R + K + T NS G KI E
Sbjct: 263 ILSFEEDYPEAKTIFLEQNYRSTKNILNAANEVIKHNSER-KPKGLWTANSGGDKIQYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++H +G Y +AILYR +V + F + IP+ +
Sbjct: 322 AMTERDEAEYVVKEIMKHQRSGK----KYSEMAILYRTNAQSRVLEETFMKSNIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R KR I ++KI T
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRNINV--------PKRGIGPSSVEKIQTYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREP--SISAVITSVANM 759
+ IS + G K+ +TQ + + EMI L++ + IS ++ V
Sbjct: 430 LQNNISMFDALAEVDFIGLSKK--VTQ--ECISFYEMIQNLIKEQEFLEISEIVDEV--- 482
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
L++ D +L+ + + S + L ++ +F+S E N +++
Sbjct: 483 ------LQKSGYRD-----MLDREQSIES--RSRLENLDEFMS---VPKDYEENTPLEEQ 526
Query: 820 GCINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
IN L + + I E +T +N VTL T+H +KGLE+ IVF+ E+
Sbjct: 527 SLINFLTDLSLVADIDEADT----------QNGVTLMTMHSAKGLEFPIVFIMGMEESLF 576
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKE 934
P + +E +EEERR+ YVA+TRA + L+I M+ Q PSRFLKE
Sbjct: 577 PHIRAIK---SEDDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKE 633
Query: 935 IPHHLREVQAEQSVQ 949
IP L + Q Q
Sbjct: 634 IPEDLLDSHTGQKRQ 648
>gi|225012823|ref|ZP_03703257.1| UvrD/REP helicase [Flavobacteria bacterium MS024-2A]
gi|225003097|gb|EEG41073.1| UvrD/REP helicase [Flavobacteria bacterium MS024-2A]
Length = 775
Score = 247 bits (630), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 220/734 (29%), Positives = 346/734 (47%), Gaps = 104/734 (14%)
Query: 237 MPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNIL 282
M + Y+ SLN+ Q PL+++AG GSGK G+ +IL
Sbjct: 1 MEKQQGGYIDSLNEAQ-RGPVLHKEGPLIVIAGAGSGKTRVLTYRIAHLMASGVDSFSIL 59
Query: 283 AMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHG 342
A+TFT AA EM+ RIG++VG+ AK L + TFHS ++ R A+KL S F IY
Sbjct: 60 ALTFTNKAAREMKARIGALVGEGEAKNLWMGTFHSVFARILRQEADKLGFPSNFTIYDTQ 119
Query: 343 QQRRAIIEAVRLLENEK-ILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
R I ++ + +K I K++ + + SL + A +F+ +
Sbjct: 120 DSDRLISSIIKEMGLDKDIYKYKQVRS-------RISAFKNSLITVKA--YFNDLDLQ-- 168
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
E D M K P ++G+ I + Y A+D+ DL+ + +L
Sbjct: 169 -----ESDTM------SKRP----QMGE-----IYKEYVARCFKAGAMDFDDLLLRTNEL 208
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGA 520
L+ +PEV +YQD ++ I+VDE+QDT+ QY +++ L+ + I +VGDD QSI++F GA
Sbjct: 209 LNRYPEVLAKYQDRFRYILVDEYQDTNHSQYLIVRALSDRYQNICVVGDDAQSIYAFRGA 268
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
+I+ +F+KD+ RL +NYRST+ IV AA+S+I HN + K V T N+ G I
Sbjct: 269 NINNILNFQKDYDGVALYRLEQNYRSTKTIVNAANSIISHNKTKID-KVVWTSNTEGESI 327
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
+ + + I I + + AILYR + + A R+R IP+
Sbjct: 328 QVNRLATDAEEGRHIASSIFDFKMQEQRKNADF---AILYRTNAQSRAMEDALRKRDIPY 384
Query: 641 NIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDK--- 696
I+ G++FY++K ++ I+A LR + D+ E KR+I++ +
Sbjct: 385 RIYGGLSFYQRKEIKDILAYLRILVNPKDE---------------ESLKRIINYPPRGIG 429
Query: 697 ISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITS- 755
+T+ K S D+ + K QL LL L S L++R + + +
Sbjct: 430 QTTVDKLVVASKHHDLPFFETIVKAKELQLPLNAGTLLKLSEFSTLIQRFQIENETLNAF 489
Query: 756 -VANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
V ++V +K L Q D + +N ++ LL + D FT +EE
Sbjct: 490 EVTDLVTKKIGLVQELKKDATPEGIARIEN-----IEELLNGIRD-----FTEGQEEL-- 537
Query: 815 DQDKKGCINVLKAFIDYISERETEHFRTQRHDNENS--VTLTTIHQSKGLEWDIVFVAKA 872
D G L F++ ++ + D+ NS V L TIH +KGLE+ VF+
Sbjct: 538 -ADANGS---LSEFLEDVALATD----LDKDDDPNSDRVALMTIHLAKGLEFPYVFIVGL 589
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPS 929
E P N T +EEERRL YVA+TRA ++ F+ Y + W L +PS
Sbjct: 590 EEDLFPSAMSLNTR-----TELEEERRLFYVALTRAEERAFLSYTLSRYRWGKLIDAEPS 644
Query: 930 RFLKEI-PHHLREV 942
RF++EI P +L +V
Sbjct: 645 RFIEEIDPQYLNKV 658
>gi|314936042|ref|ZP_07843391.1| ATP-dependent DNA helicase PcrA [Staphylococcus hominis subsp.
hominis C80]
gi|418618793|ref|ZP_13181648.1| ATP-dependent DNA helicase PcrA [Staphylococcus hominis VCU122]
gi|313655859|gb|EFS19602.1| ATP-dependent DNA helicase PcrA [Staphylococcus hominis subsp.
hominis C80]
gi|374826672|gb|EHR90559.1| ATP-dependent DNA helicase PcrA [Staphylococcus hominis VCU122]
Length = 730
Score = 247 bits (630), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 212/731 (29%), Positives = 344/731 (47%), Gaps = 113/731 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ ++N +Q EA PLLI+AG GSGK +SP NILA+TFT
Sbjct: 5 VSNMNKEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAKEMKERVEHLVGEE-AQVIWMSTFHSMCVKILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I KR M G ++ L K D
Sbjct: 123 D---VLKNENI-DSKRFEPRMFV--GAISNLKNEL--------------------KTPED 156
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
M E ++ A + Y L ALD+ DLI +++L P+
Sbjct: 157 AM----------KEANDFHSQMVATVYSGYQRQLSRNEALDFDDLIMKTIRLFERVPDAL 206
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI SF
Sbjct: 207 EYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQNILSF 266
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
+D+ K I L +NYRST+ I+ AA+ +I+HN +R + K + T N+ G KI E E
Sbjct: 267 EEDYPEAKTIFLEQNYRSTKTILTAANEVIKHNTER-KPKGLWTANNGGEKIKYYEAMTE 325
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ +++ +I++H +G Y +AILYR +V + F + IP+ + G F
Sbjct: 326 RDEAEYVVREIIKHRKSGK----DYNDMAILYRTNAQSRVLEETFMKSNIPYTMVGGQKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIRKCSF 705
Y +K ++ +++ LR DD +R+ KR I +DKI +
Sbjct: 382 YDRKEIKDLLSYLRIVANSNDDISLQRIINV--------PKRGIGPSSVDKIQRYALDNN 433
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREP--SISAVITSVANMVPQK 763
IS + G K+ +TQ + + EM+ L++ + IS ++ + +
Sbjct: 434 ISMFDALGEVDFIGLSKK--VTQ--ECIQFYEMVQNLIKEQEFLEISEIVEEILEKSGYR 489
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
+LE+ ++ RS L+ ++ +F+S E + +++ IN
Sbjct: 490 QMLEREQTIES------------RSRLE----NIDEFMS---VPKDYEKDTPLEEQSLIN 530
Query: 824 VLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
L + + I E + ++ VTL T+H +KGLE+ IVF+ E+ P +
Sbjct: 531 FLTDLSLVADIDEAQI----------DSGVTLMTMHSAKGLEFPIVFLMGMEESLFPHIR 580
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHH 938
++ +EEERR+ YVA+TRA + L+I + M+ Q PSRFLKEIP
Sbjct: 581 AIK---SDDDHEMEEERRICYVAITRAEEVLYITHATSRMLFGRSQANLPSRFLKEIPEE 637
Query: 939 LREVQAEQSVQ 949
L E A+ Q
Sbjct: 638 LLETPAKSKRQ 648
>gi|326800328|ref|YP_004318147.1| UvrD/REP helicase [Sphingobacterium sp. 21]
gi|326551092|gb|ADZ79477.1| UvrD/REP helicase [Sphingobacterium sp. 21]
Length = 761
Score = 247 bits (630), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 219/735 (29%), Positives = 333/735 (45%), Gaps = 133/735 (18%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
YLQ LN Q AA P++IVAG GSGK GI P NIL +TFT
Sbjct: 3 YLQGLNPSQ-RAAVEQTDGPVMIVAGAGSGKTRVITYRVAHLIQKGIDPFNILVLTFTNK 61
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+RI +VG AK + + TFHS ++ R A + + F IY + I
Sbjct: 62 AAKEMRERIMKVVGN-EAKNIWMGTFHSVFAKILRVEAHHIGYPANFTIYDTDDSKSLIR 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++K + D + +F Y R S N + +Y K
Sbjct: 121 S-----------ILKEMQLDDKLYNANFVYNRISAAKNNLI--------SAAEYQK---- 157
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ + AE + G I + Y+ A+D+ DL+ + LL+ PEV
Sbjct: 158 -------NAQIQAEDQSGGRGNLGQIYQTYSQRCYKAGAMDFDDLLFKTNVLLNQHPEVL 210
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDSF 528
+YQ +K ++VDE+QDT+ QY +++ LA+ N I +VGDD QSI++F GA+I +F
Sbjct: 211 YKYQTKFKYLMVDEYQDTNFSQYLIVKRLAAINENICVVGDDAQSIYAFRGANIQNILNF 270
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + K +L +NYRST+ IV AA+S+I +N + + KNV ++N G KI + ++
Sbjct: 271 EKDYPDLKVFKLEQNYRSTQNIVNAANSIISNNKNQLK-KNVFSENETGDKIKVVRAFSD 329
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAF 647
+ + + + IL+ S + AILYR + + A R+ IP+ I+ G +F
Sbjct: 330 NEEGKMVAENILQDRS---LQSLRFKDFAILYRTNAQSRAMEEALRKLNIPYKIYGGTSF 386
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y++K ++ +IA R T D+ E KRVI++ + I
Sbjct: 387 YQRKEIKDLIAYFRLTFNPNDE---------------EALKRVINYPRRGIGDTSVERIF 431
Query: 708 AACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLE 767
A D + + SI VIT+ PQ+YL
Sbjct: 432 IAAD--------------------------------QHQKSIWEVITT-----PQQYLDG 454
Query: 768 QRAVVDFDGGKL------LNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKG 820
+ A V + G L L ++N + +A + L + EG N ++ +
Sbjct: 455 RTAAVVYPFGSLIQSFQVLAKNNSAYDTALH-IAQHSGILKDLYEDKSVEGLNRYENIQE 513
Query: 821 CINVLKAFIDY--ISERETEHFR----------TQRHDNENSVTLTTIHQSKGLEWDIVF 868
+N +K F + I+E+ + F ++ N ++V+L TIH SKGLE+ VF
Sbjct: 514 LLNGIKEFSEREDIAEKGLDVFMQDIALLTNDDNDKNPNADTVSLMTIHSSKGLEFPQVF 573
Query: 869 VAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-- 926
+ E P N T +EEERRL YVA+TRA KKL + Y W L
Sbjct: 574 IVGLEENLFPSQLALNSR-----TELEEERRLFYVAITRAEKKLTLSYATSRYRWGTLNN 628
Query: 927 -QPSRFLKEI-PHHL 939
+PSRF+ EI P +L
Sbjct: 629 CEPSRFIDEIDPRYL 643
>gi|379737569|ref|YP_005331075.1| ATP-dependent DNA helicase pcrA [Blastococcus saxobsidens DD2]
gi|378785376|emb|CCG05049.1| ATP-dependent DNA helicase pcrA [Blastococcus saxobsidens DD2]
Length = 769
Score = 246 bits (629), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 222/757 (29%), Positives = 341/757 (45%), Gaps = 128/757 (16%)
Query: 219 MKSSMEKTDTIQTIKTQNMPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---- 274
++ S+ T + ++ E + L LN Q +A + S PLLIVAG GSGK
Sbjct: 4 LQQSLPGTAALPRSAPGSLGRELDRMLAGLNGPQRDAVVHEGS-PLLIVAGAGSGKTRVL 62
Query: 275 -----------GISPSNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLC 323
G+ P ILA+TFT AA EM++R+ ++VG A+ + +STFHS +++
Sbjct: 63 THRIAYLLGARGVQPGEILAITFTNKAAGEMKERVAALVGP-RARSMWVSTFHSMCVRIL 121
Query: 324 RSHAEKLERTSEFLIYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRAS 383
R+ A KL S F IY G R + R L+ L KR L
Sbjct: 122 RAEAAKLGMKSSFTIYDQGDSIRLMTMVARDLD----LHAKRFPGRSLAN---------- 167
Query: 384 LFMMNAMLFFSMSSFKLCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGIL 443
Q + + + +D S +TP E R + D A L Y L
Sbjct: 168 ------------------QVSNLKNELVDEDAFSPQTPPE-RVLKD---AYTL--YQRRL 203
Query: 444 RSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS--- 500
R +A+D+ DLI +V LL FP+V + Y+ ++ ++VDE+QDT+ QY L++ L
Sbjct: 204 REAHAMDFDDLIMTTVHLLQAFPDVAEHYRRRFRHVLVDEYQDTNHAQYMLVRELTGTGE 263
Query: 501 ----HNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASS 556
+ +VGD DQSI++F GA I D F +D+ I L +NYRST+ I++AA+
Sbjct: 264 GPVPQAELCVVGDADQSIYAFRGATIRNIDEFERDYPQATTILLEQNYRSTQRILKAANQ 323
Query: 557 LIQHNVKRCQLKNVQTDNSHGSKI---IIKECHNEDAQCAFIIDKILEHASNGPASICSY 613
+I N R + KN+ TD+ G I + H+E A A ID +++ + PA
Sbjct: 324 VISKNTGR-RPKNLWTDSGDGELIEGYVADNEHDEAAWVAEQIDALVDEGTARPA----- 377
Query: 614 GSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPY 672
IA+ YR + +VF+ F +P+ + GV FY +K VR +A L+ D
Sbjct: 378 -DIAVFYRTNNASRVFEEVFIRVGMPYKVVGGVRFYERKEVRDALAYLKLVANPADVVSL 436
Query: 673 RRVFKAFLLLEKEEKKRVIDH----IDKISTIRKCSFISAA--CDIFGAKISGTFKRSQL 726
RR+ K+ + D I+ + + +F +A C A++ RS L
Sbjct: 437 RRIINV-------PKRGIGDKAESCIESFADRERIAFGTALRRC----AEVPDLATRS-L 484
Query: 727 TQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDL 786
++ + LE +LV +A++ S+ + YL E +A D ++ N+L
Sbjct: 485 KALQEFVSLLEEFEQLVETGSGPAALLESILDRT--GYLAELQASTDPQDEGRVDNLNEL 542
Query: 787 RSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYIS----ERETEHFRT 842
SV + +F AA G V F++ +S +
Sbjct: 543 ISV------------AAEFEAASPGGTVTD-----------FLEQVSLVADADQIPGPGG 579
Query: 843 QRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLY 902
D VTL T+H +KGLE+ +VFV + P + +EEERRL Y
Sbjct: 580 PGEDTAGVVTLMTLHTAKGLEFPVVFVTGMEDGVFPHLRALGDP-----RELEEERRLAY 634
Query: 903 VAMTRARKKLFILYVMMDANW---QLLQPSRFLKEIP 936
V +TRAR++LFI + +W PSRFL E+P
Sbjct: 635 VGITRARQRLFISRATVRTSWGQPAYNPPSRFLDELP 671
>gi|227504218|ref|ZP_03934267.1| ATP-dependent DNA helicase [Corynebacterium striatum ATCC 6940]
gi|227199173|gb|EEI79221.1| ATP-dependent DNA helicase [Corynebacterium striatum ATCC 6940]
Length = 869
Score = 246 bits (629), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 204/737 (27%), Positives = 357/737 (48%), Gaps = 90/737 (12%)
Query: 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAA 290
+ LN QQ+EA +PLLIVAG GSGK G++P ILA+TFT A
Sbjct: 76 EGLNPQQIEAVT-HAGSPLLIVAGAGSGKTAVLTRRIAYLMRNRGVAPWEILAITFTNKA 134
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAII 349
A+EM++R+G +VG A+ + +STFHS +++ R +A+ + + F IY RR +
Sbjct: 135 AAEMKERVGQLVGP-VAERMWVSTFHSICVRILRQNAQLVPGLNTNFTIYDGDDARRLLT 193
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++ + L +K+ + +L +S+ K N+
Sbjct: 194 ----MIAKDMQLDLKKYTARVLAN--------------------QISNHK----NELVSP 225
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+A+A KT F D A + + Y LR+ N++D+ DLI V++ + P+V
Sbjct: 226 DYALAEAE-KTKNPF----DITVARVFDEYQRRLRAANSVDFDDLIGEVVRIFNQHPQVV 280
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRIT-------IVGDDDQSIFSFNGADI 522
Y+ +K +++DE+QDT+ QY+L+ L + +VGD DQSI++F GA I
Sbjct: 281 DFYRRRFKHVLIDEYQDTNHAQYALVSALVGRGELGPDAPELCVVGDSDQSIYAFRGATI 340
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
F +D+ I L +NYRST+ I+ AA+++I N R + KN+ T + G+KI+
Sbjct: 341 RNIQEFERDYPQAHTILLEQNYRSTQTILNAANAVIAKNEGRRE-KNLWTAHGEGAKIVG 399
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN- 641
NE + FI +I + G Y IAI+YR + + + F IP+
Sbjct: 400 YVADNEHDEARFIASEIDSLSDKG----RDYSDIAIMYRTNNASRALEDIFVRSGIPYKV 455
Query: 642 IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAF-LLLEKEEKKRVIDHIDKIS-T 699
+ G FY ++ +R ++A LR D RR+ + + + ++ H + + +
Sbjct: 456 VGGTRFYERREIRDMVAYLRIIDNPDDTVSLRRIINVPKRAIGDKAQAQIALHAENLGIS 515
Query: 700 IRKCSFISAACDIFGA---KISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSV 756
K + +AA ++ G ++ K +++ +G + + ++ V +P + ++++V
Sbjct: 516 FGKALYDAAAGNVAGLGTRAVNSVSKFNEMMEG--IRAQIPGMTNEVTHQPDLGELLSAV 573
Query: 757 ANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVD- 815
+ + LE D G L+ N+L SV + ++ + L+ FT A E ++
Sbjct: 574 LDATGYRAELENSN--DPQDGARLDNLNELVSVAREFSSEAANQLA--FTGADVENDISP 629
Query: 816 --QDKKGCINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIHQSKGLEWDIVFVAKA 872
+ + L+AF++ +S Q DNE+ VTL T+H +KGLE+ +VF+
Sbjct: 630 ELAEGEALPGSLQAFLEKVSLVADAD---QIPDNESGVVTLMTLHTAKGLEFPVVFLTGW 686
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW--QLLQP-S 929
+ + P + + EERRL YV +TRAR++L+ ++ ++W + P S
Sbjct: 687 EDGQFPHMRSLGDP-----KELSEERRLAYVGITRAREQLYFTRAILRSSWGNPMTNPAS 741
Query: 930 RFLKEIPHHLREVQAEQ 946
RFL E+P L + + E+
Sbjct: 742 RFLAEVPEDLIDWRREE 758
>gi|419860419|ref|ZP_14383060.1| putative ATP-dependent DNA helicase II [Corynebacterium diphtheriae
bv. intermedius str. NCTC 5011]
gi|387982813|gb|EIK56312.1| putative ATP-dependent DNA helicase II [Corynebacterium diphtheriae
bv. intermedius str. NCTC 5011]
Length = 828
Score = 246 bits (629), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 219/752 (29%), Positives = 348/752 (46%), Gaps = 121/752 (16%)
Query: 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAA 290
+ LN QQ +AA +PLLIVAG GSGK G+ P NILA+TFT A
Sbjct: 48 EGLNPQQ-KAAVEHCGSPLLIVAGAGSGKTSVLTRRIAYLMRVRGVQPQNILAITFTNKA 106
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAII 349
A+EMR+R+ ++VG A+ + +STFHS +++ R A+ + + F IY +R +
Sbjct: 107 AAEMRERVSALVGP-VAQRMWVSTFHSTCVRILREQAQLVPGLNTNFTIYDSDDSKRLL- 164
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++ + L +K+ + +L T +S+ K N+
Sbjct: 165 ---SMISKDFSLDIKKFTPRLLAT--------------------GISNLK----NELIDA 197
Query: 410 GMDVAKA-SGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
A A S K P E A++ Y LR+ NA+D+ DLI +V++ P V
Sbjct: 198 DQACADAESTKNPYE------TTIASVFAEYQKRLRASNAVDFDDLIGETVRIFREHPPV 251
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH----NRITIVGDDDQSIFSFNGADISG 524
+ Y+ ++ +++DE+QDT+ QY+L+ L + + +VGD DQSI++F GA I
Sbjct: 252 TEYYRRRFRHVLIDEYQDTNHAQYALIHELVGSGSDASELCVVGDSDQSIYAFRGATIRN 311
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+ F +D+ N + I L +NYRST+ I+ AA+S+I N R + K + T G I+
Sbjct: 312 IEEFERDYPNAETILLEQNYRSTQTILNAANSVIAQNENRRE-KKLWTALGSGDPIVGYV 370
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
NE + FI +++ A G +Y IA++YR S + + F IP+ +
Sbjct: 371 ADNEHDEARFIANEVDALADKG----VAYSDIAVMYRTNNSSRAVEDVFMRTGIPYKVVG 426
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFK-----------AFLLLEKEEKKRVID 692
G FY +K +R IIA LR D RR+ AFL L
Sbjct: 427 GTRFYERKEIRDIIAYLRLIDNPDDAVSLRRIINTPRRGIGDKAVAFLSL---------- 476
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRRE------ 746
H D F A D K+S R GR + + K +R E
Sbjct: 477 HADN----HNVGFHKALLDATEDKVSMLGAR-----GRNAVTGFVDMMKGIREEAANKVN 527
Query: 747 -----PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFL 801
P I +++ + ++ K LE+ D G L+ N+L SV + ++ + +
Sbjct: 528 EVTGMPDIGDMVSYILDVTGYKAELEKSN--DPQDGARLDNLNELVSVAREFSSEAANQV 585
Query: 802 STKFTAAKEEG-NVDQDKKG--CINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIH 857
+ + A+ + + + +G L AF++ +S Q DNE VTL T+H
Sbjct: 586 AYERMGAENQAPEIPELSEGEAAPGSLMAFLERVSLVADAD---QIPDNEQGVVTLMTLH 642
Query: 858 QSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV 917
+KGLE+ +VF+ + + P + A+ E + EERRL YV +TRAR+ L++
Sbjct: 643 TAKGLEFPVVFLTGWEDGQFPHLR----ALGEP-KELAEERRLAYVGITRARRTLYLSRA 697
Query: 918 MMDANWQ---LLQPSRFLKEIPHHLREVQAEQ 946
M+ ++W PSRFL EIP L + + E+
Sbjct: 698 MLRSSWGNPVTNPPSRFLSEIPDELMDWRREE 729
>gi|453052154|gb|EME99642.1| ATP-dependent DNA helicase II [Streptomyces mobaraensis NBRC 13819
= DSM 40847]
Length = 822
Score = 246 bits (629), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 218/732 (29%), Positives = 331/732 (45%), Gaps = 126/732 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ +NDQQ AA +PLLIVAG GSGK G+ P ILA+TFT
Sbjct: 66 LEGMNDQQ-RAAVVHSGSPLLIVAGAGSGKTRVLTHRIAHLLGARGVHPGQILAITFTNK 124
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A + + TFHS +++ R ++KL TS F IY +R +
Sbjct: 125 AAGEMKERVEQLVGP-RANAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMA 183
Query: 350 EAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
R L+ + K K S + + N ++ +F + FE
Sbjct: 184 LVCRDLDLDPKKFPPKSFSAKISN-------------LKNELV--DEEAFAAQAADGFE- 227
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
KT AE + Y LR NALD+ D+I +V LL FP+V
Sbjct: 228 ----------KTLAEAYAM-----------YQSRLREANALDFDDIIMTTVHLLQAFPDV 266
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILA---------SHNRITIVGDDDQSIFSFNG 519
+ Y+ ++ ++VDE+QDT+ QY+L++ L + +VGD DQSI++F G
Sbjct: 267 AEHYRRRFRHVLVDEYQDTNHAQYTLIRELVGTPATAGEEGPGELCVVGDADQSIYAFRG 326
Query: 520 ADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSK 579
A I F +D+ + I L +NYRST+ I+ AA+++I+ N R + KN+ T+ GS
Sbjct: 327 ATIRNILQFEEDYPDATTILLEQNYRSTQTILSAANAVIERNENR-RPKNLWTEAGAGSA 385
Query: 580 IIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIP 639
I E + F+ D+I G A G +A+ YR +VF+ F +P
Sbjct: 386 ITGYVADTEHDEAQFVADEIDRLTDAGDAKA---GDVAVFYRTNAQSRVFEEIFIRVGLP 442
Query: 640 FN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIS 698
+ + GV FY +K VR ++A LR D P RR+ + ++ +R ID +S
Sbjct: 443 YKVVGGVRFYERKEVRDVLAYLRVLANPEDTVPLRRILN---VPKRGIGERAEAMIDALS 499
Query: 699 TIRKCSFISA---ACDIFG--AKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI 753
K SF A D +G A+ + KR + ++ + +V + V+
Sbjct: 500 LREKISFAQALRRVDDAYGMAARSANAVKRFN--------VLMDELRTIVESGAGPATVL 551
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
+V YL E +A D +D LQ L A +F E
Sbjct: 552 EAVLERT--GYLAELQASTD-------PQDETRIENLQELAAVALEF----------EQE 592
Query: 814 VDQDKKGCIN------VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIV 867
+D+ G + L A D I + +TE +TL T+H +KGLE+ +V
Sbjct: 593 RTEDEPGTLAEFLEKVALVADSDQIPDEDTE--------GTGVITLMTLHTAKGLEFPVV 644
Query: 868 FVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---Q 924
F+ + P + G E +EEERRL YV +TRAR++L++ M + W
Sbjct: 645 FLTGMEDGVFPHMRAL-GQTKE----LEEERRLAYVGITRARERLYLTRSSMRSAWGQPA 699
Query: 925 LLQPSRFLKEIP 936
PSRFL+EIP
Sbjct: 700 YNPPSRFLEEIP 711
>gi|376287318|ref|YP_005159884.1| putative ATP-dependent DNA helicase II [Corynebacterium diphtheriae
BH8]
gi|371584652|gb|AEX48317.1| putative ATP-dependent DNA helicase II [Corynebacterium diphtheriae
BH8]
Length = 828
Score = 246 bits (629), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 220/752 (29%), Positives = 348/752 (46%), Gaps = 121/752 (16%)
Query: 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAA 290
+ LN QQ +AA +PLLIVAG GSGK G+ P NILA+TFT A
Sbjct: 48 EGLNPQQ-KAAVEHCGSPLLIVAGAGSGKTSVLTRRIAYLMRVRGVQPQNILAITFTNKA 106
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAII 349
A+EMR+R+ S+VG A+ + +STFHS +++ R A+ + + F IY +R +
Sbjct: 107 AAEMRERVSSLVGP-VAQCMWVSTFHSTCVRILREQAQLVPGLNTNFTIYDSDDSKRLL- 164
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++ + L +K+ + +L T +S+ K N+
Sbjct: 165 ---SMISKDFSLDIKKFTPRLLAT--------------------GISNLK----NELIDA 197
Query: 410 GMDVAKA-SGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
A A S K P E A++ Y LR+ NA+D+ DLI +V++ P V
Sbjct: 198 DQACADAESTKNPYE------TTIASVFAEYQKRLRASNAVDFDDLIGETVRIFREHPPV 251
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH----NRITIVGDDDQSIFSFNGADISG 524
+ Y+ ++ +++DE+QDT+ QY+L+ L + + +VGD DQSI++F GA I
Sbjct: 252 TEYYRRRFRHVLIDEYQDTNHAQYALIHELVGSGPDASELCVVGDSDQSIYAFRGATIRN 311
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+ F +D+ N + I L +NYRST+ I+ AA+S+I N R + K + T G I+
Sbjct: 312 IEEFERDYPNAETILLEQNYRSTQTILNAANSVIAQNENRRE-KKLWTALGSGDPIVGYV 370
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
NE + FI +++ A G +Y IA++YR S + + F IP+ +
Sbjct: 371 ADNEHDEARFIANEVDALADKG----VAYSDIAVMYRTNNSSRAVEDVFMRTGIPYKVVG 426
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFK-----------AFLLLEKEEKKRVID 692
G FY +K +R IIA LR D RR+ AFL L
Sbjct: 427 GTRFYERKEIRDIIAYLRLIDNPDDAVSLRRIINTPRRGIGDKAVAFLSL---------- 476
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRRE------ 746
H D F A D K+S R GR + + K +R E
Sbjct: 477 HADN----HNVGFHKALLDATEDKVSMLGAR-----GRNAVTGFVDMMKGIREEAANKVN 527
Query: 747 -----PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFL 801
P I +++ + ++ K LE+ D G L+ N+L SV + ++ + +
Sbjct: 528 EVTGMPDIGDMVSYILDVTGYKAELEKSN--DPQDGARLDNLNELVSVAREFSSEAANQV 585
Query: 802 STKFTAAKEEG-NVDQDKKG--CINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIH 857
+ + A+ + + + +G L AF++ +S Q DNE VTL T+H
Sbjct: 586 AYERMGAENQAPEIPELSEGEAAPGSLMAFLERVSLVADAD---QIPDNEQGVVTLMTLH 642
Query: 858 QSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV 917
+KGLE+ +VF+ + + P + A+ E + EERRL YV +TRAR+ L++
Sbjct: 643 TAKGLEFPVVFLTGWEDGQFPHLR----ALGEP-KELAEERRLAYVGITRARRTLYLSRA 697
Query: 918 MMDANWQ---LLQPSRFLKEIPHHLREVQAEQ 946
M+ ++W PSRFL EIP L + + E+
Sbjct: 698 MLRSSWGNPVTNPPSRFLSEIPDELMDWRREE 729
>gi|409196815|ref|ZP_11225478.1| ATP-dependent DNA helicase [Marinilabilia salmonicolor JCM 21150]
Length = 767
Score = 246 bits (629), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 216/739 (29%), Positives = 341/739 (46%), Gaps = 123/739 (16%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
YLQ LN+ Q +A + P L++AG GSGK G++P ++LA+TFT
Sbjct: 4 YLQQLNEAQHKAVI-NTEGPSLVIAGAGSGKTRVLTYRIAYLLEKGVAPWSVLALTFTNK 62
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++RIG IVG+ TA +L + TFHS ++ R +EKL S F IY + I
Sbjct: 63 AAREMKNRIGQIVGQETASKLWMGTFHSVFAKILRIESEKLGYPSTFSIYDTTDSKSLIN 122
Query: 350 EAVR--LLENEKIL----VVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQY 403
++ L EK V+ RIS N ++ ++ +
Sbjct: 123 SILKELGLNKEKAYRPGAVLGRISA-----------------AKNDLIIPAVYA------ 159
Query: 404 NKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
+R D A + P I + Y R A+D+ DL+ + L
Sbjct: 160 KDPQRTSADAAARMFRMP------------EIYQRYMRECRKAGAMDFDDLLLNTNILFR 207
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADI 522
PE+ ++YQ+ ++ I+VDE+QDT+ QY + + LA H I +VGDD QSI+SF GA I
Sbjct: 208 DNPEILEKYQNRFQYILVDEYQDTNFSQYLITRKLAEKHKNICVVGDDAQSIYSFRGAKI 267
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
+FR D+ Y+ +L +NYRST+ IV AA+S+I HN K+ + K V + N G KI +
Sbjct: 268 ENILNFRNDYQGYQLFKLEQNYRSTQNIVNAANSIIAHNEKQIK-KEVYSQNDEGQKINM 326
Query: 583 KECHNEDAQCAFII-----DKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERK 637
+ + D FI+ D L H S Y AILYR ++F+ A R++
Sbjct: 327 FQAQS-DVDEGFIVINDINDNRLRHQS-------QYEDFAILYRTNAQSRIFEEALRKKN 378
Query: 638 IPFNIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDK 696
IP+ I+ G++FY++K ++ ++A LR T+ D +RV + K ++ I+
Sbjct: 379 IPYKIYGGLSFYQRKEIKDLLAYLRITVNPRDSEALKRVIN---YPARGIGKTTMEKIEN 435
Query: 697 ISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSV 756
+++ S + + G TL+ +S R IS ++
Sbjct: 436 LASQNNLSLWEVITN-------PALPNTGFNSG-----TLKKLSSFARL---ISGFMSQA 480
Query: 757 ANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVT-------DFLSTKFTAAK 809
NM FD L NE +++ L + + + L F A +
Sbjct: 481 PNMSA------------FD---LTNEIATQSGIMKELHQEKSHENQTRIENLEELFNAIR 525
Query: 810 EEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFV 869
E + Q+ G N L F++ +S + + D+ N VTL TIH +KGLE+ V++
Sbjct: 526 EFSDERQE-SGENNSLVDFLEEVSLLTDQD--NDKPDDLNKVTLMTIHTAKGLEFKNVYI 582
Query: 870 AKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL--- 926
E P + + + +EEERRL YVA+TRA +++ + + + L
Sbjct: 583 VGVEEGLFP-----SSMASATESGIEEERRLFYVALTRAEERVTLTFARNRYKYGELTFA 637
Query: 927 QPSRFLKEIPHHLREVQAE 945
+PSRFL EI + +E
Sbjct: 638 RPSRFLGEINQEYLNIPSE 656
>gi|453074222|ref|ZP_21977016.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus triatomae BKS 15-14]
gi|452764628|gb|EME22894.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus triatomae BKS 15-14]
Length = 818
Score = 246 bits (628), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 221/754 (29%), Positives = 343/754 (45%), Gaps = 129/754 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN QQ EA +PLLIVAG GSGK ++P +LA+TFT
Sbjct: 20 LDGLNPQQHEAVV-HTGSPLLIVAGAGSGKTAVLTRRIAYLLAERDVNPGQVLAITFTNK 78
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EMR+R+ +VG A + +STFHS +++ R A L S F IY RR +
Sbjct: 79 AAAEMRERVAQLVGP-RANSMWVSTFHSTCVRILRMQAALLPGLNSNFTIYDADDSRRLL 137
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
+ LE ++ K+ S +L T+ +S+ K N+
Sbjct: 138 TMISKDLEIDQ----KKYSARLLATN--------------------ISNLK----NELIG 169
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
A A +T R + A + +Y LR+ NALD+ DLI +V LL P+V
Sbjct: 170 PEEAAANADRETNEVVRLV-----AQVYGHYQARLRAANALDFDDLIGETVALLQQHPQV 224
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-------NRITIVGDDDQSIFSFNGAD 521
+ Y+ ++ ++VDE+QDT+ QY L+ L + + +VGD DQSI++F GA
Sbjct: 225 AEYYRRRFRHVLVDEYQDTNHAQYVLVNTLVGQEGDAVPPSELCVVGDADQSIYAFRGAT 284
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII 581
I + F +D+ + I L +NYRST+ I+ AA+S+I N R K + T + G I+
Sbjct: 285 IRNIEEFERDYPQARTILLEQNYRSTQNILSAANSVISRNTGRRD-KKLWTASGEGDLIV 343
Query: 582 IKECHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKI 638
NE + +F+ ID++++ A +G +A+ YR S + + F +
Sbjct: 344 GYVADNEHDEASFVASEIDRLVD------AGDAKFGDVAVFYRTNNSSRALEEVFIRLGL 397
Query: 639 PFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKI 697
P+ + GV FY +K VR I+A LR D RR+ ++ + D +
Sbjct: 398 PYKVVGGVRFYERKEVRDIVAYLRVLANPDDTVSLRRILNT-------PRRGIGDRAEAC 450
Query: 698 STI----RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKL-VRREPSISAV 752
+ R F +A D +++ RSQ + EM+ +L +P + +
Sbjct: 451 VAVHAEQRGIGFAAALRDAADGRVALLNTRSQ----NAIAAFTEMMDELRAGMQPDDTGL 506
Query: 753 --ITSVANMV--PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAA 808
I VA V +Y E A D G L+ N+L SV + +F S AA
Sbjct: 507 IDIGDVAEAVLDRTRYRAELEASSDPQDGARLDNLNELVSVAR-------EFSSDARNAA 559
Query: 809 KEEGNVDQ-----------------DKKGCINVLKAFIDYISERETEHFRTQRHDNENS- 850
+ ++D+ D + L AF++ +S Q DN +
Sbjct: 560 GLDTDIDEALEGALAAAGEDDPALGDGEPDPGSLAAFLERVSLVADSD---QLPDNGDGV 616
Query: 851 VTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARK 910
VTL T+H +KGLE+ +VFV + + P + + EERRL YV +TRAR+
Sbjct: 617 VTLMTLHTAKGLEFPVVFVTGWEDGQFPHMRALG-----DPAELSEERRLAYVGITRARQ 671
Query: 911 KLFILYVMMDANWQLLQP-----SRFLKEIPHHL 939
+L++ ++ + W QP SRFL+EIP HL
Sbjct: 672 RLYVTRAVLRSAWG--QPITNPESRFLQEIPQHL 703
>gi|375292692|ref|YP_005127231.1| putative ATP-dependent DNA helicase II [Corynebacterium diphtheriae
INCA 402]
gi|371582363|gb|AEX46029.1| putative ATP-dependent DNA helicase II [Corynebacterium diphtheriae
INCA 402]
Length = 828
Score = 246 bits (628), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 219/752 (29%), Positives = 347/752 (46%), Gaps = 121/752 (16%)
Query: 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAA 290
+ LN QQ +AA +PLLIVAG GSGK G+ P NILA+TFT A
Sbjct: 48 EGLNPQQ-KAAVEHYGSPLLIVAGAGSGKTSVLTRRIAYLMRVRGVQPQNILAITFTNKA 106
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAII 349
A+EMR+R+ S+VG + + +STFHS +++ R A+ + + F IY +R +
Sbjct: 107 AAEMRERVSSLVGPVDQR-MWVSTFHSTCVRILREQAQLVPGLNTNFTIYDSDDSKRLL- 164
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++ + L +K+ + +L T +S+ K N+
Sbjct: 165 ---SMISKDFSLDIKKFTPRLLAT--------------------GISNLK----NELIDA 197
Query: 410 GMDVAKA-SGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
A A S K P E A++ Y LR+ NA+D+ DLI +V++ P V
Sbjct: 198 DQACADAESTKNPYE------TTIASVFAEYQKRLRASNAVDFDDLIGETVRIFREHPPV 251
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH----NRITIVGDDDQSIFSFNGADISG 524
+ Y+ ++ +++DE+QDT+ QY+L+ L + + +VGD DQSI++F GA I
Sbjct: 252 TEYYRRRFRHVLIDEYQDTNHAQYALIHELVGSGPDASELCVVGDSDQSIYAFRGATIRN 311
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+ F +D+ N + I L +NYRST+ I+ AA+S+I N R + K + T G I+
Sbjct: 312 IEEFERDYPNAETILLEQNYRSTQTILNAANSVIAQNENRRE-KKLWTALGSGDPIVGYV 370
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
NE + FI +++ A G +Y IA++YR S + + F IP+ +
Sbjct: 371 ADNEHDEARFIANEVDALADKG----VAYSDIAVMYRTNNSSRAVEDVFMRTGIPYKVVG 426
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFK-----------AFLLLEKEEKKRVID 692
G FY +K +R IIA LR D RR+ AFL L
Sbjct: 427 GTRFYERKEIRDIIAYLRLIDNPDDAVSLRRIINTPRRGIGDKAVAFLSL---------- 476
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRRE------ 746
H D F A D K+S R GR + + K +R E
Sbjct: 477 HADN----HNVGFHKALLDATEDKVSMLGAR-----GRNAVTGFVDMMKGIREEAANKVN 527
Query: 747 -----PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFL 801
P I +++ + ++ K LE+ D G L+ N+L SV + ++ + +
Sbjct: 528 EVTGMPDIGDMVSYILDVTGYKAELEKSN--DPQDGARLDNLNELVSVAREFSSEAANQV 585
Query: 802 STKFTAAKEEG-NVDQDKKG--CINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIH 857
+ + A+ + + + +G L AF++ +S Q DNE VTL T+H
Sbjct: 586 AYERMGAENQAPEIPELSEGEAAPGSLMAFLERVSLVADAD---QIPDNEQGVVTLMTLH 642
Query: 858 QSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV 917
+KGLE+ +VF+ + + P + A+ E + EERRL YV +TRAR+ L++
Sbjct: 643 TAKGLEFPVVFLTGWEDGQFPHLR----ALGEP-KELAEERRLAYVGITRARRTLYLSRA 697
Query: 918 MMDANWQ---LLQPSRFLKEIPHHLREVQAEQ 946
M+ ++W PSRFL EIP L + + E+
Sbjct: 698 MLRSSWGNPVTNPPSRFLSEIPDELMDWRREE 729
>gi|387907246|ref|YP_006337582.1| ATP-dependent DNA helicase [Blattabacterium sp. (Blaberus
giganteus)]
gi|387582139|gb|AFJ90917.1| ATP-dependent DNA helicase [Blattabacterium sp. (Blaberus
giganteus)]
Length = 708
Score = 246 bits (628), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 213/728 (29%), Positives = 332/728 (45%), Gaps = 125/728 (17%)
Query: 245 LQSLNDQQ---LEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTF 286
+ SLN+ Q +E G P+L++AG GSGK GISPSNILA+TF
Sbjct: 1 MNSLNNSQRKIIEIIKG----PILVIAGAGSGKTRVITHRIVHMIQNIGISPSNILALTF 56
Query: 287 TTAAASEMRDRIGSIV-GKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQR 345
T AA EM+DRI +++ + ++T+ TFHS + R + L S + IY H
Sbjct: 57 TKKAAKEMKDRISNMMMNQINFDQITLGTFHSIFSSILRKESHWLGLKSNYTIYDHKDSE 116
Query: 346 RAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNK 405
I + ++ E L K I + + Y + NK
Sbjct: 117 NIIKKILKDFETNLSLNYKEIRIKISQYKNNLYYFK----------------------NK 154
Query: 406 FERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSC---NALDYHDLISCSVKLL 462
F+ +D F KI Y ++ C N+LD+ D++ + L
Sbjct: 155 FQNKKLDF----------FTKI-----------YKSYIKRCFQANSLDFDDILLYTNHLF 193
Query: 463 STFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGAD 521
S FP V ++YQ +K I++DE+QDT+ QY++++ L S H + +VGDD QSI+SF GA+
Sbjct: 194 SYFPNVLEKYQKKFKYILIDEYQDTNLSQYTIIKNLVSQHKNLFVVGDDAQSIYSFRGAN 253
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII 581
IS +F D+ N K RL +NYRST IV+A++++I N K K + T+N G KI
Sbjct: 254 ISNILNFHLDYKNAKIFRLEQNYRSTNHIVQASNNIISFN-KNQIFKKIWTNNEKGEKIR 312
Query: 582 IKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN 641
I +E + +I IL S + Y + AILYR + + + ++ IP+N
Sbjct: 313 IYCASSELEEAQYIASSIL---SIKKKTNLRYENFAILYRSNRQSHIIEYSLKKNNIPYN 369
Query: 642 IHG-VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTI 700
I+G ++ +K +R +A LR + D+ R+ K + ++ K ++ KI I
Sbjct: 370 IYGSISLENRKEIRYFLAYLRIIVNPNDEESLLRIVKK---VNQKIVKNILSLSKKIKGI 426
Query: 701 RKCSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANM 759
I + + KIS + + + ++LT+E + V ++ + ++A
Sbjct: 427 TVYKIIKNVENYQYLLKISN----KTINRLKNLILTIEKLRINVEQDHA-----YTIAKN 477
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
V L E DF QY+L ++ + K + N D
Sbjct: 478 VENFLLKENYNHEDF----------------QYILDHTFQYVQEQ---KKLKNNGDTSLF 518
Query: 820 GCINVLKAFI-DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
G + I D I+ E ++ N V+L T+H SKGLE+ IVF+ E P
Sbjct: 519 GFLRFFYLEINDDINHEENKN---------NKVSLMTVHLSKGLEFSIVFIVGLEENLFP 569
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSRFLKEI 935
L +F E +EEERRL YVA+TRA+KK + Y W + PSRF+ E+
Sbjct: 570 LKSDF-----ENQFKIEEERRLFYVALTRAQKKAVLTYAKYRFIWGKKKENVPSRFINEL 624
Query: 936 PHHLREVQ 943
+ E Q
Sbjct: 625 NKNFVENQ 632
>gi|374673130|dbj|BAL51021.1| ATP-dependent helicase PcrA [Lactococcus lactis subsp. lactis IO-1]
Length = 758
Score = 246 bits (628), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 216/732 (29%), Positives = 348/732 (47%), Gaps = 118/732 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
LQ +N++Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LQGMNEKQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R S+ +A ++ I+TFHS +++ R A+ + F I G Q+ +
Sbjct: 64 AAKEMRERALSLTPRA--QDTLIATFHSMCVRILRRDADHIGYNRNFTIIDPGDQKSLM- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++IL + G ++NA+ S + L + +E
Sbjct: 121 --------KRILKEANLDPKKWEPKG----------LLNAI---SNAKNDLLDESAYE-- 157
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
A+ S + P E + A + + Y LR ++D+ DLI +++L P+V
Sbjct: 158 ----AQTSARHPYEM------VVARVYKIYQKELRKAESMDFDDLIMQTLRLFDENPDVL 207
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 208 SYYQGKFQYIHVDEYQDTNHAQYQLVKLLASRFQNICVVGDADQSIYGWRGADMQNILDF 267
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+++I++N+KR + K + T N G KI+ NE
Sbjct: 268 EKDYPKAKVVLLEENYRSTKTILDAANNVIKNNLKR-RPKELWTQNDAGDKIVYFRAGNE 326
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ +K+ E ++G S SY A+LYR + + +F + IP+ + G F
Sbjct: 327 QEEA----NKVSEIITSGVRSGRSYADYAVLYRTNAQSRTIEDSFVKSNIPYTMVAGTKF 382
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIRKC 703
Y +K +R +IA L D+ + R+ E K+ V ++ + + + R
Sbjct: 383 YSRKEIRDVIAYLNVVANPADNMSFERIV-------NEPKRGVGPGALEKLRRFADSRGL 435
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
S ++ DI + I G + + L M L+R S + V M
Sbjct: 436 SLADSSFDIMLSDIRG--------KAAGEIYNLAMAFDLLRTHSESSTITELVEEM---- 483
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLS-TKFTAAKEEGNVDQDK---- 818
LE+ V K L + + Q + ++ +FLS TK K E +D++
Sbjct: 484 --LERTGYV-----KALQMMPSIEN--QARIENIEEFLSVTKGFDEKSEIPLDEETGEPI 534
Query: 819 -KGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
+ ++ L F++ +S ET+ + + + VT+ T+H +KGLE+ IVF+ E
Sbjct: 535 IETGLDKLSRFLNEVSLLSETDAY----EEESDQVTMMTLHAAKGLEFPIVFLIGMEENI 590
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPS 929
PL VNE +EEERRL YV +TRA + L+ +M+AN ++L +PS
Sbjct: 591 FPLSR-----VNEDIDELEEERRLAYVGITRAEETLY----LMNANQRVLYGKTNYNRPS 641
Query: 930 RFLKEIPHHLRE 941
RF+ EI L E
Sbjct: 642 RFISEIDDELLE 653
>gi|298208568|ref|YP_003716747.1| helicase [Croceibacter atlanticus HTCC2559]
gi|83848491|gb|EAP86360.1| putative helicase [Croceibacter atlanticus HTCC2559]
Length = 773
Score = 246 bits (628), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 212/713 (29%), Positives = 339/713 (47%), Gaps = 92/713 (12%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
YL+ LND Q A ++++AG GSGK G+ P NIL++TFT
Sbjct: 4 YLKGLNDAQ-RAPVLQKDGAMIVIAGAGSGKTRVLTMRIAHLMKNGVDPFNILSLTFTNK 62
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ RI IVG + AK L + TFHS ++ R A+KL S F IY Q +++I
Sbjct: 63 AAKEMKKRISEIVGASEAKNLWMGTFHSIFAKILRFEADKLGYPSNFTIY-DTQDSQSLI 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
A ++K + D Y R S + N+++ ++ ++ F+
Sbjct: 122 RA----------IIKEMHLDKDVYKYKQVYSRISSY-KNSLI--TVKAY-------FQNP 161
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ A A K P ++GD I + Y A+D+ DL+ + +LL+ FPEV
Sbjct: 162 ELIEADAMAKRP----RLGD-----IYKEYVERCFKAGAMDFDDLLLRTNELLNRFPEVL 212
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
+YQ+ +K I+VDE+QDT+ QY +++ L+ I +VGDD QSI++F GA+I+ +F
Sbjct: 213 NKYQNRFKYILVDEYQDTNHSQYLIVRALSDKFQNICVVGDDAQSIYAFRGANINNILNF 272
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
++D+ N + RL +NYRST+ IV AA+S+I N + K V T N G KI + N+
Sbjct: 273 QRDYDNVEMYRLEQNYRSTKNIVNAANSIIDKNKTKLD-KVVWTANDEGPKIRVNRLIND 331
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAF 647
+ F+ I E N G AILYR + + A R++ IP+ I+ G++F
Sbjct: 332 GEEGRFVASSIFE---NKMEHQLRNGQFAILYRTNAQSRAMEDALRKKDIPYRIYGGLSF 388
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y++K ++ +I+ LR D+ +RV + + ID + + K S
Sbjct: 389 YQRKEIKDVISYLRLIANPNDEEALKRVIN---YPTRGIGQTTIDKVAIAANHYKRSMFE 445
Query: 708 AACDIFGAKIS-GTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLL 766
+I I T +++L ++ ++++K + SVA V +K L
Sbjct: 446 VMANIDKVDIGVNTGTKNKLKNFVNMIHHFQILNK--------ESDAFSVAEAVAKKTGL 497
Query: 767 EQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVD-QDKKGCINVL 825
Q D + +N ++ LL + DF+ EG V+ D G +
Sbjct: 498 IQDLKKDGTPEGVARIEN-----VEELLNGIKDFV---------EGQVELADATGSLAEF 543
Query: 826 KAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNG 885
I ++ + E +++ V L TIH +KGLE+ V++ E P N
Sbjct: 544 LEDIALATDMDKE------VGDDDRVALMTIHLAKGLEFPYVYIVGMEEDLFPSAMSMNT 597
Query: 886 AVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEI 935
+ +EEERRL YVA+TRA K+ ++ Y W L +PSRF++EI
Sbjct: 598 R-----SELEEERRLFYVALTRAEKQAYLTYTQSRYRWGKLIDAEPSRFIEEI 645
>gi|125624253|ref|YP_001032736.1| ATP-dependent DNA helicase [Lactococcus lactis subsp. cremoris
MG1363]
gi|389854612|ref|YP_006356856.1| ATP-dependent DNA helicase [Lactococcus lactis subsp. cremoris
NZ9000]
gi|124493061|emb|CAL98025.1| ATP-dependent DNA helicase [Lactococcus lactis subsp. cremoris
MG1363]
gi|300071034|gb|ADJ60434.1| ATP-dependent DNA helicase [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 758
Score = 246 bits (628), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 211/730 (28%), Positives = 347/730 (47%), Gaps = 118/730 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
LQ +N++Q +A PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LQGMNEKQAQA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R S+ +A ++ I+TFHS +++ R A+ + F I G Q+ +
Sbjct: 64 AAKEMRERALSLTPRA--QDTLIATFHSMCVRILRRDADHIGYNRNFTIIDPGDQKSLM- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++IL + G ++NA+ S + L +E
Sbjct: 121 --------KRILKEANLDPKKWEPKG----------LLNAI---SNAKNDLLDETAYE-- 157
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
A+ + + P E + A + + Y LR ++D+ DLI +++L P+V
Sbjct: 158 ----AQITARHPYEM------VVARVYKIYQKELRKAESMDFDDLIMQTLRLFDENPDVL 207
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 208 AYYQGKFQYIHVDEYQDTNHAQYQLVKLLASRFQNICVVGDADQSIYGWRGADMQNILDF 267
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+++I++N+KR + K + T N G KI+ NE
Sbjct: 268 EKDYPKAKVVLLEENYRSTKTILDAANNVIKNNLKR-RPKELWTQNDEGDKIVYFRAGNE 326
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ +K+ E S+G S SY A+LYR + + +F + IP+ + G F
Sbjct: 327 QEEA----NKVSEIISSGVRSGRSYADYAVLYRTNAQSRTIEDSFVKSNIPYTMVAGTKF 382
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKK----RVIDHIDKISTIRKC 703
Y +K +R +IA L D+ + R+ E K+ R ++ + + + R
Sbjct: 383 YSRKEIRDVIAYLNVVANPADNMSFERIV-------NEPKRGVGPRALEKLRRFAESRNL 435
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
S ++ DI + I G + + L M L+R S + V M+ +
Sbjct: 436 SLADSSFDIMLSDIRG--------KAAGEIYNLAMAFDLLRTHSESSTITELVEEMLERT 487
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLS-TKFTAAKEEGNVDQDK---- 818
L+ + + + +N R + ++ +FLS TK K E +D++
Sbjct: 488 GYLKALQL-------MPSIENQAR------IENIEEFLSVTKGFDEKSEVPLDEETGEPI 534
Query: 819 -KGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
+ ++ L F++ +S ET+ + + + VT+ T+H +KGLE+ IVF+ E
Sbjct: 535 IETGLDKLSRFLNEVSLLSETDAY----EEESDQVTMMTLHAAKGLEFPIVFLIGMEENI 590
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPS 929
PL VNE +EEERRL YV +TRA + L+ +M+AN ++L +PS
Sbjct: 591 FPLSR-----VNEDIDELEEERRLAYVGITRAEETLY----LMNANQRVLYGKTSYNRPS 641
Query: 930 RFLKEIPHHL 939
RF+ EI L
Sbjct: 642 RFISEIDDEL 651
>gi|357042364|ref|ZP_09104070.1| hypothetical protein HMPREF9138_00542 [Prevotella histicola F0411]
gi|355369823|gb|EHG17214.1| hypothetical protein HMPREF9138_00542 [Prevotella histicola F0411]
Length = 855
Score = 246 bits (628), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 214/726 (29%), Positives = 335/726 (46%), Gaps = 111/726 (15%)
Query: 245 LQSLNDQQLEAA--CGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTT 288
L +LND Q EA C + P L+VAG GSGK G+ P NILA+TFT
Sbjct: 15 LAALNDSQREAVEYC---TGPSLVVAGAGSGKTRVLTYKIAYLLNKGLKPWNILALTFTN 71
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA EM++RI I + A+ L + TFHS ++ R E + S F IY R +
Sbjct: 72 KAAREMKERIAMITSSSDARRLYMGTFHSIFARILRQEGELIGFGSNFTIYDEADSRSLL 131
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
+++L E+ + Y AS+ + SM+ L +++
Sbjct: 132 KNIIKVLGLEEKV-----------------YKPASVHNI-----ISMAKNHLITASEYAE 169
Query: 409 DGMDVAK-ASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
D + + S + PA I + Y R NA+D+ D++ + L E
Sbjct: 170 DRSAIERDRSIRMPAIH---------MIYKAYEERCRQANAMDFDDILLYTYTLFRDHKE 220
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFD 526
V ++Y ++ I VDE+QDT+ Q S++ LA H+RI +VGDD QSI+SF GA+I
Sbjct: 221 VKEKYAQLFEYIFVDEYQDTNYAQVSIISQLAELHHRICVVGDDYQSIYSFRGANIDNIL 280
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
F+ F + + +L RNYRST+ IVEAA+SL++HN ++ K+V + G K++ K C+
Sbjct: 281 DFKNKFEDARTFKLERNYRSTQLIVEAANSLMKHNERQIP-KDVYSKEDEGDKVLYKPCY 339
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
++ + + IL N C + S AILYR + F+ FR++ IP+ I G+
Sbjct: 340 SDKEEAMVVAKDILRIKRNDK---CDFSSFAILYRTNAQSRPFEDEFRKQGIPYKIIGGL 396
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH--IDKISTIRKC 703
+FY++K ++ IIA R D+ +RR+ R I I KI +
Sbjct: 397 SFYQRKEIKDIIAYFRLVSNPNDEEAFRRIINY--------PTRGIGSTTIQKIIDCAQE 448
Query: 704 SFISAACDIFGAKISG-TFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
+ +S I G + +T K+ +I+ +++ ++ A
Sbjct: 449 NNVSLWQIIINPTQYGLNVNKGTMT---KLFDFCSLITGFIKKVTTVDAFQLG------- 498
Query: 763 KYLLEQRAVVDFDGG----KLLNEDNDL--RSVLQYLLADVTDFLSTKFTAAKEEGNVDQ 816
R ++D G + ++ DL R L+ L+ + DF+ T KEEG +
Sbjct: 499 ------REIIDLSGMMAEIQTGSDPEDLVRRENLEEFLSSIQDFVET----GKEEGREE- 547
Query: 817 DKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
N+ DY+ E + D+ VTL TIH +KGLE+ VFV E
Sbjct: 548 ------NIF--LTDYLQEVVLYTDADKVDDDVPKVTLMTIHAAKGLEFPTVFVVGLEENI 599
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSRFLK 933
P + ++ +EEERRLLYVA+TRA++ + + +Q PSRFL+
Sbjct: 600 FP-----SPMSSDSKRGIEEERRLLYVAITRAKRHCILTNAKSRFRYGSMQFDNPSRFLR 654
Query: 934 EIPHHL 939
+I L
Sbjct: 655 DIDPSL 660
>gi|281491616|ref|YP_003353596.1| ATP-dependent DNA helicase II [Lactococcus lactis subsp. lactis
KF147]
gi|281375334|gb|ADA64847.1| ATP-dependent DNA helicase II [Lactococcus lactis subsp. lactis
KF147]
Length = 758
Score = 246 bits (628), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 216/732 (29%), Positives = 348/732 (47%), Gaps = 118/732 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
LQ +N++Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LQGMNEKQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R S+ +A ++ I+TFHS +++ R A+ + F I G Q+ +
Sbjct: 64 AAKEMRERALSLTPRA--QDTLIATFHSMCVRILRRDADHIGYNRNFTIIDPGDQKSLM- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++IL + G ++NA+ S + L + +E
Sbjct: 121 --------KRILKEANLDPKKWEPKG----------LLNAI---SNAKNDLLDESAYE-- 157
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
A+ S + P E + A + + Y LR ++D+ DLI +++L P+V
Sbjct: 158 ----AQTSARHPYEM------VVARVYKIYQKELRKAESMDFDDLIMQTLRLFDENPDVL 207
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 208 SYYQGKFQYIHVDEYQDTNHAQYQLVKLLASRFQNICVVGDADQSIYGWRGADMQNILDF 267
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+++I++N+KR + K + T N G KI+ NE
Sbjct: 268 EKDYPKTKVVLLEENYRSTKTILDAANNVIKNNLKR-RPKELWTQNDAGDKIVYFRAGNE 326
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ +K+ E ++G S SY A+LYR + + +F + IP+ + G F
Sbjct: 327 QEEA----NKVSEIITSGIRSGRSYADYAVLYRTNAQSRTIEDSFVKSNIPYTMVAGTKF 382
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIRKC 703
Y +K +R +IA L D+ + R+ E K+ V ++ + + + R
Sbjct: 383 YSRKEIRDVIAYLNVVANPADNMSFERIV-------NEPKRGVGPGALEKLRRFADSRGL 435
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
S ++ DI + I G + + L M L+R S + V M
Sbjct: 436 SLADSSFDIMLSDIRG--------KAAGEIYNLAMAFDLLRTHSESSTITELVEEM---- 483
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLS-TKFTAAKEEGNVDQDK---- 818
LE+ V K L + + Q + ++ +FLS TK K E +D++
Sbjct: 484 --LERTGYV-----KALQMMPSIEN--QARIENIEEFLSVTKGFDEKSEIPLDEETGEPI 534
Query: 819 -KGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
+ ++ L F++ +S ET+ + + + VT+ T+H +KGLE+ IVF+ E
Sbjct: 535 VETGLDKLSRFLNEVSLLSETDAY----EEESDQVTMMTLHAAKGLEFPIVFLIGMEENI 590
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPS 929
PL VNE +EEERRL YV +TRA + L+ +M+AN ++L +PS
Sbjct: 591 FPLSR-----VNEDIDELEEERRLAYVGITRAEETLY----LMNANQRVLYGKTNYNRPS 641
Query: 930 RFLKEIPHHLRE 941
RF+ EI L E
Sbjct: 642 RFISEIDDELLE 653
>gi|335429814|ref|ZP_08556712.1| ATP-dependent DNA helicase [Haloplasma contractile SSD-17B]
gi|334889824|gb|EGM28109.1| ATP-dependent DNA helicase [Haloplasma contractile SSD-17B]
Length = 739
Score = 246 bits (628), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 219/732 (29%), Positives = 345/732 (47%), Gaps = 110/732 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
LQ+LN QQ+EA P+L++AG GSGK ISP +ILA+TFT
Sbjct: 5 LQTLNKQQVEA-VKHYRGPMLVMAGAGSGKTKVLTNRIAYLISEKEISPYSILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ R+ VG AK++ ISTFHS LQ+ R + L + F+I
Sbjct: 64 AAKEMKHRVIKQVG-PNAKDMWISTFHSMCLQILRQDIDILGYNNNFII----------- 111
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
L + + V+K++ ++ Y + S + A + QY K
Sbjct: 112 ----LDDKDSTSVIKKVMKELNIDSKRNSYKKISAVISAAKNDYIFPE----QYKK---- 159
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
K EF + + A+I E Y L+ +A+D+ DLI ++KL E+
Sbjct: 160 ---------KASDEF----ETMVASIYERYQRYLQKSSAVDFDDLIMLTIKLFERDEEIL 206
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ ++ ++VDE+QDT+ Q+ L+++LA H+ I +VGD DQSI+S+ GADI F
Sbjct: 207 KYYQQKFQFVLVDEYQDTNKSQFRLVRLLAKKHHNIFVVGDTDQSIYSWRGADIRNIQQF 266
Query: 529 RKDF----LNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRC-QLKNVQTDNSHGSKIIIK 583
DF L K + L +NYRS + I+ AA+ +I+HN K K + +D G KI+
Sbjct: 267 ETDFKNDNLEPKVVYLEQNYRSFQNILSAANDVIKHNTKHTSHTKQLWSDKGDGDKIVYY 326
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH 643
+ D + FI +I A+ C A+LYR + F I ++I+
Sbjct: 327 RANTSDEEADFIAKEI---ATLVKIHKCKLSDFAVLYRTNSLSLALEKTFNRFNIDYHIY 383
Query: 644 G-VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRK 702
G V F+ ++ ++ + A LR + DD Y RV + ++ K ++ ++ +
Sbjct: 384 GNVGFFSRREIKDLTAYLRLIVNPDDDVSYARVVN---MPKRGIGKTTLEKLESYANDHN 440
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI--TSVANMV 760
S AA ++ + +S T R++L + ++ + + + + + I V+ + M+
Sbjct: 441 LSLYLAAKEV--STLSVTM-RNRLGEFNDLIEYMRSVIEDMELDDLIDLVLVKSGYRQML 497
Query: 761 PQKYLLEQRAVVD-FDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
++ E R +D K L D L + TDF S K G D+DK
Sbjct: 498 EEEGTDEARDRLDNLKEFKTLTVD----------LEEKTDFASIK-------GLTDEDKF 540
Query: 820 GCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
+N L + + ET+H + + NSV + TIH +KGLE+ VFV E PL
Sbjct: 541 SKMNKLNIMLSQYT-LETDHKKAK----PNSVKMMTIHAAKGLEFPYVFVYGLEENLFPL 595
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQPSRFL 932
G VN +EEERRL+YVA+TRA KKL++ Y M +N + SRF+
Sbjct: 596 -----GRVNTDPLELEEERRLMYVAITRAEKKLYLSSSFFRKQYGQMKSN----EESRFI 646
Query: 933 KEIPHHLREVQA 944
EI +L E++
Sbjct: 647 DEITENLLELKG 658
>gi|15673102|ref|NP_267276.1| ATP-dependent helicase PcrA [Lactococcus lactis subsp. lactis
Il1403]
gi|385830661|ref|YP_005868474.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Lactococcus
lactis subsp. lactis CV56]
gi|418038875|ref|ZP_12677190.1| Hydrolase acting on acid anhydrides in phosphorous-containing
anhydrides [Lactococcus lactis subsp. cremoris CNCM
I-1631]
gi|12724080|gb|AAK05218.1|AE006344_7 ATP-dependent helicase PcrA [Lactococcus lactis subsp. lactis
Il1403]
gi|326406669|gb|ADZ63740.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Lactococcus
lactis subsp. lactis CV56]
gi|354692731|gb|EHE92539.1| Hydrolase acting on acid anhydrides in phosphorous-containing
anhydrides [Lactococcus lactis subsp. cremoris CNCM
I-1631]
Length = 758
Score = 246 bits (627), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 216/732 (29%), Positives = 348/732 (47%), Gaps = 118/732 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
LQ +N++Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LQGMNEKQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R S+ +A ++ I+TFHS +++ R A+ + F I G Q+ +
Sbjct: 64 AAKEMRERALSLTPRA--QDTLIATFHSMCVRILRRDADHIGYNRNFTIIDPGDQKSLM- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++IL + G ++NA+ S + L + +E
Sbjct: 121 --------KRILKEANLDPKKWEPKG----------LLNAI---SNAKNDLLDESAYE-- 157
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
A+ S + P E + A + + Y LR ++D+ DLI +++L P+V
Sbjct: 158 ----AQTSARHPYEM------VVARVYKIYQKELRKAESMDFDDLIMQTLRLFDENPDVL 207
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 208 SYYQGKFQYIHVDEYQDTNHAQYQLVKLLASRFQNICVVGDADQSIYGWRGADMQNILDF 267
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+++I++N+KR + K + T N G KI+ NE
Sbjct: 268 EKDYPKAKVVLLEENYRSTKTILDAANNVIKNNLKR-RPKELWTQNDAGDKIVYFRAGNE 326
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ +K+ E ++G S SY A+LYR + + +F + IP+ + G F
Sbjct: 327 QEEA----NKVSEIITSGIRSGRSYADYAVLYRTNAQSRTIEDSFVKSNIPYTMVAGTKF 382
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIRKC 703
Y +K +R +IA L D+ + R+ E K+ V ++ + + + R
Sbjct: 383 YSRKEIRDVIAYLNVVANPADNMSFERIV-------NEPKRGVGPGALEKLRRFADSRGL 435
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
S ++ DI + I G + + L M L+R S + V M
Sbjct: 436 SLADSSFDIMLSDIRG--------KAAGEIYNLAMAFDLLRTHSESSTITELVEEM---- 483
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLS-TKFTAAKEEGNVDQDK---- 818
LE+ V K L + + Q + ++ +FLS TK K E +D++
Sbjct: 484 --LERTGYV-----KALQMMPSIEN--QARIENIEEFLSVTKGFDEKSEIPLDEETGEPI 534
Query: 819 -KGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
+ ++ L F++ +S ET+ + + + VT+ T+H +KGLE+ IVF+ E
Sbjct: 535 VETGLDKLSRFLNEVSLLSETDAY----EEESDQVTMMTLHAAKGLEFPIVFLIGMEENI 590
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPS 929
PL VNE +EEERRL YV +TRA + L+ +M+AN ++L +PS
Sbjct: 591 FPLSR-----VNEDIDELEEERRLAYVGITRAEETLY----LMNANQRVLYGKTNYNRPS 641
Query: 930 RFLKEIPHHLRE 941
RF+ EI L E
Sbjct: 642 RFISEIDDELLE 653
>gi|417910991|ref|ZP_12554704.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU105]
gi|341654430|gb|EGS78176.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU105]
Length = 729
Score = 246 bits (627), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 216/734 (29%), Positives = 348/734 (47%), Gaps = 119/734 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++++N +Q EA PLLI+AG GSGK +SP NILA+TFT
Sbjct: 5 VKNMNSEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ ++I
Sbjct: 64 AAKEMKARVEHLVGEE-AQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQK-SVI 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ V EN + KR M G ++ L
Sbjct: 122 KDVLKSEN---IDSKRFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP + +K + ++ A + + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PE + YQ+ ++ I VDE+QDT+ QY+L+++LA+ + +VGD DQSI+ + GADI
Sbjct: 203 PETLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ K I L +NYRST+ I+ AA+ +I+HN +R + K + T NS G KI E
Sbjct: 263 ILSFEEDYPEAKTIFLEQNYRSTKNILNAANEVIKHNSER-KPKGLWTANSGGDKIQYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++H +G Y +AILYR +V + F + IP+ +
Sbjct: 322 AMTERDEAEYVVKEIMKHQRSGK----KYSEMAILYRTNAQSRVLEETFMKSNIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD + + KR I ++KI T
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQLIINV--------PKRGIGPSSVEKIQTYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + G K+ +TQ + + EMI L++ + + I+ + + V
Sbjct: 430 LQNNISMFDALAEVDFIGLSKK--VTQ--ECISFYEMIQNLIKEQEFLE--ISEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
QK G + +L+ + + S + L ++ +F+S E N +++
Sbjct: 484 QK-----------SGYRDMLDREQSIES--RSRLENLDEFMS---VPKDYEENTPLEEQS 527
Query: 821 CINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
IN L + + I E +T +N VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 528 LINFLTDLSLVADIDEADT----------QNGVTLMTMHSAKGLEFPIVFIMGMEESLFP 577
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
+ +E +EEERR+ YVA+TRA + L+I M+ Q PSRFLKEI
Sbjct: 578 HIRAIK---SEDDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKEI 634
Query: 936 PHHLREVQAEQSVQ 949
P L + Q Q
Sbjct: 635 PEDLLDSHTGQKRQ 648
>gi|302536344|ref|ZP_07288686.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. C]
gi|302445239|gb|EFL17055.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. C]
Length = 825
Score = 246 bits (627), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 211/724 (29%), Positives = 333/724 (45%), Gaps = 112/724 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN+QQ AA +PLLIVAG GSGK + P ILA+TFT
Sbjct: 66 LDGLNEQQ-AAAVVHAGSPLLIVAGAGSGKTRVLTHRIGHLLSARNVHPGQILAITFTNK 124
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A + +STFHS +++ R +++L TS F IY +R +
Sbjct: 125 AAGEMKERVEGLVGP-RANAMWVSTFHSACVRILRRESKRLGFTSSFSIYDAADSKRLMA 183
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
LV + + D F SF + + + +
Sbjct: 184 -----------LVCRDLDLDPKK--------------------FPPKSFN-AKISNLKNE 211
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+D + + F K + A Y G LR NALD+ D+I +V LL FP+V
Sbjct: 212 LIDEDAFAAQAADGFEKTLAQAYAM----YQGRLREANALDFDDIIMTTVHLLQAFPDVA 267
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-------RITIVGDDDQSIFSFNGADI 522
+ Y+ ++ ++VDE+QDT+ QY+L++ L + +VGD DQSI++F GA I
Sbjct: 268 EHYRRRFRHVLVDEYQDTNHAQYTLVRELVGPGYPDLPPAELCVVGDADQSIYAFRGATI 327
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
F +D+ + I L +NYRST+ I+ AA+++I+ N R + KN+ T G+ I
Sbjct: 328 RNILQFEEDYKDATTILLEQNYRSTQTILSAANAVIERNENR-RAKNLWTQAGTGAVITG 386
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN- 641
E + F+ D+I G A G +AI YR +VF+ F +P+
Sbjct: 387 YVADTEHDEAQFVADEIDRLTDAGDAKA---GDVAIFYRTNAQSRVFEEIFIRVGLPYKV 443
Query: 642 IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
+ GV FY +K VR ++A LR D+ P RR+ + ++ +R ID ++
Sbjct: 444 VGGVRFYERKEVRDVLAYLRVLANPEDNVPLRRILN---VPKRGIGERAEAMIDALAMRE 500
Query: 702 KCSFISA---ACDIFG--AKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSV 756
K +F A + FG A+ + KR + +E + +V + V+ +V
Sbjct: 501 KITFPQALRRVDEAFGMAARSTNAVKRFN--------VLMEELRTIVDSGAGPAVVLEAV 552
Query: 757 ANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQ 816
YL E +A D +D LQ L A ++ +F A++E N
Sbjct: 553 LERT--GYLAELQASTD-------PQDETRIENLQELAA-----VALEFEQARDESNP-- 596
Query: 817 DKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANET 875
L F++ ++ +++ + D +TL T+H +KGLE+ +VF+ +
Sbjct: 597 ------GTLAEFLEQVALVADSDQIPDEDTDGSGVITLMTLHTAKGLEFPVVFLTGMEDG 650
Query: 876 EIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSRFL 932
P + G E +EEERRL YV +TRAR++L++ M + W PSRFL
Sbjct: 651 VFPHMRAL-GQTKE----LEEERRLAYVGITRARERLYLTRSSMRSAWGTPSYNPPSRFL 705
Query: 933 KEIP 936
+EIP
Sbjct: 706 EEIP 709
>gi|257054559|ref|YP_003132391.1| ATP-dependent DNA helicase PcrA [Saccharomonospora viridis DSM
43017]
gi|256584431|gb|ACU95564.1| ATP-dependent DNA helicase PcrA [Saccharomonospora viridis DSM
43017]
Length = 817
Score = 246 bits (627), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 219/746 (29%), Positives = 339/746 (45%), Gaps = 110/746 (14%)
Query: 241 YSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMT 285
+ L LN Q AA PLLIVAG GSGK G+ P I+A+T
Sbjct: 18 HGPLLDDLNPAQ-RAAVEHQGRPLLIVAGAGSGKTRVLTRRIAYLLAARGVHPGQIMAIT 76
Query: 286 FTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQR 345
FT AA+EMRDR+ +VG A + +STFHS ++L R A+ LE TS F IY R
Sbjct: 77 FTNKAAAEMRDRVVDLVG-GRAGAMWVSTFHSMCVRLLRREAKTLELTSNFSIYDADDSR 135
Query: 346 RAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNK 405
R + R LE L KR S L H ++ L +A N
Sbjct: 136 RLMALVGRDLE----LDPKRYSARALAN--HVSNLKNELIDPDAA--------ADAAAND 181
Query: 406 FERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
FER + + Y L NALD+ DLI+ +V+L F
Sbjct: 182 FERRAAEAYR----------------------EYQNRLAQANALDFDDLIARTVELFQAF 219
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN---------RITIVGDDDQSIFS 516
P+V + Y+ ++ ++VDE+QDT+ QY+L++ L + +VGD DQSI++
Sbjct: 220 PDVAEHYRRRFRHVLVDEYQDTNHAQYTLIRELVGTGPTESGLPPSELCVVGDADQSIYA 279
Query: 517 FNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSH 576
F GA I + F +DF + + I L +NYRST+ I+ AA+++I N R + K + TD
Sbjct: 280 FRGATIRNIEEFERDFPDARTILLEQNYRSTQTILSAANAVISRNPGRRE-KRLWTDAGQ 338
Query: 577 GSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRER 636
G +I+ +E + AF+ ++I G A Y +A+ YR +VF+ F
Sbjct: 339 GERIVGYVADSEHDEAAFVAEEIDALVDRGEA---KYSDVAVFYRTNNQSRVFEEIFIRL 395
Query: 637 KIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI-DHI 694
+P+ + GV FY +K V+ +A LR D RR+ E + V+ H
Sbjct: 396 GLPYRVVGGVRFYERKEVKDALAYLRVLANPEDTVSLRRILNVPKRGIGERAEAVVATHA 455
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMIS---KLVRREPSISA 751
++ + SF SA D +I RSQ + + +E+I +LV ++
Sbjct: 456 ER----ERISFASALRDAVAGRIPLLNPRSQ----KAITAFVELIDGLRELVDEGTDVAD 507
Query: 752 VITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST--KFTAAK 809
V+ +V + + LE D +L N D L + + T+F + + T
Sbjct: 508 VLEAVLDRTGYRAELEGSDDPQ-DASRLENLDE-----LVTVAREFTEFARSVGEDTGTS 561
Query: 810 EEGNVDQD-------KKGCINVLKAFIDYISERET----EHFRTQRHDNENSVTLTTIHQ 858
E+ +V D + G ++ + +++ ++ + D + VTL T+H
Sbjct: 562 EDTDVATDFEDADVAEPGSLSAFLERVSLVADADSVPSPDGEGADEADEDGVVTLMTVHT 621
Query: 859 SKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM 918
+KGLE+ +VF + P + A+ E + EERRL YVA+TRA+++L++ +
Sbjct: 622 AKGLEYPVVFCTGWEDGVFPHLR----ALGEP-KELAEERRLAYVAITRAQRRLYVSRAL 676
Query: 919 MDANWQLLQP-----SRFLKEIPHHL 939
+ W QP SRFL EIP L
Sbjct: 677 VRNAWG--QPMSNPASRFLDEIPAEL 700
>gi|333989534|ref|YP_004522148.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium sp. JDM601]
gi|333485502|gb|AEF34894.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium sp. JDM601]
Length = 768
Score = 246 bits (627), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 219/737 (29%), Positives = 340/737 (46%), Gaps = 103/737 (13%)
Query: 240 EYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAM 284
E L LN QQ A + S PLLIVAG GSGK + +LA+
Sbjct: 8 EIDHLLDGLNPQQRRAVLHEGS-PLLIVAGAGSGKTAVLTRRIAYLLAARDVGVGQVLAI 66
Query: 285 TFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQ 343
TFT AA+EMR+R+ +VG A+ + +STFHS +++ R+ A + S F IY
Sbjct: 67 TFTNKAAAEMRERVVDLVGP-RARVMWVSTFHSTCVRILRNQASVVPGLNSNFSIYDADD 125
Query: 344 QRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQY 403
RR ++ ++ + L VKR + +L A + N ++ + L +
Sbjct: 126 SRRLLL----MIGRDMGLDVKRHTPRLLAN--------AISNLKNELIDPDRALADLTE- 172
Query: 404 NKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
D D+++ + AA+ Y LRS NALD+ DLI +V +L
Sbjct: 173 -----DSDDLSR---------------VVAAVYVEYQRRLRSANALDFDDLIGETVAILQ 212
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN--------RITIVGDDDQSIF 515
FPE+ Q Y+ ++ I+VDE+QDT+ QY L++ LA H + +VGD DQSI+
Sbjct: 213 AFPEIAQHYRRRFRHILVDEYQDTNHAQYVLVRELAGHGGSGEVPPAELCVVGDADQSIY 272
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I + F +D+ + + L +NYRST+ I+ AA+++I N R + K + TD
Sbjct: 273 AFRGATIRNIEDFERDYPDATTMLLEQNYRSTQNILSAANAVIACNSGRRE-KRLWTDAG 331
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G I+ NE + F+ +I E S+ A +YG IA+ YR S + + F
Sbjct: 332 DGELIVGYVADNEHDEARFVAQEI-EVLSD--AGELNYGDIAVFYRTNNSSRSLEEVFIR 388
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
IP+ + GV FY +K +R IIA LR D RR+ ++ + D
Sbjct: 389 TGIPYKVVGGVRFYERKEIRDIIAYLRVLDNPGDAVSLRRILNT-------PRRGIGDRA 441
Query: 695 DKISTIRK----CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSIS 750
+ ++ F +A ++ RSQ V + E+ +KL + +
Sbjct: 442 EACVSVHAENTGTGFGAALRAAAEGQVPMLNSRSQNAIAGFVAMIDELRAKLHSGDDDLG 501
Query: 751 AVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKE 810
++ V + Y E A D L+ N+L SV D + L+ + +E
Sbjct: 502 GLVELVLDRT--GYRAELEASTDPQDLARLDNINELVSVAHEFSIDRANALAEQENLPEE 559
Query: 811 EGNVDQDKKGCINVLKAFIDYIS-----ERETEHFRTQRHDNENSVTLTTIHQSKGLEWD 865
E D + VL AF++ +S + EH VTL T+H +KGLE+
Sbjct: 560 EDIPD------VGVLAAFLERVSLIADTDEIPEH-------GAGMVTLMTLHTAKGLEFP 606
Query: 866 IVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW-- 923
+VFV + P + A + EERRL YV +TRAR++L++ + ++W
Sbjct: 607 VVFVTGWEDGMFPHMRSLGDA-----RELSEERRLAYVGLTRARQRLYLTRAKVRSSWGQ 661
Query: 924 QLLQP-SRFLKEIPHHL 939
+L P SRFL+EIP L
Sbjct: 662 PMLNPESRFLREIPQQL 678
>gi|336437239|ref|ZP_08616945.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
1_4_56FAA]
gi|336005365|gb|EGN35410.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
1_4_56FAA]
Length = 770
Score = 246 bits (627), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 207/725 (28%), Positives = 343/725 (47%), Gaps = 117/725 (16%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAA 291
+LN+QQ EA PLLI+AG GSGK G++P NILA+TFT AA
Sbjct: 6 TLNEQQKEAVF-HTEGPLLILAGAGSGKTRVLTHRIAYLIEERGVNPWNILAITFTNKAA 64
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEA 351
EMR+R+ +VG A+ + +STFHS +++ R + +++ + F IY Q+ + +
Sbjct: 65 GEMRERVDRLVGFG-AESIWVSTFHSTCVRILRRYIDRIGFDTNFTIYDSDDQKSLMRDV 123
Query: 352 VRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
R+L+ + +R +F S S
Sbjct: 124 CRVLDVDTKKYKER-------------------------MFLSAIS-------------- 144
Query: 412 DVAKASGKTPAEFR-----KIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
AK TP E+ G + A + Y L + NALD+ DL+ +V+L T P
Sbjct: 145 -AAKDEMITPDEYELNAAGDFGKQKIAQVYREYERQLHANNALDFDDLLLKTVQLFQTQP 203
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGF 525
+V + YQ+ ++ I+VDE+QDT+ +Q+ + +LA+ + + +VGDDDQSI+ F GA+I
Sbjct: 204 DVLESYQERFRYIMVDEYQDTNTVQFKFVSLLAAKYQNLCVVGDDDQSIYKFRGANIRNI 263
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
+F ++F N + I+L +NYRST+ I+ AA+++IQ+N R + K + TDN G K+ +++
Sbjct: 264 LNFEQEFQNARVIKLEQNYRSTQNILNAANAVIQNNRGR-KDKTLWTDNGDGEKVHLRQF 322
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HG 644
+ F+ D I ++ NG +Y AILYR ++F+ F IP+ I G
Sbjct: 323 DTAYDEAEFVADDIRKNIENGG----TYQDYAILYRTNAQSRMFEEKFVACNIPYKIVGG 378
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCS 704
V FY ++ ++ ++ L+T G DD RR+ + ++ I I + + R+
Sbjct: 379 VNFYARREIKDLLCYLKTIDNGRDDLAVRRIIN---VPKRGIGLTTITRIQESAAAREIG 435
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKY 764
F A + G + R+ K+ + +I RR +S IT + N + +K
Sbjct: 436 FYEA---LLGLDLIPGVARA----ASKLDSFVALIEYFKRRSDEVS--ITDLMNEIIEK- 485
Query: 765 LLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINV 824
G + N + + + Q + ++ + +S K A +E+ +Q K
Sbjct: 486 -----------TGYIENLEAEDKEDAQARIENIEELVS-KIAAYEEQCAAEQVKPSLSQF 533
Query: 825 LK-----AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
L+ A ID + E N + V L T+H +KGLE+ V++ + P
Sbjct: 534 LEEVALVADIDSLEE------------NPDYVVLMTLHSAKGLEFPHVYLVGMEDGLFP- 580
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ ++ +EEERRL YV +TRA ++L + M + SRFL+EIP
Sbjct: 581 --SYMTITSDNDEDLEEERRLCYVGITRAEQELTMTCARKRMTRGETHYNRMSRFLQEIP 638
Query: 937 HHLRE 941
L E
Sbjct: 639 KELME 643
>gi|338706081|ref|YP_004672849.1| UvrD/REP family ATP-dependent DNA helicase [Treponema
paraluiscuniculi Cuniculi A]
gi|335344142|gb|AEH40058.1| UvrD/REP family ATP-dependent DNA helicase [Treponema
paraluiscuniculi Cuniculi A]
Length = 657
Score = 246 bits (627), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 213/731 (29%), Positives = 343/731 (46%), Gaps = 122/731 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
L +LN +Q A + PLLI+AG GSGK GI S ILA+TFT A
Sbjct: 2 LSTLNPEQ-RRAVTTLEGPLLIIAGAGSGKTRVITARIAYMLECGILQSRILALTFTNKA 60
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIE 350
A EM +RI ++ GK + +T+STFH+F + + R H L F IY +R I E
Sbjct: 61 AHEMSERIKALTGKPL-RNMTVSTFHAFGVTILREHIHVLGWRKNFSIYDENDKRALIRE 119
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
A + E L+ + + T+ ++T LF ++ K +R
Sbjct: 120 AAK----EVHLLPEVLDTNCVST-----------------LFSAI---------KMQRKN 149
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
+ + + A+ Y L+ NA+D+ DLI +++ S +P++
Sbjct: 150 LKELQHKER--------------ALWHEYQTALKLFNAVDFDDLIVLPIQIFSEYPDILA 195
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDSFRK 530
Y+D ++ I+VDEFQDTSA QY L+++LA+ N I +VGDDDQSI+S+ GA F SF K
Sbjct: 196 SYKDRYRYILVDEFQDTSAQQYRLMKMLATQN-ICVVGDDDQSIYSWRGAYHDNFLSFEK 254
Query: 531 DFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDA 590
DF EI L +NYRST I+ AA+ +I HN++R + K + + N G I I E
Sbjct: 255 DFPYATEITLEQNYRSTGTILAAANGVIAHNIQRKE-KALWSGNDSGKPIEIFNPETERD 313
Query: 591 QCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYR 649
+ FI + IL S S+G +L R ++ + F + IP+ + G++F++
Sbjct: 314 EAIFIANTILAEQIRASYSFSSFG---VLLRTNSFMRIIEDVFLQENIPYRVSGGMSFFQ 370
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAA 709
+K ++ +++ LR DD R+ + K+ + + I+ ++CS +A
Sbjct: 371 RKEIKDVLSYLRVISNPDDDVNLLRIINT---PRRGIGKKTLHLVSDIANTQQCSVFNAL 427
Query: 710 CDIFGAKISGTFKRSQ----------LTQGRKVLLTLEMISKLVRREPSISAVITSVANM 759
I + K S +TQ R LL+ + ++ VR+ V ++
Sbjct: 428 NQIINKTHAVDLKESHRTAVENFLQLITQARTHLLSGKNLAYKVRK---------FVEDI 478
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
YL+++ + N+ + ++L + + + E G++ D
Sbjct: 479 QYFNYLIQE------------FQKNEHAARFKFLQIEHLVESIEHWEQSSEHGSL-YDYL 525
Query: 820 GCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
+ +L D + ++ETE +V+L TIH SKGLE+ +V +A IP
Sbjct: 526 NRVTLLAR--DNV-QKETE----------GAVSLMTIHASKGLEFPVVLIAGVEAGTIP- 571
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMM---DANWQLLQPSRFLKEIP 936
HE + E+ S+EEERRL YVA+TRA++KL++ + + S FL EIP
Sbjct: 572 -HERS---IEEVHSIEEERRLFYVAITRAKEKLYLTHCRTRKRGGKREERTASPFLDEIP 627
Query: 937 HHLREVQAEQS 947
HL A +
Sbjct: 628 KHLVRAHAPEG 638
>gi|254392029|ref|ZP_05007220.1| ATP-dependent DNA helicase II [Streptomyces clavuligerus ATCC
27064]
gi|294814551|ref|ZP_06773194.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
27064]
gi|326442941|ref|ZP_08217675.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
27064]
gi|197705707|gb|EDY51519.1| ATP-dependent DNA helicase II [Streptomyces clavuligerus ATCC
27064]
gi|294327150|gb|EFG08793.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
27064]
Length = 825
Score = 245 bits (626), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 210/729 (28%), Positives = 340/729 (46%), Gaps = 111/729 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LN+QQ AA +PLLIVAG GSGK G+ P ILA+TFT
Sbjct: 71 LEGLNEQQ-RAAVVHAGSPLLIVAGAGSGKTRVLTHRIAHLLATRGVHPGQILAITFTNK 129
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A+ + + TFHS +++ R ++KL TS F IY +R +
Sbjct: 130 AAGEMKERVEQLVGP-RAQAMWVLTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMA 188
Query: 350 EAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
R L+ + K K S + + N ++ SF + FE
Sbjct: 189 LVCRDLDLDPKKFPPKSFSAKISN-------------LKNELI--DEESFADSAADGFE- 232
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
KT A+ ++ Y LR NALD+ D+I +V +L FP+V
Sbjct: 233 ----------KTLAQAYRM-----------YQARLREANALDFDDIIMTTVHMLQAFPDV 271
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-------RITIVGDDDQSIFSFNGAD 521
+ Y+ ++ ++VDE+QDT+ QY+L++ L + +VGD DQSI++F GA
Sbjct: 272 AEHYRRRFRHVLVDEYQDTNHAQYTLVRELVGPGYEDLPPAELCVVGDADQSIYAFRGAT 331
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII 581
I F +D+ + L +NYRS++ I+ AA+++I+ N R + KN+ T+ G++II
Sbjct: 332 IRNILQFEEDYPEATTVMLEQNYRSSQTILSAANAVIERNESR-RPKNLWTNAGDGAQII 390
Query: 582 IKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN 641
E + F+ D+I AS G +A+ YR +VF+ F +P+
Sbjct: 391 GYVADTEHDEAQFVADEIDRLTD---ASEVKAGDVAVFYRTNAQSRVFEEIFIRVGLPYK 447
Query: 642 -IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTI 700
+ GV FY ++ VR ++A LR D P RR+ + ++ +R ID +S
Sbjct: 448 VVGGVRFYERREVRDVLAYLRVLANPEDSVPLRRILN---VPKRGIGERAEAMIDALSLR 504
Query: 701 RKCSFISAACDI-----FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITS 755
K +F A + A+ + KR + G + +V + V+ +
Sbjct: 505 EKITFPQALIRVDEAYGMAARSANAVKRFNVLMGE--------LRTIVDSGAGPAVVLEA 556
Query: 756 VANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVD 815
V YL E +A D +D LQ L A +F E+ +
Sbjct: 557 VLERT--GYLAELQASTD-------PQDETRIENLQELAAVALEF---------EQARAE 598
Query: 816 QDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
+ +G L F++ ++ +++ + D +TL T+H +KGLE+ +VF++ +
Sbjct: 599 GEGEGGAGTLAEFLEQVALVADSDQIPDEDEDGSGVITLMTLHTAKGLEFPVVFLSGMED 658
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSRF 931
P + A+++K +EEERRL YV +TRAR++L++ M + W PSRF
Sbjct: 659 GVFPHMR----ALSQK-KELEEERRLAYVGITRARERLYLTRSTMRSAWGQPAYNPPSRF 713
Query: 932 LKEIP-HHL 939
L+EIP HL
Sbjct: 714 LEEIPVRHL 722
>gi|20807099|ref|NP_622270.1| superfamily I DNA/RNA helicase [Thermoanaerobacter tengcongensis
MB4]
gi|20515591|gb|AAM23874.1| Superfamily I DNA and RNA helicases [Thermoanaerobacter
tengcongensis MB4]
Length = 713
Score = 245 bits (626), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 213/716 (29%), Positives = 356/716 (49%), Gaps = 109/716 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +LN+QQ EA PLLI+AG GSGK +SPSNILA+TFT
Sbjct: 11 LANLNEQQKEAVTT-TEGPLLILAGAGSGKTRVLTHRIAYLIKEKKVSPSNILAITFTNK 69
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ R+ +++G +L +STFHS +++ R +KL F+I+ Q+ +
Sbjct: 70 AAEEMKTRVENLLG--YVGDLWVSTFHSACVRILRRDIDKLGYDRNFVIFDTTDQKALVQ 127
Query: 350 EAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
E ++ L+ +EK +K + +NA+ S + K+ +
Sbjct: 128 ECLKELDLSEKQYPIKMV--------------------LNAI---SSAKDKMV----YPD 160
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D +D + + RKI + I + Y L+ NALD+ D+I +++L PE+
Sbjct: 161 DYIDFFGDTYRN----RKIKE-----IYKLYQHKLKKINALDFDDIIIKTIELFKENPEI 211
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDS 527
+ YQ ++ I+VDE+QDT+ QY + +LA H + +VGDDDQSI+ + GAD+ +
Sbjct: 212 LEFYQRKFRYIMVDEYQDTNTPQYYFVNLLAQRHRNLCVVGDDDQSIYGWRGADVRNILN 271
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KD+ K I+L +NYRST+ I+EAA+ +I +NV R + K++ T N G KI++ E N
Sbjct: 272 FEKDYPEAKVIKLEQNYRSTKIILEAANHVIDNNVYRKK-KSLWTQNKEGEKIVLCELEN 330
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG-VA 646
E + F+I +I++ S+ AILYR + F+ A + K+P+ + G +
Sbjct: 331 EREEAEFVIQEIIKLKERENR---SFKDFAILYRTNAQSRPFEEALMKVKVPYKVVGALR 387
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFI 706
FY +K ++ I+A LR + DD ++R+ + + I+ ++K++ + S
Sbjct: 388 FYDRKEIKDILAYLRLIVNPYDDISFKRIVN---VPRRGIGPATIEALEKVAREKDTSLF 444
Query: 707 SAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLL 766
A D+ A+ G+ L Q ++ +L L+ ++ ++ SV++++ KY+L
Sbjct: 445 FAIEDLKNARNKGS-----LLQFKQFILD------LIDKKDAM-----SVSDLI--KYIL 486
Query: 767 EQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLK 826
EQ G + + + + ++ +FL+ AA E +DK +
Sbjct: 487 EQ-------TGYIEELKREESEEAEGRIENLNEFLN----AAYEFEESSEDK--SLEAFL 533
Query: 827 AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGA 886
A I +S+ + D SV L T+H +KGLE+ +VF+ E P F
Sbjct: 534 AGITLVSDIDMA------GDIGESVVLMTLHSAKGLEFPVVFMVGMEEGLFPSYSSF--- 584
Query: 887 VNEKGTSVEEERRLLYVAMTRARKKLFILYVM---MDANWQLLQPSRFLKEIPHHL 939
E +EEERRL YV +TR++++L++ Y + Q SRF+ EIP L
Sbjct: 585 --EDDHELEEERRLCYVGITRSKERLYLTYARQRNLYGRSQYNSYSRFISEIPERL 638
>gi|336410132|ref|ZP_08590613.1| hypothetical protein HMPREF1018_02630 [Bacteroides sp. 2_1_56FAA]
gi|335945594|gb|EGN07404.1| hypothetical protein HMPREF1018_02630 [Bacteroides sp. 2_1_56FAA]
Length = 786
Score = 245 bits (626), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 223/753 (29%), Positives = 356/753 (47%), Gaps = 116/753 (15%)
Query: 242 SKYLQSLNDQQLEAAC-GDMSTPLLIVAGPGSGK--------------GISPSNILAMTF 286
S Y++ LN+ Q A GD P L++AG GSGK G +P NILA+TF
Sbjct: 2 SDYIEELNESQRAAVLYGD--GPSLVIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTF 59
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQR- 345
T AA EM++RI VG+ A+ L + TFHS ++ R+ A + TS+F IY +
Sbjct: 60 TNKAAREMKERIARQVGEQRARFLWMGTFHSVFSRILRAEASHIGFTSQFTIYDSADSKS 119
Query: 346 --RAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQY 403
R+II+ + L +EK + + H S S +
Sbjct: 120 LIRSIIKEMGL--DEKTYKPGSVQARISNAKNHL---------------VSPSGYAA--- 159
Query: 404 NKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
NK +G D+A K PA I D I Y R A+D+ DL+ + L
Sbjct: 160 NKEAYEG-DLA---AKMPA----IRD-----IYSRYWERCRQAGAMDFDDLLVYTYILFR 206
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSL-LQILASHNRITIVGDDDQSIFSFNGADI 522
FP+V Y++ ++ ++VDE+QDT+ Q+S+ LQ+ + R+ +VGDD QSI+SF GADI
Sbjct: 207 DFPDVLARYREQFRYVLVDEYQDTNYAQHSIVLQLTKENQRVCVVGDDAQSIYSFRGADI 266
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
F K + + K +L +NYRST+ IV AA+SLI+ N ++ K V ++ G I +
Sbjct: 267 DNILYFTKIYPDTKVFKLEQNYRSTQTIVRAANSLIEKNERQIP-KEVFSEKERGEAIGV 325
Query: 583 KECHNEDAQCAFIIDKIL----EHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKI 638
+ +++ + + +KI EH Y AILYR +VF+ A R+R +
Sbjct: 326 FQAYSDVEEGDIVTNKIAQLRREHD-------YEYSDFAILYRTNAQSRVFEEALRKRGM 378
Query: 639 PFNIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKI 697
P+ I+ G++FY++K ++ IIA R + D+ ++R+ + + I
Sbjct: 379 PYKIYGGLSFYQRKEIKDIIAYFRLVVNPNDEEAFKRIIN---YPARGIGDTTVGKIITA 435
Query: 698 STIRKCSFISAACD--IFGAKIS-GTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+T S +A CD +G I+ GT + Q + L+ M V+ I I
Sbjct: 436 ATDNNVSLWTALCDPITYGLSINKGTHTK---LQDFRALIEQFMADVTVKNAYEIGTEII 492
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
+ ++ + D L ++N ++ L+ + DF + + +EEGN
Sbjct: 493 RQSGIINE-------VCQDNSPENLSRKEN-----IEELVNGMNDFCAMR----QEEGNT 536
Query: 815 DQDKKGCINVLKAFIDYISERE--TEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKA 872
NV + ID++SE T+ + D E VTL T+H +KGLE+ VFV
Sbjct: 537 --------NV--SLIDFLSEVSLLTDQDSDKEGDGEK-VTLMTVHSAKGLEFRNVFVVGM 585
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PS 929
E P +G + ++EEERRL YVA+TRA + F+ + + ++ PS
Sbjct: 586 EENLFP-----SGMAGDSPRAMEEERRLFYVAITRAEEHCFLSFAKTRFRYGKMEFGSPS 640
Query: 930 RFLKEIPHHLREVQAEQSVQDQHENIPEGTAQF 962
RFL++I ++ E ++ +I EG +F
Sbjct: 641 RFLRDIDTRFLQLPQEAAL---GRSIDEGAGRF 670
>gi|188588674|ref|YP_001919827.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum E3 str.
Alaska E43]
gi|188498955|gb|ACD52091.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum E3 str.
Alaska E43]
Length = 749
Score = 245 bits (626), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 213/686 (31%), Positives = 339/686 (49%), Gaps = 102/686 (14%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q E A + LLI+AG GSGK GI+P NILA+TFT AA
Sbjct: 7 LNKEQYEGAIT-IDGQLLILAGAGSGKTRVLTYRMAHMIEDMGIAPYNILAITFTNKAAK 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM+DR+ S++G + A+ + ISTFHS +++ R +K+ TS F IY Q+ I E +
Sbjct: 66 EMKDRVISLIG-SKAENMWISTFHSTCVRILRREIDKIGYTSNFTIYDTSDQKVLIKECM 124
Query: 353 RLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
+LL N+K + + I L+ G +A M A F
Sbjct: 125 KLLNINDKDISDQEI----LSKIG-----KAKDTMQTAQSFMR----------------- 158
Query: 412 DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQE 471
+ + FR+ +I A E Y L+ NALD+ DLI +V+L + PEV
Sbjct: 159 -------QNESNFRE--KKIAEA-YEMYQRRLKENNALDFDDLIFKAVELFKSNPEVLDF 208
Query: 472 YQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRK 530
YQ+ +K I+VDE+QDT+ QY L+++LAS + I +VGDDDQ I+ + GADI F K
Sbjct: 209 YQNKFKYIMVDEYQDTNGAQYELIKLLASKYKNICVVGDDDQCIYQWRGADIQNILDFEK 268
Query: 531 DFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDA 590
D+ N K I+L +NYRS I+ AA+ +I +N R + K ++T+ G KI I ++
Sbjct: 269 DYPNAKVIKLEQNYRSKSNILNAANVVIVNNANR-KSKVLRTEQEAGDKIKIYRAFSDSD 327
Query: 591 QCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVAFYR 649
+ F+ +I E S Y AILYR ++F+ + R R IP+ I G FY
Sbjct: 328 EGDFVSKQIAEIKSKENK---EYKDFAILYRTNAQSRIFEESLRRRGIPYKIVGGTRFYD 384
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAA 709
+K ++ I+A L+ + DD +R+ K+ + D +S I++ + S
Sbjct: 385 RKEIKDILAYLKAIVNPRDDVSLKRIINV-------PKRSIGDAT--VSKIQEFAN-SFE 434
Query: 710 CDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQR 769
D++ A + R+ T + +E+ + L+ S+S T+ +++ + L +
Sbjct: 435 LDMWDALME---VRTIPTLTPRNANNIEVFTNLMEEFMSLSE--TAPISILIESILKDTG 489
Query: 770 AVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFI 829
+ + K + ED L+ L++D DF E+ N D+ L A++
Sbjct: 490 YLKQLEASKEI-EDKSRIENLKELVSDAVDF---------EKNNEDKS-------LAAYL 532
Query: 830 DYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVN 888
+ +S ++T+ Q E+++ L T+H +KGLE+ +VF+ P F
Sbjct: 533 EKVSLVQDTDKIEEQ----EDTIVLMTVHSAKGLEFPVVFMVGMENGIFPGNMSF----- 583
Query: 889 EKGTSVEEERRLLYVAMTRARKKLFI 914
EK + +EE RRL YV +TRA++ LF+
Sbjct: 584 EKESEMEESRRLCYVGITRAKETLFM 609
>gi|359145926|ref|ZP_09179594.1| ATP-dependent DNA helicase II [Streptomyces sp. S4]
Length = 849
Score = 245 bits (626), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 224/745 (30%), Positives = 335/745 (44%), Gaps = 117/745 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LND+Q AA +PLLIVAG GSGK G+ P ILA+TFT
Sbjct: 72 LDGLNDEQ-RAAVVHSGSPLLIVAGAGSGKTRVLTHRIAHLLGERGVHPGQILAITFTNK 130
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A + +STFHS +++ R ++ L TS F IY +R +
Sbjct: 131 AAGEMKERVEELVGP-RANAMWVSTFHSACVRILRRESKHLGFTSSFSIYDAADSKRLMA 189
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFK--LCQYNKFE 407
R L+ L KR T +S+ K L F
Sbjct: 190 LVCRDLD----LDPKRYPPKSFTA--------------------KVSNLKNELVDPEDF- 224
Query: 408 RDGMDVAKASGKTPAEFRKIG-DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
A+A+G T G ++ A Y LR NALD+ D+I +V LL FP
Sbjct: 225 -----AAQAAGGTSQTESGGGFEKTLAQAYTMYQSRLREANALDFDDIIMTTVHLLQAFP 279
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL----------------ASHN-------- 502
+V Y+ ++ ++VDE+QDT+ QYSL++ L + H+
Sbjct: 280 DVADHYRRRFRHVLVDEYQDTNHAQYSLVRELVGTPADRPVDVPEGAESDHDPLHPAPEP 339
Query: 503 -RITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHN 561
+ +VGD DQSI++F GA I F +D+ N I L RNYRST+ I+ AA+++I+ N
Sbjct: 340 AELCVVGDADQSIYAFRGATIRNILQFEEDYPNATTILLERNYRSTQTILTAANAVIERN 399
Query: 562 VKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYR 621
R + KN+ TD G+ I E + F+ ++I G A G IA+ YR
Sbjct: 400 ENR-RPKNLWTDAGAGAGITGYVADTEHDEAQFVAEEIDRLTDAGDAKA---GDIAVFYR 455
Query: 622 RQVSGKVFQTAFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFL 680
+VF+ F +P+ + GV FY +K VR ++A LR D RR+
Sbjct: 456 TNAQSRVFEEIFIRVGLPYKVVGGVRFYERKEVRDVLAYLRVLANPEDSVSLRRILNT-- 513
Query: 681 LLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMIS 740
++ R ID +S + SF A + + G RS R L +E +
Sbjct: 514 -PKRGIGDRAEAMIDALSQRERVSFPQALRRV--DEAYGMAARSANAVKRFNTL-MEELR 569
Query: 741 KLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDF 800
+V + V+ +V M YL E +A D +D LQ L A +F
Sbjct: 570 TVVESGAGPATVLEAV--MERTGYLAELQASTD-------PQDETRIENLQELAAVALEF 620
Query: 801 LSTKFTAAKEEGNVDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQS 859
+ ++EEG L F++ ++ +++ + D +TL T+H +
Sbjct: 621 EQDR---SEEEG---------AGTLPEFLEQVALVADSDQIPDEDEDGSGVITLMTLHTA 668
Query: 860 KGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMM 919
KGLE+ +VF+ + P + G E +EEERRL YV +TRAR++L++ M
Sbjct: 669 KGLEFPVVFLTGMEDGVFPHMRAL-GQTKE----LEEERRLAYVGITRARERLYLTRAAM 723
Query: 920 DANW---QLLQPSRFLKEIP-HHLR 940
+ W PSRFL+EIP HL+
Sbjct: 724 RSAWGQPSYNPPSRFLEEIPEQHLK 748
>gi|417906360|ref|ZP_12550150.1| ATP-dependent DNA helicase PcrA [Staphylococcus capitis VCU116]
gi|341598016|gb|EGS40534.1| ATP-dependent DNA helicase PcrA [Staphylococcus capitis VCU116]
Length = 731
Score = 245 bits (626), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 211/727 (29%), Positives = 345/727 (47%), Gaps = 121/727 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++++N +Q EA PLLI+AG GSGK +SP NILA+TFT
Sbjct: 5 VKNMNTEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLVEKDVSPYNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAKEMKERVEQLVGEE-AQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I KR M G ++ L
Sbjct: 123 D---VLKNENI-DSKRFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP + +K + ++ A + + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPDDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
P+ + YQ+ ++ I VDE+QDT+ QY+L+++LA+ + +VGD DQSI+ + GADI
Sbjct: 203 PDALEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ K I L +NYRST+ I+ AA+ +I++N +R + K + T N+ G KI E
Sbjct: 263 ILSFEEDYPEAKTIFLEQNYRSTKNILNAANEVIKNNSER-KPKGLWTANTGGDKIQYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++H NG Y +AILYR +V + F + IP+ +
Sbjct: 322 AMTERDEAEYVVKEIMKHQRNGK----KYSDMAILYRTNAQSRVLEETFMKSNIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR I ++KI T
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINV--------PKRGIGPSSVEKIQTYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREP--SISAVITSVANM 759
S IS + G K+ +TQ + + E I+ L++ + IS ++ V
Sbjct: 430 VQSNISMFDALGEVDFIGLSKK--VTQ--ECINFYETITHLIKEQEFLEISEIVEEVLKK 485
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
+ +LE+ ++ RS L+ ++ +F+S E N +++
Sbjct: 486 SGYRDMLEREQTLES------------RSRLE----NLDEFMS---VPKDYEENTPLEEQ 526
Query: 820 GCINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
IN L + + I E D ++ VT+ T+H +KGLE+ IVF+ E+
Sbjct: 527 SLINFLTDLSLVADIDE----------ADTQSGVTMMTMHSAKGLEFPIVFIMGMEESLF 576
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKE 934
P + ++ +EEERR+ YVA+TRA + L++ M+ Q PSRFLKE
Sbjct: 577 PHIRAIK---SDDDHEMEEERRICYVAITRAEELLYVTNATTRMLFGRSQSNMPSRFLKE 633
Query: 935 IPHHLRE 941
IP L E
Sbjct: 634 IPEELLE 640
>gi|223044036|ref|ZP_03614076.1| ATP-dependent DNA helicase PcrA [Staphylococcus capitis SK14]
gi|222442579|gb|EEE48684.1| ATP-dependent DNA helicase PcrA [Staphylococcus capitis SK14]
Length = 731
Score = 245 bits (626), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 211/727 (29%), Positives = 345/727 (47%), Gaps = 121/727 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++++N +Q EA PLLI+AG GSGK +SP NILA+TFT
Sbjct: 5 VKNMNTEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLVEKDVSPYNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAKEMKERVEQLVGEE-AQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I KR M G ++ L
Sbjct: 123 D---VLKNENI-DSKRFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP + +K + ++ A + + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPDDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
P+ + YQ+ ++ I VDE+QDT+ QY+L+++LA+ + +VGD DQSI+ + GADI
Sbjct: 203 PDALEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ K I L +NYRST+ I+ AA+ +I++N +R + K + T N+ G KI E
Sbjct: 263 ILSFEEDYPEAKTIFLEQNYRSTKNILNAANEVIKNNSER-KPKGLWTANTGGDKIQYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++H NG Y +AILYR +V + F + IP+ +
Sbjct: 322 AMTERDEAEYVVKEIMKHQRNGK----KYSDMAILYRTNAQSRVLEETFMKSNIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR I ++KI T
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINV--------PKRGIGPSSVEKIQTYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREP--SISAVITSVANM 759
S IS + G K+ +TQ + + E I+ L++ + IS ++ V
Sbjct: 430 VQSNISMFDALGEVDFIGLSKK--VTQ--ECINFYETITHLIKEQEFLEISEIVEEVLKK 485
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
+ +LE+ ++ RS L+ ++ +F+S E N +++
Sbjct: 486 SGYRDMLEREQTLES------------RSRLE----NLDEFMS---VPKDYEENTPLEEQ 526
Query: 820 GCINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
IN L + + I E D ++ VT+ T+H +KGLE+ IVF+ E+
Sbjct: 527 SLINFLTDLSLVADIDE----------ADTQSGVTMMTMHSAKGLEFPIVFIMGMEESLF 576
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKE 934
P + ++ +EEERR+ YVA+TRA + L++ M+ Q PSRFLKE
Sbjct: 577 PHIRAIK---SDDDHEMEEERRICYVAITRAEELLYVTNTTTRMLFGRSQSNMPSRFLKE 633
Query: 935 IPHHLRE 941
IP L E
Sbjct: 634 IPEELLE 640
>gi|42524707|ref|NP_970087.1| ATP-dependent DNA helicase [Bdellovibrio bacteriovorus HD100]
gi|39576917|emb|CAE78146.1| ATP-dependent DNA helicase [Bdellovibrio bacteriovorus HD100]
Length = 762
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 213/728 (29%), Positives = 340/728 (46%), Gaps = 123/728 (16%)
Query: 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSN-ILAMTFTTAA 290
++LN Q +A + PLLI+AG GSGK G++ S+ IL +TFT A
Sbjct: 9 KNLNPAQKDA-VETLEGPLLILAGAGSGKTRVLTHRMANMIGQGVAASDEILCVTFTNKA 67
Query: 291 ASEMRDRIGSIV---GKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
A EM RI I+ G +L ISTFHSF +++ R H L+ F IY Q
Sbjct: 68 AKEMEHRIYKILSDMGAVVQTQLWISTFHSFCVRVLRQHITLLDYKPFFGIYDSSDQLSQ 127
Query: 348 IIEAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
I + + L+ N+K+ K + +SS K+ +
Sbjct: 128 IKKVMTALDINDKMYPAKNFQS-------------------------RISSAKMMGLSP- 161
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
+G++ K+S +++ D+ + + Y ++ N+LD+ DL+ + L +P
Sbjct: 162 --EGLE--KSS-------KRLMDQKTVEVYKAYEREMKKANSLDFDDLLLKTYDLFRMYP 210
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGF 525
+V Q YQ ++ I+VDE+QDT+ +QY L+Q+LAS H + +VGD+DQSI+S+ GADI
Sbjct: 211 DVLQMYQKKFRYIMVDEYQDTNHIQYLLVQMLASAHRNLCVVGDEDQSIYSWRGADIKNI 270
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
F KDF + K I+L NYRS+ IV A+++I++N +R K + T N G I ++E
Sbjct: 271 LDFEKDFRDAKVIKLEENYRSSANIVNGATAVIKNNSQRKD-KTLFTSNDPGDLIHVREE 329
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHG 644
NE + F+ I + G SY AI YR +V + R IP+ + G
Sbjct: 330 KNEYEEGRFVAKTIQSMMNEGEG---SYNDYAIFYRTNAQSRVLEEQLRTMGIPYRLVGG 386
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCS 704
V FY + ++ +I+ L+ ++ DD +R+ + + K I+ I++ + + S
Sbjct: 387 VRFYERMEIKDMISYLKLSINPADDIALKRIIN---VPARGIGKTTIEKIEEYAAHKNLS 443
Query: 705 FISA---ACD--IFGAKISGTFKR-----SQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
A AC+ +F A +G +R L Q + L LE + ++ R ++A+
Sbjct: 444 MFEAAEKACEERLFNAGTTGKIRRFIDLMKDLQQNAQHLKLLEFFAVVLDRTEYLAALKK 503
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
+ E +A ++ L DN + +Q
Sbjct: 504 DESP--------ESQARIE----NLEELDNAIAQFVQ----------------------- 528
Query: 815 DQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
++G + L +F++ ++ Q ++ +TL H SKGLE+ VFV E
Sbjct: 529 ---ERGEESTLISFLEEMALVNDVDSLDQEQNSVTMMTL---HISKGLEYPYVFVVGLEE 582
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSRF 931
P A ++ VEEERRL YV MTRAR+KL++ Y M W Q PSRF
Sbjct: 583 NLFPSAR---SAESDNEQDVEEERRLAYVGMTRARQKLWLTYAKMRRVWGQEQFNPPSRF 639
Query: 932 LKEIPHHL 939
+KEIP +L
Sbjct: 640 IKEIPQNL 647
>gi|251778648|ref|ZP_04821568.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243082963|gb|EES48853.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 749
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 213/686 (31%), Positives = 339/686 (49%), Gaps = 102/686 (14%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q E A + LLI+AG GSGK GI+P NILA+TFT AA
Sbjct: 7 LNKEQYEGAIT-IDGQLLILAGAGSGKTRVLTYRMAHMIEDMGIAPYNILAITFTNKAAK 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM+DR+ S++G + A+ + ISTFHS +++ R +K+ TS F IY Q+ I E +
Sbjct: 66 EMKDRVISLIG-SKAENMWISTFHSTCVRILRREIDKIGYTSNFTIYDTSDQKVLIKECM 124
Query: 353 RLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
+LL N+K + + I L+ G +A M A F
Sbjct: 125 KLLNINDKDISDQEI----LSKIG-----KAKDTMQTAQSFMR----------------- 158
Query: 412 DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQE 471
+ + FR+ +I A E Y L+ NALD+ DLI +V+L + PEV
Sbjct: 159 -------QNESNFRE--KKIAEA-YEMYQRRLKENNALDFDDLIFKAVELFKSNPEVLDF 208
Query: 472 YQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRK 530
YQ+ +K I+VDE+QDT+ QY L+++LAS + I +VGDDDQ I+ + GADI F K
Sbjct: 209 YQNKFKYIMVDEYQDTNGAQYELIKLLASKYKNICVVGDDDQCIYQWRGADIQNILDFEK 268
Query: 531 DFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDA 590
D+ N K I+L +NYRS I+ AA+ +I +N R + K ++T+ G KI I ++
Sbjct: 269 DYPNAKVIKLEQNYRSKSNILNAANVVIINNANR-KSKVLRTEQEAGDKIKIYRAFSDSD 327
Query: 591 QCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVAFYR 649
+ F+ +I E S Y AILYR ++F+ + R R IP+ I G FY
Sbjct: 328 EGDFVSKQIAEIKSKENK---EYKDFAILYRTNAQSRIFEESLRRRGIPYKIVGGTRFYD 384
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAA 709
+K ++ I+A L+ + DD +R+ K+ + D +S I++ + S
Sbjct: 385 RKEIKDILAYLKAIVNPRDDVSLKRIINV-------PKRSIGDAT--VSKIQEFAN-SFE 434
Query: 710 CDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQR 769
D++ A + R+ T + +E+ + L+ S+S T+ +++ + L +
Sbjct: 435 LDMWDALME---VRTIPTLTPRNANNIEVFTNLMEEFMSLSE--TAPISVLIEAILKDTG 489
Query: 770 AVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFI 829
+ + K + ED L+ L++D DF E+ N D+ L A++
Sbjct: 490 YLKQLEASKEI-EDKSRIENLKELVSDAVDF---------EKNNEDKS-------LAAYL 532
Query: 830 DYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVN 888
+ +S ++T+ Q E+++ L T+H +KGLE+ +VF+ P F
Sbjct: 533 EKVSLVQDTDKIEEQ----EDTIVLMTVHSAKGLEFPVVFMVGMENGIFPGNMSF----- 583
Query: 889 EKGTSVEEERRLLYVAMTRARKKLFI 914
EK + +EE RRL YV +TRA++ LF+
Sbjct: 584 EKESEMEESRRLCYVGITRAKETLFM 609
>gi|451943586|ref|YP_007464222.1| ATP-dependent DNA helicase [Corynebacterium halotolerans YIM 70093
= DSM 44683]
gi|451902973|gb|AGF71860.1| ATP-dependent DNA helicase [Corynebacterium halotolerans YIM 70093
= DSM 44683]
Length = 807
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 217/758 (28%), Positives = 346/758 (45%), Gaps = 108/758 (14%)
Query: 238 PDEY---SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPS 279
PD + + LN+QQ +AA TPLLIVAG GSGK G++P
Sbjct: 15 PDSFGSDADLTAGLNEQQ-KAAVEHSGTPLLIVAGAGSGKTAVLTRRIAHLLRHRGVAPW 73
Query: 280 NILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLI 338
ILA+TFT AA+EMR+R+ ++G A A+ + ++TFHS +++ R A+ + + F I
Sbjct: 74 QILAITFTNKAAAEMRERVAGLIGPA-AERMWVATFHSICVRILRQQAQLVPGLNTNFTI 132
Query: 339 YGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSF 398
Y RR + ++ K ++ D+ F+ +
Sbjct: 133 YDGDDSRRLLT-----------MIAKDLNLDLKK--------------------FTARTL 161
Query: 399 KLCQYN-KFERDGMDVAKASG---KTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDL 454
N K E G + A A K P E A + E Y LRS NA+D+ DL
Sbjct: 162 NNAISNLKNELTGPEEALADAEATKNPFE------TTVAKVFEEYQRRLRSSNAVDFDDL 215
Query: 455 ISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN----RITIVGDD 510
I V++ P+V + Y+ ++ ++VDE+QDT+ QY L+ L + +VGD
Sbjct: 216 IGEVVRIFREHPQVTEYYRRRFRHVLVDEYQDTNHAQYELVSTLVGTGPEAAELCVVGDS 275
Query: 511 DQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNV 570
DQSI++F GA I + F +D+ I L +NYRST+ I+ AA+++I N R + KN+
Sbjct: 276 DQSIYAFRGATIRNIEEFERDYPQATTILLEQNYRSTQNILSAANAVISRNDGRRE-KNL 334
Query: 571 QTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQ 630
T + G +I+ NE + FI +I G SY IA++YR + + +
Sbjct: 335 WTAHGTGPEIVGYVSDNEHDEARFIASEIDALVDKG----RSYSDIAVMYRTNNASRALE 390
Query: 631 TAFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR 689
F IP+ + G FY ++ +R ++A LR D RR+ + R
Sbjct: 391 DVFIRAGIPYKVVGGTRFYERREIRDVVAYLRILDNPDDTVSLRRIINT---PRRGIGDR 447
Query: 690 VIDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLT-LEMISKLVRREPS 748
I+ + SF +A D K+ R GR ++ +EM+ L P+
Sbjct: 448 AQAFINLHAQNNGVSFGAALVDATNDKVDLLGAR-----GRNAVVKFVEMMDGLRNEMPT 502
Query: 749 ISAVITSVANMV--------PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDF 800
+ +T + ++ Y E A D G L+ N+L SV + ++ +
Sbjct: 503 LVNEVTGMPDLGELISRILDATGYRAELEASNDPQDGARLDNLNELVSVAREFSSEAANQ 562
Query: 801 LSTKFTAAKEEGNVDQDK-KGCINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIHQ 858
++ + + G V+ D+ + L+AF++ +S Q DNE VTL T+H
Sbjct: 563 VAYE---EMDGGQVELDEGEAAPGSLQAFLERVSLVADAD---QLPDNEQGVVTLMTLHT 616
Query: 859 SKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM 918
+KGLE+ +VF+ + + P + + EERRL YV +TRAR++L++ M
Sbjct: 617 AKGLEFPVVFLTGWEDGQFPHLRALGDP-----KELAEERRLAYVGITRAREQLYLTRAM 671
Query: 919 MDANWQ---LLQPSRFLKEIPHHL---REVQAEQSVQD 950
+ ++W PSRFL EIP L R + E S D
Sbjct: 672 LRSSWGNAVTNPPSRFLGEIPGELIDWRREEPENSFSD 709
>gi|398783419|ref|ZP_10546912.1| ATP-dependent DNA helicase II [Streptomyces auratus AGR0001]
gi|396995987|gb|EJJ06988.1| ATP-dependent DNA helicase II [Streptomyces auratus AGR0001]
Length = 813
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 213/717 (29%), Positives = 330/717 (46%), Gaps = 101/717 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ LND+Q +AA PLLIVAG GSGK + P ILA+TFT
Sbjct: 69 LEGLNDEQ-KAAVVHTGGPLLIVAGAGSGKTRVLTHRIAHLLAERHVHPGQILAITFTNK 127
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A + +STFHS +++ R ++KL TS F IY +R +
Sbjct: 128 AAGEMKERVEELVGP-RANAMWVSTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMA 186
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R L+ L KR + SF + + + +
Sbjct: 187 LVCRDLD----LDPKR---------------------------YPPKSFS-AKISNLKNE 214
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+D +G F K E A Y LR NALD+ D+I +V LL FP+V
Sbjct: 215 LIDEETFAGTASDGFEKTLAEAYAM----YQSRLREANALDFDDIIMTTVHLLQAFPDVA 270
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILA----SHNRITIVGDDDQSIFSFNGADISGF 525
+ Y+ ++ ++VDE+QDT+ QY+L++ L S + +VGD DQSI++F GA I
Sbjct: 271 EHYRRRFRHVLVDEYQDTNHAQYTLVRELVGPAESAAELCVVGDADQSIYAFRGATIRNI 330
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
F +D+ + I L +NYRS++ I+ AA+++I+ N R + KN+ TD G I
Sbjct: 331 LQFEEDYPDATTILLEQNYRSSQTILSAANAVIERNENR-RPKNLWTDAGSGPGITGYVA 389
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHG 644
E + F+ D+I G A G +A+ YR +VF+ F +P+ + G
Sbjct: 390 DTEHDEAQFVADEIDRLTDAGDAKA---GDVAVFYRTNAQSRVFEEIFIRVGLPYKVVGG 446
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCS 704
V FY +K VR ++A LR D P RR+ + ++ R ID +S K +
Sbjct: 447 VRFYERKEVRDVLAYLRVLANPEDTVPLRRILN---VPKRGIGDRAEAMIDALSLREKIT 503
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKY 764
F A + + G RS R +L +E + +V + V+ +V Y
Sbjct: 504 FPQALRRV--DEAYGMAARSANAVKRFNVL-MEELRTIVESGAGPATVLEAVLERT--GY 558
Query: 765 LLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK-KGCIN 823
L E +A D +D LQ L A +F +QD+ +
Sbjct: 559 LAELQASTD-------PQDETRIENLQELAAVALEF--------------EQDRGEANPG 597
Query: 824 VLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
L F++ ++ +++ + + +TL T+H +KGLE+ +VF+ + P +
Sbjct: 598 TLADFLEQVALVADSDQIPDEDEEGSGVITLMTLHTAKGLEFPVVFLTGMEDGVFPHMRA 657
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSRFLKEIP 936
G E +EEERRL YV +TRAR++L++ M + W PSRFL+EIP
Sbjct: 658 L-GQTKE----LEEERRLAYVGITRARERLYVTRSTMRSAWGQPSYNPPSRFLEEIP 709
>gi|339635132|ref|YP_004726773.1| ATP-dependent DNA helicase PcrA [Weissella koreensis KACC 15510]
gi|338854928|gb|AEJ24094.1| ATP-dependent DNA helicase PcrA [Weissella koreensis KACC 15510]
Length = 769
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 198/725 (27%), Positives = 338/725 (46%), Gaps = 114/725 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ +N QQ EA PLLI+AG GSGK ++P ILA+TFT
Sbjct: 6 LRGMNPQQAEAVTT-TEGPLLIMAGAGSGKTRVLTHRVAHLIKDKNVAPWRILAITFTNK 64
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++RI ++G A + +STFH+ ++++ R +KL +F I G QR +
Sbjct: 65 AAREMKERIADLIGAEDADRVWVSTFHAMAVRILRRDIDKLGYKRDFTIIDAGTQRTLV- 123
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+L+++ + + K +L+
Sbjct: 124 --KRILKDQNVDIEKFDPRSVLS------------------------------------- 144
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILEN----YNGILRSCNALDYHDLISCSVKLLSTF 465
+ AK + +TP ++ K +++ I+ Y L ++D+ DLI +++LL
Sbjct: 145 AISNAKNAMETPVDYAKTANDLFGKIVAKAYAAYQKQLGLSQSVDFDDLIMLTIELLEQE 204
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISG 524
PEV Q YQD ++ I VDE+QDT+ QY L+Q+LA + +VGD DQSI+ + GA++
Sbjct: 205 PEVLQYYQDKFQYIHVDEYQDTNDAQYRLIQLLADGWKNLAVVGDSDQSIYGWRGANLEI 264
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+F KD++ K++ L +NYRST+ I+ AA+ +I +N R KN+ T+N G KI
Sbjct: 265 ILNFEKDYVGAKKVLLEQNYRSTQTILNAANEVIANNNGRIT-KNLWTENGDGEKITYHR 323
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
+++ + +I+ +I N Y AILYR + + A + IP+ +
Sbjct: 324 SNSDRDEAVYILGEIANQVKNEKRQ---YRDFAILYRTNAQSRGIEEALVKANIPYTMVG 380
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
G FY +K +R I+A DD ++FL + E K+ + D S I+
Sbjct: 381 GSKFYDRKEIRDILAYFSLLTNPADD-------ESFLRVVNEPKRGLGD----TSIIKLR 429
Query: 704 SFISA-ACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
+F S + A + ++ + + + + + ++ IT +A ++ +
Sbjct: 430 AFASEHNWPLLEAAANANLMNDLQSRAQNKFMDFAALMQNLIQQEQFDVSITDLARVIYK 489
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
E V +N L ++ ++L VT+ + +E
Sbjct: 490 ----ETNYVETLKASPTPENENRLENLDEFLT--VTEQFDKNYVPDEES----------- 532
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ ++D++SE +++N+VTL T+H +KGLE+ +VF+ E+ P
Sbjct: 533 --VSKYVDFMSELALVSDIDNVDEDDNNVTLMTLHAAKGLEFPVVFLVGMEESIFP---S 587
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQPSRFLKEI 935
F ++ K ++EERRL YV +TRA++KL++ LY M+ N PSRF+ EI
Sbjct: 588 FRAIIDPK--QLDEERRLAYVGITRAKEKLYLTNAYTRMLYGKMNNN----MPSRFIDEI 641
Query: 936 -PHHL 939
P +L
Sbjct: 642 SPKYL 646
>gi|297192605|ref|ZP_06910003.1| ATP-dependent DNA helicase II [Streptomyces pristinaespiralis ATCC
25486]
gi|297151430|gb|EFH31159.1| ATP-dependent DNA helicase II [Streptomyces pristinaespiralis ATCC
25486]
Length = 811
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 215/724 (29%), Positives = 334/724 (46%), Gaps = 104/724 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L LN+QQ AA +PLLIVAG GSGK + P ILA+TFT
Sbjct: 66 LDGLNEQQ-RAAVVHTGSPLLIVAGAGSGKTRVLTHRIAHLLGTRRVHPGQILAITFTNK 124
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A + + TFHS +++ R ++KL TS F IY +R +
Sbjct: 125 AAGEMKERVEQLVGP-RANAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMS 183
Query: 350 EAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
R L+ + K K S + + N ++ +F + FE
Sbjct: 184 LVCRDLDLDPKKFPPKSFSAKISN-------------LKNELI--DEETFADQAVDGFE- 227
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
KT AE ++ Y LR NALD+ D+I +V LL FP+V
Sbjct: 228 ----------KTLAEAYRM-----------YQARLREANALDFDDIIMTTVHLLQAFPDV 266
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-------RITIVGDDDQSIFSFNGAD 521
+ YQ ++ ++VDE+QDT+ QY+L++ L + +VGD DQSI++F GA
Sbjct: 267 AEHYQRRFRHVLVDEYQDTNHAQYTLVRELVGKGYEDLEPAELCVVGDADQSIYAFRGAT 326
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII 581
I F +D+ + I L +NYRST+ I+ AA+++I+ N R + KN+ T+ G++I
Sbjct: 327 IRNILQFEEDYPDATTILLEQNYRSTQTILSAANAVIERNESR-RPKNLWTNAGAGAQIT 385
Query: 582 IKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN 641
E + F+ D+I G A G +A+ YR +VF+ F +P+
Sbjct: 386 GYVADTEHDEAQFVADEIDRLTDAGEAKA---GDVAVFYRTNAQSRVFEEIFIRVGLPYK 442
Query: 642 -IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTI 700
+ GV FY +K VR ++A LR D+ P RR+ + ++ R ID ++
Sbjct: 443 VVGGVRFYERKEVRDVLAYLRVLANPEDNVPLRRILN---VPKRGIGDRAEAMIDALALR 499
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
K +F A + A G RS R +L +E + +V + V+ +V
Sbjct: 500 EKITFPQALRRVDEA--YGMAARSANAVKRFNVL-MEELRTIVDSGAGPAVVLEAVLERT 556
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
YL E +A D +D LQ L A +F + +EEG
Sbjct: 557 --GYLAELQASTD-------PQDETRIENLQELAAVALEFEQAR---GEEEGT------- 597
Query: 821 CINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
L F++ ++ +++ + + +TL T+H +KGLE+ +VF+ + P
Sbjct: 598 --GTLAEFLEQVALVADSDQIPDEDEEGTGVITLMTLHTAKGLEFPVVFLTGMEDGVFPH 655
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSRFLKEIP 936
+ G E +EEERRL YV +TRAR++L++ M + W PSRFL+EIP
Sbjct: 656 MRAL-GQTKE----LEEERRLAYVGITRARERLYLTRSSMRSAWGQPSYNPPSRFLEEIP 710
Query: 937 -HHL 939
HL
Sbjct: 711 GQHL 714
>gi|150388771|ref|YP_001318820.1| ATP-dependent DNA helicase PcrA [Alkaliphilus metalliredigens QYMF]
gi|149948633|gb|ABR47161.1| ATP-dependent DNA helicase PcrA [Alkaliphilus metalliredigens QYMF]
Length = 724
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 230/738 (31%), Positives = 354/738 (47%), Gaps = 121/738 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LND+Q A PLL++AG GSGK G+SP +IL++TFT
Sbjct: 3 LTHLNDEQ-RKAVEHTKGPLLLLAGAGSGKTRVLTHRIAYLVEELGVSPYHILSITFTNK 61
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++RI ++G ++L +STFHS +++ RS +KL + F+IY Q+ I
Sbjct: 62 AAREMKERIHQLLGDG-FRDLWVSTFHSSCVRILRSEIDKLGYSKNFVIYDTTDQQIVIK 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
E ++ L D RA L + + +L +F+++
Sbjct: 121 ECLK----------------KLNLDDKMYQPRAVLAEIGK------AKDQLMGPKEFQQE 158
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
G+ +FRK E A I E Y LRS NALD+ DLI +V+L T P V
Sbjct: 159 ------VQGR---DFRK---EKIATIYEMYQNKLRSNNALDFDDLIMKTVQLFLTHPPVL 206
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDSF 528
YQ+ +K I+VDEFQDT+ QY+L+ +LA H+ + +VGDDDQSI+ + GADI F
Sbjct: 207 AFYQEKFKYILVDEFQDTNMAQYTLVSLLAKKHHNLCVVGDDDQSIYGWRGADIRNILGF 266
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KDF N + I+L +NYRST+ I+ AA++++ N +R K + TDN G I + NE
Sbjct: 267 EKDFPNTRVIKLEQNYRSTKNILSAANAVVAKNSERKD-KKLWTDNIPGEVIQYYKASNE 325
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ +I + I E SY AILYR + + ++ IP+ + G F
Sbjct: 326 YDEAGYITNAIDEMKE---TETRSYNDFAILYRTNAQSRTLEELLMKKAIPYRLLGGTRF 382
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVF---KAFLLLEKEEKKRVIDHIDKISTIRKCS 704
Y +K +R I+A L+ DD +R+ K + L EK + H D+ R+ S
Sbjct: 383 YDRKEIRDILAYLKIIENPVDDVNVKRIINVPKRGIGLRSIEKLEI--HADE----RESS 436
Query: 705 FISAACDI-FGAKISGTFK--RSQLTQGRKVLLTLEMISKL--VRREPSISAVITSVANM 759
F +A D+ +S K S+ TQ MI+ L ++ E ++ ++
Sbjct: 437 FFNALLDVELMPDLSTRVKVQSSKFTQ---------MITSLRDIKDEVPVTTIV------ 481
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLS-TKFTAAKEEGNVDQDK 818
K + +Q +D +L ED + + ++ +FLS TK D D+
Sbjct: 482 ---KEIYKQSEYID----ELHKEDT---VEAKGRIENLEEFLSLTK----------DFDE 521
Query: 819 KGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
I L+ F+ S E ++E +V L T+H +KGLE+ +VF+ E P
Sbjct: 522 NAEIKTLEEFLARTS---LETSLDLMDEDEAAVVLMTLHSAKGLEFPVVFIPGMEEGIFP 578
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQP---SRFLKEI 935
+++ + + EEERRL YV +TRA +KL++ + MM + SRF++EI
Sbjct: 579 ------SSMSLQENNEEEERRLCYVGITRAMEKLYLSHAMMRTLYGRTNANAVSRFIREI 632
Query: 936 PHHLREVQAEQSVQDQHE 953
P L + E+ Q E
Sbjct: 633 PEEL--ITMEKPYNRQQE 648
>gi|420161127|ref|ZP_14667898.1| ATP-dependent DNA helicase PcrA [Weissella koreensis KCTC 3621]
gi|394745877|gb|EJF34695.1| ATP-dependent DNA helicase PcrA [Weissella koreensis KCTC 3621]
Length = 769
Score = 244 bits (624), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 198/725 (27%), Positives = 338/725 (46%), Gaps = 114/725 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ +N QQ EA PLLI+AG GSGK ++P ILA+TFT
Sbjct: 6 LRGMNPQQAEAVTT-TEGPLLIMAGAGSGKTRVLTHRVAHLIKDKNVAPWRILAITFTNK 64
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++RI ++G A + +STFH+ ++++ R +KL +F I G QR +
Sbjct: 65 AAREMKERIADLIGAEDADRVWVSTFHAMAVRILRRDIDKLGYKRDFTIIDAGTQRTLV- 123
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+L+++ + + K +L+
Sbjct: 124 --KRILKDQNVDIEKFDPRSVLS------------------------------------- 144
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILEN----YNGILRSCNALDYHDLISCSVKLLSTF 465
+ AK + +TP ++ K +++ I+ Y L ++D+ DLI +++LL
Sbjct: 145 AISNAKNAMETPVDYAKTANDLFGKIVAKAYAAYQKQLGLSQSVDFDDLIMLTIELLEQE 204
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISG 524
PEV Q YQD ++ I VDE+QDT+ QY L+Q+LA + +VGD DQSI+ + GA++
Sbjct: 205 PEVLQYYQDKFQYIHVDEYQDTNDAQYRLIQLLADGWKNLAVVGDSDQSIYGWRGANLEI 264
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+F KD++ K++ L +NYRST+ I+ AA+ +I +N R KN+ T+N G KI
Sbjct: 265 ILNFEKDYVGAKKVLLEQNYRSTQTILNAANEVIANNNGRIT-KNLWTENGDGEKITYHR 323
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
+++ + +I+ +I N Y AILYR + + A + IP+ +
Sbjct: 324 SNSDRDEAVYILGEIANQVKNEKRQ---YRDFAILYRTNAQSRGIEEALVKANIPYTMVG 380
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
G FY +K +R I+A DD ++FL + E K+ + D S I+
Sbjct: 381 GSKFYDRKEIRDILAYFSLLTNPADD-------ESFLRVVNEPKRGLGD----TSIIKLR 429
Query: 704 SFISA-ACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
+F S + A + ++ + + + + + ++ IT +A ++ +
Sbjct: 430 AFASEHNWPLLEAAANANLMNDLQSRAQNKFMDFAALMQNLIQQEQFDVSITDLARVIYK 489
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
E V +N L ++ ++L VT+ + +E
Sbjct: 490 ----ETNYVETLKASPTPENENRLENLDEFLT--VTEQFDKNYVPDEES----------- 532
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ ++D++SE +++N+VTL T+H +KGLE+ +VF+ E+ P
Sbjct: 533 --VSKYVDFMSELALVSDIDNVDEDDNNVTLMTLHAAKGLEFPVVFLVGMEESIFP---S 587
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQPSRFLKEI 935
F ++ K ++EERRL YV +TRA++KL++ LY M+ N PSRF+ EI
Sbjct: 588 FRAIIDPK--QLDEERRLAYVGITRAKEKLYLTNAYTRMLYGKMNNN----MPSRFIDEI 641
Query: 936 -PHHL 939
P +L
Sbjct: 642 SPKYL 646
>gi|371777067|ref|ZP_09483389.1| UvrD/REP helicase [Anaerophaga sp. HS1]
Length = 768
Score = 244 bits (624), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 214/730 (29%), Positives = 353/730 (48%), Gaps = 107/730 (14%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
YL+ LN+ Q +A + P LI+AG GSGK G+ P +ILA+TFT
Sbjct: 4 YLEHLNEAQRKAVV-ETEGPALIIAGAGSGKTRVLTYRIAHLISQGVPPWSILALTFTNK 62
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA E+++RI IVG+ A ++ + TFHS ++ R AE + F IY +++I
Sbjct: 63 AAREIKERISHIVGQELAAKIWMGTFHSIFARILRMEAEHINFPGTFTIYD-TTDAKSLI 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++ L+N K+ K + T G + L + A Y + +
Sbjct: 122 NSI--LKNMKL--NKEKAYKPGTILGRISSAKNDLLVPAA-------------YAQDAKR 164
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
M A A+ P + I E Y R A+D+ DL+ + L PEV
Sbjct: 165 SM--ADAAANIP---------MMPEIYERYVRECRKAGAMDFDDLLLYTNILFRDHPEVL 213
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSF 528
YQ+ ++ I+VDE+QDT+ QY +++ LA H I +VGDD QSI+SF GA I +F
Sbjct: 214 ANYQERFRYILVDEYQDTNFSQYLIIRKLAGKHKNICVVGDDAQSIYSFRGARIENILNF 273
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
R D+ +YK +L +NYRST+ IV AA+S+I+ N + + K V + N G+KI + + H+
Sbjct: 274 RNDYPDYKLFKLEQNYRSTQTIVNAANSVIEKNTGQIR-KKVFSQNDEGAKITVIQAHS- 331
Query: 589 DAQCAFII-----DKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH 643
D FI+ + L H + AILYR ++F+ A R++ IP+ I+
Sbjct: 332 DVDEGFIVANHINEMRLRHR-------YQFQDFAILYRTNAQSRIFEEALRKKNIPYKIY 384
Query: 644 G-VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRK 702
G ++FY++K ++ I+A LR + D+ +RV + K +D ++ ++
Sbjct: 385 GGLSFYQRKEIKDILAYLRLAVNPHDNEALKRVIN---YPARGIGKTTLDKLEALANHYN 441
Query: 703 CSFISAACDIFGAKI---SGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANM 759
S + + + SGT K K+ +IS + + P++SA + N
Sbjct: 442 VSLWNVLTNPGLPQAGFHSGTVK--------KLNAFTNLISGFISQVPNMSAF--DITNE 491
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST--KFTAAKEEGNVDQD 817
+ Q ++ K L++D S Q L ++ + + +F+ KEE +
Sbjct: 492 IAS-----QSGIL-----KELHQDKSHES--QTRLENLEELFNAIREFSDNKEESG---E 536
Query: 818 KKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
G ++ L+ + +++++TE + D+ N VTL TIH +KGLE+ V++ E
Sbjct: 537 NNGLVDFLQE-VSLLTDQDTE-----KPDDINKVTLMTIHSAKGLEFKTVYIVGIEEGLF 590
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKE 934
P + +E G +EEERRL YVA+TRA+++ + + + L +PSRFL E
Sbjct: 591 PSAM---ASTSEAG--LEEERRLFYVALTRAQERATLTFARSRYKFGELTFARPSRFLGE 645
Query: 935 IPHHLREVQA 944
I ++ A
Sbjct: 646 IDQSYLDISA 655
>gi|427414138|ref|ZP_18904328.1| ATP-dependent DNA helicase PcrA [Veillonella ratti ACS-216-V-Col6b]
gi|425714514|gb|EKU77517.1| ATP-dependent DNA helicase PcrA [Veillonella ratti ACS-216-V-Col6b]
Length = 731
Score = 244 bits (624), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 227/751 (30%), Positives = 349/751 (46%), Gaps = 132/751 (17%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFT 287
S LN +Q EA PLLIVAG GSGK G++P ILA+TFT
Sbjct: 2 SSLFDGLNKEQQEA-VRTTEGPLLIVAGAGSGKTRVLTYRIAHLLAQGVNPYEILAITFT 60
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEK-LERTSEFLIYGHGQQRR 346
AA EM+ R+ +VG A + +STFHSF + R + L + F IY G +
Sbjct: 61 NKAAKEMKSRVEDLVG-PMADRIWLSTFHSFCAKFLRFELDNFLGYSKNFTIYDTGDSQA 119
Query: 347 AIIEAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNK 405
I A++ L ++K + + + +D M A F M A F+S
Sbjct: 120 VIKGALKSLNLDDKYFPPGAMLSAI--SDAKNRLMMAHEFRMEARDFYS----------- 166
Query: 406 FERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+K+ D + E Y LR NALD+ DL+ +VKLL +
Sbjct: 167 -------------------QKVAD-----VYEYYERELRKNNALDFDDLLMVAVKLLQSR 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
+V Q+Y + ++ I++DE+QDT+ QY+L +LAS I +VGD DQSI+++ GADI
Sbjct: 203 EDVLQKYSNRFRYIMIDEYQDTNHAQYTLAHLLASKWQNICVVGDADQSIYAWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
F KD+ K I+L +NYRST+ I+EAA+++I +N R + K + TD G KI E
Sbjct: 263 ILDFEKDYPACKTIKLEQNYRSTKTILEAANAVIDNNEGRPE-KVLWTDKDLGPKIHHFE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF-NIH 643
+E + AFI + I A YG++AILYR + + +R +P+ +
Sbjct: 322 AQSELEEAAFISETI---AKQHDIHEVPYGNMAILYRTNAQSRALEEGLIKRGVPYVMVG 378
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
G FY +K ++ ++A L+ +F F D +S IR
Sbjct: 379 GTKFYDRKEIKDVLAYLKV------------LFNPF---------------DDLSLIR-- 409
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
I+ GA + G + ++L M+S + P+I K
Sbjct: 410 -IINVPKRSIGATTVAKLQDYARETGNSLFMSLTMLSNI----PTIKG---------KTK 455
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST--KFTAAKEEGNVDQDKKGC 821
LE+ ++ F ++ E+ ++ +L+ +L + T +L T ++E V+ +
Sbjct: 456 EKLEEFGILIFTLVAMM-ENYNVLQILESIL-EKTGYLKELEDSTDPQDEARVENIGE-L 512
Query: 822 INVLKAFIDYISERETEHFRTQ---------RHDNENSVTLTTIHQSKGLEWDIVFVAKA 872
++V K F+D + F Q ++ VTL T+H +KGLE+ IVF+A
Sbjct: 513 LSVAKVFLDENPTGTVQDFLEQVALVNDVDTYEQADSKVTLMTLHSAKGLEFPIVFLAGL 572
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFIL-----YVMMDANWQLLQ 927
E P H E+ +EEERRL YV +TRA K+L++L V N L
Sbjct: 573 EEGLFP--HSRTLMNPEE---IEEERRLCYVGITRAEKELYLLNATTRTVFGRTNGYL-- 625
Query: 928 PSRFLKEIPHHL-REVQAEQSV-QDQHENIP 956
PSRFLKEIP L E++ ++ V +D ++P
Sbjct: 626 PSRFLKEIPEGLIEELRPKRKVREDVQRHVP 656
>gi|429204085|ref|ZP_19195378.1| ATP-dependent DNA helicase [Lactobacillus saerimneri 30a]
gi|428147584|gb|EKW99807.1| ATP-dependent DNA helicase [Lactobacillus saerimneri 30a]
Length = 741
Score = 244 bits (624), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 199/717 (27%), Positives = 340/717 (47%), Gaps = 110/717 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
LQ LN++Q EA ++ PLLI+AG GSGK +P NILA+TFT
Sbjct: 6 LQGLNNKQQEA-VKSVAGPLLIMAGAGSGKTRVLTHRVAYIIEQNLANPWNILAITFTNK 64
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+ ++G+ A+++ +STFH+ +++ R +AE++ F I +QR +
Sbjct: 65 AAREMRERVDKLMGEG-AEDIWVSTFHALCVRILRRNAERIGYERAFNIASTSEQRTLV- 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+++L + + T G ++S+
Sbjct: 123 --------KRLLAALNVDSKQYTPRTILG---------------TISN------------ 147
Query: 410 GMDVAKASGKTPAEF----RKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
AK + TP EF + +E+ A + Y L A+D+ DLI +++L F
Sbjct: 148 ----AKNNMVTPEEFASNAKGPYEEVVAKVYRQYQEELHRNQAMDFDDLIMKTIELFKEF 203
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISG 524
P+V + YQ+ + I VDE+QDT+ QY L+ +LA+ R I +VGD DQSI+ + GA++
Sbjct: 204 PDVLEYYQNKFHYIHVDEYQDTNEAQYELVTLLAARYRNICVVGDADQSIYGWRGANMEN 263
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+F KD+ + ++L +NYRST+ I++AA+++I +N+ R K + TDN+ G K+
Sbjct: 264 ILNFEKDYPDATVVKLEQNYRSTKNILKAANAVIDNNINRKD-KTLWTDNAAGDKVHYYR 322
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG 644
NE+ + ++I ++ + + Y A+LYR +V + A + IP+ + G
Sbjct: 323 AGNENDEAYYVIKQVQKLRQD---QDYDYSDFAVLYRTNAQSRVIEEALLKAGIPYKLVG 379
Query: 645 V-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
FY + ++ ++A LR D +RRV + ++ +D + +T+
Sbjct: 380 AHKFYDRMEIQDVLAYLRLATNPDDSLSFRRVVN---VPKRGIGTTSVDKLADFATMNNI 436
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKL--VRREPSISAVITSVANMVP 761
+ + AA A I G QG ++L ++I+ L + E +I+ + +
Sbjct: 437 TMLEAARQAGAANIRGK------AQG-QLLAFADLIADLHDFQMEHNITELTDEILQRSG 489
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
K +LE K L + L ++ ++ VT + EE N+
Sbjct: 490 YKEMLETE--------KTLENQSRLENLEEF--KSVTAEFEKNWMPTDEESNM------- 532
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
F+D++S+ + ++ VTL T+H +KGLE+ +VF+ E PL
Sbjct: 533 ------FVDFLSDLALVSDQDDVEEDAPEVTLMTLHAAKGLEFPVVFLIGMEEGIFPL-- 584
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
G E +EEERRL YV +TRA K+L++ M+ Q+ SRF+ EI
Sbjct: 585 ---GRATEDDGELEEERRLAYVGITRAEKELYLTNAQSRMLYGRRQINPASRFITEI 638
>gi|374315116|ref|YP_005061544.1| DNA/RNA helicase [Sphaerochaeta pleomorpha str. Grapes]
gi|359350760|gb|AEV28534.1| DNA/RNA helicase, superfamily I [Sphaerochaeta pleomorpha str.
Grapes]
Length = 671
Score = 244 bits (624), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 219/718 (30%), Positives = 336/718 (46%), Gaps = 108/718 (15%)
Query: 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAA 291
+ LN +Q +AA +S PLL++AG GSGK GI SNILA+TFT AA
Sbjct: 7 KELNKEQCKAAST-LSGPLLVIAGAGSGKTRMLTFRIAHMLESGIDESNILALTFTNKAA 65
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEA 351
EM +RI S+ G K++T +TFHSF + + + + + L + F +Y
Sbjct: 66 KEMGERIKSLTG-LPLKKMTTTTFHSFGMGILKQYIQHLGFKNNFTVYD----------- 113
Query: 352 VRLLENEKILVVKRISTDMLTTDGHFG-YMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
N+++ ++K + ++ F Y ++LF S K +
Sbjct: 114 ----SNDRMALLKEVIINLDYVPDTFDLYELSNLF----------SDLKT-------KRS 152
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
+ A AS K R + E Y L++ NA+D+ DLI + L PEV
Sbjct: 153 VFAAGASDK----IRNLYSE--------YEKHLKAYNAVDFDDLIMKPLDLFEKKPEVLA 200
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDSFR 529
++ + I+VDEFQDTS QY ++++LA +R + +VGDDDQSI+S+ GA+ F
Sbjct: 201 ALRNRYTHILVDEFQDTSLSQYRIVELLAQESRNLCVVGDDDQSIYSWRGANYENLVMFE 260
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
+DF EI+L RNYRST I+EAA+ LI HN +R + K + TD+ GS I + NED
Sbjct: 261 RDFPERLEIKLERNYRSTGTILEAANKLIVHNQQRKE-KKLWTDSGKGSSISLIHPANED 319
Query: 590 AQCAFIIDKIL--EHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVA 646
+ A I ++IL N P + +L R +T F E++IP + G +
Sbjct: 320 DESAVIAEQILMAHRKENRP-----FSDFGVLVRTNSLVPTLETRFMEKEIPTQVSGGQS 374
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV-IDHIDKISTIRKCSF 705
F+ +K +R I++ L+ DD RV + RV ++ + K++ KCS
Sbjct: 375 FFDRKEIRDIVSYLKVLANQDDDINLLRVINT----PRRGIGRVTLEKMRKVADDHKCSL 430
Query: 706 ISAACDIFGAKISGTFKRS-QLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKY 764
S A + G K Q T R V + + +L + + + ++ S+ + + K
Sbjct: 431 YS-ALSLMAIATDGQIKEGMQKTIKRFVTMIDDYQQQLFEAKSNKNMILRSLIHEIGYK- 488
Query: 765 LLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINV 824
DF L E D +++ + + + L F A+ E N D N
Sbjct: 489 --------DF----LAEEHPDNENIVNFKMKGIG-ILCDMF--ARWERNPD-------NY 526
Query: 825 LKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFN 884
+ DYI+ D + V L T+H SKGLE+D VF+A + +P
Sbjct: 527 NSSIFDYINRISIAGKEDSEGDRKGKVALMTMHASKGLEFDTVFLAGIEDQYVPHAR--- 583
Query: 885 GAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQ---LLQPSRFLKEIPHHL 939
A+ + +++EERRL YVA+TRAR+ L I L PSRFL+EIP L
Sbjct: 584 -AIEDNPANIDEERRLFYVAITRARRVLVISSCERRKRGHDEILSVPSRFLEEIPKEL 640
>gi|148266336|ref|YP_001233042.1| UvrD/REP helicase [Geobacter uraniireducens Rf4]
gi|146399836|gb|ABQ28469.1| ATP-dependent DNA helicase PcrA [Geobacter uraniireducens Rf4]
Length = 744
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 212/734 (28%), Positives = 330/734 (44%), Gaps = 128/734 (17%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFT 287
K L +LN Q EA PLLI+AG GSGK + P ILA+TFT
Sbjct: 2 KLLHNLNPPQKEAVL-HGEGPLLILAGAGSGKTRVIVHRIAYLIKERSVPPWQILAVTFT 60
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EMR+R+ ++G ISTFHS ++ R L + F IY +
Sbjct: 61 NKAAGEMRERVEKLLGGGELP--LISTFHSACARILRREIHHLGYDANFAIYDDKDAEKL 118
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
+ E V L ++ KR + + SF
Sbjct: 119 LKEIVAELNLDE----KR---------------------------YPVKSFIAA------ 141
Query: 408 RDGMDVAKASGKTPAEFRKIGD---EIGAAILENYNGILRSCNALDYHDLISCSVKLLST 464
+D K +GKTP + +GD E A + Y LR CNALD+ DL+ +V+L
Sbjct: 142 ---IDECKNAGKTPEDV-PVGDFMAEKVAQVYAAYQERLRKCNALDFGDLVLLTVRLFEQ 197
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADIS 523
FPEV YQ+ ++ I VDE+QDT+ +QY L+++LA + + +VGDDDQSI+ + GADI
Sbjct: 198 FPEVLVRYQERYRWIQVDEYQDTNPVQYRLVKLLAGKRQNLCVVGDDDQSIYRWRGADIR 257
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
F +DF K ++L +NYRST+ I+ AA +++ N R + K + T+N G +I+ +
Sbjct: 258 NILDFEEDFPGVKVVKLEQNYRSTQNILAAAGAVVAKNRGR-KGKTLWTENPPGERIVYR 316
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-I 642
+E + ++ +I +H G +A+ YR +V + A IP++ +
Sbjct: 317 RLADEREEARYVCRQIEQHVRKG----GDLAGVAVFYRANAQSRVVEDAMVADGIPYHMV 372
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH--IDKISTI 700
G+ FY ++ ++ I+A L+ + D+ +R+ R I H +DKIS +
Sbjct: 373 GGMRFYARQEIKDILAYLKVLINPADEIALKRIINT--------PARGIGHATVDKISEL 424
Query: 701 ---RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVA 757
R F A + + + G+ R ++ +L E + + + S VI
Sbjct: 425 AQRRGILFYDALREAAESGLLGSGPRGKIAGFVALLEGFESMVETSSLKDLASRVILETG 484
Query: 758 NMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQD 817
V L E+R+ E D + LQ LL+ + +F +
Sbjct: 485 YAVK---LQEERS----------EEAQDRLANLQELLSALEEF----------------E 515
Query: 818 KKGCINVLKAFID---YISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
+ L AF++ IS+ E Q S TL T+H +KGLE+ +VF+ E
Sbjct: 516 RVSAERTLAAFLEQVALISDLE------QEGKGRESATLMTLHAAKGLEFPLVFMIGMEE 569
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRF 931
P E +EEERRL YV MTRA+++L++ + Q P RF
Sbjct: 570 RLFPHARSL-----EDPEQMEEERRLCYVGMTRAQERLYLTNARRRRIFGQEQYNPPCRF 624
Query: 932 LKEIPHHLREVQAE 945
L +IPH L +++ E
Sbjct: 625 LADIPHALLDMEDE 638
>gi|182436526|ref|YP_001824245.1| ATP-dependent DNA helicase [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326777148|ref|ZP_08236413.1| ATP-dependent DNA helicase PcrA [Streptomyces griseus XylebKG-1]
gi|178465042|dbj|BAG19562.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326657481|gb|EGE42327.1| ATP-dependent DNA helicase PcrA [Streptomyces griseus XylebKG-1]
Length = 813
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 216/723 (29%), Positives = 332/723 (45%), Gaps = 102/723 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN +Q AA +PLLIVAG GSGK G P ILA+TFT
Sbjct: 67 LDGLNTEQ-RAAVVHAGSPLLIVAGAGSGKTRVLTHRIAHLLAERGTHPGQILAITFTNK 125
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A + + TFHS +++ R ++KL TS F IY +R +
Sbjct: 126 AAGEMKERVEQLVGP-RANAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMA 184
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
LV + + D F SF + + + +
Sbjct: 185 -----------LVCRDLDLDPKQ--------------------FPPKSFT-AKVSNLKNE 212
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+D +G+ F K + A Y LR NALD+ D+I +V LL FP+V
Sbjct: 213 LIDEETFAGQAADGFEKTLAQAYAL----YQARLREANALDFDDIIMTTVHLLQAFPDVA 268
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQIL---ASHN----RITIVGDDDQSIFSFNGADI 522
+ Y+ ++ ++VDE+QDT+ QY+L++ L A N + +VGD DQSI++F GA I
Sbjct: 269 EHYRRRFRHVLVDEYQDTNHAQYTLVRELVGPAGENDAPAELCVVGDADQSIYAFRGATI 328
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
F +D+ + I L +NYRST+ I+ AA+++I+ N R + KN+ T+ G++I
Sbjct: 329 RNILQFEEDYPSATTILLEQNYRSTQTILSAANAVIERNESR-RPKNLWTNAGSGARITG 387
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN- 641
E + F+ D+I G A G +A+ YR +VF+ +P+
Sbjct: 388 YVADTEHDEAQFVADEIDRLTDAGDAKA---GDVAVFYRTNAQSRVFEEILIRVGLPYKV 444
Query: 642 IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
+ GV FY +K VR ++A LR D P RR+ + ++ R ID +S
Sbjct: 445 VGGVRFYERKEVRDVLAYLRVLANPEDTVPLRRILN---VPKRGIGDRAEAMIDALSMRE 501
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
K SF A + + G RS R L +E + +V + V+ +V
Sbjct: 502 KISFPQALRRV--DEAYGMAARSSNAVKRFNTL-MEELRTIVESGAGPAVVLEAVLERT- 557
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
YL E +A D +D LQ L A +F +E G D++G
Sbjct: 558 -GYLAELQASTD-------PQDETRIENLQELAAVALEF-------EQERG----DEEGA 598
Query: 822 INVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
L F++ ++ +++ + D +TL T+H +KGLE+ +VF+ + P +
Sbjct: 599 -GTLAEFLEKVALVADSDQIPDEDEDGSGVITLMTLHTAKGLEFPVVFLTGMEDGVFPHM 657
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSRFLKEIPH 937
G E +EEERRL YV +TRAR++L++ M + W PSRFL+EIP
Sbjct: 658 RAL-GQTKE----LEEERRLAYVGITRARERLYLTRAAMRSAWGQPSYNPPSRFLEEIPE 712
Query: 938 -HL 939
HL
Sbjct: 713 AHL 715
>gi|418460403|ref|ZP_13031499.1| ATP-dependent DNA helicase PcrA [Saccharomonospora azurea SZMC
14600]
gi|359739500|gb|EHK88364.1| ATP-dependent DNA helicase PcrA [Saccharomonospora azurea SZMC
14600]
Length = 779
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 217/756 (28%), Positives = 331/756 (43%), Gaps = 122/756 (16%)
Query: 240 EYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAM 284
+++ L LN Q AA PLL+VAG GSGK + P I+A+
Sbjct: 27 DHADLLDDLNPAQ-RAAVEHQGRPLLVVAGAGSGKTRVLTRRIAYLLAARDVHPGQIMAI 85
Query: 285 TFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQ 344
TFT AA+EMR+R+ +VG+ A + +STFHS ++L R A+ LE TS F IY
Sbjct: 86 TFTNKAAAEMRERVADLVGR-RAGPMWVSTFHSMCVRLLRREAKTLEMTSNFSIYDADDS 144
Query: 345 RRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYN 404
RR + R L+ L KR S L T H + L +A + S F
Sbjct: 145 RRLMTLVGRDLD----LDPKRYSARALAT--HVSNWKNELIDPDAAAQAAASDF------ 192
Query: 405 KFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLST 464
D A Y L A+D+ DLI +V+L
Sbjct: 193 ------------------------DRKAAEAYREYQRRLVQAGAMDFDDLIMRTVELFQA 228
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA---------SHNRITIVGDDDQSIF 515
FP+V + Y+ ++ ++VDE+QDT+ QY+L++ L + + + +VGD DQSI+
Sbjct: 229 FPDVAEHYRRRFRHVLVDEYQDTNHAQYTLVRELVGTEPTESGPAPSELCVVGDADQSIY 288
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I + F +DF N + I L +NYRST+ I+ AA+++I N R + K + TD
Sbjct: 289 AFRGATIRNIEEFERDFPNARSILLEQNYRSTQTILSAANAVIARNSGR-RDKRLWTDAG 347
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G +I+ NE + AF+ +I A G A Y +A+ YR +VF+ F
Sbjct: 348 DGERIVGYVADNEHDEAAFVAGEIDALADRGEA---KYSDVAVFYRTNNQSRVFEEIFIR 404
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY +K VR +A LR D RR+ K+ + D
Sbjct: 405 LGLPYRVVGGVRFYERKEVRDALAYLRVLSNPEDTVSLRRILNV-------PKRGIGDRA 457
Query: 695 DKISTI----RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSIS 750
+ + + SF +A D ++ RSQ V L ++ + +LV ++
Sbjct: 458 EAVVATHAERERISFAAALRDAVDGRVPLLNPRSQKAITAFVEL-VDGLRELVDEGTDVA 516
Query: 751 AVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKE 810
V+ +V + + LE+ + D +L N D L+ +F T E
Sbjct: 517 DVLEAVLDRTGYRAELEE-SRDPQDATRLENLDE--------LVTVAREFTEFAQTVQAE 567
Query: 811 EGNVDQDKKGCI-------------NVLKAFI---------DYISERETEHFRTQRHDNE 848
D D G + L AF+ D I + D++
Sbjct: 568 SAGQDGDDAGEVADDLDEDAGVPEPGSLPAFLERVSLVADADSIPSPDGGEDGEDGDDDQ 627
Query: 849 NSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRA 908
VTL T+H +KGLE+ +VF + P + + + EERRL YVA+TRA
Sbjct: 628 GVVTLMTVHTAKGLEYPVVFCTGWEDGVFPHLRALG-----EPKELAEERRLAYVAITRA 682
Query: 909 RKKLFILYVMMDANWQLLQP-----SRFLKEIPHHL 939
+++L++ ++ W QP SRFL EIP L
Sbjct: 683 QRRLYVSRALVRTAWG--QPMSNPASRFLDEIPEEL 716
>gi|386841981|ref|YP_006247039.1| ATP-dependent DNA helicase II [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374102282|gb|AEY91166.1| ATP-dependent DNA helicase II [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451795275|gb|AGF65324.1| ATP-dependent DNA helicase II [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 780
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 217/728 (29%), Positives = 331/728 (45%), Gaps = 112/728 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LN+ Q AA +PLLIVAG GSGK + P ILA+TFT
Sbjct: 24 LEGLNENQ-RAAVAHAGSPLLIVAGAGSGKTRVLTHRIAYLLAERNVHPGQILAITFTNK 82
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A + + TFHS +++ R ++KL TS F IY +R +
Sbjct: 83 AAGEMKERVEQLVGP-RANAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMA 141
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R LE L KR F SF + + + +
Sbjct: 142 LVCRDLE----LDPKR---------------------------FPPKSFS-AKISNLKNE 169
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+D + + F K + A Y LR NALD+ DLI +V LL FP+V
Sbjct: 170 LIDEEDFAAQATDGFEKTLAQAYAL----YQSRLREANALDFDDLIMTTVNLLRAFPDVA 225
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQIL---ASHNRIT-------------IVGDDDQS 513
+ Y+ ++ ++VDE+QDT+ QY+L++ L H+ T +VGD DQS
Sbjct: 226 EHYRRRFRHVLVDEYQDTNHAQYALVRELVGTGEHDEDTPPGEHDIPPAELCVVGDADQS 285
Query: 514 IFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTD 573
I++F GA I F +D+ N I L +NYRST+ I+ AA+++I+ N R + KN+ T+
Sbjct: 286 IYAFRGATIRNILQFEEDYPNATTILLEQNYRSTQTILSAANAVIERNESR-RPKNLWTN 344
Query: 574 NSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
G++I+ E + F+ ++I G A G +A+ YR +VF+ F
Sbjct: 345 AGQGARIVGYVADTEHDEAQFVAEEIDRLVDAGHARA---GDVAVFYRTNAQSRVFEEIF 401
Query: 634 RERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID 692
+P+ + GV FY +K VR ++A LR D P RR+ + ++ +R
Sbjct: 402 IRVGLPYKVVGGVRFYERKEVRDVLAYLRVLANPEDSVPLRRILN---VPKRGIGERAEA 458
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTL-EMISKLVRREPSISA 751
+D ++ K SF A + A G RS T K TL E + +V +
Sbjct: 459 MVDALAQREKISFPQALKRVDEA--YGMAARS--TNAVKRFNTLMEDLRTIVESGAGPAT 514
Query: 752 VITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEE 811
V+ +V YL E +A D +D LQ L A +F +E
Sbjct: 515 VLEAVLERT--GYLAELQASTD-------PQDETRIENLQELAAVALEF-------EQER 558
Query: 812 GNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAK 871
G +Q L F++ ++ D + +TL T+H +KGLE+ +VF+
Sbjct: 559 GEDEQ------ATLADFLEQVALVADSDQIPDEEDGDGVITLMTLHTAKGLEFPVVFLTG 612
Query: 872 ANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQP 928
+ P + G + E +EEERRL YV +TRAR++L++ M + W P
Sbjct: 613 MEDGVFPHMRAL-GEIKE----LEEERRLAYVGITRARERLYLTRSAMRSAWGQPSYNPP 667
Query: 929 SRFLKEIP 936
SRFL+EIP
Sbjct: 668 SRFLEEIP 675
>gi|345861872|ref|ZP_08814120.1| ATP-dependent DNA helicase PcrA [Desulfosporosinus sp. OT]
gi|344325007|gb|EGW36537.1| ATP-dependent DNA helicase PcrA [Desulfosporosinus sp. OT]
Length = 754
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 217/738 (29%), Positives = 347/738 (47%), Gaps = 132/738 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
L LN Q EAA PLLI+AG GSGK GI PS ILA+TFT A
Sbjct: 4 LDDLNPVQREAA-EHKEGPLLILAGAGSGKTRVLTYRIAHLIAQGIEPSAILAITFTNKA 62
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSE-FLIYGHGQQRRAII 349
A EMR+R+ ++VG + L ++TFHS +++ R + L + F+IY G Q+ +++
Sbjct: 63 AKEMRERVTTLVG-SEGNGLWVTTFHSACVRILRREIDNLSGYNRNFVIYDTGDQQ-SLL 120
Query: 350 EAVRLLEN--EKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
+A N EK V+ ++ + +D F S+K Y F+
Sbjct: 121 KACLKEHNYDEKKFPVRSVAA--VISDAKNKLQDPDEF-----------SYKATDY--FQ 165
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ +D+ K Y L+S NALD+ D+I +V+L
Sbjct: 166 QKVVDIYK----------------------TYQKKLKSNNALDFDDIIMLTVQLFQQSDH 203
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFD 526
V++ YQD ++ I+VDE+QDT+ QY L+++LAS R + +VGDDDQS++ + GADI
Sbjct: 204 VYRYYQDKFRYIMVDEYQDTNHAQYMLIKLLASEYRNLCVVGDDDQSVYGWRGADIQNIL 263
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
F +D+ + I+L +NYRST+ I+EAA+S++++N R + K++ T+NS G ++
Sbjct: 264 DFERDYPEARVIKLEQNYRSTQKILEAANSVVKNNESRKE-KSLWTENSEGQAVVCYVGS 322
Query: 587 NEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-H 643
+E + A++ ++I L P + AILYR + + + +P+ I
Sbjct: 323 DERDEAAYVANRIRRLHELEGRP-----FNDFAILYRTNAQSRALEERLMKDTMPYRIFS 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRV------------FKAFLLLEKEEKKRVI 691
G+ FY++ ++ I+A LR D + RV + L E+ V+
Sbjct: 378 GLKFYQRMEIKDILAYLRVLYNPADQVSFARVLNVPKRGLGESSLQKVLEYANEQGMPVL 437
Query: 692 D------HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRR 745
D +I ++ST K I+ A QL QG + + R
Sbjct: 438 DAILEAEYIPELSTRAKKPLIAFA---------------QLMQGMQN----------IAR 472
Query: 746 EPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYL-LADVTDFLSTK 804
E S+SA++ + N K +LE + + L ++L++L + D + +
Sbjct: 473 ESSVSALVEEILNKTGYKAILEAENTPE--------AETRLENLLEFLSVTAEYDAKAAQ 524
Query: 805 FTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEW 864
V++D+ ++ L F++ +S Q E +V L T+H +KGLE+
Sbjct: 525 AAQNALNDGVEEDE--TVSGLSGFLEQVSLVADIDELDQ---AEEAVALMTMHSAKGLEF 579
Query: 865 DIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDA 921
+VFV + P V +EEERRL YVA+TRAR+KL++ M+
Sbjct: 580 PVVFVVGMEDGIFPSSRSLMEPV-----VLEEERRLCYVAITRAREKLYLCNTEMRMLYG 634
Query: 922 NWQLLQPSRFLKEIPHHL 939
Q QPSRFL EIP L
Sbjct: 635 KRQYNQPSRFLMEIPSDL 652
>gi|374582257|ref|ZP_09655351.1| ATP-dependent DNA helicase PcrA [Desulfosporosinus youngiae DSM
17734]
gi|374418339|gb|EHQ90774.1| ATP-dependent DNA helicase PcrA [Desulfosporosinus youngiae DSM
17734]
Length = 755
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 205/723 (28%), Positives = 346/723 (47%), Gaps = 103/723 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
L+ LN Q EAA PLLI+AG GSGK G+ PS ILA+TFT A
Sbjct: 4 LEDLNPMQREAA-EHREGPLLILAGAGSGKTRVLTYRIAHLIAQGVEPSEILAITFTNKA 62
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSE-FLIYGHGQQRRAII 349
A EMR+R+ +++G + L ++TFHS +++ R + L + F+IY G Q+ ++I
Sbjct: 63 AKEMRERVAALLG-SEGYGLWVTTFHSACVRILRRDIDNLPGYNRNFVIYDTGDQQ-SLI 120
Query: 350 EAVRLLEN--EKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
+A EN EK V+ ++ + +D F S+K Y FE
Sbjct: 121 KACLKEENYDEKKFPVRSVAA--VISDAKNKLQDPEEF-----------SYKAASY--FE 165
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ +D+ ++ Y L+S NALD+ D+I +V+L
Sbjct: 166 QKVVDIYRS----------------------YQKRLKSNNALDFDDIIMLTVQLFQQSDH 203
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFD 526
V++ YQD ++ I+VDE+QDT+ QY L+++LAS R + +VGDDDQS++ + GADI
Sbjct: 204 VYRYYQDKFRYIMVDEYQDTNHAQYRLIKLLASEYRNLCVVGDDDQSVYGWRGADIQNIL 263
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
F +D+ K I+L +NYRST+ I+ AA++++++N R + K++ T+NS G ++
Sbjct: 264 DFERDYPEAKVIKLEQNYRSTQTILSAANAVVKNNESRKE-KSLWTENSEGQSVVCYVGS 322
Query: 587 NEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-H 643
+E + ++++++I L P Y AILYR + + F + IP+ +
Sbjct: 323 DERDEASYVVNRIQRLHELEGRP-----YNDFAILYRTNAQSRALEERFMKEGIPYRVFS 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLL-LEKEEKKRVIDHIDKISTIRK 702
G+ FY++ ++ I+A LR D + RV L ++V+++ D+
Sbjct: 378 GLKFYQRMEIKDILAYLRVLYNPADQVSFARVLNVPKRGLGDTTLQKVLEYADE------ 431
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLV---RREPSISAVITSVANM 759
+ A + + T+ +K L+ + + + +S ++ + N
Sbjct: 432 -----QGMPVLDAVLEAEYIPELSTRAKKPLIAFAHLMQGLASFAEGARVSDLVEEILNK 486
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
K +LE + + L++++++L VT K A + D ++
Sbjct: 487 TGYKGILEAENTPE--------AETRLQNLMEFL--SVTSEYDDKAAQAAQNALNDGVEE 536
Query: 820 GCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
+ L F++ +S Q E +V L T+H +KGLE+ ++FV + P
Sbjct: 537 ETVPGLSGFLEQVSLVADIDELDQ---AEEAVALMTMHSAKGLEYPVIFVVGMEDGIFPS 593
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ +EEERRL YVA+TRAR+KL++ + M+ Q QPSRFL EIP
Sbjct: 594 SRSIIEPI-----LLEEERRLCYVAITRAREKLYLCHTEMRMLYGKTQYNQPSRFLMEIP 648
Query: 937 HHL 939
L
Sbjct: 649 SEL 651
>gi|333921242|ref|YP_004494823.1| ATP-dependent DNA helicase UvrD1 [Amycolicicoccus subflavus
DQS3-9A1]
gi|333483463|gb|AEF42023.1| ATP-dependent DNA helicase UvrD1 [Amycolicicoccus subflavus
DQS3-9A1]
Length = 817
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 226/744 (30%), Positives = 339/744 (45%), Gaps = 112/744 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKGI---------------SPSNILAMTFTTA 289
L LN Q EA + S PLLIVAG GSGK PS ILA+TFT
Sbjct: 36 LDGLNRHQREAVLHEGS-PLLIVAGAGSGKTAVLTRRIAYLLAERQARPSEILAITFTNK 94
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EMR+R+ +VG A + ++TFHS +++ R+ A +E S F IY RR +
Sbjct: 95 AAAEMRERVSQLVGPRAAS-MWVATFHSTCVRILRAQAGLVEGLNSNFSIYDADDSRRLL 153
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFK--LCQYNKF 406
+ LE + V+R + ML T +S+ K L +
Sbjct: 154 AMIAKDLE----IDVRRYTPRMLAT--------------------QISNLKNELIGPAQA 189
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
RD + PAE + A + Y LR NALD+ DLIS +V++L F
Sbjct: 190 ARD-------ADTDPAEVSRTV----ARVYGVYQRRLREANALDFDDLISETVRILQDFH 238
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN----------RITIVGDDDQSIFS 516
EV Y ++ ++VDE+QDT+ QY L++ L + +VGD DQSI++
Sbjct: 239 EVAAYYHRRFRHVLVDEYQDTNHAQYVLVRELTGAGVNETEGVPTAELCVVGDADQSIYA 298
Query: 517 FNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSH 576
F GA I F +DF + + I L +NYRST+ I+ AA+++I N R + K + TD+
Sbjct: 299 FRGATIRNIVEFERDFPDARTILLEQNYRSTQTILSAANAVISKNSGR-RPKRLWTDSGD 357
Query: 577 GSKIIIKECHNEDAQCAFI---IDKILEHAS--NGPASICSYGSIAILYRRQVSGKVFQT 631
G I NE + F+ ID++ S +G A Y IA+ YR S + F+
Sbjct: 358 GESITGYVADNEHDEATFVASEIDRLTGSGSIGSGVAGDIKYSDIAVFYRTNNSSRAFEE 417
Query: 632 AFRERKIPFNIHG-VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV 690
F +P+ + G V FY +K VR I+A LR D RR+ ++ +
Sbjct: 418 VFIRHGLPYKVVGSVRFYERKEVRDIVAYLRVLANPDDTVSLRRILNT-------PRRGI 470
Query: 691 IDHIDKISTI----RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRRE 746
D + + R+ SF A D + R+Q V L + L RE
Sbjct: 471 GDRAEACVAVHAEQREISFAEALRDAAEGTVPLLGTRAQRCIASFVELLDTLRQPLTARE 530
Query: 747 PS---ISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST 803
P+ + +I + +M Y E A D G L+ N+L SV A+ ++
Sbjct: 531 PADLDVGKLIDGILSMT--GYRKELEASNDPQDGSRLDNLNELVSVGHEFSAEAAQLIA- 587
Query: 804 KFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIHQSKGL 862
+G+ + L+AF++ ++ Q D++ VTL T+H +KGL
Sbjct: 588 -------DGHEPAEGDPVPGSLEAFLERVALVADSD---QVPDSDAGVVTLMTLHTAKGL 637
Query: 863 EWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDAN 922
E+ +VF+ + + P + G +E + EERRL YV +TRAR++L++ + A
Sbjct: 638 EFPVVFLTGWEDGQFPHMRAL-GDPDE----LSEERRLAYVGITRARRRLYLSRAVTRAA 692
Query: 923 WQLLQP-----SRFLKEIPHHLRE 941
W QP SRFL+EIP L E
Sbjct: 693 WG--QPVSNPESRFLQEIPAELLE 714
>gi|284992801|ref|YP_003411355.1| ATP-dependent DNA helicase PcrA [Geodermatophilus obscurus DSM
43160]
gi|284066046|gb|ADB76984.1| ATP-dependent DNA helicase PcrA [Geodermatophilus obscurus DSM
43160]
Length = 765
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 217/756 (28%), Positives = 346/756 (45%), Gaps = 130/756 (17%)
Query: 219 MKSSMEKTDTIQTIKTQNMPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---- 274
++ ++ T ++Q + ++ E + L LN Q +A + S PLLIVAG GSGK
Sbjct: 4 VQQALPGTASLQRSASGSVGRELDRMLAGLNGPQRQAVVHEGS-PLLIVAGAGSGKTRVL 62
Query: 275 -----------GISPSNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLC 323
G+ P +LA+TFT AA EM++R+ ++VG A+ + +STFHS +++
Sbjct: 63 THRIAYLLGARGVQPGEVLAITFTNKAAGEMKERVAALVGP-RARAMWVSTFHSMCVRIL 121
Query: 324 RSHAEKLERTSEFLIYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRAS 383
R+ A KL S F IY G ++VRL+ +V + + D G
Sbjct: 122 RAEAAKLGLKSSFTIYDQG-------DSVRLM----TMVARDLDLDAKRYPGR------- 163
Query: 384 LFMMNAMLFFSMSSFKLCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGIL 443
S+++ Q + + + +D S +T E K+ E A L Y L
Sbjct: 164 ----------SLAA----QVSNLKNELVDEESFSPQTAPE--KVLKE--AYTL--YQRRL 203
Query: 444 RSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR 503
R +A+D+ DLI +V LL FP+V + Y+ ++ ++VDE+QDT+ QY L++ L
Sbjct: 204 REAHAMDFDDLIMTTVHLLQAFPDVAEHYRRRFRHVLVDEYQDTNHAQYVLVRELVGTGE 263
Query: 504 -------ITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASS 556
+ +VGD DQSI++F GA I D F +D+ I L +NYRST+ I++AA+
Sbjct: 264 GPVPPAELCVVGDADQSIYAFRGATIRNIDEFERDYPQATTILLEQNYRSTQRILKAANQ 323
Query: 557 LIQHNVKRCQLKNVQTDNSHGSKI---IIKECHNEDAQCAFIIDKILEHASNGPASICSY 613
+I N R + KN+ TD G I + + H+E A A ID +++ P
Sbjct: 324 VIAKNTGR-RPKNLWTDAGDGELIEGYVAENEHDEAAWVAEQIDALVDEGEARPK----- 377
Query: 614 GSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPY 672
IA+ YR + +VF+ F +P+ + GV FY +K VR +A L+ D
Sbjct: 378 -DIAVFYRTNNASRVFEEVFIRVGMPYKVVGGVRFYERKEVRDALAYLKLVANPADVVSL 436
Query: 673 RRVF---------KAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKISGTFKR 723
RR+ KA +E + + I S +R+CS ++ T
Sbjct: 437 RRIINVPKRGIGDKAEGCIESFADR---ERIAFGSALRRCSEVT------------TLAP 481
Query: 724 SQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNED 783
L ++ + LE +L +A++ S+ + YL E +A D ++
Sbjct: 482 RSLKAVQEFVALLEEFEQLAETGSGPAALLESILDRT--GYLAELQASTDPQDEGRVDNL 539
Query: 784 NDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQ 843
N+L SV + +F AA G+V F++ +S
Sbjct: 540 NELISV------------AAEFEAANPGGSVPD-----------FLEQVSLVADADQIPV 576
Query: 844 RHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYV 903
D+ VTL T+H +KGLE+ +VF+ + P + +EEERRL YV
Sbjct: 577 AGDDAGVVTLMTLHTAKGLEFPVVFLTGMEDGVFPHLRALGDP-----RELEEERRLAYV 631
Query: 904 AMTRARKKLFILYVMMDANW---QLLQPSRFLKEIP 936
+TRAR++LFI + +W PSRFL E+P
Sbjct: 632 GITRARQRLFISRATVRTSWGQPAYNPPSRFLDELP 667
>gi|70726047|ref|YP_252961.1| ATP-depentend DNA helicase [Staphylococcus haemolyticus JCSC1435]
gi|68446771|dbj|BAE04355.1| ATP-depentend DNA helicase [Staphylococcus haemolyticus JCSC1435]
Length = 731
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 209/735 (28%), Positives = 346/735 (47%), Gaps = 121/735 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ ++N +Q EA PLLI+AG GSGK +SP NILA+TFT
Sbjct: 5 VNNMNKEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAKEMKERVEQLVGEE-AQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I KR M G ++ L
Sbjct: 123 D---VLKNENI-DSKRFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPA----EFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP E ++ A + Y L ALD+ DLI +++L
Sbjct: 152 ---------KTPEDAINEANDFHSQMVATVYSGYQRQLTRNEALDFDDLIMKTIQLFERI 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
P+ + YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 203 PDALEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ + K I L +NYRST+ I+ AA+ +I+HN +R + K + T N+ G KI E
Sbjct: 263 ILSFEEDYPDAKTIFLEQNYRSTKTILTAANEVIKHNSER-KPKGLWTANTGGEKIKYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++H G Y +AILYR +V + F + +P+ +
Sbjct: 322 AMTERDEAEYVVREIMKHRKAGK----DYSDMAILYRTNAQSRVLEETFMKSNLPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR D+ +R+ KR I ++KI
Sbjct: 378 GQKFYDRKEIKDLLSYLRVVANSNDEISLQRIINV--------PKRGIGPSSVEKIQRYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREP--SISAVITSVANM 759
+ IS + G K+ +TQ + + E+I L++ + +S ++ + +
Sbjct: 430 NDNNISMFDALAEVDFIGLSKK--VTQ--ECIKFYELIQNLIKEQEFLEVSEIVVEILDK 485
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
+ +LE+ ++ RS L+ ++ +F+S E N +++
Sbjct: 486 SGYRDMLEREQTLES------------RSRLE----NIDEFMS---VPKDYEENTPLEEQ 526
Query: 820 GCINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
IN L + + I E + E+ VTL T+H +KGLE+ IVF+ E+
Sbjct: 527 SLINFLTDLSLVADIDEAQI----------ESGVTLMTMHSAKGLEFPIVFLMGMEESLF 576
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKE 934
P + ++ +EEERR+ YVA+TRA + L+I + M+ Q PSRFL+E
Sbjct: 577 PHIRAIK---SDDDHEMEEERRICYVAITRAEEVLYITHATSRMLYGRSQSNMPSRFLRE 633
Query: 935 IPHHLREVQAEQSVQ 949
IP L E ++Q Q
Sbjct: 634 IPEDLLETPSKQQRQ 648
>gi|383810524|ref|ZP_09966018.1| UvrD/REP helicase N-terminal domain / UvrD-like helicase C-terminal
domain multi-domain protein [Prevotella sp. oral taxon
306 str. F0472]
gi|383356892|gb|EID34382.1| UvrD/REP helicase N-terminal domain / UvrD-like helicase C-terminal
domain multi-domain protein [Prevotella sp. oral taxon
306 str. F0472]
Length = 843
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 221/733 (30%), Positives = 334/733 (45%), Gaps = 117/733 (15%)
Query: 245 LQSLNDQQLEAA--CGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTT 288
L +LN Q EA C + P L++AG GSGK G+ P NILA+TFT
Sbjct: 11 LATLNTSQREAVEYC---TGPSLVIAGAGSGKTRVLTYKIAYLLGRGLKPWNILALTFTN 67
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA EM++RI + A++L + TFHS ++ R E + F IY R +
Sbjct: 68 KAAREMKERIAQVTSLGEARQLYMGTFHSIFARILRREGEVIGFNGNFTIYDEADSRSLL 127
Query: 349 IEAVRLLE-NEKILVVKRI------STDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
++ L+ N+KI + + + L T + RA++
Sbjct: 128 KNIIKALDLNDKIYKPATVHNVISNAKNHLITASEYAEDRAAI----------------- 170
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
ERD S K PA + I + Y R NA+D+ D++ + L
Sbjct: 171 -----ERD------RSAKMPAI---------SMIYKAYEARCRQANAMDFDDILLYTYIL 210
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGA 520
EV +Y ++ I+VDE+QDT+ Q S++ LA H R+ +VGDD QSI+SF GA
Sbjct: 211 FRDHQEVRNKYGKQFEYILVDEYQDTNYAQVSIISQLAEIHRRVCVVGDDYQSIYSFRGA 270
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
+I F+ F K +L RNYRST+ IV+AA+SL++HN ++ KNV + G K+
Sbjct: 271 NIDNILDFKNKFDEAKLFKLERNYRSTQLIVQAANSLMKHNERQIP-KNVYSKEDEGDKV 329
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
+ K C++ D + A ++ K L+ + C Y + AILYR + F+ FR + IP+
Sbjct: 330 LYKPCYS-DREEAMVVAKELKRIKH--MDDCDYSNFAILYRTNAQSRAFEDEFRSQGIPY 386
Query: 641 N-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIST 699
I G++FY++K ++ IIA R D+ +RR+ R I +T
Sbjct: 387 KIIGGLSFYQRKEIKDIIAYFRLVTNPNDEEAFRRIINY--------PTRGIGD----AT 434
Query: 700 IRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANM 759
++K I + G + T + +T G V ++KL IS I VA
Sbjct: 435 VKK---IIDCAQLNGVSLWETIMDT-VTHGLNV--NKGTMTKLFTFRALISEFIKDVAQT 488
Query: 760 VPQKYLLEQRAVVDFDGGK----LLNEDNDL--RSVLQYLLADVTDFLSTKFTAAKEEGN 813
Y L + +++ G K L +E DL R L ++ + F+ T +EE
Sbjct: 489 --DAYTLGCK-IIEESGIKADLMLGSEPEDLARRENLAEFMSALQGFVDTNREEGREE-- 543
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
NV DY+ E + DN VTL TIH +KGLE+ VFV
Sbjct: 544 ---------NVY--LTDYLQEVALYTDADKEDDNAPKVTLMTIHAAKGLEFPTVFVVGLE 592
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSR 930
E P + ++ +EEERRLLYVA+TRA + + + +Q PSR
Sbjct: 593 ENIFP-----SPMSSDSKRGLEEERRLLYVAITRAERHCILTNAKNRFRFGTMQIDSPSR 647
Query: 931 FLKEIPHHLREVQ 943
FL++I L V+
Sbjct: 648 FLRDIDASLLHVE 660
>gi|338811028|ref|ZP_08623266.1| ATP-dependent DNA helicase PcrA [Acetonema longum DSM 6540]
gi|337277161|gb|EGO65560.1| ATP-dependent DNA helicase PcrA [Acetonema longum DSM 6540]
Length = 736
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 214/721 (29%), Positives = 339/721 (47%), Gaps = 108/721 (14%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFT 287
S L +LN +Q EA ++ PLLIVAG GSGK G+SP NILA+TFT
Sbjct: 7 SHILDTLNPKQREA-VEYINGPLLIVAGAGSGKTRVLTCRIAYLLDQGVSPYNILAITFT 65
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLE-RTSEFLIYGHGQQRR 346
AA+EM++R+ ++VG A A ++ +STFH+F ++ R E + F IY +
Sbjct: 66 NKAAAEMKERVHAMVGAAAA-DIWLSTFHAFCVRFLRIEIEHIAGYRRNFAIYDSSDSQT 124
Query: 347 AIIEAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNK 405
+ +++ L ++K+ + + N+++
Sbjct: 125 VVKNSLKELNLDDKMFPPASVQNAISNAK-------------NSLM-------------- 157
Query: 406 FERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
D D A+++ A +KI A + Y LR NALD+ DL+ +V+LL
Sbjct: 158 ---DATDYARSADNFHA--KKI-----AEVYAKYENSLRQNNALDFDDLLLFAVRLLENN 207
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISG 524
E+ ++YQ ++ I++DE+QDT+ QY L +L+ +H + +VGD DQSI+++ GADI
Sbjct: 208 AEIREKYQKKFRYILIDEYQDTNRAQYLLAHLLSGAHRNLCVVGDADQSIYAWRGADIRN 267
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
F KD+ K I+L +NYRST+ I++AA+++I+ N R + K + T+N+ G KI
Sbjct: 268 IMDFEKDYPEAKVIKLEQNYRSTQVILDAANAVIERNNNR-KPKALWTENAQGEKIAYYL 326
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-H 643
+E + F+ D I+ SYG IA+LYR +V + AF + IP+ I
Sbjct: 327 ARDERDEARFVADTIMRL---NMVYRHSYGKIAVLYRTNAQSRVIEDAFMQYGIPYTIVG 383
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
G+ FY +K ++ ++A LR D R+ + + + + + +
Sbjct: 384 GLKFYDRKEIKDMLAYLRVIANPRDSVSLLRIIN---VPRRGVGDTTLGRLQQYAAEHDM 440
Query: 704 SFISAACDIFGAK-ISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S A + +SG K S LE +S L+ ++A P
Sbjct: 441 SLFDAVSNAEAVPGLSGRVKNS-----------LESLSTLIFS-------FMALAQSTPV 482
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST-KFTAAKEEGNVDQDKKGC 821
LLE+ + D G L +++ Q + ++ + LS K AA E GN
Sbjct: 483 YTLLEK---LLQDSGYLAELESEGTPEAQTRIENLKELLSVAKQFAATESGN-------- 531
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
A D++S+ + VTL T+H +KGLE+ VF+A E P
Sbjct: 532 -----ALEDFLSQVALVSDIDAADSSGEKVTLMTLHSAKGLEFPFVFLAGMEEGLFPHSR 586
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHH 938
+NE T +EEERRL YV +TRA+ +L+I + + N PSRFL EIP
Sbjct: 587 TL---LNE--TEIEEERRLCYVGITRAQHQLYISHAERRTIYGNTVCYPPSRFLGEIPRQ 641
Query: 939 L 939
L
Sbjct: 642 L 642
>gi|375098905|ref|ZP_09745168.1| ATP-dependent DNA helicase PcrA [Saccharomonospora cyanea NA-134]
gi|374659637|gb|EHR59515.1| ATP-dependent DNA helicase PcrA [Saccharomonospora cyanea NA-134]
Length = 826
Score = 244 bits (622), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 217/744 (29%), Positives = 338/744 (45%), Gaps = 109/744 (14%)
Query: 238 PDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNIL 282
P +++ L LN Q AA PLL+VAG GSGK + P IL
Sbjct: 34 PATHAELLDDLNPAQ-RAAVEHQGRPLLVVAGAGSGKTRVLTRRIAYLLAARDVHPGQIL 92
Query: 283 AMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHG 342
A+TFT AA+EMRDR+ +VG+ A + +STFHS ++L R A+ LE TS F IY
Sbjct: 93 AITFTNKAAAEMRDRVADLVGR-RAGAMWVSTFHSMCVRLLRREAKTLEMTSSFSIYDAD 151
Query: 343 QQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQ 402
RR + R L+ L KR S LTT +S++K
Sbjct: 152 DSRRLMTLVGRDLD----LDPKRYSARALTT--------------------HVSNWKNEL 187
Query: 403 YNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLL 462
+ + + + +R+ Y L A+D+ DLI +V+L
Sbjct: 188 VDPDAAADVAASDFDRRAAEAYRE------------YQRRLAQAGAMDFDDLIMRTVELF 235
Query: 463 STFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA---------SHNRITIVGDDDQS 513
FP+V + Y+ ++ ++VDE+QDT+ QY+L++ L + + + +VGD DQS
Sbjct: 236 QAFPDVAEHYRRRFRHVLVDEYQDTNHAQYTLVRELVGTAPTETGVAPSELCVVGDADQS 295
Query: 514 IFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTD 573
I++F GA I + F +DF + + I L +NYRST+ I+ AA+++I N R K + TD
Sbjct: 296 IYAFRGATIRNIEEFERDFPDARTILLEQNYRSTQTILSAANAVIARNPGRRD-KRLWTD 354
Query: 574 NSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
G +I+ NE + AF+ +I A G A Y +A+ YR +VF+ F
Sbjct: 355 AGDGERIVGYVADNEHDEAAFVAGEIDALADRGEA---KYSDVAVFYRTNNQSRVFEEIF 411
Query: 634 RERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID 692
+P+ + GV FY +K VR +A LR D RR+ K+ + D
Sbjct: 412 IRLGLPYRVVGGVRFYERKEVRDALAYLRLLANPDDTVSLRRILNV-------PKRGIGD 464
Query: 693 HIDKISTI----RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPS 748
+ + + SF +A D ++ RSQ V L ++ + +LV
Sbjct: 465 RAEAVVATHAERERVSFAAALRDAVEGRVPLLNTRSQKAISGFVQL-VDGLRELVAEGAD 523
Query: 749 ISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAA 808
++ V+ +V + + LE+ D +L N D L + + T+F T A
Sbjct: 524 VAEVLEAVLDRTGYRAELEESKDPQ-DASRLENLDE-----LVTVAREFTEFAQT-VAAE 576
Query: 809 KEEGNVDQDKKGCINVLKAFIDYIS--------ERETEHFRTQRHDNENSVTLTTIHQSK 860
+ + D + G L AF++ +S D++ VTL T+H +K
Sbjct: 577 SDTEDADVPEPGS---LPAFLERVSLVADADSIPSPDGGDDEDGEDDQGVVTLMTVHTAK 633
Query: 861 GLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD 920
GLE+ +VF + P + A+ E + EERRL YVA+TRA+++L++ ++
Sbjct: 634 GLEYPVVFCTGWEDGVFPHLR----ALGEP-KELAEERRLAYVAITRAQRRLYVSRALVR 688
Query: 921 ANWQLLQP-----SRFLKEIPHHL 939
W QP SRFL EIP L
Sbjct: 689 TAWG--QPMSNPASRFLDEIPEEL 710
>gi|336173985|ref|YP_004581123.1| UvrD/REP helicase [Lacinutrix sp. 5H-3-7-4]
gi|334728557|gb|AEH02695.1| UvrD/REP helicase [Lacinutrix sp. 5H-3-7-4]
Length = 779
Score = 244 bits (622), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 214/724 (29%), Positives = 326/724 (45%), Gaps = 112/724 (15%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTT 288
KYL LN+ QL A P++++AG GSGK G+ NILA+TFT
Sbjct: 3 KYLSQLNEAQL-APTIQKDGPMIVIAGAGSGKTRVLTYRIAYLMNQGVDSFNILALTFTN 61
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA EM+ RI IVG AK L + TFHS ++ R L S F IY ++ +
Sbjct: 62 KAAKEMKGRIAEIVGDGEAKNLWMGTFHSVFAKILRFEGHHLGFPSNFTIYDTQDSQKLL 121
Query: 349 IEAVRLLENEKIL-----VVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQY 403
++ + EK + V RIS+ + SL + A
Sbjct: 122 GSIIKEMGLEKDVYKTKQVYSRISS-----------YKNSLITVKAY------------- 157
Query: 404 NKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
F+ + A A + P K+G+ I Y A+D+ DL+ + +LL+
Sbjct: 158 --FKNPELMEADAMARRP----KMGE-----IYAEYVNRCFKAGAMDFDDLLLRTNELLT 206
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADI 522
FP V +YQD ++ I+VDE+QDT+ QY +++ LA I +VGDD QSI++F GA+I
Sbjct: 207 RFPAVLAKYQDKFRYILVDEYQDTNHSQYLIVRALADRFQNICVVGDDAQSIYAFRGANI 266
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
+ +F+KD+ N K RL +NYRST+ IV AA+S+I HN + K V T N G K+ +
Sbjct: 267 NNILNFQKDYDNVKLYRLEQNYRSTKNIVGAANSVIDHNQTKLD-KVVWTANDDGPKVKV 325
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI 642
+ + F+ I E N + A+LYR + + A R+R IP+ I
Sbjct: 326 NRSLTDGDEGRFVASTIWEEKMNNQLQNSDF---AVLYRTNAQSRAIEDALRKRDIPYRI 382
Query: 643 HG-VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
+G ++FY++K ++ + A LR L D+ E KRVI++ +
Sbjct: 383 YGGLSFYQRKEIKDVTAYLRLVLNTSDE---------------EALKRVINYPARGIGQT 427
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITS--VANM 759
+ A + G I F+ + K+ + +KL +I S V N
Sbjct: 428 TIDRLIVAANATGKTI---FEVLKEIDSIKININGGTRNKL----KDFVTLIESYQVMNQ 480
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQY-----LLADVTDFLSTKFTAAKEEGNV 814
+ L + + N+D VL+ LL + DF+ + A GN
Sbjct: 481 TANAFDLAEHITKSSGLIREFNKDGTPEGVLRLENVEELLNGIKDFVEGQIEVADSTGN- 539
Query: 815 DQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
L F++ ++ + D N V L TIH +KGLE++ VF+ E
Sbjct: 540 ----------LAEFLEDVAL--ATDLDGDKGD-PNHVALMTIHLAKGLEFNHVFIVGLEE 586
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRF 931
P N + +EEERRL YVA+TRA K+ ++ Y + W L +PSRF
Sbjct: 587 DLFPSAMSMNTR-----SELEEERRLFYVALTRAEKQAYLTYALSRYRWGKLIDSEPSRF 641
Query: 932 LKEI 935
++EI
Sbjct: 642 IEEI 645
>gi|325955681|ref|YP_004239341.1| UvrD/REP helicase [Weeksella virosa DSM 16922]
gi|323438299|gb|ADX68763.1| UvrD/REP helicase [Weeksella virosa DSM 16922]
Length = 772
Score = 244 bits (622), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 209/745 (28%), Positives = 352/745 (47%), Gaps = 139/745 (18%)
Query: 244 YLQSLNDQQ---LEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTF 286
YL+ LN+ Q +EA G P++I+AG GSGK G+ P NIL++TF
Sbjct: 4 YLEQLNEPQRLAVEATEG----PVMIIAGAGSGKTRVLTYRIAHLMNKGVDPFNILSLTF 59
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR 346
T AA EM++RI S+VG + AK L + TFHS ++ R+ A L S F IY
Sbjct: 60 TNKAAREMKERISSVVGASEAKNLWMGTFHSVFARILRTEAPLLGYPSNFTIYDQQDAVS 119
Query: 347 AIIEAVRLLENEKIL-----VVKRIS---TDMLTTDGHFGYMRASLFMMNAMLFFSMSSF 398
+ + + L+ +K + V+ RIS +++T +F N L
Sbjct: 120 VMSKVINELQLDKDIYKPKQVLNRISQFKNNLITVRAYFN---------NPQLI------ 164
Query: 399 KLCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCS 458
T A ++GD A + Y A+D+ DL+ +
Sbjct: 165 ------------------EADTEAMKPRMGDIYKAYVDRCY-----KSGAMDFDDLLLRT 201
Query: 459 VKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSF 517
++L+ FPEV +YQD ++ I+VDE+QDT+ QY +++ LAS + + +VGDD QSI++F
Sbjct: 202 NEILTCFPEVLAKYQDRFRYIMVDEYQDTNHSQYLIVKALASRYENVCVVGDDAQSIYAF 261
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GA+I SF+KD+ + K L +NYRST+ IV AA+ LI HN + + KNV TDN G
Sbjct: 262 RGANIRNILSFQKDYPDAKVFPLEQNYRSTKIIVGAANQLIAHNQDQLK-KNVWTDNEEG 320
Query: 578 SKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERK 637
KI + ++ + +I +I E + + + AILYR + + A R++
Sbjct: 321 DKITVYRALSDADEARYIASRIFETQMSEQLPLSDF---AILYRTNAQSRALEEALRKKG 377
Query: 638 IPFNIHG-VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDK 696
IP+ + G ++FY++K ++ +++ Y R+ +I+ D+
Sbjct: 378 IPYRVFGGISFYQRKEIKDMVS-------------YMRL--------------LINQNDE 410
Query: 697 ISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSV 756
+ +R ++ + T + L + + +++ + P+IS + T+
Sbjct: 411 EALLRVINYPARGIG------QTTINKLLLAANQYNIHIFQLLENIQFYAPNIS-INTAT 463
Query: 757 ANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVD 815
AN + ++ +R +L+ + +D+ V L A T FLST EG +
Sbjct: 464 ANKLNDFAVMIKRF-------QLMLQTHDVYEVTMEL-AKSTKFLSTLKEDDTPEGISRL 515
Query: 816 QDKKGCINVLKAFID--------------YISERETEHFRTQRHDNENSVTLTTIHQSKG 861
++ + +N ++ ++D ++ +D+ V+L T+H +KG
Sbjct: 516 ENVQELLNSIQGYVDEQKQLEDGDPSLAGFLENIALATDADTDNDDTEKVSLMTVHLAKG 575
Query: 862 LEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDA 921
LE+ VF+A E P + N +EEERRL YVA+TRA K ++ Y +
Sbjct: 576 LEFPHVFIAGLEENLFPSMMNLNTR-----QDLEEERRLFYVALTRAEKNAYLTYSVSRF 630
Query: 922 NWQLL---QPSRFLKEI-PHHLREV 942
W + +PSRFL+EI +HL+ +
Sbjct: 631 RWGKIIDSEPSRFLEEIDDNHLQWI 655
>gi|242371786|ref|ZP_04817360.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
M23864:W1]
gi|242350487|gb|EES42088.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
M23864:W1]
Length = 729
Score = 244 bits (622), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 212/727 (29%), Positives = 344/727 (47%), Gaps = 121/727 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++++N +Q EA PLLI+AG GSGK +SP NILA+TFT
Sbjct: 5 VKNMNTEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAKEMKQRVEQLVGEE-AQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I KR M G ++ L
Sbjct: 123 D---VLKNENI-DSKRFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP + +K + ++ A + + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
P+ + YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 203 PDALEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ K I L +NYRST+ I+ AA+ +I++N +R + K + T N+ G KI E
Sbjct: 263 ILSFEEDYPEAKTIFLEQNYRSTKNILNAANEVIKNNSER-KPKGLWTANTGGDKIQYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++H NG Y +AILYR +V + F + IP+ +
Sbjct: 322 AMTERDEAEYVVREIMKHQRNGK----KYSDMAILYRTNAQSRVLEETFMKSNIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR I ++KI T
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINV--------PKRGIGPSSVEKIQTYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREP--SISAVITSVANM 759
+ IS + G K+ +TQ + + E I+ L++ + IS ++ V
Sbjct: 430 VQNQISMFDALGEVDFIGLSKK--VTQ--ECINFYETITNLIKEQEFLEISDIVDEVLQK 485
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
+ +LE+ ++ RS L+ ++ +F+S E N +++
Sbjct: 486 SGYRDMLEREQTLES------------RSRLE----NLDEFMS---VPKDYEENTPLEEQ 526
Query: 820 GCINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
IN L + + I E D ++ VTL T+H +KGLE+ IVF+ E+
Sbjct: 527 SLINFLTDLSLVADIDE----------ADTQSGVTLMTMHSAKGLEFPIVFIMGMEESLF 576
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKE 934
P + ++ +EEERR+ YVA+TRA + L+I M+ Q PSRFL+E
Sbjct: 577 PHIRAIK---SDDDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLRE 633
Query: 935 IPHHLRE 941
IP L E
Sbjct: 634 IPEDLLE 640
>gi|325281708|ref|YP_004254250.1| UvrD/REP helicase [Odoribacter splanchnicus DSM 20712]
gi|324313517|gb|ADY34070.1| UvrD/REP helicase [Odoribacter splanchnicus DSM 20712]
Length = 756
Score = 244 bits (622), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 201/720 (27%), Positives = 338/720 (46%), Gaps = 94/720 (13%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
++ LN Q EA + P L++AG GSGK G+ ILA+TFT
Sbjct: 3 FINELNSSQQEAVI-NTEGPSLVIAGAGSGKTRVLTYRIAQLLSQGVPAYKILALTFTNK 61
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQR---R 346
AA EM+ RI +VG+ A L + TFHS ++ R AEKL TS + IY + +
Sbjct: 62 AAREMQKRIAELVGQEIAANLWMGTFHSIFSKILRFEAEKLGYTSSYTIYDTQDSKNMIK 121
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
AI++ ++L ++KI + ST + G + +L + + ++ SS L +
Sbjct: 122 AIVKDMKL--DDKIY---KPSTIL----GRISMAKNNLIVAQS---YAQSSRILSE---- 165
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
+GK P + I + Y + + +D+ DL+ + L FP
Sbjct: 166 --------DTAGKRP---------LLGEIYKQYQQRCKQSDTMDFDDLLLQTNILFRDFP 208
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGF 525
++ +YQ + I+VDE+QDT+ QY +++ L+ H+ I +VGDD QSI+SF GA I
Sbjct: 209 DILAKYQQKFNYILVDEYQDTNYAQYLIVKKLSDRHHNICVVGDDAQSIYSFRGARIENI 268
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
+F+ D+ YK +L +NYRST IV+AA+ +I N ++ K + N G KI +
Sbjct: 269 LNFKNDYPEYKLYKLEQNYRSTTTIVDAANCVISKNKEQIPKKTF-SQNEEGEKIKVLRA 327
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-G 644
++ + + ++I A+ Y AILYR ++ + A R+R IP+ I+ G
Sbjct: 328 LSDKEEGFQVTNEIFRLANYEQQ---EYSDFAILYRTNAQSRILEEALRKRNIPYKIYGG 384
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCS 704
+FY++K ++ ++A R T+ D+ ++R+ + +D I +I+ S
Sbjct: 385 QSFYQRKEIKDLLAYFRLTVNQNDEEAFKRIIN---YPRRGIGDSTVDKIREIAGKYHVS 441
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKY 764
+ C++ K++G F L++ +K +E + + E + A +
Sbjct: 442 LWTVLCNL--DKVAGAFNSGTLSKLQKFGSLIERFREQIANENAYDAAVI---------- 489
Query: 765 LLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINV 824
+ ++D E + +Q LL + DF T + K+G +
Sbjct: 490 IARSSGIIDDLSNDETPEGVSRKENIQELLNGIKDFSETAY------------KEGKDDK 537
Query: 825 LKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFN 884
L AF++ ++ + + ++N VTL TIH SKGLE+ VF+ E P
Sbjct: 538 LPAFLEGVALLTDQD--GDKEGDQNKVTLMTIHASKGLEFSNVFITGLEEELFPAQQCVT 595
Query: 885 GAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD-ANWQLL--QPSRFLKEIPHHLRE 941
++EEERRL YVA+TRA K+ F+ + N Q++ +PSRF+ EI E
Sbjct: 596 TPA-----ALEEERRLFYVALTRAEKRAFMSFATSRYKNGQVVSSRPSRFIGEIDQEFLE 650
>gi|260592441|ref|ZP_05857899.1| ATP-dependent DNA helicase [Prevotella veroralis F0319]
gi|260535487|gb|EEX18104.1| ATP-dependent DNA helicase [Prevotella veroralis F0319]
Length = 843
Score = 244 bits (622), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 221/733 (30%), Positives = 333/733 (45%), Gaps = 117/733 (15%)
Query: 245 LQSLNDQQLEAA--CGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTT 288
L +LN Q EA C + P L++AG GSGK G+ P NILA+TFT
Sbjct: 11 LATLNTSQREAVEYC---TGPSLVIAGAGSGKTRVLTYKIAYLLSRGLKPWNILALTFTN 67
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA EM++RI + A++L + TFHS ++ R E + F IY R +
Sbjct: 68 KAAREMKERIAQVTSLRDARQLYMGTFHSIFARILRREGEVIGFNGNFTIYDEADSRSLL 127
Query: 349 IEAVRLLE-NEKILVVKRI------STDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
++ L+ N+KI + + + L T + RA++
Sbjct: 128 KNIIKALDLNDKIYKPATVHNVISNAKNHLITASEYAEDRAAI----------------- 170
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
ERD S K PA + I + Y R NA+D+ D++ + L
Sbjct: 171 -----ERD------RSAKMPAI---------SMIYKAYEARCRQANAMDFDDILLYTYIL 210
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGA 520
EV Y + ++ I+VDE+QDT+ Q S++ LA H R+ +VGDD QSI+SF GA
Sbjct: 211 FRDHQEVRNRYGEQFEYILVDEYQDTNYAQVSIISQLAEIHRRVCVVGDDYQSIYSFRGA 270
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
+I F+ F K +L RNYRST+ IV+AA+SL++HN ++ KNV + G K+
Sbjct: 271 NIDNILDFKNKFDEAKLFKLERNYRSTQLIVQAANSLMKHNERQIP-KNVYSKEDEGDKV 329
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
+ K C++ D + A ++ K L+ + C Y + AILYR + F+ FR + IP+
Sbjct: 330 LYKPCYS-DREEAMVVAKELKRIKH--MDDCDYSNFAILYRTNAQSRAFEDEFRNQGIPY 386
Query: 641 N-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIST 699
I G++FY++K ++ IIA R D+ +RR+ R I +T
Sbjct: 387 KIIGGLSFYQRKEIKDIIAYFRLVTNPNDEEAFRRIINY--------PTRGIGD----AT 434
Query: 700 IRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANM 759
++K I + G + T +T G V ++KL IS I VA
Sbjct: 435 VKK---IIDCAQMNGVSLWETIM-DPVTHGLNV--NKGTMTKLFTFRALISEFIKDVAQT 488
Query: 760 VPQKYLLEQRAVVDFDGGK----LLNEDNDL--RSVLQYLLADVTDFLSTKFTAAKEEGN 813
Y L + +++ G K L +E DL R L ++ + F+ T +EE
Sbjct: 489 --DAYTLGCK-IIEESGIKADLMLGSEPEDLARRENLAEFMSALQGFVDTNREEGREE-- 543
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
NV DY+ E + DN VTL TIH +KGLE+ VFV
Sbjct: 544 ---------NVY--LTDYLQEVALYTDADKEDDNAPKVTLMTIHAAKGLEFPTVFVVGLE 592
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSR 930
E P + ++ +EEERRLLYVA+TRA + + + +Q PSR
Sbjct: 593 ENIFP-----SPMSSDSKRGLEEERRLLYVAITRAERHCILTNAKNRFRFGTMQIDSPSR 647
Query: 931 FLKEIPHHLREVQ 943
FL++I L V+
Sbjct: 648 FLRDIDASLLHVE 660
>gi|300782729|ref|YP_003763020.1| DNA helicase II/ATP-dependent DNA helicase [Amycolatopsis
mediterranei U32]
gi|384145948|ref|YP_005528764.1| DNA helicase II/ATP-dependent DNA helicase [Amycolatopsis
mediterranei S699]
gi|399534615|ref|YP_006547277.1| DNA helicase II/ATP-dependent DNA helicase [Amycolatopsis
mediterranei S699]
gi|299792243|gb|ADJ42618.1| DNA helicase II/ATP-dependent DNA helicase [Amycolatopsis
mediterranei U32]
gi|340524102|gb|AEK39307.1| DNA helicase II/ATP-dependent DNA helicase [Amycolatopsis
mediterranei S699]
gi|398315385|gb|AFO74332.1| DNA helicase II/ATP-dependent DNA helicase [Amycolatopsis
mediterranei S699]
Length = 804
Score = 244 bits (622), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 215/745 (28%), Positives = 335/745 (44%), Gaps = 118/745 (15%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTF 286
++ L LN Q EA PLL+VAG GSGK + P I+A+TF
Sbjct: 22 AELLDDLNPAQREAVT-HAGGPLLVVAGAGSGKTRVLTRRIAYLLGQRRVHPGEIMAITF 80
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR 346
T AA+EMR+R+ ++VG+ A + +STFHS +++ R A+ L+ +S F IY +R
Sbjct: 81 TNKAAAEMRERVAALVGR-RANAMWVSTFHSMCVRILRREAKVLDMSSSFSIYDSDDTKR 139
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
I R L+ + KR + L H + K
Sbjct: 140 LITLVARDLDIDP----KRYAARTLAV--HISNL------------------------KN 169
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
E + A A+ E R++ + G Y L NA D+ DLI +V LL TFP
Sbjct: 170 ELTDPETAAANAGNDLE-RRVAEVYG-----EYQRRLNQANAFDFDDLIMRTVSLLQTFP 223
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS---------HNRITIVGDDDQSIFSF 517
+V + Y+ ++ ++VDE+QDT+ QY+L++ LA + +VGD DQSI++F
Sbjct: 224 DVAEYYRRRFRHVLVDEYQDTNHAQYTLVRELAGTAPNEAGVEPAELVVVGDADQSIYAF 283
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GA I + F +DF N I L +NYRST+ I+ AA+++I+ N R + K + TD+ G
Sbjct: 284 RGATIRNIEEFERDFPNAHTILLEQNYRSTQTILNAANAVIERNPNR-RAKRLWTDSGDG 342
Query: 578 SKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERK 637
KI+ N+ + AF+ +I A G A Y +A+ YR +VF+ F
Sbjct: 343 EKIVGYVADNDHDEAAFVAGEIDALAEKGEA---DYSDVAVFYRTNNQSRVFEEIFIRLG 399
Query: 638 IPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDK 696
+P+ + GV FY ++ VR +IA LR D RRV K+ + D +
Sbjct: 400 LPYKVVGGVRFYERREVRDMIAYLRVLANPEDTVSLRRVLNV-------PKRGIGDRAEA 452
Query: 697 ISTI----RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV 752
+ + SF A D K+ RS G V + L+ + LV + V
Sbjct: 453 VVATHAERERISFAQALRDAVEGKVPLLNPRSVKAIGGFVAM-LDELGMLVADGAEVHDV 511
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
+ +V + + LE+ +ED + ++ L VT ++ +FT E
Sbjct: 512 LEAVLDKTGYRIELEE------------SEDPQDHTRVENLDELVT--VAREFTEITAEV 557
Query: 813 NVDQDKKGCI-------NVLKAFIDYIS------ERETEHFRTQRHDNENSVTLTTIHQS 859
D++ + + L AF++ +S + + VTL T+H +
Sbjct: 558 AADENAEPVVEDGVPAPGSLPAFLERVSLVADADSVPSPDGGEEGDGGAGVVTLMTVHTA 617
Query: 860 KGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMM 919
KGLE+ +VF + P + + EERRL YVA+TRARK+L++ +
Sbjct: 618 KGLEYPVVFCTGWEDGVFPHMRALGDP-----AELAEERRLAYVAITRARKRLYVSRAIT 672
Query: 920 DANWQLLQP-----SRFLKEIPHHL 939
+ W QP SRFL E+P L
Sbjct: 673 RSAWG--QPSMNPASRFLDELPPDL 695
>gi|260577850|ref|ZP_05845783.1| ATP-dependent helicase PcrA [Corynebacterium jeikeium ATCC 43734]
gi|258604009|gb|EEW17253.1| ATP-dependent helicase PcrA [Corynebacterium jeikeium ATCC 43734]
Length = 950
Score = 244 bits (622), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 211/754 (27%), Positives = 350/754 (46%), Gaps = 112/754 (14%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTT 288
K L+ LN QQ +A M +PLLIVAG GSGK G++P ILA+TFT
Sbjct: 131 KLLEGLNPQQRQA-VEHMGSPLLIVAGAGSGKTSVLTRRIAYLLANGVAPWQILAITFTN 189
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRA 347
AA+EMR+R+ +VG A+ + +STFHSF +++ R++A + F IY +R
Sbjct: 190 KAAAEMRERVVDMVGP-QAERMWVSTFHSFCVRVLRANAHLAPGLNTNFSIYDSDDSKRL 248
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
+ +++K S D+ F +L +S++K N+
Sbjct: 249 MT-----------MIIKDASLDL------------KEFSPRGVLNV-ISNWK----NELV 280
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ +A + +I A + + Y LR+ NA+D+ DLI V +L+ P+
Sbjct: 281 GPAGALEEAQRDSNPHTAQI-----ATLYKTYQNRLRAANAVDFDDLIGEVVAILNNNPD 335
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR----ITIVGDDDQSIFSFNGADIS 523
V + Y+ ++ I+VDE+QDT+ QY L+ LA + + +VGD DQSI++F GA I
Sbjct: 336 VREHYRRRFRHIMVDEYQDTNHAQYELVAALAGKGKAECELCVVGDADQSIYAFRGATIR 395
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
+ F +D+ + I L +NYRST+ I+ AA+++I N R + K + TD G I
Sbjct: 396 NIEEFERDYPDAHTILLEQNYRSTQKILSAANAVIDRNQGR-RPKKLWTDLGDGELIGGY 454
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-I 642
NE + FI+++I + N SYG I+I+YR + + + +P+ +
Sbjct: 455 VADNEHDEANFIVEQIDDLVDN---EGYSYGDISIMYRTNNASRAIEDVLVRSGMPYKVV 511
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRK 702
G FY ++ +R I+A L+ D RR+ + + I + + +
Sbjct: 512 GGTRFYERREIRDIVAYLKVLDNADDTVALRRIINT---PRRGIGDKAIAQVTVHAEGQG 568
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRRE---------------- 746
F +A D K++G R + + G+ LEM+ L R E
Sbjct: 569 IGFSAALGDAAAGKVAGLSARGRNSIGK----FLEMMDAL-RAETESMEMTASDGSGLGL 623
Query: 747 PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTK-- 804
P + VI++V +M K LLE+ D G L+ N+L SV + + + +
Sbjct: 624 PDLGRVISAVLDMTGYKELLEKSN--DPQDGARLDNLNELVSVGHEFSQESANLKAYEEM 681
Query: 805 -------------FTAAKEEGNVDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENS 850
+A + + + + L+AF++ +S + + D ++
Sbjct: 682 PGGGTAGSAGSSDGSAGDTADAMLTEGEAPLGSLQAFLERVSLVADADQIPA---DEQDM 738
Query: 851 VTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARK 910
VTL T+H +KGLE+ +VF+ + + P + T + EERRL YV +TRA++
Sbjct: 739 VTLMTLHTAKGLEFPVVFLTGWEDGQFPHMRALGDP-----TELAEERRLAYVGITRAKQ 793
Query: 911 KLFILYVMMDANWQLL---QPSRFLKEIPHHLRE 941
+LF+ + + W PSRFL E+P L E
Sbjct: 794 RLFLTRAITRSGWGAPVNNPPSRFLSEVPEDLME 827
>gi|350563887|ref|ZP_08932707.1| UvrD/REP helicase [Thioalkalimicrobium aerophilum AL3]
gi|349778408|gb|EGZ32764.1| UvrD/REP helicase [Thioalkalimicrobium aerophilum AL3]
Length = 727
Score = 243 bits (621), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 203/722 (28%), Positives = 336/722 (46%), Gaps = 111/722 (15%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTF 286
S L LND Q +A S L++AG GSGK G SP N+LA+TF
Sbjct: 4 SYILDGLNDAQRQAVT-LASGHGLVLAGAGSGKTRVLVHRIAWLVEVIGASPYNVLAVTF 62
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR 346
T AA EMR R+ +++G +AK +T+ TFH + QL R H + F I Q+R
Sbjct: 63 TNKAAREMRGRMEALMGP-SAKSVTMGTFHGIAYQLLRQHYQAAGLPQAFQILDSDDQKR 121
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
+VKR+ M + + + F+ N
Sbjct: 122 ---------------LVKRLLKAMNLDETQWPVKQVMAFI-----------------NGE 149
Query: 407 ERDG-----MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
+ +G +DV G P + + A+ + Y + +D+ +L+ + +L
Sbjct: 150 KEEGRRSKHVDV----GHNPY-LKTL-----VAVYQAYEQQCQQAGLVDFAELLLRAHEL 199
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGA 520
PEV YQ ++ I+VDEFQDT+++QY+ L++LA R+ +VGDDDQSI+ + GA
Sbjct: 200 WLRAPEVLAFYQQRYQHILVDEFQDTNSLQYAWLRVLAGGRGRLFVVGDDDQSIYGWRGA 259
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
+ F + F + +RL +NYRST I++AA+ LI HN +R KN+ +D G I
Sbjct: 260 KVENIRLFEQQFADVTLVRLEQNYRSTNRILQAANQLIAHNTERLG-KNLWSDGEPGEPI 318
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
+I E N+ +C ++I++I G A +AILYR +VF+ + ++P+
Sbjct: 319 LIYEAFNDLDECQYVIEQIQAWLREGGAR----EEVAILYRSNAQSRVFEQGLLQAEMPY 374
Query: 641 NIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIST 699
I+ G+ FY + ++ ++A LR + DD + RV+ L + + + + I+
Sbjct: 375 RIYGGLRFYDRAEIKDVLAYLRLVMNSADDAAFERVYN---LPTRGLGDKTMQQVRDIAR 431
Query: 700 IRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLT--LEMISKLVRREPSISAVITSVA 757
+ CS +A+ LT K L L +I++L +PS+ ++A
Sbjct: 432 DQACSMWAAS--------EWLLDHGGLTARAKGALQGFLNLITELASLQPSL-----ALA 478
Query: 758 NMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQD 817
+ V Q V D G + + D Q L ++ + ++ AA E D
Sbjct: 479 DFVLQ---------VMQDSGLQAHFEKDRSEQGQSRLENLDELVN---AAASFEKRQDLQ 526
Query: 818 KKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
G + + ++++++ E Q E+++ L T+H +KGLE+ +VF+ E
Sbjct: 527 ADGESD--HSLLNFLAQATLEAGDNQASAGESAIQLMTLHAAKGLEFPLVFMVGMEEGLF 584
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM---MDANWQLLQPSRFLKE 934
P + + + +EEERRL YV +TRA ++LF+ + N QPSRFL+E
Sbjct: 585 P-----SQSSQDDPARLEEERRLAYVGITRAERRLFMCAAQRRRLHGNEIYSQPSRFLRE 639
Query: 935 IP 936
+P
Sbjct: 640 LP 641
>gi|374996395|ref|YP_004971894.1| ATP-dependent DNA helicase PcrA [Desulfosporosinus orientis DSM
765]
gi|357214761|gb|AET69379.1| ATP-dependent DNA helicase PcrA [Desulfosporosinus orientis DSM
765]
Length = 755
Score = 243 bits (621), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 207/725 (28%), Positives = 341/725 (47%), Gaps = 106/725 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
L LN Q EAA PLLI+AG GSGK G+ PS ILA+TFT A
Sbjct: 4 LDDLNPVQREAA-EHRDGPLLILAGAGSGKTRVLTYRIAHLIAQGVEPSQILAITFTNKA 62
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSE-FLIYGHGQQRRAII 349
A EMR+R+ +++G + L ++TFHS +++ R + L + F+IY G Q+ I
Sbjct: 63 AKEMRERVTTLLG-SEGYGLWVTTFHSACVRILRREIDNLPGYNRNFVIYDTGDQQSLIK 121
Query: 350 EAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
++ + +EK V+ ++ + +D N +L S+K Y FE+
Sbjct: 122 ACLKEHDYDEKKFPVRSVAA--VISDAK-----------NKLLDPEEFSYKAAGY--FEQ 166
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
+D I Y L+S NALD+ D+I +V+L V
Sbjct: 167 KAVD----------------------IYHTYQKRLKSNNALDFDDIIMLTVQLFQQCDHV 204
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDS 527
F+ YQD ++ I+VDE+QDT+ QY +++LA R + +VGDDDQS++ + GADI
Sbjct: 205 FRYYQDKFRYIMVDEYQDTNHAQYMFIKLLAGQYRNLCVVGDDDQSVYGWRGADIQNILD 264
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F +D+ K I+L +NYRST+ I+ AA++++Q+N R + K++ T+NS G ++ +
Sbjct: 265 FERDYPEAKVIKLEQNYRSTQKILNAANAVVQNNQSRKE-KSLWTENSEGQAVVCYVGSD 323
Query: 588 EDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HG 644
E + A+++++I L P Y AILYR + + + IP+ + G
Sbjct: 324 ERDEAAYVVNRIQRLHELEGRP-----YNDFAILYRTNAQSRALEERMMKEAIPYRVFSG 378
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLL-LEKEEKKRVIDHIDKISTIRKC 703
+ FY++ ++ I+A LR D + RV L ++V+++ D+
Sbjct: 379 LKFYQRLEIKDILAYLRLLYNPADQVSFARVLNVPKRGLGNTTLEKVLEYADE------- 431
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTL-EMISKLVR--REPSISAVITSVANMV 760
+ A + + T+ +K L++ ++ L+ +E ++S ++ + N
Sbjct: 432 ----QGMPVLDAILEADYIPELSTRAKKPLISFAHLMQDLLSFAQESNVSDLVEEILNKT 487
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
+ +LE E N L L+ ++ + AA+ E + G
Sbjct: 488 GYRGILEAENT---------PEANTRLENLMEFLSVTAEYDAKAAQAAQNELPDGVEAGG 538
Query: 821 CINVLKAFIDYISERETEHFRTQRHD---NENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
+ L F++ +S T D E +V L T+H +KGLE+ +VF+ +
Sbjct: 539 SASSLSGFLEEVS------LVTDIDDLDQAEEAVALMTMHSAKGLEFPVVFLVGMEDGIF 592
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKE 934
P + +EEERRL YVA+TRAR+KL++ M+ Q QPSRFL E
Sbjct: 593 PSSRSLM-----EPAVLEEERRLCYVAITRAREKLYLCNTEMRMLYGKTQYNQPSRFLME 647
Query: 935 IPHHL 939
IP L
Sbjct: 648 IPSEL 652
>gi|262182885|ref|ZP_06042306.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
ATCC 700975]
Length = 841
Score = 243 bits (621), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 203/740 (27%), Positives = 351/740 (47%), Gaps = 96/740 (12%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LN QQ EA +PLLIVAG GSGK G++P ILA+TFT
Sbjct: 44 LEGLNPQQEEAVT-HSGSPLLIVAGAGSGKTAVLTRRIAYLMRERGVAPWQILAITFTNK 102
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EM++R+G +VG A+ + +STFHS +++ R++A+ + + F IY RR
Sbjct: 103 AAAEMKERVGQLVGP-VAERMWVSTFHSICVRILRNNAQLVPGLNTNFTIYDGDDARR-- 159
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
++ I+ DM L S ++ R
Sbjct: 160 -------------LLTMIAKDM-------------------QLDLKKYSARVLANQISNR 187
Query: 409 DGMDVAKASGKTPAEFRKIGDEIG-AAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
++ + AE K EI A++ E Y LR+ N++D+ DLI V++ + P+
Sbjct: 188 KNELISPEQARAEAERTKNPFEITVASVYEEYQRRLRAANSVDFDDLIGEVVRIFNQHPQ 247
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRIT-------IVGDDDQSIFSFNGA 520
V + Y+ +K +++DE+QDT+ QY+L+ L + +VGD DQSI++F GA
Sbjct: 248 VVEFYRRRFKHVLIDEYQDTNHAQYALVSALVGRGELPPDAPELCVVGDSDQSIYAFRGA 307
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
I F +D+ I L +NYRST+ I+ AA+++I N R + KN+ T + G +I
Sbjct: 308 TIRNIQEFERDYPQAHTILLEQNYRSTQTILNAANAVIAKNEGRRE-KNLWTAHGQGEQI 366
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
+ NE + +I +I A G A Y IA++YR + + + F IP+
Sbjct: 367 VGYVADNEHDEARYIASEIDSLADKGTA----YSDIAVMYRTNNASRALEDIFVRSGIPY 422
Query: 641 N-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAF-LLLEKEEKKRVIDHIDKIS 698
+ G FY ++ +R ++A LR D RR+ + + + ++ H + +
Sbjct: 423 KVVGGTRFYERREIRDLVAYLRIMDNPDDTVSLRRIINVPKRAIGDKAQAQIALHAENLG 482
Query: 699 TIRKCSFISAACDIFGAKISGTFKRS--------QLTQGRKVLLTLEMISKLVRREPSIS 750
SF +A D K++G R+ ++ +G + + M+++ V +P +
Sbjct: 483 ----VSFGAALRDAAAGKVAGLGTRAVNAVSKFNEMMEGVRAQIP-GMVNE-VTGQPDLG 536
Query: 751 AVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKE 810
++ ++ + + LE D G L+ N+L SV + ++ + ++ A E
Sbjct: 537 ELLNALLDATGYRAELENSN--DPQDGARLDNLNELVSVAREFSSEAANEMAF-LGADAE 593
Query: 811 EGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIHQSKGLEWDIVFV 869
E + + L+AF++ +S Q D+E+ VTL T+H +KGLE+ +VF+
Sbjct: 594 EAPELSEGEAAPGSLQAFLEKVSLVADAD---QIPDHESGVVTLMTLHTAKGLEFPVVFL 650
Query: 870 AKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW--QLLQ 927
+ + P + + EERRL YV +TRAR++L++ ++ ++W +
Sbjct: 651 TGWEDGQFPHMRSLGDP-----KELSEERRLAYVGITRAREQLYLTRAILRSSWGNPVTN 705
Query: 928 P-SRFLKEIPHHLREVQAEQ 946
P SRFL E+P L + + E+
Sbjct: 706 PASRFLAEVPEDLIDWRREE 725
>gi|392393030|ref|YP_006429632.1| ATP-dependent DNA helicase PcrA [Desulfitobacterium dehalogenans
ATCC 51507]
gi|390524108|gb|AFL99838.1| ATP-dependent DNA helicase PcrA [Desulfitobacterium dehalogenans
ATCC 51507]
Length = 755
Score = 243 bits (621), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 208/723 (28%), Positives = 340/723 (47%), Gaps = 102/723 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
L+ LN Q +A PLLI+AG GSGK G+ P NILA+TFT A
Sbjct: 4 LEDLNPVQRQA-VEHREGPLLILAGAGSGKTRVLTYRIAHLIAQGVEPWNILAITFTNKA 62
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSE-FLIYGHGQQRRAII 349
A EMR+R+ S+VG + + L ++TFHS +++ RS L S F+IY G Q I
Sbjct: 63 AQEMRERVYSLVG-SEGRGLWVATFHSACVRILRSEIGYLPGYSRSFVIYDSGDQLAVIK 121
Query: 350 EAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
++ L +EK + I + S + KL F R
Sbjct: 122 SCMKELNLDEKKFAPRAIES-----------------------VISDAKNKLLTPEDFSR 158
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D + + + E Y L + NALD+ D+I +V+L PEV
Sbjct: 159 RATDYFEQKAER--------------VYELYQKKLLANNALDFDDIIMLTVRLFRENPEV 204
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDS 527
+YQD ++ I+VDE+QDT+ QY+L+ +LA R + +VGDDDQSI+ F GAD+
Sbjct: 205 LSQYQDKFRYILVDEYQDTNHAQYALVNLLAKKYRNLCVVGDDDQSIYMFRGADVQNILD 264
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F +D+ K ++L +NYRST+ I++AA+S++Q+N +R + K++ T+N G I+ N
Sbjct: 265 FERDYPEAKTLKLEQNYRSTKSILQAANSVVQNNTERKE-KSLWTENEDGQPIVYYVADN 323
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVA 646
E + +I ++I + N + A+LYR +V + F + IP+ I G+
Sbjct: 324 EHDEARYIAERI-QRLLNVEGR--KFNDFAVLYRTNAQSRVIEERFMKEGIPYRIFSGLK 380
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLL-LEKEEKKRVIDHIDKISTIRKCSF 705
FY + ++ I+A LR D + RV L + ++++D+ ++
Sbjct: 381 FYERMEIKDILAYLRILHNPADQVSFSRVLNVPKRGLGESTLEKILDYANE--------- 431
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYL 765
+ A + + ++ +K LL + L++ +++ +SV +V + +
Sbjct: 432 --QEMPVLDAIMEADYIPELQSRAKKPLLAF---AHLMQELKALAVAESSVTKLVEE--V 484
Query: 766 LEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKF----TAAKEEGNVDQD--KK 819
L++ D N +D + L ++ +FLS A E V Q+ ++
Sbjct: 485 LKRTGYWD-------NLVSDKSPEAEARLENLREFLSVTAEYDEKADNYENVVAQEGIEE 537
Query: 820 GCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
+ L F++ +S Q D +V + TIH +KGLE+ +VF+ E P
Sbjct: 538 ALVPGLAGFLEQVSLVAQIDSLDQGDD---AVVMMTIHSAKGLEFPVVFLGGMEEGIFPS 594
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
V + EERRL YVA+TRAR++L++ Y M+ Q +PS F +EIP
Sbjct: 595 SRSMLDPV-----LLAEERRLCYVAITRARERLYLAYAQQRMLYGRTQYNRPSEFFQEIP 649
Query: 937 HHL 939
H+
Sbjct: 650 THI 652
>gi|357411641|ref|YP_004923377.1| ATP-dependent DNA helicase PcrA [Streptomyces flavogriseus ATCC
33331]
gi|320009010|gb|ADW03860.1| ATP-dependent DNA helicase PcrA [Streptomyces flavogriseus ATCC
33331]
Length = 812
Score = 243 bits (621), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 216/723 (29%), Positives = 330/723 (45%), Gaps = 102/723 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN +Q AA +PLLIVAG GSGK G+ P ILA+TFT
Sbjct: 67 LDGLNTEQ-RAAVVHAGSPLLIVAGAGSGKTRVLTHRIAHLLAERGVHPGQILAITFTNK 125
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A + + TFHS +++ R +++L TS F IY +R +
Sbjct: 126 AAGEMKERVEDLVGP-RANAMWVMTFHSACVRILRRESKRLGFTSSFSIYDAADSKRLMA 184
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R L+ L KR T + + + +
Sbjct: 185 LVCRDLD----LDPKRYPPKSFT----------------------------AKVSNLKNE 212
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+D +G+ F K + A Y LR NALD+ D+I +V LL FP+V
Sbjct: 213 LIDEETFAGQAADGFEKTLAQAYAL----YQARLREANALDFDDIIMTTVHLLQAFPDVA 268
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILA-------SHNRITIVGDDDQSIFSFNGADI 522
+ Y+ ++ ++VDE+QDT+ QY+L++ L + + +VGD DQSI++F GA I
Sbjct: 269 EHYRRRFRHVMVDEYQDTNHAQYTLVRELVGPAGEADAPGELCVVGDADQSIYAFRGATI 328
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
F +D+ + I L +NYRST+ I+ AA+++I+ N R + KN+ T+ G++I
Sbjct: 329 RNILQFEEDYPDATTIMLEQNYRSTQTILSAANAVIERNESR-RPKNLWTNAGTGTRITG 387
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN- 641
E + F+ D+I G A G +A+ YR +VF+ F +P+
Sbjct: 388 YVADTEHDEAQFVADEIDRLTDAGDAKA---GDVAVFYRTNAQSRVFEEIFIRVGLPYKV 444
Query: 642 IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
+ GV FY +K VR ++A LR D P RR+ + ++ R ID +S
Sbjct: 445 VGGVRFYERKEVRDVLAYLRVLSNPEDTVPLRRILN---VPKRGIGDRAEAMIDALSMRE 501
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
K SF A + A G RS R L +E + +V + V+ +V M
Sbjct: 502 KISFPQALRRVDEAY--GMAARSANAVKRFNTL-MEELRTIVESGAGPAVVVEAV--MER 556
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
YL E +A D + +L SV L + A+EEG
Sbjct: 557 TGYLAELQASTDPQDETRIENLQELASVA----------LEFEQERAEEEG--------- 597
Query: 822 INVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
L F++ ++ + + + D VTL T+H +KGLE+ +VF+ + P +
Sbjct: 598 AGTLAEFLEKVALVADADQIPDEDEDGSGVVTLMTLHTAKGLEFPVVFLTGMEDGVFPHM 657
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSRFLKEIP- 936
G V E +EEERRL YV +TRAR++L++ M + W PSRFL+EIP
Sbjct: 658 RAL-GQVKE----LEEERRLAYVGITRARERLYLTRAAMRSAWGQPSYNPPSRFLEEIPD 712
Query: 937 HHL 939
HL
Sbjct: 713 QHL 715
>gi|300858060|ref|YP_003783043.1| ATP-dependent DNA helicase II [Corynebacterium pseudotuberculosis
FRC41]
gi|300685514|gb|ADK28436.1| ATP-dependent DNA helicase II [Corynebacterium pseudotuberculosis
FRC41]
Length = 846
Score = 243 bits (620), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 223/755 (29%), Positives = 350/755 (46%), Gaps = 128/755 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+Q LN QQ + A +PLLIVAG GSGK G+ P ILA+TFT
Sbjct: 63 VQGLNPQQ-QQAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLMRIRGVQPGQILAITFTNK 121
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EMR+R+ +VG A + +STFHS +++ R A+ + S F IY +R +
Sbjct: 122 AAAEMRERVAHLVGP-IASRMWVSTFHSTCVRILREQAQLVAGLNSNFTIYDSDDSKRLL 180
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
++ + L +K+ + +L +S+ K N+
Sbjct: 181 A----MISKDMNLDIKKFTPRLLGA--------------------GISNLK----NELIS 212
Query: 409 DGMDVAKA-SGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
VA+A S K P E AA+ Y LR NA+D+ DLI +V++ P+
Sbjct: 213 PATAVAEAESTKNPYE------TTVAAVYVEYQRRLRQANAVDFDDLIGETVRIFKEHPQ 266
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA----SHNRITIVGDDDQSIFSFNGADIS 523
+ + Y+ ++ +++DE+QDT+ QY L+ L + + + +VGD DQSI++F GA I
Sbjct: 267 ITEYYRRRFRHVLIDEYQDTNHAQYVLIHELVGTGETASELCVVGDSDQSIYAFRGATIR 326
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
+ F +D+ N + L +NYRST+ I+ AA+S+I N R + K + T G I
Sbjct: 327 NIEEFERDYPNATTVLLEQNYRSTQTILNAANSVISQNENRRK-KKLWTALGSGDPITGY 385
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-I 642
NE + FI +I A G Y +AI+YR S + + F IP+ +
Sbjct: 386 VADNEHDEARFIAQEIDALADKG----IDYSDMAIMYRTNNSSRAVEDVFMRSGIPYKVV 441
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFK-----------AFLLLEKEE----- 686
G FY +K +R +IA LR D RR+ AFL L E
Sbjct: 442 GGTRFYERKEIRDVIAYLRLLDNPEDTVSLRRIINTPRRGIGDKAVAFLTLHSENQGVSL 501
Query: 687 KKRVIDHID-KISTI--RKCSFISAACDIF-GAKISGTFKRSQLTQGRKVLLTLEMISKL 742
++ +ID + ++S + R C+ IS ++ G + S +++T
Sbjct: 502 QQALIDASEGQVSLLGARGCNAISGFVNMMSGLRDSAAESVNEITG-------------- 547
Query: 743 VRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLS 802
P I VI + ++ K LE+ D G L+ N+L SV + ++ +
Sbjct: 548 ---MPDIGNVIAQILDITGYKAELEKSN--DPQDGARLDNLNELVSVAREFSSEAAN--- 599
Query: 803 TKFTAAKEEGN-------VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENS-VTLT 854
+ AK +G+ V + + G L+AF++ +S Q DNE VTL
Sbjct: 600 -QVAYAKMDGSELDDLAAVGEPEPGS---LQAFLERVSLVADAD---QIPDNEQGLVTLM 652
Query: 855 TIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI 914
T+H +KGLE+ +VF+ + + P + G E + EERRL YV +TRARK L+I
Sbjct: 653 TLHTAKGLEFPVVFLMGWEDGQFPHLRAL-GDPKE----LAEERRLAYVGITRARKALYI 707
Query: 915 LYVMMDANW--QLLQP-SRFLKEIPHHLREVQAEQ 946
M+ ++W + P SRFL EIP L + + E+
Sbjct: 708 TRAMLRSSWGNPVTNPASRFLTEIPQELLDWRREE 742
>gi|422343778|ref|ZP_16424705.1| ATP-dependent DNA helicase PcrA [Selenomonas noxia F0398]
gi|355378194|gb|EHG25385.1| ATP-dependent DNA helicase PcrA [Selenomonas noxia F0398]
Length = 748
Score = 243 bits (620), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 221/724 (30%), Positives = 343/724 (47%), Gaps = 110/724 (15%)
Query: 245 LQSLND-QQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
Q LN+ QQ AC + PLLIVAG GSGK + P ILA+TFT
Sbjct: 4 FQGLNEPQQRAVAC--LEGPLLIVAGAGSGKTRVLTFRIANLLEHAVPPYRILAITFTNK 61
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSE-FLIYGHGQQRRAI 348
AA EMRDR+ +++G +A+++ +STFHSF + R E L ++ F+IY + I
Sbjct: 62 AAREMRDRVDTLIGD-SARDVWLSTFHSFCARFLRMEIEHLGTYAKNFVIYDASDTKGLI 120
Query: 349 IEAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
E ++ L +EK + + + +D + F + A FF+
Sbjct: 121 RECLKELNIDEKHTAPGAVQSHI--SDAKNRLLDVKTFAVQATDFFA------------- 165
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
E A I E Y LR+ NALD+ DL+ +V+LLS E
Sbjct: 166 ----------------------EQVAKIYELYQSKLRANNALDFDDLLMLTVELLSNNEE 203
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFD 526
+ ++YQ ++ I+VDE+QDT+ QY++ ++LA H I +VGD DQSI+ + GAD+
Sbjct: 204 IREKYQKKFQYILVDEYQDTNGAQYAITKLLAEGHRNICVVGDADQSIYGWRGADMRNIL 263
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
+F +D+ I L +NYRST+ I+ AA+++I +N+ R + K++ TDN G +I+ E
Sbjct: 264 NFERDYPEATVILLEQNYRSTKNILAAANAVIDNNLTRKK-KDLWTDNPTGDPLIVYEAS 322
Query: 587 NEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG 644
E + AFI+ ++ L N YG IA+LYR + + AF IP+ + G
Sbjct: 323 TEKNEAAFIVREVERLHTMFNE-----KYGDIAVLYRTNAQSRNIEEAFYATGIPYAMVG 377
Query: 645 -VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
V FY ++ +R IIA LR D R+ KR + + K
Sbjct: 378 AVRFYDRREIRDIIAYLRVIYNPRDTLSLLRIINV--------PKRGLGQTTLGRMMEKA 429
Query: 704 S--FISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS I A++ GT +L+ KV LE + +A+I + +
Sbjct: 430 AEYRISLFELITDAQLIGTII-PKLSA--KVKFELE----------NFAALIFTYMGQLG 476
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
+ L E + + G ++D + L ++ +F+S A E ++ + G
Sbjct: 477 TRPLHEIVEDIIEESGYAAALEDDTKEDNHDRLENLREFIS---VAKNFEDGAEEGENGL 533
Query: 822 INVLKAFIDYISE-RETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
+ L A I IS+ ETE ++ +VTL T H +KGLE+ VF+A E P
Sbjct: 534 EDFL-AQISLISDVDETEQ-------SDGNVTLMTFHAAKGLEFPTVFMAGMEEGLFP-- 583
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPH 937
+ T +EEERR YV +TRA ++L++ Y + ++ +PSRFL EIP
Sbjct: 584 ---HSRTLLDDTEIEEERRTCYVGITRAERRLYLTYARQRTIYGRTEMSRPSRFLTEIPE 640
Query: 938 HLRE 941
L E
Sbjct: 641 ELLE 644
>gi|227832630|ref|YP_002834337.1| ATP-dependent DNA helicase II [Corynebacterium aurimucosum ATCC
700975]
gi|227453646|gb|ACP32399.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
ATCC 700975]
Length = 852
Score = 243 bits (620), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 203/740 (27%), Positives = 351/740 (47%), Gaps = 96/740 (12%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LN QQ EA +PLLIVAG GSGK G++P ILA+TFT
Sbjct: 55 LEGLNPQQEEAVT-HSGSPLLIVAGAGSGKTAVLTRRIAYLMRERGVAPWQILAITFTNK 113
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EM++R+G +VG A+ + +STFHS +++ R++A+ + + F IY RR
Sbjct: 114 AAAEMKERVGQLVGP-VAERMWVSTFHSICVRILRNNAQLVPGLNTNFTIYDGDDARR-- 170
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
++ I+ DM L S ++ R
Sbjct: 171 -------------LLTMIAKDM-------------------QLDLKKYSARVLANQISNR 198
Query: 409 DGMDVAKASGKTPAEFRKIGDEIG-AAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
++ + AE K EI A++ E Y LR+ N++D+ DLI V++ + P+
Sbjct: 199 KNELISPEQARAEAERTKNPFEITVASVYEEYQRRLRAANSVDFDDLIGEVVRIFNQHPQ 258
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRIT-------IVGDDDQSIFSFNGA 520
V + Y+ +K +++DE+QDT+ QY+L+ L + +VGD DQSI++F GA
Sbjct: 259 VVEFYRRRFKHVLIDEYQDTNHAQYALVSALVGRGELPPDAPELCVVGDSDQSIYAFRGA 318
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
I F +D+ I L +NYRST+ I+ AA+++I N R + KN+ T + G +I
Sbjct: 319 TIRNIQEFERDYPQAHTILLEQNYRSTQTILNAANAVIAKNEGRRE-KNLWTAHGQGEQI 377
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
+ NE + +I +I A G A Y IA++YR + + + F IP+
Sbjct: 378 VGYVADNEHDEARYIASEIDSLADKGTA----YSDIAVMYRTNNASRALEDIFVRSGIPY 433
Query: 641 N-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAF-LLLEKEEKKRVIDHIDKIS 698
+ G FY ++ +R ++A LR D RR+ + + + ++ H + +
Sbjct: 434 KVVGGTRFYERREIRDLVAYLRIMDNPDDTVSLRRIINVPKRAIGDKAQAQIALHAENLG 493
Query: 699 TIRKCSFISAACDIFGAKISGTFKRS--------QLTQGRKVLLTLEMISKLVRREPSIS 750
SF +A D K++G R+ ++ +G + + M+++ V +P +
Sbjct: 494 ----VSFGAALRDAAAGKVAGLGTRAVNAVSKFNEMMEGVRAQIP-GMVNE-VTGQPDLG 547
Query: 751 AVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKE 810
++ ++ + + LE D G L+ N+L SV + ++ + ++ A E
Sbjct: 548 ELLNALLDATGYRAELENSN--DPQDGARLDNLNELVSVAREFSSEAANEMAF-LGADAE 604
Query: 811 EGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIHQSKGLEWDIVFV 869
E + + L+AF++ +S Q D+E+ VTL T+H +KGLE+ +VF+
Sbjct: 605 EAPELSEGEAAPGSLQAFLEKVSLVADAD---QIPDHESGVVTLMTLHTAKGLEFPVVFL 661
Query: 870 AKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW--QLLQ 927
+ + P + + EERRL YV +TRAR++L++ ++ ++W +
Sbjct: 662 TGWEDGQFPHMRSLGDP-----KELSEERRLAYVGITRAREQLYLTRAILRSSWGNPVTN 716
Query: 928 P-SRFLKEIPHHLREVQAEQ 946
P SRFL E+P L + + E+
Sbjct: 717 PASRFLAEVPEDLIDWRREE 736
>gi|410728257|ref|ZP_11366438.1| ATP-dependent DNA helicase PcrA [Clostridium sp. Maddingley
MBC34-26]
gi|410597196|gb|EKQ51829.1| ATP-dependent DNA helicase PcrA [Clostridium sp. Maddingley
MBC34-26]
Length = 755
Score = 243 bits (620), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 217/730 (29%), Positives = 352/730 (48%), Gaps = 120/730 (16%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q E A + +LI+AG GSGK GI+P +ILA+TFT AA
Sbjct: 7 LNKEQYEGAT-TIDGQVLILAGAGSGKTRVLTHRMAHMIEDLGIAPYSILAITFTNKAAK 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM+DR+ +++G+ A+ + ISTFHS +++ R +K+ S F IY Q+ + E +
Sbjct: 66 EMKDRVKALIGE-RAENMWISTFHSTCVRILRREIDKIGYKSSFTIYDSSDQKTLVKECM 124
Query: 353 RLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
+ L N+K L + I G G + + S+ SF L
Sbjct: 125 KALNINDKDLTEQEIM-------GKIGKAKDRMQ--------SVRSFML----------- 158
Query: 412 DVAKASGKTPAEFR--KIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ A FR K+ D + E Y L+ NALD+ DLI +V+L + PEV
Sbjct: 159 -------ENEANFREKKVAD-----VYEMYQKRLKENNALDFDDLIFKTVELFKSNPEVL 206
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ+ +K I+VDE+QDT+ QY L+++LAS + I +VGDDDQ I+ + GADI+ F
Sbjct: 207 EFYQNKFKYIMVDEYQDTNGAQYELVKLLASKYKNICVVGDDDQCIYQWRGADITNILDF 266
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K I+L +NYRS I+ AA+ +I +N R + K ++T+ GSKI I + +
Sbjct: 267 EKDYPGAKVIKLEQNYRSKGNILNAANVVIVNNSNR-KSKVLRTEQEPGSKIKIYRAYAD 325
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVAF 647
+ F+ +I E +Y AILYR ++F+ + R + IP+ I G F
Sbjct: 326 SDEGDFVGKQIQEIKEKEDK---NYNDFAILYRTNAQSRIFEESLRRKGIPYKIVGGTRF 382
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y +K ++ I+A L+ + DD RR+ + ++ + + + +T + +
Sbjct: 383 YDRKEIKDILAYLKVLVNPQDDISIRRIIN---VPKRSIGDATVSKVQEFATDFELNLWD 439
Query: 708 AACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLE 767
A ++ RS T + + T+E L+ + ++ VP L+E
Sbjct: 440 ALAEV----------RSIPTLTPRNVSTIEPFVTLMEN-------LMELSETVPVSVLIE 482
Query: 768 QRAVVDFDGGKLLNEDNDLRSV-----LQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
+ D K L E N++ L+ L++D DF T +DK
Sbjct: 483 S-ILKDTGYLKQLKESNEIEDKSRIENLKELVSDAVDFEKT-----------SEDKS--- 527
Query: 823 NVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
L A+++ +S ++T+ + +++V L TIH +KGLE+ +VF+ P
Sbjct: 528 --LSAYLERVSLVQDTDKI----EEEDDAVVLMTIHSAKGLEFPVVFMVGMENGIFPGTA 581
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW--QLLQP-SRFLKEIPHH 938
F EK + +EE RRL YV +TRA++ LF+ + + + P S F+ EI
Sbjct: 582 SF-----EKESEMEESRRLCYVGITRAKQTLFMTSAEVRRVFGKTVAYPQSDFINEIKPE 636
Query: 939 LRE-VQAEQS 947
L+E V AE++
Sbjct: 637 LKEYVGAEKT 646
>gi|298372853|ref|ZP_06982843.1| ATP-dependent DNA helicase PcrA [Bacteroidetes oral taxon 274 str.
F0058]
gi|298275757|gb|EFI17308.1| ATP-dependent DNA helicase PcrA [Bacteroidetes oral taxon 274 str.
F0058]
Length = 776
Score = 243 bits (620), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 223/761 (29%), Positives = 360/761 (47%), Gaps = 109/761 (14%)
Query: 237 MPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNIL 282
M D S+ + LN QL AA P +IVAG GSGK G S+IL
Sbjct: 4 MADNISQIDKLLNPAQL-AAVTYCDGPSVIVAGAGSGKTRVLTYKIAYLIAQGFPASSIL 62
Query: 283 AMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHG 342
A+TFT AA+EM++RI IVG+ + L TFHS L++ R + + +F IY
Sbjct: 63 ALTFTNKAANEMKERIMQIVGEKYTRYLWAGTFHSVFLRILRQEVDAIGFLPDFTIYDTQ 122
Query: 343 QQR---RAIIEAVRLLENEKIL----VVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSM 395
+ ++I++ ++L +EKI V RIS M N ++
Sbjct: 123 DSKSLVKSIVKDMKL--DEKIYSASAVFNRISA-----------------MKNRLI---- 159
Query: 396 SSFKLCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLI 455
D +A + G + + I Y R NA+D+ D++
Sbjct: 160 --------------ASDDYRADSDMNRDDYHRGWQYFSEIFAAYCTRCRQANAMDFDDIL 205
Query: 456 SCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSI 514
+ LL P++ +Y++ + I+VDE+QDT+ Q+ ++ +LA H RI++VGDD QSI
Sbjct: 206 LHTYLLLKNNPDILAKYRNRFAFILVDEYQDTNIAQHRIINLLAKEHRRISVVGDDAQSI 265
Query: 515 FSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQL-KNVQTD 573
+SF GA+I SF+K+F + +L NYRST+ IV+AA+SLI N R Q+ K V ++
Sbjct: 266 YSFRGANIDNILSFQKNFEGCRIFKLEENYRSTQNIVDAANSLIAKN--RFQIPKRVYSN 323
Query: 574 NSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
G KI + C + + I D+I A++ A Y IA+LYR + + A
Sbjct: 324 LPKGDKIKVLSCFTDRNEAEVIADEIKSAAADRDA---HYSDIAVLYRTNAQSRALEDAL 380
Query: 634 RERKIPFNIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRV--FKAFLLLEKEEKKRV 690
R IP+ I+ G++FY +K ++ ++A +R + D RR+ + A + +K K +
Sbjct: 381 RNDNIPYRIYGGLSFYSRKEIKDVLAYMRLVINHLDAESLRRIINYPARTIGDKTVAK-L 439
Query: 691 IDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSIS 750
ID +S+ + S + DI I F T+ +K E+IS L S
Sbjct: 440 ID----LSSKHRISPLDCIFDI--DNIPNDFNAGTRTKLKKF---GELISNLTEVYRSSD 490
Query: 751 AVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKE 810
A T+ A ++ ++E+ L+ ++D+ +V + ++ + L+ ++
Sbjct: 491 AYSTANA-IITASGIMEE-----------LSSNDDIENVSR--RENIHELLNAIHEYCEQ 536
Query: 811 EGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVA 870
+ ++ +D L F+ +S + T R + VTL TIH +KGLE+ VFVA
Sbjct: 537 KKSLGEDNPS----LSEFLSEVSLLTDQD--TDRDGQRDCVTLMTIHSAKGLEFAYVFVA 590
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQ---LLQ 927
E +P ++ + +EEERRLLYVA+TRA+++ F+ Y W
Sbjct: 591 GIEEDLLP------SSMCQTEYEIEEERRLLYVAITRAKRRCFLSYSKTRFRWGNVCYCS 644
Query: 928 PSRFLKEI-PHHLREVQAEQSVQDQHENIPEGTAQFTINLP 967
PSRFL +I +L QA D+ + G + F +P
Sbjct: 645 PSRFLSDIDEQYLDMPQAFAQYPDEAPSFERGGSSFPSFVP 685
>gi|332290739|ref|YP_004429348.1| UvrD/REP helicase [Krokinobacter sp. 4H-3-7-5]
gi|332168825|gb|AEE18080.1| UvrD/REP helicase [Krokinobacter sp. 4H-3-7-5]
Length = 795
Score = 243 bits (620), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 216/743 (29%), Positives = 340/743 (45%), Gaps = 130/743 (17%)
Query: 234 TQNMPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPS 279
T M + Y++ LN+ Q A L+++AG GSGK G+
Sbjct: 15 TPAMDSKLEVYIEGLNEAQ-RAPTLHKEGALIVIAGAGSGKTRVLTLRIAYLMSQGVDAF 73
Query: 280 NILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIY 339
NIL++TFT AA EM+ RI IVG + AK L + TFHS ++ R A+KL S F IY
Sbjct: 74 NILSLTFTNKAAREMKKRISDIVGSSEAKNLWMGTFHSIFAKILRIEADKLGYPSNFTIY 133
Query: 340 GHGQQRRAIIEAVRLLENEK-ILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSF 398
+R I ++ L+ +K I K+I +SSF
Sbjct: 134 DTQDSQRLISAIIKELQLDKDIYKYKQIQN-------------------------RISSF 168
Query: 399 K--LCQYNKFERDGMDV-AKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLI 455
K L ++ D V A A K P ++G+ I Y A+D+ DL+
Sbjct: 169 KNSLITVRAYQNDPELVEADAMAKRP----RMGE-----IYAEYVDRCFKAGAMDFDDLL 219
Query: 456 SCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSI 514
+ +LL+ FPEV +YQ+ +K I+VDE+QDT+ QY +++ L+ I +VGDD QSI
Sbjct: 220 LRTNELLNRFPEVLNKYQNRFKYILVDEYQDTNHSQYLIVKALSDKFQNICVVGDDSQSI 279
Query: 515 FSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDN 574
++F GA+I+ +F+KD+ N RL +NYRS++ IVEAA+S+I+ N R K V T N
Sbjct: 280 YAFRGANINNILNFQKDYENVAMYRLEQNYRSSKVIVEAANSVIEKNKTRLD-KTVWTAN 338
Query: 575 SHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFR 634
G +II+ + + ++ I E+ N G AILYR + + A R
Sbjct: 339 PDGGEIIVHRSPTDGEEGRYVASSIFENRMNHQ---LMNGDFAILYRTNAQSRAMEDALR 395
Query: 635 ERKIPFNIHG-VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH 693
+R IP+ I+G ++FY++K ++ ++ LR + D+ E KRVI++
Sbjct: 396 KRDIPYRIYGGLSFYQRKEIKDVLGYLRVLINPKDE---------------EALKRVINY 440
Query: 694 IDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSIS--- 750
A I G I + GR + +E I +L PS++
Sbjct: 441 --------------PARGIGGTTID-KLTVAAKHYGRSMFEVMEKIEQL---GPSMNINR 482
Query: 751 AVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKE 810
T + N V + F ++LNE +D +V + + A T L
Sbjct: 483 GTQTKLKNFVTM--------IKSF---QILNEQSDAFTVAEKV-AKKTGLLQELKKDGTP 530
Query: 811 EG-----NVDQ----------DKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTT 855
EG N+++ ++K + + +++ + +++ V L T
Sbjct: 531 EGVARIENIEELLNGMRDFVEEQKELADTTGSLAEFLEDVALATSMDNDTGDDDRVALMT 590
Query: 856 IHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFIL 915
IH +KGLE+ V++ E P +G + +EEERRL YVA+TRA K+ ++
Sbjct: 591 IHLAKGLEFPFVYIVGMEEDLFP-----SGMSMSTRSELEEERRLFYVALTRAEKQAYLT 645
Query: 916 YVMMDANWQLL---QPSRFLKEI 935
Y W L +PSRF++EI
Sbjct: 646 YTESRYRWGKLVDAEPSRFIEEI 668
>gi|325262187|ref|ZP_08128925.1| ATP-dependent DNA helicase PcrA [Clostridium sp. D5]
gi|324033641|gb|EGB94918.1| ATP-dependent DNA helicase PcrA [Clostridium sp. D5]
Length = 741
Score = 243 bits (620), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 222/726 (30%), Positives = 363/726 (50%), Gaps = 111/726 (15%)
Query: 247 SLNDQQLEAA-CGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAA 290
+LND+Q EA C + PLLI+AG GSGK G++P NILA+TFT A
Sbjct: 6 TLNDEQREAVYC--TNGPLLILAGAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNKA 63
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIE 350
A EMR+R+ ++VG + + + +STFHS +++ R H ++L + F IY Q+ + +
Sbjct: 64 AGEMRERVDNLVGFGS-ESIWVSTFHSTCVRILRRHIDRLGYDNNFTIYDADDQKTLMKD 122
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
+L++ I T + Y SL + A+ S + +L ++E
Sbjct: 123 VCKLID---------IDTKV--------YKERSL--LGAI---SSAKDELISPEEYE--- 157
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
++ A GK +KI A + Y LR+ NALD+ DL+ +V+L T P+V +
Sbjct: 158 LNTAGDYGK-----QKI-----AKVYREYEKQLRANNALDFDDLLVKTVQLFQTQPDVLE 207
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFR 529
YQ+ ++ I+VDE+QDT+ +Q+ + +LA + + +VGDDDQSI+ F GA+I +F
Sbjct: 208 NYQERFRYIMVDEYQDTNTVQFKFVSLLAGKYKNLCVVGDDDQSIYKFRGANIKNILNFE 267
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
++F + + I+L +NYRST I+ AA+++I +N R + K + TDN G KI +++
Sbjct: 268 QEFQDARVIKLEQNYRSTSNILNAANAVISNNCGR-KDKTLWTDNGEGEKIQLRQFDTAY 326
Query: 590 AQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVAFY 648
+ FI + I H G +Y AILYR ++F+ F IP+ I GV FY
Sbjct: 327 DEADFIAEDIRNHTREG----STYNDHAILYRTNAQSRLFEERFVASNIPYKIVGGVNFY 382
Query: 649 RKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISA 708
++ ++ +++ L+T G DD RR+ + ++ I+ + + + R+ F A
Sbjct: 383 ARREIKDLLSYLKTIDNGKDDLAVRRIIN---VPKRGIGLTTINRVQESALEREIGFYEA 439
Query: 709 ACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQ 768
+ G + RS V L +E K +E SIS ++ K ++E+
Sbjct: 440 ---LRGLDLIPNIGRSAAKLDSFVAL-IEYF-KTRAQEDSISDLM---------KEIIEK 485
Query: 769 RAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN----- 823
V+ N + + + Q + ++ + LS AA EE +DQD+K ++
Sbjct: 486 TGYVE-------NLEAEDKEDAQARIENIDELLSK--IAAFEESCLDQDEKPTLSGFLEE 536
Query: 824 -VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
L A ID + E N++ V L T+H +KGLE+ V++A + P
Sbjct: 537 VALVADIDSLDE------------NQDYVVLMTLHSAKGLEFPHVYLAGMEDGLFP---S 581
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHHL 939
+ ++ +EEERRL YV +TRA K+L + M+ Q + SRFLKEIP L
Sbjct: 582 YMTITSDDIEELEEERRLCYVGITRAEKELTVSCARRRMIRGETQYNKMSRFLKEIPKDL 641
Query: 940 REVQAE 945
E A+
Sbjct: 642 LETGAD 647
>gi|423134161|ref|ZP_17121808.1| hypothetical protein HMPREF9715_01583 [Myroides odoratimimus CIP
101113]
gi|371646918|gb|EHO12428.1| hypothetical protein HMPREF9715_01583 [Myroides odoratimimus CIP
101113]
Length = 807
Score = 243 bits (620), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 219/742 (29%), Positives = 338/742 (45%), Gaps = 150/742 (20%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
Y+ LN+ Q A P++++AG GSGK G+ NILA+TFT
Sbjct: 33 YIDQLNEAQ-RAPVLQKDGPMIVIAGAGSGKTRVLTLRIAYLMHQGVDAFNILALTFTNK 91
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ RI IVG + AK L + TFHS ++ R+ A+KL S F IY +R I
Sbjct: 92 AAREMKVRIAQIVGSSEAKNLWMGTFHSVFAKILRAEADKLGYPSNFTIYDSQDSQRLIG 151
Query: 350 EAVRLLENEKIL-----VVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYN 404
+ ++ ++ +K + ++ RIS+ + SL + A YN
Sbjct: 152 QIIKEMQLDKDIYKPKEILSRISS-----------YKNSLVTVKAY------------YN 188
Query: 405 KFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSC---NALDYHDLISCSVKL 461
E + A A K P +IG E YN + C A+D+ DL+ + +L
Sbjct: 189 NPE---LQEADAMSKRP----RIG--------EIYNNYVERCFKSGAMDFDDLLLKTNEL 233
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGA 520
L+ FP+V +YQ+ +K I+VDE+QDT+ QY +++ L+ I +VGDD QSI++F GA
Sbjct: 234 LTRFPDVLSKYQNRFKYILVDEYQDTNHSQYLIVRALSDRFQNICVVGDDAQSIYAFRGA 293
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
+I+ +F+KD+ + RL +NYRS+R IVEAA+S+I +N + + K V T N G KI
Sbjct: 294 NINNILNFQKDYEGVQTYRLEQNYRSSRNIVEAANSVIDNNKVKLE-KVVWTANDFGPKI 352
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
+ + + F+ I E + + AILYR + + A R++ IP+
Sbjct: 353 KVHRSLTDGEEGRFVASTIFEEKMQNQKNNSDF---AILYRTNAQSRAMEDALRKKDIPY 409
Query: 641 NIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKA-----------FLLLEKEEKK 688
I+ G++FY++K ++ +++ LR + D+ RV L + K
Sbjct: 410 RIYGGLSFYQRKEIKDVLSYLRLVINPKDEEALVRVINYPARGIGNTTLDKLTIAANHYK 469
Query: 689 R----VIDHIDKI------STIRKCSFISAACDIFGAKISGTFKRSQLTQG--RKVLLTL 736
R V++HIDKI T K S S F A + T QLT+ +K L
Sbjct: 470 RSIFEVVEHIDKIDLKITAGTRNKLSDFSNMIKAFQA-LEETMDAYQLTEHIVKKTGLVQ 528
Query: 737 EMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLAD 796
EM R+ + IT + N ++ LL
Sbjct: 529 EM------RKDTTPEGITRMEN-------------------------------IEELLNG 551
Query: 797 VTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTI 856
+ DF+ EG + D G L F++ ++ + +++ V L TI
Sbjct: 552 IKDFI---------EGQREVD--GARGALSEFMEDVA---LATDLDKDTGDDDRVALMTI 597
Query: 857 HQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILY 916
H +KGLE+ VF E P N + +EEERRL YVA+TRA + ++ Y
Sbjct: 598 HLAKGLEFPTVFCVGMEEDLFPSAMSMNTR-----SELEEERRLFYVALTRAEHQAYLTY 652
Query: 917 VMMDANWQLL---QPSRFLKEI 935
W L PSRF++EI
Sbjct: 653 AQSRYRWGKLVDSDPSRFIEEI 674
>gi|334144659|ref|YP_004537815.1| UvrD/REP helicase [Thioalkalimicrobium cyclicum ALM1]
gi|333965570|gb|AEG32336.1| UvrD/REP helicase [Thioalkalimicrobium cyclicum ALM1]
Length = 726
Score = 243 bits (619), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 194/712 (27%), Positives = 330/712 (46%), Gaps = 97/712 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LND Q +A + L ++AG GSGK G SP N+LA+TFT
Sbjct: 7 LDGLNDAQRQAVTLETGHGL-VLAGAGSGKTRVLVHRIAWVVEVLGASPYNVLAVTFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR R+ +++G A AK +T+ TFH + QL R H + F I Q+R
Sbjct: 66 AAREMRGRMEALMGPA-AKSVTMGTFHGIAYQLLRQHYQAAGLPQAFQILDSDDQKR--- 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+VKR+ M + + + F+ N + +
Sbjct: 122 ------------MVKRLLKAMNLDETQWPVKQVVGFI-----------------NSEKEE 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
G + + A+ E+Y + +D+ +L+ + +L PEV
Sbjct: 153 GRRAKHVDAGHNPYLKTL-----VAVYESYEQQCQQAGLVDFAELLLRAHELWLRSPEVL 207
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I+VDEFQDT+++QY+ L++LA R+ +VGDDDQSI+ + GA + F
Sbjct: 208 AFYQQRYQHILVDEFQDTNSLQYAWLRVLAGGRGRLFVVGDDDQSIYGWRGAKVENIRLF 267
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
+ F +RL +NYRST I+ AA+ LI HN +R KN+ +D G I+I E N+
Sbjct: 268 EQQFAEVALVRLEQNYRSTNRILLAANHLISHNTERMG-KNLWSDGEPGEPILIYEAFND 326
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAF 647
+C ++I++I G + +AILYR +VF+ + ++P+ I+ G+ F
Sbjct: 327 LDECQYVIEQIQGWLREG----GTREQVAILYRSNSQSRVFEQGLLQAEMPYRIYGGLRF 382
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y + ++ ++A LR + DD + RV+ L + + + + ++ + CS
Sbjct: 383 YDRAEIKDVLAYLRLIMNSADDAAFERVYN---LPTRGLGDKTMQQVRDLARDQACSMWQ 439
Query: 708 AACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLE 767
A+ + + L QG L +I++L +PS+ ++A+ V Q
Sbjct: 440 ASELLLNQGGLAARAKGAL-QG-----FLNLITELASLQPSL-----ALADFVLQ----- 483
Query: 768 QRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKA 827
V D G + + D Q L ++ + ++ + K QD + + +
Sbjct: 484 ----VMQDSGLQAHYEKDRSEQGQSKLENLDELVNAAASFEKR-----QDLQADTDNDNS 534
Query: 828 FIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAV 887
++++++ E Q E+++ L T+H +KGLE+ +VF+ E P + +
Sbjct: 535 LLNFLAQATLEAGDNQASAGESAIQLMTLHAAKGLEFPLVFMVGMEEGLFP-----SQSS 589
Query: 888 NEKGTSVEEERRLLYVAMTRARKKLFILYVM---MDANWQLLQPSRFLKEIP 936
+ + +EEERRL YV +TRA ++LF+ + N QPSRFL+E+P
Sbjct: 590 QDDPSRLEEERRLAYVGITRAEQRLFMCAAQRRRLHGNEIYSQPSRFLRELP 641
>gi|337290308|ref|YP_004629329.1| ATP-dependent DNA helicase II [Corynebacterium ulcerans BR-AD22]
gi|397653546|ref|YP_006494229.1| ATP-dependent DNA helicaseII [Corynebacterium ulcerans 0102]
gi|334698614|gb|AEG83410.1| ATP-dependent DNA helicase II [Corynebacterium ulcerans BR-AD22]
gi|393402502|dbj|BAM26994.1| ATP-dependent DNA helicaseII [Corynebacterium ulcerans 0102]
Length = 855
Score = 243 bits (619), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 222/750 (29%), Positives = 346/750 (46%), Gaps = 118/750 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+Q LN QQ + A +PLLIVAG GSGK G+ P ILA+TFT
Sbjct: 72 VQGLNPQQ-QQAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLMRIRGVQPGQILAITFTNK 130
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EMR+R+ +VG A + +STFHS +++ R A+ + + F IY +R +
Sbjct: 131 AAAEMRERVAHLVGP-IANRMWVSTFHSTCVRILREQAQLVAGLNTNFTIYDSDDSKRLL 189
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
++ + L +K+ + +L +S+ K N+
Sbjct: 190 A----MISKDMNLDIKKFTPRLLGA--------------------GISNLK----NELIS 221
Query: 409 DGMDVAKA-SGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
V++A S K P E AA+ Y LR NA+D+ DLI +V++ P+
Sbjct: 222 PETAVSEAESTKNPYETTV------AAVYVEYQRRLRQANAVDFDDLIGETVRIFQEHPQ 275
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA----SHNRITIVGDDDQSIFSFNGADIS 523
V + Y+ ++ +++DE+QDT+ QY L+ L + + + +VGD DQSI++F GA I
Sbjct: 276 VTEYYRRRFRHVLIDEYQDTNHAQYVLIHELVGKGPTASELCVVGDSDQSIYAFRGATIR 335
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
+ F +D+ + + L +NYRST+ I+ AA+S+I N R + K + T G I
Sbjct: 336 NIEEFERDYPDATTVLLEQNYRSTQTILNAANSVISQNENRRK-KKLWTALGSGEPIAGY 394
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-I 642
NE + FI +I A G Y IAI+YR S + + F IP+ +
Sbjct: 395 VADNEHDEARFIAQEIDALADKG----VDYSDIAIMYRTNNSSRAVEDVFMRSGIPYKVV 450
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFK-----------AFLLLEKEEKKRVI 691
G FY +K +R +IA LR D RR+ AFL L E +
Sbjct: 451 GGTRFYERKEIRDVIAYLRLLDNPEDTVSLRRIINTPRRGIGDKAVAFLTLHSENQ---- 506
Query: 692 DHIDKISTIRKCSFISAACDIFGAKIS--GTFKRSQLTQGRKVLLTL-----EMISKLVR 744
SF A D +IS G R+ ++ ++ L E ++++
Sbjct: 507 ----------GVSFQQALIDAAAGQISLLGARGRNAISGFVDMMAGLRSSAAESVNEITG 556
Query: 745 REPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTK 804
P I VI+ + ++ K LE+ D G L+ N+L SV + ++ + +
Sbjct: 557 M-PDIGDVISQILDITGYKAELEKSN--DPQDGARLDNLNELVSVAREFSSEAAN----Q 609
Query: 805 FTAAKEEGNVDQDKKGC----INVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIHQS 859
AK +G +D G L+AF++ +S Q DNE VTL T+H +
Sbjct: 610 VAYAKMDGGELEDLGGQGEPEPGSLQAFLERVSLVADAD---QIPDNEQGLVTLMTLHTA 666
Query: 860 KGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMM 919
KGLE+ +VF+ + + P + G E + EERRL YV +TRARK L+I M+
Sbjct: 667 KGLEFPVVFLMGWEDGQFPHLRAL-GDPKE----LAEERRLAYVGITRARKTLYITRAML 721
Query: 920 DANW--QLLQP-SRFLKEIPHHLREVQAEQ 946
++W + P SRFL EIP L + + E+
Sbjct: 722 RSSWGNPVTNPASRFLTEIPEDLLDWRREE 751
>gi|229917962|ref|YP_002886608.1| ATP-dependent DNA helicase PcrA [Exiguobacterium sp. AT1b]
gi|229469391|gb|ACQ71163.1| ATP-dependent DNA helicase PcrA [Exiguobacterium sp. AT1b]
Length = 738
Score = 243 bits (619), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 211/729 (28%), Positives = 338/729 (46%), Gaps = 125/729 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
++ +N +Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 9 VKGMNPEQAEA-VKHTDGPLLIMAGAGSGKTRVLTHRVAYLMAAKQVAPWNILAITFTNK 67
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+DRI +VG A+++ ISTFHS +++ R +++ F I Q AI
Sbjct: 68 AAREMKDRIARLVG-GVAEDIWISTFHSMCVRILRRDIDRIRYDRSFSILDASDQLTAIK 126
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ V+K ++ D Y +L M + + R
Sbjct: 127 Q-----------VLKELNLDPKK------YEPRTLLGM------------ISNHKNELRT 157
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D A G P E R I D + Y L+ N LD+ DLI ++ L P+V
Sbjct: 158 AKDAAALVGNNPYE-RIISD-----VYTAYEKKLKQNNVLDFDDLIMKTIHLFQEAPDVL 211
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDSF 528
YQ +K I VDE+QDT+ QY+L+++LA +H + +VGD DQSI+ + GADI+ +F
Sbjct: 212 AFYQKKFKYIHVDEYQDTNRAQYTLVKLLAQAHENLCVVGDSDQSIYRWRGADIANILTF 271
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + I L +NYRST+ I+EAA+ +IQ+N R + KN+ T+N G K+++ ++
Sbjct: 272 EKDYPSAHVILLEQNYRSTKRILEAANGVIQNNASRKE-KNLWTENDEGEKLLLHVASDD 330
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ FI++++ E G YG +A+LYR + + + IP+ + G F
Sbjct: 331 RDEAFFIMNQMKELKMEG----MDYGQMAVLYRTNAQSRGLEEMLLKSNIPYKMVGGTKF 386
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRK 702
Y +K ++ ++A LR +D + RV E KR ID + + ++
Sbjct: 387 YERKEIKDVLAYLRLIANPDEDISFVRVVN--------EPKRGIGAATIDKLGDFADMQG 438
Query: 703 CSFISAACDIFGAKISGTFKR--SQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
S + A DI ++SG R ++L R++++ L ++ + SIS ++ V
Sbjct: 439 VSLMDAIRDI---ELSGIAPRTATKLADFRQMMMDLRQMADYL----SISELVEEVLKKT 491
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
+ +L+ ++ + L ++ +FLS KE D++
Sbjct: 492 GYEEMLKIEKTLEAESR----------------LENLQEFLSVAQNFEKE-----SDEQT 530
Query: 821 CINVLKAF-----IDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANET 875
+ L +D + E + H VTL T+H +KGLE+ +VF+ E
Sbjct: 531 LVAFLTDLTLVSDLDSLDEVDESH----------QVTLMTLHSAKGLEFPVVFLIGMEEG 580
Query: 876 EIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFL 932
P N +EEERRL YV +TRA K+L++ M+ +Q SRFL
Sbjct: 581 LFPHSRALNDE-----EEMEEERRLAYVGITRAEKRLYLTRAQSRMLYGRFQNNPESRFL 635
Query: 933 KEIPHHLRE 941
E+P L E
Sbjct: 636 HELPETLLE 644
>gi|392424579|ref|YP_006465573.1| ATP-dependent DNA helicase PcrA [Desulfosporosinus acidiphilus SJ4]
gi|391354542|gb|AFM40241.1| ATP-dependent DNA helicase PcrA [Desulfosporosinus acidiphilus SJ4]
Length = 753
Score = 243 bits (619), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 211/721 (29%), Positives = 343/721 (47%), Gaps = 103/721 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
L LN Q EAA PLLI+AG GSGK G+ P +ILA+TFT A
Sbjct: 4 LDDLNSVQREAA-EHQEGPLLILAGAGSGKTRVLTYRIAHLIARGVDPGDILAITFTNKA 62
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLE-RTSEFLIYGHGQQRRAII 349
A EMRDR+ ++VG + + L +STFHS +++ R E L T F+IY G Q I
Sbjct: 63 AKEMRDRVTTLVG-SEGRGLWVSTFHSACVRILRRDIEHLPGYTRNFVIYDAGDQLALIK 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++ EK L K+ S + + S + KL F
Sbjct: 122 GCLK----EKNLDEKKFSPRGVAS------------------VISDAKNKLLDPEGFAVQ 159
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D ++ K+ D + +Y LR+ NALD+ D+I +VKL V
Sbjct: 160 ASDYFQS---------KVVD-----LYRDYQKKLRTNNALDFDDIIMLTVKLFRENDRVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDSF 528
YQ+ ++ I+VDE+QDT+ QY L+++LAS R + +VGDDDQS++ + GADI F
Sbjct: 206 DYYQEKFRYILVDEYQDTNHAQYMLIKLLASRYRNLCVVGDDDQSVYGWRGADIQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
+D+ K I+L +NYRST+ I++AA++++++N R + K++ T+NS G I+ ++E
Sbjct: 266 ERDYPEAKVIKLEQNYRSTQKILDAANAVVRNNEGRKE-KSLWTENSSGQPIVCYVSNDE 324
Query: 589 DAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGV 645
+ +++++I L P Y +LYR ++ + + +P+ I G+
Sbjct: 325 RDEARYVVERIQRLHELEGRP-----YSDFTVLYRTNAQSRILEEQLMKAALPYRIFSGL 379
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLL-LEKEEKKRVIDHIDKISTIRKCS 704
FY++ ++ ++A LR D + RV L + ++++++ D+
Sbjct: 380 KFYQRLEIKDMLAYLRLIYNPSDQVSFARVLNVPKRGLGESTLEKILEYADE-------- 431
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLTL-EMISKLVRREPSISAVITSVANMVPQK 763
+ A + + + +K LL ++ LV E S +A +T + + K
Sbjct: 432 ---QGMPVLDAILEADYIPELTARAKKPLLAFAHLMQGLV--EFSKNATVTELVKEILNK 486
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
+A+++ D + L ++L++L VT K ++ EG +Q G
Sbjct: 487 --TGYQAILEADSSP--EAEARLENLLEFL--SVTTEFDEKAAQSETEGEEEQILGGVSG 540
Query: 824 VLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
L+ + + I E + E S+ L T+H +KGLE+ +VFV E P
Sbjct: 541 FLEQVSLVADIDELDPA---------EESIALMTMHSAKGLEYPVVFVVGMEEGIFPSGR 591
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFIL---YVMMDANWQLLQPSRFLKEIPHH 938
F + +EEERRL YVA+TRAR+KL++ M+ Q PSRFL+EIP
Sbjct: 592 SFLDP-----SELEEERRLCYVAITRAREKLYLCNSEMRMLYGKTQYNPPSRFLEEIPSE 646
Query: 939 L 939
L
Sbjct: 647 L 647
>gi|329767008|ref|ZP_08258536.1| hypothetical protein HMPREF0428_00233 [Gemella haemolysans M341]
gi|328837733|gb|EGF87358.1| hypothetical protein HMPREF0428_00233 [Gemella haemolysans M341]
Length = 728
Score = 243 bits (619), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 211/727 (29%), Positives = 354/727 (48%), Gaps = 126/727 (17%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTT 288
++Q++ND QL+A ++++AG GSGK + SNILA+TFT
Sbjct: 3 FVQNMNDNQLKAIL-KTDGAVMVIAGAGSGKTRVLTNRIAYLIAEKNVLESNILAITFTN 61
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA EM++RI ++VG+ T+K + I+TFHS +++ R H E L F I +Q+ I
Sbjct: 62 KAAKEMKERIYALVGE-TSKYIWINTFHSMCVRILRQHIELLGYNKNFTILDTSEQKSII 120
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
V+ L L+ D Y A++ + + SM++ K + + R
Sbjct: 121 KTIVKNLN--------------LSEDS---YQPANVLKIISNAKNSMTTVKAMR--EQSR 161
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
G K AE I +Y L+ + LD+ DL+ ++ L FPEV
Sbjct: 162 YGY------MKNVAE-----------IYAHYQRYLKKNSVLDFDDLMLKTIILFKKFPEV 204
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDS 527
YQ+ ++ I VDE+QDT+ +QY L+++L+ H + +VGDDDQSI+S+ GA +
Sbjct: 205 LAIYQNKFEYIHVDEYQDTNVIQYRLIKMLSEVHKNVCVVGDDDQSIYSWRGACSDNIIN 264
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KD+ + + I L +NYRS I++AA+++I++N R + K + ++N G KI + N
Sbjct: 265 FEKDYKDVELIFLDQNYRSNSTILDAANAVIKNNTDRKE-KALWSENKGGGKISVYAASN 323
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG-VA 646
+ + I KILE G SY IAILYR + + + IP+ + G +
Sbjct: 324 DKDETDDIAKKILELKKEG----ISYKDIAILYRANYLSRQMENSCLAFGIPYKLIGSLK 379
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI-----DHIDKISTIR 701
F +++ VR ++A L + D+ RR+ KR I + ID +T
Sbjct: 380 FLQRQEVRDLLAYLNVIVNRDDEFSLRRIINV--------PKRGIGASSMEKIDNYATQY 431
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
S A +I +S +K+ + +++ L+ +
Sbjct: 432 GISLFDALKNIEAVGVS-----------KKITTNVHLLTNLIEKYSE------------T 468
Query: 762 QKYLLEQRAVVDF-DGG--KLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
KY +++ + + D G +L E ND + + + ++++ +S+ AK+ +++
Sbjct: 469 DKYSIDELIIGIYKDSGYESMLKESND--AYAESRIENISELVSS----AKQFSSMND-- 520
Query: 819 KGCINVLKAFIDYISERETEHFRTQRHDNEN---SVTLTTIHQSKGLEWDIVFVAKANET 875
+ ID+ISE T D+EN SV L+T+H +KGLE+ +VF+ E
Sbjct: 521 --------SLIDFISEMSL----TSDADDENEEDSVVLSTVHAAKGLEYKVVFIMGLEEN 568
Query: 876 EIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFL 932
P + + + +EK +EEERRL YVA+TRA++KLF+ Y M + ++ + SRFL
Sbjct: 569 LFPSIRDAESSADEK-NKMEEERRLAYVAITRAKEKLFMSYANRRMQFGSIKMNKRSRFL 627
Query: 933 KEIPHHL 939
E+P+ L
Sbjct: 628 DEVPNKL 634
>gi|384515223|ref|YP_005710315.1| ATP-dependent DNA helicase II [Corynebacterium ulcerans 809]
gi|334696424|gb|AEG81221.1| ATP-dependent DNA helicase II [Corynebacterium ulcerans 809]
Length = 855
Score = 243 bits (619), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 222/749 (29%), Positives = 343/749 (45%), Gaps = 116/749 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+Q LN QQ + A +PLLIVAG GSGK G+ P ILA+TFT
Sbjct: 72 VQGLNPQQ-QQAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLMRIRGVQPGQILAITFTNK 130
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EMR+R+ +VG A + +STFHS +++ R A+ + + F IY +R +
Sbjct: 131 AAAEMRERVAHLVGP-IANRMWVSTFHSTCVRILREQAQLVAGLNTNFTIYDSDDSKRLL 189
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
++ + L +K+ + +L +S+ K N+
Sbjct: 190 A----MISKDMNLDIKKFTPRLLGA--------------------GISNLK----NELIS 221
Query: 409 DGMDVAKA-SGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
V++A S K P E AA+ Y LR NA+D+ DLI +V++ P+
Sbjct: 222 PETAVSEAESTKNPYETTV------AAVYVEYQRRLRQANAVDFDDLIGETVRIFQEHPQ 275
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA----SHNRITIVGDDDQSIFSFNGADIS 523
V + Y+ ++ +++DE+QDT+ QY L+ L + + + +VGD DQSI++F GA I
Sbjct: 276 VTEYYRRRFRHVLIDEYQDTNHAQYVLIHELVGKGPTASELCVVGDSDQSIYAFRGATIR 335
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
+ F +D+ + + L +NYRST+ I+ AA+S+I N R + K + T G I
Sbjct: 336 NIEEFERDYPDATTVLLEQNYRSTQTILNAANSVISQNENRRK-KKLWTALGSGEPIAGY 394
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-I 642
NE + FI +I A G Y IAI+YR S + + F IP+ +
Sbjct: 395 VADNEHDEARFIAQEIDALADKG----VDYSDIAIMYRTNNSSRAVEDVFMRSGIPYKVV 450
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFK-----------AFLLLEKEEKKRVI 691
G FY +K +R +IA LR D RR+ AFL L E +
Sbjct: 451 GGTRFYERKEIRDVIAYLRLLDNPEDTVSLRRIINTPRRGIGDKAVAFLTLHSENQ---- 506
Query: 692 DHIDKISTIRKCSFISAACDIFGAKIS--GTFKRSQLTQGRKVLLTLEMISKLVRRE--- 746
SF A D +IS G R+ ++ ++ L + E
Sbjct: 507 ----------GVSFQQALIDAAAGQISLLGARGRNAISGFVDMMAGLRTSAAESVNEITG 556
Query: 747 -PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKF 805
P I VI+ + ++ K LE+ D G L+ N+L SV + ++ + +
Sbjct: 557 MPDIGDVISQILDITGYKAELEKSN--DPQDGARLDNLNELVSVAREFSSEAAN----QV 610
Query: 806 TAAKEEGNVDQDKKGC----INVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIHQSK 860
AK +G +D G L+AF++ +S Q DNE VTL T+H +K
Sbjct: 611 AYAKMDGGELEDLGGQGEPEPGSLQAFLERVSLVADAD---QIPDNEQGLVTLMTLHTAK 667
Query: 861 GLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD 920
GLE+ +VF+ + + P + G E + EERRL YV +TRARK L+I M+
Sbjct: 668 GLEFPVVFLMGWEDGQFPHLRAL-GDPKE----LAEERRLAYVGITRARKTLYITRAMLR 722
Query: 921 ANW--QLLQP-SRFLKEIPHHLREVQAEQ 946
++W + P SRFL EIP L + + E+
Sbjct: 723 SSWGNPVTNPASRFLTEIPEDLLDWRREE 751
>gi|212696136|ref|ZP_03304264.1| hypothetical protein ANHYDRO_00672 [Anaerococcus hydrogenalis DSM
7454]
gi|212676765|gb|EEB36372.1| hypothetical protein ANHYDRO_00672 [Anaerococcus hydrogenalis DSM
7454]
Length = 730
Score = 243 bits (619), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 199/742 (26%), Positives = 349/742 (47%), Gaps = 142/742 (19%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +LND+Q EA + PLL+VAG GSGK ++P+NILA+TFT
Sbjct: 4 LSNLNDKQKEAVLHEKG-PLLVVAGAGSGKTRVLTTSISYLIKEKFVNPTNILAITFTNK 62
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM++RI +++ + + L I TFHS ++ R + K+ + F IY Q+ +
Sbjct: 63 AANEMKERISNLLNEDVS-HLWIGTFHSICARILRMNINKIGYDNNFTIYDTNDQKTLVK 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
E ++ L + + K +N + F
Sbjct: 122 EIIKDLNYKDEISPKE--------------------ALNVISF----------------- 144
Query: 410 GMDVAKASGKTPAEFRKIG-----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLST 464
K +P EF I E I +NY N+LD+ DLI ++ L ++
Sbjct: 145 ----CKNKSISPEEFLNINTFYAKQEEYYKIYKNYEKKKFEYNSLDFDDLILKTLDLFAS 200
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADIS 523
P + YQ+ ++ + VDE+QDT+ QY L++ + HN IT+VGD DQSI+SF GADI+
Sbjct: 201 DPNTLKYYQNKFEYVYVDEYQDTNKSQYELIKAIGKLHNNITVVGDADQSIYSFRGADIN 260
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
F KDF N K I+L +NYRST I+ A+ LI++N +R KN+ T + GS+++ K
Sbjct: 261 NILDFEKDFKNAKTIKLEQNYRSTSNIINVANKLIRNNTERKD-KNLWTSQNDGSEVLYK 319
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-I 642
+ E + F+ID+I ++G +AILYR ++F+ + + + +
Sbjct: 320 KSSVESEEGKFVIDEINSLLNDG----YKLKDMAILYRMNAQSRIFEEYLMKNLLDYKVV 375
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKK----RVIDHIDKIS 698
G+ FY +K ++ +I+ L+ + DD +R+ E KK + I++++K +
Sbjct: 376 GGLKFYDRKEIKDLISYLKVLVNPKDDISLKRII-------NEPKKGIGNKTIENLEKEA 428
Query: 699 TIRKCSFISAACD--IFG---AKISGTFKR-----SQLTQGRKVLLTLEMISKLVRREPS 748
+ S CD +F K+ + ++ S++ + +++I +++ +
Sbjct: 429 SKLGFSLTELVCDPSLFSNLPTKLKTSCEKFYNPLSEIFDNYEDYKIVDLIEEVLDKSGY 488
Query: 749 ISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAA 808
I A + + Y +E R+ +D ++ +F+S +AA
Sbjct: 489 IKA--------LEESYSVENRSRID----------------------NLNEFIS---SAA 515
Query: 809 KEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVF 868
+ E N +D DY+ + ++++S++L TIH +KGLE+ + F
Sbjct: 516 EYESNNPEDN---------IHDYLENLSLLSDLDKTEESDDSISLMTIHSAKGLEFKVCF 566
Query: 869 VAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQ---L 925
V ++ P + ++EEERRL YVA+TRA +KL++ + +
Sbjct: 567 VVGMDDGLFPSKRSIDEG------NIEEERRLCYVAITRAMEKLYLSSAEIRRQFGQAVY 620
Query: 926 LQPSRFLKEIPHHLREVQAEQS 947
+PSRFL EI ++++ +++
Sbjct: 621 YKPSRFLSEIKSSIKQIDQDKT 642
>gi|347532459|ref|YP_004839222.1| ATP-dependent DNA helicase PcrA [Roseburia hominis A2-183]
gi|345502607|gb|AEN97290.1| ATP-dependent DNA helicase PcrA [Roseburia hominis A2-183]
Length = 746
Score = 243 bits (619), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 220/727 (30%), Positives = 336/727 (46%), Gaps = 125/727 (17%)
Query: 247 SLNDQQLEAACGDMST--PLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+LN+QQ G ++T P+LI+AG GSGK G++P NI+A+TFT
Sbjct: 6 TLNEQQ---KLGVITTEGPVLILAGAGSGKTRVLTHRTAYLIEEKGVNPYNIMAITFTNK 62
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+RI ++VG + + + +STFHS +++ R H +++ + F IY + +
Sbjct: 63 AAGEMRERIDALVGYGS-ESIWVSTFHSTCVRILRRHIDRIGYDTNFTIYDSDDSKSVMK 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
E + KR++ D Y SL S + +L +F
Sbjct: 122 E-----------ICKRLNIDTKI------YKERSLLAA-----ISSAKDELVSPTQF--- 156
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ A +S +F K + A + + Y L+ NALD+ DLI +V+LL T PEV
Sbjct: 157 ALQAAASS-----DFAK---KKQAQVYQEYQAALQKNNALDFDDLIVKTVELLQTDPEVL 208
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSF 528
YQ+ ++ I+VDE+QDT+ Q+ L+++LA + + +VGDDDQSI+ F GA+I +F
Sbjct: 209 AYYQERFRYIMVDEYQDTNTAQFELIRLLAGKYKNLCVVGDDDQSIYKFRGANIYNILNF 268
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
K F + I+L +NYRST+ I+ AA+S+I +NV R + K + T N G KI ++
Sbjct: 269 EKHFPDAVTIKLEQNYRSTQNILNAANSVIANNVGR-KAKTLWTANGEGEKIDFEQFDTA 327
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVAF 647
+ ++ I G YG A+LYR ++F+ F IP+ I GV F
Sbjct: 328 YEEADYVARDIASGVREGK---YGYGDYAVLYRTNAQSRLFEERFIVSNIPYKIVGGVNF 384
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y +K V+ ++A L+T DD RR+ KR I +T+ + S +
Sbjct: 385 YARKEVKDLLAYLKTIDNARDDLAVRRIINV--------PKRGIGA----TTLNRVSDYA 432
Query: 708 AACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLE 767
A DI +F S L E I L + I +T + M
Sbjct: 433 EAYDI-------SFYES--------LKRAEEIPSLGKSAAKIKPFVTFIQTM-------- 469
Query: 768 QRAVVDFDG-GKLLNEDNDLRSVLQYLLADVTDFLSTKF---------TAAKEEGNVDQD 817
R+ + + G LL E + ++ L A+ TD + A EEG
Sbjct: 470 -RSKLPYIGVADLLREVIEETGYVKELEAEGTDEAEARIENIDELLSKVVAYEEGEEQPT 528
Query: 818 KKGCIN--VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANET 875
G + L A ID + E + V L T+H +KGLE+ VF+A +
Sbjct: 529 LSGFLEEVALVADIDSVGE------------ENDYVVLMTLHSAKGLEFPKVFLAGMEDG 576
Query: 876 EIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFL 932
P + + +EEERRL YV +TRA K+L I M+ Q + SRF+
Sbjct: 577 LFPSYMSITS--DNASSELEEERRLAYVGITRAMKELVITSARQRMVRGETQYNKVSRFV 634
Query: 933 KEIPHHL 939
KEIP L
Sbjct: 635 KEIPPEL 641
>gi|418575671|ref|ZP_13139820.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
gi|379325869|gb|EHY92998.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
Length = 731
Score = 243 bits (619), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 213/737 (28%), Positives = 351/737 (47%), Gaps = 127/737 (17%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
+ND+Q +A PLLI+AG GSGK +SP N+LA+TFT AA
Sbjct: 1 MNDEQSQA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAAK 59
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM+ R+ ++VG+ A+ L +STFHS +++ R A+++ F I Q+ I +
Sbjct: 60 EMKARVETLVGEQ-AQVLWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKD-- 116
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+L+NE I K M ++S+ K N+
Sbjct: 117 -VLKNENIDSKK---------------------FEPRMFIGAISNLK----NEL------ 144
Query: 413 VAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
KTP + +K +++ A + + Y L ALD+ DLI +++L P+V
Sbjct: 145 ------KTPEDAQKEANDYHEQMVATVYKGYQRQLSRNEALDFDDLIMVTIRLFERVPDV 198
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDS 527
YQ+ ++ I VDE+QDT+ QY+L+++LA+ + +VGD DQSI+ + GADI S
Sbjct: 199 LDYYQNKFQYIHVDEYQDTNKAQYTLVKLLAAKFKNLCVVGDSDQSIYGWRGADIQNILS 258
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F +D+ K I L +NYRST+ I+ AA+ +I++N +R + K + T N+ G KI E
Sbjct: 259 FEEDYPEAKTIFLEQNYRSTKNILNAANEVIKNNSER-KPKGLWTGNTSGDKIHYYEATT 317
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
E + +++ +I++H NG Y +AILYR +V + F + +P+ + G
Sbjct: 318 ERDEAEYVVREIMKHQRNGK----KYQDMAILYRTNAQSRVLEETFMKSNLPYTMVGGQK 373
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFI 706
FY +K ++ +++ LR DD RRV KR I S++ K
Sbjct: 374 FYDRKEIKDLLSYLRIIANSNDDISLRRVINI--------PKRGIGP----SSVDKIQAY 421
Query: 707 SAACDI--FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKY 764
+A D+ F A F + +KV T E IS + N++ Q+
Sbjct: 422 AAQNDLSMFDALAEVDF----IGLSKKV--TQECIS-----------FYDVMQNLIKQQE 464
Query: 765 LLEQRAVVDFDGGK-----LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
LE +V+ K +L + L S + L ++ +F+S E N +++
Sbjct: 465 FLEITEIVEEVLTKTGFRDMLEREQTLES--RSRLENIDEFMS---VPKDYEENTPLEEQ 519
Query: 820 GCINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
IN L + + I + + E+ +TL T+H +KGLE+ IVF+ E+
Sbjct: 520 SLINFLTDLSLVADIDDAQI----------EDGITLMTMHSAKGLEFPIVFIMGMEESLF 569
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKE 934
P + ++ ++EERR+ YVA+TRA + L++ + M+ Q PSRFL+E
Sbjct: 570 PHIRAIK---SDDEHEMQEERRICYVAITRAEETLYLTHATSRMLFGRPQSNMPSRFLRE 626
Query: 935 IPHHLREVQAEQSVQDQ 951
IP L E++++ + Q
Sbjct: 627 IPEDLLEIESKGKSKSQ 643
>gi|329121051|ref|ZP_08249682.1| ATP-dependent DNA helicase PcrA [Dialister micraerophilus DSM
19965]
gi|327471213|gb|EGF16667.1| ATP-dependent DNA helicase PcrA [Dialister micraerophilus DSM
19965]
Length = 735
Score = 242 bits (618), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 225/725 (31%), Positives = 356/725 (49%), Gaps = 117/725 (16%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
YL SLN+QQ A + P+LI+AG GSGK GI P ILA+TFT
Sbjct: 4 YLNSLNEQQ-RKAVEHLYGPVLIMAGAGSGKTKALTCRIAHMLNNGIKPEEILAITFTNK 62
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLE-RTSEFLIYGHGQQRRAI 348
AA EM++R+ ++VG A ++ + TFHSF ++ R E TS+F IY ++
Sbjct: 63 AAQEMKERVQNLVG-VIANKIWMYTFHSFGVRFLRREIENGGIYTSKFTIYDSDDSKQ-- 119
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLF-FSMSSFKLCQYNKFE 407
LL+N ++K ++ D +F +N + F S + L NKF
Sbjct: 120 -----LLKN----ILKELNLD------------EKMFQVNQVQFKISAAKNSLIGPNKFR 158
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ SG E KI D + E Y+ ++ NALD+ DL+ + ++L
Sbjct: 159 YEN------SGNFYNE--KISD-----VYELYDKYMKQNNALDFDDLLKLTTEMLYE-KN 204
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-RITIVGDDDQSIFSFNGADISGFD 526
+ +++Q +K I++DE+QDT+ QY + + +A + I VGD DQSI+S+ GAD+
Sbjct: 205 IREKWQKRFKYILIDEYQDTNHAQYLMAKYIAGEDCNICAVGDVDQSIYSWRGADLKNII 264
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
F+ D+ + I+L +NYRST+ I+ AA+S+I++N+ R KN+ T N G I +
Sbjct: 265 DFKSDYPQAEIIKLEQNYRSTKTILNAANSVIKNNIDRPS-KNLWTQNDKGDLIQRYKAS 323
Query: 587 NEDAQCAFIIDKIL-EHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHG 644
+E A+ FII+ I EH N CSYG+ AILYR +V + + ++ I + + G
Sbjct: 324 DEHAEADFIINTIKEEHDKNN----CSYGNFAILYRMNAQSRVLEESLVKKGIGYTMVGG 379
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCS 704
FY + +R I+A L+ DD R+ KR I + T++K
Sbjct: 380 TRFYDRAEIRDILAYLKVISNYKDDISLLRIINV--------PKRGIGSV----TVQKLL 427
Query: 705 FISAACDIFGAKISGTFKRSQLTQG--RKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
+ +I + + S L++ +K+ +I KLV SI + + +MV
Sbjct: 428 NFAKDKNISIFETLIMLEESSLSESVQKKIQKFSALIFKLVNE--SIQCDVFELIDMV-- 483
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTK--FTAAKEEGNVDQDKKG 820
L E + L+E ND +S Q ++ + LS F K +G
Sbjct: 484 --LKETEYIA------ALHESNDPKS--QSREENIGELLSVAKDFINEKPDG-------- 525
Query: 821 CINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
L F++ ++ + +++ T + VTL T+H +KGLE+ VF+A +E P
Sbjct: 526 ---TLSDFLEKVALVNDVDNYETVN----DKVTLMTVHSAKGLEFPFVFLAGMDEGIFPG 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQP---SRFLKEIP 936
V ++E +++EEERRL YVA+TRA++KLFI + + L+P SRFL+EIP
Sbjct: 579 VRSL---MDE--SALEEERRLCYVAITRAKEKLFITSSNIRTMYGQLKPFKESRFLEEIP 633
Query: 937 HHLRE 941
L E
Sbjct: 634 GDLIE 638
>gi|333896575|ref|YP_004470449.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333111840|gb|AEF16777.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 716
Score = 242 bits (618), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 226/719 (31%), Positives = 352/719 (48%), Gaps = 115/719 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LND+Q EA P+LI+AG GSGK +SP+NI+A+TFT
Sbjct: 4 LEGLNDRQKEAVVT-TEGPVLILAGAGSGKTRVLTHRIAYLVREKNVSPANIIAITFTNK 62
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+DR+ S++G +L +STFHS +++ R EK+ F+IY Q+ I
Sbjct: 63 AAKEMKDRVESLLG--YVGDLWVSTFHSACVRILRRDIEKIGYDRNFVIYDTQDQKTLIS 120
Query: 350 EAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
+ ++ L N+K +K G G + + M S F L N +
Sbjct: 121 DCIKELNLNDKQYTIK----------GMLGAISKAKDRM-----ISPDDFLLEFGNDYRN 165
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
+KI D + + Y L+ NALD+ D+I +++L ++
Sbjct: 166 ----------------KKIAD-----VYKLYQKKLKKDNALDFDDIIIKTIELFQKNEDI 204
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDS 527
+ YQD ++ I++DE+QDT+ QY + +LA R + +VGDDDQSI+ + GADI
Sbjct: 205 LRYYQDKFRYIMIDEYQDTNRPQYEFVNLLAKKYRNLCVVGDDDQSIYGWRGADIKNILD 264
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KD+ K I+L +NYRST+ I++AA+S+I +NVKR + K + TDN +G KI++ E N
Sbjct: 265 FEKDYPEAKVIKLEQNYRSTQVILDAANSVIDNNVKRKR-KRLWTDNKNGEKIVVWESQN 323
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG-VA 646
E + FII+ I S G Y A+LYR ++F+ AF IP+ + G +
Sbjct: 324 ERDEANFIIETIKNLVSEGR----KYSDFAVLYRTNAQSRIFEEAFMANDIPYKLVGALR 379
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFI 706
FY +K ++ IIA LR + DD +R+ + ++ + I ++K + S
Sbjct: 380 FYDRKEIKDIIAYLRILVNPYDDVSLKRIIN---VPKRGIGESTIASLEKYAVEHDTSMY 436
Query: 707 SAACDIFGAKISGTFKRSQLTQGRKVLLTL-EMISKLVRREPSISAVITSVANMVPQK-- 763
A I ++SG + RK L + E I L+ + ++ +T V + V K
Sbjct: 437 FA---IPHVEVSG--------RTRKALDSFKEFIDDLISQLDFMT--VTEVIDYVLDKTG 483
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
Y+ E +A DG E+++ R + ++ +F+ AA+E Q+K
Sbjct: 484 YIEELKA----DG----TEESEGR------IENINEFIG----AAREFMESSQEKS---- 521
Query: 824 VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
L+AF+ I+ T E SV L T+H +KGLE+ +VF+A E P F
Sbjct: 522 -LEAFLSGIT--LVSDIDTAGEIGE-SVVLMTLHSAKGLEFPVVFIAGMEEGIFPNSMSF 577
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM---MDANWQLLQPSRFLKEIPHHL 939
+EEERRL YV +TRA+++LF+ Y + Q SRF+ EIP L
Sbjct: 578 -----VYEHELEEERRLCYVGITRAKERLFMTYARNRNLYGKPQYNTASRFINEIPRDL 631
>gi|313893297|ref|ZP_07826872.1| ATP-dependent DNA helicase PcrA [Veillonella sp. oral taxon 158
str. F0412]
gi|313442193|gb|EFR60610.1| ATP-dependent DNA helicase PcrA [Veillonella sp. oral taxon 158
str. F0412]
Length = 729
Score = 242 bits (618), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 227/744 (30%), Positives = 340/744 (45%), Gaps = 137/744 (18%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
L LN +Q + A PLLI+AG GSGK G++P ILA+TFT A
Sbjct: 5 LTGLNKEQ-QQAVQHTEGPLLILAGAGSGKTKVLTVRIAHLLAQGVNPYEILAITFTNKA 63
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEK-LERTSEFLIYGHGQQRRAII 349
A EM+ R+ +VG A + +STFHSF + R L S F IY + I
Sbjct: 64 AKEMKSRVEGLVGD-VANRIWLSTFHSFCAKFLRFELNNFLGYNSNFTIYDTSDSQAVIK 122
Query: 350 EAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
A++ L ++K V G M A++ S + KL + F +
Sbjct: 123 AALKALNLDDKYYPV--------------GAMIAAI---------SDAKNKLLFASDFRK 159
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D + +K+ D + E Y LR NALD+ DL+ +VKLL + V
Sbjct: 160 QARDFYQ---------QKVAD-----VYEYYERELRKNNALDFDDLLLVAVKLLQSNEAV 205
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDS 527
+Y ++ +++DE+QDT+ QY L ++LASH + I +VGD DQSI+++ GADI
Sbjct: 206 LDKYSKRFRYVMIDEYQDTNHAQYLLAKLLASHWKNIAVVGDADQSIYAWRGADIQNILD 265
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KD+ N I+L +NYRST+ I++AA+++I++N R + KN+ TD + G+KI +
Sbjct: 266 FEKDYPNCTSIKLEQNYRSTKIILDAANAVIENNEGRPK-KNLWTDKTEGAKIQHFTAQS 324
Query: 588 EDAQCAFIIDKIL-EHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF-NIHGV 645
E + AFI D I +H +G YG +AILYR +V + A +R +P+ + G
Sbjct: 325 EHEEAAFIGDTIAKKHDIHG----VPYGDMAILYRTNAQSRVLEEALIKRALPYIMVGGT 380
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSF 705
FY +K ++ ++A LR DD R+ KR I
Sbjct: 381 KFYDRKEIKDVLAYLRVLYNPFDDLSLLRIINV--------PKRSI-------------- 418
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYL 765
GA + G + +TL + ++ S+ +K
Sbjct: 419 --------GATTVAKLQDYARANGTSLFMTLTQLH-----------LVDSIKGKTKEK-- 457
Query: 766 LEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC---- 821
LE+ ++ F L+ E D R+VL +L + D T + A EE QD+
Sbjct: 458 LEEFGILIF---TLVAEMED-RTVLD-ILESIID--RTGYLAQLEESTDPQDQARAENIG 510
Query: 822 --INVLKAFIDYISERETEHFRTQR---------HDNENSVTLTTIHQSKGLEWDIVFVA 870
++V K F D E F Q E+ VTL T+H +KGLE+ IVF+
Sbjct: 511 ELLSVAKDFQDTNPSGTVEDFLEQVALVNDVDSFEQEESKVTLMTLHAAKGLEFPIVFLG 570
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ--- 927
E P H E+ +EEERRL YV +TRA K+L+I +
Sbjct: 571 GLEEGLFP--HSRTLMNPEE---IEEERRLAYVGITRAEKELYISNATTRTVFGRTSSYL 625
Query: 928 PSRFLKEIPHHLRE-VQAEQSVQD 950
PSRF+ EIP L + ++A++ V D
Sbjct: 626 PSRFIDEIPEELVDGLRAKRKVPD 649
>gi|387138243|ref|YP_005694222.1| ATP-dependent DNA helicase pcrA [Corynebacterium pseudotuberculosis
CIP 52.97]
gi|349734721|gb|AEQ06199.1| ATP-dependent DNA helicase pcrA [Corynebacterium pseudotuberculosis
CIP 52.97]
Length = 846
Score = 242 bits (618), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 230/781 (29%), Positives = 351/781 (44%), Gaps = 135/781 (17%)
Query: 224 EKTDTIQTIKTQ---NMPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK------ 274
E+ T T K Q + P +Q LN QQ + A +PLLIVAG GSGK
Sbjct: 39 EEHRTWTTAKDQQPASTPAPADDLVQGLNPQQ-QQAVEHSGSPLLIVAGAGSGKTAVLTR 97
Query: 275 ---------GISPSNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRS 325
G+ P ILA+TFT AA+EMR+R+ +VG A + +STFHS +++ R
Sbjct: 98 RIAYLMRIRGVQPGQILAITFTNKAAAEMRERVAHLVGP-IASRMWVSTFHSTCVRILRE 156
Query: 326 HAEKLER-TSEFLIYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASL 384
A+ + S F IY +R + ++ + L +K+ + +L
Sbjct: 157 QAQLVAGLNSNFTIYDSDDSKRLLA----MISKDMNLDIKKFTPRLLGA----------- 201
Query: 385 FMMNAMLFFSMSSFKLCQYNKFERDGMDVAKA-SGKTPAEFRKIGDEIGAAILENYNGIL 443
+S+ K N+ VA+A S K P E AA+ Y L
Sbjct: 202 ---------GISNLK----NELISPATAVAEAESTKNPYE------TTVAAVYVEYQRRL 242
Query: 444 RSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA---- 499
R NA+D+ DLI +V++ P+V + Y+ ++ +++DE+QDT+ QY L+ L
Sbjct: 243 RQANAVDFDDLIGETVRIFKEHPQVTEYYRRRFRHVLIDEYQDTNHAQYVLIHELVGTGE 302
Query: 500 SHNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQ 559
+ + + +VGD DQSI++F GA I + F +D+ N + L +NYRST+ I+ AA+S+I
Sbjct: 303 TASELCVVGDSDQSIYAFRGATIRNIEEFERDYPNATTVLLEQNYRSTQTILNAANSVIS 362
Query: 560 HNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAIL 619
N R + K + T G I NE + FI +I A G Y +AI+
Sbjct: 363 QNENRRK-KKLWTALGSGDPITGYVADNEHDEARFIAQEIDALADKG----IGYSDMAIM 417
Query: 620 YRRQVSGKVFQTAFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFK- 677
YR S + + F IP+ + G FY +K +R +IA LR D RR+
Sbjct: 418 YRTNNSSRAVEDVFMRSGIPYKVVGGTRFYERKEIRDVIAYLRLLDNPEDTVSLRRIINT 477
Query: 678 ----------AFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLT 727
AFL L E + S A D ++S R
Sbjct: 478 PRRGIGDKAVAFLTLHSENQ--------------GVSLQQALIDASEGQVSLLGAR---- 519
Query: 728 QGRKVLLT-LEMISKL----------VRREPSISAVITSVANMVPQKYLLEQRAVVDFDG 776
GR + + M+S L + P I VI + ++ K LE+ D
Sbjct: 520 -GRNAISGFVNMMSGLRDSAAESVNEITGMPDIGNVIAQILDITGYKAELEKSN--DPQD 576
Query: 777 GKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN-------VDQDKKGCINVLKAFI 829
G L+ N+L SV + ++ + + AK +G+ V + + G L+AF+
Sbjct: 577 GARLDNLNELVSVAREFSSEAAN----QVAYAKMDGSELDDLAAVGEPEPGS---LQAFL 629
Query: 830 DYISERETEHFRTQRHDNENS-VTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVN 888
+ +S Q DNE VTL T+H +KGLE+ +VF+ + + P + G
Sbjct: 630 ERVSLVADAD---QIPDNEQGLVTLMTLHTAKGLEFPVVFLMGWEDGQFPHLRAL-GDPK 685
Query: 889 EKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW--QLLQP-SRFLKEIPHHLREVQAE 945
E + EERRL YV +TRARK L+I M+ ++W + P SRFL EIP L + + E
Sbjct: 686 E----LAEERRLAYVGITRARKALYITRAMLRSSWGNPVTNPASRFLTEIPQELLDWRRE 741
Query: 946 Q 946
+
Sbjct: 742 E 742
>gi|282859649|ref|ZP_06268751.1| putative ATP-dependent helicase PcrA [Prevotella bivia JCVIHMP010]
gi|424899176|ref|ZP_18322722.1| DNA/RNA helicase, superfamily I [Prevotella bivia DSM 20514]
gi|282587567|gb|EFB92770.1| putative ATP-dependent helicase PcrA [Prevotella bivia JCVIHMP010]
gi|388593390|gb|EIM33628.1| DNA/RNA helicase, superfamily I [Prevotella bivia DSM 20514]
Length = 839
Score = 242 bits (618), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 209/718 (29%), Positives = 329/718 (45%), Gaps = 103/718 (14%)
Query: 245 LQSLNDQQLEAA--CGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTT 288
L LN Q EA C + P L+VAG GSGK G+ P NILA+TFT
Sbjct: 3 LDDLNSYQREAVEYC---NGPSLVVAGAGSGKTRVLTYKIAYLLEKGLKPWNILALTFTN 59
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA EM++RI I L + TFHS ++ R+ A + S F IY R
Sbjct: 60 KAAREMKERIAKITHSHDTNRLYMGTFHSIFARILRAEAHHIGYNSNFTIYDESDSRS-- 117
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAML-FFSMSSFKLCQYNKFE 407
LL+N ++K + D ++ N++ F SM+ L ++
Sbjct: 118 -----LLKN----IIKAMGYD------------EKVYRPNSVHHFISMAKNHLITAEEYA 156
Query: 408 RDGMDVAK-ASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
D + + + + P + +I + Y + NA+D+ D++ + LL
Sbjct: 157 HDKLAIDRDKQARMPYIY---------SIYQAYEARCKQANAMDFDDILVNTYVLLRDNQ 207
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGF 525
EV Q+Y ++ I+VDE+QDT+ Q S++Q LA H R+ +VGDD QSI+SF GA+I
Sbjct: 208 EVRQKYATLFEYILVDEYQDTNFAQVSIIQQLAELHQRVCVVGDDYQSIYSFRGANIDNI 267
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
F++ F+ K +L RNYRST+ IV+AA+SL++HN ++ K V + G K+ K C
Sbjct: 268 LDFKQKFIGAKTFKLERNYRSTQLIVQAANSLMKHNERQIP-KEVYSQEDEGDKLQYKPC 326
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHG 644
++ D + A I+ K ++ A +Y AILYR + F+ R++ +P+ I G
Sbjct: 327 YS-DKEEALIVAKEIQRIKR--ADNATYSDFAILYRTNAQSRTFEDELRKQTVPYKIIGG 383
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCS 704
++FY++K ++ IIA R D+ +RR+ R I + +TI+K
Sbjct: 384 LSFYQRKEIKDIIAYFRLVANNDDEEAFRRIINY--------PARGIGN----TTIQKIV 431
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLT----LEMISKLVRREPSISAVITSVANMV 760
++ ++ +I L + L +E+IS + R + A + + +
Sbjct: 432 DCASKNNVSLWQIITNPSLYDLNVNKGTLAKINGFIELISNFIDRLSTTDAYL--LGKDI 489
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
Q + D L ++N L+ L+ + DF+ T +EEG D
Sbjct: 490 IQLSGISADIYSSTDPEALSRQEN-----LEEFLSAMQDFVET----GREEGRED----- 535
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
DY+ E + DN VTL T+H +KGLE+ VF+ E P
Sbjct: 536 ----YLYLTDYLQEVALYSDADKADDNSPKVTLMTVHAAKGLEFPTVFIVGLEENIFP-- 589
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSRFLKEI 935
+ +EEERRLLYVA+TRA + I + +Q PSRF+K+I
Sbjct: 590 ---SPMSASSKREIEEERRLLYVAITRAERHCIITNAKNRFRYGTMQFDNPSRFIKDI 644
>gi|408827314|ref|ZP_11212204.1| ATP-dependent DNA helicase II [Streptomyces somaliensis DSM 40738]
Length = 818
Score = 242 bits (617), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 214/723 (29%), Positives = 334/723 (46%), Gaps = 108/723 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LN+QQ AA +PLLIVAG GSGK + P ILA+TFT
Sbjct: 70 LEGLNEQQ-RAAVVHTGSPLLIVAGAGSGKTRVLTHRIAHLLAARDVHPGQILAITFTNK 128
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+ +VG A + + TFHS +++ R +++L TS F IY +R +
Sbjct: 129 AAGEMRERVEQLVGP-RAHAMWVMTFHSACVRILRRESKRLGFTSSFSIYDAADSKRLMA 187
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFK--LCQYNKFE 407
R L+ L KR + +S+ K L F
Sbjct: 188 LVCRDLD----LDPKRYPPKSFSA--------------------KISNLKNELVDEEAFA 223
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+D + KT AE ++ Y LR NALD+ D+I +V LL FP+
Sbjct: 224 DQAVDGFE---KTLAEAYRM-----------YQARLREANALDFDDIIMTTVHLLQAFPD 269
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN--------RITIVGDDDQSIFSFNG 519
V + Y+ ++ ++VDE+QDT+ QY+L++ L + + +VGD DQSI++F G
Sbjct: 270 VAEHYRRRFRHVLVDEYQDTNHAQYTLVRELVGPSGAVEHPPAELCVVGDADQSIYAFRG 329
Query: 520 ADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSK 579
A I F +D+ + I L +NYRST+ I+ AA+++I+ N R + KN+ T+ G++
Sbjct: 330 ATIRNILQFEEDYPDATTILLEQNYRSTQTILSAANAVIERNESR-RPKNLWTNAGAGAR 388
Query: 580 IIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIP 639
I E + F+ D+I G A G +A+ YR +VF+ F +P
Sbjct: 389 ITGYVADTEHDEAQFVADEIDRLTDAGEARA---GDVAVFYRTNAQSRVFEEVFIRVGLP 445
Query: 640 FN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIS 698
+ + GV FY +K VR ++A LR D P RR+ + ++ +R I+ ++
Sbjct: 446 YKVVGGVRFYERKEVRDVLAYLRVLANPEDAVPLRRILN---VPKRGIGERAEAMIEALA 502
Query: 699 TIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTL-EMISKLVRREPSISAVITSVA 757
+ +F A + A G RS T K TL E + +V + V+ +V
Sbjct: 503 LRERITFPQALKRVDEA--YGMAARS--TNAVKRFNTLMEDLRTVVESGAGPAVVLEAVL 558
Query: 758 NMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQD 817
YL E +A D +D LQ L A +F E+G + +
Sbjct: 559 ERT--GYLAELQASTD-------PQDETRIENLQELAAVAMEF---------EQGRGEDE 600
Query: 818 KKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
G L F++ ++ +++ D + +TL T+H +KGLE+ +VF+ +
Sbjct: 601 GTGT---LAEFLEQVALVADSDQIPDGDEDGDGVITLMTLHTAKGLEFPVVFLTGLEDGV 657
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSRFLK 933
P + G E +EEERRL YV +TRAR++L++ M + W PSRFL+
Sbjct: 658 FPHMRAL-GQTKE----LEEERRLAYVGITRARERLYLTRSSMRSAWGQPAYNPPSRFLE 712
Query: 934 EIP 936
EIP
Sbjct: 713 EIP 715
>gi|345882896|ref|ZP_08834348.1| hypothetical protein HMPREF0666_00524 [Prevotella sp. C561]
gi|345044233|gb|EGW48276.1| hypothetical protein HMPREF0666_00524 [Prevotella sp. C561]
Length = 851
Score = 242 bits (617), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 216/745 (28%), Positives = 341/745 (45%), Gaps = 133/745 (17%)
Query: 245 LQSLNDQQLEAA--CGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTT 288
L +LND Q EA C + P L++AG GSGK G++P NILA+TFT
Sbjct: 11 LSALNDSQREAVEYC---TGPSLVIAGAGSGKTRVLTYKIAYLLNKGLAPWNILALTFTN 67
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA EM++RI I A+ L + TFHS ++ R AE + S F IY R I
Sbjct: 68 KAAREMKERIAQITSANDAQRLYMGTFHSIFARILRREAEAIGFGSNFTIYDENDSRSLI 127
Query: 349 IEAVRLLE----NEKILVVKRI---STDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
++ L+ K V + + + L T + RA++
Sbjct: 128 KNIIKALDLDDKTYKPATVHNVISKAKNHLITAAQYAEDRAAI----------------- 170
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
ERD S + PA + I + Y+ R NA+D+ D++ + L
Sbjct: 171 -----ERD------RSARMPAIY---------MIYKMYDARCRQANAMDFDDILLYTFLL 210
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGA 520
+ ++Y ++ I+VDE+QDT+ Q S++ LA +H RI +VGDD QSI+SF GA
Sbjct: 211 FRDHKAIREKYGQQFEYILVDEYQDTNYAQVSIISQLAETHRRICVVGDDYQSIYSFRGA 270
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
+I F+ F + K +L RNYRST+ IV+AA+SL++HN ++ K+V + G K+
Sbjct: 271 NIDNILDFKNKFDDAKLFKLERNYRSTQLIVQAANSLMKHNERQIP-KDVYSKEKEGDKV 329
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
+ K C+++ + + +++ N C YGS AILYR + F+ FR++ IP+
Sbjct: 330 LYKPCYSDREEAMVVANELKRIKRNDN---CHYGSFAILYRTNAQSRSFEDEFRKQGIPY 386
Query: 641 N-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIST 699
I G++FY++K ++ IIA R D+ +RR+ R I + I
Sbjct: 387 KIIGGLSFYQRKEIKDIIAYFRLVSNPDDEEAFRRIINY--------PTRGIGNT-TIQK 437
Query: 700 IRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEM--------ISKLVRREPSISA 751
I +C+ +R+ ++ + +L +E ++K++ IS
Sbjct: 438 IVECA-----------------QRNAVSLWQTILNPIEYGLDVNKGTMTKILSFRTLISG 480
Query: 752 VITSV----ANMVPQKYLLEQRAVVDFDGGKLLNEDNDL--RSVLQYLLADVTDFLSTKF 805
I +V A + ++ + E D G +E DL R L+ ++ + F+ +
Sbjct: 481 FIKNVALKDAYELGKEIITESGISADIHSG---SEPEDLARRENLEEFMSAMQSFVDS-- 535
Query: 806 TAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWD 865
+EEG + NV DY+ E + D+ V+L TIH +KGLE+
Sbjct: 536 --GREEGREE-------NVY--LTDYLQEVALYTDADKEDDDTPKVSLMTIHAAKGLEFP 584
Query: 866 IVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQL 925
VFV E P G+ E +EEERRLLYVA+TRA + + +
Sbjct: 585 TVFVVGLEENIFPSPMSL-GSKRE----IEEERRLLYVAITRAEQHCILTNAKNRFRYGS 639
Query: 926 LQ---PSRFLKEIPHHLREVQAEQS 947
+Q PSRFL + L + E S
Sbjct: 640 MQFDNPSRFLNDFDPMLIHTENEGS 664
>gi|443492636|ref|YP_007370783.1| DNA-dependent helicase II UvrD1 [Mycobacterium liflandii 128FXT]
gi|442585133|gb|AGC64276.1| DNA-dependent helicase II UvrD1 [Mycobacterium liflandii 128FXT]
Length = 769
Score = 242 bits (617), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 207/733 (28%), Positives = 339/733 (46%), Gaps = 101/733 (13%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFT 287
+ L+ LN QQ +A + S PLLIVAG GSGK G+ ILA+TFT
Sbjct: 10 QLLEGLNPQQRQAVVHEGS-PLLIVAGAGSGKTAVLTRRIAYLIAARGVGVGQILAITFT 68
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRR 346
AA+EMR+R+ S+VG AK + +STFHS +++ R+ A ++ S F IY RR
Sbjct: 69 NKAAAEMRERVVSLVG-GRAKYMWVSTFHSTCVRILRNQAALIKGLNSNFSIYDADDSRR 127
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
+ +++ + L +KR S +L A + N ++ + L +
Sbjct: 128 LL----QMIGRDMGLDIKRYSPRLLAN--------AISNLKNELIDPDRAVSDLSE---- 171
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
D D+A+ AE+++ LR+ NALD+ DLI +V +L FP
Sbjct: 172 --DSDDLARTVASVYAEYQRR---------------LRAANALDFDDLIGETVGILQAFP 214
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-----------RITIVGDDDQSIF 515
++ Y+ ++ ++VDE+QDT+ QY L++ L ++ +VGD DQSI+
Sbjct: 215 DIAGHYRRRFRHVLVDEYQDTNHAQYVLVRELVGRGSEDEPGDVPPAQLCVVGDADQSIY 274
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I + F +D+ + I L +NYRST+ I+ AA+S+I N R + K + TD
Sbjct: 275 AFRGATIRNIEDFERDYPDATTILLEQNYRSTQNILSAANSVISRNSGRRE-KRLWTDAG 333
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G I+ NE + F+ ++I A +Y +A+ YR S + + F
Sbjct: 334 AGELIVGYVADNEHDEARFVAEEIDALAERDE---ITYNDVAVFYRTNNSSRSLEEVFIR 390
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
IP+ + GV FY +K +R I+A LR D RR+ ++ + D
Sbjct: 391 AGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSMRRILNT-------PRRGIGDRA 443
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+ + + + D A G + + +E++ +L R S +
Sbjct: 444 EACVAVYAENTGAGFSDALVAAAEGKVPMLNSRAAKAIAGFVELLDELRGRLDSSEGDLG 503
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
+ V ++ + D +L DN L L++ +F + + AA+ E
Sbjct: 504 ELVEAVLERTGYRRELESSTDPQELARLDN-----LNELVSVAHEFSTDRANAAEPE--P 556
Query: 815 DQDKKGCINVLKAFIDYIS-----ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFV 869
D + +L AF++ +S + EH VTL T+H +KGLE+ +VFV
Sbjct: 557 DAEDVPDTGMLAAFLERVSLVADTDDIPEH-------GAGVVTLMTLHTAKGLEFPVVFV 609
Query: 870 AKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW--QLLQ 927
+ P + + T + EERRL YV +TRAR++L++ ++ ++W +L
Sbjct: 610 TGWEDGMFPHMRALDDP-----TELSEERRLAYVGITRARQRLYLSRAIVRSSWGQPMLN 664
Query: 928 P-SRFLKEIPHHL 939
P SRFL+EIP L
Sbjct: 665 PESRFLREIPQEL 677
>gi|238019225|ref|ZP_04599651.1| hypothetical protein VEIDISOL_01089 [Veillonella dispar ATCC 17748]
gi|237863924|gb|EEP65214.1| hypothetical protein VEIDISOL_01089 [Veillonella dispar ATCC 17748]
Length = 729
Score = 242 bits (617), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 227/744 (30%), Positives = 340/744 (45%), Gaps = 137/744 (18%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
L LN +Q + A PLLI+AG GSGK G++P ILA+TFT A
Sbjct: 5 LTGLNKEQ-QQAVQHTEGPLLILAGAGSGKTKVLTVRIAHLLAQGVNPYEILAITFTNKA 63
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEK-LERTSEFLIYGHGQQRRAII 349
A EM+ R+ +VG A + +STFHSF + R + L S F IY + I
Sbjct: 64 AKEMKSRVEGLVGD-VANRIWLSTFHSFCAKFLRFELDNFLGYNSNFTIYDTSDSQAVIK 122
Query: 350 EAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
A++ L ++K V G M A++ S + KL + F +
Sbjct: 123 AALKALNLDDKYYPV--------------GAMIAAI---------SDAKNKLLFASDFRK 159
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D + +K+ D + E Y LR NALD+ DL+ +VKLL + V
Sbjct: 160 QARDFYQ---------QKVAD-----VYEYYERELRKNNALDFDDLLLVAVKLLQSNEAV 205
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDS 527
+Y ++ +++DE+QDT+ QY L ++LASH + I +VGD DQSI+++ GADI
Sbjct: 206 LDKYSKRFRYVMIDEYQDTNHAQYLLAKLLASHWKNIAVVGDADQSIYAWRGADIQNILD 265
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KD+ N I+L +NYRST+ I++AA+++I++N R + KN+ TD + G+KI +
Sbjct: 266 FEKDYPNCTSIKLEQNYRSTKIILDAANAVIENNEGRPK-KNLWTDKTEGAKIQHFIAQS 324
Query: 588 EDAQCAFIIDKIL-EHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
E + AFI D I +H +G YG +AILYR +V + A +R +P+ + G
Sbjct: 325 EHEEAAFIGDTIAKKHDIHG----VPYGDMAILYRTNAQSRVLEEALIKRALPYTMVGGT 380
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSF 705
FY +K ++ ++A LR DD R+ KR I
Sbjct: 381 KFYDRKEIKDVLAYLRVLYNPFDDLSLLRIINV--------PKRSI-------------- 418
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYL 765
GA + G + +TL + ++ ++ +K
Sbjct: 419 --------GATTVAKLQDYARANGTSLFMTLTQLH-----------LVDTIKGKTKEK-- 457
Query: 766 LEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN-- 823
LE+ ++ F L+ E D R+VL +L + D T + A EE QD+ N
Sbjct: 458 LEEFGILIF---TLVAEMED-RTVLD-ILESILD--RTGYLAQLEESTDPQDQARAENIG 510
Query: 824 ----VLKAFIDYISERETEHFRTQR---------HDNENSVTLTTIHQSKGLEWDIVFVA 870
V K F D E F Q E+ VTL T+H +KGLE+ IVF+
Sbjct: 511 ELLSVAKDFQDTNPTGTVEDFLEQVALVNDVDSFEQEESKVTLMTLHAAKGLEFPIVFLG 570
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ--- 927
E P H E+ +EEERRL YV +TRA K+L+I +
Sbjct: 571 GLEEGLFP--HSRTLMNPEE---IEEERRLAYVGITRAEKELYISNATTRTVFGRTSSYL 625
Query: 928 PSRFLKEIPHHLRE-VQAEQSVQD 950
PSRF+ EIP L + ++A++ V D
Sbjct: 626 PSRFIDEIPEELVDGLRAKRKVPD 649
>gi|91775555|ref|YP_545311.1| ATP-dependent DNA helicase Rep [Methylobacillus flagellatus KT]
gi|91709542|gb|ABE49470.1| ATP-dependent DNA helicase Rep [Methylobacillus flagellatus KT]
Length = 690
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 210/724 (29%), Positives = 338/724 (46%), Gaps = 129/724 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L S+N QQ EA + PLL++AG GSGK G +P I A+TFT
Sbjct: 24 LNSMNPQQREA-VKYLDGPLLVLAGAGSGKTRVITQKISYLIEQCGYAPKEIAAITFTNK 82
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G ++ AK LTI+TFHS LQ+ R AE L +F I
Sbjct: 83 AAREMQERVGQLLQGTNAKGLTIATFHSLGLQMLRQEAELLGYKPQFSILDSSDS----- 137
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
K +S + TTD +R + + +SS+K N F
Sbjct: 138 -------------FKILSDALATTDKQL--LRKTQW--------QISSWK----NAF--- 167
Query: 410 GMDVAKASGKTPAEFRKIGDE----IGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
P + + DE A + + Y L++ A+D+ DLI V+L
Sbjct: 168 ---------INPDQAAALADEELSHAAAKVYQVYQQTLKAYQAVDFDDLIKLPVELFEQH 218
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISG 524
P+ +++Q K +++DE+QDT+A QY L+++L R T VGDDDQ+I+ + GAD+
Sbjct: 219 PDALRKWQHKLKYLLIDEYQDTNACQYKLVKMLTGVEGRFTAVGDDDQAIYGWRGADVEN 278
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+DF K I+L +NYRST I+ AA+ +I +N K + K + ++ G I +
Sbjct: 279 LRQLTEDFSRLKVIKLEQNYRSTVRILRAANQVIANNPKLFE-KKLWSELGMGDLIQVSA 337
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH- 643
+E+ + ++ K+L H Y AILYR ++F+ R+ KIP+ I
Sbjct: 338 AKDEEHEAESVVMKLLAHKFEHRTKFLDY---AILYRGNHQARIFEQQLRQHKIPYTISG 394
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKIST 699
G +F+ K ++ +++ LR + DD P AF+ KK + ++ + + ++
Sbjct: 395 GQSFFDKAEIKDLVSYLR-LIANEDDDP------AFIRAATTPKKGIGNTTLERLGEYAS 447
Query: 700 IRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTL-EMISKL-VRREPSISA-VITSV 756
K S +F A G F+R+ + + LLT + I+++ VR E + V+ +
Sbjct: 448 AHKMS-------LFEAAFEGDFQRTMGNRQLEDLLTFCQFINRIQVRAEKDPAGEVLNDL 500
Query: 757 ANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQ 816
N + + L +D + + +N +SVL D +L+ K D+
Sbjct: 501 LNAINYEAFL-------YDTEEPRSAENKWKSVL-----DFVGWLTRK---------GDE 539
Query: 817 DKKGCINVLKAFIDYISERETEHFRTQRHDNE-NSVTLTTIHQSKGLEWDIVFVAKANET 875
D+K + L I +S E R D E ++V L+T+H SKGLE+ VF+ E
Sbjct: 540 DEKNLL-ALTQMISLMSMLEG------REDEEPDAVKLSTLHASKGLEYGHVFLVGCEEG 592
Query: 876 EIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFL 932
+P + +EEERRL+YV +TRA+K L I + ++ +PSRF+
Sbjct: 593 ILPHRESVDQG------KIEEERRLMYVGITRAQKSLHISWCRKRKRAGEFESCEPSRFI 646
Query: 933 KEIP 936
E+P
Sbjct: 647 AELP 650
>gi|255692465|ref|ZP_05416140.1| ATP-dependent DNA helicase PcrA [Bacteroides finegoldii DSM 17565]
gi|260621733|gb|EEX44604.1| UvrD/REP helicase [Bacteroides finegoldii DSM 17565]
Length = 789
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 217/752 (28%), Positives = 354/752 (47%), Gaps = 118/752 (15%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
Y++ LN+ Q AA P L++AG GSGK G +P NILA+TFT
Sbjct: 5 YIKELNESQC-AAVTYNDGPSLVIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQR---R 346
AA EM++RI VG A+ L + TFHS ++ R+ A+ + TS+F IY + R
Sbjct: 64 AAREMKERIARQVGAERARYLWMGTFHSIFSRILRAEAQYIGFTSQFTIYDTADSKSLLR 123
Query: 347 AIIEAVRLLEN--EKILVVKRIST---DMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
+II+ + L E + V RIS ++T G+
Sbjct: 124 SIIKEMGLDEKTYKPGTVQARISNAKNHLVTPTGYAA----------------------- 160
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
NK +G D+A K PA I D I Y R A+D+ DL+ + L
Sbjct: 161 --NKEAYEG-DMAV---KMPA----IRD-----IYTRYWERCRQAGAMDFDDLLVYTYIL 205
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGA 520
+PE+ YQD ++ I+VDE+QDT+ Q+S++ LA N+ + +VGDD QSI+SF GA
Sbjct: 206 FRDYPEILARYQDQFRYILVDEYQDTNYAQHSIVLQLAKENQHVCVVGDDAQSIYSFRGA 265
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
DI F K + N K +L +NYRST+ IV AA+SLI+ N ++ + K V ++ G I
Sbjct: 266 DIDNILYFTKTYPNTKVFKLEQNYRSTQTIVCAANSLIEKNERQIR-KAVFSEKEKGEAI 324
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
+ + +++ + + +K+ E Y AILYR ++F+ A R+R +P+
Sbjct: 325 GVFQAYSDVEEGDIVANKVAELRRE---YHYGYADFAILYRTNAQSRIFEEALRKRSMPY 381
Query: 641 NIHG-VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIST 699
I+G ++FY++K ++ +IA R + D+ ++R+ + + I +T
Sbjct: 382 KIYGGLSFYQRKEIKDVIAYFRLVVNPNDEEAFKRIIN---YPARGIGDTTVGKIISAAT 438
Query: 700 IRKCSFISAACD--IFGAKIS-GTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI--- 753
S S C+ +G I+ GT + QG + L+ + + + I I
Sbjct: 439 DHGVSLWSTLCEPLTYGLNINKGTHAK---LQGFRALIEGFITGQADKNAYEIGVDIIRQ 495
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
+ + N V Q D L ++N ++ L+ + DF + + +EEGN
Sbjct: 496 SGIMNDVCQ----------DTSPENLSRKEN-----IEELVNGMNDFCALR----QEEGN 536
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+ ++ + D S++ D+ +TL T+H +KGLE+ VFV
Sbjct: 537 PNISLTDFLSEIALLTDQDSDKA---------DDGEKITLMTVHSAKGLEFKNVFVVGLE 587
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSR 930
E P +G V + ++EEERRL YVA+TRA + ++ + + +L PSR
Sbjct: 588 ENLFP-----SGMVGDSPRALEEERRLFYVAITRAEEHCYLSFAKTRFRYGKMELGSPSR 642
Query: 931 FLKEIPHHLREVQAEQSVQDQHENIPEGTAQF 962
FL++I H ++ E + ++ EG +F
Sbjct: 643 FLRDIDIHYLKMPHEAGIS---RSVDEGAGRF 671
>gi|455647528|gb|EMF26482.1| ATP-dependent DNA helicase II [Streptomyces gancidicus BKS 13-15]
Length = 826
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 216/727 (29%), Positives = 329/727 (45%), Gaps = 110/727 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LND Q AA +PLLIVAG GSGK G+ P ILA+TFT
Sbjct: 70 LEGLNDNQ-RAAVVHSGSPLLIVAGAGSGKTRVLTHRIAHLLAERGVHPGQILAITFTNK 128
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A + + TFHS +++ R ++KL TS F IY +R +
Sbjct: 129 AAGEMKERVEQLVGP-RANAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMA 187
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R L+ L KR F SF + + + +
Sbjct: 188 LVCRDLD----LDPKR---------------------------FPPKSFS-AKISNLKNE 215
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+D + + F K + A Y LR NALD+ DLI +V LL FP+V
Sbjct: 216 LIDEEDFAAQATDGFEKTLAQAYAL----YQSRLREANALDFDDLIMTTVNLLRAFPDVA 271
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQIL---ASHN-------------RITIVGDDDQS 513
+ Y+ ++ ++VDE+QDT+ QY+L++ L AS + + +VGD DQS
Sbjct: 272 EHYRRRFRHVLVDEYQDTNHAQYALVRELVGGASEHPVDVPPEAEVPPAELCVVGDADQS 331
Query: 514 IFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTD 573
I++F GA I F +D+ + I L +NYRST+ I+ AA+++I+ N R + KN+ T+
Sbjct: 332 IYAFRGATIRNILQFEEDYPDATTILLEQNYRSTQTILSAANAVIERNESR-RPKNLWTN 390
Query: 574 NSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
G++I E + F+ D+I G A G +A+ YR +VF+ F
Sbjct: 391 AGAGARITGYVADTEHDEAQFVADEIDRLTDAGEAKA---GDVAVFYRTNAQSRVFEEIF 447
Query: 634 RERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID 692
+P+ + GV FY +K VR ++A LR D P RR+ + ++ R
Sbjct: 448 IRVGLPYKVVGGVRFYERKEVRDVLAYLRVLANPEDSVPLRRILN---VPKRGIGDRAEA 504
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV 752
ID ++ K SF A + A G RS R L +E + +V + V
Sbjct: 505 MIDALAQREKISFPQALRRVDEAY--GMAARSANAVKRFNTL-MEDLRTVVESGAGPTTV 561
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
+ ++ YL E +A D +D LQ L A +F +E G
Sbjct: 562 LEAILERT--GYLAELQASTD-------PQDETRIENLQELAAVALEF-------EQERG 605
Query: 813 NVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKA 872
+G L F++ ++ D + +TL T+H +KGLE+ +VF+
Sbjct: 606 ------EGETGTLADFLEQVALVADSDQIPDEEDGDGVITLMTLHTAKGLEFPVVFLTGM 659
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPS 929
+ P + G E +EEERRL YV +TRAR++L++ M + W PS
Sbjct: 660 EDGVFPHMRAL-GQTKE----LEEERRLAYVGITRARERLYLTRSTMRSAWGQPSYNPPS 714
Query: 930 RFLKEIP 936
RFL+EIP
Sbjct: 715 RFLEEIP 721
>gi|325846585|ref|ZP_08169500.1| putative ATP-dependent DNA helicase PcrA [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325481343|gb|EGC84384.1| putative ATP-dependent DNA helicase PcrA [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 729
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 200/741 (26%), Positives = 343/741 (46%), Gaps = 140/741 (18%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +LND+Q EA + PLL+VAG GSGK ++P+NILA+TFT
Sbjct: 3 LSNLNDKQKEAVLHEKG-PLLVVAGAGSGKTRVLTTSISYLIKEKFVNPTNILAITFTNK 61
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM++RI +++ + + L I TFHS ++ R + K+ + F IY Q+ +
Sbjct: 62 AANEMKERISNLLNEDVS-HLWIGTFHSICARILRMNINKIGYDNNFTIYDTNDQKTLVK 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
E ++ L + + K +N + F
Sbjct: 121 EIIKDLNYKDEISPKE--------------------ALNVISF----------------- 143
Query: 410 GMDVAKASGKTPAEFRKIG-----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLST 464
K +P EF I E I +NY N+LD+ DLI ++ L +
Sbjct: 144 ----CKNKSISPEEFLNINTFYAKQEEYYKIYKNYEKKKFEYNSLDFDDLILKTLDLFAI 199
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADIS 523
P+ + YQ+ ++ + VDE+QDT+ QY L++ + HN IT+VGD DQSI+SF GADI+
Sbjct: 200 DPDTLKYYQNKFEYVYVDEYQDTNKSQYELIKAIGKLHNNITVVGDADQSIYSFRGADIN 259
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
F KDF N K I+L +NYRST I+ A+ LI++N +R KN+ T + GS+++ K
Sbjct: 260 NILDFEKDFKNAKTIKLEQNYRSTSNIINVANKLIRNNTERKD-KNLWTSQNDGSEVLYK 318
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-I 642
+ E + F+ID+I ++G +AILYR ++F+ + + + +
Sbjct: 319 KSSVESEEGKFVIDEINSLLNDG----YKLKDMAILYRMNAQSRIFEEYLMKNLLDYKVV 374
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVF---------KAFLLLEKEEKKRVIDH 693
G+ FY +K ++ +I+ L+ + DD +R+ K LEKE K
Sbjct: 375 GGLKFYDRKEIKDLISYLKVLVNPKDDISLKRIINEPKKGIGNKTIENLEKEASKLGFSL 434
Query: 694 IDKISTIRKCSF----ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSI 749
+ + S + +C+ F +S TF + + +++I +++ + I
Sbjct: 435 TELVCDPSLFSNLPTKLKTSCEKFYNPLSETFDNYEDYK------IVDLIEEVLDKSGYI 488
Query: 750 SAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAK 809
A + + Y +E R+ +D ++ +F+S +AA+
Sbjct: 489 KA--------LEESYSVENRSRID----------------------NLNEFIS---SAAE 515
Query: 810 EEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFV 869
E N +D DY+ + ++++S++L TIH +KGLE+ + FV
Sbjct: 516 YESNNPEDN---------IHDYLENLSLLSDLDKTEESDDSISLMTIHSAKGLEFKVCFV 566
Query: 870 AKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQ---LL 926
++ P + ++EEERRL YVA+TRA +KL++ + +
Sbjct: 567 VGMDDGLFPSKRSIDEG------NIEEERRLCYVAITRAMEKLYLSSAEIRRQFGQAVYY 620
Query: 927 QPSRFLKEIPHHLREVQAEQS 947
+PSRFL EI ++++ +++
Sbjct: 621 KPSRFLSEIKSSIKQIDQDKT 641
>gi|410658052|ref|YP_006910423.1| ATP-dependent DNA helicase UvrD/PcrA [Dehalobacter sp. DCA]
gi|410661041|ref|YP_006913412.1| ATP-dependent DNA helicase UvrD/PcrA [Dehalobacter sp. CF]
gi|409020407|gb|AFV02438.1| ATP-dependent DNA helicase UvrD/PcrA [Dehalobacter sp. DCA]
gi|409023397|gb|AFV05427.1| ATP-dependent DNA helicase UvrD/PcrA [Dehalobacter sp. CF]
Length = 757
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 219/720 (30%), Positives = 345/720 (47%), Gaps = 96/720 (13%)
Query: 244 YLQSLNDQQLEAA-CGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTT 288
YL+ LN Q EA GD PLLI+AG GSGK G++P NILA+TFT
Sbjct: 3 YLKDLNPVQREAVESGD--GPLLILAGAGSGKTRVLTYRIAHLVAKGVNPWNILAITFTN 60
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSE-FLIYGHGQQRRA 347
AA EMRDR+ ++VG + + L ++TFHS +++ R L S F+IY G Q
Sbjct: 61 KAAKEMRDRVLALVG-SEGEGLWVATFHSTCVRILRREINALPGYSRSFVIYDAGDQ--- 116
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
+ V+K ++ D F RA L + S + KL + F
Sbjct: 117 ------------LTVLKECLKELNLDDKKFA-PRAVLATI------SDAKNKLLGPDAF- 156
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
AE R E AA Y L S NALD+ D+I +V++ P+
Sbjct: 157 -------------AAEARDFFTEKAAAAYRLYQRKLYSNNALDFDDIIMLTVRIFREDPD 203
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFD 526
V YQ+ ++ I+VDE+QDT+ QY L++ LA+ R + +VGDDDQS++ + GADI
Sbjct: 204 VLSYYQEKFRYILVDEYQDTNHAQYILIKQLAARYRNLCVVGDDDQSVYGWRGADIQNIL 263
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
F +D+ K ++L +NYRST+ I+ AA+ ++ +N R + K++ T+N+ G +I++ +
Sbjct: 264 DFERDYPEAKVLKLEQNYRSTQKILRAANEVVSNNYNR-KGKSLWTENTEGEEIVLFKAT 322
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GV 645
+E + F+ KI + A Y AILYR +V + F + IP+ I+ GV
Sbjct: 323 DEHDEARFVTGKIRDLADTEGR---RYNDFAILYRTNAQSRVLEEHFMKESIPYKIYSGV 379
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSF 705
FY + ++ I+A LR D + RV + ++ K +D I + + +
Sbjct: 380 KFYERLEIKDILAYLRLLNNPADRVSFARVIN---VPKRGIGKVSLDKILEYAEEQGMPV 436
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ--K 763
+ A ++ A I G T+G L + R+E +T + + +
Sbjct: 437 LDALAEV--AYIPGL-----QTKGVGTLTNFHELMLGFRQEAQKGVPLTELTEKIIRDTG 489
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
Y+ RA + + N+ SV ++ D+L E+ +++ D+ I
Sbjct: 490 YMASLRAENTVEAESRIENLNEFLSVTAEYDNNLQDYL--------EDPDLETDQNMLI- 540
Query: 824 VLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
L F++ +S E + F + E++V L T+H +KGLE+ +VF + P
Sbjct: 541 -LGGFLEQVSLVAEIDSF----DEAEDAVKLMTMHSAKGLEFPVVFAVGMEDGIFP---- 591
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHHL 939
+ + +EEERRL YV +TRAR+KLF+ M+ + Q PSRFLKEIP L
Sbjct: 592 -SSRSLLEQVLLEEERRLCYVTITRAREKLFLSTTEQRMVYGHIQSSVPSRFLKEIPEEL 650
>gi|302544595|ref|ZP_07296937.1| ATP-dependent DNA helicase PcrA [Streptomyces hygroscopicus ATCC
53653]
gi|302462213|gb|EFL25306.1| ATP-dependent DNA helicase PcrA [Streptomyces himastatinicus ATCC
53653]
Length = 823
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 209/719 (29%), Positives = 332/719 (46%), Gaps = 102/719 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ LN+QQ AA +PLLIVAG GSGK + P ILA+TFT
Sbjct: 71 LEGLNEQQ-RAAVEHTGSPLLIVAGAGSGKTRVLTHRIAYLLGTRHVHPGQILAITFTNK 129
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A + + TFHS +++ R ++KL TS F IY +R +
Sbjct: 130 AAGEMKERVEELVGP-RANAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMA 188
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
LV + + D F SF + + + +
Sbjct: 189 -----------LVCRDLDLDPKK--------------------FPPKSFS-AKISNLKNE 216
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+D +G+ F K E A Y LR NALD+ D+I +V LL FP+V
Sbjct: 217 LIDEETFAGQAADGFEKTLAEAYAM----YQSRLREANALDFDDIIMTTVNLLQAFPDVA 272
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQIL-------ASHNRITIVGDDDQSIFSFNGADI 522
+ Y+ ++ ++VDE+QDT+ QY+L++ L + + +VGD DQSI++F GA I
Sbjct: 273 EHYRRRFRHVMVDEYQDTNHAQYTLVRELVGTDTDEVAAGELCVVGDADQSIYAFRGATI 332
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
F +D+ + + I L +NYRST+ I+ AA+++I+ N R + KN+ T+ G+ I
Sbjct: 333 RNILQFEEDYPDARTILLEQNYRSTQTILSAANAVIERNENR-RPKNLWTEAGTGATITG 391
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN- 641
E + F+ D+I G A G +A+ YR +VF+ F +P+
Sbjct: 392 YVADTEHDEAQFVADEIDRLTDAGDARA---GDVAVFYRTNAQSRVFEEIFIRVGLPYKV 448
Query: 642 IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
+ GV FY +K VR ++A LR D P RR+ + ++ R ID +++
Sbjct: 449 VGGVRFYERKEVRDVLAYLRVLANPEDAVPLRRIMN---VPKRGIGDRAEAMIDALASRE 505
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
K +F A + A G RS R L +E + +V + V+ +V
Sbjct: 506 KITFPQALRRVDEAY--GMAARSANAVKRFNTL-MEELRTIVESGAGPATVLEAVLERT- 561
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
YL E +A D +D LQ L + +F E + ++ G
Sbjct: 562 -GYLAELQASTD-------PQDETRIENLQELASVALEF----------EQDRGEENPGT 603
Query: 822 INVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
L F++ ++ +++ + + +TL T+H +KGLE+ +VF++ + P +
Sbjct: 604 ---LAEFLEQVALVADSDQIPDEDEEGTGVITLMTLHTAKGLEFPVVFLSGMEDGVFPHM 660
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSRFLKEIP 936
G E +EEERRL YV +TRAR++L++ M + W PSRFL+EIP
Sbjct: 661 RAL-GQTKE----LEEERRLAYVGITRARERLYLSRSTMRSAWGTPSYNPPSRFLEEIP 714
>gi|73662195|ref|YP_300976.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72494710|dbj|BAE18031.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 738
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 202/735 (27%), Positives = 353/735 (48%), Gaps = 117/735 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ +ND+Q +A PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 VNKMNDEQSQA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ R+ ++VG+ A+ L +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAKEMKARVETLVGEQ-AQVLWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I K M ++S+ K N+
Sbjct: 123 D---VLKNENIDSKK---------------------FEPRMFIGAISNLK----NEL--- 151
Query: 410 GMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP + +K +++ A + + Y L ALD+ DLI +++L
Sbjct: 152 ---------KTPEDAQKEANDYHEQMVATVYKGYQRQLSRNEALDFDDLIMVTIRLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
P+V YQ+ ++ I VDE+QDT+ QY+L+++LA+ + +VGD DQSI+ + GADI
Sbjct: 203 PDVLDYYQNKFQYIHVDEYQDTNKAQYTLVKLLAAKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ K I L +NYRST+ I+ AA+ +I++N +R + K + T N+ G KI E
Sbjct: 263 ILSFEEDYPEAKTIFLEQNYRSTKNILNAANEVIKNNSER-KPKGLWTGNTSGDKIHYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++H NG Y +AILYR +V + F + +P+ +
Sbjct: 322 ATTERDEAEYVVREIMKHQRNGK----KYQDMAILYRTNAQSRVLEETFMKSNLPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
G FY +K ++ +++ LR DD RRV + ++ +D I +
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLRRVIN---IPKRGIGPSSVDKIQAYAAQNDL 434
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREP--SISAVITSVANMVP 761
S A ++ +S ++TQ + + +++ L++++ I+ ++ V
Sbjct: 435 SMFDALAEVDFIGLS-----KKVTQ--ECISFYDVMQNLIKQQEFLEITEIVEEVLTKTG 487
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
+ +LE+ ++ RS L+ ++ +F+S E N +++
Sbjct: 488 YRDMLEREQTLES------------RSRLE----NIDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I + + E+ +TL T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDDAQI----------EDGITLMTMHSAKGLEFPIVFIMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ ++ ++EERR+ YVA+TRA + L++ + M+ Q PSRFL+EIP
Sbjct: 579 IRAIK---SDDEHEMQEERRICYVAITRAEETLYLTHATSRMLFGRPQSNMPSRFLREIP 635
Query: 937 HHLREVQAEQSVQDQ 951
L E +++ + Q
Sbjct: 636 EDLLENESKGKSKSQ 650
>gi|312112464|ref|YP_003990780.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y4.1MC1]
gi|336236933|ref|YP_004589549.1| ATP-dependent DNA helicase PcrA [Geobacillus thermoglucosidasius
C56-YS93]
gi|311217565|gb|ADP76169.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y4.1MC1]
gi|335363788|gb|AEH49468.1| ATP-dependent DNA helicase PcrA [Geobacillus thermoglucosidasius
C56-YS93]
Length = 730
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 220/721 (30%), Positives = 343/721 (47%), Gaps = 103/721 (14%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFT 287
K L +LN+QQ +AA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 7 KLLANLNEQQ-QAAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLAEKQVAPWNILAITFT 65
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM++R+ +++G A A+E+ ISTFHS +++ R +++ F I Q
Sbjct: 66 NKAAREMKERVQALLGGA-AEEIWISTFHSMCVRILRRDIDRIGIDRNFSILDTTDQ--- 121
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
+ +L+N IL K I G + S + +L KF
Sbjct: 122 ----LSVLKN--ILKEKNIDPKKFDPRSILGTI-------------SSAKNELLSPEKF- 161
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
AK +G ++I + + E Y L +ALD+ DLI +++L PE
Sbjct: 162 ------AKKAGNYY-------EKIVSDVYEEYQKRLLRNHALDFDDLIMTTIQLFERVPE 208
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFD 526
V + YQ ++ I +DE+QDT+ QY L+++LAS I +VGD DQSI+ + GADI
Sbjct: 209 VLEHYQYKFQYIHIDEYQDTNRAQYMLVKMLASRFQNICVVGDADQSIYRWRGADIQNIL 268
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
SF KD+ N K I L +NYRST+ I++AA+ +I++NV R + K + T+N G KI+ E
Sbjct: 269 SFEKDYPNAKVILLEQNYRSTKRILQAANEVIENNVNR-KPKKLWTENPEGQKIVYYEAM 327
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGV 645
NE + F+ KI E+ +G Y A+LYR +V + + IP+ I G+
Sbjct: 328 NEADEAQFVAGKIKEYVESGKR---RYSDFAVLYRTNAQSRVMEEVLLKSNIPYQIVGGL 384
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSF 705
FY +K ++ I+A LR DD R+ + ++ +D I ++ + S
Sbjct: 385 KFYDRKEIKDILAYLRVIANPNDDISLLRIIN---VPKRGIGASTLDKIVNYASENELSV 441
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYL 765
A ++ +S S L + R++L + + V SV +V +
Sbjct: 442 FEALGELEHIGLSARIAAS-LLEFRRMLEQWGQLQEYV-----------SVTELVEE--- 486
Query: 766 LEQRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINV 824
V+D G + +L +N L + Q L ++ +FLS K NV +DK
Sbjct: 487 -----VLDKSGYREMLKAENTLEA--QSRLENIDEFLSV----TKHFENVSEDKS----- 530
Query: 825 LKAFI-DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
L AF+ D + + ++ ++V L T+H +KGLE+ +VF+ E P
Sbjct: 531 LIAFLTDLALISDIDQLNDADGEDGDAVVLMTLHSAKGLEFPVVFLIGMEEGIFPHSRSL 590
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSRFLKEIPHHLR 940
+EEERRL YV +TRA ++LF+ M + + SRF+ EIP L
Sbjct: 591 EDE-----DEMEEERRLAYVGITRAEEELFLTSAQMRTLFGYTNMNAVSRFIHEIPEELV 645
Query: 941 E 941
E
Sbjct: 646 E 646
>gi|291451787|ref|ZP_06591177.1| ATP-dependent DNA helicase II [Streptomyces albus J1074]
gi|421742941|ref|ZP_16181036.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. SM8]
gi|291354736|gb|EFE81638.1| ATP-dependent DNA helicase II [Streptomyces albus J1074]
gi|406688636|gb|EKC92562.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. SM8]
Length = 840
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 223/742 (30%), Positives = 332/742 (44%), Gaps = 120/742 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LND+Q AA +PLLIVAG GSGK G+ P ILA+TFT
Sbjct: 72 LDGLNDEQ-RAAVVHSGSPLLIVAGAGSGKTRVLTHRIAHLLGERGVHPGQILAITFTNK 130
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A + +STFHS +++ R ++ L TS F IY +R +
Sbjct: 131 AAGEMKERVEELVGP-RANAMWVSTFHSACVRILRRESKHLGFTSSFSIYDAADSKRLMA 189
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R L+ L KR T A + + L F + FE
Sbjct: 190 LVCRDLD----LDPKRYPPKSFT---------AKVSNLKNELV-DPEDFAAQAADGFE-- 233
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
KT A+ + Y LR NALD+ D+I +V LL FP+V
Sbjct: 234 ---------KTLAQAYTM-----------YQSRLREANALDFDDIIMTTVHLLQAFPDVA 273
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQIL----------------ASHN---------RI 504
Y+ ++ ++VDE+QDT+ QYSL++ L + H+ +
Sbjct: 274 DHYRRRFRHVLVDEYQDTNHAQYSLVRELVGTPADRPVDVPEGAESDHDPLHPAPEPAEL 333
Query: 505 TIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKR 564
+VGD DQSI++F GA I F +D+ N I L RNYRST+ I+ AA+++I+ N R
Sbjct: 334 CVVGDADQSIYAFRGATIRNILQFEEDYPNATTILLERNYRSTQTILTAANAVIERNENR 393
Query: 565 CQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQV 624
+ KN+ TD G+ I E + F+ ++I G A G IA+ YR
Sbjct: 394 -RPKNLWTDAGAGAGITGYVADTEHDEAQFVAEEIDRLTDAGDAKA---GDIAVFYRTNA 449
Query: 625 SGKVFQTAFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLE 683
+VF+ F +P+ + GV FY +K VR ++A LR D RR+ +
Sbjct: 450 QSRVFEEIFIRVGLPYKVVGGVRFYERKEVRDVLAYLRVLANPEDSVSLRRILNT---PK 506
Query: 684 KEEKKRVIDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLV 743
+ R ID +S + SF A + A G RS R L +E + +V
Sbjct: 507 RGIGDRAEAMIDALSQRERVSFPQALRRVDEAY--GMAARSANAVKRFNTL-MEELRTVV 563
Query: 744 RREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST 803
+ V+ +V M YL E +A D +D LQ L A +F
Sbjct: 564 ESGAGPATVLEAV--MERTGYLAELQASTD-------PQDETRIENLQELAAVALEFEQD 614
Query: 804 KFTAAKEEGNVDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGL 862
+ ++EEG L F++ ++ +++ + D +TL T+H +KGL
Sbjct: 615 R---SEEEG---------AGTLPEFLEQVALVADSDQIPDEDEDGSGVITLMTLHTAKGL 662
Query: 863 EWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDAN 922
E+ +VF+ + P + G E +EEERRL YV +TRAR++L++ M +
Sbjct: 663 EFPVVFLTGMEDGVFPHMRAL-GQTKE----LEEERRLAYVGITRARERLYLTRAAMRSA 717
Query: 923 W---QLLQPSRFLKEIP-HHLR 940
W PSRFL+EIP HL+
Sbjct: 718 WGQPSYNPPSRFLEEIPEQHLK 739
>gi|392958497|ref|ZP_10324007.1| ATP-dependent DNA helicase PcrA [Bacillus macauensis ZFHKF-1]
gi|391875523|gb|EIT84133.1| ATP-dependent DNA helicase PcrA [Bacillus macauensis ZFHKF-1]
Length = 745
Score = 241 bits (615), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 220/726 (30%), Positives = 346/726 (47%), Gaps = 111/726 (15%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFT 287
K L LN +Q +AA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 7 KLLTGLNPEQ-KAAVKHTEGPLLIMAGAGSGKTRVLTHRIAYLMMEKEVAPWNILAITFT 65
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM+DR+ +I G A+++ ISTFHS +++ R +++ + F I
Sbjct: 66 NKAAREMKDRVAAITG-PVAEDIWISTFHSMCVRILRRDIDRIGISRNFSI--------- 115
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
L +++ V+K I D F RA L ++++
Sbjct: 116 ------LDSTDQLSVIKSILKDQNIDPKKFE-PRAILGTISSL----------------- 151
Query: 408 RDGMDVAKASGKTPAEF--RKIG--DEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
K KT A+F K+G D + + + Y L+ ALD+ DLI ++ L
Sbjct: 152 -------KNELKTSADFAKEKVGPFDSVVFDVYQEYEKRLKKNAALDFDDLIMTTIHLFK 204
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADI 522
PEV Q YQ ++ I VDE+QDT+ QY L+++LA R + +VGD DQSI+ + GADI
Sbjct: 205 RVPEVLQFYQRKFQYIHVDEYQDTNRAQYMLVKLLADRFRNLCVVGDSDQSIYGWRGADI 264
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
+ SF KD+ + K I L +NYRS++ I++AA+ +I++NV R + KN+ TD S G I+
Sbjct: 265 ANILSFEKDYDDAKVILLEQNYRSSKTILDAANKVIENNVNR-KAKNLWTDRSEGKNIVY 323
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI 642
+ E + ++ KI E +G SY IA+LYR ++ + + IP+NI
Sbjct: 324 YQGDTEHDEGHYVAGKIREMTMSGTR---SYADIAVLYRTNAQSRIIEEVLMKSNIPYNI 380
Query: 643 -HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
GV FY +K ++ I+A LR DD R+ KR I ST+
Sbjct: 381 VGGVKFYDRKEIKDILAYLRLISNPNDDISMTRIINV--------PKRGIGA----STVD 428
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
K A D+ + + Q+ + + L S+L+ + + + SV +V
Sbjct: 429 KILQYGADNDL--SMFQALQEVEQIGLAARFVNVLREFSQLITQWNQMQEFL-SVTELVE 485
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
+ ++E+ D +L D L S Q + ++ +FLS D +KK
Sbjct: 486 E--VIEKTGYRD-----MLKADKSLES--QSRIENIDEFLSV---------TTDFEKKQE 527
Query: 822 INVLKAFID---YISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
L AF+ +++ + + ++ +V L T+H +KGLE+ +VF+ E P
Sbjct: 528 DKSLVAFLTDLALVADIDRLDEGGEEEKSKETVILMTLHSAKGLEFPVVFLIGLEEGVFP 587
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQL--LQP-SRFLKEI 935
+ A+ E + +EEERRL YV +TRA ++LF+ M + + P SRF+ EI
Sbjct: 588 ----HSRALFED-SEMEEERRLAYVGITRAEEELFLSNARMRTLYGRTNMNPVSRFIAEI 642
Query: 936 PHHLRE 941
P L E
Sbjct: 643 PEELIE 648
>gi|288802440|ref|ZP_06407879.1| ATP-dependent helicase PcrA [Prevotella melaninogenica D18]
gi|288334968|gb|EFC73404.1| ATP-dependent helicase PcrA [Prevotella melaninogenica D18]
Length = 851
Score = 241 bits (615), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 219/744 (29%), Positives = 341/744 (45%), Gaps = 123/744 (16%)
Query: 239 DEYSKYLQSLNDQQLEAA--CGDMSTPLLIVAGPGSGK--------------GISPSNIL 282
D+ L +LN+ Q EA C + P L++AG GSGK G++P NIL
Sbjct: 5 DKEEAILAALNESQREAVEYC---TGPSLVIAGAGSGKTRVLTYKIAYLLNKGLAPWNIL 61
Query: 283 AMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHG 342
A+TFT AA EM++RI I A+ L + TFHS ++ R E + S F IY
Sbjct: 62 ALTFTNKAAREMKERIAQITTAKDAQHLYMGTFHSIFARILRREGEAIGFGSNFTIYDEN 121
Query: 343 QQRRAIIEAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
R I V+ L+ +EK Y AS+ F SM+ L
Sbjct: 122 DSRSLIKSIVKALDLDEKT------------------YKPASVHN-----FISMAKNHLI 158
Query: 402 QYNKFERDGMDVAK-ASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVK 460
+++ D + + S + PA I + Y R NA+D+ D++ +
Sbjct: 159 TASEYAEDRAAIERDRSTRMPAIH---------MIYKAYEARCRQANAMDFDDILLYTFL 209
Query: 461 LLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNG 519
L E+ ++Y ++ I+VDE+QDT+ Q S++ LA +H RI +VGDD QSI+SF G
Sbjct: 210 LFRDNKEIREKYGQQFEYILVDEYQDTNYAQVSIISQLAETHRRICVVGDDYQSIYSFRG 269
Query: 520 ADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSK 579
A+I F+ F + K +L RNYRST+ IV+AA+SL++HN ++ K+V + + G K
Sbjct: 270 ANIDNILDFKNKFEDAKLFKLERNYRSTQLIVQAANSLMKHNERQIP-KDVFSKEAEGDK 328
Query: 580 IIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIP 639
I+ K C+++ + + +++ N C YG+ AILYR + F+ FR++ IP
Sbjct: 329 ILYKPCYSDREEAMVVANELKRIKRNDD---CDYGNFAILYRTNAQSRSFEDEFRKQGIP 385
Query: 640 FN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIS 698
+ I G++FY++K ++ IIA R D+ +RR+ R I + I
Sbjct: 386 YKIIGGLSFYQRKEIKDIIAYFRLVSNPDDEEAFRRIINY--------PTRGIGNT-TIQ 436
Query: 699 TIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEM--------ISKLVRREPSIS 750
I C+ +R+ ++ +L ++ ++KL IS
Sbjct: 437 KIIDCA-----------------QRNSVSLWETILNPIQYGLDVNKGTMTKLFAFRTLIS 479
Query: 751 AVITSVA---NMVPQKYLLEQRAV-VDFDGGKLLNEDNDL--RSVLQYLLADVTDFLSTK 804
I +VA K ++E+ V D G +E DL R L+ ++ + F+ +
Sbjct: 480 GFIKNVALKDAYELGKEIIEESGVSADIRSG---SEPEDLARRENLEEFMSAMQGFVDS- 535
Query: 805 FTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEW 864
+EEG + NV DY+ E + D+ VTL TIH +KGLE+
Sbjct: 536 ---GREEGREE-------NVY--LTDYLQEVALYTDADKEDDDTPKVTLMTIHAAKGLEF 583
Query: 865 DIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQ 924
VFV E P + +EEERRLLYVA+TRA + + +
Sbjct: 584 PTVFVVGLEENIFP-----SPMSASSKREIEEERRLLYVAITRAERHCILTNAKNRFRYG 638
Query: 925 LLQ---PSRFLKEIPHHLREVQAE 945
+Q PSRFL + L V+ E
Sbjct: 639 TMQIDNPSRFLNDFDPALIHVEDE 662
>gi|219667567|ref|YP_002458002.1| ATP-dependent DNA helicase PcrA [Desulfitobacterium hafniense
DCB-2]
gi|219537827|gb|ACL19566.1| ATP-dependent DNA helicase PcrA [Desulfitobacterium hafniense
DCB-2]
Length = 755
Score = 241 bits (615), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 209/727 (28%), Positives = 339/727 (46%), Gaps = 110/727 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
L+ LN Q +A PLLI+AG GSGK G+ P +ILA+TFT A
Sbjct: 4 LEDLNPVQRQA-VEHREGPLLILAGAGSGKTRVLTYRIAHLIAQGVEPWHILAITFTNKA 62
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSE-FLIYGHGQQRRAII 349
A EMRDR+ S+VG + + L ++TFHS +++ RS L S F+IY G Q I
Sbjct: 63 AQEMRDRVYSLVG-SEGRGLWVATFHSACVRILRSEIGYLPGYSRSFVIYDSGDQLALIK 121
Query: 350 EAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
++ L +EK + I S + KL F R
Sbjct: 122 SCMKELNLDEKKFAPRAIEA-----------------------VISDAKNKLLTPEDFSR 158
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D + + + E Y L + NALD+ D+I +V+L PEV
Sbjct: 159 RAKDYFEQKAER--------------VYELYLKKLLANNALDFDDIIMLTVRLFRENPEV 204
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDS 527
+YQD ++ I+VDE+QDT+ QY+L+ +LA R + +VGDDDQSI+ F GAD+
Sbjct: 205 LSQYQDKFRYILVDEYQDTNHAQYALVNLLAKKYRNLCVVGDDDQSIYMFRGADVQNILD 264
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F +D+ K ++L +NYRST+ I++AA+S++Q+N +R + K++ T+N G I+ N
Sbjct: 265 FERDYPEAKTLKLEQNYRSTKSILQAANSVVQNNTERKE-KSLWTENEDGQPIVYYVADN 323
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVA 646
E + ++ ++I + N + A+LYR +V + F + IP+ I G+
Sbjct: 324 EHDEARYMGERI-QRLLNVEGR--KFNEFAVLYRTNAQSRVIEERFMKEGIPYRIFSGLK 380
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLL-LEKEEKKRVIDHIDKISTIRKCSF 705
FY + ++ I+A LR D + RV L + ++++D+ ++
Sbjct: 381 FYERMEIKDILAYLRILHNPADQVSFSRVLNVPKRGLGESTLEKILDYANE--------- 431
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYL 765
+ A + + ++ +K LL + + +R +++A +SV +V + +
Sbjct: 432 --QEMPVLDAIMEADYIPELQSRAKKPLLAFAHLMQELR---ALAAAESSVTKLVEE--V 484
Query: 766 LEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKF----------TAAKEEGNVD 815
L++ D N +D + L ++ +FLS TA +EG D
Sbjct: 485 LKRTGYWD-------NLVSDKSPEAEARLENLREFLSVTAEYDEKADNYETAVVQEGIED 537
Query: 816 QDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANET 875
+ L F++ +S Q D +V + TIH +KGLE+ +VF+ E
Sbjct: 538 ----ALVPGLTGFLEQVSLVAQIDSLDQADD---AVVMMTIHSAKGLEFPVVFLGGMEEG 590
Query: 876 EIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFL 932
P V + EERRL YVA+TRAR++L++ Y M+ Q +PS F
Sbjct: 591 IFPSSRSMLDPV-----LLAEERRLCYVAITRARERLYLAYAQQRMLYGRTQYNRPSEFF 645
Query: 933 KEIPHHL 939
+EIP H+
Sbjct: 646 QEIPTHV 652
>gi|423077068|ref|ZP_17065775.1| ATP-dependent DNA helicase PcrA [Desulfitobacterium hafniense DP7]
gi|361851779|gb|EHL04075.1| ATP-dependent DNA helicase PcrA [Desulfitobacterium hafniense DP7]
Length = 755
Score = 241 bits (615), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 209/727 (28%), Positives = 338/727 (46%), Gaps = 110/727 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
L+ LN Q +A PLLI+AG GSGK G+ P +ILA+TFT A
Sbjct: 4 LEDLNPVQRQA-VEHREGPLLILAGAGSGKTRVLTYRIAHLIAQGVEPWHILAITFTNKA 62
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSE-FLIYGHGQQRRAII 349
A EMRDR+ S+VG + + L ++TFHS +++ RS L S F+IY G Q I
Sbjct: 63 AQEMRDRVYSLVG-SEGRGLWVATFHSACVRILRSEIGYLPGYSRSFVIYDSGDQLALIK 121
Query: 350 EAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
++ L +EK + I S + KL F R
Sbjct: 122 SCMKELNLDEKKFAPRAIEA-----------------------VISDAKNKLLTPEDFSR 158
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D + + + E Y L + NALD+ D+I +V+L PEV
Sbjct: 159 RAKDYFEQKAER--------------VYELYQKKLLANNALDFDDIIMLTVRLFRENPEV 204
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDS 527
+YQD ++ I+VDE+QDT+ QY+L+ +LA R + +VGDDDQSI+ F GAD+
Sbjct: 205 LSQYQDKFRYILVDEYQDTNHAQYALVNLLAKKYRNLCVVGDDDQSIYMFRGADVQNILD 264
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F +D+ K ++L +NYRST+ I++AA+S++Q+N R + K++ T+N G I+ N
Sbjct: 265 FERDYPEAKTLKLEQNYRSTKSILQAANSVVQNNRSRKE-KSLWTENEDGQPIVYYVADN 323
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVA 646
E + ++ ++I + N + A+LYR +V + F + IP+ I G+
Sbjct: 324 EHDEARYMGERI-QRLLNVEGR--KFNEFAVLYRTNAQSRVIEERFMKEGIPYRIFSGLK 380
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLL-LEKEEKKRVIDHIDKISTIRKCSF 705
FY + ++ I+A LR D + RV L + ++++D+ ++
Sbjct: 381 FYERMEIKDILAYLRILHNPADQVSFSRVLNVPKRGLGESTLEKILDYANE--------- 431
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYL 765
+ A + + ++ +K LL + + +R +++A +SV +V + +
Sbjct: 432 --QEMPVLDAIMEADYIPELQSRAKKPLLAFAHLMQELR---ALAAAESSVTKLVEE--V 484
Query: 766 LEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKF----------TAAKEEGNVD 815
L++ D N +D + L ++ +FLS TA +EG D
Sbjct: 485 LKRTGYWD-------NLVSDKSPEAEARLENLREFLSVTAEYDEKADNYETAVVQEGIED 537
Query: 816 QDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANET 875
+ L F++ +S Q D +V + TIH +KGLE+ +VF+ E
Sbjct: 538 ----ALVPGLAGFLEQVSLVAQIDSLDQADD---AVVMMTIHSAKGLEFPVVFLGGMEEG 590
Query: 876 EIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFL 932
P V + EERRL YVA+TRAR++L++ Y M+ Q +PS F
Sbjct: 591 IFPSSRSMLDPV-----LLAEERRLCYVAITRARERLYLAYAQQRMLYGRTQYNRPSEFF 645
Query: 933 KEIPHHL 939
+EIP H+
Sbjct: 646 QEIPTHV 652
>gi|401680004|ref|ZP_10811928.1| ATP-dependent DNA helicase PcrA [Veillonella sp. ACP1]
gi|400219131|gb|EJO50002.1| ATP-dependent DNA helicase PcrA [Veillonella sp. ACP1]
Length = 729
Score = 241 bits (615), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 227/744 (30%), Positives = 338/744 (45%), Gaps = 137/744 (18%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
L LN +Q + A PLLI+AG GSGK G++P ILA+TFT A
Sbjct: 5 LDGLNREQ-QQAVQHTEGPLLILAGAGSGKTKVLTVRIAYLLAQGVNPYEILAITFTNKA 63
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEK-LERTSEFLIYGHGQQRRAII 349
A EM+ R+ +VG A + +STFHSF + R + L S F IY + I
Sbjct: 64 AKEMKSRVEGLVGD-VANRIWLSTFHSFCAKFLRFELDNFLGYNSNFTIYDTSDSQVVIK 122
Query: 350 EAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
A++ L ++K V G M +++ L F+ Y K R
Sbjct: 123 AALKALNLDDKYYPV--------------GAMISAISDAKNKLMFA------SDYRKQAR 162
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D +K+ D + E Y LR NALD+ DL+ +VKLL + V
Sbjct: 163 DFYQ------------QKVAD-----VYEYYERELRKNNALDFDDLLLVAVKLLQSNAAV 205
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDS 527
+Y +K +++DE+QDT+ QY L +L+SH + I +VGD DQSI+++ GADI
Sbjct: 206 LDKYSKRFKYVMIDEYQDTNHAQYLLAYLLSSHWKNIAVVGDADQSIYAWRGADIQNILD 265
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KD+ N I+L +NYRST+ I++AA+++I HN R + KN+ TD G+KI +
Sbjct: 266 FEKDYPNCTSIKLEQNYRSTKIILDAANAVIDHNEGRPE-KNLWTDKVEGAKIQHFTAQS 324
Query: 588 EDAQCAFIIDKIL-EHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
E + AFI D I+ +H +G YG +AILYR +V + A +R +P+ + G
Sbjct: 325 EHEEAAFIGDTIVKKHDIHG----VPYGDMAILYRTNAQSRVLEEALIKRALPYTMVGGT 380
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSF 705
FY +K ++ ++A LR DD R+ KR I
Sbjct: 381 KFYDRKEIKDVLAYLRVLYNPFDDLSLLRIINV--------PKRSI-------------- 418
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYL 765
GA + G + +TL + ++ ++ +K
Sbjct: 419 --------GATTVSKLQDYARENGTSLFMTLTQLH-----------LVDTIKGKTKEK-- 457
Query: 766 LEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC---- 821
LE+ ++ F L+ E +D +SVL L A + D T + A EE QD+
Sbjct: 458 LEEFGILIF---TLVAEMDD-KSVLDILEA-ILD--RTGYLAQLEESTDPQDQARAENIG 510
Query: 822 --INVLKAFIDYISERETEHFRTQR---------HDNENSVTLTTIHQSKGLEWDIVFVA 870
++V K F D E F Q E+ VTL T+H +KGLE+ IVF+
Sbjct: 511 ELLSVAKDFQDTNPTGTVEDFLEQVALVNDVDSFEQEESKVTLMTLHAAKGLEFPIVFLG 570
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ--- 927
E P H E+ +EEERRL YV +TRA K+L+I +
Sbjct: 571 GLEEGLFP--HSRTLMNPEE---IEEERRLAYVGITRAEKELYISNATTRTVFGRTSSYL 625
Query: 928 PSRFLKEIPHHLRE-VQAEQSVQD 950
PSRF+ EIP L + ++A++ + D
Sbjct: 626 PSRFIDEIPAELVDSLRAKRRIPD 649
>gi|85817194|gb|EAQ38377.1| UvrD/REP helicase [Dokdonia donghaensis MED134]
Length = 778
Score = 241 bits (615), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 206/734 (28%), Positives = 340/734 (46%), Gaps = 132/734 (17%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
Y++ LND Q A L+++AG GSGK G+ NIL++TFT
Sbjct: 8 YIEGLNDAQ-RAPTLHKDGALIVIAGAGSGKTRVLTMRIAYLMSQGVDAFNILSLTFTNK 66
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ RI IVG AK L + TFHS ++ R A+KL S F IY +R I
Sbjct: 67 AAREMKKRIAGIVGNNEAKNLWMGTFHSIFAKILRIEADKLGYPSNFTIYDTQDSQRLIS 126
Query: 350 EAVRLLENEKIL-----VVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYN 404
++ ++ +K + V RIS+ + SL + A ++ +L +
Sbjct: 127 AIIKEMQLDKDIYKYKQVQNRISS-----------FKNSLITVRAY----ANNPELVE-- 169
Query: 405 KFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLST 464
A A K P ++G+ I Y A+D+ DL+ + +LL+
Sbjct: 170 ---------ADAMAKRP----RMGE-----IYAEYVDRCFKAGAMDFDDLLLRTNELLNR 211
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADIS 523
FPEV +YQ+ +K I+VDE+QDT+ QY +++ L+ I +VGDD QSI++F GA+I+
Sbjct: 212 FPEVLNKYQNRFKYILVDEYQDTNHSQYLIVKALSDKFQNICVVGDDSQSIYAFRGANIN 271
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
+F+KD+ N RL +NYRS++ IVEAA+S+I+ N R K V T N G +II+
Sbjct: 272 NILNFQKDYENVAMYRLEQNYRSSKNIVEAANSVIEKNKTRLD-KTVWTANEDGGQIIVH 330
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH 643
+ + ++ I E+ N + G AILYR + + A R+R IP+ I+
Sbjct: 331 RSPTDGEEGRYVASSIFENRMNHQ---LNNGDFAILYRTNAQSRAMEDALRKRDIPYRIY 387
Query: 644 G-VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRK 702
G ++FY++K ++ ++ LR + D+ E KRV+++ +
Sbjct: 388 GGLSFYQRKEIKDVLGYLRVLVNPKDE---------------EALKRVVNYPARGIGGTT 432
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSIS---AVITSVANM 759
++ A +G + E++ K+ + PS++ T + N
Sbjct: 433 LDKLTVAAKHYGRSM------------------FEVMDKIEQLGPSMNINRGTQTKLKNF 474
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-----NV 814
V + F ++LNE++D +V + +A T L EG N+
Sbjct: 475 VTM--------IKSF---QILNEESDAFTVAE-TVARKTGLLQELKKDGTPEGIARIENI 522
Query: 815 DQ----------DKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEW 864
++ ++K + + +++ + +++ V L TIH +KGLE+
Sbjct: 523 EELLNGMRDFVEEQKELADATGSLAEFLEDVALATTLDNDTGDDDRVALMTIHLAKGLEF 582
Query: 865 DIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQ 924
V++ E P +G + +EEERRL YVA+TRA K+ ++ Y W
Sbjct: 583 PFVYIVGMEEDLFP-----SGMSMSTRSELEEERRLFYVALTRAEKQAYLTYTESRYRWG 637
Query: 925 LL---QPSRFLKEI 935
L +PSRF++EI
Sbjct: 638 KLVDAEPSRFIEEI 651
>gi|381164347|ref|ZP_09873577.1| ATP-dependent DNA helicase PcrA [Saccharomonospora azurea NA-128]
gi|379256252|gb|EHY90178.1| ATP-dependent DNA helicase PcrA [Saccharomonospora azurea NA-128]
Length = 836
Score = 241 bits (615), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 221/759 (29%), Positives = 342/759 (45%), Gaps = 125/759 (16%)
Query: 240 EYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAM 284
+++ L LN Q AA PLL+VAG GSGK + P I+A+
Sbjct: 27 DHADLLDDLNPAQ-RAAVEHQGRPLLVVAGAGSGKTRVLTRRIAYLLAARDVHPGQIMAI 85
Query: 285 TFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQ 344
TFT AA+EMR+R+ +VG+ A + +STFHS ++L R A+ LE TS F IY
Sbjct: 86 TFTNKAAAEMRERVADLVGR-RAGPMWVSTFHSMCVRLLRREAKTLEMTSNFSIYDADDS 144
Query: 345 RRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYN 404
RR + R L+ L KR S L T H + L +A + S F
Sbjct: 145 RRLMTLVGRDLD----LDPKRYSARALAT--HVSNWKNELIDPDAAAQAAASDF------ 192
Query: 405 KFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLST 464
D A Y L A+D+ DLI +V+L
Sbjct: 193 ------------------------DRKAAEAYREYQRRLVQAGAMDFDDLIMRTVELFQA 228
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA---------SHNRITIVGDDDQSIF 515
FP+V + Y+ ++ ++VDE+QDT+ QY+L++ L + + + +VGD DQSI+
Sbjct: 229 FPDVAEHYRRRFRHVLVDEYQDTNHAQYTLVRELVGTEPTESGPAPSELCVVGDADQSIY 288
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I + F +DF N + I L +NYRST+ I+ AA+++I N R K + TD
Sbjct: 289 AFRGATIRNIEEFERDFPNARSILLEQNYRSTQTILSAANAVIARNSGRRD-KRLWTDAG 347
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G +I+ NE + AF+ +I A G A Y +A+ YR +VF+ F
Sbjct: 348 DGERIVGYVADNEHDEAAFVAGEIDALADRGEA---KYSDVAVFYRTNNQSRVFEEIFIR 404
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY +K VR +A LR D RR+ K+ + D
Sbjct: 405 LGLPYRVVGGVRFYERKEVRDALAYLRVLSNPEDTVSLRRILNV-------PKRGIGDRA 457
Query: 695 DKISTI----RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSIS 750
+ + + SF +A D ++ RSQ V L ++ + +LV ++
Sbjct: 458 EAVVATHAERERISFAAALRDAVDGRVPLLNPRSQKAITAFVEL-VDGLRELVDEGTDVA 516
Query: 751 AVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST-KFTAAK 809
V+ +V + + LE+ D +L N D L + + T+F T + +A
Sbjct: 517 DVLEAVLDRTGYRAELEESRDPQ-DATRLENLDE-----LVTVAREFTEFAQTVQAESAG 570
Query: 810 EEG--------NVDQD----KKGCINVLKAFIDYIS------------ERETEHFRTQRH 845
++G ++D+D + G L AF++ +S E
Sbjct: 571 QDGDDAGETVDDLDEDVGVPEPGS---LPAFLERVSLVADADSIPSPDGGEDGEDGEDGD 627
Query: 846 DNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAM 905
D++ VTL T+H +KGLE+ +VF + P + A+ E + EERRL YVA+
Sbjct: 628 DDQGVVTLMTVHTAKGLEYPVVFCTGWEDGVFPHLR----ALGEP-KELAEERRLAYVAI 682
Query: 906 TRARKKLFILYVMMDANWQLLQP-----SRFLKEIPHHL 939
TRA+++L++ ++ W QP SRFL EIP L
Sbjct: 683 TRAQRRLYVSRALVRTAWG--QPMSNPASRFLDEIPEEL 719
>gi|210623345|ref|ZP_03293743.1| hypothetical protein CLOHIR_01693 [Clostridium hiranonis DSM 13275]
gi|210153655|gb|EEA84661.1| hypothetical protein CLOHIR_01693 [Clostridium hiranonis DSM 13275]
Length = 755
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 206/717 (28%), Positives = 338/717 (47%), Gaps = 97/717 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
L +LN Q A P+LI+AG GSGK G+ P+NILA+TFT A
Sbjct: 3 LDTLNPSQ-RRAVERTEGPVLILAGAGSGKTRVLTTRIAHLIDKGVQPANILAITFTNKA 61
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIE 350
A+EMR+R+ V ++ K++ ISTFHS +++ R K+ F+IY Q
Sbjct: 62 ANEMRERVEETV-ESDTKDMWISTFHSCCVRILRKDINKIGYNRSFVIYDAADQ------ 114
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
+ ++K ++ +D F + + S + KL +++ D
Sbjct: 115 ---------VTLIKDCLKELNISDKAFE-------PKTVISYISGAKDKLKSPKQYKDDC 158
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
+ S KI D I Y L+ +ALD+ DLI +V+L PEV
Sbjct: 159 AGDPRMS--------KIAD-----IYSLYQDRLKRNSALDFDDLIIKTVELFKKNPEVLD 205
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDSFR 529
Y+ ++ I+VDE+QDTS QY ++ LA H I +VGDDDQSI+ + GADI F
Sbjct: 206 YYRSRFRYIMVDEYQDTSMAQYEFIKQLAMGHKNICVVGDDDQSIYGWRGADIRNILEFE 265
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
KD+ + ++L +NYRST+ I++AA+ +I +N++R + K + ++ + G KI I+ NE
Sbjct: 266 KDYDDVFVVKLEQNYRSTQVILDAANHVISNNIER-KRKKLWSEKTEGEKIKIELAENEL 324
Query: 590 AQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFY 648
+ FI + I++ G Y A+LYR + + A +P+NI+ G FY
Sbjct: 325 EEGRFIAETIIDKVQ-GEGR--KYSDCAVLYRANAQARPIEDALNRAGVPYNIYGGTKFY 381
Query: 649 RKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISA 708
+K ++ +IA LR DD +R+ + + R I+ I+ +++++ S S
Sbjct: 382 ERKEIKDLIAYLRIIANPQDDISLKRIIN---VPRRGIGLRTIEKIEDRASLKQESMYSV 438
Query: 709 ACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQ 768
DI T + Q+ ++ TL I ++ +S +I V + Y LE+
Sbjct: 439 LLDIDSNSEISTKAKKQINGFVDLVGTLRAIKEVY----PVSKLIEKVLDSTGYIYELEE 494
Query: 769 RAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAF 828
K N N Q + ++ +F+S + +DK L+ F
Sbjct: 495 EM------KKNQNSMNGKYEEAQDRIDNLNEFISIALEFENSDDENLEDKS-----LETF 543
Query: 829 IDYISERETEHFRTQRHDNE--NSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGA 886
+ ++ ++ ++E N V+L T+H SKGLE+ +VF+ E P+
Sbjct: 544 LTSVA------LTSEATEDEEPNRVSLMTMHTSKGLEFPVVFITGMEEGLFPISRAIKSM 597
Query: 887 VNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQPSRFLKEIP 936
K + +EEERRL YV +TRAR++L++ LY + Q SRF++E+P
Sbjct: 598 ---KDSDIEEERRLCYVGITRAREELYLTMTEKRTLYGKTNHAIQ----SRFIEELP 647
>gi|375288228|ref|YP_005122769.1| ATP-dependent DNA helicase pcrA [Corynebacterium pseudotuberculosis
3/99-5]
gi|383313822|ref|YP_005374677.1| ATP-dependent DNA helicase pcrA [Corynebacterium pseudotuberculosis
P54B96]
gi|384506333|ref|YP_005683002.1| ATP-dependent DNA helicase pcrA [Corynebacterium pseudotuberculosis
C231]
gi|384508421|ref|YP_005685089.1| ATP-dependent DNA helicase pcrA [Corynebacterium pseudotuberculosis
I19]
gi|384510516|ref|YP_005690094.1| ATP-dependent DNA helicase pcrA [Corynebacterium pseudotuberculosis
PAT10]
gi|387136180|ref|YP_005692160.1| ATP-dependent DNA helicase pcrA [Corynebacterium pseudotuberculosis
42/02-A]
gi|302205782|gb|ADL10124.1| ATP-dependent DNA helicase pcrA [Corynebacterium pseudotuberculosis
C231]
gi|308276017|gb|ADO25916.1| ATP-dependent DNA helicase pcrA [Corynebacterium pseudotuberculosis
I19]
gi|341824455|gb|AEK91976.1| ATP-dependent DNA helicase pcrA [Corynebacterium pseudotuberculosis
PAT10]
gi|348606625|gb|AEP69898.1| ATP-dependent DNA helicase pcrA [Corynebacterium pseudotuberculosis
42/02-A]
gi|371575517|gb|AEX39120.1| ATP-dependent DNA helicase pcrA [Corynebacterium pseudotuberculosis
3/99-5]
gi|380869323|gb|AFF21797.1| ATP-dependent DNA helicase pcrA [Corynebacterium pseudotuberculosis
P54B96]
Length = 846
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 224/757 (29%), Positives = 343/757 (45%), Gaps = 132/757 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+Q LN QQ + A +PLLIVAG GSGK G+ P ILA+TFT
Sbjct: 63 VQGLNPQQ-QQAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLMRIRGVQPGQILAITFTNK 121
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EMR+R+ +VG A + +STFHS +++ R A+ + S F IY +R +
Sbjct: 122 AAAEMRERVAHLVGP-IASRMWVSTFHSTCVRILREQAQLVAGLNSNFTIYDSDDSKRLL 180
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
++ + L +K+ + +L +S+ K N+
Sbjct: 181 A----MISKDMNLDIKKFTPRLLGA--------------------GISNLK----NELIS 212
Query: 409 DGMDVAKA-SGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
VA+A S K P E AA+ Y LR NA+D+ DLI +V++ P+
Sbjct: 213 PATAVAEAESTKNPYE------TTVAAVYVEYQRRLRQANAVDFDDLIGETVRIFKEHPQ 266
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA----SHNRITIVGDDDQSIFSFNGADIS 523
V + Y+ ++ +++DE+QDT+ QY L+ L + + + +VGD DQSI++F GA I
Sbjct: 267 VTEYYRRRFRHVLIDEYQDTNHAQYVLIHELVGTGETASELCVVGDSDQSIYAFRGATIR 326
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
+ F +D+ N + L +NYRST+ I+ AA+S+I N R + K + T G I
Sbjct: 327 NIEEFERDYPNATTVLLEQNYRSTQTILNAANSVISQNENRRK-KKLWTALGSGDPITGY 385
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-I 642
NE + FI +I A G Y +AI+YR S + + F IP+ +
Sbjct: 386 VADNEHDEARFIAQEIDALADKG----IDYSDMAIMYRTNNSSRAVEDVFMRSGIPYKVV 441
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFK-----------AFLLLEKEEKKRVI 691
G FY +K +R +IA LR D RR+ AFL L E +
Sbjct: 442 GGTRFYERKEIRDVIAYLRLLDNPEDTVSLRRIINTPRRGIGDKAVAFLTLHSENQ---- 497
Query: 692 DHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLT-LEMISKL-------- 742
S A D ++S R GR + + M+S L
Sbjct: 498 ----------GVSLQQALIDASEGQVSLLGAR-----GRNAISGFVNMMSGLRDSAAESV 542
Query: 743 --VRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDF 800
+ P I VI + ++ K LE+ D G L+ N+L SV + ++ +
Sbjct: 543 NEITGMPDIGNVIAQILDITGYKAELEKSN--DPQDGARLDNLNELVSVAREFSSEAAN- 599
Query: 801 LSTKFTAAKEEGN-------VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENS-VT 852
+ AK +G+ V + + G L+AF++ +S Q DNE VT
Sbjct: 600 ---QVAYAKMDGSELDDLAAVGEPEPGS---LQAFLERVSLVADAD---QIPDNEQGLVT 650
Query: 853 LTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKL 912
L T+H +KGLE+ +VF+ + + P + G E + EERRL YV +TRARK L
Sbjct: 651 LMTLHTAKGLEFPVVFLMGWEDGQFPHLRAL-GDPKE----LAEERRLAYVGITRARKAL 705
Query: 913 FILYVMMDANW--QLLQP-SRFLKEIPHHLREVQAEQ 946
+I M+ ++W + P SRFL EIP L + + E+
Sbjct: 706 YITRAMLRSSWGNPVTNPASRFLTEIPQELLDWRREE 742
>gi|414074283|ref|YP_006999500.1| ATP-dependent DNA helicase [Lactococcus lactis subsp. cremoris
UC509.9]
gi|413974203|gb|AFW91667.1| ATP-dependent DNA helicase [Lactococcus lactis subsp. cremoris
UC509.9]
Length = 758
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 209/730 (28%), Positives = 344/730 (47%), Gaps = 118/730 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
LQ +N++Q +A PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LQGMNEKQAQA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R ++ +A ++ I+TFHS +++ R A+ + F I G Q+ +
Sbjct: 64 AAKEMRERALALTPRA--QDTLIATFHSMCVRILRRDADHIGYNRNFTIIDPGDQKSLM- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+L+ + K +L T S + L +E
Sbjct: 121 --KRILKEANLDPKKWEPKGLLNT-------------------ISNAKNDLLDETAYE-- 157
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
A+ + + P E + A + + Y LR ++D+ DLI +++L P+V
Sbjct: 158 ----AQITARHPYEM------VVARVYKIYQKELRKAESMDFDDLIMQTLRLFDENPDVL 207
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 208 AYYQGKFQYIHVDEYQDTNHAQYQLVKLLASRFQNICVVGDADQSIYGWRGADMQNILDF 267
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+++I++N+KR + K + T N G KI+ NE
Sbjct: 268 EKDYPKAKVVLLEENYRSTKTILDAANNVIKNNLKR-RPKELWTQNDEGDKIVYFRAGNE 326
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ +K+ E S+G S SY A+LYR + + +F + IP+ + G F
Sbjct: 327 QEEA----NKVSEIISSGVRSGRSYADYAVLYRTNAQSRTIEDSFVKSNIPYTMVAGTKF 382
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIRKC 703
Y +K +R +IA L D+ + R+ E K+ V ++ + + + R
Sbjct: 383 YSRKEIRDVIAYLNVVANPADNMSFERIV-------NEPKRGVGPGALEKLRRFAESRNL 435
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
++ DI + I G + + L M L+R S + V M+ +
Sbjct: 436 YLADSSFDIMLSDIRG--------KAAGEIYNLAMAFDLLRTHSESSTITELVEEMLERT 487
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLS-TKFTAAKEEGNVDQDK---- 818
L+ + + + +N R + ++ +FLS TK K E +D++
Sbjct: 488 GYLKALQL-------MPSIENQAR------IENIEEFLSVTKGFDEKSEVPLDEETGEPI 534
Query: 819 -KGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
+ ++ L F++ +S ET+ + + + VT+ T+H +KGLE+ IVF+ E
Sbjct: 535 IETGLDKLSRFLNEVSLLSETDAY----EEESDQVTMMTLHAAKGLEFPIVFLIGMEENI 590
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPS 929
PL VNE +EEERRL YV +TRA + L+ +M+AN ++L +PS
Sbjct: 591 FPLSR-----VNEDIDELEEERRLAYVGITRAEETLY----LMNANQRVLYGKTSYNRPS 641
Query: 930 RFLKEIPHHL 939
RF+ EI L
Sbjct: 642 RFISEIDDEL 651
>gi|89896637|ref|YP_520124.1| hypothetical protein DSY3891 [Desulfitobacterium hafniense Y51]
gi|89336085|dbj|BAE85680.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 760
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 209/727 (28%), Positives = 338/727 (46%), Gaps = 110/727 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
L+ LN Q +A PLLI+AG GSGK G+ P +ILA+TFT A
Sbjct: 9 LEDLNPVQRQA-VEHREGPLLILAGAGSGKTRVLTYRIAHLIAQGVEPWHILAITFTNKA 67
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSE-FLIYGHGQQRRAII 349
A EMRDR+ S+VG + + L ++TFHS +++ RS L S F+IY G Q I
Sbjct: 68 AQEMRDRVYSLVG-SEGRGLWVATFHSACVRILRSEIGYLPGYSRSFVIYDSGDQLALIK 126
Query: 350 EAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
++ L +EK + I S + KL F R
Sbjct: 127 SCMKELNLDEKKFAPRAIEA-----------------------VISDAKNKLLTPEDFSR 163
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D + + + E Y L + NALD+ D+I +V+L PEV
Sbjct: 164 RAKDYFEQKAER--------------VYELYQKKLLANNALDFDDIIMLTVRLFRENPEV 209
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDS 527
+YQD ++ I+VDE+QDT+ QY+L+ +LA R + +VGDDDQSI+ F GAD+
Sbjct: 210 LSQYQDKFRYILVDEYQDTNHAQYALVNLLAKKYRNLCVVGDDDQSIYMFRGADVQNILD 269
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F +D+ K ++L +NYRST+ I++AA+S++Q+N R + K++ T+N G I+ N
Sbjct: 270 FERDYPEAKTLKLEQNYRSTKSILQAANSVVQNNRSRKE-KSLWTENEDGQPIVYYVADN 328
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVA 646
E + ++ ++I + N + A+LYR +V + F + IP+ I G+
Sbjct: 329 EHDEARYMGERI-QRLLNVEGR--KFNEFAVLYRTNAQSRVIEERFMKEGIPYRIFSGLK 385
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLL-LEKEEKKRVIDHIDKISTIRKCSF 705
FY + ++ I+A LR D + RV L + ++++D+ ++
Sbjct: 386 FYERMEIKDILAYLRILHNPADQVSFSRVLNVPKRGLGESTLEKILDYANE--------- 436
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYL 765
+ A + + ++ +K LL + + +R +++A +SV +V + +
Sbjct: 437 --QEMPVLDAIMEADYIPELQSRAKKPLLAFAHLMQELR---ALAAAESSVTKLVEE--V 489
Query: 766 LEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKF----------TAAKEEGNVD 815
L++ D N +D + L ++ +FLS TA +EG D
Sbjct: 490 LKRTGYWD-------NLVSDKSPEAEARLENLREFLSVTAEYDEKADNYETAVVQEGIED 542
Query: 816 QDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANET 875
+ L F++ +S Q D +V + TIH +KGLE+ +VF+ E
Sbjct: 543 ----ALVPGLAGFLEQVSLVAQIDSLDQADD---AVVMMTIHSAKGLEFPVVFLGGMEEG 595
Query: 876 EIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFL 932
P V + EERRL YVA+TRAR++L++ Y M+ Q +PS F
Sbjct: 596 IFPSSRSMLDPV-----LLAEERRLCYVAITRARERLYLAYAQQRMLYGRTQYNRPSEFF 650
Query: 933 KEIPHHL 939
+EIP H+
Sbjct: 651 QEIPTHV 657
>gi|416998832|ref|ZP_11939501.1| ATP-dependent DNA helicase PcrA [Veillonella parvula
ACS-068-V-Sch12]
gi|333976985|gb|EGL77844.1| ATP-dependent DNA helicase PcrA [Veillonella parvula
ACS-068-V-Sch12]
Length = 729
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 222/744 (29%), Positives = 337/744 (45%), Gaps = 137/744 (18%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
L LN +Q + A PLLI+AG GSGK G++P ILA+TFT A
Sbjct: 5 LTGLNKEQ-QQAVQHTEGPLLILAGAGSGKTKVLTVRIAHLLAQGVNPYEILAITFTNKA 63
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEK-LERTSEFLIYGHGQQRRAII 349
A EM+ R+ +VG A + +STFHSF + R + L S F IY + I
Sbjct: 64 AKEMKSRVEGLVGD-VANRIWLSTFHSFCAKFLRFELDNFLGYNSNFTIYDTSDSQAVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAML-FFSMSSFKLCQYNKFER 408
A++ L + + + AM+ S + KL + F +
Sbjct: 123 AALKALN-----------------------LDDKYYPVGAMIGAISDAKNKLLFASDFRK 159
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D + +K+ D + E Y LR NALD+ DL+ +VKLL + V
Sbjct: 160 QARDFYQ---------QKVAD-----VYEYYERELRKNNALDFDDLLLVAVKLLQSNEAV 205
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDS 527
+Y ++ +++DE+QDT+ QY L ++LASH + I +VGD DQSI+++ GADI
Sbjct: 206 LDKYSKRFRYVMIDEYQDTNHAQYLLAKLLASHWKNIAVVGDADQSIYAWRGADIQNILD 265
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KD+ N I+L +NYRST+ I++AA+++I++N R + KN+ TD + G+KI +
Sbjct: 266 FEKDYPNCTSIKLEQNYRSTKIILDAANAVIENNEGRPK-KNLWTDKTEGAKIQHFTAQS 324
Query: 588 EDAQCAFIIDKIL-EHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
E + AFI D I +H +G YG +AILYR +V + A +R +P+ + G
Sbjct: 325 EHEEAAFIGDTIAKKHDIHG----VPYGDMAILYRTNAQSRVLEEALIKRALPYTMVGGT 380
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSF 705
FY +K ++ ++A LR DD R+ KR I
Sbjct: 381 KFYDRKEIKDVLAYLRVLYNPFDDLSLLRIINV--------PKRSI-------------- 418
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYL 765
GA + G + +TL + ++ ++ +K
Sbjct: 419 --------GATTVAKLQDYARANGTSLFMTLTQLH-----------LVDTIKGKTKEK-- 457
Query: 766 LEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN-- 823
LE+ ++ F L+ E D ++VL +L + D T + A EE QD+ N
Sbjct: 458 LEEFGILIF---TLVAEMED-KTVLD-ILESILD--RTGYLAQLEESTDPQDQARAENIG 510
Query: 824 ----VLKAFIDYISERETEHFRTQR---------HDNENSVTLTTIHQSKGLEWDIVFVA 870
V K F D E F Q E+ VTL T+H +KGLE+ IVF+
Sbjct: 511 ELLSVAKDFQDTNPNGTVEDFLEQVALVNDVDSFEQEESKVTLMTLHAAKGLEFPIVFLG 570
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ--- 927
E P +N + +EEERRL YV +TRA K+L+I +
Sbjct: 571 GLEEGLFPHSRTL---MNPE--EIEEERRLAYVGITRAEKELYISNATTRTVFGRTSSYL 625
Query: 928 PSRFLKEIPHHLRE-VQAEQSVQD 950
PSRF+ EIP L + ++A++ V D
Sbjct: 626 PSRFIDEIPEELVDGLRAKRKVPD 649
>gi|256821408|ref|YP_003145371.1| UvrD/REP helicase [Kangiella koreensis DSM 16069]
gi|256794947|gb|ACV25603.1| UvrD/REP helicase [Kangiella koreensis DSM 16069]
Length = 726
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 213/731 (29%), Positives = 342/731 (46%), Gaps = 108/731 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
+Q LND Q EA + LL++AG GSGK IS +ILA+TFT
Sbjct: 7 IQPLNDAQKEAVTAP-NKALLVLAGAGSGKTRVLVHRIAWLVQVEHISAHSILAVTFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM R+ ++ A+ + I TFHS + +L R+H + F I Q R
Sbjct: 66 AAKEMLGRVEDMLA-MPARGMWIGTFHSIAHRLLRAHYRDVGLPEGFQILDAQDQLR--- 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
V+KR+ ++ D + +A F+
Sbjct: 122 ------------VIKRVMKELNLDDNEWPPKQAQWFI----------------------- 146
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSC---NALDYHDLISCSVKLLSTFP 466
+ K G P + GD + +++ Y +C +D+++L+ + +L + P
Sbjct: 147 --NAKKDDGLRPGDIHHHGDFFVSTMVKVYYAYEEACKRGGLVDFNELLLRAYELWANNP 204
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGF 525
+ + YQD ++ I+VDEFQDT+A+QY+ +++L + +NRITIVGDDDQSI+ + GA I
Sbjct: 205 HLLKHYQDRFQHILVDEFQDTNAIQYAWIRLLCNDNNRITIVGDDDQSIYGWRGARIENI 264
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
F KDF + K RL +NYRST I++AA+++I +N +R K++ TD + G II+
Sbjct: 265 QQFEKDFPDCKVSRLEQNYRSTSTILKAANAVIANNHERMG-KSLWTDGNQGEPIILYSA 323
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-G 644
NE + FI +I + G SY IAILYR ++ + A ++ IP+ I+ G
Sbjct: 324 FNEQEEARFIAARIEDWIQQG----NSYDDIAILYRSNAQSRILEDAMLQKGIPYRIYGG 379
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFK--AFLLLEKEEKKRVIDHIDKISTIRK 702
+ F+ + ++ +A +R DD + RV A L EK +D I + +
Sbjct: 380 LRFFERAEIKDTLAYMRLMANRDDDTSFERVVNQPARGLGEKS-----VDLIRAQAREEQ 434
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S AA + ++ ++ + ++ LE + + VI
Sbjct: 435 TSLWQAANKMVVEQLLPPRAKTAMAGFLHLINELESSTAELDLWEQTDIVIEHSG----- 489
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
LLE + + G+ E+ LQ L+ +F + V D+ +
Sbjct: 490 --LLEMYSKEKGEKGQARKEN------LQELVNATREF---------DPDEVVPDELPDM 532
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ L+AFI + + E TQ + + SV L T+H +KGLE+ +VF+A E P H+
Sbjct: 533 SPLQAFIAHAT---LEAGETQADEYQESVQLMTLHSAKGLEFPLVFIAGVEEKLFP--HQ 587
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHH- 938
+V+E G +EEERRL YV +TRA K+L++ + + Q SRF++EIP
Sbjct: 588 M--SVDEPG-GLEEERRLAYVGITRAMKQLYLTFAEKRRIFGRETYPQQSRFIREIPDEL 644
Query: 939 LREVQAEQSVQ 949
L EV+ VQ
Sbjct: 645 LTEVRLNTQVQ 655
>gi|423721415|ref|ZP_17695597.1| ATP-dependent DNA helicase pcrA [Geobacillus thermoglucosidans
TNO-09.020]
gi|383365786|gb|EID43079.1| ATP-dependent DNA helicase pcrA [Geobacillus thermoglucosidans
TNO-09.020]
Length = 727
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 220/721 (30%), Positives = 343/721 (47%), Gaps = 103/721 (14%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFT 287
K L +LN+QQ +AA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 4 KLLANLNEQQ-QAAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLAEKQVAPWNILAITFT 62
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM++R+ +++G A A+E+ ISTFHS +++ R +++ F I Q
Sbjct: 63 NKAAREMKERVQALLGGA-AEEIWISTFHSMCVRILRRDIDRIGIDRNFSILDTTDQ--- 118
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
+ +L+N IL K I G + S + +L KF
Sbjct: 119 ----LSVLKN--ILKEKNIDPKKFDPRSILGTI-------------SSAKNELLSPEKF- 158
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
AK +G ++I + + E Y L +ALD+ DLI +++L PE
Sbjct: 159 ------AKKAGNYY-------EKIVSDVYEEYQKRLLRNHALDFDDLIMTTIQLFERVPE 205
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFD 526
V + YQ ++ I +DE+QDT+ QY L+++LAS I +VGD DQSI+ + GADI
Sbjct: 206 VLEHYQYKFQYIHIDEYQDTNRAQYMLVKMLASRFQNICVVGDADQSIYRWRGADIQNIL 265
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
SF KD+ N K I L +NYRST+ I++AA+ +I++NV R + K + T+N G KI+ E
Sbjct: 266 SFEKDYPNAKVILLEQNYRSTKRILQAANEVIENNVNR-KPKKLWTENPEGQKIVYYEAM 324
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGV 645
NE + F+ KI E+ +G Y A+LYR +V + + IP+ I G+
Sbjct: 325 NEADEAQFVAGKIKEYVESGKR---RYSDFAVLYRTNAQSRVMEEVLLKSNIPYQIVGGL 381
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSF 705
FY +K ++ I+A LR DD R+ + ++ +D I ++ + S
Sbjct: 382 KFYDRKEIKDILAYLRVIANPNDDISLLRIIN---VPKRGIGASTLDKIVNYASENELSV 438
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYL 765
A ++ +S S L + R++L + + V SV +V +
Sbjct: 439 FEALGELEHIGLSARIAAS-LLEFRRMLEQWGQLQEYV-----------SVTELVEE--- 483
Query: 766 LEQRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINV 824
V+D G + +L +N L + Q L ++ +FLS K NV +DK
Sbjct: 484 -----VLDKSGYREMLKVENTLEA--QSRLENIDEFLSV----TKHFENVSEDKS----- 527
Query: 825 LKAFI-DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
L AF+ D + + ++ ++V L T+H +KGLE+ +VF+ E P
Sbjct: 528 LIAFLTDLALISDIDQLNDADGEDGDAVVLMTLHSAKGLEFPVVFLIGMEEGIFPHSRSL 587
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSRFLKEIPHHLR 940
+EEERRL YV +TRA ++LF+ M + + SRF+ EIP L
Sbjct: 588 EDE-----DEMEEERRLAYVGITRAEEELFLTSAQMRTLFGYTNMNAVSRFIHEIPEELV 642
Query: 941 E 941
E
Sbjct: 643 E 643
>gi|303228942|ref|ZP_07315752.1| ATP-dependent DNA helicase PcrA [Veillonella atypica
ACS-134-V-Col7a]
gi|302516356|gb|EFL58288.1| ATP-dependent DNA helicase PcrA [Veillonella atypica
ACS-134-V-Col7a]
Length = 729
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 225/744 (30%), Positives = 338/744 (45%), Gaps = 137/744 (18%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
L LN +Q + A PLLI+AG GSGK G++P ILA+TFT A
Sbjct: 5 LDGLNREQ-QQAVQHTEGPLLILAGAGSGKTKVLTVRIAYLLAQGVNPYEILAITFTNKA 63
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEK-LERTSEFLIYGHGQQRRAII 349
A EM+ R+ +VG A + +STFHSF + R + L S F IY + I
Sbjct: 64 AKEMKSRVEGLVGD-VANRIWLSTFHSFCAKFLRFELDNFLGYNSNFTIYDTSDSQVVIK 122
Query: 350 EAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
A++ L ++K + + + + +D M AS F A F+
Sbjct: 123 AALKALNLDDKYYPIGAMISAI--SDAKNKLMFASDFRKQARDFYQ-------------- 166
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
+K+ D + E Y LR NALD+ DL+ +VKLL + V
Sbjct: 167 ----------------QKVAD-----VYEYYERELRKNNALDFDDLLLVAVKLLQSNAAV 205
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDS 527
+Y +K +++DE+QDT+ QY L +L+SH + I +VGD DQSI+++ GADI
Sbjct: 206 LDKYSKRFKYVMIDEYQDTNHAQYLLAYLLSSHWKNIAVVGDADQSIYAWRGADIQNILD 265
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KD+ N I+L +NYRST+ I++AA+++I HN R + KN+ TD G+KI +
Sbjct: 266 FEKDYPNCTSIKLEQNYRSTKIILDAANAVIDHNEGRPE-KNLWTDKVEGAKIQHFTAQS 324
Query: 588 EDAQCAFIIDKIL-EHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
E + AFI D I+ +H +G YG +AILYR +V + A +R +P+ + G
Sbjct: 325 EHEEAAFIGDTIVKKHDIHG----VPYGDMAILYRTNAQSRVLEEALIKRALPYTMVGGT 380
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSF 705
FY +K ++ ++A LR DD R+ KR I
Sbjct: 381 KFYDRKEIKDVLAYLRVLYNPFDDLSLLRIINV--------PKRSI-------------- 418
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYL 765
GA + G + +TL + ++ ++ +K
Sbjct: 419 --------GATTVSKLQDYARENGTSLFMTLTQLH-----------LVDTIKGKTKEK-- 457
Query: 766 LEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC---- 821
LE+ ++ F L+ E +D +SVL L A + D T + A EE QD+
Sbjct: 458 LEEFGILIF---TLVAEMDD-KSVLDILEA-ILD--RTGYLAQLEESTDPQDQARAENIG 510
Query: 822 --INVLKAFIDYISERETEHFRTQR---------HDNENSVTLTTIHQSKGLEWDIVFVA 870
++V K F D E F Q E+ VTL T+H +KGLE+ IVF+
Sbjct: 511 ELLSVAKDFQDTNPTGTVEDFLEQVALVNDVDSFEQEESKVTLMTLHAAKGLEFPIVFLG 570
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ--- 927
E P H E+ +EEERRL YV +TRA K+L+I +
Sbjct: 571 GLEEGLFP--HSRTLMNPEE---IEEERRLAYVGITRAEKELYISNATTRTVFGRTSSYL 625
Query: 928 PSRFLKEIPHHLRE-VQAEQSVQD 950
PSRF+ EIP L + ++A++ + D
Sbjct: 626 PSRFIDEIPAELVDGLRAKRRIPD 649
>gi|387140254|ref|YP_005696232.1| ATP-dependent DNA helicase pcrA [Corynebacterium pseudotuberculosis
1/06-A]
gi|355392045|gb|AER68710.1| ATP-dependent DNA helicase pcrA [Corynebacterium pseudotuberculosis
1/06-A]
Length = 785
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 222/757 (29%), Positives = 341/757 (45%), Gaps = 132/757 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+Q LN QQ + A +PLLIVAG GSGK G+ P ILA+TFT
Sbjct: 2 VQGLNPQQ-QQAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLMRIRGVQPGQILAITFTNK 60
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EMR+R+ +VG A + +STFHS +++ R A+ + S F IY +R +
Sbjct: 61 AAAEMRERVAHLVGP-IASRMWVSTFHSTCVRILREQAQLVAGLNSNFTIYDSDDSKRLL 119
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
++ + L +K+ + +L +S+ K N+
Sbjct: 120 A----MISKDMNLDIKKFTPRLLGA--------------------GISNLK----NELIS 151
Query: 409 DGMDVAKA-SGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
VA+A S K P E AA+ Y LR NA+D+ DLI +V++ P+
Sbjct: 152 PATAVAEAESTKNPYETTV------AAVYVEYQRRLRQANAVDFDDLIGETVRIFKEHPQ 205
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA----SHNRITIVGDDDQSIFSFNGADIS 523
V + Y+ ++ +++DE+QDT+ QY L+ L + + + +VGD DQSI++F GA I
Sbjct: 206 VTEYYRRRFRHVLIDEYQDTNHAQYVLIHELVGTGETASELCVVGDSDQSIYAFRGATIR 265
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
+ F +D+ N + L +NYRST+ I+ AA+S+I N R + K + T G I
Sbjct: 266 NIEEFERDYPNATTVLLEQNYRSTQTILNAANSVISQNENRRK-KKLWTALGSGDPITGY 324
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-I 642
NE + FI +I A G Y +AI+YR S + + F IP+ +
Sbjct: 325 VADNEHDEARFIAQEIDALADKG----IGYSDMAIMYRTNNSSRAVEDVFMRSGIPYKVV 380
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFK-----------AFLLLEKEEKKRVI 691
G FY +K +R +IA LR D RR+ AFL L E +
Sbjct: 381 GGTRFYERKEIRDVIAYLRLLDNPEDTVSLRRIINTPRRGIGDKAVAFLTLHSENQ---- 436
Query: 692 DHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLT-LEMISKL-------- 742
S A D ++S R GR + + M+S L
Sbjct: 437 ----------GVSLQQALIDASEGQVSLLGAR-----GRNAISGFVNMMSGLRDSAAESV 481
Query: 743 --VRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDF 800
+ P I VI + ++ K LE+ D G L+ N+L SV + ++ +
Sbjct: 482 NEITGMPDIGNVIAQILDITGYKAELEKSN--DPQDGARLDNLNELVSVAREFSSEAAN- 538
Query: 801 LSTKFTAAKEEGN-------VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENS-VT 852
+ AK +G+ V + + G L+AF++ +S Q DNE VT
Sbjct: 539 ---QVAYAKMDGSELDDLAAVGEPEPGS---LQAFLERVSLVADAD---QIPDNEQGLVT 589
Query: 853 LTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKL 912
L T+H +KGLE+ +VF+ + + P + + EERRL YV +TRARK L
Sbjct: 590 LMTLHTAKGLEFPVVFLMGWEDGQFPHLRALGDP-----KELAEERRLAYVGITRARKAL 644
Query: 913 FILYVMMDANW--QLLQP-SRFLKEIPHHLREVQAEQ 946
+I M+ ++W + P SRFL EIP L + + E+
Sbjct: 645 YITRAMLRSSWGNPVTNPASRFLTEIPQELLDWRREE 681
>gi|385838195|ref|YP_005875825.1| ATP-dependent DNA helicase UvrD/PcrA [Lactococcus lactis subsp.
cremoris A76]
gi|358749423|gb|AEU40402.1| ATP-dependent DNA helicase UvrD/PcrA [Lactococcus lactis subsp.
cremoris A76]
Length = 758
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 209/730 (28%), Positives = 344/730 (47%), Gaps = 118/730 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
LQ +N++Q +A PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LQGMNEKQAQA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R ++ +A ++ I+TFHS +++ R A+ + F I G Q+ +
Sbjct: 64 AAKEMRERALALTPRA--QDTLIATFHSMCVRILRRDADHIGYNRNFTIIDPGDQKSLM- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+L+ + K +L T S + L +E
Sbjct: 121 --KRILKEANLDPKKWEPKGLLNT-------------------ISNAKNDLLDETDYE-- 157
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
A+ + + P E + A + + Y LR ++D+ DLI +++L P+V
Sbjct: 158 ----AQITARHPYEM------VVARVYKIYQKELRKAESMDFDDLIMQTLRLFDENPDVL 207
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 208 AYYQGKFQYIHVDEYQDTNHAQYQLVKLLASRFQNICVVGDADQSIYGWRGADMQNILDF 267
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+++I++N+KR + K + T N G KI+ NE
Sbjct: 268 EKDYPKAKVVLLEENYRSTKTILDAANNVIKNNLKR-RPKELWTQNDEGDKIVYFRAGNE 326
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ +K+ E S+G S SY A+LYR + + +F + IP+ + G F
Sbjct: 327 QEEA----NKVSEIISSGVRSGRSYADYAVLYRTNAQSRTIEDSFVKSNIPYTMVAGTKF 382
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIRKC 703
Y +K +R +IA L D+ + R+ E K+ V ++ + + + R
Sbjct: 383 YSRKEIRDVIAYLNVVANPADNMSFERIV-------NEPKRGVGPGALEKLRRFAESRNL 435
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
++ DI + I G + + L M L+R S + V M+ +
Sbjct: 436 YLADSSFDIMLSDIRG--------KAAGEIYNLAMAFDLLRTHSESSTITELVEEMLERT 487
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLS-TKFTAAKEEGNVDQDK---- 818
L+ + + + +N R + ++ +FLS TK K E +D++
Sbjct: 488 GYLKALQL-------MPSIENQAR------IENIEEFLSVTKGFDEKSEVPLDEETGEPI 534
Query: 819 -KGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
+ ++ L F++ +S ET+ + + + VT+ T+H +KGLE+ IVF+ E
Sbjct: 535 IETGLDKLSRFLNEVSLLSETDAY----EEESDQVTMMTLHAAKGLEFPIVFLIGMEENI 590
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPS 929
PL VNE +EEERRL YV +TRA + L+ +M+AN ++L +PS
Sbjct: 591 FPLSR-----VNEDIDELEEERRLAYVGITRAEETLY----LMNANQRVLYGKTSYNRPS 641
Query: 930 RFLKEIPHHL 939
RF+ EI L
Sbjct: 642 RFISEIDDEL 651
>gi|333373452|ref|ZP_08465363.1| ATP-dependent helicase PcrA [Desmospora sp. 8437]
gi|332970056|gb|EGK09054.1| ATP-dependent helicase PcrA [Desmospora sp. 8437]
Length = 728
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 213/725 (29%), Positives = 345/725 (47%), Gaps = 116/725 (16%)
Query: 245 LQSLN-DQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTT 288
LQ LN DQ+L A PLLIVAG GSGK I P NILA+TFT
Sbjct: 12 LQGLNPDQRL--AVETTEGPLLIVAGAGSGKTRVLTNRVAYLLSEKRIHPWNILAITFTN 69
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA EM+DRI ++ G A A+E+ ISTFHS +++ R ++L F I Q I
Sbjct: 70 KAAREMKDRIHALAG-AEAEEIWISTFHSMCVRILRRDIDRLGYNRNFTILDSSDQLTVI 128
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE- 407
++IL K + + G L +S+ K N+ +
Sbjct: 129 ---------KQILKEKNLDPKQVPPRG---------------LLNRISNAK----NQLQS 160
Query: 408 -RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
RD + A++ DE+ A I E+Y LR+ +LD+ DL++ +V+L
Sbjct: 161 ARDMKERAQSHM----------DELAAEIFESYQDKLRTNQSLDFDDLLTETVRLFRQVQ 210
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGF 525
EV Y+ ++ I VDE+QDT+ +QY L+++LA H+R + +VGD DQSI+ F GADI+
Sbjct: 211 EVLDYYRRKFQYIHVDEYQDTNHVQYVLVRLLAEHHRNLCVVGDSDQSIYRFRGADITNI 270
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
F +D+ + I+L +NYRST+ I++AA+ +I N +R + K++ T N+ G + + E
Sbjct: 271 LHFERDYPEAQVIKLEQNYRSTQTILKAANGVIARNTER-KPKDLWTKNASGEPVQLYEA 329
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHG 644
NE + F+ D +++ +G Y S A+LYR +V + F + IP+ + G
Sbjct: 330 ENEHEEAYFVADTVVKERKDGK----DYKSFAVLYRTNAQSRVLEEVFMKSNIPYRMVGG 385
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCS 704
+ FY +K ++ ++A LR + DD RRV + ++ + +D I + + S
Sbjct: 386 LKFYERKEIKDLLAYLRLIVNPDDDLSLRRVIN---VPKRGIGQATVDKIAAFADQQGIS 442
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKY 764
+ A ++ +S F R LE + L++ ++A++ ++ +
Sbjct: 443 MMRALLEVEAIGLSNRFLRP-----------LEKFTGLIK---ELNAMLEYLSAGELTEE 488
Query: 765 LLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINV 824
+LE+ + L ++ + + + L ++ +FLS T EE N D+ +
Sbjct: 489 VLEKTGYRE-----ELKKEETVEAASR--LENIDEFLSV--TREFEEKNEDKSLVAFLTD 539
Query: 825 LKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
L D + E +TE E++VTL T+H +KGLE+ VF+ E P
Sbjct: 540 LALISDVDTLEDDTEA-------PEDAVTLMTLHSAKGLEFPQVFLVGMEEGIFPHSRTL 592
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQPSRFLKEIP 936
+ + YV +TRA +KL++ L+ AN PS FL+EIP
Sbjct: 593 DDPEELEEERRLA-----YVGITRAEEKLYLTRAKMRMLFGQTSAN----PPSIFLREIP 643
Query: 937 HHLRE 941
L E
Sbjct: 644 QELVE 648
>gi|294791935|ref|ZP_06757083.1| ATP-dependent DNA helicase PcrA [Veillonella sp. 6_1_27]
gi|294457165|gb|EFG25527.1| ATP-dependent DNA helicase PcrA [Veillonella sp. 6_1_27]
Length = 729
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 222/744 (29%), Positives = 337/744 (45%), Gaps = 137/744 (18%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
L LN +Q + A PLLI+AG GSGK G++P ILA+TFT A
Sbjct: 5 LTGLNKEQ-QQAVQHTEGPLLILAGAGSGKTKVLTVRIAHLLGQGVNPYEILAITFTNKA 63
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEK-LERTSEFLIYGHGQQRRAII 349
A EM+ R+ +VG A + +STFHSF + R + L S F IY + I
Sbjct: 64 AKEMKSRVEGLVGD-VANRIWLSTFHSFCAKFLRFELDNFLGYNSNFTIYDTSDSQAVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAML-FFSMSSFKLCQYNKFER 408
A++ L + + + AM+ S + KL + F +
Sbjct: 123 AALKALN-----------------------LDDKYYPVGAMIGAISDAKNKLLFASDFRK 159
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D + +K+ D + E Y LR NALD+ DL+ +VKLL + V
Sbjct: 160 QARDFYQ---------QKVAD-----VYEYYERELRKNNALDFDDLLLVAVKLLQSNEAV 205
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDS 527
+Y ++ +++DE+QDT+ QY L ++LASH + I +VGD DQSI+++ GADI
Sbjct: 206 LDKYSKRFRYVMIDEYQDTNHAQYLLAKLLASHWKNIAVVGDADQSIYAWRGADIQNILD 265
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KD+ N I+L +NYRST+ I++AA+++I++N R + KN+ TD + G+KI +
Sbjct: 266 FEKDYPNCTSIKLEQNYRSTKIILDAANAVIENNEGRPK-KNLWTDKTEGAKIQHFTAQS 324
Query: 588 EDAQCAFIIDKIL-EHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
E + AFI D I +H +G YG +AILYR +V + A +R +P+ + G
Sbjct: 325 EHEEAAFIGDTIAKKHDIHG----VPYGDMAILYRTNAQSRVLEEALIKRALPYTMVGGT 380
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSF 705
FY +K ++ ++A LR DD R+ KR I
Sbjct: 381 KFYDRKEIKDVLAYLRVLYNPFDDLSLLRIINV--------PKRSI-------------- 418
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYL 765
GA + G + +TL + ++ ++ +K
Sbjct: 419 --------GATTVAKLQDYARANGTSLFMTLTQLH-----------LVDTIKGKTKEK-- 457
Query: 766 LEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN-- 823
LE+ ++ F L+ E D ++VL +L + D T + A EE QD+ N
Sbjct: 458 LEEFGILIF---TLVAEMED-KTVLD-ILESILD--RTGYLAQLEESTDPQDQARAENIG 510
Query: 824 ----VLKAFIDYISERETEHFRTQR---------HDNENSVTLTTIHQSKGLEWDIVFVA 870
V K F D E F Q E+ VTL T+H +KGLE+ IVF+
Sbjct: 511 ELLSVAKDFQDTNPNGTVEDFLEQVALVNDVDSFEQEESKVTLMTLHAAKGLEFPIVFLG 570
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ--- 927
E P +N + +EEERRL YV +TRA K+L+I +
Sbjct: 571 GLEEGLFPHSRTL---MNPE--EIEEERRLAYVGITRAEKELYISNATTRTVFGRTSSYL 625
Query: 928 PSRFLKEIPHHLRE-VQAEQSVQD 950
PSRF+ EIP L + ++A++ V D
Sbjct: 626 PSRFIDEIPEELVDGLRAKRKVPD 649
>gi|383806971|ref|ZP_09962532.1| superfamily I DNA and RNA helicase [Candidatus Aquiluna sp.
IMCC13023]
gi|383299401|gb|EIC92015.1| superfamily I DNA and RNA helicase [Candidatus Aquiluna sp.
IMCC13023]
Length = 759
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 218/778 (28%), Positives = 349/778 (44%), Gaps = 170/778 (21%)
Query: 235 QNMPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPS 279
Q PD+ L LN QQ + A LLIVAG GSGK I PS
Sbjct: 8 QPNPDDL---LTGLNPQQ-QQAVRYRGRALLIVAGAGSGKTRVLTHRMAHMLANKEIWPS 63
Query: 280 NILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIY 339
ILA+TFT AA+EMR+R+ S++G+A + + + TFHS LQ+ R A++L S F +Y
Sbjct: 64 QILAITFTNKAAAEMRERVESLIGQA-GQGMWLKTFHSACLQILRREAQRLGHDSNFSVY 122
Query: 340 GHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFK 399
G R ++KR+ + D +A+ + NA
Sbjct: 123 DTGDTR---------------ALLKRLLREAGAEDADIKPSQAAAIISNAK--------- 158
Query: 400 LCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSV 459
N+ +D D A+ + ++ R + A + + Y LR NA D+ DLI +V
Sbjct: 159 ----NEL-KDAEDFARNADRSNPRERLV-----AEVFQAYTSELRRNNAFDFDDLIVETV 208
Query: 460 KLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLL-------------------QILAS 500
LL FPE+ YQ ++ ++VDE+QDT+ QY+L+ ++L
Sbjct: 209 GLLQAFPELRARYQKRFRHVLVDEYQDTNHAQYALIREFTRPLPEEHAIFDEQTGEVLGP 268
Query: 501 HNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQH 560
+ +T+VGD DQSI++F GA I F +DF + I L +NYRST+ I+ AA+++I
Sbjct: 269 AD-LTVVGDSDQSIYAFRGASIRNITEFERDFPGAETILLEQNYRSTQNILSAANAVISQ 327
Query: 561 NVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILY 620
N R KN+ TD+ G KI + ++E + AF++D++ + G +Y IA+LY
Sbjct: 328 NPYRPA-KNLWTDSGAGDKITMFTAYDERNEAAFVVDRVKKLHDEG----VNYRDIAVLY 382
Query: 621 RRQVSGKVFQTAFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAF 679
R + + ++IP+ I G+ F+ ++ ++ +A L G +D RRV
Sbjct: 383 RTNSLTPSLEAELKSQQIPYAVIGGLKFFERREIKDALAYLSAISNGRNDEAVRRVINIP 442
Query: 680 L--LLEKEEKKRVIDHIDKISTIRKCSFISA---ACDI-FGAKISGT----------FKR 723
+ +K E K I + + + SF A A D+ G K+ + +
Sbjct: 443 TRGIGQKTELK-----IAQFARTNEMSFRQALLFASDLQLGPKLQASVTAFGELLNELEA 497
Query: 724 SQLTQGRKVLLTLEMISKLVR------REPSISAVITSVANMVPQKYLLEQRAVVDFDGG 777
+T G +L L + R R+P A + ++ ++ Q L E +A
Sbjct: 498 MTVTDGPAEVLKLALTRSGYRSELELSRDPQDEARVENLDALLGQ--LFEWQA------- 548
Query: 778 KLLNEDNDLRSVLQYLLADVTDFLS-TKFTAAKEEGNVDQDKKGCINVLKAFIDYISERE 836
Q+ V D+L+ +AA +E +D+ G I+
Sbjct: 549 -------------QFPEGTVADYLAEVTLSAAADE---IEDESGSIS------------- 579
Query: 837 TEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEE 896
L T+H +KGLE+ +VF+ + +P + F +E G ++E
Sbjct: 580 ----------------LMTLHTAKGLEYQVVFMIGLEQGTLPHIRSF----DEPG-GLQE 618
Query: 897 ERRLLYVAMTRARKKLFILYVMMD---ANWQLLQPSRFLKEIPHHLREVQAEQSVQDQ 951
ERRL+YV MTRAR++LFI + + N S FL +IP L E + + D+
Sbjct: 619 ERRLMYVGMTRAREQLFISHALQRTIFGNTSGFTTSMFLADIPQELVEAEGSERSTDR 676
>gi|116511959|ref|YP_809175.1| ATP-dependent DNA helicase PcrA [Lactococcus lactis subsp. cremoris
SK11]
gi|116107613|gb|ABJ72753.1| ATP-dependent DNA helicase PcrA [Lactococcus lactis subsp. cremoris
SK11]
Length = 758
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 209/730 (28%), Positives = 343/730 (46%), Gaps = 118/730 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
LQ +N++Q +A PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LQGMNEKQAQA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R ++ +A ++ I+TFHS +++ R A+ + F I G Q+ +
Sbjct: 64 AAKEMRERALALTPRA--QDTLIATFHSMCVRILRRDADHIGYNRNFTIIDPGDQKSLM- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+L+ + K +L T S + L +E
Sbjct: 121 --KRILKEANLDPKKWEPKGLLNT-------------------ISNAKNDLLDETAYE-- 157
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
A+ + + P E + A + + Y LR ++D+ DLI +++L P+V
Sbjct: 158 ----AQITARHPYEM------VVARVYKIYQKELRKAESMDFDDLIMQTLRLFDENPDVL 207
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 208 AYYQGKFQYIHVDEYQDTNHAQYQLVKLLASRFQNICVVGDADQSIYGWRGADMQNILDF 267
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+++I++N+KR + K + T N G KI+ NE
Sbjct: 268 EKDYPKAKVVLLEENYRSTKTILDAANNVIKNNLKR-RPKELWTQNDEGDKIVYFRAGNE 326
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ +K+ E S+G S SY A+LYR + + +F + IP+ + G F
Sbjct: 327 QEEA----NKVSEIISSGVRSGRSYADYAVLYRTNAQSRTIEDSFVKSNIPYTMVAGTKF 382
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIRKC 703
Y +K +R +IA L D+ + R+ E K+ V ++ + + + R
Sbjct: 383 YSRKEIRDVIAYLNVVANPADNMSFERIV-------NEPKRGVGPGALEKLRRFAESRNL 435
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
++ DI + I G + L M L+R S + V M+ +
Sbjct: 436 YLADSSFDIMLSDIRGKVAGE--------IYNLAMAFDLLRTHSESSTITELVEEMLERT 487
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLS-TKFTAAKEEGNVDQDK---- 818
L+ + + + +N R + ++ +FLS TK K E +D++
Sbjct: 488 GYLKALQL-------MPSIENQAR------IENIEEFLSVTKGFDEKSEVPLDEETGEPI 534
Query: 819 -KGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
+ ++ L F++ +S ET+ + + + VT+ T+H +KGLE+ IVF+ E
Sbjct: 535 IETGLDKLSRFLNEVSLLSETDAY----EEESDQVTMMTLHAAKGLEFPIVFLIGMEENI 590
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPS 929
PL VNE +EEERRL YV +TRA + L+ +M+AN ++L +PS
Sbjct: 591 FPLSR-----VNEDIDELEEERRLAYVGITRAEETLY----LMNANQRVLYGKTSYNRPS 641
Query: 930 RFLKEIPHHL 939
RF+ EI L
Sbjct: 642 RFISEIDDEL 651
>gi|336391888|ref|ZP_08573287.1| ATP-dependent DNA helicase PcrA [Lactobacillus coryniformis subsp.
torquens KCTC 3535]
Length = 757
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 211/736 (28%), Positives = 344/736 (46%), Gaps = 103/736 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P ILA+TFT
Sbjct: 7 LTGMNDKQQEA-VKQTEGPLLIMAGAGSGKTRVVTHRIAYLIEELDVAPWRILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSE-FLIYGHGQQRRAI 348
AA EMR+R+ S++ + A+ + +STFH+ +++ R +K+ S F I G+Q +
Sbjct: 66 AAREMRERVASLLNE-RAESVWVSTFHALCVRILRRDIDKMSGYSRSFTIADPGEQNTLM 124
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
+IL + I T G +S+ K N+ +
Sbjct: 125 ---------RRILTQQNIDPKKYTPRSILG---------------EISNAK----NQLQT 156
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
A AS TP E EI A E Y L + ALD+ DLI +++L PE
Sbjct: 157 PKDYAAAAS--TPFE------EIVAKCYEPYQNELEANQALDFDDLIMLTIELFRKSPET 208
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDS 527
YQ+ ++ I VDE+QDT+ QY+L+ +LA ++ + +VGD DQSI+ + GAD+S +
Sbjct: 209 LDYYQEKFRYIHVDEYQDTNQAQYTLVNMLAQRYHNLCVVGDADQSIYGWRGADMSNIMN 268
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KD+ K + L +NYRST+ I++AA+ +I +NV R + K + T+N G+KI N
Sbjct: 269 FEKDYPEAKTVMLEQNYRSTQTILQAANDVINNNVYR-KPKKLWTENDAGAKISYYRGQN 327
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
E + F++ KI E ++ YG A+LYR + + + IP+ + G
Sbjct: 328 EHDEARFVVAKIQEEMADND---FRYGDFAVLYRTNAQSRTIEENLVKANIPYKMVGGHK 384
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFI 706
FY +K ++ ++A LR + D + R+ + ++ ID + + S +
Sbjct: 385 FYDRKEIKDVLAYLRVIVNPDDSIDFERIVNS---PKRGIGNGTIDKLRDFANYNNWSLL 441
Query: 707 SAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLL 766
AA ++ A +G R++ T G + K R E ++ + T +L
Sbjct: 442 EAARNVDLA--NGIATRARHTLGSFATTMTALRDK--RTEWDVTELTTQ---------ML 488
Query: 767 EQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST--KF-TAAKEEGNVDQDKKGCIN 823
EQ +D L ++ L + Q + ++ +FLS +F +E + D D+
Sbjct: 489 EQTGYLD-----ALKQEKTLEA--QTRIENIQEFLSVTKEFDDGYDDEADADSDR----- 536
Query: 824 VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
F+D++++ + + + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 537 ----FVDFLTDLALVSDQDDIEEESSEVTLMTLHAAKGLEFPVVFMMGMEEGIFPLSRAM 592
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHHLR 940
+ +EEERRL YV +TRA+KKL++ M+ Q SRF+ EI L
Sbjct: 593 -----MENDELEEERRLAYVGITRAKKKLYLTNAYSRMLYGRTQSNPASRFVGEIDEDLI 647
Query: 941 EVQAEQSVQDQHENIP 956
+ + + NIP
Sbjct: 648 LFENKTAASLSERNIP 663
>gi|384504243|ref|YP_005680913.1| ATP-dependent DNA helicase pcrA [Corynebacterium pseudotuberculosis
1002]
gi|385807102|ref|YP_005843499.1| ATP-dependent DNA helicase pcrA [Corynebacterium pseudotuberculosis
267]
gi|302330341|gb|ADL20535.1| ATP-dependent DNA helicase pcrA [Corynebacterium pseudotuberculosis
1002]
gi|383804495|gb|AFH51574.1| ATP-dependent DNA helicase pcrA [Corynebacterium pseudotuberculosis
267]
Length = 785
Score = 241 bits (614), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 222/757 (29%), Positives = 341/757 (45%), Gaps = 132/757 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+Q LN QQ + A +PLLIVAG GSGK G+ P ILA+TFT
Sbjct: 2 VQGLNPQQ-QQAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLMRIRGVQPGQILAITFTNK 60
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EMR+R+ +VG A + +STFHS +++ R A+ + S F IY +R +
Sbjct: 61 AAAEMRERVAHLVGP-IASRMWVSTFHSTCVRILREQAQLVAGLNSNFTIYDSDDSKRLL 119
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
++ + L +K+ + +L +S+ K N+
Sbjct: 120 A----MISKDMNLDIKKFTPRLLGA--------------------GISNLK----NELIS 151
Query: 409 DGMDVAKA-SGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
VA+A S K P E AA+ Y LR NA+D+ DLI +V++ P+
Sbjct: 152 PATAVAEAESTKNPYETTV------AAVYVEYQRRLRQANAVDFDDLIGETVRIFKEHPQ 205
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA----SHNRITIVGDDDQSIFSFNGADIS 523
V + Y+ ++ +++DE+QDT+ QY L+ L + + + +VGD DQSI++F GA I
Sbjct: 206 VTEYYRRRFRHVLIDEYQDTNHAQYVLIHELVGTGETASELCVVGDSDQSIYAFRGATIR 265
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
+ F +D+ N + L +NYRST+ I+ AA+S+I N R + K + T G I
Sbjct: 266 NIEEFERDYPNATTVLLEQNYRSTQTILNAANSVISQNENRRK-KKLWTALGSGDPITGY 324
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-I 642
NE + FI +I A G Y +AI+YR S + + F IP+ +
Sbjct: 325 VADNEHDEARFIAQEIDALADKG----IDYSDMAIMYRTNNSSRAVEDVFMRSGIPYKVV 380
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFK-----------AFLLLEKEEKKRVI 691
G FY +K +R +IA LR D RR+ AFL L E +
Sbjct: 381 GGTRFYERKEIRDVIAYLRLLDNPEDTVSLRRIINTPRRGIGDKAVAFLTLHSENQ---- 436
Query: 692 DHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLT-LEMISKL-------- 742
S A D ++S R GR + + M+S L
Sbjct: 437 ----------GVSLQQALIDASEGQVSLLGAR-----GRNAISGFVNMMSGLRDSAAESV 481
Query: 743 --VRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDF 800
+ P I VI + ++ K LE+ D G L+ N+L SV + ++ +
Sbjct: 482 NEITGMPDIGNVIAQILDITGYKAELEKSN--DPQDGARLDNLNELVSVAREFSSEAAN- 538
Query: 801 LSTKFTAAKEEGN-------VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENS-VT 852
+ AK +G+ V + + G L+AF++ +S Q DNE VT
Sbjct: 539 ---QVAYAKMDGSELDDLAAVGEPEPGS---LQAFLERVSLVADAD---QIPDNEQGLVT 589
Query: 853 LTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKL 912
L T+H +KGLE+ +VF+ + + P + + EERRL YV +TRARK L
Sbjct: 590 LMTLHTAKGLEFPVVFLMGWEDGQFPHLRALGDP-----KELAEERRLAYVGITRARKAL 644
Query: 913 FILYVMMDANW--QLLQP-SRFLKEIPHHLREVQAEQ 946
+I M+ ++W + P SRFL EIP L + + E+
Sbjct: 645 YITRAMLRSSWGNPVTNPASRFLTEIPQELLDWRREE 681
>gi|294793798|ref|ZP_06758935.1| ATP-dependent DNA helicase PcrA [Veillonella sp. 3_1_44]
gi|294455368|gb|EFG23740.1| ATP-dependent DNA helicase PcrA [Veillonella sp. 3_1_44]
Length = 729
Score = 240 bits (613), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 222/744 (29%), Positives = 337/744 (45%), Gaps = 137/744 (18%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
L LN +Q + A PLLI+AG GSGK G++P ILA+TFT A
Sbjct: 5 LTGLNKEQ-QQAVQHTEGPLLILAGAGSGKTKVLTVRIAHLLAQGVNPYEILAITFTNKA 63
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEK-LERTSEFLIYGHGQQRRAII 349
A EM+ R+ +VG A + +STFHSF + R + L S F IY + I
Sbjct: 64 AKEMKSRVEGLVGD-VATRIWLSTFHSFCAKFLRFELDNFLGYNSNFTIYDTSDSQAVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAML-FFSMSSFKLCQYNKFER 408
A++ L + + + AM+ S + KL + F +
Sbjct: 123 AALKALN-----------------------LDDKYYPVGAMIGAISDAKNKLLFASDFRK 159
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D + +K+ D + E Y LR NALD+ DL+ +VKLL + V
Sbjct: 160 QARDFYQ---------QKVAD-----VYEYYERELRKNNALDFDDLLLVAVKLLQSNEAV 205
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDS 527
+Y ++ +++DE+QDT+ QY L ++LASH + I +VGD DQSI+++ GADI
Sbjct: 206 LDKYSKRFRYVMIDEYQDTNHAQYLLAKLLASHWKNIAVVGDADQSIYAWRGADIQNILD 265
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KD+ N I+L +NYRST+ I++AA+++I++N R + KN+ TD + G+KI +
Sbjct: 266 FEKDYPNCTSIKLEQNYRSTKIILDAANAVIENNEGRPK-KNLWTDKTEGAKIQHFTAQS 324
Query: 588 EDAQCAFIIDKIL-EHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
E + AFI D I +H +G YG +AILYR +V + A +R +P+ + G
Sbjct: 325 EHEEAAFIGDTIAKKHDIHG----VPYGDMAILYRTNAQSRVLEEALIKRALPYTMVGGT 380
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSF 705
FY +K ++ ++A LR DD R+ KR I
Sbjct: 381 KFYDRKEIKDVLAYLRVLYNPFDDLSLLRIINV--------PKRSI-------------- 418
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYL 765
GA + G + +TL + ++ ++ +K
Sbjct: 419 --------GATTVAKLQDYARANGTSLFMTLTQLH-----------LVDTIKGKTKEK-- 457
Query: 766 LEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN-- 823
LE+ ++ F L+ E D ++VL +L + D T + A EE QD+ N
Sbjct: 458 LEEFGILIF---TLVAEMED-KTVLD-ILESILD--RTGYLAQLEESTDPQDQARAENIG 510
Query: 824 ----VLKAFIDYISERETEHFRTQR---------HDNENSVTLTTIHQSKGLEWDIVFVA 870
V K F D E F Q E+ VTL T+H +KGLE+ IVF+
Sbjct: 511 ELLSVAKDFQDTNPNGTVEDFLEQVALVNDVDSFEQEESKVTLMTLHAAKGLEFPIVFLG 570
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ--- 927
E P +N + +EEERRL YV +TRA K+L+I +
Sbjct: 571 GLEEGLFPHSRTL---MNPE--EIEEERRLAYVGITRAEKELYISNATTRTVFGRTSSYL 625
Query: 928 PSRFLKEIPHHLRE-VQAEQSVQD 950
PSRF+ EIP L + ++A++ V D
Sbjct: 626 PSRFIDEIPEELVDGLRAKRKVPD 649
>gi|423300181|ref|ZP_17278206.1| hypothetical protein HMPREF1057_01347 [Bacteroides finegoldii
CL09T03C10]
gi|408473990|gb|EKJ92512.1| hypothetical protein HMPREF1057_01347 [Bacteroides finegoldii
CL09T03C10]
Length = 790
Score = 240 bits (613), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 216/752 (28%), Positives = 353/752 (46%), Gaps = 118/752 (15%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
Y++ LN+ Q AA P L++AG GSGK G +P NILA+TFT
Sbjct: 5 YIKELNESQC-AAVTYNDGPSLVIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQR---R 346
AA EM++RI VG A+ L + TFHS ++ R+ A+ + TS+F IY + R
Sbjct: 64 AAREMKERIARQVGAERARYLWMGTFHSIFSRILRAEAQYIGFTSQFTIYDTADSKSLLR 123
Query: 347 AIIEAVRLLEN--EKILVVKRIST---DMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
+II+ + L E + V RIS ++T G+
Sbjct: 124 SIIKEMGLDEKTYKPGTVQARISNAKNHLVTPTGYAA----------------------- 160
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
NK +G D+A K PA I D I Y R A+D+ DL+ + L
Sbjct: 161 --NKEAYEG-DMAV---KMPA----IRD-----IYTRYWERCRQAGAMDFDDLLVYTYIL 205
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSL-LQILASHNRITIVGDDDQSIFSFNGA 520
+PEV YQD ++ I+VDE+QDT+ Q+S+ LQ+ + + +VGDD QSI+SF GA
Sbjct: 206 FRDYPEVLARYQDQFRYILVDEYQDTNYAQHSIVLQLTKENQHVCVVGDDAQSIYSFRGA 265
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
DI F K + N K +L +NYRST+ IV AA+SLI+ N ++ + K V ++ G I
Sbjct: 266 DIDNILYFTKTYPNTKVFKLEQNYRSTQTIVCAANSLIEKNERQIR-KAVFSEKEKGEAI 324
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
+ + +++ + + +K+ E Y AILYR ++F+ A R+R +P+
Sbjct: 325 GVFQAYSDVEEGDIVANKVAELRRE---YHYGYADFAILYRTNAQSRIFEEALRKRSMPY 381
Query: 641 NIHG-VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIST 699
I+G ++FY++K ++ +IA R + D+ ++R+ + + I +T
Sbjct: 382 KIYGGLSFYQRKEIKDVIAYFRLVVNPNDEEAFKRIIN---YPARGIGDTTVGKIISAAT 438
Query: 700 IRKCSFISAACD--IFGAKIS-GTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI--- 753
S S C+ +G I+ GT + QG + L+ + + + I I
Sbjct: 439 DHGVSLWSTLCEPLTYGLNINKGTHTK---LQGFRALIEGFITGQADKNAYEIGVDIIRQ 495
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
+ + N V Q D L ++N ++ L+ + DF + + +EEGN
Sbjct: 496 SGIMNDVCQ----------DTSPENLSRKEN-----IEELVNGMNDFCALR----QEEGN 536
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+ ++ + D S++ D+ +TL T+H +KGLE+ VFV
Sbjct: 537 PNISLTDFLSEIALLTDQDSDKA---------DDGEKITLMTVHSAKGLEFKNVFVVGLE 587
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSR 930
E P +G V + ++EEERRL YVA+TRA + ++ + + ++ PSR
Sbjct: 588 ENLFP-----SGMVGDSPRALEEERRLFYVAITRAEEHCYLSFAKTRFRYGKMEFGSPSR 642
Query: 931 FLKEIPHHLREVQAEQSVQDQHENIPEGTAQF 962
FL++I H ++ E + ++ EG +F
Sbjct: 643 FLRDIDIHYLKMPHEAEIS---RSVDEGAGRF 671
>gi|302553643|ref|ZP_07305985.1| ATP-dependent DNA helicase PcrA [Streptomyces viridochromogenes DSM
40736]
gi|302471261|gb|EFL34354.1| ATP-dependent DNA helicase PcrA [Streptomyces viridochromogenes DSM
40736]
Length = 826
Score = 240 bits (613), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 214/727 (29%), Positives = 328/727 (45%), Gaps = 110/727 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LND Q AA +PLLIVAG GSGK + P ILA+TFT
Sbjct: 70 LEGLNDNQ-RAAVVHSGSPLLIVAGAGSGKTRVLTHRIAHLLAERDVHPGQILAITFTNK 128
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A + + TFHS +++ R ++KL TS F IY +R +
Sbjct: 129 AAGEMKERVEQLVGP-RANAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMA 187
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R L+ L KR F SF + + + +
Sbjct: 188 LVCRDLD----LDPKR---------------------------FPPKSFS-AKISNLKNE 215
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+D + + F K + A Y LR NALD+ DLI +V LL FP+V
Sbjct: 216 LIDEEDFAAQASDGFEKTLAQAYAM----YQSRLREANALDFDDLIMTTVNLLRAFPDVA 271
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN----------------RITIVGDDDQS 513
+ Y+ ++ ++VDE+QDT+ QY+L++ L + +VGD DQS
Sbjct: 272 EHYRRRFRHVLVDEYQDTNHAQYALVRELVGTTEHPVDVPPGPEDVPPAELCVVGDADQS 331
Query: 514 IFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTD 573
I++F GA I F +D+ + I L +NYRST+ I+ AA+++I+ N R + KN+ T+
Sbjct: 332 IYAFRGATIRNILQFEEDYPDATTILLEQNYRSTQTILSAANAVIERNESR-RPKNLWTN 390
Query: 574 NSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
G++I E + F+ ++I G A G +A+ YR +VF+ F
Sbjct: 391 AGTGAQITGYVADTEHDEAQFVAEEIDRLTDAGEAKA---GDVAVFYRTNAQSRVFEEIF 447
Query: 634 RERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID 692
+P+ + GV FY +K VR ++A LR D P RR+ + ++ R
Sbjct: 448 IRVGLPYKVVGGVRFYERKEVRDVLAYLRVLANPEDSVPLRRILN---VPKRGIGDRAEA 504
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV 752
ID +S K SF A + A G RS R+ +E + +V + V
Sbjct: 505 MIDALSQREKISFPQALKRVDEA--YGMAARST-NAVRRFNALMEDLRTIVESGAGPATV 561
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
+ +V YL E +A D +D LQ L A +F +E G
Sbjct: 562 LEAVLERT--GYLAELQASTD-------PQDETRIENLQELAAVAMEF-------EQERG 605
Query: 813 NVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKA 872
+D++G L F++ ++ D + +TL T+H +KGLE+ +VF+
Sbjct: 606 ---EDEQGT---LADFLEQVALVADSDQIPDEEDGDGVITLMTLHTAKGLEFPVVFLTGM 659
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPS 929
+ P + G E +EEERRL YV +TRAR++L++ M + W PS
Sbjct: 660 EDGVFPHMRAL-GQTKE----LEEERRLAYVGITRARERLYLTRSTMRSAWGQPSYNPPS 714
Query: 930 RFLKEIP 936
RFL+EIP
Sbjct: 715 RFLEEIP 721
>gi|153809769|ref|ZP_01962437.1| hypothetical protein RUMOBE_00150 [Ruminococcus obeum ATCC 29174]
gi|149833947|gb|EDM89027.1| ATP-dependent DNA helicase PcrA [Ruminococcus obeum ATCC 29174]
Length = 744
Score = 240 bits (613), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 214/749 (28%), Positives = 340/749 (45%), Gaps = 132/749 (17%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAA 291
+LND+Q EA PLLI+AG GSGK G++P NILA+TFT AA
Sbjct: 7 TLNDRQKEAVL-HTDGPLLILAGAGSGKTRVLTHRIAYLIAEKGVNPWNILAITFTNKAA 65
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEA 351
EMR+R+ I G + + +STFHS +++ R H ++L + F IY Q+ I E
Sbjct: 66 HEMRERVDKIAG-SEGGSVWVSTFHSTCVRILRRHIDRLGYDNNFTIYDADDQKTLIKEI 124
Query: 352 VRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
R + + K++ L L Q + + + +
Sbjct: 125 CRKMN----IDTKKVKERAL----------------------------LAQISHAKDELL 152
Query: 412 DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQE 471
+ + A+F + + A + Y LR NALD+ DLI +V+L +V Q
Sbjct: 153 NPDEMEMNAGADFNQ---KRAAQVYREYQAALRRNNALDFDDLICKTVELFQNCGDVLQS 209
Query: 472 YQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRK 530
YQ+ ++ I+VDE+QDT+ Q+ + +LAS + + +VGDDDQSI+ F GA+I F +
Sbjct: 210 YQERFRYIMVDEYQDTNTAQFKFVSLLASRYENLCVVGDDDQSIYRFRGANIGNILGFER 269
Query: 531 DFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDA 590
F + K IRL +NYRST+ I+ AA+ +I +N +R + K + T+N G KI ++ N
Sbjct: 270 VFPDAKVIRLEQNYRSTQNILNAANGVIANNTERKE-KTLWTENPEGEKIHFRQFMNGYE 328
Query: 591 QCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVAFYR 649
+ F++ I G A Y + A+LYR ++F+ IP+ I GV FY
Sbjct: 329 EAEFVVGDIARRHREGTA---EYHNCAVLYRTNAQSRLFEEKCLLANIPYKIVGGVNFYA 385
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAA 709
+K ++ ++ L+T DD RR+ + ++ + I + + SF A
Sbjct: 386 RKEIKDLLCYLKTVDNAADDLAVRRILN---VPKRGIGATTVGRIQDYADMMNISFYDAL 442
Query: 710 CDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQR 769
++ PSI ++ V V L+ +
Sbjct: 443 -------------------------------RVAEEVPSIGRSLSKVDGFVTFIQSLKSK 471
Query: 770 AVVDFDGGKLLNEDNDLRSVLQYLLADVT----------DFLSTKFTAAKEEGNVDQDKK 819
A + +LL E DL + L A+ T D L +K T + EE ++++
Sbjct: 472 AQA-YSVSELLEEIIDLTGYVDELKAEDTEEARARVENIDELISK-TVSYEETMKAENRE 529
Query: 820 GCIN------VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
++ L A ID + E N++ V L T+H +KGLE+ V++A
Sbjct: 530 ATLSGFLEEIALIADIDSVDE------------NQDYVVLMTLHSAKGLEFPYVYLAGME 577
Query: 874 ETEIP-LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPS 929
+ P + F+G + +EEERRL YV +TRA K+L + M+ Q + S
Sbjct: 578 DGMFPSSMCIFSG----DQSDLEEERRLCYVGITRAMKELTMTSAQQRMVRGETQYNRVS 633
Query: 930 RFLKEIPHHLREVQAEQSVQDQHENIPEG 958
RF++EIP L V +VQ+ IPE
Sbjct: 634 RFVREIPREL--VDLGHTVQEHKPKIPEA 660
>gi|420146834|ref|ZP_14654195.1| ATP-dependent DNA helicase PcrA [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398399876|gb|EJN53476.1| ATP-dependent DNA helicase PcrA [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 757
Score = 240 bits (613), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 211/736 (28%), Positives = 344/736 (46%), Gaps = 103/736 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P ILA+TFT
Sbjct: 7 LTGMNDKQQEA-VKQTEGPLLIMAGAGSGKTRVVTHRIAYLIEELDVAPWRILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSE-FLIYGHGQQRRAI 348
AA EMR+R+ S++ + A+ + +STFH+ +++ R +K+ S F I G+Q +
Sbjct: 66 AAREMRERVASLLNE-RAESVWVSTFHALCVRILRRDIDKMSGYSRSFTIADPGEQNTLM 124
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
+IL + I T G +S+ K N+ +
Sbjct: 125 ---------RRILTQQNIDPKKYTPRSILG---------------EISNAK----NQLQT 156
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
A AS TP E EI A E Y L + ALD+ DLI +++L PE
Sbjct: 157 PKDYAAAAS--TPFE------EIVAKCYEPYQNELEANQALDFDDLIMLTIELFRKSPET 208
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDS 527
YQ+ ++ I VDE+QDT+ QY+L+ +LA ++ + +VGD DQSI+ + GAD+S +
Sbjct: 209 LDYYQEKFRYIHVDEYQDTNQAQYTLVNMLAQRYHNLCVVGDADQSIYGWRGADMSNIMN 268
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KD+ K + L +NYRST+ I++AA+ +I +NV R + K + T+N G+KI N
Sbjct: 269 FEKDYPEAKTVMLEQNYRSTQTILQAANDVIDNNVYR-KPKKLWTENDAGAKISYYRGQN 327
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
E + F++ KI E ++ YG A+LYR + + + IP+ + G
Sbjct: 328 EHDEARFVVAKIQEEMADND---FRYGDFAVLYRTNAQSRTIEENLVKANIPYKMVGGHK 384
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFI 706
FY +K ++ ++A LR + D + R+ + ++ ID + + S +
Sbjct: 385 FYDRKEIKDVLAYLRVIVNPDDSIDFERIVNS---PKRGIGNGTIDKLRDFANYNNWSLL 441
Query: 707 SAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLL 766
AA ++ A +G R++ T G + K R E ++ + T +L
Sbjct: 442 EAARNVDLA--NGIATRARHTLGSFATTMTALRDK--RTEWDVTELTTQ---------ML 488
Query: 767 EQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST--KF-TAAKEEGNVDQDKKGCIN 823
EQ +D L ++ L + Q + ++ +FLS +F +E + D D+
Sbjct: 489 EQTGYLD-----ALKQEKTLEA--QTRIENIQEFLSVTKEFDDGYDDEADADSDR----- 536
Query: 824 VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
F+D++++ + + + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 537 ----FVDFLTDLALVSDQDDIEEESSEVTLMTLHAAKGLEFPVVFMMGMEEGIFPLSRAM 592
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHHLR 940
+ +EEERRL YV +TRA+KKL++ M+ Q SRF+ EI L
Sbjct: 593 M-----ENDELEEERRLAYVGITRAKKKLYLTNAYSRMLYGRTQSNPASRFVGEIDEDLI 647
Query: 941 EVQAEQSVQDQHENIP 956
+ + + NIP
Sbjct: 648 LFENKTAASLSERNIP 663
>gi|443625020|ref|ZP_21109474.1| putative ATP-dependent DNA helicase PcrA [Streptomyces
viridochromogenes Tue57]
gi|443341450|gb|ELS55638.1| putative ATP-dependent DNA helicase PcrA [Streptomyces
viridochromogenes Tue57]
Length = 828
Score = 240 bits (613), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 213/727 (29%), Positives = 329/727 (45%), Gaps = 108/727 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LN+ Q AA TPLLIVAG GSGK + P ILA+TFT
Sbjct: 70 LEGLNENQ-RAAVVHSGTPLLIVAGAGSGKTRVLTHRIAHLLAERNVHPGQILAITFTNK 128
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A + + TFHS +++ R ++KL TS F IY +R +
Sbjct: 129 AAGEMKERVEQLVGP-RANAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMA 187
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R L+ L KR F SF + + + +
Sbjct: 188 LVCRDLD----LDPKR---------------------------FPPKSFS-AKISNLKNE 215
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+D + + F K + A Y LR NALD+ DLI +V LL FP+V
Sbjct: 216 LIDEEDFAAQANDGFEKTLAQAYAL----YQSRLREANALDFDDLIMTTVNLLRAFPDVA 271
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN----------------RITIVGDDDQS 513
+ Y+ ++ ++VDE+QDT+ QY+L++ L + + +VGD DQS
Sbjct: 272 EHYRRRFRHVLVDEYQDTNHAQYALVRELVGTSEHPVDVPPSEYDIPPAELCVVGDADQS 331
Query: 514 IFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTD 573
I++F GA I F +D+ + I L +NYRST+ I+ AA+++I+ N R + KN+ T+
Sbjct: 332 IYAFRGATIRNILQFEEDYPDATTILLEQNYRSTQTILSAANAVIERNESR-RPKNLWTN 390
Query: 574 NSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
G++I E + F+ D+I G A G +A+ YR +VF+ F
Sbjct: 391 AGAGARITGYVADTEHDEAQFVADEIDRLTDAGEAKA---GDVAVFYRTNAQSRVFEEVF 447
Query: 634 RERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID 692
+P+ + GV FY +K VR ++A LR D P RR+ + ++ R
Sbjct: 448 IRVGLPYKVVGGVRFYERKEVRDVLAYLRVLANPEDSVPLRRILN---VPKRGIGDRAEA 504
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV 752
ID +S K SF A + A G RS R L +E + +V + V
Sbjct: 505 MIDALSQREKISFPQALKRVDEA--YGMAARSTNAVKRFNAL-MEELRTIVESGAGPATV 561
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
+ +V YL E +A D +D LQ L A +F ++E
Sbjct: 562 LEAVLERT--GYLAELQASTD-------PQDETRIENLQELAAVALEF--------EQEA 604
Query: 813 NVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKA 872
+ G + L+ + ++ +++ + D +TL T+H +KGLE+ +VF+
Sbjct: 605 GEGEAPGGLADFLER-VALVA--DSDQIPDEEEDGSGVITLMTLHTAKGLEFPVVFLTGM 661
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPS 929
+ P + G E +EEERRL YV +TRAR++L++ M + W PS
Sbjct: 662 EDGVFPHMRAL-GQTKE----LEEERRLAYVGITRARERLYLTRSSMRSAWGQPSYNPPS 716
Query: 930 RFLKEIP 936
RFL+EIP
Sbjct: 717 RFLEEIP 723
>gi|302386124|ref|YP_003821946.1| UvrD/REP helicase [Clostridium saccharolyticum WM1]
gi|302196752|gb|ADL04323.1| UvrD/REP helicase [Clostridium saccharolyticum WM1]
Length = 762
Score = 240 bits (613), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 218/756 (28%), Positives = 347/756 (45%), Gaps = 133/756 (17%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAA 291
+LN Q EA PLL++AG GSGK I+P NILA+TFT AA
Sbjct: 6 TLNPMQKEAVL-HTEGPLLVLAGAGSGKTRVLTHRIAYLIEEKSINPWNILAITFTNKAA 64
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEA 351
EMR+R+ +VG A + +STFHS +++ R H E L T+ F IY Q+ +
Sbjct: 65 GEMRERVDRLVGFG-ADSIWVSTFHSSCVRILRRHIESLGYTTNFTIYDSDDQKTLMRHV 123
Query: 352 VRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAML-FFSMSSFKLCQYNKFERDG 410
++ L+ M ++ AML F S + +L +FE++
Sbjct: 124 LKGLD-----------------------MDPKIYKDRAMLGFISTAKNELVTAEEFEQN- 159
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
A G +FR+ + A I + Y LR NALD+ DLI +V+L PE+
Sbjct: 160 -----AGG----DFRQ---KKVAQIYKEYQNQLRKNNALDFDDLIMKAVQLFQNNPEILD 207
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDSFR 529
YQ+ +K I+VDE+QDT+ Q+ L+ +LA R + +VGDDDQSI+ F GA+I +F
Sbjct: 208 YYQERFKYIMVDEYQDTNTAQFKLISLLAGKYRNLCVVGDDDQSIYKFRGANIENILNFE 267
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
K + K I+L +NYRS++ I+ AA+ +I+HN R K + T N G + K+ N
Sbjct: 268 KAYPGAKVIKLEQNYRSSQSILNAANEVIRHNRGRKD-KTLWTANEEGPLVQFKQFENAS 326
Query: 590 AQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFY 648
+ I+ I +S Y A+LYR ++ + + +P+ + GV FY
Sbjct: 327 EEADAIVRDIRNSSS-------EYQDCAVLYRTNAQSRLIEEKCLQHNVPYRMVGGVNFY 379
Query: 649 RKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISA 708
++K ++ I++ L+T G DD R+ KR I S R +F S
Sbjct: 380 QRKEIKDILSYLKTIANGRDDLSSLRIINV--------PKR---GIGATSLGRVQAFASE 428
Query: 709 ACDIFGAKISGTFKRSQLTQG-----RKVLLTLEMI----SKLVRREPSISAVITSVANM 759
G + F R++ G K+L E+I ++L SI +I + +
Sbjct: 429 ----HGFAVYDAFCRAKAVPGLGKTAEKILKFTELIEDFRNRLDEETYSIHDLIEDILDE 484
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFL--STKFTAAKEEGNVDQD 817
+ LE +++ Q L ++ + + + F E N+++
Sbjct: 485 TGYQKELETEGEIEY----------------QTRLENIEELINKAVSFEGEHEHPNLNEF 528
Query: 818 KKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
+ L A ID + D+EN VTL T+H +KGLE+ V+++ +
Sbjct: 529 LEEV--ALVADIDRMD------------DSENRVTLMTLHSAKGLEFPRVYLSGMEDGLF 574
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKE 934
P + + E +VEEERRL YV +TRAR L + M++ + + SRF++E
Sbjct: 575 PSMMSISSDDKE---AVEEERRLCYVGITRARNFLMMTAARQRMVNGETRYSKISRFIEE 631
Query: 935 IPHHLRE-------VQAEQSVQDQHENIPEGTAQFT 963
IP L + + A +++ +P G A+ T
Sbjct: 632 IPGELLDSNKLEPRLSASRTLNYDDSGLPWGKARAT 667
>gi|452992605|emb|CCQ95943.1| ATP-dependent DNA helicase [Clostridium ultunense Esp]
Length = 732
Score = 240 bits (613), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 220/726 (30%), Positives = 352/726 (48%), Gaps = 130/726 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++ LND+Q EA PLLI+AG GSGK GI P NILA+TFT
Sbjct: 4 IKGLNDRQKEAVL-HTEGPLLILAGAGSGKTRVLTHRIAYLVEEKGIFPGNILAITFTNK 62
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM++R+ ++ ++ + TFHS +++ R + +K+ F IY Q +
Sbjct: 63 AANEMKERVDYLL-DGNIDDIWMGTFHSVCVRILRRNIDKIGYDRSFSIYDRDDQITVVK 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
E ++ L +S DM R+ L +++++ +D
Sbjct: 122 ECIKDL---------NLSKDMYKE-------RSVLSVISSL-----------------KD 148
Query: 410 GM---DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
M D + R +G+ I Y L++ NALD+ DLI +V+LL + P
Sbjct: 149 KMTDPDTYINQNYSDYYSRNVGE-----IYALYEKKLKANNALDFDDLIIKTVELLKSNP 203
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGF 525
+V YQ +K I VDEFQDT+ +QY L+++++ R I +VGDDDQSI+ + GADIS
Sbjct: 204 DVLDYYQKKFKHIFVDEFQDTNKIQYKLVKLISERYRNICVVGDDDQSIYGWRGADISNI 263
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
F KDF N K I+L +NYRST+ I+ A+ +I++N R + K + TDN G++++++
Sbjct: 264 LDFEKDFPNTKIIKLEQNYRSTQNILNVANHVIKNNSSRKE-KKLWTDNEEGNQVVVESL 322
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HG 644
+ + + F+ +K+ + + G AILYR + F+ F + IP+ I G
Sbjct: 323 LDSEEEAYFVANKVEKLINEGYKP----SDFAILYRTNAQSRTFEEIFMRKSIPYKIVGG 378
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCS 704
+ FY +K ++ IIA L+ DD +R+ KR I + +T+ K
Sbjct: 379 LRFYDRKEIKDIIAYLKLIQNPVDDISLKRIINV--------PKRGIGN----ATLGK-- 424
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKL-VRREPSISAVI------TSVA 757
I + G I T LL +E +S L R + ++ + + +++
Sbjct: 425 -IEEYANETGESIYST------------LLKVEKVSNLSTRAKNNLKSFVDMINKFMAMS 471
Query: 758 NMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST--KFTAAKEEGNVD 815
++ K LE+ V K L E+ + S Q L ++ +F+S F EG+++
Sbjct: 472 EVMGLKEFLEE-VVYGIGYIKELEEEASIES--QTRLDNIKEFISVAIDFEVRYPEGSLE 528
Query: 816 QDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANET 875
A I +S+ + + D +NSVTL T+H +KGLE+ +VF+ E
Sbjct: 529 D--------FLATISLLSDVD------KTEDIDNSVTLLTVHSAKGLEFPVVFMVGMEEG 574
Query: 876 EIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMM-----DANWQLLQPSR 930
P+ + T +EEERRL YVA+TRA K LFI +V + + N+ L PSR
Sbjct: 575 LFPI-----SRALDDETELEEERRLCYVAITRAEKLLFITHVKLRTIYGNTNYSL--PSR 627
Query: 931 FLKEIP 936
F+ EIP
Sbjct: 628 FINEIP 633
>gi|333395722|ref|ZP_08477539.1| ATP-dependent DNA helicase PcrA [Lactobacillus coryniformis subsp.
coryniformis KCTC 3167]
Length = 757
Score = 240 bits (613), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 211/736 (28%), Positives = 344/736 (46%), Gaps = 103/736 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P ILA+TFT
Sbjct: 7 LTGMNDKQQEA-VKQTEGPLLIMAGAGSGKTRVVTHRIAYLIEELDVAPWRILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSE-FLIYGHGQQRRAI 348
AA EMR+R+ S++ + A+ + +STFH+ +++ R +K+ S F I G+Q +
Sbjct: 66 AAREMRERVASLLNE-RAESVWVSTFHALCVRILRRDIDKMTGYSRSFTIADPGEQNTLM 124
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
+IL + I T G +S+ K N+ +
Sbjct: 125 ---------RRILTQQNIDPKKYTPRSILG---------------EISNAK----NQLQT 156
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
A AS TP E EI A E Y L + ALD+ DLI +++L PE
Sbjct: 157 PKDYAAAAS--TPFE------EIVAKCYEPYQNELEANQALDFDDLIMLTIELFRKSPET 208
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDS 527
YQ+ ++ I VDE+QDT+ QY+L+ +LA ++ + +VGD DQSI+ + GAD+S +
Sbjct: 209 LDYYQEKFRYIHVDEYQDTNQAQYTLVNMLAQRYHNLCVVGDADQSIYGWRGADMSNIMN 268
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KD+ K + L +NYRST+ I++AA+ +I +NV R + K + T+N G+KI N
Sbjct: 269 FEKDYPEAKTVMLEQNYRSTQTILQAANDVINNNVYR-KPKKLWTENDAGAKISYYRGQN 327
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
E + F++ KI E ++ YG A+LYR + + + IP+ + G
Sbjct: 328 EHDEARFVVAKIQEEMADND---FRYGDFAVLYRTNAQSRTIEENLVKANIPYKMVGGHK 384
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFI 706
FY +K ++ ++A LR + D + R+ + ++ ID + + S +
Sbjct: 385 FYDRKEIKDVLAYLRVIVNPDDSIDFERIVNS---PKRGIGNGTIDKLRDFANYNNWSLL 441
Query: 707 SAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLL 766
AA ++ A +G R++ T G + K R E ++ + T +L
Sbjct: 442 EAARNVDLA--NGIATRARHTLGSFATTMTALRDK--RAEWDVTELTTQ---------ML 488
Query: 767 EQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST--KF-TAAKEEGNVDQDKKGCIN 823
EQ +D L ++ L + Q + ++ +FLS +F +E + D D+
Sbjct: 489 EQTGYLD-----ALKQEKTLEA--QTRIENIQEFLSVTKEFDDGYDDEADADSDR----- 536
Query: 824 VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
F+D++++ + + + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 537 ----FVDFLTDLALVSDQDDIEEESSEVTLMTLHAAKGLEFPVVFMMGMEEGIFPLSRAM 592
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHHLR 940
+ +EEERRL YV +TRA+KKL++ M+ Q SRF+ EI L
Sbjct: 593 -----MENDELEEERRLAYVGITRAKKKLYLTNAYSRMLYGRTQSNPASRFVGEIDEDLI 647
Query: 941 EVQAEQSVQDQHENIP 956
+ + + NIP
Sbjct: 648 LFENKTAASLSERNIP 663
>gi|297201841|ref|ZP_06919238.1| ATP-dependent DNA helicase PcrA [Streptomyces sviceus ATCC 29083]
gi|197717318|gb|EDY61352.1| ATP-dependent DNA helicase PcrA [Streptomyces sviceus ATCC 29083]
Length = 826
Score = 240 bits (613), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 212/727 (29%), Positives = 333/727 (45%), Gaps = 108/727 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LN+ Q AA TPLLIVAG GSGK + P ILA+TFT
Sbjct: 69 LEGLNENQ-RAAVVHSGTPLLIVAGAGSGKTRVLTHRIAHLLGERNVHPGQILAITFTNK 127
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A + + TFHS +++ R ++KL TS F IY +R +
Sbjct: 128 AAGEMKERVEQLVGP-RANAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMA 186
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R L+ L KR + SF + + + +
Sbjct: 187 LVCRDLD----LDPKR---------------------------YPPKSFS-AKISNLKNE 214
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+D + + F K + A Y LR NALD+ DLI +V LL FP+V
Sbjct: 215 LIDEEDFAAQATDGFEKTLAQAYAM----YQSRLREANALDFDDLIMTTVNLLRAFPDVS 270
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQIL------------ASHN----RITIVGDDDQS 513
+ Y+ ++ ++VDE+QDT+ QY+L++ L + H+ + +VGD DQS
Sbjct: 271 EHYRRRFRHVLVDEYQDTNHAQYALVRELVGTSEHPVDVPPSEHDLPPAELCVVGDADQS 330
Query: 514 IFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTD 573
I++F GA I F +D+ N I L +NYRST+ I+ AA+++I+ N R + KN+ T+
Sbjct: 331 IYAFRGATIRNILQFEEDYPNATTILLEQNYRSTQTILTAANAVIERNESR-RPKNLWTN 389
Query: 574 NSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
G++I E + F+ D+I G A G +A+ YR +VF+ F
Sbjct: 390 AGAGARITGYVADTEHDEAQFVADEIDRLTDAGDAKA---GDVAVFYRTNAQSRVFEEVF 446
Query: 634 RERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID 692
+P+ + GV FY +K VR ++A LR D P RR+ + ++ R
Sbjct: 447 IRVGLPYKVVGGVRFYERKEVRDVLAYLRVLANPEDSVPLRRILN---VPKRGIGDRAEA 503
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV 752
ID +S K SF A + A G RS R +L +E + +V + V
Sbjct: 504 MIDALSQREKISFPQALKRVDEAY--GMAARSTNAVKRFNVL-MEELRTIVESGAGPATV 560
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
+ +V YL E +A D +D LQ L A +F E+
Sbjct: 561 LEAVLERT--GYLAELQASTD-------PQDETRIENLQELAAVALEF---------EQE 602
Query: 813 NVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKA 872
+ + ++ G ++ + ++ +++ + D +TL T+H +KGLE+ +VF+
Sbjct: 603 SGEGEETGSLSDFLERVALVA--DSDQIPDEDEDGSGVITLMTLHTAKGLEFPVVFLTGM 660
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPS 929
+ P + G E +EEERRL YV +TRAR++L++ + + W PS
Sbjct: 661 EDGVFPHMRAL-GQTKE----LEEERRLAYVGITRARERLYLTRSSLRSAWGQPSYNPPS 715
Query: 930 RFLKEIP 936
RFL+EIP
Sbjct: 716 RFLEEIP 722
>gi|427393429|ref|ZP_18887207.1| ATP-dependent DNA helicase PcrA [Alloiococcus otitis ATCC 51267]
gi|425730647|gb|EKU93481.1| ATP-dependent DNA helicase PcrA [Alloiococcus otitis ATCC 51267]
Length = 740
Score = 240 bits (612), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 215/725 (29%), Positives = 327/725 (45%), Gaps = 122/725 (16%)
Query: 245 LQSLNDQQLEAACGDMST--PLLIVAGPGSGK---------------GISPSNILAMTFT 287
L +ND+Q +A M+T PLLI+AG GSGK G++P NILA+TFT
Sbjct: 8 LGKMNDKQKQAV---MTTDGPLLIMAGAGSGKTRVLTHRIAYLIQEKGVNPWNILAITFT 64
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM+DR+ +V + + + +STFHS +++ R +++ F I +Q+
Sbjct: 65 NKAAGEMKDRVQKLVSQGGSG-VWVSTFHSMCVRILRRDGDQIGYNRAFTIADPSEQKSL 123
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
+ + ++ L + KR + + L + + +
Sbjct: 124 MKQVLKDLN----IDPKRYNPKAI----------------------------LAEISNAK 151
Query: 408 RDGMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
D +D +RK D E+ A E Y LR A+D+ DLI +V+L
Sbjct: 152 NDLLD--------EQTYRKQADDYFKEVVADCYEAYQRQLRQSEAMDFDDLIMQTVRLFK 203
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADI 522
P+ YQ ++ I VDE+QDT+ QY L+Q+LA + +VGD DQSI+ + GAD+
Sbjct: 204 EKPDTLSYYQAKFQYIHVDEYQDTNQAQYQLVQLLAQRFKNVCVVGDADQSIYGWRGADM 263
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
+F KD+ + I L +NYRST+ I+ AA+ +IQ+N+ R KN+ T N G K+ +
Sbjct: 264 GNILNFEKDYPEAQTIFLEQNYRSTKSIIRAANDVIQNNINRRD-KNLWTANDEGDKVSL 322
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI 642
+E + FI+ I + A YG IAILYR +V + F + IP+ I
Sbjct: 323 YAARSEQDEAQFIVGTIHDLTEGKKA---GYGDIAILYRTNAMSRVIEETFIKSNIPYKI 379
Query: 643 -HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
G FY++K +R +IA L DD + R+ E KR I T+
Sbjct: 380 VGGTGFYQRKEIRDLIAYLTLVANPADDLSFSRIVN--------EPKRGIGP----GTLD 427
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
K + A G + T + T + S+ V R S +I + M
Sbjct: 428 K---LRQAGQEMGWSLYETALNADATN---------LPSRAVNRLLDFSQMIENFRKMT- 474
Query: 762 QKYL----LEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQD 817
+YL L ++ + D K L +D L S Q L ++ +F ++ +E + D
Sbjct: 475 -EYLPITDLTEKILEDTGYQKALEKDRTLES--QARLENLQEF----YSVTQEFDQQEDD 527
Query: 818 KKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
K + L + E R Q VT+ T+H +KGLE+ VF+A E
Sbjct: 528 NKSLLAFLTDLSLLSPADDVEEGRGQ-------VTMMTLHAAKGLEFPYVFIAGMEEGIF 580
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQP---SRFLKE 934
PL E S+EEERRL YV +TRA + L++ MM + Q SRFL E
Sbjct: 581 PLSR-----AAEDPESLEEERRLAYVGITRAEQALYLTRAMMRQLYGRTQANPKSRFLSE 635
Query: 935 IPHHL 939
I L
Sbjct: 636 ISSDL 640
>gi|72162979|ref|YP_290636.1| ATP-dependent DNA helicase PcrA [Thermobifida fusca YX]
gi|71916711|gb|AAZ56613.1| ATP-dependent DNA helicase PcrA [Thermobifida fusca YX]
Length = 754
Score = 240 bits (612), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 198/728 (27%), Positives = 338/728 (46%), Gaps = 97/728 (13%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFT 287
+ L+ LN+ Q AA +PLLI+AG GSGK G+ PS +LA+TFT
Sbjct: 6 QLLEGLNELQ-RAAVLHHGSPLLIIAGAGSGKTRVLTHRIAYLLAERGVRPSEVLAITFT 64
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA+EM++R+ ++G+ TA + + TFHS +++ R A +L S F IY +R
Sbjct: 65 NKAAAEMKERVERLLGERTASAMWVMTFHSACVRILRREAARLGYPSSFTIYDSADSQRL 124
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
+ +L+ E L KR F SF Q + +
Sbjct: 125 M----QLVCRELDLDPKR---------------------------FPPKSFS-AQVSSLK 152
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ +D +G+ + + A + Y L A+D+ DLI +V LL FPE
Sbjct: 153 NELVDYDTFAGRA----ETVQERALAEAYQLYQQRLYEAGAMDFDDLIMVTVHLLQMFPE 208
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-------RITIVGDDDQSIFSFNGA 520
V + Y+ ++ ++VDE+QDT+ QY+L++ L + +VGD DQSI++F GA
Sbjct: 209 VAEHYRRRFRHLLVDEYQDTNHAQYALIRELVGDGDPATPGPELCVVGDADQSIYAFRGA 268
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
I F +D+ I L +NYRST+ I+ AA+++I HN +R + KN+ + G I
Sbjct: 269 TIRNILEFERDYPQATTILLEQNYRSTQTILSAANAVIAHNTER-RPKNLWSAQGEGEPI 327
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
+ +E + F++ +I G C+ G +A+ YR +V + F +P+
Sbjct: 328 VGYVADDERDEATFVVQEIDALTDAG---TCTPGDVAVFYRTNAQSRVLEEVFVRTGMPY 384
Query: 641 NI-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIST 699
I GV FY +K +R I+A LR D RR+ + ++ +R I++ +
Sbjct: 385 RIVGGVRFYERKEIRDILAYLRVLANPEDSVSLRRILN---VPKRGIGERAEQVIEQFAA 441
Query: 700 IRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANM 759
+ +F A +R+ G +L+ I + V + + + +
Sbjct: 442 QERITFAQA------------LRRADEAPG-IATRSLKAIKEFVALLEELEELAATRSPA 488
Query: 760 VPQKYLLEQRAVVDFDGGKLLN----EDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NV 814
+ +LE+ ++ +L+N +D L+ + +F S+ A EG +
Sbjct: 489 ETIEAVLERTGYLE----ELVNSKDIQDESRVENLEEFVGVAREFESSFDAALAAEGADG 544
Query: 815 DQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
+ + G L F++ +S D +VTL T+H +KGLE+ +VF+ +
Sbjct: 545 ETGRDGAEPTLVDFLEQVSLIADTDQLPDEDDQGGAVTLMTLHSAKGLEFPVVFLTGLED 604
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSRF 931
P + A+ ++ +++EEERRL+YV +TRA+++L++ ++W PSRF
Sbjct: 605 GVFPHLR----ALGDR-SALEEERRLVYVGITRAQERLYLTRAATRSSWGAAAYNPPSRF 659
Query: 932 LKEIPHHL 939
L EIP L
Sbjct: 660 LDEIPAEL 667
>gi|408529823|emb|CCK27997.1| ATP-dependent DNA helicase pcrA [Streptomyces davawensis JCM 4913]
Length = 824
Score = 240 bits (612), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 214/729 (29%), Positives = 330/729 (45%), Gaps = 115/729 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++ LN+ Q AA TPLLIVAG GSGK + P ILA+TFT
Sbjct: 69 IEGLNENQ-RAAVVHSGTPLLIVAGAGSGKTRVLTHRIAHLLAERNVHPGQILAITFTNK 127
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A + + TFHS +++ R ++KL TS F IY +R +
Sbjct: 128 AAGEMKERVEQLVGP-RANAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMA 186
Query: 350 EAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
R L+ + K K S + + N ++ F + FE
Sbjct: 187 LVCRDLDLDPKKFPPKSFSAKISN-------------LKNELI--DEEDFAAQAADGFE- 230
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
KT A+ + Y LR NALD+ DLI +V LL FP+V
Sbjct: 231 ----------KTLAQAYAL-----------YQSRLREANALDFDDLIMTTVNLLRAFPDV 269
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN---------------RITIVGDDDQS 513
+ Y+ ++ ++VDE+QDT+ QY+L++ L + + +VGD DQS
Sbjct: 270 AEHYRRRFRHVLVDEYQDTNHAQYALVRELVGTSEHPVDVPPEAELPPAELCVVGDADQS 329
Query: 514 IFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTD 573
I++F GA I F +D+ + I L +NYRST+ I+ AA+++I+ N R + KN+ T+
Sbjct: 330 IYAFRGATIRNILQFEEDYPDATTILLEQNYRSTQTILTAANAVIERNESR-RPKNLWTN 388
Query: 574 NSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
G++I E + F+ D+I G A G +A+ YR +VF+ F
Sbjct: 389 AGAGARITGYVADTEHDEAQFVADEIDRLTDAGDAKA---GDVAVFYRTNAQSRVFEEIF 445
Query: 634 RERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID 692
+P+ + GV FY +K VR ++A LR D P RR+ + ++ +R
Sbjct: 446 IRVGLPYKVVGGVRFYERKEVRDVLAYLRVLANPEDSVPLRRILN---VPKRGIGERAEA 502
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTL-EMISKLVRREPSISA 751
ID +S K SF A + A G RS T K TL E + +V +
Sbjct: 503 MIDALSQREKISFPQALKRVDEAY--GMAARS--TNAVKRFNTLMEELRTIVESGAGPAT 558
Query: 752 VITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEE 811
V+ +V YL E +A D +D LQ L A +F
Sbjct: 559 VLEAVLERT--GYLAELQASTD-------PQDETRIENLQELAAVALEF----------- 598
Query: 812 GNVDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVA 870
+Q+ + L F++ ++ +++ + D +TL T+H +KGLE+ +VF+
Sbjct: 599 ---EQESEETPGGLADFLERVALVADSDQIPDEDEDGSGVITLMTLHTAKGLEFPVVFLT 655
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQ 927
+ P + G E +EEERRL YV +TRAR++L++ M + W
Sbjct: 656 GMEDGVFPHMRAL-GQTKE----LEEERRLAYVGITRARERLYLTRSSMRSAWGQPSYNP 710
Query: 928 PSRFLKEIP 936
PSRFL+EIP
Sbjct: 711 PSRFLEEIP 719
>gi|379714923|ref|YP_005303260.1| ATP-dependent DNA helicase pcrA [Corynebacterium pseudotuberculosis
316]
gi|377653629|gb|AFB71978.1| ATP-dependent DNA helicase pcrA [Corynebacterium pseudotuberculosis
316]
Length = 785
Score = 240 bits (612), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 222/757 (29%), Positives = 341/757 (45%), Gaps = 132/757 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+Q LN QQ + A +PLLIVAG GSGK G+ P ILA+TFT
Sbjct: 2 VQGLNPQQ-QQAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLMRIRGVQPGQILAITFTNK 60
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EMR+R+ +VG A + +STFHS +++ R A+ + S F IY +R +
Sbjct: 61 AAAEMRERVAHLVGP-IASRMWVSTFHSTCVRILREQAQLVAGLNSNFTIYDSDDSKRLL 119
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
++ + L +K+ + +L +S+ K N+
Sbjct: 120 A----MISKDMNLDIKKFTPRLLGA--------------------GISNLK----NELIS 151
Query: 409 DGMDVAKA-SGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
VA+A S K P E AA+ Y LR NA+D+ DLI +V++ P+
Sbjct: 152 PATAVAEAESTKNPYETTV------AAVYVEYQRRLRQANAVDFDDLIGETVRIFKEHPQ 205
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA----SHNRITIVGDDDQSIFSFNGADIS 523
V + Y+ ++ +++DE+QDT+ QY L+ L + + + +VGD DQSI++F GA I
Sbjct: 206 VTEYYRRRFRHVLIDEYQDTNHAQYVLIHELVGTGETASELCVVGDSDQSIYAFRGATIR 265
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
+ F +D+ N + L +NYRST+ I+ AA+S+I N R + K + T G I
Sbjct: 266 NIEEFERDYPNATTVLLEQNYRSTQTILNAANSVISQNENRRK-KKLWTALGSGDPITGY 324
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-I 642
NE + FI +I A G Y +AI+YR S + + F IP+ +
Sbjct: 325 VADNEHDEARFIAQEIDALADKG----IGYSDMAIMYRTNNSSRAVEDVFMRSGIPYKVV 380
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFK-----------AFLLLEKEEKKRVI 691
G FY +K +R +IA LR D RR+ AFL L E +
Sbjct: 381 GGTRFYERKEIRDVIAYLRLLDNPEDTVSLRRIINTPRRGIGDKAVAFLTLHSENQ---- 436
Query: 692 DHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLT-LEMISKL-------- 742
S A D ++S R GR + + M+S L
Sbjct: 437 ----------GVSLQQALIDASEGQVSLLGAR-----GRNAISGFVNMMSGLRDSAAESV 481
Query: 743 --VRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDF 800
+ P I VI + ++ K LE+ D G L+ N+L SV + ++ +
Sbjct: 482 NEITGMPDIGNVIAQILDITGYKAELEKSN--DPQDGARLDNLNELVSVAREFSSEAAN- 538
Query: 801 LSTKFTAAKEEGN-------VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENS-VT 852
+ AK +G+ V + + G L+AF++ +S Q DNE VT
Sbjct: 539 ---QVAYAKMDGSELDDLAAVGEPEPGS---LQAFLERVSLVADAD---QIPDNEQGLVT 589
Query: 853 LTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKL 912
L T+H +KGLE+ +VF+ + + P + + EERRL YV +TRARK L
Sbjct: 590 LMTLHTAKGLEFPVVFLMGWEDGQFPHLRALGDP-----KELAEERRLAYVGITRARKAL 644
Query: 913 FILYVMMDANW--QLLQP-SRFLKEIPHHLREVQAEQ 946
+I M+ ++W + P SRFL EIP L + + E+
Sbjct: 645 YITRAMLRSSWGNPVTNPASRFLTEIPQELLDWRREE 681
>gi|262340924|ref|YP_003283779.1| ATP-dependent DNA helicase [Blattabacterium sp. (Blattella
germanica) str. Bge]
gi|262272261|gb|ACY40169.1| ATP-dependent DNA helicase [Blattabacterium sp. (Blattella
germanica) str. Bge]
Length = 709
Score = 239 bits (611), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 202/727 (27%), Positives = 337/727 (46%), Gaps = 118/727 (16%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAA 291
SLN Q ++ P+L++AG GSGK GI+PSNILA+TFT AA
Sbjct: 2 SLNSSQ-RKIIETINGPILVLAGAGSGKTRVITYRIVHMIQNIGINPSNILALTFTKKAA 60
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEA 351
EM+ RI +++ + ++T+ TFHS L R + L S + IY QR +
Sbjct: 61 KEMKHRISNMIDQKKLNQITLGTFHSIFSILLRKESHLLGYKSNYTIYD---QRDS---- 113
Query: 352 VRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
EN V+K+I D+ L S+S+ ++ + ++ +
Sbjct: 114 ----EN----VIKKILEDI-------------------NLDISLSTKEIRRIISEYKNNL 146
Query: 412 DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSC---NALDYHDLISCSVKLLSTFPEV 468
+ K + K KI Y ++ C ALD+ D++ + L S FP V
Sbjct: 147 YINKKNNKQSECLIKI-----------YKSYIKRCLQAEALDFDDILLHTNHLFSHFPNV 195
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDS 527
++YQ+ +K I++DE+QDT+ Q ++++ LA H + +VGDD QSI++F GA IS +
Sbjct: 196 LRKYQNKFKYILIDEYQDTNLSQNTIIKSLAFQHKNLFVVGDDAQSIYAFRGAKISNILN 255
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F D+ N K RL +NYRST IV+A++++I N K LK + T+N G K+ I +
Sbjct: 256 FHIDYKNAKVFRLEQNYRSTHHIVQASNNIISFN-KNQILKKIWTNNEKGEKVKIYSASS 314
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG-VA 646
E + ++ I S + Y AILYR + + + A +E+ IP+ I+G ++
Sbjct: 315 EKEEALYVASSIF---SIIKKTKYHYKDFAILYRANMQSNIIEYALKEKNIPYKIYGSIS 371
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFI 706
F ++K +R ++A LR + D+ R+ K+ K+ I I +S + +
Sbjct: 372 FEKRKEIRDLLAYLRIIVNSNDEESLLRIL-------KKGNKKTIKSILDLSKKIRITVY 424
Query: 707 SAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLL 766
+I + + + + ++ T+E K ++ + +
Sbjct: 425 EIIKNIENYQHLLILNQKTKNKLKNLISTIEKFRKNTEKKDAFAIA-------------- 470
Query: 767 EQRAVVDFDGGKLLNED--NDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINV 824
+ +V+F LL ED N QY+L ++ ++S + K+ G +
Sbjct: 471 --KEIVNF----LLKEDPKNYKNENFQYILNNIFCYVSEQ-KKLKDNGEIS--------- 514
Query: 825 LKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFN 884
L F+ Y E + + EN V+L T+H SKGLE+ IVF+ E P +
Sbjct: 515 LSGFLQYFY-LEIDEDMNHDENEENKVSLMTVHLSKGLEFSIVFIIGLEENLFPSKSSLD 573
Query: 885 GAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSRFLKEIPHHLRE 941
+EEERRL YVA+TRA+KK + Y W ++ PSRF+ E+ + +
Sbjct: 574 NQF-----KIEEERRLFYVALTRAQKKAVLTYARSRFLWGERKMTLPSRFINELNKNFID 628
Query: 942 VQAEQSV 948
+ + S+
Sbjct: 629 RENQNSI 635
>gi|423343639|ref|ZP_17321352.1| hypothetical protein HMPREF1077_02782 [Parabacteroides johnsonii
CL02T12C29]
gi|409214661|gb|EKN07670.1| hypothetical protein HMPREF1077_02782 [Parabacteroides johnsonii
CL02T12C29]
Length = 772
Score = 239 bits (610), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 217/734 (29%), Positives = 351/734 (47%), Gaps = 132/734 (17%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTT 288
+YL+ LN+ Q EA P L+VAG GSGK G+ P +ILA+TFT
Sbjct: 3 EYLKQLNESQREAVVY-TDGPSLVVAGAGSGKTRVLTYKIAYLLRQGLPPQSILALTFTN 61
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQR--- 345
AA EM++RI S+ + TA+ L + TFHS ++ RS AE++ S F IY +
Sbjct: 62 KAAREMKERIASLTDERTARRLWVGTFHSIFSRILRSEAERIGYPSNFTIYDATDSKSLL 121
Query: 346 RAIIEAVRLLENEKI----LVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
R+I++ ++L ++K+ +V RIS NA++ + ++K
Sbjct: 122 RSIMKEMQL--DDKVYRLGMVQSRISN-----------------AKNALITYK--AYK-- 158
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
Q+ + + +D K P + I + Y + A+D+ DL+ + L
Sbjct: 159 QHKELVQHDID-----SKVP---------LLREIYKRYQNRCQQAGAMDFDDLLLQTNIL 204
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGA 520
P+V ++Y+ ++ ++VDE+QDT+ Q+ ++Q L H RI +VGDD QSI+SF GA
Sbjct: 205 FRDHPDVLEKYRSFFQFVLVDEYQDTNFAQHLIVQRLCEVHRRICVVGDDAQSIYSFRGA 264
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
+I F+ + + +L RNYRST+ IV AA+SLI N K+ Q K V ++ GSK+
Sbjct: 265 NIDNILQFKNQYPGCRIFKLERNYRSTQNIVNAANSLIHKNTKQIQ-KTVYSEKEEGSKV 323
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
I +++ + + KI + Y AILYR ++ + A R+R IP+
Sbjct: 324 AICSSYSDYEEGYAVAGKINDMRMRN----YDYADFAILYRTNAQSRILEEALRKRGIPY 379
Query: 641 NIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRV--FKAFLLLEKEEKKRVIDHIDKI 697
I+ G++FY++K V+ +I+ LR + D+ ++RV + A + + K ++ D
Sbjct: 380 KIYGGLSFYQRKEVKDVISYLRLIVNPHDEEAFKRVLNYPARGIGDTTLNKLIVAATD-- 437
Query: 698 STIRKCSFISAACDIFGAKI---SGTFKR----SQLTQG---RKVLLTLEMISKLVRREP 747
S + D G + +GT K+ +L G R V L+ E I+ V +E
Sbjct: 438 ---HNVSLWTVLNDPIGYALPVNNGTAKKLSDFRELISGFIERNVKLSAEEIAAAVVKES 494
Query: 748 SISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTA 807
I +V L + R+V +G + ++N LQ LL + +F +
Sbjct: 495 GIVSV------------LFQDRSV---EG--ISKQEN-----LQELLKGIAEFCEIR--- 529
Query: 808 AKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNE---NSVTLTTIHQSKGLEW 864
+EEG + D++S E Q +D E N VT+ T+H +KGLE+
Sbjct: 530 -REEGAER----------VSLADFLS--EVSLLTDQDNDKEEQANKVTMMTVHAAKGLEF 576
Query: 865 DIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDA 921
VFV E P + + +VEEERRL YVA+TRA + + Y +
Sbjct: 577 RNVFVVGLEEDLFP-----SAMSKDNPRAVEEERRLFYVAITRAEENCVLTYAKSRYRNG 631
Query: 922 NWQLLQPSRFLKEI 935
+ PSRFL++I
Sbjct: 632 QSAMCSPSRFLRDI 645
>gi|313891747|ref|ZP_07825352.1| putative ATP-dependent DNA helicase PcrA [Dialister microaerophilus
UPII 345-E]
gi|313119741|gb|EFR42928.1| putative ATP-dependent DNA helicase PcrA [Dialister microaerophilus
UPII 345-E]
Length = 735
Score = 239 bits (610), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 224/725 (30%), Positives = 355/725 (48%), Gaps = 117/725 (16%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
YL SLN+QQ A + P+LI+AG GSGK GI P ILA+TFT
Sbjct: 4 YLNSLNEQQ-RKAVEHLYGPVLIMAGAGSGKTKALTCRIAHMLNNGIKPEEILAITFTNK 62
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLE-RTSEFLIYGHGQQRRAI 348
AA EM++R+ ++VG A ++ + TFHSF ++ R E TS+F IY ++
Sbjct: 63 AAQEMKERVQNLVG-VIANKIWMYTFHSFGVRFLRREIENGGIYTSKFTIYDSDDSKQ-- 119
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLF-FSMSSFKLCQYNKFE 407
LL+N ++K ++ D +F +N + F S + L NKF
Sbjct: 120 -----LLKN----ILKELNLD------------EKMFQVNQVQFKISAAKNSLIGPNKFR 158
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ SG KI D + E Y+ ++ NALD+ DL+ + ++L
Sbjct: 159 YEN------SGNFYN--GKISD-----VYELYDKYMKQNNALDFDDLLKLTTEMLYE-KN 204
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-RITIVGDDDQSIFSFNGADISGFD 526
+ +++Q +K I++DE+QDT+ QY + + +A + I VGD DQSI+S+ GAD+
Sbjct: 205 IREKWQKRFKYILIDEYQDTNHAQYLMAKYIAGEDCNICAVGDVDQSIYSWRGADLKNII 264
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
F+ D+ + I+L +NYRST+ I+ AA+S+I++N+ R KN+ T N G I +
Sbjct: 265 DFKSDYPQAEIIKLEQNYRSTKTILNAANSVIKNNIDRPS-KNLWTQNDKGDLIQRYKAS 323
Query: 587 NEDAQCAFIIDKIL-EHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHG 644
+E A+ FII+ I EH N CSYG+ AILYR +V + + ++ I + + G
Sbjct: 324 DEHAEADFIINTIKEEHDKNN----CSYGNFAILYRMNAQSRVLEESLVKKGIGYTMVGG 379
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCS 704
FY + +R I+A L+ DD R+ KR I + T++K
Sbjct: 380 TRFYDRAEIRDILAYLKVISNYKDDISLLRIINV--------PKRGIGSV----TVQKLL 427
Query: 705 FISAACDIFGAKISGTFKRSQLTQG--RKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
+ +I + + S L++ +K+ +I KLV SI + + +MV
Sbjct: 428 NFAKDKNISIFETLIMLEESSLSESVQKKIQKFSALIFKLVNE--SIQCDVFELIDMV-- 483
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTK--FTAAKEEGNVDQDKKG 820
L E + L+E ND +S Q ++ + LS F K +G
Sbjct: 484 --LKETEYIA------ALHESNDPKS--QSREENIGELLSVAKDFINEKPDG-------- 525
Query: 821 CINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
L F++ ++ + +++ T + VTL T+H +KGLE+ VF+A +E P
Sbjct: 526 ---TLSDFLEKVALVNDVDNYETVN----DKVTLMTVHSAKGLEFPFVFLAGMDEGIFPG 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQP---SRFLKEIP 936
V ++E +++EEERRL YVA+TRA++KLFI + + L+P SRFL+EIP
Sbjct: 579 VRSL---MDE--SALEEERRLCYVAITRAKEKLFITSSNIRTMYGQLKPFKESRFLEEIP 633
Query: 937 HHLRE 941
L E
Sbjct: 634 GDLIE 638
>gi|302346510|ref|YP_003814808.1| putative ATP-dependent helicase PcrA [Prevotella melaninogenica
ATCC 25845]
gi|302150595|gb|ADK96856.1| putative ATP-dependent helicase PcrA [Prevotella melaninogenica
ATCC 25845]
Length = 851
Score = 239 bits (610), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 219/737 (29%), Positives = 337/737 (45%), Gaps = 109/737 (14%)
Query: 239 DEYSKYLQSLNDQQLEAA--CGDMSTPLLIVAGPGSGK--------------GISPSNIL 282
D+ L +LN+ Q EA C + P L++AG GSGK G+ P NIL
Sbjct: 5 DKEEAILSALNESQREAVEYC---TGPSLVIAGAGSGKTRVLTYKIAYLLNKGLKPWNIL 61
Query: 283 AMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHG 342
A+TFT AA EM++RI I A+ L + TFHS ++ R E + S F IY
Sbjct: 62 ALTFTNKAAREMKERIAQITTAKDAQHLYMGTFHSIFARILRREGEAIGFGSNFTIYDEN 121
Query: 343 QQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQ 402
R I +VK + D T Y AS+ F SM+ L
Sbjct: 122 DSRSLIKS-----------IVKALDLDEKT------YKPASVHN-----FISMAKNHLIT 159
Query: 403 YNKFERDGMDVAK-ASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
+++ D + + S + PA I + Y R NA+D+ D++ + L
Sbjct: 160 ASEYAEDRAAIERDRSARMPAIH---------MIYKAYEARCRQANAMDFDDILLYTFLL 210
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGA 520
E+ ++Y ++ I+VDE+QDT+ Q S++ LA +H RI +VGDD QSI+SF GA
Sbjct: 211 FRDNKEIREKYGQQFEYILVDEYQDTNYAQVSIISQLAETHRRICVVGDDYQSIYSFRGA 270
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
+I F+ F + K +L RNYRST+ IV+AA+SL++HN ++ K+V + + G KI
Sbjct: 271 NIDNILDFKHKFDDAKLFKLERNYRSTQLIVQAANSLMKHNERQIP-KDVFSKEAEGDKI 329
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
+ K C+++ + + +++ N C YG+ AILYR + F+ FR++ IP+
Sbjct: 330 LYKPCYSDREEAMVVANELKRIKRNDD---CDYGNFAILYRTNAQSRSFEDEFRKQGIPY 386
Query: 641 N-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH--IDKI 697
I G++FY++K ++ IIA R D+ +RR+ R I + I KI
Sbjct: 387 KIIGGLSFYQRKEIKDIIAYFRLVSNPNDEEAFRRIINY--------PTRGIGNTTIQKI 438
Query: 698 STIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSV- 756
+ + +S I G + +G ++KL IS I +V
Sbjct: 439 IDCAQRNSVSLWETILNPIQYGL----DVNKG--------TMTKLFAFRTLISGFIKNVA 486
Query: 757 ---ANMVPQKYLLEQRAVVDFDGGKLLNEDNDL--RSVLQYLLADVTDFLSTKFTAAKEE 811
A + ++ + E D G +E DL R L+ ++ + F+ + +EE
Sbjct: 487 LKDAYELGKEIIEESGLSADIRSG---SEPEDLARRENLEEFMSAMQGFVDS----GREE 539
Query: 812 GNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAK 871
G + NV DY+ E + D+ VTL TIH +KGLE+ VFV
Sbjct: 540 GREE-------NVY--LTDYLQEVALYTDADKEDDDTPKVTLMTIHAAKGLEFPTVFVVG 590
Query: 872 ANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQP 928
E P + +EEERRLLYVA+TRA + + + Q+ P
Sbjct: 591 LEENIFP-----SPMSASSKREIEEERRLLYVAITRAERHCILTNAKNRFRYGSMQVDNP 645
Query: 929 SRFLKEIPHHLREVQAE 945
SRFL + L V+ E
Sbjct: 646 SRFLNDFDPALIHVEDE 662
>gi|269798061|ref|YP_003311961.1| ATP-dependent DNA helicase PcrA [Veillonella parvula DSM 2008]
gi|282850288|ref|ZP_06259667.1| ATP-dependent DNA helicase PcrA [Veillonella parvula ATCC 17745]
gi|269094690|gb|ACZ24681.1| ATP-dependent DNA helicase PcrA [Veillonella parvula DSM 2008]
gi|282579781|gb|EFB85185.1| ATP-dependent DNA helicase PcrA [Veillonella parvula ATCC 17745]
Length = 729
Score = 239 bits (610), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 225/743 (30%), Positives = 336/743 (45%), Gaps = 135/743 (18%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
L LN +Q + A PLLI+AG GSGK G++P ILA+TFT A
Sbjct: 5 LTGLNKEQ-QQAVQHTEGPLLILAGAGSGKTKVLTVRIAHLLAQGVNPYEILAITFTNKA 63
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEK-LERTSEFLIYGHGQQRRAII 349
A EM+ R+ +VG A + +STFHSF + R + L S F IY + I
Sbjct: 64 AKEMKSRVEGLVGD-VANRIWLSTFHSFCAKFLRFEIDSFLGYNSNFTIYDTSDSQAVIK 122
Query: 350 EAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
A++ L ++K V G M A++ L F+ + F +
Sbjct: 123 AALKALNLDDKYYPV--------------GAMIAAISDAKNKLLFA---------SDFRK 159
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D + +K+ D + E Y LR NALD+ DL+ +VKLL + V
Sbjct: 160 QARDFYQ---------QKVAD-----VYEYYERELRKNNALDFDDLLLVAVKLLQSNATV 205
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDS 527
+Y ++ +++DE+QDT+ QY L ++LASH + I +VGD DQSI+++ GADI
Sbjct: 206 LDKYSHRFRYVMIDEYQDTNHAQYLLAKLLASHWKNIAVVGDADQSIYAWRGADIQNILD 265
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KD+ N I+L +NYRST+ I++AA+++I +N R + KN+ TD G+KI +
Sbjct: 266 FEKDYPNCTSIKLEQNYRSTKIILDAANAVIDNNEGRPE-KNLWTDKIEGAKIQHFTAQS 324
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
E + AFI D I A YG +AILYR +V + A +R +P+ + G
Sbjct: 325 EHEEAAFIGDTI---AKKHDIHDVPYGDMAILYRTNAQSRVLEEALIKRALPYTMVGGTK 381
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFI 706
FY +K ++ ++A LR DD R+ KR I
Sbjct: 382 FYDRKEIKDVLAYLRVLYNPFDDLSLLRIINV--------PKRSI--------------- 418
Query: 707 SAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLL 766
GA + +G + +TL + +I S+ +K L
Sbjct: 419 -------GATTVAKLQDYAREKGTSLFMTLTQLH-----------LIDSIKGKTKEK--L 458
Query: 767 EQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC----- 821
E+ ++ F L++E D ++VL +L + D T + A EE QD+
Sbjct: 459 EEFGILIF---TLVSEMED-KTVLD-ILESILD--RTGYLAQLEESTDPQDQARAENIGE 511
Query: 822 -INVLKAFIDYISERETEHFRTQR---------HDNENSVTLTTIHQSKGLEWDIVFVAK 871
++V K F D E F Q E VTL T+H +KGLE+ IVF+
Sbjct: 512 LLSVAKDFQDTNPSGTVEDFLEQVALVNDVDSFEQEEAKVTLMTLHAAKGLEFPIVFLCG 571
Query: 872 ANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---P 928
E P H E+ +EEERRL YV +TRA K+L+I + P
Sbjct: 572 LEEGLFP--HSRTLMNPEE---IEEERRLAYVGITRAEKELYISNATTRTVFGRTSSYLP 626
Query: 929 SRFLKEIPHHLRE-VQAEQSVQD 950
SRF+ EIP L + ++A++ V D
Sbjct: 627 SRFIDEIPEELVDGLRAKRKVPD 649
>gi|289769617|ref|ZP_06528995.1| ATP-dependent DNA helicase PcrA [Streptomyces lividans TK24]
gi|289699816|gb|EFD67245.1| ATP-dependent DNA helicase PcrA [Streptomyces lividans TK24]
Length = 831
Score = 239 bits (610), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 216/727 (29%), Positives = 325/727 (44%), Gaps = 109/727 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LN+ Q AA +PLLIVAG GSGK + P ILA+TFT
Sbjct: 70 LEGLNENQ-RAAVVHSGSPLLIVAGAGSGKTRVLTHRIAHLLAERNVHPGQILAITFTNK 128
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A + + TFHS +++ R ++KL TS F IY +R +
Sbjct: 129 AAGEMKERVEQLVGP-RANAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMA 187
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R L+ L KR F SF + + + +
Sbjct: 188 LVCRDLD----LDPKR---------------------------FPPKSFS-AKISNLKNE 215
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+D + + F K + A Y LR NALD+ DLI +V LL FP+V
Sbjct: 216 LIDEEDFAAQAADGFEKTLAQAYAM----YQSRLREANALDFDDLIMTTVNLLRAFPDVA 271
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILAS----------------HNRITIVGDDDQS 513
+ Y+ ++ ++VDE+QDT+ QY+L++ L + +VGD DQS
Sbjct: 272 EHYRRRFRHVLVDEYQDTNHAQYALVRELVGVPSEHPVDVPPEAEVPPAELCVVGDADQS 331
Query: 514 IFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTD 573
I++F GA I F +D+ + I L +NYRST+ I+ AA+++I+ N R + KN+ T+
Sbjct: 332 IYAFRGATIRNILQFEEDYPDATTILLEQNYRSTQTILSAANAVIERNESR-RPKNLWTN 390
Query: 574 NSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
G++I E + F+ D+I G A G +A+ YR +VF+ F
Sbjct: 391 QGSGAQITGYVADTEHDEAQFVADEIDRLTDAGEAKA---GDVAVFYRTNAQSRVFEEVF 447
Query: 634 RERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID 692
+P+ + GV FY +K VR ++A LR D P RR+ + ++ R
Sbjct: 448 IRTGLPYKVVGGVRFYERKEVRDVLAYLRVLANPEDSVPLRRILN---VPKRGIGDRAEA 504
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV 752
ID +S K SF A + A G RS R L +E + +V + V
Sbjct: 505 MIDALSQREKISFPQALRRVDEAY--GMAARSANAVKRFNTL-MEDLRTIVESGAGPATV 561
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
+ ++ YL E +A D +D LQ L A +F + A EE
Sbjct: 562 LEAILERT--GYLAELQASTD-------PQDETRIENLQELAAVALEFEQER--AEGEEA 610
Query: 813 NVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKA 872
D + L A D I + E D + VTL T+H +KGLE+ +VF+
Sbjct: 611 GTLADFLEKV-ALVADSDQIPDEE---------DGDGVVTLMTLHTAKGLEFPVVFLTGM 660
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPS 929
+ P + A +EEERRL YV +TRAR++L++ + + W PS
Sbjct: 661 EDGVFPHMRALGQA-----KELEEERRLAYVGITRARERLYLTRSTLRSAWGQPSYNPPS 715
Query: 930 RFLKEIP 936
RFL+EIP
Sbjct: 716 RFLEEIP 722
>gi|335038777|ref|ZP_08531985.1| ATP-dependent DNA helicase PcrA [Caldalkalibacillus thermarum
TA2.A1]
gi|334181338|gb|EGL83895.1| ATP-dependent DNA helicase PcrA [Caldalkalibacillus thermarum
TA2.A1]
Length = 741
Score = 239 bits (610), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 224/730 (30%), Positives = 341/730 (46%), Gaps = 124/730 (16%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFT 287
+ L LN+QQ +A P+LI+AG GSGK GI+P NI+A+TFT
Sbjct: 8 RLLAGLNEQQRQAVL-TTEGPVLIMAGAGSGKTRVLTHRIAYLLAEKGIAPYNIMAITFT 66
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM++R+ +VG A+++ ISTFHS +++ R +++ F I Q
Sbjct: 67 NKAAREMKERVAHLVG-PVAEDIWISTFHSMCVRILRRDIDRIGYNRHFSILDTQDQLAV 125
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
I E + K ++ D D RA L ++A
Sbjct: 126 IKECM-----------KELNIDSKKFDP-----RAVLGTISAY----------------- 152
Query: 408 RDGMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
K KTP + ++ D+I A + E Y LRS +ALD+ DLI +V L
Sbjct: 153 -------KNELKTPEQVSQLAGNYYDQIVATVYEKYQQTLRSNHALDFDDLIMQTVHLFQ 205
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADI 522
P+V YQ ++ I VDE+QDT+ QY L+++LA H I +VGD DQSI+ + GADI
Sbjct: 206 QVPDVLDYYQRKFQYIHVDEYQDTNRAQYLLVRMLADFHRNICVVGDSDQSIYKWRGADI 265
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
S SF +D+ + I+L +NYRST+ I+EAA+ +I+HNV+R + K + T N GS+I
Sbjct: 266 SIILSFEEDYQDATVIKLEQNYRSTKRILEAANEVIKHNVQRKE-KKLWTANEQGSRIKY 324
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN- 641
NE + F+ +I E G +Y AILYR +V + F + IP+
Sbjct: 325 YRAENEHDEAYFVTKQIQEAVKAGR----NYSDFAILYRTNAQSRVLEEVFVKANIPYQM 380
Query: 642 IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH--IDKIST 699
+ G+ FY +K ++ I+A LR DD +RR+ KR I +DK+++
Sbjct: 381 VGGIKFYERKEIKDILAYLRLIANPNDDISFRRIVNV--------PKRGIGQASLDKLAS 432
Query: 700 I---RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREP--SISAVIT 754
+ S A ++ G KR+ R E+I R+ S+S +
Sbjct: 433 YAAEKNMSLFEALAEV---DFIGLNKRAANQLAR----FYELIHNWSRQVEYLSVSELTG 485
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
V K L Q ++ G L +V +FLS T E+ N
Sbjct: 486 DVLEKTGYKAALLQEGTLEAKGR----------------LENVEEFLSV--TQEFEKKNE 527
Query: 815 DQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
D+ L AF+D ++ ++ + N+V L T+H +KGLE+ +VF+
Sbjct: 528 DKS-------LPAFLDEVA-LVSDIDQVDEDQEGNAVMLMTLHAAKGLEFPVVFLVGMEN 579
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDA--NWQLLQP-SRF 931
P A++E +EEERRL YV +TRA ++L++ M ++ P S F
Sbjct: 580 NLFP---HSRSALDE--EELEEERRLAYVGITRAEEELYLTNAKMRTIFGQTVMNPESCF 634
Query: 932 LKEIPHHLRE 941
++EIP HL E
Sbjct: 635 IEEIPDHLLE 644
>gi|410099487|ref|ZP_11294458.1| hypothetical protein HMPREF1076_03636 [Parabacteroides goldsteinii
CL02T12C30]
gi|409218958|gb|EKN11924.1| hypothetical protein HMPREF1076_03636 [Parabacteroides goldsteinii
CL02T12C30]
Length = 778
Score = 239 bits (610), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 220/746 (29%), Positives = 349/746 (46%), Gaps = 131/746 (17%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTT 288
+YL LN+ Q EA + P L++AG GSGK G++P +ILA+TFT
Sbjct: 3 EYLNKLNESQREAVEYN-EGPSLVIAGAGSGKTRVLTYKIAYLVHLGLAPQSILALTFTN 61
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQR--- 345
AA EM++RI +I G TA+ L + TFHS ++ R AE + S F IY +
Sbjct: 62 KAAREMKERIAAITGDQTARRLWMGTFHSIFSRILRYEAEHIGYPSNFTIYDTTDSKSLL 121
Query: 346 RAIIEAVRLLENEKI----LVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSM--SSFK 399
+AII+ ++L ++K+ +V RIS NA++ + S +
Sbjct: 122 KAIIKEMQL--DDKVYRLGMVQSRISN-----------------AKNALVTWKAYEQSKE 162
Query: 400 LCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSV 459
L Q++ K P + I + Y + A+D+ DL+ +
Sbjct: 163 LMQHD-----------IDSKVP---------LLREIYKRYQNRCQQAGAMDFDDLLLQTN 202
Query: 460 KLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFN 518
L P+V ++Y+ ++ ++VDE+QDT+ Q+ ++Q L H RI +VGDD QSI+SF
Sbjct: 203 ILFRDHPQVLEKYRSFFQFVLVDEYQDTNFAQHLIVQRLCEQHRRICVVGDDAQSIYSFR 262
Query: 519 GADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGS 578
GA+I F+ + + +L RNYRST+ IV AA+SLI N ++ KNV ++ GS
Sbjct: 263 GANIDNILQFKNQYPGCRIFKLERNYRSTQNIVNAANSLIHKNKEQIH-KNVYSEKEEGS 321
Query: 579 KIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKI 638
K+ I +++ + + I E Y AILYR ++ + A R+R I
Sbjct: 322 KVRISASYSDYEEGYAVASAINELRLRKD---YDYADFAILYRTNAQSRILEEALRKRGI 378
Query: 639 PFNIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKI 697
P+ I+ G++FY++K ++ II+ LR + D+ ++RV + ++ + K
Sbjct: 379 PYKIYGGLSFYQRKEIKDIISYLRLIVNPHDEEAFKRVIN---YPSRGIGDTTVNKVIKA 435
Query: 698 STIRKCSF---ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+T S + A D SGT K+ LT R EMI + + + +SA
Sbjct: 436 ATENNVSLWTVLDAPIDYALPINSGTAKK--LTDFR------EMIERFIEQNTRLSAE-- 485
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKL--LNEDNDLRSV-----LQYLLADVTDFLSTKFTA 807
E A+V D G + L +D + + LQ LL + +F +
Sbjct: 486 ------------EMAAIVVKDSGIVSSLFQDRSVEGISKQENLQELLKGIAEFCELR--- 530
Query: 808 AKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNE---NSVTLTTIHQSKGLEW 864
+EEG V+Q + D++S E Q +D + N VT+ T+H +KGLE+
Sbjct: 531 -REEG-VEQ---------VSLADFLS--EVSLLTDQDNDKDEQANKVTMMTVHAAKGLEF 577
Query: 865 DIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDA 921
VFV E P + + +VEEERRL YVA+TRA + + Y +
Sbjct: 578 KNVFVVGLEEELFP-----SSMSKDNPRAVEEERRLFYVAITRAEENCVLTYAKSRFRNG 632
Query: 922 NWQLLQPSRFLKEIPHHLREVQAEQS 947
+ PSRFLK+I +V A+ S
Sbjct: 633 QSAMCSPSRFLKDIDVRFLDVPADSS 658
>gi|183984523|ref|YP_001852814.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium marinum M]
gi|183177849|gb|ACC42959.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium marinum M]
Length = 769
Score = 239 bits (610), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 208/733 (28%), Positives = 338/733 (46%), Gaps = 101/733 (13%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFT 287
+ L+ LN QQ +A + S PLLIVAG GSGK G+ ILA+TFT
Sbjct: 10 QLLEGLNPQQRQAVVHEGS-PLLIVAGAGSGKTAVLTRRIAYLIAARGVGVGQILAITFT 68
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRR 346
AA+EMR+R+ S+VG AK + +STFHS +++ R+ A ++ S F IY RR
Sbjct: 69 NKAAAEMRERVVSLVG-GRAKYMWVSTFHSTCVRILRNQAALIKGLNSNFSIYDADDSRR 127
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
+ +++ + L +KR S +L A + N ++ + L +
Sbjct: 128 LL----QMIGRDMGLDIKRYSPRLLAN--------AISNLKNELIDPDRAVSDLSE---- 171
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
D D+A+ AE+++ LR+ NALD+ DLI +V +L FP
Sbjct: 172 --DSDDLARTVASVYAEYQRR---------------LRAANALDFDDLIGETVGILQAFP 214
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-----------RITIVGDDDQSIF 515
++ Y+ ++ ++VDE+QDT+ QY L++ L ++ +VGD DQSI+
Sbjct: 215 DIAGHYRRRFRHVLVDEYQDTNHAQYVLVRELVGRGSEDEPGDVPPAQLCVVGDADQSIY 274
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I + F +D+ + I L +NYRST+ I+ AA+S+I N R + K + TD
Sbjct: 275 AFRGATIRNIEDFERDYPDATTILLEQNYRSTQNILSAANSVISRNSGRRE-KRLWTDAG 333
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G I+ NE + F+ ++I A +Y +A+ YR S + + F
Sbjct: 334 AGELIVGYVADNEHDEARFVAEEIDALAERDE---ITYNDVAVFYRTNNSSRSLEEVFIR 390
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
IP+ + GV FY +K +R IIA LR D RR+ ++ + D
Sbjct: 391 AGIPYKVVGGVRFYERKEIRDIIAYLRVLDNPGDAVSMRRILNT-------PRRGIGDRA 443
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+ + + + D A G + + +E++ +L R S +
Sbjct: 444 EACVAVYAENTGAGFSDALVAAAEGKVPMLNSRAEKAIAGFVELLDELRGRLDSSEGDLG 503
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
+ V ++ + D +L DN L L++ +F + AA+ E
Sbjct: 504 ELVEAVLERTGYRRELESSTDPQELARLDN-----LNELVSVAHEFSTDLANAAEPE--P 556
Query: 815 DQDKKGCINVLKAFIDYIS-----ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFV 869
D + +L AF++ +S + EH VTL T+H +KGLE+ +VFV
Sbjct: 557 DAEDVPDTGMLAAFLERVSLVADTDDIPEH-------GAGVVTLMTLHTAKGLEFPVVFV 609
Query: 870 AKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW--QLLQ 927
+ P + + T + EERRL YV +TRAR++L++ ++ ++W +L
Sbjct: 610 TGWEDGMFPHMRALDDP-----TELSEERRLAYVGITRARQRLYLSRAIVRSSWGQPMLN 664
Query: 928 P-SRFLKEIPHHL 939
P SRFL+EIP L
Sbjct: 665 PESRFLREIPQEL 677
>gi|21223175|ref|NP_628954.1| ATP-dependent DNA helicase II [Streptomyces coelicolor A3(2)]
gi|8218198|emb|CAB92660.1| putative ATP-dependent DNA helicase II [Streptomyces coelicolor
A3(2)]
Length = 831
Score = 239 bits (610), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 216/727 (29%), Positives = 325/727 (44%), Gaps = 109/727 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LN+ Q AA +PLLIVAG GSGK + P ILA+TFT
Sbjct: 70 LEGLNENQ-RAAVVHSGSPLLIVAGAGSGKTRVLTHRIAHLLAERNVHPGQILAITFTNK 128
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A + + TFHS +++ R ++KL TS F IY +R +
Sbjct: 129 AAGEMKERVEQLVGP-RANAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMA 187
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R L+ L KR F SF + + + +
Sbjct: 188 LVCRDLD----LDPKR---------------------------FPPKSFS-AKISNLKNE 215
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+D + + F K + A Y LR NALD+ DLI +V LL FP+V
Sbjct: 216 LIDEEDFAAQAADGFEKTLAQAYAM----YQSRLREANALDFDDLIMTTVNLLRAFPDVA 271
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILAS----------------HNRITIVGDDDQS 513
+ Y+ ++ ++VDE+QDT+ QY+L++ L + +VGD DQS
Sbjct: 272 EHYRRRFRHVLVDEYQDTNHAQYALVRELVGVPSEHPVDVPPEAEVPPAELCVVGDADQS 331
Query: 514 IFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTD 573
I++F GA I F +D+ + I L +NYRST+ I+ AA+++I+ N R + KN+ T+
Sbjct: 332 IYAFRGATIRNILQFEEDYPDATTILLEQNYRSTQTILSAANAVIERNESR-RPKNLWTN 390
Query: 574 NSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
G++I E + F+ D+I G A G +A+ YR +VF+ F
Sbjct: 391 QGSGAQITGYVADTEHDEAQFVADEIDRLTDAGEAKA---GDVAVFYRTNAQSRVFEEVF 447
Query: 634 RERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID 692
+P+ + GV FY +K VR ++A LR D P RR+ + ++ R
Sbjct: 448 IRTGLPYKVVGGVRFYERKEVRDVLAYLRVLANPEDSVPLRRILN---VPKRGIGDRAEA 504
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV 752
ID +S K SF A + A G RS R L +E + +V + V
Sbjct: 505 MIDALSQREKISFPQALRRVDEAY--GMAARSANAVKRFNTL-MEDLRTIVESGAGPATV 561
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
+ ++ YL E +A D +D LQ L A +F + A EE
Sbjct: 562 LEAILERT--GYLAELQASTD-------PQDETRIENLQELAAVALEFEQER--AEGEEA 610
Query: 813 NVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKA 872
D + L A D I + E D + VTL T+H +KGLE+ +VF+
Sbjct: 611 GTLADFLEKV-ALVADSDQIPDEE---------DGDGVVTLMTLHTAKGLEFPVVFLTGM 660
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPS 929
+ P + A +EEERRL YV +TRAR++L++ + + W PS
Sbjct: 661 EDGVFPHMRALGQA-----KELEEERRLAYVGITRARERLYLTRSTLRSAWGQPSYNPPS 715
Query: 930 RFLKEIP 936
RFL+EIP
Sbjct: 716 RFLEEIP 722
>gi|414161559|ref|ZP_11417818.1| ATP-dependent DNA helicase pcrA [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410875996|gb|EKS23910.1| ATP-dependent DNA helicase pcrA [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 731
Score = 239 bits (610), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 205/724 (28%), Positives = 338/724 (46%), Gaps = 118/724 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L ++N +Q EA PLLI+AG GSGK G+SP N+LA+TFT
Sbjct: 5 LDNMNTEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKGVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ ++I
Sbjct: 64 AAREMKERVEKLVGEE-AQVIWMSTFHSMCVRILRRDADRIGIERNFTILDPTDQK-SVI 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ V EN + KR M ++ A M N +
Sbjct: 122 KDVLKTEN---IDSKRYDPRM--------FLSAISNMKNEL------------------- 151
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
K E ++ A + Y L ALD+ DLI ++ L P+V
Sbjct: 152 -----KTVEDAEIEATDFMSDMVARVYAGYQRQLSRNEALDFDDLIMTTINLFKRVPDVL 206
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ+ ++ I VDE+QDT+ QY+L+++LA + +VGD DQSI+ + GADI SF
Sbjct: 207 EYYQNKFQYIHVDEYQDTNRAQYTLVKLLADKFKNLCVVGDSDQSIYGWRGADIQNILSF 266
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
+D+ N + I L +NYRST+ I+ AA+ +I++N +R + K + T N G KI + +E
Sbjct: 267 EEDYPNARTIFLEQNYRSTKVILNAANEVIKNNTER-KPKGLWTANQEGKKINYYQAQSE 325
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ +++ +I+ S+ IAILYR +V + F + IP+ + G F
Sbjct: 326 SDEAQYVVKEIMRQQRENNK---SFNDIAILYRTNAQSRVLEETFMKSNIPYTMVGGHKF 382
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIRKCSF 705
Y +K + +++ LR DD +R+ KR I ++KI + +
Sbjct: 383 YDRKEINDLLSYLRLIANSNDDISLQRIINV--------PKRGIGPSSVEKIQAYARQND 434
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREP--SISAVITSVANMVPQK 763
+S + A G K+ ++ + +IS L++ + +S ++ V N K
Sbjct: 435 LSMFDALAEADFIGLTKKVT----KQAIDFYTLISNLIQEQEFLEVSEIVEEVLNKSGYK 490
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
+LE+ + + RS L+ ++ +F+S K N +++ IN
Sbjct: 491 EMLERDQTL------------EARSRLE----NIEEFMSVPMDYEK---NTPLEEQSLIN 531
Query: 824 VLK-----AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
L A ID + D EN VTL T+H +KGLE+ +VF+ E+ P
Sbjct: 532 FLTDLSLVADIDEV-------------DIENGVTLMTMHSAKGLEFPVVFIMGMEESIFP 578
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
+ +++ +EEERR+ YVA+TRA ++L++ + + Q SRFLKEI
Sbjct: 579 HIRSI---LSDDDHEMEEERRICYVAITRAEEELYLTHATSRTLFGKTQSNSASRFLKEI 635
Query: 936 PHHL 939
P L
Sbjct: 636 PEDL 639
>gi|303231497|ref|ZP_07318227.1| ATP-dependent DNA helicase PcrA [Veillonella atypica
ACS-049-V-Sch6]
gi|302513840|gb|EFL55852.1| ATP-dependent DNA helicase PcrA [Veillonella atypica
ACS-049-V-Sch6]
Length = 729
Score = 239 bits (610), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 226/744 (30%), Positives = 339/744 (45%), Gaps = 137/744 (18%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
L LN +Q + A PLLI+AG GSGK G++P ILA+TFT A
Sbjct: 5 LDGLNREQ-QQAVQHTEGPLLILAGAGSGKTKVLTVRIAYLLAQGVNPYEILAITFTNKA 63
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEK-LERTSEFLIYGHGQQRRAII 349
A EM+ R+ +VG A + +STFHSF + R + L S F IY + I
Sbjct: 64 AKEMKSRVEGLVGD-VANRIWLSTFHSFCAKFLRFELDNFLGYNSNFTIYDTSDSQVVIK 122
Query: 350 EAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
A++ L ++K V G M +++ L F+ Y K R
Sbjct: 123 AALKALNLDDKYYPV--------------GAMISAISDAKNKLMFA------SDYRKQAR 162
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D +K+ D + E Y LR NALD+ DL+ +VKLL + V
Sbjct: 163 DFYQ------------QKVAD-----VYEYYERELRKNNALDFDDLLLVAVKLLQSNAAV 205
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDS 527
++Y +K +++DE+QDT+ QY L +L+SH + I +VGD DQSI+++ GADI
Sbjct: 206 LEKYSKRFKYVMIDEYQDTNHAQYLLAYLLSSHWKNIAVVGDADQSIYAWRGADIQNILD 265
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KD+ N I+L +NYRST+ I++AA+++I +N R + KN+ TD G+KI +
Sbjct: 266 FEKDYPNCTSIKLEQNYRSTKIILDAANAVIDNNEGRPE-KNLWTDKVEGAKIQHFTAQS 324
Query: 588 EDAQCAFIIDKIL-EHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
E + AFI D I+ +H +G YG +AILYR +V + A +R +P+ + G
Sbjct: 325 EHEEAAFIGDTIVKKHDIHG----VPYGDMAILYRTNAQSRVLEEALIKRALPYTMVGGT 380
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSF 705
FY +K ++ ++A LR DD R+ KR I
Sbjct: 381 KFYDRKEIKDVLAYLRVLYNPFDDLSLLRIINV--------PKRSI-------------- 418
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYL 765
GA + G + +TL + ++ ++ +K
Sbjct: 419 --------GATTVSKLQDYARENGTSLFMTLTQLH-----------LVDTIKGKTKEK-- 457
Query: 766 LEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC---- 821
LE+ ++ F L+ E +D +SVL L A + D T + A EE QD+
Sbjct: 458 LEEFGILIF---TLVAEMDD-KSVLDILEA-ILD--RTGYLAQLEESTDPQDQARAENIG 510
Query: 822 --INVLKAFIDYISERETEHFRTQR---------HDNENSVTLTTIHQSKGLEWDIVFVA 870
++V K F D E F Q E+ VTL T+H +KGLE+ IVF+
Sbjct: 511 ELLSVAKDFQDTNPTGTVEDFLEQVALVNDVDSFEQEESKVTLMTLHAAKGLEFPIVFLG 570
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ--- 927
E P H E+ +EEERRL YV +TRA K+L+I +
Sbjct: 571 GLEEGLFP--HSRTLMNPEE---IEEERRLAYVGITRAEKELYISNATTRTVFGRTSSYL 625
Query: 928 PSRFLKEIPHHLRE-VQAEQSVQD 950
PSRF+ EIP L + ++A++ + D
Sbjct: 626 PSRFIDEIPAELVDSLRAKRRIPD 649
>gi|407476329|ref|YP_006790206.1| ATP-dependent DNA helicase pcrA [Exiguobacterium antarcticum B7]
gi|407060408|gb|AFS69598.1| ATP-dependent DNA helicase pcrA [Exiguobacterium antarcticum B7]
Length = 741
Score = 239 bits (610), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 223/755 (29%), Positives = 346/755 (45%), Gaps = 133/755 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
+ LN +Q +A PLLI+AG GSGK ++P NILA+TFT
Sbjct: 9 VSGLNPEQAKA-VKHTDGPLLIMAGAGSGKTRVLTHRVAYLMAAKQVAPWNILAITFTNK 67
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMRDRI +VG A ++ +STFHS +++ R EK+ F I Q+ A+
Sbjct: 68 AAREMRDRISRLVG-GVANDIWVSTFHSMCVRMLRRDIEKIGYNRNFTILDSSDQQSALK 126
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF--- 406
LV+K + D D SM S Q N+
Sbjct: 127 -----------LVLKEQNLDPKKWDPR-----------------SMLSIISSQKNELRSA 158
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
E V KT AE I + Y ILR NALD+ DLI + +L P
Sbjct: 159 EFYASIVTNPYEKTVAE-----------IYKGYEAILRRNNALDFDDLIGKTTELFKQNP 207
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGF 525
+V YQ ++ I VDE+QDT+ QY L+ +LA+ H + +VGD DQSI+ + GADI+
Sbjct: 208 DVLAFYQRKFQYIHVDEYQDTNKAQYDLVNLLAAAHQNLCVVGDSDQSIYRWRGADIANI 267
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
SF +D+ K I L +NYRS++ I++AA+ +I++N R K + T+N+ G K+I+
Sbjct: 268 LSFEEDYPTAKVIMLEQNYRSSKRILDAANHVIKNNSTRKD-KKLWTENAEGEKLIVHTA 326
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHG 644
NE + +I+ +I G IAILYR + + + +P+ I G
Sbjct: 327 ENEREEAFYIVQEIRNALRYG----MKLNDIAILYRTNAQSRAIEETLLKSNVPYKMIGG 382
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKIST 699
FY +K ++ ++A LR +D + R+ E KR ID + +
Sbjct: 383 TKFYDRKEIKDVLAYLRLISNPNEDLSFARIVN--------EPKRGIGATTIDKLRDFAD 434
Query: 700 IRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANM 759
++ S + A DI + I+ ++L+ R ++L L+ + + + S+S ++ V
Sbjct: 435 LQGVSLMEAIRDIELSTIAPK-TAAKLSDFRTMVLGLQQMQEFI----SLSELVEEV--- 486
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
LE+ ++L ED L + Q L ++ +F++ KE + D +++
Sbjct: 487 ------LEKSGY-----RQVLKEDKTLEA--QSRLENINEFITVAQNFEKETADSDPEEQ 533
Query: 820 GCINVLK-----AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
I L A +D + E D VTL T+H +KGLE+ IVF+ E
Sbjct: 534 TIIAFLTDLTLVADVDSLDE----------SDPGEQVTLMTLHSAKGLEFPIVFLIGMEE 583
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQ 927
P + +EEERRL YV +TRA K+L++ LY +AN +
Sbjct: 584 GLFPHSRSL-----QDEDEMEEERRLAYVGITRAEKRLYLSHARMRSLYGRTNANLE--- 635
Query: 928 PSRFLKEIPHHLREVQAEQSVQDQHEN--IPEGTA 960
SRFL E+P + E ++ E+ +P+G A
Sbjct: 636 -SRFLAELPEEVLERTGKKPKPLPWEDRPVPQGKA 669
>gi|406981731|gb|EKE03143.1| hypothetical protein ACD_20C00249G0002 [uncultured bacterium]
Length = 706
Score = 239 bits (609), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 209/715 (29%), Positives = 342/715 (47%), Gaps = 122/715 (17%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASE 293
LN Q EA + PLL++AG GSGK G+ P+ ILA+TFT AA+E
Sbjct: 6 LNQNQKEA-IDHIEGPLLVLAGAGSGKTRVVTMKIAKLIEIGVDPNAILAVTFTNKAANE 64
Query: 294 MRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVR 353
M RI K T K + TFHS ++ R L ++ F IY + I E ++
Sbjct: 65 MSQRIK----KLTFKNIVACTFHSLGAKILRESIHHLGYSNNFTIYDEEDSLKLIDECLK 120
Query: 354 LL--ENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
L + EK L K F Y +++ + + +
Sbjct: 121 SLNLKEEKNLQKK------------FRYKISTI----------------------KNENI 146
Query: 412 DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQE 471
D+ + + + D+ +A+ + Y L+S N++D+ DL+ +++L P+V
Sbjct: 147 DIDDINSCS------LLDKNESAVFKMYQNQLKSFNSVDFDDLLYLTIRLFQKNPQVLSH 200
Query: 472 YQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDSFRK 530
YQ+ W I+VDE+QDT+ QY L+++L+ N+ + +VGD DQSI+SF GA +F K
Sbjct: 201 YQNKWSFILVDEYQDTNYAQYLLIKMLSLKNKNLCVVGDPDQSIYSFRGAKYQNILNFDK 260
Query: 531 DFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDA 590
DF + K I+L +NYRST I+ AA+ +I++N R + KN+ ++ G KI I + +E
Sbjct: 261 DFQDAKIIKLEKNYRSTSTILNAANLIIKNNKNRFE-KNLYSELEDGEKIQIYKADSEQM 319
Query: 591 QCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG-VAFYR 649
+ AFII+KI ++ + + IAI YR +VF+ + IP+ I+G ++FY+
Sbjct: 320 EAAFIIEKIKKNKN------INLDEIAIFYRTNFQSRVFEDILLSQNIPYIIYGGISFYQ 373
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAA 709
+K ++ I+A L+ + D + R F K K ++ + +S + I+
Sbjct: 374 RKEIKDILAFLKLLVSDSDFMSFVRTINTF---SKGFGKVTLNKLFFLSEKTQIPIITLL 430
Query: 710 CDIFGAKISGTFKRSQLTQGRKVLLT--LEMISKL--VRREPSISAVITSVANMVPQKYL 765
I ++ +L +K+ L L+ I+ L +++ SI +I+ V + +
Sbjct: 431 YQILTN--PNRYQDVKLNNHQKLNLQEYLKNINALKNMQKNESIDDLISEVLSKMNYLNY 488
Query: 766 LEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVL 825
L+Q D N ++ D L K + +EE + N L
Sbjct: 489 LKQ------DPQSYENRKENI------------DELMLKASQWQEENS---------NNL 521
Query: 826 KAFIDYISERETEHFRTQRHDN--ENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
+AF++ +S T + +N ++SV L T+H SKGLE++ VF++ E P +
Sbjct: 522 EAFLEELS------LTTSKTENPQQSSVKLMTLHNSKGLEFECVFISGLEEDLFPHANCK 575
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSRFLKEI 935
N +EEERRL YV MTRA+K L+I + W +L PSRFLKE+
Sbjct: 576 NSI-----EDIEEERRLFYVGMTRAKKYLYITHAQYRFIWGGVKLSTPSRFLKEL 625
>gi|404423451|ref|ZP_11005096.1| ATP-dependent DNA helicase PcrA [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
gi|403654147|gb|EJZ09085.1| ATP-dependent DNA helicase PcrA [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
Length = 775
Score = 239 bits (609), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 215/741 (29%), Positives = 336/741 (45%), Gaps = 93/741 (12%)
Query: 232 IKTQNMPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------I 276
+ T ++ E + L LN QQ +A + S PLLIVAG GSGK +
Sbjct: 1 MTTSSVASEIDQLLDGLNPQQRQAVLHEGS-PLLIVAGAGSGKTAVLTRRIAYLLAAREV 59
Query: 277 SPSNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSE 335
ILA+TFT AA+EMR+R+ +VG A+ + +STFHS +++ R+ A L S
Sbjct: 60 GVGQILAITFTNKAAAEMRERVVGLVGP-RARNMWVSTFHSTCVRILRNQASLLPGLNSN 118
Query: 336 FLIYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSM 395
F IY RR ++ ++ + L KR S +L + + L
Sbjct: 119 FSIYDSDDSRRLLM----MIGKDMGLDTKRYSPRLLAN---------GISNLKNELIGPE 165
Query: 396 SSFKLCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLI 455
+ E G+ +A+ G+ Y LR+ NALD+ DLI
Sbjct: 166 QAAAEASEAAEEMAGV-IAQVYGE-------------------YQRRLRAANALDFDDLI 205
Query: 456 SCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN----------RIT 505
+V +L FP++ Q Y+ ++ I+VDE+QDT+ QY L++ L H+ +
Sbjct: 206 GETVGILQAFPQIAQYYRRRFRHILVDEYQDTNHAQYVLVRELVGHHLDENDGVGPSELC 265
Query: 506 IVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRC 565
+VGD DQSI++F GA I + F +D+ + I L +NYRST+ I+ AA+S+I N R
Sbjct: 266 VVGDADQSIYAFRGATIRNIEDFERDYPDATTILLEQNYRSTQTILNAANSVIARNTGRR 325
Query: 566 QLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHA-SNGPASICSYGSIAILYRRQV 624
+ K + T+ G I+ NE + F+ ++I A S G YG +A+ YR
Sbjct: 326 E-KRLWTEEGEGELIVGYVADNEHDEARFVAEEIDALADSEG----LKYGDVAVFYRTNN 380
Query: 625 SGKVFQTAFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLE 683
S + + F IP+ + GV FY ++ +R I+A LR D RR+
Sbjct: 381 SSRALEEVFIRAGIPYKVVGGVRFYERREIRDIVAYLRVLDNPGDSVSMRRILNT----- 435
Query: 684 KEEKKRVIDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKL- 742
++ + D + + + + D A G + + +EM+ L
Sbjct: 436 --PRRGIGDRAEACVAVYAENTGANFNDALQAAAEGRVPMLNSRSEKAIASFVEMLDSLR 493
Query: 743 VRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLS 802
+ + + ++ +V Y E A D L+ N+L SV TD +
Sbjct: 494 AKLDDELGDLVEAVLERT--GYRRELEASSDPQDLARLDNLNELVSVAHEF---STDLAN 548
Query: 803 TKFTAAKEEGN-VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKG 861
+ A + EG VD+D VL F++ +S D VT+ T+H +KG
Sbjct: 549 ARALAEQGEGEPVDEDIPDT-GVLAQFLERVS--LVADADEIPEDGAGVVTMMTLHTAKG 605
Query: 862 LEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDA 921
LE+ VFV + P + G NE + EERRL YV +TRARK+L++ + +
Sbjct: 606 LEFPAVFVTGWEDGMFPHMRAL-GDPNE----LSEERRLAYVGITRARKRLYLSRAKVRS 660
Query: 922 NW--QLLQP-SRFLKEIPHHL 939
+W +L P SRFL+EIP L
Sbjct: 661 SWGQPMLNPESRFLREIPEEL 681
>gi|150015241|ref|YP_001307495.1| UvrD/REP helicase [Clostridium beijerinckii NCIMB 8052]
gi|149901706|gb|ABR32539.1| UvrD/REP helicase [Clostridium beijerinckii NCIMB 8052]
Length = 755
Score = 238 bits (608), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 209/698 (29%), Positives = 339/698 (48%), Gaps = 126/698 (18%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q E A + +LI+AG GSGK I+P +ILA+TFT AA
Sbjct: 7 LNKEQYEGATT-IDGQVLILAGAGSGKTRVLTHRMAHMIEDLDIAPYSILAITFTNKAAK 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM+DR+ +++G+ A+ + ISTFHS +++ R +K+ S F IY Q+ + E +
Sbjct: 66 EMKDRVKALIGE-RAENMWISTFHSTCVRILRREIDKIGYKSSFTIYDSSDQKTLVKECM 124
Query: 353 RLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
+ L N+K + + I G G + + S+ SF L
Sbjct: 125 KTLNINDKDITEQEIM-------GKIGKAKDRMQ--------SVRSFML----------- 158
Query: 412 DVAKASGKTPAEFR--KIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ A FR KI D + E Y L+ NALD+ DLI +V+L P V
Sbjct: 159 -------ENEANFREKKIAD-----VYEMYQKRLKENNALDFDDLIFKTVELFKNNPGVL 206
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ+ +K I+VDE+QDT+ QY L+++LAS + I +VGDDDQ I+ + GADI F
Sbjct: 207 EFYQNKFKYIMVDEYQDTNGAQYELVKLLASKYKNICVVGDDDQCIYQWRGADIQNILDF 266
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K I+L +NYRS I+ AA+ +I +N R + K ++T+ G+KI I + +
Sbjct: 267 EKDYPGAKVIKLEQNYRSKGNILSAANVVIVNNANR-KSKVLRTEQEPGNKIKIYRAYAD 325
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVAF 647
+ F+ +IL+ + +Y AILYR ++F+ +FR + +P+ I G F
Sbjct: 326 SDEGDFVSKQILDIKNKEDK---NYNDFAILYRTNAQSRIFEESFRRKGVPYKIVGGTRF 382
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y +K ++ ++A L+ + DD RR+ KR I +T+ K +
Sbjct: 383 YDRKEIKDVLAYLKVIVNPQDDISIRRIINV--------PKRSIGD----ATVAKVQEFA 430
Query: 708 AA--CDIFGAKISGTFKRSQLTQGRKV-LLTLEMISKLVRREPSISAV--ITSVANMVPQ 762
++ D++ A L + R + LT +S + EP ++ + ++ VP
Sbjct: 431 SSFEFDLWDA----------LAEVRSIPTLTSRNVSTI---EPFVALMENFMELSETVPV 477
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSV-----LQYLLADVTDFLSTKFTAAKEEGNVDQD 817
L+E + D K L E N++ L+ L++D DF E+ N D+
Sbjct: 478 SVLIES-ILKDTGYLKQLQESNEIEDKSRIENLKELVSDAADF---------EKNNEDKS 527
Query: 818 KKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
L A+++ +S ++T+ + +++V L TIH +KGLE+ +VF+
Sbjct: 528 -------LSAYLERVSLVQDTDKI----EEEDDAVVLMTIHSAKGLEFPVVFMVGMENGI 576
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI 914
P F EK + +EE RRL YV +TRA++ LF+
Sbjct: 577 FPGNASF-----EKESEMEESRRLCYVGITRAKQTLFM 609
>gi|431793260|ref|YP_007220165.1| ATP-dependent DNA helicase PcrA [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430783486|gb|AGA68769.1| ATP-dependent DNA helicase PcrA [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 754
Score = 238 bits (608), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 211/722 (29%), Positives = 340/722 (47%), Gaps = 100/722 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
L+ LN Q +A PLLI+AG GSGK GI P NILA+TFT A
Sbjct: 4 LEDLNPVQCQA-VEHREGPLLILAGAGSGKTRVLTYRIAHLIAQGIDPWNILAITFTNKA 62
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSE-FLIYGHGQQRRAII 349
A EMR+R+ S+VG + + L ++TFHS +++ R+ L S F+IY G Q
Sbjct: 63 AQEMRERVYSLVG-SEGRGLWVATFHSACVRILRNEIGYLPGYSRSFVIYDSGDQ----- 116
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ VVK ++ + F RA L ++
Sbjct: 117 ----------LAVVKSCMKELALDEKKFA-PRAILSTISD-------------------- 145
Query: 410 GMDVAKASGKTPAEF-RKIGDEIGAAILENYNGI---LRSCNALDYHDLISCSVKLLSTF 465
AK +TP +F R+ D + YN L NALD+ D+I +V+L
Sbjct: 146 ----AKNKLQTPDDFSRRATDYFEQKVESVYNLYQKKLIGNNALDFDDIIMLTVRLFREN 201
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISG 524
PEV +YQD ++ I+VDE+QDT+ QY+L+ +LA R + +VGDDDQSI+ F GAD+
Sbjct: 202 PEVLAQYQDKFRYILVDEYQDTNHAQYALINLLAKKYRNLCVVGDDDQSIYMFRGADVKN 261
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
F +D+ K ++L +NYRST+ I++AA++++Q+N +R + K++ TDN G I+
Sbjct: 262 ILDFERDYPEAKVLKLEQNYRSTKSILQAANAVVQNNTERKE-KSLWTDNEDGQPIVYYV 320
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH- 643
NE + ++ ++I + N + A+LYR +V + F IP+ I
Sbjct: 321 SENEHDEARYMAERI-QRLLNVEGR--RFNDFAVLYRTNAQSRVVEERFMREGIPYRIFS 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
G+ FY + ++ I+A LR D + RV KR + ST+ K
Sbjct: 378 GLKFYERMEIKDILAYLRILHNPADQVSFSRVLNV--------PKRGLGE----STLEKI 425
Query: 704 SFISAACD--IFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ + + A + + T+ +K LL ++L++ +++ +SV +V
Sbjct: 426 LDYATEQEMPVLDAIMEANYIPELQTRAKKPLLAF---AQLMQELKTLAVEESSVTRLVE 482
Query: 762 QKYLLEQRAVVD-FDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
+ +L++ D G K + ++ ++L VT K +E V+ ++
Sbjct: 483 E--ILKRTGYWDNLIGDKSPEAEARQENIREFL--SVTAEYDEKADQYEETVEVEGMEEA 538
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
L F++ +S T +E +V + TIH +KGLE+ +VF+ E P
Sbjct: 539 VRPGLAGFLEQVS--LVAQIDTLDQGDE-AVVMMTIHSAKGLEFPVVFIGGMEEGIFPSS 595
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPH 937
V + EERRL YVA+TRAR++L++ Y M+ Q +PS F +EIP
Sbjct: 596 RSMLDPV-----LLAEERRLCYVAITRARERLYLSYAQQRMLYGRTQYNRPSEFFQEIPT 650
Query: 938 HL 939
+
Sbjct: 651 QI 652
>gi|311740890|ref|ZP_07714717.1| ATP-dependent DNA helicase PcrA [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311304410|gb|EFQ80486.1| ATP-dependent DNA helicase PcrA [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 841
Score = 238 bits (608), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 197/728 (27%), Positives = 336/728 (46%), Gaps = 87/728 (11%)
Query: 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAA 290
+ LN QQLEA +PLLIVAG GSGK G++P ILA+TFT A
Sbjct: 43 EGLNPQQLEAVT-HSGSPLLIVAGAGSGKTAVLTRRIAYLMRHRGVNPWEILAITFTNKA 101
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAII 349
A+EM++R+G +VG A+ + +STFHS +++ R +A+ + + F IY RR +
Sbjct: 102 AAEMKERVGGLVGP-VAERMWVSTFHSICVRILRQNAQLVPGLNTNFTIYDGDDARRLL- 159
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++ + L +K+ + +L + L ++ + Q K
Sbjct: 160 ---SMIAKDMQLDLKKYTPRVLAN---------QISNHKNELIGPKTALEKAQQTK---- 203
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
P E A + Y LR+ NA+D+ DLI V++ + +V
Sbjct: 204 ----------NPFETTV------AQVYAEYQRRLRAANAVDFDDLIGEVVRIFTQHQQVV 247
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRIT-------IVGDDDQSIFSFNGADI 522
+ Y+ +K +++DE+QDT+ QY+L+ L + +VGD DQSI++F GA I
Sbjct: 248 EFYRRRFKHVLIDEYQDTNHAQYALVAALVGRGELGPDAPELCVVGDSDQSIYAFRGATI 307
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
F +D+ I L +NYRST+ I+ AA+++I N R + KN+ T + G +I+
Sbjct: 308 RNIQEFERDYPQAHTILLEQNYRSTQTILNAANAVIAKNENRRE-KNLWTAHGEGEQIVG 366
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN- 641
NE + FI +I A G SY IA++YR + + + F IP+
Sbjct: 367 YVADNEHDEARFIASEIDSLADKG----RSYSDIAVMYRTNNASRALEDIFIRSGIPYKV 422
Query: 642 IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
+ G FY ++ +R ++A LR D RR+ + ++ + HI +
Sbjct: 423 VGGTRFYERREIRDMVAYLRILDNPDDTVSLRRIIN---VPKRAIGDKAQGHIALHAENH 479
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGR------KVLLTLEMISKLVRREPSISAVITS 755
SF A D+ + G R+ G+ + + + V +P + ++++
Sbjct: 480 GISFGKALADVPRGDVPGLGTRAINAVGKFNDMMEGIRNQIPSMRDEVTGQPDLGELLSA 539
Query: 756 VANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVD 815
+ + K LE D G L+ N+L SV + ++ + L+ A + +
Sbjct: 540 ILDATGYKAELENSN--DPQDGARLDNLNELVSVAREFTSEAANQLAASGADAVDPSELV 597
Query: 816 QDKKGCINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIHQSKGLEWDIVFVAKANE 874
++ + L+AF++ +S Q D+E VT+ T+H +KGLE+ +VF+ +
Sbjct: 598 EEGEAAPGSLQAFLEKVSLVADAD---QIPDSETGVVTMMTLHTAKGLEFPVVFLTGWED 654
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW--QLLQP-SRF 931
+ P + + EERRL YV +TRAR++L++ ++ + W + P SRF
Sbjct: 655 GQFPHMRSLGDP-----KELSEERRLAYVGITRAREQLYLTRAILRSAWGNPVTNPASRF 709
Query: 932 LKEIPHHL 939
L E+P L
Sbjct: 710 LGEVPEDL 717
>gi|374611824|ref|ZP_09684608.1| ATP-dependent DNA helicase PcrA [Mycobacterium tusciae JS617]
gi|373548792|gb|EHP75477.1| ATP-dependent DNA helicase PcrA [Mycobacterium tusciae JS617]
Length = 778
Score = 238 bits (608), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 214/736 (29%), Positives = 335/736 (45%), Gaps = 102/736 (13%)
Query: 240 EYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAM 284
E + L+ LN QQ +A + TPLLIVAG GSGK + +LA+
Sbjct: 17 ESDQLLEGLNPQQRQAVLHE-GTPLLIVAGAGSGKTAVLTRRIAYLLAAREVGVGQVLAI 75
Query: 285 TFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQ 343
TFT AA+EMR+R+ ++VG A+ + +STFHS +++ R+ A L S F IY
Sbjct: 76 TFTNKAAAEMRERVVALVGP-RARSMWVSTFHSTCVRILRNQASLLPGLNSNFSIYDADD 134
Query: 344 QRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQY 403
RR ++ ++ + L KR S +L +S+ K
Sbjct: 135 SRRLLM----MIGKDMGLDTKRYSPRLLAN--------------------GISNHK---- 166
Query: 404 NKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
N+ A+AS R I A + Y LR+ NALD+ DLI +V +L
Sbjct: 167 NELVSPEQAAAEASEAGEELPRII-----AEVYGEYQRRLRAANALDFDDLIGETVAVLQ 221
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN--------RITIVGDDDQSIF 515
FP++ Q Y+ ++ I+VDE+QDT+ QY L++ L + +VGD DQSI+
Sbjct: 222 AFPQIAQYYRRRFRHILVDEYQDTNHAQYVLVRELVGRETEDGVAPAELCVVGDADQSIY 281
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I + F +DF + I L +NYRST+ I+ AA+S+I N R + K + TD+
Sbjct: 282 AFRGATIRNIEDFERDFPDATTILLEQNYRSTQNILSAANSVISRNAGRRE-KRLWTDSG 340
Query: 576 HGSKIIIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
G I+ NE + F+ +I L + G I SY +A+ YR S + + F
Sbjct: 341 EGELIVGYVADNEHDEARFVAGEIDALADGARGAGDI-SYNDVAVFYRTNNSSRALEEVF 399
Query: 634 RERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID 692
IP+ + GV FY ++ +R I+A LR D RR+ ++ + D
Sbjct: 400 IRAGIPYKVVGGVRFYERREIRDIVAYLRVLDNPGDSVSMRRILNT-------PRRGIGD 452
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRR-EPSISA 751
+ + S + D A G + + +EM+ +L R + +
Sbjct: 453 RAEACVAVYAESTGATFNDSLQAAAEGKVPMLNTRSEKCIAGFVEMLDELRGRLDGELGE 512
Query: 752 VITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEE 811
++ +V + + LE + D L DN L L++ +F S A+
Sbjct: 513 LVEAVLDRTGYRTELESSS----DPQDLARLDN-----LNELVSVAHEF-SIDLANAEAL 562
Query: 812 GNVDQDKKGCINVLKAFIDYIS-----ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDI 866
G + + VL F++ +S + EH VT+ T+H +KGLE+ +
Sbjct: 563 GEPEDEDIPDTGVLAKFLERVSLVADADELPEH-------GAGVVTMMTLHTAKGLEFPV 615
Query: 867 VFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW--Q 924
VFV + P + + EERRL YV +TRAR++L++ + ++W
Sbjct: 616 VFVTGWEDGMFPHMRALGDP-----AELSEERRLAYVGITRARQRLYLSRAKIRSSWGQP 670
Query: 925 LLQP-SRFLKEIPHHL 939
+L P SRFLKEIP HL
Sbjct: 671 MLNPESRFLKEIPQHL 686
>gi|298246492|ref|ZP_06970298.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963]
gi|297553973|gb|EFH87838.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963]
Length = 837
Score = 238 bits (608), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 203/733 (27%), Positives = 327/733 (44%), Gaps = 117/733 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L LN+ Q +A P+LI+AGPGSGK +SP +ILA+TFT
Sbjct: 8 LDGLNEPQRQAVT-TTQGPVLILAGPGSGKTRVITHRIAYLVQHEHVSPWHILAVTFTNK 66
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAE---KLERTSEFLIYGHGQQRR 346
AA EMR+R+ +VG + +K+++I TFH+ ++ R A+ L F+I Q
Sbjct: 67 AAREMRERMEKLVGVSASKDMSIGTFHAICARVLRMEADALLPLGLNRSFVILDTDDQLS 126
Query: 347 AIIEAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNK 405
+ +A+R L +EK+ I H RA N ML
Sbjct: 127 LVKQAIRELNLDEKLYRPNAI---------HGQISRAK----NEML-------------- 159
Query: 406 FERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
G D + + RK +E+ A + + Y +LR+ N++D+ DL+ + +L
Sbjct: 160 ----GPD------QMAEQARKYSEEVAARVYKVYQRLLRANNSVDFDDLLMLTEQLWRRE 209
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN--------RITIVGDDDQSIFSF 517
PE+ Q YQ W+ I VDEFQD + QY L+++L S + +VGDDDQ I+++
Sbjct: 210 PEILQRYQRHWQYIHVDEFQDCNLPQYKLIRLLGSGTADRQEGLRNVCVVGDDDQMIYTW 269
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GA F +DF + K I L +NYRST+ I++AA ++Q N R Q KN+ T G
Sbjct: 270 RGASAENVVRFERDFPHTKVILLEQNYRSTQNILDAAQEIVQQNRLRKQ-KNLWTAQGQG 328
Query: 578 SKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERK 637
KI I E NE+ + F +I+ + G + G IA++YR + + F
Sbjct: 329 EKITIYEAFNEEMEGQFTAHEIIRLLARG--DVGGRGDIAVMYRTNAQSRALEEQFLRMN 386
Query: 638 IPFNIHGV-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDK 696
IP+ + G FY +K ++ +IA LR DD + R+ + ++ + I + K
Sbjct: 387 IPYKVIGSRKFYERKEIKDMIAYLRLLANPHDDLSFERIVN---VPNRKIGPKTIGELKK 443
Query: 697 ISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSV 756
+ + S A + GT R+ L K+++ L+ S
Sbjct: 444 WTKQQGISLYEAVQRVEKHTTLGTAARNSLQNFSKLIVDLQ-----------------SA 486
Query: 757 ANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQ 816
+P LL++ A G +LR+ + L + L + A D
Sbjct: 487 VEELPLPELLDRIAERTGYG-------PELRANAEEELDRWANVLELRRVAE------DY 533
Query: 817 DKKGCINVLKAFIDYI-------SERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFV 869
+ L+ F++ + + + +E+ + +SVTL T+H +KGLE+ +VF+
Sbjct: 534 SEIETPVALELFLENVALVGGADTAQTSENGALVNEEQNDSVTLITLHAAKGLEYPVVFI 593
Query: 870 AKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLL 926
+E +P N + YV TRA K+L+++ + W Q
Sbjct: 594 VGMDEGSLPHSRSINTPEELEEERRLA-----YVGFTRAMKRLYLVRARRRSLWGETQYT 648
Query: 927 QPSRFLKEIPHHL 939
+PSRFL +IP HL
Sbjct: 649 EPSRFLSDIPLHL 661
>gi|227501454|ref|ZP_03931503.1| ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49725]
gi|227077479|gb|EEI15442.1| ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49725]
Length = 795
Score = 238 bits (608), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 207/740 (27%), Positives = 349/740 (47%), Gaps = 93/740 (12%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
+N QQLEA PLLIVAG GSGK G++P LA+TFT AA+
Sbjct: 1 MNPQQLEAVT-HTGRPLLIVAGAGSGKTAVLTRRIAYLMRHRGVNPWESLAITFTNKAAA 59
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAIIEA 351
EM++R+GS+VG A+ + +STFHS +++ R +A+ + + F IY RR +
Sbjct: 60 EMKERVGSLVGP-VAERMWVSTFHSICVRILRQNAQLVPGLNTNFTIYDGDDARRLLSMI 118
Query: 352 VRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQY-NKFERDG 410
+ ++ + R+ + ++ N ++ + ++ K Q N FE
Sbjct: 119 AKDMQLDLKKYTPRVLANQISN------------HKNELVGPAEAADKAQQTKNPFETTV 166
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
DV AE+++ LR+ NA+D+ DLI V++ + +V +
Sbjct: 167 ADVY-------AEYQRR---------------LRAANAVDFDDLIGEVVRIFTEHKQVVE 204
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRIT-------IVGDDDQSIFSFNGADIS 523
Y+ +K +++DE+QDT+ QY+L+ L + +VGD DQSI++F GA I
Sbjct: 205 FYRRRFKHVLIDEYQDTNHAQYALVAALVGKGELGPDAPELCVVGDSDQSIYAFRGATIR 264
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
+ F +D+ I L +NYRST+ I+ AA+++I N R + KN+ T + G I+
Sbjct: 265 NIEEFERDYPQAHTILLEQNYRSTQTILNAANAVIAKNENRRE-KNLWTAHGDGESIVGY 323
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-I 642
NE + FI +I A G SY IA++YR S + + F IP+ +
Sbjct: 324 VADNEHDEARFIAAEIDALADKG----HSYSDIAVMYRTNNSSRALEDIFIRSGIPYKVV 379
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRK 702
G FY ++ +R ++A LR D RR+ + ++ + I + +
Sbjct: 380 GGTRFYERREIRDMVAYLRIMDNPDDTVSLRRIIN---VPKRAIGDKAQGQIALHAENQG 436
Query: 703 CSFISAACDIFGAKISGTFKRS--------QLTQGRKVLLTLEMISKLVRREPSISAVIT 754
SF A D+ + G R+ + +G + + + V +P + ++T
Sbjct: 437 ISFGKALADVPRGDVPGLGTRAVNAVTKFNDMMEG--IRAQIPGMRDEVTGQPDLGELLT 494
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
++ + K LE+ D G L+ N+L SV + ++ + L+ A + +
Sbjct: 495 AILDATGYKAELEKSN--DPQDGARLDNLNELVSVAREFTSEAANQLAAAGADAVDPNEL 552
Query: 815 DQDKKGCINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIHQSKGLEWDIVFVAKAN 873
++ + L+AF++ +S Q D+E VT+ T+H +KGLE+ +VFVA
Sbjct: 553 LEEGEAAPGSLQAFLEKVSLVADAD---QIPDSETGVVTMMTLHTAKGLEFPVVFVAGWE 609
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW--QLLQP-SR 930
+ + P + N K + EERRL YV +TRAR+KL++ ++ + W + P SR
Sbjct: 610 DGQFPHMRSLG---NPK--ELSEERRLAYVGITRAREKLYLTRAILRSAWGNPVTNPASR 664
Query: 931 FLKEIPHHLREVQAEQSVQD 950
FL EIP L + + E S D
Sbjct: 665 FLAEIPEDLIDWRREDSDSD 684
>gi|172056503|ref|YP_001812963.1| ATP-dependent DNA helicase PcrA [Exiguobacterium sibiricum 255-15]
gi|171989024|gb|ACB59946.1| ATP-dependent DNA helicase PcrA [Exiguobacterium sibiricum 255-15]
Length = 741
Score = 238 bits (608), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 221/755 (29%), Positives = 342/755 (45%), Gaps = 133/755 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
+ LN +Q +A PLLI+AG GSGK ++P NILA+TFT
Sbjct: 9 VSGLNPEQAKA-VKHTDGPLLIMAGAGSGKTRVLTHRVAYLMAAKQVAPWNILAITFTNK 67
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMRDRI +VG A ++ +STFHS +++ R EK+ F I Q+ A+
Sbjct: 68 AAREMRDRISRLVG-GVANDIWVSTFHSMCVRMLRRDIEKIGYNRNFTILDSSDQQSALK 126
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF--- 406
LV+K + D D SM S Q N+
Sbjct: 127 -----------LVLKEQNLDPKKWDPR-----------------SMLSIISSQKNELRSA 158
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
E V KT AE I + Y +LR NALD+ DLI + +L P
Sbjct: 159 EFYASIVTNPYEKTVAE-----------IYKGYEAVLRRNNALDFDDLIGKTTELFKQNP 207
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGF 525
+V YQ ++ I VDE+QDT+ QY L+ +LA+ H + +VGD DQSI+ + GADI+
Sbjct: 208 DVLSFYQRKFQYIHVDEYQDTNKAQYDLVNLLAAAHQNLCVVGDSDQSIYRWRGADIANI 267
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
SF +D+ K I L +NYRS++ I++AA+ +IQ+N R K + T+N+ G K+I+
Sbjct: 268 LSFEEDYPTAKVILLEQNYRSSKRILDAANHVIQNNSTRKD-KKLWTENAEGEKLIVHTA 326
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHG 644
NE + +I+ +I G +AILYR + + + +P+ I G
Sbjct: 327 ENEREEAFYIVQEIRNALRYG----MKLNDVAILYRTNAQSRAIEETLLKSNVPYKMIGG 382
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKIST 699
FY +K ++ ++A LR +D + R+ E KR ID + +
Sbjct: 383 TKFYDRKEIKDVLAYLRLISNPNEDLSFARIVN--------EPKRGIGATTIDKLRDFAD 434
Query: 700 IRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANM 759
++ S + A DI + I+ ++LT R ++L L+ + + + S+S ++ V
Sbjct: 435 LQGVSLMEAIRDIELSSIAPK-TAAKLTDFRTMILGLQQMQEFI----SLSELVEEVLEK 489
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
+ ++L ED L + Q L ++ +F++ KE D + +
Sbjct: 490 TGYR--------------QVLKEDKTLEA--QSRLENINEFITVAQNFEKETEKADPEDQ 533
Query: 820 GCINVLK-----AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
I L A +D + E D VTL T+H +KGLE+ IVF+ E
Sbjct: 534 TIIAFLTDLTLVADVDSLDE----------SDLGEQVTLMTLHSAKGLEFPIVFLIGMEE 583
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQ 927
P + +EEERRL YV +TRA K+L++ LY +AN +
Sbjct: 584 GLFPHSRSL-----QDEDEMEEERRLAYVGITRAEKRLYLSHARMRSLYGRTNANLE--- 635
Query: 928 PSRFLKEIPHHLREVQAEQSVQDQHEN--IPEGTA 960
SRFL E+P + E ++ E+ +P+G A
Sbjct: 636 -SRFLAELPEEVLERTGKKPKPLPWEDRPVPQGKA 669
>gi|297571848|ref|YP_003697622.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595]
gi|296932195|gb|ADH93003.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595]
Length = 836
Score = 238 bits (608), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 218/786 (27%), Positives = 349/786 (44%), Gaps = 121/786 (15%)
Query: 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAA 290
+ LN QQ +A LL+VAG GSGK P ILA+TFT A
Sbjct: 54 EGLNPQQHQAVV-HTGGHLLVVAGAGSGKTRVLTTRIAYLIAAGKARPGEILAITFTNKA 112
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIE 350
A EMR+R+ ++G A+ + ISTFHS +++ R+ + L S F IY R +
Sbjct: 113 AKEMRERLEGLLGD-VARRMWISTFHSACVRILRTEHKALGMRSSFTIYDAADSARLM-- 169
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
+++ E+ + +K S ML+ R + N+M+ + + + +RD
Sbjct: 170 --KIVAQEEQIDIKAFSPKMLS--------RKVSDLKNSMVTVAQ-----AKGHAIDRD- 213
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
D++ A Y LR+ NA+D+ DLI +V LL P + +
Sbjct: 214 ------------------DQVIAQAYAGYQRRLRAANAVDFDDLIMLTVGLLRDNPAIAE 255
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILAS------HNRITIVGDDDQSIFSFNGADISG 524
Y+ ++ ++VDE+QDT+ QY L++ L H +T+VGD DQSI++F GA I
Sbjct: 256 HYRRRFRHVLVDEYQDTNTAQYQLVRELVGEETDPIHGELTVVGDADQSIYAFRGATIRN 315
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+ F +DF N + L +NYRST+ I+ AA+SLI +N R + K + T G K++
Sbjct: 316 IEDFDQDFPNATSVVLEQNYRSTQNILTAANSLIANNQGR-RPKKLWTAAGDGPKLVGYV 374
Query: 585 CHNEDAQCAFIIDKI----LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
E + AF++++I +H YG IA+ YR + + F IP+
Sbjct: 375 ADAEVDESAFVVEEIDAVRTKHG-------YKYGDIAVFYRANAQSRAIEEMFVRSGIPY 427
Query: 641 N-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVF---KAFLLLEKEEKKRVIDHIDK 696
+ G FY +K ++ +A L D RR+ K L + EE V H +K
Sbjct: 428 KVVGGTKFYERKEIKDALAYLHAVANPDDTVSIRRILNEPKRGLGAKAEET--VAFHAEK 485
Query: 697 ISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRK----VLLTLEMISKLVRREPSISAV 752
SF + D+ + + RS + +K ++ I + R+E A
Sbjct: 486 YG----ISFGQSLLDVAHPETAVAEGRSAVDGLQKRAANAMIAFATILETARKEAEEGAA 541
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDF--LSTKFTAAKE 810
+ + L++ +D +L E D + ++ + ++ +F +++ F
Sbjct: 542 PADILDS-----LMDASGYLD-----VLQESKDPQDEVR--VENLAEFHAVASDFRVRNP 589
Query: 811 EGNVDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFV 869
EG L F+D IS +++ + E V L TIH +KGLE+ +VF
Sbjct: 590 EGT-----------LAEFLDQISLVADSDQIPDEAEGYEGEVVLMTIHTAKGLEFPVVFA 638
Query: 870 AKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLL 926
+ P + T + EERRL YVA+TRAR++L+I + W Q L
Sbjct: 639 TGFEDGTFPHIRSLGSP-----TELAEERRLAYVALTRARERLYITRSATRSQWGAPQEL 693
Query: 927 QPSRFLKEIPHHLREVQAEQSVQDQHENIPEGTAQFTINLPREENCCETDLVSTDFLNVQ 986
SRFL EIP + E + E+S D G+A+ + R D +DF
Sbjct: 694 PRSRFLDEIPDGVIEWRREESSMDTVRGSSWGSARDSWGSKRNSWSSAGD--DSDFAPAI 751
Query: 987 LSGAAT 992
SG A+
Sbjct: 752 GSGKAS 757
>gi|403237396|ref|ZP_10915982.1| ATP-dependent DNA helicase PcrA [Bacillus sp. 10403023]
Length = 742
Score = 238 bits (608), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 220/738 (29%), Positives = 346/738 (46%), Gaps = 119/738 (16%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTF 286
+K L LN+QQ EA PLLI+AG GSGK ++P +ILA+TF
Sbjct: 6 NKLLSGLNEQQQEAVKA-TDGPLLIMAGAGSGKTRVLTHRIAYLMVEKEVAPWSILAITF 64
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR 346
T AA EM++R+ +I+G A A+++ ISTFHS +++ R +++ + F I Q
Sbjct: 65 TNKAAREMKERVQAILGGA-AEDIWISTFHSMCVRILRRDIDRIGFSRNFSILDTTDQLS 123
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
I + IL K I G ++SS
Sbjct: 124 VI---------KNILKEKNIDPKKFDPRSILG---------------TISS--------- 150
Query: 407 ERDGMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLL 462
AK +TP ++ K ++I + + + Y LR ALD+ DLI ++ L
Sbjct: 151 -------AKNELQTPEDYEKTAGGMYEQIVSDVYKLYQKRLRKNQALDFDDLIMTTIHLF 203
Query: 463 STFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGAD 521
PEV + YQ ++ I VDE+QDT+ QY L+++LAS R + +VGD DQSI+ + GAD
Sbjct: 204 QRVPEVLEFYQRKFQYIHVDEYQDTNRAQYLLVKLLASRFRNLCVVGDSDQSIYRWRGAD 263
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII 581
I+ SF KD+ N K I L +NYRST+ I++AA+ +IQ+N+ R + KN+ T+N G KI
Sbjct: 264 IANILSFEKDYKNAKVILLEQNYRSTKTILQAANEVIQNNMNR-KPKNLWTENDEGKKIF 322
Query: 582 IKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN 641
+E + F+ KI E + G ++ IAILYR +V + + I +
Sbjct: 323 YYRADSESGEAQFVAGKIRELVNGGER---TFKEIAILYRTNAQSRVMEEVLLKSNINYQ 379
Query: 642 I-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTI 700
I G+ FY +K ++ ++A LR DD R+ + ++ ID I +
Sbjct: 380 IVGGIKFYDRKEIKDLLAYLRVISNPDDDISLTRIIN---VPKRGIGATSIDKIANYAIA 436
Query: 701 RKCSFISAACDI----FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSV 756
+ S A ++ AKI+ + + + ++I+ + + +S V V
Sbjct: 437 QDLSMFQALQEVEQIGLSAKITNSLREFR-----------DLINNWGQMQDYLS-VTELV 484
Query: 757 ANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQ 816
N++ + LE +L + L S Q + ++ +FLS T E+ N D+
Sbjct: 485 ENVLEKTGYLE-----------VLKAEKTLES--QSRIENIEEFLSV--TQNFEKANDDK 529
Query: 817 DKKGCIN--VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
+ L A ID + E E +D N+V L T+H +KGLE+ +VF+ E
Sbjct: 530 SLVAFLTDLALVADIDKLDEDE--------NDKNNAVVLMTLHSAKGLEFPVVFLMGMEE 581
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW--QLLQP-SRF 931
P +EEERRL YV +TRA ++L++ M + + P SRF
Sbjct: 582 GVFPHSRSLMEE-----AEMEEERRLAYVGITRAEEELYLSNAQMRTLYGRTSMNPVSRF 636
Query: 932 LKEIPHHLREVQAEQSVQ 949
+ EIP +L E +Q Q
Sbjct: 637 IAEIPENLLEDLGDQRRQ 654
>gi|332881952|ref|ZP_08449593.1| ATP-dependent DNA helicase PcrA [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|332680078|gb|EGJ53034.1| ATP-dependent DNA helicase PcrA [Capnocytophaga sp. oral taxon 329
str. F0087]
Length = 781
Score = 238 bits (608), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 220/722 (30%), Positives = 345/722 (47%), Gaps = 99/722 (13%)
Query: 239 DEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAM 284
D +SK L+ LN Q AA P++++AG GSGK G+ NILA+
Sbjct: 2 DLFSKELERLNAPQ-RAAVLQKEGPIIVIAGAGSGKTRVLTYRIANLMRQGVDAFNILAL 60
Query: 285 TFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQ 344
TFT AA+EM+ RI IVG AK L + TFHS ++ R A+KL F IY
Sbjct: 61 TFTNKAANEMKKRIADIVGNNEAKNLWMGTFHSVFARILRFEADKLGFPQNFTIYDTQDS 120
Query: 345 RRAIIEAVRLLENEK-ILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQY 403
+R I ++ E +K + K+I + + + +RA +S +L +
Sbjct: 121 QRLINGIIKEKELDKDVYKYKQIQQRISSLKNNLITVRAYF-----------NSPELIE- 168
Query: 404 NKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
A A+ + P + GD I + Y A+D+ DL+ + +LL+
Sbjct: 169 ----------ADAARRQP----RFGD-----IYQEYVDRCFKAGAMDFDDLLLRTNELLN 209
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS--HNRITIVGDDDQSIFSFNGAD 521
FPEV +YQ+ ++ I+VDE+QDT+ QY +++ LA HN I +VGDD QSI++F GA+
Sbjct: 210 VFPEVLAKYQNRFQYILVDEYQDTNHSQYLIVKALADRFHN-ICVVGDDAQSIYAFRGAN 268
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII 581
I+ +F+ D+ KE +L +NYRST+ IVEAA+S+I+HN R K V T+N G I
Sbjct: 269 INNILNFKSDYPEAKEYKLEQNYRSTKNIVEAANSVIEHNKIRLD-KVVFTENELGEPIK 327
Query: 582 IKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN 641
+ + + F+ I E N GS A+LYR + + A R+R IP+
Sbjct: 328 VHRSATDADEGRFVAGSIFE---NKMQHQLPNGSFAVLYRTNSQSRAIEDALRKRDIPYR 384
Query: 642 IH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRV--FKAFLLLEKEEKKRVI--DHIDK 696
I+ G++FY++K ++ ++A LR + D+ R+ F A + E +K + +H K
Sbjct: 385 IYGGLSFYQRKEIKDVLAYLRLIINPNDEEALVRIINFPARGIGETTMEKLTLAANHYKK 444
Query: 697 ISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSV 756
S I+ D+ I+ T R +LT ++L + ++K A V
Sbjct: 445 -SLFEVMYNINKLPDL---HINST-TRQKLTDFVVMILNFQALNK--------EANAFEV 491
Query: 757 ANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQ 816
A V +K L Q D + +N ++ +L + DF++ + A G
Sbjct: 492 AEQVAKKTGLLQEFKKDGTPEGIAKMEN-----IEEMLNGIKDFVAGQEDIADSTG---- 542
Query: 817 DKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
+ +Y+ + + +E+ V L TIH +KGLE+ V+V E
Sbjct: 543 ----------SLTEYLEDVSLATDSDKEIGDEDRVALMTIHLAKGLEFPYVYVVGMEEDL 592
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLK 933
PL + +EEERRL YVA+TRA K+ ++ Y W L +PSRF++
Sbjct: 593 FPLAKSI-----QSREELEEERRLFYVALTRAEKQAYLTYAENRYRWGQLSPSEPSRFIE 647
Query: 934 EI 935
EI
Sbjct: 648 EI 649
>gi|290958050|ref|YP_003489232.1| ATP-dependent DNA helicase II [Streptomyces scabiei 87.22]
gi|260647576|emb|CBG70681.1| putative ATP-dependent DNA helicase II [Streptomyces scabiei 87.22]
Length = 836
Score = 238 bits (608), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 214/729 (29%), Positives = 329/729 (45%), Gaps = 104/729 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L LND Q AA +PLLIVAG GSGK + P ILA+TFT
Sbjct: 70 LDGLNDNQ-RAAVVHAGSPLLIVAGAGSGKTRVLTHRIAHLLGERRVHPGQILAITFTNK 128
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A + + TFHS +++ R ++KL TS F IY +R +
Sbjct: 129 AAGEMKERVEQLVGP-RANAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMA 187
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R L+ L KR F SF + + + +
Sbjct: 188 LVCRDLD----LDPKR---------------------------FPPKSFS-AKISNLKNE 215
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+D + + F K + A Y LR NALD+ DLI +V LL FP+V
Sbjct: 216 LIDEEDFAAQATDGFEKTLAQAYAL----YQSRLREANALDFDDLIMTTVNLLRAFPDVA 271
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN----------------RITIVGDDDQS 513
+ Y+ ++ ++VDE+QDT+ QY+L++ L + + +VGD DQS
Sbjct: 272 EHYRRRFRHVLVDEYQDTNHAQYALVRELVGTSEHPVDVPPDEWDVPPAELCVVGDADQS 331
Query: 514 IFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTD 573
I++F GA I F +D+ + I L +NYRST+ I+ AA+++I+ N R + KN+ T+
Sbjct: 332 IYAFRGATIRNILQFEEDYPDATTILLEQNYRSTQTILSAANAVIERNESR-RPKNLWTN 390
Query: 574 NSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
G++I E + F+ D+I G A G +A+ YR +VF+ F
Sbjct: 391 AGAGAQITGYVADTEHDEAQFVADEIDRLTDAGDAKA---GDVAVFYRTNAQSRVFEEVF 447
Query: 634 RERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID 692
+P+ + GV FY +K VR ++A LR D P RR+ + ++ R
Sbjct: 448 IRVGLPYKVVGGVRFYERKEVRDVLAYLRVLANPEDSVPLRRILN---VPKRGIGDRAEA 504
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTL-EMISKLVRREPSISA 751
+D +S K SF A + A G RS T K TL + + +V +
Sbjct: 505 MVDALSQREKISFPQALKRVDEAY--GMAARS--TNAVKRFNTLMDDLCTVVESGAGPAT 560
Query: 752 VITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEE 811
++ +V YL E +A D +D LQ L A +F A E
Sbjct: 561 ILEAVLERT--GYLAELQASTD-------PQDETRIENLQELAAVALEFEQESGAAEAEG 611
Query: 812 GNVDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVA 870
+ G L AF++ ++ +++ + D +TL T+H +KGLE+ +VF+
Sbjct: 612 EEAAANPAG----LPAFLERVALVADSDQIPDEEEDGSGVITLMTLHTAKGLEFPVVFLT 667
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQ 927
+ P + G E +EEERRL YV +TRAR++L++ + + W
Sbjct: 668 GMEDGVFPHMRAL-GQTKE----LEEERRLAYVGITRARERLYLTRSSLRSAWGQPSYNP 722
Query: 928 PSRFLKEIP 936
PSRFL+EIP
Sbjct: 723 PSRFLEEIP 731
>gi|365862828|ref|ZP_09402561.1| putative ATP-dependent DNA helicase [Streptomyces sp. W007]
gi|364007742|gb|EHM28749.1| putative ATP-dependent DNA helicase [Streptomyces sp. W007]
Length = 782
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 216/723 (29%), Positives = 330/723 (45%), Gaps = 102/723 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN +Q AA +PLLIVAG GSGK G P ILA+TFT
Sbjct: 36 LDGLNTEQ-RAAVVHAGSPLLIVAGAGSGKTRVLTHRIAHLLAERGTHPGQILAITFTNK 94
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A + + TFHS +++ R ++KL TS F IY +R +
Sbjct: 95 AAGEMKERVEQLVGP-RANAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMA 153
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
LV + + D F SF + + + +
Sbjct: 154 -----------LVCRDLDLDPKQ--------------------FPPKSFT-AKVSNLKNE 181
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+D +G+ F K + A Y LR NALD+ D+I +V LL FP+V
Sbjct: 182 LIDEETFAGQAADGFEKTLAQAYAL----YQARLREANALDFDDIIMTTVHLLQAFPDVA 237
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILA-------SHNRITIVGDDDQSIFSFNGADI 522
+ Y+ ++ ++VDE+QDT+ QY+L++ L + + +VGD DQSI++F GA I
Sbjct: 238 EHYRRRFRHVLVDEYQDTNHAQYTLVRELVGPAGEADAPAELCVVGDADQSIYAFRGATI 297
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
F +D+ + I L +NYRST+ I+ AA+++I+ N R + KN+ T+ G++I
Sbjct: 298 RNILQFEEDYPSATTILLEQNYRSTQTILSAANAVIERNESR-RPKNLWTNAGSGARITG 356
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN- 641
E + F+ D+I G A G +A+ YR +VF+ F +P+
Sbjct: 357 YVADTEHDEAQFVADEIDRLTDAGDAKA---GDVAVFYRTNAQSRVFEEIFIRVGLPYKV 413
Query: 642 IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
+ GV FY +K VR ++A LR D P RR+ + ++ R ID +S
Sbjct: 414 VGGVRFYERKEVRDVLAYLRVLANPEDTVPLRRILN---VPKRGIGDRAEAMIDALSMRE 470
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
K SF A + A G RS R L +E + +V + V+ +V
Sbjct: 471 KISFPQALRRVDEA--YGMAARSSNAVKRFNTL-MEELRTIVESGAGPAVVLEAVLERT- 526
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
YL E +A D +D LQ L A L + A+EEG
Sbjct: 527 -GYLAELQASTD-------PQDETRIENLQELAAVA---LEFEQERAEEEG--------- 566
Query: 822 INVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
L F++ ++ +++ + D +TL T+H +KGLE+ +VF+ + P +
Sbjct: 567 AGTLAEFLEKVALVADSDQIPDEDEDGSGVITLMTLHTAKGLEFPVVFLTGMEDGVFPHM 626
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSRFLKEIP- 936
G E +EEERRL YV +TRAR++L++ M + W PSRFL+EIP
Sbjct: 627 RAL-GQTKE----LEEERRLAYVGITRARERLYLTRAAMRSAWGQPSYNPPSRFLEEIPE 681
Query: 937 HHL 939
HL
Sbjct: 682 QHL 684
>gi|407984919|ref|ZP_11165526.1| ATP-dependent DNA helicase PcrA [Mycobacterium hassiacum DSM 44199]
gi|407373518|gb|EKF22527.1| ATP-dependent DNA helicase PcrA [Mycobacterium hassiacum DSM 44199]
Length = 770
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 216/737 (29%), Positives = 337/737 (45%), Gaps = 99/737 (13%)
Query: 240 EYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAM 284
E + L LN QQ +A + S PLLIVAG GSGK + +LA+
Sbjct: 6 ESDQLLDGLNPQQRQAVLHEGS-PLLIVAGAGSGKTAVLTRRIAYLLAARDVGVGQVLAI 64
Query: 285 TFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQ 343
TFT AA+EMR+R+ ++VG A+ + +STFHS +++ R+ A ++ S F IY
Sbjct: 65 TFTNKAAAEMRERVVALVGP-HARSMWVSTFHSTCVRILRNQASLIKGLNSNFSIYDADD 123
Query: 344 QRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQY 403
RR ++ ++ + L KR S +L T +S+ K
Sbjct: 124 SRRLLM----MIGKDMGLDTKRYSPRLLAT--------------------GISNHK---- 155
Query: 404 NKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
N+ A+A+ R I A + Y LR+ NALD+ DLI +V LL
Sbjct: 156 NELIGPEQAAAEAAEAGEELPRII-----AEVYAEYQRRLRAANALDFDDLIGETVALLQ 210
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS------------HNRITIVGDDD 511
FP++ Q Y+ ++ I+VDE+QDT+ QY L++ L + +VGD D
Sbjct: 211 AFPQIAQYYRRRFRHILVDEYQDTNHAQYVLVRELVGPDAPADDPAAVPPAELCVVGDAD 270
Query: 512 QSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQ 571
QSI++F GA I + F +DF N I L +NYRST+ I+ AA+++I N R + K +
Sbjct: 271 QSIYAFRGATIRNIEDFERDFPNATTILLEQNYRSTQNILNAANAVIARNTGRRE-KRLW 329
Query: 572 TDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQT 631
TD G I+ NE + F+ ++I G SY IA+ YR S + +
Sbjct: 330 TDAGDGEPIVGYVADNEHDEARFVAEEIDALVERG----VSYSDIAVFYRTNNSSRALEE 385
Query: 632 AFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV 690
F IP+ + GV FY +K +R I+A LR D RR+ + +R
Sbjct: 386 VFIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDSVSMRRILNT---PRRGIGERA 442
Query: 691 IDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRR-EPSI 749
+ + CSF D A G + + +EM+ +L R + +
Sbjct: 443 EACVAVYAENTGCSF----NDALQAAAEGKVPMLNTRAEKCIAAFMEMLDELRGRLDDGL 498
Query: 750 SAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAK 809
++ +V + + LE + D L DN L L++ +F S A+
Sbjct: 499 GDLVEAVLDRTGYRAELESSS----DPQDLARLDN-----LNELVSVAHEF-SIDLANAQ 548
Query: 810 EEGNVDQDKKGC--INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIV 867
+ G++D + +VL F++ +S + VTL T+H +KGLE+ +V
Sbjct: 549 DSGDIDPADEDIPDTSVLAQFLERVS--LVADADELPEEGAGVVTLMTLHTAKGLEFPVV 606
Query: 868 FVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW--QL 925
F+ + P + T + EERRL YV +TRAR++L++ + ++W +
Sbjct: 607 FLTGWEDGMFPHMRALGDP-----TELAEERRLAYVGITRARERLYVSRAKVRSSWGQPM 661
Query: 926 LQP-SRFLKEIPHHLRE 941
L P SRFL+EIP HL E
Sbjct: 662 LNPESRFLQEIPQHLIE 678
>gi|363894206|ref|ZP_09321295.1| hypothetical protein HMPREF9629_01621 [Eubacteriaceae bacterium
ACC19a]
gi|361962800|gb|EHL15907.1| hypothetical protein HMPREF9629_01621 [Eubacteriaceae bacterium
ACC19a]
Length = 723
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 215/736 (29%), Positives = 340/736 (46%), Gaps = 145/736 (19%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN++Q +A LLI+AG GSGK ++P NILA+TFT
Sbjct: 3 LDKLNEKQKQAVIT-TDGALLILAGAGSGKTRVITNKIAYLIEEKNVNPYNILAITFTNK 61
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ R+ ++G +K + ISTFH+F ++ R A + + F IY Q ++ +I
Sbjct: 62 AAKEMQSRVEDLIG-IDSKRVWISTFHAFCTRILRYEASHILYENNFTIY-DTQDKQVLI 119
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ D+L GY + +L + + S + + + +E
Sbjct: 120 KNC---------------MDIL------GYDKETLNIASVASEISRAKDSMVSVDDYE-- 156
Query: 410 GMDVAKASGKTPAEFR--KIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ +++R KI A + Y L+ NA+D+ DLI ++L E
Sbjct: 157 --------AEATSDYRNSKI-----ARVYRLYQEELKKNNAMDFDDLIYNCIRLFKLHKE 203
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFD 526
V ++YQD ++ I+VDE+QDT+ QY L+++L+ H I +VGDDDQSI+ + GADI
Sbjct: 204 VLEKYQDKFEYIMVDEYQDTNYSQYLLIKMLSQKHKNICVVGDDDQSIYGWRGADIRNIL 263
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
F KDF N +I+L +NYRST I+ AA ++I++N R K + T + +G KI I E
Sbjct: 264 EFEKDFENVIQIKLEQNYRSTSNIINAAGTVIKNNEGRKD-KRIWTSSDNGDKITIYEAT 322
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GV 645
+E+ + ++ I + G Y A+LYR + ++ AF + KIP+ I G+
Sbjct: 323 SENDESLYVAQNIRKLTEQG----YKYSDFAVLYRANALSRKYEEAFMKYKIPYKIFGGI 378
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVF---------KAFLLLEKEEKKRVIDHIDK 696
FY + ++ I+A LR DD +R+ K LE+ ++ I +D
Sbjct: 379 KFYDRMEIKDILAYLRLIDNKNDDVSLKRIINVPKRGIGAKTVEKLEQYAREHSISMLDS 438
Query: 697 ISTIRKCSFISAACDIFGA-KISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITS 755
I I + I GA K + K+ + G L+ +K++ + VI+S
Sbjct: 439 IEYISQ---------IIGAGKAQESIKKFAVMIG-----ALKAFAKILPVSELLEKVISS 484
Query: 756 VANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLL-----ADVTDFLSTKFTAAKE 810
+ L+E++ + L N+L+SV+Q ++DFL A
Sbjct: 485 TN---YENSLIEEKTP---ESQSRLENINELKSVIQEFERTSEDKSLSDFLQN----ATL 534
Query: 811 EGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVA 870
++D+D K N TL TIH +KGLE+ +VF+
Sbjct: 535 STDMDEDDKKS---------------------------NYATLMTIHSAKGLEFPVVFIV 567
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANW 923
A E P ++E + +EEERRL YVA+TRA++KLFI LY + N
Sbjct: 568 AAEENIFP---SSRSVLDE--SKLEEERRLCYVAITRAKEKLFITRAKSRLLYGKTNCNL 622
Query: 924 QLLQPSRFLKEIPHHL 939
SRF+ EI L
Sbjct: 623 ----SSRFISEIDKDL 634
>gi|429759522|ref|ZP_19292020.1| ATP-dependent DNA helicase PcrA [Veillonella atypica KON]
gi|429179483|gb|EKY20730.1| ATP-dependent DNA helicase PcrA [Veillonella atypica KON]
Length = 729
Score = 238 bits (607), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 226/744 (30%), Positives = 338/744 (45%), Gaps = 137/744 (18%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
L LN +Q + A PLLI+AG GSGK G++P ILA+TFT A
Sbjct: 5 LDGLNREQ-QQAVQHTEGPLLILAGAGSGKTKVLTVRIAYLLAQGVNPYEILAITFTNKA 63
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEK-LERTSEFLIYGHGQQRRAII 349
A EM+ R+ +VG A + +STFHSF + R + L S F IY + I
Sbjct: 64 AKEMKSRVEGLVGD-VANRIWLSTFHSFCAKFLRFELDNFLGYNSNFTIYDTSDSQVVIK 122
Query: 350 EAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
A++ L ++K V G M +++ L F+ Y K R
Sbjct: 123 AALKALNLDDKYYPV--------------GAMISAISDAKNKLMFA------SDYRKQAR 162
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D +K+ D + E Y LR NALD+ DL+ +VKLL + V
Sbjct: 163 DFYQ------------QKVAD-----VYEYYERELRKNNALDFDDLLLVAVKLLQSNAAV 205
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDS 527
+Y +K +++DE+QDT+ QY L +L+SH + I +VGD DQSI+++ GADI
Sbjct: 206 LDKYSKRFKYVMIDEYQDTNHAQYLLAYLLSSHWKNIAVVGDADQSIYAWRGADIQNILD 265
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KD+ N I+L +NYRST+ I++AA+++I +N R + KN+ TD G+KI +
Sbjct: 266 FEKDYPNCTSIKLEQNYRSTKIILDAANAVIDNNEGRPE-KNLWTDKVEGAKIQHFTAQS 324
Query: 588 EDAQCAFIIDKIL-EHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
E + AFI D I+ +H +G YG +AILYR +V + A +R +P+ + G
Sbjct: 325 EHEEAAFIGDTIVKKHDIHG----VPYGDMAILYRTNAQSRVLEEALIKRALPYTMVGGT 380
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSF 705
FY +K ++ ++A LR DD R+ KR I
Sbjct: 381 KFYDRKEIKDVLAYLRVLYNPFDDLSLLRIINV--------PKRSI-------------- 418
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYL 765
GA + G + +TL + ++ ++ +K
Sbjct: 419 --------GATTVSKLQDYARENGTSLFMTLTQLH-----------LVDTIKGKTKEK-- 457
Query: 766 LEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC---- 821
LE+ ++ F L+ E +D +SVL L A + D T + A EE QD+
Sbjct: 458 LEEFGILIF---TLVAEMDD-KSVLDILEA-ILD--RTGYLAQLEESTDPQDQARAENIG 510
Query: 822 --INVLKAFIDYISERETEHFRTQR---------HDNENSVTLTTIHQSKGLEWDIVFVA 870
++V K F D E F Q E+ VTL T+H +KGLE+ IVF+
Sbjct: 511 ELLSVAKDFQDTNPTGTVEDFLEQVALVNDVDSFEQEESKVTLMTLHAAKGLEFPIVFLG 570
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ--- 927
E P H E+ +EEERRL YV +TRA K+L+I +
Sbjct: 571 GLEEGLFP--HSRTLMNPEE---IEEERRLAYVGITRAEKELYISNATTRTVFGRTSSYL 625
Query: 928 PSRFLKEIPHHLRE-VQAEQSVQD 950
PSRF+ EIP L + ++A++ + D
Sbjct: 626 PSRFIDEIPAELVDSLRAKRRIPD 649
>gi|342217763|ref|ZP_08710401.1| ATP-dependent DNA helicase PcrA [Megasphaera sp. UPII 135-E]
gi|341592750|gb|EGS35610.1| ATP-dependent DNA helicase PcrA [Megasphaera sp. UPII 135-E]
Length = 732
Score = 238 bits (606), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 207/723 (28%), Positives = 340/723 (47%), Gaps = 103/723 (14%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFT 287
S L+ LN +Q EA + P+L+ AG GSGK G++P ILA+TFT
Sbjct: 2 SSILEGLNSRQQEAVL-QIEGPVLVTAGAGSGKTKVLTCRIAHILETGVAPQRILAITFT 60
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAE-KLERTSEFLIYGHGQQRR 346
AA EM++R+ ++G AK + ISTFHSF +L R H + K F+IY Q
Sbjct: 61 NKAAKEMQERVALLIGD-VAKSMWISTFHSFCAKLLRMHLDGKFGYHRNFVIYDSTDQ-- 117
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
+ VVK++ ++ + F + ++ ++S+ K
Sbjct: 118 -------------LTVVKKMLKELQLDENRF---------LPHVVLSTISNAK------- 148
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
+ + AK K +F + + A + Y L+ NALD+ DL++ +VKLL
Sbjct: 149 --NALLTAKEWAKQAGDFYQ---QKVAEVYFRYERELQENNALDFDDLLTYTVKLLQEDE 203
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGF 525
+ YQD ++ I++DE+QDT+ QY L +ILA R I +VGD DQSI+++ GADI
Sbjct: 204 TIRARYQDRFQYILIDEYQDTNYAQYMLTRILAKKWRNICVVGDADQSIYAWRGADIRNI 263
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
F +D+ I+L +NYRST+ I++AA+++I HN KR K + TDN G KII +
Sbjct: 264 IDFTRDYPEAVSIKLEQNYRSTKTILQAANAVISHNEKRPS-KVLWTDNECGKKIIHYQG 322
Query: 586 HNEDAQCAFIIDKIL-EHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + ++ I H G YG +AIL+R ++ + R IP+ +
Sbjct: 323 ATERDEADYVAGCIYNRHDKRGE----PYGDMAILFRINAQSRILEEELIRRGIPYTMVG 378
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
G FY +K ++ +IA LR + D RV + ++ + ++ + + R+
Sbjct: 379 GTKFYDRKEIKDVIAYLRLLVNPQDSLSLLRVIN---VPKRGVGQITLEKVVAYAEERQM 435
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
S A ++ I+ K++ +++I L + ++
Sbjct: 436 SVFYALTEVENIDIAERVKQTMKA-------FIDVIFSLAEKATTMDV------------ 476
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
+ L + + D G LL + + + A+V +FLS AKE VD + G I
Sbjct: 477 FSLLETVIKDTGYGDLLAAEARKDTRGETRQANVGEFLSV----AKE--YVDGNPNGTIQ 530
Query: 824 VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
+ +S+ ++ + E+ VTL ++H +KGLE+ IVF+ E P
Sbjct: 531 DFLETVALVSDADS------FENKESQVTLMSLHAAKGLEFPIVFLVGLEEGLFPHSRSL 584
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSRFLKEIPHHLR 940
+ +EEERRL YV +TRA ++L++ + + + PSRFL EIP L+
Sbjct: 585 MDPMQ-----LEEERRLAYVGITRAERQLYVTNAISRMWYGSISSHVPSRFLAEIPAELK 639
Query: 941 EVQ 943
+V+
Sbjct: 640 DVK 642
>gi|239990145|ref|ZP_04710809.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL
11379]
gi|291447158|ref|ZP_06586548.1| ATP-dependent DNA helicase II [Streptomyces roseosporus NRRL 15998]
gi|291350105|gb|EFE77009.1| ATP-dependent DNA helicase II [Streptomyces roseosporus NRRL 15998]
Length = 812
Score = 238 bits (606), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 214/723 (29%), Positives = 326/723 (45%), Gaps = 102/723 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN +Q AA +PLLIVAG GSGK G P ILA+TFT
Sbjct: 67 LDGLNTEQ-RAAVVHAGSPLLIVAGAGSGKTRVLTHRIAHLLAERGTHPGQILAITFTNK 125
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A + + TFHS +++ R ++KL TS F IY +R +
Sbjct: 126 AAGEMKERVEQLVGP-RANAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMA 184
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R L+ L KR T + + + +
Sbjct: 185 LVCRDLD----LDPKRYPPKSFT----------------------------AKVSNLKNE 212
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+D +G+ F K + A Y LR NALD+ D+I +V LL FP+V
Sbjct: 213 LIDEETFAGQAADGFEKTLAQAYAL----YQARLREANALDFDDIIMTTVHLLQAFPDVA 268
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQIL---ASHN----RITIVGDDDQSIFSFNGADI 522
+ Y+ ++ ++VDE+QDT+ QY+L++ L A N + +VGD DQSI++F GA I
Sbjct: 269 EHYRRRFRHVLVDEYQDTNHAQYTLVRELVGPAGENDAPAELCVVGDADQSIYAFRGATI 328
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
F +D+ + I L +NYRST+ I+ AA+++I+ N R + KN+ T+ G++I
Sbjct: 329 RNILQFEEDYPSATTILLEQNYRSTQTILSAANAVIERNESR-RPKNLWTNAGSGARITG 387
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN- 641
E + F+ D+I G A G +A+ YR +VF+ F +P+
Sbjct: 388 YVADTEHDEAQFVADEIDRLTDKGDAKA---GDVAVFYRTNAQSRVFEEIFIRVGLPYKV 444
Query: 642 IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
+ GV FY +K VR ++A LR D P RR+ + ++ R ID +S
Sbjct: 445 VGGVRFYERKEVRDVLAYLRVLANPEDTVPLRRILN---VPKRGIGDRAEAMIDALSMRE 501
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
K SF A + A G RS R L +E + +V + V+ +V
Sbjct: 502 KISFPQALRRVDEA--YGMAARSSNAVKRFNTL-MEELRTIVESGAGPAVVLEAVLERT- 557
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
YL E +A D +D LQ L A +F +
Sbjct: 558 -GYLAELQASTD-------PQDETRIENLQELAAVALEFEQERGEEEGA----------- 598
Query: 822 INVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
L F++ ++ +++ + D +TL T+H +KGLE+ +VF+ + P +
Sbjct: 599 -GTLAEFLEKVALVADSDQIPDEDEDGSGVITLMTLHTAKGLEFPVVFLTGLEDGVFPHM 657
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSRFLKEIPH 937
G E +EEERRL YV +TRAR++L++ M + W PSRFL+EIP
Sbjct: 658 RAL-GQTKE----LEEERRLAYVGITRARERLYLTRAAMRSAWGQPSYNPPSRFLEEIPE 712
Query: 938 -HL 939
HL
Sbjct: 713 AHL 715
>gi|339017623|ref|ZP_08643774.1| DNA helicase II UvrD/Rep [Acetobacter tropicalis NBRC 101654]
gi|338753335|dbj|GAA07078.1| DNA helicase II UvrD/Rep [Acetobacter tropicalis NBRC 101654]
Length = 743
Score = 238 bits (606), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 209/743 (28%), Positives = 326/743 (43%), Gaps = 124/743 (16%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTT 288
YL LN +Q A PLL++AG G+GK P ILA+TFT
Sbjct: 22 YLARLNPEQ-RTAIETTDGPLLVLAGAGTGKTRVLTTRFAHILLTGRAKPWQILAVTFTN 80
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA EMR+RIG I+G+ A+ L + TFH+ ++ R HAE + T F I Q
Sbjct: 81 KAAREMRERIGFILGEP-AEGLWLGTFHALCARMLRRHAEYVGLTHSFTILDTDDQ---- 135
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
+RLL+ +++ RI G G + +++
Sbjct: 136 ---LRLLK--QVMEPWRIDIKRWPAPGLLGVI-----------------------QRWKD 167
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
G+ + + ++F D AI Y LR NA D+ DL+ ++L T P+V
Sbjct: 168 RGLTPERVTDTEDSDF---ADGHARAIYAAYQTRLRQLNACDFGDLMLHVTEILRTRPDV 224
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILA----SHNRITIVGDDDQSIFSFNGADISG 524
+Y ++ I+VDE+QDT+ +QY L++LA + + I VGDDDQSI+S+ GA++
Sbjct: 225 LDQYHRLFRYILVDEYQDTNTVQYLWLRLLAKRSGAPSNICCVGDDDQSIYSWRGAEVEN 284
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQT--DNSHGSKIII 582
F KDF + +RL RNYRST+ I+ AA+ LI HN +R K +++ +++ G K+ +
Sbjct: 285 ILRFEKDFPGAQIVRLERNYRSTQHILGAAAGLIAHNGERLG-KTLRSGKEDARGEKVTV 343
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI 642
+ DA+ + D + + G S +AIL R + F+ + +P+ I
Sbjct: 344 TGVWDSDAEARAVCDAAEKFKAQG----HSLAEMAILVRAGFQTRAFEERLVQIGLPYRI 399
Query: 643 -HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID--HIDKIST 699
G+ FY + +R +A +R DD + R+ KR + + K
Sbjct: 400 VGGLRFYERAEIRDALAYMRAVHQPADDLAFERIINT--------PKRGVGPAALQKFHA 451
Query: 700 IRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANM 759
+ + + G K Q RK+L L ++ RE + AV
Sbjct: 452 AARAREVPLSAGTQALLTEGGVKGKMADQVRKLLDVLSTTRDILAREGHVVAV------- 504
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
++LLE+ +D E L+ L+ + DF
Sbjct: 505 ---EHLLEESGYLDMWRNDRSPEAPGRLENLKELVRALADF------------------- 542
Query: 820 GCINVLKAFIDYISERETEHFRTQRHD---NENSVTLTTIHQSKGLEWDIVFVAKANETE 876
L F+++++ HD E ++L T+H +KGLE+DIVF+ E
Sbjct: 543 ---GTLGEFLEHVA-------LVMEHDENAGEAKLSLMTLHGAKGLEFDIVFLPGWEEGV 592
Query: 877 IPLVHEFNGAVNEKG-TSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFL 932
P ++E G +EEERRL YV +TRARK I + + ANWQ PSRFL
Sbjct: 593 FP----SQRTLDEGGLKGLEEERRLAYVGITRARKHALIYHAGSRRIYANWQPSMPSRFL 648
Query: 933 KEIPHHLREVQAEQSVQDQHENI 955
E+P Q E + Q + N+
Sbjct: 649 DELPEEHVARQNEGATQRRGLNL 671
>gi|118619792|ref|YP_908124.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium ulcerans Agy99]
gi|118571902|gb|ABL06653.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium ulcerans Agy99]
Length = 769
Score = 238 bits (606), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 210/737 (28%), Positives = 341/737 (46%), Gaps = 109/737 (14%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFT 287
+ ++ LN QQ +A + S PLLIVAG GSGK G+ ILA+TFT
Sbjct: 10 QLVEGLNPQQRQAVVHEGS-PLLIVAGAGSGKTAVLTRRIAYLIAARGVGVGQILAITFT 68
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRR 346
AA+E+R+R+ S+VG AK + +STFHS +++ R+ A ++ S F IY RR
Sbjct: 69 NKAAAEVRERVVSLVG-GRAKYMWVSTFHSTCVRILRNQAALIKGLNSNFSIYDADDSRR 127
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
+ +++ + L +KR S +LT A + N ++ + L +
Sbjct: 128 LL----QMIGRDMGLDIKRYSPRLLTN--------AISNLKNELIDPDRAVSDLSE---- 171
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
D D+A+ AE+++ LR+ NALD+ DLI +V +L FP
Sbjct: 172 --DSDDLARTVASVYAEYQRR---------------LRAANALDFDDLIGETVGILQAFP 214
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-----------RITIVGDDDQSIF 515
++ Y+ ++ ++VDE+QDT+ QY L++ L ++ +VGD DQSI+
Sbjct: 215 DIAGHYRRRFRHVLVDEYQDTNHAQYVLVRELVGRGSEDEPGDVPPAQLCVVGDADQSIY 274
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I + F +D+ + I L +NYRST+ I+ AA+S+I N R + K + TD
Sbjct: 275 AFRGATIRNIEDFERDYPDATTILLEQNYRSTQNILSAANSVISRNSGRRE-KRLWTDAG 333
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G I+ NE + F+ ++I A +Y +A+ YR S + + F
Sbjct: 334 AGELIVGYVADNEHDEARFVAEEIDALAERDE---ITYSDVAVFYRTNNSSRSLEEVFIR 390
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
IP+ + GV FY +K +R I+A LR D RR+ ++ + D
Sbjct: 391 AGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSMRRILNT-------PRRGIGDRA 443
Query: 695 DKISTIRKCSFISAACDIFGAKISGTF----KRSQLTQGRKVLLTLEMISKLVRREPSIS 750
+ + + + D A G R++ V L E+ +L E +
Sbjct: 444 EACVAVYAENTGAGFSDALVAAAEGKVPMLNSRAEKAIAGFVELLDELRGRLDSSEGDVG 503
Query: 751 AVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKE 810
++ +V + LE D +L DN L L++ +F + AA+
Sbjct: 504 ELVEAVLERTGYRRELESST----DPQELARLDN-----LNELVSVAHEFSTDLANAAEP 554
Query: 811 EGNVDQDKKGCINVLKAFIDYIS-----ERETEHFRTQRHDNENSVTLTTIHQSKGLEWD 865
E D + +L AF++ +S + EH VTL T+H +KGLE+
Sbjct: 555 E--PDAEDVPDTGMLAAFLERVSLVADTDDIPEH-------GAGVVTLMTLHTAKGLEFP 605
Query: 866 IVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW-- 923
+VFV + P + + T + EERRL YV +TRAR++L++ ++ ++W
Sbjct: 606 VVFVTGWEDGMFPHMRALDDP-----TELSEERRLAYVGITRARQRLYLSRAIVRSSWGQ 660
Query: 924 QLLQP-SRFLKEIPHHL 939
+L P SRFL+EIP L
Sbjct: 661 PMLNPESRFLREIPQEL 677
>gi|339442753|ref|YP_004708758.1| hypothetical protein CXIVA_16900 [Clostridium sp. SY8519]
gi|338902154|dbj|BAK47656.1| hypothetical protein CXIVA_16900 [Clostridium sp. SY8519]
Length = 742
Score = 238 bits (606), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 221/728 (30%), Positives = 346/728 (47%), Gaps = 113/728 (15%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTF 286
SKY LN +Q EA PLLI+AG GSGK G++P +ILA+TF
Sbjct: 2 SKY-DMLNPEQREAVFY-TEGPLLILAGAGSGKTRVLTHRAAYLIEEKGVNPYHILAITF 59
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR 346
T AA EMR+RI +VG A+ + +STFHS +++ R + +++ + F IY Q+
Sbjct: 60 TNKAAGEMRERIDDMVGFG-AESIWVSTFHSCCVRILRRYIDRIGYDNNFSIYDADDQKH 118
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
+ E V+ L I+T M RA +NA+ S + +L ++
Sbjct: 119 VMKEIVKRLN---------INTKMYKE-------RA---FLNAI---SSAKDELIGPEEY 156
Query: 407 E-RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+ R G D+ K E A + Y +LR NALD+ DLI V+LL
Sbjct: 157 KSRTGGDLPK--------------EQTARVYREYQEVLRKNNALDFDDLIFKCVELLQKD 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISG 524
P+V + YQ+ ++ I+VDE+QDT+ Q+ L+++LA R + +VGDDDQSI+ F GA+I
Sbjct: 203 PQVLESYQERFQYIMVDEYQDTNTAQFQLIRLLAGKYRNLCVVGDDDQSIYRFRGANIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF + + + K I+L +NYRST+ I++AA+++I++N R + K + T+ G K+ ++
Sbjct: 263 ILSFEEQYPDAKVIKLEQNYRSTQNILDAANAVIKNNRGR-KDKALWTEEQGGEKVHFQQ 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
+ FI + G I YG A+LYR ++ + F R IP+ I
Sbjct: 322 FETAYEEADFIAGDVARLERKG---IFDYGESAVLYRTNAQSRLLEEKFVSRNIPYRIIG 378
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID--HIDKISTIR 701
GV FY +K ++ I+A L+T G DD +R+ KR I I+++ T
Sbjct: 379 GVNFYSRKEIKDILAYLKTIDNGSDDLAVKRIINI--------PKRGIGATSINRVQTYA 430
Query: 702 KCSFIS--AACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANM 759
IS AC + Q+ + K ++ L+R + A I +
Sbjct: 431 DEQGISFFEACRM----------TEQIPKIGKAAGKIQGFVNLIR---VLRAEIPELGIQ 477
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLR-SVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
+ LLE+ V+ D +E+ D R + L++ + D+ T A+E
Sbjct: 478 RVTEKLLEETGYVE-DLKAEHDEEADARIENIDELISKIADYEDT----AEEP------- 525
Query: 819 KGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
L F+D +S + D +T +H +KGLE+ V++A + P
Sbjct: 526 -----TLGEFLDEVS--LVADIDSLEDDKNYVTLMT-LHSAKGLEFPNVYMAGMEDGLFP 577
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
+ + T +EEERRL YV +TRA+K+L + M Q + SRFLKE+
Sbjct: 578 ---SYMTITADDPTELEEERRLCYVGITRAKKRLTMTAARTRMQRGEMQYNRTSRFLKEV 634
Query: 936 PHHLREVQ 943
P L E Q
Sbjct: 635 PEELLEGQ 642
>gi|418471479|ref|ZP_13041295.1| ATP-dependent DNA helicase II [Streptomyces coelicoflavus ZG0656]
gi|371547925|gb|EHN76270.1| ATP-dependent DNA helicase II [Streptomyces coelicoflavus ZG0656]
Length = 829
Score = 238 bits (606), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 209/727 (28%), Positives = 325/727 (44%), Gaps = 109/727 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LN+ Q AA +PLLIVAG GSGK + P ILA+TFT
Sbjct: 70 LEGLNENQ-RAAVVHSGSPLLIVAGAGSGKTRVLTHRIAHLLAERSVHPGQILAITFTNK 128
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A + + TFHS +++ R +++L TS F IY +R +
Sbjct: 129 AAGEMKERVEQLVGP-RANAMWVMTFHSACVRILRRESKRLGFTSSFSIYDAADSKRLMA 187
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R L+ L KR F SF + + + +
Sbjct: 188 LVCRDLD----LDPKR---------------------------FPPKSFS-AKISNLKNE 215
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+D + + F K + A Y LR NALD+ DLI +V LL FP+V
Sbjct: 216 LIDEEDFAAQAADGFEKTLAQAYAM----YQSRLREANALDFDDLIMTTVNLLRAFPDVA 271
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILAS----------------HNRITIVGDDDQS 513
+ Y+ ++ ++VDE+QDT+ QY+L++ L + +VGD DQS
Sbjct: 272 EHYRRRFRHVLVDEYQDTNHAQYALVRELVGVPSEHPVDVPPEAEVPPAELCVVGDADQS 331
Query: 514 IFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTD 573
I++F GA I F +D+ + I L +NYRST+ I+ AA+++I+ N R + KN+ T+
Sbjct: 332 IYAFRGATIRNILQFEEDYPDATTILLEQNYRSTQTILSAANAVIERNESR-RPKNLWTN 390
Query: 574 NSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
G++I E + F+ D+I G A G +A+ YR +VF+ F
Sbjct: 391 QGSGAQITGYVADTEHDEAQFVADEIDRLTDAGEAKA---GDVAVFYRTNAQSRVFEEVF 447
Query: 634 RERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID 692
+P+ + GV FY +K VR ++A LR D P RR+ + ++ R
Sbjct: 448 IRTGLPYKVVGGVRFYERKEVRDVLAYLRVLANPEDSVPLRRILN---VPKRGIGDRAEA 504
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV 752
ID +S + SF A + A G RS R L +E + +V + V
Sbjct: 505 MIDALSQRERISFPQALRRVDEAY--GMAARSANAVKRFNTL-MEDLRTIVESGAGPATV 561
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
+ ++ YL E +A D +D LQ L A +F E+
Sbjct: 562 LEAILERT--GYLAELQASTD-------PQDETRIENLQELAAVALEF---------EQE 603
Query: 813 NVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKA 872
+ ++ G L F++ ++ D + VTL T+H +KGLE+ +VF+
Sbjct: 604 RAEDEEAGT---LADFLEKVALVADSDQIPDEEDGDGVVTLMTLHTAKGLEFPVVFLTGM 660
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPS 929
+ P + A +EEERRL YV +TRAR++L++ + + W PS
Sbjct: 661 EDGVFPHMRALGQA-----KELEEERRLAYVGITRARERLYLTRSTLRSAWGQPSYNPPS 715
Query: 930 RFLKEIP 936
RFL+EIP
Sbjct: 716 RFLEEIP 722
>gi|411002472|ref|ZP_11378801.1| ATP-dependent DNA helicase [Streptomyces globisporus C-1027]
Length = 812
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 214/723 (29%), Positives = 326/723 (45%), Gaps = 102/723 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN +Q AA +PLLIVAG GSGK G P ILA+TFT
Sbjct: 67 LDGLNTEQ-RAAVVHAGSPLLIVAGAGSGKTRVLTHRIAHLLAERGTHPGQILAITFTNK 125
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A + + TFHS +++ R ++KL TS F IY +R +
Sbjct: 126 AAGEMKERVEQLVGP-RANAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMA 184
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R L+ L KR T + + + +
Sbjct: 185 LVCRDLD----LDPKRYPPKSFT----------------------------AKVSNLKNE 212
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+D +G+ F K + A Y LR NALD+ D+I +V LL FP+V
Sbjct: 213 LIDEETFAGQAADGFEKTLAQAYAL----YQARLREANALDFDDIIMTTVHLLQAFPDVA 268
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQIL---ASHN----RITIVGDDDQSIFSFNGADI 522
+ Y+ ++ ++VDE+QDT+ QY+L++ L A N + +VGD DQSI++F GA I
Sbjct: 269 EHYRRRFRHVLVDEYQDTNHAQYTLVRELVGPAGENDAPAELCVVGDADQSIYAFRGATI 328
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
F +D+ + I L +NYRST+ I+ AA+++I+ N R + KN+ T+ G++I
Sbjct: 329 RNILQFEEDYPSATTILLEQNYRSTQTILSAANAVIERNESR-RPKNLWTNAGSGARITG 387
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN- 641
E + F+ D+I G A G +A+ YR +VF+ F +P+
Sbjct: 388 YVADTEHDEAQFVADEIDRLTDAGDAKA---GDVAVFYRTNAQSRVFEEIFIRVGLPYKV 444
Query: 642 IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
+ GV FY +K VR ++A LR D P RR+ + ++ R ID +S
Sbjct: 445 VGGVRFYERKEVRDVLAYLRVLANPEDTVPLRRILN---VPKRGIGDRAEAMIDALSMRE 501
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
K SF A + A G RS R L +E + +V + V+ +V
Sbjct: 502 KISFPQALRRVDEA--YGMAARSSNAVKRFNTL-MEELRTIVESGAGPAVVLEAVLERT- 557
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
YL E +A D +D LQ L A +F +
Sbjct: 558 -GYLAELQASTD-------PQDETRIENLQELAAVALEFEQERGEEEGA----------- 598
Query: 822 INVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
L F++ ++ +++ + D +TL T+H +KGLE+ +VF+ + P +
Sbjct: 599 -GTLAEFLEKVALVADSDQIPDEDEDGSGVITLMTLHTAKGLEFPVVFLTGLEDGVFPHM 657
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSRFLKEIPH 937
G E +EEERRL YV +TRAR++L++ M + W PSRFL+EIP
Sbjct: 658 RAL-GQTKE----LEEERRLAYVGITRARERLYLTRAAMRSAWGQPSYNPPSRFLEEIPE 712
Query: 938 -HL 939
HL
Sbjct: 713 AHL 715
>gi|418324725|ref|ZP_12935955.1| ATP-dependent DNA helicase PcrA [Staphylococcus pettenkoferi
VCU012]
gi|365224998|gb|EHM66253.1| ATP-dependent DNA helicase PcrA [Staphylococcus pettenkoferi
VCU012]
Length = 734
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 209/726 (28%), Positives = 348/726 (47%), Gaps = 121/726 (16%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
+ND+Q +A PLLI+AG GSGK +SP NILA+TFT AA
Sbjct: 8 MNDEQSQA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAR 66
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ ++I+ V
Sbjct: 67 EMKERVEQLVGEE-AQVIWMSTFHSMCVRILRRDADRIGIERNFTILDPTDQK-SVIKDV 124
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
EN + K+ M +M A + N +
Sbjct: 125 LKTEN---IDSKKFEPRM--------FMGAISNLKNEL---------------------- 151
Query: 413 VAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
KTP + +K +++ A + + Y L ALD+ DLI ++ L PEV
Sbjct: 152 ------KTPEDAQKEASDYMEQMVATVYKGYQRQLFRNEALDFDDLIMTTIHLFERVPEV 205
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDS 527
+ YQ+ ++ I VDE+QDT+ QY+L+ +LA + +VGD DQSI+ + GADI S
Sbjct: 206 LEYYQNKFQYIHVDEYQDTNKAQYTLVNMLAKKFKNLCVVGDSDQSIYGWRGADIQNILS 265
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F +D+ K I L +NYRST+ I+ AA+ +I++N +R + K + T N G KI E
Sbjct: 266 FEEDYPEAKTIYLEQNYRSTKTILNAANEVIKNNSER-KPKGLWTANVEGEKIHYYEATT 324
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF-NIHGVA 646
E + +++ +I++ G Y +AILYR +V + +F + IP+ + G
Sbjct: 325 EKDETEYVVKEIMKQRKKGK----DYKDMAILYRTNAQSRVLEESFMKSNIPYVMVGGQK 380
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIRKCS 704
FY +K ++ +++ LR DD +R+ KR I ++KI + S
Sbjct: 381 FYDRKEIKDLLSYLRVIANSNDDISLQRIINV--------PKRGIGPSSVEKIQKYAQQS 432
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREP--SISAVITSVANMVPQ 762
IS + G K+ +TQ + + +MI+ L++ + IS ++ V
Sbjct: 433 DISMFDALAEVDFIGLSKK--VTQ--ECIHFYDMINNLIKEQEFLEISEIVEEVLTKSGY 488
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
+ +LE+ ++ RS L+ ++ +F+S T +EE +++ + I
Sbjct: 489 REMLEKAQTIES------------RSRLE----NIDEFMSVP-TNYEEETPLEE--QSLI 529
Query: 823 NVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
N L + + I E E EN VTL T+H +KGLE+ IVF+ E+ P +
Sbjct: 530 NFLTDLSLVADIDEAEI----------ENGVTLMTMHSAKGLEFPIVFIMGMEESIFPHI 579
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPH 937
++ ++EERR+ YVA+TRA ++L++ + M+ Q SRF+ EIP
Sbjct: 580 RAIK---SDDDHEMQEERRIAYVAITRAEEELYMTHATSRMLYGRSQSNMVSRFINEIPE 636
Query: 938 HLREVQ 943
L +V+
Sbjct: 637 GLLDVE 642
>gi|255324817|ref|ZP_05365930.1| ATP-dependent DNA helicase PcrA [Corynebacterium tuberculostearicum
SK141]
gi|255298117|gb|EET77421.1| ATP-dependent DNA helicase PcrA [Corynebacterium tuberculostearicum
SK141]
Length = 841
Score = 237 bits (605), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 200/738 (27%), Positives = 339/738 (45%), Gaps = 91/738 (12%)
Query: 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAA 290
+ LN QQLEA +PLLIVAG GSGK G++P ILA+TFT A
Sbjct: 43 EGLNPQQLEAVT-HSGSPLLIVAGAGSGKTAVLTRRIAYLMRHRGVNPWEILAITFTNKA 101
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAII 349
A+EM++R+G +VG A+ + +STFHS +++ R +A+ + + F IY RR +
Sbjct: 102 AAEMKERVGGLVGP-VAERMWVSTFHSICVRILRQNAQLVPGLNTNFTIYDGDDARRLL- 159
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++ + L +K+ + +L + L S+ + Q K
Sbjct: 160 ---SMIAKDMQLDLKKYTPRVLAN---------QISNHKNELIGPESALEKAQQTK---- 203
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
P E A + Y LR+ NA+D+ DLI V++ + +V
Sbjct: 204 ----------NPFETTV------AQVYAEYQRRLRAANAVDFDDLIGEVVRIFTQHQQVV 247
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRIT-------IVGDDDQSIFSFNGADI 522
Y+ +K +++DE+QDT+ QY+L+ L + +VGD DQSI++F GA I
Sbjct: 248 DFYRRRFKHVLIDEYQDTNHAQYALVAALVGRGELGPDAPELCVVGDSDQSIYAFRGATI 307
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
F +D+ I L +NYRST+ I+ AA+++I N R + KN+ T + G +I+
Sbjct: 308 RNIQEFERDYPQAHTILLEQNYRSTQTILNAANAVIAKNENRRE-KNLWTAHGEGEQIVG 366
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN- 641
NE + FI +I A G SY IA++YR + + + F IP+
Sbjct: 367 YVADNEHDEARFIASEIDSLADKG----RSYSDIAVMYRTNNASRALEDIFIRSGIPYKV 422
Query: 642 IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
+ G FY ++ +R ++A LR D RR+ + ++ + HI +
Sbjct: 423 VGGTRFYERREIRDMVAYLRILDNPDDTVSLRRIIN---VPKRAIGDKAQGHIALHAENH 479
Query: 702 KCSFISAACDIFGAKISGTFKRS--------QLTQGRKVLLTLEMISKLVRREPSISAVI 753
SF A D+ + G R+ + +G + + + V +P + ++
Sbjct: 480 GISFGKALADVPRGDVPGLGTRAINAVTKFNDMMEG--IRNQIPSMRDEVTGQPDLGELL 537
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
+++ + K LE D G L+ N+L SV + ++ + L+ A +
Sbjct: 538 SAILDATGYKAELENSN--DPQDGARLDNLNELVSVAREFTSEAANQLAASGADAVDPSE 595
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIHQSKGLEWDIVFVAKA 872
+ ++ + L+AF++ +S Q D+E VT+ T+H +KGLE+ +VF+
Sbjct: 596 LVEEGEAAPGSLQAFLEKVSLVADAD---QIPDSETGVVTMMTLHTAKGLEFPVVFLTGW 652
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW--QLLQP-S 929
+ + P + + EERRL YV +TRAR++L++ ++ + W + P S
Sbjct: 653 EDGQFPHMRSLGDP-----KELSEERRLAYVGITRAREQLYLTRAILRSAWGNPVTNPAS 707
Query: 930 RFLKEIPHHLREVQAEQS 947
RFL E+P L + E S
Sbjct: 708 RFLGEVPEDLINWRREDS 725
>gi|89097085|ref|ZP_01169976.1| PcrA [Bacillus sp. NRRL B-14911]
gi|89088465|gb|EAR67575.1| PcrA [Bacillus sp. NRRL B-14911]
Length = 746
Score = 237 bits (605), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 222/721 (30%), Positives = 352/721 (48%), Gaps = 104/721 (14%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFT 287
K L LN QQ + A PLLI+AG GSGK G++P NILA+TFT
Sbjct: 7 KLLNGLNAQQ-QNAVKATDGPLLIMAGAGSGKTRVLTHRIGYLMVEKGVNPYNILAITFT 65
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EMR+RI +++G A A ++ ISTFHS +++ R +++ F I Q+ +
Sbjct: 66 NKAAREMRERIQNMMGGA-ADDIWISTFHSMCVRILRRDIDRIGFNRNFTILDTTDQQ-S 123
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
+I+A+ EK L K+ RA + S+SS K N+
Sbjct: 124 VIKAIL---KEKNLDPKKYDP------------RA--------ILGSISSAK----NEL- 155
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
D + AKA+G F ++I + + Y LR ALD+ DLI +++L PE
Sbjct: 156 IDPEEYAKAAG---GYF----EQIASDVYTEYQRRLRKNQALDFDDLIMTTIQLFQRVPE 208
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFD 526
V + YQ ++ I VDE+QDT+ QY L++++A + +VGD DQSI+ + GADI+
Sbjct: 209 VLEYYQRKFQYIHVDEYQDTNRAQYMLVKLMADRFKNLCVVGDSDQSIYRWRGADIANIL 268
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
SF KD+ N + I L +NYRST+ I+ AA+ +I N+ R + KN+ T+N+ G+K+
Sbjct: 269 SFEKDYQNARTILLEQNYRSTKRILLAANEVIAKNLNR-KAKNLWTENAEGNKLFHYRAD 327
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGV 645
+E + F+ KI E +G Y IAILYR +V + + I ++I G+
Sbjct: 328 SEQGEGQFVAGKIKEMVDSGKR---KYSEIAILYRTNAQSRVMEEVLLKSNIEYSIVGGI 384
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSF 705
FY +K ++ I+A LR DD +RV + ++ +D I + + +
Sbjct: 385 KFYDRKEIKDILAYLRLIANPDDDISLQRVIN---VPKRGIGSGSVDKIANFAQMHDMTM 441
Query: 706 ISA--ACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
A A D+ G +S ++ T+ R ++ + E + + + SV +V +
Sbjct: 442 YQALDALDLIG--LSPKITKAA-TEFRDLIRSYEQMQEYL-----------SVTELVEE- 486
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
+LE+ D +L + + + Q L ++ +FLS T E+G+ D+ +
Sbjct: 487 -VLEKSGYRD-----MLKAEKSIEA--QSRLENIDEFLSV--TKNFEDGSEDKTLVAFLT 536
Query: 824 VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
L A + I + E + +T +SV L T+H +KGLE+ +VF+ E P
Sbjct: 537 DL-ALVADIDKLEDDGTKT------DSVVLMTLHSAKGLEFPVVFLIGLEEGVFPHSRSL 589
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD---ANWQLLQPSRFLKEIPHHLR 940
+EEERRL YV +TRA ++L+I M + PSRF++EIP L
Sbjct: 590 MEE-----AEMEEERRLAYVGITRAEEELYITNAQMRTLFGRTNMNPPSRFIQEIPADLI 644
Query: 941 E 941
E
Sbjct: 645 E 645
>gi|296393904|ref|YP_003658788.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985]
gi|296181051|gb|ADG97957.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985]
Length = 789
Score = 237 bits (605), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 207/740 (27%), Positives = 320/740 (43%), Gaps = 105/740 (14%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFT 287
+ LQ LN QQ EA + PL I+AG GSGK P ILA+TFT
Sbjct: 6 QILQGLNPQQAEAVV-HLGAPLCIIAGAGSGKTSVITRRVAWLLAEGHARPGEILAITFT 64
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHA-EKLERTSEFLIYGHGQQRR 346
AA E+++R+G++VG E+ +STFHS +L R+ A + F IY +R
Sbjct: 65 NKAAGELKERVGALVG-GRMWEMWVSTFHSSCARLLRAEAGPQAGFDQNFTIYDADDSKR 123
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
+ LE L R ML ++ L A L F L +
Sbjct: 124 LLAMVAEELE----LDTNRFPPRMLAA--KISDLKNELIAPEAALVGVEDPFDLVLGQVY 177
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
R Y L NA+D+ DLI +V+LL T P
Sbjct: 178 RR------------------------------YQERLALANAMDFDDLIMRAVELLQTNP 207
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLL----------QILASHNRITIVGDDDQSIFS 516
E Q ++ ++ ++VDE+QDT+ QY L+ Q+ A + +T+VGD DQSI+
Sbjct: 208 EAAQRWRGRFRHVLVDEYQDTNHAQYVLIRELVGAGAGTQVGAETSALTVVGDSDQSIYR 267
Query: 517 FNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSH 576
F GA I + F +DF N + + L +NYRST+ I+ AA+++I HN R + K + T
Sbjct: 268 FRGATIRNIEEFERDFPNARTVLLEQNYRSTQNILSAANAVIAHNQGRRE-KRLWTQAGD 326
Query: 577 GSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRER 636
G +II +E + +F+ +I E +G +G +A+ YR + +VF+ AF
Sbjct: 327 GQQIIGYVADHEHDEASFVATEITELVRSG----AKHGDVAVFYRTNNASRVFEEAFIRH 382
Query: 637 KIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHID 695
+P+ + G FY ++ VR IIA LR D R+ + R I
Sbjct: 383 AVPYRVVGGQRFYDRREVRDIIAYLRVIANPSDAVSLSRIINT---PRRGLGDRAQAQIA 439
Query: 696 KISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITS 755
+ R +F A G ++ RSQ V + + ++L + ++ ++
Sbjct: 440 AWAGSRGQTFWDACQAAAGGAVAALAARSQRAVADFVAMIAGLRAELAAGDITVGELVAR 499
Query: 756 VANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVD 815
+ +L + DG +L N D + ++Y + AA+E G V
Sbjct: 500 TVERSGYRAVLAD-STDPQDGARLENLDELISVAVEY----------GELVAAREGGPVA 548
Query: 816 QDKKGCINV-------------LKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGL 862
G + V L+ F++ +S + VTL T+H +KGL
Sbjct: 549 DGFAGELRVNLPEADENEGHAKLRDFLEQVSLVADSDRLPEGGSQSGVVTLMTLHTAKGL 608
Query: 863 EWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI---LYVMM 919
E+ +VFV E + P + V + EERRL YV +TRAR++L++ + +
Sbjct: 609 EFPVVFVTGLEEGQFPHLRSLGDPVE-----LAEERRLAYVGITRAREQLYVSRSITRTL 663
Query: 920 DANWQLLQPSRFLKEIPHHL 939
+ PSRFL EIP HL
Sbjct: 664 RGSPMTNPPSRFLLEIPPHL 683
>gi|334136406|ref|ZP_08509873.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. HGF7]
gi|333606076|gb|EGL17423.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. HGF7]
Length = 777
Score = 237 bits (605), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 228/736 (30%), Positives = 345/736 (46%), Gaps = 137/736 (18%)
Query: 245 LQSLNDQQ---LEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTF 286
+Q LN QQ +EA G PLLI+AG GSGK ++P +ILA+TF
Sbjct: 8 VQKLNPQQRKAVEATEG----PLLIMAGAGSGKTRVLTHRIAYLIGAKRVAPWSILAITF 63
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR 346
T AA EMR+R+ +VG +A ++ +STFHS +++ R +++ TS F I G Q
Sbjct: 64 TNKAAREMRERVEQLVG-PSANDIWVSTFHSMCVRILRRDIDRIGFTSNFSILDSGDQLS 122
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
I ++ L KF
Sbjct: 123 VIKTCMKELN--------------------------------------------IDTKKF 138
Query: 407 ERDGMDVAKASGK----TPAEF-RKIGD---EIGAAILENYNGILRSCNALDYHDLISCS 458
E + A ++ K TP F +KIGD + A + Y L+S N+LD+ DLI +
Sbjct: 139 EPKAVQAALSTAKNELITPQRFEQKIGDYFDGLVAKVYTLYQKKLKSNNSLDFDDLIMAT 198
Query: 459 VKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSF 517
++L + PEV YQ+ ++ I VDE+QDT+ QY L Q+LA ++ + +VGD DQSI+ +
Sbjct: 199 IQLFTDVPEVLDFYQNKFRFIHVDEYQDTNRAQYMLCQMLADKSKNLCVVGDSDQSIYRW 258
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GADI+ +F +D+ N I L +NYRST I++AA+ +I +N R + KN+ TD G
Sbjct: 259 RGADITNILNFEEDYPNATTILLEQNYRSTSTILQAANKVIGNNTGR-KAKNLWTDKGEG 317
Query: 578 SKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERK 637
SKI + + +E + FI +I ++ S YG AILYR +V + +
Sbjct: 318 SKIRVYQADSEHDEGYFIAGEINKNV----GSAQKYGDHAILYRTNAQSRVIEEILIKSD 373
Query: 638 IPFNI-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDK 696
IP+ I GV FY +K ++ I+A LR DD RV + ++ +D +
Sbjct: 374 IPYQIVGGVKFYDRKEIKDILAYLRLISNPDDDISLTRVVN---VPKRGIGDTTLDKVAD 430
Query: 697 ISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTL-EMISKLVRREPSISAVITS 755
+ R S + ++ +IS R+ L R+++ L M+ L S++ +
Sbjct: 431 FAARRGISMFAMLDEVESLEISAR-TRNALADFREMIHNLHRMVDYL-----SVTELTEK 484
Query: 756 VANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVD 815
V M +Y +E L +N L S + L ++ +FLS T+ E N D
Sbjct: 485 VLEM--SQYRME------------LQRENTLES--KSRLENIDEFLSV--TSEFETRNED 526
Query: 816 QDKKGCIN--VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+ + L A ID + + E ++SV L T+H +KGLE+ +VF+
Sbjct: 527 KSLVAFLTDLALIADIDTMDKDEGP---------QDSVVLMTMHSAKGLEFPVVFIIGME 577
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLL 926
E P H N +EEERRL YV +TRA + LF+ L+ AN
Sbjct: 578 EGVFP--HSRAATDN---EELEEERRLAYVGITRAEENLFLSCARMRMLFGRTSAN---- 628
Query: 927 QPSRFLKEIPHHLREV 942
PSRFLKEIP L E+
Sbjct: 629 PPSRFLKEIPQELMEI 644
>gi|163788705|ref|ZP_02183150.1| ATP-dependent DNA helicase II [Flavobacteriales bacterium ALC-1]
gi|159875942|gb|EDP70001.1| ATP-dependent DNA helicase II [Flavobacteriales bacterium ALC-1]
Length = 776
Score = 237 bits (604), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 209/729 (28%), Positives = 329/729 (45%), Gaps = 108/729 (14%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTT 288
KYL LND QL A P++I+AG GSGK G+ NILA+TFT
Sbjct: 3 KYLSQLNDAQL-APTLQKDGPMIIIAGAGSGKTRVLTYRIAYLMAQGVDAFNILALTFTN 61
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA EM+ RI IVG AK L + TFHS ++ R L S F IY ++ +
Sbjct: 62 KAAKEMKGRIADIVGDGEAKNLWMGTFHSVFAKILRFEGHHLGFPSNFTIYDTQDSQKLL 121
Query: 349 IEAVRLLENEKIL-----VVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQY 403
++ + +K + V RIS+ + SL + A
Sbjct: 122 GSIIKEMGLDKDIYKTKQVYSRISS-----------YKNSLITVKAY------------- 157
Query: 404 NKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
F+ + A A + P ++GD I + Y A+D+ DL+ + +LL+
Sbjct: 158 --FKNPELMEADAMARRP----RLGD-----IYKEYVDRCFKAGAMDFDDLLLRTNELLT 206
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADI 522
FP V +YQ+ ++ I+VDE+QDT+ QY +++ L+ I +VGDD QSI++F GA+I
Sbjct: 207 RFPNVLAQYQNRFRYILVDEYQDTNHSQYLIVRALSDRFQNICVVGDDAQSIYAFRGANI 266
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
+ +F+KD+ K RL +NYRST+ IV AA+S+I+HN + K V T N G K+ +
Sbjct: 267 NNILNFQKDYDGVKVYRLEQNYRSTKNIVGAANSVIEHNKTKLD-KIVWTANDIGEKVKV 325
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI 642
+ + ++ I E N + A+LYR + + A R+R IP+ I
Sbjct: 326 HRSLTDGDEGRYVASTIWETKMNKQLHNSDF---AVLYRTNAQSRAIEDALRKRDIPYRI 382
Query: 643 HG-VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
+G ++FY++K ++ + A LR L D+ E KRVI++ +
Sbjct: 383 YGGLSFYQRKEIKDVTAYLRLILNSADE---------------EALKRVINYPARGIGQT 427
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ A ++ G I K V + + +K R+ V N
Sbjct: 428 TVDRLVVAANVTGRTIYDVIKDID-----NVTININNGTKNKLRDFVTLIESYKVMNQNA 482
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSV-----LQYLLADVTDFLSTKFTAAKEEGNVDQ 816
+ L + + LN+D V +Q LL + DF+ EG ++
Sbjct: 483 NAFDLAEHVTKTSGLIRELNKDGTPEGVTRMDNVQELLNGIKDFV---------EGQIEL 533
Query: 817 DKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
G + L F++ ++ + D ++ V L TIH +KGLE+ VF+ E
Sbjct: 534 ADAG--DSLAEFLEDVAL--ATDLDGDKGDPDH-VALMTIHLAKGLEFGHVFIVGMEEDL 588
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLK 933
P N + +EEERRL YVA+TRA K+ ++ Y + W L +PSRF++
Sbjct: 589 FPSAMSMNTR-----SELEEERRLFYVALTRAEKQAYLTYTLSRYRWGKLIDAEPSRFIE 643
Query: 934 EIPHHLREV 942
EI ++
Sbjct: 644 EIDEEFVDI 652
>gi|327314684|ref|YP_004330121.1| ATP-binding protein [Prevotella denticola F0289]
gi|326946329|gb|AEA22214.1| putative ATP-dependent helicase PcrA [Prevotella denticola F0289]
Length = 842
Score = 236 bits (603), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 212/723 (29%), Positives = 343/723 (47%), Gaps = 105/723 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
L +LN+ Q AA + P L++AG GSGK G+SP NILA+TFT A
Sbjct: 11 LSALNESQ-RAAVEYCTGPSLVIAGAGSGKTRVLTYKIAYLLNKGLSPWNILALTFTNKA 69
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQR---RA 347
A EM++RI I A+ + TFHS ++ R + + + F IY R ++
Sbjct: 70 AREMKERIARITTAGEAQRFYMGTFHSIFSRILRREGQAVGFSGNFTIYDESDSRSLIKS 129
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
I++A+ L E Y +S+ F SM+ L +++
Sbjct: 130 IVKALGLDEK--------------------AYKPSSVHS-----FISMAKNHLITADEYA 164
Query: 408 RDGMDVAK-ASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
D + + + PA I + Y R NA+D+ D++ + L
Sbjct: 165 EDRAATERDRNARMPAVH---------LIYKAYEARCRQANAMDFDDILLYTYLLFRDNR 215
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGF 525
E+ ++Y ++ I+VDE+QDT+ Q +++ +LA +H RI +VGDD QSI+SF GA+I
Sbjct: 216 EIREKYGQQFEYILVDEYQDTNYAQVNIISLLAETHRRICVVGDDYQSIYSFRGANIDNI 275
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
FR F + + +L RNYRST+ IV+AA+SL++HN ++ K V + + G K++ K C
Sbjct: 276 LDFRNKFTDARLFKLERNYRSTQFIVQAANSLMKHNERQIP-KEVYSKEAAGDKVLYKPC 334
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHG 644
++ D + A + L+ +G + C Y + A+LYR + F+ FR++ IP+ I G
Sbjct: 335 YS-DREEAMAVAAELKRIRHGDS--CDYDNFAVLYRTNAQSRPFEDEFRKQGIPYKIIGG 391
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCS 704
++FY++K ++ IIA R D+ +RRV R I + + I C+
Sbjct: 392 LSFYQRKEIKDIIAYFRLVANPDDEEAFRRVINY--------PARSIGNT-TVQKIIACA 442
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLT--LEMISKLVRREPSISAVITSVANMVPQ 762
A ++ +S + +G L+ +IS +++ A +T+ + +
Sbjct: 443 -QQHAVSLWETILSPAEYGLDVNKGTLAKLSSFRMLISSFIKK-----AALTNAYELGCE 496
Query: 763 KYLLEQRAV-VDFDGGKLLNEDNDL--RSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
++E+ V D G NE DL R L+ ++ + F+ T +EEG +
Sbjct: 497 --IIEKSGVGADIRSG---NEPEDLARRENLEEFMSAMQGFVDT----GREEGREE---- 543
Query: 820 GCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
NV A DY+ E + D+ VTL TIH +KGLE+ VFV E P
Sbjct: 544 ---NVYLA--DYLQEVALYTDADKEEDDVPKVTLMTIHAAKGLEFPTVFVVGLEENIFPS 598
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSRFLKEIP 936
+ +++G +EEERRLLYVA+TRA + + + +Q PSRFL +I
Sbjct: 599 PMS---SGSKRG--IEEERRLLYVAITRAERHCILTNAKNRFRYGTMQVDNPSRFLNDID 653
Query: 937 HHL 939
L
Sbjct: 654 SSL 656
>gi|304405679|ref|ZP_07387338.1| ATP-dependent DNA helicase PcrA [Paenibacillus curdlanolyticus YK9]
gi|304345718|gb|EFM11553.1| ATP-dependent DNA helicase PcrA [Paenibacillus curdlanolyticus YK9]
Length = 801
Score = 236 bits (603), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 219/722 (30%), Positives = 341/722 (47%), Gaps = 109/722 (15%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAAS 292
LN QQ +AA PLLI+AG GSGK ++P +ILA+TFT AA
Sbjct: 15 LNPQQ-QAAVQATEGPLLIMAGAGSGKTRVLTHRIAYLIEKKRVAPWSILAITFTNKAAR 73
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM+DR+ +VG + ++ +STFHS +++ R ++ TS F I G Q + +
Sbjct: 74 EMQDRVAKLVGP-SGSDIWVSTFHSMCVRILRKDISRIGFTSSFSILDSGDQ----LSVI 128
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
R + E+ + K+I + ++SS
Sbjct: 129 RTIMKEQNIDTKKIEPKTIQA--------------------AISS--------------- 153
Query: 413 VAKASGKTPAEFR-KIGD---EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
AK +P F K+GD +I A + E Y LR+ N+LD+ DLI ++KL + P+V
Sbjct: 154 -AKNELLSPERFAAKVGDYFEQIAANVYEQYQKRLRANNSLDFDDLIMTTIKLFTDEPDV 212
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDS 527
Q YQ+ ++ + VDE+QDT+ QY L ++LA H+ I +VGD DQSI+ + GADI+ +
Sbjct: 213 LQFYQNKFRFLHVDEYQDTNRAQYMLCRMLADKHHNICVVGDSDQSIYRWRGADITNILN 272
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F +D+ K I L +NYRST I+ AA+++I +N R + K + TD G I I + +
Sbjct: 273 FEQDYPESKTILLEQNYRSTSNILNAANAVIGNNTGR-KPKRLWTDQGAGDAISIYQADS 331
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVA 646
E + F+ +I +H G Y AILYR +V + + IP+ I GV
Sbjct: 332 EHDEGYFVTGEIGKHYKEG----RKYADHAILYRTNAQSRVIEEILIKSDIPYQIVGGVK 387
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFI 706
FY +K ++ ++A LR DD R+ + ++ + I + + R S
Sbjct: 388 FYDRKEIKDLLAYLRLISNPDDDISLTRIIN---VPKRGIGDTTVGKIAEEAARRGISMH 444
Query: 707 SA--ACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKY 764
+A D FG R+ L Q R +MI+ L R +S + + +Y
Sbjct: 445 AALGTLDEFGGLDVAGKTRAALVQFR------DMITNLTRMVDYLSVTELTEKVLEMSEY 498
Query: 765 LLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINV 824
LE L +N L S + + ++ +FLS T E+ N D+ +
Sbjct: 499 RLE------------LQRENTLES--KARVENIEEFLSV--TLEFEKNNEDKSLVAFLTD 542
Query: 825 LKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
L D S +E E+ + Q ++V L T+H +KGLE+ +VF+ E+ P F
Sbjct: 543 LALIADIDSMNKEEENGQPQ-----DAVVLMTMHSAKGLEFPVVFIIGMEESVFPHSRAF 597
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSRFLKEIPHHLR 940
+EEERRL YV +TRA K+L++L M + PSRFL EIP ++
Sbjct: 598 -----MDNEELEEERRLAYVGITRAEKRLYLLCARMRTLFGRTATNPPSRFLMEIPEDVK 652
Query: 941 EV 942
++
Sbjct: 653 QM 654
>gi|334336285|ref|YP_004541437.1| ATP-dependent DNA helicase PcrA [Isoptericola variabilis 225]
gi|334106653|gb|AEG43543.1| ATP-dependent DNA helicase PcrA [Isoptericola variabilis 225]
Length = 1084
Score = 236 bits (603), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 214/740 (28%), Positives = 342/740 (46%), Gaps = 93/740 (12%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSN-ILAMTFTTA 289
L+ LN QQ AA +PLLIVAG GSGK G + S ILA+TFT
Sbjct: 71 LEGLNPQQ-RAAVVHHGSPLLIVAGAGSGKTRVLTHRIAHLLATGRARSGEILAITFTNK 129
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EMR+R+ +VG +A + +STFHS +++ R A+ L S F IY +R I
Sbjct: 130 AAAEMRERVEQLVGP-SASRMWVSTFHSACVRILRKEAKTLGLRSSFSIYDAADSQRLIT 188
Query: 350 EAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
R L + K + ++ + +++ + S + ER
Sbjct: 189 LVTRELNLDPKKYPARSLANKISDLKNE---------LVDPDTYAQKSGADATEEGWRER 239
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
A+ P EF D + A + Y L +ALD+ D+I +V LL FP V
Sbjct: 240 AARGGGLAAPSVP-EF----DTVLADVYRRYQARLAQAHALDFDDIIMTTVNLLQAFPNV 294
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN------RITIVGDDDQSIFSFNGADI 522
+ Y+ ++ I+VDE+QDT+ QY L++ LA H +T+VGD DQSI++F GA I
Sbjct: 295 AEHYRRRFRHILVDEYQDTNHAQYVLVRELAGHGSDLDPAELTVVGDADQSIYAFRGATI 354
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
F D+ + + + L +NYRST+ I+EAA+++I N R + K + TD G+KI+
Sbjct: 355 RNIVEFEADYPDARTVLLEQNYRSTQNILEAANAVISRNPDR-KPKRLWTDAGAGAKIVG 413
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN- 641
+E A+ F+ ++I G A G +A+ YR + + +P+
Sbjct: 414 YVADDEHAEARFVAEEIDRL---GDAEGVRPGDVAVFYRTNAQSRALEEVLIRVGLPYKV 470
Query: 642 IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
+ G FY ++ V+ IA LR DD RRV K+ + D + +
Sbjct: 471 VGGTRFYERREVKDAIAYLRALANVDDDVNLRRVLNV-------PKRGLGDRAESLV--- 520
Query: 702 KCSFISAACDIFGA------KISGTFKRSQLTQGRKVLLTLEMISK---LVRREPSISAV 752
SF FGA +I G R+ R +L +M+++ LV + + +
Sbjct: 521 -ASFADRERISFGAALERADEIPGMTTRTL----RPLLAFRDMMAELRALVDDGATPATI 575
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
+ V + YL E RA D + +L +V +T+FT EG
Sbjct: 576 LGEVLDRT--GYLAELRASDDPQDASRVENLAELHAV------------ATEFTELDPEG 621
Query: 813 NVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENS--VTLTTIHQSKGLEWDIVFVA 870
++ D ++++ A D I + + + E++ VTL T+H +KGLE+ +VF+
Sbjct: 622 DL-ADFLERVSLV-ADSDQIPDEDVADGAAEEAPKEDAGVVTLMTLHTAKGLEFPVVFLT 679
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQL---LQ 927
+ P + + + EERRL YV +TRAR++L++ + + W +
Sbjct: 680 GMEDGTFPHMRSLH-----DDAELAEERRLAYVGLTRARERLYLTRSAVRSAWGMANEFP 734
Query: 928 PSRFLKEIPHHLREVQAEQS 947
PSRFL+EIP L + + +S
Sbjct: 735 PSRFLEEIPEQLWDWRRRES 754
>gi|440704688|ref|ZP_20885518.1| ATP-dependent DNA helicase PcrA [Streptomyces turgidiscabies Car8]
gi|440273596|gb|ELP62320.1| ATP-dependent DNA helicase PcrA [Streptomyces turgidiscabies Car8]
Length = 844
Score = 236 bits (603), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 215/731 (29%), Positives = 330/731 (45%), Gaps = 102/731 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN+ Q AA TPLLIVAG GSGK + P ILA+TFT
Sbjct: 70 LDGLNENQ-RAAVVHADTPLLIVAGAGSGKTRVLTHRIAYLLGERSVHPGQILAITFTNK 128
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A + + TFHS +++ R +++L TS F IY +R +
Sbjct: 129 AAGEMKERVEQLVGP-RANAMWVMTFHSACVRILRRESKRLGFTSSFSIYDAADSKRLMA 187
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R L+ L KR F SF + + + +
Sbjct: 188 LVCRDLD----LDPKR---------------------------FPPKSFS-AKISNLKNE 215
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+D + + F K A Y LR NALD+ DLI +V LL FP+V
Sbjct: 216 LIDEEDFAAQASDGFEKTL----AQAYAMYQSRLREANALDFDDLIMTTVNLLRAFPDVA 271
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQIL------------ASHN----RITIVGDDDQS 513
+ Y+ ++ ++VDE+QDT+ QY+L++ L + H+ + +VGD DQS
Sbjct: 272 EHYRRRFRHVLVDEYQDTNHAQYALVRELVGTSEHPVDVPPSEHDLPPAELCVVGDADQS 331
Query: 514 IFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTD 573
I++F GA I F +D+ + I L +NYRST+ I+ AA+++I+ N R + KN+ T+
Sbjct: 332 IYAFRGATIRNILQFEEDYADATTIMLEQNYRSTQTILSAANAVIERNESR-RPKNLWTN 390
Query: 574 NSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
G++I E + F+ ++I G A G +A+ YR +VF+ F
Sbjct: 391 AGAGARITGYVADTEHDEAQFVAEEIDRLTDAGDAKA---GDVAVFYRTNAQSRVFEEIF 447
Query: 634 RERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID 692
+P+ + GV FY +K VR ++A LR D P RR+ + ++ R
Sbjct: 448 IRVGLPYKVVGGVRFYERKEVRDVLAYLRVLANPEDSVPLRRILN---VPKRGIGDRAEA 504
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTL-EMISKLVRREPSISA 751
ID +S K SF A + A G RS T K TL E + +V +
Sbjct: 505 MIDALSQREKISFPQALKRVDEAY--GMASRS--TNAVKRFNTLMEDLRTIVESGAGPAT 560
Query: 752 VITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDF--LSTKFTAAK 809
V+ +V YL E +A D +D LQ L A +F S A
Sbjct: 561 VLEAVLERT--GYLAELQASTD-------PQDETRIENLQELAAVALEFEQESGAAAEAG 611
Query: 810 EEGNVDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVF 868
E + + L AF++ ++ +++ + D +TL T+H +KGLE+ +VF
Sbjct: 612 EADGPAEGEAAAPPGLAAFLERVALVADSDQIPDEDDDGSGVITLMTLHTAKGLEFPVVF 671
Query: 869 VAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QL 925
+ + P + A +EEERRL YV +TRAR++L++ + + W
Sbjct: 672 LTGMEDGVFPHMRALGQA-----KELEEERRLAYVGITRARERLYLTRSSLRSAWGQPSY 726
Query: 926 LQPSRFLKEIP 936
PSRFL+EIP
Sbjct: 727 NPPSRFLEEIP 737
>gi|363889855|ref|ZP_09317207.1| hypothetical protein HMPREF9628_01703 [Eubacteriaceae bacterium
CM5]
gi|361966263|gb|EHL19190.1| hypothetical protein HMPREF9628_01703 [Eubacteriaceae bacterium
CM5]
Length = 723
Score = 236 bits (603), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 215/736 (29%), Positives = 339/736 (46%), Gaps = 145/736 (19%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN++Q +A LLI+AG GSGK ++P NILA+TFT
Sbjct: 3 LDKLNEKQKQAVIT-TDGALLILAGAGSGKTRVITNKIAYLIEEKNVNPYNILAITFTNK 61
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ R+ ++G +K + ISTFH+F ++ R A + + F IY Q ++ +I
Sbjct: 62 AAKEMQSRVEDLIG-IDSKRVWISTFHAFCTRILRYEASHILYENNFTIY-DTQDKQVLI 119
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ D+L GY + +L + S + + + +E
Sbjct: 120 KNC---------------MDIL------GYDKETLNTASVASEISRAKDSMVSVDDYE-- 156
Query: 410 GMDVAKASGKTPAEFR--KIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ +++R KI A + Y L+ NA+D+ DLI ++L E
Sbjct: 157 --------AEATSDYRNSKI-----ARVYRLYQEELKKNNAMDFDDLIYNCIRLFKLHKE 203
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFD 526
V ++YQD ++ I+VDE+QDT+ QY L+++L+ H I +VGDDDQSI+ + GADI
Sbjct: 204 VLEKYQDKFEYIMVDEYQDTNYSQYLLIKMLSQKHKNICVVGDDDQSIYGWRGADIRNIL 263
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
F KDF N +I+L +NYRST I+ AA ++I++N R K + T + +G KI I E
Sbjct: 264 EFEKDFENVIQIKLEQNYRSTSNIINAAGTVIKNNEGRKD-KRIWTSSDNGDKITIYEAT 322
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GV 645
+E+ + ++ I + G Y A+LYR + ++ AF + KIP+ I G+
Sbjct: 323 SENDESLYVAQNIRKLTEQG----YKYSDFAVLYRANALSRKYEEAFMKYKIPYKIFGGL 378
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVF---------KAFLLLEKEEKKRVIDHIDK 696
FY + ++ I+A LR DD +R+ K LE+ ++ I +D
Sbjct: 379 KFYDRMEIKDILAYLRLIDNKNDDVSLKRIINVPKRGIGAKTVEKLEQYAREHSISMLDS 438
Query: 697 ISTIRKCSFISAACDIFGA-KISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITS 755
I I + I GA K + K+ + G L+ +K++ + VI+S
Sbjct: 439 IEYISQ---------IIGAGKAQESIKKFAVMIG-----ALKAFAKILPVSELLEKVISS 484
Query: 756 VANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLL-----ADVTDFLSTKFTAAKE 810
+ L+E++ + L N+L+SV+Q ++DFL A
Sbjct: 485 TN---YENSLIEEKTP---ESQSRLENINELKSVIQEFERTSEDKSLSDFLQN----ATL 534
Query: 811 EGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVA 870
++D+D K N TL TIH +KGLE+ +VF+
Sbjct: 535 STDMDEDDKKS---------------------------NYATLMTIHSAKGLEFPVVFIV 567
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANW 923
A E P ++E + +EEERRL YVA+TRA++KLFI LY + N
Sbjct: 568 AAEENIFP---SSRSVLDE--SKLEEERRLCYVAITRAKEKLFITRAKSRLLYGKTNCNL 622
Query: 924 QLLQPSRFLKEIPHHL 939
SRF+ EI L
Sbjct: 623 ----SSRFISEIDKDL 634
>gi|421894205|ref|ZP_16324696.1| ATP-dependent DNA helicase PcrA [Pediococcus pentosaceus IE-3]
gi|385273033|emb|CCG90068.1| ATP-dependent DNA helicase PcrA [Pediococcus pentosaceus IE-3]
Length = 757
Score = 236 bits (603), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 217/733 (29%), Positives = 337/733 (45%), Gaps = 109/733 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++ LND Q EA PLLI+AG GSGK G++P NILA+TFT
Sbjct: 7 IKGLNDMQKEA-VQTTEGPLLIMAGAGSGKTRVLTHRVAYLIEEKGVNPWNILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+ S++G A E+ +STFH+ +++ R + ++L F I +QR
Sbjct: 66 AAREMRERVTSLLGDEAA-EIWVSTFHALCVRILRRNIDQLGYNRAFSIADPSEQR---- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+VK I D+ F R+ L ++
Sbjct: 121 -----------TLVKHILADLNYDPKKFD-PRSVLGTISN-------------------- 148
Query: 410 GMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
AK KTP +R+ +++ A I E Y L + ALD+ DLI +++L
Sbjct: 149 ----AKNDLKTPLTYRENASTPYEQVVADIYEEYQRRLENNQALDFDDLIMKTIELFQKN 204
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISG 524
PE YQ+ + I VDE+QDT+ QY L+ +LA H R I +VGD DQSI+ + GAD+
Sbjct: 205 PETLSFYQNKFHYIHVDEYQDTNQAQYQLVTMLAKHFRNICVVGDSDQSIYGWRGADMQN 264
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+F D+ + K + L +NYRST+ I+ AA+ +I++NV+R + K + TDN G KI
Sbjct: 265 IMNFESDYPDSKTVMLEQNYRSTQNILNAANDVIENNVER-KPKQLWTDNDEGEKISYYR 323
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF-NIH 643
+ FI+ KI E +YG AILYR +V + F + IP+ +
Sbjct: 324 GQTGIDEAHFIVQKIREQIKEHN---LNYGDFAILYRTNAQSRVIEDTFVKSNIPYLMVG 380
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID--HIDKISTI- 700
G FY +K +R +++ L D + RV E KR I I K+
Sbjct: 381 GHKFYDRKEIRDVLSYLTLIANEDDSMSFERVIN--------EPKRGIGSTSIAKLQAFA 432
Query: 701 --RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
S + AA + A + R+ + K++ L + + +I+ + +V
Sbjct: 433 DENNWSLLKAARSVQIANGISSRARNAIEDFAKMIDALRKSGEFL----NITELTEAVLE 488
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
+ LE+ + + + L ++ ++L VT K A EGN D+
Sbjct: 489 QTGYRAALEK--------SRTMESEARLENIDEFLT--VTKQFDDKNEA---EGNEIADE 535
Query: 819 KGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
G N+ +D++++ + + + VTL T+H +KGLE+ IVF+ + P
Sbjct: 536 NGD-NI--QLVDFLADLALVSDQDNVEEEPSGVTLMTLHAAKGLEFPIVFLVGMEDGIFP 592
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
L V +EEERRL YV +TRAR+KL+I M+ Q SRF+ EI
Sbjct: 593 LSR-----VMMDQEQLEEERRLAYVGITRARQKLYITNAYSRMLYGRTQTNPASRFISEI 647
Query: 936 -PHHLREVQAEQS 947
+L+ E+S
Sbjct: 648 GSQYLKSENEEKS 660
>gi|325860071|ref|ZP_08173197.1| ATP-dependent helicase PcrA [Prevotella denticola CRIS 18C-A]
gi|325482356|gb|EGC85363.1| ATP-dependent helicase PcrA [Prevotella denticola CRIS 18C-A]
Length = 842
Score = 236 bits (603), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 213/729 (29%), Positives = 342/729 (46%), Gaps = 105/729 (14%)
Query: 239 DEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAM 284
D + L +LN+ Q AA + P L++AG GSGK G+SP NILA+
Sbjct: 5 DREEEILSALNESQ-RAAVEYCTGPSLVIAGAGSGKTRVLTYKIAYLLNKGLSPWNILAL 63
Query: 285 TFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQ 344
TFT AA EM++RI I A+ L + TFHS ++ R + + + F IY
Sbjct: 64 TFTNKAAREMKERIARITTAGEAQRLYMGTFHSIFSRILRREGQAVGFSGNFTIYDETDS 123
Query: 345 R---RAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
R ++I++A+ L E Y +S+ F SM+ L
Sbjct: 124 RSLIKSIVKALGLDEK--------------------AYKPSSVHS-----FISMAKNHLI 158
Query: 402 QYNKFERDGMDVAK-ASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVK 460
+++ D + + + PA I + Y R NA+D+ D++ +
Sbjct: 159 TADEYAEDRAATERDRNARMPAVH---------LIYKAYEARCRQANAMDFDDILLYTYL 209
Query: 461 LLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNG 519
L E+ ++Y ++ I+VDE+QDT+ Q +++ +LA +H RI +VGDD QSI+SF G
Sbjct: 210 LFRDNREIREKYGQQFEYILVDEYQDTNYAQVNIISLLAETHRRICVVGDDYQSIYSFRG 269
Query: 520 ADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSK 579
A+I FR F + + +L RNYRST+ IV+AA+SL++HN ++ K V + + G K
Sbjct: 270 ANIDNILDFRNKFTDARLFKLERNYRSTQFIVQAANSLMKHNERQIP-KEVYSKEAAGDK 328
Query: 580 IIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIP 639
++ K C++ D + A + L+ +G + C Y + A+LYR + F+ FR++ IP
Sbjct: 329 VLYKPCYS-DREEAMAVAAELKRIRHGDS--CDYDNFAVLYRTNAQSRPFEDEFRKQGIP 385
Query: 640 FN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIS 698
+ I G++FY++K ++ IIA R D+ +RRV R I + +
Sbjct: 386 YKIIGGLSFYQRKEIKDIIAYFRLVANPDDEEAFRRVINY--------PARGIGNT-TVQ 436
Query: 699 TIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLT--LEMISKLVRREPSISAVITSV 756
I C+ A ++ +S + +G L+ +IS +++ A +T
Sbjct: 437 KIIACA-QQHAVSLWETILSPAEYGLDVNKGTLAKLSSFRMLISSFIKK-----AALTDA 490
Query: 757 ANMVPQKYLLEQRAV-VDFDGGKLLNEDNDL--RSVLQYLLADVTDFLSTKFTAAKEEGN 813
+ + ++E+ V D G NE DL R L+ ++ + F+ T +EEG
Sbjct: 491 YELGCE--IIEKSGVGADIRSG---NEPEDLARRENLEEFMSAMQGFVDT----GREEGR 541
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+ NV A DY+ E + D+ VTL TIH +KGLE+ VFV
Sbjct: 542 EE-------NVYLA--DYLQEVALYTDADKEEDDVPKVTLMTIHAAKGLEFPTVFVVGLE 592
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSR 930
E P + + +EEERRLLYVA+TRA + + + +Q PSR
Sbjct: 593 ENIFP-----SPMSSGSKHGIEEERRLLYVAITRAERHCILTNAKNRFRYGTMQVDNPSR 647
Query: 931 FLKEIPHHL 939
FL +I L
Sbjct: 648 FLNDIDSSL 656
>gi|291542836|emb|CBL15946.1| ATP-dependent DNA helicase PcrA [Ruminococcus bromii L2-63]
Length = 749
Score = 236 bits (603), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 213/738 (28%), Positives = 341/738 (46%), Gaps = 133/738 (18%)
Query: 240 EYSKYLQSLNDQQLEAA-CGDMSTPLLIVAGPGSGKGI---------------SPSNILA 283
E K +ND Q +A C + PLLI+AG GSGK P ILA
Sbjct: 5 EIQKNFSHMNDMQKQAVFCTE--GPLLILAGAGSGKTTVLVNRIAYILQCELCKPWQILA 62
Query: 284 MTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQ 343
+TFT AA E+++RI + V + A ++ +TFHS ++ R + +++ TS F +YG
Sbjct: 63 ITFTNKAAGELKERICAAVPEGGA-DIWAATFHSTCARILRRYGDRIGYTSHFTVYGTDD 121
Query: 344 QRRAIIEAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQ 402
Q++ + + ++ L EK L VK I ++
Sbjct: 122 QKKLVKDILKQLNIAEKTLPVKSILSE--------------------------------- 148
Query: 403 YNKFERDGMDVAKASGK--TPAEFRKIGD------EIGAAILENYNGILRSCNALDYHDL 454
++KA K TP E RK + +I A + E Y L++ +A+D+ D+
Sbjct: 149 ----------ISKAKDKMLTPEEMRKEAEFDSRKAQI-AKVYEIYQTKLKTADAMDFDDM 197
Query: 455 ISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQS 513
+ +VKL T P++ Y++ +K I+VDE+QDT+ +QY + +LAS + I +VGDDDQS
Sbjct: 198 LCNTVKLFETAPDILDYYRNQFKYIMVDEYQDTNKVQYKFVSLLASKYGNICVVGDDDQS 257
Query: 514 IFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTD 573
I+ F GA I SF F N K IRL +NYRST+ I+ AA+ +I +N R + K + T+
Sbjct: 258 IYKFRGATIENILSFENTFKNAKMIRLEQNYRSTQNILNAANEVISNNTMR-KGKTLWTE 316
Query: 574 NSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
N G KI + NE + FI IL+ ++G Y AILYR + A
Sbjct: 317 NGQGEKIKVHTAENERDEANFIAQTILDGVADGR----KYSDYAILYRMNAQSNAIEQAL 372
Query: 634 RERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID 692
+P I G FY ++ +R ++A L+ DD R+ KR I
Sbjct: 373 SRSGVPHRVIGGHRFYDREEIRDMVAYLQVINNPHDDVRLSRIINV--------PKRGIG 424
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRS----QLTQGR-KVLLTLEMISKLVRREP 747
+T+ + I+A G I K + QL++ K+ + +I L+ E
Sbjct: 425 ----ATTVSHAADIAAG---LGESIYDVIKEAENYPQLSRASAKLKAFVALIDGLIEAEQ 477
Query: 748 SISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTA 807
S + + N+V + EQ + D ++ E+ ++ L +++ F
Sbjct: 478 SGEYSLAELYNLVIEHTSYEQYLKTEKDNPEVRIEN------IEELSSNIVKF------- 524
Query: 808 AKEEGNVDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDI 866
EE D+ L AF++ IS + + +++ + ++ + T+H +KGLE+ +
Sbjct: 525 --EEDYGDEAD------LSAFLEEISLQTDIDNYDA----DADTCVMMTLHSAKGLEFPV 572
Query: 867 VFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANW 923
VF+A E P V A + EERRL YV +TRA++ L+ M+ +
Sbjct: 573 VFIAGMEEGMFPSV-----ATMMNPDELNEERRLAYVGITRAKEILYFTKTNSRMLFGST 627
Query: 924 QLLQPSRFLKEIPHHLRE 941
+ SRFL EIP +L E
Sbjct: 628 SYNKGSRFLNEIPDNLLE 645
>gi|302392793|ref|YP_003828613.1| ATP-dependent DNA helicase PcrA [Acetohalobium arabaticum DSM 5501]
gi|302204870|gb|ADL13548.1| ATP-dependent DNA helicase PcrA [Acetohalobium arabaticum DSM 5501]
Length = 707
Score = 236 bits (603), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 207/752 (27%), Positives = 343/752 (45%), Gaps = 119/752 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN QQ + A PLL++AG GSGK + P N+LA+TFT
Sbjct: 4 LDGLNPQQ-KKAVKHKDGPLLVLAGAGSGKTMVLTHRIAYLIQQCNVEPYNLLAVTFTNK 62
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+RI ++ + ++++ +STFHS ++++ R KL F IY Q+
Sbjct: 63 AAEEMRERIEKLIAQ-DSEDIWMSTFHSIAVRILRREINKLGYDRNFTIYDTTDQQ---- 117
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++K I + L D R+ L Q + + D
Sbjct: 118 -----------ALIKDIIKNQLDLDPKQFKPRSVL----------------NQISNAKND 150
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+DV+ + F ++ EI E+Y L+ NALD+ DLI +V+L + V
Sbjct: 151 LIDVSAFQQGVGSYFERVVGEI----YESYQQQLKENNALDFDDLIMKTVELFEEYELVL 206
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ+ ++ I+VDE+QD + QY L+ +LA H I +VGDDDQ I+ F GADIS F
Sbjct: 207 EYYQNRFRYILVDEYQDVNHAQYRLINLLAEDHKNICVVGDDDQGIYGFRGADISNILDF 266
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
+D+ + I+L +NYRST I++AA ++++N R + K + T+N G+ I + E
Sbjct: 267 EEDYSQTEIIKLEQNYRSTERILDAAYEVVRNNRGR-KPKKLWTENDQGAPIKQYKARGE 325
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ +I ++I++ Y A+LYR +V + FR++ IP+ I G+ F
Sbjct: 326 TEEAEYITEEIMKLREE---EALDYDDFAVLYRTNAQSRVLEEVFRKQGIPYRIIGGLKF 382
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y +K ++ I+A LR DD +R+ + ++ + ++ + S
Sbjct: 383 YERKEIKDILAYLRVLYNPSDDICLQRIIN---VPKRGIGATTVGRLNNFAAQHNISLYE 439
Query: 708 AA-----CDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
A D ++ SG +R E++S +R ++A+ + +
Sbjct: 440 AVQRVEEIDSINSRCSGQVRRFN-----------ELMSYFRQRADELNALELTKELLDET 488
Query: 763 KYLLEQRAVVDFDGGKLLNEDND-LRSVLQ---YLLADVTDFLSTKFTAAKEEGNVDQDK 818
YL L ED D RS ++ LL D+ +++ ++EG++
Sbjct: 489 DYL-----------KNLRQEDTDQARSRIENIKELLTDIEEYI-------EQEGDI---T 527
Query: 819 KGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
G A I + E E ++V + T+H +KGLE+ +VF++ E P
Sbjct: 528 LGGYLEEVALITDVDNLEAEA---------SAVVMMTLHSAKGLEFPVVFLSGMEEGLFP 578
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW--QLLQP-SRFLKEI 935
F+ ++EEERRL YV MTRA +KL++ + + + + P SRF++EI
Sbjct: 579 HSRSFDDK-----EAIEEERRLCYVGMTRAEEKLYLTHALSRKIYGQRSYNPVSRFIEEI 633
Query: 936 PHHLREVQAEQSVQDQHENIPEGTAQFTINLP 967
P L E Q ++ PE T + P
Sbjct: 634 PQQLFCTNEENEQQHSDKSQPEYTVGDQVKHP 665
>gi|377556977|ref|ZP_09786646.1| ATP-dependent DNA helicase PcrA [Lactobacillus gastricus PS3]
gi|376166816|gb|EHS85697.1| ATP-dependent DNA helicase PcrA [Lactobacillus gastricus PS3]
Length = 757
Score = 236 bits (603), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 198/726 (27%), Positives = 343/726 (47%), Gaps = 106/726 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
LQ +ND+Q EA PLL++AG GSGK + P NILA+TFT
Sbjct: 7 LQGMNDKQQEAVLT-TEGPLLVMAGAGSGKTRVLTHRIAYLIEEKHVLPWNILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G ++G+ A+++ +STFH+ +++ R +++ F I +QR
Sbjct: 66 AAREMQERVGKLLGE-NARDVWVSTFHALCVRILRRDIDRIGFNRAFTIADSSEQR---- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+VKRI D F R+ L
Sbjct: 121 -----------TLVKRICEDQNIDTQKFD-PRSIL------------------------S 144
Query: 410 GMDVAKASGKTPAEFRK-----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLST 464
+ AK + +TP ++ + G +G + ++Y L + +LD+ DLI +++L T
Sbjct: 145 AISNAKNAMETPEQYLEKHRGPFGQMVGK-VYQSYQTELANNQSLDFDDLIMKTIELFQT 203
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADIS 523
+ YQD + I VDE+QDT+ QY L+ +LA + + +VGD DQSI+ + GA+++
Sbjct: 204 SSDTLAYYQDKFHYIHVDEYQDTNDAQYQLVNLLAQKYQNLCVVGDADQSIYGWRGANMN 263
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
+F +D+ + + L +NYRST+ I++AA+ +I +N++R KN+ T+N G KI
Sbjct: 264 NILNFERDYPQAQTVMLEQNYRSTQTILKAANEVIINNLQRKD-KNLWTENGAGEKISYY 322
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-I 642
NE + FI+ KI E +N Y A+LYR +V + F + IP+ +
Sbjct: 323 RAQNEHDEAQFIVKKIQEERANHQ---YHYNDFAVLYRTNAQSRVIEETFLKSSIPYTMV 379
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRK 702
G FY +K +R I+A L + D + RV ++ ++H+ + +
Sbjct: 380 GGHKFYDRKEIRDILAYLTLIVNPQDSMSFTRVVNT---PKRGIGDTSVEHLREFADDNH 436
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
+ AA ++ A G R++L Q ++++ L + + IT + ++
Sbjct: 437 WPLLYAAQNVINANQIGAAARNKLDQFGQLMVDLT--------DQADQLSITDLTELILD 488
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
K ++ L +D L++ + D ++ ++ + N+ Q +K I
Sbjct: 489 KSGYDE----------ALRQDKSLQAQARRENLDEFKSVTAEYDKQHADDNLPQMEK-II 537
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
N L A + +S+++ + E +VTL T+H +KGLE+ ++F+ + PL
Sbjct: 538 NFL-ADLALVSDQD------DVDEQEPAVTLMTLHAAKGLEFPVIFLIGMEQGIFPLARA 590
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHHL 939
E+ +EEERRL YV +TRA++KL++ M+ Q QPS F+ EI L
Sbjct: 591 M-----ERTDEMEEERRLAYVGITRAKRKLYLTNAFSRMLYGRVQRNQPSDFIDEIDDSL 645
Query: 940 REVQAE 945
+ + E
Sbjct: 646 IKTENE 651
>gi|390935652|ref|YP_006393157.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389571153|gb|AFK87558.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 716
Score = 236 bits (603), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 223/721 (30%), Positives = 349/721 (48%), Gaps = 119/721 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LND+Q EA P+LI+AG GSGK +SP+NI+A+TFT
Sbjct: 4 LEGLNDRQKEAVVT-TEGPVLILAGAGSGKTRVLTHRIAYLVREKNVSPANIIAITFTNK 62
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+DR+ S++G ++ +STFHS +++ R EK+ F+IY Q+ I
Sbjct: 63 AAEEMKDRVESLLG--YVGDIWVSTFHSACVRILRRDIEKIGYDRNFVIYDTQDQKTLIS 120
Query: 350 EAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
+ ++ L N+K K G + A + M+ S F L N +
Sbjct: 121 DCIKELNLNDKQYTAK-------------GVLSAISKAKDKMI--SPDDFLLEFGNDYRN 165
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
+KI D + + Y L+ NALD+ D+I +++L ++
Sbjct: 166 ----------------KKIAD-----VYKLYQKKLKKDNALDFDDIIIKTIELFKKNEDI 204
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDS 527
+ YQD ++ I++DE+QDT+ QY + +LA R + +VGDDDQSI+ + GADI
Sbjct: 205 LKYYQDKFRYIMIDEYQDTNRPQYEFVNLLAKKYRNLCVVGDDDQSIYGWRGADIKNILD 264
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KD+ K I+L +NYRST+ I++AA+S+I +NVKR + K + TDN +G KI+I E N
Sbjct: 265 FEKDYPEAKVIKLEQNYRSTQVILDAANSVIDNNVKR-KRKKLWTDNKNGEKIVIWEAQN 323
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG-VA 646
E + FII+ I S G Y A+LYR ++F+ IP+ + G +
Sbjct: 324 ERDEANFIIETIKNLISEGR----KYSDFAVLYRTNAQSRIFEETCMANDIPYKLVGALR 379
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFI 706
FY +K ++ IIA LR + DD +R+ KR I ++++ K +
Sbjct: 380 FYDRKEIKDIIAYLRILVNPYDDVSLKRIINV--------PKRGIGE-STVASLEKYALD 430
Query: 707 SAACDIFG---AKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
F ++SG +++ G K E+I L+ + ++ +T V + V K
Sbjct: 431 HDTSMYFAIPHVEVSGRTRKA--LDGFK-----ELIDDLISQLDFMT--VTEVIDYVLDK 481
Query: 764 --YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
Y+ E +A DG E+++ R + ++ +F+ AA+E QDK
Sbjct: 482 TGYIEELKA----DG----TEESEGR------IENINEFIG----AAREFMESSQDKS-- 521
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
L+AF+ I+ T E SV L T+H +KGLE+ +VF+A E P
Sbjct: 522 ---LEAFLSGIT--LVSDIDTTGEIGE-SVVLMTLHSAKGLEFPVVFMAGMEEGIFPNSM 575
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM---MDANWQLLQPSRFLKEIPHH 938
F +EEERRL YV +TRA+++LF+ Y + Q SRF+ E+P
Sbjct: 576 SFVDE-----HELEEERRLCYVGITRAKERLFMTYARNRNLYGKPQYNTASRFINEVPRD 630
Query: 939 L 939
L
Sbjct: 631 L 631
>gi|373494228|ref|ZP_09584833.1| hypothetical protein HMPREF0380_00471 [Eubacterium infirmum F0142]
gi|371968725|gb|EHO86179.1| hypothetical protein HMPREF0380_00471 [Eubacterium infirmum F0142]
Length = 741
Score = 236 bits (603), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 209/723 (28%), Positives = 335/723 (46%), Gaps = 121/723 (16%)
Query: 245 LQSLNDQQLEAA-CGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
L LND+Q EA C D PLLI+AG GSGK GISP ILA+TFT
Sbjct: 3 LNKLNDKQKEAVRCID--GPLLIIAGAGSGKTSTMTHRIAYMIEQGISPYRILAVTFTNK 60
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EMR+RI S+ G+ + + TFH+ L++ R HA + F+IY Q+
Sbjct: 61 AANEMRERIESLCGEIHG--MWVMTFHAMCLRMLRKHAGVIGYDKNFVIYDTADQKT--- 115
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
L+ N + K ++ D FK D
Sbjct: 116 ----LVRN----ICKELNLDS-------------------------KEFKPAYITSVISD 142
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
K G TP EF + + +++ A + Y LR NA+D+ DL+ ++++
Sbjct: 143 ----KKEQGITPQEFAENAIGVKNKLLARAYQMYEKALRDNNAMDFDDLLLNTLRMFKAD 198
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISG 524
V EY D ++ I+VDE+QDT+ +QY L+++L+ H I +VGDDDQ I+ + GADI+
Sbjct: 199 ESVLLEYSDRFEYIMVDEYQDTNNIQYRLVKLLSQRHGNICVVGDDDQCIYEWRGADITN 258
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+F KDF N + I+L +NYRS I+ AA S+I +N R Q K + T+ G KI +
Sbjct: 259 ILNFEKDFKNARLIKLEQNYRSKGNILAAAHSVISNNTGRKQ-KKLWTEKEAGEKITYFK 317
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-H 643
+E + FI +I NG Y A+LYR + + F R IP+ +
Sbjct: 318 AEDEKDEADFIAREI-NILKNGN---LKYSDFAVLYRTNAQSRALEDVFARRGIPYRVLS 373
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH--IDKISTIR 701
G+ +Y +K V+ +++ +R L DD +R+ E KR I ++K+ T+
Sbjct: 374 GMRYYDRKEVKDMMSYMRLVLNPKDDLALKRIIN--------EPKRGIGAKTLEKLFTLA 425
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
S ++ + T + +K+ T+E+ RE + S + + +
Sbjct: 426 GVRGQSLMESLWEDDVLDTLPKKAFEDVKKMARTIELC-----REEADSLSVADIYD--- 477
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST--KFTAAKEEGNVDQDKK 819
R +V+ L +N + S + + ++ +F S + EE ++++ +
Sbjct: 478 -------RLLVNTGYLSALESENTVES--ESRIENLMEFKSVIENYENESEEPSLEEFME 528
Query: 820 GCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
G + +SE + H TQ ++V L T+H SKGLE+ +VF+ + P
Sbjct: 529 G--------LSLMSEVDN-HDETQ-----DAVVLMTMHSSKGLEFPVVFLPGMEDGLFPG 574
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
F+ +EEERRL YV MTRA+++LF+ M+ + + S FL+E+
Sbjct: 575 ARSFDSP-----EGMEEERRLCYVGMTRAKERLFLTSATRRMLYGRTEYQRESIFLREVD 629
Query: 937 HHL 939
L
Sbjct: 630 KRL 632
>gi|256545197|ref|ZP_05472563.1| ATP-dependent DNA helicase PcrA [Anaerococcus vaginalis ATCC 51170]
gi|256399238|gb|EEU12849.1| ATP-dependent DNA helicase PcrA [Anaerococcus vaginalis ATCC 51170]
Length = 729
Score = 236 bits (602), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 198/742 (26%), Positives = 341/742 (45%), Gaps = 142/742 (19%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +LND+Q EA D PLL+VAG GSGK ++P NILA+TFT
Sbjct: 3 LSNLNDKQKEAVLHDKG-PLLVVAGAGSGKTRVLTTSIAYLIKEKNVNPVNILAITFTNK 61
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM++RI ++ + + L I TFHS ++ R + K+ + F IY Q+
Sbjct: 62 AANEMKERISDLLDEDVS-HLWIGTFHSICARILRMNINKIGYDNNFTIYDTNDQKT--- 117
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+VK I D+ D + L Y
Sbjct: 118 ------------LVKEIINDLNYKDD----------------ISPKEALNLISY------ 143
Query: 410 GMDVAKASGKTPAEFRKIG-----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLST 464
K +P EF I E I +NY N+LD+ DLI +++L +
Sbjct: 144 ----CKNKSISPKEFLNINTFYAKQEEYYNIYKNYEKKKFEYNSLDFDDLILKTLELFAE 199
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADIS 523
+ YQD ++ + VDE+QDT+ QY L++ + HN + +VGD DQSI+SF GADI+
Sbjct: 200 DSNTLKYYQDKFEYLFVDEYQDTNKSQYELIKFIGKGHNNVRVVGDADQSIYSFRGADIN 259
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
F KDF + K I+L NYRST I+ A+ LI++N +R + KN+ T + GS+++ K
Sbjct: 260 NILDFEKDFKDAKTIKLEENYRSTSNIINVANKLIKNNSERKE-KNLWTSKNDGSEVLYK 318
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-I 642
+ E + F+ID+I ++G +AILYR ++F+ + + + +
Sbjct: 319 KSSVESEEGKFVIDEINSLLNDG----YRLKDMAILYRMNAQSRIFEEYLMKNLLDYKVV 374
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKK----RVIDHIDKIS 698
G+ FY +K ++ +I+ L+ + DD +R+ E KK + ++ ++K +
Sbjct: 375 GGLKFYDRKEIKDLISYLKILVNPKDDISLKRII-------NEPKKGIGDKTVEKLEKEA 427
Query: 699 TIRKCSFISAACD--IFG---AKISGTFKR-----SQLTQGRKVLLTLEMISKLVRREPS 748
S CD +F +K+ + ++ +++ K +E+I +++ +
Sbjct: 428 NKLGFSLTELVCDPSLFSNLPSKLKSSCEKFYNPLAEIFDNYKDYDIVELIEEILDKSGY 487
Query: 749 ISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAA 808
I A + + Y +E R+ +D ++ +F+S +AA
Sbjct: 488 IRA--------LEESYSVENRSRID----------------------NLNEFIS---SAA 514
Query: 809 KEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVF 868
+ + N +D DY+ + D ++S++L TIH +KGLE+ + F
Sbjct: 515 EYQSNNPEDN---------IHDYLENLSLLSDLDKTEDKDDSISLMTIHSAKGLEFKVCF 565
Query: 869 VAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQ---L 925
V +E P + ++EEERR+ YVA+TRA +KL++ + +
Sbjct: 566 VVGMDEGLFPSKRSIDEG------NIEEERRICYVAITRAMEKLYLSSAEIRRQFGQPVY 619
Query: 926 LQPSRFLKEIPHHLREVQAEQS 947
+PSRFL E+ ++++ +++
Sbjct: 620 YKPSRFLNEVESSIKKIDQDKT 641
>gi|404416605|ref|ZP_10998422.1| ATP-dependent DNA helicase [Staphylococcus arlettae CVD059]
gi|403491009|gb|EJY96537.1| ATP-dependent DNA helicase [Staphylococcus arlettae CVD059]
Length = 732
Score = 236 bits (602), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 209/725 (28%), Positives = 339/725 (46%), Gaps = 121/725 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++ +ND+Q A PLLI+AG GSGK +SP NILA+TFT
Sbjct: 5 VEKMNDEQ-SLAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ S+VG+ A+ + +STFHS +++ R ++L F I Q+ ++I
Sbjct: 64 AAREMKERVESLVGEQ-AEVIWMSTFHSMCVRILRRDIDRLGIERNFTIIDPTDQK-SVI 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ V EN + K+ M G ++ L
Sbjct: 122 KDVLKQEN---IDSKKFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPA----EFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP E ++ A + Y L ALD+ DLI ++KL
Sbjct: 152 ---------KTPEDAQNEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTIKLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV + YQ+ ++ I VDE+QDT+ QY+L+Q LAS + +VGD DQSI+ + GADI
Sbjct: 203 PEVLEYYQNKFQYIHVDEYQDTNKAQYTLVQQLASKFENLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ I L +NYRST+ I+ AA+ +I++N +R + K + T N+ G KI E
Sbjct: 263 ILSFEEDYPQATTIFLEQNYRSTKTILTAANEVIKNNSER-KPKGLWTGNTEGEKIQYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++ Y +AILYR +V + F + IP+ +
Sbjct: 322 ATTERDEAEYVVREIMKQQ----KKNKKYKDMAILYRTNAQSRVLEETFMKSNIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR I +DKI+
Sbjct: 378 GQKFYDRKEIKDLLSYLRIVANSNDDISLQRIINV--------PKRGIGPSSVDKIANYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREP--SISAVITSVANM 759
+ + IS + G K+ +TQ + + E++ L++ + IS ++ +
Sbjct: 430 RQNDISMFDALGEVDFIGLSKK--VTQ--ECITFYELMQNLIKEQEFLEISEIVEEILQK 485
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
+ +LE+ ++ RS L+ ++ +F+S E N +++
Sbjct: 486 SGYRMMLEKEQTLES------------RSRLE----NIDEFMS---VPKDYEKNTPLEEQ 526
Query: 820 GCINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
IN L + + I E + E+ VTL T+H +KGLE+ IVF+ E+
Sbjct: 527 SLINFLTDLSLVADIDEAQI----------EDGVTLMTMHSAKGLEFPIVFIMGMEESIF 576
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKE 934
P + ++ +EEERR+ YVA+TRA ++LFI + M+ Q PSRFL+E
Sbjct: 577 PHIRAIK---SDDEHEMEEERRICYVAITRAEEQLFITHATSRMLFGRSQSNLPSRFLRE 633
Query: 935 IPHHL 939
IP L
Sbjct: 634 IPEEL 638
>gi|386811236|ref|ZP_10098462.1| ATP-dependent DNA helicase PcrA [planctomycete KSU-1]
gi|386405960|dbj|GAB61343.1| ATP-dependent DNA helicase PcrA [planctomycete KSU-1]
Length = 728
Score = 236 bits (602), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 213/729 (29%), Positives = 339/729 (46%), Gaps = 135/729 (18%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
L+ + + Q EA M PLL++AG GSGK GI+P NILA+TFT A
Sbjct: 4 LKDITESQREAVT-HMEGPLLVIAGAGSGKTRIITRRIGYLISQGINPYNILAITFTNKA 62
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIE 350
A EM +RI + + K L ISTFH ++ R++ E+L + +F IY Q I
Sbjct: 63 ADEMCERIKQFLSQ---KGLWISTFHKMCSRILRNNIERLGYSKDFSIYDTTDQLNQIKS 119
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
+ L+ + R + +T H A ++N F S +S YN+
Sbjct: 120 IMAELQFDTAQWKPRT---IASTISH-----AKNKLINPETFTSTAS---GYYNR----- 163
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
I A + Y+ IL++ NALD+ DL+ +++L T ++ +
Sbjct: 164 --------------------IVAQVYAKYHTILKTNNALDFDDLLIKTIELFKTHTDILE 203
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDSFR 529
YQ+ +K ++VDE+QDT+ QY++ ++LAS R I + GD DQSI+ + GADI F
Sbjct: 204 MYQEKFKFVLVDEYQDTNYTQYTITRMLASKYRNICVTGDPDQSIYGWRGADIRNIMDFE 263
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
KD+ + K + L +NYRST+ I+ AASS+IQ N R Q K + T+N G KI + C +E
Sbjct: 264 KDYPDAKVVLLEKNYRSTKRILHAASSVIQQNRYRKQ-KRLWTENVEGEKIKVIHCEDEH 322
Query: 590 AQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFY 648
+ I I ++ G Y +IA+ YR +V + + + IP+ I GV FY
Sbjct: 323 GEAEEIAKSIRMLSTKG----VKYSNIALFYRTNAQSRVLEISLKNHGIPYRIIGGVEFY 378
Query: 649 RKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISA 708
++K ++ I++ LR + D R R I + +TI+K +A
Sbjct: 379 QRKEIKDILSYLRLCINPQDRVALERTINT--------PTRGIGN----TTIKKLEDWAA 426
Query: 709 A--CDIFGA----------KISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSV 756
A +F A K GT + T+ ++L L+ + K + V
Sbjct: 427 AQNTSLFYALQQVNAIPEIKGQGTLSIKKFTE---LILHLQQLPK------------SPV 471
Query: 757 ANMVPQKYLLEQRAVVDF---DGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
N++ Q ++++ ++F GGK E D +A+V + ++ AA E
Sbjct: 472 ENIIKQ--VIQETRYIEFLRESGGK---ESKD-------RIANVEELVN----AAHE--- 512
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
D L+ F++ ++ + ++ +VTL T H +KGLE+ +VF+
Sbjct: 513 --YDMNYSEGTLQGFLEEVALVSDVD---ELQEDTRAVTLMTFHTAKGLEFPVVFITGME 567
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSR 930
E +P + + +EEERRL YV +TRA +LF+ + M PSR
Sbjct: 568 EKLLP-----HAESTDSDDKIEEERRLCYVGITRAMSELFLTHTKRRMRYGQMNFCIPSR 622
Query: 931 FLKEIPHHL 939
FL EIP +
Sbjct: 623 FLDEIPKEI 631
>gi|302558895|ref|ZP_07311237.1| ATP-dependent DNA helicase PcrA [Streptomyces griseoflavus Tu4000]
gi|302476513|gb|EFL39606.1| ATP-dependent DNA helicase PcrA [Streptomyces griseoflavus Tu4000]
Length = 825
Score = 236 bits (602), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 212/727 (29%), Positives = 328/727 (45%), Gaps = 110/727 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ LND Q AA +PLLIVAG GSGK + P ILA+TFT
Sbjct: 70 LEGLNDNQ-RAAVVHSGSPLLIVAGAGSGKTRVLTHRIAHLLAERHVHPGQILAITFTNK 128
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A + + TFHS +++ R +++L TS F IY +R +
Sbjct: 129 AAGEMKERVEQLVGP-RANAMWVMTFHSACVRILRRESKRLGFTSSFSIYDAADSKRLMA 187
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R L+ L KR F SF + + + +
Sbjct: 188 LVCRDLD----LDPKR---------------------------FPPKSFS-AKISNLKNE 215
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+D + + F K + A Y LR NALD+ DLI +V LL FP+V
Sbjct: 216 LIDEEDFAAQAADGFEKTLAQAYAL----YQSRLREANALDFDDLIMTTVNLLRAFPDVA 271
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILAS---------------HNRITIVGDDDQSI 514
+ Y+ ++ ++VDE+QDT+ QYSL++ L + +VGD DQSI
Sbjct: 272 EHYRRRFRHVLVDEYQDTNHAQYSLVRELVGTVEHPVDVPPEAEVPPAELCVVGDADQSI 331
Query: 515 FSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDN 574
++F GA I F +D+ + I L +NYRST+ I+ AA+++I+ N R + KN+ T+
Sbjct: 332 YAFRGATIRNILQFEEDYPDATTILLEQNYRSTQTILSAANAVIERNESR-RPKNLWTNA 390
Query: 575 SHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFR 634
G++I E + F+ D+I G A G +A+ YR +VF+ F
Sbjct: 391 GSGARITGYVADTEHDEAQFVADEIDRLTDAGEAKA---GDVAVFYRTNAQSRVFEEIFI 447
Query: 635 ERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH 693
+P+ + GV FY +K VR ++A LR D P RR+ + ++ R
Sbjct: 448 RVGLPYKVVGGVRFYERKEVRDVLAYLRVLANPEDSVPLRRILN---VPKRGIGDRAEAM 504
Query: 694 IDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI 753
ID ++ K SF A + A G RS R L +E + +V + V+
Sbjct: 505 IDALAQREKISFPQALKRVDEAY--GMAARSSNAVKRFNTL-MEELRTVVESGAGPATVL 561
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
++ YL E +A D +D LQ L A +F +E G
Sbjct: 562 EAILERT--GYLAELQASTD-------PQDETRIENLQELAAVALEF-------EQERG- 604
Query: 814 VDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKA 872
+G L F++ ++ +++ + D +TL T+H +KGLE+ +VF+
Sbjct: 605 -----EGESVALSDFLEQVALVADSDQIPDEDEDGSGVITLMTLHTAKGLEFPVVFLTGM 659
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPS 929
+ P + G E +EEERRL YV +TRAR++L++ + + W PS
Sbjct: 660 EDGVFPHMRAL-GQTKE----LEEERRLAYVGITRARERLYLTRSTLRSAWGQPSYNPPS 714
Query: 930 RFLKEIP 936
RFL+EIP
Sbjct: 715 RFLEEIP 721
>gi|238917480|ref|YP_002930997.1| hypothetical protein EUBELI_01558 [Eubacterium eligens ATCC 27750]
gi|238872840|gb|ACR72550.1| Hypothetical protein EUBELI_01558 [Eubacterium eligens ATCC 27750]
Length = 822
Score = 236 bits (602), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 210/732 (28%), Positives = 340/732 (46%), Gaps = 113/732 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LND Q + A LLI+AG GSGK G+ P NI+A+TFT
Sbjct: 3 LEDLNDSQ-KRAVKYTDGALLIIAGAGSGKTRVLTNRIAYLIEECGVDPYNIMAITFTNK 61
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ + V + A + +STFHS +++ R + +++ + F IY Q+ I
Sbjct: 62 AAREMKERVETTVAQG-AGAVWVSTFHSTCVRILRRYIDRIGYDNNFTIYDTDDQKSVIK 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ + + I T ML RA + +++
Sbjct: 121 DICKKM---------NIDTKMLKE-------RAIMSKISS-------------------- 144
Query: 410 GMDVAKASGKTPAEFR-KIGDEIG----AAILENYNGILRSCNALDYHDLISCSVKLLST 464
AK KTP EF + G++ A + Y L+ NALD+ DLI +V+L +
Sbjct: 145 ----AKDELKTPDEFELEAGNDYNLRRIAGVYREYQKTLKLNNALDFDDLIFKTVELFQS 200
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADIS 523
EV + YQD ++ I+VDE+QDT+ Q+ L+ +LA+ + I +VGDDDQSI+ F GA+I
Sbjct: 201 DAEVLEHYQDRFRYIMVDEYQDTNTSQFKLVAMLAAKYGNICVVGDDDQSIYKFRGANIY 260
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
+F F K I+L +NYRST+ I+ AA+++I +N+ R + K++ TDN G K+
Sbjct: 261 NILNFENVFTGAKVIKLEQNYRSTQTILNAANAVISNNIGR-KSKSLWTDNGEGEKVNYT 319
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH 643
N + + I E+ +G +Y +AILYR + + IP+ I+
Sbjct: 320 LYENGYDEAEGVASGIAEYVRDG----WNYNDVAILYRTNAQSRALEEKLMIHNIPYKIY 375
Query: 644 GVA-FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRK 702
G FY++K ++ I+A L+T G D +R+ + ++ ID + + +
Sbjct: 376 GGQNFYQRKEIKDILAYLKTIDNGLDGQAVKRIIN---VPKRGIGNTTIDRLQEYADFND 432
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
+F A + AK T K + L+ K+ +++I +L +E +S + A +
Sbjct: 433 ITFWEA---LVNAKDIDTIKNAALS---KLEPFVDLIGRLRAKEEFMSLKELAEAVIEDT 486
Query: 763 KYL--LEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
Y+ L Q V+ + N D + V+ Y + KE G + G
Sbjct: 487 GYIESLSQNETVEEVEARRENLDEFINKVVSYE------------ESCKEAGE-EPTLSG 533
Query: 821 CIN--VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
+ L A ID + E E V L T+H +KGLE+ IV++ + P
Sbjct: 534 LLEEVALIADIDNLDESEPH------------VMLMTLHSAKGLEFPIVYMTGMEDGLFP 581
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
+ V++ T +EEERRL YV +TRA K L + M+ Q+ + SRF+ EI
Sbjct: 582 ---SYMTIVSDDSTEIEEERRLCYVGITRAEKILNLTSAKSRMVRGETQMNKVSRFINEI 638
Query: 936 PHHLREVQAEQS 947
P ++ S
Sbjct: 639 PKDYMHIENNSS 650
>gi|319655031|ref|ZP_08009102.1| PcrA protein [Bacillus sp. 2_A_57_CT2]
gi|317393298|gb|EFV74065.1| PcrA protein [Bacillus sp. 2_A_57_CT2]
Length = 743
Score = 236 bits (602), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 226/723 (31%), Positives = 345/723 (47%), Gaps = 112/723 (15%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFT 287
K L LN QQ + A PLLI+AG GSGK G++P NILA+TFT
Sbjct: 7 KLLNGLNPQQ-QNAVKTTDGPLLIMAGAGSGKTRVLTHRIAYLMVEKGVNPYNILAITFT 65
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EMRDRI +++G A A E+ ISTFHS +++ R +++ F I Q+
Sbjct: 66 NKAAREMRDRIHNMMGGA-ADEIWISTFHSMCVRILRRDIDRIGYNRNFTILDSTDQQSV 124
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
I + IL K + G S+SS
Sbjct: 125 I---------KSILKDKNLDPKKFDPRAILG---------------SISS---------- 150
Query: 408 RDGMDVAKASGKTPAEFRKI-GD---EIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
AK TP E+ K GD ++ + + Y LR ALD+ DLI +++L
Sbjct: 151 ------AKNELITPEEYAKTAGDYIQQVASDVYTEYQKRLRRNQALDFDDLIMITIQLFQ 204
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADI 522
PEV + YQ ++ I VDE+QDT+ QY L+++LAS + +VGD DQSI+ + GADI
Sbjct: 205 RVPEVLEYYQRKFQYIHVDEYQDTNRAQYMLVKLLASRFKNLCVVGDSDQSIYKWRGADI 264
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
+ SF KD+ N + I L +NYRST+ I+ AA+ +I N+ R + KN+ T+N+ G+KI
Sbjct: 265 ANILSFEKDYPNAQTIMLEQNYRSTKRILLAANEVISKNLNR-KPKNLWTENAEGNKIFY 323
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI 642
+E + F+ KI E+ S+G S+ IAILYR +V + + I ++I
Sbjct: 324 YRADSEQGEAQFVAGKIKEYISSGKR---SFSDIAILYRTNAQSRVMEEVLLKSNIEYSI 380
Query: 643 -HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKIST 699
G+ FY +K ++ I+A LR DD +RV KR I +DKI+
Sbjct: 381 VGGIKFYDRKEIKDILAYLRLIANPDDDISLQRVINV--------PKRGIGSGSVDKIAN 432
Query: 700 IRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANM 759
+ +S + ++ G ++T+G +E LV+ + + SV +
Sbjct: 433 FAQLHEMSMFEALESIELIGL--SPKITKG-----AIEF-RDLVKNYTQMQEYL-SVTEL 483
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
V + LLE+ D +L + + + Q L ++ +FLS T EE + D+
Sbjct: 484 VEE--LLEKSGYRD-----MLIAEKSIEA--QSRLENIDEFLSV--TKNFEEASEDKSLI 532
Query: 820 GCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
+ L A + I + + + + + SV L T+H +KGLE+ +VF+ E P
Sbjct: 533 AFLTDL-ALVADIDKLDDDGEKAE------SVVLMTLHSAKGLEFPVVFLLGLEEGVFP- 584
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD---ANWQLLQPSRFLKEIP 936
+ + + +EEERRL YV +TRA ++L+I M + PSRF+KEIP
Sbjct: 585 ----HSRSLMEESEMEEERRLAYVGITRAEEELYITNAQMRTLFGRTNMNPPSRFIKEIP 640
Query: 937 HHL 939
L
Sbjct: 641 ADL 643
>gi|168213169|ref|ZP_02638794.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens CPE str.
F4969]
gi|170715249|gb|EDT27431.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens CPE str.
F4969]
Length = 751
Score = 236 bits (602), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 213/715 (29%), Positives = 344/715 (48%), Gaps = 103/715 (14%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASE 293
LN +Q EAA + +LI+AG GSGK I P NILA+TFT AA E
Sbjct: 7 LNKEQYEAATT-IDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTNKAAGE 65
Query: 294 MRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVR 353
MR+R+ S+VG+ A + ISTFHS +++ R +KL + +F IY Q+ I ++
Sbjct: 66 MRERVKSLVGE-VANNMWISTFHSSCVRILRREIDKLGYSKDFTIYDSSDQKTLIKLVMK 124
Query: 354 LLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
L NEK + TD L G G + ++ S SFK + F ++
Sbjct: 125 ELNINEKEI------TD-LEILGTIGKAKDNIQ--------SAQSFKKENESNFRKN--- 166
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
KI D A +L Y L+ NALD+ DLI +V+L +V + Y
Sbjct: 167 -------------KIAD---AYLL--YQKKLKENNALDFDDLIVKTVELFRKHNDVLEFY 208
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ +K I++DE+QDT+ QY ++LA+ H I +VGDDDQ I+++ GADI F KD
Sbjct: 209 QNKFKYIMIDEYQDTNKAQYEFAKLLAAKHKNICVVGDDDQCIYAWRGADIRNILDFEKD 268
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
+ K ++L +NYRS I+EAA+ +I++N +R + K ++T+ G KI I +++ +
Sbjct: 269 YPEAKVVKLEQNYRSKGNILEAANKVIKNNAER-KFKILRTEQVEGEKISIHRAYSDKME 327
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
AF++ +I + S+ Y A+LYR + F+ A R IP+ I G+ FY +
Sbjct: 328 AAFVVSEIEKLKSDKG---YKYKDFAVLYRTNAQSRNFEEALRRAGIPYRIFGGLKFYDR 384
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
K ++ I+A L+ + D RR+ + ++ ++ + +T + +
Sbjct: 385 KEIKDILAYLKIIVNPKDSISLRRIIN---VPKRSIGDTTVEKLQNHATEIDDTLYNVLL 441
Query: 711 DIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRA 770
D+ + G RS + +K + +E I ++ + S+S +I +Y+LE+
Sbjct: 442 DV--DYVPGLTARS-INPIKKFIDMMEEIM-VMSEQLSVSQLI---------EYVLEKTG 488
Query: 771 VVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLK-AFI 829
+ L ED L+ L++D +F E + ++DK + K A +
Sbjct: 489 YLKSLKDSKLIEDQSRIENLEELVSDAVEF----------EKSNEEDKSLSAYLEKVALV 538
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
+ + E E +N V L T+H SKGLE+ VF+ P N A E
Sbjct: 539 QDMDDLEAE---------DNYVMLMTVHSSKGLEFPTVFLVGMENGIFP-----NAACFE 584
Query: 890 KGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHHLRE 941
+EE RRL YV +TRA +KL++ M+ S F+ EIP ++++
Sbjct: 585 HDNQMEEARRLCYVGITRAEEKLYMTSAETRMIFGKTVAYGQSDFISEIPANIKD 639
>gi|374601019|ref|ZP_09674021.1| UvrD/REP helicase [Myroides odoratus DSM 2801]
gi|423326154|ref|ZP_17303993.1| hypothetical protein HMPREF9716_03350 [Myroides odoratimimus CIP
103059]
gi|373912489|gb|EHQ44338.1| UvrD/REP helicase [Myroides odoratus DSM 2801]
gi|404604470|gb|EKB04098.1| hypothetical protein HMPREF9716_03350 [Myroides odoratimimus CIP
103059]
Length = 780
Score = 236 bits (602), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 210/736 (28%), Positives = 335/736 (45%), Gaps = 138/736 (18%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
Y+ LN+ Q A P++++AG GSGK G+ NIL++TFT
Sbjct: 4 YIDQLNEAQ-RAPVLQKDGPMIVIAGAGSGKTRVLTLRIAYLMHQGVDAFNILSLTFTNK 62
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++RI IVG + A+ L + TFHS ++ R+ A+ L S F IY +R I
Sbjct: 63 AAREMKNRIAQIVGNSEARNLWMGTFHSVFARILRAEADHLGYPSNFSIYDSQDTQRLIG 122
Query: 350 EAVRLLENEKIL-----VVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYN 404
+ ++ L+ +K + V RIST + +L + A
Sbjct: 123 QIIKELQLDKDVYKPKEVASRIST-----------YKNNLVTVKAY-------------- 157
Query: 405 KFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLST 464
F + A A K P +IG+ I E+Y A+D+ DL+ + +LL+
Sbjct: 158 -FNDQELQEADAMSKRP----RIGE-----IYEHYVERCFKAGAMDFDDLLLKTNELLTR 207
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADIS 523
FP+V +YQD ++ I+VDE+QDT+ QY +++ L+ I +VGDD QSI++F GA+I+
Sbjct: 208 FPDVLAKYQDRFRYILVDEYQDTNNSQYLIVRALSDRFQNICVVGDDAQSIYAFRGANIN 267
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
+F+KDF N + RL +NYRS++ IVEAA+++I N + + K V TDN G KI +
Sbjct: 268 NILNFQKDFDNVQTYRLEQNYRSSKNIVEAANTIIDKNKVKLE-KVVWTDNDFGPKIKVH 326
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH 643
+ + F+ I E + + AILYR + + A R+R IP+ I+
Sbjct: 327 RSLTDGEEGRFVASTIFEEKMQNQKNNSDF---AILYRTNAQSRAMEDALRKRDIPYRIY 383
Query: 644 -GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRK 702
G++FY++K ++ +++ LR + D+ E RVI++ +
Sbjct: 384 GGLSFYQRKEIKDVLSYLRLIINPKDE---------------EALVRVINYPARGIGATT 428
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISA----VITSVAN 758
++ A + +KRS E+++ + + + I+A +T N
Sbjct: 429 LDKLTIAAN--------HYKRS----------IFEVMTHIDKIDLKITAGTKNKLTDFVN 470
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
MV LE+ D +++ ++Q L D T T+ +E
Sbjct: 471 MVKAFQALEETK----DAYEMVEHVVKKTGLVQELRKDTTPEGITRMENIEE-------- 518
Query: 819 KGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTT----------------IHQSKGL 862
+N +K FI+ +RE + R + V L T IH +KGL
Sbjct: 519 --LLNGIKDFIE--GQREIDGARGALSEFLEDVALATDLDKDTGDDDRVALMTIHLAKGL 574
Query: 863 EWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDAN 922
E+ VF E P N T +EEERRL YVA+TRA + ++ Y
Sbjct: 575 EFPTVFCVGMEEDLFPSAMSSNTR-----TELEEERRLFYVALTRAEHQAYLTYAQSRYR 629
Query: 923 WQLL---QPSRFLKEI 935
W L PSRF++EI
Sbjct: 630 WGKLIDCDPSRFIQEI 645
>gi|402838882|ref|ZP_10887382.1| putative ATP-dependent DNA helicase PcrA [Eubacteriaceae bacterium
OBRC8]
gi|402271805|gb|EJU21039.1| putative ATP-dependent DNA helicase PcrA [Eubacteriaceae bacterium
OBRC8]
Length = 723
Score = 236 bits (602), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 215/736 (29%), Positives = 339/736 (46%), Gaps = 145/736 (19%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN++Q +A LLI+AG GSGK ++P NILA+TFT
Sbjct: 3 LDKLNEKQKQAVIT-TDGALLILAGAGSGKTRVITNKIAYLIEEKNVNPYNILAITFTNK 61
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ R+ ++G +K + ISTFH+F ++ R A + + F IY Q ++ +I
Sbjct: 62 AAKEMQSRVEDLIG-IDSKRVWISTFHAFCTRILRYEASHILYENNFTIY-DTQDKQVLI 119
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ D+L GY + +L + + S + + + +E
Sbjct: 120 KNC---------------MDIL------GYDKETLNIASVASEISRAKDSMVSVDDYE-- 156
Query: 410 GMDVAKASGKTPAEFR--KIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ +++R KI A + Y L+ NA+D+ DLI ++L E
Sbjct: 157 --------AEATSDYRNSKI-----ARVYRLYQEELKKNNAMDFDDLIYNCIRLFKLHKE 203
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFD 526
V +YQD ++ I+VDE+QDT+ QY L+++L+ H I +VGDDDQSI+ + GADI
Sbjct: 204 VLGKYQDKFEYIMVDEYQDTNYSQYLLIKMLSQKHKNICVVGDDDQSIYGWRGADIRNIL 263
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
F KDF N +I+L +NYRST I+ AA ++I++N R K + T + +G KI I E
Sbjct: 264 EFEKDFENVIQIKLEQNYRSTSNIINAAGTVIKNNEGRKD-KKIWTSSDNGDKITIYEAT 322
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GV 645
+E+ + ++ I + G Y A+LYR + ++ AF + KIP+ I G+
Sbjct: 323 SENDESLYVAQNIRKLTEQG----YKYSDFAVLYRANALSRKYEEAFMKYKIPYKIFGGL 378
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVF---------KAFLLLEKEEKKRVIDHIDK 696
FY + ++ I+A LR DD +R+ K LE+ ++ I +D
Sbjct: 379 KFYDRMEIKDILAYLRLIDNKNDDVSLKRIINVPKRGIGAKTVEKLEQYAREHSISMLDS 438
Query: 697 ISTIRKCSFISAACDIFGA-KISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITS 755
I I + I GA K + K+ + G L+ +K++ + VI+S
Sbjct: 439 IEYISQ---------IIGAGKAQESIKKFAVMIG-----ALKAFAKILPVSELLEKVISS 484
Query: 756 VANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLL-----ADVTDFLSTKFTAAKE 810
+ L+E++ + L N+L+SV+Q ++DFL A
Sbjct: 485 TN---YENSLIEEKTP---ESQSRLENINELKSVIQEFERTSEDKSLSDFLQN----ATL 534
Query: 811 EGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVA 870
++D+D K N TL TIH +KGLE+ +VF+
Sbjct: 535 STDMDEDDKKS---------------------------NYATLMTIHSAKGLEFPVVFIV 567
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANW 923
A E P ++E + +EEERRL YVA+TRA++KLFI LY + N
Sbjct: 568 AAEENIFP---SSRSVLDE--SKLEEERRLCYVAITRAKEKLFITRAKSRLLYGKTNCNL 622
Query: 924 QLLQPSRFLKEIPHHL 939
SRF+ EI L
Sbjct: 623 ----SSRFISEIDKDL 634
>gi|389866440|ref|YP_006368681.1| ATP-dependent DNA helicase pcrA [Modestobacter marinus]
gi|388488644|emb|CCH90222.1| ATP-dependent DNA helicase pcrA [Modestobacter marinus]
Length = 763
Score = 236 bits (602), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 210/723 (29%), Positives = 328/723 (45%), Gaps = 106/723 (14%)
Query: 240 EYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAM 284
E + L LN Q +A + S PLLIVAG GSGK G+ P ILA+
Sbjct: 25 ELDRMLAGLNGPQRDAVVHEGS-PLLIVAGAGSGKTRVLTHRISYLLGARGVQPGEILAI 83
Query: 285 TFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQ 344
TFT AA EM++R+ ++VG A+ + +STFHS +++ R+ A KL S F IY G
Sbjct: 84 TFTNKAAGEMKERVAALVGP-RARAMWVSTFHSMCVRILRAEAAKLGMKSSFTIYDQG-- 140
Query: 345 RRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYN 404
++VRL+ +V + + D G S+++ Q +
Sbjct: 141 -----DSVRLM----TMVARDLDLDAKRYPGR-----------------SLAN----QVS 170
Query: 405 KFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLST 464
+ + +D S T E K+ E A L Y LR +A+D+ DLI +V LL
Sbjct: 171 NLKNELVDEESYSPLTAPE--KVLKE--AYTL--YQRRLREAHAMDFDDLIMTTVHLLQA 224
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-------HNRITIVGDDDQSIFSF 517
FP+V + Y+ ++ ++VDE+QDT+ QY L++ L + +VGD DQSI++F
Sbjct: 225 FPDVAEHYRRRFRHVLVDEYQDTNHAQYVLVRELVGTAGGPVPPAELCVVGDADQSIYAF 284
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GA I D F +D+ I L +NYRST+ I+ AA+ +I N R + KN+ +D G
Sbjct: 285 RGATIRNIDEFERDYPEATTIVLEQNYRSTQRILRAANQVIARNTSR-RPKNLWSDAGDG 343
Query: 578 SKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERK 637
I NE + A++ ++I G + IAI YR + +VF+ F
Sbjct: 344 ELIEGYVADNEHDEAAWVAEQIDALTDEG---LAQPKDIAIFYRTNNASRVFEEVFIRVG 400
Query: 638 IPFNI-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDK 696
+P+ + GV FY ++ VR +A L+ D RRV ++ +R +++
Sbjct: 401 MPYKVVGGVRFYERREVRDALAYLKVVANPADVVSLRRVLNT---PKRGIGERAESAVER 457
Query: 697 ISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSV 756
+ + F SA + A G L ++ + LE +LV +A++ S+
Sbjct: 458 FADRERIPFASA---LRRAAEVGELATRSLKAIQEFVALLEEFEQLVETGSGPAALLESI 514
Query: 757 ANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQ 816
+ YL E A D ++ N+L SV + +F A G V
Sbjct: 515 LDRT--GYLTELSASTDPQDEGRVDNLNELISV------------AAEFEAGTPGGTVTD 560
Query: 817 DKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
F++ +S D+ VTL T+H +KGLE+ +VF+ +
Sbjct: 561 -----------FLEQVSLVADADQIPVTGDDAGVVTLMTLHTAKGLEFPVVFLTALEDGV 609
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSRFLK 933
P + +EEERRL YV +TRA+K+LF+ + +W PSRFL
Sbjct: 610 FPHLRALGDP-----RELEEERRLAYVGITRAQKRLFLSRATVRTSWGQPAYNPPSRFLD 664
Query: 934 EIP 936
E+P
Sbjct: 665 ELP 667
>gi|78045143|ref|YP_359945.1| ATP-dependent DNA helicase PcrA [Carboxydothermus hydrogenoformans
Z-2901]
gi|77997258|gb|ABB16157.1| ATP-dependent DNA helicase PcrA [Carboxydothermus hydrogenoformans
Z-2901]
Length = 718
Score = 236 bits (601), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 223/735 (30%), Positives = 340/735 (46%), Gaps = 132/735 (17%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFT 287
K L +LN Q EA PLL++AG G+GK P ILA+TFT
Sbjct: 3 KLLATLNPAQREAVT-HTHGPLLVLAGAGTGKTRVLTFRIAHLLYRKMAYPHEILAITFT 61
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM++R+ ++ +A+E+ ISTFHSF+L++ R+ EKL + +F +Y Q +
Sbjct: 62 NKAAREMKERVERLIS-GSAREIWISTFHSFALRILRNDIEKLGFSRDFTVYDEEDQLQV 120
Query: 348 IIEAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
I E ++ L ++K K I+ + S + KL ++
Sbjct: 121 IKECLKELNIDDKRFAPKAIAYHI-----------------------SSAKDKLISPRQY 157
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
D D+ K E A I Y L NALD+ DL+ +V+L +P
Sbjct: 158 RDDADDLFK--------------EKVAIIYNMYQEKLNKNNALDFDDLLYYAVRLFENYP 203
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGF 525
V + YQ +K I+VDE+QDTS QY L+ +LA H + +VGD DQSI+S+ GADI+
Sbjct: 204 RVLEYYQRRFKYILVDEYQDTSHAQYRLVNLLAQKHRNLCVVGDPDQSIYSWRGADITNI 263
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
+F +D+ K + L NYRST+ I++AA+++I N R + + T S G +
Sbjct: 264 LNFERDYPEAKVVILKENYRSTQKILDAANAVIAKNRMRKEKELFSTKES-GHPVYFYPA 322
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGV 645
+E + AF+ I +G ++ IA+LYR + F+ AF +R IP+ I G
Sbjct: 323 VDEKDEAAFVALTIESLVKSGE---YNFNDIALLYRTHALSRNFEEAFMQRGIPYVIFGS 379
Query: 646 -AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCS 704
FY +K ++ IIA LR PY +V KR+I+ + I + S
Sbjct: 380 RRFYDRKEIKDIIAYLRIVA-----NPYDKV----------ALKRIINEPKR--GIGEAS 422
Query: 705 F--ISAACDIFGAKISGTFKRSQ---LTQG--RKVLLTL-EMISKLVRREPSISAVITSV 756
F + A D G I R + L G RK L EM+ L RE +T +
Sbjct: 423 FAKVEAYADETGLPIGLLLLRDEALALVSGKTRKALKEFGEML--LWFRELKDRVSVTKL 480
Query: 757 ANMVPQK--YLLEQRAVVDFDGGKLLNEDN-DLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
+ ++ YL +A ED + R+ ++ ++ +FL+ T A E +
Sbjct: 481 TEEILERSGYLPALKA-----------EDTMEARARIE----NLNEFLTV--TQAFERES 523
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
D+ + + + D +E EN V + T+H +KGLE+ +VF+
Sbjct: 524 EDKSLEAFLGTISLLTDADTE----------EGGENRVRMMTLHAAKGLEFPVVFLVGLE 573
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLL 926
E P H + +EEERRL YV +TRA+K+L++ +Y D N
Sbjct: 574 EGIFP--HS-RAIFSIDPQELEEERRLCYVGITRAQKRLYLTRAWRRTVYGRTDFN---- 626
Query: 927 QPSRFLKEIPHHLRE 941
+PSRFL EIP L E
Sbjct: 627 EPSRFLDEIPEELIE 641
>gi|403669974|ref|ZP_10935150.1| ATP-dependent DNA helicase pcrA [Kurthia sp. JC8E]
Length = 750
Score = 236 bits (601), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 212/751 (28%), Positives = 340/751 (45%), Gaps = 131/751 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSG---------------KGISPSNILAMTFTTA 289
L +N +Q +A PLLI+AG GSG K ++P NILA+TFT
Sbjct: 9 LNGMNPEQAQA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLVIEKAVNPWNILALTFTNK 67
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+RI ++G T +++ +STFHS +++ R +++ F I Q
Sbjct: 68 AAREMRERIDGLLGNGTGQQMWVSTFHSMCVRILRRDIDRIGFNKNFTILDSTDQ----- 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFK--LCQYNKFE 407
+ +++N V+K ++ D D ML ++SS K Y ++
Sbjct: 123 --LTVIKN----VLKELNIDPKQYDPR-------------MLLNAVSSAKNECTTYREYR 163
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
A +S P E + I D + E Y L +LD+ DLI +++L PE
Sbjct: 164 ------AASSDANPYE-KTIAD-----VYEAYQRRLEKNQSLDFDDLIMTTIRLFKEVPE 211
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFD 526
V + YQ+ ++ I VDE+QDT+ QY L+Q+LAS I +VGD DQSI+ + GADI
Sbjct: 212 VLEFYQNKFQYIHVDEYQDTNHSQYELVQMLASKFQNICVVGDSDQSIYRWRGADIGNIL 271
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
SF KD+ K I L +NYRST+ I+ AA+S+I++N R K ++TDN G+KIII +
Sbjct: 272 SFEKDYPTAKTIMLEQNYRSTKTILAAANSVIKNNSSRFP-KELRTDNQEGNKIIINRAY 330
Query: 587 NEDAQCAFIIDKILE-HASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HG 644
+E + F++ I E S G AILYR +V + + + + I G
Sbjct: 331 DEKTEAQFVVKTIQELMLSEG----YKEDDFAILYRTNAQSRVMEEMLVKSNMNYTIVGG 386
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRV------------FKAFLLLEKEEKKRVID 692
FY +K ++ ++A LR DD R+ F + E+ + + D
Sbjct: 387 TKFYDRKEIKDLLAYLRLIANNDDDLALARIINEPKRSIGATSFDRMMQFAIEQDRTIFD 446
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV 752
+R+ F+ + + I + TQ + + E++ +++ +
Sbjct: 447 ------ALREVDFMGLSGRATNSAIHFRAMIERFTQMQDFMSVTELVEEVLEK------- 493
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
+ M+ + +E + L ++ +FL+ T E+
Sbjct: 494 -SGYREMLKAEKTIEAES----------------------RLENINEFLTV--TQTFEQA 528
Query: 813 NVDQDKKGCIN--VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVA 870
+ D+ + L A ID + + E E L T+H +KGLE+ +VF+
Sbjct: 529 SDDKSLIAFLTDLALVADIDKLGDEEEEV--------SGGTVLMTMHSAKGLEFPVVFII 580
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQ 927
E P H + N++ +EEERRL YV +TRA K+L++ M +
Sbjct: 581 GMEENIFP--HSRSLMDNDE---MEEERRLAYVGITRAEKQLYLSCAQMRTLYGRSSFNS 635
Query: 928 PSRFLKEIPHH-LREVQAEQSVQDQHENIPE 957
PSRFLKEI L E A++S Q + P+
Sbjct: 636 PSRFLKEIDAELLEETIAKRSSQSGSYSAPK 666
>gi|90019833|ref|YP_525660.1| ATP-dependent DNA helicase Rep [Saccharophagus degradans 2-40]
gi|89949433|gb|ABD79448.1| ATP-dependent DNA helicase Rep [Saccharophagus degradans 2-40]
Length = 672
Score = 235 bits (600), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 195/714 (27%), Positives = 335/714 (46%), Gaps = 97/714 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ +LN +Q EA + P L++AG GSGK GI +I A+TFT
Sbjct: 1 MTTLNPRQKEAVHY-IDGPSLVLAGAGSGKTSVITRKIAYMIQECGIPARHIAAVTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +V + A+ LT+STFH+ L + R + L S F I+ + R +I
Sbjct: 60 AAREMKERVTKLVKGSAARGLTVSTFHNLGLNIIRREHKTLGFKSGFTIFDQ-EDARGLI 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ + L + + +TDM+ Q + ++
Sbjct: 119 KEIMLKDGD-------TNTDMI-------------------------DLVQSQISNWKNG 146
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
++ +A K +E G++ A + E YN L++ NA+D+ DLI KL S PEV
Sbjct: 147 LIEPDEALSKAQSE----GEQTWALVFERYNKALKAYNAVDFDDLIRLPSKLFSEHPEVL 202
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLL-QILASHNRITIVGDDDQSIFSFNGADISGFDSF 528
+Q + ++VDE+QDT++ QY ++ Q++ +T+VGDDDQSI+++ GA
Sbjct: 203 NRWQQRIRYLLVDEYQDTNSSQYKVVQQLIGDRGTLTVVGDDDQSIYAWRGARPENMSLL 262
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
+ DF + I+L +NYRST I++AA+ LI +N K + +D G I + +C E
Sbjct: 263 KVDFPSLHVIKLEQNYRSTARILKAANVLIANNPHEFD-KTLWSDLGMGETIRVIKCPTE 321
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAF 647
DA+ + +IL C + A+LYR ++ + + +IP+NI G +F
Sbjct: 322 DAEAERVATEILTQRLR---RQCKFKDFAVLYRGNHQARLMELKLQHHQIPYNISGGTSF 378
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
+ + ++ I+ LR DD + RV ++ ++ + + ST R S +
Sbjct: 379 FARAEIKDIMGYLRLIANPADDNAFLRVVNT---PRRQIGTGTLEALGRYSTERDIS-LW 434
Query: 708 AACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLE 767
AACD G + L+ + + ++ + +++V ++ N P + + E
Sbjct: 435 AACDEMGL---------------QALIPKQGLERIRKFSGWLNSVRSNCHNGDPVQAIRE 479
Query: 768 QRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN--VL 825
+D++G L+++ V + +V + + + + + N D D + IN +
Sbjct: 480 MIDDIDYEG--WLHQNASSPKVAEKRFENVNILVESIKNSLERDENEDADGEERINTAIS 537
Query: 826 KAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNG 885
K + + ER+ E T R V L T+H SKGLE+ VF+ E +P
Sbjct: 538 KLLLQDMLERQEEEDETDR------VQLMTLHASKGLEFPHVFLLGLEEEILP----HRN 587
Query: 886 AVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSRFLKEIP 936
++ E ++EEERRL YV +TRA++ L + + Q PSRFL E+P
Sbjct: 588 SIEED--NIEEERRLAYVGITRAQRTLTMTLAGTRKQFGEKQTTTPSRFLDELP 639
>gi|392969922|ref|ZP_10335333.1| ATP-dependent DNA helicase PcrA [Staphylococcus equorum subsp.
equorum Mu2]
gi|403046134|ref|ZP_10901608.1| ATP-dependent DNA helicase [Staphylococcus sp. OJ82]
gi|392512069|emb|CCI58534.1| ATP-dependent DNA helicase PcrA [Staphylococcus equorum subsp.
equorum Mu2]
gi|402764082|gb|EJX18170.1| ATP-dependent DNA helicase [Staphylococcus sp. OJ82]
Length = 736
Score = 235 bits (600), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 207/730 (28%), Positives = 344/730 (47%), Gaps = 127/730 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ +N++Q +A PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 VNKMNEEQSQA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ R+ ++VG+ A+ L +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAKEMKARVETLVGEQ-AQVLWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I S M ++S+ K N+
Sbjct: 123 D---VLKNENI---------------------DSKKFEPRMFIGAISNLK----NEL--- 151
Query: 410 GMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP + +K + ++ A + + Y L ALD+ DLI +++L
Sbjct: 152 ---------KTPEDAQKEANDYHAQMVATVYKGYQRQLSRNEALDFDDLIMITIRLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV YQ+ ++ I VDE+QDT+ QY+L+++LA+ + +VGD DQSI+ + GADI
Sbjct: 203 PEVLDYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ K + L +NYRST+ I+ AA+ +I++N +R + K + T N+ G KI E
Sbjct: 263 ILSFEEDYPEAKTVFLEQNYRSTKNILNAANEVIKNNSER-KPKGLWTGNTDGDKIHYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++H NG Y +AILYR +V + F + +P+ +
Sbjct: 322 ATTERDEAEYVVREIMKHQRNGK----KYKDMAILYRTNAQSRVLEETFMKSNLPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID--HIDKISTIR 701
G FY +K ++ +++ +R DD RRV KR I +DKI T
Sbjct: 378 GQKFYDRKEIKDLLSYVRIIANSNDDISLRRVINI--------PKRGIGPTSVDKIQTYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ +S + G K+ +T E I+ + N++
Sbjct: 430 MQNDLSMFDALAEVDFIGLSKK----------VTQECIN-----------FYDVMQNLIK 468
Query: 762 QKYLLEQRAVVD---FDGG--KLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQ 816
Q+ LE +V+ G +L + L S + L ++ +F+S E N
Sbjct: 469 QQEFLEITEIVEEVLVKSGYRDMLEREQTLES--RSRLENIDEFMS---VPKDYEENTPL 523
Query: 817 DKKGCINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
+++ IN L + + I E + E+ +TL T+H +KGLE+ IVF+ E
Sbjct: 524 EEQSLINFLTDLSLVADIDEAQI----------EDGITLMTMHSAKGLEFPIVFIMGMEE 573
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRF 931
+ P + +++ ++EERR+ YVA+TRA + L++ + M+ Q SRF
Sbjct: 574 SLFPHIRAIK---SDEEHEMQEERRICYVAITRAEETLYLTHATSRMLFGRPQSNMASRF 630
Query: 932 LKEIPHHLRE 941
L+EIP L E
Sbjct: 631 LREIPEDLLE 640
>gi|383818296|ref|ZP_09973593.1| ATP-dependent DNA helicase PcrA [Mycobacterium phlei RIVM601174]
gi|383339225|gb|EID17566.1| ATP-dependent DNA helicase PcrA [Mycobacterium phlei RIVM601174]
Length = 773
Score = 235 bits (600), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 216/736 (29%), Positives = 335/736 (45%), Gaps = 107/736 (14%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFT 287
+ L LN QQ +A +PLLIVAG GSGK + +LA+TFT
Sbjct: 17 QLLDGLNPQQRQAVL-HQGSPLLIVAGAGSGKTAVLTRRIAYLLAARDVGVGQVLAITFT 75
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRR 346
AA+EMR+R+ +VG A+ + +STFHS +++ R+ A ++ S F IY RR
Sbjct: 76 NKAAAEMRERVVQLVGP-RARSMWVSTFHSTCVRILRNQASLIKGLNSNFSIYDADDSRR 134
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
++ ++ + L KR S +L +S+ K +
Sbjct: 135 LLM----MIGKDMGLDTKRYSPRLLAN--------------------GISNHK-NELVGP 169
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
E+ + A+A + PA I A + Y LR+ NALD+ DLI +V +L FP
Sbjct: 170 EQAAAEAAEAGEELPA--------IIAEVYGEYQRRLRAANALDFDDLIGETVGVLQAFP 221
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH--------NRITIVGDDDQSIFSFN 518
++ Q Y+ ++ I+VDE+QDT+ QY L++ L + + +VGD DQSI++F
Sbjct: 222 QIAQYYRRRFRHILVDEYQDTNHAQYVLVRELVGAETVDGLEPSELCVVGDADQSIYAFR 281
Query: 519 GADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGS 578
GA I + F +DF N I L +NYRST+ I+ AA+++I N R + K + TD G
Sbjct: 282 GATIRNIEDFERDFPNATTILLEQNYRSTQNILNAANAVISRNPGRRE-KRLWTDEGDGE 340
Query: 579 KIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKI 638
I+ NE + F+ +I A G SY A+ YR S + + F I
Sbjct: 341 LIVGYVADNEHDEARFVASEIDRLADQG----YSYNDFAVFYRTNNSSRALEEVFIRAGI 396
Query: 639 PFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKI 697
P+ + GV FY ++ +R I+A LR D RR+ ++ + D +
Sbjct: 397 PYKVVGGVRFYERREIRDIVAYLRVLDNPNDSVSMRRILNT-------PRRGIGDRAEAC 449
Query: 698 STI----RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI 753
+ CSF A ++ RS+ V + E+ KL + + ++
Sbjct: 450 VAVYAENTGCSFNEALAAAAEGRVPMLNTRSEKAIASFVNMLDELRGKL---DEELGELV 506
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
+V + LE + D L+ N+L SV D+ + A +E
Sbjct: 507 EAVLERTGYRRELESSS--DPQDLARLDNLNELVSVAHEFSTDLAN-----AQALADEEQ 559
Query: 814 VDQDKKGCINVLKAFIDYIS-----ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVF 868
D+D +VL F++ +S + EH VTL T+H +KGLE+ +VF
Sbjct: 560 ADEDIPDT-SVLAQFLERVSLVADADELPEH-------GAGVVTLMTLHTAKGLEFPVVF 611
Query: 869 VAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW--QLL 926
V + P + + EERRL YV +TRAR++LF+ + ++W +L
Sbjct: 612 VTGWEDGMFPHMRALGDP-----AELSEERRLAYVGITRARQRLFLTRAKVRSSWGQPML 666
Query: 927 QP-SRFLKEIPHHLRE 941
P SRFLKEIP HL E
Sbjct: 667 NPESRFLKEIPQHLIE 682
>gi|433609553|ref|YP_007041922.1| ATP-dependent DNA helicase PcrA [Saccharothrix espanaensis DSM
44229]
gi|407887406|emb|CCH35049.1| ATP-dependent DNA helicase PcrA [Saccharothrix espanaensis DSM
44229]
Length = 772
Score = 235 bits (600), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 215/740 (29%), Positives = 338/740 (45%), Gaps = 109/740 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L LN Q A +PLL+VAG GSGK + P I+A+TFT
Sbjct: 20 LDDLNPAQ-RRAVEHAGSPLLVVAGAGSGKTRVLTRRIAYLLGERKVHPGEIMAITFTNK 78
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM++R+ +VG A A+ + +STFHS +++ R + L +S F IY RR I
Sbjct: 79 AAAEMKERVADLVG-ARARSMWVSTFHSMCVRVMRRDGKTLGLSSSFSIYDSDDTRRLIT 137
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R L+ L KR L H ++ L
Sbjct: 138 LVARDLD----LDPKRYPARTLAI--HISNLKNELV------------------------ 167
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
++ AKA E R A + E+Y L N+LD+ DLI +V+LL FP V
Sbjct: 168 DVETAKAQAGNDLERRV------AEVYESYQRRLTESNSLDFDDLIMRTVELLQNFPAVA 221
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-------RITIVGDDDQSIFSFNGADI 522
+ Y+ ++ ++VDE+QDT+ QY+L++ L + +VGD DQSI++F GA I
Sbjct: 222 EHYRRRFRHVLVDEYQDTNHAQYTLVRELVGTGEGGVPPAELCVVGDADQSIYAFRGATI 281
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
F +D+ I L +NYRST+ I+ AA+++I N R K + +D G KI+
Sbjct: 282 RNIVEFERDYPQATTILLEQNYRSTQRILTAANAVISRNPNRRD-KRLWSDLGDGEKIVG 340
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN- 641
NE + AF+ +I G A + G IA+ YR +VF+ F +P+
Sbjct: 341 YVADNEHDEAAFVAREIDRLVDGGDA---TNGEIAVFYRTNNQSRVFEEIFIRLGLPYRV 397
Query: 642 IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDK-ISTI 700
+ GV FY ++ VR +A LRT D RR+ K+ + D + +ST
Sbjct: 398 VGGVRFYERREVRDALAYLRTLANPDDTVSLRRILNV-------PKRGIGDRAEACVSTY 450
Query: 701 ---RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVA 757
+ SF +A + K+ RSQ V L L+ + LV R ++ V+ +V
Sbjct: 451 AERERISFAAALREAVRGKVPLLNPRSQRAIAGFVEL-LDELGALVERGDDVADVLEAVL 509
Query: 758 NMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFT--AAKEEGNVD 815
+ + LE +ED + ++ L VT ++ +FT A +G +
Sbjct: 510 DRTAYRAELEA------------SEDPQDHTRVENLNELVT--VAREFTDLGAAAQGPTE 555
Query: 816 QDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANET 875
+ L AF++ ++ + + +++ VTL T+H +KGLE+ +VF +
Sbjct: 556 DEGLPAEGSLAAFLERVA-LVADADQVPDAESDGVVTLMTLHTAKGLEYPVVFGTGWEDG 614
Query: 876 EIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQP-----SR 930
P + V + EERRL YV +TRA+++L++ ++ + W QP SR
Sbjct: 615 VFPHLRALGDPVE-----LAEERRLAYVGITRAQQRLYLSRALVRSAWG--QPSANPASR 667
Query: 931 FLKEIPHHL---REVQAEQS 947
FL EIP L R V+ ++S
Sbjct: 668 FLDEIPAELVEWRRVEPQRS 687
>gi|363891928|ref|ZP_09319102.1| ATP-dependent DNA helicase PcrA [Eubacteriaceae bacterium CM2]
gi|361964752|gb|EHL17763.1| ATP-dependent DNA helicase PcrA [Eubacteriaceae bacterium CM2]
Length = 723
Score = 235 bits (600), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 214/736 (29%), Positives = 339/736 (46%), Gaps = 145/736 (19%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN++Q +A LLI+AG GSGK ++P NILA+TFT
Sbjct: 3 LDKLNEKQKQAVIT-TDGALLILAGAGSGKTRVITNKIAYLIEEKNVNPYNILAITFTNK 61
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ R+ ++G +K + ISTFH+F ++ R A + + F IY Q ++ +I
Sbjct: 62 AAKEMQSRVEDLIG-IDSKRVWISTFHAFCTRILRYEASHILYENNFTIY-DTQDKQVLI 119
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ D+L GY + +L + + S + + + +E
Sbjct: 120 KNC---------------MDIL------GYDKETLNIASVASEISRAKDSMVSVDDYE-- 156
Query: 410 GMDVAKASGKTPAEFR--KIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ +++R KI A + Y L+ NA+D+ DLI ++L E
Sbjct: 157 --------AEATSDYRNSKI-----ARVYRLYQEELKKNNAMDFDDLIYNCIRLFKLHKE 203
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFD 526
V +YQD ++ I+VDE+QDT+ QY L+++++ H I +VGDDDQSI+ + GADI
Sbjct: 204 VLGKYQDKFEYIMVDEYQDTNYSQYLLIKMISQKHKNICVVGDDDQSIYGWRGADIRNIL 263
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
F KDF N +I+L +NYRST I+ AA ++I++N R K + T + +G KI I E
Sbjct: 264 EFEKDFENVIQIKLEQNYRSTSNIINAAGTVIKNNEGRKD-KKIWTSSDNGDKITIYEAT 322
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GV 645
+E+ + ++ I + G Y A+LYR + ++ AF + KIP+ I G+
Sbjct: 323 SENDESLYVAQNIRKLTEQG----YKYSDFAVLYRANALSRKYEEAFMKYKIPYKIFGGL 378
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVF---------KAFLLLEKEEKKRVIDHIDK 696
FY + ++ I+A LR DD +R+ K LE+ ++ I +D
Sbjct: 379 KFYDRMEIKDILAYLRLIDNKNDDVSLKRIINVPKRGIGAKTVEKLEQYAREHSISMLDS 438
Query: 697 ISTIRKCSFISAACDIFGA-KISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITS 755
I I + I GA K + K+ + G L+ +K++ + VI+S
Sbjct: 439 IENISQ---------IIGAGKAQESIKKFAVMIG-----ALKAFAKILPVSELLEKVISS 484
Query: 756 VANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLL-----ADVTDFLSTKFTAAKE 810
+ L+E++ + L N+L+SV+Q ++DFL A
Sbjct: 485 TN---YENSLIEEKTP---ESQSRLENINELKSVIQEFERTSEDKSLSDFLQN----ATL 534
Query: 811 EGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVA 870
++D+D K N TL TIH +KGLE+ +VF+
Sbjct: 535 STDMDEDDKKS---------------------------NYATLMTIHSAKGLEFPVVFIV 567
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANW 923
A E P ++E + +EEERRL YVA+TRA++KLFI LY + N
Sbjct: 568 AAEENIFP---SSRSVLDE--SKLEEERRLCYVAITRAKEKLFITRAKSRLLYGKTNCNL 622
Query: 924 QLLQPSRFLKEIPHHL 939
SRF+ EI L
Sbjct: 623 ----SSRFISEIDKDL 634
>gi|336396262|ref|ZP_08577661.1| ATP-dependent DNA helicase [Lactobacillus farciminis KCTC 3681]
Length = 746
Score = 235 bits (600), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 213/722 (29%), Positives = 351/722 (48%), Gaps = 120/722 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LN +Q + A PLLI+AG GSGK I P ++LA+TFT
Sbjct: 6 LEGLNPEQ-QKAVKATEGPLLIMAGAGSGKTRVLTHRVAYLIEEKNIMPWHVLAITFTNK 64
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++RIG ++ + +A ++ +STFHS +++ R +K+ + F I +QR +
Sbjct: 65 AAKEMKERIGKLLNE-SAGDVWVSTFHSLCVRILRRDIDKMGKPKTFTIADPSEQRTLM- 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++ILV +++ D D RA L ++S+
Sbjct: 123 --------KQILV--KMNLDPKRYDP-----RA--------LLGTISN------------ 147
Query: 410 GMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
AK +TPAE+ K+ ++ A + + Y + N+LD+ DLI + +L
Sbjct: 148 ----AKNELQTPAEYAKVAATPYEQTVATVYDAYAKEMDRNNSLDFDDLIMQTSELFDQN 203
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLL-QILASHNRITIVGDDDQSIFSFNGADISG 524
P+V ++YQ+ ++ I VDE+QDT+ QY L+ Q+ A + + +VGD DQSI+ + GA+I
Sbjct: 204 PDVLEKYQEKFQYIHVDEYQDTNEAQYKLVKQLGAKYRNVCVVGDADQSIYGWRGANIQN 263
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+F KD+ I+L +NYRST+ I++AA+ +I +N R + K + TDNS G KI
Sbjct: 264 IMNFEKDYPEATTIKLEQNYRSTKTILKAANEVINNNSNR-KPKELWTDNSEGDKIKFYR 322
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
++ + ++ID+I + G +YG A+LYR + F+ + IP+ I
Sbjct: 323 GQSDTDESLYVIDQIKDLLLQG----YNYGDFAVLYRTNAQSRNFEDKLMKANIPYKIIG 378
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTI- 700
G FY +K ++ I+A LR D ++RV + KR I I+K+ T
Sbjct: 379 GHKFYDRKEIKDILAYLRLIANHDDSMSFQRVINS--------PKRGIGPGTIEKLQTFA 430
Query: 701 --RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
S + AA +I + ++ R + + KV+ L +S+ + S++ ++
Sbjct: 431 DEHNWSLLEAAENIELSPLAAK-PRKTIGEFAKVIDDLTKLSE----DQSMTILM----- 480
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFL--STKFTAAKEEGNVDQ 816
+LLE V+ L + N+L S Q + ++ + L +T+F + E +VD
Sbjct: 481 ----DHLLEDSGYVE-----ELKKQNNLES--QARVENIEELLTVTTQFDQSYEP-DVDV 528
Query: 817 DKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
D+ L + E E +++ VTL T+H +KGLE+ +VF+ E
Sbjct: 529 DETRLTTFLTELSLVSDQDEVE-------EDQQEVTLMTLHAAKGLEFPVVFLVGMEEGI 581
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI---LYVMMDANWQLLQPSRFLK 933
PL G K +EEERRL YV +TRA K+L+I + M+ Q SRF+
Sbjct: 582 FPL-----GRSLLKEDDLEEERRLAYVGITRAEKRLYITNAISRMLYGRIQSNPTSRFVN 636
Query: 934 EI 935
EI
Sbjct: 637 EI 638
>gi|403385965|ref|ZP_10928022.1| ATP-dependent DNA helicase pcrA [Kurthia sp. JC30]
Length = 749
Score = 235 bits (599), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 208/731 (28%), Positives = 337/731 (46%), Gaps = 124/731 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +N +Q +A PLLI+AG GSGK ++P NILA+TFT
Sbjct: 9 LNGMNPEQAKAVQA-TDGPLLIMAGAGSGKTRVLTHRIAYLVIEKAVNPWNILAITFTNK 67
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMRDRI ++G + +++ +STFHS +++ R +++ + F I Q
Sbjct: 68 AAREMRDRIDGLLGNGSGQQMWVSTFHSMCVRILRRDIDRIGFSKNFTILDSTDQ----- 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +++N V+K ++ D D RA ++NA+ S + + Y +F+
Sbjct: 123 --LTVVKN----VLKELNIDPKQYDP-----RA---LLNAI---SSAKNECITYREFQ-- 163
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
A A+ P E + + + E Y L +LD+ DLI ++ L PEV
Sbjct: 164 ----ANANQNNPYE------KTVSQVYEAYQRRLEKNQSLDFDDLIMMTIHLFEEVPEVL 213
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ+ + I VDE+QDT+ QY L+++LAS + +VGD DQSI+ + GADI+ SF
Sbjct: 214 DFYQNKFHYIHVDEYQDTNKSQYLLVKLLASKFKNLCVVGDSDQSIYRWRGADITNILSF 273
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N + I L +NYRST+ I+ AA+S+I++N R K ++TDN G+KI + ++E
Sbjct: 274 EKDYPNAQTIMLEQNYRSTKTILAAANSVIKNNASRFP-KELRTDNDIGAKISLNRAYDE 332
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVAF 647
A+ FI+ I E G A AILYR +V + + + + I G F
Sbjct: 333 KAEAQFIVKTIQEKMREGYAE----DDFAILYRTNAQSRVMEEMLVKSNMNYTIVGGTKF 388
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRV------------FKAFLLLEKEEKKRVIDHID 695
Y +K ++ ++A LR DD R+ F+ + E+ + V D +
Sbjct: 389 YDRKEIKDLLAYLRLIANNDDDLALARIINEPKRSIGATSFERMMQFAFEQDRSVFDALK 448
Query: 696 KISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITS 755
++ + + + F + I + TQ + + E++ +++ + +
Sbjct: 449 EVDFMGLSGRATNSAIYFRSMI------ERFTQQQDYMSVTELVEEVLEK--------SG 494
Query: 756 VANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVD 815
M+ + +E + L ++ +FLS T EE + D
Sbjct: 495 YREMLKAEKTIEAES----------------------RLENINEFLSV--TKTFEENSDD 530
Query: 816 QDKKGCIN--VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+ + L A ID + + E E V L T+H +KGLE+ IVF+
Sbjct: 531 KTLIAFLTDLALVADIDQLGKEEEEK-------QTGGVVLMTMHSAKGLEFPIVFIIGME 583
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSR 930
E P H + N++ +EEERRL YV +TRA K+L++ M + PSR
Sbjct: 584 ENIFP--HARSLMDNDE---MEEERRLAYVGITRAEKELYLSCAQMRTLYGRSSFNTPSR 638
Query: 931 FLKEIPHHLRE 941
FL EI L E
Sbjct: 639 FLNEIDSDLIE 649
>gi|116493117|ref|YP_804852.1| ATP-dependent DNA helicase PcrA [Pediococcus pentosaceus ATCC
25745]
gi|116103267|gb|ABJ68410.1| ATP-dependent DNA helicase PcrA [Pediococcus pentosaceus ATCC
25745]
Length = 757
Score = 235 bits (599), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 216/733 (29%), Positives = 340/733 (46%), Gaps = 109/733 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++ LND Q EA PLLI+AG GSGK G++P N+LA+TFT
Sbjct: 7 IKGLNDMQKEA-VQTTEGPLLIMAGAGSGKTRVLTHRVAYLIEEKGVNPWNVLAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+ S++G A E+ +STFH+ +++ R + ++L F I +QR
Sbjct: 66 AAREMRERVTSLLGDEAA-EIWVSTFHALCVRILRRNIDQLGYNRAFSIADPSEQR---- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+VK I D+ F R+ L ++
Sbjct: 121 -----------TLVKHILADLNYDPKKFD-PRSVLGTISN-------------------- 148
Query: 410 GMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
AK KTP +R+ +++ A I E Y L + ALD+ DLI +++L
Sbjct: 149 ----AKNDLKTPLTYRENASTPYEQVVADIYEEYQRRLENNQALDFDDLIMKTIELFQKN 204
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISG 524
PE YQ+ + I VDE+QDT+ QY L+ +LA H R I +VGD DQSI+ + GAD+
Sbjct: 205 PETLSFYQNKFHYIHVDEYQDTNQAQYQLVTMLAKHFRNICVVGDSDQSIYGWRGADMQN 264
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+F D+ + K + L +NYRST+ I+ AA+ +I++NV+R + K + TDN G KI
Sbjct: 265 IMNFESDYPDSKTVMLEQNYRSTQNILNAANDVIENNVER-KPKQLWTDNDEGEKISYYR 323
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF-NIH 643
+ FI+ KI E +YG AILYR +V + F + IP+ +
Sbjct: 324 GQTGIDEAHFIVQKIREQIKEHN---LNYGDFAILYRTNAQSRVIEDTFVKSNIPYLMVG 380
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID--HIDKISTI- 700
G FY +K +R +++ L D + RV E KR I I K+
Sbjct: 381 GHKFYDRKEIRDVLSYLTLIANEDDSMSFERVIN--------EPKRGIGSTSIAKLQAFA 432
Query: 701 --RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
S + AA + A + R+ + K++ L + + +I+ + +V
Sbjct: 433 DENNWSLLKAARSVQIANGISSRARNAIEDFAKMIDALRKSGEFL----NITELTEAVLE 488
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
+ LE+ + + + L ++ ++L VT K A EGN D+
Sbjct: 489 QTGYRAALEK--------SRTMESEARLENIDEFLT--VTKQFDDKNEA---EGNEIADE 535
Query: 819 KGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
G N+ +D++++ + + + VTL T+H +KGLE+ IVF+ + P
Sbjct: 536 NGD-NI--QLVDFLADLALVSDQDNVEEEPSGVTLMTLHAAKGLEFPIVFLVGMEDGIFP 592
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
L A+ ++ +EEERRL YV +TRAR+KL+I M+ Q SRF+ EI
Sbjct: 593 LSR----AMMDQ-EQLEEERRLAYVGITRARQKLYITNAYSRMLYGRTQTNPASRFISEI 647
Query: 936 -PHHLREVQAEQS 947
+L+ E+S
Sbjct: 648 GSQYLKSENEEKS 660
>gi|299820618|ref|ZP_07052508.1| ATP-dependent DNA helicase PcrA [Listeria grayi DSM 20601]
gi|299818113|gb|EFI85347.1| ATP-dependent DNA helicase PcrA [Listeria grayi DSM 20601]
Length = 730
Score = 235 bits (599), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 218/747 (29%), Positives = 336/747 (44%), Gaps = 144/747 (19%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q A PLLI+AG GSGK G+SP NILA+TFT
Sbjct: 9 VHGLNPEQ-RKAVETTEGPLLIMAGAGSGKTRVLTHRIAYLVREKGVSPYNILAITFTNK 67
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ R+GS++G + + ISTFHS +++ R +++ F I G Q
Sbjct: 68 AAREMKARVGSLMG-GEGESIWISTFHSMCVRILRRDIDRIGYERNFTILDSGDQ----- 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ V+K I D K KFE
Sbjct: 122 ----------LSVIKGILKD-----------------------------KNVDSKKFEPR 142
Query: 410 GMDVAKASGK----TPAEFRK--IG--DEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
G+ + ++ K T E++K +G D++ + E Y L+ ALD+ DLI +++L
Sbjct: 143 GILASISNAKNELITAGEYKKEAVGFYDKMVGDVYEAYEKKLKRNQALDFDDLIMVTIQL 202
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGA 520
PEV + YQ ++ I VDE+QDT+ QY L+++LA+ + +VGD DQSI+ + GA
Sbjct: 203 FERVPEVLEYYQRKFQYIHVDEYQDTNHAQYLLVKLLAARFKNLCVVGDSDQSIYGWRGA 262
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
DIS SF KD+ I L NYRST+ I+EAA+S+I++N R + K + T NS G KI
Sbjct: 263 DISNILSFEKDYPKAAVILLEENYRSTKRILEAANSVIENNSNR-KPKKLWTSNSEGKKI 321
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
+ E + A+++ KI E Y IAILYR +V + F + I +
Sbjct: 322 FYHKALTEKEEAAYVVSKIQELKR-------PYSDIAILYRTNAQSRVLEEYFMKSNIAY 374
Query: 641 N-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIST 699
+ G FY +K ++ I+A LR DD R+ + ++ +D ++ ++T
Sbjct: 375 TMVGGTKFYDRKEIKDILAYLRLVSNNDDDISLTRIVN---VPKRGVGAGTLDKLNNVAT 431
Query: 700 IRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANM 759
I A IS + QL + +++ + + S++ ++ +
Sbjct: 432 SYDLPLFEVLNRIEMAGISAKVSK-QLVEFYELVHGFTQMQDYL----SVTELVEEILKK 486
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
+ +LE ++ Q L ++ +FLS KE +DK
Sbjct: 487 TGYREMLENERTIE----------------AQTRLENIDEFLSVTQNFEKE----SEDKS 526
Query: 820 GCINVLKAFIDYIS--------ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAK 871
L AF+ ++ E ETE N SVTL T+H +KGLE+ +VF+
Sbjct: 527 -----LLAFLTDLALVADVDRLEDETE--------NNGSVTLMTLHSAKGLEFPVVFLVG 573
Query: 872 ANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQ 924
E P + + + +EEERRL YV +TRA ++LFI LY +N +
Sbjct: 574 MEEGIFP-----HSRAIYEESEMEEERRLAYVGITRAEEELFITSAYSRMLYGRPSSNLE 628
Query: 925 LLQPSRFLKEIPHHLREVQAEQSVQDQ 951
SRF+ EIP L E E V +
Sbjct: 629 ----SRFIGEIPADLVETGNESKVNKE 651
>gi|288554983|ref|YP_003426918.1| ATP-dependent DNA helicase [Bacillus pseudofirmus OF4]
gi|288546143|gb|ADC50026.1| ATP-dependent DNA helicase [Bacillus pseudofirmus OF4]
Length = 742
Score = 234 bits (598), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 223/757 (29%), Positives = 349/757 (46%), Gaps = 120/757 (15%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFT 287
K L LN +Q +A PLL++AG GSGK I+P N+LA+TFT
Sbjct: 8 KMLSGLNPEQRQATT-HTEGPLLLMAGAGSGKTRVLTHRIAYLLREKAIAPWNVLAITFT 66
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM+DR+ +VG A+++ ISTFHS +++ R +++ F I Q
Sbjct: 67 NKAAREMKDRVAKLVG-PVAEDIWISTFHSMCVRILRRDIDRIGYNRNFTILDSSDQLSV 125
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
I + +L+N+ I K +L T MS +K N+ +
Sbjct: 126 IKQ---ILKNKNIDPKKFDPRSILGT---------------------MSGWK----NELK 157
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ + +A+G D+ A + Y L+ +ALD+ DLI +++L PE
Sbjct: 158 KPDDCMRQATGPY--------DQTAAEVYVEYQKQLKKNHALDFDDLIMKTIELFKLVPE 209
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFD 526
V + YQ ++ I+VDE+QDT+ QY L+++L+ + I +VGD DQSI+ + GADI+
Sbjct: 210 VLEFYQRKFQYILVDEYQDTNKAQYMLVRMLSDKYENICVVGDSDQSIYRWRGADIANIL 269
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
SF +D+ N I L +NYRST+ I+ AA+ +I++N R + KN+ T+N G KI
Sbjct: 270 SFEEDYPNATVILLEQNYRSTKMILNAANKVIENNFNR-KPKNLWTENDDGPKIGYYGAD 328
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGV 645
E ++ F+++KI E +G + IAILYR +V + F + I +NI G
Sbjct: 329 TEQSEAQFVVEKIREATRSGE---HTNSDIAILYRTNAQSRVIEEYFVKSNIEYNIVGGT 385
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH--IDKISTIRKC 703
FY +K ++ ++A LR DD +R+ KR I +DKI
Sbjct: 386 KFYDRKEIKDVLAYLRLIANPDDDISLQRIINV--------PKRGIGATTVDKIG----A 433
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT-----SVAN 758
+ +F A L + +V LT + KL +S I SV
Sbjct: 434 YAVEQGLSLFAA----------LQEIEQVGLTARTVGKLKDFRDQLSHWIQMQEYLSVTE 483
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
+V + LLE+ D +L + + + Q L ++ +F++ T E+ N D+
Sbjct: 484 LVEE--LLEKTGYRD-----MLRNEQSIEA--QSRLENIDEFITV--TNEFEKSNDDKSL 532
Query: 819 KGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
+ L A + I + + E+ ++++TL T+H +KGLE+ +VF+ E P
Sbjct: 533 VAFLTDL-ALVADIDKLDDEN----EGKPKDAITLMTLHSAKGLEFPLVFLIGMEEGIFP 587
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQPSRF 931
A +EEERRL YV +TRA K+L+I LY + N PSRF
Sbjct: 588 HSRSLFEA-----EEMEEERRLAYVGITRAEKQLYITNARMRTLYGKTNTN----PPSRF 638
Query: 932 LKEIPHHLREVQAEQSVQDQHENIPEGTAQFTINLPR 968
+ EIP E E GTA P+
Sbjct: 639 ISEIPEECLEQVNEDKPTPAWMKASRGTASAPAAKPK 675
>gi|404445632|ref|ZP_11010767.1| ATP-dependent DNA helicase PcrA [Mycobacterium vaccae ATCC 25954]
gi|403651829|gb|EJZ06925.1| ATP-dependent DNA helicase PcrA [Mycobacterium vaccae ATCC 25954]
Length = 777
Score = 234 bits (598), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 214/736 (29%), Positives = 335/736 (45%), Gaps = 106/736 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L LN QQ +A + TPLLIVAG GSGK + ILA+TFT
Sbjct: 14 LDGLNPQQRQAVLHE-GTPLLIVAGAGSGKTAVLTRRIAYLLAAREVGVGQILAITFTNK 72
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EMR+R+ ++VG A+ + +STFHS +++ R+ A L S F IY RR +
Sbjct: 73 AAAEMRERVAALVGP-RARNMWVSTFHSTCVRILRNQASLLPGLNSNFSIYDADDSRRLL 131
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
+ ++ + L K+ S +L+ S+S+ K N+
Sbjct: 132 L----MIGKDMGLDTKKYSPRLLSN--------------------SISNLK----NELIG 163
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
A+AS R + D + Y LR+ NALD+ DLI +V +L FP++
Sbjct: 164 PPQAAAEASEAADDLARIVAD-----VYAEYQRRLRAANALDFDDLIGETVAVLQAFPQI 218
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQIL----ASHN--------RITIVGDDDQSIFS 516
Q Y+ ++ I+VDE+QDT+ QY L++ L AS + + +VGD DQSI++
Sbjct: 219 AQYYRRRFRHILVDEYQDTNHAQYVLVRELVGTAASDDDAAGVPPAELCVVGDADQSIYA 278
Query: 517 FNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSH 576
F GA I + F +D+ N I L +NYRST+ I+ AA+S+I NV R + K + TD
Sbjct: 279 FRGATIRNIEDFERDYPNATTILLEQNYRSTQTILNAANSVISRNVGRRE-KRLWTDAGE 337
Query: 577 GSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRER 636
G I+ NE + F+ +I A + P SY +A+ YR S + + F
Sbjct: 338 GELIVGYVADNEHDEARFVAQEIDALADSVPG--FSYNDVAVFYRTNNSSRAIEEVFIRA 395
Query: 637 KIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHID 695
IP+ + GV FY ++ +R I+A LR D RR+ ++ + D +
Sbjct: 396 GIPYKVVGGVRFYERREIRDIVAYLRVLDNPGDAVSMRRILNT-------PRRGIGDRAE 448
Query: 696 KISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITS 755
+ + + D A G + + +E++ L + +
Sbjct: 449 ACVAVYAETTGANFNDALAAAAEGKVPMLNTRSEKAIKGFVELLDDL---RGGLDGELGD 505
Query: 756 VANMVPQK--YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTD--FLSTKFTAAKEE 811
+ V + Y E A D L+ N+L SV D+ + L+ + AA +
Sbjct: 506 LVETVLDRTGYRAELEASTDPQDLARLDNLNELVSVAHEFSIDLANARALADEDAAATPD 565
Query: 812 GNVDQDKKGCINVLKAFIDYIS-----ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDI 866
+V VL AF++ +S + EH VT+ T+H +KGLE+ +
Sbjct: 566 EDVPD-----TGVLAAFLERVSLVADADDIPEH-------GSGVVTMMTLHTAKGLEFPV 613
Query: 867 VFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW--Q 924
VFV + P + T + EERRL YV +TRAR++L++ + ++W
Sbjct: 614 VFVTGWEDGMFPHMRALGDP-----TELSEERRLAYVGITRARQRLYLSRAKVRSSWGQP 668
Query: 925 LLQP-SRFLKEIPHHL 939
+L P SRFL+EIP L
Sbjct: 669 MLNPESRFLREIPQEL 684
>gi|429199742|ref|ZP_19191485.1| ATP-dependent DNA helicase PcrA [Streptomyces ipomoeae 91-03]
gi|428664546|gb|EKX63826.1| ATP-dependent DNA helicase PcrA [Streptomyces ipomoeae 91-03]
Length = 842
Score = 234 bits (598), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 215/731 (29%), Positives = 328/731 (44%), Gaps = 102/731 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LN+ Q AA TPLLIVAG GSGK + P ILA+TFT
Sbjct: 70 LEGLNENQ-RAAVVHAGTPLLIVAGAGSGKTRVLTHRIAHLLAERNVHPGQILAITFTNK 128
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A + + TFHS +++ R ++KL TS F IY +R +
Sbjct: 129 AAGEMKERVEQLVGP-RANAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMA 187
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R L+ L KR F SF + + + +
Sbjct: 188 LVCRDLD----LDPKR---------------------------FPPKSFS-AKISNLKNE 215
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+D + + F K + A Y LR NALD+ DLI +V LL FP+V
Sbjct: 216 LIDEEDFAAQASDGFEKTLAQAYAL----YQSRLREANALDFDDLIMTTVNLLRAFPDVA 271
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN----------------RITIVGDDDQS 513
+ Y+ ++ ++VDE+QDT+ QY+L++ L + + +VGD DQS
Sbjct: 272 EHYRRRFRHVLVDEYQDTNHAQYALVRELVGTSEHPVGVPPNEWDVPPAELCVVGDADQS 331
Query: 514 IFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTD 573
I++F GA I F +D+ + I L +NYRST+ I+ AA+++I+ N R + KN+ T+
Sbjct: 332 IYAFRGATIRNILQFEEDYPDATTILLEQNYRSTQTILSAANAVIERNESR-RPKNLWTN 390
Query: 574 NSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
G++I E + F+ D+I G A G +A+ YR +VF+ F
Sbjct: 391 AGAGAQITGYVADTEHDEAQFVADEIDRLTDAGEAKA---GDVAVFYRTNAQSRVFEEVF 447
Query: 634 RERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID 692
+P+ + GV FY +K VR ++A LR D P RR+ + ++ +R
Sbjct: 448 IRVGLPYKVVGGVRFYERKEVRDVLAYLRVLANPEDSVPLRRILN---VPKRGIGERAEA 504
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTL-EMISKLVRREPSISA 751
ID ++ K SF A + A G RS T K TL E + +V +A
Sbjct: 505 MIDALAQREKISFPQALKRVDEA--YGMAARS--TNAVKRFNTLMEDLRTIVESGAGPAA 560
Query: 752 VITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDF--LSTKFTAAK 809
V+ +V YL E +A D +D LQ L A +F S
Sbjct: 561 VLEAVLERT--GYLAELQASTD-------PQDETRIENLQELAAVALEFEQESGAGAGEG 611
Query: 810 EEGNVDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVF 868
+ L F++ ++ +++ D +TL T+H +KGLE+ +VF
Sbjct: 612 ADAGEGAGAGAASGGLADFLERVALVADSDQIPDDEEDGSGVITLMTLHTAKGLEFPVVF 671
Query: 869 VAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QL 925
+ + P + G E +EEERRL YV +TRAR++L++ M + W
Sbjct: 672 LTGMEDGVFPHMRAL-GQTKE----LEEERRLAYVGITRARERLYLTRSSMRSAWGQPSY 726
Query: 926 LQPSRFLKEIP 936
PSRFL+EIP
Sbjct: 727 NPPSRFLEEIP 737
>gi|260682110|ref|YP_003213395.1| ATP-dependent DNA helicase [Clostridium difficile CD196]
gi|260685708|ref|YP_003216841.1| ATP-dependent DNA helicase [Clostridium difficile R20291]
gi|296449111|ref|ZP_06890898.1| ATP-dependent DNA helicase PcrA [Clostridium difficile NAP08]
gi|296880912|ref|ZP_06904860.1| ATP-dependent DNA helicase PcrA [Clostridium difficile NAP07]
gi|423081416|ref|ZP_17070023.1| ATP-dependent DNA helicase PcrA [Clostridium difficile
002-P50-2011]
gi|423085149|ref|ZP_17073605.1| ATP-dependent DNA helicase PcrA [Clostridium difficile
050-P50-2011]
gi|423088720|ref|ZP_17077095.1| ATP-dependent DNA helicase PcrA [Clostridium difficile 70-100-2010]
gi|260208273|emb|CBA60686.1| ATP-dependent DNA helicase [Clostridium difficile CD196]
gi|260211724|emb|CBE02039.1| ATP-dependent DNA helicase [Clostridium difficile R20291]
gi|296261930|gb|EFH08738.1| ATP-dependent DNA helicase PcrA [Clostridium difficile NAP08]
gi|296428199|gb|EFH14098.1| ATP-dependent DNA helicase PcrA [Clostridium difficile NAP07]
gi|357550605|gb|EHJ32417.1| ATP-dependent DNA helicase PcrA [Clostridium difficile
050-P50-2011]
gi|357550797|gb|EHJ32605.1| ATP-dependent DNA helicase PcrA [Clostridium difficile
002-P50-2011]
gi|357559214|gb|EHJ40672.1| ATP-dependent DNA helicase PcrA [Clostridium difficile 70-100-2010]
Length = 762
Score = 234 bits (598), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 207/719 (28%), Positives = 343/719 (47%), Gaps = 96/719 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +LN Q EA P+LI+AG GSGK G+ NILA+TFT
Sbjct: 11 LDTLNPAQREA-VEKTEGPVLILAGAGSGKTKVLTTRIAYLIEDKGVQAPNILAITFTNK 69
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EMR+R+ +G T K++ ISTFHS +++ R K+ F+IY Q
Sbjct: 70 AANEMRERVEQNIGPET-KDMWISTFHSCCVRILRKDINKIGYNRSFVIYDSADQ----- 123
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAML-FFSMSSFKLCQYNKFER 408
+ +VK ++ +D +F A++ S + KL +F+
Sbjct: 124 ----------VTLVKDCLKELNLSD--------KVFEPKAVISAISGAKDKLYTPKQFK- 164
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D+ A + KI D I Y L+ +ALD+ DLI +V+L EV
Sbjct: 165 ---DINMADNR----MVKIAD-----IYALYQDRLKRNSALDFDDLILKTVELFKANDEV 212
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDS 527
Y+ ++ I+VDE+QDTS QY L+++LA H I +VGDDDQSI+ + GADI
Sbjct: 213 LAYYRSRFRYIMVDEYQDTSKAQYELIKLLAREHQNICVVGDDDQSIYGWRGADIRNILE 272
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KD+ N ++L +NYRST+ I++AA+ +I +N++R + K + ++ G I I+ +
Sbjct: 273 FEKDYDNVHVVKLEQNYRSTQVILDAANKVISNNIER-KRKKLWSEKKEGELIKIQLTGS 331
Query: 588 EDAQCAFIIDKILEHA--SNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-G 644
E + FI D I + A N P Y A+LYR + + A +IP+NI+ G
Sbjct: 332 EIEEADFIADSIAQIARKENRP-----YKDFAVLYRANAQARPVEDALNRSQIPYNIYGG 386
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCS 704
FY +K ++ ++A LR DD +R+ + + R I+ I+ + +++ S
Sbjct: 387 TKFYERKEIKDLLAYLRVIQNPQDDISIKRIIN---VPRRGIGLRTIEKIEDRANLKQES 443
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKY 764
S DI T R+ ++ ++ TL I ++ I V+ + M
Sbjct: 444 IYSVLIDIETNSDISTKARASISGFVDIIGTLRTIKEVYPVSKLIEKVLDTTGYM---DE 500
Query: 765 LLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINV 824
L+E R + D E D L+ ++ ++ +F ++ ++ ++D
Sbjct: 501 LVEIRNKNEKDLTGKGEEAQDRIDNLREFIS-----IALEFESSNDDTYENKD------- 548
Query: 825 LKAFIDYISERETEHFRTQRHDNENS--VTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
L+ F+ I+ ++ +D E++ V+L TIH SKGLE+ +VF+ E P+
Sbjct: 549 LETFLTSIA------LTSESNDEEDNDRVSLMTIHTSKGLEFPVVFLTGMEEGLFPISRA 602
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHH 938
+ + +EEERRL YV +TRA+++L++ + + SRF++E+P
Sbjct: 603 IKSMSD---SQIEEERRLCYVGITRAKEELYMSLTEKRTLYGKTNVAIASRFMEELPEE 658
>gi|335420030|ref|ZP_08551072.1| ATP-dependent DNA helicase Rep [Salinisphaera shabanensis E1L3A]
gi|334895418|gb|EGM33590.1| ATP-dependent DNA helicase Rep [Salinisphaera shabanensis E1L3A]
Length = 667
Score = 234 bits (597), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 207/726 (28%), Positives = 338/726 (46%), Gaps = 118/726 (16%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASE 293
LN +Q +AA + PLL++AG GSGK G + I A+TFT AA E
Sbjct: 6 LNPEQ-DAAVRYLDGPLLVLAGAGSGKTGVITRKIAHLIQRGYAGDRIAAVTFTNKAARE 64
Query: 294 MRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVR 353
M+ R ++ A+ LT+STFHS LQ+ R+ L F I+
Sbjct: 65 MKQRASKLIDSDAARGLTVSTFHSLGLQMIRAEHAALGYKPRFSIFDAE----------- 113
Query: 354 LLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDV 413
+ +K+L D++ D + F++S++K + +G
Sbjct: 114 --DADKLLA------DLIGKDAE----------LRKTARFTISAWKSALVDP---EGA-A 151
Query: 414 AKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQ 473
A A+G A R + Y L++ NA+D+ DL+S V+LL + +Q
Sbjct: 152 ATAAGSEQAIARAYAE---------YQRRLKAYNAVDFDDLLSLPVQLLREDAAARERWQ 202
Query: 474 DSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRKDF 532
+ ++ ++VDE+QDT+A QY L+++LA T+VGDDDQSI+++ GA +DF
Sbjct: 203 NRFRYLLVDEYQDTNAAQYELMRLLAGVRAAFTVVGDDDQSIYAWRGARPGNIADLSRDF 262
Query: 533 LNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQC 592
+ K I+L +NYRS ++ AA++LI N R KN+ + G +I + C +E +
Sbjct: 263 PHLKVIKLEQNYRSVGNVLSAANTLISSNA-RVYEKNLWSAMGPGDRIRVLACADEAGEA 321
Query: 593 AFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGV-AFYRKK 651
+ +I H + ++G A+LYR + F+ A RER+IP+ + G +F+ +
Sbjct: 322 DRVASEISSHRLR---TGNAFGDYAVLYRGNFQSRAFEKAMRERQIPYRVSGGRSFFERS 378
Query: 652 VVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACD 711
+R + A L+ + DD + RV L +E ++ + + + R S AA
Sbjct: 379 EIRDLAAYLKLLVNPDDDAAFLRVVN---LPRREIGPATLEALARYAGSRHLSLFDAARG 435
Query: 712 IFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAV 771
+ A G R+ GR++ ++ L R S P K L+ Q +
Sbjct: 436 VGLA--GGVGDRA----GRRLAEFVDWAKGLARDGES-----------TPAKALVVQ-LI 477
Query: 772 VDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLK--AFI 829
D D + L + + L +V +FL+ + EE N D +G V++ + +
Sbjct: 478 ADIDYREWLRDTAANTRAARKRLENVDEFLA--WLGHMEE-NTDGTPRGLDEVVRRLSLM 534
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
D+ ++ E D EN V L T+H +KGLE+D VF+ E +P + +++
Sbjct: 535 DFANQSEK--------DIENQVHLLTLHAAKGLEFDHVFLVGMEEGLLP----HHACMDD 582
Query: 890 KGTSVEEERRLLYVAMTRARKKLFILYVMM--------DANWQLLQPSRFLKEIPHHLRE 941
+ +EEERRLLYV +TRARK L + Y D+ PSRFL+E+P E
Sbjct: 583 E--KIEEERRLLYVGITRARKTLSLSYARQRRRGGENTDST-----PSRFLEELPKD--E 633
Query: 942 VQAEQS 947
++ QS
Sbjct: 634 IEWPQS 639
>gi|126697900|ref|YP_001086797.1| DNA helicase, UvrD/REP type [Clostridium difficile 630]
gi|254973999|ref|ZP_05270471.1| ATP-dependent DNA helicase [Clostridium difficile QCD-66c26]
gi|255099501|ref|ZP_05328478.1| ATP-dependent DNA helicase [Clostridium difficile QCD-63q42]
gi|255305356|ref|ZP_05349528.1| ATP-dependent DNA helicase [Clostridium difficile ATCC 43255]
gi|255313045|ref|ZP_05354628.1| ATP-dependent DNA helicase [Clostridium difficile QCD-76w55]
gi|255515802|ref|ZP_05383478.1| ATP-dependent DNA helicase [Clostridium difficile QCD-97b34]
gi|255654387|ref|ZP_05399796.1| ATP-dependent DNA helicase [Clostridium difficile QCD-23m63]
gi|306519010|ref|ZP_07405357.1| ATP-dependent DNA helicase [Clostridium difficile QCD-32g58]
gi|384359667|ref|YP_006197519.1| ATP-dependent DNA helicase [Clostridium difficile BI1]
gi|115249337|emb|CAJ67150.1| DNA helicase, UvrD/REP type [Clostridium difficile 630]
Length = 754
Score = 234 bits (597), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 207/719 (28%), Positives = 343/719 (47%), Gaps = 96/719 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +LN Q EA P+LI+AG GSGK G+ NILA+TFT
Sbjct: 3 LDTLNPAQREA-VEKTEGPVLILAGAGSGKTKVLTTRIAYLIEDKGVQAPNILAITFTNK 61
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EMR+R+ +G T K++ ISTFHS +++ R K+ F+IY Q
Sbjct: 62 AANEMRERVEQNIGPET-KDMWISTFHSCCVRILRKDINKIGYNRSFVIYDSADQ----- 115
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAML-FFSMSSFKLCQYNKFER 408
+ +VK ++ +D +F A++ S + KL +F+
Sbjct: 116 ----------VTLVKDCLKELNLSD--------KVFEPKAVISAISGAKDKLYTPKQFK- 156
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D+ A + KI D I Y L+ +ALD+ DLI +V+L EV
Sbjct: 157 ---DINMADNR----MVKIAD-----IYALYQDRLKRNSALDFDDLILKTVELFKANDEV 204
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDS 527
Y+ ++ I+VDE+QDTS QY L+++LA H I +VGDDDQSI+ + GADI
Sbjct: 205 LAYYRSRFRYIMVDEYQDTSKAQYELIKLLAREHQNICVVGDDDQSIYGWRGADIRNILE 264
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KD+ N ++L +NYRST+ I++AA+ +I +N++R + K + ++ G I I+ +
Sbjct: 265 FEKDYDNVHVVKLEQNYRSTQVILDAANKVISNNIER-KRKKLWSEKKEGELIKIQLTGS 323
Query: 588 EDAQCAFIIDKILEHA--SNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-G 644
E + FI D I + A N P Y A+LYR + + A +IP+NI+ G
Sbjct: 324 EIEEADFIADSIAQIARKENRP-----YKDFAVLYRANAQARPVEDALNRSQIPYNIYGG 378
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCS 704
FY +K ++ ++A LR DD +R+ + + R I+ I+ + +++ S
Sbjct: 379 TKFYERKEIKDLLAYLRVIQNPQDDISIKRIIN---VPRRGIGLRTIEKIEDRANLKQES 435
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKY 764
S DI T R+ ++ ++ TL I ++ I V+ + M
Sbjct: 436 IYSVLIDIETNSDISTKARASISGFVDIIGTLRTIKEVYPVSKLIEKVLDTTGYM---DE 492
Query: 765 LLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINV 824
L+E R + D E D L+ ++ ++ +F ++ ++ ++D
Sbjct: 493 LVEIRNKNEKDLTGKGEEAQDRIDNLREFIS-----IALEFESSNDDTYENKD------- 540
Query: 825 LKAFIDYISERETEHFRTQRHDNENS--VTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
L+ F+ I+ ++ +D E++ V+L TIH SKGLE+ +VF+ E P+
Sbjct: 541 LETFLTSIA------LTSESNDEEDNDRVSLMTIHTSKGLEFPVVFLTGMEEGLFPISRA 594
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHH 938
+ + +EEERRL YV +TRA+++L++ + + SRF++E+P
Sbjct: 595 IKSMSD---SQIEEERRLCYVGITRAKEELYMSLTEKRTLYGKTNVAIASRFMEELPEE 650
>gi|227548288|ref|ZP_03978337.1| ATP-dependent DNA helicase [Corynebacterium lipophiloflavum DSM
44291]
gi|227079606|gb|EEI17569.1| ATP-dependent DNA helicase [Corynebacterium lipophiloflavum DSM
44291]
Length = 764
Score = 234 bits (596), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 209/748 (27%), Positives = 337/748 (45%), Gaps = 97/748 (12%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAA 291
LN QQ EAA PLLIVAG GSGK ++P ILA+TFT AA
Sbjct: 8 GLNPQQ-EAAVKHSGGPLLIVAGAGSGKTAVLTRRIAYLLQERAVAPWQILAITFTNKAA 66
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAIIE 350
+EM++R+ ++VG A+ + ++TFHS +++ R A+ + + F IY RR +
Sbjct: 67 AEMKERVANLVGP-EAQRMWVATFHSVCVRILRQQAQLVAGLNTNFSIYDSDDSRRLL-- 123
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
++ + L +K+ S L ++S+ K E
Sbjct: 124 --SMIAKDHNLDLKKFSARTLAN--------------------AISNHKNELVGPAE--- 158
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
+G+ R D A + +Y LR NALD+ DLI V++ P V +
Sbjct: 159 ------AGERAERTRNPFDLTVARVYADYQRRLRQANALDFDDLIGEVVRIFKEHPHVTE 212
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILASHN----RITIVGDDDQSIFSFNGADISGFD 526
Y+ ++ ++VDE+QDT+ QY L+ L + +VGD DQSI++F GA I +
Sbjct: 213 YYRRRFRHVLVDEYQDTNHAQYELIHTLVGSGPDVPELAVVGDSDQSIYAFRGATIRNIE 272
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
F +D+ + + L +NYRST+ I+ AA+++I N R + KN+ T + G KI
Sbjct: 273 EFERDYPDASTVMLEQNYRSTQNILGAANAVIAQNQGR-RPKNLWTSHGAGEKITGYVAD 331
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
NE + FI +I A G Y IA++YR + + + F IP+ + G
Sbjct: 332 NEHDEARFIASEIDRLADQG----SRYSDIAVMYRTNNASRALEDIFIRSGIPYKVVGGT 387
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRK--- 702
FY ++ +R I+A ++ D RR+ K+ + D + +
Sbjct: 388 RFYERREIRDIVAYMKVLDNPDDTVSLRRIVNV-------PKRAIGDKAQAMVALHAQNN 440
Query: 703 -CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKL------VRREPSISAVITS 755
SF A D + RS+ V L E+ + + V P + ++T
Sbjct: 441 GISFGQALVDASAGDVGMLAARSKNAIAGFVSLLDELRTDMADMTNEVTGMPDLGMLVTR 500
Query: 756 VANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVD 815
+ + Y E A D G L+ N+L SV + ++ + ++ + + E +V
Sbjct: 501 I--LEATGYRAELEASNDPQDGARLDNLNELVSVAREFSSEAANQVA--YISQDELDSVV 556
Query: 816 QDKKGCINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIHQSKGLEWDIVFVAKANE 874
++ + L+AF++ +S Q D++ VTL T+H +KGLE+ VFV +
Sbjct: 557 EEGEPMPGSLQAFLERVSLVADAD---QLPDSDQGVVTLMTLHTAKGLEFPYVFVTGWED 613
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW--QLLQP-SRF 931
+ P V + EERRL YV +TRAR KL++ ++ ++W + P SRF
Sbjct: 614 GQFPHVRALGDP-----EELAEERRLAYVGITRARTKLYLTRAVLRSSWGSPVTNPASRF 668
Query: 932 LKEIPHHL---REVQAEQSVQDQHENIP 956
L EIP L R V+ E+SV P
Sbjct: 669 LAEIPDDLIDWRRVELERSVTSDAWGTP 696
>gi|154483242|ref|ZP_02025690.1| hypothetical protein EUBVEN_00943 [Eubacterium ventriosum ATCC
27560]
gi|149736050|gb|EDM51936.1| putative ATP-dependent DNA helicase PcrA [Eubacterium ventriosum
ATCC 27560]
Length = 780
Score = 234 bits (596), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 221/725 (30%), Positives = 349/725 (48%), Gaps = 122/725 (16%)
Query: 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAA 290
++LND Q + A PLLI+AG GSGK + P NI+A+TFT A
Sbjct: 9 ETLNDMQ-QLAVYHTEGPLLILAGAGSGKTRVLTHRIAYLIEEKHVQPYNIMAITFTNKA 67
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIE 350
A EMR+R+ IVG A+++ +STFHS +++ R + +++ +++F IY Q++
Sbjct: 68 AGEMRERVNKIVGFG-AEQVWVSTFHSACVRILRRYIDRIGYSNDFTIYDTEDQKK---- 122
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
LL++ V+K ++ D ++ NA+L +S FK NK G
Sbjct: 123 ---LLKD----VIKNLNLD------------PKMYKENAVLG-KISDFK----NKLVTTG 158
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
+VA+ + ++F+ + + I NY L+ NALD+ DLI +V L PEV +
Sbjct: 159 -EVAQMA---QSDFKLLN---LSKIYNNYQEALKKNNALDFDDLIMKTVHLFRKCPEVLE 211
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFR 529
YQ+ K I+VDE+QDT+ Q++ +++LAS + + +VGDDDQSI+ F GADIS F
Sbjct: 212 SYQERLKYIMVDEYQDTNGAQFAFIKLLASKYQNLCVVGDDDQSIYKFRGADISNILQFE 271
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
K+F N + ++L +NYRST+ I++AA+ +I HN K + K + +DN G KI + + +
Sbjct: 272 KNFNNARVVKLEQNYRSTKTILDAANEVI-HNNKGRKDKTLWSDNEQGEKIDLYQAEDAY 330
Query: 590 AQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFY 648
A+ + I E+ G A Y AILYR + + R IP+ I G FY
Sbjct: 331 AEADMVASTIKENVDFGRADYSDY---AILYRTNAQSRALEEKLLLRNIPYKIIGGQNFY 387
Query: 649 RKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISA 708
++K ++ ++A LR DD R+ KR I + ++
Sbjct: 388 QRKEIKDVLAYLRIICNATDDIAVERIINV--------PKRGIG----------ATTVTK 429
Query: 709 ACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQ 768
A D F R+ + LL +E I L R + + N Q+ +
Sbjct: 430 AKD---------FARAYGFNLYESLLEVENIPGLERAATKVRKFTDLIENFKDQQQSMSL 480
Query: 769 RAVVDFDGGKLLNEDNDLRSVLQYLLADVT----------DFLSTKFTAAKEEGNVDQDK 818
+ +V+ ++LNE + L A+ T D L TK T +E N D
Sbjct: 481 KELVN----EVLNE----TGYVAELAAENTDEANGRIENIDELITKVTEYEE--NTDNPS 530
Query: 819 KGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
L F++ ++ E ++ ++ + V L T+H +KGLE+ VF+ +
Sbjct: 531 ------LAEFLEEVALVSEIDNL----DEDSSYVVLMTVHSAKGLEFPNVFLCGMEDGLF 580
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKE 934
P + +++ +EEERRL YVA+TRA K L I Y M+ Q SRF+KE
Sbjct: 581 P---GYMSIMSDDPEELEEERRLCYVAITRAMKHLTISYAKRRMVRGETQYNIISRFVKE 637
Query: 935 IPHHL 939
IP L
Sbjct: 638 IPMSL 642
>gi|218130915|ref|ZP_03459719.1| hypothetical protein BACEGG_02510 [Bacteroides eggerthii DSM 20697]
gi|217987259|gb|EEC53590.1| UvrD/REP helicase [Bacteroides eggerthii DSM 20697]
Length = 760
Score = 234 bits (596), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 216/728 (29%), Positives = 337/728 (46%), Gaps = 117/728 (16%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFT 287
S Y+Q LN+ Q AA P L++AG GSGK P NILA+TFT
Sbjct: 2 SDYIQELNEGQ-RAAVLYNDGPSLVIAGAGSGKTRVLTYKIAYLLENDYQPWNILALTFT 60
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQR-- 345
AA EM++RI VG A+ L + TFHS L++ + A ++ TS F IY +
Sbjct: 61 NKAAREMKERIARQVGVERARHLWMGTFHSIFLRILHAEAAQIGFTSRFTIYDTADSKSL 120
Query: 346 -RAIIEAVRLLENEKILVVKRISTDMLTTDGHF----GYMRASLFMMNAMLFFSMSSFKL 400
R+II+ + L +EK+ + + H GY
Sbjct: 121 LRSIIKEMGL--DEKVYKPGTVQARISNAKNHLVSPAGYAN------------------- 159
Query: 401 CQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVK 460
NK +G + K PA I D I Y R +A+D+ DL+ +
Sbjct: 160 ---NKEAYEG----DCAAKMPA----IRD-----IYRRYWERCRQADAMDFDDLLFYTFL 203
Query: 461 LLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSL-LQILASHNRITIVGDDDQSIFSFNG 519
L P+V YQ ++ I+VDE+QDT+ Q+S+ LQ+ H + +VGDD QSI+SF G
Sbjct: 204 LFRDHPDVLARYQSQFRYILVDEYQDTNFAQHSIVLQLAKEHRHVCVVGDDAQSIYSFRG 263
Query: 520 ADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSK 579
ADI F K + K +L +NYRST+ IV AA+SLI+ N ++ + K V ++ G
Sbjct: 264 ADIDNILYFTKVYPGTKVFKLEQNYRSTQTIVSAANSLIEKNQRQIR-KEVFSEKEKGEA 322
Query: 580 IIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIP 639
I + + +++ + +I+KI E G +Y AILYR +VF+ A R+R +P
Sbjct: 323 IGVYQAYSDVEEGDIVINKIAELRRQGN---YAYSDFAILYRTNAQSRVFEEAMRKRSMP 379
Query: 640 FNIHG-VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIS 698
+ I+G ++FY++K ++ IA R T+ D+ E KR+I++ +
Sbjct: 380 YRIYGGLSFYQRKEIKDTIAYFRLTVNPNDE---------------EAFKRIINYPARGI 424
Query: 699 TIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
S I+AA + T LT G V + ++KL S ++T
Sbjct: 425 GDTTVSKITAAATDHNVSL-WTVLCEPLTYG--VNINKGTVTKL----QSFRDLMTGFIE 477
Query: 759 MVPQKYLLEQRAVVDFDGGKLLN--EDNDLRSV-----LQYLLADVTDFLSTKFTAAKEE 811
V +K E + G + + +DN ++ ++ L ++DF + + +EE
Sbjct: 478 SVSEKNAYELGTEIIRQSGIIGDVCQDNSPENLSRKENIEELANGMSDFCAQR----QEE 533
Query: 812 GNVDQDKKGCINVLKAFIDYISERET-EHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVA 870
GN + D++SE + + ++ +TL T+H +KGLE+ VFV
Sbjct: 534 GNNN----------ITLGDFLSEVSLLTDQDSDKDGDDEKITLMTVHSAKGLEFRNVFVV 583
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ--- 927
E P +G V + ++EEERRL YVA+TRA F+ Y + ++
Sbjct: 584 GMEENLFP-----SGMVGDSPRALEEERRLFYVAITRAEDHCFLTYAKSRYRYGKMEFGS 638
Query: 928 PSRFLKEI 935
PSRFLK+I
Sbjct: 639 PSRFLKDI 646
>gi|218708138|ref|YP_002415759.1| ATP-dependent DNA helicase rep [Vibrio splendidus LGP32]
gi|218321157|emb|CAV17107.1| ATP-dependent DNA helicase rep [Vibrio splendidus LGP32]
Length = 672
Score = 234 bits (596), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 207/736 (28%), Positives = 351/736 (47%), Gaps = 97/736 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQECGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G +GK +K L +STFH+ L + R + L + F ++
Sbjct: 62 EMKERVGQTLGKGESKGLIVSTFHTMGLTIIRREYKALGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ + DG +RA L ++S++K N
Sbjct: 110 ---DQDQLALLKELTERQI--DGDKDLLRA--------LMSTISNWK----NDMLTPDQA 152
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
A+A G+ F A E Y +++ NALD+ DLI+ V LL T EV + +
Sbjct: 153 KARAQGEQEQLF--------AFCFEMYQKQMKAYNALDFDDLIAMPVLLLKTNQEVRERW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q + ++VDE+QDT+ QY L+++L R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QSRIRYLLVDEYQDTNTSQYELVRLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
+ N + I+L +NYRST I+ AA+ LI +N + K++ ++ G K+ + NE+ +
Sbjct: 265 YPNLRLIKLEQNYRSTSRILRAANILIANNPHVYE-KSLFSEIPDGEKLKVLNAKNEEHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
I +I+ H + Y A+LYR ++ + A + ++P+ I G +F+ +
Sbjct: 324 AERITGEIIAHKF---LNRTEYKDYAVLYRGNHQSRLIEKALMQNRVPYKISGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ +E ++ + + +R S A+
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PRREIGPVTLEKLGSYANMRGKSLFEAS- 436
Query: 711 DIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRA 770
F + T L R+ + IS R ++ AV + V ++ + +L E A
Sbjct: 437 --FEMGLEQTLTGRGLENLRRFSDWIVRISDNAERGNTVEAVRSLVRDINYEDWLYETSA 494
Query: 771 VVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAFI 829
+ + +V+D S + A EG N D+++K L+ +
Sbjct: 495 SP---------------KAAEMRMKNVSDLYS--WIVADLEGDNYDKEEK----TLREVV 533
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
++ R+ R + D+ + V L T+H SKGLE+ VF+ A E +P H+ +V+E
Sbjct: 534 QRLTLRDMME-RGEDDDDADQVQLMTLHASKGLEFPYVFLMGAEEGILP--HQ--TSVDE 588
Query: 890 KGTSVEEERRLLYVAMTRARKKLFILYVMMDANW-QLLQP--SRFLKEIPHHLREVQAEQ 946
+VEEERRL+YV +TRA+K+L + +L++P SRFL E+PH E ++ +
Sbjct: 589 --GNVEEERRLMYVGITRAQKELTFTKCRERRQYGELIKPTQSRFLDELPHEDVEWESVK 646
Query: 947 SVQDQHENIPEGTAQF 962
Q E + +G A
Sbjct: 647 KPQSAEERMEKGQAHI 662
>gi|373463251|ref|ZP_09554878.1| ATP-dependent DNA helicase PcrA [Lactobacillus kisonensis F0435]
gi|371764939|gb|EHO53304.1| ATP-dependent DNA helicase PcrA [Lactobacillus kisonensis F0435]
Length = 747
Score = 233 bits (595), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 207/721 (28%), Positives = 330/721 (45%), Gaps = 110/721 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LN Q +A P+LI+AG GSGK + P +ILA+TFT
Sbjct: 11 LKGLNKDQKDAVV-HTEGPVLIMAGAGSGKTRVLTHRIAYIIEHDNVMPWHILAITFTNK 69
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+ ++ + + ++ +STFH+ +++ R + + L F I +QR
Sbjct: 70 AAKEMRERVSKLLDE-SGNDVWVSTFHALCVRILRRNIDLLGYNRAFTIADTSEQR---- 124
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+VKR+ D+ F RA L
Sbjct: 125 -----------TLVKRVLRDLNIDPKKFD-PRAIL------------------------S 148
Query: 410 GMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+ AK TP +++ D+I A + E Y L+ +LD+ DLI +++L
Sbjct: 149 AISNAKNDLLTPKDYKAQAVSAFDQIVADVYERYQAELKQNESLDFDDLIMITIQLFEQH 208
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISG 524
+V + YQD + I VDE+QDT+ QY L+ LA+ N+ I +VGD DQSI+ + GA++
Sbjct: 209 QDVLEYYQDKFHYIHVDEYQDTNEAQYKLVNTLANKNQNICVVGDADQSIYGWRGANMQN 268
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
F+KD+ N L +NYRST+ ++EAA+S+I HN R KN+ T+N G +I
Sbjct: 269 ILDFKKDYPNAHVTLLEQNYRSTKTVLEAANSVIAHNDNRAD-KNLWTENDQGDQISYYR 327
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-H 643
E+ + +++ KI E S +YGS AILYR +V + + IP+ I
Sbjct: 328 GQTENDEARYVVAKIQEEMKK---SKRNYGSFAILYRTNAQSRVIEETLLKSNIPYTIVG 384
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
G FY +K +R I+A L D + RV E KR I ++I K
Sbjct: 385 GHKFYDRKEIRDILAYLTLLGNPNDSMSFERVIN--------EPKRGIGQ----TSIEKL 432
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
+ S L + + L E+ S+ S +I+ V+N +
Sbjct: 433 RL-----------FANDHGWSLLDAAKNIDLANEISSRAKNSIASFEQMISRVSNKMASM 481
Query: 764 YLLE-QRAVVDFDG-GKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
+ + A++D G L L + Q L ++ +F+S T +EGN + +
Sbjct: 482 SITDLTEALLDESGYASTLKASKSLEA--QTRLENLEEFISV--TQKYDEGNAEATGQDN 537
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
+ ++++S+ + D+ + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 538 L------VNFLSDLALVSDQDDLQDDNSQVTLMTLHAAKGLEFPVVFLMGMEEGLFPLSR 591
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHH 938
A +E + ++EERRL YV +TRA++KL+I M+ Q SRF+ EI
Sbjct: 592 ---AADDE--SELQEERRLAYVGITRAKEKLYITNAYSRMLYGRRQNNPESRFVNEIKPE 646
Query: 939 L 939
L
Sbjct: 647 L 647
>gi|456389365|gb|EMF54805.1| ATP-dependent DNA helicase II [Streptomyces bottropensis ATCC
25435]
Length = 838
Score = 233 bits (595), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 214/729 (29%), Positives = 326/729 (44%), Gaps = 102/729 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L LN+ Q AA +PLLIVAG GSGK + P ILA+TFT
Sbjct: 70 LDGLNENQ-RAAVVHAGSPLLIVAGAGSGKTRVLTHRIAHLLGERRVHPGQILAITFTNK 128
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A + + TFHS +++ R ++KL TS F IY +R +
Sbjct: 129 AAGEMKERVEQLVGP-RANAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMA 187
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R L+ L KR F SF + + + +
Sbjct: 188 LVCRDLD----LDPKR---------------------------FPPKSFS-AKISNLKNE 215
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+D + + F K + A Y LR NALD+ DLI +V LL FP+V
Sbjct: 216 LIDEEDFAAQATDGFEKTLAQAYAL----YQSRLREANALDFDDLIMTTVNLLRAFPDVA 271
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN----------------RITIVGDDDQS 513
+ Y+ ++ ++VDE+QDT+ QY+L++ L + + +VGD DQS
Sbjct: 272 EHYRRRFRHVLVDEYQDTNHAQYALVRELVGTSEHPVDVPPNEWDVPPAELCVVGDADQS 331
Query: 514 IFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTD 573
I++F GA I F +D+ + I L +NYRST+ I+ AA+++I+ N R + KN+ T+
Sbjct: 332 IYAFRGATIRNILQFEEDYPDATTILLEQNYRSTQTILSAANAVIERNESR-RPKNLWTN 390
Query: 574 NSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
G++I E + F+ D+I G A G +A+ YR +VF+ F
Sbjct: 391 AGAGAQITGYVADTEHDEAQFVADEIDRLTDAGDAKA---GDVAVFYRTNAQSRVFEEVF 447
Query: 634 RERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID 692
+P+ + GV FY +K VR ++A LR D P RR+ + ++ R
Sbjct: 448 IRVGLPYKVVGGVRFYERKEVRDVLAYLRVLANPEDSVPLRRILN---VPKRGIGDRAEA 504
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTL-EMISKLVRREPSISA 751
ID +S K SF A + A G RS T K TL E + +V +
Sbjct: 505 MIDALSQREKISFPQALKRVDEAY--GMAARS--TNAVKRFNTLMEDLRTVVESGAGPAT 560
Query: 752 VITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEE 811
++ +V YL E +A D +D LQ L A +F A E
Sbjct: 561 ILEAVLERT--GYLAELQASTD-------PQDETRIENLQELAAVALEFEQEATAAEGEG 611
Query: 812 GNVDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVA 870
L AF++ ++ +++ D +TL T+H +KGLE+ +VF+
Sbjct: 612 EGEAAAATPV--GLPAFLERVALVADSDQIPDDEEDGSGVITLMTLHTAKGLEFPVVFLT 669
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQ 927
+ P + G E +EEERRL YV +TRAR++L++ + + W
Sbjct: 670 GMEDGVFPHMRAL-GQTKE----LEEERRLAYVGITRARERLYLTRSTLRSAWGQPSYNP 724
Query: 928 PSRFLKEIP 936
PSRFL+EIP
Sbjct: 725 PSRFLEEIP 733
>gi|340353625|ref|ZP_08676436.1| ATP-dependent DNA helicase PcrA [Prevotella pallens ATCC 700821]
gi|339609047|gb|EGQ13924.1| ATP-dependent DNA helicase PcrA [Prevotella pallens ATCC 700821]
Length = 826
Score = 233 bits (595), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 209/725 (28%), Positives = 340/725 (46%), Gaps = 117/725 (16%)
Query: 245 LQSLNDQQLEAA--CGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTT 288
L LN+ Q EA C P L+VAG GSGK G+ P ILA+TFT
Sbjct: 13 LAQLNENQREAVEYC---KGPSLVVAGAGSGKTRVLTYKIAYLIMYGVLPYRILALTFTN 69
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQR--- 345
AA EM++RI +V + A +L + TFHS ++ R+ A+ + S F IY R
Sbjct: 70 KAAREMKERIAKLVNQEQASQLYMGTFHSVFSRILRAEAQHIGYNSNFTIYDETDSRSLL 129
Query: 346 RAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNK 405
++II+ + L N+K D + H SM+ +L +
Sbjct: 130 KSIIKTLGL--NDK---------DYKPSTVHN--------------IISMAKNQLIGPDA 164
Query: 406 FERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
F G SG A+ + + I Y R NA+D+ D++ + +LL+
Sbjct: 165 F---GSSYGGQSGLRGAKLQAV-----TRIYTVYQARCRQANAMDFDDILVNTFRLLNEN 216
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISG 524
++ +Y D ++ I+VDE+QDT+++Q +++++L H R+ +VGDD QSI+SF GA+I
Sbjct: 217 ADIRNKYADRFQYILVDEYQDTNSVQVAIVKLLTVKHQRVCVVGDDYQSIYSFRGANIDN 276
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
++K F N + +L RNYRST+ IVEAA+SL++HNVK+ K V + S GSKI
Sbjct: 277 ILDYQKKFDNVQVFKLERNYRSTQKIVEAANSLMKHNVKQIP-KEVYSKESEGSKISYHS 335
Query: 585 CHNEDAQCAFIIDKILE-HASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH 643
C+++ + ++ +I + H++ Y AILYR + F+ R+ IP+ I
Sbjct: 336 CYSDKEEAMVVVKEIKKLHSTKA----FQYNCFAILYRTNAQSRSFEDELRKASIPYKIF 391
Query: 644 G-VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDK------ 696
G ++FY++K ++ IIA R D+ E KR+I++ +
Sbjct: 392 GGLSFYQRKEIKDIIAYFRLVANPNDE---------------EAFKRIINYPTRGIGGTT 436
Query: 697 ISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLT--LEMISKLVRREPSISAVIT 754
+ I +C+ A ++ + + +G LT +E+IS +R+ +T
Sbjct: 437 LQKIIECANAKGAS-LWDVITNPPTYNLDVNKGTTTKLTAFVELISNFIRQ-----LAMT 490
Query: 755 SVANMVPQKYLLEQRAV-VDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
++ + +++Q + D G +D R L+ LLA + F+ + +E+
Sbjct: 491 DAYSLGTE--IIKQSGIWADLAQGTS-PDDIARRENLEELLAGMQAFVDERREEGREDET 547
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
D++ E + D V+L TIH +KGLE+ +VFV
Sbjct: 548 F-------------LTDFLQEVALYSDLDKADDGSPKVSLMTIHAAKGLEFPVVFVVGLE 594
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSR 930
E P N +EEERRLLYVA+TRA + ++ ++ +Q PSR
Sbjct: 595 ENIFP-----NAIAASSRKELEEERRLLYVAITRAEQLCYLTNAKNRYHFGSIQFNNPSR 649
Query: 931 FLKEI 935
FLK+I
Sbjct: 650 FLKDI 654
>gi|317476225|ref|ZP_07935476.1| UvrD/REP helicase [Bacteroides eggerthii 1_2_48FAA]
gi|316907636|gb|EFV29339.1| UvrD/REP helicase [Bacteroides eggerthii 1_2_48FAA]
Length = 760
Score = 233 bits (595), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 216/728 (29%), Positives = 337/728 (46%), Gaps = 117/728 (16%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFT 287
S Y+Q LN+ Q AA P L++AG GSGK P NILA+TFT
Sbjct: 2 SDYIQELNEGQ-RAAVLYNDGPSLVIAGAGSGKTRVLTYKIAYLLENDYQPWNILALTFT 60
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQR-- 345
AA EM++RI VG A+ L + TFHS L++ + A ++ TS F IY +
Sbjct: 61 NKAAREMKERIARQVGVERARHLWMGTFHSIFLRILHAEAVQIGFTSRFTIYDTADSKSL 120
Query: 346 -RAIIEAVRLLENEKILVVKRISTDMLTTDGHF----GYMRASLFMMNAMLFFSMSSFKL 400
R+II+ + L +EK+ + + H GY
Sbjct: 121 LRSIIKEMGL--DEKVYKPGTVQARISNAKNHLVSPAGYAN------------------- 159
Query: 401 CQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVK 460
NK +G + K PA I D I Y R +A+D+ DL+ +
Sbjct: 160 ---NKEAYEG----DCAAKMPA----IRD-----IYRRYWERCRQADAMDFDDLLFYTFL 203
Query: 461 LLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSL-LQILASHNRITIVGDDDQSIFSFNG 519
L P+V YQ ++ I+VDE+QDT+ Q+S+ LQ+ H + +VGDD QSI+SF G
Sbjct: 204 LFRDHPDVLARYQSQFRYILVDEYQDTNFAQHSIVLQLAKEHRHVCVVGDDAQSIYSFRG 263
Query: 520 ADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSK 579
ADI F K + K +L +NYRST+ IV AA+SLI+ N ++ + K V ++ G
Sbjct: 264 ADIDNILYFTKVYPGTKVFKLEQNYRSTQTIVSAANSLIEKNQRQIR-KEVFSEKEKGEA 322
Query: 580 IIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIP 639
I + + +++ + +I+KI E G +Y AILYR +VF+ A R+R +P
Sbjct: 323 IGVYQAYSDVEEGDIVINKIAELRRQGN---YAYSDFAILYRTNAQSRVFEEAMRKRSMP 379
Query: 640 FNIHG-VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIS 698
+ I+G ++FY++K ++ IA R T+ D+ E KR+I++ +
Sbjct: 380 YRIYGGLSFYQRKEIKDTIAYFRLTVNPNDE---------------EAFKRIINYPARGI 424
Query: 699 TIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
S I+AA + T LT G V + ++KL S ++T
Sbjct: 425 GDTTVSKITAAATDHNVSL-WTVLCEPLTYG--VNINKGTVTKL----QSFRDLMTGFIE 477
Query: 759 MVPQKYLLEQRAVVDFDGGKLLN--EDNDLRSV-----LQYLLADVTDFLSTKFTAAKEE 811
V +K E + G + + +DN ++ ++ L ++DF + + +EE
Sbjct: 478 SVSEKNAYELGTEIIRQSGIIGDVCQDNSPENLSRKENIEELANGMSDFCAQR----QEE 533
Query: 812 GNVDQDKKGCINVLKAFIDYISERET-EHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVA 870
GN + D++SE + + ++ +TL T+H +KGLE+ VFV
Sbjct: 534 GNNN----------ITLGDFLSEVSLLTDQDSDKDGDDEKITLMTVHSAKGLEFRNVFVV 583
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ--- 927
E P +G V + ++EEERRL YVA+TRA F+ Y + ++
Sbjct: 584 GMEENLFP-----SGMVGDSPRALEEERRLFYVAITRAEDHCFLTYAKSRYRYGKMEFGS 638
Query: 928 PSRFLKEI 935
PSRFLK+I
Sbjct: 639 PSRFLKDI 646
>gi|93569010|gb|ABF13475.1| helicase [Trueperella pyogenes]
Length = 868
Score = 233 bits (595), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 207/724 (28%), Positives = 330/724 (45%), Gaps = 108/724 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LN +Q A LL+VAG GSGK + PS ILA+TFT
Sbjct: 65 LEGLNAEQRRAVI-HSGGHLLVVAGAGSGKTRVLTTRIYHLISSGSVRPSEILAITFTNK 123
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+ S++G TA+ + ISTFHS +++ R+ E L S F IY R +
Sbjct: 124 AAKEMRERLESMIGP-TAQRMWISTFHSACVRILRAEHEALGMRSTFTIYDSADSNRLMT 182
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++ E+ + +K+ L +R + N M+ + S+F++ N ER
Sbjct: 183 ----MVAREENIDIKQFPVKKL--------LRRVSDLKNDMV--TASAFEMRNLNPEER- 227
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGI---LRSCNALDYHDLISCSVKLLSTFP 466
I + Y+G L++ NA+D+ DLI +V LL P
Sbjct: 228 ------------------------VIAQAYSGYQRRLKAANAVDFDDLIMLTVNLLKDNP 263
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS------HNRITIVGDDDQSIFSFNGA 520
+ + Y+ ++ I+VDE+QDT+ QY L+++L H +T+VGD DQSI++F GA
Sbjct: 264 LIAEHYRRRFRHILVDEYQDTNVAQYELIRVLVGGESDEPHGELTVVGDADQSIYAFRGA 323
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
I F +DF N I L +NYRST+ I+ AA+++I +N+ R + K + TD+ G KI
Sbjct: 324 TIRNIQDFEQDFPNATSILLEQNYRSTQNILSAANAVIANNLGR-RPKRLWTDSGSGEKI 382
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
+ E + +F++++I + G +YG +A+ YR + + F IP+
Sbjct: 383 VGYVADAESDEASFVVEEIDQLRDKG----FAYGQVAVFYRTNAQSRALEEMFVRSGIPY 438
Query: 641 N-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVF-KAFLLLEKEEKKRVIDHIDKIS 698
+ G FY +K ++ IA L+ D RR+ + L + ++ V H +
Sbjct: 439 KVVGGTKFYERKEIKDAIAYLQAVANPDDTVSVRRILNEPRRGLGAKAEETVAAHAARYG 498
Query: 699 TIRKCSFISAACDIFGAKISGTFKRSQLT-QGRKVLLTLEMISKLVRREPSISAVITSVA 757
SF +A D+ + + R+ + Q R + I+ V I A +VA
Sbjct: 499 ----ISFGAALTDVAHPDDAASAGRATVGLQAR----SANAITDFVVMLEEIRA--KAVA 548
Query: 758 NMVPQKYLLEQRAVVDFDGGKL-LNEDNDLRSVLQYL-LADVTDFLSTKFTAAKEEGNVD 815
P L E ++D G + L ND + ++ LA++ +++ F+ E G
Sbjct: 549 GAPPADILDE---IMDRSGYLVSLQRSNDPQDEVRVENLAELHS-VASDFSVVNEAG--- 601
Query: 816 QDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANET 875
L F+D +S E V L T+H +KGLE+ +VFV +
Sbjct: 602 --------TLGDFLDQVSLVADSDQIPDEDGGEGEVVLMTVHTAKGLEFPVVFVTGMEDG 653
Query: 876 EIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSRFL 932
P + N + YVA TRAR++L+I + W Q L SRFL
Sbjct: 654 TFPHIRAMNAPEELEEERRL-----AYVAFTRARQRLYITRAGSRSQWGAPQELPASRFL 708
Query: 933 KEIP 936
+EIP
Sbjct: 709 EEIP 712
>gi|403387763|ref|ZP_10929820.1| ATP-dependent DNA helicase PcrA [Clostridium sp. JC122]
Length = 746
Score = 233 bits (594), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 205/721 (28%), Positives = 340/721 (47%), Gaps = 113/721 (15%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EAA + P+LI+AG GSGK I PS ILA+TFT AA
Sbjct: 7 LNKEQYEAAST-VDGPVLILAGAGSGKTRVLTYRIAHMIEDLNIYPSQILAITFTNKAAG 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++RI +VG A+ + ISTFHS +++ R +KL F IY + + + +
Sbjct: 66 EMKERIAKLVGD-VAESMWISTFHSSCVRILRREIDKLGYNKNFTIYDSYDSKTLVKQCI 124
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ L D TDG L + + + D +
Sbjct: 125 KELN----------INDKDITDGEI----------------------LGKISNAKNDLIT 152
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
K + +FRK ++I A L Y L++ NALD+ DLI +VKLL EV + Y
Sbjct: 153 ADKFKSENQNDFRK--NKIADAYLL-YQKKLKANNALDFDDLIFITVKLLKENQEVREFY 209
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q ++ I+VDE+QDT+ QY L+++L I +VGDDDQ I+ + GADI F KD
Sbjct: 210 QRKFRYIMVDEYQDTNRAQYELVKLLVGVEENICVVGDDDQCIYQWRGADIRNILDFEKD 269
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
+ K ++L +NYRS I+ AA+ +I++N +R K ++T++ G KI + ++ +
Sbjct: 270 YPKTKIVKLEQNYRSKGNILTAANMVIKNNAQRKD-KVLRTESEPGEKIKLYRAFSDIDE 328
Query: 592 CAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVAFY 648
F+ +I L N +Y A+LYR ++ + AFR++ IP+ I G+ FY
Sbjct: 329 GNFVASEIKRLMREENK-----TYKDFAVLYRMNSQSRILEEAFRKQDIPYKIVGGLKFY 383
Query: 649 RKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISA 708
+K ++ I+A L+ DD RR+ E K+ + D ++ +++ + ++
Sbjct: 384 DRKEIKDIMAYLKLINNPLDDVSLRRII-------NEPKRSIGDAT--VAKVQEVANMAE 434
Query: 709 ACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLL-- 766
C + T + G LT + I+ + R +++++ +M K +L
Sbjct: 435 DC------LYNTLLDVDMIPG----LTTKAINSINRFTGIVNSLMARTDDMSISKIILSV 484
Query: 767 -EQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVL 825
E+ +D ED L+ L++D DF T ++DK L
Sbjct: 485 IEETGYMDMLKKSKAPEDETRIENLKELVSDAVDFEKT-----------NEDKS-----L 528
Query: 826 KAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFN 884
AF++ ++ + ++ + E + + T+H +KGLE+ +VF+ P + N
Sbjct: 529 SAFLEKVTLVSDIDNL----EEKEETTVMMTVHSAKGLEFPVVFLVGMENGIFPGMSSLN 584
Query: 885 GAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHHLRE 941
+EE RRL YVA+TRA++KL++ M+ + S F+ EIP +L+E
Sbjct: 585 SF-----HEMEESRRLCYVAITRAKEKLYVSSAESRMVFGRTVSYEVSDFVAEIPQNLKE 639
Query: 942 V 942
+
Sbjct: 640 I 640
>gi|56418810|ref|YP_146128.1| ATP-dependent DNA helicase [Geobacillus kaustophilus HTA426]
gi|56378652|dbj|BAD74560.1| ATP-dependent DNA helicase [Geobacillus kaustophilus HTA426]
Length = 724
Score = 233 bits (594), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 223/738 (30%), Positives = 338/738 (45%), Gaps = 136/738 (18%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFT 287
K L LN +Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 7 KLLAHLNKEQQEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKQVAPWNILAITFT 65
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM++R+ +++G A A+++ ISTFHS +++ R +++ F I
Sbjct: 66 NKAAREMKERVQALLGGA-AEDVWISTFHSMCVRMLRRDIDRIGINRNFSI--------- 115
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
L +++ V+K I D K KFE
Sbjct: 116 ------LDPTDQLSVIKAILKD-----------------------------KNIDPKKFE 140
Query: 408 RDGMDVAKASGK-----TPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCS 458
+ +A SG TP +F K ++I + + Y L ++LD+ DLI +
Sbjct: 141 PRTI-LATISGAKNDLLTPEQFAKRASTYYEKIVGDVYQEYQQRLLRNHSLDFDDLIMTT 199
Query: 459 VKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSF 517
+ L P+V Q YQ ++ I +DE+QDT+ QY+L++ LA I VGD DQSI+ +
Sbjct: 200 IHLFDRVPDVLQYYQYKFQYIHIDEYQDTNRAQYTLVKKLADRFQNICAVGDADQSIYRW 259
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GADI SF +D+ N K I L +NYRST+ I++AA+ +I HNV R + K + T+N G
Sbjct: 260 RGADIRNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIAHNVNR-KPKRLWTENPEG 318
Query: 578 SKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERK 637
I+ E NE + F+ +I E +G Y A+LYR +V + F +
Sbjct: 319 KPIVYYEAMNEVDEAQFVARRIQEAVESGER---RYRDFAVLYRTNAQSRVIEEMFLKAN 375
Query: 638 IPFNI-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDK 696
IP+ I G+ FY +K ++ I+A LR DD R+ + ++ ID + +
Sbjct: 376 IPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIIN---VPKRGIGASTIDKLVR 432
Query: 697 ISTIRKCSFISAACDI----FGAKISGTFK--RSQLTQGRKVLLTLEMISKLVRREPSIS 750
+ + S A ++ F AK +G R QL Q
Sbjct: 433 YAAEHELSLFEALGELEMIGFSAKTAGALAAFRGQLEQW--------------------- 471
Query: 751 AVITSVANMVPQKYLLEQRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAK 809
T + VP L+E+ V+D G + +L + + + Q L ++ +FLS K
Sbjct: 472 ---TQLQEYVPVTELVEE--VLDQSGYREMLKAERTIEA--QSRLENLDEFLSV----TK 520
Query: 810 EEGNVDQDKKGCINVLKAFID---YISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDI 866
NV DK L AF+ IS+ + E T + ++V T+H +KGLE+ +
Sbjct: 521 HFENVSDDKS-----LVAFLTDLALISDLD-ELNGTDQAAEGDAVVFMTLHAAKGLEFPV 574
Query: 867 VFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD---ANW 923
VF+ E P + +EEERRL YV +TRA ++L + M N
Sbjct: 575 VFLIGMEEGIFPHLRSLENE-----DEMEEERRLAYVGITRAEEELVLTNAQMRTLFGNI 629
Query: 924 QLLQPSRFLKEIPHHLRE 941
Q+ +PSRFL EIP HL E
Sbjct: 630 QMNRPSRFLDEIPAHLLE 647
>gi|448236573|ref|YP_007400631.1| ATP-dependent DNA helicase [Geobacillus sp. GHH01]
gi|445205415|gb|AGE20880.1| ATP-dependent DNA helicase [Geobacillus sp. GHH01]
Length = 725
Score = 233 bits (594), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 223/738 (30%), Positives = 338/738 (45%), Gaps = 136/738 (18%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFT 287
K L LN +Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 8 KLLAHLNKEQQEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKQVAPWNILAITFT 66
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM++R+ +++G A A+++ ISTFHS +++ R +++ F I
Sbjct: 67 NKAAREMKERVQALLGGA-AEDVWISTFHSMCVRMLRRDIDRIGINRNFSI--------- 116
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
L +++ V+K I D K KFE
Sbjct: 117 ------LDPTDQLSVIKAILKD-----------------------------KNIDPKKFE 141
Query: 408 RDGMDVAKASGK-----TPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCS 458
+ +A SG TP +F K ++I + + Y L ++LD+ DLI +
Sbjct: 142 PRTI-LATISGAKNDLLTPEQFAKRASTYYEKIVGDVYQEYQQRLLRNHSLDFDDLIMTT 200
Query: 459 VKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSF 517
+ L P+V Q YQ ++ I +DE+QDT+ QY+L++ LA I VGD DQSI+ +
Sbjct: 201 IHLFDRVPDVLQYYQYKFQYIHIDEYQDTNRAQYTLVKKLADRFQNICAVGDADQSIYRW 260
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GADI SF +D+ N K I L +NYRST+ I++AA+ +I HNV R + K + T+N G
Sbjct: 261 RGADIRNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIAHNVNR-KPKRLWTENPEG 319
Query: 578 SKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERK 637
I+ E NE + F+ +I E +G Y A+LYR +V + F +
Sbjct: 320 KPIVYYEAMNEVDEAQFVARRIQEAVESGER---RYRDFAVLYRTNAQSRVIEEMFLKAN 376
Query: 638 IPFNI-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDK 696
IP+ I G+ FY +K ++ I+A LR DD R+ + ++ ID + +
Sbjct: 377 IPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIIN---VPKRGIGASTIDKLVR 433
Query: 697 ISTIRKCSFISAACDI----FGAKISGTFK--RSQLTQGRKVLLTLEMISKLVRREPSIS 750
+ + S A ++ F AK +G R QL Q
Sbjct: 434 YAAEHELSLFEALGELEMIGFSAKTAGALAAFRGQLEQW--------------------- 472
Query: 751 AVITSVANMVPQKYLLEQRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAK 809
T + VP L+E+ V+D G + +L + + + Q L ++ +FLS K
Sbjct: 473 ---TQLQEYVPVTELVEE--VLDQSGYREMLKAERTIEA--QSRLENLDEFLSV----TK 521
Query: 810 EEGNVDQDKKGCINVLKAFID---YISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDI 866
NV DK L AF+ IS+ + E T + ++V T+H +KGLE+ +
Sbjct: 522 HFENVSDDKS-----LVAFLTDLALISDLD-ELNGTDQAAEGDAVVFMTLHAAKGLEFPV 575
Query: 867 VFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD---ANW 923
VF+ E P + +EEERRL YV +TRA ++L + M N
Sbjct: 576 VFLIGMEEGIFPHLRSLENE-----DEMEEERRLAYVGITRAEEELVLTNAQMRTLFGNI 630
Query: 924 QLLQPSRFLKEIPHHLRE 941
Q+ +PSRFL EIP HL E
Sbjct: 631 QMNRPSRFLDEIPAHLLE 648
>gi|148981244|ref|ZP_01816335.1| ATP-dependent DNA helicase Rep [Vibrionales bacterium SWAT-3]
gi|145960940|gb|EDK26267.1| ATP-dependent DNA helicase Rep [Vibrionales bacterium SWAT-3]
Length = 672
Score = 233 bits (594), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 204/736 (27%), Positives = 352/736 (47%), Gaps = 97/736 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQECGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G +GK AK L +STFH+ L + R + L + F ++
Sbjct: 62 EMKERVGQTLGKGEAKGLIVSTFHTMGLTIIRREYKALGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ + DG +RA L ++S++K D +
Sbjct: 110 ---DQDQLALLKELTERQI--DGDKDLLRA--------LMSAISNWK--------NDMLT 148
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
+A + E +++ A E Y +++ NALD+ DLI+ V+LL T EV + +
Sbjct: 149 PEQAKARAQGE----QEQLFAFCFEMYQKQMKAYNALDFDDLIALPVQLLKTNQEVRERW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q + ++VDE+QDT+ QY L+++L R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QSRIRYLLVDEYQDTNTSQYELVRLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
+ N + I+L +NYRST I+ AA+ LI +N + K++ ++ G K+ + NE+ +
Sbjct: 265 YPNLRLIKLEQNYRSTSRILRAANILIANNPHVYE-KSLFSEIPDGEKLKVLNAKNEEHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
I +I+ H + Y A+LYR ++ + A + ++P+ I G +F+ +
Sbjct: 324 AERITGEIIAHKF---LNRTEYKDYAVLYRGNHQSRLIEKALMQNRVPYKISGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ +E ++ + + +R S A+
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PRREIGPVTLEKLGSYANMRGKSLFEAS- 436
Query: 711 DIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRA 770
F + T L R+ + IS R ++ AV V ++ + +L E A
Sbjct: 437 --FEMGLEQTLTGRGLENLRRFTDWIVRISDNAERGNTVDAVRALVRDINYEDWLYETSA 494
Query: 771 VVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAFI 829
+ + +V+D S + A EG N D+++K L+ +
Sbjct: 495 SP---------------KAAEMRMKNVSDLYS--WIVADLEGDNYDKEEK----TLREVV 533
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
++ R+ R + D+ + V L T+H SKGLE+ V++ E +P H+ +V+E
Sbjct: 534 QRLTLRDMME-RGEDDDDADQVQLMTLHASKGLEFPYVYLMGTEEGILP--HQ--TSVDE 588
Query: 890 KGTSVEEERRLLYVAMTRARKKLFILYVMMDANW-QLLQP--SRFLKEIPHHLREVQAEQ 946
+VEEERRL+YV +TRA+K+L + +L++P SRFL E+PH E ++ +
Sbjct: 589 --GNVEEERRLMYVGITRAQKELTFTKCRERRQFGELIKPTQSRFLDELPHDDVEWESVK 646
Query: 947 SVQDQHENIPEGTAQF 962
Q E + +G A
Sbjct: 647 KPQSAEERMEKGQAHI 662
>gi|385801390|ref|YP_005837793.1| putative ATP-dependent DNA helicase PcrA [Gardnerella vaginalis
HMP9231]
gi|333394012|gb|AEF31930.1| putative ATP-dependent DNA helicase PcrA [Gardnerella vaginalis
HMP9231]
Length = 948
Score = 233 bits (594), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 231/821 (28%), Positives = 377/821 (45%), Gaps = 131/821 (15%)
Query: 182 EETHQNDNSCTHLNASLESVTTNENIRMDISMD-LAGDMKS----SMEKTDTIQT----- 231
+ + Q+D S + +A + NE++ ++S +AGD + S++ + T Q+
Sbjct: 16 DSSEQSDASVS--DAPISDAPINEDMTSEVSASTVAGDFSAKYSNSVQSSQTAQSSAAAQ 73
Query: 232 -----IKTQNMPD-EYSKYLQSLNDQQLEAACGDMSTP-LLIVAGPGSGKG--------- 275
++ N+P+ L+ LN QQ +A + P LLI AG GSGK
Sbjct: 74 YSQTSAQSSNIPEINPQSLLEGLNPQQSKAV--QYTGPALLIGAGAGSGKTRVLTRRIAW 131
Query: 276 ------ISPSNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEK 329
PS ILA+TFT AA+EMR+R+ S++G +AK + +STFHS +++ R+H +
Sbjct: 132 ILANRKAWPSQILAITFTNKAAAEMRERLASLIGN-SAKSMWVSTFHSACVKILRAHGDS 190
Query: 330 LERTSEFLIYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNA 389
+ S F IY R V+++ +E + +K+ + +L + + S F N
Sbjct: 191 IGLKSGFSIYDSSDCERL----VKIIASELNIDIKKFTPKLLLS-------KISEFKNNL 239
Query: 390 MLFFSMSSFKLCQYNKFERDGMDVAKASGKTPAEFRKIG--DEIGAAILENYNGILRSCN 447
+ + L Y + G V+ AS F G D + AA+ Y L N
Sbjct: 240 VTW----QENLKNYAPDYKPGASVSGAS-----SFNAAGNADALYAAVYAEYQNRLSVSN 290
Query: 448 ALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS------- 500
A+D+ DLI +VKLL P+V Y+ ++ I+VDE+QDT+ QY L++ LA
Sbjct: 291 AVDFDDLIMLTVKLLRQNPQVSAYYKRKFRYILVDEYQDTNHAQYVLIRELAGVDDYSTD 350
Query: 501 -----------HNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRC 549
+ IT+VGD DQSI++F GADI F +DF + I L +NYRST+
Sbjct: 351 STVSPDSTQLPQSSITVVGDSDQSIYAFRGADIRNIQDFEQDFPSATTIMLEQNYRSTQT 410
Query: 550 IVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPAS 609
I++AA+++I +N R + K + T GS I+ N + +++ +I A
Sbjct: 411 ILDAANAVISNNANR-KPKKLWTSLGKGSPIVGYVADNAQGEASWVAQEIARLAGEDG-- 467
Query: 610 ICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCD 668
+Y IAI+YR + + A + +P+ + G FY ++ V+ +A L++ D
Sbjct: 468 -VNYSDIAIMYRANSQSRSLEDALIKSGLPYQLVGGTKFYERREVKDALAYLQSIANPDD 526
Query: 669 DGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKIS---GTFKRS- 724
D RR+ + ++ R I + SF SA I KI+ G R+
Sbjct: 527 DVNMRRILN---VPKRGLGARAESQITSYAKENSISFWSALSQI--DKIAEQIGISSRTF 581
Query: 725 -QLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNED 783
L R ++ +L K +PS V N++ + LL+ L E
Sbjct: 582 NALKSFRDLMTSLIDFMKANDSKPS-----KVVENVLNESGLLQD-----------LRES 625
Query: 784 NDLRSVLQYLLADVTDFLSTKFTAAKEEGNV-DQDKKGCINVLKAFIDYISERETEHFRT 842
D + + V + + AA+ E N D + G + D ++
Sbjct: 626 KDPQDEFR-----VDNLSQLQSVAAEYEQNTPDANVAGFLETTALVAD------SDQLPD 674
Query: 843 QRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLY 902
Q D VTL T+H +KGLE+ +VF+ + P + N+K + EERRL Y
Sbjct: 675 QGEDT-GKVTLMTLHTAKGLEYPVVFLTGMEQGTFPHSRCVD---NQK--ELCEERRLAY 728
Query: 903 VAMTRARKKLFILYVMMDANW----QLLQPSRFLKEIPHHL 939
V +TRA+K L++ + + W +++Q S+FL EIP L
Sbjct: 729 VGITRAKKILYVTWAAERSQWGKSAEMIQ-SQFLDEIPADL 768
>gi|222151885|ref|YP_002561045.1| ATP-depentend DNA helicase [Macrococcus caseolyticus JCSC5402]
gi|222121014|dbj|BAH18349.1| ATP-depentend DNA helicase [Macrococcus caseolyticus JCSC5402]
Length = 721
Score = 233 bits (594), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 209/728 (28%), Positives = 341/728 (46%), Gaps = 111/728 (15%)
Query: 245 LQSLNDQQLEAACGDMST--PLLIVAGPGSGK---------------GISPSNILAMTFT 287
L+ +N++Q +A M+T PLLI+AG GSGK +SP ILA+TFT
Sbjct: 5 LKHMNEEQRQAV---MTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKDVSPYKILAITFT 61
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM++R+ I+G + + ISTFHS +++ R +++ F I QR
Sbjct: 62 NKAAKEMKERVKKIIGDES-DVIWISTFHSMCVRILRRDIDRIGIERNFTILDPTDQRSV 120
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
+ + ++KR + D D M +S+ K N+ +
Sbjct: 121 VKD-----------ILKRENIDPKKYDPR-------------MFVAEISNLK----NEMK 152
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ AS K+ E +L+N+ ALD+ DLI +++L PE
Sbjct: 153 SPDDAIEAASDFMGMMISKVYAEYQRVLLKNH--------ALDFDDLIMTTIQLFERVPE 204
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFD 526
V YQ ++ I VDE+QDT+ QY L+++LA I +VGD DQSI+ + GADI
Sbjct: 205 VLDYYQSKFQYIHVDEYQDTNRAQYLLVKMLADKFKNICVVGDSDQSIYGWRGADIYNIL 264
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
SF D+ K I L RNYRST+ I+ AA+ +I++N +R + K + TDN HGSKI +
Sbjct: 265 SFEDDYKEAKTIFLERNYRSTKNILFAANEVIKNNTER-KPKALWTDNDHGSKINYYKAM 323
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
+E A+ +I+ +IL+ A +AILYR +V + + I + + G
Sbjct: 324 SERAEAEYIVAEILKKKRENYA----LSDMAILYRTNAQSRVIEETLMKSNISYTMVGGT 379
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIRKC 703
FY +K ++ +++ LR +D + R+ KR I +DKI T +
Sbjct: 380 KFYDRKEIKDLLSYLRLVANSNEDISFTRIINT--------PKRGIGPGALDKIITYAEH 431
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
+ +S + G K++ K++ M+ L++++ +S IT + M
Sbjct: 432 NGLSYFDALAEVDFIGLPKKTT----EKLVEFYTMMDNLMKQQEFLS--ITELTQM---- 481
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
LL++ + K+L +N L S Q + ++ +F++ K+ +Q +
Sbjct: 482 -LLDKSGYM-----KMLEAENTLES--QSRIENIQEFMNVPKDYEKDTPVEEQSLINFLT 533
Query: 824 VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
L+ D D E VTL T+H +KGLE+ +VF+A E+ P
Sbjct: 534 DLQLVAD-----------VDNADLEAGVTLMTMHSAKGLEFKVVFIAGLEESIFPHSRSL 582
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD---ANWQLLQPSRFLKEIPHHLR 940
N + +EEERRL+YVA+TRA + L++ + M Q + SRF+ EIP +
Sbjct: 583 NS-----DSEMEEERRLMYVAITRAEEHLYLSHAEMRNLFGRTQANKKSRFISEIPEDIL 637
Query: 941 EVQAEQSV 948
+V + +
Sbjct: 638 DVPVARKI 645
>gi|414158557|ref|ZP_11414851.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. F0441]
gi|410871102|gb|EKS19059.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. F0441]
Length = 763
Score = 233 bits (594), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 214/732 (29%), Positives = 341/732 (46%), Gaps = 121/732 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDSQAEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R + S+S+ K +
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERT--------ILGSISNAKNDLID----- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR +LD+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESLDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ ++E
Sbjct: 266 EKDYPNAKVVLLEENYRSTKTILQAANDVIKNNKNR-RPKNLWTQNADGEQIVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+ I E G + + A+LYR + + A + IP+ + G F
Sbjct: 325 QDEAVFVAKTIDEL---GRSQNFLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRK 702
Y +K +R IIA L D+ + R+ E KR ++ I + ++
Sbjct: 382 YSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANMQD 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ +I + + G +S +L E + +L +I+ ++ +V
Sbjct: 434 MSMLDASANIMLSGVKGKAAQSIWEFANMILDLREQLDQL-----TITELVEAV------ 482
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
LE+ VD +LN L S + + ++ +FLS T ++ Q+++ +
Sbjct: 483 ---LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSV--TKKFDDNPESQEEETGL 530
Query: 823 NVLKAFID---YISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
+ L F++ I++ ++ T + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 531 DKLSRFLNDLALIADTDSSSQET------SEVTLMTLHAAKGLEFPVVFIIGMEENVFPL 584
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFL 932
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 585 SR-----AAEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTSYNRPTRFI 635
Query: 933 KEIPHHLREVQA 944
EI L E Q
Sbjct: 636 NEISSDLLEYQG 647
>gi|426405231|ref|YP_007024202.1| ATP-dependent DNA helicase [Bdellovibrio bacteriovorus str.
Tiberius]
gi|425861899|gb|AFY02935.1| ATP-dependent DNA helicase [Bdellovibrio bacteriovorus str.
Tiberius]
Length = 762
Score = 233 bits (594), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 212/728 (29%), Positives = 340/728 (46%), Gaps = 123/728 (16%)
Query: 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSN-ILAMTFTTAA 290
++LN Q +A + PLLI+AG GSGK G++ S+ IL +TFT A
Sbjct: 9 KNLNPAQKDA-VETLEGPLLILAGAGSGKTRVLTHRMANMIGQGVAASDEILCVTFTNKA 67
Query: 291 ASEMRDRIGSIV---GKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
A EM RI I+ G +L I+TFHSF +++ R H L+ F IY Q
Sbjct: 68 AKEMEHRIYKILADMGAIVHTQLWINTFHSFCVRVLRQHITLLDYKPFFGIYDSSDQLSQ 127
Query: 348 IIEAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
I + + L+ N+K+ K + +SS K+ +
Sbjct: 128 IKKVMTALDINDKMYPAKNFQS-------------------------RISSAKMMGLSP- 161
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
+G++ K+S +++ D+ + + Y ++ N+LD+ DL+ + L +P
Sbjct: 162 --EGLE--KSS-------KRLMDQKTVEVYKAYEREMKKANSLDFDDLLLKTYDLFRMYP 210
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGF 525
+V Q YQ ++ I+VDE+QDT+ +QY L+Q+LAS H + +VGD+DQSI+S+ GADI
Sbjct: 211 DVLQMYQKKFRYIMVDEYQDTNHIQYLLVQMLASAHRNLCVVGDEDQSIYSWRGADIKNI 270
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
F KDF + K I+L NYRS+ IV A+++I++N +R K + T N G I ++E
Sbjct: 271 LDFEKDFRDAKVIKLEENYRSSANIVNGATAVIKNNSQRKD-KTLFTSNEPGDLIHVREE 329
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHG 644
NE + F+ I + G S Y AI YR +V + R IP+ + G
Sbjct: 330 KNEYEEGRFVAKTIQSMINEGEGSHNDY---AIFYRTNAQSRVLEEQLRTMGIPYRLVGG 386
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCS 704
V FY + ++ +I+ ++ ++ DD +R+ + + K I+ I++ + + S
Sbjct: 387 VRFYERMEIKDMISYMKLSINPADDIALKRIIN---VPARGIGKTTIEKIEEYAAHKNLS 443
Query: 705 FISAA---CD--IFGAKISGTFKR-----SQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
AA CD +F A +G +R L Q + L LE + ++ R ++A+
Sbjct: 444 MFEAAEKSCDERLFNAGTTGKIRRFVDLMKDLQQNAQHLKLLEFFAVVLDRTEYLAALKK 503
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
+ E +A ++ L DN + +Q
Sbjct: 504 DESP--------ESQARIE----NLEELDNAIAQFVQ----------------------- 528
Query: 815 DQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
++G + L +F++ ++ Q ++ +TL H SKGLE+ VFV E
Sbjct: 529 ---ERGEESTLISFLEEMALVNDVDSLNQEQNSVTMMTL---HISKGLEYPYVFVVGLEE 582
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSRF 931
P A ++ VEEERRL YV MTRAR+KL++ Y M W Q PSRF
Sbjct: 583 NLFPSAR---SAESDSEEDVEEERRLAYVGMTRARQKLWLTYAKMRRVWGQEQFNPPSRF 639
Query: 932 LKEIPHHL 939
+KEIP +L
Sbjct: 640 IKEIPQNL 647
>gi|256847800|ref|ZP_05553245.1| ATP-dependent DNA helicase PcrA [Lactobacillus coleohominis
101-4-CHN]
gi|256715489|gb|EEU30465.1| ATP-dependent DNA helicase PcrA [Lactobacillus coleohominis
101-4-CHN]
Length = 759
Score = 233 bits (594), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 199/725 (27%), Positives = 338/725 (46%), Gaps = 94/725 (12%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +ND+Q EA P+L++AG GSGK + P +ILA+TFT
Sbjct: 5 LAGMNDKQQEAVLA-TEGPVLVMAGAGSGKTRVLTHRVAYLIEEKNVLPWHILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++RIG ++G +A ++ +STFH+ +++ R +KL + F I G+QR
Sbjct: 64 AAREMKERIGKLLGD-SANDIWVSTFHALCVRILRRDIDKLGFNTAFTIADPGEQR---- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI ++ F + +++A+ S + + +++E+
Sbjct: 119 -----------TLMKRICAELNIDTKKFDPRQ----ILSAI---SNAKNAMMTPDEYEKR 160
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D FRK+ +G A Y L + LD+ DLI +++L E
Sbjct: 161 YQD----------PFRKM---VGRA-YRLYQRELETNQTLDFDDLIMKTIQLFKADAETL 206
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDSF 528
Q YQD ++ I VDE+QDT+ QY L+ +LA ++ + +VGD DQSI+ + GA+++ +F
Sbjct: 207 QYYQDKFQYIHVDEYQDTNDAQYELVHMLADGYHNLCVVGDADQSIYGWRGANMNNILNF 266
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N I L +NYRST+ I+ AA+ +I +N KR KN+ T+N G KI +E
Sbjct: 267 EKDYPNATTIMLEQNYRSTQTILNAANEVIANNQKRKD-KNLWTENGQGDKISYYRAQSE 325
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ +++ KI E YG A+LYR ++ + F + +P+ + G F
Sbjct: 326 HDEAYYVVKKIQEQMREHG---YKYGDFAVLYRTNAQSRIIEETFLKSSVPYTMVGGHKF 382
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y +K +R I+A L D + RV ++ I+ + + S ++
Sbjct: 383 YDRKEIRDILAYLTLVANPNDSMSFERVVNT---PKRGIGPTSIEKLRDFAATNNMSLLT 439
Query: 708 AACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLE 767
A +I A T R++L + + T++ + E SI+ + + + L+
Sbjct: 440 ATQNIMLANQISTSVRNKLDGFAQEMRTIQDQAD----ELSITELTDLILERTGYRKALQ 495
Query: 768 QRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKA 827
A L+ ++ +SV Q ++ N D N +
Sbjct: 496 DEAEKSLQAQSRLDNLDEFKSVTQEF----------------DKNNADD----AANAQEK 535
Query: 828 FIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAV 887
++++ + D EN+VTL T+H +KGLE+ +VF+ ++ P+ N A
Sbjct: 536 LTRFLTDLALVSPQDDIEDQENTVTLMTLHAAKGLEFPVVFLIGMEQSIFPMARALNNA- 594
Query: 888 NEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSRFLKEIPHHLREVQA 944
EEERRL YV +TRA+KKLF+ M + +Q S F+ EI L + +
Sbjct: 595 ----EEEEEERRLAYVGITRAQKKLFLTNAMSRVLYGRIQRNPESEFVDEIDDKLLDFDS 650
Query: 945 EQSVQ 949
+QS++
Sbjct: 651 QQSIR 655
>gi|406909012|gb|EKD49363.1| hypothetical protein ACD_63C00170G0003 [uncultured bacterium]
Length = 680
Score = 233 bits (594), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 208/766 (27%), Positives = 361/766 (47%), Gaps = 139/766 (18%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
L++LN +Q+EA +S P+LI+AG GSGK G+ P NILA+TFT A
Sbjct: 7 LKNLNKEQIEAVKA-ISGPVLIIAGAGSGKTRTLAHRVAYLISKGVKPWNILAVTFTNKA 65
Query: 291 ASEMRDRIGSIV-----GKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQR 345
A+EM++R+ I+ +K I TFHS ++ R + S FLIY Q
Sbjct: 66 ANEMKERVIKILKIDKKNYFYSKMPVIGTFHSVCARILRQEVGVIGFDSNFLIYDTTDQL 125
Query: 346 RAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNK 405
A+ + +R L + T D + RA L M+++
Sbjct: 126 GAVRKVMREL-------------GINTKDYN---PRAVLGMISS---------------- 153
Query: 406 FERDGMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKL 461
AK P + + D E+ + I Y +L NALD+ DL+ +V++
Sbjct: 154 --------AKNELIGPEGYEESADGHIQELVSRIYFGYRKLLEDNNALDFDDLLMKTVQI 205
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGA 520
+P+ ++YQ ++ I+VDE+QDT+ QY ++ +LA H I +VGDD Q+I+S+ GA
Sbjct: 206 FEKYPQFLKKYQKKFQHILVDEYQDTNHAQYVIVNLLAKGHRNICVVGDDAQAIYSWRGA 265
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
DI F +D+ N K +L +NYRST+ I+ AA +I+ N+ + KN+ T+N G K+
Sbjct: 266 DIRNILEFERDYPNAKVFKLEQNYRSTKNILNAARKVIEENINKKD-KNLWTNNVEGEKV 324
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICS----YGSIAILYRRQVSGKVFQTAFRER 636
E +E + F+++K + + S + +A+LYR +V + A
Sbjct: 325 KAYEAIDEMDEAMFVLEKAKVRSQKAKVKVKSQKFTFSDMAVLYRTNAQSRVLEEALLSE 384
Query: 637 KIPFNIHG-VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVF----KAFLLLEK--EEKKR 689
IP+ I G + FY +K ++ ++A LR D +RR+ K +E+ E+K
Sbjct: 385 GIPYRIVGALRFYERKEIKDMLAYLRVVASDRDFMSFRRIASGGEKTLDAVERFLREEKS 444
Query: 690 VIDHIDKISTIRKCSFISAACDIFGAKISGTFK-----RSQLTQGRKVLLTLEMISKLVR 744
+I I+K+ + + + S ++ +FK ++ L + RK L
Sbjct: 445 IIGGIEKLRSKYQKNVQSPVSSF--SRFKKSFKKLDELKNVLEESRKFL----------- 491
Query: 745 REPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTK 804
+ ++S ++ VA K +L + +G +L+SV ++K
Sbjct: 492 KNNTVSGLVDFVARKSGYKKMLLDGTL---EGEARWENVCELKSV------------ASK 536
Query: 805 FTAAKEEGNVDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLE 863
++ +E L+ F++ ++ ++T+++ +N +++TL T+H +KGLE
Sbjct: 537 YSKGAKE-------------LEKFLEEVALVQDTDNY----DENTDAMTLMTLHAAKGLE 579
Query: 864 WDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMD 920
+ IVF+ E P + +EEERRL YV MTRA+ +L++L +
Sbjct: 580 FPIVFICGMEEGLFPHARSYIDP-----EQMEEERRLCYVGMTRAKSELYLLCASSRKLF 634
Query: 921 ANWQLLQPSRFLK-EIPHHLREVQAEQSVQDQHENIPEGTAQFTIN 965
QL QPS+FL+ E + + ++ ++++ + PEG +N
Sbjct: 635 GRTQLSQPSQFLEIENLEWIDRLDGDELIKNEKK--PEGILDKILN 678
>gi|375007156|ref|YP_004980788.1| ATP-dependent DNA helicase PcrA [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|359286004|gb|AEV17688.1| ATP-dependent DNA helicase PcrA [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 725
Score = 233 bits (593), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 223/738 (30%), Positives = 338/738 (45%), Gaps = 136/738 (18%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFT 287
K L LN +Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 8 KLLAHLNKEQQEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKQVAPWNILAITFT 66
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM++R+ +++G A A+++ ISTFHS +++ R +++ F I
Sbjct: 67 NKAAREMKERVQALLGGA-AEDVWISTFHSMCVRMLRRDIDRIGINRNFSI--------- 116
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
L +++ V+K I D K KFE
Sbjct: 117 ------LDPTDQLSVIKAILKD-----------------------------KNIDPKKFE 141
Query: 408 RDGMDVAKASGK-----TPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCS 458
+ +A SG TP +F K ++I + + Y L ++LD+ DLI +
Sbjct: 142 PRTI-LATISGAKNDLLTPEQFAKRASTYYEKIVGDVYQEYQQRLLRNHSLDFDDLIMTT 200
Query: 459 VKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSF 517
+ L P+V Q YQ ++ I +DE+QDT+ QY+L++ LA I VGD DQSI+ +
Sbjct: 201 IHLFDRVPDVLQYYQYKFQYIHIDEYQDTNRAQYTLVKKLADRFQNICAVGDADQSIYRW 260
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GADI SF +D+ N K I L +NYRST+ I++AA+ +I HNV R + K + T+N G
Sbjct: 261 RGADIRNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIAHNVNR-KPKRLWTENPEG 319
Query: 578 SKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERK 637
I+ E NE + F+ +I E +G Y A+LYR +V + F +
Sbjct: 320 KPIVYYEAMNEVDEAQFVARRIQEAVESGER---RYRDFAVLYRTNAQSRVIEEMFLKAN 376
Query: 638 IPFNI-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDK 696
IP+ I G+ FY +K ++ I+A LR DD R+ + ++ ID + +
Sbjct: 377 IPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIIN---VPKRGIGASTIDKLVR 433
Query: 697 ISTIRKCSFISAACDI----FGAKISGTFK--RSQLTQGRKVLLTLEMISKLVRREPSIS 750
+ + S A ++ F AK +G R QL Q
Sbjct: 434 YAAEHELSLFEALGELEMIGFSAKTAGALAAFRGQLEQW--------------------- 472
Query: 751 AVITSVANMVPQKYLLEQRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAK 809
T + VP L+E+ V+D G + +L + + + Q L ++ +FLS K
Sbjct: 473 ---TQLQEYVPVTELVEE--VLDQSGYREMLKAERAIEA--QSRLENLDEFLSV----TK 521
Query: 810 EEGNVDQDKKGCINVLKAFID---YISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDI 866
NV DK L AF+ IS+ + E T + ++V T+H +KGLE+ +
Sbjct: 522 HFENVSDDKS-----LVAFLTDLALISDLD-ELNGTDQAAEGDAVVFMTLHAAKGLEFPV 575
Query: 867 VFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD---ANW 923
VF+ E P + +EEERRL YV +TRA ++L + M N
Sbjct: 576 VFLIGMEEGIFPHLRSLENE-----DEMEEERRLAYVGITRAEEELVLTNAQMRTLFGNI 630
Query: 924 QLLQPSRFLKEIPHHLRE 941
Q+ +PSRFL EIP HL E
Sbjct: 631 QMNRPSRFLDEIPAHLLE 648
>gi|445112347|ref|ZP_21376995.1| hypothetical protein HMPREF0662_00030 [Prevotella nigrescens F0103]
gi|444841571|gb|ELX68585.1| hypothetical protein HMPREF0662_00030 [Prevotella nigrescens F0103]
Length = 811
Score = 233 bits (593), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 205/719 (28%), Positives = 345/719 (47%), Gaps = 105/719 (14%)
Query: 245 LQSLNDQQLEAA--CGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTT 288
L LN+ Q EA C + P L+VAG GSGK G+ P ILA+TFT
Sbjct: 13 LAQLNESQREAVEYC---NGPSLVVAGAGSGKTRVLTYKIAYLIMYGVLPYRILALTFTN 69
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA EM++RIG++V K A L + TFHS ++ R+ A+++ S F IY R
Sbjct: 70 KAAREMKERIGNLVDKDLADRLYMGTFHSVFSRILRAEAQRIGYNSNFTIYDETDSRS-- 127
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
LL++ ++K + D Y A++ + SM+ +L + +
Sbjct: 128 -----LLKS----IIKTLGLD------DKKYKPATVHSI-----ISMAKNQLITADAYAN 167
Query: 409 DGMDVAKASG-KTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
D + K PA + I Y NA+D+ DL+ + +L + +
Sbjct: 168 DKAIWDRDRNMKLPAI---------SQIYTAYQARCHQANAMDFDDLLVNTFRLFNDNAD 218
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFD 526
+ +Y + ++ I+VDE+QDT+ +Q +++++LA+ H R+ +VGDD QSI+SF GA+I
Sbjct: 219 ICNKYAERFQYILVDEYQDTNYVQVAIVKLLAAQHQRVCVVGDDYQSIYSFRGANIDNIL 278
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
F+ F + + +L RNYRST+ IV+A++SL++HN ++ K+V ++ S G+KI + C+
Sbjct: 279 DFQNKFDDVRVFKLERNYRSTQKIVKASNSLMKHNTRQIP-KDVYSEKSDGAKISYRPCY 337
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GV 645
++ + ++ +I + + Y S AILYR + F+ R+ IP+ ++ G+
Sbjct: 338 SDKEEAMVVVKEISKLKC---SQSLEYDSFAILYRTNAQSRSFEDELRKALIPYKMYGGL 394
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFK-AFLLLEKEEKKRVIDHIDKISTIRKCS 704
+FY++K ++ IIA R D+ ++R+ + +++ID +K + S
Sbjct: 395 SFYQRKEIKDIIAYFRLVANPNDEEAFKRIINYPARGIGNTTLQKIIDCANK----NEVS 450
Query: 705 FISAACDI--FGAKISGTFKRSQLTQGRKVLLT--LEMISKLVRREPSISAVITSVANMV 760
D+ +G ++ +G LT +E+I+ +RR + S A +
Sbjct: 451 LWDVVGDVQHYGLDVN---------KGTATKLTDFVELINDFIRR------LAMSDAYTL 495
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
+ + E D G + ED R L+ LL + F + +EE
Sbjct: 496 GSEIIKESGISADLAQGT-MPEDVSRRENLEELLVGIQAFGEDRREEGREE--------- 545
Query: 821 CINVLKAFI-DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
K F+ D++ E ++ D+ V+L TIH +KGLE+ +VFV E P
Sbjct: 546 -----KTFLTDFLQEVALYSDLDKKDDDSPKVSLMTIHSAKGLEFPVVFVVGLEENIFP- 599
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSRFLKEI 935
N +EEERRL YVA+TRA + F+ ++ +Q PSRFLK+I
Sbjct: 600 ----NAMAASSCREIEEERRLFYVAITRAERFCFLTNAKNRYHFGTMQFNNPSRFLKDI 654
>gi|397670785|ref|YP_006512320.1| ATP-dependent DNA helicase PcrA [Propionibacterium propionicum
F0230a]
gi|395141994|gb|AFN46101.1| ATP-dependent DNA helicase PcrA [Propionibacterium propionicum
F0230a]
Length = 798
Score = 233 bits (593), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 211/732 (28%), Positives = 329/732 (44%), Gaps = 97/732 (13%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFT 287
+ L LN+ Q EA +P+L+VAG GSGK G+ P +LA+TFT
Sbjct: 36 ELLADLNEPQREAVV-HAGSPVLVVAGAGSGKTRVLTRRIAHLVGIRGVHPGAVLAITFT 94
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA+EMRDR+ +VG A+ + +STFHS +++ RS ++ F IY +R
Sbjct: 95 NKAAAEMRDRVAGLVGN-QARMMWVSTFHSACVRILRSEIDRFGIARSFSIYDDTDAKRL 153
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
V L+ ++ L KR +RA +MNA+ S +K FE
Sbjct: 154 ----VSLVMRDQELDPKRFP------------VRA---VMNAI-----SGWK-NDLVDFE 188
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
AK P E + A + E+Y LR+ NALD+ DLI +V L FPE
Sbjct: 189 -----TAKEQASGPVE------KANAEVYEDYQARLRAANALDFDDLIMTTVNLFQAFPE 237
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-------------NRITIVGDDDQSI 514
+ ++Y+ ++ ++VDE+QDT+ QY+L++ L + +VGD DQSI
Sbjct: 238 IREKYRRRFRHVLVDEYQDTNHAQYALIRELCGQATPSATGAPTVEPAELMVVGDSDQSI 297
Query: 515 FSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDN 574
++F GA I F DF + I L +NYRST +++AA+++I N R K + +D
Sbjct: 298 YAFRGATIRNILDFENDFPGARTIVLDQNYRSTNTVLQAANAVIARNRGRRD-KALWSDL 356
Query: 575 SHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFR 634
G+ I+ E + F+ +I +G A YG +A+ YR + + F
Sbjct: 357 GDGAPIVGWVADTEHDEAQFVAGEIDRLVDDGRA---RYGDVAVFYRTNAQSRALEEVFI 413
Query: 635 ERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH 693
+P+ + GV FY ++ +R IA LR DD RR+ + ++ R +
Sbjct: 414 RVGMPYRVVGGVRFYERREIRDAIAYLRAIANPADDVSVRRILN---VPKRGIGDRAVAA 470
Query: 694 IDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI 753
+ ++ + F A + G RS V L K+ + +P+ ++
Sbjct: 471 VSSLAGAERICFFEALSR--SEEAPGLAARSAKQIRGFVDLIERHRVKMAQGDPA-DEIL 527
Query: 754 TSVANMVPQKYLLEQRAVVDF-DGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
TSV + YL E + D D +L N + + +++ A L + + G
Sbjct: 528 TSV--LTDSGYLAELQNSTDPQDETRLENLEELVNVAAEFVAAANAVDLDEENESGLAAG 585
Query: 813 NVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKA 872
+ D L AF++ I+ + VTL T+H +KGLE+D VF+
Sbjct: 586 MPEPDAS-----LPAFLERIALVADSDQVPDGEQGQGVVTLMTLHTAKGLEFDTVFLTGM 640
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQP---- 928
E P + E +EEERRL YV +TRARK L + + + QP
Sbjct: 641 EEGVFPHLRAM-----ESQDELEEERRLAYVGITRARKLLHLSRATVRVTFG--QPNHNP 693
Query: 929 -SRFLKEIPHHL 939
SRFL+EIP L
Sbjct: 694 ASRFLEEIPEGL 705
>gi|452911922|ref|ZP_21960584.1| ATP-dependent DNA helicase UvrD/PcrA [Kocuria palustris PEL]
gi|452832887|gb|EME35706.1| ATP-dependent DNA helicase UvrD/PcrA [Kocuria palustris PEL]
Length = 802
Score = 233 bits (593), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 213/749 (28%), Positives = 333/749 (44%), Gaps = 156/749 (20%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK------------GIS---PSNILAMTFTTA 289
L+ LN Q +A +PLLIVAG GSGK G P ILA+TFT
Sbjct: 47 LEGLNGPQRQA-VEHAGSPLLIVAGAGSGKTRVLTHRIAYLLGTGRAHPGEILAITFTNK 105
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EMR+R+ +VG +A+ +++STFHSF +++ R A + S F IY R I
Sbjct: 106 AATEMRERVVELVGP-SARTMSLSTFHSFCVRVLRREATAIGLKSTFSIYDSADSLRVIT 164
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ E L KR + L ++SS K N+ D
Sbjct: 165 AVAKQHE----LDPKRFAPKALQ--------------------HAISSLK----NELIDD 196
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGI---LRSCNALDYHDLISCSVKLLSTFP 466
+++A+G P E A+ + Y G LR+ NALD+ DLIS +V +L FP
Sbjct: 197 ETYLSRATGSDPWE---------QAVAQTYRGYTQRLRAANALDFDDLISQTVHMLRAFP 247
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN---------RITIVGDDDQSIFSF 517
++ + Y+ ++ ++VDE+QDT+ QYSL++ + H +T+VGD DQSI++F
Sbjct: 248 QIAEYYRRRYRHVLVDEYQDTNHAQYSLIREIVGHQGDPTGLPPAELTVVGDSDQSIYAF 307
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GADI F KD+ + + + L +NYRST+ I+ AA+++I N R Q K + T G
Sbjct: 308 RGADIRNITEFEKDYPSARTVLLEQNYRSTQTILSAANAVISRNAGR-QDKRLWTAEGDG 366
Query: 578 SKII---IKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFR 634
++I+ + H E A ID++ + PA +AI YR + +
Sbjct: 367 TEIVGYAAESAHEEARWIAEEIDRLQDAEGIRPA------DVAIFYRTNAQSRSLEEILM 420
Query: 635 ERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH 693
+P+ + G FY +K ++ +A +R L D+ RR+ E KR I
Sbjct: 421 RVGLPYKVVGGTRFYERKEIKDALAYMRALLNPDDEVTVRRIIN--------EPKRGIGD 472
Query: 694 IDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI 753
R ++A + G +R++ G M S+ S++AV
Sbjct: 473 -------RAQGALAALAERDGLSFMDAARRAEEAPG--------MASR------SLNAVK 511
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
V L++ A V E N SV++ +L + T +L T+
Sbjct: 512 AFV-------QLMDDLATV--------AEGNSPASVVEAVL-EQTGYLEALRTSE----- 550
Query: 814 VDQDKKGCINVLKAFIDYISERETEH--------------------FRTQRHDNENSVTL 853
D + + L + + E E EH ++ VTL
Sbjct: 551 -DPQDETRVENLAELVAVVREHEREHPEHGLAEFLEHVALVADADQIPDPDEQSQGVVTL 609
Query: 854 TTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLF 913
T+H +KGLE+ +VF+ P H+ ++K ++EERRL YV +TRAR++L+
Sbjct: 610 MTLHTAKGLEFPVVFLTGMEHGIFP--HQ-RSMTDDK--EMQEERRLAYVGITRARRRLY 664
Query: 914 ILYVMMDANWQLLQ---PSRFLKEIPHHL 939
+ + W Q PS FL+EIP L
Sbjct: 665 LTRAENRSQWGQTQYNPPSPFLEEIPSEL 693
>gi|222153135|ref|YP_002562312.1| ATP-dependent DNA helicase [Streptococcus uberis 0140J]
gi|222113948|emb|CAR42197.1| putative ATP-dependent DNA helicase [Streptococcus uberis 0140J]
Length = 755
Score = 233 bits (593), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 213/735 (28%), Positives = 340/735 (46%), Gaps = 127/735 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VETTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKCVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R +++ +E I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMRER--ALLLNPATQETLIATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+L+N + K +L T + A +++ M + + +S Q
Sbjct: 121 --KRILKNLNLDPKKWNERSILGTISN-----AKNDLLDEMAYEAQASDMYSQ------- 166
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
I A + Y LR A+D+ DLI +++L PEV
Sbjct: 167 ---------------------IVARCYKAYQEELRRSEAMDFDDLIMMTLRLFDKNPEVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 SYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFQNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + K + T N G KI+ ++E
Sbjct: 266 EKDYPKAKVVLLEENYRSTKTILQAANDVIRYNKNRKE-KKLWTQNDQGEKIVYHRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASIC-----SYGSIAILYRRQVSGKVFQTAFRERKIPFN-I 642
+ FI I +++C S+ A+LYR + + AF + IP+ +
Sbjct: 325 RDEAVFIASTI--------SNMCLELGKSFKDFAVLYRTNAQSRTIEEAFLKSNIPYTMV 376
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKIS 698
G FY +K +R +IA L D+ + R+ E K+ V ++ + +
Sbjct: 377 GGTKFYSRKEIRDLIAYLNIVANPSDNISFERIV-------NEPKRGVGPGTLEKLRLYA 429
Query: 699 TIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
+ S + A+ ++F + + G K +Q LLT R+ IT +A
Sbjct: 430 YDSQLSLLEASSNLFLSPLKG--KAAQAITDLATLLT-------SLRQDLDHLSITELAE 480
Query: 759 MVPQKY-LLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQD 817
+ +K LEQ L N L S Q + ++ +FLS T ++ +
Sbjct: 481 ALLEKTGYLEQ-----------LKIQNTLES--QARIENIEEFLSV--TKNFDDNQSPTN 525
Query: 818 KKGCINVLKAFIDYISE-RETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
+ I+ L F++ ++ +T+ +T+ + VTL T+H +KGLE+ +VF+ E
Sbjct: 526 DESGIDTLGRFLNDLALIADTDDDKTESAE----VTLMTLHAAKGLEFPVVFLIGMEEGV 581
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPS 929
PL +E +EEERRL YV +TRA + LF + +AN + L +PS
Sbjct: 582 FPLSR-----ASEDQDELEEERRLAYVGITRAEQILF----LTNANTRTLFGKTNYNRPS 632
Query: 930 RFLKEIPHHLREVQA 944
RFL+EI L Q
Sbjct: 633 RFLREISEDLLAFQG 647
>gi|302670353|ref|YP_003830313.1| ATP-dependent DNA helicase PcrA [Butyrivibrio proteoclasticus B316]
gi|302394826|gb|ADL33731.1| ATP-dependent DNA helicase PcrA [Butyrivibrio proteoclasticus B316]
Length = 847
Score = 232 bits (592), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 214/726 (29%), Positives = 339/726 (46%), Gaps = 119/726 (16%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAA 291
+LN QQ +A P+LI+AG GSGK ++P NI+A+TFT AA
Sbjct: 6 TLNSQQKKAVL-QTDGPVLILAGAGSGKTRVLTHRVAYLIDECNVNPWNIMAITFTNKAA 64
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEA 351
EMR+R+ IVG A+ + +STFHS +++ R +A+KL ++ F IY + + +
Sbjct: 65 GEMRERVDKIVGFG-AESIWVSTFHSSCVRILRRYADKLGFSNNFTIYDTDDSKTLMKDI 123
Query: 352 VRLLENEKI-LVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
+ + E L +++I MSS C+ N +
Sbjct: 124 CKKYQLETTQLKLRQI----------------------------MSSISKCKDNLVSPEE 155
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
+A T +F I +I A LE Y L+ NA+D+ DLI +V+L PEV
Sbjct: 156 YALA-----TQNDF--IKAKISKAYLE-YQAALKKNNAMDFDDLIMKTVELFKACPEVLD 207
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFR 529
YQ+ ++ I+VDE+QDT+ Q+ L+++LA ++ + +VGDDDQSI+ F GA+I F
Sbjct: 208 SYQERFRYIMVDEYQDTNNAQFELIRLLADKYHNLCVVGDDDQSIYRFRGANIRNILDFE 267
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
K + + I+L +NYRST+ I++AA+++I +N R + K + TD +G + +K+
Sbjct: 268 KVYPDATVIKLEQNYRSTQQILDAANAVIHNNRGR-KDKALWTDEKNGEFVKLKQFDTAY 326
Query: 590 AQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVAFY 648
+ FI I + NG SY A+LYR ++ + F IP++I GV FY
Sbjct: 327 DEAEFIAGDIGKLKRNGK---LSYDECAVLYRTNAQSRLIEERFVHEGIPYDIVGGVNFY 383
Query: 649 RKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISA 708
++ ++ ++A L+T G DD +R+ + ++ ID++ + RK SF A
Sbjct: 384 SRREIKDLLAYLKTIDNGSDDIAVKRIIN---VPKRGIGATTIDYVQNYADERKISFYDA 440
Query: 709 ACD---IFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYL 765
C+ I S + +T R ++ S E + VI +V M
Sbjct: 441 LCEADQIMAVSRSAGKLKDFVTMIRAFRTKMKTYS----LEDLLKDVIDTVGYM------ 490
Query: 766 LEQRAVVDFDGGKLLNEDNDLRSVLQYLL------ADVTDFLSTKFTAAKEEGNVDQDK- 818
N LR++ + A D L +K + +E V+Q
Sbjct: 491 ------------------NYLRTLDEDDDSEDNDRAQNVDELISKIASYEENEEVEQPTL 532
Query: 819 KGCIN--VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
G + L A ID I E DNE V L T+H +KGLE++ V++A E
Sbjct: 533 SGFLEEVALVADIDRIGE-----------DNE-KVLLMTLHSAKGLEFEHVYLAGMEEGV 580
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLK 933
P ++ +EEERRL YV +TRA+K L + M+ + SRF+
Sbjct: 581 FPSYMTLQNEDSDP-EGIEEERRLAYVGITRAKKHLTLCAARRRMVRGETMYNRLSRFVT 639
Query: 934 EIPHHL 939
EIP +L
Sbjct: 640 EIPDNL 645
>gi|404494942|ref|YP_006719048.1| ATP-dependent DNA helicase PcrA [Geobacter metallireducens GS-15]
gi|418068155|ref|ZP_12705469.1| UvrD/REP helicase [Geobacter metallireducens RCH3]
gi|78192571|gb|ABB30338.1| ATP-dependent DNA helicase PcrA [Geobacter metallireducens GS-15]
gi|373557491|gb|EHP83903.1| UvrD/REP helicase [Geobacter metallireducens RCH3]
Length = 742
Score = 232 bits (592), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 211/734 (28%), Positives = 326/734 (44%), Gaps = 132/734 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L++LN Q EA PLL++AG GSGK G+ P ILA+TFT
Sbjct: 4 LKNLNPPQKEAVL-HGEGPLLVLAGAGSGKTRVIVHRIAHLICNLGVPPWQILAVTFTNK 62
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+ +VG A I+TFHS + R L S F IY + +
Sbjct: 63 AAGEMRERVERLVGAGEAP--LIATFHSTCARFLRRDIHHLGYDSSFAIYDDKDAEKLLK 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
E + L ++ KR F SF
Sbjct: 121 EVIAGLGLDE----KR---------------------------FPARSFAAA-------- 141
Query: 410 GMDVAKASGKTPAEFRKIGDEIG---AAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
+D K G P E GD G A + Y L+ CNALD+ DL+ +V+LL P
Sbjct: 142 -IDDCKNRGIPPGEI-PTGDYTGEMLARVYGAYQERLKKCNALDFGDLLMLTVRLLEEHP 199
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGF 525
EV Y+D ++ I+VDE+QDT+ +QY L+++LA R + +VGDDDQSI+ + GADI
Sbjct: 200 EVLARYRDKYRWILVDEYQDTNPIQYRLVRLLAGERRNLCVVGDDDQSIYRWRGADIRNI 259
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
F KDF ++L +NYRST+ I+ AA +++ N R + K + ++N G I+ +
Sbjct: 260 LDFEKDFPGVVTVKLEQNYRSTQNILAAAGAVVAKNRGR-KAKTLWSENPAGEAIVYRRL 318
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHG 644
+E + F+ ++ +H G +A+ YR +V + A IP++ + G
Sbjct: 319 SDEREEARFVCREVEKHVRRG----GDLRDVAVFYRTNAQSRVIEDAMVADGIPYHMVGG 374
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH--IDKISTI-- 700
+ FY + V+ I+A L+ + D+ +R+ R I H +DK++ +
Sbjct: 375 MRFYERMEVKDILAYLKVLVNPADEVSLKRIINV--------PARGIGHATVDKVAELAF 426
Query: 701 RKCSFISAACDIFG-AKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANM 759
RK + D F A SG + + +E + L A
Sbjct: 427 RKGIIL---YDAFSEASTSGLLSTGPRGKIAGFMALMEQFAGL--------------AGT 469
Query: 760 VPQKYLLEQRAVVDFDG--GKLLNEDNDLRSVLQYLLADVTDFLST--KFTAAKEEGNVD 815
VP L + ++D G KL E +D + D L + +A EE
Sbjct: 470 VPLSELASR--IIDGTGYAAKLKEERSD----------EAQDRLDNLQELCSAMEEFERT 517
Query: 816 QDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
D+K L AF++ ++ + E +R S TL T+H +KGLE+ +VF+ E
Sbjct: 518 SDEK----TLAAFLEQVALVSDLERGEGKRE----SATLMTLHAAKGLEFPVVFMIGMEE 569
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRF 931
P V + ++EEERRL YV MTRAR++L + + Q+ SRF
Sbjct: 570 KLFPHVRSLDDP-----EAMEEERRLCYVGMTRARERLILTNARRRRLFGQDQVNMSSRF 624
Query: 932 LKEIPHHLREVQAE 945
+ ++P L +++ E
Sbjct: 625 IADVPRDLLDLEDE 638
>gi|417950790|ref|ZP_12593906.1| ATP-dependent DNA helicase Rep [Vibrio splendidus ATCC 33789]
gi|342805894|gb|EGU41139.1| ATP-dependent DNA helicase Rep [Vibrio splendidus ATCC 33789]
Length = 672
Score = 232 bits (592), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 206/737 (27%), Positives = 350/737 (47%), Gaps = 97/737 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQECGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G +GK AK L +STFH+ L + R + L + F ++
Sbjct: 62 EMKERVGQTLGKGEAKGLIVSTFHTMGLTIIRREYKALGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ + DG +RA L ++S++K N
Sbjct: 110 ---DQDQLALLKELTERQI--DGDKDLLRA--------LMSAISNWK----NDMLTPDQA 152
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
A+A G+ F A E Y +++ NALD+ DLI+ V+LL T EV + +
Sbjct: 153 KARAQGEQEQLF--------AFCFEMYQKQMKAYNALDFDDLIALPVQLLKTNQEVRERW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q + ++VDE+QDT+ QY L+++L R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QSRIRYLLVDEYQDTNTSQYELVRLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
+ N + I+L +NYRST I+ AA+ LI +N + K++ ++ G K+ + NE+ +
Sbjct: 265 YPNLRLIKLEQNYRSTSRILRAANILIANNPHVYE-KSLFSEIPDGEKLKVLNAKNEEHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
I +I+ H + Y A+LYR ++ + A + ++P+ I G +F+ +
Sbjct: 324 AERITGEIIAHKF---LNRTEYKDYAVLYRGNHQSRLIEKALMQNRVPYKISGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ +E ++ + + +R S A+
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PRREIGPVTLEKLGSYANMRGKSLFEAS- 436
Query: 711 DIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRA 770
F + T L R+ + IS R ++ AV V ++ + +L E A
Sbjct: 437 --FEMGLEQTLTGRGLENLRRFTDWIVRISDNAERGNTVDAVRALVRDINYEDWLYETSA 494
Query: 771 VVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAFI 829
+ + +V+D S + A EG N D+++K L+ +
Sbjct: 495 SP---------------KAAEMRMKNVSDLYS--WIVADLEGDNYDKEEKS----LREVV 533
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
++ R+ R + D+ + V L T+H SKGLE+ V++ E +P H+ +V+E
Sbjct: 534 QRLTLRDMME-RGEDDDDADQVQLMTLHASKGLEFPYVYLMGTEEGILP--HQ--TSVDE 588
Query: 890 KGTSVEEERRLLYVAMTRARKKLFILYVMMDANW-QLLQP--SRFLKEIPHHLREVQAEQ 946
+VEEERRL+YV +TRA+K+L + +L++P SRFL E+PH E ++ +
Sbjct: 589 --GNVEEERRLMYVGITRAQKELTFTKCRERRQFGELIKPTQSRFLDELPHDDVEWESVK 646
Query: 947 SVQDQHENIPEGTAQFT 963
Q E + +G A
Sbjct: 647 KPQSAEERMEKGQAHIA 663
>gi|407069558|ref|ZP_11100396.1| ATP-dependent DNA helicase Rep [Vibrio cyclitrophicus ZF14]
Length = 672
Score = 232 bits (592), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 207/736 (28%), Positives = 351/736 (47%), Gaps = 97/736 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQECGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G +GK +K L +STFH+ L + R + L + F ++
Sbjct: 62 EMKERVGQTLGKNESKGLIVSTFHTMGLTIIRREYKALGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ + DG +RA L ++S++K N
Sbjct: 110 ---DQDQLALLKELTERQI--DGDKDLLRA--------LMSTISNWK----NDMLTPDQA 152
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
A+A G+ F A E Y +++ NALD+ DLI+ V LL T EV + +
Sbjct: 153 KARAQGEQEQLF--------AFCFEMYQKQMKAYNALDFDDLIAMPVLLLKTNQEVRERW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q + ++VDE+QDT+ QY L+++L R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QSRIRYLLVDEYQDTNTSQYELVRLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
+ N + I+L +NYRST I+ AA+ LI +N + K++ ++ G K+ + NE+ +
Sbjct: 265 YPNLRLIKLEQNYRSTSRILRAANILIANNPHVYE-KSLFSEIPDGEKLKVLNAKNEEHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
I +I+ H + Y A+LYR ++ + A + ++P+ I G +F+ +
Sbjct: 324 AERITGEIIAHKF---LNRTDYKDYAVLYRGNHQSRLIEKALMQNRVPYKISGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ +E ++ + + +R S A+
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PRREIGPVTLEKLGSYANMRGKSLFEAS- 436
Query: 711 DIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRA 770
F + T L R+ + IS R ++ AV + V ++ + +L E A
Sbjct: 437 --FEMGLEQTLTGRGLENLRRFGDWIVRISDNAERGNTVEAVRSLVRDINYEDWLYETSA 494
Query: 771 VVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAFI 829
+ + +V+D S + A EG N D+++K L+ +
Sbjct: 495 SP---------------KAAEMRMKNVSDLYS--WIVADLEGDNYDKEEK----TLREVV 533
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
++ R+ R + D+ + V L T+H SKGLE+ VF+ A E +P H+ +V+E
Sbjct: 534 QRLTLRDMME-RGEDDDDADQVQLMTLHASKGLEFPYVFLMGAEEGILP--HQ--TSVDE 588
Query: 890 KGTSVEEERRLLYVAMTRARKKLFILYVMMDANW-QLLQP--SRFLKEIPHHLREVQAEQ 946
+VEEERRL+YV +TRA+K+L + +L++P SRFL E+PH E ++ +
Sbjct: 589 --GNVEEERRLMYVGITRAQKELTFTKCRERRQYGELIKPTQSRFLDELPHDDVEWESVK 646
Query: 947 SVQDQHENIPEGTAQF 962
Q E + +G A
Sbjct: 647 KPQSAEERMEKGQAHI 662
>gi|68536650|ref|YP_251355.1| ATP-dependent DNA helicase II [Corynebacterium jeikeium K411]
gi|68264249|emb|CAI37737.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium
K411]
Length = 830
Score = 232 bits (592), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 206/757 (27%), Positives = 346/757 (45%), Gaps = 118/757 (15%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTT 288
K L+ LN QQ +A M +PLLIVAG GSGK G++P ILA+TFT
Sbjct: 12 KLLEGLNPQQRQA-VEHMGSPLLIVAGAGSGKTSVLTRRIAYLLANGVAPWQILAITFTN 70
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRA 347
AA+EMR+R+ +VG A+ + +STFHSF +++ R++A + F IY +R
Sbjct: 71 KAAAEMRERVMDMVGP-QAERMWVSTFHSFCVRVLRANAHLAPGLNTNFSIYDSDDSKRL 129
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFK---LCQYN 404
+ +++K S D+ F +L +S++K +
Sbjct: 130 M-----------TMIIKDASLDL------------KEFSPRGVLNV-ISNWKNELVGPVG 165
Query: 405 KFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLST 464
E D + + ++ + + AA NA+D+ DLI V +L+
Sbjct: 166 ALEEAQRDSNPHTAQIATLYKTYQNRLRAA------------NAVDFDDLIGEVVAILNN 213
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR----ITIVGDDDQSIFSFNGA 520
P+V + Y+ ++ I+VDE+QDT+ QY L+ LA + + +VGD DQSI++F GA
Sbjct: 214 NPDVREHYRRRFRHIMVDEYQDTNHAQYELVAALAGKGKAECELCVVGDADQSIYAFRGA 273
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
I + F +D+ + I L +NYRST+ I+ AA+++I N R + K + TD G I
Sbjct: 274 TIRNIEEFERDYPDAHTILLEQNYRSTQKILSAANAVIDRNQGR-RPKKLWTDLGDGELI 332
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
NE + FI+++I + N SYG I+++YR + + + +P+
Sbjct: 333 GGYVADNEHDEANFIVEQIDDLVDN---EGYSYGDISVMYRTNNASRAIEDVLVRSGMPY 389
Query: 641 N-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIST 699
+ G FY ++ +R I+A L+ D RR+ + + I + +
Sbjct: 390 KVVGGTRFYERREIRDIVAYLKVLDNADDTVALRRIINT---PRRGIGDKAIAQVTVHAE 446
Query: 700 IRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRRE------------- 746
+ F +A D K++G R + + G+ LEM+ L R E
Sbjct: 447 GQGIGFSAALGDAAAGKVAGLSPRGRNSIGK----FLEMMDAL-RAETESMEMTASDGSG 501
Query: 747 ---PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST 803
P + VI++V ++ K LLE+ D G L+ N+L SV + + +
Sbjct: 502 LGLPDLGRVISAVLDVTGYKELLEKSN--DPQDGARLDNLNELVSVGHEFSQESANLKAY 559
Query: 804 KFTAAKEEGNVDQ---------------DKKGCINVLKAFIDYIS-ERETEHFRTQRHDN 847
+ G+ + + + + L+AF++ +S + + D
Sbjct: 560 EEMPGGGAGDAESDSSSDSAESAEAMLAEGEAPLGSLQAFLERVSLVADADQIPA---DE 616
Query: 848 ENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTR 907
++ VTL T+H +KGLE+ +VF+ + + P + T + EERRL YV +TR
Sbjct: 617 QDMVTLMTLHTAKGLEFPVVFLTGWEDGQFPHMRALGDP-----TELAEERRLAYVGITR 671
Query: 908 ARKKLFILYVMMDANWQLL---QPSRFLKEIPHHLRE 941
A+++LF+ + + W PSRFL E+P L E
Sbjct: 672 AKQRLFLTRAITRSGWGAPVNNPPSRFLSEVPEDLME 708
>gi|256420067|ref|YP_003120720.1| UvrD/REP helicase [Chitinophaga pinensis DSM 2588]
gi|256034975|gb|ACU58519.1| UvrD/REP helicase [Chitinophaga pinensis DSM 2588]
Length = 783
Score = 232 bits (592), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 218/741 (29%), Positives = 344/741 (46%), Gaps = 140/741 (18%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFT 287
+ YL LN+QQ A ++ PL+IVAG GSGK G+ NIL++TFT
Sbjct: 3 ANYLDELNEQQ-RLAVAHINGPLMIVAGAGSGKTKVLTTRIAHLMRNGVDAFNILSLTFT 61
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM++R+ I+G A+ L I TFHS +L R+ A +L ++F IY +
Sbjct: 62 NKAAREMKERVEKILGGTEARNLYIGTFHSVFARLLRAEAHRLGYPNDFTIYDSDDAKS- 120
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
V+K I + D H+ + +L YN+
Sbjct: 121 --------------VLKTIINEQNLDDKHY---KPNLV-----------------YNR-- 144
Query: 408 RDGMDVAKASGKTPAEFR----------KIGDEIGAAILENYNGILRSCNALDYHDLISC 457
+ AK S P E++ + + + + Y A+D+ DL+
Sbjct: 145 ---ISAAKNSLMGPEEYQHDYAVQQEDMRANRPMTGKLYDMYAKRCFKNGAMDFDDLLFK 201
Query: 458 SVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFS 516
+LL +FPEV +YQ +K I++DE+QDT+ QY ++++L A+H I +VGDD QSI+S
Sbjct: 202 MYQLLKSFPEVLHKYQHKFKYIMIDEYQDTNPAQYEIIKLLGAAHENICVVGDDAQSIYS 261
Query: 517 FNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSH 576
F GA I F KD+ + K ++L +NYRST+ I+ A+ +I +N + + KN+ TDN+
Sbjct: 262 FRGATIQNILQFEKDYDDAKVVKLEQNYRSTKSILNVANEVIANNKGQIE-KNLWTDNAD 320
Query: 577 GSKIIIKECHNEDAQCAFIIDKILE-----HASNGPASICSYGSIAILYRRQVSGKVFQT 631
G KI + ++ + F+ D I E H +N AILYR + F+
Sbjct: 321 GEKIKLVRTMTDNEEGKFVADTIAEQKLRNHYAN--------RDFAILYRTNAQSRAFEE 372
Query: 632 AFRERKIPFNIH-GVAFYRKKVVRAIIAMLR-TTLPGCDDGPYRRVFKAFLLLEKEEKKR 689
R + IP+ I G++FY++K ++ IA LR T P E+E KR
Sbjct: 373 NLRRKAIPYRIFGGLSFYQRKEIKDFIAYLRIVTNPQ----------------EEESLKR 416
Query: 690 VIDH----IDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRR 745
+I++ I K +T+ KCS I+ +I + + G TLE I V
Sbjct: 417 IINYPVRGIGK-TTVDKCSVIANDQNITFWNVLERAREFGFKSG-----TLEAIEGFVIM 470
Query: 746 EPSISAVITS-----VANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDF 800
S A++ +A V + L + D L +N +Q LL + +F
Sbjct: 471 IRSFQAMLGKHNAYDIALQVGKSTNLVKELFNDKTTEGLARYEN-----IQELLNSIKEF 525
Query: 801 LSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENS--VTLTTIHQ 858
T E+G + + +K + L+ I +++ + + ++E+S V L TIH
Sbjct: 526 TET----PTEDGELLEAEKSLGSYLQQ-ITLLTDAD-------KGNDEDSDVVKLMTIHA 573
Query: 859 SKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM 918
+KGLE+ +VF E P +G +EEERRL YV +TRA+ +LF+ Y
Sbjct: 574 AKGLEFPVVFSVGLEENLFP-----SGLSINSREELEEERRLFYVVITRAKSRLFLTYAN 628
Query: 919 MDANWQLL---QPSRFLKEIP 936
+ L + SRFL+E+P
Sbjct: 629 SRYRFGQLVNNESSRFLEEMP 649
>gi|294497110|ref|YP_003560810.1| ATP-dependent DNA helicase PcrA [Bacillus megaterium QM B1551]
gi|294347047|gb|ADE67376.1| ATP-dependent DNA helicase PcrA [Bacillus megaterium QM B1551]
Length = 741
Score = 232 bits (591), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 213/721 (29%), Positives = 334/721 (46%), Gaps = 103/721 (14%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFT 287
K L LN QQ EA PLL++AG GSGK ++P NILA+TFT
Sbjct: 7 KLLTGLNPQQQEA-VKTTDGPLLLMAGAGSGKTRVLTHRIAFLMAEKEVAPWNILAITFT 65
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EMR+R+ SIVG A+++ ISTFHS +++ R +++ F I
Sbjct: 66 NKAAREMRERVASIVG-GVAEDIWISTFHSMCVRILRRDIDRIGFNRNFTI--------- 115
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
L +++ V+K I D F L S+SS K
Sbjct: 116 ------LDSTDQLSVIKNILKDQNIDPKKFD---------PRSLLGSISSAK-------- 152
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ + VA+ KT A +E+ + + + Y L+ ALD+ DLI +++L PE
Sbjct: 153 -NELKVAEEFDKTAA---GPYEEVVSKVYKEYEKRLKKNQALDFDDLIMTTIQLFKRVPE 208
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFD 526
V YQ ++ I VDE+QDT+ QY L+++LA+ + +VGD DQSI+ + GADI+
Sbjct: 209 VLTYYQRKFQYIHVDEYQDTNHAQYMLVRLLAARFENVCVVGDSDQSIYRWRGADITNIL 268
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
SF KD+ K I L +NYRST+ I+ AA+ +I +N+ R ++KN+ T+N G KI +
Sbjct: 269 SFEKDYPKAKTILLEQNYRSTKTILAAANGVIANNMNR-KVKNLWTENDEGQKIYHYQAM 327
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGV 645
+E + F+ KI E +G Y AILYR +V + + I + I G+
Sbjct: 328 SEHDEAQFVARKIKEAVDSGKR---KYSDFAILYRTNAQSRVMEEVLLKSNINYTIVGGI 384
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSF 705
FY +K ++ ++A LR DD R+ + ++ +D + + S
Sbjct: 385 KFYDRKEIKDLLAYLRLIANQDDDISLARIVN---VPKRGVGATSVDKVANYGNVHDISI 441
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLE-MISKLVRREPSISAVITSVANMVPQKY 764
A ++ ++G + K L + MIS L + + + SV +V Q
Sbjct: 442 FKALDEVELMGLTG--------KATKALRDFQSMISNLAQMQDYM-----SVTELVEQ-- 486
Query: 765 LLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINV 824
+LE+ + L + + + Q L ++ +FLS T EE + D+
Sbjct: 487 VLERTGYRE-----ALKVEKTIEA--QSRLENIDEFLSV--TKTFEEASEDKS------- 530
Query: 825 LKAFI-DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
L AF+ D + + + + V L T+H +KGLE+ +VF+ E P
Sbjct: 531 LVAFLTDLALVADIDKLDDEEEEENEQVILMTLHSAKGLEFPVVFLMGMEEGVFPHSRSL 590
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD---ANWQLLQPSRFLKEIPHHLR 940
+ +EEERRL YV +TRA ++L++L M + SRF+ EIP L
Sbjct: 591 F-----EDNEMEEERRLAYVGITRAEQELYLLNAQMRTLFGKTNVNPKSRFIGEIPSELV 645
Query: 941 E 941
E
Sbjct: 646 E 646
>gi|384049114|ref|YP_005497131.1| ATP-dependent DNA helicase PcrA [Bacillus megaterium WSH-002]
gi|345446805|gb|AEN91822.1| ATP-dependent DNA helicase PcrA [Bacillus megaterium WSH-002]
Length = 749
Score = 232 bits (591), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 220/760 (28%), Positives = 348/760 (45%), Gaps = 105/760 (13%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFT 287
K L LN QQ EA PLL++AG GSGK ++P NILA+TFT
Sbjct: 15 KLLTGLNPQQQEA-VKTTDGPLLLMAGAGSGKTRVLTHRIAFLMAEKEVAPWNILAITFT 73
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EMR+R+ SIVG A+++ ISTFHS +++ R +++ F I
Sbjct: 74 NKAAREMRERVASIVG-GVAEDIWISTFHSMCVRILRRDIDRIGFNRNFTI--------- 123
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
L +++ V+K I D F L S+SS K
Sbjct: 124 ------LDSTDQLSVIKNILKDQNIDPKKFD---------PRSLLGSISSAK-------- 160
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ + VA+ KT A +E+ + + + Y L+ ALD+ DLI +++L PE
Sbjct: 161 -NELKVAEEFDKTAA---GPYEEVVSKVYKEYEKRLKKNQALDFDDLIMTTIQLFKRVPE 216
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFD 526
V YQ ++ I VDE+QDT+ QY L+++LA+ + +VGD DQSI+ + GADI+
Sbjct: 217 VLTYYQRKFQYIHVDEYQDTNHAQYMLVRLLAARFENVCVVGDSDQSIYRWRGADITNIL 276
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
SF KD+ K I L +NYRST+ I+ AA+ +I +N+ R ++KN+ T+N G KI +
Sbjct: 277 SFEKDYPKAKTILLEQNYRSTKTILAAANGVIANNMNR-KVKNLWTENDEGQKIYHYQAM 335
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGV 645
+E + F+ KI E +G Y AILYR +V + + I + I G+
Sbjct: 336 SEHDEAQFVARKIKEAVDSGKR---KYSDFAILYRTNAQSRVMEEVLLKSNINYTIVGGI 392
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSF 705
FY +K ++ ++A LR DD R+ + ++ +D + + S
Sbjct: 393 KFYDRKEIKDLLAYLRLIANQDDDISLARIVN---VPKRGVGATSVDKVANYGNVHDISI 449
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLE-MISKLVRREPSISAVITSVANMVPQKY 764
A ++ ++G + K L + MIS L + + + SV +V Q
Sbjct: 450 FKALDEVELMGLTG--------KATKALRDFQSMISNLAQMQDYM-----SVTELVEQ-- 494
Query: 765 LLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINV 824
+LE+ + L + + + Q L ++ +FLS T EE + D+
Sbjct: 495 VLERTGYRE-----ALKVEKTIEA--QSRLENIDEFLSV--TKTFEEASEDKS------- 538
Query: 825 LKAFI-DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
L AF+ D + + + + V L T+H +KGLE+ +VF+ E P
Sbjct: 539 LVAFLTDLALVADIDKLDDEEEEENEQVILMTLHSAKGLEFPVVFLMGMEEGVFPHSRSL 598
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD---ANWQLLQPSRFLKEIPHHLR 940
+ +EEERRL YV +TRA ++L++L M + SRF+ EIP L
Sbjct: 599 F-----EDNEMEEERRLAYVGITRAEQELYLLNAQMRTLFGKTNVNPKSRFIGEIPSEL- 652
Query: 941 EVQAEQSVQDQHENIPEGTAQFTINLPREENCCETDLVST 980
V++ + G++ R+ +T LVST
Sbjct: 653 -VESLNETMRKPAAGRSGSSASPFAARRQAAVAKTKLVST 691
>gi|415886137|ref|ZP_11547960.1| PcrA [Bacillus methanolicus MGA3]
gi|387588790|gb|EIJ81111.1| PcrA [Bacillus methanolicus MGA3]
Length = 734
Score = 232 bits (591), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 224/745 (30%), Positives = 344/745 (46%), Gaps = 120/745 (16%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFT 287
K L LN QQ + A PLLI+AG GSGK G++P NILA+TFT
Sbjct: 7 KLLSGLNPQQ-QKAVKATDGPLLIMAGAGSGKTRVLTHRIAYLMVEKGVNPYNILAITFT 65
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM++RI +++G A +E+ ISTFHS +++ R +++ F I Q+
Sbjct: 66 NKAAREMKERIQNLIGGA-GEEIWISTFHSMCVRILRRDIDRIGFNRNFTILDATDQQSV 124
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
I + IL K I G S+SS
Sbjct: 125 I---------KGILKDKNIDPKKSDPRAILG---------------SISS---------- 150
Query: 408 RDGMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
AK P EF K +++ + I Y LR ALD+ DLI +++L
Sbjct: 151 ------AKNELIDPEEFSKTAGGYYEQVVSDIYTEYQKRLRKNQALDFDDLIMTTIQLFK 204
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADI 522
PEV + YQ ++ I VDE+QDT+ QY L+++LA+ + +VGD DQSI+ + GADI
Sbjct: 205 RVPEVLEYYQRKFQYIHVDEYQDTNKAQYMLVKMLAARFKNLCVVGDSDQSIYRWRGADI 264
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
+ SF KD+ N + I L +NYRST+ I+ AA+ +I +NV R + KN+ T+N+ G+KI+
Sbjct: 265 ANILSFEKDYPNAQVILLEQNYRSTKRILLAANEVIANNVNR-KPKNLWTENAEGNKIVY 323
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI 642
+E A+ F+ KI E +G + IAILYR +V + + I ++I
Sbjct: 324 YRAVSEQAEAQFVAGKIKEMVESGKRRLS---DIAILYRTNAQSRVMEEVLLKSNIEYSI 380
Query: 643 -HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
G+ FY +K ++ I++ LR DD +RV KR I S+I
Sbjct: 381 VGGIKFYDRKEIKDILSYLRLIANPDDDISLQRVINV--------PKRGIGS----SSID 428
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
K + + + D+ + Q + + + + K+ + I + + M
Sbjct: 429 KIANFALSHDM------------SMYQALEAIDMIGLSPKIAKAAAEFRDFIQNYSRM-- 474
Query: 762 QKYLLEQR---AVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQD 817
Q+YL V+D G + +L + L + Q L ++ +FLS T EE + D+
Sbjct: 475 QEYLSVTELVDEVLDKSGYREMLKAERSLEA--QSRLENLEEFLSV--TKNFEETSEDKS 530
Query: 818 KKGCIN--VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANET 875
+ L A ID + E Q+ D +V L T+H +KGLE+ +VF+ E
Sbjct: 531 LIAFLTDLALVADIDSLDE------DGQKTD---AVVLMTLHSAKGLEFPVVFLIGMEEG 581
Query: 876 EIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD---ANWQLLQPSRFL 932
P +EEERRL YV +TRA ++L+I M ++ SRF+
Sbjct: 582 VFPHSRSLMEE-----AEMEEERRLAYVGITRAEEELYITNAQMRTLFGQTKMNPESRFI 636
Query: 933 KEIPHHLREVQAEQSVQDQHENIPE 957
KEIP + EV + Q +P+
Sbjct: 637 KEIPEDVLEVIHKVQSQASTSGMPK 661
>gi|39998500|ref|NP_954451.1| ATP-dependent DNA helicase PcrA [Geobacter sulfurreducens PCA]
gi|39985447|gb|AAR36801.1| ATP-dependent DNA helicase PcrA [Geobacter sulfurreducens PCA]
Length = 739
Score = 232 bits (591), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 200/724 (27%), Positives = 322/724 (44%), Gaps = 109/724 (15%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFT 287
K L +LN Q AA PLL++AG GSGK G+ ILA+TFT
Sbjct: 2 KLLDNLNPPQ-RAAVLHGEGPLLVLAGAGSGKTRVIVHRIAHLIRERGVPARQILAVTFT 60
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EMR+R+ +VG I+TFHS ++ R L S F IY +
Sbjct: 61 NKAAGEMRERVEKLVGGEVP---LIATFHSTCARILRREIHHLGYDSSFAIYDDKDSGKL 117
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
+ E + L ++ KR L S+ C+
Sbjct: 118 LKEVMAGLGLDE----KRFPATSLA-----------------------SAIDDCKNRGLA 150
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ + +G E+ + Y L+ CNALD+ DLI +V+L P
Sbjct: 151 PEDLPADTFTG-----------EVVGRVYAAYQERLKKCNALDFGDLIMLTVRLFEEHPV 199
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFD 526
V + Y+D W+ I+VDE+QDT+ +QY L+++LA H + +VGDDDQSI+ + GADI
Sbjct: 200 VLERYRDQWRWILVDEYQDTNPIQYRLVRLLAGEHRNLCVVGDDDQSIYRWRGADIRNIL 259
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
F KDF I+L +NYRSTR I+ AA +++ N R + K + ++N G I+ +
Sbjct: 260 DFEKDFPGVTTIKLEQNYRSTRNILAAAGAVVARNRGR-KAKTLWSENPPGDPIVYRRLA 318
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
+E + F+ +I + G +A+ YR +V + A IP++ + G+
Sbjct: 319 DERDEARFVCREIERYVRRG----GDLRDVAVFYRTNAQSRVVEDALVADGIPYHMVGGM 374
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSF 705
FY + V+ ++A LR D+ +R+ + + +D I +++ R +
Sbjct: 375 RFYERMEVKDVLAYLRVLANPADEVSLKRIIN---VPARGIGPGTVDKISELAVRRGITV 431
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYL 765
+ D G +G S +G+ M R+ A +T+ +
Sbjct: 432 L----DALGEAATGGLL-SSAPRGKVAAFAAVMERFFALRDQLPLAELTT--------RI 478
Query: 766 LEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVL 825
+E+ D + +E D + LQ L+A + +F T D++G L
Sbjct: 479 IEESGYADRLRQERTDEAADRLANLQELVAAMEEFERT------------SDERG----L 522
Query: 826 KAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFN 884
F++ ++ + E T R S TL T+H +KGLE+ +VF+ E P V +
Sbjct: 523 APFLEQVALVSDLERSGTGRE----SATLMTLHAAKGLEFPMVFMIGMEEKLFPHVRSLD 578
Query: 885 GAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHHLRE 941
++EEERRL YV MTRAR++L + + Q+ PSRF+ +IP +L +
Sbjct: 579 DP-----EAMEEERRLCYVGMTRARERLCLTNARRRRIFGQDQVNMPSRFIADIPRNLLD 633
Query: 942 VQAE 945
++ E
Sbjct: 634 LEDE 637
>gi|339479103|gb|ABE95568.1| ATP-dependent DNA helicase pcrA [Bifidobacterium breve UCC2003]
Length = 891
Score = 232 bits (591), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 209/736 (28%), Positives = 326/736 (44%), Gaps = 113/736 (15%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN QQ EA LLI AG GSGK G PS ILA+TFT AA+
Sbjct: 19 LNPQQAEA-VQYRGQALLIGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTNKAAA 77
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EMR+R+GS++G A+ + +STFHS +++ R + + S F IY R V
Sbjct: 78 EMRERLGSLIGP-VAQRMWVSTFHSACVRILRRDGKSIGLKSGFSIYDSADSERL----V 132
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+++ E L +KR + + GH ++ +L L F
Sbjct: 133 KIIATEFNLDIKRYTPRSIL--GHISDLKNNLTGWKENLAVHAPDF-------------- 176
Query: 413 VAKASGKTPAEFRKIGD--EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
G+ +F +GD I A I Y L NA+D+ DLI +V+LL T P V +
Sbjct: 177 ---TPGQRGYQFGTVGDLEAIYAVIYAEYEHRLALANAVDFDDLIGRTVELLRTDPAVAE 233
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR------------------ITIVGDDDQ 512
Y ++ I+VDE+QDT+ QY L++ LA + IT+VGD DQ
Sbjct: 234 YYHHRFRYILVDEYQDTNHAQYVLVRELAGVDTGEKAIPGSPNAGKSGPAWITVVGDSDQ 293
Query: 513 SIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQT 572
SI++F GADI F +DF N K I L +NYRST+ I++AA+++I +N R + K + T
Sbjct: 294 SIYAFRGADIRNIQDFEQDFPNAKTIMLEQNYRSTQTILDAANAVISNNEGR-KPKKLWT 352
Query: 573 DNSHGSKIIIKECHNEDAQCAFIIDKILE-HASNGPASICSYGSIAILYRRQVSGKVFQT 631
G I+ N + ++ +I HA +Y +AI+YR + +
Sbjct: 353 ALGKGEPIVGYAADNAQQEAQWVATEIARLHAEED----IAYSDMAIMYRANAQSRSLEE 408
Query: 632 AFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV 690
A +P+ + G FY ++ ++ +A L+ + DD RR+ K+ +
Sbjct: 409 ALINAGLPYQLVGGTKFYERREIKDALAYLQALVNPDDDVNLRRILNV-------PKRGL 461
Query: 691 IDHIDKI----STIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRRE 746
D + I + R SF A + + T +QL R ++ L ++ +
Sbjct: 462 GDRAEGILLAYARERGTSFFYALMHLDEIQDVPTRTATQLKAFRDLMGELSQFTRAHDAK 521
Query: 747 PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFT 806
P S ++ V + LE+ VD L + L+S T
Sbjct: 522 P--SEIVAEVLEKSGLRAELEKS--VDPQDASRLENLSQLQS-----------------T 560
Query: 807 AAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDI 866
AA+ E N L AF++ + ++ VTL T+H +KGLE+ +
Sbjct: 561 AAEFEQNTPD------ATLSAFLETTALVADSDQLPGEAEDSGKVTLMTLHTAKGLEYPV 614
Query: 867 VFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQL- 925
VF+ + P E T ++EERRL YV +TRA+++L++ + + W
Sbjct: 615 VFLTGMEQGTFPHSRSM-----EDTTELQEERRLAYVGITRAKRRLYVTRAAVRSQWGQA 669
Query: 926 --LQPSRFLKEIPHHL 939
+ PS+FL EIP+ L
Sbjct: 670 ADMMPSQFLDEIPYSL 685
>gi|306825147|ref|ZP_07458489.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. oral taxon 071
str. 73H25AP]
gi|304432583|gb|EFM35557.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. oral taxon 071
str. 73H25AP]
Length = 763
Score = 232 bits (591), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 215/732 (29%), Positives = 339/732 (46%), Gaps = 121/732 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R + ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYGL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +II ++E
Sbjct: 266 EKDYPNAKVVLLEENYRSTKTILQAANDVIKNNKNR-RPKNLWTQNADGEQIIYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+ I E G + + A+LYR + + A + IP+ + G F
Sbjct: 325 QDEAVFVAKTIDEL---GRSQNFLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRK 702
Y +K +R IIA L D+ + R+ E KR ++ I + ++
Sbjct: 382 YSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANMQD 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ +I + I G +S +L E + +L +I+ ++ +V
Sbjct: 434 MSMLDASANIMLSGIKGKAAQSIWDFANMILDLREQLDQL-----TITELVEAV------ 482
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
LE+ VD +LN L S + + ++ +FLS T ++ Q+++ +
Sbjct: 483 ---LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSV--TKNFDDNPDSQEEETGL 530
Query: 823 NVLKAFID---YISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
+ L F++ I++ +T T + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 531 DKLSRFLNDLALIADTDTGSQET------SEVTLMTLHAAKGLEFPVVFIIGMEENVFPL 584
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFL 932
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 585 SR-----AAEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFI 635
Query: 933 KEIPHHLREVQA 944
EI L E Q
Sbjct: 636 NEISSDLLEYQG 647
>gi|407276051|ref|ZP_11104521.1| UvrD/REP helicase [Rhodococcus sp. P14]
Length = 795
Score = 232 bits (591), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 211/748 (28%), Positives = 326/748 (43%), Gaps = 113/748 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ LN QQ EA +PLLIVAG GSGK ++P ILA+TFT
Sbjct: 10 LEGLNPQQREAVT-HTGSPLLIVAGAGSGKTAVLTRRIAYLLGERRVTPGQILAITFTNK 68
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLE-RTSEFLIYGHGQQRRAI 348
AA+EMR+R+ +VG A + +STFHS +++ R+ + L S F IY RR +
Sbjct: 69 AAAEMRERVAHLVGP-RANSMWVSTFHSSCVRILRAQSALLSGMNSNFTIYDADDSRRLL 127
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
+ L+ L VKR S +L T H ++ L +
Sbjct: 128 TMIAKDLD----LDVKRYSARLLAT--HISNLKNELIGPEEAAAAADREAADLP------ 175
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
I A + +Y LR+ NA D+ DLI +V LL P V
Sbjct: 176 ---------------------RIVATVYAHYQQRLRAANAFDFDDLIGETVALLQAHPPV 214
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILA------------SHNRITIVGDDDQSIFS 516
+ Y+ ++ ++VDE+QDT+ QY L++ L + + +VGD DQSI++
Sbjct: 215 AEYYRRRFRHVLVDEYQDTNHAQYVLVRTLVGGADDTVSDDAVAPAELCVVGDADQSIYA 274
Query: 517 FNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSH 576
F GA I + F +D+ + I L +NYRST+ I+ AA+++I N R + K + TD+
Sbjct: 275 FRGATIRNIEEFERDYPEARTILLEQNYRSTQTILSAANAVIARNTGRRE-KRLWTDSGA 333
Query: 577 GSKIIIKECHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
G I NE + F+ ID++++ A + IA+ YR S + + F
Sbjct: 334 GEPITGYVADNEHDEAQFVAAEIDRLVD------AGDAKFADIAVFYRTNNSSRALEDVF 387
Query: 634 RERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID 692
+P+ + GV FY +K VR ++A LR D RR+ ++ + D
Sbjct: 388 IRHGVPYRVVGGVRFYERKEVRDLVAYLRVLANPDDTVSLRRILNT-------PRRGIGD 440
Query: 693 HIDKISTIRK----CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREP- 747
+ + F A D + RSQ V L E+ + L +
Sbjct: 441 RAEACVAVHAERTGVGFGRALRDAAEGTVPLLNSRSQKAVAAFVDLMDELRAMLTETDAD 500
Query: 748 -----SISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLS 802
I ++ +V + Y E A D G L+ N+L SV + +D +
Sbjct: 501 GNDLVDIGDIVEAVLDRT--GYRAELEASDDPQDGTRLDNLNELVSVAREFSSDARNAAG 558
Query: 803 TKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGL 862
+ EG + + G L AF++ +S + D VTL T+H +KGL
Sbjct: 559 LEDEREVPEG---EPEPGS---LAAFLERVSLVADADQIPEEGD--GVVTLMTLHTAKGL 610
Query: 863 EWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDAN 922
E+ +VFV + + P + + EERRL YV +TRAR +L++ ++ +
Sbjct: 611 EFPVVFVTGWEDGQFPHMRALGDP-----AELSEERRLAYVGLTRARHRLYLSRAVLRSA 665
Query: 923 WQLLQP-----SRFLKEIPHHLREVQAE 945
W QP SRFL+EIP L E + E
Sbjct: 666 WG--QPVTNPESRFLQEIPQELVEWRRE 691
>gi|118587527|ref|ZP_01544951.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni ATCC BAA-1163]
gi|421186096|ref|ZP_15643491.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni AWRIB418]
gi|118431978|gb|EAV38720.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni ATCC BAA-1163]
gi|399967740|gb|EJO02206.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni AWRIB418]
Length = 748
Score = 232 bits (591), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 204/724 (28%), Positives = 340/724 (46%), Gaps = 111/724 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L LND+Q EA PLLI+AG GSGK + P +ILA+TFT
Sbjct: 5 LTGLNDKQKEAVLT-TEGPLLIMAGAGSGKTRVLTHRVAYLVKEKHVDPWSILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++RI +V + A+ + +STFH+ S ++ R +K+ T+ F I QR
Sbjct: 64 AAREMKERIAGLVDEEDARSIWVSTFHALSARILRRDVDKIGFTTSFSILDSSGQR---- 119
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++K + D+ + + S+S+FK N +
Sbjct: 120 -----------TLMKHVLNDLNYDSNQYD---------PKSILASISNFK----NALQTP 155
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ AK + KTP DE + + Y L ++D+ DLI +++L P+V
Sbjct: 156 --NDAKTAAKTPF------DEAVSESYDLYERRLTQSQSMDFDDLIMRTIQLFKQAPDVL 207
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN----RITIVGDDDQSIFSFNGADISGF 525
YQ +K I VDE+QDT+ QY L+++LA+ + + +VGD DQSI+ + GAD++
Sbjct: 208 HYYQHKFKYIHVDEYQDTNGAQYKLVEMLAAGDFGSRNLAVVGDSDQSIYGWRGADMNNI 267
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
+F KDF K + L +NYRST+ I+ AA+ +IQ+N++R + KN+ T+N G+ I
Sbjct: 268 LNFEKDFPGAKTVLLEQNYRSTKHILMAANQVIQNNIER-KPKNLWTNNQDGNLIHYYRA 326
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHG 644
+E + +++ KI E G S AIL+R ++F+ F KI + + G
Sbjct: 327 QSESDEAHYVLTKIQEGVKKG----RSLNDFAILFRTNAQSRIFEQVFNSNKIQYTMVGG 382
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIRK 702
F+ +K ++ I+A L+ T +D + R+ E KR I I+K+ +
Sbjct: 383 TRFFERKEIQDIVAYLQLTANLDNDTAFERIVN--------EPKRSIGSSSIEKLRSFAA 434
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
+S I + + RK +++ S + S +T +AN +
Sbjct: 435 KKGLSLMKSIVVLDDESRLSKKAQSNFRKFAQMIQVFS-----DQSHFLSLTELANEIFD 489
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
+ + ++ V + +DL S Q + ++ +FLS + + + D++
Sbjct: 490 QTGIREQYV----------KKDDLES--QSRVENLDEFLS---QTKQFDQDYDEEASETN 534
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
N L +D++ + ++ VTL T+H +KGLE+ +VF+ E P
Sbjct: 535 NPL---VDFLGQTALVSDLDSYDESAGQVTLMTVHAAKGLEFPVVFIVGLEEGIFPSAR- 590
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLF-------ILYVMMDANWQLLQPSRFLKEI 935
A+ E+ +EEERRL YVA+TRA+++L+ +LY +N +PS FL EI
Sbjct: 591 ---AMMER-DGLEEERRLAYVAITRAQEELYLTNAFGRLLYGRAQSN----EPSMFLDEI 642
Query: 936 PHHL 939
L
Sbjct: 643 DDSL 646
>gi|297528689|ref|YP_003669964.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. C56-T3]
gi|297251941|gb|ADI25387.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. C56-T3]
Length = 724
Score = 232 bits (591), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 220/733 (30%), Positives = 336/733 (45%), Gaps = 126/733 (17%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFT 287
K L LN +Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 7 KLLAHLNKEQQEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKQVAPWNILAITFT 65
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM++R+ +++G A A+++ ISTFHS +++ R +++ F I
Sbjct: 66 NKAAREMKERVQALLGGA-AEDVWISTFHSMCVRMLRRDIDRIGINRNFSI--------- 115
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
L +++ V+K I D F +R L ++
Sbjct: 116 ------LDPTDQLSVIKAILKDKNIDPKKFE-LRTILATISG------------------ 150
Query: 408 RDGMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
AK TP +F K ++I + + Y L ++LD+ DLI ++ L
Sbjct: 151 ------AKNDLLTPEQFAKRASTYYEKIVGDVYQEYQQRLLRNHSLDFDDLIMTTIHLFD 204
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADI 522
P+V Q YQ ++ I +DE+QDT+ QY+L++ LA I VGD DQSI+ + GADI
Sbjct: 205 RVPDVLQYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQNICAVGDADQSIYRWRGADI 264
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
SF +D+ N K I L +NYRST+ I++AA+ +I HNV R + K + T+N G I+
Sbjct: 265 RNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIAHNVNR-KPKRLWTENPEGKPIVY 323
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI 642
E NE + F+ +I E +G Y A+LYR +V + F + IP+ I
Sbjct: 324 YEAMNEVDEAQFVARRIQEAVESGER---RYRDFAVLYRTNAQSRVIEEMFLKANIPYQI 380
Query: 643 -HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
G+ FY +K ++ I+A LR DD R+ + ++ ID + + +
Sbjct: 381 VGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIIN---VPKRGIGASTIDKLVRYAAEH 437
Query: 702 KCSFISAACDI----FGAKISGTFK--RSQLTQGRKVLLTLEMISKLVRREPSISAVITS 755
+ S A ++ F K +G R QL Q T
Sbjct: 438 ELSLFEALGELEMIGFSTKTAGALAAFRGQLEQW------------------------TQ 473
Query: 756 VANMVPQKYLLEQRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
+ VP L+E+ V+D G + +L + + + Q L ++ +FLS K NV
Sbjct: 474 LQEYVPVTELVEE--VLDQSGYREMLKAERTIEA--QSRLENLDEFLSV----TKHFENV 525
Query: 815 DQDKKGCINVLKAFID---YISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAK 871
DK L AF+ IS+ + E T + ++V T+H +KGLE+ +VF+
Sbjct: 526 SDDKS-----LVAFLTDLALISDLD-ELNGTDQAAEGDAVVFMTLHAAKGLEFPVVFLIG 579
Query: 872 ANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD---ANWQLLQP 928
E P + +EEERRL YV +TRA ++L + M N Q+ +P
Sbjct: 580 MEEGIFPHLRSLENE-----DEMEEERRLAYVGITRAEEELVLTNAQMRTLFGNIQMNRP 634
Query: 929 SRFLKEIPHHLRE 941
SRFL EIP HL E
Sbjct: 635 SRFLDEIPAHLLE 647
>gi|311029280|ref|ZP_07707370.1| ATP-dependent DNA helicase PcrA [Bacillus sp. m3-13]
Length = 767
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 217/725 (29%), Positives = 337/725 (46%), Gaps = 110/725 (15%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFT 287
+ L+ LN Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 7 RLLEGLNPMQKEA-VKKTDGPLLIMAGAGSGKTKVLTHRIAYLMAEKQVAPWNILAITFT 65
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM++R+ ++G A A+++ ISTFHS +++ R +++ F I
Sbjct: 66 NKAAREMKERVEKLLGPA-AEDIWISTFHSMCVRILRRDIDRIGMNRNFTI--------- 115
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
L +++ V+K I D F + ++SS
Sbjct: 116 ------LDTTDQLSVIKNILKDRNIDPKKFE---------PRTILGTISS---------- 150
Query: 408 RDGMDVAKASGKTPAEFRK--IG--DEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
AK P ++ K +G ++ A I +Y L+ ALD+ DLI ++ L
Sbjct: 151 ------AKNELMNPEQYAKQPLGPYEQQVAEIYTDYQKRLKKNQALDFDDLIMTTIHLFK 204
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADI 522
PEV + YQ ++ I VDE+QDT+ QY+L+ +LA + +VGD DQSI+ + GADI
Sbjct: 205 RVPEVLEYYQRKFQYIHVDEYQDTNRAQYTLVNLLADRLKNLCVVGDSDQSIYRWRGADI 264
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
+ SF KD+ N + + L +NYRST+ I+EAA+ +I +N+ R + KN+ T+N G KII
Sbjct: 265 ANILSFEKDYPNAEVVLLEQNYRSTKRILEAANRVIDNNIGRKK-KNLWTENDEGQKIIH 323
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI 642
+ +E ++ F++ K+ E P+ + G AILYR +V + I + I
Sbjct: 324 YQADSEKSEAQFVVGKMRELMRQNPSR--TLGDFAILYRTNAQSRVMEEMLLMSNINYTI 381
Query: 643 -HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
G FY +K ++ I+A LR DD +R+ + ++ +D I +T
Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIANPDDDISLQRIVN---VPKRGIGATTVDKIANYATQH 438
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
S +A ++ +SG SQL + R +I V+ + I SV +V
Sbjct: 439 DISIYTALAEVDLIGVSGR-ATSQLKEFRS------LIEGYVQMQEYI-----SVTELVE 486
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
+ +LE+ + +L D + S Q L ++ +FLS T EE D+
Sbjct: 487 E--VLEKSGYRE-----MLKADKTIES--QSRLENIDEFLSV--TKNFEEKYDDKSLVAF 535
Query: 822 IN--VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
+ L A ID + E + + V L T+H +KGLE+ +VF+ E P
Sbjct: 536 LTDLALVADIDKLDEEDPAQ--------QEGVILMTLHAAKGLEFPVVFLIGMEEGVFPH 587
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD---ANWQLLQPSRFLKEIP 936
+EEERRL YV +TRA ++LFI M + PSRF+KEIP
Sbjct: 588 SRSLFEE-----AEMEEERRLAYVGITRAEEQLFITNAQMRTLFGRTNINPPSRFIKEIP 642
Query: 937 HHLRE 941
L E
Sbjct: 643 EELLE 647
>gi|409913852|ref|YP_006892317.1| ATP-dependent DNA helicase PcrA [Geobacter sulfurreducens KN400]
gi|298507445|gb|ADI86168.1| ATP-dependent DNA helicase PcrA [Geobacter sulfurreducens KN400]
Length = 739
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 200/724 (27%), Positives = 322/724 (44%), Gaps = 109/724 (15%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFT 287
K L +LN Q AA PLL++AG GSGK G+ ILA+TFT
Sbjct: 2 KLLDNLNPPQ-RAAVLHGEGPLLVLAGAGSGKTRVIVHRIAHLIRERGVPARQILAVTFT 60
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EMR+R+ +VG I+TFHS ++ R L S F IY +
Sbjct: 61 NKAAGEMRERVEKLVGGEVP---LIATFHSTCARILRREIHHLGYDSSFAIYDDKDSGKL 117
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
+ E + L ++ KR L S+ C+
Sbjct: 118 LKEVMAGLGLDE----KRFPATSLA-----------------------SAIDDCKNRGLA 150
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ + +G E+ + Y L+ CNALD+ DLI +V+L P
Sbjct: 151 PEDLPADTFTG-----------EVVGRVYAAYQERLKKCNALDFGDLIMLTVRLFEEHPV 199
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFD 526
V + Y+D W+ I+VDE+QDT+ +QY L+++LA H + +VGDDDQSI+ + GADI
Sbjct: 200 VLERYRDQWRWILVDEYQDTNPIQYRLVRLLAGEHRNLCVVGDDDQSIYRWRGADIRNIL 259
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
F KDF I+L +NYRSTR I+ AA +++ N R + K + ++N G I+ +
Sbjct: 260 DFEKDFPGVTTIKLEQNYRSTRNILAAAGAVVARNRGR-KAKTLWSENPPGDPIVYRRLA 318
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
+E + F+ +I + G +A+ YR +V + A IP++ + G+
Sbjct: 319 DERDEARFVCREIERYVRRG----GDLRDVAVFYRTNAQSRVVEDALVADGIPYHMVGGM 374
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSF 705
FY + V+ ++A LR D+ +R+ + + +D I +++ R +
Sbjct: 375 RFYERMEVKDVLAYLRVLANPADEVSLKRIIN---VPARGIGPGTVDKISELAVRRGITI 431
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYL 765
+ D G +G S +G+ M R+ A +T+ +
Sbjct: 432 L----DALGEAATGGLL-SSAPRGKVAAFAAVMERFFALRDQLPLAELTT--------RI 478
Query: 766 LEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVL 825
+E+ D + +E D + LQ L+A + +F T D++G L
Sbjct: 479 IEESGYADRLRQERTDEAADRLANLQELVAAMEEFERT------------SDERG----L 522
Query: 826 KAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFN 884
F++ ++ + E T R S TL T+H +KGLE+ +VF+ E P V +
Sbjct: 523 APFLEQVALVSDLERSGTGRE----SATLMTLHAAKGLEFPMVFMIGMEEKLFPHVRSLD 578
Query: 885 GAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHHLRE 941
++EEERRL YV MTRAR++L + + Q+ PSRF+ +IP +L +
Sbjct: 579 DP-----EAMEEERRLCYVGMTRARERLCLTNARRRRIFGQDQVNMPSRFIADIPRNLLD 633
Query: 942 VQAE 945
++ E
Sbjct: 634 LEDE 637
>gi|359429097|ref|ZP_09220125.1| ATP-dependent DNA helicase PcrA [Acinetobacter sp. NBRC 100985]
gi|358235678|dbj|GAB01664.1| ATP-dependent DNA helicase PcrA [Acinetobacter sp. NBRC 100985]
Length = 679
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 207/722 (28%), Positives = 345/722 (47%), Gaps = 116/722 (16%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LND+QLEA + PLL++AG GSGK GI I AMTFT AA
Sbjct: 7 LNDKQLEA-MKYVQGPLLVLAGAGSGKTSVITRKIAFLVQQCGIPAHRITAMTFTNKAAR 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G ++ + AK L++STFH+F L L R + L + F +I++A
Sbjct: 66 EMKERVGKLLSREEAKGLSVSTFHTFGLNLLRIELKHLPLKNNF----------SILDAD 115
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
KRI D++ D G L A +S +K + +
Sbjct: 116 D---------CKRILMDLMQRDNMSGAESKELI---AKAMKKISDWK---------NDLV 154
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
V + + T + D A + + Y LR+ NA+D+ DLI +LL EV ++
Sbjct: 155 VPEQAHST---CETVEDVQLAHLYQLYERNLRAYNAVDFDDLIVMPTRLLQENAEVRDKW 211
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY+L+++L + T VGDDDQSI+++ GA + D
Sbjct: 212 QNRVRYLLVDEYQDTNTAQYTLVKLLVGVMGQFTAVGDDDQSIYAWRGAKPENMALLKDD 271
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F N K I+L +NYRST I++AA+++I++N K + +D HG I I C N+D +
Sbjct: 272 FHNLKVIKLEQNYRSTSRILKAANAVIENNPHIFD-KKLWSDKGHGETIRIITCLNDDDE 330
Query: 592 CAFIIDKILEHA-SNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYR 649
++ ++ H NG ++ AILYR +V +T R+ +IP+ + G +F+
Sbjct: 331 AERVVKDLITHKLMNGK----NWKDYAILYRGNFQARVLETQLRQMQIPYKLSGGQSFFA 386
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI--DKISTIRK---CS 704
+ ++ +++ LR + DD + R+ KR I + +K+ + S
Sbjct: 387 RAEIKDVMSYLRLIINPEDDSAFLRIINT--------PKRAIGPVTLEKLGLFAQENTLS 438
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK- 763
++A+ D ++S + TQ + + I+ R + V M+ +
Sbjct: 439 LLTASSD---QRLSMVLPKKAATQLHEF---ADFIATFTRELLDDDEPVPKVRQMINEAG 492
Query: 764 ---YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
Y+ EQ A + K+ N ++ L + +Q LL + TD D D+K
Sbjct: 493 YIDYVREQAATPAQEKTKIDNIES-LYTSIQNLL-NRTD---------------DVDEKN 535
Query: 821 CINVLKAFI--DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
+V++ + D + +++ E ++ + V L T+H +KGLE+ V++ E +P
Sbjct: 536 IESVIRKLVLLDMLEQQQEE-------EDTDKVNLLTLHAAKGLEFPYVYMIGLEEELLP 588
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDAN---WQLLQPSRFLKEI 935
H+ N +E ++EEERRL+YV +TRAR+ L I N + + PSRFL E+
Sbjct: 589 --HK-NSIASE---TIEEERRLMYVGITRARQGLTITLAEQRKNGGQMRQMTPSRFLDEL 642
Query: 936 PH 937
P
Sbjct: 643 PQ 644
>gi|84394502|ref|ZP_00993213.1| ATP-dependent DNA helicase Rep [Vibrio splendidus 12B01]
gi|84374879|gb|EAP91815.1| ATP-dependent DNA helicase Rep [Vibrio splendidus 12B01]
Length = 672
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 205/736 (27%), Positives = 351/736 (47%), Gaps = 97/736 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQECGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G +GK +K L +STFH+ L + R + L + F ++
Sbjct: 62 EMKERVGQTLGKGESKGLIVSTFHTMGLTIIRREYKALGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ + DG +R+ L ++S++K N
Sbjct: 110 ---DQDQLALLKELTETQI--DGDKDLLRS--------LMSTISNWK----NDMLTPDQA 152
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
A+A G+ F A E Y +++ NALD+ DLI+ V LL T EV + +
Sbjct: 153 KARAQGEQEQLF--------AFCFEMYQKQMKAYNALDFDDLIAMPVLLLKTNQEVRERW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q + ++VDE+QDT+ QY L+++L R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QSRIRYLLVDEYQDTNTSQYELVRLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
+ N + I+L +NYRST I+ AA+ LI +N + K++ ++ G K+ + NE+ +
Sbjct: 265 YPNLRLIKLEQNYRSTSRILRAANILIANNPHVYE-KSLFSEIPDGEKLKVLNAKNEEHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
I +I+ H + Y A+LYR ++ + A + ++P+ I G +F+ +
Sbjct: 324 AERITGEIIAHKF---LNRTEYKDYAVLYRGNHQSRLIEKALMQNRVPYKISGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ +E ++ + + +R S A+
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PRREIGPVTLEKLGSYANMRGKSLFEAS- 436
Query: 711 DIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRA 770
F + T L R+ + IS R ++ AV + V ++ + +L E
Sbjct: 437 --FEMGLEQTLTGRGLENLRRFSDWIVRISDNAERGNTVEAVRSLVRDINYEDWLYETSP 494
Query: 771 VVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAFI 829
+ + +V+D S + A EG N D+++K L+ +
Sbjct: 495 SP---------------KAAEMRMKNVSDLYS--WIVADLEGDNYDKEEK----TLREVV 533
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
++ R+ R + +D+ + V L T+H SKGLE+ VF+ A E +P H+ +V+E
Sbjct: 534 QRLTLRDMME-RGEDNDDADQVQLMTLHASKGLEFPYVFLMGAEEGILP--HQ--TSVDE 588
Query: 890 KGTSVEEERRLLYVAMTRARKKLFILYVMMDANW-QLLQP--SRFLKEIPHHLREVQAEQ 946
+VEEERRL+YV +TRA+K+L + +L++P SRFL E+PH E ++ +
Sbjct: 589 --GNVEEERRLMYVGITRAQKELTFTKCRERRQYGELIKPTQSRFLDELPHDDVEWESVK 646
Query: 947 SVQDQHENIPEGTAQF 962
Q E + +G A
Sbjct: 647 KPQSAEERMEKGQAHI 662
>gi|337744533|ref|YP_004638695.1| protein PcrA [Paenibacillus mucilaginosus KNP414]
gi|336295722|gb|AEI38825.1| PcrA [Paenibacillus mucilaginosus KNP414]
Length = 733
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 218/737 (29%), Positives = 333/737 (45%), Gaps = 122/737 (16%)
Query: 236 NMPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSN 280
N P + + + LN QQ + A + PLLI+AG GSGK +P +
Sbjct: 3 NQPIDIFQAVNKLNPQQ-KQAVETVEGPLLIMAGAGSGKTRVLTHRIAYLIATRKAAPWS 61
Query: 281 ILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYG 340
ILA+TFT AA EM++R+ S+VG ++ +STFHS +++ R ++ TS F I
Sbjct: 62 ILAITFTNKAAREMQERVSSLVG-PQGGDIWVSTFHSMCVRILRRDISRIGFTSNFSILD 120
Query: 341 HGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKL 400
G Q + +R + E+ + K
Sbjct: 121 SGDQ----LSVIRNIMKEQNIDSK------------------------------------ 140
Query: 401 CQYNKFERDGMDVAKASGK----TPAEF-RKIGD---EIGAAILENYNGILRSCNALDYH 452
KFE + A ++ K TP F RKIGD I A + +Y LR+ N+LD+
Sbjct: 141 ----KFEPKAVQAAISNAKNELQTPEMFERKIGDYFDGIVAKVYSSYQRKLRANNSLDFD 196
Query: 453 DLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDD 511
DLI +++L PEV YQ+ ++ I VDE+QDT+ QY L ++LA H RI +VGD D
Sbjct: 197 DLIMTTIELFKQVPEVLDFYQNKFQYIHVDEYQDTNRAQYMLCRMLADKHKRICVVGDSD 256
Query: 512 QSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQ 571
QSI+ + GADIS F KD+ N I L +NYRST I+ AA+ +I +N R ++KN+
Sbjct: 257 QSIYKWRGADISNILDFEKDYPNATTILLEQNYRSTSNILNAANKVIANNTGR-KVKNLW 315
Query: 572 TDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQT 631
TD + G KI + + +E + FI +I + NG Y AILYR +V +
Sbjct: 316 TDKAEGDKIKVYQADSEHEEGYFITGEIRRNLDNGR----RYKDHAILYRTNAQSRVIEE 371
Query: 632 AFRERKIPFNI-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV 690
+ IP+ I GV FY +K ++ I+A LR DD + RV K+ +
Sbjct: 372 ILIKSDIPYQIVGGVKFYDRKEIKDILAYLRLISNPDDDISFARVVNV-------PKRGI 424
Query: 691 ID-HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSI 749
D +D+ ++ A FG + + ++EM +K
Sbjct: 425 GDTSLDR---------LAGAAAQFGVSLFAMLENVD---------SIEMAAKAKNALADF 466
Query: 750 SAVITSVANMVPQKYLLE-QRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTA 807
+I ++ MV + E +++ G + L +N + S Q L ++ +FLS T
Sbjct: 467 RDMIENLHRMVEYLSVTELTEKMLELSGYRDELRRENTIES--QARLENIDEFLSV--TM 522
Query: 808 AKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIV 867
E+ N D+ + L D + + + V L T+H +KGLE+ +V
Sbjct: 523 DFEKRNEDKSLVSFLTDLALIAD------IDSMNADPEEGKQGVVLMTMHSAKGLEFPVV 576
Query: 868 FVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL- 926
F+ E P H A NE+ YV +TRA ++LF+ M +
Sbjct: 577 FIMGLEEGVFP--HSRAVADNEELEEERRL---AYVGITRAEEQLFLTCARMRTLFGRTA 631
Query: 927 --QPSRFLKEIPHHLRE 941
PSRFL+E+P L E
Sbjct: 632 QNAPSRFLRELPPELLE 648
>gi|406920861|gb|EKD58853.1| hypothetical protein ACD_56C00038G0003 [uncultured bacterium]
Length = 725
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 217/749 (28%), Positives = 346/749 (46%), Gaps = 136/749 (18%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ LN+ Q +A PLLI+AG GSGK + P NILA+TFT
Sbjct: 5 LEGLNENQKKAVIA-ADGPLLIIAGAGSGKTKTLTHRVAYLIKNHHVMPQNILAVTFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKEL------------TISTFHSFSLQLCRSHAEKLERTSEFL 337
AA EMR+RI I+ A TI TFH+ ++ RS E L F
Sbjct: 64 AAGEMRERIVKILYPEAAHNFKYSLYRNNDQLPTIGTFHAICSKILRSEIEALGYAKTFH 123
Query: 338 IYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLF-FSMS 396
I Q+ + + ++ LE + A F A+L S +
Sbjct: 124 IVDDQDQQVLMKKVLKELE-----------------------IDAQQFAPRAILASISKA 160
Query: 397 SFKLCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLIS 456
+L ++F + +A+G +EI A Y L+ N LD+ D+I
Sbjct: 161 KNELMGPHQFAQ------QANGYY--------EEITAKAYSLYQTRLKENNGLDFDDIIM 206
Query: 457 CSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIF 515
+V+L FP+V + YQ+ ++ I+VDE+QDT+ QY L+ +LAS H + +VGDD QSI+
Sbjct: 207 FTVELFKNFPQVLEHYQNLFRFIMVDEYQDTNRAQYLLINLLASKHRNLCVVGDDWQSIY 266
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
F GADI +F KD+ K I L +NYRST+ I++AA +I N+ R K + T+
Sbjct: 267 KFRGADIKNILNFEKDYDEAKVIHLEQNYRSTQVILDAAYGVISKNINRKD-KKLWTEQE 325
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G +I E +E + +I ++I ++++NG + ILYR + + +F
Sbjct: 326 AGKQITSFEAADERDEADYIANEI-KNSANG-----VFKKFVILYRTNAQSRAVEESFLR 379
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
IP+ I G+ FY++K V+ +IA LR D RV E K+ + D
Sbjct: 380 NSIPYRIIGGIKFYQRKEVKDVIAYLRLISNLTDSVSLERVV-------NEPKRNIGD-- 430
Query: 695 DKISTIRKCSFISAACDI------FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPS 748
+T+RK +I+AA + GA S T L++ + E I ++ +P
Sbjct: 431 ---ATVRK--WINAARVLGMSPIEAGATKSLTNSGLPLSKTEAIAKFCEFIMRMKELQPR 485
Query: 749 ISAV--ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFT 806
I+ I V + +L V +G +L SV +TK+
Sbjct: 486 INLADFIEKVFKESGYEQMLSNEGV---EGEPRWENVKELISV------------ATKY- 529
Query: 807 AAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDI 866
D++K+ +VL AF++ ++ ++++V + T+H +KGLE+ +
Sbjct: 530 --------DENKEDYEDVLSAFLEEVA---LASDVDNVDQDQDAVHMMTLHSAKGLEFPV 578
Query: 867 VFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANW 923
VF+ E +P + +EEERRL+YV +TRA++K+++L+ + +
Sbjct: 579 VFIVGLEEGILPHARSLLAY-----SEMEEERRLMYVGLTRAKEKIYLLFTRQRTLFGST 633
Query: 924 QLLQPSRFLKEIPHHLREV----QAEQSV 948
Q+ PSRFL++IP L E +AEQ V
Sbjct: 634 QMNSPSRFLEDIPETLVEKKSYREAEQKV 662
>gi|212638095|ref|YP_002314615.1| ATP-dependent DNA helicase PcrA [Anoxybacillus flavithermus WK1]
gi|212559575|gb|ACJ32630.1| ATP-dependent DNA helicase PcrA [Anoxybacillus flavithermus WK1]
Length = 726
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 227/742 (30%), Positives = 354/742 (47%), Gaps = 111/742 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LN++Q EA PLLI+AG GSGK G++P NILA+TFT
Sbjct: 14 LEGLNEKQKEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKGVAPWNILAITFTNK 72
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ IVGK A+++ ISTFHS +++ R +++ + F I
Sbjct: 73 AAREMKERVERIVGK-QAEDIWISTFHSMCVRILRRDIDRIGIHANFSI----------- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
L +++ V+K I D D RA L ++SS K D
Sbjct: 121 ----LDPTDQLSVLKHILKDR-NIDPKKYDPRA--------LLGAISSAK--------ND 159
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ K + + + K+ A + + Y L +ALD+ DLI +++L PEV
Sbjct: 160 LVTPEKYAEQAANPYEKLV----AEVYQEYQKRLLRNHALDFDDLIMTTIQLFQRVPEVL 215
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ ++ I VDE+QDT+ QY L+ +LA + +VGD DQSI+ + GADIS SF
Sbjct: 216 EYYQRKFQYIHVDEYQDTNRSQYLLVNMLAKRFQNLCVVGDSDQSIYRWRGADISNILSF 275
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K I L +NYRST+ I++AA+++I+HN +R + K + T+NS G ++ E E
Sbjct: 276 EKDYPNAKVILLEQNYRSTKRILQAANAVIEHNTQR-KPKKLWTENSEGHALVYYEAMTE 334
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVAF 647
+ F++ KI E+ G +Y A+LYR +V + + IP+ I G+ F
Sbjct: 335 VDEAQFVVGKIKEYVDAGKR---TYKDFAVLYRTNAQSRVLEEMLLKANIPYKIVGGLKF 391
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y +K ++ I+A LR DD + R+ + ++ ID I ++ + S
Sbjct: 392 YDRKEIKDILAYLRLIANPNDDISFTRIIN---VPKRGIGASTIDKIAAYASSQGISMFD 448
Query: 708 AACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLE 767
A I IS + L Q R+ + + + SV +V
Sbjct: 449 ALGSIEEMGISARIA-APLVQFREQIHHWSQMQHYL-----------SVTELVED----- 491
Query: 768 QRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN--V 824
V+D G + +L E+ L + L ++ +FLS T E+ N D+ +
Sbjct: 492 ---VLDRSGYRDMLREEKTLEA--HSRLENIDEFLSV--TQHFEQVNEDKSLVAFLTDLA 544
Query: 825 LKAFIDYI---SERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
L A ID + SE +T ++V L T+H +KGLE+ +VF+ E P
Sbjct: 545 LVADIDQLDNDSEGQT----------NDAVVLMTLHSAKGLEFPVVFLVGLEEGIFP--- 591
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD---ANWQLLQPSRFLKEIPHH 938
N ++N++ +EEERRL YV +TRA +KLF+ M + PSRF+ EIP
Sbjct: 592 -HNRSLNDE-DEMEEERRLAYVGITRAEEKLFLTRAHMRTLFGQTHVNAPSRFIDEIPEE 649
Query: 939 LREVQAEQSVQDQHENIPEGTA 960
L E A + V+ ++ TA
Sbjct: 650 LIEY-AHKRVKKSSASVRPSTA 670
>gi|169335318|ref|ZP_02862511.1| hypothetical protein ANASTE_01730 [Anaerofustis stercorihominis DSM
17244]
gi|169258056|gb|EDS72022.1| putative ATP-dependent DNA helicase PcrA [Anaerofustis
stercorihominis DSM 17244]
Length = 741
Score = 231 bits (590), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 220/725 (30%), Positives = 329/725 (45%), Gaps = 114/725 (15%)
Query: 245 LQSLNDQQLEAA-CGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTT 288
L LN++Q EA C D PLLI+AG GSGK P ILA+TFT
Sbjct: 4 LSMLNEKQQEAVTCVD--GPLLILAGAGSGKTRTIIHRIAYIIENGYAKPWEILALTFTN 61
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA EMR+RI S+ G ++ + TFHS ++ R L TS F IY +R
Sbjct: 62 KAAGEMRERIDSM-GIPFTSDIWMGTFHSICARILRIEGHNLGFTSNFSIYDDDDTKR-- 118
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGY--MRASLFMMNAMLFFSMSSFKLCQYNKF 406
VVK I D+ +D F +++ + ++ L S L +++ F
Sbjct: 119 -------------VVKSILKDLDISDKEFPVEGVKSQISLLKNNL--ETSDDYLEEHDDF 163
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
E G T A A I Y L S NA+D+ DL+ L + P
Sbjct: 164 E---------GGYTEARI--------AQIYAEYQKRLLSSNAMDFDDLLLNMNILFAKCP 206
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGF 525
EV +Y++ +K I+VDE+QDT+ QY+++ LA H I + GDDDQSI+ + GA I
Sbjct: 207 EVLNKYKNRFKYILVDEYQDTNLSQYAIVSKLAEDHRNICVCGDDDQSIYGWRGASIRNI 266
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
F +DF + IRL +NYR T+ I+ AA+ +I+HN +R K + TDN G KI
Sbjct: 267 LEFEEDFEDAAVIRLEQNYRCTKNILNAANGVIEHNQRRMG-KTLFTDNDEGEKIKYLNA 325
Query: 586 HNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI- 642
+++ + + I +I L P Y IAILYR ++ + R IP+ I
Sbjct: 326 NSDLEESSLISREIFCLNEYHGIP-----YSDIAILYRTNAQSRMLEEGLMRRNIPYQIV 380
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRK 702
G FY + ++ I+A L+ + DD RV KR I + I+
Sbjct: 381 AGTKFYDRMEIKDILAYLKLIVNPQDDLALIRVINT--------PKRGIGPA-SVEKIKD 431
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQG--RKVLLTLEMISKLVRREPSISAVITSVANMV 760
+F+ ++ S L +G ++ L+ + +RR P + ++ V N +
Sbjct: 432 YAFMKGTS---MYEVIKHIDSSPLFKGAIKEKLMNFRDTIEEIRRLPENNGLMDIVINTI 488
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
E GK+ N N L ++ + + A + F + +EE
Sbjct: 489 HLSGYEEM-----LKEGKVENASNRLENLDELVNA------AGDFESNEEE--------- 528
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIHQSKGLEWDIVFVAKANETEIPL 879
N L+AF+ E +D ++S V L T+H +KGLE++IVF+ E P
Sbjct: 529 --NTLEAFL----ENAALVAGVDSYDEDSSKVLLMTLHNAKGLEFNIVFMPGMEENLFPT 582
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
AVNE + +EEERRL YV +TRARK+L++ + + PSRFL E+P
Sbjct: 583 YR----AVNED-SEMEEERRLCYVGITRARKQLYMSSAESRRVYGRNEYRNPSRFLLEVP 637
Query: 937 HHLRE 941
L E
Sbjct: 638 DELIE 642
>gi|417794982|ref|ZP_12442214.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis SK255]
gi|334266238|gb|EGL84720.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis SK255]
Length = 763
Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 212/729 (29%), Positives = 338/729 (46%), Gaps = 115/729 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R + ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYGL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRS--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDVYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ ++E
Sbjct: 266 EKDYPNAKVVLLEENYRSTKTILQAANDVIKNNKNR-RPKNLWTQNADGEQIVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+ I E G + + A+LYR + + A + IP+ + G F
Sbjct: 325 QDEAVFVAKTIDEL---GRSQNFLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRK 702
Y +K +R IIA L D+ + R+ E KR ++ I + +++
Sbjct: 382 YSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANLQE 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ +I + I G +S +L E + +L +I+ ++ +V
Sbjct: 434 ISMLDASANIMLSGIKGKAAQSIWDFANMILDLREKLDQL-----TITELVEAV------ 482
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
LE+ VD +LN L S + + ++ +FLS T ++ Q+++ +
Sbjct: 483 ---LEKTGYVD-----ILNAQATLESKTR--VENIEEFLSV--TKNFDDNPDSQEEETGL 530
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 531 DKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFIIGMEENVFPLSR- 586
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+ EI
Sbjct: 587 ----AAEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFINEI 638
Query: 936 PHHLREVQA 944
L E Q
Sbjct: 639 SSDLLEYQG 647
>gi|319765417|ref|YP_004130918.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y412MC52]
gi|317110283|gb|ADU92775.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y412MC52]
Length = 724
Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 222/738 (30%), Positives = 337/738 (45%), Gaps = 136/738 (18%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFT 287
K L LN +Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 7 KLLAHLNKEQQEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKQVAPWNILAITFT 65
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM++R+ +++G A A+++ ISTFHS +++ R +++ F I
Sbjct: 66 NKAAREMKERVQALLGGA-AEDVWISTFHSMCVRMLRRDIDRIGINRNFSI--------- 115
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
L +++ V+K I D K KFE
Sbjct: 116 ------LDPTDQLSVIKAILKD-----------------------------KNIDPKKFE 140
Query: 408 RDGMDVAKASGK-----TPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCS 458
+ +A SG TP +F K ++I + + Y L ++LD+ DLI +
Sbjct: 141 PRTI-LATISGAKNDLLTPEQFAKRASTYYEKIVGDVYQEYQQRLLRNHSLDFDDLIMTT 199
Query: 459 VKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSF 517
+ L P+V Q YQ ++ I +DE+QDT+ QY+L++ LA I VGD DQSI+ +
Sbjct: 200 IHLFDRVPDVLQYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQNICAVGDADQSIYRW 259
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GADI SF +D+ N K I L +NYRST+ I++AA+ +I HNV R + K + T+N G
Sbjct: 260 RGADIRNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIAHNVNR-KPKRLWTENPEG 318
Query: 578 SKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERK 637
I+ E NE + F+ +I E +G Y A+LYR +V + F +
Sbjct: 319 KPIVYYEAMNEVDEAQFVARRIQEAVESGER---RYRDFAVLYRTNAQSRVIEEMFLKAN 375
Query: 638 IPFNI-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDK 696
IP+ I G+ FY +K ++ I+A LR DD R+ + ++ ID + +
Sbjct: 376 IPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIIN---VPKRGIGASTIDKLVR 432
Query: 697 ISTIRKCSFISAACDI----FGAKISGTFK--RSQLTQGRKVLLTLEMISKLVRREPSIS 750
+ + S A ++ F K +G R QL Q
Sbjct: 433 YAAEHELSLFEALGELEMIGFSTKTAGALAAFRGQLEQW--------------------- 471
Query: 751 AVITSVANMVPQKYLLEQRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAK 809
T + VP L+E+ V+D G + +L + + + Q L ++ +FLS K
Sbjct: 472 ---TQLQEYVPVTELVEE--VLDQSGYREMLKAERTIEA--QSRLENLDEFLSV----TK 520
Query: 810 EEGNVDQDKKGCINVLKAFID---YISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDI 866
NV DK L AF+ IS+ + E T + ++V T+H +KGLE+ +
Sbjct: 521 HFENVSDDKS-----LVAFLTDLALISDLD-ELNGTDQAAEGDAVVFMTLHAAKGLEFPV 574
Query: 867 VFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD---ANW 923
VF+ E P + +EEERRL YV +TRA ++L + M N
Sbjct: 575 VFLIGMEEGIFPHLRSLENE-----DEMEEERRLAYVGITRAEEELVLTNAQMRTLFGNI 629
Query: 924 QLLQPSRFLKEIPHHLRE 941
Q+ +PSRFL EIP HL E
Sbjct: 630 QMNRPSRFLDEIPAHLLE 647
>gi|379718165|ref|YP_005310296.1| protein PcrA [Paenibacillus mucilaginosus 3016]
gi|378566837|gb|AFC27147.1| PcrA [Paenibacillus mucilaginosus 3016]
Length = 771
Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 217/738 (29%), Positives = 335/738 (45%), Gaps = 124/738 (16%)
Query: 236 NMPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSN 280
N P + + + LN QQ + A + PLLI+AG GSGK +P +
Sbjct: 3 NQPIDIFQAVNKLNPQQ-KQAVETVEGPLLIMAGAGSGKTRVLTHRIAYLIATRKAAPWS 61
Query: 281 ILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYG 340
ILA+TFT AA EM++R+ S+VG ++ +STFHS +++ R ++ TS F I
Sbjct: 62 ILAITFTNKAAREMQERVSSLVG-PQGGDIWVSTFHSMCVRILRRDISRIGFTSNFSILD 120
Query: 341 HGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKL 400
G Q + +R + E+ + K
Sbjct: 121 SGDQ----LSVIRNIMKEQNIDSK------------------------------------ 140
Query: 401 CQYNKFERDGMDVAKASGK----TPAEF-RKIGD---EIGAAILENYNGILRSCNALDYH 452
KFE + A ++ K TP F RKIGD I A + +Y LR+ N+LD+
Sbjct: 141 ----KFEPKAVQAAISNAKNELQTPEMFERKIGDYFDGIVAKVYSSYQRKLRANNSLDFD 196
Query: 453 DLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDD 511
DLI +++L PEV YQ+ ++ I VDE+QDT+ QY L ++LA H RI +VGD D
Sbjct: 197 DLIMTTIELFKQVPEVLDFYQNKFQYIHVDEYQDTNRAQYMLCRMLADKHKRICVVGDSD 256
Query: 512 QSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQ 571
QSI+ + GADIS F KD+ N I L +NYRST I+ AA+ +I +N R ++KN+
Sbjct: 257 QSIYKWRGADISNILDFEKDYPNATTILLEQNYRSTSNILNAANKVIANNTGR-KVKNLW 315
Query: 572 TDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQT 631
TD + G KI + + +E + FI +I + NG Y AILYR +V +
Sbjct: 316 TDKAEGDKIKVYQADSEHEEGYFITGEIRRNLDNG----RRYKDHAILYRTNAQSRVIEE 371
Query: 632 AFRERKIPFNI-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV 690
+ IP+ I GV FY +K ++ I+A LR DD + RV K+ +
Sbjct: 372 ILIKSDIPYQIVGGVKFYDRKEIKDILAYLRLISNPDDDISFARVVNV-------PKRGI 424
Query: 691 ID-HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSI 749
D +D+ ++ A FG + + ++EM +K
Sbjct: 425 GDTSLDR---------LAGAAAQFGVSLFAMLENVD---------SIEMAAKAKNALADF 466
Query: 750 SAVITSVANMVPQKYLLE-QRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTA 807
+I ++ MV + E +++ G + L +N + S Q L ++ +FLS
Sbjct: 467 RDMIENLHRMVEYLSVTELTEKMLELSGYRDELRRENTIES--QARLENIDEFLSV---- 520
Query: 808 AKEEGNVDQDKKGCINVLKAFI-DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDI 866
+D +K+ L +F+ D + + + + V L T+H +KGLE+ +
Sbjct: 521 -----TMDFEKRNEDKSLVSFLTDLALIADIDSMNADPEEGKQGVVLMTMHSAKGLEFPV 575
Query: 867 VFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL 926
VF+ E P H A NE+ YV +TRA ++LF+ M +
Sbjct: 576 VFIMGLEEGVFP--HSRAVADNEELEEERRL---AYVGITRAEEQLFLTCARMRTLFGRT 630
Query: 927 ---QPSRFLKEIPHHLRE 941
PSRFL+E+P L E
Sbjct: 631 AQNAPSRFLRELPPELLE 648
>gi|315613237|ref|ZP_07888147.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis ATCC
49296]
gi|315314799|gb|EFU62841.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis ATCC
49296]
Length = 763
Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 212/729 (29%), Positives = 339/729 (46%), Gaps = 115/729 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLL++AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLVMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R + ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYGL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +II ++E
Sbjct: 266 EKDYPNAKVVLLEENYRSTKTILQAANDVIKNNKNR-RPKNLWTQNADGEQIIYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+ I E G + + A+LYR + + A + IP+ + G F
Sbjct: 325 QDEAVFVAKTIDEL---GRSQNFLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRK 702
Y +K +R IIA L D+ + R+ E KR ++ I + +++
Sbjct: 382 YSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANMQE 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ +I + I G +S +L E + +L +I+ ++ +V
Sbjct: 434 MSMLDASANIMLSGIKGKAAQSIWDFANMILDLREQLDQL-----TITELVEAV------ 482
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
LE+ VD +LN L S ++ + ++ +FLS T ++ Q+++ +
Sbjct: 483 ---LEKTGYVD-----ILNAQATLESKVR--VENIEEFLSV--TKNFDDNPDSQEEETGL 530
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 531 DKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFIIGMEENVFPLSR- 586
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+ EI
Sbjct: 587 ----AAEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTSYNRPTRFINEI 638
Query: 936 PHHLREVQA 944
L E Q
Sbjct: 639 SSDLLEYQG 647
>gi|261418602|ref|YP_003252284.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y412MC61]
gi|261375059|gb|ACX77802.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y412MC61]
Length = 725
Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 222/738 (30%), Positives = 337/738 (45%), Gaps = 136/738 (18%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFT 287
K L LN +Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 8 KLLAHLNKEQQEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKQVAPWNILAITFT 66
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM++R+ +++G A A+++ ISTFHS +++ R +++ F I
Sbjct: 67 NKAAREMKERVQALLGGA-AEDVWISTFHSMCVRMLRRDIDRIGINRNFSI--------- 116
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
L +++ V+K I D K KFE
Sbjct: 117 ------LDPTDQLSVIKAILKD-----------------------------KNIDPKKFE 141
Query: 408 RDGMDVAKASGK-----TPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCS 458
+ +A SG TP +F K ++I + + Y L ++LD+ DLI +
Sbjct: 142 PRTI-LATISGAKNDLLTPEQFAKRASTYYEKIVGDVYQEYQQRLLRNHSLDFDDLIMTT 200
Query: 459 VKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSF 517
+ L P+V Q YQ ++ I +DE+QDT+ QY+L++ LA I VGD DQSI+ +
Sbjct: 201 IHLFDRVPDVLQYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQNICAVGDADQSIYRW 260
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GADI SF +D+ N K I L +NYRST+ I++AA+ +I HNV R + K + T+N G
Sbjct: 261 RGADIRNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIAHNVNR-KPKRLWTENPEG 319
Query: 578 SKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERK 637
I+ E NE + F+ +I E +G Y A+LYR +V + F +
Sbjct: 320 KPIVYYEAMNEVDEAQFVARRIQEAVESGER---RYRDFAVLYRTNAQSRVIEEMFLKAN 376
Query: 638 IPFNI-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDK 696
IP+ I G+ FY +K ++ I+A LR DD R+ + ++ ID + +
Sbjct: 377 IPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIIN---VPKRGIGASTIDKLVR 433
Query: 697 ISTIRKCSFISAACDI----FGAKISGTFK--RSQLTQGRKVLLTLEMISKLVRREPSIS 750
+ + S A ++ F K +G R QL Q
Sbjct: 434 YAAEHELSLFEALGELEMIGFSTKTAGALAAFRGQLEQW--------------------- 472
Query: 751 AVITSVANMVPQKYLLEQRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAK 809
T + VP L+E+ V+D G + +L + + + Q L ++ +FLS K
Sbjct: 473 ---TQLQEYVPVTELVEE--VLDQSGYREMLKAERTIEA--QSRLENLDEFLSV----TK 521
Query: 810 EEGNVDQDKKGCINVLKAFID---YISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDI 866
NV DK L AF+ IS+ + E T + ++V T+H +KGLE+ +
Sbjct: 522 HFENVSDDKS-----LVAFLTDLALISDLD-ELNGTDQAAEGDAVVFMTLHAAKGLEFPV 575
Query: 867 VFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD---ANW 923
VF+ E P + +EEERRL YV +TRA ++L + M N
Sbjct: 576 VFLIGMEEGIFPHLRSLENE-----DEMEEERRLAYVGITRAEEELVLTNAQMRTLFGNI 630
Query: 924 QLLQPSRFLKEIPHHLRE 941
Q+ +PSRFL EIP HL E
Sbjct: 631 QMNRPSRFLDEIPAHLLE 648
>gi|160933076|ref|ZP_02080465.1| hypothetical protein CLOLEP_01918 [Clostridium leptum DSM 753]
gi|156868150|gb|EDO61522.1| putative ATP-dependent DNA helicase PcrA [Clostridium leptum DSM
753]
Length = 740
Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 206/730 (28%), Positives = 350/730 (47%), Gaps = 117/730 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKGI---------------SPSNILAMTFTTA 289
L+ +N +QLEA PLLI+AG GSGK P ILA+TFT
Sbjct: 8 LKKMNPRQLEAVL-HTEGPLLILAGAGSGKTTVLINRIAYIIDQSLAKPWQILAITFTNK 66
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA E+++R+ +++G T ++ +TFHS ++ R +++ +S F +Y +R +
Sbjct: 67 AAGELKERLTAMLGD-TGGDVWAATFHSTCARILRRDGDRIGYSSHFTVYDTDDSKRLVK 125
Query: 350 EAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
+ + L ++K++ K I +++ + + S+ + S F+L
Sbjct: 126 DCQKALNIDDKMISHKSILSEI-------SHAKDSMLSPADYQAAAGSDFRLA------- 171
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
KIG A+ E Y LR +A+D+ DL+ +V+L P+V
Sbjct: 172 -----------------KIG-----AVYELYQKRLREADAMDFDDLLGNTVELFRQCPDV 209
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDS 527
+ YQ+ ++ I+VDE+QDT+ +QY +++LA ++ + +VGDDDQSI+ F GA I S
Sbjct: 210 LEYYQNRFRYIMVDEYQDTNQVQYEFVRLLAEKSKNLCVVGDDDQSIYKFRGATIENIMS 269
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F K + N K IRL +NYRST+ I+ AA+++I +N +R + K + T+N G KI I N
Sbjct: 270 FEKSYPNAKVIRLEQNYRSTKNILNAANAVISNNEER-KGKTLWTENPEGDKIQIHTSSN 328
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
E + F+ ILE + G Y A+LYR + + F + IP+ I G
Sbjct: 329 EQDEAGFVATTILEQVAKGR----KYSDFAVLYRMNSQSNILEKVFVKSGIPYRIIGGHR 384
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFI 706
FY ++ +R +IA L D+ RR+ + KR I DK TI S I
Sbjct: 385 FYERREIRDMIAYLSVINNPSDEIRLRRIVN--------QPKRSIG--DK--TIATASEI 432
Query: 707 SAA-----CDIFG-AKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
+ A ++ G A + +R+ + K+ +M+ +L+ S + + ++
Sbjct: 433 AGALGESLLEVLGRADEFDSLRRASV----KLKAFYDMMQELIDANDDESVSLHELYELI 488
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
LE+ ++ L E + + ++ + ++ L KF Q++ G
Sbjct: 489 -----LEKTGYIE----ALRGEKEEAETRIENINELASNLL--KF----------QEENG 527
Query: 821 CINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
L AF++ +S + +++ + ++V + T+H +KGLE+ +VF+ E P
Sbjct: 528 EEATLSAFLEEVSLMTDIDNY----DETADTVVMMTMHSAKGLEFPVVFLPGFEEGIFPG 583
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ NE ++EERRL YVA+TRA++ L++L M+ + +PSRF EIP
Sbjct: 584 LQAIYDP-NE----IQEERRLCYVAITRAKESLYLLNADSRMLFGSTSRNRPSRFSLEIP 638
Query: 937 HHLREVQAEQ 946
L EQ
Sbjct: 639 LDLINKTREQ 648
>gi|421488453|ref|ZP_15935841.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis SK304]
gi|400367670|gb|EJP20685.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis SK304]
Length = 763
Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 214/731 (29%), Positives = 336/731 (45%), Gaps = 119/731 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R + ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYGL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +II ++E
Sbjct: 266 EKDYPNAKVVLLEENYRSTKTILQAANDVIKNNQNR-RPKNLWTQNADGEQIIYYRANDE 324
Query: 589 DAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
+ F+ I L N P + A+LYR + + A + IP+ + G
Sbjct: 325 QDEAVFVAKTIDELGRTQNFP-----HKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGT 379
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTI 700
FY +K +R IIA L D+ + R+ E KR ++ I + +
Sbjct: 380 KFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANM 431
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
+ S + A+ +I + I G +S +L E + +L SI+ ++ +V
Sbjct: 432 QDMSMLDASANIMLSGIKGKAAQSIWDFANMILDLREQLDQL-----SITELVEAV---- 482
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
LE+ +D +LN L S + + ++ +FLS T ++ Q++
Sbjct: 483 -----LEKTGYID-----ILNAQATLESKAR--VENIEEFLSV--TKNFDDNPDSQEEAT 528
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 529 GLDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFIIGMEENVFPLS 585
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLK 933
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 586 R-----AAEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFIN 636
Query: 934 EIPHHLREVQA 944
EI L E Q
Sbjct: 637 EISSDLLEYQG 647
>gi|421193178|ref|ZP_15650429.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni AWRIB553]
gi|399973160|gb|EJO07346.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni AWRIB553]
Length = 748
Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 204/724 (28%), Positives = 339/724 (46%), Gaps = 111/724 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L LND+Q EA PLLI+AG GSGK + P +ILA+TFT
Sbjct: 5 LTGLNDKQKEAVLT-TEGPLLIMAGAGSGKTRVLTHRVAYLVKEKHVDPWSILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++RI +V + A+ + +STFH+ S ++ R +K+ T+ F I QR
Sbjct: 64 AAREMKERIAGLVDEEDARSIWVSTFHALSARILRRDVDKIGFTTSFSILDSSGQR---- 119
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++K + D+ + + S+S+FK N +
Sbjct: 120 -----------TLMKHVLNDLNYDSNQYD---------PKSILASISNFK----NALQTP 155
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ AK + KTP DE + + Y L ++D+ DLI +++L P+V
Sbjct: 156 --NDAKTAAKTPF------DEAVSESYDLYERRLTQSQSMDFDDLIMRTIQLFKQAPDVL 207
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN----RITIVGDDDQSIFSFNGADISGF 525
YQ +K I VDE+QDT+ QY L+++LA+ + + +VGD DQSI+ + GAD++
Sbjct: 208 HYYQHKFKYIHVDEYQDTNGAQYKLVEMLAAGDFGSRNLAVVGDSDQSIYGWRGADMNNI 267
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
+F KDF K + L RNYRST+ I+ AA+ +IQ+N++R + KN+ T+N G+ I
Sbjct: 268 LNFEKDFPGAKTVLLERNYRSTKHILMAANQVIQNNIER-KPKNLWTNNQDGNLIHYYRA 326
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHG 644
+E + +++ KI G S AIL+R ++F+ F KI + + G
Sbjct: 327 QSESDEAHYVLTKIQAGVKKG----RSLNDFAILFRTNAQSRIFEQVFNSNKIQYTMVGG 382
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIRK 702
F+ +K ++ I+A L+ T +D + R+ E KR I I+K+ +
Sbjct: 383 TRFFERKEIQDIVAYLQLTANLDNDTAFERIVN--------EPKRSIGSSSIEKLRSFAA 434
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
+S I + + RK +++ S + S +T +AN +
Sbjct: 435 KKGLSLMKSIVVLDDESRLSKKAQSNFRKFAQMIQVFS-----DQSHFLSLTELANEIFD 489
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
+ + ++ V + +DL S Q + ++ +FLS + + + D++
Sbjct: 490 QTGIREQYV----------KKDDLES--QSRVENLDEFLS---QTKQFDQDYDEEASETN 534
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
N L +D++ + ++ VTL T+H +KGLE+ +VF+ E P
Sbjct: 535 NPL---VDFLGQTALVSDLDSYDESAGQVTLMTVHAAKGLEFPVVFIVGLEEGIFPSAR- 590
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLF-------ILYVMMDANWQLLQPSRFLKEI 935
A+ E+ +EEERRL YVA+TRA+++L+ +LY +N +PS FL EI
Sbjct: 591 ---AMMER-DGLEEERRLAYVAITRAQEELYLTNAFGRLLYGRAQSN----KPSMFLDEI 642
Query: 936 PHHL 939
L
Sbjct: 643 DDSL 646
>gi|125975357|ref|YP_001039267.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum ATCC
27405]
gi|256005497|ref|ZP_05430459.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum DSM 2360]
gi|281419317|ref|ZP_06250332.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum JW20]
gi|385777792|ref|YP_005686957.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum DSM 1313]
gi|419724018|ref|ZP_14251111.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum AD2]
gi|419726156|ref|ZP_14253179.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum YS]
gi|125715582|gb|ABN54074.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum ATCC
27405]
gi|255990552|gb|EEU00672.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum DSM 2360]
gi|281406937|gb|EFB37200.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum JW20]
gi|316939472|gb|ADU73506.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum DSM 1313]
gi|380770208|gb|EIC04105.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum YS]
gi|380779970|gb|EIC09675.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum AD2]
Length = 741
Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 222/766 (28%), Positives = 362/766 (47%), Gaps = 133/766 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LN +Q EA + PLL++AG GSGK + P++ILA+TFT
Sbjct: 4 LKDLNKEQREAVL-HVDGPLLVLAGAGSGKTKVLTHRIAYLIKEKNVHPASILAITFTNK 62
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+RI +V + + + +STFHS +++ R EK++ F+I+ + Q+
Sbjct: 63 AAREMRERIDRLV-EDVSDSIWVSTFHSMCVRILRRDIEKIDYDKNFVIFDYADQQN--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
VVK ++ +D +F ++ L M+
Sbjct: 119 ------------VVKDCLKELNLSDKNFP-PKSILEMIGR-------------------- 145
Query: 410 GMDVAKASGKTPAEFRKI--GD---EIGAAILENYNGILRSCNALDYHDLISCSVKLLST 464
AK TP + K+ GD E A + E Y L+ NALD+ D+I ++KL
Sbjct: 146 ----AKDELITPDSYLKMYSGDFRMEKIARVYELYQKKLKQNNALDFDDIIMLTIKLFLD 201
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADIS 523
PEV YQ +K I+VDE+QDT+ QYSL+ +LA R + +VGDDDQSI+ + GA+I
Sbjct: 202 NPEVLNYYQRKFKYILVDEYQDTNTAQYSLVSLLAQGYRNLCVVGDDDQSIYGWRGANIR 261
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
F K+F + K I+L +NYRST+ I++AA+ +I++NV R + K + T+N G I
Sbjct: 262 NILDFEKEFKDAKVIKLEQNYRSTQIILDAANHVIKNNVGR-KAKRLWTNNKGGDGIRYL 320
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASIC-----SYGSIAILYRRQVSGKVFQTAFRERKI 638
EC NE + F+ +I +C SY A+LYR +V + I
Sbjct: 321 ECLNEHEEAYFVASEI--------KRLCREQNRSYKDFAVLYRINAMSRVIEDELMREGI 372
Query: 639 PFNIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VID 692
+ I G+ FY +K ++ +IA LR D+ +R+ E KR ID
Sbjct: 373 SYKIFGGLRFYDRKEIKDVIAYLRVIQNPSDNISLKRIIN--------EPKRGIGNATID 424
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV 752
++++ R S S IS + +L + LE L+ + S V
Sbjct: 425 TAERLANERGVSIFSI--------ISSAAEIPELARASS---KLEKFVSLINSLRAQSMV 473
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
+T+ + M+ + +LE+ +++ ++N L + Q + ++ + LS E
Sbjct: 474 MTA-SEMIEE--VLERTGILE-----AYRQENTLEA--QSRIENIKELLSVAIEFENE-- 521
Query: 813 NVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKA 872
++K + L A + +S+ +T +N V L T+H +KGLE+ +VF+
Sbjct: 522 ---SEEKSLTDFL-AHVSLVSDVDT------MDENSEYVALMTLHSAKGLEFPVVFLVGM 571
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM---MDANWQLLQPS 929
E P + +EEERRL YV +TRA++ L++ + N + S
Sbjct: 572 EEGIFPGYRSMTNE-----SELEEERRLCYVGITRAKENLYMTSTFSRTLFGNTTYNRVS 626
Query: 930 RFLKEIPHHLREVQAEQSVQDQHENIPEGTAQFTINLPREENCCET 975
RF+KEIP L + ++ + + ENI EGTA+ + L ++ N ++
Sbjct: 627 RFVKEIPEELFDFGGDKK-KAKDENIGEGTAKKSGTLNKDFNSSKS 671
>gi|187776812|ref|ZP_02993285.1| hypothetical protein CLOSPO_00328 [Clostridium sporogenes ATCC
15579]
gi|187775471|gb|EDU39273.1| ATP-dependent DNA helicase PcrA [Clostridium sporogenes ATCC 15579]
Length = 738
Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 206/699 (29%), Positives = 337/699 (48%), Gaps = 128/699 (18%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EAA + PLLI+AG GSGK I PS ILA+TFT AA
Sbjct: 7 LNKEQYEAATT-IDGPLLILAGAGSGKTRVLTHRIAHMIENLNIYPSKILAITFTNKAAG 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++RI ++VG + + +STFHS +++ R +KL F IY Q+ + + +
Sbjct: 66 EMKERIKALVGDV-VEGMWVSTFHSSCVRILRREIDKLGYDKNFTIYDTYDQKTLVKQCM 124
Query: 353 RLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
L N+K + + I + T + S FK + +D
Sbjct: 125 EELNINDKEITDREIINTISTQKDN---------------LISPKEFKKISNGNYRKD-- 167
Query: 412 DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQE 471
KI D A IL Y L++ NALD+ DLI +V+L T E +
Sbjct: 168 --------------KIAD---AYIL--YQKKLKTNNALDFDDLIYKTVELFKTNKEALEF 208
Query: 472 YQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRK 530
YQ +K I+VDE+QDT+ QY L+++LAS H I +VGDDDQ I+ + GADIS +F K
Sbjct: 209 YQRKFKYIMVDEYQDTNKSQYELVKLLASVHRNICVVGDDDQCIYEWRGADISNILNFEK 268
Query: 531 DFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDA 590
D+ K I+L +NYRS I+ AA+ +I++N +R K ++T+N +G+KI + +++
Sbjct: 269 DYKEAKVIKLEQNYRSKGNILNAANEVIKNNSQRKN-KVLRTENENGNKIKVFRAYSDID 327
Query: 591 QCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
+ F+ + KI++ + S+ A+LYR ++F+ F +R IP+ I G+
Sbjct: 328 EAKFVASEMKKIIKDSDK------SFNDFAVLYRTNAQSRIFEDVFMKRDIPYRLIGGLK 381
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFI 706
FY +K ++ ++A L+ DD RR+ KR I +T++K
Sbjct: 382 FYDRKEIKDLMAYLKLINNPLDDISLRRIINV--------PKRSIGD----ATVKKVQEF 429
Query: 707 SAACD------IFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRR--EPSISAVITSVAN 758
+ D + A T + +T +K + +++ +R+ E S+SA+I +
Sbjct: 430 ANEMDECMYSVLLDADQILTLSQRSITSIKKF---VSIMNSFIRKKDEISVSALIKEI-- 484
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSV--LQYLLADVTDFLSTKFTAAKEEGNVDQ 816
+ YL E ++ + D D+ V L+ L++ DF KE +
Sbjct: 485 LEETGYLKELKSSKNPD---------DVSRVENLKELVSAAADF-------EKES----E 524
Query: 817 DKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANET 875
DK L F++ ++ + +++ +N +SV + T+H +KGLE+ +VF+
Sbjct: 525 DKS-----LGMFLEKVALVTDIDNY----DENSDSVAMMTVHSAKGLEFPVVFMVGMENG 575
Query: 876 EIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI 914
P + +EE RRL YVA+TRA+++L+I
Sbjct: 576 IFPGTQSLSDP-----KEMEESRRLCYVAITRAKEQLYI 609
>gi|206890688|ref|YP_002249662.1| ATP-dependent DNA helicase PcrA [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|206742626|gb|ACI21683.1| ATP-dependent DNA helicase PcrA [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 699
Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 206/731 (28%), Positives = 329/731 (45%), Gaps = 156/731 (21%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LN Q EA PLL++AG GSGK G+ PS+I +TFT
Sbjct: 6 LRDLNPAQQEAVVY-CEGPLLVLAGAGSGKTRVITYKYAYLTKSKGLLPSSIFTVTFTNK 64
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++RI + K I TFHS +++ R+H + + +F+IY Q I
Sbjct: 65 AADEMKERIFKMCN-GNWKNTWIGTFHSLCVRILRAHIDNIGYKRDFIIYDDDDQAGLIK 123
Query: 350 EAVRLLENEKIL---VVKRIS---TDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQY 403
++ L + L VV +IS ++++T + + +
Sbjct: 124 RILKDLNMHEALCKCVVTKISNLKSNLITPEDYISNI----------------------- 160
Query: 404 NKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
+G + + G+ I Y L+ NALD+ DLI C +KL +
Sbjct: 161 -----EGYEFEERLGR---------------IYMRYQNELKRYNALDFDDLILCVIKLFN 200
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADI 522
++ + Y + +K I+VDEFQDT+ QY LLQ+L H I VGDDDQSI+ F GA+I
Sbjct: 201 ENEDLLRRYSEQFKYILVDEFQDTNKSQYMLLQLLCRYHKNICAVGDDDQSIYKFRGANI 260
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
+F KDF + K ++L +NYRST+ I+ A+S++I N R + K + T+ G KI
Sbjct: 261 HNILNFEKDFPDTKIVKLEQNYRSTKHIILASSAMISRNTMR-KPKILWTERDWGEKIFY 319
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN- 641
+ +NE+ + +I I E G Y AILYR + + + A R IP+
Sbjct: 320 CQLNNEEEEAKYIAKNIKELYLKGDY---EYKDFAILYRLVLQARALEEALRMEGIPYQV 376
Query: 642 IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFK---------AFLLLEKEEKKRVID 692
I GV+FY +K ++ ++A +R L D+ R+ A +E E KK +I
Sbjct: 377 ISGVSFYHRKEIKDVLAYMRFILNKEDNVSLMRIINTPPRGIGASAISKIESEAKKYMIS 436
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV 752
+ I I K +SA T K++ + +I +L ++
Sbjct: 437 TFEAIKRIIKEDTVSA------------------TLKEKLVSFVTLIDELSEKD------ 472
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLA----DVTDFLSTKFTAA 808
A+M+ + +++F G E++ +++VL++L + V +FL
Sbjct: 473 YKDAASMI--------KDILNFTGYLEEIEEDRIQNVLEFLSSAEKMPVREFL------- 517
Query: 809 KEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVF 868
DK + + + + +N V+L T+H +KGLE+ +VF
Sbjct: 518 --------DKVALFSNVDTW----------------ENKKNYVSLLTLHAAKGLEFPVVF 553
Query: 869 VAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQL 925
+A E +P E ++EERRL YV MTRA+ LFI V + + Q
Sbjct: 554 IAGCEEGILPYFKAL-----EDPFELQEERRLFYVGMTRAKNLLFITSVKQRKLYSKVQK 608
Query: 926 LQPSRFLKEIP 936
+ S F+K+IP
Sbjct: 609 QETSSFIKDIP 619
>gi|157691415|ref|YP_001485877.1| ATP-dependent DNA helicase [Bacillus pumilus SAFR-032]
gi|157680173|gb|ABV61317.1| ATP-dependent DNA helicase [Bacillus pumilus SAFR-032]
Length = 740
Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 212/728 (29%), Positives = 334/728 (45%), Gaps = 125/728 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ LND Q EA PLL++AG GSGK ++P NILA+TFT
Sbjct: 9 LEGLNDAQKEAVKA-TDGPLLLMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNK 67
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+ +I+G A ++ ISTFHS +++ R +++ F I Q I
Sbjct: 68 AAREMRERVQAILGPG-ADDIWISTFHSMCVRILRRDIDRIGVNRNFSILDTSDQLSVI- 125
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ IL + I G S+SS K +
Sbjct: 126 --------KNILKERNIDPKKFDPRSILG---------------SISSAK---------N 153
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ A+ KT +F D++ + + +Y L +LD+ DLI +++L PEV
Sbjct: 154 ELIDAEEYAKTAGDFY---DQVVSDVYTDYQKRLLKNQSLDFDDLIMMTIRLFERIPEVL 210
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ ++ I VDE+QDT+ QY L+++LA I +VGD DQSI+ + GADI+ SF
Sbjct: 211 EHYQRKFQYIHVDEYQDTNRAQYMLVKLLAQRFQNICVVGDSDQSIYRWRGADITNILSF 270
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + + I L +NYRST+ I+ AA+++IQ+N R + KN+ T+N G+KI NE
Sbjct: 271 EKDYPSSEVILLEQNYRSTKRILNAANTVIQNNSNR-KPKNLWTENDEGAKIAYYRADNE 329
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVAF 647
+ F+ KI + +G + + AILYR +V + + I +NI G F
Sbjct: 330 FGEGQFVAGKIHQLHQSGKRKLSDF---AILYRTNAQSRVIEETLLKSNIQYNIVGGTKF 386
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID--HIDKISTIRKCSF 705
Y +K ++ I+A LR DD + R+ KR I +DKI+ + +
Sbjct: 387 YDRKEIKDILAYLRLVANPDDDISFARIVNV--------PKRGIGATSVDKIAAYAEMND 438
Query: 706 IS-----AACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
+S A D G + Q +I ++ + +S +T + +
Sbjct: 439 LSMFEALAQVDFIGLSARAANALDEFKQ---------LIDQMTNMQDYLS--VTELTEEI 487
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
+K + V+ K + Q L ++ +FLS T EE N D+
Sbjct: 488 LEKTGYREALKVE----KTIEA--------QSRLENIDEFLSV--TKNFEEQNEDKSLVT 533
Query: 821 CIN--VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
+ L A ID + E E E ++++V L T+H +KGLE+ +VF+ E P
Sbjct: 534 FLTDLALVADIDKLDENEEE--------DQDAVILMTLHAAKGLEFPVVFLMGMEEGVFP 585
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQPSRF 931
+ +EEERRL YV +TRA ++L++ L+ + N + SRF
Sbjct: 586 HSRSLM-----EDAEMEEERRLAYVGITRAEEELYLSSAKMRTLFGRTNMNLE----SRF 636
Query: 932 LKEIPHHL 939
++EIP L
Sbjct: 637 IREIPADL 644
>gi|357238921|ref|ZP_09126257.1| ATP-dependent DNA helicase PcrA [Streptococcus ictaluri 707-05]
gi|356752643|gb|EHI69768.1| ATP-dependent DNA helicase PcrA [Streptococcus ictaluri 707-05]
Length = 764
Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 215/728 (29%), Positives = 332/728 (45%), Gaps = 112/728 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q AA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDKQ-AAAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R S+ K+ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMRERALSL--NPQTKDTLIATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+L+N + K +L T S + L +E
Sbjct: 121 --NRILKNLNLDSKKWNERSILGT-------------------ISNAKNDLLDEKTYEAQ 159
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D I +I A + Y LR ALD+ DLI +++L P+V
Sbjct: 160 AGD--------------IYSQIVARCYKAYQEELRRSEALDFDDLIMMTLRLFDQNPQVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 AYYQQKYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + + L NYRST+ I++AA+ +I HN KR + K + T N+ G ++ ++E
Sbjct: 266 EKDYPEARVVLLEENYRSTKKILQAANDVINHNQKR-RPKKLWTQNADGEPLVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F I + N S S+ A+LYR + + AF + IP+ + G F
Sbjct: 325 RDEAVFAASTISQL--NQKES-KSFKDFAVLYRTNAQSRTIEEAFLKSNIPYTMVGGTKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIRKC 703
Y +K +R +IA L D+ + R+ E K+ V +D + + + +
Sbjct: 382 YSRKEIRDLIAYLTIIANPSDNLSFERIV-------NEPKRGVGPGTLDKLRQFAYEQDM 434
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
S + AA ++F + + G K +Q LLT +L + +S ITS+A +
Sbjct: 435 SLLEAASNLFLSPLKG--KAAQAISDLSSLLT-----RLRQELDQLS--ITSLA-----E 480
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
LLE+ +D L N L S Q + ++ +FL+ N + G
Sbjct: 481 KLLEESGYLDS-----LKIQNTLES--QARIENIEEFLTVTKNFDDNSENQASSESGLDR 533
Query: 824 VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
+ + D +T+ ++ + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 534 LGRFLNDLALIADTDDSSSEASE----VTLMTLHAAKGLEFPVVFLIGMEEGVFPLSR-- 587
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEIP 936
+E +EEERRL YV +TRA + LF + +AN + L +P+RFLKEI
Sbjct: 588 ---ASEDPDELEEERRLAYVGITRAEEILF----LTNANTRTLFGKSSYNRPTRFLKEIS 640
Query: 937 HHLREVQA 944
L Q
Sbjct: 641 DSLLSYQG 648
>gi|148273735|ref|YP_001223296.1| ATP-dependent DNA helicase [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147831665|emb|CAN02634.1| ATP-dependent DNA helicase [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 816
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 214/742 (28%), Positives = 331/742 (44%), Gaps = 129/742 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ LN +Q EA LLIVAG GSGK PS ILA+TFT
Sbjct: 35 LEGLNPEQREAVV-YRGPALLIVAGAGSGKTRVLTHRIASLIESREAWPSQILAITFTNK 93
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EMR+R+ S++G+A+ + + ISTFHS +++ R AE T F IY R I
Sbjct: 94 AAAEMRERVESLLGQAS-EGMWISTFHSACVRILRREAEAFGFTQNFTIYDSADSRVLIK 152
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++K++ D L F++SS + +K + +
Sbjct: 153 R-----------IIKQLDADTLG--------------------FTVSSVS-GRISKLKNE 180
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D A +T A F + + I Y L S NA D+ DLI +V L FP+V
Sbjct: 181 LSD-ADTFART-ANFNDPAEAMFVEIFRQYTRSLASANAFDFDDLIGQTVYLFRAFPKVA 238
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILA--------------SHN--------RITIV 507
YQ ++ ++VDE+QDT+ QYSL++ L S N +T+V
Sbjct: 239 ALYQRRFRHVLVDEYQDTNHAQYSLIRELTRAVAPEDVPVDTRMSTNGMGGIDGASLTVV 298
Query: 508 GDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQL 567
GD DQSI++F GADI F +DF K + L +NYRST+ I+ AA+++I +N R
Sbjct: 299 GDSDQSIYAFRGADIRNITEFERDFPQSKVVLLEQNYRSTQNILTAANAVISNNFDRKD- 357
Query: 568 KNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGK 627
K + T G KI+ ++ + F+ D+I + G A Y IA+ YR +
Sbjct: 358 KKLWTSIGDGDKIVGFTGYSGHDEAQFVADEIQKLHEEGTA----YSEIAVFYRTNAQTR 413
Query: 628 VFQTAFRERKIPFNI-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEE 686
+ +P+ I G FY + ++ +A L D RR+
Sbjct: 414 ALEEILIRSAVPYRIMGGTKFYERAEIKDAMAYLVAVANPADVLALRRILNT-------- 465
Query: 687 KKRVIDHIDKISTIRKCSFISAACDIFGAKISGTFKR-SQLTQGRKVLLTLEMISKLVRR 745
KR I + + ++ + G +R S+L G KV + +S+++
Sbjct: 466 PKRGIGPATETA-------LANFAESHGVTFREAMRRASELGLGPKVTQAILALSRMLDE 518
Query: 746 -----EPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDF 800
+P TSV ++V LLE+ +V +D ++ L+A
Sbjct: 519 VALLLDPDRPEGRTSVGDLV--TTLLEKSGLVQALRASKDAQDEARAENVEELVA----- 571
Query: 801 LSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSK 860
++ +F+ EG + +D+++E + D+ +V+L T+H +K
Sbjct: 572 VTKEFSRNNPEGQL--------------VDFLTEVSLVAAADELDDSSGTVSLMTLHTAK 617
Query: 861 GLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD 920
GLE+D VF+ E +P H + NE G EERRL YV +TRAR++LFI M
Sbjct: 618 GLEYDSVFLTGVEEDLLP--HRMS--ANEPGGPA-EERRLFYVGITRARRRLFISLAMTR 672
Query: 921 ANW---QLLQPSRFLKEIPHHL 939
A + + PSR+L+EIP L
Sbjct: 673 AQFGEVNVAMPSRYLQEIPAEL 694
>gi|386720727|ref|YP_006187052.1| protein PcrA [Paenibacillus mucilaginosus K02]
gi|384087851|gb|AFH59287.1| protein PcrA [Paenibacillus mucilaginosus K02]
Length = 729
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 216/737 (29%), Positives = 334/737 (45%), Gaps = 122/737 (16%)
Query: 236 NMPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSN 280
N P + + + LN QQ + A + PLLI+AG GSGK +P +
Sbjct: 3 NQPIDIFQAVNKLNPQQ-KQAVETVEGPLLIMAGAGSGKTRVLTHRIAYLIATRKAAPWS 61
Query: 281 ILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYG 340
ILA+TFT AA EM++R+ S+VG ++ +STFHS +++ R ++ TS F I
Sbjct: 62 ILAITFTNKAAREMQERVSSLVG-PQGGDIWVSTFHSMCVRILRRDISRIGFTSNFSILD 120
Query: 341 HGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKL 400
G Q + +R + E+ + K
Sbjct: 121 SGDQ----LSVIRNIMKEQNIDSK------------------------------------ 140
Query: 401 CQYNKFERDGMDVAKASGK----TPAEF-RKIGD---EIGAAILENYNGILRSCNALDYH 452
KFE + A ++ K TP F RKIGD I A + +Y LR+ N+LD+
Sbjct: 141 ----KFEPKAVQAAISNAKNELQTPEMFERKIGDYFDGIVAKVYSSYQRKLRANNSLDFD 196
Query: 453 DLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDD 511
DLI +++L PEV YQ+ ++ I VDE+QDT+ QY L ++LA H RI +VGD D
Sbjct: 197 DLIMTTIELFKQVPEVLDFYQNKFQYIHVDEYQDTNRAQYMLCRMLADKHKRICVVGDSD 256
Query: 512 QSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQ 571
QSI+ + GADIS F KD+ N I L +NYRST I+ AA+ +I +N R ++KN+
Sbjct: 257 QSIYKWRGADISNILDFEKDYPNATTILLEQNYRSTSNILNAANKVIANNTGR-KVKNLW 315
Query: 572 TDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQT 631
TD + G KI + + +E + FI +I + NG Y AILYR +V +
Sbjct: 316 TDKAEGDKIKVYQADSEHEEGYFITGEIRRNLDNGR----RYKDHAILYRTNAQSRVIEE 371
Query: 632 AFRERKIPFNI-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV 690
+ IP+ I GV FY +K ++ I+A LR DD + RV K+ +
Sbjct: 372 ILIKSDIPYQIVGGVKFYDRKEIKDILAYLRLISNPDDDISFARVVNV-------PKRGI 424
Query: 691 ID-HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSI 749
D +D+ ++ A FG + + ++EM +K
Sbjct: 425 GDTSLDR---------LAGAAAQFGVSLFAMLENVD---------SIEMAAKAKNALADF 466
Query: 750 SAVITSVANMVPQKYLLE-QRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTA 807
+I ++ MV + E +++ G + L +N + S Q L ++ +FLS
Sbjct: 467 RDMIENLHRMVEYLSVTELTEKMLELSGYRDELRRENTIES--QARLENIDEFLSVTMDF 524
Query: 808 AKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIV 867
K ++DK +++ D + + + + V L T+H +KGLE+ +V
Sbjct: 525 EKR----NEDK----SLVSFLTDLALIADIDSMNADPEEGKQGVVLMTMHSAKGLEFPVV 576
Query: 868 FVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL- 926
F+ E P H A NE+ YV +TRA ++LF+ M +
Sbjct: 577 FIMGLEEGVFP--HSRAVADNEELEEERRL---AYVGITRAEEQLFLTCARMRTLFGRTA 631
Query: 927 --QPSRFLKEIPHHLRE 941
PSRFL+E+P L E
Sbjct: 632 QNAPSRFLRELPPELLE 648
>gi|417943123|ref|ZP_12586378.1| Superfamily I DNA and RNA helicase [Bifidobacterium breve CECT
7263]
gi|376165934|gb|EHS84862.1| Superfamily I DNA and RNA helicase [Bifidobacterium breve CECT
7263]
Length = 904
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 209/736 (28%), Positives = 325/736 (44%), Gaps = 113/736 (15%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN QQ EA LLI AG GSGK G PS ILA+TFT AA+
Sbjct: 32 LNPQQAEA-VQYRGQALLIGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTNKAAA 90
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EMR+R+GS++G A+ + +STFHS +++ R + + S F IY R V
Sbjct: 91 EMRERLGSLIGP-VAQRMWVSTFHSACVRILRRDGKSIGLKSGFSIYDSADSERL----V 145
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+++ E L +KR + + GH ++ +L L F
Sbjct: 146 KIIATEFNLDIKRYTPRSIL--GHISDLKNNLTGWKENLAVHAPDF-------------- 189
Query: 413 VAKASGKTPAEFRKIGD--EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
G+ +F +GD I A I Y L NA+D+ DLI +V+LL T P V +
Sbjct: 190 ---TPGQRGYQFGTVGDLEAIYAVIYAEYEHRLALANAVDFDDLIGRTVELLRTDPAVAE 246
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR------------------ITIVGDDDQ 512
Y ++ I+VDE+QDT+ QY L++ LA + IT+VGD DQ
Sbjct: 247 YYHHRFRYILVDEYQDTNHAQYVLVRELAGVDTGEKAIPGAPNAGKAGPAWITVVGDSDQ 306
Query: 513 SIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQT 572
SI++F GADI F +DF N K I L +NYRST+ I++AA+++I +N R + K + T
Sbjct: 307 SIYAFRGADIRNIQDFEQDFPNAKTIMLEQNYRSTQTILDAANAVISNNEGR-KPKKLWT 365
Query: 573 DNSHGSKIIIKECHNEDAQCAFIIDKILE-HASNGPASICSYGSIAILYRRQVSGKVFQT 631
G I+ N + ++ +I HA +Y +AI+YR + +
Sbjct: 366 ALGKGEPIVGYAADNAQQEAQWVATEIARLHAEED----IAYSDMAIMYRANAQSRSLEE 421
Query: 632 AFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV 690
A +P+ + G FY ++ ++ +A L+ + DD RR+ K+ +
Sbjct: 422 ALINAGLPYQLVGGTKFYERREIKDALAYLQALVNPDDDVNLRRILNV-------PKRGL 474
Query: 691 IDHIDKI----STIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRRE 746
D + I + R SF A + + T +QL R ++ L ++ +
Sbjct: 475 GDRAEGILLAYARERGTSFFYALMHLDEIQDVPTRTATQLKAFRDLMGELSQFTRAHDAK 534
Query: 747 PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFT 806
P S ++ V + LE+ VD L + L+S T
Sbjct: 535 P--SEIVAEVLEKSGLRAELEKS--VDPQDASRLENLSQLQS-----------------T 573
Query: 807 AAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDI 866
AA+ E N L AF++ + ++ VTL T+H +KGLE+ +
Sbjct: 574 AAEFEQNTPD------ATLSAFLETTALVADSDQLPGEAEDSGKVTLMTLHTAKGLEYPV 627
Query: 867 VFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQL- 925
VF+ + P E T ++EERRL YV +TRA+++L++ + + W
Sbjct: 628 VFLTGMEQGTFPHSRSM-----EDTTELQEERRLAYVGITRAKRRLYVTRAAVRSQWGQA 682
Query: 926 --LQPSRFLKEIPHHL 939
+ PS+FL EIP L
Sbjct: 683 ADMMPSQFLDEIPDSL 698
>gi|365902571|ref|ZP_09440394.1| ATP-dependent DNA helicase PcrA [Lactobacillus malefermentans KCTC
3548]
Length = 750
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 212/748 (28%), Positives = 337/748 (45%), Gaps = 128/748 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ +ND+Q EA PLLI+AG GSGK GI P ILA+TFT
Sbjct: 7 LKGMNDKQQEAVL-QTEGPLLIMAGAGSGKTRVLTHRIAYLIEEKGIMPWRILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR RI ++G+ + ++ STFH+ +++ R H + L F I +QR
Sbjct: 66 AAKEMRTRIVQLLGE-SGNDVWASTFHALCVRILRRHIDLLGYNRAFTIADTSEQR---- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+VKRI D+ F RA L
Sbjct: 121 -----------TLVKRIMKDLNLDPKQFD-PRAVL------------------------G 144
Query: 410 GMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+ AK S +TP++FRK +E A I E Y L A+D+ DLI ++KL +
Sbjct: 145 AISNAKNSLQTPSDFRKSASGPFEEKAAEIYEAYQKQLAQNQAVDFDDLIMLTIKLFNQE 204
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISG 524
E+ ++YQD ++ I VDE+QDT+ QY+L+ +LA + + +VGD DQSI+ + GA++
Sbjct: 205 AEILKQYQDKFQYIHVDEYQDTNDAQYTLVNLLAKGYQNLCVVGDADQSIYGWRGANMDN 264
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+F KD+ + L +NYRST+ I++AA+ +I +N R KN+ T+N G+ I
Sbjct: 265 IMNFEKDYPSAHITLLEQNYRSTKRILQAANDVIGNNAYRKD-KNLWTENGEGNPISYYR 323
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
+E+ + +++ KI E Y AILYR ++ + + IP++ +
Sbjct: 324 AQSENDESHYVVSKIQEGIKEQNE---KYNDFAILYRTNAQSRIIEETLLKANIPYSMVG 380
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI-----DHIDKIS 698
G FY +K +R +++ L D RV E KR I D + +
Sbjct: 381 GHKFYDRKEIRDVLSYLTLIANPADSISLERVIN--------EPKRGIGSGSLDKLRDFA 432
Query: 699 TIRKCSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVA 757
S + AA + ++G + + ++ G E I +L +E + +T +
Sbjct: 433 NYNNWSELEAAQNAEIANDLTGRAQNAIVSFG-------ETIRQL--QEDAKKMNVTELT 483
Query: 758 NMVPQK--YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVD 815
V +K Y+ +A + + +L+SV Q F T A E G+
Sbjct: 484 EQVLEKTGYMAALKASKSLESESRIENLEELKSVTQ-------KFDQTWDEEASEAGS-- 534
Query: 816 QDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANET 875
D++S+ + +N+N VTL T+H +KGLE+ ++F+ E
Sbjct: 535 -----------QLADFLSDLALVSDQDDVDENQNQVTLMTLHAAKGLEFPVIFLVGLEEG 583
Query: 876 EIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQP 928
PL A+ E ++EEERRL YV +TRA K+L++ LY N
Sbjct: 584 IFPLSR----AITED-DALEEERRLAYVGITRAEKQLYLTNAYSRTLYGRRQNN----PA 634
Query: 929 SRFLKEIPHHLREVQAEQSVQDQHENIP 956
SRF++EI L + E + + +P
Sbjct: 635 SRFVEEIEPELLHIDNEPTQTAGGKKLP 662
>gi|420156573|ref|ZP_14663415.1| putative ATP-dependent DNA helicase PcrA [Clostridium sp. MSTE9]
gi|394757503|gb|EJF40535.1| putative ATP-dependent DNA helicase PcrA [Clostridium sp. MSTE9]
Length = 746
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 204/710 (28%), Positives = 328/710 (46%), Gaps = 124/710 (17%)
Query: 263 PLLIVAGPGSGK--------------GISPSNILAMTFTTAAASEMRDRIGSIVGKATAK 308
PLLI+AG GSGK G P I+ +TFT AA E++DR+ +++G+
Sbjct: 32 PLLILAGAGSGKTTVLVNRVAYLIQEGCDPYRIMTITFTNKAAGELKDRLVAMLGEH-GS 90
Query: 309 ELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVRLLE-NEKILVVKRIS 367
++ STFHS ++ R A++L T F IY RR + + ++ L+ +EK L VK +
Sbjct: 91 QVWASTFHSTCARMLRRDADRLGYTPHFTIYDTDDSRRVMKDCLKALQIDEKELPVKSVL 150
Query: 368 TDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDVAKASGKTPAEFR-- 425
G G + SL +D + +G+ +FR
Sbjct: 151 -------GEIGRAKDSL--------------------------VDAEEFAGRAGDDFRLK 177
Query: 426 KIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQ 485
+I A Y L++ +A+D+ DLI +V+L P+V + YQ+ + +VDE+Q
Sbjct: 178 RI-----AEAYRMYQNRLKTSDAMDFDDLIFNTVELFRACPDVLEYYQNRFHYYMVDEYQ 232
Query: 486 DTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNY 544
DT+ QY + +LA N+ + +VGDDDQSI+ F GA I SF K F K IRL +NY
Sbjct: 233 DTNHAQYLFVSLLAQKNKNLCVVGDDDQSIYKFRGATIENILSFEKTFPGTKVIRLEQNY 292
Query: 545 RSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHAS 604
RST+ I++AA+++I++N +R + K++ T+N+ G + + +E + ++ ILE +
Sbjct: 293 RSTKNILDAANAVIENNTQR-KGKSLWTENAQGCPLYLHTSFSEQDEADYVATHILEGVA 351
Query: 605 NGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVAFYRKKVVRAIIAMLRTT 663
G Y A+LYR + + IP+ I GV FY +K +R ++A L
Sbjct: 352 KGR----KYSDFAVLYRMNSQSNSLEKMMVKSGIPYRIVGGVRFYDRKEIRDMLAYLSVI 407
Query: 664 LPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKISGTFKR 723
D+ RR+ + KR I I+ A +I A+ +G
Sbjct: 408 NNPSDEVRLRRIIN--------QPKRSIGE----------KTIAQAVEI--ARETG---- 443
Query: 724 SQLTQGRKVLLTLEMISKLVRREP--SISAVITSVANMVPQKYLLEQRAVVDF-DGGKLL 780
+L ++I+ EP +A + + A+++ + + V D +L+
Sbjct: 444 ---------MLLFDVINSAEDFEPLRRSAAKLQTFAHLIQELIEASNHSEVSLNDLYQLI 494
Query: 781 NEDNDLRSVLQYLLADVTDF------LSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISE 834
E D + L+ D D LS+ +EE N D G + + F D
Sbjct: 495 LEKTDYIASLRAEEDDAQDRVDNINELSSSLIKYQEE-NPDASLSGFLEEVSLFTDI--- 550
Query: 835 RETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSV 894
Q N + V L T+H +KGLE+ +VF+ + P + + +
Sbjct: 551 -------DQLDSNTDQVVLMTMHSAKGLEFPVVFLPGLEDGLFPGMQAIYNP-----SEI 598
Query: 895 EEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHHLRE 941
EEERRL YVA+TRAR++L + M+ + +PSRFL EIP L E
Sbjct: 599 EEERRLAYVAITRAREELHLTNAESRMIFGSTSRNKPSRFLNEIPEELVE 648
>gi|384197078|ref|YP_005582822.1| ATP-dependent DNA helicase PcrA [Bifidobacterium breve
ACS-071-V-Sch8b]
gi|333109911|gb|AEF26927.1| ATP-dependent DNA helicase PcrA [Bifidobacterium breve
ACS-071-V-Sch8b]
Length = 891
Score = 231 bits (588), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 208/736 (28%), Positives = 326/736 (44%), Gaps = 113/736 (15%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN QQ EA LLI AG GSGK G PS ILA+TFT AA+
Sbjct: 19 LNPQQAEA-VQYRGQALLIGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTNKAAA 77
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EMR+R+GS++G A+ + +STFHS +++ R + + S F IY R V
Sbjct: 78 EMRERLGSLIGP-VAQRMWVSTFHSACVRILRRDGKSIGLKSGFSIYDSADSERL----V 132
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+++ E L +KR + + GH ++ +L L F
Sbjct: 133 KIIATEFNLDIKRYTPRSIL--GHISDLKNNLTGWKENLAVHAPDF-------------- 176
Query: 413 VAKASGKTPAEFRKIGD--EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
G+ +F +GD I A I Y L NA+D+ DLI +V+LL T P V +
Sbjct: 177 ---TPGQRGYQFGTVGDLEAIYAVIYAEYEHRLALANAVDFDDLIGRTVELLRTDPAVAE 233
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR------------------ITIVGDDDQ 512
Y ++ I+VDE+QDT+ QY L++ LA + IT+VGD DQ
Sbjct: 234 YYHHRFRYILVDEYQDTNHAQYVLVRELAGVDTGEKAIPGAPNAGKAGPAWITVVGDSDQ 293
Query: 513 SIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQT 572
SI++F GADI F +DF N K I L +NYRST+ I++AA+++I +N R + K + T
Sbjct: 294 SIYAFRGADIRNIQDFEQDFPNAKTIMLEQNYRSTQTILDAANAVISNNEGR-KPKKLWT 352
Query: 573 DNSHGSKIIIKECHNEDAQCAFIIDKILE-HASNGPASICSYGSIAILYRRQVSGKVFQT 631
G I+ N + ++ +I HA +Y +AI+YR + +
Sbjct: 353 ALGKGEPIVGYAADNAQQEAQWVATEIARLHAEED----IAYSDMAIMYRANAQSRSLEE 408
Query: 632 AFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV 690
A +P+ + G FY ++ ++ +A L+ + DD RR+ K+ +
Sbjct: 409 ALINAGLPYQLVGGTKFYERREIKDALAYLQALVNPDDDVNLRRILNV-------PKRGL 461
Query: 691 IDHIDKI----STIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRRE 746
D + I + R SF A + + T +QL R ++ L ++ +
Sbjct: 462 GDRAEGILLAYARERGTSFFYALMHLDEIQDVPTRTATQLKAFRDLMGELSQFTRAHDAK 521
Query: 747 PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFT 806
P S ++ V + LE ++V D +L N L L + +F
Sbjct: 522 P--SEIVAEVLEKSGLRAELE-KSVDPQDASRLEN--------LSQLQSTAAEF------ 564
Query: 807 AAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDI 866
E+ D L AF++ + ++ VTL T+H +KGLE+ +
Sbjct: 565 ---EQNTTDA-------TLSAFLETTALVADSDQLPGEAEDSGKVTLMTLHTAKGLEYPV 614
Query: 867 VFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQL- 925
VF+ + P E T ++EERRL YV +TRA+++L++ + + W
Sbjct: 615 VFLTGMEQGTFPHSRSM-----EDTTELQEERRLAYVGITRAKQRLYVTRAAVRSQWGQA 669
Query: 926 --LQPSRFLKEIPHHL 939
+ PS+FL EIP L
Sbjct: 670 ADMMPSQFLDEIPDSL 685
>gi|419719305|ref|ZP_14246591.1| putative ATP-dependent DNA helicase PcrA [Lachnoanaerobaculum
saburreum F0468]
gi|383304631|gb|EIC96030.1| putative ATP-dependent DNA helicase PcrA [Lachnoanaerobaculum
saburreum F0468]
Length = 733
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 215/756 (28%), Positives = 352/756 (46%), Gaps = 142/756 (18%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAAS 292
LND+Q +A PLL++AG GSGK I P NI+A+TFT AA
Sbjct: 8 LNDKQKQAVF-TTEGPLLLLAGAGSGKTGVLMHRIAYLINEKHIDPYNIMAITFTNKAAK 66
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++RI +++G A + + TFHS ++ R +K+ + F IY QR +
Sbjct: 67 EMKERITNLIG-ADGNFVWVMTFHSSCVRFLRRFIDKIGFDNNFTIYDSDDQRTLM---- 121
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+KI I++ + RA L ++++ C
Sbjct: 122 -----KKIFKENNINSRVYKE-------RAVLNIISS-----------C----------- 147
Query: 413 VAKASGKTPAEFRKIGD---EIGAA-ILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
K +P E+ K E GAA I E Y L+ NALD+ DLI SV+L P+V
Sbjct: 148 --KNELISPVEYMKSATDRYEKGAARIYEIYQSTLKKNNALDFDDLICRSVELFENCPDV 205
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDS 527
YQ+ ++ I+VDE+QDT+ Q+ L+ +LA + I +VGDDDQSI+ F GA+I S
Sbjct: 206 LDYYQNRFRYIMVDEYQDTNTAQFKLIYLLAQKYKNICVVGDDDQSIYKFRGANIENILS 265
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F F N + I+L +NYRST I++AA+++I++N R K++ TD + G+ I +++ N
Sbjct: 266 FEDKFENVEVIKLEQNYRSTGNILDAANAVIKNNRGRKN-KSLWTDGATGANIELRQFAN 324
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
DA+ FII I A++ ++ A+LYR ++ + +P+ + GV
Sbjct: 325 ADAEADFIIKDIKAKAND------NFKDFAVLYRTNAQSRLLEERCVTLGVPYQLVGGVN 378
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH--IDKISTIRKCS 704
FY++K ++ ++A L+T G DD R+ KR I I K++ +
Sbjct: 379 FYQRKEIKDVLAYLKTIANGSDDIALLRIINV--------PKRGIGATTIAKVADYANEN 430
Query: 705 FIS-----AACDIFG-AKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
IS C+ G K + K+ + + E K+ ++ ++AN
Sbjct: 431 VISLYDAMTICENIGIGKAADKIKKF-------IAMIEEFRDKVAKK--------ANIAN 475
Query: 759 MVPQKYLLEQRAVVD--FDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQ 816
M+ + LL++ ++ +D G++ E + ++ L+ D+ + + EE ++
Sbjct: 476 MIEE--LLDKTGYIESLYDEGEIEGESR--KENIEELVNKSVDYEDGELSLFLEEVSLVA 531
Query: 817 DKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
D ID + E N + +TL T+H +KGLE+D V++A E
Sbjct: 532 D-----------IDRMDE------------NADRITLMTLHGAKGLEFDTVYLAGMEEGL 568
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLK 933
P + E +EEERRL YV +TRA+K L + M++ + SRF+
Sbjct: 569 FP--SAMSSITRE---DLEEERRLAYVGITRAKKNLILTSAKQRMINGETRYSLLSRFVN 623
Query: 934 EIPHHLREVQAEQSVQDQHENIPEGTAQFTINLPRE 969
EIP L ++ + D + + T + LP E
Sbjct: 624 EIPRDL----LDKHILDTEKKYTQRTYSYEEALPWE 655
>gi|407978244|ref|ZP_11159077.1| ATP-dependent DNA helicase [Bacillus sp. HYC-10]
gi|407415251|gb|EKF36858.1| ATP-dependent DNA helicase [Bacillus sp. HYC-10]
Length = 740
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 220/740 (29%), Positives = 332/740 (44%), Gaps = 149/740 (20%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ LND Q EA PLL++AG GSGK ++P NILA+TFT
Sbjct: 9 LEGLNDAQKEAVKA-TDGPLLLMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNK 67
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+ +I+G A ++ ISTFHS +++ R +++ F I Q I
Sbjct: 68 AAREMRERVQAILGPG-ADDIWISTFHSMCVRILRRDIDRIGVNRNFSILDTSDQLSVI- 125
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ IL + I G S+SS K +
Sbjct: 126 --------KNILKERNIDPKKFDPRSILG---------------SISSAK---------N 153
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ A+ KT +F D++ + + +Y L +LD+ DLI +++L PEV
Sbjct: 154 ELIDAEEYAKTAGDFY---DQVVSDVYTDYQKRLLKNQSLDFDDLIMMTIRLFERIPEVL 210
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ ++ I VDE+QDT+ QY L+++LA I +VGD DQSI+ + GADI+ SF
Sbjct: 211 EHYQRKFQYIHVDEYQDTNRAQYMLVKLLAQRFQNICVVGDSDQSIYRWRGADITNILSF 270
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + I L +NYRST+ I+ AA+++IQ+N R + KN+ T+N G+KI NE
Sbjct: 271 EKDYPTSQVILLEQNYRSTKRILHAANTVIQNNANR-KPKNLWTENDEGAKIAYYRADNE 329
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVAF 647
+ F+ KI + +G + +AILYR +V + + I +NI G F
Sbjct: 330 FGEGQFVAGKIRQLHQSGKRKLS---DVAILYRTNAQSRVIEETLMKANIQYNIVGGTKF 386
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID--HIDKISTIRKCSF 705
Y +K ++ I+A LR DD + R+ KR I +DKI+ + +
Sbjct: 387 YDRKEIKDILAYLRLVANPDDDISFMRIVNV--------PKRGIGATSVDKIAAYAEMND 438
Query: 706 IS-----AACDIFG-----AKISGTFKR--SQLTQGRKVL----LTLEMISKLVRREP-S 748
+S D G A FK+ Q+T ++ L LT E++ K RE
Sbjct: 439 LSMFEALGQVDFIGLSARAANALDEFKQLIDQMTNMQEYLSVTELTEEILEKTGYREALK 498
Query: 749 ISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAA 808
I I + Q L ++ +FLS T
Sbjct: 499 IEKTIEA-----------------------------------QSRLENIDEFLSV--TKN 521
Query: 809 KEEGNVDQDKKGCIN--VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDI 866
EE N D+ + L A ID + E E E HD +V L T+H +KGLE+ +
Sbjct: 522 FEEQNEDKSLVTFLTDLALVADIDKLDENEEED-----HD---AVILMTLHAAKGLEFPV 573
Query: 867 VFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMM 919
VF+ E P + +EEERRL YV +TRA ++L++ L+
Sbjct: 574 VFLMGMEEGVFPHSRSLM-----EDAEMEEERRLAYVGITRAEEELYLSSAKMRTLFGRT 628
Query: 920 DANWQLLQPSRFLKEIPHHL 939
+ N + SRF++EIP L
Sbjct: 629 NMNLE----SRFIREIPADL 644
>gi|164687737|ref|ZP_02211765.1| hypothetical protein CLOBAR_01379 [Clostridium bartlettii DSM
16795]
gi|164603511|gb|EDQ96976.1| putative ATP-dependent DNA helicase PcrA [Clostridium bartlettii
DSM 16795]
Length = 746
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 213/741 (28%), Positives = 346/741 (46%), Gaps = 130/741 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++ LN Q EA P+LI+AG GSGK + NILA+TFT
Sbjct: 6 IEMLNPAQREA-VEQTEGPILILAGAGSGKTRVLTTRIGYLMKEKKVKAENILAITFTNK 64
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EMR+R+ + + I+TFHS +++ R K+ F+IY Q +
Sbjct: 65 AANEMRERVDETLNDEDTSAMWITTFHSCCVRILRKSINKIGYNRSFVIYDSSDQVTLVK 124
Query: 350 EAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF-E 407
+ +R L +EK + K I + S + KL +F E
Sbjct: 125 DCLRELNYSEKAMDPKYIIS-----------------------VISNAKDKLINPKQFRE 161
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ D +K+ KI D + Y L+ +ALD+ DLIS +V+L +
Sbjct: 162 KYKNDFSKS---------KIAD-----VYALYQDRLKRNSALDFDDLISKTVELFREHED 207
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFD 526
V Y++ ++ I+VDE+QDTS QY L+++LA H I +VGDDDQSI+ + GADI
Sbjct: 208 VLDFYRNRFRYIMVDEYQDTSRAQYELVRLLAQGHQNICVVGDDDQSIYGWRGADIRNIL 267
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
F +D+ + I+L +NYRST+ I++AA+ LI++N++R + K + ++ G I I+
Sbjct: 268 EFERDYDDVHVIKLEQNYRSTQIILDAANYLIKNNIER-KRKKLWSEKKEGELIKIQLAE 326
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GV 645
E + F+ + I G SY A+LYR + + A +IP+NI+ G
Sbjct: 327 TEVDEAEFVANTISTMVRTGER---SYKDFAVLYRANAQARPVEDALNRAQIPYNIYGGT 383
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSF 705
FY +K ++ ++A LR DD +R+ + + R I+ I+ +++++ S
Sbjct: 384 KFYERKEIKDMVAYLRVIQNPQDDISLKRIIN---VPRRGIGLRTIEKIEDRASLKEESL 440
Query: 706 ISAACDIFG-AKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKY 764
S DI G + IS K S I+ V I + S+ + P
Sbjct: 441 YSVLIDIDGNSDISRKAKAS--------------INGFV----DIMSTFRSLKQIYPASK 482
Query: 765 LLEQRAVVDFDGGKLLNE-DNDLRSVLQYLLADVTDFLST--KFTAAKEEGNVDQDKKGC 821
++E+ V+D G L+E + D Q + ++ +F+S +F + E+ +
Sbjct: 483 MIEK--VMDITG--YLDELEKDKSEESQDRIENLKEFISVAMEFESKNEDTS-------- 530
Query: 822 INVLKAFIDYIS-----ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
L+AF+ ++ E EH + V+L TIH +KGLE+ +VF+ E
Sbjct: 531 ---LEAFLTNVALTSEPNEEEEH--------ADRVSLMTIHSAKGLEFPVVFLTGMEEKL 579
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ------PSR 930
P+ + + T +EEERRL YV +TRA+++LF+ M L SR
Sbjct: 580 FPIAR---AIASMQDTQIEEERRLCYVGITRAKEELFM---TMTGKRTLYGRTNHSVASR 633
Query: 931 FLKEIP----HHLREVQAEQS 947
F++E+P L +VQ E S
Sbjct: 634 FIEELPDDCVERLNKVQKEIS 654
>gi|194015861|ref|ZP_03054476.1| ATP-dependent DNA helicase PcrA [Bacillus pumilus ATCC 7061]
gi|194012216|gb|EDW21783.1| ATP-dependent DNA helicase PcrA [Bacillus pumilus ATCC 7061]
Length = 740
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 212/728 (29%), Positives = 334/728 (45%), Gaps = 125/728 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ LND Q EA PLL++AG GSGK ++P NILA+TFT
Sbjct: 9 LEGLNDAQKEAVKA-TDGPLLLMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNK 67
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+ +I+G A ++ ISTFHS +++ R +++ F I Q I
Sbjct: 68 AAREMRERVQAILGPG-ADDIWISTFHSMCVRILRRDIDRIGVNRNFSILDTSDQLSVI- 125
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ IL + I G S+SS K +
Sbjct: 126 --------KNILKERNIDPKKFDPRSILG---------------SISSAK---------N 153
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ A+ KT ++F D++ + + +Y L +LD+ DLI +++L PEV
Sbjct: 154 ELIDAEEYAKTASDFY---DQVVSDVYTDYQKRLLKNQSLDFDDLIMMTIRLFERIPEVL 210
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ ++ I VDE+QDT+ QY L+++LA I +VGD DQSI+ + GADI+ SF
Sbjct: 211 EHYQRKFQYIHVDEYQDTNRAQYMLVKLLAQRFQNICVVGDSDQSIYRWRGADITNILSF 270
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + + I L +NYRST+ I+ AA+++IQ+N R + KN+ T+N G+KI NE
Sbjct: 271 EKDYPSSEVILLEQNYRSTKRILNAANTVIQNNSNR-KPKNLWTENDEGAKIAYYRADNE 329
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVAF 647
+ F+ KI + +G + + AILYR +V + + I +NI G F
Sbjct: 330 FGEGQFVAGKIHQLHQSGKRKLSDF---AILYRTNAQSRVIEETLLKSNIQYNIVGGTKF 386
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID--HIDKISTIRKCSF 705
Y +K ++ I+A LR DD + R+ KR I +DKI+ + +
Sbjct: 387 YDRKEIKDILAYLRLVANPDDDISFARIVNV--------PKRGIGATSVDKIAAYAEMND 438
Query: 706 IS-----AACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
+S D G + Q +I +L + +S +T + +
Sbjct: 439 LSMFEALGQVDFIGLSARAANALDEFKQ---------LIDQLTNMQDYLS--VTELTEEI 487
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
+K + V+ K + Q L ++ +FLS T EE N D+
Sbjct: 488 LEKTGYREALKVE----KTIEA--------QSRLENIDEFLSV--TKNFEEQNEDKSLVT 533
Query: 821 CIN--VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
+ L A ID + E E E ++++V L T+H +KGLE+ +VF+ E P
Sbjct: 534 FLTDLALVADIDKLDENEEE--------DQDAVILMTLHAAKGLEFPVVFLMGMEEGVFP 585
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQPSRF 931
+ +EEERRL YV +TRA ++L++ L+ + N + SRF
Sbjct: 586 HSRSLM-----EDAEMEEERRLAYVGITRAEEELYLSSAKMRTLFGRTNMNLE----SRF 636
Query: 932 LKEIPHHL 939
++EIP L
Sbjct: 637 IREIPADL 644
>gi|415704999|ref|ZP_11460270.1| UvrD/REP helicase [Gardnerella vaginalis 75712]
gi|388051721|gb|EIK74745.1| UvrD/REP helicase [Gardnerella vaginalis 75712]
Length = 948
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 231/820 (28%), Positives = 375/820 (45%), Gaps = 135/820 (16%)
Query: 185 HQNDNSCTHLNASLESVTTNENIRMDISMD-LAGDMKSSMEKTDTIQTIKT--------- 234
Q+D S + NA + N+++ ++S +AGD S + ++++Q+ +T
Sbjct: 19 EQSDASIS--NAPISDAPINKDMTSEVSASTVAGDF--SAKYSNSVQSSQTAQSSAAAQY 74
Query: 235 -------QNMPD-EYSKYLQSLNDQQLEAACGDMSTP-LLIVAGPGSGKG---------- 275
N+P+ L+ LN QQ +A + P LLI AG GSGK
Sbjct: 75 AQTSAQSSNIPEINPQSLLEGLNPQQSKAV--QYTGPALLIGAGAGSGKTRVLTRRIAWI 132
Query: 276 -----ISPSNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKL 330
PS ILA+TFT AA+EMR+R+ S++G +AK + +STFHS +++ R+H + +
Sbjct: 133 LANRKAWPSQILAITFTNKAAAEMRERLASLIGN-SAKSMWVSTFHSACVKILRAHGDSI 191
Query: 331 ERTSEFLIYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAM 390
S F IY R V+++ +E + +K+ + +L + + S F N +
Sbjct: 192 GLKSGFSIYDSSDCERL----VKIIASELNIDIKKFTPKLLLS-------KISEFKNNLV 240
Query: 391 LFFSMSSFKLCQYNKFERDGMDVAKASGKTPAEFRKIG--DEIGAAILENYNGILRSCNA 448
+ L Y + G V+ AS F G D + AA+ Y L NA
Sbjct: 241 TWQE----NLKNYAPDYKPGASVSGAS-----SFNAAGNADALYAAVYAEYQNRLSVSNA 291
Query: 449 LDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-------- 500
+D+ DLI +VKLL P+V Y+ ++ I+VDE+QDT+ QY L++ LA
Sbjct: 292 VDFDDLIMLTVKLLRQNPQVSAYYKRKFRYILVDEYQDTNHAQYVLIRELAGVDDYSTDS 351
Query: 501 ----------HNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCI 550
+ IT+VGD DQSI++F GADI F +DF + I L +NYRST+ I
Sbjct: 352 TVSPDSTQLPQSSITVVGDSDQSIYAFRGADIRNIQDFEQDFPSATTIMLEQNYRSTQTI 411
Query: 551 VEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASI 610
++AA+++I +N R + K + T GS I+ N + +++ +I A
Sbjct: 412 LDAANAVISNNTNR-KPKKLWTSLGKGSPIVGYVADNAQGEASWVAQEIARLAGEDG--- 467
Query: 611 CSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDD 669
+Y IAI+YR + + A + +P+ + G FY ++ V+ +A L++ DD
Sbjct: 468 VNYSDIAIMYRANSQSRSLEDALIKSGLPYQLVGGTKFYERREVKDALAYLQSIANPDDD 527
Query: 670 GPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKIS---GTFKRS-- 724
RR+ + ++ R I + SF SA I KI+ G R+
Sbjct: 528 VNMRRILN---VPKRGLGARAESQITSYAKENSISFWSALSQI--DKIAEQIGISSRTFN 582
Query: 725 QLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDN 784
L R ++ +L K +PS V N++ + LL+ L E
Sbjct: 583 ALKSFRDLMTSLIDFMKANDSKPS-----KVVENVLNESGLLQD-----------LRESK 626
Query: 785 DLRSVLQYLLADVTDFLSTKFTAAKEEGNV-DQDKKGCINVLKAFIDYISERETEHFRTQ 843
D + + V + + AA+ E N D + G + D ++ Q
Sbjct: 627 DPQDEFR-----VDNLSQLQSVAAEYEQNTPDANVAGFLETTALVAD------SDQLPDQ 675
Query: 844 RHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYV 903
D VTL T+H +KGLE+ +VF+ + P + N+K + EERRL YV
Sbjct: 676 GEDT-GKVTLMTLHTAKGLEYPVVFLTGMEQGTFPHSRCVD---NQK--ELCEERRLAYV 729
Query: 904 AMTRARKKLFILYVMMDANW----QLLQPSRFLKEIPHHL 939
+TRA+K L++ + + W +++Q S+FL EIP L
Sbjct: 730 GITRAKKILYVTWAAERSQWGKSAEMIQ-SQFLDEIPADL 768
>gi|154495304|ref|ZP_02034309.1| hypothetical protein PARMER_04361 [Parabacteroides merdae ATCC
43184]
gi|423722504|ref|ZP_17696680.1| hypothetical protein HMPREF1078_00743 [Parabacteroides merdae
CL09T00C40]
gi|154085228|gb|EDN84273.1| UvrD/REP helicase [Parabacteroides merdae ATCC 43184]
gi|409242349|gb|EKN35112.1| hypothetical protein HMPREF1078_00743 [Parabacteroides merdae
CL09T00C40]
Length = 770
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 217/739 (29%), Positives = 344/739 (46%), Gaps = 133/739 (17%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTT 288
+YL+ LN+ Q EA P L+VAG GSGK G+ P +ILA+TFT
Sbjct: 3 EYLKQLNESQREAVVY-TDGPSLVVAGAGSGKTRVLTYKIAYLLRQGLPPQSILALTFTN 61
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQR--- 345
AA EM+DRI S+ + + L + TFHS ++ RS AE + S F IY +
Sbjct: 62 KAAREMKDRIASLTDERMVRRLWMGTFHSVFSRILRSEAECIGYPSNFTIYDATDSKSLL 121
Query: 346 RAIIEAVRLLENEKI----LVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
R+I++ ++L ++K+ +V RIS NA++ ++K
Sbjct: 122 RSIMKEMQL--DDKVYRPGMVQGRISN-----------------AKNALI-----TYKAY 157
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
+ NK E D+ K P + I + Y + A+D+ DL+ + L
Sbjct: 158 EQNK-ELVQHDI---DSKVP---------LLREIYKRYQNRCQQAGAMDFDDLLLQTNIL 204
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGA 520
P+V ++Y+ ++ ++VDE+QDT+ Q+ ++Q L H RI +VGDD QSI+SF GA
Sbjct: 205 FRDHPDVLEKYRSFFQFVLVDEYQDTNFAQHLIVQRLCEVHRRICVVGDDAQSIYSFRGA 264
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
+I F+ + + +L RNYRST+ IV AA+SLI N K+ K V ++ GSK+
Sbjct: 265 NIDNILQFKNQYPGCRIFKLERNYRSTQNIVNAANSLIHKNTKQIP-KTVYSEKEEGSKV 323
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
I +++ + + KI + Y AILYR ++ + A R+R IP+
Sbjct: 324 SICSSYSDYEEGYAVAGKINDMRMQN----YDYADFAILYRTNAQSRILEEALRKRGIPY 379
Query: 641 NIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRV--FKAFLLLEKEEKKRVIDHIDKI 697
I+ G++FY++K V+ +I+ LR + D+ ++RV + A + + K V+ D
Sbjct: 380 KIYGGLSFYQRKEVKDVISYLRLIVNPHDEEAFKRVINYPARGIGDTTLNKLVVAATD-- 437
Query: 698 STIRKCSFISAACDIFGAKI---SGTFKR----SQLTQG---RKVLLTLEMISKLVRREP 747
S + D G + +GT K+ +L G R V L+ E I+ V +E
Sbjct: 438 ---HNVSLWTVLNDPIGYALPVNNGTAKKLSDFRELISGFIERNVKLSAEEIAAAVVKES 494
Query: 748 SISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTA 807
I + L + R+V E + LQ LL + +F +
Sbjct: 495 GIVST------------LFQDRSV----------EGISKQENLQELLKGIAEFCEIR--- 529
Query: 808 AKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNE---NSVTLTTIHQSKGLEW 864
+EEG + D++S E Q +D E N VT+ T+H +KGLE+
Sbjct: 530 -REEGTEH----------VSLADFLS--EVSLLTDQDNDKEEQANKVTMMTVHAAKGLEF 576
Query: 865 DIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDA 921
VFV E P + + +VEEERRL YVA+TRA + + + +
Sbjct: 577 RNVFVVGLEEDLFP-----SAMSKDNPRAVEEERRLFYVAITRAEENCVLTHARSRYRNG 631
Query: 922 NWQLLQPSRFLKEI-PHHL 939
+ PSRFLK+I P ++
Sbjct: 632 QSTMCSPSRFLKDIDPKYI 650
>gi|421769485|ref|ZP_16206192.1| ATP-dependent DNA helicase UvrD/PcrA [Lactobacillus rhamnosus
LRHMDP2]
gi|421772235|ref|ZP_16208891.1| ATP-dependent DNA helicase UvrD/PcrA [Lactobacillus rhamnosus
LRHMDP3]
gi|411183803|gb|EKS50938.1| ATP-dependent DNA helicase UvrD/PcrA [Lactobacillus rhamnosus
LRHMDP3]
gi|411184616|gb|EKS51748.1| ATP-dependent DNA helicase UvrD/PcrA [Lactobacillus rhamnosus
LRHMDP2]
Length = 750
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 213/725 (29%), Positives = 331/725 (45%), Gaps = 110/725 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ +ND+Q EA P+LI+AG GSGK ++P NILA+TFT
Sbjct: 7 LKGMNDKQAEAVLA-TEGPVLIMAGAGSGKTRVLTHRIAYLVEEKNVNPWNILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+G +V A+++ +STFH+ +++ R +KL F I +Q
Sbjct: 66 AAREMRERVGKLVDPEIARDIWVSTFHALCVRILRRDIDKLGYNRAFTIADPAEQ----- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER- 408
+ +VK I D F ++ + S K E
Sbjct: 121 ----------LTLVKHILAD---------------FNLDPKRYDPKSILGAISGAKNELI 155
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D + +P F K A + Y LRS ALD+ DLI ++ L PE
Sbjct: 156 DPQTYSDEQANSP--FTKTV----AQVYAEYQKRLRSDQALDFDDLIMQTIVLFEKDPET 209
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDS 527
YQ ++ I VDE+QDT+ QY L+ +LA ++ + +VGD DQSI+ + GA++
Sbjct: 210 LGFYQRKFRYIHVDEYQDTNEAQYRLVHMLAEGYHNLCVVGDADQSIYGWRGANMQNILD 269
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F+KD+ + I L +NYRST+ I+ AA+ +I++N+ R Q K + T+N+ G KI +
Sbjct: 270 FKKDYPKAQVILLEQNYRSTKTILSAANDVIKNNLNR-QAKTLWTENATGDKITYYRAQS 328
Query: 588 EDAQCAFIIDKI-LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
E + F+I +I E A N YG AILYR + + AF + IP+ + G
Sbjct: 329 ETDEAIFVIRRIEAEMAQNH----RKYGDFAILYRTNAQSRAIEEAFVKSNIPYKMVGGH 384
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH-----IDKISTI 700
FY +K +R +A R + DD + R+ E KR I + ++ +
Sbjct: 385 KFYDRKEIRDALAYFRLVVNPADDMSFNRIVN--------EPKRGIGNTSVAKLEAFANQ 436
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
S + AA + + ISG R L + K MI +L +R ++ A +
Sbjct: 437 HDWSLLEAAANAELSPISGK-ARGNLAEFGK------MIQRLGQRRKDLNVTEMMQAILD 489
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
YL RA + + +L SV Q F A + N D D
Sbjct: 490 DSGYLGALRAANTLEAETRVENLEELLSVTQ------------GFDARYQPENEDSD--- 534
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
F+D+++E + + ++ VTL T+H +KGLE+ +VF+ E PL
Sbjct: 535 ------IFVDFLAELALLSDQDEVEEDAQEVTLMTLHAAKGLEFPVVFLVGMEEGLFPLS 588
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPH 937
A++E +EEERRL YV +TRA++KL++ M+ Q SRF++EI
Sbjct: 589 R---AAMDE--GELEEERRLAYVGITRAKQKLYLTNAYARMLYGQRQNNPASRFIEEIDP 643
Query: 938 HLREV 942
L ++
Sbjct: 644 ELLDI 648
>gi|379705361|ref|YP_005203820.1| ATP-dependent DNA helicase PcrA [Streptococcus infantarius subsp.
infantarius CJ18]
gi|374682060|gb|AEZ62349.1| ATP-dependent DNA helicase PcrA [Streptococcus infantarius subsp.
infantarius CJ18]
Length = 775
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 212/735 (28%), Positives = 338/735 (45%), Gaps = 126/735 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 10 LNGMNDKQAEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLINEKFVNPWNILAITFTNK 68
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R ++ ATA L I+TFHS +++ R A+ + F I G+QR +
Sbjct: 69 AAREMRERAMAL-NPATADTL-IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM- 125
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+L+N L D RA L + S + L +E
Sbjct: 126 --KRILKN-------------LNLDPKKWNERAILGTI------SNAKNDLLDEVAYENQ 164
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D+ +I A + Y LR A+D+ DLI +++L P+V
Sbjct: 165 AGDMYT--------------QIVAKCYKAYQAELRQSEAMDFDDLIMLTLRLFDQNPDVL 210
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 211 AYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 270
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+++I +N R + K + T N+ G +I+ +E
Sbjct: 271 EKDYPEAKVVMLEENYRSTKKILQAANAVINNNRNR-RPKKLWTQNTDGEQIVYYRARDE 329
Query: 589 DAQCAFI---IDKIL-EHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
+ F+ ID I+ E N + A+LYR + + A + IP+ +
Sbjct: 330 REEAVFVASTIDNIVREQGKN-------FKDFAVLYRTNAQSRTIEEALLKSNIPYTMVG 382
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKIST 699
G FY +K +R +I+ L D+ Y R+ E K+ V ++ I +
Sbjct: 383 GTKFYSRKEIRDVISYLNVIANTADNISYERIV-------NEPKRGVGPGTLEKIRDFAN 435
Query: 700 IRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANM 759
++ S + A+ +I + + G + Q L L M + + S++ ++ +V
Sbjct: 436 LQNMSLLDASANIMLSGVKG-----KAAQAVWDLANLLMNLRTDLDKYSVTELVETV--- 487
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
L++ +D L N L S Q + ++ +FL+ + + + +D+
Sbjct: 488 ------LDKTGYLD-----ALRVQNTLES--QARIENIKEFLTVTKNFDENQDDAPEDES 534
Query: 820 GCINVLKAFID---YISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
G I+ L F++ I++ + + T VTL T+H +KGLE+ IVF+ E
Sbjct: 535 G-IDKLSRFLNDLALIADTDDGNAETA------EVTLMTLHAAKGLEFPIVFLIGMEEGV 587
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPS 929
PL E +EEERRL YV +TRA + LF+ +AN + L +PS
Sbjct: 588 FPLSR-----AAEDQDELEEERRLAYVGITRAEQLLFV----TNANTRTLFGKTSYNRPS 638
Query: 930 RFLKEIPHHLREVQA 944
RF++EI L + Q
Sbjct: 639 RFIREIDDELLQYQG 653
>gi|374338036|ref|YP_005094746.1| ATP-dependent DNA helicase UvrD/PcrA [Streptococcus macedonicus
ACA-DC 198]
gi|372284146|emb|CCF02394.1| ATP-dependent DNA helicase UvrD/PcrA [Streptococcus macedonicus
ACA-DC 198]
Length = 771
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 208/731 (28%), Positives = 337/731 (46%), Gaps = 118/731 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDKQAEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R ++ ATA L I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMRERAMAL-NPATADTL-IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+L+N L D RA L + S + L +E
Sbjct: 121 --KRILKN-------------LNLDPKKWNERAILGTI------SNAKNDLLDEVAYENQ 159
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D+ +I A + Y LR A+D+ DLI +++L P+V
Sbjct: 160 AGDMYM--------------QIVAKCYKAYQEELRRSEAMDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LASH I +VGD DQSI+ + GAD+ F
Sbjct: 206 AYYQQRYQYIHVDEYQDTNHAQYQLVKLLASHFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+++I +N R + K + T N+ G +I+ +E
Sbjct: 266 EKDYPEAKVVLLEENYRSTKKILQAANAVINNNRNR-RPKKLWTQNTDGEQIVYYRARDE 324
Query: 589 DAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHG 644
+ F+ ID I+ ++ A+LYR + + A + IP+ + G
Sbjct: 325 REEAVFVASTIDNIVREEGK------NFKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGG 378
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTI 700
FY +K +R +I+ L D+ Y R+ E K+ V ++ I + +
Sbjct: 379 TKFYSRKEIRDVISYLNVIANTADNISYERIV-------NEPKRGVGPGTLEKIRDFANM 431
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
+ S + A+ +I +SG +G+ ++ + L++ + + +V +V
Sbjct: 432 QNMSLLDASANIM---LSG-------VKGKAAQAVWDLANLLMKLRDDLDQM--TVTELV 479
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
+ +L++ +D L N L S Q + ++ +FL+ + + +D+ G
Sbjct: 480 --EAVLDKTGYLD-----ALRVQNTLES--QARIENIEEFLTVTKNFDDNQEDAPEDESG 530
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
+ + D +T+ T+ + VTL T+H +KGLE+ IVF+ E PL
Sbjct: 531 IDKLSRFLNDLALIADTDDGDTETAE----VTLMTLHAAKGLEFPIVFLIGMEEGVFPLS 586
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLK 933
E +EEERRL YV +TRA + LF+ +AN + L +PSRF++
Sbjct: 587 R-----AAEDQDELEEERRLAYVGITRAEQLLFV----TNANTRTLFGKTGYNRPSRFIR 637
Query: 934 EIPHHLREVQA 944
EI L + Q
Sbjct: 638 EIDDELLQYQG 648
>gi|383788732|ref|YP_005473301.1| ATP-dependent DNA helicase PcrA [Caldisericum exile AZM16c01]
gi|381364369|dbj|BAL81198.1| ATP-dependent DNA helicase PcrA [Caldisericum exile AZM16c01]
Length = 694
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 209/714 (29%), Positives = 331/714 (46%), Gaps = 114/714 (15%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTT 288
YL LN Q+EA + PLL+ AG GSGK I PS ILA+TFT
Sbjct: 5 YLNDLNSAQIEAVTY-IEGPLLVYAGAGSGKTKVITYKIAYLIDAISIRPSQILAVTFTN 63
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA EM++R I+G+ K+L I TFHS ++ R + L F I
Sbjct: 64 KAAQEMKERTEHIIGEEI-KDLFIGTFHSICAKILRREIKFLGYKENFTI---------- 112
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
L E++ V+K I D L D + ++ ++ Y +
Sbjct: 113 -----LDEDDSTNVIKDIMKD-LNLDPKY-----------------INPNEIKDY--ISK 147
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
M++ AS T +++ +++ + I + Y ILR NALD+ DLI ++KL V
Sbjct: 148 AKMNLIDASKFTYSDY---FEQVVSKIYKRYEKILRENNALDFDDLIMLTIKLFQENEYV 204
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDS 527
YQ ++ ++VDE+QD + MQY L++IL R T+VGDDDQSI+SF GA D
Sbjct: 205 LHYYQTKFRHVLVDEYQDVNRMQYELIKILTEKTRRFTLVGDDDQSIYSFRGASSEFIDR 264
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
+DF + K ++L RNYRS + I++ A+ LI+HN +R + K + +D + I E +
Sbjct: 265 IYEDFPDLKVVKLERNYRSPQEILDIANKLIKHNKRRTE-KELFSDIHIENAISFYEALD 323
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
E + F+++KI S AILYR + F+ + IP+ I G
Sbjct: 324 ELDEARFVVNKI---ESLKEEKGYKNKDFAILYRTNFQSRAFEEYLIQEGIPYQVIGGQK 380
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFI 706
FY + ++ IIA L D+ ++R+ + ++ ++ I+ ++K++ + S
Sbjct: 381 FYGRAEIKDIIAYLTLINNPNDNISFKRIVN---IPPRKIGEKTIEELEKVAEEKGKSLF 437
Query: 707 SAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLL 766
+ + K S K + + K L L L R + V++ V + KYL
Sbjct: 438 ESIQEFLLIKESKPLK--EFYELIKELQELSQTQPLPR---FVEEVVSKVKYI---KYLQ 489
Query: 767 EQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDF--LSTKFTAAKEEGNVDQDKKGCINV 824
E+ ED++ R + +V +F + FT E+ N+ +
Sbjct: 490 EK-----------FKEDSEER------IGNVKEFENMVINFTRETEDANL-----SSLLT 527
Query: 825 LKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFN 884
+ I I E + NE+ V+L T+H +KGLE+ +VF+ E +P
Sbjct: 528 QISLITSIDEAK----------NEDRVSLMTLHAAKGLEFPVVFLVGLEEGLLPHFRSL- 576
Query: 885 GAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQP---SRFLKEI 935
E +EEERRL YV +TRA++KLF+ Y + + + L P SRFL+EI
Sbjct: 577 ----ETTKDIEEERRLCYVGITRAKEKLFLTYALRRSKFGSLNPTKTSRFLQEI 626
>gi|425747082|ref|ZP_18865100.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii WC-323]
gi|425484242|gb|EKU50651.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii WC-323]
Length = 679
Score = 230 bits (586), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 211/751 (28%), Positives = 353/751 (47%), Gaps = 116/751 (15%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LND+QLEA + PLL++AG GSGK GI I AMTFT AA
Sbjct: 7 LNDKQLEA-MKYVQGPLLVLAGAGSGKTSVITRKVAFLVQQCGIPAYRITAMTFTNKAAR 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G ++ + AK L++STFH+F L L R + L + F +I++A
Sbjct: 66 EMKERVGKLLSREEAKGLSVSTFHTFGLNLLRLELKHLPLKNNF----------SILDAD 115
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
KRI D++ D G L A +S +K + +
Sbjct: 116 D---------CKRILMDLMQRDNLSGAESKELL---AKAMKKISDWK---------NDLI 154
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
V + + T + D A + + Y LR+ NA+D+ DLI +LL EV ++
Sbjct: 155 VPEQAHST---CETVEDVQFAHLYQLYERNLRAYNAVDFDDLIVMPTRLLQENAEVRDKW 211
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY+L+++L + T VGDDDQSI+++ GA ++D
Sbjct: 212 QNRVRYLLVDEYQDTNTAQYTLVKLLVGVMGQFTAVGDDDQSIYAWRGAKPENMALLKED 271
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F N K I+L +NYRST I++AA+++I++N K + +D HG I + C N+D +
Sbjct: 272 FHNLKVIKLEQNYRSTSRILKAANAVIENNPHIFD-KKLWSDKGHGESIRVITCLNDDDE 330
Query: 592 CAFIIDKILEHA-SNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYR 649
++ ++ H NG ++ AILYR +V +T R+ +IP+ + G +F+
Sbjct: 331 AERVVKDLITHKLMNGK----NWKDYAILYRGNFQARVIETQLRQMQIPYKLSGGQSFFA 386
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI--DKISTIRK---CS 704
+ ++ +++ LR + DD + R+ KR I + +K+ + S
Sbjct: 387 RAEIKDVMSYLRLIINPEDDSAFLRIINT--------PKRAIGPVTLEKLGLFAQENTLS 438
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK- 763
++A+ D ++S + TQ + + I+ R + V M+ +
Sbjct: 439 LLTASSD---QRLSMVLPKKAATQLHEF---ADFIATFTRELLDDDEPMPKVRQMINEAG 492
Query: 764 ---YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
Y+ EQ A + K L+ L S +Q LL + TD D D+K
Sbjct: 493 YIDYIREQAATPAQEKTK-LDSIESLYSSIQNLL-NRTD---------------DVDEKN 535
Query: 821 CINVLKAFI--DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
+V++ + D + +++ E ++ + V L T+H +KGLE+ V++ E +P
Sbjct: 536 IESVIRKLVLLDMLEQQQEE-------EDTDKVNLLTLHAAKGLEFPYVYMIGLEEELLP 588
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDAN---WQLLQPSRFLKEI 935
H+ N +E ++EEERRL+YV +TRAR+ L + N + + PSRFL E+
Sbjct: 589 --HK-NSIASE---TIEEERRLMYVGITRARQGLTLTLAEQRKNGGQMRQMTPSRFLDEM 642
Query: 936 PHHLREVQAEQSVQDQHENIPEGTAQFTINL 966
P E + + + E Q+ NL
Sbjct: 643 PQDDLEWHGRKKKLAPNVDPKEQAQQYLANL 673
>gi|331702041|ref|YP_004399000.1| ATP-dependent DNA helicase PcrA [Lactobacillus buchneri NRRL
B-30929]
gi|406027514|ref|YP_006726346.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Lactobacillus
buchneri CD034]
gi|329129384|gb|AEB73937.1| ATP-dependent DNA helicase PcrA [Lactobacillus buchneri NRRL
B-30929]
gi|405126003|gb|AFS00764.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Lactobacillus
buchneri CD034]
Length = 744
Score = 230 bits (586), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 202/725 (27%), Positives = 332/725 (45%), Gaps = 118/725 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L LN Q +A P+LI+AG GSGK I P ILA+TFT
Sbjct: 7 LAGLNKDQKDAVI-HTEGPVLIMAGAGSGKTRVLTHRIAYIIEHNHIMPWRILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+ ++G+ ++ +STFH+ +++ R H + L F I +QR
Sbjct: 66 AAREMRERVSKLLGEG-GNDVWVSTFHALCVRILRRHIDLLGYNKAFTIADTSEQR---- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+VKR+ D+ F RA L
Sbjct: 121 -----------TLVKRVLRDLNIDPKKFD-PRAVL------------------------S 144
Query: 410 GMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+ AK TP F+ D+I A + + Y L+ +LD+ DLI +++L
Sbjct: 145 AISNAKNDLLTPKAFKAQANSAFDQIVADVYDRYQAELKQNQSLDFDDLIMITIQLFDEH 204
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISG 524
P+V + YQD ++ I VDE+QDT+ QY L+ LA NR I +VGD DQSI+ + GA++
Sbjct: 205 PDVLESYQDKFQYIHVDEYQDTNEAQYRLVNTLAKKNRNICVVGDADQSIYGWRGANMQN 264
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
F+KD+ + L +NYRST+ +++AA+S+I HN R KN+ T+N G +I
Sbjct: 265 ILDFKKDYPDAHVTLLEQNYRSTKTVLDAANSVIAHNDNRAD-KNLWTENPKGDQISYYR 323
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E+ + +++ KI E + P +YGS AILYR +V + + IP+ +
Sbjct: 324 GQTENDEARYVVAKIQEEMAK-PKR--NYGSFAILYRTNAQSRVIEETLLKSNIPYTMVG 380
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKIST 699
G FY +K +R ++ L D + RV E K+ + I+ + +
Sbjct: 381 GHKFYDRKEIRDALSYLTLLANPNDSMSFERVI-------NEPKRGIGQASIERLRLFAN 433
Query: 700 IRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTL-EMISKLVRREPSISAVITSVAN 758
+ S + AA ++ A T ++ + + + + T+ E +++L SI+ + + +
Sbjct: 434 DHQWSLLEAAKNVDLANEISTRAKNSIAEFEQTMRTISEKMAQL-----SITEITEEILD 488
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLS-TKFTAAKEEGNVDQD 817
YL +A + Q L ++ +F+S T+ + EG Q
Sbjct: 489 --KSGYLSTLKASKSLEA--------------QTRLENLEEFISVTQKYDEENEGETGQ- 531
Query: 818 KKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
+ ++++S+ + ++ + VTL T+H +KGLE+ +VF+ E
Sbjct: 532 --------QNLVNFLSDLALVSDQDSLEEDNSQVTLMTLHAAKGLEFPVVFLMGMEEGLF 583
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKE 934
PL A +E + ++EERRL YV +TRA++KL+I M+ Q SRF+ E
Sbjct: 584 PLSR---AAADE--SELQEERRLAYVGITRAKEKLYITNAYSRMLYGRRQNNPESRFVNE 638
Query: 935 IPHHL 939
I L
Sbjct: 639 ISPEL 643
>gi|262172724|ref|ZP_06040402.1| ATP-dependent DNA helicase Rep [Vibrio mimicus MB-451]
gi|261893800|gb|EEY39786.1| ATP-dependent DNA helicase Rep [Vibrio mimicus MB-451]
Length = 671
Score = 230 bits (586), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 206/738 (27%), Positives = 360/738 (48%), Gaps = 99/738 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKFVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ +GKA ++ L +STFH+ L + R ++L + F ++
Sbjct: 62 EMKERVAQTLGKAESRGLMVSTFHTLGLNIIRREYKQLGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R +L ++S++K +
Sbjct: 110 ---DQDQMALLKELTEKQL--DGDKDLLR--------LLLSTISNWKNDMLTPLQ----- 151
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
AKA K + ++ A E Y ++S NALD+ DLI V +L + EV Q +
Sbjct: 152 -AKAMAKGEQQ------QLFAHCFELYQKQMQSYNALDFDDLILLPVLVLRSSEEVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L+++L R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F N K I+L +NYRST I+ AA+ LI +N Q K + ++ + G K+ + +NED +
Sbjct: 265 FPNLKLIKLEQNYRSTSRILRAANILIANNPHVYQ-KALFSELAEGEKLKVILANNEDHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +I+ H + Y AILYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AERVTAEIIAHKF---LNRTEYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ ++E ++ + + +R S +A+
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PKREIGPATLEKLGSYANMRGKSLFAASF 437
Query: 711 DI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQR 769
++ +SG L R L I+ R ++ AV + V ++ + +L E
Sbjct: 438 ELGLEQHLSG----RGLDNLRHFTEWLVAIADNAERGNTVEAVRSLVRDIRYEDWLYETS 493
Query: 770 AVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAF 828
A + + +V+D S + A EG N DQ +K LK
Sbjct: 494 ASP---------------KAAEMRMKNVSDLYS--WIVADLEGDNPDQQEK----TLKEV 532
Query: 829 IDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVN 888
+ ++ R+ R + +D+ ++V L T+H SKGLE+ V++ A E +P H+ +++
Sbjct: 533 VQRLTLRDMME-RGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILP--HQ--TSID 587
Query: 889 EKGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAE 945
E+ +VEEERRL+YV +TRA+++L F++ +L++P SRFL E+P E + +
Sbjct: 588 EE--NVEEERRLMYVGITRAQRELTFMVCKERRQFGELIKPSQSRFLDELPQDDIEWEVK 645
Query: 946 QSVQDQHENIPEGTAQFT 963
+ Q E + +G A
Sbjct: 646 KKPVSQEERMVKGQAHIA 663
>gi|346308780|ref|ZP_08850885.1| ATP-dependent DNA helicase PcrA [Dorea formicigenerans 4_6_53AFAA]
gi|345901859|gb|EGX71655.1| ATP-dependent DNA helicase PcrA [Dorea formicigenerans 4_6_53AFAA]
Length = 752
Score = 230 bits (586), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 153/446 (34%), Positives = 235/446 (52%), Gaps = 58/446 (13%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAA 291
+LND+Q EA PLLI+AG GSGK G++P NILA+TFT AA
Sbjct: 6 TLNDKQKEAVF-HTEGPLLILAGAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNKAA 64
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEA 351
+EMR+R+ ++VG + + + +STFHS +++ R H L + F IY Q+ + +
Sbjct: 65 AEMRERVDNLVGFGS-ESIWVSTFHSMCVRILRRHIALLGYDTNFTIYDTDDQKTLMRDV 123
Query: 352 VRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
+LL+ + + +R+ ++ T H N ML + F+L F +
Sbjct: 124 CKLLQIDTKIYKERM---LIGTISH---------AKNEML--TPEEFRLQSGGDFHQ--- 166
Query: 412 DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQE 471
+KI D + E Y LR+ NALD+ DL+ +V+L T +V +
Sbjct: 167 -------------KKIAD-----VYEEYEKQLRANNALDFDDLLLKTVQLFQTQHDVLEY 208
Query: 472 YQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRK 530
YQ+ ++ I+VDE+QDT+ +Q+ L+++LAS + + +VGDDDQSI+ F GADI F K
Sbjct: 209 YQERFRYIMVDEYQDTNGVQFELVRLLASRYQNLCVVGDDDQSIYKFRGADIRNILDFEK 268
Query: 531 DFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDA 590
F I+L +NYRST I+ AA+++I HN R + K + TDN G KI ++
Sbjct: 269 VFTKAAVIKLEQNYRSTANILNAANAVISHNHGR-KDKTLWTDNEDGDKIAFRQFDTAFD 327
Query: 591 QCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFYR 649
+ +I+ I EH G C Y AILYR ++F+ F IP+ I G+ FY
Sbjct: 328 EAEYIVSDIKEHVEKGE---CDYQDNAILYRTNAQSRMFEEKFVTANIPYKIIGGINFYA 384
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRV 675
++ ++ I+A L+T G DD RR+
Sbjct: 385 RREIKDILAYLKTVDNGQDDLAVRRI 410
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 846 DNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAM 905
+N + V L T+H +KGLE+ V++A + P + + +EEERRL YV +
Sbjct: 549 ENSDYVVLMTLHSAKGLEFPRVYLAGMEDGLFP---SYMTVTADDPDELEEERRLCYVGI 605
Query: 906 TRARKKLFILYV---MMDANWQLLQPSRFLKEIPHHL 939
TRA+ +L + M+ Q + SRFLKE+P L
Sbjct: 606 TRAQNELTMTCARKRMVRGETQYNKMSRFLKEVPLEL 642
>gi|387927898|ref|ZP_10130576.1| PcrA [Bacillus methanolicus PB1]
gi|387587484|gb|EIJ79806.1| PcrA [Bacillus methanolicus PB1]
Length = 735
Score = 230 bits (586), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 219/734 (29%), Positives = 335/734 (45%), Gaps = 130/734 (17%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFT 287
K L LN +Q + A PLLI+AG GSGK G++P NILA+TFT
Sbjct: 7 KLLSGLNPEQ-QKAVKAADGPLLIMAGAGSGKTRVLTHRIAYLMVEKGVNPYNILAITFT 65
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM++RI +++G A +E+ ISTFHS +++ R +++ F I Q+
Sbjct: 66 NKAAREMKERIQNLMGGA-GEEIWISTFHSMCVKILRRDIDRIGFNRNFTILDATDQQSV 124
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
I + IL K I G S+SS
Sbjct: 125 I---------KGILKDKNIDPKKFDPRAILG---------------SISS---------- 150
Query: 408 RDGMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
AK P EF K +++ + + Y LR ALD+ DLI +++L
Sbjct: 151 ------AKNELIDPEEFAKTAGGYYEKVVSDVYTEYQKRLRKNQALDFDDLIMTTIQLFK 204
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADI 522
PEV + YQ ++ I VDE+QDT+ QY L+++LA+ + +VGD DQSI+ + GADI
Sbjct: 205 RVPEVLEYYQRKFQYIHVDEYQDTNKAQYMLIKMLAARFKNLCVVGDSDQSIYRWRGADI 264
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
+ SF KD+ N + I L +NYRST+ I+ AA+ +I +N R + KN+ T+N+ G+KI+
Sbjct: 265 ANILSFEKDYPNSQVILLEQNYRSTKRILSAANEVIANNENR-KPKNLWTENAEGNKIVY 323
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI 642
+E A+ F+ KI E +G + IAILYR +V + + I ++I
Sbjct: 324 YRAVSEQAEAQFVAGKIKEMVESGKRRLS---DIAILYRTNAQSRVIEEVLLKSNIEYSI 380
Query: 643 -HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
G+ FY +K ++ I++ LR DD +RV + ++ ID I +
Sbjct: 381 VGGIKFYDRKEIKDILSYLRLIANPDDDISLQRVIN---VPKRGIGSSSIDKIANFAVTH 437
Query: 702 KCSFISA--ACDIFG-----AKISGTFKR--SQLTQGRKVLLTLEMISKLVRREPSISAV 752
S A A D+ G AK + F+ T+ ++ L E++ +++ +
Sbjct: 438 DMSMYQALEAIDMIGLSPKIAKAAAEFRDFIQNYTRMQEYLSVTELVDEVLDK------- 490
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
+ M+ + LLE Q L ++ +FLS T EE
Sbjct: 491 -SGYREMLKAEKLLEA----------------------QSRLENLEEFLSV--TKNFEET 525
Query: 813 NVDQDKKGCIN--VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVA 870
+ D+ + L A ID + E Q+ D SV L T+H +KGLE+ +VF+
Sbjct: 526 SEDKSLIAFLTDLALVADIDSLDE------DGQKSD---SVVLMTLHSAKGLEFPVVFLI 576
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD---ANWQLLQ 927
E P +EEERRL YV +TRA ++L+I M ++
Sbjct: 577 GMEEGVFPHSRSLMEE-----AEMEEERRLAYVGITRAEEELYITNAQMRTLFGQTKMNP 631
Query: 928 PSRFLKEIPHHLRE 941
SRF+KEIP L E
Sbjct: 632 ESRFIKEIPDDLLE 645
>gi|419779400|ref|ZP_14305276.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis SK10]
gi|383186428|gb|EIC78898.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis SK10]
Length = 763
Score = 230 bits (586), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 213/732 (29%), Positives = 340/732 (46%), Gaps = 121/732 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R + ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYGL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R+ L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERSILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +II ++E
Sbjct: 266 EKDYPNAKVVLLEENYRSTKTILQAANDVIKNNKNR-RPKNLWTQNADGEQIIYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+ I E G + + A+LYR + + A + IP+ + G F
Sbjct: 325 QDEAVFVAKTIDEL---GRSQNFLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRK 702
Y +K +R IIA L D+ + R+ E KR ++ I + ++
Sbjct: 382 YSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRGFANMQD 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ +I + I G +S +L E + +L +I+ ++ +V
Sbjct: 434 MSMLDASANIMLSGIKGKAAQSIWDFANMILDLREKLDQL-----TITELVEAV------ 482
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
LE+ +D +LN L S + + ++ +FLS T ++ Q+++ +
Sbjct: 483 ---LEKTGYID-----ILNAQATLESKAR--VENIEEFLSV--TKNFDDNPDSQEEETGL 530
Query: 823 NVLKAFID---YISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
+ L F++ I++ ++ T + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 531 DKLSRFLNDLALIADTDSSSQET------SEVTLMTLHAAKGLEFPVVFIIGMEENVFPL 584
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFL 932
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 585 SR-----AAEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFI 635
Query: 933 KEIPHHLREVQA 944
EI L E Q
Sbjct: 636 NEISSDLIEYQG 647
>gi|307244600|ref|ZP_07526704.1| putative ATP-dependent DNA helicase PcrA [Peptostreptococcus
stomatis DSM 17678]
gi|306491981|gb|EFM64030.1| putative ATP-dependent DNA helicase PcrA [Peptostreptococcus
stomatis DSM 17678]
Length = 787
Score = 230 bits (586), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 199/706 (28%), Positives = 335/706 (47%), Gaps = 95/706 (13%)
Query: 263 PLLIVAGPGSGKG---------------ISPSNILAMTFTTAAASEMRDRIGSIVGKATA 307
P+LI+AG GSGK + P+NILA+TFT AA+EMR+R+ +I+G+ +
Sbjct: 20 PVLILAGAGSGKTKVLTTRIAYLVEDKQVMPANILAITFTNKAANEMRERVENIIGE-NS 78
Query: 308 KELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVRLLENEKILVVKRIS 367
+++ ISTFHS +++ R K+ F+IY Q + +VK
Sbjct: 79 RDMWISTFHSCCVRILRKDINKIGYNRSFVIYDASDQ---------------LTLVKDCL 123
Query: 368 TDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDVAKASGKTPAEFRKI 427
++ D F + Y + AK +TP EF +
Sbjct: 124 KELNLDDKKF------------------EPKSIISY-------ISSAKDKLQTPKEFARE 158
Query: 428 --GDEIGAAILENY----NGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIV 481
GD + I E Y + +LR+ ALD+ DLI +V+LL + +V Y+ +K I+V
Sbjct: 159 AEGDIWLSKIAEVYAIYQDRLLRNS-ALDFDDLIVKTVELLQSNEDVLNFYRGKFKYIMV 217
Query: 482 DEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRL 540
DE+QDTS QY L+++LA H I +VGDDDQSI+ + GADI F KD+ + ++L
Sbjct: 218 DEYQDTSRAQYQLIKMLAQGHQNICVVGDDDQSIYGWRGADIRNILEFEKDYDDVFVVKL 277
Query: 541 TRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKIL 600
+NYRST+ I++ A+ LI +NV+R + K + +D G + IK NE + +++ ++I
Sbjct: 278 EQNYRSTQPILDTANHLIANNVERKK-KRLWSDKKEGQPVKIKLLRNEVEEASYVAEEIY 336
Query: 601 EHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRKKVVRAIIAM 659
H+ S Y A+LYR + + A +IP++I+ G FY +K ++ ++A
Sbjct: 337 NHSMETGRSFEDY---AVLYRANAQARAIEDALNRFQIPYSIYGGTKFYERKEIKDLLAY 393
Query: 660 LRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKISG 719
LR + DD +RV + + R I+ ++ +++ K S S D+
Sbjct: 394 LRIIVNPQDDISVKRVIN---VPRRGIGLRTIEKLEDRASLMKESVYSVILDVDNNSDIS 450
Query: 720 TFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKL 779
T + + + L L I + S S ++ V +M + LE+ +
Sbjct: 451 TKAKKSINE----FLDLISIFRTFVDAYSPSQLVEKVLDMTGYIHELEE----------I 496
Query: 780 LNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEH 839
+ ++ +L++ D D L + A E N D L+ F+ IS +
Sbjct: 497 VAKNQNLQNGKAEDAQDRIDNLREFISIAIEYENSDL-NNEEEKNLENFLATIS--LSSD 553
Query: 840 FRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERR 899
+ + + V++ T+H SKGLE+ +VF+ E P+ + + + +EEERR
Sbjct: 554 VADEEEEGLSKVSMMTMHSSKGLEFPVVFIVGMEENIFPIARAISSMSD---SDIEEERR 610
Query: 900 LLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHHLREV 942
L YV +TRA + L++ +V + + SRFL E+P ++
Sbjct: 611 LCYVGITRAMRDLYLTHVATRTLYGKTSVNMKSRFLGELPEETTQI 656
>gi|295702475|ref|YP_003595550.1| ATP-dependent DNA helicase PcrA [Bacillus megaterium DSM 319]
gi|294800134|gb|ADF37200.1| ATP-dependent DNA helicase PcrA [Bacillus megaterium DSM 319]
Length = 749
Score = 230 bits (586), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 212/721 (29%), Positives = 334/721 (46%), Gaps = 103/721 (14%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFT 287
K L LN QQ EA PLL++AG GSGK ++P NILA+TFT
Sbjct: 15 KLLTGLNPQQQEA-VKTTDGPLLLMAGAGSGKTRVLTHRIAFLMAEKEVAPWNILAITFT 73
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EMR+R+ +IVG A+++ ISTFHS +++ R +++ F I
Sbjct: 74 NKAAREMRERVSNIVG-GVAEDIWISTFHSMCVRILRRDIDRIGFNRNFTI--------- 123
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
L +++ V+K I D F L S+SS K
Sbjct: 124 ------LDSTDQLSVIKNILKDQNIDPKKFD---------PRSLLGSISSAK-------- 160
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ + VA+ KT A +E+ + + + Y L+ ALD+ DLI +++L PE
Sbjct: 161 -NELKVAEEFDKTAA---GPYEEVVSKVYKEYEKRLKKNQALDFDDLIMTTIQLFKRVPE 216
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFD 526
V YQ ++ I VDE+QDT+ QY L+++LA+ + +VGD DQSI+ + GADI+
Sbjct: 217 VLTYYQRKFQYIHVDEYQDTNHAQYMLVRLLAARFENVCVVGDSDQSIYRWRGADITNIL 276
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
SF KD+ K I L +NYRST+ I+ AA+ +I +N+ R ++KN+ T+N G KI +
Sbjct: 277 SFEKDYPKAKTILLEQNYRSTKTILAAANGVIANNMNR-KVKNLWTENDEGQKIYHYQAM 335
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGV 645
+E + F+ KI E +G Y AILYR +V + + I + I G+
Sbjct: 336 SEHDEAQFVARKIKEAVDSGKR---KYSDFAILYRTNAQSRVMEEVLLKSNINYTIVGGI 392
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSF 705
FY +K ++ ++A LR DD R+ + ++ +D + + S
Sbjct: 393 KFYDRKEIKDLLAYLRLIANQDDDISLARIVN---VPKRGVGATSVDKVANYGNVHDISI 449
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLE-MISKLVRREPSISAVITSVANMVPQKY 764
A ++ ++G + K L + MIS L + + + SV +V Q
Sbjct: 450 FKALDEVELMGLTG--------KATKALRDFQSMISNLAQMQDYM-----SVTELVEQ-- 494
Query: 765 LLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINV 824
+LE+ + L + + + Q L ++ +FLS T EE + D+
Sbjct: 495 VLERTGYRE-----ALKVEKTIEA--QSRLENIDEFLSV--TKTFEEASEDKS------- 538
Query: 825 LKAFI-DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
L AF+ D + + + + V L T+H +KGLE+ +VF+ E P
Sbjct: 539 LVAFLTDLALVADIDKLDDEEEEENEQVILMTLHSAKGLEFPVVFLMGMEEGVFPHSRSL 598
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD---ANWQLLQPSRFLKEIPHHLR 940
+ +EEERRL YV +TRA ++L++L M + SRF+ EIP L
Sbjct: 599 F-----EDNEMEEERRLAYVGITRAEQELYLLNAQMRTLFGKTNVNPKSRFIGEIPSELV 653
Query: 941 E 941
E
Sbjct: 654 E 654
>gi|399925824|ref|ZP_10783182.1| UvrD/REP helicase [Myroides injenensis M09-0166]
Length = 778
Score = 230 bits (586), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 208/733 (28%), Positives = 334/733 (45%), Gaps = 132/733 (18%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
Y+ LN+ Q A ++++AG GSGK G+ NILA+TFT
Sbjct: 4 YIDQLNEAQ-RAPVLQKDGAMIVIAGAGSGKTRVLTLRIAYLMHQGVDAFNILALTFTNK 62
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ RI IVG AK L + TFHS ++ R A +L S F IY +R I
Sbjct: 63 AAREMKTRIAQIVGSTEAKNLWMGTFHSVFAKILRLEAARLGYPSNFSIYDSQDSQRLIG 122
Query: 350 EAVRLLENEKIL-----VVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYN 404
+ ++ ++ ++ + V+ RIS+ + SL + A
Sbjct: 123 QIIKEMQLDRDVYKPKEVLNRISS-----------YKNSLITVKAY-------------- 157
Query: 405 KFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLST 464
FE + A A K P +IG+ I +NY A+D+ DL+ + +LL+
Sbjct: 158 -FENPELQEADAMSKKP----RIGE-----IYQNYVERCFKSGAMDFDDLLLKTNELLTL 207
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADIS 523
+P+V +YQD ++ I+VDE+QDT+ QY +++ L+ I +VGDD QSI++F GA+I+
Sbjct: 208 YPDVLAKYQDRFRYILVDEYQDTNHSQYLIVRALSDRFQNICVVGDDAQSIYAFRGANIN 267
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
+F+KD+ N + RL +NYRS+R IVEAA+S+I N + + K V T+N G KI I
Sbjct: 268 NILNFQKDYDNVQTYRLEQNYRSSRNIVEAANSVIDKNKVKLE-KVVWTENPLGPKIKIH 326
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH 643
+ + F+ I E + + AILYR + + A R++ IP+ I+
Sbjct: 327 RSLTDGEEGRFVASTIFEEKMRNQMNNSDF---AILYRTNAQSRAMEDALRKKDIPYRIY 383
Query: 644 -GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKA-----------FLLLEKEEKKR-- 689
G++FY++K ++ +++ LR + D+ RV L + KR
Sbjct: 384 GGLSFYQRKEIKDVLSYLRLIINPKDEEALVRVINYPARGIGATTLDKLTIAANHYKRSI 443
Query: 690 --VIDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLT--LEMISKLVRR 745
V++HIDKI ++T G + LT + M+ +
Sbjct: 444 FEVMEHIDKIDL-------------------------KITAGTRGKLTDFVNMVKAFQAQ 478
Query: 746 EPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKF 805
+ ++ A + V +K L Q D + +N ++ LL + DF+
Sbjct: 479 DQTMDAY--QLTEHVAKKTGLVQELRKDTTPEGITRMEN-----IEELLNGIKDFI---- 527
Query: 806 TAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWD 865
EG + D G L F++ ++ + +++ V L TIH +KGLE+
Sbjct: 528 -----EGQKEVD--GARGSLSEFLEDVA---LATDLDKDTGDDDRVALMTIHLAKGLEFP 577
Query: 866 IVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQL 925
VF E P + + +EEERRL YVA+TRA + ++ Y W
Sbjct: 578 TVFCVGMEEDLFP-----SAMSKSTRSELEEERRLFYVALTRAEHQAYLTYAQSRYRWGK 632
Query: 926 L---QPSRFLKEI 935
L +PS F+ EI
Sbjct: 633 LVDSEPSCFIDEI 645
>gi|297538070|ref|YP_003673839.1| UvrD/REP helicase [Methylotenera versatilis 301]
gi|297257417|gb|ADI29262.1| UvrD/REP helicase [Methylotenera versatilis 301]
Length = 677
Score = 230 bits (586), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 208/718 (28%), Positives = 335/718 (46%), Gaps = 104/718 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L SLN Q +A + PLL++AG GSGK G SP I A+TFT
Sbjct: 2 LNSLNAPQRDA-VKYLDGPLLVLAGAGSGKTRVITQKISYLIDEAGYSPKEIAAITFTNK 60
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G ++ K LTI+TFHS LQ+ R+ A L +F +I+
Sbjct: 61 AAREMQERVGKLMVGKNIKGLTIATFHSLGLQMLRAEASLLGYKPQF----------SIL 110
Query: 350 EAVRLLENEKILVVKRISTDML-TTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
++ ++ KIL D+L TTD S +S +K N F
Sbjct: 111 DSS---DSFKILA------DILATTDKQLLRKTQS----------QISHWK----NGFVN 147
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D AKA+ + A + + Y L++ A+D+ DLI V+L
Sbjct: 148 P--DQAKATAEEELT------HAAAKVYQLYQQTLKAYQAVDFDDLIKLPVELFDEHEAA 199
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDS 527
++Q + +++DE+QDT+A QY L+++L + T VGDDDQ+I+ + GAD+
Sbjct: 200 LNKWQRKLQYLLIDEYQDTNACQYKLVKMLTGVRGQFTAVGDDDQAIYGWRGADVENLRQ 259
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
+DF K I+L +NYRST I+ A+++I +N K + K + +D G I + C +
Sbjct: 260 LTEDFSKLKVIKLEQNYRSTIRILRGANAVIANNPKLFE-KKLWSDLGTGDLIQVSACMS 318
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVA 646
E+A+ +I K+ H Y AILYR ++F+ R KIP+ I G +
Sbjct: 319 EEAEAESVIMKLQAHKFENRTKFLDY---AILYRGNHQARIFEQYLRNHKIPYTISGGQS 375
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIRK 702
F+ K ++ +I+ LR + DD P AF+ KK + ++ + + +++ K
Sbjct: 376 FFDKAEIKDLISYLR-LVANEDDDP------AFIRAATTPKKGIGNTTLERLGEFASLHK 428
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S +AA F QL ++ I + R+P+ V+ + +
Sbjct: 429 ISLFAAA---FEGDFQNDVGNKQLEDLLNFCTYIQKIQECAVRDPA-GEVLNDLLTTIQY 484
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
+ L +D + ++ ++VL D +L+ K A+ E GN + D K +
Sbjct: 485 EAFL-------YDSDEPRAAESKWKNVL-----DFIGWLTKKGEASTEFGN-ETDGKNLL 531
Query: 823 NVLKAFIDYISERETEHFRTQRHDNE-NSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
L + +S E R D E ++V L+T+H +KGLE+ VF+ E +P
Sbjct: 532 E-LTQMVSLMSMLEG------REDGEPDAVKLSTLHAAKGLEFGHVFLIGVEEGILPHRE 584
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMM---DANWQLLQPSRFLKEIP 936
+ V + T +EEERRL+YV +TRA+K L I + Q+ +PSRF+ E+P
Sbjct: 585 SIDLGVTDP-TKIEEERRLMYVGITRAQKSLNISWCKKRKRAGEMQMCEPSRFIAELP 641
>gi|166033310|ref|ZP_02236139.1| hypothetical protein DORFOR_03036 [Dorea formicigenerans ATCC
27755]
gi|166027667|gb|EDR46424.1| ATP-dependent DNA helicase PcrA [Dorea formicigenerans ATCC 27755]
Length = 763
Score = 230 bits (586), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 153/446 (34%), Positives = 235/446 (52%), Gaps = 58/446 (13%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAA 291
+LND+Q EA PLLI+AG GSGK G++P NILA+TFT AA
Sbjct: 17 TLNDKQKEAVF-HTEGPLLILAGAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNKAA 75
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEA 351
+EMR+R+ ++VG + + + +STFHS +++ R H L + F IY Q+ + +
Sbjct: 76 AEMRERVDNLVGFGS-ESIWVSTFHSMCVRILRRHIALLGYDTNFTIYDTDDQKTLMRDV 134
Query: 352 VRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
+LL+ + + +R+ ++ T H N ML + F+L F +
Sbjct: 135 CKLLQIDTKIYKERM---LIGTISH---------AKNEML--TPEEFRLQAGGDFHQ--- 177
Query: 412 DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQE 471
+KI D + E Y LR+ NALD+ DL+ +V+L T +V +
Sbjct: 178 -------------KKIAD-----VYEEYEKQLRANNALDFDDLLLKTVQLFQTQHDVLEY 219
Query: 472 YQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRK 530
YQ+ ++ I+VDE+QDT+ +Q+ L+++LAS + + +VGDDDQSI+ F GADI F K
Sbjct: 220 YQERFRYIMVDEYQDTNGVQFELVRLLASRYQNLCVVGDDDQSIYKFRGADIRNILDFEK 279
Query: 531 DFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDA 590
F I+L +NYRST I+ AA+++I HN R + K + TDN G KI ++
Sbjct: 280 VFTKAAVIKLEQNYRSTANILNAANAVISHNHGR-KDKTLWTDNEDGDKIAFRQFDTAFD 338
Query: 591 QCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFYR 649
+ +I+ I EH G C Y AILYR ++F+ F IP+ I G+ FY
Sbjct: 339 EAEYIVSDIKEHVEKGE---CDYQDNAILYRTNAQSRMFEEKFVTANIPYKIIGGINFYA 395
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRV 675
++ ++ I+A L+T G DD RR+
Sbjct: 396 RREIKDILAYLKTVDNGQDDLAVRRI 421
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 846 DNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAM 905
+N + V L T+H +KGLE+ V++A + P + + +EEERRL YV +
Sbjct: 560 ENSDYVVLMTLHSAKGLEFPRVYLAGMEDGLFP---SYMTVTADDPDELEEERRLCYVGI 616
Query: 906 TRARKKLFILYV---MMDANWQLLQPSRFLKEIPHHL 939
TRA+ +L + M+ Q + SRFLKE+P L
Sbjct: 617 TRAQSELTMTCARRRMVRGETQYNKMSRFLKEVPLEL 653
>gi|404330691|ref|ZP_10971139.1| ATP-dependent DNA helicase PcrA [Sporolactobacillus vineae DSM
21990 = SL153]
Length = 742
Score = 230 bits (586), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 209/728 (28%), Positives = 340/728 (46%), Gaps = 120/728 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LN +QL+A PLLI+AG GSGK ++P N+LA+TFT
Sbjct: 9 LEGLNPEQLKA-VRHHEGPLLIMAGAGSGKTRVLTHRMAYLMIERDVAPWNLLAITFTNK 67
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ + G ++ +STFHS +++ R ++L + F I Q+
Sbjct: 68 AAKEMKERLAKLAG-PLVNDVWVSTFHSMCVRILRRDIDRLGISRNFSILDSTDQQS--- 123
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
VVK I D L D R+ L ++
Sbjct: 124 ------------VVKHILKD-LNFDPKKFTPRSILGTISG-------------------- 150
Query: 410 GMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
AK KT A+F K DE+ + + Y L +LD+ DLI +VKL
Sbjct: 151 ----AKNVLKTAADFAKTAAGPYDEVVRDVYKEYEKRLLQNQSLDFDDLIMTTVKLFQKV 206
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV YQ ++ I VDE+QDT+ QY L+ ++A + +VGD DQSI+ + GADI
Sbjct: 207 PEVLAYYQKKFQYIHVDEYQDTNRAQYLLVHMMADRFKNLCVVGDSDQSIYGWRGADIHN 266
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ + I+L +NYRST+ I+ AA+ +I++N R + KN+ T+N+ G K+ +
Sbjct: 267 ILSFEEDYPDATVIKLEQNYRSTKMILNAANHVIENNHHR-KPKNLWTENAEGKKVTYYK 325
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG 644
E + ++ KI +G Y +AILYR +V + + IP+ + G
Sbjct: 326 AGTEHDEAYYVAGKIRNLFRDG----FKYSDLAILYRTNAQSRVIEETLLKSSIPYRMVG 381
Query: 645 -VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
+ FY +K ++ I++ L+ DD RV E KR I S++ K
Sbjct: 382 SIKFYERKEIKDILSYLKLIANPDDDISLARVIN--------EPKRGIG----ASSMDKL 429
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
+ + D+ K G Q + +E S L+ + + SV ++V +
Sbjct: 430 ADYAIHADLSLMKAIGEV--GQTGVAARASRKMEEFSDLILNWSKMQEFL-SVTDLVEE- 485
Query: 764 YLLEQRAVVDFDG-GKLLNEDNDLRSVLQYLLADVTDFLST--KFTAAKEEGNVDQDKKG 820
V+D G K L + + + Q L ++ + LS +F A+ E+
Sbjct: 486 -------VLDKSGYRKALKAEKTIEA--QSRLENLDELLSVTKEFEASHED--------- 527
Query: 821 CINVLKAFIDYISE--RETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
K+ I++++E +T+ T+ D +++VTL T+H +KGLE+ +VF+ + P
Sbjct: 528 -----KSLINFLTELALDTDSEDTEDTDVKDTVTLMTLHSAKGLEFPVVFLVGMEDGVFP 582
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFIL--YVMMDANWQLLQP-SRFLKEI 935
L + ++EEERRL YV +TRA+++LF+ + M + P SRF+KEI
Sbjct: 583 LSRSMDDE-----DAMEEERRLAYVGITRAKQRLFLTSAQIRMLYGQTVTNPVSRFVKEI 637
Query: 936 PHHLREVQ 943
P L +++
Sbjct: 638 PDELLDIE 645
>gi|422759052|ref|ZP_16812814.1| DNA helicase II [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
gi|322411887|gb|EFY02795.1| DNA helicase II [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
Length = 772
Score = 229 bits (585), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 208/729 (28%), Positives = 335/729 (45%), Gaps = 114/729 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q +A PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAQA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R ++ K+ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKER--ALALNPATKDTLIATFHSMCVRILRREADHIGYNRNFTIIDTGEQR---- 117
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R+ L + S + L +E
Sbjct: 118 -----------TLMKRI-LKQLNLDPKKWNERSILGTI------SNAKNDLLDEKGYEAQ 159
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D+ +I A + Y LR ALD+ DLI +++L + P+V
Sbjct: 160 AADMYS--------------QIVARCYKAYQEELRRSEALDFDDLIMMTLRLFDSNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 AYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + K + L NYRST+ I++AA+ +I +N R + K + T N+ G +++ ++E
Sbjct: 266 EKDYPDAKVVLLEENYRSTKKILQAANDVINNNRNR-RPKKLWTQNADGEQLVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASIC-SYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
+ F+ I SN + ++ A+LYR + + A + IP+ + G
Sbjct: 325 RDEAVFVASTI----SNMAQELGKNFKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTK 380
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIRK 702
FY +K +R +IA L D+ + R+ E K+ V +D + + +
Sbjct: 381 FYSRKEIRDLIAYLTIVANPADNISFERIV-------NEPKRGVGPGTLDKLRQFAYESD 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + AA ++ + + G +S ++ +I +L R+ IT +A
Sbjct: 434 QSLLEAASNLLMSPLKGKAAQS-------IMDLANIIGQL--RQDLDQMSITDLA----- 479
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
+ LLE+ +D L N L S Q + ++ +FLS K + ++D+ G
Sbjct: 480 EALLEKTGYLDS-----LRLQNTLES--QARIENIEEFLSVTKNFDKSSASQEEDETGVD 532
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ + D +T+ +T+ + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 533 RLGRFLNDLALIADTDDSQTEAAE----VTLMTLHAAKGLEFPVVFLIGMEEGVFPLSR- 587
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
+E +EEERRL YV +TRA + LF M +AN + L +P+RFLKEI
Sbjct: 588 ----ASEDPDELEEERRLAYVGITRAEEVLF----MTNANTRTLFGKSSYNRPTRFLKEI 639
Query: 936 PHHLREVQA 944
L Q
Sbjct: 640 SEELLSYQG 648
>gi|421190094|ref|ZP_15647398.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni AWRIB422]
gi|421192073|ref|ZP_15649342.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni AWRIB548]
gi|399970020|gb|EJO04326.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni AWRIB548]
gi|399970894|gb|EJO05184.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni AWRIB422]
Length = 748
Score = 229 bits (585), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 203/724 (28%), Positives = 339/724 (46%), Gaps = 111/724 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L LND+Q EA PLLI+AG GSGK + P +ILA+TFT
Sbjct: 5 LTGLNDKQKEAVLT-TEGPLLIMAGAGSGKTRVLTHRVAYLVKEKHVDPWSILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++RI +V + A+ + +STFH+ S ++ R +K+ T+ F I QR
Sbjct: 64 AAREMKERIAGLVDEEDARSIWVSTFHALSARILRRDVDKIGFTTSFSILDSSGQR---- 119
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++K + D+ + + S+S+FK N +
Sbjct: 120 -----------TLMKHVLNDLNYDSNQYD---------PKSILASISNFK----NALQTP 155
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ AK + KTP DE + + Y L ++D+ DLI +++L P+V
Sbjct: 156 --NDAKTAAKTPF------DEAVSESYDLYERRLTQSQSMDFDDLIMRTIQLFKQAPDVL 207
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN----RITIVGDDDQSIFSFNGADISGF 525
YQ +K I VDE+QDT+ QY L+++LA+ + + +VGD DQSI+ + GAD++
Sbjct: 208 HYYQHKFKYIHVDEYQDTNGAQYKLVEMLAAGDFGSRNLAVVGDSDQSIYGWRGADMNNI 267
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
+F KDF K + L +NYRST+ I+ AA+ +IQ+N++R + KN+ T+N G+ I
Sbjct: 268 LNFEKDFPGAKTVLLEQNYRSTKHILMAANQVIQNNIER-KPKNLWTNNQDGNLIHYYRA 326
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHG 644
+E + +++ KI G S AIL+R ++F+ F KI + + G
Sbjct: 327 QSESDEAHYVLTKIQAGVKKG----RSLNDFAILFRTNAQSRIFEQVFNSNKIQYTMVGG 382
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIRK 702
F+ +K ++ I+A L+ T +D + R+ E KR I I+K+ +
Sbjct: 383 TRFFERKEIQDIVAYLQLTANLDNDTAFERIVN--------EPKRSIGSSSIEKLRSFAA 434
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
+S I + + RK +++ S + S +T +AN +
Sbjct: 435 KKGLSLTKSIVVLDDESRLSKKAQSNFRKFAQMIQVFS-----DQSHFLSLTELANEIFD 489
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
+ + ++ V + +DL S Q + ++ +FLS + + + D++
Sbjct: 490 QTGIREQYV----------KKDDLES--QSRVENLDEFLS---QTKQFDQDYDEEASETN 534
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
N L +D++ + ++ VTL T+H +KGLE+ +VF+ E P
Sbjct: 535 NPL---VDFLGQTALVSDLDSYDESAGQVTLMTVHAAKGLEFPVVFIVGLEEGIFPSAR- 590
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLF-------ILYVMMDANWQLLQPSRFLKEI 935
A+ E+ +EEERRL YVA+TRA+++L+ +LY +N +PS FL EI
Sbjct: 591 ---AMMER-DGLEEERRLAYVAITRAQEELYLTNAFGRLLYGRAQSN----KPSMFLDEI 642
Query: 936 PHHL 939
L
Sbjct: 643 DDSL 646
>gi|258508010|ref|YP_003170761.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus GG]
gi|385827693|ref|YP_005865465.1| DNA helicase [Lactobacillus rhamnosus GG]
gi|257147937|emb|CAR86910.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus GG]
gi|259649338|dbj|BAI41500.1| DNA helicase [Lactobacillus rhamnosus GG]
Length = 750
Score = 229 bits (585), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 210/728 (28%), Positives = 331/728 (45%), Gaps = 116/728 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ +ND+Q EA P+LI+AG GSGK ++P NILA+TFT
Sbjct: 7 LKGMNDKQAEAVLA-TEGPVLIMAGAGSGKTRVLTHRIAYLVEEKNVNPWNILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+G +V A+++ +STFH+ +++ R +KL F+I +Q
Sbjct: 66 AAREMRERVGKLVDPEIARDIWVSTFHALCVRILRRDIDKLGYNRAFMIADPAEQ----- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER- 408
+ +VK I D F ++ + S K E
Sbjct: 121 ----------LTLVKHILAD---------------FNLDPKRYDPKSILGAISGAKNELI 155
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D + +P F K A + Y LRS ALD+ DLI ++ L PE
Sbjct: 156 DPQTYSDEQANSP--FTKTV----AQVYAEYQKRLRSDQALDFDDLIMQTIVLFEKDPET 209
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDS 527
YQ ++ I VDE+QDT+ QY L+ +LA ++ + +VGD DQSI+ + GA++
Sbjct: 210 LGFYQRKFRYIHVDEYQDTNEAQYRLVHMLAEGYHNLCVVGDADQSIYGWRGANMQNILD 269
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F+KD+ + I L +NYRST+ I+ AA+ +I++N+ R Q K + T+N+ G KI +
Sbjct: 270 FKKDYPKAQVILLEQNYRSTKTILSAANDVIKNNLNR-QAKTLWTENATGDKITYYRAQS 328
Query: 588 EDAQCAFIIDKI----LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-I 642
E + F+I +I EH YG AILYR + + AF + IP+ +
Sbjct: 329 ETDEAIFVIRRIEAEMAEHHR-------KYGDFAILYRTNAQSRAIEEAFVKSNIPYKMV 381
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH-----IDKI 697
G FY +K +R +A R + DD + R+ E KR I + ++
Sbjct: 382 GGHKFYDRKEIRDALAYFRLVVNPADDMSFNRIVN--------EPKRGIGNTSVAKLEAF 433
Query: 698 STIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVA 757
+ S + AA + + ISG + + G+ MI +L +R ++ A
Sbjct: 434 ANQHDWSLLEAAANAELSPISGKARGNLAKFGK-------MIQRLGQRRKDLNVTEMMQA 486
Query: 758 NMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQD 817
+ YL RA + + +L SV Q F A + N D D
Sbjct: 487 ILDDSGYLGTLRAANTLEAETRVENLEELLSVTQ------------GFDARYQPENEDSD 534
Query: 818 KKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
F+D+++E + + ++ VTL T+H +KGLE+ +VF+ E
Sbjct: 535 ---------IFVDFLAELALLSDQDEVEEDAQEVTLMTLHAAKGLEFPVVFLVGMEEGLF 585
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKE 934
PL A++E +EEERRL YV +TRA++KL++ M+ Q SRF++E
Sbjct: 586 PLSR---AAMDE--GELEEERRLAYVGITRAKQKLYLTNAYARMLYGQRQNNPASRFIEE 640
Query: 935 IPHHLREV 942
I L ++
Sbjct: 641 IDPELLDI 648
>gi|423345500|ref|ZP_17323189.1| hypothetical protein HMPREF1060_00861 [Parabacteroides merdae
CL03T12C32]
gi|409223286|gb|EKN16223.1| hypothetical protein HMPREF1060_00861 [Parabacteroides merdae
CL03T12C32]
Length = 770
Score = 229 bits (585), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 217/739 (29%), Positives = 344/739 (46%), Gaps = 133/739 (17%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTT 288
+YL+ LN+ Q EA P L+VAG GSGK G+ P +ILA+TFT
Sbjct: 3 EYLKQLNESQREAVVY-TDGPSLVVAGAGSGKTRVLTYKIAYLLRQGLPPQSILALTFTN 61
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQR--- 345
AA EM+DRI S+ + + L + TFHS ++ RS AE + S F IY +
Sbjct: 62 KAAREMKDRIASLTDERMVRRLWMGTFHSVFSRILRSEAECIGYPSNFTIYDATDSKSLL 121
Query: 346 RAIIEAVRLLENEKI----LVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
R+I++ ++L ++K+ +V RIS NA++ ++K
Sbjct: 122 RSIMKEMQL--DDKVYRPGMVQGRISN-----------------AKNALI-----TYKAY 157
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
+ NK E D+ K P + I + Y + A+D+ DL+ + L
Sbjct: 158 EQNK-ELVQHDI---DSKVP---------LLREIYKRYQNRCQQAGAMDFDDLLLQTNIL 204
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGA 520
P+V ++Y+ ++ ++VDE+QDT+ Q+ ++Q L H RI +VGDD QSI+SF GA
Sbjct: 205 FRDHPDVLEKYRSFFQFVLVDEYQDTNFAQHLIVQRLCEVHRRICVVGDDAQSIYSFRGA 264
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
+I F+ + + +L RNYRST+ IV AA+SLI N K+ K V ++ GSK+
Sbjct: 265 NIDNILQFKNQYPGCRIFKLERNYRSTQNIVNAANSLIHKNTKQIP-KTVYSEKEEGSKV 323
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
I +++ + + KI + Y AILYR ++ + A R+R IP+
Sbjct: 324 SICSSYSDYEEGYAVAGKINDMRMQN----YDYADFAILYRTNAQSRILEEALRKRGIPY 379
Query: 641 NIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRV--FKAFLLLEKEEKKRVIDHIDKI 697
I+ G++FY++K V+ +I+ LR + D+ ++RV + A + + K V+ D
Sbjct: 380 KIYGGLSFYQRKEVKDVISYLRLIVNPHDEEAFKRVINYPARGIGDTTLNKLVVAATD-- 437
Query: 698 STIRKCSFISAACDIFGAKI---SGTFKR----SQLTQG---RKVLLTLEMISKLVRREP 747
S + D G + +GT K+ +L G R V L+ E I+ V +E
Sbjct: 438 ---HNVSLWTVLNDPIGYALPVNNGTAKKLSDFRELISGFIERNVKLSAEEIAAAVVKES 494
Query: 748 SISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTA 807
I + L + R+V E + LQ LL + +F +
Sbjct: 495 GIVST------------LFQDRSV----------EGISKQENLQELLKGIAEFCEIR--- 529
Query: 808 AKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNE---NSVTLTTIHQSKGLEW 864
+EEG + D++S E Q +D E N VT+ T+H +KGLE+
Sbjct: 530 -REEGMEH----------VSLADFLS--EVSLLTDQDNDKEEQANKVTMMTVHAAKGLEF 576
Query: 865 DIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDA 921
VFV E P + + +VEEERRL YVA+TRA + + + +
Sbjct: 577 RNVFVVGLEEDLFP-----SAMSKDNPRAVEEERRLFYVAITRAEENCVLTHARSRYRNG 631
Query: 922 NWQLLQPSRFLKEI-PHHL 939
+ PSRFLK+I P ++
Sbjct: 632 QSTMCSPSRFLKDIDPKYI 650
>gi|171779530|ref|ZP_02920494.1| hypothetical protein STRINF_01375 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282147|gb|EDT47578.1| ATP-dependent DNA helicase PcrA [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 783
Score = 229 bits (585), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 212/735 (28%), Positives = 338/735 (45%), Gaps = 126/735 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 18 LNGMNDKQAEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNK 76
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R ++ ATA L I+TFHS +++ R A+ + F I G+QR +
Sbjct: 77 AAREMRERAMAL-NPATADTL-IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM- 133
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+L+N L D RA L + S + L +E
Sbjct: 134 --KRILKN-------------LNLDPKKWNERAILGTI------SNAKNDLLDEIAYENQ 172
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D+ +I A + Y LR A+D+ DLI +++L P+V
Sbjct: 173 AGDMYT--------------QIVAKCYKAYQAELRQSEAMDFDDLIMLTLRLFDQNPDVL 218
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 219 AYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 278
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+++I +N R + K + T N+ G +I+ +E
Sbjct: 279 EKDYPEAKVVMLEENYRSTKKILQAANAVINNNRNR-RPKKLWTQNTDGEQIVYYRARDE 337
Query: 589 DAQCAFI---IDKIL-EHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
+ F+ ID I+ E N + A+LYR + + A + IP+ +
Sbjct: 338 REEAVFVASTIDNIVREQGKN-------FKDFAVLYRTNAQSRTIEEALLKSNIPYTMVG 390
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKIST 699
G FY +K +R +I+ L D+ Y R+ E K+ V ++ I +
Sbjct: 391 GTKFYSRKEIRDVISYLNVIANTADNISYERIV-------NEPKRGVGPGTLEKIRDFAN 443
Query: 700 IRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANM 759
++ S + A+ +I + + G + Q L L M + + S++ ++ +V
Sbjct: 444 LQNMSLLDASANIMLSGVKG-----KAAQAVWDLANLLMNLRTDLDKYSVTELVETV--- 495
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
L++ +D L N L S Q + ++ +FL+ + + + +D+
Sbjct: 496 ------LDKTGYLD-----ALRVQNTLES--QARIENIKEFLTVTKNFDENQDDAPEDES 542
Query: 820 GCINVLKAFID---YISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
G I+ L F++ I++ + + T VTL T+H +KGLE+ IVF+ E
Sbjct: 543 G-IDKLSRFLNDLALIADTDDGNAETA------EVTLMTLHAAKGLEFPIVFLIGMEEGV 595
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPS 929
PL E +EEERRL YV +TRA + LF+ +AN + L +PS
Sbjct: 596 FPLSR-----AAEDQDELEEERRLAYVGITRAEQLLFV----TNANTRTLFGKTSYNRPS 646
Query: 930 RFLKEIPHHLREVQA 944
RF++EI L + Q
Sbjct: 647 RFIREIDDELLQYQG 661
>gi|330998558|ref|ZP_08322378.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841]
gi|329568156|gb|EGG49975.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841]
Length = 819
Score = 229 bits (585), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 195/717 (27%), Positives = 330/717 (46%), Gaps = 96/717 (13%)
Query: 252 QLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASEMRDR 297
Q A C D P L++AG GSGK G P NILA+TFT AA EM++R
Sbjct: 17 QRRAVCYDKG-PSLVIAGAGSGKTRVLTYKIAYLLEQGYKPWNILALTFTNKAAREMKER 75
Query: 298 IGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVRLLEN 357
I +VG A L + TFHS ++ R A+++ +S F IY R I +R +
Sbjct: 76 IARLVGHELAAGLWMGTFHSVFSRILRKEADEIGFSSHFTIYDQADSRNLIKTVIREMG- 134
Query: 358 EKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDVAKAS 417
+ + T H + L + A L + + +A +
Sbjct: 135 -----LDDKTYKPATIAAHISNAKNRLILPEAYL---------------SDNAVRMADQA 174
Query: 418 GKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWK 477
K P + I Y LR + +D+ DL+ + LL PEV Y D +
Sbjct: 175 AKIP---------MTGEIYLRYMSRLRQADVMDFDDLLLYTYILLKEHPEVCGRYADKFD 225
Query: 478 AIIVDEFQDTSAMQYSLL-QILASHNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYK 536
++VDE+QDT+ Q+ ++ ++ ++ +VGDD QSI+SF GA+I +F + + N K
Sbjct: 226 FVLVDEYQDTNYAQHCIVWELTQKKQQVCVVGDDAQSIYSFRGANIDNILNFTQKYNNAK 285
Query: 537 EIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFII 596
+L +NYRST+ IV AA+SLI HN ++ K+V +D GS + + +++ + ++
Sbjct: 286 LFKLEQNYRSTKTIVSAANSLISHNDRQIP-KDVFSDKEKGSPLHVYSAYSDIEEAEIVV 344
Query: 597 DKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG-VAFYRKKVVRA 655
++I A+ Y AILYR + F+ A R+R +P+ I+G ++FY++K ++
Sbjct: 345 NQI---AALRRKEKMEYDGFAILYRTNAQSRTFEEALRKRGMPYRIYGGLSFYQRKEIKD 401
Query: 656 IIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH--IDKISTIRKCSFISAACDIF 713
+IA R + D+ ++RV R I +DKI ++ +S ++
Sbjct: 402 VIAYCRLAVNPHDEEAFKRVINY--------PARGIGQTTVDKIVSVASTDGVSL-WEVV 452
Query: 714 GAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVD 773
+ ++ T G+ T ++IS + + AV + + ++ + + D
Sbjct: 453 SRPEEHSLPVNKGTMGKLKSFT-DIISGFIEETEQMDAVF--LTQEIIRESGIMREIFQD 509
Query: 774 FDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLK--AFIDY 831
+ ++N +Q LL V +F+S + EEG G + L+ + +
Sbjct: 510 MSPEGMSRQEN-----VQELLNGVQEFVSRRL----EEGQ----STGLSDFLQEVSLLSD 556
Query: 832 ISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKG 891
+ E E+ D ++ VTL TIH +KGLE+ +VF+ E P +
Sbjct: 557 LDEDES--------DEQHKVTLMTIHSAKGLEFPVVFIVGMEENLFP-----SPMAGNSQ 603
Query: 892 TSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSRFLKEIPHHLREVQAE 945
++EEERRL YVA+TRA + ++ + + + PSRFL +I E+ A+
Sbjct: 604 RALEEERRLFYVAITRAERYCYLSFARSRYRFGKTEFSNPSRFLHDIDPRYVEMDAQ 660
>gi|417556148|ref|ZP_12207208.1| putative ATP-dependent DNA helicase PcrA [Gardnerella vaginalis
315-A]
gi|333603172|gb|EGL14594.1| putative ATP-dependent DNA helicase PcrA [Gardnerella vaginalis
315-A]
Length = 951
Score = 229 bits (585), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 231/823 (28%), Positives = 375/823 (45%), Gaps = 138/823 (16%)
Query: 185 HQNDNSCTHLNASLESVTTNENIRMDISMD-LAGDMKSSMEKTDTIQTIKT--------- 234
Q+D S + NAS+ N+++ ++S +AGD S + ++++Q+ +T
Sbjct: 19 EQSDASIS--NASISDAPINKDMTSEVSASTVAGDF--SAKYSNSVQSSQTAQSSAAAQY 74
Query: 235 -------QNMPD-EYSKYLQSLNDQQLEAACGDMSTP-LLIVAGPGSGKG---------- 275
N+P+ L+ LN QQ +A + P LLI AG GSGK
Sbjct: 75 AQTSAQSSNIPEINPQSLLEGLNPQQSKAV--QYTGPALLIGAGAGSGKTRVLTRRIAWI 132
Query: 276 -----ISPSNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKL 330
PS ILA+TFT AA+EMR+R+ S++G +A + +STFHS +++ R+H + +
Sbjct: 133 LANRKAWPSQILAITFTNKAAAEMRERLASLIGN-SANSMWVSTFHSACVKILRAHGDSI 191
Query: 331 ERTSEFLIYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAM 390
S F IY R V+++ +E + +K+ + +L + + S F N +
Sbjct: 192 GLKSGFSIYDSSDCERL----VKIIASELNIDIKKFTPKLLLS-------KISDFKNNLV 240
Query: 391 LFFSMSSFKLCQYNKFERDGMDVAKASGKTPAEFRKIG--DEIGAAILENYNGILRSCNA 448
+ L Y + G V+ AS F G D + AA+ Y L NA
Sbjct: 241 TW----QENLKNYAPDYKPGASVSGAS-----SFNAAGNADALYAAVYAEYQNRLSVSNA 291
Query: 449 LDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-------- 500
+D+ DLI +VKLL P+V Y+ ++ I+VDE+QDT+ QY L++ LA
Sbjct: 292 VDFDDLIMLTVKLLRQNPQVSAYYKRKFRYILVDEYQDTNHAQYVLIRELAGVDDYSTDS 351
Query: 501 -------------HNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRST 547
+ IT+VGD DQSI++F GADI F +DF + I L +NYRST
Sbjct: 352 TVSSVSPDSTQLPQSSITVVGDSDQSIYAFRGADIRNIQDFEQDFPSATTIMLEQNYRST 411
Query: 548 RCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGP 607
+ I++AA+++I +N R + K + T GS I+ N + +++ +I A
Sbjct: 412 QTILDAANAVISNNANR-KPKKLWTSLGKGSPIVGYVADNAQGEASWVAQEIARLAGEDG 470
Query: 608 ASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPG 666
+Y IAI+YR + + A + +P+ + G FY ++ V+ +A L++
Sbjct: 471 ---VNYSDIAIMYRANSQSRSLEDALIKSGLPYQLVGGTKFYERREVKDALAYLQSIANP 527
Query: 667 CDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKIS---GTFKR 723
DD RR+ + ++ R I + SF SA I KI+ G R
Sbjct: 528 DDDVNMRRILN---VPKRGLGARAESQITSYAKENSISFWSALSQI--DKIAEQIGISSR 582
Query: 724 S--QLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLN 781
+ L R ++ +L K +PS V N++ + LL+ L
Sbjct: 583 TFNALKSFRDLMTSLIDFMKANDSKPS-----KVVENVLNESGLLQD-----------LR 626
Query: 782 EDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV-DQDKKGCINVLKAFIDYISERETEHF 840
E D + + V + + AA+ E N D + G + D ++
Sbjct: 627 ESKDPQDEFR-----VDNLSQLQSVAAEYEQNTPDANVAGFLETTALVAD------SDQL 675
Query: 841 RTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRL 900
Q D VTL T+H +KGLE+ +VF+ + P + N+K + EERRL
Sbjct: 676 PDQGEDT-GKVTLMTLHTAKGLEYPVVFLTGMEQGTFPHSRCVD---NQK--ELCEERRL 729
Query: 901 LYVAMTRARKKLFILYVMMDANW----QLLQPSRFLKEIPHHL 939
YV +TRA+K L++ + + W +++Q S+FL EIP L
Sbjct: 730 AYVGITRAKKILYVTWAAERSQWGKSAEMIQ-SQFLDEIPADL 771
>gi|417936104|ref|ZP_12579421.1| ATP-dependent DNA helicase PcrA [Streptococcus infantis X]
gi|343403013|gb|EGV15518.1| ATP-dependent DNA helicase PcrA [Streptococcus infantis X]
Length = 763
Score = 229 bits (585), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 211/729 (28%), Positives = 339/729 (46%), Gaps = 115/729 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R + ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYGL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIIDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R+ L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERSILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + I A E Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDLYTNIVAKCYEAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ ++E
Sbjct: 266 EKDYPDAKVVLLEENYRSTKTILQAANDVIKNNKNR-RPKNLWTQNADGEQIVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+ I E G + + A+LYR + + A + IP+ + G F
Sbjct: 325 QDEAVFVAKTIDEL---GRSQNFLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRK 702
Y +K +R IIA L D+ + R+ E KR ++ I + +++
Sbjct: 382 YSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANLQE 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ +I + I G +S +L E + +L +I+ ++ +V
Sbjct: 434 MSMLDASANIMLSGIKGKAAQSIWDFANMILDLREQLDQL-----TITELVEAV------ 482
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
LE+ VD +LN L S + + ++ +FLS T ++ Q+++ +
Sbjct: 483 ---LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSV--TKNFDDNPESQEEETGL 530
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 531 DKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFIIGMEENVFPLSR- 586
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
+E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+ EI
Sbjct: 587 ----ASEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTSYNRPTRFINEI 638
Query: 936 PHHLREVQA 944
L Q
Sbjct: 639 SSDLLTYQG 647
>gi|419780109|ref|ZP_14305959.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis SK100]
gi|383185268|gb|EIC77764.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis SK100]
Length = 763
Score = 229 bits (585), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 214/732 (29%), Positives = 339/732 (46%), Gaps = 121/732 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +II ++E
Sbjct: 266 EKDYPNAKVVLLEENYRSTKTILQAANDVIKNNQNR-RPKNLWTQNADGEQIIYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+ I E G + A+LYR + + A + IP+ + G F
Sbjct: 325 QDEAVFVAKTIDEL---GRTQNFLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRK 702
Y +K +R IIA L D+ + R+ E KR ++ I + ++
Sbjct: 382 YSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANMQD 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ +I + I G +S +L E + +L +I+ ++ +V
Sbjct: 434 MSMLDASANIMLSGIKGKAAQSIWDFANMILDLREQLDQL-----TITELVEAV------ 482
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
LE+ V+ +LN L S + + ++ +FLS T ++ Q+++ +
Sbjct: 483 ---LEKTGYVE-----ILNAQATLESKAR--VENIEEFLSV--TKNFDDNPDSQEEETGL 530
Query: 823 NVLKAFID---YISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
+ L F++ I++ ++ T + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 531 DKLSRFLNDLALIADTDSGSQET------SEVTLMTLHAAKGLEFPVVFIIGMEENVFPL 584
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFL 932
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 585 SR-----AAEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTSYNRPTRFI 635
Query: 933 KEIPHHLREVQA 944
EI L E Q
Sbjct: 636 NEISSDLLEYQG 647
>gi|365156566|ref|ZP_09352874.1| ATP-dependent DNA helicase pcrA [Bacillus smithii 7_3_47FAA]
gi|363627158|gb|EHL78091.1| ATP-dependent DNA helicase pcrA [Bacillus smithii 7_3_47FAA]
Length = 735
Score = 229 bits (585), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 217/722 (30%), Positives = 336/722 (46%), Gaps = 110/722 (15%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFT 287
K L LN +Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 7 KLLSGLNKEQQEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLMVEKAVNPYNILAITFT 65
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM++R+ ++G A A+E+ ISTFHS +++ R +++ F I Q+
Sbjct: 66 NKAAREMKERVSQLMGGA-AEEVWISTFHSMCVRILRRDIDRIGFNRNFTILDTTDQQSV 124
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
I + IL K + G ++SS K
Sbjct: 125 I---------KGILKDKNLDPKKFDPRSILG---------------TISSLK-------- 152
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ +D S + + + +I E+ E Y LR +LD+ DLI ++ L P+
Sbjct: 153 NELIDPESYSKQAGSYYERIVSEV----YEEYQKRLRKNQSLDFDDLIMTTIHLFQRVPD 208
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFD 526
V + YQ ++ I VDE+QDT+ QY L+++LAS + +VGD DQSI+ + GADIS
Sbjct: 209 VLEYYQRKFQYIHVDEYQDTNRAQYLLVKLLASRFQNLCVVGDSDQSIYRWRGADISNIL 268
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
SF KD+ N + I L +NYRST+ I++AA+ +I++N R + K + T+N G KI+
Sbjct: 269 SFEKDYPNARVILLEQNYRSTKRILQAANEVIKNNYNR-KPKKLWTENPEGKKIVYFRAE 327
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGV 645
NE A+ F+ KI E +G + + AILYR +V + + I + I G+
Sbjct: 328 NEQAEAQFVAGKIKELVESGKRQLSDF---AILYRTNAQSRVVEEVLMKSNIDYTIVGGI 384
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID--HIDKISTIRKC 703
FY +K ++ I+A LR DD RV KR I +DKI+ +
Sbjct: 385 KFYDRKEIKDILAYLRLIANPDDDISLLRVINV--------PKRGIGSTSMDKIARYAQE 436
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
+ +S +F A F + VL ++I + + + SV +V +
Sbjct: 437 NDLS----LFQALEEADFIGLSPKITKAVLEFRDLIKGYTQMQEYL-----SVTELVEE- 486
Query: 764 YLLEQRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
V+D G + +L + L + Q L ++ +FLS T EE + D+ +
Sbjct: 487 -------VLDKSGYRDMLKAEKTLDA--QSRLENIDEFLSV--TKGFEENSEDKSLIAFL 535
Query: 823 N--VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
L A ID + E + +N+ +V L T+H +KGLE+ +VF+ E P
Sbjct: 536 TDLALVADIDRLDEED---------NNQQAVVLMTLHSAKGLEFPVVFLIGMEEGVFPHS 586
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQL--LQP-SRFLKEIPH 937
+EEERRL YV +TRA ++L++ M + L P SRF++EIP
Sbjct: 587 RSLMDE-----EEMEEERRLAYVGITRAEEELYLTNAQMRTLYGRTNLNPVSRFIQEIPE 641
Query: 938 HL 939
L
Sbjct: 642 DL 643
>gi|359781120|ref|ZP_09284345.1| DNA-dependent helicase II [Pseudomonas psychrotolerans L19]
gi|359371180|gb|EHK71746.1| DNA-dependent helicase II [Pseudomonas psychrotolerans L19]
Length = 722
Score = 229 bits (585), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 203/737 (27%), Positives = 339/737 (45%), Gaps = 110/737 (14%)
Query: 237 MPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNI 281
M D+ S L SLND Q +A + L ++AG GSGK SP +I
Sbjct: 1 MNDDISLLLNSLNDAQRQAVAAPLGRQL-VLAGAGSGKTRVLVHRIAWLIQVERASPHSI 59
Query: 282 LAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGH 341
L++TFT AA+EMR RI ++G + + + + TFH + +L R+H ++ + F I
Sbjct: 60 LSVTFTNKAAAEMRHRIEQLLG-MSPQGMWVGTFHGLAHRLLRAHWQEAGLSQNFQILDS 118
Query: 342 GQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
Q+R +VKR+ ++ + + +A F+
Sbjct: 119 DDQQR---------------IVKRVIRELGLDEQRWPARQAQWFI--------------- 148
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIGD---EIGAAILENYNGILRSCNALDYHDLISCS 458
+ K G P + GD +I E Y +D+ +L+ +
Sbjct: 149 ----------NGQKDEGLRPQHIQAAGDLFLSTMRSIYEAYEAACARAGVIDFSELLLRA 198
Query: 459 VKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-RITIVGDDDQSIFSF 517
+ L P + + YQ ++ ++VDEFQDT+A+QY+ L+ LA + + +VGDDDQSI+ +
Sbjct: 199 LDLWRNNPSLLEHYQRRFQHLLVDEFQDTNAVQYAWLKHLAQNGASLMVVGDDDQSIYGW 258
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GA I F +DF + + IRL +NYRST I++AA+ LI HN R K + TD G
Sbjct: 259 RGAKIENIQQFNEDF-SAEIIRLEQNYRSTDTILKAANGLIAHNFGRLG-KELWTDTGEG 316
Query: 578 SKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERK 637
I + NE + +I++ I G +AILYR +V + A K
Sbjct: 317 EAITLYAGFNEHDEARYIVETIESEFKKG----TRRSEMAILYRSNAQSRVLEEALLREK 372
Query: 638 IPFNIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDK 696
IP+ I+ G+ F+ + ++ +A LR DD RV + + ++ ++ +
Sbjct: 373 IPYRIYGGLRFFERAEIKNAMAYLRLIQHRHDDAALERVIN---VPPRGIGEKTVEALRS 429
Query: 697 ISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSV 756
+ + S A D+ GA+ S L +E++ L ++ A S+
Sbjct: 430 AARTQNTSLWQALHDLVGARAVSGRAASALNA------FVELVDTL-----ALKAEDLSL 478
Query: 757 ANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQ 816
++V Q ++EQ +V F + + L+ L++ F F+ +E
Sbjct: 479 HSLVQQ--IIEQTGLVTFHKEEKGEKGQARVENLEELVSAARSF---DFSGDEE------ 527
Query: 817 DKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
+ L AF+D+ + E TQ +E+SV L T+H +KGLE+ +VF+A E
Sbjct: 528 -----MTPLAAFLDHAA---LESGDTQADSHEDSVQLMTLHSAKGLEFPLVFLAGMEEGL 579
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLK 933
P H+ ++ E G +EEERRL YV +TRA ++L + Y + + + SRF++
Sbjct: 580 FP--HKM--SLEEPG-RLEEERRLAYVGITRAMRRLVMSYAETRRLYGSETYNKVSRFVR 634
Query: 934 EIPHHL-REVQAEQSVQ 949
E+P L +EV+ +V+
Sbjct: 635 EVPDGLIQEVRLSNAVK 651
>gi|415721999|ref|ZP_11468887.1| UvrD/REP helicase [Gardnerella vaginalis 00703Bmash]
gi|388060163|gb|EIK82862.1| UvrD/REP helicase [Gardnerella vaginalis 00703Bmash]
Length = 1018
Score = 229 bits (584), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 217/756 (28%), Positives = 341/756 (45%), Gaps = 124/756 (16%)
Query: 245 LQSLNDQQLEAACGDMSTP-LLIVAGPGSGKG---------------ISPSNILAMTFTT 288
L+ LN QQ +A + P LLI AG GSGK PS ILA+TFT
Sbjct: 127 LEGLNPQQSKAV--QYTGPALLIGAGAGSGKTRVLTRRIAWILANRKAWPSQILAITFTN 184
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA+EMR+R+ S++G A A + +STFHS +++ R+H + + S F IY R
Sbjct: 185 KAAAEMRERLASLIGPA-ANSMWVSTFHSACVKILRTHGDSIGLKSGFSIYDSSDCERL- 242
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
V+++ +E + +K+ + +L + + S F N + + L Y +
Sbjct: 243 ---VKIIASELNIDIKKFTPKLLLS-------KISDFKNNLVTW----QENLKNYAPDYK 288
Query: 409 DGMDVAKASGKTPAEFRKIG--DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
G ++ AS F G D + AA+ Y L NA+D+ DLI +VKLL P
Sbjct: 289 PGASISGAS-----SFNAAGNADALYAAVYAEYQNRLSVSNAVDFDDLIMLTVKLLRQNP 343
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-------------------------- 500
+V Y+ ++ I+VDE+QDT+ QY L++ LA
Sbjct: 344 QVSAYYKRKFRYILVDEYQDTNHAQYVLIRQLAGVGDAGVGDNSARFATTDAYEASAASP 403
Query: 501 ------HNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAA 554
+ IT+VGD DQSI++F GADI F +DF N I L +NYRST+ I++AA
Sbjct: 404 DSTQLPQSSITVVGDSDQSIYAFRGADIRNIQDFEQDFPNATTIMLEQNYRSTQTILDAA 463
Query: 555 SSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYG 614
+++I +N R + K + T GS I+ N + ++ +I AS +Y
Sbjct: 464 NAVISNNTNR-KPKKLWTSLGKGSPIVGYVADNAQGEAMWVAQEIARLASEDGEDGVNYS 522
Query: 615 SIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYR 673
IAI+YR + + A + +P+ + G FY ++ V+ +A L++ DD R
Sbjct: 523 DIAIMYRANSQSRSLEDALIKSGLPYQLVGGTKFYERREVKDALAYLQSIANPDDDVNMR 582
Query: 674 RVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKIS---GTFKRS--QLTQ 728
R+ + ++ R I + SF SA I KI+ G R+ L
Sbjct: 583 RILN---VPKRGLGARAESQITSYAKENSISFWSALSQI--DKIAEQIGISSRTFNALKS 637
Query: 729 GRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRS 788
R ++ +L K +PS V N++ + LL+ L E D +
Sbjct: 638 FRDLITSLIDFMKANDSKPS-----KVVENVLNESGLLQD-----------LRESKDPQD 681
Query: 789 VLQYLLADVTDFLSTKFTAAKEEGNV-DQDKKGCINVLKAFIDYISERETEHFRTQRHDN 847
+ V + + AA+ E N D + G + D ++ Q D
Sbjct: 682 EFR-----VDNLSQLQSVAAEYEQNTPDANVAGFLETTALVAD------SDQLPDQGEDT 730
Query: 848 ENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTR 907
VTL T+H +KGLE+ +VF+ + P + N+K + EERRL YV +TR
Sbjct: 731 -GKVTLMTLHTAKGLEYPVVFLTGMEQGTFPHSRCVD---NQK--ELCEERRLAYVGITR 784
Query: 908 ARKKLFILYVMMDANW----QLLQPSRFLKEIPHHL 939
A+K L++ + + W +++Q S+FL EIP L
Sbjct: 785 AKKILYVTWAAERSQWGKSAEMIQ-SQFLDEIPADL 819
>gi|418070303|ref|ZP_12707578.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus R0011]
gi|423077938|ref|ZP_17066628.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus ATCC
21052]
gi|357539723|gb|EHJ23740.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus R0011]
gi|357552816|gb|EHJ34580.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus ATCC
21052]
Length = 750
Score = 229 bits (584), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 213/725 (29%), Positives = 331/725 (45%), Gaps = 110/725 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ +ND+Q EA P+LI+AG GSGK ++P NILA+TFT
Sbjct: 7 LKGMNDKQAEAVLA-TEGPVLIMAGAGSGKTRVLTHRIAYLVEEKNVNPWNILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+G +V A+++ +STFH+ +++ R +KL F I +Q
Sbjct: 66 AAREMRERVGKLVDPEIARDIWVSTFHALCVRILRRDIDKLGYNRAFTIADPAEQ----- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER- 408
+ +VK I D F ++ + + K E
Sbjct: 121 ----------LTLVKHILAD---------------FNLDPKRYDPKAILGAISGAKNELI 155
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D + +P F K A + Y LRS ALD+ DLI ++ L PE
Sbjct: 156 DPQTYSDEQANSP--FTKTV----AQVYAEYQKRLRSDQALDFDDLIMQTIVLFEKDPET 209
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDS 527
YQ ++ I VDE+QDT+ QY L+ +LA ++ + +VGD DQSI+ + GA++
Sbjct: 210 LGFYQRKFRYIHVDEYQDTNEAQYRLVHMLAEGYHNLCVVGDADQSIYGWRGANMQNILD 269
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F+KD+ + I L +NYRST+ I+ AA+ +I++N+ R Q K + T+N+ G KI +
Sbjct: 270 FKKDYPKAQVILLEQNYRSTKTILSAANDVIKNNLNR-QAKTLWTENATGDKITYYRAQS 328
Query: 588 EDAQCAFIIDKI-LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
E + F+I +I E A N YG AILYR + + AF + IP+ + G
Sbjct: 329 ETDEAIFVIRRIEAEMAQNH----RKYGDFAILYRTNAQSRAIEEAFVKSNIPYKMVGGH 384
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH-----IDKISTI 700
FY +K +R +A R + DD + R+ E KR I + ++ +
Sbjct: 385 KFYDRKEIRDALAYFRLVVNPDDDMSFNRIVN--------EPKRGIGNTSVAKLEAFANQ 436
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
S + AA + + ISG R L Q K MI +L +R ++ A +
Sbjct: 437 HDWSLLEAAANAELSPISGK-ARGNLAQFGK------MIQRLGQRRKDLNVTEMMQAILD 489
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
YL RA + + +L SV Q F A + N D D
Sbjct: 490 DSGYLGTLRAANTLEAETRVENLEELLSVTQ------------GFDARYQPENEDSD--- 534
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
F+D+++E + + ++ VTL T+H +KGLE+ +VF+ E PL
Sbjct: 535 ------IFVDFLAELALLSDQDEVEEDAQEVTLMTLHAAKGLEFPVVFLVGMEEGLFPLS 588
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPH 937
A++E +EEERRL YV +TRA++KL++ M+ Q SRF++EI
Sbjct: 589 R---AAMDE--GELEEERRLAYVGITRAKQKLYLTNAYARMLYGQRQNNPASRFIEEIDP 643
Query: 938 HLREV 942
L ++
Sbjct: 644 ELLDI 648
>gi|422643771|ref|ZP_16706910.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. maculicola
str. ES4326]
gi|330957324|gb|EGH57584.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. maculicola
str. ES4326]
Length = 669
Score = 229 bits (584), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 196/726 (26%), Positives = 326/726 (44%), Gaps = 125/726 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+AMTFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ + LT+STFH+ L + R +L F I+
Sbjct: 60 AAREMKERVGTLLRGGEGRGLTVSTFHNLGLNIIRKEHTRLGYKPGFSIFDETD------ 113
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
VK + TD++ Q D
Sbjct: 114 -------------VKALMTDIM------------------------------QKEYSGDD 130
Query: 410 GMDVAK---ASGKT----PAEF----RKIGDEIGAAILENYNGILRSCNALDYHDLISCS 458
G+D K S K PAE R ++ A + +Y L++ NA+D+ DLI
Sbjct: 131 GVDEIKNMIGSWKNDLILPAEALENARNPKEQTAAIVYTHYQRTLKAYNAVDFDDLILVP 190
Query: 459 VKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSF 517
VKL P+V +++Q+ + ++VDE+QDT+A QY L+++L S N+ T+VGDDDQSI+++
Sbjct: 191 VKLFQEHPDVLEKWQNKVRYLLVDEYQDTNASQYLLVKLLIGSRNQFTVVGDDDQSIYAW 250
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GA + D+ + K + L +NYRST I+ A+ LI +N + K + +D HG
Sbjct: 251 RGARPENLMLLKDDYPSLKVVMLEQNYRSTSRILRCANVLISNNPHAFE-KQLWSDMGHG 309
Query: 578 SKIIIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
+I + C NEDA+ + +I L ++ P Y AILYR K+ + +
Sbjct: 310 DEIRVIRCRNEDAEAERVAMEILTLHLRTDRP-----YSDFAILYRGNYQAKLIELKLQH 364
Query: 636 RKIPFNIHGV-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
++P+ + G +F+ ++ V+ ++A R + DD + RV + +E ++ +
Sbjct: 365 HQVPYRLSGGNSFFGRQEVKDLMAYFRLLVNPDDDNAFLRVIN---VPRREIGSTTLEKL 421
Query: 695 DKISTIRKCSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI 753
+T RK S +A +I GA + + +L R + + V
Sbjct: 422 GNYATERKVSMYAATDEIGLGAHLDSRY-----------------TDRLQRFKCWMDGVR 464
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
A P L + V+D D L +++ Y +++V F +
Sbjct: 465 QQCAQNDPIAAL--RSMVMDIDYENWLRQNSSSEKAADYRMSNVW------FLIEALKNT 516
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+++D++G + + +A I + R+ + + D V + T+H SKGLE+ VF+
Sbjct: 517 LEKDEEGGMTIEEA-IGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGME 575
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSR 930
E +P + ++EEERRL YV +TRAR+ L + + + PSR
Sbjct: 576 EEILPHRSSI------EADTIEEERRLAYVGITRARQTLAFTFAAKRKQYGEIIDCAPSR 629
Query: 931 FLKEIP 936
FL E+P
Sbjct: 630 FLDELP 635
>gi|257066475|ref|YP_003152731.1| UvrD/REP helicase [Anaerococcus prevotii DSM 20548]
gi|256798355|gb|ACV29010.1| UvrD/REP helicase [Anaerococcus prevotii DSM 20548]
Length = 731
Score = 229 bits (584), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 207/735 (28%), Positives = 327/735 (44%), Gaps = 142/735 (19%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN Q +A D PLL++AG GSGK I P NI+A+TFT
Sbjct: 3 LDGLNKMQRKAVLHD-EGPLLVLAGAGSGKTRVLTTSIAYLIEEKNIDPRNIIAITFTNK 61
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EM++RI ++G + L I TFHS ++ R + +K+ F IY Q+ I
Sbjct: 62 AANEMKERISKLLGMDVS-HLWIGTFHSICARILRMNIDKIGYDRNFTIYDTSDQKTLIK 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
E + L GY + + RD
Sbjct: 121 EIINEL----------------------GY----------------------KDDIAPRD 136
Query: 410 GMDV---AKASGKTPAEFRKI------GDEIGAAILENYNGILRSCNALDYHDLISCSVK 460
++V AK P EF K+ GD I I + Y NALD+ DLI +
Sbjct: 137 ALNVISSAKNKSLDPDEFLKLNTYYSKGD-IYYEIYKKYEEKKFYYNALDFDDLIDKVLY 195
Query: 461 LLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNG 519
L E YQ ++ + VDE+QDT+ QY L++ A HN +T+VGD DQSI+SF G
Sbjct: 196 LFVRSKETLDFYQKKFEYVFVDEYQDTNNSQYELIKYFAGFHNNVTVVGDADQSIYSFRG 255
Query: 520 ADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSK 579
A+IS +F KDF + + I+L +NYRST+ I+E A+ LI++N +R K + T+N G +
Sbjct: 256 ANISNILNFEKDFKDAETIKLEQNYRSTKNILETANLLIENNSERKD-KELWTENKGGDR 314
Query: 580 IIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIP 639
+I K E + F++D I G + AILYR + F+ + +
Sbjct: 315 VIYKANSVESEEAKFVLDNIKSLMQEGYDA----KDFAILYRTNAQSRPFEEILMKNLLD 370
Query: 640 FN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHI 694
+ + G+ FY +K ++ +++ L+ + DD +R+ E K+ + I+ +
Sbjct: 371 YKVVGGLKFYDRKEIKDLVSYLKILVNPKDDLSLKRII-------NEPKRGIGNKSIEEL 423
Query: 695 DKISTIRKCSFISAAC-DIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPS---IS 750
+++ + + + D F IS K+S K L L I V I
Sbjct: 424 QRVANLHNIAILDLITDDSFNTLISDRIKKST----EKFYLPLREIFDNVDNYKIVDLIE 479
Query: 751 AVITSVANM--VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAA 808
V+ M + Y +E RA +D ++ +F+S +A+
Sbjct: 480 DVLDKSGYMKSLESSYSVEDRARID----------------------NINEFIS---SAS 514
Query: 809 KEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVF 868
+ + N +D DY+ + +NS++L T+H +KGLE+ +VF
Sbjct: 515 EYQENNPEDN---------IYDYLENLSLLSDLDKTESTDNSISLMTMHAAKGLEFPVVF 565
Query: 869 VAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQ---L 925
V +E P G + ++EEERRL YVA+TRA++KLF+ N+
Sbjct: 566 VVGLDEGLFP------GKRSIDEGNIEEERRLFYVAITRAQEKLFLSSAEARRNYGKPVF 619
Query: 926 LQPSRFLKEIPHHLR 940
+PSRF+ EI +++
Sbjct: 620 YKPSRFIDEIIDNIK 634
>gi|406586335|ref|ZP_11061267.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. GMD1S]
gi|419814479|ref|ZP_14339263.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. GMD2S]
gi|419816773|ref|ZP_14340946.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. GMD4S]
gi|404466807|gb|EKA12101.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. GMD4S]
gi|404471770|gb|EKA16246.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. GMD2S]
gi|404474145|gb|EKA18464.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. GMD1S]
Length = 763
Score = 229 bits (584), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 210/729 (28%), Positives = 337/729 (46%), Gaps = 115/729 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R + ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYGL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R + ++S+ K N D
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERT--------ILGTISNAK----NDLIDD 153
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
A+A + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 154 AAYAAQAG--------DMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +II ++E
Sbjct: 266 EKDYPNAKVVLLEENYRSTKTILQAANDVIKNNKNR-RPKNLWTQNADGEQIIYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+ I E G + + A+LYR + + A + IP+ + G F
Sbjct: 325 QDEAVFVAKTIDEL---GRSQNFLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRK 702
Y +K +R IIA L D+ + R+ E KR ++ I + ++
Sbjct: 382 YSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRGFANMQD 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ +I + I G +S +L E + +L +I+ ++ +V
Sbjct: 434 MSMLDASANIMLSGIKGKAAQSIWDFANMILDLREKLDQL-----TITELVEAV------ 482
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
LE+ +D +LN L S + + ++ +FLS T ++ Q+++ +
Sbjct: 483 ---LEKTGYID-----ILNAQATLESKAR--VENIEEFLSV--TKNFDDNPDSQEEETGL 530
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 531 DKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFIIGMEENVFPLSR- 586
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+ EI
Sbjct: 587 ----AAEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFINEI 638
Query: 936 PHHLREVQA 944
L E Q
Sbjct: 639 SSDLIEYQG 647
>gi|402758908|ref|ZP_10861164.1| ATP-dependent DNA helicase [Acinetobacter sp. NCTC 7422]
Length = 679
Score = 229 bits (584), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 210/751 (27%), Positives = 353/751 (47%), Gaps = 116/751 (15%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LND+QLEA + PLL++AG GSGK GI I AMTFT AA
Sbjct: 7 LNDKQLEA-MKYVQGPLLVLAGAGSGKTSVITRKVAFLVQQCGIPAYRITAMTFTNKAAR 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G ++ + AK L++STFH+F L L R + L + F +I++A
Sbjct: 66 EMKERVGKLLSREEAKGLSVSTFHTFGLNLLRLELKHLPLKNNF----------SILDAD 115
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
KRI D++ D G L A +S +K + +
Sbjct: 116 D---------CKRILMDLMQRDNLSGAESKELL---AKAMKKISDWK---------NDLV 154
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
V + + T + D A + + Y LR+ NA+D+ DLI +LL EV ++
Sbjct: 155 VPEQAHST---CETVEDVQFAHLYQLYERNLRAYNAVDFDDLIVMPTRLLQENAEVRDKW 211
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY+L+++L + T VGDDDQSI+++ GA ++D
Sbjct: 212 QNRVRYLLVDEYQDTNTAQYTLVKLLVGVMGQFTAVGDDDQSIYAWRGAKPENMALLKED 271
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F N K I+L +NYRST I++AA+++I++N K + +D HG I + C N+D +
Sbjct: 272 FHNLKVIKLEQNYRSTSRILKAANAVIENNPHIFD-KKLWSDKGHGETIRVITCLNDDDE 330
Query: 592 CAFIIDKILEHA-SNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYR 649
++ ++ H NG ++ A+LYR +V +T R+ +IP+ + G +F+
Sbjct: 331 AERVVKDLITHKLMNGK----NWKDYAVLYRGNFQARVIETQLRQMQIPYKLSGGQSFFA 386
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI--DKISTIRK---CS 704
+ ++ +++ LR + DD + R+ KR I + +K+ + S
Sbjct: 387 RAEIKDVMSYLRLIINPEDDSAFLRIINT--------PKRAIGPVTLEKLGLFAQENTLS 438
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK- 763
++A+ D ++S + TQ + + I+ R + V M+ +
Sbjct: 439 LLTASSD---QRLSMVLPKKAATQLHEF---ADFIATFTRELLDDDEPMPKVRQMINEAG 492
Query: 764 ---YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
Y+ EQ A + K L+ L S +Q LL + TD D D+K
Sbjct: 493 YIDYIREQAATPAQEKTK-LDSIESLYSSIQNLL-NRTD---------------DVDEKN 535
Query: 821 CINVLKAFI--DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
+V++ + D + +++ E ++ + V L T+H +KGLE+ V++ E +P
Sbjct: 536 IESVIRKLVLLDMLEQQQEE-------EDTDKVNLLTLHAAKGLEFPYVYMIGLEEELLP 588
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDAN---WQLLQPSRFLKEI 935
H+ N +E ++EEERRL+YV +TRAR+ L + N + + PSRFL E+
Sbjct: 589 --HK-NSIASE---TIEEERRLMYVGITRARQGLTLTLAEQRKNGGQMRQMTPSRFLDEM 642
Query: 936 PHHLREVQAEQSVQDQHENIPEGTAQFTINL 966
P E + + + E Q+ NL
Sbjct: 643 PQDDLEWHGRKKKLAPNVDPKEQAQQYLANL 673
>gi|153939400|ref|YP_001392617.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum F str.
Langeland]
gi|152935296|gb|ABS40794.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum F str.
Langeland]
Length = 738
Score = 229 bits (584), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 206/707 (29%), Positives = 342/707 (48%), Gaps = 144/707 (20%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EAA + PLLI+AG GSGK I PS ILA+TFT AA
Sbjct: 7 LNKEQYEAAIT-IDGPLLILAGAGSGKTRVLTYRIAHMIENLNIYPSKILAITFTNKAAG 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++RI ++VG + + +STFHS +++ R +KL F IY Q+ + + +
Sbjct: 66 EMKERIKALVGDV-VEGMWVSTFHSSCVRILRREIDKLGYDKNFTIYDTYDQKTLVKQCM 124
Query: 353 RLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
L N+K + + I + T G+ ++D +
Sbjct: 125 EELNINDKEITDREI----INTIGN------------------------------QKDNL 150
Query: 412 DVAKASGKTPAEFRKIG------DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+P EF+KI D I A + Y L++ NALD+ DLI +V+L T
Sbjct: 151 -------ISPKEFKKISNGNYRKDRIADAYIL-YQKKLKTNNALDFDDLIYKTVELFKTN 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISG 524
+V + YQ +K I+VDE+QDT+ QY L+++LA H + +VGDDDQ I+ + GADIS
Sbjct: 203 KDVLEFYQRKFKYIMVDEYQDTNKSQYELVKLLALVHRNMCVVGDDDQCIYEWRGADISN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+F KD+ K I+L +NYRS I+ AA+ +I++N +R K ++T+N +G+KI +
Sbjct: 263 ILNFEKDYKEAKVIKLEQNYRSKGNILNAANEVIKNNSQRKN-KVLRTENENGNKIKVFR 321
Query: 585 CHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN 641
+++ + F+ I KI++ + S+ A+LYR ++F+ F +R IP+
Sbjct: 322 AYSDIDEAKFVASEIKKIIKDSER------SFNDFAVLYRTNAQSRIFEDVFMKRDIPYR 375
Query: 642 -IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTI 700
I G+ FY +K ++ ++A L+ DD RR+ KR I +T+
Sbjct: 376 LIGGLKFYDRKEIKDLMAYLKLINNPLDDISLRRIINV--------PKRSIGD----ATV 423
Query: 701 RKCSFISAACD------IFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRR--EPSISAV 752
+K + D + A T + +T +K + +++ +R+ E S+SA+
Sbjct: 424 KKVQEFANEMDECMYSVLLDADQILTLSQRSITSIKKF---VSIMNSFIRKKDEISVSAI 480
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDN--DLRSV--LQYLLADVTDFLSTKFTAA 808
I K +LE+ + +L N N D+ V L+ L++ DF
Sbjct: 481 I---------KEILEETGYL----KELKNSKNPDDVSRVENLKELVSAAADF-------- 519
Query: 809 KEEGNVDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIV 867
E + D+ L AF++ ++ + +++ +N +SV + T+H +KGLE+ +V
Sbjct: 520 -ERESEDKS-------LGAFLEKVALVTDIDNY----DENSDSVAMMTVHSAKGLEFPVV 567
Query: 868 FVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI 914
F+ P + +EE RRL YVA+TRA+++L+I
Sbjct: 568 FMVGMENGIFPGTQSLSDP-----KEMEESRRLCYVAITRAKEQLYI 609
>gi|366086333|ref|ZP_09452818.1| ATP-dependent DNA helicase PcrA [Lactobacillus zeae KCTC 3804]
Length = 750
Score = 229 bits (584), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 211/723 (29%), Positives = 337/723 (46%), Gaps = 106/723 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ +ND+Q EA P+LI+AG GSGK ++P NILA+TFT
Sbjct: 7 LKGMNDKQAEAVLA-TEGPVLIMAGAGSGKTRVLTHRIAYLVEEKNVNPWNILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+G +V A+++ +STFH+ +++ R +KL F I +Q
Sbjct: 66 AAREMRERVGKLVDPEIARDIWVSTFHALCVRILRRDIDKLGYNRAFTIADPAEQ----- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER- 408
+ +VK I D F ++ + S K +
Sbjct: 121 ----------LTLVKHILAD---------------FNLDPKRYDPKSILGAISNAKNDLI 155
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D A +P F KI E+ A Y LRS ALD+ DLI ++ L E
Sbjct: 156 DPQTYADEQANSP--FTKIVAEVYA----EYQKRLRSDQALDFDDLIMQTIVLFEKDKET 209
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDS 527
YQ ++ I VDE+QDT+ QY L+ +LA ++ + +VGD DQSI+ + GA++
Sbjct: 210 LAFYQRKFRYIHVDEYQDTNEAQYRLVHMLAEGYHNLCVVGDADQSIYGWRGANMQNILD 269
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F+KDF + I L +NYRST+ I+ AA+ +I++N+ R Q+K + T+N G KI +
Sbjct: 270 FKKDFPKARVILLEQNYRSTKTILSAANDVIKNNLNR-QVKTLWTENGKGDKITYYRAQS 328
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
E + F+I +I E + YG AILYR + + AF + IP+ + G
Sbjct: 329 ETDEAIFVIRRIEEEMAE---HHRHYGDFAILYRTNAQSRAIEEAFVKSNIPYKMVGGHK 385
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIRK 702
FY +K +R +A R + DD + R+ E K+ + ++ ++ ++
Sbjct: 386 FYDRKEIRDALAYFRLVVNPEDDMSFTRIV-------NEPKRGIGNTSVEKLEAFASQHG 438
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + AA + + ISG + + G+ MI +L R ++ A +
Sbjct: 439 WSLLEAAANAELSPISGKARGNLAKFGK-------MIQELGTRRKDLNVTEMMQAILDES 491
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
YL RA L D + + L+ LL+ VT ++ E+ ++
Sbjct: 492 GYLDALRA------AHTLEADTRIEN-LEELLS-VTQGFDERYQPENEDSDI-------- 535
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
F+D+++E + + ++ VTL T+H +KGLE+ +VF+ E PL
Sbjct: 536 -----FVDFLAELALLSDQDEVEEDAQEVTLMTLHAAKGLEFPVVFLVGMEEGLFPLSR- 589
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFI--LYVMMDANWQLLQP-SRFLKEIPHHL 939
A++E +EEERRL YV +TRA++KL++ Y M + P SRF++EI L
Sbjct: 590 --AAMDE--GELEEERRLAYVGITRAKQKLYLSNAYARMLYGQRQNNPASRFIEEIDPDL 645
Query: 940 REV 942
EV
Sbjct: 646 LEV 648
>gi|199597352|ref|ZP_03210783.1| Superfamily I DNA and RNA helicase [Lactobacillus rhamnosus HN001]
gi|199591868|gb|EDY99943.1| Superfamily I DNA and RNA helicase [Lactobacillus rhamnosus HN001]
Length = 750
Score = 229 bits (584), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 213/725 (29%), Positives = 331/725 (45%), Gaps = 110/725 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ +ND+Q EA P+LI+AG GSGK ++P NILA+TFT
Sbjct: 7 LKGMNDKQAEAVLA-TEGPVLIMAGAGSGKTRVLTHRIAYLVEEKNVNPWNILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+G +V A+++ +STFH+ +++ R +KL F I +Q
Sbjct: 66 AAREMRERVGKLVDPEIARDIWVSTFHALCVRILRRDIDKLGYNRAFTIADPAEQ----- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER- 408
+ +VK I D F ++ + S K E
Sbjct: 121 ----------LTLVKHILAD---------------FNLDPKRYDPKSILGAISGAKNELI 155
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D + +P F K A + Y LRS ALD+ DLI ++ L PE
Sbjct: 156 DPQTYSDEQANSP--FTKTV----AQVYAEYQKRLRSDQALDFDDLIMQTIVLFEKDPET 209
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDS 527
YQ ++ I VDE+QDT+ QY L+ +LA ++ + +VGD DQSI+ + GA++
Sbjct: 210 LGFYQRKFRYIHVDEYQDTNEAQYRLVHMLAEGYHNLCVVGDADQSIYGWRGANMQNILD 269
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F+KD+ + I L +NYRST+ I+ AA+ +I++N+ R Q K + T+N+ G KI +
Sbjct: 270 FKKDYPKAQVILLEQNYRSTKTILSAANDVIKNNLNR-QAKTLWTENATGDKITYYRAQS 328
Query: 588 EDAQCAFIIDKI-LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
E + F+I +I E A N YG AILYR + + AF + IP+ + G
Sbjct: 329 ETDEAIFVIRRIEAEMAQNH----RKYGDFAILYRTNAQSRAIEEAFVKSNIPYKMVGGH 384
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH-----IDKISTI 700
FY +K +R +A R + DD + R+ E KR I + ++ +
Sbjct: 385 KFYDRKEIRDALAYFRLVVNPDDDMSFNRIVN--------EPKRGIGNTSVAKLEAFANQ 436
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
S + AA + + ISG R L + K MI +L +R ++ A +
Sbjct: 437 HDWSLLEAAANAELSPISGK-ARGNLAEFGK------MIQRLGQRRKDLNVTEMMQAILD 489
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
YL RA + + +L SV Q F A + N D D
Sbjct: 490 DSGYLGALRAANTLEAETRVENLEELLSVTQ------------GFDARYQPENEDSD--- 534
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
F+D+++E + + ++ VTL T+H +KGLE+ +VF+ E PL
Sbjct: 535 ------IFVDFLAELALLSDQDEVEEDAQEVTLMTLHAAKGLEFPVVFLVGMEEGLFPLS 588
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPH 937
A++E +EEERRL YV +TRA++KL++ M+ Q SRF++EI
Sbjct: 589 R---AAMDE--GELEEERRLAYVGITRAKQKLYLTNAYARMLYGQRQNNPASRFIEEIDP 643
Query: 938 HLREV 942
L ++
Sbjct: 644 ELLDI 648
>gi|406837759|ref|ZP_11097353.1| ATP-dependent DNA helicase [Lactobacillus vini DSM 20605]
Length = 750
Score = 229 bits (584), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 220/738 (29%), Positives = 350/738 (47%), Gaps = 118/738 (15%)
Query: 240 EYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAM 284
E + L LND+Q EA ++ PLL++AG GSGK GI+P NILA+
Sbjct: 2 EAGEILTGLNDKQKEA-VEQINGPLLVIAGAGSGKTRVLTHRIAYLIENVGINPWNILAI 60
Query: 285 TFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQ 344
TFT AA EM++R+ ++G A A ++ +STFH+ +++ R +KL F I G +Q
Sbjct: 61 TFTNKAAREMQERVSQLLGAAAA-DVWVSTFHALCVRILRRDIDKLGYERTFTIVGTSEQ 119
Query: 345 RRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYN 404
R L++N V+ ++ D D L S+S+ K N
Sbjct: 120 RT-------LMKN----VLAELNLDNKKFDPR-------------SLLASVSNAK----N 151
Query: 405 KFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLST 464
+ A+A+G P E + A Y L A+D+ DLI ++KL
Sbjct: 152 QLLTPAELAAQANG--PFEKQ------AAQAYRLYQQGLEKNQAVDFDDLIMLTLKLFKQ 203
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA--SHNRITIVGDDDQSIFSFNGADI 522
PE+ + YQD + + VDE+QDT+ QY L+ LA SHN + +VGD DQSI+ + GA++
Sbjct: 204 EPEILKHYQDKFLYLHVDEYQDTNEAQYQLVSQLAAGSHN-LCVVGDADQSIYGWRGANM 262
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
F KD+ + K ++L +NYRST+ I++AA+S+I++NV R ++K + T+N G KI
Sbjct: 263 QNILDFEKDYPSAKVVKLEQNYRSTKTIIQAANSVIKNNVNR-KVKKLWTENHQGDKIHY 321
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI 642
+ + + F+I +I + + Y AILYR + + AF + IP+ I
Sbjct: 322 YRAQSANDEAYFVIRQIQQLMQDKS---YRYQDFAILYRTNAQSRTVEEAFVKSNIPYRI 378
Query: 643 HGV-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI-----DHIDK 696
G FY +K + I+A L+ D + RV E KR I + +
Sbjct: 379 VGAHKFYDRKEILDILAYLQLVTNPQDSLSFNRVVN--------EPKRGIGAASLEKLTD 430
Query: 697 ISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLE----MISKLVRREPSISAV 752
+ ++ S + AA + A ISG R LE MI+ L + + S+
Sbjct: 431 FAAYQQISLLKAAENPAMANISGKAARE-----------LENFAVMINHLHQLQQSVD-- 477
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
IT + +K L++ K L + L ++ ++L ++ +F A +
Sbjct: 478 ITELT----EKILVQSGYQAALQATKNLENQSRLENLDEFLT------VTRQFDATWQPE 527
Query: 813 NVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKA 872
N D D+ F+D++++ + + + V L T+H +KGLE+ +VF+
Sbjct: 528 NEDSDR---------FVDFLADLALMSDQDSLSEETDEVALMTLHAAKGLEFPVVFLVGM 578
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI---LYVMMDANWQLLQPS 929
E PL G T +EEERRL YV +TRA++KL++ L M+ Q S
Sbjct: 579 EEGLFPL-----GRAAFNETELEEERRLAYVGITRAKQKLYLTNALSRMLYGRQQTNPVS 633
Query: 930 RFLKEIPHHLREVQAEQS 947
RF+ EI L E + Q+
Sbjct: 634 RFIDEIDPSLLESENSQA 651
>gi|116490506|ref|YP_810050.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni PSU-1]
gi|290889906|ref|ZP_06552993.1| hypothetical protein AWRIB429_0383 [Oenococcus oeni AWRIB429]
gi|419757862|ref|ZP_14284187.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni AWRIB304]
gi|419857534|ref|ZP_14380240.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni AWRIB202]
gi|419859013|ref|ZP_14381670.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni DSM 20252 =
AWRIB129]
gi|421184304|ref|ZP_15641728.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni AWRIB318]
gi|421194470|ref|ZP_15651690.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni AWRIB568]
gi|421197319|ref|ZP_15654496.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni AWRIB576]
gi|116091231|gb|ABJ56385.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni PSU-1]
gi|290480516|gb|EFD89153.1| hypothetical protein AWRIB429_0383 [Oenococcus oeni AWRIB429]
gi|399905371|gb|EJN92814.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni AWRIB304]
gi|399967588|gb|EJO02061.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni AWRIB318]
gi|399975547|gb|EJO09598.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni AWRIB576]
gi|399977888|gb|EJO11859.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni AWRIB568]
gi|410497374|gb|EKP88848.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni DSM 20252 =
AWRIB129]
gi|410497798|gb|EKP89267.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni AWRIB202]
Length = 748
Score = 229 bits (584), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 203/724 (28%), Positives = 339/724 (46%), Gaps = 111/724 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L LND+Q EA PLLI+AG GSGK + P +ILA+TFT
Sbjct: 5 LTGLNDKQKEAVLT-TEGPLLIMAGAGSGKTRVLTHRVAYLVKEKHVDPWSILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++RI +V + A+ + +STFH+ S ++ R +K+ T+ F I QR
Sbjct: 64 AAREMKERIAGLVDEEDARSIWVSTFHALSARILRRDVDKIGFTTSFSILDSSGQR---- 119
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++K + D+ + + S+S+FK N +
Sbjct: 120 -----------TLMKHVLNDLNYDSNQYD---------PKSILASISNFK----NALQTP 155
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ AK + KTP DE + + Y L ++D+ DLI +++L P+V
Sbjct: 156 --NDAKTAAKTPF------DEAVSESYDLYERRLTQSQSMDFDDLIMRTIQLFKQAPDVL 207
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN----RITIVGDDDQSIFSFNGADISGF 525
YQ +K I VDE+QDT+ QY L+++LA+ + + +VGD DQSI+ + GAD++
Sbjct: 208 HYYQHKFKYIHVDEYQDTNGAQYKLVEMLAAGDFGSRNLAVVGDSDQSIYGWRGADMNNI 267
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
+F KDF K + L +NYRST+ I+ AA+ +IQ+N++R + KN+ T+N G+ I
Sbjct: 268 LNFEKDFPGAKTVLLEQNYRSTKHILMAANQVIQNNIER-KPKNLWTNNQDGNLIHYYRA 326
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHG 644
+E + +++ KI G S AIL+R ++F+ F KI + + G
Sbjct: 327 QSESDEAHYVLTKIQAGVKKG----RSLNDFAILFRTNAQSRIFEQVFNSNKIQYTMVGG 382
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIRK 702
F+ +K ++ I+A L+ T +D + R+ E KR I I+K+ +
Sbjct: 383 TRFFERKEIQDIVAYLQLTANLDNDTAFERIVN--------EPKRSIGSSSIEKLRSFAA 434
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
+S I + + RK +++ S + S +T +AN +
Sbjct: 435 KKGLSLMKSIVVLDDESRLSKKAQSNFRKFAQMIQVFS-----DQSHFLSLTELANEIFD 489
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
+ + ++ V + +DL S Q + ++ +FLS + + + D++
Sbjct: 490 QTGIREQYV----------KKDDLES--QSRVENLDEFLS---QTKQFDQDYDEEASETN 534
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
N L +D++ + ++ VTL T+H +KGLE+ +VF+ E P
Sbjct: 535 NPL---VDFLGQTALVSDLDSYDESAGQVTLMTVHAAKGLEFPVVFIVGLEEGIFPSAR- 590
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLF-------ILYVMMDANWQLLQPSRFLKEI 935
A+ E+ +EEERRL YVA+TRA+++L+ +LY +N +PS FL EI
Sbjct: 591 ---AMMER-DGLEEERRLAYVAITRAQEELYLTNAFGRLLYGRAQSN----KPSMFLDEI 642
Query: 936 PHHL 939
L
Sbjct: 643 DDSL 646
>gi|407795891|ref|ZP_11142848.1| ATP-dependent DNA helicase PcrA [Salimicrobium sp. MJ3]
gi|407019711|gb|EKE32426.1| ATP-dependent DNA helicase PcrA [Salimicrobium sp. MJ3]
Length = 737
Score = 229 bits (584), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 216/714 (30%), Positives = 335/714 (46%), Gaps = 105/714 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ +N+ Q + A PLL++AG GSGK G++P NILA+TFT
Sbjct: 9 LKGMNEPQ-QKAVAHTEGPLLVMAGAGSGKTRVLTHRIAYLIQEKGVNPWNILAITFTNK 67
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A+ + +STFHS +++ R +++ F +I+
Sbjct: 68 AAREMKERVELLVGPG-AESIWMSTFHSMCVRILRRDIDRIGMDRNF----------SIL 116
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+A ++++ V+K++ + L D R M+ A+ S + +L + +E
Sbjct: 117 DA-----SDQLTVIKQVLKE-LNLDPKNWNPRT---MLGAI---SNAKNELLSPDMYE-- 162
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
++ SG +R +E A I Y L +LD+ DLI ++ L PEV
Sbjct: 163 ----SRVSG-----YR---EEQVAQIYRGYQKKLSKNQSLDFDDLIMKTLVLFEQVPEVL 210
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ ++ + VDE+QDT+ QY L+Q LA + +VGD DQSI+ + GADI+ +F
Sbjct: 211 EYYQRRFQYVHVDEYQDTNHAQYQLVQKLAEKFKNLCVVGDSDQSIYRWRGADITNILTF 270
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
+D+ + I L +NYRST I++AA+ +I HN R + K + TDN G KI E E
Sbjct: 271 EEDYPDAVTILLEQNYRSTEVILDAANHVIDHNTGR-KPKKLWTDNYGGEKIHYHEAGTE 329
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ FI DKI + G +Y +AILYR + + F + IP+ I G F
Sbjct: 330 REESFFIADKIEDLVKQGS---FTYSDMAILYRTNAQSRTVEETFVKANIPYQMIGGTKF 386
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y +K ++ ++A LR DD + RV E KR I ++I K +
Sbjct: 387 YDRKEIKDLLAYLRLISNPNDDLSFERVIN--------EPKRGIGK----TSIEKLQSYA 434
Query: 708 AACDI--FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYL 765
AA DI F A F + V+ MI +++ +SA T + + V +
Sbjct: 435 AAHDISLFDAAAEADFTGISAKAAKAVVNFRRMIDNWTKQQEFLSA--TDLVDEVLETTG 492
Query: 766 LEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVL 825
E+ +L D L + Q L ++ +F S T E+ + D+ + L
Sbjct: 493 YEE----------MLRTDKTLEA--QSRLENIEEFKSV--TMNFEQYSEDKTLVAFLTDL 538
Query: 826 KAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNG 885
D E EH E+SVT+ T+H +KGLE+ +VF+ E P
Sbjct: 539 ALIADIDKADEEEH--------EHSVTMMTLHSAKGLEFPVVFLIGLEENIFPHSRSIMD 590
Query: 886 AVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQL--LQP-SRFLKEIP 936
+EEERRL YV +TRA KKLF+ M + + P SRF+ EIP
Sbjct: 591 E-----EEMEEERRLAYVGITRAEKKLFMTNAKMRTLFGKTNMNPVSRFISEIP 639
>gi|421187953|ref|ZP_15645294.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni AWRIB419]
gi|399966626|gb|EJO01146.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni AWRIB419]
Length = 748
Score = 229 bits (583), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 203/724 (28%), Positives = 339/724 (46%), Gaps = 111/724 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L LND+Q EA PLLI+AG GSGK + P +ILA+TFT
Sbjct: 5 LTGLNDKQKEAVLT-TEGPLLIMAGAGSGKTRVLTHRVAYLVKEKHVDPWSILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++RI +V + A+ + +STFH+ S ++ R +K+ T+ F I QR
Sbjct: 64 AAREMKERIAGLVDEEDARSIWVSTFHALSARILRRDVDKIGFTTSFSILDSSGQR---- 119
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++K + D+ + + S+S+FK N +
Sbjct: 120 -----------TLMKHVLNDLNYDSNQYD---------PKSILASISNFK----NALQTP 155
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ AK + KTP DE + + Y L ++D+ DLI +++L P+V
Sbjct: 156 --NDAKTAAKTPF------DEAVSESYDLYERRLTQSQSMDFDDLIMRTIQLFKQAPDVL 207
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN----RITIVGDDDQSIFSFNGADISGF 525
YQ +K I VDE+QDT+ QY L+++LA+ + + +VGD DQSI+ + GAD++
Sbjct: 208 HYYQHKFKYIHVDEYQDTNGAQYKLVEMLAAGDFGSRNLAVVGDSDQSIYGWRGADMNNI 267
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
+F KDF K + L +NYRST+ I+ AA+ +IQ+N++R + KN+ T+N G+ I
Sbjct: 268 LNFEKDFPGAKTVLLEQNYRSTKHILMAANQVIQNNIER-KPKNLWTNNQDGNLIHYYRA 326
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHG 644
+E + +++ KI G S AIL+R ++F+ F KI + + G
Sbjct: 327 QSESDEAHYVLTKIQAGVKKG----RSLNDFAILFRTNAQSRIFEQVFNSNKIQYTMVGG 382
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIRK 702
F+ +K ++ I+A L+ T +D + R+ E KR I I+K+ +
Sbjct: 383 TRFFERKEIQDIVAYLQLTANLDNDTAFERIVN--------EPKRSIGSGSIEKLRSFAA 434
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
+S I + + RK +++ S + S +T +AN +
Sbjct: 435 KKGLSLMKSIVVLDDESRLSKKAQSNFRKFAQMIQVFS-----DQSHFLSLTELANEIFD 489
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
+ + ++ V + +DL S Q + ++ +FLS + + + D++
Sbjct: 490 QTGIREQYV----------KKDDLES--QSRVENLDEFLS---QTKQFDQDYDEEASETN 534
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
N L +D++ + ++ VTL T+H +KGLE+ +VF+ E P
Sbjct: 535 NPL---VDFLGQTALVSDLDSYDESAGQVTLMTVHAAKGLEFPVVFIVGLEEGIFPSAR- 590
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLF-------ILYVMMDANWQLLQPSRFLKEI 935
A+ E+ +EEERRL YVA+TRA+++L+ +LY +N +PS FL EI
Sbjct: 591 ---AMMER-DGLEEERRLAYVAITRAQEELYLTNAFGRLLYGRAQSN----KPSMFLDEI 642
Query: 936 PHHL 939
L
Sbjct: 643 DDSL 646
>gi|418010484|ref|ZP_12650261.1| ATP-dependent DNA helicase [Lactobacillus casei Lc-10]
gi|410553973|gb|EKQ27961.1| ATP-dependent DNA helicase [Lactobacillus casei Lc-10]
Length = 751
Score = 229 bits (583), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 212/724 (29%), Positives = 329/724 (45%), Gaps = 108/724 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ +ND+Q EA P+LI+AG GSGK ++P NILA+TFT
Sbjct: 7 LKGMNDKQSEAVLA-TEGPVLIMAGAGSGKTRVLTHRIAYLVEEKHVNPWNILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+G +V A+++ +STFH+ +++ R +KL F I +Q
Sbjct: 66 AAREMRERVGKLVDAEIARDIWVSTFHALCVRILRRDIDKLGYNRAFTIADPAEQ----- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER- 408
+ +VK I D F ++ + S + K E
Sbjct: 121 ----------LTLVKHILAD---------------FNLDPKRYDPKSILGVISSAKNELV 155
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D A +P F KI A + Y LRS ALD+ DLI ++ L E
Sbjct: 156 DPQTYANEQASSP--FTKIV----AQVYAEYQKRLRSDQALDFDDLIMQTIVLFEKDKET 209
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDS 527
YQ ++ I VDE+QDT+ QY L+ +LA ++ + +VGD DQSI+ + GA++
Sbjct: 210 LAFYQRKFRYIHVDEYQDTNEAQYQLVHMLAEGYHNLCVVGDADQSIYGWRGANMQNILD 269
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F+KD+ + I L +NYRST+ I+ AA+ +IQ+N R Q K + T+N G KI +
Sbjct: 270 FKKDYPKAQVILLEQNYRSTKTILSAANDVIQNNQNR-QAKTLWTENREGDKITYYRAQS 328
Query: 588 EDAQCAFIIDKI-LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
E + F+I +I E A N YG AILYR + + AF + IP+ + G
Sbjct: 329 ETDEAIFVIRRIEAEIADNH----RKYGDFAILYRTNAQSRAIEEAFVKSNIPYKMVGGH 384
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIR 701
FY +K +R +A R + DD + R+ E K+ + ++ ++ +
Sbjct: 385 KFYDRKEIRDALAYFRLVVNPEDDMSFNRIV-------NEPKRGIGNTSVEKLEAFANEH 437
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
S + AA + + I+G R QL + K MI +L R ++ A +
Sbjct: 438 DWSLLEAAANAELSPIAGK-ARGQLAKFGK------MIQQLGTRRKDLNVTEMMQAILED 490
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
YL RA + + + +L SV Q F + + N D D
Sbjct: 491 SGYLSTLRAAHNLEADTRIENLEELLSVTQ------------GFDSRYQPENEDSD---- 534
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
F+D+++E + ++ VTL T+H +KGLE+ +VF+ E PL
Sbjct: 535 -----IFVDFLAELALLSDQDDVEEDAQEVTLMTLHAAKGLEFPVVFLVGMEEGLFPLSR 589
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHH 938
+ + +EEERRL YV +TRA++KL++ M+ Q SRF++EI
Sbjct: 590 -----ASMDESELEEERRLAYVGITRAKQKLYLSNAYGRMLYGQRQNNPASRFIEEINPD 644
Query: 939 LREV 942
L EV
Sbjct: 645 LLEV 648
>gi|322375316|ref|ZP_08049829.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. C300]
gi|406576529|ref|ZP_11052157.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. GMD6S]
gi|321279579|gb|EFX56619.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. C300]
gi|404461277|gb|EKA07250.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. GMD6S]
Length = 763
Score = 229 bits (583), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 213/732 (29%), Positives = 339/732 (46%), Gaps = 121/732 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R + ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYGL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ ++E
Sbjct: 266 EKDYPQAKVVLLEENYRSTKTILQAANDVIKNNKNR-RPKNLWTQNADGEQIVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+ I E G + + A+LYR + + A + IP+ + G F
Sbjct: 325 QDEAVFVAKTIDEL---GRSQNFLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRK 702
Y +K +R IIA L D+ + R+ E KR ++ I + +++
Sbjct: 382 YSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANMQE 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ +I + I G +S +L E + +L +I+ ++ +V
Sbjct: 434 MSMLDASANIMLSGIKGKAAQSIWDFANMILDLREKLDQL-----TITELVEAV------ 482
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
LE+ VD +LN L S + + ++ +FLS T ++ Q+++ +
Sbjct: 483 ---LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSV--TKNFDDNPDSQEEETGL 530
Query: 823 NVLKAFID---YISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
+ L F++ I++ +T T + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 531 DKLSHFLNDLALIADTDTGSQET------SEVTLMTLHAAKGLEFPVVFIIGMEENVFPL 584
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFL 932
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 585 SR-----AAEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGKTNYNRPTRFI 635
Query: 933 KEIPHHLREVQA 944
EI L E Q
Sbjct: 636 NEISSDLLEYQG 647
>gi|293365526|ref|ZP_06612235.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis ATCC 35037]
gi|291315894|gb|EFE56338.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis ATCC 35037]
Length = 763
Score = 229 bits (583), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 213/732 (29%), Positives = 338/732 (46%), Gaps = 121/732 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R + ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYGL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R+ L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERSILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGD---EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
DVA A+ + GD +I A Y LR ++D+ DLI +++L P
Sbjct: 153 --DVAYAT--------QAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNP 202
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGF 525
+V YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+
Sbjct: 203 DVLTYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNI 262
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
F KD+ N K + L NYRST+ I++AA+ +I++N R + KN+ T N G +II
Sbjct: 263 LDFEKDYPNAKVVLLEENYRSTKTILQAANDVIKNNKNR-RPKNLWTQNPDGEQIIYYRA 321
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHG 644
++E + F+ I E G + + A+LYR + + A + IP+ + G
Sbjct: 322 NDEQDEAVFVAKTIDEL---GRSQNFLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGG 378
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKIST 699
FY +K +R IIA L D+ + R+ E KR ++ I +
Sbjct: 379 TKFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRGFAN 430
Query: 700 IRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANM 759
++ S + A+ +I + I G +S +L E + +L +I+ ++ +V
Sbjct: 431 MQDMSMLDASANIMLSGIKGKAAQSIWDFANMILDLREKLDQL-----TITELVEAV--- 482
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
LE+ +D +LN L S + + ++ +FLS T ++ Q+++
Sbjct: 483 ------LEKTGYID-----ILNAQATLESKAR--VENIEEFLSV--TKNFDDNPDSQEEE 527
Query: 820 GCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 528 TGLDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFIIGMEENVFPL 584
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFL 932
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 585 SR-----AAEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFI 635
Query: 933 KEIPHHLREVQA 944
EI L E Q
Sbjct: 636 NEISSDLIEYQG 647
>gi|317127162|ref|YP_004093444.1| ATP-dependent DNA helicase PcrA [Bacillus cellulosilyticus DSM
2522]
gi|315472110|gb|ADU28713.1| ATP-dependent DNA helicase PcrA [Bacillus cellulosilyticus DSM
2522]
Length = 760
Score = 229 bits (583), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 213/722 (29%), Positives = 337/722 (46%), Gaps = 121/722 (16%)
Query: 245 LQSLNDQQLEAA-CGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTT 288
L LN +Q EA GD PLLI+AG GSGK G+ P +ILA+TFT
Sbjct: 9 LDGLNKEQGEAVKHGD--GPLLIMAGAGSGKTRVLTHRIAYLIGEKGVPPWSILAITFTN 66
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA EM++R+ I +TA+E+ ISTFHS +++ R +++ + F I G Q
Sbjct: 67 KAAREMKERVARIA--STAEEIWISTFHSMCVRILRRDIDRIGTSRNFTILDSGDQ---- 120
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
+ V+KRI + L D R+ L +++
Sbjct: 121 -----------LTVIKRILKE-LNIDVKRYEPRSILGTISS------------------- 149
Query: 409 DGMDVAKASGKTPAEFRKIGD---EIGA-AILENYNGILRSCNALDYHDLISCSVKLLST 464
AK KTP ++ K E+ + E Y L+ ALD+ DLI ++KL
Sbjct: 150 -----AKNELKTPKDYEKTASGPYELTVLKVYEAYTKELKKNQALDFDDLIMTTIKLFKQ 204
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADIS 523
PEV + YQ ++ ++VDE+QDT+ QY L++++A H I +VGD DQSI+ + GADI
Sbjct: 205 VPEVLEYYQRRFRYVMVDEYQDTNRAQYVLVKMMADRHQNICVVGDSDQSIYRWRGADIQ 264
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
SF D+ N I L +NYRST+ I++AA+ +I++N R + K + T N G KI
Sbjct: 265 NILSFENDYPNVNVIMLEQNYRSTKKILQAANEVIENNSNR-KPKKLWTQNDDGEKIKFY 323
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI- 642
E +E + +++ KI E +G I+ILYR +V + + IP+ I
Sbjct: 324 EADSEHDEAQYVVGKIKEATDSGRYRAS---DISILYRTNAQSRVMEEMLVKSNIPYTIV 380
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRK 702
G FY +K ++ ++A LR DD +RR+ + + + ID +
Sbjct: 381 GGTKFYDRKEIKDLLAYLRLVANPDDDISFRRIIN---VPRRGIGATTLAKIDDYAARND 437
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S A ++ +S F+++ LT+ +E I+ V+ + + +P
Sbjct: 438 LSIFQALQEVRHIGLSPRFEKT-LTE------FIEQINGWVQ-----------MQDYLPV 479
Query: 763 KYLLEQRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
L+++ ++D G + +L + +L + + L ++ +FL T +E +DK
Sbjct: 480 TELVDE--LLDKTGYREMLKNEKNLEA--EARLENINEFL----TVTQEFEKTSEDK--- 528
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
L AF+ ++ + E+ V L T+H +KGLE+ +VF+ E P
Sbjct: 529 --TLVAFLTDLALIADIDKVDDDGNQEDQVLLMTLHSAKGLEFPLVFLIGLEEGVFPHSR 586
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQPSRFLKE 934
+EEERRL YV +TRA ++L I LY + N PSRFL E
Sbjct: 587 SLMEE-----AEMEEERRLAYVGITRAEQELCISRARMRTLYGRTNMN----PPSRFLNE 637
Query: 935 IP 936
IP
Sbjct: 638 IP 639
>gi|306831468|ref|ZP_07464626.1| ATP-dependent DNA helicase PcrA [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|304426253|gb|EFM29367.1| ATP-dependent DNA helicase PcrA [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
Length = 771
Score = 229 bits (583), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 211/732 (28%), Positives = 340/732 (46%), Gaps = 120/732 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q+EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDKQVEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R ++ ATA L I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMRERAMAL-NPATADTL-IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+L+N L D RA L + S + L +E
Sbjct: 121 --KRILKN-------------LNLDPKKWNERAILGTI------SNAKNDLLDEVAYENQ 159
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D+ +I A + Y LR A+D+ DLI +++L P+V
Sbjct: 160 AGDMYT--------------QIVAKCYKAYQEELRRSEAMDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 AYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+++I +N R + K + T N+ G +I+ +E
Sbjct: 266 EKDYPEAKVVLLEENYRSTKKILQAANAVINNNRNR-RPKKLWTQNADGEQIVYYRARDE 324
Query: 589 DAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHG 644
+ FI ID I+ ++ A+LYR + + A + IP+ + G
Sbjct: 325 REEAVFIASTIDNIVREEGK------NFKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGG 378
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTI 700
FY +K +R +I+ L D+ Y R+ E K+ V ++ I + +
Sbjct: 379 TKFYSRKEIRDVISYLNVIANTADNISYERIV-------NEPKRGVGPGTLEKIRDFANM 431
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
+ S + A+ +I +SG +G+ ++ + L++ + + +V +V
Sbjct: 432 QNMSLLDASANIM---LSG-------VKGKAAQAVWDLANLLMKLRDDLDQM--TVTELV 479
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
+ +L++ +D L N L S Q + ++ +FL+ + + +D+ G
Sbjct: 480 --EAVLDKTGYLD-----ALRVQNTLES--QARIENIEEFLTVTKNFDDNQEDAPEDESG 530
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIHQSKGLEWDIVFVAKANETEIPL 879
I+ L F++ ++ T D E + VTL T+H +KGLE+ IVF+ E PL
Sbjct: 531 -IDKLSRFLNDLALIAD----TDDGDAETAEVTLMTLHAAKGLEFPIVFLIGMEEGVFPL 585
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFL 932
E +EEERRL YV +TRA + LF+ +AN + L +PSRF+
Sbjct: 586 SR-----AAEDQDELEEERRLAYVGITRAEQLLFV----TNANTRTLFGKTSYNRPSRFI 636
Query: 933 KEIPHHLREVQA 944
+EI L + Q
Sbjct: 637 REIDDELLQYQG 648
>gi|229551867|ref|ZP_04440592.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus LMS2-1]
gi|258539285|ref|YP_003173784.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus Lc 705]
gi|385834924|ref|YP_005872698.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus ATCC 8530]
gi|229314811|gb|EEN80784.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus LMS2-1]
gi|257150961|emb|CAR89933.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus Lc 705]
gi|355394415|gb|AER63845.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus ATCC 8530]
Length = 750
Score = 229 bits (583), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 213/728 (29%), Positives = 330/728 (45%), Gaps = 116/728 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ +ND+Q EA P+LI+AG GSGK ++P NILA+TFT
Sbjct: 7 LKGMNDKQAEAVLA-TEGPVLIMAGAGSGKTRVLTHRIAYLVEEKNVNPWNILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+G +V A+++ +STFH+ +++ R +KL F I +Q
Sbjct: 66 AAREMRERVGKLVDPEIARDIWVSTFHALCVRILRRDIDKLGYNRAFTIADPAEQ----- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER- 408
+ +VK I D F ++ + S K E
Sbjct: 121 ----------LTLVKHILAD---------------FNLDPKRYDPKSILGAISGAKNELI 155
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D + +P F K A + Y LRS ALD+ DLI ++ L PE
Sbjct: 156 DPQTYSDEQANSP--FTKTV----AQVYAEYQKRLRSDQALDFDDLIMQTIVLFEKDPET 209
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDS 527
YQ ++ I VDE+QDT+ QY L+ +LA ++ + +VGD DQSI+ + GA++
Sbjct: 210 LGFYQRKFRYIHVDEYQDTNEAQYRLVHMLAEGYHNLCVVGDADQSIYGWRGANMQNILD 269
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F+KD+ + I L +NYRST+ I+ AA+ +I++N+ R Q K + T+N+ G KI +
Sbjct: 270 FKKDYPKAQVILLEQNYRSTKTILSAANDVIKNNLNR-QAKTLWTENATGDKITYYRAQS 328
Query: 588 EDAQCAFIIDKI----LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-I 642
E + F+I +I EH YG AILYR + + AF + IP+ +
Sbjct: 329 ETDEAIFVIRRIEAEMAEHHR-------KYGDFAILYRTNAQSRAIEEAFVKSNIPYKMV 381
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH-----IDKI 697
G FY +K +R +A R + DD + R+ E KR I + ++
Sbjct: 382 GGHKFYDRKEIRDALAYFRLVVNPDDDMSFNRIVN--------EPKRGIGNTSVAKLEAF 433
Query: 698 STIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVA 757
+ S + AA + + ISG R L Q K MI +L +R ++ A
Sbjct: 434 ANQHDWSLLEAAANAELSPISGK-ARGNLAQFGK------MIQRLGQRRKDLNVTEMMQA 486
Query: 758 NMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQD 817
+ YL RA + + +L SV Q F A + N D D
Sbjct: 487 ILDDSGYLGTLRAANTLEAETRVENLEELLSVTQ------------GFDARYQPENEDSD 534
Query: 818 KKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
F+D+++E + + ++ VTL T+H +KGLE+ +VF+ E
Sbjct: 535 ---------IFVDFLAELALLSDQDEVEEDAQEVTLMTLHAAKGLEFPVVFLVGMEEGLF 585
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKE 934
PL A++E +EEERRL YV +TRA++KL++ M+ Q SRF++E
Sbjct: 586 PLSR---AAMDE--GELEEERRLAYVGITRAKQKLYLTNAYARMLYGQRQNNPASRFIEE 640
Query: 935 IPHHLREV 942
I L ++
Sbjct: 641 IDPELLDI 648
>gi|260774508|ref|ZP_05883422.1| ATP-dependent DNA helicase Rep [Vibrio metschnikovii CIP 69.14]
gi|260610635|gb|EEX35840.1| ATP-dependent DNA helicase Rep [Vibrio metschnikovii CIP 69.14]
Length = 672
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 203/734 (27%), Positives = 357/734 (48%), Gaps = 97/734 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNSRQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM+DR+G +GKA ++ L +STFH+ L + R + L F ++
Sbjct: 62 EMKDRVGQTLGKAESRGLIVSTFHTLGLTIIRREYKALGLKPGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L D +R L ++S++K N
Sbjct: 110 ---DQDQLALLKELTESQLEGDKDL--LR--------QLLSTISNWK----NDMVSPQQA 152
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
A A G+ F A E Y +++ NALD+ DLIS V+LL EV +
Sbjct: 153 KAIAKGEQQQLF--------AFCYECYQKQMQAYNALDFDDLISLPVRLLRDHQEVRTRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q + ++VDE+QDT+ QY L+++L R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QSRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVVGDDDQSIYSWRGARPQNLVQLGQD 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F + K I+L +NYRST I+ AA+ LI +N + K + +D G K+ + +NED +
Sbjct: 265 FSHLKLIKLEQNYRSTSRILRAANILIANNPHVYE-KVLFSDIPDGEKLKVIIANNEDHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +++ H + Y AILYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AERVTAELIAHKF---LNRTEYRDYAILYRGNHQSRLIEKSLMQNRVPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ ++E ++ + + +R S +A+
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PKREIGPATLEKLGSYANMRGKSLFAASF 437
Query: 711 DI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQR 769
++ +SG L R+ L I+ R ++ A+ + V ++ + +L E
Sbjct: 438 ELGLEQHLSG----RGLDNVRRFTQWLVEITDNAERGNTVEALRSLVRDIHYEDWLYETS 493
Query: 770 AVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFI 829
+ ++ N + + +++AD+ E N DQ++K LK +
Sbjct: 494 SSAKAAEMRMKN----VSELYAWIVADL------------EGDNYDQEEK----TLKEVV 533
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
++ R+ R ++ D+ ++V L T+H SKGLE+ V++ A E +P H+ +++E
Sbjct: 534 QRLTLRDMME-RGEQDDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILP--HQ--TSIDE 588
Query: 890 KGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAEQ 946
+ +VEEERRL+YV +TRA+++L F + +L++P SRFL E+P+ E + ++
Sbjct: 589 E--NVEEERRLMYVGITRAQRELTFTVCKERRQFGELIKPTQSRFLDELPYDDVEWETKK 646
Query: 947 SVQDQHENIPEGTA 960
V Q E + +G A
Sbjct: 647 KVLSQEERMNKGQA 660
>gi|417927596|ref|ZP_12570984.1| ATP-dependent DNA helicase PcrA [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
gi|340765470|gb|EGR87996.1| ATP-dependent DNA helicase PcrA [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
Length = 772
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 207/729 (28%), Positives = 335/729 (45%), Gaps = 114/729 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q +A PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAQA-VQTTEGPLLIMAGAGSGKTRVLTHRMAYLIDEKFVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R ++ K+ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKER--ALALNPATKDTLIATFHSMCVRILRREADHIGYNRNFTIVDPGEQR---- 117
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R+ L + S + L +E
Sbjct: 118 -----------TLMKRI-LKQLNLDPKKWNERSILGTI------SNAKNDLLDEKGYEAQ 159
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D+ +I A + Y LR ALD+ DLI +++L + P+V
Sbjct: 160 AADMYS--------------QIVARCYKAYQEELRRSEALDFDDLIMMTLRLFDSNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 AYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + K + L NYRST+ I++AA+ +I +N R + K + T N+ G +++ ++E
Sbjct: 266 EKDYPDAKVVLLEENYRSTKKILQAANDVINNNRNR-RPKKLWTQNADGEQLVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASIC-SYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
+ F+ I SN + ++ A+LYR + + A + IP+ I G
Sbjct: 325 RDEAVFVASTI----SNMAQELGKNFKDFAVLYRTNAQSRTIEEALLKSNIPYTMIGGTK 380
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIRK 702
FY +K +R +IA L D+ + R+ E K+ V +D + + +
Sbjct: 381 FYSRKEIRDLIAYLTIVANPADNISFERIV-------NEPKRGVGPGTLDKLRQFAYESN 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + AA ++F + + G + + + L I +R++ + IT +A
Sbjct: 434 QSLLEAASNLFMSPLKG--------KAAQAMTDLAGILNQLRQDLETMS-ITDLA----- 479
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
+ LLE+ +D L N L S Q + ++ +FLS + + ++D+ G
Sbjct: 480 EALLEKTGYLDS-----LRLQNTLES--QARIENIEEFLSVTKNFDESSASQEEDETGVD 532
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ + D +T+ +T+ + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 533 RLGRFLNDLALIADTDDSQTEAAE----VTLMTLHAAKGLEFPVVFLIGMEEGVFPLSR- 587
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
+E +EEERRL YV +TRA + LF M +AN + L +P+RFL EI
Sbjct: 588 ----ASEDPDELEEERRLAYVGITRAEEVLF----MTNANTRTLFGKSSYNRPTRFLNEI 639
Query: 936 PHHLREVQA 944
L Q
Sbjct: 640 SEELLSYQG 648
>gi|251782494|ref|YP_002996796.1| DNA helicase II [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
gi|386317094|ref|YP_006013258.1| DNA helicase II [Streptococcus dysgalactiae subsp. equisimilis ATCC
12394]
gi|417752917|ref|ZP_12401077.1| ATP-dependent DNA helicase PcrA [Streptococcus dysgalactiae subsp.
equisimilis SK1249]
gi|242391123|dbj|BAH81582.1| DNA helicase II [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
gi|323127381|gb|ADX24678.1| DNA helicase II [Streptococcus dysgalactiae subsp. equisimilis ATCC
12394]
gi|333771199|gb|EGL48155.1| ATP-dependent DNA helicase PcrA [Streptococcus dysgalactiae subsp.
equisimilis SK1249]
Length = 772
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 206/729 (28%), Positives = 334/729 (45%), Gaps = 114/729 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q +A PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAQA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R ++ K+ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKER--ALALNPATKDTLIATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+L+ I K +L T S + L +E
Sbjct: 121 --KRILKQLNIDPKKWNERSILGT-------------------ISNAKNDLLDEKGYEAQ 159
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D+ +I A + Y LR ALD+ DLI +++L + P+V
Sbjct: 160 AADMYS--------------QIVARCYKAYQEELRRSEALDFDDLIMMTLRLFDSNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 AYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + K + L NYRST+ I++AA+ +I +N R + K + T N+ G +++ ++E
Sbjct: 266 EKDYPDAKVVLLEENYRSTKKILQAANDVINNNRNR-RPKKLWTQNADGEQLVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASIC-SYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
+ F+ I SN + ++ A+LYR + + A + IP+ I G
Sbjct: 325 RDEAVFVASTI----SNMAQELGKNFKDFAVLYRTNAQSRTIEEALLKSNIPYTMIGGTK 380
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIRK 702
FY +K +R +IA L D+ + R+ E K+ V +D + + +
Sbjct: 381 FYSRKEIRDLIAYLTIVANPADNISFERIV-------NEPKRGVGPGTLDKLRQFAYESN 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + AA ++F + + G + + + L I +R++ + IT +A
Sbjct: 434 QSLLEAASNLFMSPLKG--------KAAQAMTDLAGILNQLRQDLETMS-ITDLA----- 479
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
+ LLE+ +D L N L S Q + ++ +FLS + + ++D+ G
Sbjct: 480 EALLEKTGYLDS-----LRLQNTLES--QARIENIEEFLSVTKNFDESSASQEEDETGVD 532
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ + D +T+ +T+ + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 533 RLGRFLNDLALIADTDDSQTEAAE----VTLMTLHAAKGLEFPVVFLIGMEEGVFPLSR- 587
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
+E +EEERRL YV +TRA + LF M +AN + L +P+RFL EI
Sbjct: 588 ----ASEDPDELEEERRLAYVGITRAEEVLF----MTNANTRTLFGKSSYNRPTRFLNEI 639
Query: 936 PHHLREVQA 944
L Q
Sbjct: 640 SEELLSYQG 648
>gi|259047692|ref|ZP_05738093.1| ATP-dependent DNA helicase PcrA [Granulicatella adiacens ATCC
49175]
gi|259035883|gb|EEW37138.1| ATP-dependent DNA helicase PcrA [Granulicatella adiacens ATCC
49175]
Length = 773
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 205/723 (28%), Positives = 333/723 (46%), Gaps = 102/723 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
++ +N +Q EA PLL++AG GSGK + P NILA+TFT
Sbjct: 8 IKGMNPRQKEAVM-HTQGPLLVMAGAGSGKTRVLTHRMAYILAEEEVQPWNILAITFTNK 66
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AASEM++R+ ++VG+ A ++ +STFHS +++ R E++ F I G Q A+
Sbjct: 67 AASEMKERVSALVGE-QAGDMWVSTFHSMCVRILRRDCERIGLAKSFTIIDSGDQLSAM- 124
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++I+ I +D G + S+S+ K N FE
Sbjct: 125 --------KRIMQKLNIDSDKFDARG---------------ILASISNAK----NNFED- 156
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
A+ KT A F D+I A Y R +D+ DLI +VKL P+V
Sbjct: 157 ----AETFAKTHANFM---DQITAKCYVEYEAEKRKNMTVDFDDLIMLTVKLFKEHPDVL 209
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ + I VDE+QDT+ QY L+Q+LA I +VGD DQSI+ + GAD+ SF
Sbjct: 210 AYYQQKFHYIHVDEYQDTNHAQYLLVQLLADKFKNICVVGDADQSIYGWRGADMENILSF 269
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
D+ K + L +NYRST+ I++AA+ +I++N R + K + T+N G KI C
Sbjct: 270 EHDYPQAKVVLLEQNYRSTKTILKAANQVIENNQNR-KPKELWTENEAGDKITYY-CAAS 327
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ + + + ++ N Y A+LYR + + + +PF + G F
Sbjct: 328 GYEESRYVMRTIQKMVNFDG--YDYSDFAVLYRSNAQSRTLEEDLLKANMPFKMVGGQRF 385
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y + ++ ++A LR + DD +RRV A ++ + I+ ++ + + S +
Sbjct: 386 YERMEIKDLLAYLRLLVNPTDDFSFRRVVNA---PKRGIGGKSIEKLEDFAQMHGFSLLE 442
Query: 708 AACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYL-- 765
A+ + ISG G+ + ++IS L + + +S M+ Y+
Sbjct: 443 ASAETTLNGISG-------KAGKGLADFAKLISDLTKMQEFVSLTDLIEEVMIKSGYIAS 495
Query: 766 LEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVL 825
LEQ ++ D DN ++ L+ +F +F + EE + Q + L
Sbjct: 496 LEQAHTMEADA----RIDN-----MREFLSVAKEFEEKRFDSEAEESALVQ----FLTDL 542
Query: 826 KAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNG 885
D +E ET + + +TL T+H +KGLE+ +VF+ + P
Sbjct: 543 SLVTDMENEEET---------SASQITLMTLHAAKGLEFPVVFLVGMEDGIFPSARTL-- 591
Query: 886 AVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHHLREV 942
++G EEERRL YV +TRA KKLF+ ++ Q + SRF++EI L +
Sbjct: 592 ---QEGDE-EEERRLAYVGITRAEKKLFMTRAYSRLLYGKTQHYRESRFMQEIDDKLLQK 647
Query: 943 QAE 945
+ E
Sbjct: 648 EGE 650
>gi|163839113|ref|YP_001623518.1| DNA helicase II [Renibacterium salmoninarum ATCC 33209]
gi|162952589|gb|ABY22104.1| DNA helicase II [Renibacterium salmoninarum ATCC 33209]
Length = 797
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 224/741 (30%), Positives = 334/741 (45%), Gaps = 121/741 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L LN +Q EAA +PLLIVAG GSGK P ILA+TFT
Sbjct: 31 LHGLNPEQ-EAAVTHAGSPLLIVAGAGSGKTRVLSHRIAYLLATGRAHPGQILAITFTNK 89
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EMR+RI +++G A AK + ISTFHS +++ R A + S F IY R I
Sbjct: 90 AAAEMRERIAALIGDA-AKNMWISTFHSSCVRILRREASTVGLNSSFSIYDSADSLRLIT 148
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R L+ L KR F AM +S+ K N+ D
Sbjct: 149 LIARGLD----LDPKR-------------------FAPKAMQH-KISALK----NELIDD 180
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D A+ P E + A + Y LR NALD+ DLI+ +V L FP V
Sbjct: 181 --DAFAATATDPFE------QGVAEVYRGYTQRLRQANALDFDDLIAQTVWLFRAFPGVA 232
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR--------ITIVGDDDQSIFSFNGAD 521
Y+ ++ ++VDE+QDT+ QY+L++ + +T+VGD DQSI++F GAD
Sbjct: 233 DYYRRRFRHVMVDEYQDTNHAQYALVKEIVGPAEGSGDEPAELTVVGDSDQSIYAFRGAD 292
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII 581
I F KD+ N + I+L +NYRST+ I+ AA+++I+ N R +K + T G KII
Sbjct: 293 IRNIVEFEKDYPNARTIKLEQNYRSTQTILSAANAVIEKNPDRP-VKRLWTAEGDGEKII 351
Query: 582 IKECHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKI 638
NE + FI ID++ + A P G +AI YR + + +
Sbjct: 352 GYVAENEHEEARFIAEEIDRLQDEADFRP------GDVAIFYRTNAQSRSIEEILMRVGL 405
Query: 639 PFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH---- 693
P+ + G FY +K ++ +A LR + DD RR+ E K+ + D
Sbjct: 406 PYRVVGGTRFYERKEIKDALAYLRVLVNPEDDVNLRRIL-------NEPKRGIGDRAEGA 458
Query: 694 IDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI 753
+ ++ + SF++A A T + + K++ L ++ S S
Sbjct: 459 VAALAERERSSFMAALRHAEDAPAIATRSLNAVNGFVKLIDDLTEVA-------STSGAA 511
Query: 754 TSVANMVPQKYLLEQ-RAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
T++ ++ Q LE RA D +D L L+A V ++ K EG
Sbjct: 512 TALEAVLEQTGYLETLRASSD-------PQDESRVENLAELVAVVREYERD-----KPEG 559
Query: 813 NVDQDKKGCINVLKAFIDYI-----SERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIV 867
++ +G V A D I S+ E +R VTL T+H +KGLE+ V
Sbjct: 560 SLTDFLEGVALVADA--DQIPDAPGSDTEAAVAEARRL---GVVTLMTLHTAKGLEFPAV 614
Query: 868 FVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---Q 924
F+ P + A + K + EERRL YV +TRARK+L++ + + W Q
Sbjct: 615 FLTGMEHGIFP---QARSATDAK--ELAEERRLAYVGLTRARKRLYLTRAEVRSLWGQSQ 669
Query: 925 LLQPSRFLKEIPHHLREVQAE 945
S F+ E+P +L E + E
Sbjct: 670 YNPASPFIDEVPANLIEWKRE 690
>gi|374307496|ref|YP_005053927.1| ATP-dependent DNA helicase PcrA [Filifactor alocis ATCC 35896]
gi|291166490|gb|EFE28536.1| ATP-dependent DNA helicase PcrA [Filifactor alocis ATCC 35896]
Length = 725
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 224/728 (30%), Positives = 352/728 (48%), Gaps = 138/728 (18%)
Query: 245 LQSLNDQQLEA---ACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFT 287
+ LN +QL+A A G+M LI+AG GSGK G+SPSNILA+TFT
Sbjct: 3 IAELNKEQLDAVQTAGGNM----LILAGAGSGKTRVITYRIAYLINHGVSPSNILALTFT 58
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA+EM+DR+ SI+ + + I TFHS L++ R + EK+ EF+IY Q
Sbjct: 59 NKAANEMKDRLSSILSEEFSPSW-IGTFHSICLRILRMNIEKVNYKKEFVIYDTYDQTAI 117
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
I + ++ L IS + + S F+ +S FK N+F+
Sbjct: 118 IKDCMKQL---------NISPKI----------KPSFFLS------KISDFK----NRFK 148
Query: 408 RD---GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLST 464
G+D K S + I + Y L S NA+D+ D+I +VK+L
Sbjct: 149 SPNECGLDKEKDSSSIQIQ----------EIYDMYQKRLYSANAIDFDDIIFYTVKILEE 198
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADIS 523
+ E+ YQ +K I+VDE+QDT+ +QY ++IL+ H + +VGDDDQSI+ + GAD+
Sbjct: 199 YEEISFFYQGKFKHILVDEYQDTNYLQYRFIKILSEKHQNLCVVGDDDQSIYRWRGADVR 258
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
F KD + K I+L +NYRST+ I+ A +I N+ R K + T+N G II+K
Sbjct: 259 NILEFEKDHKDTKIIKLEQNYRSTQTILNVAYDVISKNIGRMN-KKLWTENGTGELIILK 317
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH 643
+ ++E + A++ ++I E S+ IA+LYR + + AF + +P+ +
Sbjct: 318 KLYSEKEEGAWVANQIKELVDKFDYSL---DEIAVLYRANAQSRAIEDAFVLKDMPYQVF 374
Query: 644 -GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRK 702
G+ FY +K ++ ++A LR D +RR+ KR I I TI K
Sbjct: 375 GGIKFYDRKEIKDLLAYLRLISNTSDISSFRRIINI--------PKRGIG----IKTIEK 422
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT------SV 756
F +A D S T + LL+ E++ V+ ++ +I+ S+
Sbjct: 423 IEF-NALSD------SKTV--------YEYLLSDELLDFSVKVRKNLKNLISMMETFRSM 467
Query: 757 ANMVPQKYLLEQRAVVDFDGGKLLNED------NDLRSVLQYLLADVTDFLSTKFTAAKE 810
+ ++P L+E ++D G + E+ N+ L+ L+ DF TK KE
Sbjct: 468 SELIPLDELIE--TILDHTGYRKELEEEKTEEANNRLENLREFLSVAKDFYQTK---EKE 522
Query: 811 EGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVA 870
EG L F+ +S TE + E V+L T+H +KGLE+ VF+
Sbjct: 523 EG------------LSDFLFGLS-LATEQ---DEDETEGKVSLMTLHSAKGLEFRAVFIV 566
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQ 927
E P+ + AV ++ +EEERRL YV +TRA++KL++ Y M+ +
Sbjct: 567 GMEEGLFPI----SRAVYDE-YELEEERRLCYVGITRAKEKLYLTYTGERMIYGKTEKRV 621
Query: 928 PSRFLKEI 935
SRF+K+I
Sbjct: 622 ISRFVKDI 629
>gi|320546849|ref|ZP_08041154.1| ATP-dependent DNA helicase PcrA [Streptococcus equinus ATCC 9812]
gi|320448513|gb|EFW89251.1| ATP-dependent DNA helicase PcrA [Streptococcus equinus ATCC 9812]
Length = 770
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 214/733 (29%), Positives = 335/733 (45%), Gaps = 122/733 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK I+P NILA+TFT
Sbjct: 5 LNGMNDKQAEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKFINPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R ++ ATA L I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMRERAMAL-NPATADTL-IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQR---- 117
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D RA L + S + L +E
Sbjct: 118 -----------TLMKRI-LKTLNLDPKKWNERAILGTI------SNAKNDLLDEVAYENQ 159
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D+ +I A + Y LR A+D+ DLI +++L P+V
Sbjct: 160 AGDMYT--------------QIVAKCYKAYQAELRQSEAMDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+++I +N R + K + T N+ G +I+ +E
Sbjct: 266 EKDYPEAKVVMLEENYRSTKKILQAANAVINNNRNR-RPKKLWTQNADGEQIVYYRARDE 324
Query: 589 DAQCAFI---IDKIL-EHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
+ F+ ID I+ E N + A+LYR + + A + IP+ +
Sbjct: 325 REEAVFVASTIDNIVREQGKN-------FKDFAVLYRTNAQSRTIEEALLKSNIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTI- 700
G FY +K +R +I+ L D+ Y R+ E KR + ++KI T
Sbjct: 378 GTKFYSRKEIRDVISYLNVIANTADNISYERIVN--------EPKRGVGPGTLEKIRTFA 429
Query: 701 --RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
+ S + A+ +I +SG +G+ E+ + L+ + SV
Sbjct: 430 NQQNMSLLDASANIM---LSG-------VKGKAAQAVWELSNLLMNLRDDLDKY--SVTE 477
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
+V + +L++ +D L N L S Q + ++ +FL+ + + + +D+
Sbjct: 478 LV--EAVLDKTGYLD-----ALRVQNTLES--QARIENIEEFLTVTKNFDENQDDAPEDE 528
Query: 819 KGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
G + + D +T+ T+ + VTL T+H +KGLE+ IVF+ E P
Sbjct: 529 SGIDKLSRFLNDLALIADTDDGDTETAE----VTLMTLHAAKGLEFPIVFLIGMEEGVFP 584
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRF 931
L E +EEERRL YV +TRA + LF+ +AN + L +PSRF
Sbjct: 585 LSR-----AAEDQDELEEERRLAYVGITRAEQLLFV----TNANTRTLFGKTSYNRPSRF 635
Query: 932 LKEIPHHLREVQA 944
++EI L + Q
Sbjct: 636 IREIDDELLQYQG 648
>gi|387819538|ref|YP_005679885.1| ATP-dependent DNA helicase UvrD/PcrA [Clostridium botulinum H04402
065]
gi|322807582|emb|CBZ05157.1| ATP-dependent DNA helicase UvrD/PcrA [Clostridium botulinum H04402
065]
Length = 738
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 206/707 (29%), Positives = 342/707 (48%), Gaps = 144/707 (20%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EAA + PLLI+AG GSGK I PS ILA+TFT AA
Sbjct: 7 LNKEQYEAAIT-IDGPLLILAGAGSGKTRVLTYRIAHMIENLDIYPSKILAITFTNKAAG 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++RI ++VG + + +STFHS +++ R +KL F IY Q+ + + +
Sbjct: 66 EMKERIKALVGDV-VEGMWVSTFHSSCVRILRREIDKLGYDKNFTIYDTYDQKTLVKQCM 124
Query: 353 RLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
L N+K + + I + T G+ ++D +
Sbjct: 125 EELNINDKEITDREI----INTIGN------------------------------QKDNL 150
Query: 412 DVAKASGKTPAEFRKIG------DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+P EF+KI D I A + Y L++ NALD+ DLI +V+L T
Sbjct: 151 -------ISPKEFKKISNGNYRKDRIADAYIL-YQKKLKTNNALDFDDLIYKTVELFKTN 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISG 524
+V + YQ +K I+VDE+QDT+ QY L+++LA H + +VGDDDQ I+ + GADIS
Sbjct: 203 KDVLEFYQRKFKYIMVDEYQDTNKSQYELVKLLALVHRNMCVVGDDDQCIYEWRGADISN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+F KD+ K I+L +NYRS I+ AA+ +I++N +R K ++T+N +G+KI +
Sbjct: 263 ILNFEKDYKEAKVIKLEQNYRSKGNILNAANEVIKNNSQRKN-KVLRTENENGNKIKVFR 321
Query: 585 CHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN 641
+++ + F+ I KI++ + S+ A+LYR ++F+ F +R IP+
Sbjct: 322 AYSDIDEAKFVASEIKKIIKDSER------SFNDFAVLYRTNAQSRIFEDVFMKRDIPYR 375
Query: 642 -IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTI 700
I G+ FY +K ++ ++A L+ DD RR+ KR I +T+
Sbjct: 376 LIGGLKFYDRKEIKDLMAYLKLINNPLDDISLRRIINV--------PKRSIGD----ATV 423
Query: 701 RKCSFISAACD------IFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRR--EPSISAV 752
+K + D + A T + +T +K + +++ +R+ E S+SA+
Sbjct: 424 KKVQEFANEMDECMYSVLLDADQILTLSQRSITSIKKF---VSIMNSFIRKKDEISVSAI 480
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDN--DLRSV--LQYLLADVTDFLSTKFTAA 808
I K +LE+ + +L N N D+ V L+ L++ DF
Sbjct: 481 I---------KEILEETGYL----KELKNSKNPDDVSRVENLKELVSAAADF-------- 519
Query: 809 KEEGNVDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIV 867
E + D+ L AF++ ++ + +++ +N +SV + T+H +KGLE+ +V
Sbjct: 520 -ERESEDKS-------LGAFLEKVALVTDIDNY----DENSDSVAMMTVHSAKGLEFPVV 567
Query: 868 FVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI 914
F+ P + +EE RRL YVA+TRA+++L+I
Sbjct: 568 FMVGMENGIFPGTQSLSDP-----KEMEESRRLCYVAITRAKEQLYI 609
>gi|385812624|ref|YP_005849015.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum CECT 5716]
gi|299783521|gb|ADJ41519.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum CECT 5716]
Length = 756
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 203/738 (27%), Positives = 337/738 (45%), Gaps = 119/738 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ +ND+Q EA PLL++AG GSGK + P +ILA+TFT
Sbjct: 7 LEGMNDKQSEAVL-TTEGPLLVMAGAGSGKTRVLTHRIAYLIEERHVLPWHILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ ++G+A ++ +STFH+ +++ R E+L F I +QR I
Sbjct: 66 AAREMKERVAKLLGEA-GNDVWVSTFHALCVRILRRDIEQLGYNRAFTIADTSEQRTLI- 123
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+ E + I K +L+
Sbjct: 124 --KRICEEQNIDTKKFEPRQLLS------------------------------------- 144
Query: 410 GMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+ AK + + PA F K D + A + E Y L LD+ DLI +++L
Sbjct: 145 AISNAKNAMEDPATFSKNHQRPFDRMVARVYEAYQKELERNQTLDFDDLIMKTIELFKKA 204
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISG 524
PE YQD + I VDE+QDT+ QY L+ +LA + I +VGD DQSI+ + GA+++
Sbjct: 205 PETLTYYQDKFHYIHVDEYQDTNDAQYELVHMLAEKYENICVVGDADQSIYGWRGANMNN 264
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+F D+ N + L +NYRST+ I++AA+ +I +N++R KN+ T+N G KI
Sbjct: 265 ILNFEHDYPNAHSVMLEQNYRSTQTILKAANEVIANNLERKD-KNLWTENGAGEKISYYR 323
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
NE + FI+ KI E + Y AILYR +V + F + +P+ +
Sbjct: 324 AQNEHDEAQFIVKKIQEERAKHN---YQYQDFAILYRTNAQSRVIEETFLKSTVPYTMVG 380
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI-----DHIDKIS 698
G FY + +R ++A L + D + RV KR I + + + +
Sbjct: 381 GHRFYDRMEIRDLLAYLTLIVNPLDSMSFERVVNT--------PKRGIGMTSVERLREFA 432
Query: 699 TIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
++AA ++ A R+++ + +++ L+ +K++ IT + +
Sbjct: 433 QESNLPLLAAAQNVQNANAISARTRNKIEEFGQLITALQDEAKVLS--------ITDLTD 484
Query: 759 MVPQK--YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQ 816
V ++ YL E L +D L+ Q ++ +F S E +
Sbjct: 485 QVLERTGYLAE------------LQKDKTLQG--QTRRENLEEFKSV----TAEYDRQHE 526
Query: 817 DKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
D +G ++ L+ D+++ + + E +VTL T+H +KGLE+ ++F+ E
Sbjct: 527 DDEG-MDHLQKLTDFLAGLALVSDQDDVDEAEPAVTLMTLHAAKGLEFPVIFLIGMEEGV 585
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLK 933
PL +EEERRL YV +TRA+KKL+I M+ + Q +PS F++
Sbjct: 586 FPLSRAMT-----DNKELEEERRLAYVGITRAKKKLYITNAFSRMLYGHIQRNRPSEFVE 640
Query: 934 EIPHHLREVQAEQSVQDQ 951
EI L +Q+E Q +
Sbjct: 641 EITPEL--MQSENQNQGE 656
>gi|419782388|ref|ZP_14308197.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis SK610]
gi|383183492|gb|EIC76029.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis SK610]
Length = 763
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 212/729 (29%), Positives = 336/729 (46%), Gaps = 115/729 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R + ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYGL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I ++E
Sbjct: 266 EKDYPNAKVVLLEENYRSTKTILQAANDVIKNNKNR-RPKNLWTQNADGEQIFYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+ I E G + + +LYR + + A + IP+ + G F
Sbjct: 325 QDEAVFVAKTIDEL---GRSQNFLHKDFVVLYRTNAQSRTIEEALLKSNIPYTMVGGTKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRK 702
Y +K +R IIA L D+ + R+ E KR ++ I + +++
Sbjct: 382 YSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANLQE 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ +I + I G +S +L E + +L SI+ ++ +V
Sbjct: 434 MSMLDASANIMLSGIKGKAAQSIWDFANMILDLREQLDQL-----SITELVEAV------ 482
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
LE+ V+ +LN L S + + ++ +FLS T ++ Q+++ +
Sbjct: 483 ---LEKTGYVE-----ILNTQATLESKAR--VENIEEFLSV--TKNFDDNPDSQEEETGL 530
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
N L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 531 NKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFIIGMEENVFPLSR- 586
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+ EI
Sbjct: 587 ----AAEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTSYNRPTRFINEI 638
Query: 936 PHHLREVQA 944
L E Q
Sbjct: 639 SSDLLEYQG 647
>gi|419766136|ref|ZP_14292351.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK579]
gi|383354412|gb|EID31977.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK579]
Length = 763
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 210/729 (28%), Positives = 338/729 (46%), Gaps = 115/729 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R+ + ++S+ K D
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERS--------ILGTISNAK--------ND 149
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+D + + + +I + A Y LR ++D+ DLI +++L P+V
Sbjct: 150 LIDDVAYAAQAGDMYTQIVSQCYTA----YQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ ++E
Sbjct: 266 EKDYPQAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+ I E G + + A+LYR + + A + IP+ + G F
Sbjct: 325 LDEAVFVAKSIDEL---GRSQNFLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRK 702
Y +K +R IIA L D+ + R+ E KR +++ I + ++
Sbjct: 382 YSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGMVEKIRDFANLQN 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ +I + I G +S VL E + +L SI+ ++ S+
Sbjct: 434 MSMLDASANIMLSGIKGKAAQSIWDFANMVLDLREQLDQL-----SITELVESI------ 482
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
LE+ A VD +LN L S + + ++ +FLS + +V +++ G
Sbjct: 483 ---LEKTAYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTSDVSEEETGLD 531
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ + D +T+ + + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 532 KLSRFLNDLALIADTDSGSQETSE----VTLMTLHAAKGLEFPVVFLIGMEENVFPLSR- 586
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+ EI
Sbjct: 587 ----AAEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFINEI 638
Query: 936 PHHLREVQA 944
L E Q
Sbjct: 639 SSDLLEYQG 647
>gi|418975329|ref|ZP_13523238.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis SK1074]
gi|383348700|gb|EID26659.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis SK1074]
Length = 763
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 214/732 (29%), Positives = 340/732 (46%), Gaps = 121/732 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L +V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNHDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ ++E
Sbjct: 266 EKDYPNAKVVLLEENYRSTKTILQAANDVIKNNKNR-RPKNLWTQNADGEQIVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+ I E G + + A+LYR + + A + IP+ + G F
Sbjct: 325 QDEAVFVAKTIDEL---GRSQNFLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRK 702
Y +K +R IIA L D+ + RV E KR ++ I ++++
Sbjct: 382 YSRKEIRDIIAYLNLIANLSDNISFERVIN--------ETKRGIGPGTVEKIRDFASLQD 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ +I + I G +S +L E + +L +I+ ++ +V
Sbjct: 434 MSMLDASANIMLSGIKGKAAQSIWEFANMILDLREQLDQL-----TITELVEAV------ 482
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
LE+ VD +LN L S + + ++ +FLS T ++ Q+++ +
Sbjct: 483 ---LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSV--TKNFDDNPDSQEEETGL 530
Query: 823 NVLKAFID---YISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
+ L F++ I++ ++ T + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 531 DKLSRFLNDLALIADTDSGSQET------SEVTLMTLHAAKGLEFPVVFIIGMEENVFPL 584
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFL 932
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 585 SR-----AAEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFI 635
Query: 933 KEIPHHLREVQA 944
EI L E Q
Sbjct: 636 NEISSDLLEYQG 647
>gi|145222451|ref|YP_001133129.1| ATP-dependent DNA helicase PcrA [Mycobacterium gilvum PYR-GCK]
gi|315442898|ref|YP_004075777.1| ATP-dependent DNA helicase PcrA [Mycobacterium gilvum Spyr1]
gi|145214937|gb|ABP44341.1| ATP-dependent DNA helicase PcrA [Mycobacterium gilvum PYR-GCK]
gi|315261201|gb|ADT97942.1| ATP-dependent DNA helicase PcrA [Mycobacterium gilvum Spyr1]
Length = 780
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 214/735 (29%), Positives = 331/735 (45%), Gaps = 106/735 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LN QQ +A + TPLLIVAG GSGK + +LA+TFT
Sbjct: 19 LEGLNPQQRQAVLHE-GTPLLIVAGAGSGKTAVLTRRIAYLLAARDVGVGQVLAITFTNK 77
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EMR+R+ +VG A+ + +STFHS +++ R+ A L S F IY RR +
Sbjct: 78 AAAEMRERVVGLVGP-RARNMWVSTFHSTCVRILRNQASLLPGLNSNFSIYDADDSRRLL 136
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
+ ++ + L KR S +L S+S+ K N+
Sbjct: 137 L----MIGKDMGLDTKRHSPRLLAN--------------------SISNLK----NELIG 168
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
A+AS R + D G Y LR+ NALD+ DLI +V +L FP++
Sbjct: 169 PEQAAAEASEAADDLARIVADVYG-----EYQRRLRAANALDFDDLIGETVAVLQAFPQI 223
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-----------RITIVGDDDQSIFSF 517
Q Y+ ++ I+VDE+QDT+ QY L++ L + +VGD DQSI++F
Sbjct: 224 AQYYRRRFRHILVDEYQDTNHAQYVLVRELTGSGATESDESVAPAELCVVGDADQSIYAF 283
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GA I + F +DF + I L +NYRST+ I+ AA+S+I N R + K + TD G
Sbjct: 284 RGATIRNIEDFERDFPSATTILLEQNYRSTQTILNAANSVIARNAGRRE-KRLWTDAGEG 342
Query: 578 SKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERK 637
I+ NE + FI +I + + P SY +A+ YR S + + F
Sbjct: 343 ELIVGYVADNEHDEARFIAQEIDALSDSIPD--FSYNDVAVFYRTNNSSRAIEEVFIRAG 400
Query: 638 IPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDK 696
IP+ + GV FY ++ +R I+A LR D RR+ ++ + D +
Sbjct: 401 IPYKVVGGVRFYERREIRDIVAYLRVLDNPGDAVSMRRILNT-------PRRGIGDRAEA 453
Query: 697 ISTIRK----CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV 752
+ +F A + RS+ V L ++ L + + +
Sbjct: 454 CVAVHAENTGLNFNDALVAAAEGNVPMLNTRSEKAIAGFVALLDDLRGGL---DGELGDL 510
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
+ +V + Y E A D L+ N+L SV TD + + A +E
Sbjct: 511 VEAVLDRT--GYRAELEASSDPQDLARLDNLNELVSVAHEF---STDLANARALAEGDED 565
Query: 813 NVDQDKKGCINVLKAFIDYIS-----ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIV 867
D+D VL AF++ +S + EH VT+ T+H +KGLE+ +V
Sbjct: 566 AQDEDVPDT-GVLAAFLERVSLVADADDIPEH-------GSGVVTMMTLHTAKGLEFPLV 617
Query: 868 FVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW--QL 925
FV + P + + + EERRL YV +TRAR++L++ + ++W +
Sbjct: 618 FVTGWEDGMFPHMRALGDPL-----ELSEERRLAYVGITRARQRLYLSRAKVRSSWGQPM 672
Query: 926 LQP-SRFLKEIPHHL 939
L P SRFL+EIP L
Sbjct: 673 LNPESRFLREIPQEL 687
>gi|88855836|ref|ZP_01130499.1| ATP-dependent DNA helicase II [marine actinobacterium PHSC20C1]
gi|88815160|gb|EAR25019.1| ATP-dependent DNA helicase II [marine actinobacterium PHSC20C1]
Length = 799
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 222/750 (29%), Positives = 327/750 (43%), Gaps = 146/750 (19%)
Query: 245 LQSLNDQQLEAACGDMSTP-LLIVAGPGSGK---------GI------SPSNILAMTFTT 288
L LN +Q +A + P LLIVAG GSGK G+ PS ILA+TFT
Sbjct: 24 LDGLNPRQRQAV--EYRGPSLLIVAGAGSGKTSVLTRRIAGLLRSQEAWPSQILAITFTN 81
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA+EMR+R+ +IVG A A+ + ISTFHS +++ R AE + F IY +
Sbjct: 82 KAAAEMRERVAAIVGNA-AEGMWISTFHSACVRILRREAEAFGFSKNFTIYDSADSKA-- 138
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
LL+ ++K + DM L + A S +L + F R
Sbjct: 139 -----LLKR----ILKELDADMY-----------GLTVSKAANRISGLKNELTDVDGFAR 178
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D A+ PAE + + + Y L NA D+ DLI +V L FP +
Sbjct: 179 D------ANLSDPAEKKFL------EVFRRYTRGLSDANAFDFDDLIGQTVYLFRAFPHI 226
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQIL------------------ASHNRI-----T 505
YQ +K I+VDE+QDT+ QYSL++ L S N + T
Sbjct: 227 AATYQRRFKHILVDEYQDTNHAQYSLIRELTRPPAPEQFETSPGVLVQGSTNELEAASLT 286
Query: 506 IVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRC 565
+VGD DQSI++F GADI F +DF I L +NYRST+ I++AA+++I HN R
Sbjct: 287 VVGDSDQSIYAFRGADIRNIVEFERDFPRSTVILLEQNYRSTQTILDAANAVISHNFDRK 346
Query: 566 QLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVS 625
K + T G KI+ ++ + F+ D+I + G +Y +A+ YR
Sbjct: 347 D-KKLFTTVGAGDKIVGFTGYSGHDEAQFVADEIQKMHDEG----VAYKDVAVFYRTNSQ 401
Query: 626 GKVFQTAFRERKIPFNI-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEK 684
+ + F +P+ + G FY + ++ L D RR+
Sbjct: 402 TRALEEIFIRAALPYRVLGGTKFYERAEIKDAFGYLIAVANPADPLALRRIMNT------ 455
Query: 685 EEKKRVIDHIDKISTIRKCSFISAACDIFGAKISGTFKRS-QLTQGRKVLLTLEMISKLV 743
KR I + + + A D G + + + +L G KV + +++L
Sbjct: 456 --PKRGIGPATEAA-------LQAWADDRGMTLRDAMRNAGELGLGPKVTKAIVDLARL- 505
Query: 744 RREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST 803
+ V+ V P + L E LL +R + L D D
Sbjct: 506 -----LDEVMAKVETAKPAEILTE-----------LLERSGYVRVLRSSL--DPQD---- 543
Query: 804 KFTAAKEEGNVDQDKKGCINVLKAF---------IDYISERETEHFRTQRHDNENSVTLT 854
A+ E NVD+ I V K F ID+++E D+ +V+L
Sbjct: 544 ---EARAE-NVDE----LIAVTKEFGKNNPDGTLIDFLTEVSLVAAADDLDDSSGTVSLM 595
Query: 855 TIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI 914
T+H +KGLE+D VF+ E +P H + NE G EERRL YV +TRARK+LF+
Sbjct: 596 TLHTAKGLEYDAVFLTGVEEDLLP--HRMS--ANEPGGPA-EERRLFYVGITRARKRLFL 650
Query: 915 LYVMMDANW---QLLQPSRFLKEIPHHLRE 941
M A + + PSR+L+EIP L E
Sbjct: 651 SLAMTRAQFGEVNVAMPSRYLQEIPADLIE 680
>gi|260889954|ref|ZP_05901217.1| ATP-dependent DNA helicase PcrA [Leptotrichia hofstadii F0254]
gi|260860560|gb|EEX75060.1| ATP-dependent DNA helicase PcrA [Leptotrichia hofstadii F0254]
Length = 735
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 201/718 (27%), Positives = 351/718 (48%), Gaps = 109/718 (15%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTF 286
S L LN++Q +AA + P+LI+AG GSGK GISP NILA+TF
Sbjct: 2 SSILDELNEEQRKAA-EKIEGPVLILAGAGSGKTRTVTYRIAHMVKEIGISPLNILALTF 60
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR 346
T AA EM++R +++G A L +STFHSFS++L ++++E++ F IY Q+
Sbjct: 61 TNKAAREMKERATALIGHE-ANNLVVSTFHSFSVRLLKTYSERIGYGRNFNIYDVDDQKS 119
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC-QYNK 405
++ +I DM D ++ KL + +K
Sbjct: 120 ---------------IITKIKKDMGIKDND-----------------NVQPGKLANRISK 147
Query: 406 FERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+ G+ + + + + R + + I + Y+ +L++ NA+D+ DL+ + KLL
Sbjct: 148 LKEQGIGIKEL--EREIDMRIPANRLFGEIYQKYDEVLKANNAMDFSDLLLNARKLLDD- 204
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISG 524
V + Q+ ++ I+VDE+QDT+ +QY ++ ++A R I +VGD+DQSI++F GA+I+
Sbjct: 205 AFVLERIQERYQYIVVDEYQDTNDIQYEMINLIAEKYRNICVVGDEDQSIYAFRGANINN 264
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+F +D+ ++L RNYRST+ I++ A+ LI++N K + K + TD S G KI I
Sbjct: 265 ILNFERDYKEAFTVKLERNYRSTKKILDTANELIKNN-KSSKGKTLWTDGSDGEKIKIYN 323
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH- 643
+ FI+ ++ + +G Y + ILYR +V + IP+ I+
Sbjct: 324 AMTVYDEADFIVTEMKKKKRDG----ADYKDMTILYRTNAQSRVLEEKLLSANIPYKIYG 379
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
G+ F+++K ++ I+A L D+ + R+ + ++ ++ ++ I +++ +
Sbjct: 380 GMQFFQRKEIKDILAYLSLLNNKNDNHNFYRIIN---VPKRSVGEKTLEKIQEVANEKNI 436
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
S + A I + ++L L + S L E SI + + ++ +
Sbjct: 437 SMLEALHYIDEIPVRAA---TKLALKEFYNLMQSIYSSL--EEMSIKEIFDEI--LIRTR 489
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
Y+ ++ D N+++ +R++ + LL +T+ +K+
Sbjct: 490 YI---DSIED-------NKEDRVRNI-EELLNSITEI----------------EKQNPSM 522
Query: 824 VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
L ++D IS + D+EN V L TIH SKGLE+D VF+A + P +
Sbjct: 523 SLNEYLDMIS---LSSATDEMEDDENYVKLMTIHSSKGLEFDYVFLAGMEDGLFPSI--- 576
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW----QLLQPSRFLKEIPH 937
+ + +EEERRL YVA+TRA+K+LFI Y W L +PSRF+ E+
Sbjct: 577 --SFDAPEEELEEERRLCYVAITRAKKELFISYSSSRKIWGKDDNLRRPSRFIYEMKQ 632
>gi|417938474|ref|ZP_12581772.1| ATP-dependent DNA helicase PcrA [Streptococcus infantis SK970]
gi|343391564|gb|EGV04139.1| ATP-dependent DNA helicase PcrA [Streptococcus infantis SK970]
Length = 762
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 209/729 (28%), Positives = 338/729 (46%), Gaps = 115/729 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R + ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYGL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIIDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R+ + ++S+ K N D
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERS--------ILGTISNAK----NDLIDD 153
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
++A + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 154 EAYASQAG--------DLYTDIVAKCYTTYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +II ++E
Sbjct: 266 EKDYPNAKVVLLEENYRSTKTILQAANDVIKNNKNR-RPKNLWTQNADGEQIIYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+ I E G + A+LYR + + A + IP+ + G F
Sbjct: 325 QDEAVFVAKTIDEL---GRTHNFLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRK 702
Y +K +R IIA L D+ + R+ E KR ++ I + ++
Sbjct: 382 YSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANLQD 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ +I + I G +S +L E + +L +I+ ++ +V
Sbjct: 434 MSMLDASANIMLSGIKGKAAQSIWDFANMILDLREQLDRL-----TITELVEAV------ 482
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
LE+ + VD +LN L S + + ++ +FLS T ++ Q+++ +
Sbjct: 483 ---LEKTSYVD-----ILNAQATLESKAR--VENIEEFLSV--TKNFDDNPESQEEETGL 530
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 531 DKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFIIGMEENVFPLSR- 586
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
+E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+ EI
Sbjct: 587 ----ASEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTSYNRPTRFINEI 638
Query: 936 PHHLREVQA 944
L Q
Sbjct: 639 SSDLLSYQG 647
>gi|262373227|ref|ZP_06066506.1| ATP-dependent DNA helicase Rep [Acinetobacter junii SH205]
gi|262313252|gb|EEY94337.1| ATP-dependent DNA helicase Rep [Acinetobacter junii SH205]
Length = 679
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 209/751 (27%), Positives = 355/751 (47%), Gaps = 116/751 (15%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LND+QLEA + PLL++AG GSGK GI I AMTFT AA
Sbjct: 7 LNDKQLEA-MKYVQGPLLVLAGAGSGKTSVITRKIAFLVQQCGIPAHRITAMTFTNKAAR 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G ++ + AK L++STFH+F L L R + L + F +I++A
Sbjct: 66 EMKERVGKLLSREEAKGLSVSTFHTFGLNLLRIELKHLPLKANF----------SILDAD 115
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
KRI D++ D G L + AM S L +
Sbjct: 116 D---------CKRILMDLMQRDNLSGAESKEL-IAKAMKKISDWKNDLVIPEQ------- 158
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
A ++ +TP + + A + + Y LR+ NA+D+ DLI +LL EV ++
Sbjct: 159 -AHSTCETPEDVQL------AHLYQLYERNLRAYNAVDFDDLIVMPTRLLQENAEVRDKW 211
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY+L+++L + T VGDDDQSI+++ GA + D
Sbjct: 212 QNRVRYLLVDEYQDTNTAQYTLVKLLVGVMGQFTAVGDDDQSIYAWRGAKPENMALLKDD 271
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F N K I+L +NYRST I++AA+++I++N K + +D HG I + C N+D +
Sbjct: 272 FHNLKVIKLEQNYRSTSRILKAANAVIENNPHIFD-KKLWSDKGHGETIRVITCLNDDDE 330
Query: 592 CAFIIDKILEHA-SNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYR 649
++ ++ H NG ++ AILYR +V +T R+ +IP+ + G +F+
Sbjct: 331 AERVVKDLITHKLMNGK----NWKDYAILYRGNFQARVLETQLRQMQIPYKLSGGQSFFA 386
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI--DKISTIRK---CS 704
+ ++ +++ LR + DD + R+ KR I + +K+ + S
Sbjct: 387 RAEIKDVMSYLRLIINPEDDSAFLRIINT--------PKRAIGPVTLEKLGLFAQENTLS 438
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK- 763
++A+ D +++ + TQ + + I+ R + V M+ +
Sbjct: 439 LLTASSD---QRLAMVLPKKAATQLHEF---ADFIATFTRELLDDDEPVPKVRQMINEAG 492
Query: 764 ---YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
Y+ EQ A + K+ N ++ L + +Q L+ + TD D D+K
Sbjct: 493 YIDYVREQAATPAQEKTKIDNIES-LYTSIQNLI-NRTD---------------DVDEKN 535
Query: 821 CINVLKAFI--DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
+V++ + D + +++ E ++ + V L T+H +KGLE+ V++ E +P
Sbjct: 536 IESVIRKLVLLDMLEQQQEE-------EDTDKVNLLTLHAAKGLEFPYVYMIGLEEELLP 588
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDAN---WQLLQPSRFLKEI 935
H+ N +E ++EEERRL+YV +TRAR+ L + N + + PSRFL E+
Sbjct: 589 --HK-NSIASE---TIEEERRLMYVGITRARQGLTLTLAEQRKNGGQMRQMTPSRFLDEL 642
Query: 936 PHHLREVQAEQSVQDQHENIPEGTAQFTINL 966
P E + + + E Q+ NL
Sbjct: 643 PQDDLEWHGRKKKLAPNVDPKEQAQQYLANL 673
>gi|59713128|ref|YP_205904.1| DNA helicase and single-stranded DNA-dependent ATPase [Vibrio
fischeri ES114]
gi|59481229|gb|AAW87016.1| DNA helicase and single-stranded DNA-dependent ATPase [Vibrio
fischeri ES114]
Length = 671
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 204/734 (27%), Positives = 351/734 (47%), Gaps = 97/734 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN QQ EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPQQDEA-VKFVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G +GK ++ L +STFHS L + R + L + F ++
Sbjct: 62 EMKERVGQTLGKQESRGLMVSTFHSLGLDIIRREYKVLGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ + DG +R L S+S++K D +
Sbjct: 110 ---DQDQLALLKELTEKQI--DGDKDLLR--------QLLSSISNWK--------NDMLT 148
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
A+ G +E D++ A E Y +++ NALD+ DLIS V LL T EV + +
Sbjct: 149 PAQVKGVARSE----QDQLFAFCYEMYLNQMKAYNALDFDDLISLPVLLLRTNQEVRERW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q + ++VDE+QDT+ QY L+++L R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QMKIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLNED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
+ N + I+L +NYRST I+ AA+ LI +N + K + ++ G +I I +++ +
Sbjct: 265 YPNLRVIKLEQNYRSTSRILRAANILIANNPHAFE-KRLFSEIPDGEQIKILTAKDDEHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
++ +++ H + Y A+LYR ++ + + + ++P+ I G +F+ +
Sbjct: 324 AERVVGELIAHRF---LNRTDYKDYAVLYRGNHQSRLIEKSLMQNRVPYKISGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR DD + RV +E ++ + + +R S ++
Sbjct: 381 AEIKDIMAYLRLLTNPDDDNAFLRVVNT---PRREIGPVTLEKLGSYANMRGKSLFESSF 437
Query: 711 DIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRA 770
+I + T L R+ + IS+ R ++ AV + V ++ + +L E
Sbjct: 438 EI---GLEQTLSGRGLESLRRFCHWIVSISENAERGNTVEAVRSLVKDIHYEDWLYETST 494
Query: 771 VVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAFI 829
+ + +V+D S + A EG N D ++K LK +
Sbjct: 495 SA---------------KAAEMRMKNVSDLYS--WIVADLEGDNYDNEEK----TLKEVV 533
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
++ R+ R + D + V L T+H SKGLE+ V++ A E +P H+ +++E
Sbjct: 534 QKLTLRDMME-RGEDEDGADQVQLMTLHASKGLEFPYVYLIGAEEGILP--HQ--TSIDE 588
Query: 890 KGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLL--QPSRFLKEIPHHLREVQAEQ 946
+VEEERRL YV +TRA+K+L F L +L+ +PSRFL+E+PH + + ++
Sbjct: 589 D--NVEEERRLAYVGITRAQKELTFTLCKERRQYGELIRPEPSRFLEELPHDDLDWEMKK 646
Query: 947 SVQDQHENIPEGTA 960
Q E + G A
Sbjct: 647 PKPTQEERMERGKA 660
>gi|400975395|ref|ZP_10802626.1| ATP-dependent DNA helicase [Salinibacterium sp. PAMC 21357]
Length = 800
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 223/750 (29%), Positives = 327/750 (43%), Gaps = 146/750 (19%)
Query: 245 LQSLNDQQLEAACGDMSTP-LLIVAGPGSGK---------GI------SPSNILAMTFTT 288
L LN +Q EA + P LLIVAG GSGK G+ PS ILA+TFT
Sbjct: 24 LDGLNPRQREAV--EYRGPSLLIVAGAGSGKTSVLTRRIAGLLRSREAWPSEILAITFTN 81
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA+EMR+R+ +IVG TA+ + ISTFHS +++ R AE + F IY +
Sbjct: 82 KAAAEMRERVAAIVGN-TAEGMWISTFHSACVRILRREAEAFGFSKNFTIYDSADSKA-- 138
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
LL+ ++K + DM L + S +L + F R
Sbjct: 139 -----LLKR----ILKELDADMY-----------GLTVSKVANRISGLKNELTDVDGFAR 178
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D A+ PAE + + I Y L NA D+ DLI +V L FP++
Sbjct: 179 D------ANLSDPAEKKFL------EIFRRYTRGLSDANAFDFDDLIGQTVYLFRAFPQI 226
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-----------------------ASHNRIT 505
YQ +K I+VDE+QDT+ QYSL++ L A +T
Sbjct: 227 AATYQRRFKHILVDEYQDTNHAQYSLIRELTRPPAPEQFTSSQGMLVQDNSSIADAASLT 286
Query: 506 IVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRC 565
+VGD DQSI++F GADI F +DF I L +NYRST+ I++AA+++I +N R
Sbjct: 287 VVGDSDQSIYAFRGADIRNIVEFERDFPRSTVILLEQNYRSTQTILDAANAVISNNFDRK 346
Query: 566 QLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVS 625
K + T G KI+ ++ + FI D+I + G +Y +A+ YR
Sbjct: 347 D-KKLFTTIGEGDKIVGFTGYSGHDEAQFIADEIQKLHDEG----VAYKDVAVFYRTNSQ 401
Query: 626 GKVFQTAFRERKIPFNI-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEK 684
+ + F +P+ + G FY + ++ L D RR+
Sbjct: 402 TRALEEIFIRAALPYRVLGGTKFYERAEIKDAFGYLIAVANPADPLALRRIMNT------ 455
Query: 685 EEKKRVIDHIDKISTIRKCSFISAACDIFGAKISGTFKRS-QLTQGRKVLLTLEMISKLV 743
KR I + S + A D G + + + +L G KV + +++L
Sbjct: 456 --PKRGIGPATE-------SALQAWADDRGLTLRDAMRSAGELGLGPKVTKAIIDLARL- 505
Query: 744 RREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST 803
+ V+ V P L E LL+ +R++ L D D
Sbjct: 506 -----LDDVMAKVETAKPADILTE-----------LLDGSGYVRALRASL--DPQD---- 543
Query: 804 KFTAAKEEGNVDQDKKGCINVLKAF---------IDYISERETEHFRTQRHDNENSVTLT 854
A+ E NVD+ I V K F +D+++E D+ +V+L
Sbjct: 544 ---EARAE-NVDE----LIAVTKEFGKNNPEGTLLDFLTEVSLVAAADDLDDSSGTVSLM 595
Query: 855 TIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI 914
T+H +KGLE+D VF+ E +P H + NE G EERRL YV +TRARK+LF+
Sbjct: 596 TLHTAKGLEYDAVFLTGVEEDLLP--HRM--SANEPGGPA-EERRLFYVGITRARKRLFL 650
Query: 915 LYVMMDANW---QLLQPSRFLKEIPHHLRE 941
M A + + PSRFL+EIP L E
Sbjct: 651 SLAMTRAQFGEVNVAMPSRFLQEIPADLIE 680
>gi|283782861|ref|YP_003373615.1| ATP-dependent DNA helicase PcrA [Gardnerella vaginalis 409-05]
gi|283441838|gb|ADB14304.1| putative ATP-dependent DNA helicase PcrA [Gardnerella vaginalis
409-05]
Length = 1023
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 210/734 (28%), Positives = 334/734 (45%), Gaps = 101/734 (13%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFT 287
K L LN QQ +A D LLI AG GSGK G PS ILA+TFT
Sbjct: 139 KLLDGLNPQQSQAVQYD-GPALLIGAGAGSGKTRVLTRRIAWILSQKGAWPSQILAITFT 197
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA+EMR+R+ ++G + A + +STFHS +++ R + + S F IY R
Sbjct: 198 NKAAAEMRERLSKLIG-SEANTMWVSTFHSACVKILRRSGQYIGLKSGFSIYDTSDCERL 256
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
V+++ E + +KR + + G + SL L + +K
Sbjct: 257 ----VKIIATELNVDIKRFTPRSIL--GKISDCKNSLITWREQLDMYANDYKPGVA---- 306
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
G +A A G + A + A I Y L NA+D+ DLI +V+L+ PE
Sbjct: 307 --GQQIAHA-GNSEAVY--------ATIYAEYQHRLSQANAVDFDDLIMRTVQLMREVPE 355
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN----------------RITIVGDDD 511
Q Y+ ++ I+VDE+QDT+ QY L++ LA + IT+VGD D
Sbjct: 356 AAQYYRHKFRYILVDEYQDTNHAQYELIRELAGVDVKQNSANPSQQNNTPASITVVGDSD 415
Query: 512 QSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQ 571
QSI++F GADI F KDF N I L +NYRST+ I++AA+++I HN R + K +
Sbjct: 416 QSIYAFRGADIRNIQDFEKDFPNATTIMLEQNYRSTQTILDAANAVISHNQGR-KPKKLW 474
Query: 572 TDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQT 631
T G+ I + + A++ +I A +Y +AI+YR + +
Sbjct: 475 TALGKGTPITGYAADSAQQEAAWVAQEIARLAGE---EGVAYSDMAIMYRANAQSRSLED 531
Query: 632 AFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV 690
A + +P+ + G FY ++ V+ +A L++ DD RR+ + ++ R
Sbjct: 532 ALVKAGLPYQLVGGTKFYERREVKDALAYLQSMANPDDDVNMRRILN---VPKRGLGARA 588
Query: 691 IDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSIS 750
+ + + SF A + + T ++L + R+++ L I+ + + S
Sbjct: 589 EALLTLYAQTQGVSFWQALEHLESIEGMPTRTATKLKEFRELMHNL--ITCMQNDDSKPS 646
Query: 751 AVITSVANMVPQKYLLE--QRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAA 808
VI S+ N LLE QR+ D ++ D S LQ + A+
Sbjct: 647 KVIDSILN---DSGLLEDLQRSEDPQDAARV-----DNLSQLQSVAAEY----------- 687
Query: 809 KEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVF 868
E+ D G + D ++ + D VTL T+H +KGLE+ +VF
Sbjct: 688 -EQNTPDASVAGFLETTALVAD------SDQLPDENEDT-GKVTLMTLHTAKGLEYPVVF 739
Query: 869 VAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QL 925
+ + P + A+ + G + EERRL YV +TRA+++L++ + A W Q
Sbjct: 740 LTGMEQGTFP----HSRALEDDG-ELCEERRLAYVGITRAKQRLYVTRAAVRAQWGQAQD 794
Query: 926 LQPSRFLKEIPHHL 939
+ PS+FL EIP +L
Sbjct: 795 MLPSQFLDEIPDNL 808
>gi|168183573|ref|ZP_02618237.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum Bf]
gi|237796712|ref|YP_002864264.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum Ba4 str.
657]
gi|182673320|gb|EDT85281.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum Bf]
gi|229262342|gb|ACQ53375.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum Ba4 str.
657]
Length = 738
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 206/701 (29%), Positives = 337/701 (48%), Gaps = 132/701 (18%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EAA + PLLI+AG GSGK I PS ILA+TFT AA
Sbjct: 7 LNKEQYEAATT-IDGPLLILAGAGSGKTRVLTHRIAHMIENLNIYPSKILAITFTNKAAG 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++RI ++VG + + +STFHS +++ R +KL F IY Q+ + + +
Sbjct: 66 EMKERIKALVGDVV-EGMWVSTFHSSCVRILRREIDKLGYDKNFTIYDTYDQKTLVKQCM 124
Query: 353 RLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
L N+K + + I + + S FK + +D
Sbjct: 125 EELNINDKEITDREIINTISNQKDNL---------------ISPKEFKKNSNGNYRKD-- 167
Query: 412 DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQE 471
KI D A IL Y L++ NALD+ DLI +V+L T E +
Sbjct: 168 --------------KIAD---AYIL--YQKKLKTNNALDFDDLIYKTVELFKTNKEALEF 208
Query: 472 YQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRK 530
YQ +K I+VDE+QDT+ QY L+++LAS H I +VGDDDQ I+ + GADIS +F K
Sbjct: 209 YQRKFKYIMVDEYQDTNKSQYELVKLLASVHRNICVVGDDDQCIYEWRGADISNILNFEK 268
Query: 531 DFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDA 590
D+ K I+L +NYRS I+ AA+ +I++N +R K ++T+N +G+KI + +++
Sbjct: 269 DYKEAKVIKLEQNYRSKGNILNAANEVIKNNSQRKN-KVLRTENENGNKIKVFRAYSDID 327
Query: 591 QCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
+ F+ I KI++ + S+ ++LYR ++F+ F +R IP+ I G+
Sbjct: 328 EAKFVASEIKKIIKDSEK------SFNDFSVLYRTNAQSRIFEDVFMKRDIPYRLIGGLK 381
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFI 706
FY +K ++ ++A L+ DD RR+ KR I +T++K
Sbjct: 382 FYDRKEIKDLMAYLKLINNPLDDISLRRIINV--------PKRSIGD----ATVKKVQEF 429
Query: 707 SAACD------IFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRR--EPSISAVITSVAN 758
+ D + A T + +T +K + +++ +R+ E S+SA+I
Sbjct: 430 ANEMDECMYSVLLDADQILTLSQRSITSIKKF---VSIMNSFIRKKDEISVSALI----- 481
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDN--DLRSV--LQYLLADVTDFLSTKFTAAKEEGNV 814
K +LE+ + +L N N D+ V L+ L++ DF E +
Sbjct: 482 ----KEILEETGYL----KELKNSKNPDDVSRVENLKELVSAAADF---------ERESE 524
Query: 815 DQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
D+ L AF++ ++ + +++ +N +SV + T+H +KGLE+ +VF+
Sbjct: 525 DKS-------LGAFLEKVALVTDIDNY----DENSDSVAMMTVHSAKGLEFPVVFMVGME 573
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI 914
P + +EE RRL YVA+TRA+++L+I
Sbjct: 574 NGIFPGTQSLSDP-----KEMEESRRLCYVAITRAKEQLYI 609
>gi|148381216|ref|YP_001255757.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. ATCC
3502]
gi|153933103|ref|YP_001385591.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. ATCC
19397]
gi|153936248|ref|YP_001388997.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. Hall]
gi|168179081|ref|ZP_02613745.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum NCTC 2916]
gi|421835740|ref|ZP_16270408.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum CFSAN001627]
gi|148290700|emb|CAL84830.1| ATP-dependent DNA helicase [Clostridium botulinum A str. ATCC 3502]
gi|152929147|gb|ABS34647.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. ATCC
19397]
gi|152932162|gb|ABS37661.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. Hall]
gi|182670183|gb|EDT82159.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum NCTC 2916]
gi|409742525|gb|EKN41896.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum CFSAN001627]
Length = 738
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 206/707 (29%), Positives = 342/707 (48%), Gaps = 144/707 (20%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EAA + PLLI+AG GSGK I PS ILA+TFT AA
Sbjct: 7 LNKEQYEAAIT-IDGPLLILAGAGSGKTRVLTYRIAHMIENLNIYPSKILAITFTNKAAG 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++RI ++VG + + +STFHS +++ R +KL F IY Q+ + + +
Sbjct: 66 EMKERIKALVGDV-VEGMWVSTFHSSCVRILRREIDKLGYDKNFTIYDTYDQKTLVKQCM 124
Query: 353 RLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
L N+K + + I + T G+ ++D +
Sbjct: 125 EELNINDKEITDREI----INTIGN------------------------------QKDNL 150
Query: 412 DVAKASGKTPAEFRKIG------DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+P EF+KI D I A + Y L++ NALD+ DLI +V+L T
Sbjct: 151 -------ISPKEFKKISNGNYRKDRIADAYIL-YQKKLKTNNALDFDDLIYKTVELFKTN 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISG 524
+V + YQ +K I+VDE+QDT+ QY L+++LA H + +VGDDDQ I+ + GADIS
Sbjct: 203 KDVLEFYQRKFKYIMVDEYQDTNKSQYELVKLLALVHRNMCVVGDDDQCIYEWRGADISN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+F KD+ K I+L +NYRS I+ AA+ +I++N +R K ++T+N +G+KI +
Sbjct: 263 ILNFEKDYKEAKVIKLEQNYRSKGNILNAANEVIKNNSQRKN-KVLRTENENGNKIKVFR 321
Query: 585 CHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN 641
+++ + F+ I KI++ + S+ A+LYR ++F+ F +R IP+
Sbjct: 322 AYSDIDEAKFVASEIKKIIKDSER------SFNDFAVLYRTNAQSRIFEDVFMKRDIPYR 375
Query: 642 -IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTI 700
I G+ FY +K ++ ++A L+ DD RR+ KR I +T+
Sbjct: 376 LIGGLKFYDRKEIKDLMAYLKLINNPLDDISLRRIINV--------PKRSIGD----ATV 423
Query: 701 RKCSFISAACD------IFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRR--EPSISAV 752
+K + D + A T + +T +K + +++ +R+ E S+SA+
Sbjct: 424 KKVQEFANEMDECMYSVLLDADQILTLSQRSITSIKKF---VSIMNSFIRKKDEISVSAL 480
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDN--DLRSV--LQYLLADVTDFLSTKFTAA 808
I K +LE+ + +L N N D+ V L+ L++ DF
Sbjct: 481 I---------KEILEETGYL----KELKNSKNPDDVSRVENLKELVSAAADF-------- 519
Query: 809 KEEGNVDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIV 867
E + D+ L AF++ ++ + +++ +N +SV + T+H +KGLE+ +V
Sbjct: 520 -ERESEDKS-------LGAFLEKVALVTDIDNY----DENSDSVAMMTVHSAKGLEFPVV 567
Query: 868 FVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI 914
F+ P + +EE RRL YVA+TRA+++L+I
Sbjct: 568 FMVGMENGIFPGTQSLSDP-----KEMEESRRLCYVAITRAKEQLYI 609
>gi|118443009|ref|YP_878906.1| ATP-dependent DNA helicase PcrA [Clostridium novyi NT]
gi|118133465|gb|ABK60509.1| ATP-dependent DNA helicase PcrA, putative [Clostridium novyi NT]
Length = 760
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 215/737 (29%), Positives = 348/737 (47%), Gaps = 139/737 (18%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EAA + P+L++AG GSGK GI NILA+TFT AA
Sbjct: 7 LNKEQYEAATA-IEGPVLVLAGAGSGKTRVLTYRIAHMIEDLGIPQYNILAITFTNKAAG 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM+DRI +V + +STFHS +++ R +KL F IY Q+ + + +
Sbjct: 66 EMKDRIKKLVSN-NIDSMWVSTFHSSCVRILRREIDKLGYNKNFAIYDSTDQKNLVKQCM 124
Query: 353 RLLE------NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
+ L NEK ++ K G + +L +Y K
Sbjct: 125 KELNISDKDINEKEIISK------------IGKQKDNLITAE-------------EYKK- 158
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
+ +FRK + I L Y L++ NALD+ DLI +V+L P
Sbjct: 159 ------------RNEKDFRK--NRIADVYLL-YQKKLKNSNALDFDDLIFKTVELFKKHP 203
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGF 525
EV + YQ+ +K I+VDE+QDT+ QY L+++L A+H I +VGDDDQ I+ + GADI
Sbjct: 204 EVLEFYQNKFKYIMVDEYQDTNKTQYQLVKMLAAAHRNIFVVGDDDQCIYQWRGADIKNI 263
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
F KD+ K ++L NYRS I+ AA+++I+HN +R K ++T N +G KI I
Sbjct: 264 LDFEKDYPEAKVVKLEENYRSKANILNAANTVIKHNSQRKN-KVLRTQNENGEKIKIYRA 322
Query: 586 HNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-I 642
+++ + FI ++I L N SY AILYR +VF+ F +R IP+ I
Sbjct: 323 YSDMDEGLFISNEIKRLIKKENR-----SYKDFAILYRTNAQSRVFEDVFMKRDIPYRII 377
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH--IDKI--- 697
G+ FY +K ++ I A L+ DD +R+ KR I + KI
Sbjct: 378 GGLKFYDRKEIKDITAYLKFINNLQDDISLKRIINV--------PKRAIGAATVSKIQDF 429
Query: 698 -STIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSV 756
+ + +C + S D+ I G KRS + + +I+ R + + SV
Sbjct: 430 ANYMDECMY-SVLLDV--ENIPGLSKRSISSINK----FTSLINGFTRTKDKV-----SV 477
Query: 757 ANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQ 816
+N++ + +LE + K L + N++ + + + ++ + +S AA E N +
Sbjct: 478 SNLIQE--ILESTGYM-----KELKDSNEIEDISR--IENIKELVS----AAVEFENTSE 524
Query: 817 DKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANET 875
DK L AF++ I+ + +++ ++ ++ + T+H +KGLE+ +VF+
Sbjct: 525 DKS-----LSAFLEKITLVSDVDNY----DEDTDTTVMMTLHSAKGLEFPVVFMVGMENG 575
Query: 876 EIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QP 928
P E +EE RRL YV +TRA+++L+ M A+ + +
Sbjct: 576 IFPGAQSL-----ENFAEMEESRRLCYVGITRAKEQLY----MTSASTRKVFGRSVAYSE 626
Query: 929 SRFLKEIPHHLREVQAE 945
S F+ EI +L+E+ E
Sbjct: 627 SDFINEISPNLKEMVRE 643
>gi|417989276|ref|ZP_12629786.1| ATP-dependent DNA helicase [Lactobacillus casei A2-362]
gi|410538879|gb|EKQ13423.1| ATP-dependent DNA helicase [Lactobacillus casei A2-362]
Length = 751
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 211/724 (29%), Positives = 328/724 (45%), Gaps = 108/724 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ +ND+Q EA P+LI+AG GSGK ++P NILA+TFT
Sbjct: 7 LKGMNDKQSEAVLA-TEGPVLIMAGAGSGKTRVLTHRIAYLVEEKHVNPWNILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+G +V A+++ +STFH+ +++ R +KL F I +Q
Sbjct: 66 AAREMRERVGKLVDAEIARDIWVSTFHALCVRILRRDIDKLGYNRAFTIADPAEQ----- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER- 408
+ +VK I D F ++ + S K E
Sbjct: 121 ----------LTLVKHILAD---------------FNLDPKRYDPKSILGAISSAKNELV 155
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D A +P F K+ A + Y LRS ALD+ DLI ++ L E
Sbjct: 156 DPQTYANEQANSP--FTKVV----AQVYAEYQKRLRSDQALDFDDLIMQTIVLFEKDKET 209
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDS 527
YQ ++ I VDE+QDT+ QY L+ +LA ++ + +VGD DQSI+ + GA++
Sbjct: 210 LAFYQRKFRYIHVDEYQDTNEAQYQLVHMLAEGYHNLCVVGDADQSIYGWRGANMQNILD 269
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F+KD+ + I L +NYRST+ I+ AA+ +IQ+N R Q K + T+N G KI +
Sbjct: 270 FKKDYPKAQVILLEQNYRSTKTILSAANDVIQNNQNR-QAKTLWTENREGDKITYYRAQS 328
Query: 588 EDAQCAFIIDKI-LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
E + F+I +I E A N YG AILYR + + AF + IP+ + G
Sbjct: 329 ETDEAIFVIRRIEAEIADNH----RKYGDFAILYRTNAQSRAIEEAFVKSNIPYKMVGGH 384
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIR 701
FY +K +R +A R + DD + R+ E K+ + ++ ++ +
Sbjct: 385 KFYDRKEIRDALAYFRLVVNPEDDMSFNRIV-------NEPKRGIGNTSVEKLEAFANEH 437
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
S + AA + + I+G R QL + K MI +L R ++ A +
Sbjct: 438 DWSLLEAAANAELSPIAGK-ARGQLAKFGK------MIQQLGTRRKDLNVTEMMQAILED 490
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
YL RA + + + +L SV Q F + + N D D
Sbjct: 491 SGYLSTLRAAHNLEADTRIENLEELLSVTQ------------GFDSRYQPENEDSD---- 534
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
F+D+++E + ++ VTL T+H +KGLE+ +VF+ E PL
Sbjct: 535 -----IFVDFLAELALLSDQDDVEEDAQEVTLMTLHAAKGLEFPVVFLVGMEEGLFPLSR 589
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHH 938
+ + +EEERRL YV +TRA++KL++ M+ Q SRF++EI
Sbjct: 590 -----ASMDESELEEERRLAYVGITRAKQKLYVSNAYGRMLYGQRQNNPASRFIEEINPD 644
Query: 939 LREV 942
L EV
Sbjct: 645 LLEV 648
>gi|331266303|ref|YP_004325933.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis Uo5]
gi|326682975|emb|CBZ00592.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis Uo5]
Length = 763
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 212/729 (29%), Positives = 337/729 (46%), Gaps = 115/729 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R + ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYGL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +II ++E
Sbjct: 266 EKDYPNAKVVLLEENYRSTKTILQAANDVIKNNQNR-RPKNLWTQNADGEQIIYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+ I E G + + A+LYR + + A + IP+ + G F
Sbjct: 325 QDEAIFVAKTIDEL---GRSQNFLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRK 702
Y +K +R IIA L D+ + R+ E KR ++ I + ++
Sbjct: 382 YSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANMQD 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ +I + I G +S +L E + +L +I+ ++ +V
Sbjct: 434 MSMLDASANIMLSGIKGKAAQSIWEFANMILDFREQLDQL-----TITELVEAV------ 482
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
LE+ VD +LN L S + + ++ +FLS T ++ Q+++ +
Sbjct: 483 ---LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSV--TKNFDDNPDSQEEETGL 530
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 531 DKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFIIGMEENVFPLSR- 586
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+ EI
Sbjct: 587 ----AAEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFINEI 638
Query: 936 PHHLREVQA 944
L + Q
Sbjct: 639 SSDLLDYQG 647
>gi|418004773|ref|ZP_12644783.1| ATP-dependent DNA helicase [Lactobacillus casei UW1]
gi|418007676|ref|ZP_12647553.1| ATP-dependent DNA helicase [Lactobacillus casei UW4]
gi|410548392|gb|EKQ22594.1| ATP-dependent DNA helicase [Lactobacillus casei UW4]
gi|410548704|gb|EKQ22893.1| ATP-dependent DNA helicase [Lactobacillus casei UW1]
Length = 751
Score = 228 bits (581), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 212/724 (29%), Positives = 328/724 (45%), Gaps = 108/724 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ +ND+Q EA P+LI+AG GSGK ++P NILA+TFT
Sbjct: 7 LKGMNDKQSEAVLA-TEGPVLIMAGAGSGKTRVLTHRIAYLVEEKHVNPWNILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+G +V A+++ +STFH+ +++ R +KL F I +Q
Sbjct: 66 AAREMRERVGKLVDAEIARDIWVSTFHALCVRILRRDIDKLGYNRAFTIADPAEQ----- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER- 408
+ +VK I D F ++ + S K E
Sbjct: 121 ----------LTLVKHILAD---------------FNLDPKRYDPKSILGAISSAKNELV 155
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D A +P F K+ A + Y LRS ALD+ DLI ++ L E
Sbjct: 156 DPQTYANEQANSP--FTKVV----AQVYAEYQKRLRSDQALDFDDLIMQTIVLFEKDKET 209
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDS 527
YQ ++ I VDE+QDT+ QY L+ +LA ++ + +VGD DQSI+ + GA++
Sbjct: 210 LAFYQRKFRYIHVDEYQDTNEAQYQLVHMLAEGYHNLCVVGDADQSIYGWRGANMQNILD 269
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F+KD+ + I L +NYRST+ I+ AA+ +IQ+N R Q K + T+N G KI +
Sbjct: 270 FKKDYPKAQVILLEQNYRSTKTILSAANDVIQNNQNR-QAKTLWTENREGDKITYYRAQS 328
Query: 588 EDAQCAFIIDKI-LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
E + F+I +I E A N YG AILYR + + AF + IP+ I G
Sbjct: 329 ETDEAIFVIRRIEAEIADNH----RKYGDFAILYRTNAQSRAIEEAFVKSNIPYKMIGGH 384
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIR 701
FY +K +R +A R + DD + R+ E K+ + ++ ++ +
Sbjct: 385 KFYDRKEIRDALAYFRLVVNPEDDMSFNRIV-------NEPKRGIGNTSVEKLEAFANEH 437
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
S + AA + + I+G R QL + K MI +L R ++ A +
Sbjct: 438 DWSLLEAAANAELSPIAGK-ARGQLAKFGK------MIQQLGTRRKDLNVTEMMQAILED 490
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
YL RA + + + +L SV Q F + + N D D
Sbjct: 491 SGYLSTLRAAHNLEADTRIENLEELLSVTQ------------GFDSRYQPENEDSD---- 534
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
F+D+++E + ++ VTL T+H +KGLE+ +VF+ E PL
Sbjct: 535 -----IFVDFLAELALLSDQDDVEEDAQEVTLMTLHAAKGLEFPVVFLVGMEEGLFPLSR 589
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHH 938
+ + +EEERRL YV +TRA++KL++ M+ Q SRF++EI
Sbjct: 590 -----ASMDESELEEERRLAYVGITRAKQKLYLSNAYGRMLYGQRQNNPASRFIEEINPD 644
Query: 939 LREV 942
L EV
Sbjct: 645 LLEV 648
>gi|408355810|ref|YP_006844341.1| ATP-dependent DNA helicase PcrA [Amphibacillus xylanus NBRC 15112]
gi|407726581|dbj|BAM46579.1| ATP-dependent DNA helicase PcrA [Amphibacillus xylanus NBRC 15112]
Length = 746
Score = 228 bits (581), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 200/728 (27%), Positives = 337/728 (46%), Gaps = 126/728 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LN++Q EA PLL++AG GSGK +SP NILA+TFT
Sbjct: 10 LKGLNNRQQEA-VRHTDGPLLVMAGAGSGKTRVLTHRIAYLLDEKDVSPRNILAITFTNK 68
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+DR+ +++G A ++ +STFHS +++ R A+K+ F I+ Q I
Sbjct: 69 AAREMKDRVTNLIG-PEADQMWVSTFHSMCVRILRRDADKIGINRNFTIFDTADQLTVIK 127
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++ E+ + K+ Y S
Sbjct: 128 NVLK----ERNIDPKK-------------YQPRSFLA----------------------- 147
Query: 410 GMDVAKASGKTPAEFRKI-GD---EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
G+ AK +TP +++K+ GD ++ A + ++Y L +++D+ DLI + L
Sbjct: 148 GISSAKNKLQTPDQYQKVAGDYFHKMVADVYQDYQTTLLRNHSMDFDDLIMQTALLFKRA 207
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISG 524
PEV + YQ ++ I VDE+QDT+ QY L++ LA + + +VGD DQSI+ + GADI
Sbjct: 208 PEVLEYYQRRFQYIHVDEYQDTNYAQYDLVKKLAEKYQNLCVVGDSDQSIYRWRGADIKN 267
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF KD+ N + L +NYRST I+ AA+++I++N + K + TD + GSK+ +
Sbjct: 268 ILSFEKDYPNATVVFLEQNYRSTESILNAANAVIKNNPDHKE-KKLWTDQAGGSKLKYYK 326
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + ++ ++I ++ +Y IAILYR +V + F + IP+ +
Sbjct: 327 AQTERYESLYVAEQIEKYIHE---QRFNYRDIAILYRTNAQSRVIEETFVKANIPYQMVG 383
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKIS 698
G FY +K ++ I+A LR DD + R+ E KR I+ + +
Sbjct: 384 GTKFYDRKEIKDILAYLRLISNPDDDVSFVRIVN--------EPKRGIGATTIEKLQNYA 435
Query: 699 TIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISA--VITSV 756
T + S +A +I + +S G EM+S ++++ ++A ++ V
Sbjct: 436 TANEISLFTAIKEIDFVGLGARATKSLAEFG-------EMVSNWIQQQEFLTATDMVEQV 488
Query: 757 ANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQ 816
+ +LE + + L N+ +SV ++ E+ + DQ
Sbjct: 489 LKKSGYEEMLENERTI--EAKTRLENINEFKSVTKHF----------------EKNSDDQ 530
Query: 817 DKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
L AF+ ++ +N VT+ T+H +KGLE+ +VF+ E
Sbjct: 531 -------TLLAFLTDLALISDIDSMDDDPFADNKVTMMTLHAAKGLEFPVVFLVGMEEGI 583
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMM-----DANWQLLQPSRF 931
P H + +E+ + EERRL YV +TRA K+L + + + + W + SRF
Sbjct: 584 FP--HSRSAMDDEE---MAEERRLAYVGITRAEKELHLTHAVTRTLYGETKWNNM--SRF 636
Query: 932 LKEIPHHL 939
++EIP L
Sbjct: 637 IREIPEEL 644
>gi|170758795|ref|YP_001788588.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A3 str. Loch
Maree]
gi|169405784|gb|ACA54195.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A3 str. Loch
Maree]
Length = 738
Score = 228 bits (581), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 204/704 (28%), Positives = 340/704 (48%), Gaps = 138/704 (19%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EAA + PLLI+AG GSGK I PS ILA+TFT AA
Sbjct: 7 LNKEQYEAAIT-IDGPLLILAGAGSGKTRVLTYRIAHMIENLNIYPSKILAITFTNKAAG 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++RI ++VG + + +STFHS +++ R +KL F IY Q+ + + +
Sbjct: 66 EMKERIKALVGDV-VEGMWVSTFHSSCVRILRREIDKLGYDKNFTIYDTYDQKTLVKQCM 124
Query: 353 RLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
L N+K + + I + T G+ ++D +
Sbjct: 125 EELNINDKEITDREI----INTIGN------------------------------QKDNL 150
Query: 412 DVAKASGKTPAEFRKIG------DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+P EF+KI D I A + Y L++ NALD+ DLI +V+L T
Sbjct: 151 -------ISPKEFKKISNGNYRKDRIADAYIL-YQKKLKTNNALDFDDLIYKTVELFKTN 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISG 524
+V + YQ +K I+VDE+QDT+ QY L+++LA H + +VGDDDQ I+ + GADIS
Sbjct: 203 KDVLEFYQRKFKYIMVDEYQDTNKSQYELVKLLALVHRNMCVVGDDDQCIYEWRGADISN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+F KD+ K I+L +NYRS I+ AA+ +I++N +R K ++T+N +G+KI +
Sbjct: 263 ILNFEKDYKEAKVIKLEQNYRSKGNILNAANEVIKNNSQRKN-KVLRTENENGNKIKVFR 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
+++ + F+ +I + + S+ A+LYR ++F+ F +R IP+ I
Sbjct: 322 AYSDIDEAKFVASEIKKIIKDNEK---SFNDFAVLYRTNAQSRIFEDVFMKRDIPYRLIG 378
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
G+ FY +K ++ ++A L+ DD RR+ KR I +T++K
Sbjct: 379 GLKFYDRKEIKDLMAYLKLINNPLDDISLRRIINV--------PKRSIGD----ATVKKV 426
Query: 704 SFISAACD------IFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRR--EPSISAVITS 755
+ D + A T + +T +K + +++ +R+ E S+SA+I
Sbjct: 427 QEFANEMDECMYSVLLDADQILTLSQRSITSIKKF---VSIMNSFIRKKDEISVSALI-- 481
Query: 756 VANMVPQKYLLEQRAVVDFDGGKLLNEDN--DLRSV--LQYLLADVTDFLSTKFTAAKEE 811
K +LE+ + +L N N D+ V L+ L++ DF E
Sbjct: 482 -------KEILEETGYL----KELKNSKNPDDVSRVENLKELVSAAADF---------ER 521
Query: 812 GNVDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVA 870
+ D+ L AF++ ++ + +++ +N +SV + T+H +KGLE+ +VF+
Sbjct: 522 ESEDKS-------LGAFLEKVALVTDIDNY----DENSDSVAMMTVHSAKGLEFPVVFMV 570
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI 914
P + +EE RRL YVA+TRA+++L+I
Sbjct: 571 GMENGIFPGTQSLSDP-----KEMEESRRLCYVAITRAKEQLYI 609
>gi|191637996|ref|YP_001987162.1| ATP-dependent DNA helicase [Lactobacillus casei BL23]
gi|385819745|ref|YP_005856132.1| ATP-dependent DNA helicase PcrA [Lactobacillus casei LC2W]
gi|385822889|ref|YP_005859231.1| ATP-dependent DNA helicase PcrA [Lactobacillus casei BD-II]
gi|409996857|ref|YP_006751258.1| ATP-dependent DNA helicase pcrA [Lactobacillus casei W56]
gi|190712298|emb|CAQ66304.1| ATP-dependent DNA helicase [Lactobacillus casei BL23]
gi|327382072|gb|AEA53548.1| ATP-dependent DNA helicase PcrA [Lactobacillus casei LC2W]
gi|327385216|gb|AEA56690.1| ATP-dependent DNA helicase PcrA [Lactobacillus casei BD-II]
gi|406357869|emb|CCK22139.1| ATP-dependent DNA helicase pcrA [Lactobacillus casei W56]
Length = 751
Score = 228 bits (581), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 211/724 (29%), Positives = 329/724 (45%), Gaps = 108/724 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ +ND+Q EA P+LI+AG GSGK ++P NILA+TFT
Sbjct: 7 LKGMNDKQSEAVLA-TEGPVLIMAGAGSGKTRVLTHRIAYLVEEKHVNPWNILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+G +V A+++ +STFH+ +++ R +KL F I +Q
Sbjct: 66 AAREMRERVGKLVDAEIARDIWVSTFHALCVRILRRDIDKLGYNRAFTIADPAEQ----- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER- 408
+ +VK I D F ++ + S K E
Sbjct: 121 ----------LTLVKHILAD---------------FNLDPKRYDPKSILGAISSAKNELV 155
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D A +P F K+ A + Y LRS ALD+ DLI ++ L E
Sbjct: 156 DPQTYANEQANSP--FTKVV----AQVYAEYQKRLRSDQALDFDDLIMQTIVLFEKDKET 209
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDS 527
YQ ++ I VDE+QDT+ QY L+ +LA ++ + +VGD DQSI+ + GA++
Sbjct: 210 LAFYQRKFRYIHVDEYQDTNEAQYQLVHMLAEGYHNLCVVGDADQSIYGWRGANMQNILD 269
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F+KD+ + I L +NYRST+ I+ AA+++IQ+N R Q K + T+N G KI +
Sbjct: 270 FKKDYPKAQVILLEQNYRSTKTILSAANNVIQNNQNR-QAKTLWTENREGDKITYYRAQS 328
Query: 588 EDAQCAFIIDKI-LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
E + F+I +I E A N YG AILYR + + AF + IP+ + G
Sbjct: 329 ETDEAIFVIRRIEAEIADNH----RKYGDFAILYRTNAQSRAIEEAFVKSNIPYKMVGGH 384
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIR 701
FY +K +R +A R + DD + R+ E K+ + ++ ++ +
Sbjct: 385 KFYDRKEIRDALAYFRLVVNPEDDMSFNRIV-------NEPKRGIGNTSVEKLEAFANEH 437
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
S + AA + + I+G R QL + K MI +L R ++ A +
Sbjct: 438 DWSLLEAAANAELSPIAGK-ARGQLAKFGK------MIQQLGTRRKDLNVTEMMQAILED 490
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
YL RA + + + +L SV Q F + + N D D
Sbjct: 491 SGYLSTLRAAHNLEADTRIENLEELLSVTQ------------GFDSRYQPENEDSD---- 534
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
F+D+++E + ++ VTL T+H +KGLE+ +VF+ E PL
Sbjct: 535 -----IFVDFLAELALLSDQDDVEEDAQEVTLMTLHAAKGLEFPVVFLVGMEEGLFPLSR 589
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHH 938
+ + +EEERRL YV +TRA++KL++ M+ Q SRF++EI
Sbjct: 590 -----ASMDESELEEERRLAYVGITRAKQKLYLSNAYGRMLYGQRQNNPASRFIEEINPD 644
Query: 939 LREV 942
L EV
Sbjct: 645 LLEV 648
>gi|339320990|ref|YP_004683512.1| ATP-dependent helicase [Mycoplasma bovis Hubei-1]
gi|392430074|ref|YP_006471119.1| ATP-dependent DNA helicase [Mycoplasma bovis HB0801]
gi|338227115|gb|AEI90177.1| ATP-dependent helicase [Mycoplasma bovis Hubei-1]
gi|392051483|gb|AFM51858.1| ATP-dependent DNA helicase [Mycoplasma bovis HB0801]
Length = 734
Score = 228 bits (581), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 215/736 (29%), Positives = 346/736 (47%), Gaps = 139/736 (18%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTF 286
+K + LN++Q EA PL I+AG GSGK GISP++ILA+TF
Sbjct: 12 AKIFEGLNEEQTEALYY-FDGPLRIIAGAGSGKTRVLTRKIAYLINVLGISPNHILAVTF 70
Query: 287 TTAAASEMRDRI----GSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHG 342
T AA+EM +R+ + K TA+ ISTFHS ++ R A + ++F I
Sbjct: 71 TNKAAAEMSERVKQYTNTKFNKGTAE---ISTFHSLCARILREEAFHINLKNDFQIIDDN 127
Query: 343 QQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQ 402
+++ + + + D++ TD +F N + FS KL
Sbjct: 128 DKKKILKDLYK-------------EHDLIPTDSNFK---------NLIRLFSWLKNKL-- 163
Query: 403 YNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLL 462
++ D + + +EF G+ + I YN LR+ +LD+ DL+ +L
Sbjct: 164 ---YDSDEEIIHFINSNLESEFYGDGESV-VKIYNLYNNQLRTLQSLDFDDLLIKVNELF 219
Query: 463 STFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-RITIVGDDDQSIFSFNGAD 521
PE+ +++ + I+VDEFQDTSA+QY +++ L+S ++TIVGD DQ+I+ + GAD
Sbjct: 220 YKNPEIVKKWALKYSYILVDEFQDTSAIQYEIIKYLSSQKAQLTIVGDPDQTIYRWRGAD 279
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII 581
++ SF KDF N K I L++NYRST+ I+EAA++LI++N R KN+ TDN G++I
Sbjct: 280 VNLILSFEKDFENTKTIILSKNYRSTKKILEAANNLIKYNHNRFN-KNLVTDNYDGAEIE 338
Query: 582 IKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN 641
+ +A+ +++ KI ++ +IAI YR + F+ KI +
Sbjct: 339 YIHAFSPEAEVRWVVQKI----NDLKKQKIQLKNIAIFYRSNSYSRNFEEQLMNEKINYK 394
Query: 642 IH-GVAFYRKKVVRAIIAMLRTTLPGCD-------DGPYRRVFKAFL---LLEKEEK--- 687
I G FY++K ++ +A LR G D + P R+V +A L + EK
Sbjct: 395 IFGGEKFYQRKEIKDALAFLRVIYDGNDLQLKRIINVPPRKVGEASLNKIINFANEKNLS 454
Query: 688 --KRVIDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRR 745
K ++ H + ++ +I+ ++ L QG K+ + LE K +
Sbjct: 455 LYKTLVTHYKNLPVSKEV-----IINIYALLNCINKYKAALLQGNKIHVVLESFLKEIGF 509
Query: 746 EPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKF 805
IS + G K E+N +R++L+ +
Sbjct: 510 LKYISEDV----------------------GLKGTGEEN-IRALLEGI------------ 534
Query: 806 TAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWD 865
+ + KKG LK + +YIS ++ + V+L T+H +KGLE+D
Sbjct: 535 ----KSWEITNPKKG----LKEYFEYISLISAS---DSTDESMSYVSLMTVHAAKGLEFD 583
Query: 866 IVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQL 925
VF+ E P N + ++EEERRL YVA+TRA++KLF+ D+ L
Sbjct: 584 NVFLVGMCENIFP-----NYRAYKVPEAMEEERRLAYVAITRAKEKLFV----SDSRGLL 634
Query: 926 L------QPSRFLKEI 935
L +PSRFLKE+
Sbjct: 635 LYSQTEKKPSRFLKEM 650
>gi|322387882|ref|ZP_08061489.1| ATP-dependent DNA helicase PcrA [Streptococcus infantis ATCC
700779]
gi|419843921|ref|ZP_14367226.1| ATP-dependent DNA helicase PcrA [Streptococcus infantis ATCC
700779]
gi|321141155|gb|EFX36653.1| ATP-dependent DNA helicase PcrA [Streptococcus infantis ATCC
700779]
gi|385702345|gb|EIG39490.1| ATP-dependent DNA helicase PcrA [Streptococcus infantis ATCC
700779]
Length = 762
Score = 228 bits (581), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 211/729 (28%), Positives = 337/729 (46%), Gaps = 115/729 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R + ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYGL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIIDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R+ L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERSILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + I A + Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDLYTNIVAKCYDAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +II ++E
Sbjct: 266 EKDYPQAKVVLLEENYRSTKTILQAANDVIKNNKNR-RPKNLWTQNADGEQIIYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+ I E N + A+LYR + + A + IP+ + G F
Sbjct: 325 QDEAVFVAKTIDELGRN---QNFLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRK 702
Y +K +R IIA L D+ + R+ E KR ++ I + +++
Sbjct: 382 YSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANLQE 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ +I + I G +S +L E + +L +I+ ++ +V
Sbjct: 434 MSMLDASANIMLSGIKGKAAQSIWDFANMILDLREQLDQL-----TITELVEAV------ 482
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
LE+ VD +LN L S + + ++ +FLS T ++ Q+++ +
Sbjct: 483 ---LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSV--TKNFDDNPDSQEEETGL 530
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 531 DKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFIIGMEENVFPLSR- 586
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
+E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+ EI
Sbjct: 587 ----ASEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGKTNYNRPTRFINEI 638
Query: 936 PHHLREVQA 944
L Q
Sbjct: 639 SSDLLTYQG 647
>gi|291456654|ref|ZP_06596044.1| ATP-dependent DNA helicase PcrA [Bifidobacterium breve DSM 20213 =
JCM 1192]
gi|291381931|gb|EFE89449.1| ATP-dependent DNA helicase PcrA [Bifidobacterium breve DSM 20213 =
JCM 1192]
Length = 901
Score = 228 bits (581), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 207/732 (28%), Positives = 323/732 (44%), Gaps = 105/732 (14%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN QQ EA LLI AG GSGK G PS ILA+TFT AA
Sbjct: 29 LNPQQAEA-VQYRGQALLIGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTNKAAV 87
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EMR+R+GS++G A+ + +STFHS +++ R + + S F IY R V
Sbjct: 88 EMRERLGSLIGP-VAQRMWVSTFHSACVRILRRDGKSIGLKSGFSIYDSADSERL----V 142
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+++ E L +KR + + GH ++ +L L F
Sbjct: 143 KIIATEFNLDIKRYTPRSIL--GHISDLKNNLTGWKENLAVHAPDF-------------- 186
Query: 413 VAKASGKTPAEFRKIGD--EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
G+ +F +GD I A I Y L NA+D+ DLI +V+LL T P V +
Sbjct: 187 ---TPGQRGYQFGTVGDLEAIYAVIYAEYEHRLALANAVDFDDLIGRTVELLRTDPAVAE 243
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR------------------ITIVGDDDQ 512
Y ++ I+VDE+QDT+ QY L++ LA + IT+VGD DQ
Sbjct: 244 YYHHRFRYILVDEYQDTNHAQYVLVRELAGVDTGEKAIPGSPNAGKSGPAWITVVGDSDQ 303
Query: 513 SIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQT 572
SI++F GADI F +DF N K I L +NYRST+ I++AA+++I +N R + K + T
Sbjct: 304 SIYAFRGADIRNIQDFEQDFPNAKTIMLEQNYRSTQTILDAANAVISNNEGR-KPKKLWT 362
Query: 573 DNSHGSKIIIKECHNEDAQCAFIIDKILE-HASNGPASICSYGSIAILYRRQVSGKVFQT 631
G I+ N + ++ +I HA +Y +AI+YR + +
Sbjct: 363 ALGKGEPIVGYAADNAQQEAQWVATEIARLHAEED----IAYSDMAIMYRANAQSRSLEE 418
Query: 632 AFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV 690
A +P+ + G FY ++ ++ +A L+ + DD RR+ + ++ R
Sbjct: 419 ALINAGLPYQLVGGTKFYERREIKDALAYLQALVNPDDDVNLRRILN---VPKRGLGNRA 475
Query: 691 IDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSIS 750
+ + R SF A + + T +QL R ++ L ++ +P S
Sbjct: 476 EGILLAYARERGTSFFYALMHLDEIQDVPTRTATQLKAFRDLMGELSQFTRAHDAKP--S 533
Query: 751 AVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKE 810
++ V + LE+ VD L + L+S TAA+
Sbjct: 534 EIVAEVLEKSGLRAELEKS--VDPQDASRLENLSQLQS-----------------TAAEF 574
Query: 811 EGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVA 870
E N L AF++ + ++ VTL T+H +KGLE+ +VF+
Sbjct: 575 EQNTPD------ATLSAFLETTALVADSDQLPGEAEDSGKVTLMTLHTAKGLEYPVVFLT 628
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQL---LQ 927
+ P E T ++EERRL YV +TRA+++L++ + + W +
Sbjct: 629 GMEQGTFPHSRSM-----EDTTELQEERRLAYVGITRAKQRLYVTRAAVRSQWGQAADMM 683
Query: 928 PSRFLKEIPHHL 939
PS+FL EIP L
Sbjct: 684 PSQFLDEIPDSL 695
>gi|423687255|ref|ZP_17662063.1| ATP-dependent DNA helicase Rep [Vibrio fischeri SR5]
gi|371493654|gb|EHN69255.1| ATP-dependent DNA helicase Rep [Vibrio fischeri SR5]
Length = 671
Score = 228 bits (581), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 204/734 (27%), Positives = 351/734 (47%), Gaps = 97/734 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN QQ EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPQQDEA-VKFVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G +GK ++ L +STFHS L + R + L + F ++
Sbjct: 62 EMKERVGQTLGKQESRGLMVSTFHSLGLDIIRREYKVLGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ + DG +R L S+S++K D +
Sbjct: 110 ---DQDQLALLKELTEKQI--DGDKDLLR--------QLLSSISNWK--------NDMLT 148
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
A+ G +E D++ A E Y +++ NALD+ DLIS V LL T EV + +
Sbjct: 149 PAQVKGFARSE----QDQLFAFCYEMYLNQMKAYNALDFDDLISLPVLLLRTNQEVRERW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q + ++VDE+QDT+ QY L+++L R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QMKIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLNED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
+ N + I+L +NYRST I+ AA+ LI +N + K + ++ G +I I +++ +
Sbjct: 265 YPNLRVIKLEQNYRSTSRILRAANILIANNPHAFE-KRLFSEIPDGEQIKILTAKDDEHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
++ +++ H + Y A+LYR ++ + + + ++P+ I G +F+ +
Sbjct: 324 AERVVGELIAHRF---LNRTDYKDYAVLYRGNHQSRLIEKSLMQNRVPYKISGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR DD + RV +E ++ + + +R S ++
Sbjct: 381 AEIKDIMAYLRLLTNPDDDNAFLRVVNT---PRREIGPVTLEKLGSYANMRGKSLFESSF 437
Query: 711 DIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRA 770
+I + T L R+ + IS+ R ++ AV + V ++ + +L E
Sbjct: 438 EI---GLEQTLSGRGLESLRRFCHWIVSISENAERGNTVEAVRSLVKDIHYEDWLYETST 494
Query: 771 VVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAFI 829
+ + +V+D S + A EG N D ++K LK +
Sbjct: 495 SA---------------KAAEMRMKNVSDLYS--WIVADLEGDNYDNEEK----TLKEVV 533
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
++ R+ R + D + V L T+H SKGLE+ V++ A E +P H+ +++E
Sbjct: 534 QKLTLRDMME-RGEDEDGADQVQLMTLHASKGLEFPYVYLIGAEEGILP--HQ--TSIDE 588
Query: 890 KGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLL--QPSRFLKEIPHHLREVQAEQ 946
+VEEERRL YV +TRA+K+L F L +L+ +PSRFL+E+PH + + ++
Sbjct: 589 D--NVEEERRLAYVGITRAQKELTFTLCKERRQYGELIRPEPSRFLEELPHDDLDWEMKK 646
Query: 947 SVQDQHENIPEGTA 960
Q E + G A
Sbjct: 647 PKPTQEERMERGKA 660
>gi|227515526|ref|ZP_03945575.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum ATCC
14931]
gi|227086139|gb|EEI21451.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum ATCC
14931]
Length = 760
Score = 228 bits (581), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 203/738 (27%), Positives = 337/738 (45%), Gaps = 119/738 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ +ND+Q EA PLL++AG GSGK + P +ILA+TFT
Sbjct: 11 LEGMNDKQSEAVL-TTEGPLLVMAGAGSGKTRVLTHRIAYLIEERHVLPWHILAITFTNK 69
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ ++G+A ++ +STFH+ +++ R E+L F I +QR I
Sbjct: 70 AAREMKERVAKLLGEA-GNDVWVSTFHALCVRILRRDIEQLGYNRAFTIADTSEQRTLI- 127
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+ E + I K +L+
Sbjct: 128 --KRICEEQNIDTKKFEPRQLLS------------------------------------- 148
Query: 410 GMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+ AK + + PA F K D + A + E Y L LD+ DLI +++L
Sbjct: 149 AISNAKNAMEDPATFAKNHQRPFDRMVARVYEAYQKELERNQTLDFDDLIMKTIELFKKA 208
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISG 524
PE YQD + I VDE+QDT+ QY L+ +LA + I +VGD DQSI+ + GA+++
Sbjct: 209 PETLTYYQDKFHYIHVDEYQDTNDAQYELVHMLAEKYENICVVGDADQSIYGWRGANMNN 268
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+F D+ N + L +NYRST+ I++AA+ +I +N++R KN+ T+N G KI
Sbjct: 269 ILNFEHDYPNAHSVMLEQNYRSTQTILKAANEVIANNLERKD-KNLWTENGAGEKISYYR 327
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
NE + FI+ KI E + Y AILYR +V + F + +P+ +
Sbjct: 328 AQNEHDEAQFIVKKIQEERAKHN---YQYQDFAILYRTNAQSRVIEETFLKSTVPYTMVG 384
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI-----DHIDKIS 698
G FY + +R ++A L + D + RV KR I + + + +
Sbjct: 385 GHRFYDRMEIRDLLAYLTLIVNPLDSMSFERVVNT--------PKRGIGMTSVERLREFA 436
Query: 699 TIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
++AA ++ A R+++ + +++ L+ +K++ IT + +
Sbjct: 437 QESNLPLLAAAQNVQNANAISARTRNKIEEFGQLIAALQDEAKVLS--------ITDLTD 488
Query: 759 MVPQK--YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQ 816
V ++ YL E L +D L+ Q ++ +F S E +
Sbjct: 489 QVLERTGYLAE------------LQKDKTLQG--QTRRENLEEFKSV----TAEYDRQHE 530
Query: 817 DKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
D +G ++ L+ D+++ + + E +VTL T+H +KGLE+ ++F+ E
Sbjct: 531 DDEG-MDHLQKLTDFLAGLALVSDQDDVDEAEPAVTLMTLHAAKGLEFPVIFLIGMEEGV 589
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLK 933
PL +EEERRL YV +TRA+KKL+I M+ + Q +PS F++
Sbjct: 590 FPLSRAMT-----DNKELEEERRLAYVGITRAKKKLYITNAFSRMLYGHIQRNRPSEFVE 644
Query: 934 EIPHHLREVQAEQSVQDQ 951
EI L +Q+E Q +
Sbjct: 645 EITPEL--MQSENQNQGE 660
>gi|337281744|ref|YP_004621215.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis ATCC
15912]
gi|335369337|gb|AEH55287.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis ATCC
15912]
Length = 767
Score = 228 bits (581), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 211/739 (28%), Positives = 338/739 (45%), Gaps = 117/739 (15%)
Query: 236 NMPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSN 280
N +E + L +ND+Q EA PLLI+AG GSGK ++P N
Sbjct: 2 NGENEMNPLLNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWN 60
Query: 281 ILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYG 340
ILA+TFT AA EM++R + ++ I+TFHS +++ R A+ + F I
Sbjct: 61 ILAITFTNKAAREMKERAYQL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVD 118
Query: 341 HGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKL 400
G+QR + R+L++ + K +L T + NA
Sbjct: 119 PGEQRTLM---KRILKSLNLDPKKWNERTILGT------------ISNA----------- 152
Query: 401 CQYNKFERDGMD-VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSV 459
+ D +D VA A A+ I +I A E Y LR A+D+ DLI ++
Sbjct: 153 ------KNDLIDEVAYA-----AQAGDIYTQIVAKCYEAYQKELRQSEAVDFDDLIMLTL 201
Query: 460 KLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFN 518
+L P+V YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ +
Sbjct: 202 RLFDQHPDVLTYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWR 261
Query: 519 GADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGS 578
GAD+ F KD+ + K + L NYRST+ I++AA+ +I++N R + KN+ T N G
Sbjct: 262 GADMQNILDFEKDYPDAKVVLLEENYRSTKTILQAANDVIKNNRHR-RPKNLWTQNEDGE 320
Query: 579 KIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKI 638
+I+ ++E + F+ I E + + A+LYR + + A + I
Sbjct: 321 EIVYYRANDEQDEAVFVAKTIEELSREAG---YKHRDFAVLYRTNAQSRTIEEALLKSNI 377
Query: 639 PFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VID 692
P+ + G FY +K +R +IA L D+ + R+ E KR +D
Sbjct: 378 PYTMVGGTKFYSRKEIRDVIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVD 429
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV 752
I + +++ S + A+ +I + I G ++ +L E + +L +I+ +
Sbjct: 430 KIRDFAQMQEASLLDASANIMLSGIKGKAAQAIWDFANLILDLRERLDQL-----TITEL 484
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
+ V + Y++ L N+ N L S Q + ++ +FLS E G
Sbjct: 485 VEEVLDKT--GYMM-----------ALTNQGN-LES--QARIENIQEFLSVT-KNFDENG 527
Query: 813 NVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKA 872
+D+ G + + D +T+ + + VTL T+H +KGLE+ +VF+
Sbjct: 528 ETVEDETGVETLSRFLNDLALIADTDDGAQETSE----VTLMTLHAAKGLEFPVVFLIGM 583
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL------ 926
E PL E +EEERRL YV +TRA K LF + +AN +LL
Sbjct: 584 EENVFPLSR-----AAEDPDELEEERRLAYVGITRAEKVLF----LTNANSRLLFGRTSY 634
Query: 927 -QPSRFLKEIPHHLREVQA 944
+P+RF+ EI L Q
Sbjct: 635 NRPTRFINEISSDLLTYQG 653
>gi|226952361|ref|ZP_03822825.1| ATP-dependent DNA helicase [Acinetobacter sp. ATCC 27244]
gi|294649622|ref|ZP_06727039.1| ATP-dependent DNA helicase [Acinetobacter haemolyticus ATCC 19194]
gi|226836813|gb|EEH69196.1| ATP-dependent DNA helicase [Acinetobacter sp. ATCC 27244]
gi|292824499|gb|EFF83285.1| ATP-dependent DNA helicase [Acinetobacter haemolyticus ATCC 19194]
Length = 679
Score = 228 bits (581), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 208/751 (27%), Positives = 354/751 (47%), Gaps = 116/751 (15%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LND+QLEA + PLL++AG GSGK GI I AMTFT AA
Sbjct: 7 LNDKQLEA-MKYVQGPLLVLAGAGSGKTSVITRKIAFLVQQCGIPAYRITAMTFTNKAAR 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G ++ + AK L++STFH+F L L R + L + F +I++A
Sbjct: 66 EMKERVGKLLSREEAKGLSVSTFHTFGLNLLRLELKNLPLKANF----------SILDAD 115
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
KRI D++ D G L A +S +K + +
Sbjct: 116 D---------CKRILMDLMQRDNMSGAESKELI---AKAMKKISDWK---------NDLI 154
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
+ + + T + D A + + Y LR+ NA+D+ DLI +LL EV ++
Sbjct: 155 LPEQAHST---CETVEDVQLAHLYQLYERNLRAYNAVDFDDLIVMPTRLLQENAEVRDKW 211
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY+L+++L + T VGDDDQSI+++ GA + D
Sbjct: 212 QNRVRYLLVDEYQDTNTAQYTLVKLLVGVMGQFTAVGDDDQSIYAWRGAKPENMALLKDD 271
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F N K I+L +NYRST I++AA+++I++N K + +D HG I + C N+D +
Sbjct: 272 FHNLKVIKLEQNYRSTSRILKAANAVIENNPHIFD-KKLWSDKGHGENIRVITCLNDDDE 330
Query: 592 CAFIIDKILEHA-SNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYR 649
++ ++ H NG ++ AILYR +V +T R+ +IP+ + G +F+
Sbjct: 331 AERVVKDLITHKLMNGK----NWKDYAILYRGNFQARVLETQLRQMQIPYKLSGGQSFFA 386
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI--DKISTIRK---CS 704
+ ++ +++ LR + DD + R+ KR I + +K+ + S
Sbjct: 387 RAEIKDVMSYLRLIINPEDDSAFLRIINT--------PKRAIGPVTLEKLGLFAQENTLS 438
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK- 763
++A+ D ++S + TQ + + I+ R + V M+ +
Sbjct: 439 LLTASSD---QRLSMVLPKKAATQLHEF---ADFIATFTRELLDDDEPVPKVRQMINEAG 492
Query: 764 ---YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
Y+ EQ A + K+ N ++ L + +Q L+ + TD D D+K
Sbjct: 493 YIDYVREQAATPAQEKTKIDNIES-LYTSIQNLI-NRTD---------------DVDEKN 535
Query: 821 CINVLKAFI--DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
+V++ + D + +++ E ++ + V L T+H +KGLE+ V++ E +P
Sbjct: 536 IESVIRKLVLLDMLEQQQEE-------EDTDKVNLLTLHAAKGLEFPYVYMIGLEEELLP 588
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDAN---WQLLQPSRFLKEI 935
H+ N +E ++EEERRL+YV +TRAR+ L + N + + PSRFL E+
Sbjct: 589 --HK-NSIASE---TIEEERRLMYVGITRARQGLTLTLAEQRKNGGQMRQMTPSRFLDEL 642
Query: 936 PHHLREVQAEQSVQDQHENIPEGTAQFTINL 966
P E + + + E Q+ NL
Sbjct: 643 PQDDLEWHGRKKKLAPNVDPKEQAQQYLANL 673
>gi|359405649|ref|ZP_09198396.1| putative ATP-dependent DNA helicase PcrA [Prevotella stercorea DSM
18206]
gi|357557971|gb|EHJ39489.1| putative ATP-dependent DNA helicase PcrA [Prevotella stercorea DSM
18206]
Length = 772
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 225/751 (29%), Positives = 356/751 (47%), Gaps = 117/751 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
L+SLN QL AA P LI+AG GSGK G++P +ILA+TFT A
Sbjct: 5 LKSLNPNQL-AAVEYTDGPELIIAGAGSGKTRVLTYKIAYLLQKGLAPWSILALTFTNKA 63
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIE 350
A EM+ RI +VG+ A+ L + TFHS L++ R+ AE + F IY G R +
Sbjct: 64 AREMKSRIADLVGEERARYLNMGTFHSVFLRILRAEAEAVGLERNFSIYDDGDSRAVVNS 123
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
++ L K+ + ++ +L G G + SL + MS L ERD
Sbjct: 124 IIKEL---KLDDKQYKASSVL---GRIGAAKNSLVTPD----IYMSDPHLA-----ERD- 167
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
K SG K+G I Y ++ NA+D+ D++ + KL + P++ Q
Sbjct: 168 ----KVSG-----MPKVGQ-----IYALYAARCKAANAVDFDDMLLFTYKLFADNPQIAQ 213
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDSFR 529
+Y + + ++VDE+QDT+ Q S+L +L R I +VGDD QSI++F GA+I +F+
Sbjct: 214 KYAERFSYVLVDEYQDTNYAQQSILTLLTKERRNICVVGDDAQSIYAFRGANIDNILTFQ 273
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
+ + +L +NYRST+ IV+AA+S+I +N ++ + K+V ++N G K+ + +++
Sbjct: 274 NIYEGARLFKLEQNYRSTQTIVKAANSVIVNNQRQIR-KDVYSENGDGEKVRLNIAYSDK 332
Query: 590 AQCAFIIDKILE-HASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAF 647
+ + + ++I H G A YG IA+LYR ++F+ FR + P+ I+ G++F
Sbjct: 333 EEASVVCNEIRRLHNRYGVA----YGDIAVLYRTNAQSRLFEEEFRRQDTPYRIYGGMSF 388
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y+ K ++ +IA R D+ +RV KR I +T+ K S
Sbjct: 389 YQHKEIKDVIAYFRLVANPNDEEALKRVINY--------PKRGIGD----TTVSKLIAAS 436
Query: 708 AACDIFGAKISGTFKRSQLTQG------RKVLLTLEMISKLVRREPSISAVITSVANMVP 761
C++ + G S G +KV+ M+ + +R + A + A +
Sbjct: 437 RDCNVSLWNVVGN--PSMYNAGVSAATEKKVVGFYCMMDEFIRDNNTTDAYVLGKA--IL 492
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
+K L+Q D + +DN ++ ++ + DF+ TK +EEG D+
Sbjct: 493 EKSGLKQELAADKSMEGVERQDN-----IEEFMSGLHDFVDTK----REEGYKDE----- 538
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENS--------VTLTTIHQSKGLEWDIVFVAKAN 873
YI+ E D ENS V+L TIH SKGLE++ VFV
Sbjct: 539 --------VYIANFLQEVALLTDSDEENSDDVSSNERVSLMTIHASKGLEFNSVFVVGLE 590
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSR 930
E P + +EEERRLLYVA+TRA ++ F+ + + +PSR
Sbjct: 591 ENIFPSP-----RSSSSLRELEEERRLLYVAITRAEQRCFLSCAKSRYQYGSMMFNEPSR 645
Query: 931 FLKEIPHHLREVQAE----QSVQDQHENIPE 957
FLKEI V+ QS Q+ PE
Sbjct: 646 FLKEIDKQYLIVEGNVGGFQSPAQQYSQRPE 676
>gi|417916144|ref|ZP_12559734.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis bv. 2 str.
SK95]
gi|342831026|gb|EGU65350.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis bv. 2 str.
SK95]
Length = 763
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 212/729 (29%), Positives = 337/729 (46%), Gaps = 115/729 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R + T ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYGL--NPTTQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +II ++E
Sbjct: 266 EKDYPKAKVVLLEENYRSTKTILQAANDVIKNNKNR-RPKNLWTQNADGEQIIYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+ I E G + + A+LYR + + A + IP+ + G F
Sbjct: 325 QDEAVFVAKTIDEL---GRSQNFLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRK 702
Y +K +R IIA L D+ + R+ E KR ++ I + +++
Sbjct: 382 YSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANLQE 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ +I + I G +S +L E + +L +I+ ++ +V
Sbjct: 434 MSMLDASANIMLSGIKGKAAQSIWEFANMILDLREQLDQL-----TITELVEAV------ 482
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
LE+ VD +LN L S + ++ +FLS T ++ Q+++ +
Sbjct: 483 ---LEKTGYVD-----ILNAQATLESKAR--AENIQEFLSV--TKNFDDNPDSQEEETGL 530
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 531 DKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFIIGMEENVFPLSR- 586
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+ EI
Sbjct: 587 ----AAEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTSYNRPTRFINEI 638
Query: 936 PHHLREVQA 944
L + Q
Sbjct: 639 SSDLLDYQG 647
>gi|119475297|ref|ZP_01615650.1| ATP-dependent DNA helicase Rep [marine gamma proteobacterium
HTCC2143]
gi|119451500|gb|EAW32733.1| ATP-dependent DNA helicase Rep [marine gamma proteobacterium
HTCC2143]
Length = 671
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 194/715 (27%), Positives = 337/715 (47%), Gaps = 99/715 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EAA + PLL++AG GSGK GI ++I A+TFT
Sbjct: 1 MNQLNPRQREAAHY-IDGPLLVLAGAGSGKTSVITQKIAYLIEKCGIKGNHIAAVTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +V A+ L +STFH+ L + R + + S F I+ Q +A+I
Sbjct: 60 AAREMKERVSQLVSGPAARGLIVSTFHNLGLNILRKEHKSIGYKSGFSIFDQ-QDAQALI 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ L++++ ++ ++D + +SS+K N
Sbjct: 119 ---------RDLLMQQHGSEDSSSDQADAVQQ------------QISSWKNDMVNP---- 153
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D A A PA + A Y L++ NA D+ DLI V++ FPE+
Sbjct: 154 --DQAVAMATAPAGI------LCAQAYLRYQRALKAYNAFDFDDLIVVPVQIFQQFPEIL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSF 528
++Q ++VDE+QDT+ QY L+++L ++T+VGDDDQSI+++ GA
Sbjct: 206 AKWQRRIHYMLVDEYQDTNISQYLLVKLLIGDRGKLTVVGDDDQSIYAWRGARPENLAQL 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
+ D+ N K ++L +NYRST I++AA+ +I HN + K + ++ +G I + C NE
Sbjct: 266 QNDYPNLKLVKLEQNYRSTARILKAANRVIDHNPHVFE-KALWSELGYGDPIRVIRCRNE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAF 647
+ +C ++ +IL+ G Y A+LYR ++ + F+ ++P+ I G +F
Sbjct: 325 EIECERVVTEILDRRVRGHGQFSDY---AVLYRGNHQSRLLELKFQSHQVPYQISGGTSF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
+ + ++ I+A LR + DD + R+ + ++ ++ + +T R S
Sbjct: 382 FARHEIKDIMAYLRLLINRADDNAFLRIVN---VPRRKIGTSTLESLGNYATERDISLFD 438
Query: 708 AACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLE 767
AC G + + + +T+ R+ L+ IS+ ++A+ V +M Q +L +
Sbjct: 439 -ACSELG--LEQSLSEASVTRLRQFTSWLDRISQRCESGDGMAAIREMVNDMDYQAWLHQ 495
Query: 768 QRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFL-STKFTAAKEEGNVDQDKKGCIN-VL 825
N +D+ V + +A+V + S + T K+E D + VL
Sbjct: 496 -------------NSSSDV--VAERRMANVYTLVDSLQSTIDKDESEEDDIQSAVAKLVL 540
Query: 826 KAFIDYISERETEHFRTQRHDNE-NSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFN 884
+ +D R Q D+ + V L T+H SKGLE+ V++ E +P
Sbjct: 541 RDLLD----------RQQEDDDAMDKVQLMTLHASKGLEFPHVYIIGMEEELLP----HR 586
Query: 885 GAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEIP 936
++ E ++EEERRL YV +TRA++ L + Y + + SRFL E+P
Sbjct: 587 ASIEED--NIEEERRLCYVGITRAKRTLALTYCSKRKQYGEMIDCAASRFLDELP 639
>gi|239631845|ref|ZP_04674876.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|417980259|ref|ZP_12620940.1| ATP-dependent DNA helicase [Lactobacillus casei 12A]
gi|417992600|ref|ZP_12632955.1| ATP-dependent DNA helicase [Lactobacillus casei CRF28]
gi|239526310|gb|EEQ65311.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|410525486|gb|EKQ00388.1| ATP-dependent DNA helicase [Lactobacillus casei 12A]
gi|410533179|gb|EKQ07866.1| ATP-dependent DNA helicase [Lactobacillus casei CRF28]
Length = 751
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 211/724 (29%), Positives = 328/724 (45%), Gaps = 108/724 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ +ND+Q EA P+LI+AG GSGK ++P NILA+TFT
Sbjct: 7 LKGMNDKQSEAVLA-TEGPVLIMAGAGSGKTRVLTHRIAYLVEEKHVNPWNILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+G +V A+++ +STFH+ +++ R +KL F I +Q
Sbjct: 66 AAREMRERVGKLVDAEIARDIWVSTFHALCVRILRRDIDKLGYNRAFTIADPAEQ----- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER- 408
+ +VK I D F ++ + S K E
Sbjct: 121 ----------LTLVKHILAD---------------FNLDPKRYDPKSILGAISSAKNELV 155
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D A +P F K+ A + Y LRS ALD+ DLI ++ L E
Sbjct: 156 DPQTYANEQANSP--FTKVV----AQVYAEYQKRLRSDQALDFDDLIMQTIVLFEKDKET 209
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDS 527
YQ ++ I VDE+QDT+ QY L+ +LA ++ + +VGD DQSI+ + GA++
Sbjct: 210 LAFYQRKFRYIHVDEYQDTNEAQYQLVHMLAEGYHNLCVVGDADQSIYGWRGANMQNILD 269
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F+KD+ + I L +NYRST+ I+ AA+ +IQ+N R Q K + T+N G KI +
Sbjct: 270 FKKDYPKAQVILLEQNYRSTKTILSAANDVIQNNQNR-QAKTLWTENREGDKITYYRAQS 328
Query: 588 EDAQCAFIIDKI-LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
E + F+I +I E A N YG AILYR + + AF + IP+ + G
Sbjct: 329 ETDEAIFVIRRIEAEIADNH----RKYGDFAILYRTNAQSRAIEEAFVKSNIPYKMVGGH 384
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIR 701
FY +K +R +A R + DD + R+ E K+ + ++ ++ +
Sbjct: 385 KFYDRKEIRDALAYFRLVVNPEDDMSFNRIV-------NEPKRGIGNTSVEKLEAFANEH 437
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
S + AA + + I+G R QL + K MI +L R ++ A +
Sbjct: 438 DWSLLEAAANAELSPIAGK-ARGQLAKFGK------MIQQLGTRRKDLNVTEMMQAILED 490
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
YL RA + + + +L SV Q F + + N D D
Sbjct: 491 SGYLSTLRAAHNLEADTRIENLEELLSVTQ------------GFDSRYQPENEDSD---- 534
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
F+D+++E + ++ VTL T+H +KGLE+ +VF+ E PL
Sbjct: 535 -----IFVDFLAELALLSDQDDVEEDAQEVTLMTLHAAKGLEFPVVFLVGMEEGLFPLSR 589
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHH 938
+ + +EEERRL YV +TRA++KL++ M+ Q SRF++EI
Sbjct: 590 -----ASMDESELEEERRLAYVGITRAKQKLYLSNAYGRMLYGQRQNNPASRFIEEINPD 644
Query: 939 LREV 942
L EV
Sbjct: 645 LLEV 648
>gi|260662791|ref|ZP_05863685.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum 28-3-CHN]
gi|260552872|gb|EEX25871.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum 28-3-CHN]
Length = 756
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 203/738 (27%), Positives = 337/738 (45%), Gaps = 119/738 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ +ND+Q EA PLL++AG GSGK + P +ILA+TFT
Sbjct: 7 LEGMNDKQSEAVL-TTEGPLLVMAGAGSGKTRVLTHRIAYLIEERHVLPWHILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ ++G+A ++ +STFH+ +++ R E+L F I +QR I
Sbjct: 66 AAREMKERVAKLLGEA-GNDVWVSTFHAMCVRILRRDIEQLGYNRAFTIADTSEQRTLI- 123
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+ E + I K +L+
Sbjct: 124 --KRICEEQNIDTKKFEPRQLLS------------------------------------- 144
Query: 410 GMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+ AK + + PA F K D + A + E Y L LD+ DLI +++L
Sbjct: 145 AISNAKNAMEDPATFAKNHQRPFDRMVARVYEAYQKELERNQTLDFDDLIMKTIELFKKA 204
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISG 524
PE YQD + I VDE+QDT+ QY L+ +LA + I +VGD DQSI+ + GA+++
Sbjct: 205 PETLTYYQDKFHYIHVDEYQDTNDAQYELVHMLAEKYENICVVGDADQSIYGWRGANMNN 264
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+F D+ N + L +NYRST+ I++AA+ +I +N++R KN+ T+N G KI
Sbjct: 265 ILNFEHDYPNAHSVMLEQNYRSTQTILKAANEVIANNLERKD-KNLWTENGAGEKISYYR 323
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
NE + FI+ KI E + Y AILYR +V + F + +P+ +
Sbjct: 324 AQNEHDEAQFIVKKIQEERAKHN---YQYQDFAILYRTNAQSRVIEETFLKSTVPYTMVG 380
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI-----DHIDKIS 698
G FY + +R ++A L + D + RV KR I + + + +
Sbjct: 381 GHRFYDRMEIRDLLAYLTLIVNPLDSMSFERVVNT--------PKRGIGMTSVERLREFA 432
Query: 699 TIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
++AA ++ A R+++ + +++ L+ +K++ IT + +
Sbjct: 433 QESNLPLLAAAQNVQNANAISARTRNKIEEFGQLITALQDEAKVLS--------ITDLTD 484
Query: 759 MVPQK--YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQ 816
V ++ YL E L +D L+ Q ++ +F S E +
Sbjct: 485 QVLERTGYLAE------------LQKDKTLQG--QTRRENLEEFKSV----TAEYDRQHE 526
Query: 817 DKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
D +G ++ L+ D+++ + + E +VTL T+H +KGLE+ ++F+ E
Sbjct: 527 DDEG-MDHLQKLTDFLAGLALVSDQDDVDEAEPAVTLMTLHAAKGLEFPVIFLIGMEEGV 585
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLK 933
PL +EEERRL YV +TRA+KKL+I M+ + Q +PS F++
Sbjct: 586 FPLSRAMT-----DNKELEEERRLAYVGITRAKKKLYITNAFSRMLYGHIQRNRPSEFVE 640
Query: 934 EIPHHLREVQAEQSVQDQ 951
EI L +Q+E Q +
Sbjct: 641 EITPEL--MQSENQNQGE 656
>gi|167039196|ref|YP_001662181.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X514]
gi|300913209|ref|ZP_07130526.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X561]
gi|307723777|ref|YP_003903528.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X513]
gi|166853436|gb|ABY91845.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X514]
gi|300889894|gb|EFK85039.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X561]
gi|307580838|gb|ADN54237.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X513]
Length = 711
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 219/725 (30%), Positives = 344/725 (47%), Gaps = 126/725 (17%)
Query: 245 LQSLNDQQLEAACGDMST--PLLIVAGPGSGKG---------------ISPSNILAMTFT 287
L +LND+Q EA M+T PLLI+AG GSGK ISPSNILA+TFT
Sbjct: 5 LNNLNDKQKEAV---MTTEGPLLILAGAGSGKTRVLTHRIAYLIKEKKISPSNILAITFT 61
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM+ R+ ++G +L +STFHS +++ R +K+ F+I+ Q+
Sbjct: 62 NKAAEEMKTRVEDLLG--YIGDLWVSTFHSACVRILRRDIDKIGYDRNFVIFDTTDQKAL 119
Query: 348 IIEAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
I E ++ L +EK VK + +NA+ SS
Sbjct: 120 IQECLKELNLSEKQYPVKTV--------------------LNAI-----SS--------- 145
Query: 407 ERDGMDVAKASGKTPAEFRKI-GDEIGAA----ILENYNGILRSCNALDYHDLISCSVKL 461
AK TP E+ + G+E + I + Y L+ NALD+ D+I +++L
Sbjct: 146 -------AKDKMVTPEEYIYVFGNEYRSKKISEIYKLYQKKLKKNNALDFDDIIIKTIEL 198
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGA 520
PEV YQ +K I+VDE+QDT+ QY + +LA R + +VGDDDQSI+ + GA
Sbjct: 199 FKESPEVLDFYQRKFKYIMVDEYQDTNTPQYHFVNMLAQKYRNLCVVGDDDQSIYGWRGA 258
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
D+ +F KD+ + K I+L +NYRST+ I+EAA+ +I +N++R + K + T+N G KI
Sbjct: 259 DVKNILNFEKDYPDAKVIKLEQNYRSTKTILEAANYVIDNNIRRKK-KTLWTNNEQGEKI 317
Query: 581 IIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKI 638
I+ E NE + F+I +I L+ N S+ AILYR + F+ A +I
Sbjct: 318 ILCELDNEREEAEFVIQEIISLKERENR-----SFRDFAILYRTNAQSRAFEEALMRVRI 372
Query: 639 PFNIHG-VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKI 697
P+ + G + FY +K ++ IIA LR + DD ++R+ + ++ I+ ++
Sbjct: 373 PYKVVGALRFYDRKEIKDIIAYLRILVNPYDDISFKRIIN---VPKRGIGAATIEALEAT 429
Query: 698 STIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVA 757
+ + S A D AK+S K S L LE+I K + ++S VI
Sbjct: 430 ALEKDTSLFFAIDD---AKVSQRAKNSLLEFKE---FILELIDK--KDTMTVSEVIN--- 478
Query: 758 NMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQD 817
Y+LE+ G + + + + + ++ +FL+ AA E +D
Sbjct: 479 ------YILEE-------TGYVEELEKEESEQAEGRIENLKEFLN----AAYEFEESSED 521
Query: 818 KKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
K L+AF+ I+ + + SV L T+H +KGLE+ +VF+ E
Sbjct: 522 KS-----LEAFLAGITLVSDIDLAGEIGE---SVVLMTLHSAKGLEFPVVFMVGMEEGIF 573
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM---MDANWQLLQPSRFLKE 934
P F + YV +TR+++KL++ Y + Q SRF+ E
Sbjct: 574 PSFKSFTDEYELEEERRL-----CYVGITRSKEKLYMTYARRRNLYGKSQYSSYSRFISE 628
Query: 935 IPHHL 939
IP
Sbjct: 629 IPERF 633
>gi|288905388|ref|YP_003430610.1| ATP-dependent DNA helicase (DNA helicase II) [Streptococcus
gallolyticus UCN34]
gi|325978377|ref|YP_004288093.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|386337833|ref|YP_006034002.1| DNA helicase II / ATP-dependent DNA helicase [Streptococcus
gallolyticus subsp. gallolyticus ATCC 43143]
gi|288732114|emb|CBI13679.1| Putative ATP-dependent DNA helicase (DNA helicase II)
[Streptococcus gallolyticus UCN34]
gi|325178305|emb|CBZ48349.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|334280469|dbj|BAK28043.1| DNA helicase II / ATP-dependent DNA helicase [Streptococcus
gallolyticus subsp. gallolyticus ATCC 43143]
Length = 771
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 211/732 (28%), Positives = 339/732 (46%), Gaps = 120/732 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDKQAEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R ++ ATA L I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMRERAMAL-NPATADTL-IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+L+N L D RA L + S + L +E
Sbjct: 121 --KRILKN-------------LNLDPKKWNERAILGTI------SNAKNDLLDEVAYENQ 159
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D+ +I A + Y LR A+D+ DLI +++L P+V
Sbjct: 160 AGDMYT--------------QIVAKCYKAYQEELRRSEAMDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 AYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+++I +N R + K + T N+ G +I+ +E
Sbjct: 266 EKDYPEAKVVLLEENYRSTKKILQAANAVINNNRNR-RPKKLWTQNADGEQIVYYRARDE 324
Query: 589 DAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHG 644
+ FI ID I+ ++ A+LYR + + A + IP+ + G
Sbjct: 325 REEAVFIASTIDNIVREEGK------NFKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGG 378
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTI 700
FY +K +R +I+ L D+ Y R+ E K+ V ++ I + +
Sbjct: 379 TKFYSRKEIRDVISYLNVIANTADNISYERIV-------NEPKRGVGPGTLEKIRDFANM 431
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
+ S + A+ +I +SG +G+ ++ + L++ + + +V +V
Sbjct: 432 QNMSLLDASANIM---LSG-------VKGKAAQAVWDLANLLMKLRDDLDQM--TVTELV 479
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
+ +L++ +D L N L S Q + ++ +FL+ + + +D+ G
Sbjct: 480 --EAVLDKTGYLD-----ALRVQNTLES--QARIENIEEFLTVTKNFDDNQEDAPEDESG 530
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIHQSKGLEWDIVFVAKANETEIPL 879
I+ L F++ ++ T D E + VTL T+H +KGLE+ IVF+ E PL
Sbjct: 531 -IDKLSRFLNDLALIAD----TDDGDAETAEVTLMTLHAAKGLEFPIVFLIGMEEGVFPL 585
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFL 932
E +EEERRL YV +TRA + LF+ +AN + L +PSRF+
Sbjct: 586 SR-----AAEDQDELEEERRLAYVGITRAEQLLFV----TNANTRTLFGKTSYNRPSRFI 636
Query: 933 KEIPHHLREVQA 944
+EI L + Q
Sbjct: 637 REIDDELLQYQG 648
>gi|417983132|ref|ZP_12623774.1| ATP-dependent DNA helicase [Lactobacillus casei 21/1]
gi|417995853|ref|ZP_12636140.1| ATP-dependent DNA helicase [Lactobacillus casei M36]
gi|417998768|ref|ZP_12638983.1| ATP-dependent DNA helicase [Lactobacillus casei T71499]
gi|418013444|ref|ZP_12653088.1| ATP-dependent DNA helicase [Lactobacillus casei Lpc-37]
gi|410528913|gb|EKQ03751.1| ATP-dependent DNA helicase [Lactobacillus casei 21/1]
gi|410536557|gb|EKQ11150.1| ATP-dependent DNA helicase [Lactobacillus casei M36]
gi|410540372|gb|EKQ14887.1| ATP-dependent DNA helicase [Lactobacillus casei T71499]
gi|410555970|gb|EKQ29901.1| ATP-dependent DNA helicase [Lactobacillus casei Lpc-37]
Length = 751
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 211/724 (29%), Positives = 328/724 (45%), Gaps = 108/724 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ +ND+Q EA P+LI+AG GSGK ++P NILA+TFT
Sbjct: 7 LKGMNDKQSEAVLA-TEGPVLIMAGAGSGKTRVLTHRIAYLVEEKHVNPWNILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+G +V A+++ +STFH+ +++ R +KL F I +Q
Sbjct: 66 AAREMRERVGKLVDAEIARDIWVSTFHALCVRILRRDIDKLGYNRAFTIADPAEQ----- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER- 408
+ +VK I D F ++ + S K E
Sbjct: 121 ----------LTLVKHILAD---------------FNLDPKRYDPKSILGAISSAKNELV 155
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D A +P F K+ A + Y LRS ALD+ DLI ++ L E
Sbjct: 156 DPQTYANEQANSP--FTKVV----AQVYAEYQKRLRSDQALDFDDLIMQTIVLFEKDKET 209
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDS 527
YQ ++ I VDE+QDT+ QY L+ +LA ++ + +VGD DQSI+ + GA++
Sbjct: 210 LAFYQRKFRYIHVDEYQDTNEAQYQLVHMLAEGYHNLCVVGDADQSIYGWRGANMQNILD 269
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F+KD+ + I L +NYRST+ I+ AA+ +IQ+N R Q K + T+N G KI +
Sbjct: 270 FKKDYPKAQVILLEQNYRSTKTILSAANDVIQNNQNR-QAKTLWTENREGDKITYYRAQS 328
Query: 588 EDAQCAFIIDKI-LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
E + F+I +I E A N YG AILYR + + AF + IP+ + G
Sbjct: 329 ETDEAIFVIRRIEAEIADNH----RKYGDFAILYRTNAQSRAIEEAFVKSNIPYKMVGGH 384
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIR 701
FY +K +R +A R + DD + R+ E K+ + ++ ++ +
Sbjct: 385 KFYDRKEIRDALAYFRLVVNPEDDMSFNRIV-------NEPKRGIGNTSVEKLEAFANEH 437
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
S + AA + + I+G R QL + K MI +L R ++ A +
Sbjct: 438 DWSLLEAAANAELSPIAGK-ARGQLAKFGK------MIQQLGTRRQDLNVTEMMQAILED 490
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
YL RA + + + +L SV Q F + + N D D
Sbjct: 491 SGYLSTLRAAHNLEADTRIENLEELLSVTQ------------GFDSRYQPENEDSD---- 534
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
F+D+++E + ++ VTL T+H +KGLE+ +VF+ E PL
Sbjct: 535 -----IFVDFLAELALLSDQDDVEEDAQEVTLMTLHAAKGLEFPVVFLVGMEEGLFPLSR 589
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHH 938
+ + +EEERRL YV +TRA++KL++ M+ Q SRF++EI
Sbjct: 590 -----ASMDESELEEERRLAYVGITRAKQKLYLSNAYGRMLYGQRQNNPASRFIEEINPD 644
Query: 939 LREV 942
L EV
Sbjct: 645 LLEV 648
>gi|270292792|ref|ZP_06199003.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. M143]
gi|270278771|gb|EFA24617.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. M143]
Length = 763
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 210/729 (28%), Positives = 337/729 (46%), Gaps = 115/729 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R + ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYGL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R + ++S+ K N D
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERT--------ILGTISNAK----NDLIDD 153
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ A+A + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 154 VVYAAQAG--------DMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K I L NYRST+ I++AA+ +I++N R + KN+ T N+ G +II ++E
Sbjct: 266 EKDYPNAKVILLEENYRSTKTILQAANDVIKNNQNR-RPKNLWTQNADGEQIIYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+ I E G + A+LYR + + A + IP+ + G F
Sbjct: 325 QDEAVFVAKTIDEL---GRTQNFLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRK 702
Y +K +R IIA L D+ + R+ E KR ++ I + ++
Sbjct: 382 YSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANMQD 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ +I + I G +S +L E + +L +I+ ++ +V
Sbjct: 434 MSMLDASANIMLSGIKGKAAQSIWDFANMILDLREQLDQL-----TITELVEAV------ 482
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
LE+ +D +LN L S + + ++ +FLS T ++ Q+++ +
Sbjct: 483 ---LEKTGYID-----ILNAQATLESKAR--VENIEEFLSV--TKNFDDNPDSQEEETGL 530
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 531 DKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFIIGMEENVFPLSR- 586
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+ EI
Sbjct: 587 ----AAEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTSYNRPTRFINEI 638
Query: 936 PHHLREVQA 944
L + Q
Sbjct: 639 SSDLLDYQG 647
>gi|417986366|ref|ZP_12626937.1| ATP-dependent DNA helicase [Lactobacillus casei 32G]
gi|418001676|ref|ZP_12641811.1| ATP-dependent DNA helicase [Lactobacillus casei UCD174]
gi|410526090|gb|EKQ00981.1| ATP-dependent DNA helicase [Lactobacillus casei 32G]
gi|410545937|gb|EKQ20215.1| ATP-dependent DNA helicase [Lactobacillus casei UCD174]
Length = 751
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 211/724 (29%), Positives = 328/724 (45%), Gaps = 108/724 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ +ND+Q EA P+LI+AG GSGK ++P NILA+TFT
Sbjct: 7 LKGMNDKQSEAVLA-TEGPVLIMAGAGSGKTRVLTHRIAYLVEEKHVNPWNILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+G +V A+++ +STFH+ +++ R +KL F I +Q
Sbjct: 66 AAREMRERVGKLVDAEIARDIWVSTFHALCVRILRRDIDKLGYNRAFTIADPAEQ----- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER- 408
+ +VK I D F ++ + S K E
Sbjct: 121 ----------LTLVKHILAD---------------FNLDPKRYDPKSILGAISSAKNELV 155
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D A +P F K+ A + Y LRS ALD+ DLI ++ L E
Sbjct: 156 DPQTYANEQANSP--FTKVV----AQVYAEYQKRLRSDQALDFDDLIMQTIVLFEKDKET 209
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDS 527
YQ ++ I VDE+QDT+ QY L+ +LA ++ + +VGD DQSI+ + GA++
Sbjct: 210 LAFYQRKFRYIHVDEYQDTNEAQYQLVHMLAEGYHNLCVVGDADQSIYGWRGANMQNILD 269
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F+KD+ + I L +NYRST+ I+ AA+ +IQ+N R Q K + T+N G KI +
Sbjct: 270 FKKDYPKAQVILLEQNYRSTKTILSAANDVIQNNQNR-QAKTLWTENREGDKITYYRAQS 328
Query: 588 EDAQCAFIIDKI-LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
E + F+I +I E A N YG AILYR + + AF + IP+ + G
Sbjct: 329 ETDEAIFVIRRIEAEIADNH----RKYGDFAILYRTNAQSRAIEEAFVKSNIPYKMVGGH 384
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIR 701
FY +K +R +A R + DD + R+ E K+ + ++ ++ +
Sbjct: 385 KFYDRKEIRDALAYFRLVVNPEDDMSFNRIV-------NEPKRGIGNTSVEKLEAFANEH 437
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
S + AA + + I+G R QL + K MI +L R ++ A +
Sbjct: 438 DWSLLEAAANAELSPIAGK-ARGQLAKFGK------MIQQLGTRRKDLNVTEMMQAILED 490
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
YL RA + + + +L SV Q F + + N D D
Sbjct: 491 SGYLSTLRAAHNLEADTRIENLEELLSVTQ------------GFDSRYQPENEDSD---- 534
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
F+D+++E + ++ VTL T+H +KGLE+ +VF+ E PL
Sbjct: 535 -----IFVDFLAELALLSDQDDVEEDAQEVTLMTLHAAKGLEFPVVFLVGMEEGLFPLSR 589
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHH 938
+ + +EEERRL YV +TRA++KL++ M+ Q SRF++EI
Sbjct: 590 -----ASMDESELEEERRLAYVGITRAKQKLYLSNAYGRMLYGQRQNNPASRFIEEINPD 644
Query: 939 LREV 942
L EV
Sbjct: 645 LLEV 648
>gi|226950697|ref|YP_002805788.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A2 str.
Kyoto]
gi|226843377|gb|ACO86043.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A2 str.
Kyoto]
Length = 738
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 206/707 (29%), Positives = 341/707 (48%), Gaps = 144/707 (20%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EAA + PLLI+AG GSGK I PS ILA+TFT AA
Sbjct: 7 LNKEQYEAAIT-IDGPLLILAGAGSGKTRVLTYRIAHMIENLNIYPSKILAITFTNKAAG 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++RI ++VG + + +STFHS +++ R +KL F IY Q+ + + +
Sbjct: 66 EMKERIKALVGDV-VEGMWVSTFHSSCVRILRREIDKLGYDKNFTIYDTYDQKTLVKQCM 124
Query: 353 RLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
L N+K + + I + T G+ ++D +
Sbjct: 125 EELNINDKEITDREI----INTIGN------------------------------QKDNL 150
Query: 412 DVAKASGKTPAEFRKIG------DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+P EF+KI D I A + Y L++ NALD+ DLI +V+L T
Sbjct: 151 -------ISPKEFKKISNGNYRKDRIADAYIL-YQKKLKTNNALDFDDLIYKTVELFKTN 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISG 524
V + YQ +K I+VDE+QDT+ QY L+++LA H + +VGDDDQ I+ + GADIS
Sbjct: 203 KNVLEFYQRKFKYIMVDEYQDTNKSQYELVKLLALVHRNMCVVGDDDQCIYEWRGADISN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+F KD+ K I+L +NYRS I+ AA+ +I++N +R K ++T+N +G+KI +
Sbjct: 263 ILNFEKDYKEAKVIKLEQNYRSKGNILNAANEVIKNNSQRKN-KVLRTENENGNKIKVFR 321
Query: 585 CHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN 641
+++ + F+ I KI++ + S+ A+LYR ++F+ F +R IP+
Sbjct: 322 AYSDIDEAKFVASEIKKIIKDSER------SFNDFAVLYRTNAQSRIFEDVFMKRDIPYR 375
Query: 642 -IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTI 700
I G+ FY +K ++ ++A L+ DD RR+ KR I +T+
Sbjct: 376 LIGGLKFYDRKEIKDLMAYLKLINNPLDDISLRRIINV--------PKRSIGD----ATV 423
Query: 701 RKCSFISAACD------IFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRR--EPSISAV 752
+K + D + A T + +T +K + +++ +R+ E S+SA+
Sbjct: 424 KKVQEFANEMDECMYSVLLDADQILTLSQRSITSIKKF---VSIMNSFIRKKDEISVSAL 480
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDN--DLRSV--LQYLLADVTDFLSTKFTAA 808
I K +LE+ + +L N N D+ V L+ L++ DF
Sbjct: 481 I---------KEILEETGYL----KELKNSKNPDDVSRVENLKELVSAAADF-------- 519
Query: 809 KEEGNVDQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIV 867
E + D+ L AF++ ++ + +++ +N +SV + T+H +KGLE+ +V
Sbjct: 520 -ERESEDKS-------LGAFLEKVALVTDIDNY----DENSDSVAMMTVHSAKGLEFPVV 567
Query: 868 FVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI 914
F+ P + +EE RRL YVA+TRA+++L+I
Sbjct: 568 FMVGMENGIFPGTQSLSDP-----KEMEESRRLCYVAITRAKEQLYI 609
>gi|197336384|ref|YP_002157309.1| ATP-dependent DNA helicase Rep [Vibrio fischeri MJ11]
gi|197317874|gb|ACH67321.1| ATP-dependent DNA helicase Rep [Vibrio fischeri MJ11]
Length = 671
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 204/734 (27%), Positives = 351/734 (47%), Gaps = 97/734 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN QQ EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPQQDEA-VKFVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G +GK ++ L +STFHS L + R + L + F ++
Sbjct: 62 EMKERVGQTLGKQESRGLMVSTFHSLGLDIIRREYKVLGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ + DG +R L S+S++K D +
Sbjct: 110 ---DQDQLALLKELTEKQI--DGDKDLLR--------QLLSSISNWK--------NDMLT 148
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
A+ G +E D++ A E Y +++ NALD+ DLIS V LL T EV + +
Sbjct: 149 PAQVKGFARSE----QDQLFAFCYEMYLNQMKAYNALDFDDLISLPVLLLRTNQEVRERW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q + ++VDE+QDT+ QY L+++L R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QMKIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLNED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
+ N + I+L +NYRST I+ AA+ LI +N + K + ++ G +I I +++ +
Sbjct: 265 YPNLRVIKLEQNYRSTSRILRAANILIANNPHAFE-KRLFSEIPDGEQIKILTAKDDEHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
++ +++ H + Y A+LYR ++ + + + ++P+ I G +F+ +
Sbjct: 324 AERVVGELIAHRF---LNRTDYKDYAVLYRGNHQSRLIEKSLVQNRVPYKISGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR DD + RV +E ++ + + +R S ++
Sbjct: 381 AEIKDIMAYLRLLTNPDDDNAFLRVVNT---PRREIGPVTLEKLGSYANMRGKSLFESSF 437
Query: 711 DIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRA 770
+I + T L R+ + IS+ R ++ AV + V ++ + +L E
Sbjct: 438 EI---GLEQTLSGRGLESLRRFCHWIVSISENAERGNTVEAVRSLVKDIHYEDWLYETST 494
Query: 771 VVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAFI 829
+ + +V+D S + A EG N D ++K LK +
Sbjct: 495 SA---------------KAAEMRMKNVSDLYS--WIVADLEGDNYDNEEK----TLKEVV 533
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
++ R+ R + D + V L T+H SKGLE+ V++ A E +P H+ +++E
Sbjct: 534 QKLTLRDMME-RGEDEDGADQVQLMTLHASKGLEFPYVYLIGAEEGILP--HQ--TSIDE 588
Query: 890 KGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLL--QPSRFLKEIPHHLREVQAEQ 946
+VEEERRL YV +TRA+K+L F L +L+ +PSRFL+E+PH + + ++
Sbjct: 589 D--NVEEERRLAYVGITRAQKELTFTLCKERRQYGELIRPEPSRFLEELPHDDLDWEMKK 646
Query: 947 SVQDQHENIPEGTA 960
Q E + G A
Sbjct: 647 PKPTQEERMERGKA 660
>gi|410494826|ref|YP_006904672.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Streptococcus
dysgalactiae subsp. equisimilis AC-2713]
gi|410439986|emb|CCI62614.1| K03657 DNA helicase II / ATP-dependent DNA helicase PcrA
[Streptococcus dysgalactiae subsp. equisimilis AC-2713]
Length = 772
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 205/729 (28%), Positives = 335/729 (45%), Gaps = 114/729 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q +A PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAQA-VQTTEGPLLIMAGAGSGKTRVLTHRMAYLIDEKFVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R ++ K+ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKER--ALALNPATKDTLIATFHSMCVRILRREADHIGYNRNFTIVDPGEQR---- 117
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R+ L + S + L ++E
Sbjct: 118 -----------TLMKRI-LKQLNLDPKKWNERSILGTI------SNAKNDLLDEKRYEAQ 159
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D+ +I A + Y LR A D+ DLI +++L + P+V
Sbjct: 160 AADMYS--------------QIVARCYKAYQEELRRSEAWDFDDLIMMTLRLFDSNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 AYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + K + L NYRST+ I++AA+ +I +N R + K + T N+ G +++ ++E
Sbjct: 266 EKDYPDAKVVLLEENYRSTKKILQAANDVINNNRNR-RPKKLWTQNADGEQLVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASIC-SYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
+ F+ I SN + ++ A+LYR + + A + IP+ + G
Sbjct: 325 RDEAVFVASTI----SNMAQELGKNFKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTK 380
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIRK 702
FY +K +R +IA L D+ + R+ E K+ V +D + + +
Sbjct: 381 FYSRKEIRDLIAYLTIVANPADNISFERIV-------NEPKRGVGPGTLDKLRQFAYESN 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + AA ++F + + G + + + L I +R++ + IT +A
Sbjct: 434 QSLLEAASNLFMSPLKG--------KAAQAMTDLAGILNQLRQDLETMS-ITDLA----- 479
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
+ LLE+ +D L N L S Q + ++ +FLS + + ++D+ G
Sbjct: 480 EALLEKTGYLDS-----LRLQNTLES--QARIENIEEFLSVTKNFDESSASQEEDETGVD 532
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ + D +T+ +T+ + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 533 RLGRFLNDLALIADTDDSQTEAAE----VTLMTLHAAKGLEFPVVFLIGMEEGVFPLSR- 587
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
+E +EEERRL YV +TRA + LF M +AN + L +P+RFL EI
Sbjct: 588 ----ASEDPDELEEERRLAYVGITRAEEVLF----MTNANTRTLFGKSSYNRPTRFLNEI 639
Query: 936 PHHLREVQA 944
L Q
Sbjct: 640 SEELLSYQG 648
>gi|307703485|ref|ZP_07640427.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis ATCC 35037]
gi|307622892|gb|EFO01887.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis ATCC 35037]
Length = 739
Score = 227 bits (579), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 213/732 (29%), Positives = 338/732 (46%), Gaps = 121/732 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R + ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYGL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R+ L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERSILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGD---EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
DVA A+ + GD +I A Y LR ++D+ DLI +++L P
Sbjct: 153 --DVAYAT--------QAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNP 202
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGF 525
+V YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+
Sbjct: 203 DVLTYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNI 262
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
F KD+ N K + L NYRST+ I++AA+ +I++N R + KN+ T N G +II
Sbjct: 263 LDFEKDYPNAKVVLLEENYRSTKTILQAANDVIKNNKNR-RPKNLWTQNPDGEQIIYYRA 321
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHG 644
++E + F+ I E G + + A+LYR + + A + IP+ + G
Sbjct: 322 NDEQDEAVFVAKTIDEL---GRSQNFLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGG 378
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKIST 699
FY +K +R IIA L D+ + R+ E KR ++ I +
Sbjct: 379 TKFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRGFAN 430
Query: 700 IRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANM 759
++ S + A+ +I + I G +S +L E + +L +I+ ++ +V
Sbjct: 431 MQDMSMLDASANIMLSGIKGKAAQSIWDFANMILDLREKLDQL-----TITELVEAV--- 482
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
LE+ +D +LN L S + + ++ +FLS T ++ Q+++
Sbjct: 483 ------LEKTGYID-----ILNAQATLESKAR--VENIEEFLSV--TKNFDDNPDSQEEE 527
Query: 820 GCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 528 TGLDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFIIGMEENVFPL 584
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFL 932
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 585 SR-----AAEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFI 635
Query: 933 KEIPHHLREVQA 944
EI L E Q
Sbjct: 636 NEISSDLIEYQG 647
>gi|417933997|ref|ZP_12577317.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis bv. 2 str.
F0392]
gi|340770567|gb|EGR93082.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis bv. 2 str.
F0392]
Length = 763
Score = 227 bits (579), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 207/737 (28%), Positives = 335/737 (45%), Gaps = 131/737 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R + ++ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKERAYGL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLMK 121
Query: 350 EAVRLLE------NEKILV--VKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
++ L NE+ ++ + D++
Sbjct: 122 RILKQLNLDPKKWNERTILGTISNAKNDLID----------------------------- 152
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
DVA A A+ + +I A Y LR ++D+ DLI +++L
Sbjct: 153 ----------DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRL 197
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGA 520
P+V YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GA
Sbjct: 198 FDQNPDVLTYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGA 257
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
D+ F KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I
Sbjct: 258 DMQNILDFEKDYPQAKVVLLEENYRSTKTILQAANDVIKNNKNR-RPKNLWTQNADGEQI 316
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
+ ++E + F+ I E G + + A+LYR + + A + IP+
Sbjct: 317 VYYRANDEQDEAVFVAKTIDEL---GRSQNFLHKDFAVLYRTNAQSRTIEEALLKSNIPY 373
Query: 641 N-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHI 694
+ G FY +K +R IIA L D+ + R+ E KR ++ I
Sbjct: 374 TMVGGTKFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKI 425
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+ ++ S + A+ +I + I G +S +L E + +L SI+ ++
Sbjct: 426 RDFANMQDLSMLDASANIMLSGIKGKAAQSIWDFANMILDLREQLDQL-----SITELVE 480
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
+V LE+ VD +LN L S + + ++ +FLS T ++
Sbjct: 481 AV---------LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSV--TKNFDDNPD 522
Query: 815 DQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
Q+ + ++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E
Sbjct: 523 SQEDETGLDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFIIGMEE 579
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------Q 927
PL E +EEERRL YV +TRA K ILY + +AN +LL +
Sbjct: 580 NVFPLSR-----AAEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNR 630
Query: 928 PSRFLKEIPHHLREVQA 944
P+RF+ EI L E Q
Sbjct: 631 PTRFINEISSDLLEYQG 647
>gi|306829578|ref|ZP_07462768.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis ATCC 6249]
gi|304428664|gb|EFM31754.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis ATCC 6249]
Length = 763
Score = 227 bits (579), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 212/729 (29%), Positives = 337/729 (46%), Gaps = 115/729 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R + ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYGL--NPATQDCLIATFHSMCVRILRHDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +II ++E
Sbjct: 266 EKDYPQAKVVLLEENYRSTKTILQAANDVIKNNKNR-RPKNLWTQNADGEQIIYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+ I E G + + A+LYR + + A + IP+ + G F
Sbjct: 325 QDEAVFVAKTIDEL---GRSQNFLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRK 702
Y +K +R IIA L D+ + R+ E KR ++ I + +++
Sbjct: 382 YSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANLQE 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ +I + I G +S +L E + +L SI+ ++ +V
Sbjct: 434 MSMLDASANIMLSGIKGKAAQSIWDFANMILDLREQLDQL-----SITELVEAV------ 482
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
LE+ V+ +LN L S + + ++ +FLS T ++ Q+++ +
Sbjct: 483 ---LEKTGYVE-----ILNAQATLESKAR--VENIEEFLSV--TKNFDDNPDSQEEETGL 530
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 531 DKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFIIGMEENVFPLSR- 586
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+ EI
Sbjct: 587 ----AAEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTSYNRPTRFINEI 638
Query: 936 PHHLREVQA 944
L E Q
Sbjct: 639 SSDLLEYQG 647
>gi|433655733|ref|YP_007299441.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433293922|gb|AGB19744.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 716
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 153/449 (34%), Positives = 234/449 (52%), Gaps = 62/449 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L LND+Q EA PLLI+AG GSGK +SP+NILA+TFT
Sbjct: 4 LDKLNDRQKEAVVT-TEGPLLILAGAGSGKTRVLTHRIAYLIKEKRVSPANILAITFTNK 62
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+DR+ S++G ++ +STFHS +++ R EK+ F+IY Q+ +
Sbjct: 63 AAQEMKDRVESLLG--YVGDIWVSTFHSACVRILRRDIEKIGYDKNFVIYDTQDQKSLVS 120
Query: 350 EAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
+ ++ L+ NEK K G + A + M+ S + L N +
Sbjct: 121 DCIKELDLNEKQYTPK-------------GMLSAISKAKDKMI--SPDEYLLEFGNDYRN 165
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
+K+ D + Y L+ NALD+ D+I +++L E+
Sbjct: 166 ----------------KKVAD-----VYRLYQKKLKKDNALDFDDIIIKTIELFKKDEEI 204
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDS 527
+ YQD ++ I+VDE+QDT+ QY + +LA R + +VGDDDQSI+ + GADI
Sbjct: 205 LRYYQDRFRYIMVDEYQDTNRPQYEFVNLLAKRYRNLCVVGDDDQSIYGWRGADIKNILD 264
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KD+ K I+L +NYRST+ I++AA+++I +N+KR + K + TDN G KI++ E N
Sbjct: 265 FEKDYPEAKVIKLEQNYRSTQIILDAANNVIDNNIKRKK-KQLWTDNKDGEKIVVCEVQN 323
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG-VA 646
E + FIID+I + +NG Y AILYR ++F+ A IP+ + G +
Sbjct: 324 EREEANFIIDRIKDLIANGK----KYSDFAILYRTNAQSRIFEEACMMNDIPYKLVGALR 379
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRV 675
FY +K ++ IIA LR + DD +R+
Sbjct: 380 FYDRKEIKDIIAYLRILVNPYDDVSLKRI 408
Score = 47.4 bits (111), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Query: 850 SVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRAR 909
SV L T+H +KGLE+ +VF+A E P F +EEERRL YV +TRA+
Sbjct: 544 SVVLMTLHSAKGLEFPVVFMAGMEEGIFPSSMSFIDE-----HELEEERRLCYVGITRAK 598
Query: 910 KKLFILYVM---MDANWQLLQPSRFLKEIPHHL 939
++LF+ Y + Q SRF+ EIP L
Sbjct: 599 ERLFMTYARTRNLYGKPQYNTASRFINEIPQDL 631
>gi|56962858|ref|YP_174585.1| ATP-dependent DNA helicase UvrD [Bacillus clausii KSM-K16]
gi|56909097|dbj|BAD63624.1| UvrD/REP family ATP-dependent DNA helicase [Bacillus clausii
KSM-K16]
Length = 751
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 216/734 (29%), Positives = 342/734 (46%), Gaps = 128/734 (17%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFT 287
+ L LN +Q + A + PLL++AG GSGK P +LA+TFT
Sbjct: 11 RMLSELNPEQ-QKAVTHSNGPLLLMAGAGSGKTRVLTYRISYLLRRHSTPPWAVLALTFT 69
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM+DR+ +VG A+++ ISTFHS +++ R +++ + F I
Sbjct: 70 NKAAREMKDRVAQLVG-PIAEDIWISTFHSMCVRMLRRDIDRIGYSRNFTI--------- 119
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
L ++++ V+K+I F +A L M++A
Sbjct: 120 ------LDSSDQLSVIKQILKSQNVDPKKFD-PKAILGMISA------------------ 154
Query: 408 RDGMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
AK +T ++F +I +++ A + Y L+ NALD+ DLI +++L +
Sbjct: 155 ------AKNELQTASKFAQIASGVFEQVAADVYSEYEKRLKQNNALDFDDLIMKTIQLFN 208
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADI 522
PEV YQ ++ I VDE+QDT+ QY L+++L I +VGD DQSI+ + GADI
Sbjct: 209 EVPEVLDFYQRKFQYIHVDEYQDTNKAQYRLVKLLGDRLQNICVVGDSDQSIYRWRGADI 268
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
SF KD+ + I L +NYRST+ I++AA+S+I +N R + KN+ T+N G+KI +
Sbjct: 269 QNILSFEKDYPDATVILLEQNYRSTKTILKAANSVIANNGNR-KPKNLWTENDEGAKISV 327
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI 642
E E A+ F+++KI E A+ P SY +AILYR ++ + F + + +NI
Sbjct: 328 YEAATEQAEAQFVVEKIKEAAAE-PG--FSYKDVAILYRTNAQSRIIEEYFVKSNLDYNI 384
Query: 643 -HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
G FY +K ++ ++A LR DD +RV KR I +T+
Sbjct: 385 VGGTKFYDRKEIKDVLAYLRLVANPDDDISLQRVVNV--------PKRGIGA----TTVD 432
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
K I+A D G + K L LE I R + V N V
Sbjct: 433 K---IAAYADAHGLSMF------------KALGELEQIGVTARARTKLVEFRDQVNNWVH 477
Query: 762 -QKYLLEQRAV---VDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQ 816
Q YL V +D G + +L + + + Q L ++ +F++ +E
Sbjct: 478 MQDYLSVTELVEELLDKTGYREMLKNEQTIEA--QSRLENIDEFITV-----TQEFEKRS 530
Query: 817 DKKGCINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
++K ++ L A + I + + + T++ ++TL T+H +KGLE+ VF+ E
Sbjct: 531 EEKDLVSFLTDLALVADIDQLDKDEEATKKE----AITLMTLHSAKGLEFPYVFLIGMEE 586
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQ 927
P +EEERRL YV +TRA K+L++ LY + N
Sbjct: 587 GVFPHSRSLFEE-----EEMEEERRLAYVGITRAEKRLYLTSAKMRTLYGRTNTN----P 637
Query: 928 PSRFLKEIPHHLRE 941
SRF+ EIP L E
Sbjct: 638 TSRFIAEIPAELIE 651
>gi|335357691|ref|ZP_08549561.1| ATP-dependent DNA helicase [Lactobacillus animalis KCTC 3501]
Length = 741
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 216/733 (29%), Positives = 337/733 (45%), Gaps = 133/733 (18%)
Query: 245 LQSLNDQQLEA-ACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTT 288
L +ND+Q EA AC + PLLI+AG GSGK ++P NILA+TFT
Sbjct: 7 LDGMNDKQAEAVACTE--GPLLIMAGAGSGKTRVLTHRVAYLIEEKNVNPWNILAITFTN 64
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA EMR+RI ++ + A+++ +STFH+ +++ R AEK+ F I +QR
Sbjct: 65 KAAREMRERINKLIAEG-AEDIWVSTFHALCVRILRRDAEKIGYDRNFTIASTSEQR--- 120
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
++K I D L D RA L
Sbjct: 121 ------------TLMKHILADNLNVDVKKFEPRAVL------------------------ 144
Query: 409 DGMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLST 464
+ AK KTPAE RK ++ + E Y L++ ALD+ DLI +++L
Sbjct: 145 SAISNAKNDLKTPAELRKDAADPFSQVVSDAYELYQEQLQNNQALDFDDLIMQTIRLFKE 204
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADIS 523
PE YQ + I VDE+QDT+ QY L+ +LA ++ + +VGD DQSI+ + GA++
Sbjct: 205 SPETLAFYQRKFHYIHVDEYQDTNEAQYQLVSMLAQTYRNLCVVGDADQSIYGWRGANME 264
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
+F +D+ + I+L +NYRST+ I++AA+ +I++N+ R + K + T N+ G KI
Sbjct: 265 NIMNFEEDYPDATVIKLEQNYRSTKTILQAANEVIENNINR-KAKTLWTQNAEGEKIHYY 323
Query: 584 ECHNEDAQCAFIIDKILEHA-SNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI 642
N + + +++ +I + + G YG A+LYR +V + F + IP+ +
Sbjct: 324 RADNANDEAFYVVKQIQQKMRTEGK----HYGDFAVLYRTNAQSRVIEETFVKANIPYKL 379
Query: 643 HGV-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID-----HIDK 696
G FY +K + I+A LR D + RV E KR I +
Sbjct: 380 VGAHRFYDRKEILDILAYLRLAANPNDSLSFARV--------ANEPKRGIGATSLAKLQA 431
Query: 697 ISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRR--EPSISAVIT 754
+ + S I AA ++ +SG K LE +KL+RR E + IT
Sbjct: 432 FAEMNGLSLIEAAENVIMTGVSG-----------KAATQLESFAKLIRRFNELEKTKNIT 480
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKL-LNEDNDLRSVLQYLLADVTDFLST--KF--TAAK 809
+ + ++D G K L N L Q L ++ +F+S +F
Sbjct: 481 ELTEI-----------ILDESGYKQSLQAKNTLED--QSRLENLEEFMSVTKQFDENWEP 527
Query: 810 EEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFV 869
EE N D F+D++++ + ++ + VTL T+H +KGLE+ VF+
Sbjct: 528 EEENSD-----------PFVDFLADLALVSDQDSVDEDPDEVTLMTLHAAKGLEFPTVFL 576
Query: 870 AKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI---LYVMMDANWQLL 926
E PL G + +EEERRL YV +TRA ++L++ M+ Q
Sbjct: 577 MGLEEGIFPL-----GRAVMDESELEEERRLAYVGITRAEEELYLSNAFSRMLYGRRQSN 631
Query: 927 QPSRFLKEIPHHL 939
Q SRF+ EI L
Sbjct: 632 QVSRFISEISDEL 644
>gi|306833580|ref|ZP_07466707.1| ATP-dependent DNA helicase PcrA [Streptococcus bovis ATCC 700338]
gi|304424350|gb|EFM27489.1| ATP-dependent DNA helicase PcrA [Streptococcus bovis ATCC 700338]
Length = 771
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 211/733 (28%), Positives = 337/733 (45%), Gaps = 122/733 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDKQAEA-VKTTDGPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R ++ ATA L I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMRERAMAL-NPATADTL-IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+L+N L D RA L + S + L +E
Sbjct: 121 --KRILKN-------------LNLDPKKWNERAILGTI------SNAKNDLLDEVAYENQ 159
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D+ +I A + Y LR A+D+ DLI +++L P+V
Sbjct: 160 ASDMYT--------------QIVAKCYKAYQEELRRSEAMDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 AYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+++I +N R + K + T N+ G +I+ +E
Sbjct: 266 EKDYPEAKVVLLEENYRSTKKILQAANAVINNNRNR-RPKKLWTQNADGEQIVYYRARDE 324
Query: 589 DAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHG 644
+ F+ ID I+ ++ A+LYR + + A + IP+ + G
Sbjct: 325 REEAVFVASTIDNIVREEGK------NFKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGG 378
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTI 700
FY +K +R +I+ L D+ Y R+ E K+ V ++ I + +
Sbjct: 379 TKFYSRKEIRDVISYLNVIANTADNISYERIV-------NEPKRGVGPGTLEKIRDFANM 431
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVR-REPSISAVITSVANM 759
+ S + A+ +I +SG +G+ ++ + L++ R+ +T +
Sbjct: 432 QNMSLLDASANIM---LSG-------VKGKAAQAVWDLANLLMKFRDDLDQMTVTELVEA 481
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
V L++ +D L N L S Q + ++ +FL+ + + +D+
Sbjct: 482 V-----LDKTGYLD-----ALRVQNTLES--QARIENIEEFLTVTKNFDDNQEDAPEDES 529
Query: 820 GCINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIHQSKGLEWDIVFVAKANETEIP 878
G I+ L F++ ++ T D E + VTL T+H +KGLE+ IVF+ E P
Sbjct: 530 G-IDKLSRFLNDLALIAD----TDDGDAETAEVTLMTLHAAKGLEFPIVFLIGMEEGVFP 584
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRF 931
L E +EEERRL YV +TRA + LF+ +AN + L +PSRF
Sbjct: 585 LSR-----AAEDQDELEEERRLAYVGITRAEQLLFV----TNANTRTLFGKTSYNRPSRF 635
Query: 932 LKEIPHHLREVQA 944
++EI L + Q
Sbjct: 636 IREIDDELLQYQG 648
>gi|386712931|ref|YP_006179253.1| ATP-dependent DNA helicase PcrA [Halobacillus halophilus DSM 2266]
gi|384072486|emb|CCG43976.1| ATP-dependent DNA helicase PcrA [Halobacillus halophilus DSM 2266]
Length = 744
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 217/736 (29%), Positives = 342/736 (46%), Gaps = 114/736 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++ LN++Q A PLLI+AG GSGK ++P NILA+TFT
Sbjct: 9 IKGLNEEQRNAVT-HTEGPLLIMAGAGSGKTRVLTHRIAYLLSEKDVAPRNILAITFTNK 67
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+DR+ S+VGK K + +STFHS +++ R +++ F I Q I
Sbjct: 68 AAREMKDRVESLVGKDGEK-IWMSTFHSMCVRILRRDIDRIGYDRNFSILDSSDQLSVIK 126
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ V+K ++ D D RA M+ A+ S S +L +E+
Sbjct: 127 Q-----------VLKELNLDPKRWDP-----RA---MLGAI---SNSKNELMTPEDYEQ- 163
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
KA + +E A I + Y LR +LD+ DLI ++ L PEV
Sbjct: 164 -----KAGS--------MHEEQIAKIYKGYQKKLRKNQSLDFDDLIMQTLSLFDRVPEVL 210
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ ++ I VDE+QDT+ QY L++ LAS + + +VGD DQSI+++ GADI +F
Sbjct: 211 EYYQRRFQYIHVDEYQDTNHAQYQLVKQLASRYKNLCVVGDSDQSIYAWRGADIQNILNF 270
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
D+ N + I L +NYRST I+ AA+++I +N R + K + TDN G KI + + E
Sbjct: 271 ESDYPNARTILLEQNYRSTELILNAANNVIDNNSGR-KPKRLWTDNDGGDKIHYHQANTE 329
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+ DKI + G Y AILYR + + F + +P+ I G F
Sbjct: 330 REEALFVTDKIEDLIRQGR---FQYKDAAILYRTNAQSRTIEETFVKAGVPYQMIGGTKF 386
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIRKC 703
Y +K ++ ++A LR DD ++RV E K+ V +D + +T
Sbjct: 387 YDRKEIKDMLAYLRLIANPNDDLSFQRVV-------NEPKRGVGKTSMDKMMAYATDHDI 439
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
S AA ++ +S ++ ++ +MI +++ +SA +MV
Sbjct: 440 SLYEAAAEVDFVGVSAKAAKA-------IMAFRKMIQNWTQQQEFLSAT-----DMV--- 484
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
Q + ++L + + + Q L ++ +F S T EE + D+ +
Sbjct: 485 ----QDVITKTGYEEMLRNEKSIEA--QSRLENIEEFKSV--TKNFEENSEDKTLIAFLT 536
Query: 824 VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
L D S E ++++VTL T+H +KGLE+ +VF+ E P
Sbjct: 537 DLALIADIDSMNEDP-------SSDDTVTLMTLHSAKGLEFPLVFLIGMEENVFPHSRAL 589
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQL--LQP-SRFLKEIPHHLR 940
+ +EEERRL YV +TRA K+LFI + M + + P SRF+ EIP L
Sbjct: 590 MEE-----SEMEEERRLAYVGITRAEKQLFITHAKMRTLYGRTNMNPISRFINEIPEDLV 644
Query: 941 EVQAEQSVQDQHENIP 956
E ++Q E +P
Sbjct: 645 E------GKEQPEELP 654
>gi|167038090|ref|YP_001665668.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320116497|ref|YP_004186656.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166856924|gb|ABY95332.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319929588|gb|ADV80273.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 711
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 218/725 (30%), Positives = 344/725 (47%), Gaps = 126/725 (17%)
Query: 245 LQSLNDQQLEAACGDMST--PLLIVAGPGSGKG---------------ISPSNILAMTFT 287
L +LND+Q EA M+T PLLI+AG GSGK +SPSNILA+TFT
Sbjct: 5 LGNLNDKQREAV---MTTEGPLLILAGAGSGKTRVLTHRIAYLIKEKKVSPSNILAITFT 61
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM+ R+ ++G +L +STFHS +++ R +K+ F+I+ Q+
Sbjct: 62 NKAAEEMKTRVEDLLG--YIGDLWVSTFHSACVRILRRDIDKIGYDRNFVIFDTTDQKAL 119
Query: 348 IIEAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
I E ++ L +EK VK + +NA+ SS
Sbjct: 120 IQECLKELNLSEKQYPVKTV--------------------LNAI-----SS--------- 145
Query: 407 ERDGMDVAKASGKTPAEFRKI-GDEIGAA----ILENYNGILRSCNALDYHDLISCSVKL 461
AK TP E+ + G+E + I + Y L+ NALD+ D+I +++L
Sbjct: 146 -------AKDKMVTPEEYIYVFGNEYRSKKISEIYKLYQKKLKKNNALDFDDIIIKTIEL 198
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGA 520
PEV YQ +K I+VDE+QDT+ QY + +LA R + +VGDDDQSI+ + GA
Sbjct: 199 FKESPEVLDFYQRKFKYIMVDEYQDTNTPQYHFVNMLAQKYRNLCVVGDDDQSIYGWRGA 258
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
D+ +F KD+ + K I+L +NYRST+ I+EAA+ +I +N++R + K + T+N G KI
Sbjct: 259 DVKNILNFEKDYPDAKVIKLEQNYRSTKTILEAANYVIDNNIRRKK-KTLWTNNEQGEKI 317
Query: 581 IIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKI 638
I+ E NE + F+I +I L+ N S+ AILYR + F+ A +I
Sbjct: 318 ILCELDNEREEAEFVIQEIISLKERENR-----SFRDFAILYRTNAQSRAFEEALMRVRI 372
Query: 639 PFNIHG-VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKI 697
P+ + G + FY +K ++ IIA LR + DD ++R+ + ++ I+ ++
Sbjct: 373 PYKVVGALRFYDRKEIKDIIAYLRILVNPYDDISFKRIIN---VPKRGIGAATIEALEAT 429
Query: 698 STIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVA 757
+ + S A D AK+S K S L LE+I K + ++S VI
Sbjct: 430 ALEKDTSLFFAIDD---AKVSQRAKNSLLEFKE---FILELIDK--KDTMTVSEVIN--- 478
Query: 758 NMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQD 817
Y+LE+ G + + + + + ++ +FL+ AA E +D
Sbjct: 479 ------YILEE-------TGYVEELEKEESEQAEGRIENLKEFLN----AAYEFEESSED 521
Query: 818 KKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
K L+AF+ I+ + + SV L T+H +KGLE+ +VF+ E
Sbjct: 522 KS-----LEAFLAGITLVSDIDLAGEIGE---SVVLMTLHSAKGLEFPVVFMVGMEEGVF 573
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM---MDANWQLLQPSRFLKE 934
P F + YV +TR+++KL++ Y + Q SRF+ E
Sbjct: 574 PSFKSFTDEYELEEERRL-----CYVGITRSKEKLYMTYARRRNLYGKSQYSSYSRFISE 628
Query: 935 IPHHL 939
IP
Sbjct: 629 IPERF 633
>gi|375149461|ref|YP_005011902.1| UvrD/REP helicase [Niastella koreensis GR20-10]
gi|361063507|gb|AEW02499.1| UvrD/REP helicase [Niastella koreensis GR20-10]
Length = 783
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 214/739 (28%), Positives = 341/739 (46%), Gaps = 138/739 (18%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
YLQ LN QQ EA PL+IVAG GSGK G+ NILA+TFT
Sbjct: 4 YLQGLNAQQREAVI-HRDGPLMIVAGAGSGKTKVLTTRIAHLMATGVDAFNILALTFTNK 62
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++RI ++G A+ L I TFHS ++ R A + + F IY +
Sbjct: 63 AAKEMKERIEKVLGNNEARNLYIGTFHSVFARILRGEAHNIGYPNNFTIYDTDDTKS--- 119
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
V+K + ++ D H Y A++ YN+
Sbjct: 120 ------------VIKTVVNELNLDDKH--YKPAAV------------------YNR---- 143
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGA---AILENYNGILRSC---NALDYHDLISCSV 459
+ AK + PAE+ +++ A AI + Y+ ++ C A+D+ DL+
Sbjct: 144 -ISGAKNALVGPAEYANDYALQQEDMRANRPAIAQIYDAYVKRCFKNGAMDFDDLLLKFY 202
Query: 460 KLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFN 518
+LL PE +YQ +K I+VDE+QDT+ QY ++++L A H + +VGDD QSI+SF
Sbjct: 203 ELLRNVPESLSKYQRKFKYILVDEYQDTNPAQYEVIKLLGAMHENVCVVGDDAQSIYSFR 262
Query: 519 GADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQL-KNVQTDNSHG 577
GA I F+KD+ + K ++L +NYRS++ I++ A+ +I++N + Q+ KN+ TD G
Sbjct: 263 GATIENILQFQKDYEDAKVVKLEQNYRSSKSILDVANEVIKNN--KGQIPKNLWTDKGEG 320
Query: 578 SKIIIKECHNEDAQCAFIIDKILE-----HASNGPASICSYGSIAILYRRQVSGKVFQTA 632
KI + + ++ + ++ D I E H +N AILYR + F+ +
Sbjct: 321 EKIKLVRLNTDNDEGKYVADTIQEQKLRNHYNNR--------DFAILYRTNAQSRAFEES 372
Query: 633 FRERKIPFNIHG-VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI 691
R IP+ + G ++FY +K ++ +A LR + D+ E KR+I
Sbjct: 373 LRRMSIPYTMFGGLSFYARKEIKDYVAYLRVIVNPRDE---------------EALKRII 417
Query: 692 DH----IDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREP 747
++ I K +TI K ++ +I ++ + + G TLE I V
Sbjct: 418 NYPVRGIGK-TTIDKTVLMANQNNITMWEVLERAREAGFKAG-----TLEAIENFVVMIK 471
Query: 748 SISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQY-----LLADVTDFLS 802
S ++++ S ++ +Q + V K L D V +Y LL + ++
Sbjct: 472 SFASMLQSKNAYDVAVHVGKQTSFV-----KELFNDKSTEGVQRYENVQELLNSIKEWTE 526
Query: 803 TKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGL 862
+ T EEG V G Y+ + ++ N ++V L +IH +KGL
Sbjct: 527 SPDT---EEGEVTDKGLGA---------YLQQITLLTDADEKDPNADTVKLMSIHAAKGL 574
Query: 863 EWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDAN 922
E+ VF A E P +G +EEERRL YV +TRA+++L+I Y
Sbjct: 575 EFSCVFAAGLEEQLFP-----SGLAINTREELEEERRLFYVVITRAKERLWISYANTRYR 629
Query: 923 WQLL---QPSRFLKEIPHH 938
+ L +PSRFL E+P H
Sbjct: 630 FGNLVQNEPSRFLDELPEH 648
>gi|392396646|ref|YP_006433247.1| DNA/RNA helicase [Flexibacter litoralis DSM 6794]
gi|390527724|gb|AFM03454.1| DNA/RNA helicase, superfamily I [Flexibacter litoralis DSM 6794]
Length = 760
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 203/728 (27%), Positives = 340/728 (46%), Gaps = 114/728 (15%)
Query: 244 YLQSLNDQQ------LEAACGDMSTPLLIVAGPGSGK--------------GISPSNILA 283
+++ LN++Q E AC L++AG GSGK G SP ILA
Sbjct: 4 FIKDLNEKQQLGVLKTEGAC-------LLIAGAGSGKTRVLTYRIANLLENGTSPWQILA 56
Query: 284 MTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQ 343
+TFT AA EMR+RI ++VG T ++L + TFHS ++ R ++L S F IY
Sbjct: 57 LTFTNKAAKEMRERIENLVG-TTGRDLWMGTFHSMFARILRFDGDRLGYRSGFSIYDTDD 115
Query: 344 QRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFK--LC 401
+ ++K I +M D + A +F +SS K L
Sbjct: 116 SK---------------TLIKNIVKEMGIDDKIY---------QAAGMFNRISSLKNSLI 151
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
++ ++ +++ + F KI E A + NA+D+ DL+ + L
Sbjct: 152 SPQEYNQNAEFLSEDAMAKRPHFGKIYQEYAARCFK--------ANAMDFDDLLYQTFVL 203
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-RITIVGDDDQSIFSFNGA 520
++ +YQ +K I++DEFQDT+ QY +++ LA+ N I +VGDD QSI++F GA
Sbjct: 204 FRDHKDILHKYQHRFKYILIDEFQDTNIAQYKIIKKLAAVNLNICVVGDDAQSIYAFRGA 263
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
DI +F +D+ + + I+L +NYRST+ IVEAA+ +I++N + KNV T+N G KI
Sbjct: 264 DIRNILNFERDYPDLEIIKLEQNYRSTKTIVEAANKIIKNNKNQIP-KNVWTENIAGEKI 322
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
+ ++ + I E + A + + AILYR + + A R I +
Sbjct: 323 ELVRATSDQEEGRITAGNIFETRAQKNAKLNDF---AILYRTNAQSRTMEEALRRLNIKY 379
Query: 641 N-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIST 699
I G++FY++K ++ ++A R + D+G RR KR I + +T
Sbjct: 380 RIIGGLSFYQRKEIKDLLAYFRLAVNPEDEGALRRAIN--------NPKRGIGN----TT 427
Query: 700 IRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANM 759
+ K S +I +KI + L +GR ++E +L + + + +
Sbjct: 428 VLKVFLASRENNIPLSKII-RHASAYLGKGR-AGTSVEKFGELAK---AFQIMASENDAF 482
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQY-----LLADVTDFLSTKFTAAKEEGNV 814
KY+ + +V K L +D L +Y LL +F+ K + A E
Sbjct: 483 TAAKYIAQHSGIV-----KALFDDETLEGRARYENIQELLNATQEFVQNKISEATTE--- 534
Query: 815 DQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
+ +++ + +S + Q ++E++VT+ TIH +KGLE++ V++ E
Sbjct: 535 --EPDTSLSLFLQEVALLSSVD------QASEDEDAVTMMTIHAAKGLEFEYVYLVGMEE 586
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD---ANWQLLQPSRF 931
P + + +EEERRL YVA+TRA+++L + Y + ++ +PSRF
Sbjct: 587 ELFP-----SSRMITSQQDLEEERRLFYVAVTRAKERLTLSYALQRYRYGSFNSCEPSRF 641
Query: 932 LKEIPHHL 939
L EI L
Sbjct: 642 LFEIDQEL 649
>gi|424833414|ref|ZP_18258139.1| ATP-dependent DNA helicase PcrA [Clostridium sporogenes PA 3679]
gi|365979402|gb|EHN15464.1| ATP-dependent DNA helicase PcrA [Clostridium sporogenes PA 3679]
Length = 738
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 206/699 (29%), Positives = 335/699 (47%), Gaps = 128/699 (18%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EAA + PLLI+AG GSGK I PS ILA+TFT AA
Sbjct: 7 LNKEQYEAATI-IDGPLLILAGAGSGKTRVLTYRIAHMIENLNIYPSKILAITFTNKAAG 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++RI S+VG + + +STFHS +++ R +KL F IY Q+ + + +
Sbjct: 66 EMKERIKSLVGDV-VEGMWVSTFHSSCVRILRREIDKLGYDKNFTIYDTYDQKTLVKQCM 124
Query: 353 RLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
L N+K + + I + + + S FK + +D
Sbjct: 125 EELNINDKDITDREIINTISSQKDNL---------------ISPKEFKKFSSGNYRKD-- 167
Query: 412 DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQE 471
KI D A L Y L++ NALD+ DLI +V+L T E Q
Sbjct: 168 --------------KIAD---AYTL--YQKKLKTNNALDFDDLIYKTVELFKTNEEALQF 208
Query: 472 YQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRK 530
YQ +K I+VDE+QDT+ QY L+++LAS H I +VGDDDQ I+ + GADIS +F K
Sbjct: 209 YQRKFKYIMVDEYQDTNKSQYELVKLLASVHRNICVVGDDDQCIYEWRGADISNILNFEK 268
Query: 531 DFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDA 590
D+ K I+L +NYRS I+ AA+ +I++N +R K ++T+N +G+KI + +++
Sbjct: 269 DYKEAKVIKLEQNYRSKGNILNAANEVIKNNSQRKN-KVLRTENENGNKIKVFRAYSDID 327
Query: 591 QCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
+ FI I KI++ + S+ A+LYR ++F+ F + IP+ I G+
Sbjct: 328 EAKFIASEIKKIIKDSDK------SFNDFAVLYRTNAQSRIFEDIFMKGDIPYRLIGGLK 381
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFI 706
FY +K ++ ++A L+ DD RR+ KR I +T++K
Sbjct: 382 FYDRKEIKDLMAYLKLINNPLDDISLRRIINV--------PKRSIGD----ATVKKVQEF 429
Query: 707 SAACD------IFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREP--SISAVITSVAN 758
+ D + A T + +T +K + +I+ +R++ S+SA+I +
Sbjct: 430 ANEMDECMYSVLLDADQILTLSQRSITSIKKF---VSIINSFIRKKDDISVSALIKEI-- 484
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSV--LQYLLADVTDFLSTKFTAAKEEGNVDQ 816
+ YL E + + D D+ V L+ L++ +DF E + D+
Sbjct: 485 LEDTGYLKELKNSKNPD---------DVSRVENLKELVSAASDF---------ERESEDK 526
Query: 817 DKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANET 875
L AF++ ++ + +++ +N +SV + T+H +KGLE+ +VF+
Sbjct: 527 S-------LGAFLEKVALVTDIDNY----DENSDSVAMMTVHSAKGLEFPVVFMVGMENG 575
Query: 876 EIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI 914
P + +EE RRL YVA+TRA+++L+I
Sbjct: 576 IFPGTQSLSDP-----KEMEESRRLCYVAITRAKEQLYI 609
>gi|90023404|ref|YP_529231.1| DNA-dependent helicase II [Saccharophagus degradans 2-40]
gi|89953004|gb|ABD83019.1| ATP-dependent DNA helicase UvrD [Saccharophagus degradans 2-40]
Length = 724
Score = 227 bits (578), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 201/731 (27%), Positives = 327/731 (44%), Gaps = 120/731 (16%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTF 286
S L LN+ Q EA + +L++AG GSGK G+SP I+A+TF
Sbjct: 4 SYLLDGLNEPQREAVSAPLGN-ILVLAGAGSGKTRVLVHRIAWHIQVEGLSPHQIMAVTF 62
Query: 287 TTAAASEMRDRIGSIVGK----ATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHG 342
T AA EMR R+ I+G+ + + + + TFH + +L ++H ++ F I
Sbjct: 63 TNKAAREMRSRLDEIMGERLGPSGVRSMWVGTFHGIAHRLLKAHWQEAGLPQNFQI---- 118
Query: 343 QQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQ 402
L ++++ VVKR+ ++ D F + +A F+
Sbjct: 119 -----------LDSDDQLRVVKRVYQELQIDDSRFPFKQAQWFI---------------- 151
Query: 403 YNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSC---NALDYHDLISCSV 459
+ K G P ++ D A + + Y +C +D+ +L+ S
Sbjct: 152 ---------NGQKDEGIRPQYIQEGHDPFLATMKQVYAAYEEACARAGVVDFAELLLRSH 202
Query: 460 KLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFN 518
+L P + + YQ+ ++A++VDEFQDT+++QY+ L++LA IT VGDDDQSI+ +
Sbjct: 203 ELWLKNPTLLKHYQNRFRALLVDEFQDTNSVQYAWLRVLAGPEGCITAVGDDDQSIYGWR 262
Query: 519 GADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGS 578
GA I F DF N IRL +NYRST I+EAA+++I +N +R K + T + G
Sbjct: 263 GAKIENIQQFEVDFKNVNTIRLEQNYRSTGTILEAANAVITNNSQRLG-KKLWTSGADGE 321
Query: 579 KIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKI 638
I + NE + +I+++I E +G A +A+LYR +V + AF +
Sbjct: 322 LIDLYSAFNEQDEARYIVERISEWVKDGGAR----EDVAVLYRSNAQSRVLEEAFIREGM 377
Query: 639 PFNIHGVA-FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH--ID 695
+ I+G FY + ++ +A R L DD + RV R I +D
Sbjct: 378 AYRIYGGQRFYERLEIKNALAYGRLILNRQDDAAFERVINT--------PTRGIGSKTVD 429
Query: 696 KISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITS 755
+ + + S + GA +G F + L + + KL+ E SI+A
Sbjct: 430 TLRLMAREQGFSMYEAMLGAIRNGVFT----ARATNALKAFDELLKLL--EASIAAA--- 480
Query: 756 VANMVPQKY--LLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
+P + ++ + + DF + L L+ F N
Sbjct: 481 ---RLPDQMDIIINESGLKDFHAKEKGERGQARLENLNELVVACGAF------------N 525
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+ D+ I+ L F+D + + Q + E++V + T+H +KGLE+ +VF+
Sbjct: 526 AEDDE---ISPLAEFLDRAALDAGDQ---QADEYEDAVQMMTLHSAKGLEFPLVFLVGME 579
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSR 930
E P H+ + E +EEERRL YV +TRA KKL + Y M N SR
Sbjct: 580 ENLFP--HKMS---MEDAGGLEEERRLAYVGITRAMKKLVLTYAESRRMYGNENFNAISR 634
Query: 931 FLKEIPHHLRE 941
F++EIP L E
Sbjct: 635 FVREIPKQLVE 645
>gi|336064337|ref|YP_004559196.1| DNA helicase II / ATP-dependent DNA helicase [Streptococcus
pasteurianus ATCC 43144]
gi|334282537|dbj|BAK30110.1| DNA helicase II / ATP-dependent DNA helicase [Streptococcus
pasteurianus ATCC 43144]
Length = 771
Score = 227 bits (578), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 211/733 (28%), Positives = 337/733 (45%), Gaps = 122/733 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDKQAEA-VKTTDGPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R ++ ATA L I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMRERAMAL-NPATADTL-IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+L+N L D RA L + S + L +E
Sbjct: 121 --KRILKN-------------LNLDPKKWNERAILGTI------SNAKNDLLDEVAYENQ 159
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D+ +I A + Y LR A+D+ DLI +++L P+V
Sbjct: 160 AGDMYT--------------QIVAKCYKAYQEELRRSEAMDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 AYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+++I +N R + K + T N+ G +I+ +E
Sbjct: 266 EKDYPEAKVVLLEENYRSTKKILQAANAVINNNRNR-RPKKLWTQNADGEQIVYYRARDE 324
Query: 589 DAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHG 644
+ F+ ID I+ ++ A+LYR + + A + IP+ + G
Sbjct: 325 REEAVFVASTIDNIVREEGK------NFKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGG 378
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTI 700
FY +K +R +I+ L D+ Y R+ E K+ V ++ I + +
Sbjct: 379 TKFYSRKEIRDVISYLNVIANTADNISYERIV-------NEPKRGVGPGTLEKIRDFANM 431
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVR-REPSISAVITSVANM 759
+ S + A+ +I +SG +G+ ++ + L++ R+ +T +
Sbjct: 432 QNMSLLDASANIM---LSG-------VKGKAAQAVWDLANLLMKFRDDLDQMTVTELVEA 481
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
V L++ +D L N L S Q + ++ +FL+ + + +D+
Sbjct: 482 V-----LDKTGYLD-----ALRVQNTLES--QARIENIEEFLTVTKNFDDNQEDAPEDES 529
Query: 820 GCINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIHQSKGLEWDIVFVAKANETEIP 878
G I+ L F++ ++ T D E + VTL T+H +KGLE+ IVF+ E P
Sbjct: 530 G-IDKLSRFLNDLALIAD----TDDGDAETAEVTLMTLHAAKGLEFPIVFLIGMEEGVFP 584
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRF 931
L E +EEERRL YV +TRA + LF+ +AN + L +PSRF
Sbjct: 585 LSR-----AAEDQDELEEERRLAYVGITRAEQLLFV----TNANTRTLFGKTSYNRPSRF 635
Query: 932 LKEIPHHLREVQA 944
++EI L + Q
Sbjct: 636 IREIDDELLQYQG 648
>gi|302869847|ref|YP_003838484.1| ATP-dependent DNA helicase PcrA [Micromonospora aurantiaca ATCC
27029]
gi|302572706|gb|ADL48908.1| ATP-dependent DNA helicase PcrA [Micromonospora aurantiaca ATCC
27029]
Length = 803
Score = 227 bits (578), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 205/727 (28%), Positives = 332/727 (45%), Gaps = 110/727 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN Q +A +PLLIVAG GSGK + P I+A+TFT
Sbjct: 41 LDGLNGPQRDAVT-HAGSPLLIVAGAGSGKTRVLTNRIAYLLAARDVHPGEIIAITFTNK 99
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ ++VG A+ + +STFHS +++ R+ E S F IY RR +
Sbjct: 100 AAGEMKERVAALVGP-RARLMWVSTFHSACVRILRAEHEHAGLKSTFSIYDADDSRRLMQ 158
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R L+ L KR L Q + + +
Sbjct: 159 MVARELD----LDPKRYPARGLA----------------------------AQVSNLKNE 186
Query: 410 GMDVAKASG--KTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+D + +G K P E R + A Y LR +ALD+ DLI +V LL + P
Sbjct: 187 LVDPEEFAGRAKGPNE-RAL-----AEAYTLYQRRLREAHALDFDDLIMTTVHLLQSHPH 240
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR------ITIVGDDDQSIFSFNGAD 521
V + Y+ ++ ++VDE+QDT+ QY L++ L S + +VGD DQSI++F GA
Sbjct: 241 VAESYRRRFRHVLVDEYQDTNHAQYVLIKELVSGTEGIPPAELCVVGDADQSIYAFRGAT 300
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII 581
I F +DF + + I L +NYRST+ I+ AA+++I N R + K + +D G +I+
Sbjct: 301 IRNILEFERDFTDARTILLEQNYRSTQTILNAANAVIDRNTSR-KPKRLWSDAGSGEQIV 359
Query: 582 IKECHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKI 638
E A+ ++ ID++++ P G +A+ YR +VF+ F +
Sbjct: 360 GYVADTEHAEADWVAREIDRLVDDGETRP------GDVAVFYRTNAMSRVFEEVFIRVGL 413
Query: 639 PFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKI 697
P+ + GV FY +K VR +A LR + D RRV + +R ++ +
Sbjct: 414 PYKVVGGVRFYERKEVRDALAYLRAVVNDDDTVSLRRVLNT---PRRGIGERAEACVEAL 470
Query: 698 STIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVA 757
S + SF +A A T + + + +L ++ E + AV+T
Sbjct: 471 SARDRISFGAALRRAKDAPGISTRAANGIAEFVALLDAARELAGTGTPEEVLEAVLTR-- 528
Query: 758 NMVPQKYLLEQRAVVDF-DGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQ 816
YL E +D D G++ N LQ L++ ++ ++T E D
Sbjct: 529 ----SGYLAELEESLDPQDAGRVDN--------LQELVS-----VAREYTERIEALGADD 571
Query: 817 DKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANET 875
++ L F++ ++ + + + D++ VTL T+H +KGLE+ +VF+ +
Sbjct: 572 ERA----TLAGFLEQVALVADADQIPSDDPDHQGVVTLMTLHTAKGLEFPVVFLTGLEDG 627
Query: 876 EIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSRFL 932
P + G E +EEERRL YV +TRAR++L++ + + W PSRFL
Sbjct: 628 VFPHLRSL-GDTRE----LEEERRLAYVGITRARQRLYLSRAVTRSAWGAPAYNPPSRFL 682
Query: 933 KEIPHHL 939
+E+P L
Sbjct: 683 EELPPEL 689
>gi|298253336|ref|ZP_06977128.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis 5-1]
gi|297532731|gb|EFH71617.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis 5-1]
Length = 978
Score = 226 bits (577), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 210/734 (28%), Positives = 335/734 (45%), Gaps = 101/734 (13%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFT 287
K L LN QQ +A D LLI AG GSGK G PS ILA+TFT
Sbjct: 117 KLLDGLNPQQSQAVQYD-GPALLIGAGAGSGKTRVLTRRIAWILSQKGAWPSQILAITFT 175
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA+EMR+R+ ++G + A + +STFHS +++ R + + S F IY R
Sbjct: 176 NKAAAEMRERLSKLIG-SEANTMWVSTFHSACVKILRRSGQYIGLKSGFSIYDTSDCERL 234
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
V+++ E + +KR + + G + SL L + +K
Sbjct: 235 ----VKIIATELNVDIKRFTPRSIL--GKISDCKNSLITWREQLDMYANDYKPGVA---- 284
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
G +A A G + A + A I Y L NA+D+ DLI +V+L+ PE
Sbjct: 285 --GQQIAHA-GNSEAVY--------ATIYAEYQHRLSQANAVDFDDLIMRTVQLMREVPE 333
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN----------------RITIVGDDD 511
Q Y+ ++ I++DE+QDT+ QY L++ LA + IT+VGD D
Sbjct: 334 AAQYYRRKFRYILIDEYQDTNHAQYELIRELAGVDVKQNSANPSQQNNTPASITVVGDSD 393
Query: 512 QSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQ 571
QSI++F GADI F KDF N I L +NYRST+ I++AA+++I HN R + K +
Sbjct: 394 QSIYAFRGADIRNIQDFEKDFPNATTIMLEQNYRSTQTILDAANAVISHNQGR-KPKKLW 452
Query: 572 TDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQT 631
T G+ I + + A++ +I A G + Y +AI+YR + +
Sbjct: 453 TALGKGTPITGYAADSAQQEAAWVAQEIARLA--GEEGVA-YSDMAIMYRANAQSRSLED 509
Query: 632 AFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV 690
A + +P+ + G FY ++ V+ +A L++ DD RR+ + ++ R
Sbjct: 510 ALVKAGLPYQLVGGTKFYERREVKDALAYLQSMANPDDDVNMRRILN---VPKRGLGARA 566
Query: 691 IDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSIS 750
+ + + SF A + + T ++L + R+++ L I+ + + S
Sbjct: 567 EALLTLYAQTQGVSFWQALEHLESIEGMPTRTATKLKEFRELMHNL--ITCMQNNDSKPS 624
Query: 751 AVITSVANMVPQKYLLE--QRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAA 808
VI S+ N LLE QR+ D ++ D S LQ + A+
Sbjct: 625 KVIDSILN---DSGLLEDLQRSEDPQDAARV-----DNLSQLQSVAAEY----------- 665
Query: 809 KEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVF 868
E+ D G + D ++ + D VTL T+H +KGLE+ +VF
Sbjct: 666 -EQNTPDASVAGFLETTALVAD------SDQLPDENEDT-GKVTLMTLHTAKGLEYPVVF 717
Query: 869 VAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QL 925
+ + P + A+ + G + EERRL YV +TRA+++L++ + A W Q
Sbjct: 718 LTGMEQGTFP----HSRALEDDG-ELCEERRLAYVGITRAKQRLYVTRAAVRAQWGQAQD 772
Query: 926 LQPSRFLKEIPHHL 939
+ PS+FL EIP +L
Sbjct: 773 MLPSQFLDEIPDNL 786
>gi|440783418|ref|ZP_20961136.1| ATP-dependent superfamily I DNA helicase, PCRA [Clostridium
pasteurianum DSM 525]
gi|440219558|gb|ELP58770.1| ATP-dependent superfamily I DNA helicase, PCRA [Clostridium
pasteurianum DSM 525]
Length = 763
Score = 226 bits (577), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 208/727 (28%), Positives = 343/727 (47%), Gaps = 127/727 (17%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EAA + P+L++AG GSGK + PS ILA+TFT AA
Sbjct: 7 LNKEQYEAATA-VDGPVLVLAGAGSGKTRVLTYRIANMIENLNVYPSQILAITFTNKAAQ 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ ++VG + A + +STFHS +++ R +K+ F IY Q+ I + +
Sbjct: 66 EMKERVRALVG-SEADNMWVSTFHSTCVRILRREIDKIGYNKNFTIYDSADQKTLINQCI 124
Query: 353 RLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
+ + N+K + K I + + G + +L S +K N F+ + +
Sbjct: 125 KEVGINDKDITDKEIISKI-------GAQKDNLV--------SAQEYKRKNENNFKLNRI 169
Query: 412 DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQE 471
A + Y L+ NALD+ DLI +V+L +V Q
Sbjct: 170 ---------------------AEVYLLYQKKLKENNALDFDDLIFKTVELFKKQEDVLQF 208
Query: 472 YQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRK 530
YQ ++ I++DE+QDT+ QY L ++LA H I +VGDDDQ I+ + GADI F K
Sbjct: 209 YQRKFRYIMIDEYQDTNKAQYELARLLAKEHKNICVVGDDDQCIYGWRGADIRNILDFEK 268
Query: 531 DFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDA 590
D+ + K I+L NYRS I++AA+ +I++N K ++T N GSKI + +++
Sbjct: 269 DYRDAKVIKLEENYRSKANILKAANGVIKNNPHE-HFKLLRTRNEDGSKIKLYRSYSDME 327
Query: 591 QCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFYR 649
+ F+ ++I + +G +Y A+LYR ++F+ F +R IP+ I G+ FY
Sbjct: 328 EVEFVANEIKKAMDSGDR---TYKDFAVLYRTNAQSRLFEDIFMKRHIPYRIIGGLKFYD 384
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIST-IRKCSFISA 708
+K ++ I+A L+ D+ +R+ + ++ +D I+K + I +C + S
Sbjct: 385 RKEIKDIMAYLKLISNPLDNISLKRIIN---VPKRGIGATTVDKIEKFANEIEECLY-SC 440
Query: 709 ACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQ 768
DI I G R+ + + + +I+ V R+ I V T + ++ Q L++
Sbjct: 441 LLDI--QNIPGLTARNVSSINK----FISIINSFVIRKDEIK-VSTLIEELLGQTGYLQE 493
Query: 769 RAVVDFDGGKLLNEDNDLRSV-----LQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
L + NDL+ LQ L++ DF N +DK
Sbjct: 494 -----------LKKSNDLQDETRIENLQELVSAAVDF-----------ENNSEDKS---- 527
Query: 824 VLKAFIDYISERETEHFRTQRHDNE-NSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
L AF+ E+ +D E +SV + T+H +KGLE+ +VF+ P
Sbjct: 528 -LSAFL----EKTALVADVDNYDEESDSVVMMTVHSAKGLEFPVVFMVGMENGIFP---- 578
Query: 883 FNGAVN-EKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKE 934
GA + T +EE RRL YV +TRA+++L+ M A + + S F+ E
Sbjct: 579 --GAASLSDFTEMEESRRLAYVGITRAKEELY----MTSAQTRKIFGRTVGYAESDFIAE 632
Query: 935 IPHHLRE 941
IP L+E
Sbjct: 633 IPKELKE 639
>gi|381208972|ref|ZP_09916043.1| ATP-dependent DNA helicase [Lentibacillus sp. Grbi]
Length = 733
Score = 226 bits (577), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 211/735 (28%), Positives = 326/735 (44%), Gaps = 140/735 (19%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN +Q EA PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 LNGLNKEQQEA-VKHTEGPLLIMAGAGSGKTRVLTHRIAYLLGEKDVSPRNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG ++ +STFHS +++ R +++ F I G Q
Sbjct: 64 AAREMKERVNKLVG-TEGGQIWVSTFHSMCVRILRRDIDRIGYNQNFTILDSGDQ----- 117
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ V+K+I D+ F RA L ++
Sbjct: 118 ----------LSVIKQILKDLNIDPKKFD-PRAMLGQISG-------------------- 146
Query: 410 GMDVAKASGKTPAEFRK-IGDEIG---AAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
AK TP E+ K +GD + + E Y L+ ALD+ DLI ++ L
Sbjct: 147 ----AKNELITPEEYSKNVGDFFQRQVSQVYERYQKTLQKNQALDFDDLIMQTIHLFKRV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISG 524
PEV + YQ ++ I VDE+QDT+ QY L++ LAS + + +VGD DQSI+ + GADI+
Sbjct: 203 PEVLEHYQRRFQYIHVDEYQDTNHAQYYLVKQLASRYQNLCVVGDSDQSIYRWRGADIAN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF KD+ + + I L +NYRST+ I+ AA+ +IQ+N R + KN+ T+N G KI +
Sbjct: 263 ILSFEKDYPSARVIFLEQNYRSTKSILAAANEVIQNNSGR-KPKNLWTENDDGRKIHYFQ 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + F+ DKI E G S IAILYR + + + I + +
Sbjct: 322 GATEQEEALFVTDKIQELTGEG----FSPNDIAILYRTNAQSRAIEDTLIKSDIGYQMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRV---------------FKAFLLLEKEEKK 688
G FY +K ++ + + LR DD + RV +A+
Sbjct: 378 GTKFYDRKEIKDLTSYLRLITNPDDDISFERVVNVPKRGIGKTSVEKLRAYAAEHAISFN 437
Query: 689 RVIDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPS 748
+ + +D I +K + A FG I L+Q ++ L +M+ ++ R
Sbjct: 438 QAVKEVDFIGVTKKA---ANALAEFGNLIQS------LSQQQEFLTATDMVEAILER--- 485
Query: 749 ISAVITSVANMVPQKYLLE-QRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTA 807
T M+ + LE Q + + + K + +D + + + L+A +TD
Sbjct: 486 -----TGYEEMLKNERSLESQSRLENLEEFKTVTQDFEEGAEDKTLIAFLTDL------- 533
Query: 808 AKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIV 867
L A ID + + E DNE VTL T+H +KGLE+ ++
Sbjct: 534 ----------------ALVADIDRVDQEEM--------DNEPKVTLMTLHAAKGLEFPVI 569
Query: 868 FVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQL-- 925
F+ E P +EEERRL YV +TRA ++L++ + M +
Sbjct: 570 FLVGMEENVFPHSRSMF-----DDEEMEEERRLAYVGITRAEQQLYLTHAKMRTIYGRTN 624
Query: 926 LQP-SRFLKEIPHHL 939
+ P SRF+ EIP L
Sbjct: 625 MNPISRFINEIPEDL 639
>gi|433443264|ref|ZP_20408701.1| ATP-dependent DNA helicase PcrA [Anoxybacillus flavithermus
TNO-09.006]
gi|432002225|gb|ELK23080.1| ATP-dependent DNA helicase PcrA [Anoxybacillus flavithermus
TNO-09.006]
Length = 694
Score = 226 bits (577), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 220/723 (30%), Positives = 344/723 (47%), Gaps = 110/723 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN++Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 9 LDGLNEKQKEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKDVAPWNILAITFTNK 67
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ IVGK A+++ ISTFHS +++ R +++ + F I
Sbjct: 68 AAREMKERVERIVGK-QAEDIWISTFHSMCVRILRRDIDRIGIHANFSI----------- 115
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
L +++ V+K I D + RA L ++SS K D
Sbjct: 116 ----LDPTDQLSVLKHILKDRNIDPKKYD-PRA--------LLGAISSAK--------ND 154
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ K + + + K+ A + + Y L +ALD+ DLI +++L PEV
Sbjct: 155 LVTPEKYAEQAANPYEKLV----AEVYQEYQKRLLRNHALDFDDLIMTTIQLFQRVPEVL 210
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ ++ I VDE+QDT+ QY L+ +LA + +VGD DQSI+ + GADIS SF
Sbjct: 211 EYYQRKFQYIHVDEYQDTNRSQYLLVNMLAKRFQNLCVVGDSDQSIYRWRGADISNILSF 270
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K I L +NYRST+ I++AA+++I+HN +R + K + T+NS G ++ E E
Sbjct: 271 EKDYPNAKVILLEQNYRSTKRILQAANAVIEHNTQR-KPKKLWTENSEGQALVYYEAMTE 329
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVAF 647
+ F++ KI E+ +G +Y A+LYR +V + + IP+ I G+ F
Sbjct: 330 VDEAQFVVGKIKEYVDDGKR---TYKDFAVLYRTNAQSRVLEEMLLKANIPYKIVGGLKF 386
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y +K ++ I+A LR DD R+ + ++ ID I ++ + S
Sbjct: 387 YDRKEIKDILAYLRLIANPNDDISLTRIIN---VPKRGIGASTIDKIAAYASSQGISMFD 443
Query: 708 AACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLE 767
A I IS + L Q R+ + + + SV +V
Sbjct: 444 ALGSIEEMGISARIA-APLVQFREQIHHWSQMQHYL-----------SVTELVED----- 486
Query: 768 QRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN--V 824
V+D G + +L E+ L + L ++ +FLS T E+ N D+ +
Sbjct: 487 ---VLDRSGYRDMLREEKTLEA--HSRLENIDEFLSV--TQHFEQVNEDKSLVAFLTDLA 539
Query: 825 LKAFIDYI---SERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
L A ID + SE +T ++V L T+H +KGLE+ +VF+ E P
Sbjct: 540 LVADIDQLDNNSEGQT----------NDAVVLMTLHSAKGLEFPVVFLVGLEEGIFP--- 586
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD---ANWQLLQPSRFLKEIPHH 938
N ++N++ +EEERRL YV +TRA ++LF+ M + PSRF+ EIP
Sbjct: 587 -HNRSLNDE-DEMEEERRLAYVGITRAEEELFLTRAHMRTLFGQTHVNAPSRFIDEIPEE 644
Query: 939 LRE 941
L E
Sbjct: 645 LIE 647
>gi|325269817|ref|ZP_08136427.1| ATP-dependent DNA helicase PcrA [Prevotella multiformis DSM 16608]
gi|324987790|gb|EGC19763.1| ATP-dependent DNA helicase PcrA [Prevotella multiformis DSM 16608]
Length = 843
Score = 226 bits (577), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 216/739 (29%), Positives = 345/739 (46%), Gaps = 101/739 (13%)
Query: 245 LQSLNDQQLEAA--CGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTT 288
L +LN+ Q +A C + P L++AG GSGK G+ P NILA+TFT
Sbjct: 11 LSALNESQRKAVEYC---AGPSLVIAGAGSGKTRVLTYKIAYLLEKGLKPWNILALTFTN 67
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA EM++RI I A+ L + TFHS ++ RS E + F IY R I
Sbjct: 68 KAAKEMKERIAQITTAGEARRLYMGTFHSIFARILRSEGELIGFGHNFTIYDETDSRSLI 127
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
+VK + D T Y A++ F SM+ +L +++
Sbjct: 128 KS-----------IVKALGLDEKT------YKPAAVHN-----FISMAKNRLITASEYAE 165
Query: 409 DGMDVAKAS-GKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
D + + + PA ++ I + Y R NA+D+ D++ + L +
Sbjct: 166 DRAALNRDRIVRMPAVYQ---------IYKAYEARCRQANAMDFDDILLYTYLLFRDHVD 216
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFD 526
V ++Y ++ I+VDE+QDT+ Q S++ LA +H R+ +VGDD QSI+SF GA+I
Sbjct: 217 VRKKYGQLFEYILVDEYQDTNFAQVSIISQLANTHRRVCVVGDDYQSIYSFRGANIDNIL 276
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
FR+ F + + +L RNYRST+ IV+AA+SL++HN ++ K V ++ G K++ K C+
Sbjct: 277 DFREKFTDARLFKLERNYRSTQLIVQAANSLMKHNERQIP-KEVYSEEGEGHKVLYKPCY 335
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
+ D + A ++ L C YGS AILYR + F+ FR++ IP+ I G+
Sbjct: 336 S-DREEAMVVAGELRRIKRDER--CDYGSFAILYRTNAQSRPFEDEFRKQGIPYKIIGGL 392
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSF 705
+FY++K ++ IIA R D+ +RR+ + + I + S
Sbjct: 393 SFYQRKEIKDIIAYFRLVANPDDEEAFRRIIN---YPARGIGSTTVQKIVDCAQHHAVSL 449
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYL 765
+ G ++ + LT K+L +IS +++ A +T + + +
Sbjct: 450 WETILNPIGYGLN--VNKGTLT---KLLAFKTLISGFIKK-----AALTDAYELGSE--I 497
Query: 766 LEQRAV-VDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINV 824
+E+ + D G+ ED R L+ ++ + DF+ +EEG + NV
Sbjct: 498 IEESGIGADIRSGR-DPEDLARRENLEEFMSAMQDFVDI----GREEGREE-------NV 545
Query: 825 LKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFN 884
DY+ E ++ D+ VTL TIH +KGLE+ VFV E P +
Sbjct: 546 Y--LTDYLQEVALYTDADKKDDDTPKVTLMTIHAAKGLEFPTVFVVGLEENVFP-----S 598
Query: 885 GAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSRFLKEIPHHLRE 941
+ VEEERRLLYVA+TRA + + + +Q PSRFL +I L
Sbjct: 599 PMASGSRREVEEERRLLYVAITRAERHCILTNARNRFRYGTMQVDDPSRFLDDIDASL-- 656
Query: 942 VQAEQSVQD----QHENIP 956
+Q E + D Q + +P
Sbjct: 657 LQEENNGSDVFRTQRQKMP 675
>gi|315501309|ref|YP_004080196.1| ATP-dependent DNA helicase pcra [Micromonospora sp. L5]
gi|315407928|gb|ADU06045.1| ATP-dependent DNA helicase PcrA [Micromonospora sp. L5]
Length = 803
Score = 226 bits (577), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 205/727 (28%), Positives = 332/727 (45%), Gaps = 110/727 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN Q +A +PLLIVAG GSGK + P I+A+TFT
Sbjct: 41 LDGLNGPQRDAVT-HAGSPLLIVAGAGSGKTRVLTNRIAYLLAARDVHPGEIIAITFTNK 99
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ ++VG A+ + +STFHS +++ R+ E S F IY RR +
Sbjct: 100 AAGEMKERVAALVGP-RARLMWVSTFHSACVRILRAEHEHAGLKSTFSIYDADDSRRLMQ 158
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R L+ L KR L Q + + +
Sbjct: 159 MVARELD----LDPKRYPARGLA----------------------------AQVSNLKNE 186
Query: 410 GMDVAKASG--KTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+D + +G K P E R + A Y LR +ALD+ DLI +V LL + P
Sbjct: 187 LVDPEEFAGRAKGPNE-RAL-----AEAYTLYQRRLREAHALDFDDLIMTTVHLLQSHPH 240
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR------ITIVGDDDQSIFSFNGAD 521
V + Y+ ++ ++VDE+QDT+ QY L++ L S + +VGD DQSI++F GA
Sbjct: 241 VAESYRRRFRHVLVDEYQDTNHAQYVLIKELVSGTEGIPPAELCVVGDADQSIYAFRGAT 300
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII 581
I F +DF + + I L +NYRST+ I+ AA+++I N R + K + +D G +I+
Sbjct: 301 IRNILEFERDFTDARTILLEQNYRSTQTILNAANAVIDRNTSR-KPKRLWSDAGSGEQIV 359
Query: 582 IKECHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKI 638
E A+ ++ ID++++ P G +A+ YR +VF+ F +
Sbjct: 360 GYVADTEHAEADWVAREIDRLVDDGETRP------GDVAVFYRTNAMSRVFEEVFIRVGL 413
Query: 639 PFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKI 697
P+ + GV FY +K VR +A LR + D RRV + +R ++ +
Sbjct: 414 PYKVVGGVRFYERKEVRDALAYLRAVVNDDDTVSLRRVLNT---PRRGIGERAEACVEAL 470
Query: 698 STIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVA 757
S + SF +A A T + + + +L ++ E + AV+T
Sbjct: 471 SARDRISFGAALRRAKDAPGISTRAANGIAEFVALLDAARELAGTGTPEEVLEAVLTR-- 528
Query: 758 NMVPQKYLLEQRAVVDF-DGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQ 816
YL E +D D G++ N LQ L++ ++ ++T E D
Sbjct: 529 ----SGYLAELEESLDPQDAGRVDN--------LQELVS-----VAREYTERIEALGADD 571
Query: 817 DKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANET 875
++ L F++ ++ + + + D++ VTL T+H +KGLE+ +VF+ +
Sbjct: 572 ERA----TLAGFLEQVALVADADQIPSDDPDHQGVVTLMTLHTAKGLEFPVVFLTGLEDG 627
Query: 876 EIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSRFL 932
P + G E +EEERRL YV +TRAR++L++ + + W PSRFL
Sbjct: 628 VFPHLRSL-GDTRE----LEEERRLAYVGITRARQRLYLSRAVTRSAWGAPAYNPPSRFL 682
Query: 933 KEIPHHL 939
+E+P L
Sbjct: 683 EELPPEL 689
>gi|397676572|ref|YP_006518110.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ATCC 29191]
gi|395397261|gb|AFN56588.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ATCC 29191]
Length = 768
Score = 226 bits (577), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 216/745 (28%), Positives = 341/745 (45%), Gaps = 124/745 (16%)
Query: 226 TDTIQTIKTQNMPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKGIS-------- 277
TD++ + + P E YL LN +Q E LL++AG G+GK +
Sbjct: 2 TDSLYSSFSAETPPE-PDYLARLNPEQKEV-VRTTEGALLVLAGAGTGKTAALTARLAYL 59
Query: 278 -------PSNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKL 330
PS ILA+TFT AA EM+ R+G ++G + TFHS + ++ R HAE +
Sbjct: 60 VETLKAWPSQILAVTFTNKAAREMQMRVGDLLGSQAENMPWLGTFHSIAAKMLRRHAELV 119
Query: 331 ERTSEFLIYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAM 390
S+F+I Q +RLL+ +++ + I G +
Sbjct: 120 GLKSDFIILDTDDQ-------IRLLK--QLIQGQGIDEKQWPAKQLAGII---------- 160
Query: 391 LFFSMSSFKLCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALD 450
++++ G+ K +GK F D GAA+ Y L S NA D
Sbjct: 161 -------------DRWKNRGLTSDKIAGKEEDSF---ADGQGAALYLAYQKRLLSLNACD 204
Query: 451 YHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGD 509
+ DL+ + +L+ EV + Y D ++ I+VDE+QDT+ QY L++LA NR I VGD
Sbjct: 205 FGDLLLHMLVILTQHREVLESYHDRFRYIMVDEYQDTNQAQYLWLRLLAQKNRNICCVGD 264
Query: 510 DDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKN 569
DDQSI+S+ GA+++ F +DF K IRL NYRST I+ AAS LI HN R K
Sbjct: 265 DDQSIYSWRGAEVANILRFEEDFPGAKIIRLEHNYRSTPQILGAASGLITHNNARLG-KT 323
Query: 570 VQTDNSHGSKI-IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKV 628
+ T+ G K+ II + + D +N P + +AIL R Q +
Sbjct: 324 LWTERDQGEKVKIIGVWDGAEEARQLVADVQNLRRANIPLN-----KMAILIRAQFQSRE 378
Query: 629 FQTAFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEK 687
F+ F + +P+ I G FY + +R +A LR DD + R+ + ++
Sbjct: 379 FEDIFIAKNLPYRIIGGFRFYERAEIRDALAYLRVIAQPTDDLAFERIVN---VPKRGIG 435
Query: 688 KRVIDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREP 747
K+ ++ + + + + + AA + K G S++TQ ++++
Sbjct: 436 KKAMEKLYQAAFLNRIPLAEAAEKLVSEKTLG----SKITQSLG-----QLMNDFSEWRK 486
Query: 748 SISAVITSVANMVPQKYLLEQRAVVDFDGGK-LLNEDNDLRSV--LQYLLADVTDFLSTK 804
S+S I S A++ R ++D G K +L ND++S L+ L T+
Sbjct: 487 SLS--IVSHADVT--------RKMLDESGYKAMLRAVNDVQSAGRLENL---------TE 527
Query: 805 FTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDN---ENSVTLTTIHQSKG 861
A EE + L +F++++S H+N ++ +TL T+H +KG
Sbjct: 528 LARAMEE----------YDDLGSFLEHVS-------LVMDHENDPIDDKITLMTMHAAKG 570
Query: 862 LEWDIVFVAKANETEIPLVHEFN-GAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM-- 918
LE+D VF+ E P + G +N S+EEERRL YV +TRA+K I +
Sbjct: 571 LEFDHVFLPGWEEGVFPSQRSLDEGGLN----SLEEERRLAYVGITRAKKCCTIFHAANR 626
Query: 919 -MDANWQLLQPSRFLKEIP-HHLRE 941
+ W PSRF+ E+P H+ E
Sbjct: 627 RVYGQWIASTPSRFISELPDDHIEE 651
>gi|281420327|ref|ZP_06251326.1| ATP-dependent DNA helicase PcrA [Prevotella copri DSM 18205]
gi|281405629|gb|EFB36309.1| ATP-dependent DNA helicase PcrA [Prevotella copri DSM 18205]
Length = 836
Score = 226 bits (577), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 202/725 (27%), Positives = 337/725 (46%), Gaps = 108/725 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
L LN+ Q AA + P L++AG GSGK G+ P +I+A+TFT A
Sbjct: 4 LNDLNEAQ-RAAVEYIDGPSLVIAGAGSGKTRVLTYKIAYLLSQGMKPWSIMALTFTNKA 62
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIE 350
A EM++RIG +VG A+ L + TFHS ++ R+ AE + + F IY R
Sbjct: 63 AREMKERIGKLVGNDLAQHLYMGTFHSIFSRILRAEAEHIGFNNNFTIYDESDSRS---- 118
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
++K I +M D Y A++ SM+ L +E D
Sbjct: 119 -----------LIKAIVKEMGLDDKK--YKPAAVHAK-----ISMAKNNLMSAAAYESDA 160
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
+ A+ ++G I Y + NA+D+ DL+ + +L ++
Sbjct: 161 TIFEQ---NKRAQMPEVG-----KIFVAYVQRCKQANAMDFDDLLMLTYQLFREHEDIRH 212
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSL-LQILASHNRITIVGDDDQSIFSFNGADISGFDSFR 529
+Y + ++VDE+QDT+ +Q S+ +Q+ R+ VGDD QSI+SF GA+I +F+
Sbjct: 213 KYAARFDYVLVDEYQDTNHVQMSIVMQLCQEKQRVCAVGDDSQSIYSFRGANIDNILNFQ 272
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQL-KNVQTDNSHGSKIIIKECHNE 588
+ F + +L +NYRST+ IVEAA+SLI+HN R Q+ K+V ++N+ G KI K +++
Sbjct: 273 RQFQGTRLFKLEQNYRSTQTIVEAANSLIKHN--RNQIPKDVFSENAKGEKIQYKPAYSD 330
Query: 589 DAQCAFIIDKILE-HASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVA 646
+ A + + +G C Y AILYR + F+ FR++ IP+ I+ G++
Sbjct: 331 KEEAAIVAKDVKRIRREDG----CQYSDFAILYRTNSQSRSFEEEFRKQGIPYRIYGGLS 386
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDK---ISTIRKC 703
FY++K ++ IIA R D+ E KR+I++ + +T+ K
Sbjct: 387 FYQRKEIKDIIAYFRLVANPNDE---------------EAIKRIINYPARGIGATTVLKI 431
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLE----MISKLVRREPSISAVITSVANM 759
+ + + ++ G +R L + + LE +IS + R + + + +
Sbjct: 432 ADCAHQNQVSFWEVIGAPERYGLAVNKGTMNKLETFRLLISSFIERAQTTD--VYELGDA 489
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
+ ++ + Q + D L ++N L+ L+ ++ F+ + +EEG D+
Sbjct: 490 IIKESGISQDIMSGKDADDLARQEN-----LEEFLSGMSAFVEER----REEGKFDE--- 537
Query: 820 GCINVLKAFI-DYISERETEHFRTQRHD-NENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
F+ DY+ + D +E V+L T+H +KGLE+ VFV E
Sbjct: 538 -------LFLQDYLQDVALLTDADSDGDKDEPRVSLMTVHAAKGLEFPTVFVVGLEENIF 590
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSRFLKE 934
P + +EEERRLLYVA+TRA K + + ++ PSRF+ E
Sbjct: 591 PSPLSATSLRD-----LEEERRLLYVAITRAEKHCILTNAKNRWRYGKMEFDNPSRFIDE 645
Query: 935 IPHHL 939
I L
Sbjct: 646 IDGKL 650
>gi|319641188|ref|ZP_07995889.1| helicase [Bacteroides sp. 3_1_40A]
gi|345518673|ref|ZP_08798116.1| hypothetical protein BSFG_01043 [Bacteroides sp. 4_3_47FAA]
gi|254834587|gb|EET14896.1| hypothetical protein BSFG_01043 [Bacteroides sp. 4_3_47FAA]
gi|317387162|gb|EFV68040.1| helicase [Bacteroides sp. 3_1_40A]
Length = 796
Score = 226 bits (577), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 216/741 (29%), Positives = 350/741 (47%), Gaps = 121/741 (16%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFT 287
+ YL+ LN+ Q A + P L++AG GSGK G +P +ILA+TFT
Sbjct: 2 TNYLEELNESQRNAVLYN-EGPSLVIAGAGSGKTRVLTYKIAYLLERGYTPWSILALTFT 60
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM++RI VG A+ L + TFHS ++ R A+ + TS F IY +
Sbjct: 61 NKAAREMKERIARQVGD-QARYLWMGTFHSIFSRILRCEAQAVGFTSNFTIYDSSDSKS- 118
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHF--GYMRASLFMMNAMLFFS---MSSFKLCQ 402
++K I +M D + G ++A + L F +S+ +L Q
Sbjct: 119 --------------LIKSIVKEMQLDDKTYKPGVIQARISNAKNHLVFPDAYVSNAELYQ 164
Query: 403 YNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLL 462
Y+ + K PA I Y R +A+D+ DL+ + L
Sbjct: 165 YD-----------LNAKVPAT---------RDIYRRYWERCRQSDAMDFDDLLVYTYMLF 204
Query: 463 STFPEVFQEYQDSWKAIIVDEFQDTSAMQYSL-LQILASHNRITIVGDDDQSIFSFNGAD 521
PE+ ++Y + ++ ++VDE+QDT+ Q+S+ LQ+ H R+ +VGDD QSI+SF GA+
Sbjct: 205 RDHPEICRKYAEQFRYVLVDEYQDTNFAQHSIVLQLTQEHQRVCVVGDDAQSIYSFRGAN 264
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII 581
I F + + K +L +NYRST+ IV AA+SLI+ N ++ + K V ++ + G I
Sbjct: 265 IDNILKFTQLYKGAKLFKLEQNYRSTQTIVCAANSLIEKNSEQIR-KEVFSEKAKGEPIG 323
Query: 582 IKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN 641
+ +++ + + ++I++ S SY AILYR ++F+ A R+R +P+
Sbjct: 324 VFNAYSDVEEGEIVANQIVKLRSR---EHYSYNDFAILYRTNAQSRIFEEALRKRALPYK 380
Query: 642 IH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTI 700
I+ G++FY++K ++ +I+ R + D+ ++RV R I +T+
Sbjct: 381 IYGGLSFYQRKEIKDVISYFRLAVNPNDEEAFKRVLNY--------PARGIGD----TTL 428
Query: 701 RKCSFISAACDIFGAKIS-GTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANM 759
K I AA +S L G + M +KL + + I V
Sbjct: 429 NKV--IDAAAQ---HHVSLWMVLEEPLAYGLNI--NKGMHTKLQGFRELVESFIVEV--- 478
Query: 760 VPQKYLLEQRAVVDFDGGKLLNE---DNDLRSV-----LQYLLADVTDFLSTKFTAAKEE 811
P+K E A++ G ++NE ND ++ ++ L+ + DF +T+ +EE
Sbjct: 479 -PKKNAYELGAMIVRQSG-IMNEIYQSNDPENLSRQENIEELINGMHDFCATR----EEE 532
Query: 812 GNVDQDKKGCINVLKAFIDYISERE--TEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFV 869
GN N+L D++SE T+ + D E +TL TIH +KGLE+ VFV
Sbjct: 533 GNE--------NIL--LTDFLSEVSLLTDQDNEKEGDAE-KITLMTIHSAKGLEFKNVFV 581
Query: 870 AKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ-- 927
E P N +EEERRL YVA+TRA + ++ + + ++
Sbjct: 582 VGMEENLFPSALSLNSY-----KELEEERRLFYVAITRAEEHCYLSFAKSRFKYGKMEFS 636
Query: 928 -PSRFLKEIP-HHLREVQAEQ 946
PSRFLK+I H L+ Q EQ
Sbjct: 637 SPSRFLKDIDVHFLKLPQEEQ 657
>gi|71909490|ref|YP_287077.1| ATP-dependent DNA helicase Rep [Dechloromonas aromatica RCB]
gi|71849111|gb|AAZ48607.1| ATP-dependent DNA helicase Rep [Dechloromonas aromatica RCB]
Length = 663
Score = 226 bits (577), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 200/715 (27%), Positives = 325/715 (45%), Gaps = 113/715 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN QQ EA + PLL++AG GSGK G P NI A+TFT
Sbjct: 1 MSGLNPQQREA-IHYLDGPLLVLAGAGSGKTRVITQKIAYLVQDCGFQPRNIAAITFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++RIG I+ K A +L ISTFHS +++ R A+ L F I+ I
Sbjct: 60 AAKEMQERIGKILSKPQADDLQISTFHSLGVRILREEAKALGYKPRFSIFDSADCAGIIS 119
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
EA + ++ G ++++ + L ++ KL
Sbjct: 120 EAAKTVDK-----------------GTLRHLQSIISNWKNGLITPEAALKL--------- 153
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
AK +T + A +Y L++ A+D+ DLI V L P++
Sbjct: 154 ----AKDDHET----------LAAHAYLSYEATLKAYQAVDFDDLIGLPVVLFQQHPDIA 199
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSF 528
+++Q+ + ++VDE+QDT+A QY LL++L + T VGDDDQ+I+ + GADI
Sbjct: 200 EKWQNRLRYLLVDEYQDTNACQYQLLKLLTGVRAQFTAVGDDDQAIYGWRGADIDNLKKL 259
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
+F K I+L +NYRST I++AA+++I +N K K + +D HG +I++ C +
Sbjct: 260 PAEFPALKVIKLEQNYRSTVRILKAANNVIANNEKLFD-KKLWSDLGHGEQIVVTACRDN 318
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAF 647
DA+ ++ K+ H Y AILYR + F+ R+ +IP+ + G +F
Sbjct: 319 DAEAEGVVMKLQAHRFQHRGKFKDY---AILYRSNHQARGFEEYLRDHRIPYLLSGGKSF 375
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIRKC 703
+ K ++ I A LR L DD P AF+ K+ + + + + R
Sbjct: 376 FDKPEIKDITAYLR-LLTNEDDDP------AFIRAATTPKRGIGAATLQVLGTYAGERHI 428
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
S AA + G +R Q Q +L I++L R + A Q+
Sbjct: 429 SLFQAAFE------EGFAQRVQARQLEPLLEFCNFINRLQHRAGTEPA----------QQ 472
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
L + +D++ L + + R+ Q +V +F + +E+G D I
Sbjct: 473 VLPDLLKAIDYE--TFLYDHEEERTA-QTRWGNVCEFANWLNKKGEEQGKTLIDLTQSI- 528
Query: 824 VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
A I+ + +++ E + ++V L+T+H +KGLE+ VF+ E +P
Sbjct: 529 ---ALINMLDKQKDEDY--------DAVQLSTLHAAKGLEYKHVFLVGIEEGILPHRESV 577
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEI 935
+ A +EEERRL+YV +TRA+ L I Y + +PSRF+ E+
Sbjct: 578 DPA------KIEEERRLMYVGITRAQHTLNISYCERRKQMREFIPCEPSRFIDEM 626
>gi|407698188|ref|YP_006822976.1| UvrD/REP helicase domain-containing protein [Alcanivorax dieselolei
B5]
gi|407255526|gb|AFT72633.1| UvrD/REP helicase domain protein [Alcanivorax dieselolei B5]
Length = 737
Score = 226 bits (576), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 196/724 (27%), Positives = 329/724 (45%), Gaps = 102/724 (14%)
Query: 239 DEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILA 283
D+ + L LN Q +A + LL++AG GSGK SP ILA
Sbjct: 19 DDVTTLLDGLNPAQRDAVAAE-DRHLLVLAGAGSGKTRVLVHRIAWQIATEQASPFGILA 77
Query: 284 MTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQ 343
+TFT AA+EMR RI ++ A + + TFH + +L RSH ++ F I
Sbjct: 78 VTFTNKAAAEMRGRIEQLLAM-PAGGMWVGTFHGIAHRLLRSHWQEARLPQSFEIIDADD 136
Query: 344 QRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFF-SMSSFKLCQ 402
Q+R + +R L ++ R +T + G A + + LF +M L
Sbjct: 137 QQRLVKRVIRELGLDEQRWPARQATWFINGQKDEGLRAAHMDVSGGDLFAATMQKIYLAY 196
Query: 403 YNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLL 462
ER G+ +D+++++ ++L
Sbjct: 197 EEACERAGL-------------------------------------VDFNEMLLRVLELF 219
Query: 463 STFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGAD 521
++ YQ ++ I+VDEFQDT+++QY+ L++LA HN +TIVGDDDQSI+ + GA
Sbjct: 220 RDNDDLRGHYQRRFRHILVDEFQDTNSIQYAWLRLLADEHNAVTIVGDDDQSIYGWRGAK 279
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII 581
I F +DF + + IRL +NYRST I+EAA+++I +N R K + T+ G I
Sbjct: 280 IENIHRFSRDFPDTRVIRLEQNYRSTSTILEAANAVIDNNPDRLG-KQLWTEGGKGDPIR 338
Query: 582 IKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN 641
+ NE + FI K+ G + +A+LYR +V + AF + IP+
Sbjct: 339 LYAGFNEVDEARFIAGKVESLMQQG----TNRDDMAVLYRSNAQSRVLEEAFLQAGIPYR 394
Query: 642 IHGVA-FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTI 700
I+G F+ + +R +A LR D + RV + + ++ + + + +
Sbjct: 395 IYGGQRFFERAEIRNALAYLRLLNNRQADAAFERVVNT---PTRGIGNKTLEAVREQARL 451
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
R AA I ++ + L L L+++ +L + ++ T+
Sbjct: 452 RGIPLWDAAVAIVNERLLSPRASNAL------LAFLQLVDQLAAQTEALDLAETT----- 500
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
++++ ++DF G + ++ LQ L++ + +F EE ++D
Sbjct: 501 --EHVIAASGLLDFHGQEKGDKGQQRVENLQELVS-----ATRQFGEGDEESDLDP---- 549
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
L AF+D+ + E Q E++V + T+H +KGLE+ +VF+ E P
Sbjct: 550 ----LTAFLDHAA---LEAGDGQAEAFEDAVQMMTLHSAKGLEFPVVFITGLEEGLFP-- 600
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPH 937
H+ + +E+ + EERRL YV +TRA ++L++ Y + N L PSRFL+EIP
Sbjct: 601 HQMS---SEEPGRLAEERRLCYVGLTRAMRELYLTYAESRRLFGNETLNPPSRFLREIPG 657
Query: 938 HLRE 941
L E
Sbjct: 658 ELVE 661
>gi|385260271|ref|ZP_10038419.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. SK140]
gi|385191535|gb|EIF38948.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. SK140]
Length = 762
Score = 226 bits (576), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 211/729 (28%), Positives = 337/729 (46%), Gaps = 115/729 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LKGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R + ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYGL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAKCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ ++E
Sbjct: 266 EKDYPQAKVVLLEENYRSTKTILQAANDVIKNNKNR-RPKNLWTQNADGEQIVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+ I E G + + A+LYR + + A + IP+ + G F
Sbjct: 325 QDEAVFVAKTIDEL---GRSQNFLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRK 702
Y +K +R IIA L D+ + R+ E KR ++ I + ++
Sbjct: 382 YSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANLQN 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ +I + I G +S +L E + +L SI+ ++ +V
Sbjct: 434 MSMLDASANIMLSGIKGKAAQSIWDFANMILDLREQLDQL-----SITELVEAV------ 482
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
LE+ VD +LN L S + + ++ +FLS T ++ +Q+++ +
Sbjct: 483 ---LEKTGYVD-----ILNTQATLESKAR--VENIEEFLSV--TKNFDDNPDNQEEETGL 530
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 531 DKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGMEENVFPLSR- 586
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+ EI
Sbjct: 587 ----AAEDMDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFINEI 638
Query: 936 PHHLREVQA 944
L Q
Sbjct: 639 SSDLLTYQG 647
>gi|58336855|ref|YP_193440.1| ATP-dependent helicase [Lactobacillus acidophilus NCFM]
gi|227903414|ref|ZP_04021219.1| ATP-dependent helicase [Lactobacillus acidophilus ATCC 4796]
gi|58254172|gb|AAV42409.1| ATP-dependent helicase [Lactobacillus acidophilus NCFM]
gi|227868890|gb|EEJ76311.1| ATP-dependent helicase [Lactobacillus acidophilus ATCC 4796]
Length = 746
Score = 226 bits (576), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 207/742 (27%), Positives = 330/742 (44%), Gaps = 128/742 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +LN QQ + A PLL+VAG GSGK ++P NILA+TFT
Sbjct: 7 LANLNPQQ-KKAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEENNVAPWNILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AASEMR+R ++G A A+ + +STFH+ +++ R A+K+ F I +Q
Sbjct: 66 AASEMREREQDLLGPA-AENIWMSTFHALCVRILRRDADKINYDHNFSIADSAEQ----- 119
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +VK I D+ +N ++ K +
Sbjct: 120 ----------LTLVKHIEKDL---------------NINPKMYDPRGVLSAISNGKNDLL 154
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D +AS +P E ++ A I + Y LR +D+ DLI ++ L PE
Sbjct: 155 DPDAFEASASSPFE------KMTAKIYKEYQRRLRRDQIMDFDDLIMQTLVLFKKSPETL 208
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSF 528
Q YQD ++ I+VDE+QDT+ QY L LA+ H I +VGD DQSI+ + GA++ +F
Sbjct: 209 QYYQDKFRYILVDEYQDTNQAQYELCHSLAAKHKNICVVGDADQSIYGWRGANMENIMNF 268
Query: 529 RKDFL--NYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
+D+ K ++L +NYRST I+ AA+S+I++N R + KN+ TD G KI +
Sbjct: 269 EQDYKKDGVKTVKLEQNYRSTGHILSAANSVIKNNQNR-KAKNLWTDQGDGQKITYYQAQ 327
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGV 645
+ D + +II KI + + SY AILYR + + AF + IP+ I G
Sbjct: 328 SGDDEAHYIISKIKKEVEDKKR---SYKDFAILYRTNAQSRTVEEAFVKSNIPYQIVGGH 384
Query: 646 AFYRKKVVRAIIAMLRTTLPGCD--------DGPYRRVFKA----FLLLEKEEKKRVIDH 693
FY +K ++ I+A L+ D + P R + A L E +D
Sbjct: 385 KFYDRKEIKDIMAYLKLVANPADTMSMNRIINTPKRGIGAATVDKLLTFADENNYTALDA 444
Query: 694 IDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI 753
++ ++ + + + FG K+ R+ A I
Sbjct: 445 MEHVAESTISTRAAKKLNDFGIKL---------------------------RDAIAYAQI 477
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST--KFTAAKEE 811
V L ++ + DFD + L +N + + + L ++ +FL+ +F E
Sbjct: 478 HGVTG-------LTEKILEDFDYTEALRRENTIEA--ETRLENLDEFLTVTKRFDDHYEP 528
Query: 812 GNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAK 871
+ D + D+++E + D+ N V L T+H +KGLE+ +VF+
Sbjct: 529 EDDDSN---------PLSDFLAEVSLLSDQDDIDDDGNQVALMTLHAAKGLEFPVVFLIG 579
Query: 872 ANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQP 928
+ PL +EEERRL YV +TRA+++LF+ MM Q
Sbjct: 580 MEDGLFPLQRAM-----MDDNELEEERRLAYVGITRAKQELFLTNAYSRMMYGRTQNNPA 634
Query: 929 SRFLKEIPHHLREVQAEQSVQD 950
SRFL EI + +A + +Q+
Sbjct: 635 SRFLDEIEPKDIQKEANEKLQN 656
>gi|227535467|ref|ZP_03965516.1| ATP-dependent DNA helicase [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|227186877|gb|EEI66944.1| ATP-dependent DNA helicase [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
Length = 751
Score = 226 bits (576), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 210/724 (29%), Positives = 328/724 (45%), Gaps = 108/724 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ +ND+Q EA P+LI+AG GSGK ++P NILA+TFT
Sbjct: 7 LKGMNDKQSEAVLA-TEGPVLIMAGAGSGKTRVLTHRIAYLVEEKHVNPWNILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+G +V A+++ +STFH+ +++ R +KL F I +Q
Sbjct: 66 AAREMRERVGKLVDAEIARDIWVSTFHALCVRILRRDIDKLGYNRAFTIADPAEQ----- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER- 408
+ +VK I D F ++ + S K E
Sbjct: 121 ----------LTLVKHILAD---------------FNLDPKRYDPKSILGAISSAKNELV 155
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D A +P F K+ A + Y LRS ALD+ DLI ++ L E
Sbjct: 156 DPQTYANEQANSP--FTKVV----AQVYAEYQKRLRSDQALDFDDLIMQTIVLFEKDKET 209
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDS 527
YQ ++ I VDE+QDT+ QY L+ +LA ++ + +VGD DQSI+ + GA++
Sbjct: 210 LAFYQRKFRYIHVDEYQDTNEAQYQLVHMLAEGYHNLCVVGDADQSIYGWRGANMQNILD 269
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F+KD+ + + L +NYRST+ I+ AA+ +IQ+N R Q K + T+N G KI +
Sbjct: 270 FKKDYPKAQVVLLEQNYRSTKTILSAANDVIQNNQNR-QAKTLWTENREGDKITYYRAQS 328
Query: 588 EDAQCAFIIDKI-LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
E + F+I +I E A N Y AILYR + + AF + IP+ + G
Sbjct: 329 ETDEAIFVIRRIEAEIADNH----RKYSDFAILYRTNAQSRAIEEAFVKSNIPYKMVGGH 384
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIR 701
FY +K +R +A R + DD + R+ E K+ + ++ ++ I+
Sbjct: 385 KFYDRKEIRDALAYFRLVVNPEDDMSFNRIV-------NEPKRGIGNTSVEKLEAIANEH 437
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
S + AA + + I+G R QL + K MI +L R ++ A +
Sbjct: 438 DWSLLEAAANAELSPIAGK-ARGQLAKFGK------MIQQLGTRRKDLNVTEMMQAILED 490
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
YL RA + + + +L SV Q F + + N D D
Sbjct: 491 SGYLSTLRAAHNLEADTRIENLEELLSVTQ------------GFDSRYQPENEDSD---- 534
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
F+D+++E + ++ VTL T+H +KGLE+ +VF+ E PL
Sbjct: 535 -----IFVDFLAELALLSDQDDVEEDAQEVTLMTLHAAKGLEFPVVFLVGMEEGLFPLSR 589
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHH 938
+ + +EEERRL YV +TRA++KL++ M+ Q SRF++EI
Sbjct: 590 -----ASMDESELEEERRLAYVGITRAKQKLYLSNAYGRMLYGQRQNNPASRFIEEINPD 644
Query: 939 LREV 942
L EV
Sbjct: 645 LLEV 648
>gi|170755491|ref|YP_001782895.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum B1 str.
Okra]
gi|429245147|ref|ZP_19208558.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum CFSAN001628]
gi|169120703|gb|ACA44539.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum B1 str.
Okra]
gi|428757812|gb|EKX80273.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum CFSAN001628]
Length = 738
Score = 226 bits (576), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 203/698 (29%), Positives = 334/698 (47%), Gaps = 126/698 (18%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EAA + PLLI+AG GSGK I PS ILA+TFT AA
Sbjct: 7 LNKEQYEAAIT-IDGPLLILAGAGSGKTRVLTYRIAHMIENLNIYPSKILAITFTNKAAG 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++RI ++VG + + +STFHS +++ R +KL F IY Q+ + + +
Sbjct: 66 EMKERIKALVGD-VVEGMWVSTFHSSCVRILRREIDKLGYDKNFTIYDTYDQKTLVKQCM 124
Query: 353 RLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
L N+K + + + + + S FK + +D
Sbjct: 125 EELNINDKEITDREVINTISNQKDN---------------LISPKEFKKISNGNYRKD-- 167
Query: 412 DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQE 471
+I D A IL Y L++ NALD+ DLI +V+L T EV +
Sbjct: 168 --------------RIAD---AYIL--YQKKLKTNNALDFDDLIYKTVELFKTNKEVLEF 208
Query: 472 YQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRK 530
YQ ++ I+VDE+QDT+ QY L+++LAS H I +VGDDDQ I+ + GADIS +F K
Sbjct: 209 YQRKFRYIMVDEYQDTNKCQYELVKLLASVHRNICVVGDDDQCIYEWRGADISNILNFEK 268
Query: 531 DFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDA 590
D+ K I+L +NYRS I+ AA+ +I++N +R K ++T+N +G+KI + +++
Sbjct: 269 DYKEAKVIKLEQNYRSKGNILNAANEVIKNNSQRKN-KVLRTENENGNKIKVFRAYSDID 327
Query: 591 QCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFYR 649
+ F +I + S+ A+LYR ++F+ F +R IP+ I G+ FY
Sbjct: 328 EAKFAASEIKNIIKDSKK---SFNDFAVLYRTNAQSRIFEDVFMKRDIPYRLIGGLKFYD 384
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAA 709
+K ++ ++A L+ DD RR+ KR I +T++K +
Sbjct: 385 RKEIKDLMAYLKLINNPLDDISLRRIINV--------PKRSIGD----ATVKKVQEFANE 432
Query: 710 CD------IFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRR--EPSISAVITSVANMVP 761
D + A T + +T +K + +++ +R+ E S+SA+I
Sbjct: 433 MDECMYSVLLDADQILTLSQRSITSIKKF---VSIMNSFIRKKDEISVSALI-------- 481
Query: 762 QKYLLEQRAVVDFDGGKLLNEDN--DLRSV--LQYLLADVTDFLSTKFTAAKEEGNVDQD 817
K +LE+ + +L N N D+ V L+ L++ DF E + D+
Sbjct: 482 -KEILEETGYL----KELKNSKNPDDVSRVENLKELVSAAADF---------ERESEDKS 527
Query: 818 KKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
L AF++ ++ + +++ +N +SV + T+H +KGLE+ +VF+
Sbjct: 528 -------LGAFLEKVALVTDIDNY----DENSDSVAMMTVHSAKGLEFPVVFMVGMENGI 576
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI 914
P + +EE RRL YVA+TRA+++L+I
Sbjct: 577 FPGTQSLSDP-----KEMEESRRLCYVAITRAKEQLYI 609
>gi|15895932|ref|NP_349281.1| ATP-dependent DNA helicase [Clostridium acetobutylicum ATCC 824]
gi|337737885|ref|YP_004637332.1| ATP-dependent DNA helicase [Clostridium acetobutylicum DSM 1731]
gi|384459395|ref|YP_005671815.1| ATP-dependent superfamily I DNA helicase, PCRA [Clostridium
acetobutylicum EA 2018]
gi|15025705|gb|AAK80621.1|AE007765_3 ATP-dependent superfamily I DNA helicase, PCRA [Clostridium
acetobutylicum ATCC 824]
gi|325510084|gb|ADZ21720.1| ATP-dependent superfamily I DNA helicase, PCRA [Clostridium
acetobutylicum EA 2018]
gi|336292350|gb|AEI33484.1| ATP-dependent DNA helicase [Clostridium acetobutylicum DSM 1731]
Length = 756
Score = 226 bits (576), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 203/721 (28%), Positives = 344/721 (47%), Gaps = 114/721 (15%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAAS 292
LN++Q +AA + P+LI+AG GSGK I PS ILA+TFT AA
Sbjct: 7 LNEEQYKAAT-KIDGPILILAGAGSGKTRVLTYRIAHMVKDLEIYPSQILAITFTNKAAK 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM+DR+ +++G + ISTFHS +++ R +K+ F IY Q+ + E +
Sbjct: 66 EMKDRVKALIGGNEIDNMWISTFHSCCVRILRREIDKIGYNKNFTIYDSDDQKVLMRECI 125
Query: 353 RLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
+ + NEK + K I + + G + L N + +FKL
Sbjct: 126 KQVGINEKDITEKEIISKI-------GSAKDGLVSANQYKNQNSGNFKL----------- 167
Query: 412 DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQE 471
KI D + Y L+ NALD+ DLI +V+L P+V
Sbjct: 168 -------------NKIAD-----VYLLYQKKLKENNALDFDDLIFKTVELFKKAPDVLAF 209
Query: 472 YQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDSFRK 530
YQ ++ I++DE+QDT+ QY ++LAS N+ + +VGDDDQ I+ + GADI +F K
Sbjct: 210 YQRKFRYIMIDEYQDTNKSQYEFARLLASANKNLCVVGDDDQCIYGWRGADIRNILNFEK 269
Query: 531 DFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH---N 587
D+ N I+L NYRS I++AA+ +I++N LK+++T + G+KI + +
Sbjct: 270 DYRNAVIIKLEENYRSKGNILKAANGVIKNNPHE-HLKSLRTRSEDGAKIKVYRGETDLD 328
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
E + AF I+K ++ S+ AILYR +VF+ F +R IP+ I G+
Sbjct: 329 EASFAAFKINKEVKEEKR------SFKDFAILYRTNAQSRVFEDIFIKRNIPYRIIGGLK 382
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIS-TIRKCSF 705
FY +K ++ I++ L+ D+ +R+ + ++ + + + + + + +C +
Sbjct: 383 FYDRKEIKDIMSYLKLIGNPLDNISLKRIIN---VPKRSIGQTTLGRLQQFADEVEECLY 439
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYL 765
A DI I G KR+ + + MI+ +RR+ I+ + + YL
Sbjct: 440 -DALLDI--ENIPGIPKRAISS----IKEFTGMINSFIRRKDEINVSVLIKEILEQTGYL 492
Query: 766 LEQRAVVDF-DGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINV 824
E +A D D ++ N ++ L+ DF EE + D+
Sbjct: 493 NELKASDDIQDKARIEN--------IEELVNAAVDF---------EENSDDK-------T 528
Query: 825 LKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
L AF++ + + +++ +++ ++V + T+H +KGLE+ +VF+A P + F
Sbjct: 529 LAAFLEKTALVADVDNY----NEDADTVVMMTVHSAKGLEFPVVFMAGMENGIFPGMASF 584
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD---ANWQLLQPSRFLKEIPHHLR 940
N +EE RRL YV +TRA++KL++ + Q + S F+ EI +L+
Sbjct: 585 NSEY-----EMEESRRLAYVGITRAKEKLYMTSAKLRRVFGKTQAFEESDFINEIDENLK 639
Query: 941 E 941
E
Sbjct: 640 E 640
>gi|401683308|ref|ZP_10815194.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. BS35b]
gi|400187386|gb|EJO21580.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. BS35b]
Length = 763
Score = 226 bits (576), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 212/729 (29%), Positives = 336/729 (46%), Gaps = 115/729 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEAVQM-TEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R + ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYGL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +II ++E
Sbjct: 266 EKDYPKAKVVLLEENYRSTKTILQAANDVIKNNKNR-RPKNLWTQNADGEQIIYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+ I E G + A+LYR + + A + IP+ + G F
Sbjct: 325 LDEAVFVAKTIDEL---GRTQNFLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRK 702
Y +K +R IIA L D+ + R+ E KR ++ I + +++
Sbjct: 382 YSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANMQE 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ +I + I G +S +L E + +L +I+ ++ +V
Sbjct: 434 MSMLDASANIMLSGIKGKVAQSIWDFANMILDLREQLDQL-----TITELVEAV------ 482
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
LE+ VD +LN L S + + ++ +FLS T ++ Q+++ +
Sbjct: 483 ---LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSV--TKNFDDNPDSQEEETGL 530
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 531 DKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFIIGMEENVFPLSR- 586
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+ EI
Sbjct: 587 ----AAEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTSYNRPTRFINEI 638
Query: 936 PHHLREVQA 944
L E Q
Sbjct: 639 SSDLLEYQG 647
>gi|150006034|ref|YP_001300778.1| helicase [Bacteroides vulgatus ATCC 8482]
gi|423314818|ref|ZP_17292751.1| hypothetical protein HMPREF1058_03363 [Bacteroides vulgatus
CL09T03C04]
gi|149934458|gb|ABR41156.1| putative helicase [Bacteroides vulgatus ATCC 8482]
gi|392681565|gb|EIY74923.1| hypothetical protein HMPREF1058_03363 [Bacteroides vulgatus
CL09T03C04]
Length = 796
Score = 226 bits (576), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 216/741 (29%), Positives = 350/741 (47%), Gaps = 121/741 (16%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFT 287
+ YL+ LN+ Q A + P L++AG GSGK G +P +ILA+TFT
Sbjct: 2 TNYLEELNESQRNAVLYN-EGPSLVIAGAGSGKTRVLTYKIAYLLERGYTPWSILALTFT 60
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM++RI VG A+ L + TFHS ++ R A+ + TS F IY +
Sbjct: 61 NKAAREMKERIARQVGD-QARYLWMGTFHSIFSRILRCEAQAVGFTSNFTIYDSSDSKS- 118
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHF--GYMRASLFMMNAMLFFS---MSSFKLCQ 402
++K I +M D + G ++A + L F +S+ +L Q
Sbjct: 119 --------------LIKSIVKEMQLDDKTYKPGVIQARISNAKNHLVFPDAYVSNAELYQ 164
Query: 403 YNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLL 462
Y+ + K PA I Y R +A+D+ DL+ + L
Sbjct: 165 YD-----------LNAKVPAT---------RDIYRRYWERCRQSDAMDFDDLLVYTYMLF 204
Query: 463 STFPEVFQEYQDSWKAIIVDEFQDTSAMQYSL-LQILASHNRITIVGDDDQSIFSFNGAD 521
PE+ ++Y + ++ ++VDE+QDT+ Q+S+ LQ+ H R+ +VGDD QSI+SF GA+
Sbjct: 205 RDHPEICRKYAEQFRYVLVDEYQDTNFAQHSIVLQLTQEHQRVCVVGDDAQSIYSFRGAN 264
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII 581
I F + + K +L +NYRST+ IV AA+SLI+ N ++ + K V ++ + G I
Sbjct: 265 IDNILKFTQLYKGAKLFKLEQNYRSTQTIVCAANSLIEKNSEQIR-KEVFSEKAKGEPIG 323
Query: 582 IKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN 641
+ +++ + + ++I++ S SY AILYR ++F+ A R+R +P+
Sbjct: 324 VFNAYSDVEEGEIVANQIVKLRSR---EHYSYNDFAILYRTNAQSRIFEEALRKRALPYK 380
Query: 642 IH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTI 700
I+ G++FY++K ++ +I+ R + D+ ++RV R I +T+
Sbjct: 381 IYGGLSFYQRKEIKDVISYFRLAVNPNDEEAFKRVLNY--------PARGIGD----TTL 428
Query: 701 RKCSFISAACDIFGAKIS-GTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANM 759
K I AA +S L G + M +KL + + I V
Sbjct: 429 NKV--IDAAAQ---HHVSLWMVLEEPLAYGLNI--NKGMHTKLQGFRELVESFIVEV--- 478
Query: 760 VPQKYLLEQRAVVDFDGGKLLNE---DNDLRSV-----LQYLLADVTDFLSTKFTAAKEE 811
P+K E A++ G ++NE ND ++ ++ L+ + DF +T+ +EE
Sbjct: 479 -PKKNAYELGAMIVRQSG-IMNEIYQSNDPENLSRQENIEELINGMHDFCATR----EEE 532
Query: 812 GNVDQDKKGCINVLKAFIDYISERE--TEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFV 869
GN N+L D++SE T+ + D E +TL TIH +KGLE+ VFV
Sbjct: 533 GNE--------NIL--LTDFLSEVSLLTDQDNEKEGDAE-KITLMTIHSAKGLEFKNVFV 581
Query: 870 AKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ-- 927
E P N +EEERRL YVA+TRA + ++ + + ++
Sbjct: 582 VGMEENLFPSALSLNSY-----KELEEERRLFYVAITRAEEHCYLSFAKSRFKYGKMEFS 636
Query: 928 -PSRFLKEIP-HHLREVQAEQ 946
PSRFLK+I H L+ Q EQ
Sbjct: 637 SPSRFLKDIDVHFLKLPQEEQ 657
>gi|284040435|ref|YP_003390365.1| UvrD/REP helicase [Spirosoma linguale DSM 74]
gi|283819728|gb|ADB41566.1| UvrD/REP helicase [Spirosoma linguale DSM 74]
Length = 764
Score = 226 bits (576), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 209/731 (28%), Positives = 342/731 (46%), Gaps = 131/731 (17%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
Y+ LND Q EA S PL+I+AG GSGK G+ P IL++TFT
Sbjct: 4 YISGLNDPQREAVMHG-SGPLMIIAGAGSGKTRVLTYRIAHLIENGVDPFRILSLTFTNK 62
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQR---R 346
AA EMR+RI +VG A+ + + TFHS ++ R A+ + TS F IY + R
Sbjct: 63 AAGEMRNRIEKVVG-TEARNIWMGTFHSVFAKILRIEAKAIGYTSNFSIYDTDDSKSLLR 121
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
+I++ + L ++K+ V + + + + ++ NA++ S ++ K
Sbjct: 122 SIVKEMAL--DDKVYRVNSVFSRISGAKNRL--IGPEDYINNAVIQADDESARMPHIGK- 176
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
I + Y + NA+D+ DL+ + L
Sbjct: 177 ----------------------------IYKQYALRCFAANAMDFDDLLFNTNVLFRDHL 208
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGF 525
++ +YQ ++ ++VDEFQDT+ QY + + LA+ H I IVGDD QSI++F GA+I
Sbjct: 209 DILHKYQHKFQHVMVDEFQDTNVSQYLITRKLAAVHQNICIVGDDAQSIYAFRGANIENI 268
Query: 526 DSFRKDFL--NYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
+F++D+ N K ++L +NYRST+ IVEAA+S+I N + + K+V T N G I +
Sbjct: 269 LNFQRDYGKENVKIVKLEQNYRSTKTIVEAANSIISRNKNQLE-KSVFTANEDGPLIDLI 327
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-I 642
+ +++ + + I E N + AILYR + F+ A R+ I + I
Sbjct: 328 KASSDNEEGRLVASSIFEAKMNES---LTNNDFAILYRTNAQSRAFEEALRKVSIKYRII 384
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRK 702
G++FY++K ++ +I LR T+ D+ ++R+ K+ + D +T+ K
Sbjct: 385 GGLSFYQRKEIKDLIGYLRFTVNQQDEEAFKRIINL-------PKRGIGD-----TTVAK 432
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV-ITSVANMVP 761
S I+A K E+++ + + SA+ I AN++
Sbjct: 433 ISVIAA---------------------EKQESIWEIVANIGQHVAGRSAIPIEGFANLIK 471
Query: 762 Q-KYLLEQRAVVDFDG-----GKLLNEDNDLRSV--------LQYLLADVTDFLSTKFTA 807
K LL+Q+ + LL E D ++V +Q LL + +F+
Sbjct: 472 SYKLLLDQKDAFEVASHIAKTSGLLKELYDDKTVEGLARYENVQELLNAIKEFVD----- 526
Query: 808 AKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIV 867
N D ++K L AF+ +S T + DN+ VTL TIH +KGLE+ V
Sbjct: 527 -----NPDNEEKS----LSAFLQSVSLLTTADEKEDDGDND-KVTLMTIHAAKGLEFKNV 576
Query: 868 FVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---Q 924
+ E P + + E + +EEERRL YVA+TRA K+L + Y ++ +
Sbjct: 577 HIVGLEEDLFP-----SQMMLESRSDLEEERRLFYVAITRAEKRLTVSYAETRYHYGRLK 631
Query: 925 LLQPSRFLKEI 935
+ +PSRFL EI
Sbjct: 632 MCEPSRFLMEI 642
>gi|28867353|ref|NP_789972.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tomato
str. DC3000]
gi|28850587|gb|AAO53667.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tomato
str. DC3000]
Length = 669
Score = 226 bits (576), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 193/726 (26%), Positives = 325/726 (44%), Gaps = 125/726 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+AMTFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ + LT+STFH+ L + R +L F I+
Sbjct: 60 AAREMKERVGTLLKGGEGRGLTVSTFHNLGLNIIRKEHTRLGYKPGFSIFDETD------ 113
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
VK + TD++ Q D
Sbjct: 114 -------------VKALMTDIM------------------------------QKEYSGDD 130
Query: 410 GMDVAK---ASGKT----PAEF----RKIGDEIGAAILENYNGILRSCNALDYHDLISCS 458
G+D K S K PAE R ++ A + +Y L++ NA+D+ DLI
Sbjct: 131 GVDAIKNMIGSWKNDLILPAEALENARNPKEQTAAIVYTHYQRTLKAYNAVDFDDLILVP 190
Query: 459 VKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSF 517
VKL P+V +++Q+ + ++VDE+QDT+A QY L+++L + N+ T+VGDDDQSI+++
Sbjct: 191 VKLFQEHPDVLEKWQNKVRYLLVDEYQDTNASQYLLVKLLIGTRNQFTVVGDDDQSIYAW 250
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GA + D+ + K + L +NYRST I+ A+ LI +N + K + ++ HG
Sbjct: 251 RGARPENLMLLKDDYPSLKVVMLEQNYRSTSRILRCANVLISNNPHAFE-KQLWSEMGHG 309
Query: 578 SKIIIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
+I + C NEDA+ + +I L ++ P Y AILYR K+ + +
Sbjct: 310 DEIRVIRCRNEDAEAERVAMEILTLHLRTDRP-----YSDFAILYRGNYQAKLIELKLQH 364
Query: 636 RKIPFNIHGV-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
++P+ + G +F+ ++ V+ ++A R + DD + RV + +E ++ +
Sbjct: 365 HQVPYRLSGGNSFFGRQEVKDLMAYFRLLVNPDDDNAFLRVIN---VPRREIGSTTLEKL 421
Query: 695 DKISTIRKCSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI 753
+T RK S +A +I G + + +L R + + V
Sbjct: 422 GNYATERKVSMYAATEEIGLGEHLDSRY-----------------TDRLQRFKRWMDGVR 464
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
A P L + V+D D L +++ Y +++V F +
Sbjct: 465 QQCAQNDPIAAL--RSMVMDIDYENWLRQNSSSEKAADYRMSNVW------FLIEALKNT 516
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+++D++G + + +A I + R+ + + D V + T+H SKGLE+ VF+
Sbjct: 517 LEKDEEGGMTIEEA-IGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGME 575
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSR 930
E +P + ++EEERRL YV +TRAR+ L + + + PSR
Sbjct: 576 EEILPHRSSI------EADTIEEERRLAYVGITRARQTLAFTFAAKRKQYGEIIDCAPSR 629
Query: 931 FLKEIP 936
FL E+P
Sbjct: 630 FLDELP 635
>gi|388255964|ref|ZP_10133145.1| DNA-dependent helicase II [Cellvibrio sp. BR]
gi|387939664|gb|EIK46214.1| DNA-dependent helicase II [Cellvibrio sp. BR]
Length = 747
Score = 226 bits (576), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 197/722 (27%), Positives = 329/722 (45%), Gaps = 103/722 (14%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTF 286
S L LN++Q EA +T LI+AG GSGK +SP +I+A+TF
Sbjct: 11 SLLLDQLNNEQREAVSAP-ATNQLILAGAGSGKTRVLVHRIAWLIQVEQMSPYSIMAVTF 69
Query: 287 TTAAASEMRDRIGSIVGK----ATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHG 342
T AA EMR R+ + + ++ + + TFH + +L ++H + + F I
Sbjct: 70 TNKAAREMRSRLDELFNQNNQYINSRAMWVGTFHGLAHRLLKAHWQDADLPQNFQI---- 125
Query: 343 QQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQ 402
L ++++ ++KRI + + + + +A ++
Sbjct: 126 -----------LDSDDQLRLIKRIYQALNLDENKWPHKQAQWYI---------------- 158
Query: 403 YNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSC---NALDYHDLISCSV 459
+ K G ++ D +L+ Y C +D+ +++ +
Sbjct: 159 ---------NAQKDEGLRSRHIQETADPFVRTMLQIYRAYEEDCQRGGMVDFAEILLRAH 209
Query: 460 KLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFN 518
+L P + + Y+ + I+VDEFQDT+++QY+ L++LA +R+T VGDDDQSI+ +
Sbjct: 210 ELWLNKPHILEHYRQRFPFILVDEFQDTNSVQYAWLRMLAGKESRVTAVGDDDQSIYGWR 269
Query: 519 GADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGS 578
GA I F +DF + RL +NYRST I++AA+++I+HN R K + TD G
Sbjct: 270 GAKIENIQRFSQDFADTHIYRLEQNYRSTGNILKAANAVIKHNYGRLG-KELWTDGDKGD 328
Query: 579 KIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKI 638
I + +NE + FI+++I + A G A +IAILYR +V + A I
Sbjct: 329 PISLYAAYNEQDEARFIVERIQDWARKGHAK----KTIAILYRSNAQSRVLEEALLREAI 384
Query: 639 PFNIHGVA-FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKI 697
P+ I+G FY + ++ IA +R DD + RV + + +D I
Sbjct: 385 PYRIYGGQRFYDRLEIKNAIAYMRLISNRHDDAGFERVINT---PTRGIGGKTVDDIRLF 441
Query: 698 STIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVA 757
+ + CS +AA + K+ G + L +I+KL + I +
Sbjct: 442 AREQGCSLWTAAEQMLANKVLTA------RAGNALQSFLSLINKLAQDANEIDIHGDTPG 495
Query: 758 NMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQD 817
+ K ++E D G LL N+ Q ++ + ++ EE N +
Sbjct: 496 LDLIAKMVIE-------DTGLLLFHQNEKGEKGQARGENLQELITACRAFDAEEENEE-- 546
Query: 818 KKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
++ L+ F+D + E TQ + E++V L T+H +KGLE+ +VF+A E
Sbjct: 547 ----LSPLQQFLDTAALDAGE---TQADEFEDAVQLMTLHSAKGLEFPLVFLAGVEEGLF 599
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKE 934
P H+ + + +EEERRL YV +TRA +KLFI Y + N SRF+KE
Sbjct: 600 P--HKMSA---DDPDRLEEERRLCYVGITRAMEKLFISYAETRRLYGNETFNAVSRFVKE 654
Query: 935 IP 936
IP
Sbjct: 655 IP 656
>gi|116494556|ref|YP_806290.1| superfamily I DNA/RNA helicase [Lactobacillus casei ATCC 334]
gi|116104706|gb|ABJ69848.1| ATP-dependent DNA helicase PcrA [Lactobacillus casei ATCC 334]
Length = 751
Score = 226 bits (576), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 210/724 (29%), Positives = 328/724 (45%), Gaps = 108/724 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ +ND+Q EA P+LI+AG GSGK ++P NILA+TFT
Sbjct: 7 LKGMNDKQSEAVLA-TEGPVLIMAGAGSGKTRVLTHRIAYLVEEKHVNPWNILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+G +V A+++ +STFH+ +++ R +KL F I +Q
Sbjct: 66 AAREMRERVGKLVDAEIARDIWVSTFHALCVRILRRDIDKLGYNRAFTIADPAEQ----- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER- 408
+ +VK I D F ++ + S K E
Sbjct: 121 ----------LTLVKHILAD---------------FNLDPKRYDPKSILGAISSAKNELV 155
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D A +P F K+ A + Y LRS ALD+ DLI ++ L E
Sbjct: 156 DPQTYANEQANSP--FTKVV----AQVYAEYQKRLRSDQALDFDDLIMQTIVLFEKDKET 209
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDS 527
YQ ++ I VDE+QDT+ QY L+ +LA ++ + +VGD DQSI+ + GA++
Sbjct: 210 LAFYQRKFRYIHVDEYQDTNEAQYQLVHMLAEGYHNLCVVGDADQSIYGWRGANMQNILD 269
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F++D+ + I L +NYRST+ I+ AA+ +IQ+N R Q K + T+N G KI +
Sbjct: 270 FKQDYPKAQVILLEQNYRSTKTILSAANDVIQNNQNR-QAKTLWTENREGDKITYYRAQS 328
Query: 588 EDAQCAFIIDKI-LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
E + F+I +I E A N YG AILYR + + AF + IP+ + G
Sbjct: 329 ETDEAIFVIRRIEAEIADNH----RKYGDFAILYRTNAQSRAIEEAFVKSNIPYKMVGGH 384
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIR 701
FY +K +R +A R + DD + R+ E K+ + ++ ++ +
Sbjct: 385 KFYDRKEIRDALAYFRLVVNPEDDMSFNRIV-------NEPKRGIGNTSVEKLEAFANEH 437
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
S + AA + + I+G R QL + K MI +L R ++ A +
Sbjct: 438 DWSLLEAAANAELSPIAGK-ARGQLAKFGK------MIQQLGTRRKDLNVTKMMQAILED 490
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
YL RA + + + +L SV Q F + + N D D
Sbjct: 491 SGYLSTLRAAHNLEADTRIENLEELLSVTQ------------GFDSRYQPENEDSD---- 534
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
F+D+++E + ++ VTL T+H +KGLE+ +VF+ E PL
Sbjct: 535 -----IFVDFLAELALLSDQDDVEEDAQEVTLMTLHAAKGLEFPVVFLVGMEEGLFPLSR 589
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHH 938
+ + +EEERRL YV +TRA++KL++ M+ Q SRF++EI
Sbjct: 590 -----ASMDESELEEERRLAYVGITRAKQKLYLSNAYGRMLYGQRQNNPASRFIEEINPD 644
Query: 939 LREV 942
L EV
Sbjct: 645 LLEV 648
>gi|406905339|gb|EKD46832.1| hypothetical protein ACD_67C00052G0001 [uncultured bacterium]
Length = 738
Score = 226 bits (576), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 211/737 (28%), Positives = 338/737 (45%), Gaps = 122/737 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L LN+QQ EA P+L++AG GSGK + NILA+TFT
Sbjct: 4 LDGLNEQQREAVI-TTDGPMLLIAGAGSGKTKTLTHRVAYLIKNHHVPARNILAVTFTNK 62
Query: 290 AASEMRDRIGSIVGK-----------ATAKELTISTFHSFSLQLCRSHAEKLERTSEFLI 338
AA EM++R+ I+ A + TFH+ ++ RS E L F I
Sbjct: 63 AAQEMKERVMKILYPDADANYKYSLYGNADLPVLGTFHAICSKILRSEIEVLGYAKTFHI 122
Query: 339 YGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAML--FFSMS 396
Q+ +++KRI + F RA L ++ S
Sbjct: 123 VDDQDQQ---------------ILIKRILKEFEIDPQQFA-PRAILAAISKAKNELMSPE 166
Query: 397 SFKLCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLIS 456
F L + +E EI A Y L+ N LD+ D+I
Sbjct: 167 QFNLQSHGYYE----------------------EIVAKCYTMYQTRLKENNGLDFDDIIM 204
Query: 457 CSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIF 515
+V+LL FP V ++YQ + I+VDE+QDT+ QY L+ +LAS H + +VGDD QSI+
Sbjct: 205 FTVELLKNFPNVLEKYQKQFHYIMVDEYQDTNRAQYLLINLLASKHRNLCVVGDDWQSIY 264
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
F GADI +F KD+ K I L +NYRS++ I++AA +I N+ R KN+ T+
Sbjct: 265 KFRGADIKNILNFEKDYAEAKVIHLEQNYRSSQVILDAAYGVISKNINRKD-KNLWTEKE 323
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G + E +E + FI +I H +NG ++ +LYR + + F +
Sbjct: 324 EGHLVTSFEAADERDEAEFIASEIKAH-NNG-----TFKKFVVLYRTNAQSRTIEEIFLK 377
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
R IP+ I G+ FY++K V+ I+A LR D R E KR I +
Sbjct: 378 RSIPYRIIGGIKFYQRKEVKDIVAYLRLISNPTDMISLERAIN--------EPKRNIGDV 429
Query: 695 DKISTIRKCSFIS--AACDIFGAKISGTFKRSQLTQGRKVLLT-LEMISK---LVRREPS 748
T++K IS A + A + T Q + K+ + +E I+K V+R
Sbjct: 430 ----TLKKWIEISREAGLNYIEAGLQPTVIGDQSSAKNKLAGSKIEAIAKFCEFVKRMKE 485
Query: 749 ISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST--KFT 806
+ I S+++ + ++ V+ K+L+ D + + + +V + +S K+
Sbjct: 486 MQPRI-SLSDFI-------EKVFVESGYEKMLSADG---TEGEQRVENVRELISVAKKYD 534
Query: 807 AAKEE-GNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWD 865
KE +++ D I+ L AF++ ++ Q N+++V L T+H +KGLE+
Sbjct: 535 EIKEATASLETD---YIDTLSAFLEEVALASDVDNVDQ---NQDAVHLMTLHSAKGLEFP 588
Query: 866 IVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDAN 922
+VF+ E +P + +EEERRL+YV +TRA++K+++L+ + +
Sbjct: 589 VVFIVGLEEGILPHSRSLISS-----AEMEEERRLMYVGLTRAKEKIYLLFTRQRTLFGS 643
Query: 923 WQLLQPSRFLKEIPHHL 939
Q+ PSRFL++IP L
Sbjct: 644 TQMNSPSRFLEDIPEKL 660
>gi|418976708|ref|ZP_13524564.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK575]
gi|383351041|gb|EID28872.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK575]
Length = 763
Score = 226 bits (576), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 213/731 (29%), Positives = 338/731 (46%), Gaps = 119/731 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R+ + ++S+ K N D
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERS--------ILGTISNAK----NDLIDD 153
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
A+A + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 154 AAYAAQAG--------DMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ ++E
Sbjct: 266 EKDYPQAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRANDE 324
Query: 589 DAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
+ F+ I L + N + A+LYR + + A + IP+ + G
Sbjct: 325 LDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGT 379
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTI 700
FY +K +R IIA L D+ + R+ E KR ++ I + +
Sbjct: 380 KFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANM 431
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
+ S + A+ +I + I G +S VL E + +L SI+ ++ +V
Sbjct: 432 QNMSMLDASANIMLSGIKGKAAQSIWDFANMVLDLREQLDQL-----SITELVEAV---- 482
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
LE+ VD +LN L S + + ++ +FLS + +V +D+ G
Sbjct: 483 -----LEKTGYVD-----ILNVQATLESKAR--VENIEEFLSVT-KNFDDTSDVPEDETG 529
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 530 -LDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGMEENVFPLS 585
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLK 933
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 586 R-----AAEDQDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFIN 636
Query: 934 EIPHHLREVQA 944
EI L E Q
Sbjct: 637 EISSDLLEYQG 647
>gi|383775882|ref|YP_005460448.1| putative ATP-dependent DNA helicase [Actinoplanes missouriensis
431]
gi|381369114|dbj|BAL85932.1| putative ATP-dependent DNA helicase [Actinoplanes missouriensis
431]
Length = 811
Score = 226 bits (576), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 212/774 (27%), Positives = 345/774 (44%), Gaps = 132/774 (17%)
Query: 219 MKSSMEKTDTI---QTIKTQNMPDEYSK--------------YLQSLNDQQLEAACGDMS 261
M+ S E DT+ IK Q E S+ L LN Q +A S
Sbjct: 1 MRPSSEPADTLFSMPVIKAQEKHTEPSRPTSRPSPRRIDPESLLVGLNGPQRDAVTHSGS 60
Query: 262 TPLLIVAGPGSGK---------------GISPSNILAMTFTTAAASEMRDRIGSIVGKAT 306
PLLIVAG GSGK G+ P I+A+TFT AA EM++R+ +VG
Sbjct: 61 -PLLIVAGAGSGKTRVLTHRIAYLLAERGVHPGEIIAITFTNKAAGEMKERVAQLVGP-R 118
Query: 307 AKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVRLLENEKILVVKRI 366
A+ + +STFHS +++ R+ E + S F IY RR + +L+ E L KR
Sbjct: 119 ARLMWVSTFHSACVRILRAEHEHVGLKSTFSIYDADDSRRLM----QLVARELDLDPKRY 174
Query: 367 STDMLTTDGHFGYMRASLFMMNAMLFFSMSSFK--LCQYNKFERDGMDVAKASGKTPAEF 424
+ L +S+ K L + +F K K P E
Sbjct: 175 TARGLAA--------------------QVSNLKNELVEPEEF--------KQKAKGPNE- 205
Query: 425 RKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEF 484
R + A E Y LR +ALD+ D+I V L P + + Y+ ++ ++VDE+
Sbjct: 206 RAV-----AEAYELYQRRLREAHALDFDDIIMAVVHLFQAHPMIAEAYRRRFRHVMVDEY 260
Query: 485 QDTSAMQYSLLQILAS-------HNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKE 537
QDT+ QY L++ L + + +VGD DQSI++F GA I F +D+ +
Sbjct: 261 QDTNHAQYQLIRELVGTEGGEVEPSELCVVGDADQSIYAFRGATIRNILEFERDYPQART 320
Query: 538 IRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFI-- 595
I L +NYRST+ I+ AA+++I N R + K + +D G +I+ E A+ ++
Sbjct: 321 ILLEQNYRSTQTILSAANAVIDRNTSR-KPKRLWSDQGAGEQIVGYVADTEHAEADWVAR 379
Query: 596 -IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFYRKKVV 653
ID++ ++ P G +A+ YR +VF+ F +P+ + GV FY +K V
Sbjct: 380 EIDRLCDNHEVRP------GDVAVFYRTNAQSRVFEEVFIRVGLPYKVVGGVRFYERKEV 433
Query: 654 RAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH----IDKISTIRKCSFISAA 709
R +A LR + D RRV K+ + D ++ +S + SF A
Sbjct: 434 RDALAYLRAIVNEDDTVSVRRVLNT-------PKRGIGDRAEACVEALSNRDRLSFGQAL 486
Query: 710 CDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQR 769
A T + + ++L L +++ E + AV+ + + L+ +
Sbjct: 487 RHAKDAPGISTRAANSIGDFVRLLDDLRELTRTAPPEEVLEAVLQRSGLLSELEESLDPQ 546
Query: 770 AVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFI 829
D G++ N LQ L++ ++ + + + EEG + L F+
Sbjct: 547 -----DQGRVEN--------LQELVSVAREY-TERVESLAEEGEEQ------VATLAGFL 586
Query: 830 DYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVN 888
+ ++ + + + D++ VTL T+H +KGLE+ +VF++ + P +
Sbjct: 587 EQVALVADADQIPSDDPDHQGVVTLMTLHTAKGLEFPVVFLSGLEDGVFPHMRALG---- 642
Query: 889 EKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSRFLKEIPHHL 939
T +EEERRL YV +TRAR++L++ + + W Q PSRF E+P L
Sbjct: 643 -DNTELEEERRLAYVGITRARQRLYLSRAVTRSAWGQPQYNPPSRFTDELPTEL 695
>gi|422589633|ref|ZP_16664294.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330876458|gb|EGH10607.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv.
morsprunorum str. M302280]
Length = 669
Score = 226 bits (576), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 194/726 (26%), Positives = 327/726 (45%), Gaps = 125/726 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+AMTFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ + LT+STFH+ L + R +L F I+
Sbjct: 60 AAREMKERVGTLLKGGEGRGLTVSTFHNLGLNIIRKEHTRLGYKPGFSIFDETD------ 113
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
VK + TD++ + +S D
Sbjct: 114 -------------VKALMTDIMQKE------------------YSGD------------D 130
Query: 410 GMDVAK---ASGKT----PAEF----RKIGDEIGAAILENYNGILRSCNALDYHDLISCS 458
G+D K S K PAE R ++ A + +Y L++ NA+D+ DLI
Sbjct: 131 GVDEIKNMIGSWKNDLILPAEALENARNPKEQTAAIVYTHYQRTLKAYNAVDFDDLILVP 190
Query: 459 VKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSF 517
VKL P+V +++Q+ + ++VDE+QDT+A QY L+++L S N+ T+VGDDDQSI+++
Sbjct: 191 VKLFQEHPDVLEKWQNKVRYLLVDEYQDTNASQYLLVKLLIGSRNQFTVVGDDDQSIYAW 250
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GA + D+ + K + L +NYRST I+ A+ LI +N + K + ++ HG
Sbjct: 251 RGARPENLMLLKDDYPSLKVVMLEQNYRSTSRILRCANVLISNNPHAFE-KQLWSEMGHG 309
Query: 578 SKIIIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
+I + C NEDA+ + +I L ++ P Y AILYR K+ + +
Sbjct: 310 DEIRVIRCRNEDAEAERVAMEILTLHLRTDRP-----YSDFAILYRGNYQAKLIELKLQH 364
Query: 636 RKIPFNIHGV-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
++P+ + G +F+ ++ V+ ++A R + DD + RV + +E ++ +
Sbjct: 365 HQVPYRLSGGNSFFGRQEVKDLMAYFRLLVNPDDDNAFLRVIN---VPRREIGSTTLEKL 421
Query: 695 DKISTIRKCSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI 753
+T RK S +A +I G + + +L R + + V
Sbjct: 422 GNYATERKVSMYAATEEIGLGEHLDSRY-----------------TDRLQRFKRWMDGVR 464
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
A P L + V+D D L +++ Y +++V F +
Sbjct: 465 QQCAQNDPIAAL--RSMVMDIDYENWLRQNSSSEKAADYRMSNVW------FLIEALKNT 516
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+++D++G + + +A I + R+ + + D V + T+H SKGLE+ VF+
Sbjct: 517 LEKDEEGGMTIEEA-IGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGME 575
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSR 930
E +P + ++EEERRL YV +TRAR+ L + + + PSR
Sbjct: 576 EEILPHRSSI------EADTIEEERRLAYVGITRARQTLAFTFAAKRKQYGEIIDCAPSR 629
Query: 931 FLKEIP 936
FL E+P
Sbjct: 630 FLDELP 635
>gi|323499661|ref|ZP_08104629.1| ATP-dependent DNA helicase Rep [Vibrio sinaloensis DSM 21326]
gi|323315262|gb|EGA68305.1| ATP-dependent DNA helicase Rep [Vibrio sinaloensis DSM 21326]
Length = 672
Score = 226 bits (575), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 201/734 (27%), Positives = 353/734 (48%), Gaps = 97/734 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G +GK AK L +STFH+ L + + + L S F ++
Sbjct: 62 EMKERVGQTLGKNEAKGLMVSTFHTLGLTIIKREYKALGLKSGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R+ L ++S++K N
Sbjct: 110 ---DQDQLALLKELTEKQL--DGDKDLLRS--------LLSAISNWK----NDMLTPDQV 152
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
A+A G+ F A E Y +++ NALD+ DLI+ V LL T EV Q +
Sbjct: 153 KAQAKGEQQQLF--------AFCFEMYQKQMKAYNALDFDDLIALPVLLLRTNEEVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQ-ILASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L++ I+ R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QNRIRYLLVDEYQDTNTSQYELVKLIVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
+ + + I+L +NYRST I+ AA+ LI +N + K++ ++ G K+ + NE+ +
Sbjct: 265 YPSLRLIKLEQNYRSTSRILRAANILIANNPHVYE-KSLFSEIPDGEKLKVLLAKNEEHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +++ H + Y AILYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AERVTGELIAHKF---LNRTEYKDYAILYRGNHQSRLIEKSLMQNRVPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ +E ++ + + +R S A+
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PRREIGPVTLEKLGSYANMRGKSLFEAS- 436
Query: 711 DIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRA 770
F + + L R+ L I+ R ++ AV + V ++ + +L E +
Sbjct: 437 --FELGLEQSLSGRGLENLRRFTAWLVKIADQAERGDTVEAVRSLVRDINYEDWLYETSS 494
Query: 771 VVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAFI 829
+ + +V+D S + A EG N DQ++K +K +
Sbjct: 495 SP---------------KAAEMRMKNVSDLYS--WIVADLEGDNYDQEEK----TIKEVV 533
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
++ R+ R + D+ ++V L T+H SKGLE+ V++ + E +P H+ +++E
Sbjct: 534 QRLTLRDMME-RGEEDDDSDAVQLMTLHASKGLEFPYVYLIGSEEGILP--HQ--TSIDE 588
Query: 890 KGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAEQ 946
+VEEERRL+YV +TRA+++L F + +L++P SRFL E+P E +A +
Sbjct: 589 --DNVEEERRLMYVGITRAQRELTFTMCKERRQFGELIKPTQSRFLDELPFDDVEWEATK 646
Query: 947 SVQDQHENIPEGTA 960
Q E + +G A
Sbjct: 647 KPQSAEERMAKGQA 660
>gi|359410306|ref|ZP_09202771.1| UvrD/REP helicase [Clostridium sp. DL-VIII]
gi|357169190|gb|EHI97364.1| UvrD/REP helicase [Clostridium sp. DL-VIII]
Length = 754
Score = 226 bits (575), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 211/732 (28%), Positives = 352/732 (48%), Gaps = 124/732 (16%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q E A + +LI+AG GSGK I+P +ILA+TFT A+
Sbjct: 7 LNKEQYEGAT-TIDGQVLILAGAGSGKTRVLTHRIAHMIEDLNIAPYSILAITFTNKASK 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM+DR+ +++G+ A+ + ISTFHS +++ R +K+ S F IY Q+ + E +
Sbjct: 66 EMKDRVKALIGE-RAENMWISTFHSTCVRILRREIDKIGYKSSFTIYDSSDQKTLVKECM 124
Query: 353 RLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
+ L N+K + + I G G + + S+ SF L
Sbjct: 125 KSLNINDKDITEQEIL-------GKIGKAKDKMQ--------SVRSFML----------- 158
Query: 412 DVAKASGKTPAEFR--KIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ A FR KI D + E Y L+ NALD+ DLI +V+L + PEV
Sbjct: 159 -------ENEANFREKKIAD-----VYEMYQKRLKENNALDFDDLIFKTVELFKSNPEVL 206
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ+ +K I+VDE+QDT+ QY L+++LA+ + I +VGDDDQ I+ + GADI F
Sbjct: 207 EFYQNKFKYIMVDEYQDTNGAQYQLVKLLAAKYKNICVVGDDDQCIYQWRGADIKNILDF 266
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K I+L +NYRS I+ AA+ +I +N R + K ++T+ G+KI I + +
Sbjct: 267 EKDYPGAKVIKLEQNYRSKGNILNAANVVIVNNSNR-KSKVLRTEQEAGNKIKIYRAYAD 325
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVAF 647
+ F+ +IL+ + +Y AILYR ++F+ + R + IP+ I G F
Sbjct: 326 SDEGDFVGKQILDIKNKESK---NYNDFAILYRTNAQSRIFEESLRRKGIPYKIVGGTRF 382
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y +K ++ I+A L+ + DD RR+ + ++ + + + +T + +
Sbjct: 383 YDRKEIKDILAYLKVLVNPQDDISIRRIIN---VPKRSIGDATVAKVQEFATNFELNLWD 439
Query: 708 AACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV--ITSVANMVPQKYL 765
+ ++ G LT IS + EP ++ + + ++ VP L
Sbjct: 440 SLSEVRGIST----------------LTARNISCI---EPFVALMENLMELSETVPVSVL 480
Query: 766 LEQRAVVDFDGGKLLNEDNDLRSV-----LQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
+E + D K L E N++ L+ L++D DF E+ N D+
Sbjct: 481 IES-ILKDTGYMKQLQESNEIEDKSRIENLKELVSDAVDF---------EKSNEDKS--- 527
Query: 821 CINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
L A+++ +S ++T+ + ++++ L TIH +KGLE+ +VF+ P
Sbjct: 528 ----LAAYLERVSLVQDTDKI----EEEDDAIVLMTIHSAKGLEFPVVFMVGMENGIFP- 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW--QLLQP-SRFLKEIP 936
A E + +EE RRL YV +TRA++ LF+ + + + P S F+ EI
Sbjct: 579 ----GNASFESESEMEESRRLCYVGITRAKETLFMTSAEVRRVFGKTMAYPQSDFINEIK 634
Query: 937 HHLRE-VQAEQS 947
L+E V E+S
Sbjct: 635 PELKEYVSGEKS 646
>gi|395237044|ref|ZP_10415157.1| DNA helicase II / ATP-dependent DNA helicase [Turicella otitidis
ATCC 51513]
gi|394487741|emb|CCI83245.1| DNA helicase II / ATP-dependent DNA helicase [Turicella otitidis
ATCC 51513]
Length = 954
Score = 226 bits (575), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 200/742 (26%), Positives = 337/742 (45%), Gaps = 117/742 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
LQ LND+Q AA LLIVAG GSGK G+ P +LA+TFT
Sbjct: 179 LQGLNDEQ-RAAVTHSGGSLLIVAGAGSGKTAVLTRRIAYVMARRGVQPGQVLAITFTNK 237
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EMR+R+ +VG A+ + ++TFHS +++ RS A+ +E S F IY RR
Sbjct: 238 AAAEMRERVAELVGP-QARRMWVATFHSVCVRILRSQAQLVEGLNSNFSIYDADDSRRLF 296
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
+ LE L K+ + L+ ++S+ K
Sbjct: 297 GMIAKDLE----LDTKKFTPRTLSN--------------------AVSNLK--------- 323
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
+ + + + + E R D+ A + + Y LR NALD+ DLI V + S+ PEV
Sbjct: 324 NELVGPEEAARRADETRNPFDKAVAEVFDEYQRRLRRANALDFDDLIGEVVGIFSSHPEV 383
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS---------HNRITIVGDDDQSIFSFNG 519
+ Y+ ++ ++VDE+QDT+ QY L+ L + + +VGD DQSI++F G
Sbjct: 384 AEYYRRRFRHVLVDEYQDTNHAQYRLIAELVGGRGEDSAVPSSELCVVGDSDQSIYAFRG 443
Query: 520 ADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSK 579
A I + F +D+ + I L +NYRST+ I+ AA+++I N R + KN+ T G
Sbjct: 444 ATIRNIEEFERDYPQAETILLEQNYRSTQTILSAANAVIARNDNRRE-KNLWTALGEGEP 502
Query: 580 IIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIP 639
I NE + +I +I + A+ G YG +A++YR + + + +P
Sbjct: 503 IRGYVADNEHDEARYIASEIEDLAAKG----TPYGDMAVMYRTNNASRAIEDVLMRSGVP 558
Query: 640 FNI-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIS 698
+ I G FY +K +R +IA LR D P V +R+++ +
Sbjct: 559 YRIVGGTRFYERKEIRDVIAYLRVL-----DNPDDVV----------SMRRIVNTPKRGI 603
Query: 699 TIRKCSFISAACDIFGAKIS--------------GTFKRSQLTQGRKVLLTLEMISKLVR 744
R F+S + G + G R+ + + ++L L S+ +
Sbjct: 604 GDRAVGFVSLHAENHGVSFAEALDAAAHDEVPMLGARGRNAIARFTELLDGLRRASRELV 663
Query: 745 RE----PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDF 800
E P + ++T + + LE D L+ N+L SV + ++ +
Sbjct: 664 DEDTGIPRLGELVTEILEQTGYRAQLENSN--DVQDASRLDNLNELVSVAREFSSEAANL 721
Query: 801 LSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSK 860
A + ++ + L+AF++ +S + + VTL T+H +K
Sbjct: 722 ------AGLGDAPEPEEGEAPPGSLQAFLERVS--LVADADQLPDEGQGLVTLMTLHTAK 773
Query: 861 GLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD 920
GLE+ +VF+ + + P + ++K + EERRL YV +TRA+++L++ ++
Sbjct: 774 GLEFPVVFLPGWEDGQFPHLRALG---DQK--QLAEERRLAYVGITRAKRRLYLSRALVR 828
Query: 921 ANW--QLLQP-SRFLKEIPHHL 939
++W + P SRFL++IP L
Sbjct: 829 SSWGSPVTNPASRFLQDIPEDL 850
>gi|225568813|ref|ZP_03777838.1| hypothetical protein CLOHYLEM_04892 [Clostridium hylemonae DSM
15053]
gi|225162312|gb|EEG74931.1| hypothetical protein CLOHYLEM_04892 [Clostridium hylemonae DSM
15053]
Length = 743
Score = 226 bits (575), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 157/489 (32%), Positives = 254/489 (51%), Gaps = 71/489 (14%)
Query: 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAA 290
++LN+QQ EA PLLI+AG GSGK G++P NILA+TFT A
Sbjct: 5 ETLNEQQQEAVY-HTEGPLLILAGAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNKA 63
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIE 350
A EMR+R+ +IVG + + + +STFHS +++ R H +KL + F IY Q+ + +
Sbjct: 64 AGEMRERVDNIVGFGS-ESIWVSTFHSTCVRILRRHIDKLGYDTNFTIYDSDDQKTLMKD 122
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
RLL+ + + +R L ++SS
Sbjct: 123 VCRLLQIDTKIYKER------------------------TLLGAVSS------------- 145
Query: 411 MDVAKASGKTPAEFR--KIGD---EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
AK TP E+R GD + A + E Y LR+ NALD+ DL+ +V+L T
Sbjct: 146 ---AKDELITPEEYRIRAEGDYNKQKIAQVYEEYEKQLRANNALDFDDLLVKTVQLFQTQ 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISG 524
++ YQ+ ++ I+VDE+QDT+ +Q+ L++ILAS R + +VGDDDQSI+ F GA+I
Sbjct: 203 ADILDYYQERFRYIMVDEYQDTNTVQFELIRILASKYRNLCVVGDDDQSIYKFRGANIKN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+F + + + K I+L +NYRST I+ AA+++I++N R + K + TDN G KI ++
Sbjct: 263 ILNFEQVYEDAKVIKLEQNYRSTSNILNAANAVIRNNYGR-KDKTLWTDNGEGDKIHFRQ 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
+ + +I+ I E +G C+Y AILYR ++F+ F IP+ +
Sbjct: 322 FDSAYDEAEYIVGDIREQVDSGG---CTYNDNAILYRTNAQSRMFEEKFVTANIPYKVVG 378
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
GV FY ++ ++ +++ L+T G DD RR+ + ++ I+ + + ++ R
Sbjct: 379 GVNFYARREIKDLLSYLKTVDNGQDDLAVRRIVN---VPKRGIGLTSINRVQEYASSRGI 435
Query: 704 SFISAACDI 712
F A C +
Sbjct: 436 GFYEALCAV 444
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 846 DNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAM 905
++ + V L T+H +KGLE+ V++A + P + + VEEERRL YV +
Sbjct: 549 ESSDYVVLMTLHSAKGLEFPRVYLAGLEDGIFP---SYMTITADDPEEVEEERRLCYVGI 605
Query: 906 TRARKKLFILYV---MMDANWQLLQPSRFLKEIPHHL 939
TRA+++L + M+ Q + SRFLKEIP L
Sbjct: 606 TRAKEELTLTCARRRMIRGETQYNKMSRFLKEIPMDL 642
>gi|294778328|ref|ZP_06743753.1| putative ATP-dependent helicase PcrA [Bacteroides vulgatus PC510]
gi|294447835|gb|EFG16410.1| putative ATP-dependent helicase PcrA [Bacteroides vulgatus PC510]
Length = 796
Score = 226 bits (575), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 214/741 (28%), Positives = 350/741 (47%), Gaps = 121/741 (16%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFT 287
+ YL+ LN+ Q A + P L++AG GSGK G +P +ILA+TFT
Sbjct: 2 TNYLEELNESQRNAVLYN-EGPSLVIAGAGSGKTRVLTYKIAYLLERGYTPWSILALTFT 60
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM++RI VG A+ L + TFHS ++ R ++ + TS F IY +
Sbjct: 61 NKAAREMKERIARQVGD-QARYLWMGTFHSIFSRILRCESQSIGFTSNFTIYDSSDSKS- 118
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHF--GYMRASLFMMNAMLFFS---MSSFKLCQ 402
++K I +M D + G ++A + L F S+ +L Q
Sbjct: 119 --------------LIKSIVKEMQLDDKTYKPGLIQARISNAKNHLVFPDAYASNAELYQ 164
Query: 403 YNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLL 462
Y+ + K PA I Y R +A+D+ DL+ + L
Sbjct: 165 YD-----------VNAKVPAT---------RDIYRRYWERCRQSDAMDFDDLLVYTYLLF 204
Query: 463 STFPEVFQEYQDSWKAIIVDEFQDTSAMQYSL-LQILASHNRITIVGDDDQSIFSFNGAD 521
+PE+ ++Y + ++ ++VDE+QDT+ Q+S+ LQ+ H R+ +VGDD QSI+SF GA+
Sbjct: 205 RDYPEICRKYAEQFRYVLVDEYQDTNFAQHSIVLQLTREHQRVCVVGDDAQSIYSFRGAN 264
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII 581
I F + + K +L +NYRST+ IV AA+SLI+ N ++ + K V ++ + G I
Sbjct: 265 IDNILKFTQLYKGAKLFKLEQNYRSTQTIVCAANSLIEKNSEQIR-KEVFSEKAKGEPIG 323
Query: 582 IKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN 641
+ +++ + + +++++ S SY AILYR ++F+ A R+R +P+
Sbjct: 324 VFNAYSDVEEGEIVANQMVKLRSR---EHYSYNDFAILYRTNAQSRIFEEALRKRSLPYK 380
Query: 642 IH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTI 700
I+ G++FY++K ++ +I+ R + D+ ++RV R I +T+
Sbjct: 381 IYGGLSFYQRKEIKDVISYFRLAVNPNDEEAFKRVLNY--------PARGIGD----TTL 428
Query: 701 RKCSFISAACDIFGAKIS-GTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANM 759
K I AA +S L G + M +KL + + I V
Sbjct: 429 NKV--IDAAAQ---HHVSLWMVLEEPLAYGLNI--NKGMHTKLQGFRELVESFIVEV--- 478
Query: 760 VPQKYLLEQRAVVDFDGGKLLNE---DNDLRSV-----LQYLLADVTDFLSTKFTAAKEE 811
P+K E A++ G ++NE ND ++ ++ L+ + DF +T+ +EE
Sbjct: 479 -PKKNAYELGAMIVRQSG-IMNEIYQSNDPENLSRQENIEELINGMHDFCATR----EEE 532
Query: 812 GNVDQDKKGCINVLKAFIDYISERE--TEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFV 869
GN N+L D++SE T+ + D E +TL TIH +KGLE+ VFV
Sbjct: 533 GNE--------NIL--LTDFLSEVSLLTDQDNEKEGDAE-KITLMTIHSAKGLEFKNVFV 581
Query: 870 AKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ-- 927
E P N +EEERRL YVA+TRA + ++ + + ++
Sbjct: 582 VGMEENLFPSALSLNSY-----KELEEERRLFYVAITRAEEHCYLSFAKSRFKYGKMEFS 636
Query: 928 -PSRFLKEIP-HHLREVQAEQ 946
PSRFLK+I H L+ Q EQ
Sbjct: 637 SPSRFLKDIDVHFLKLPQEEQ 657
>gi|261250075|ref|ZP_05942652.1| ATP-dependent DNA helicase Rep [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|417955938|ref|ZP_12598938.1| ATP-dependent DNA helicase Rep [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260939579|gb|EEX95564.1| ATP-dependent DNA helicase Rep [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342811699|gb|EGU46730.1| ATP-dependent DNA helicase Rep [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 671
Score = 226 bits (575), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 202/728 (27%), Positives = 345/728 (47%), Gaps = 113/728 (15%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN Q +AA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPNQ-DAAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G +GK +K L +STFH+ L + + + L S F ++ Q + E
Sbjct: 62 EMKERVGQTLGKNESKGLMVSTFHTLGLNIIKREYKALGLKSGFSLFDDQDQMALLKELT 121
Query: 353 -RLLENEKILVVKRIST------DMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNK 405
+ L+ +K L+ + +ST DMLT D
Sbjct: 122 EKQLDGDKDLLRQLLSTISNWKNDMLTPDQ------------------------------ 151
Query: 406 FERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
AKA K + ++ A E Y +++ NALD+ DLIS V LL T
Sbjct: 152 --------AKAQAKGEQQ------QLFAFCFEMYQKQMKAYNALDFDDLISLPVLLLRTN 197
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQ-ILASHNRITIVGDDDQSIFSFNGADISG 524
EV Q +Q+ + ++VDE+QDT+ QY L++ I+ R+T+VGDDDQSI+S+ GA
Sbjct: 198 EEVRQRWQNRIRYLLVDEYQDTNTSQYDLVKLIVGERGRLTVVGDDDQSIYSWRGAKPQN 257
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+D+ N + I+L +NYRST I+ AA+ LI +N K++ ++ G K+ +
Sbjct: 258 LVLLGEDYPNLRLIKLEQNYRSTSRILRAANILIANN-PHVYDKSLFSEIPDGEKLKVLL 316
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH- 643
NE+ + + +++ H + Y A+LYR ++ + + + ++P+ +
Sbjct: 317 AKNEEHEAERVTGELIAHKF---LNRTEYKDYAVLYRGNHQSRLIEKSLMQNRVPYKLSG 373
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
G +F+ + ++ I+A LR + DD + R+ +E ++ + + +R
Sbjct: 374 GTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNT---PRREIGPVTLEKLGSYANMRGK 430
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
S A+ F + T L R+ L I+ R ++ AV + V ++ +
Sbjct: 431 SLFEAS---FEMGLEQTLSGRGLENLRRFTAWLVKIADQAERGDTVEAVRSLVRDINYED 487
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCI 822
+L E A + + +V+D S + A EG N DQ++K
Sbjct: 488 WLYETSASP---------------KAAEMRMKNVSDLYS--WIVADLEGDNYDQEEK--- 527
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+K + ++ R+ R + ++ ++V L T+H SKGLE+ V++ + E +P H+
Sbjct: 528 -TIKEVVQRLTLRDMME-RGEEDEDSDAVQLMTLHASKGLEFPYVYLIGSEEGILP--HQ 583
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHL 939
+++E +VEEERRL+YV +TRA+++L F + +L++P SRFL E+P
Sbjct: 584 --TSIDE--DNVEEERRLMYVGITRAQRELTFTMCKERRQFGELIKPTQSRFLDELPFD- 638
Query: 940 REVQAEQS 947
+V+ EQ+
Sbjct: 639 -DVEWEQT 645
>gi|315652267|ref|ZP_07905259.1| ATP-dependent helicase PcrA [Lachnoanaerobaculum saburreum DSM
3986]
gi|315485390|gb|EFU75780.1| ATP-dependent helicase PcrA [Lachnoanaerobaculum saburreum DSM
3986]
Length = 733
Score = 226 bits (575), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 209/751 (27%), Positives = 349/751 (46%), Gaps = 132/751 (17%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAAS 292
LND+Q +A PLL++AG GSGK I P NI+A+TFT AA
Sbjct: 8 LNDKQKQAVF-TTEGPLLLLAGAGSGKTGVLMHRIAYLINEKHIDPYNIMAITFTNKAAK 66
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++RI +++G + + TFHS ++ R +K+ + F IY QR + +
Sbjct: 67 EMKERITNLIG-GDGNFVWVMTFHSSCVRFLRRFIDKIGFDNNFTIYDSDDQRTLMKKIF 125
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ EN+ + R+ + RA L ++++ C
Sbjct: 126 K--END---INSRVYKE-----------RAVLNIISS-----------C----------- 147
Query: 413 VAKASGKTPAEFRKIGD---EIGAA-ILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
K +P E+ K E GAA I E Y L+ NALD+ DLI SV+L P+V
Sbjct: 148 --KNELISPVEYMKSATDRYEKGAARIYEIYQSTLKKNNALDFDDLICRSVELFENCPDV 205
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDS 527
YQ+ ++ I+VDE+QDT+ Q+ L+ +L+ + I +VGDDDQSI+ F GA+I S
Sbjct: 206 LDYYQNRFRYIMVDEYQDTNTAQFKLIYLLSQKYKNICVVGDDDQSIYKFRGANIENILS 265
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F F N + I+L +NYRST I+ AA+++I++N R K++ TD G+ I +++ N
Sbjct: 266 FEDKFENVEVIKLEQNYRSTENILNAANAVIKNNRGRKN-KSLWTDGVTGANIELRQFAN 324
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
DA+ FII I A++ ++ A+LYR ++ + +P+ + GV
Sbjct: 325 ADAEADFIIKDIKAKAND------NFKDFAVLYRTNAQSRLLEERCVTLGVPYQLVGGVN 378
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFI 706
FY++K ++ ++A L+T G DD R+ L ++ I + + S
Sbjct: 379 FYQRKEIKDVLAYLKTIANGSDDIALLRIIN---LPKRGIGATTIAKVADYANENGISLY 435
Query: 707 SA--ACDIFG-AKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
A C+ G K + K+ + + E K+ ++ ++ANM+ +
Sbjct: 436 DAMTVCENIGIGKAADKIKKF-------IAMIEEFRDKVAKK--------ANIANMIEE- 479
Query: 764 YLLEQRAVVD--FDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
LL++ ++ +D G++ E + ++ L+ D+ + + EE ++ D
Sbjct: 480 -LLDKTGYIESLYDEGEIEGESR--KENIEELVNKSVDYEDGELSLFLEEVSLVAD---- 532
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
ID + E N + +TL T+H +KGLE+D V++A E P
Sbjct: 533 -------IDRMDE------------NADRITLMTLHGAKGLEFDTVYLAGMEEGLFP--- 570
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHH 938
+ + +EEERRL YV +TRA+K L + M++ + SRF+ EIP
Sbjct: 571 --SAMSSISREDLEEERRLAYVGITRAKKNLILTSAKQRMINGETRYSLLSRFVNEIPRD 628
Query: 939 LREVQAEQSVQDQHENIPEGTAQFTINLPRE 969
L ++ + D + + T + LP E
Sbjct: 629 L----LDKHILDTEKKYTQRTYSYEEALPWE 655
>gi|307565702|ref|ZP_07628171.1| putative ATP-dependent helicase PcrA [Prevotella amnii CRIS 21A-A]
gi|307345528|gb|EFN90896.1| putative ATP-dependent helicase PcrA [Prevotella amnii CRIS 21A-A]
Length = 845
Score = 226 bits (575), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 214/729 (29%), Positives = 341/729 (46%), Gaps = 117/729 (16%)
Query: 245 LQSLNDQQLEAA--CGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTT 288
L LN Q EA C P L+VAG GSGK G+ P NILA+TFT
Sbjct: 9 LSELNPHQREAVEYC---DGPSLVVAGAGSGKTRVLTYKIAYLLESGLKPWNILALTFTN 65
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA EM+DRI I ++ A + + TFHS ++ R ++ + S F IY R
Sbjct: 66 KAAREMKDRIAKITNQSDANRIYMGTFHSIFSRILRKESQYIGYNSSFTIYDESDSRS-- 123
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAML-FFSMSSFKLCQYNKFE 407
LL+N ++K + D ++ +N + F SM+ L +K+E
Sbjct: 124 -----LLKN----IIKVMGYD------------EKVYKLNMVHNFISMAKNHLITADKYE 162
Query: 408 RDGMDVAK-ASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
+D + + + P + +I + Y + NA+D+ ++ + L
Sbjct: 163 QDKAAIDRDKQCRMPYVY---------SIYKAYEARCKQANAMDFDSILVNTYVLFRDNE 213
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLL-QILASHNRITIVGDDDQSIFSFNGADISGF 525
+V +Y ++ I+VDE+QDT+ Q +++ Q++ H I +VGDD QSI+SF GA+I
Sbjct: 214 DVRNKYAKLFEYILVDEYQDTNYAQVAIITQLVNIHQHICVVGDDYQSIYSFRGANIDNI 273
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
+F+ F + + +L RNYRST+ IV+AA+SL++HN + K+V + GSK+ K C
Sbjct: 274 LNFKNIFKDVQTFKLERNYRSTQFIVKAANSLMKHNEHQIS-KDVYSQEEEGSKLQYKPC 332
Query: 586 HNEDAQCAFIIDKILE---HASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI 642
++ D + A ++ K L+ H N SY AILYR + F+ FR + IP+ I
Sbjct: 333 YS-DKEEAIVVAKELQRIKHIDN-----ASYSDFAILYRTNAQSRTFEDEFRRQSIPYKI 386
Query: 643 -HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
G++FY++K ++ IIA R + D+ +RR+ + K I+ I ++
Sbjct: 387 VGGLSFYQRKEIKDIIAYFRLIVNNNDEEAFRRIIN---YPARGIGKTTIEKIIACASEN 443
Query: 702 KCSFISAACDI--FGAKI-SGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
S + +G K+ SGT L++ + +L +I+ V R + A
Sbjct: 444 MVSLWQVITNPLQYGLKVNSGT-----LSKINEFIL---LINSFVARLTTTDA------- 488
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSV-----LQYLLADVTDFLSTKFTAAKEEGN 813
YLL + V+ + ++D S+ L+ L+ + +F+ T A+EE
Sbjct: 489 -----YLLGKDIVMQSKISNDIYSNSDTESLSKQENLEEFLSAMQEFVDT----AREENR 539
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
D NV DY+ E + D+ VT+ TIH +KGLE+ VF+
Sbjct: 540 ED-------NVF--LTDYLQEIALYSDNDKTDDDSPKVTMMTIHAAKGLEYPTVFIVGLE 590
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSR 930
E P N +EEERRLLYVA+TRA + I + +Q PSR
Sbjct: 591 ENIFPSPMSANSR-----REIEEERRLLYVAITRAGRHCIITNAKNRFRYGAMQFDTPSR 645
Query: 931 FLKEIPHHL 939
F+K+I +L
Sbjct: 646 FIKDIDPNL 654
>gi|228474096|ref|ZP_04058837.1| ATP-dependent DNA helicase PcrA [Capnocytophaga gingivalis ATCC
33624]
gi|228274610|gb|EEK13451.1| ATP-dependent DNA helicase PcrA [Capnocytophaga gingivalis ATCC
33624]
Length = 772
Score = 226 bits (575), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 152/451 (33%), Positives = 238/451 (52%), Gaps = 57/451 (12%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
YL LN+ Q A ++++AG GSGK G+ P NILA+TFT
Sbjct: 3 YLNELNEAQ-RAPVVHKDGAVMVIAGAGSGKTRVLTYRIAYLIQQGVDPFNILALTFTNK 61
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR--- 346
AA EM++RIG IVG + A+ L + TFHS ++ R A KL +F IY +R
Sbjct: 62 AAREMKERIGRIVGPSEARNLWMGTFHSVFARILREEASKLGFPRDFTIYDQQDSQRLIS 121
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
AII+ + L ++++ K+I++ R S + N ++ ++ +
Sbjct: 122 AIIKEMGL--DKEVYKYKQIAS------------RISSYKNN---LITVKAY-------Y 157
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
E + A A K P ++GD I NY A+D+ DL+ + +LL+ FP
Sbjct: 158 ENPELQEADAMAKRP----RLGD-----IYANYVDRCFKAGAMDFDDLLLRTNELLNVFP 208
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGF 525
EV +YQ ++ I+VDE+QDT+ QY +++ LA I +VGDD QSI++F GA+I
Sbjct: 209 EVLAKYQHRFRYILVDEYQDTNHSQYLIVRALADRFQNICVVGDDAQSIYAFRGANIDNI 268
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
+F+KD+ N RL +NYRST+ IVEAA+++I+HN R + K V TDN G++I +
Sbjct: 269 FNFQKDYPNVGVYRLEQNYRSTKNIVEAANNVIEHNKARLE-KVVWTDNESGNRIKVHRS 327
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-G 644
+ + F+ I E A YG+ A+LYR + + A R+R IP+ I+ G
Sbjct: 328 PTDADEGRFVAGTIFESAMQ---EQLPYGNFAVLYRTNSQSRAIEDALRKRDIPYRIYGG 384
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRV 675
++FY++K ++ I+A R + D+ +RV
Sbjct: 385 LSFYQRKEIKDILAYFRLVINENDEEALQRV 415
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 8/93 (8%)
Query: 846 DNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAM 905
++EN V+L TIH +KGLE+ VF+ E P + T +EEERRL YVA+
Sbjct: 559 EDENRVSLMTIHLAKGLEFPHVFIVGMEEDLFP-----SALSQNTRTELEEERRLFYVAL 613
Query: 906 TRARKKLFILYVMMDANWQLL---QPSRFLKEI 935
TRA K+ ++ Y W L +PSRF+ EI
Sbjct: 614 TRAEKQAYLTYTESRYRWGKLMDAEPSRFIDEI 646
>gi|94994523|ref|YP_602621.1| DNA helicase II [Streptococcus pyogenes MGAS10750]
gi|94548031|gb|ABF38077.1| DNA helicase II [Streptococcus pyogenes MGAS10750]
Length = 772
Score = 226 bits (575), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 204/724 (28%), Positives = 331/724 (45%), Gaps = 114/724 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q +A PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAQA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ K+ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKERALSL--NPATKDTLIATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+L+ I K +L T S + L +E
Sbjct: 121 --KRILKQLNIDPKKWNERSILGT-------------------ISNAKNDLLDEKGYEAQ 159
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D+ +I A + Y LR ALD+ DLI +++L P+V
Sbjct: 160 AADMYS--------------QIVARCYKAYQEELRRSEALDFDDLIMMTLRLFDANPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 AYYQQRYQYIHVDEYQDTNHAQYQLIKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + K + L NYRST+ I++AA+ +I +N R + K + T N+ G +++ ++E
Sbjct: 266 EKDYPDAKVVLLEENYRSTKKILQAANDVINNNRNR-RPKKLWTQNADGEQLVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASIC-SYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
+ F+ I SN + ++ A+LYR + + A + IP+ + G
Sbjct: 325 RDEAVFVASTI----SNMSQELGKNFKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTK 380
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIRK 702
FY +K +R +IA L D+ + R+ E K+ V +D + + +
Sbjct: 381 FYSRKEIRDLIAYLTIVANPADNISFERIV-------NEPKRGVGPGTLDKLRQFAYESD 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + AA ++ + + G + + ++ L I +R++ IT +A
Sbjct: 434 QSLLEAASNLLMSPLKG--------KAAQAIMDLANILGQLRQDLD-QMSITDLA----- 479
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
+ LLE+ +D L N L S Q + ++ +FLS + + ++D+ G
Sbjct: 480 EALLEKTGYLDS-----LRLQNTLES--QARIENIEEFLSVTKNFDESSASQEEDETGVD 532
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ + D +T+ + + + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 533 RLGRFLNDLALIADTDDSQAEAAE----VTLMTLHAAKGLEFPVVFLIGMEEGVFPLSR- 587
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
+E +EEERRL YV +TRA + LF M +AN + L +P+RFLKEI
Sbjct: 588 ----ASEDPDELEEERRLAYVGITRAEEVLF----MTNANTRTLFGKSSYNRPTRFLKEI 639
Query: 936 PHHL 939
L
Sbjct: 640 SEEL 643
>gi|408401716|ref|YP_006859679.1| DNA helicase II [Streptococcus dysgalactiae subsp. equisimilis
RE378]
gi|407967944|dbj|BAM61182.1| DNA helicase II [Streptococcus dysgalactiae subsp. equisimilis
RE378]
Length = 772
Score = 225 bits (574), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 204/724 (28%), Positives = 331/724 (45%), Gaps = 114/724 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q +A PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAQA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R ++ K+ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKER--ALALNPATKDTLIATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+L+ I K +L T S + L +E
Sbjct: 121 --KRILKQLNIDPKKWNERSILGT-------------------ISNAKNDLLDEKGYEAQ 159
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D+ +I A + Y LR ALD+ DLI +++L P+V
Sbjct: 160 AADMYS--------------QIVARCYKAYQEELRRSEALDFDDLIMMTLRLFDANPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 AYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + K + L NYRST+ I++AA+ +I +N R + K + T N+ G +++ ++E
Sbjct: 266 EKDYPDAKVVLLEENYRSTKKILQAANDVINNNRNR-RPKKLWTQNADGEQLVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASIC-SYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
+ F+ I SN I ++ A+LYR + + A + IP+ + G
Sbjct: 325 RDEAVFVASTI----SNMAQEIGKNFKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTK 380
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIRK 702
FY +K +R +IA L D+ + R+ E K+ V +D + + +
Sbjct: 381 FYSRKEIRDLIAYLTIVANPADNISFERIV-------NEPKRGVGPGTLDKLRQFAYESD 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + AA ++ + + G + + ++ L I +R++ IT +A
Sbjct: 434 QSLLEAASNLLMSPLKG--------KAAQAIMDLANILGQLRQDLD-QMSITDLA----- 479
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
+ LLE+ +D L N L S Q + ++ +FLS + + ++D+ G
Sbjct: 480 EALLEKTGYLDS-----LRLQNTLES--QARIENIEEFLSVTKNFDESSASQEEDETGVD 532
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ + D +T+ + + + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 533 RLGRFLNDLALIADTDDSQAEAAE----VTLMTLHAAKGLEFPVVFLIGMEEGVFPLSR- 587
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
+E +EEERRL YV +TRA + LF M +AN + L +P+RFLKEI
Sbjct: 588 ----ASEDPDELEEERRLAYVGITRAEEVLF----MTNANTRTLFGKSSYNRPTRFLKEI 639
Query: 936 PHHL 939
L
Sbjct: 640 SEEL 643
>gi|358464879|ref|ZP_09174837.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. oral taxon 058
str. F0407]
gi|357066408|gb|EHI76558.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. oral taxon 058
str. F0407]
Length = 763
Score = 225 bits (574), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 211/729 (28%), Positives = 335/729 (45%), Gaps = 115/729 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R + ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYGL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I + Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVSKCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N G +I+ ++E
Sbjct: 266 EKDYPQAKVVLLEENYRSTKTILQAANDVIKNNKNR-RPKNLWTQNEDGHEIVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+ I E G + + A+LYR + + A + IP+ + G F
Sbjct: 325 QDEAVFVAKTIDEL---GRSQNFLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRK 702
Y +K +R IIA L D+ + R+ E KR ++ I + ++
Sbjct: 382 YSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANLQD 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ +I + I G +S +L E + +L +I+ ++ SV
Sbjct: 434 MSMLDASANIMLSGIKGKAAQSIWDFANMILDLREQLDQL-----TITELVESV------ 482
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
LE+ VD +LN L S + + ++ +FLS T ++ Q+++ +
Sbjct: 483 ---LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSV--TKNFDDNPDGQEEETGL 530
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 531 DKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFIIGMEENVFPLSR- 586
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+ EI
Sbjct: 587 ----AAEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFINEI 638
Query: 936 PHHLREVQA 944
L E Q
Sbjct: 639 SSDLLEYQG 647
>gi|372266368|ref|ZP_09502416.1| DNA-dependent helicase II [Alteromonas sp. S89]
Length = 738
Score = 225 bits (574), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 207/731 (28%), Positives = 329/731 (45%), Gaps = 99/731 (13%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTF 286
S+ L LND Q EA L ++AG GSGK G SP +I+A+TF
Sbjct: 4 SELLDPLNDPQREAVAAPPGNQL-VLAGAGSGKTRVLVHRIAWLMQVEGASPYSIMAVTF 62
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR 346
T AA EMR RI ++G T + + TFH + +L R+H ++ + F I Q R
Sbjct: 63 TNKAAREMRGRIEELLGVNTFG-MWVGTFHGLAHRLLRAHWQEAKLPQNFQILDSDDQLR 121
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
I + ++NE L K+ S R + + + A
Sbjct: 122 LI----KRVQNELGLDEKKWSP------------RETQWWIGAQ---------------- 149
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSC---NALDYHDLISCSVKLLS 463
K G P + GD ++ Y+ +C +D+ +L+ + +LL
Sbjct: 150 --------KDEGIRPQYIQLTGDPWLQTMVRIYSAYEEACQRAGVVDFGELLLRAHELLL 201
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-RITIVGDDDQSIFSFNGADI 522
+ Y+ + I+VDEFQDT+ +QY+ L++LA IT VGDDDQSI+ + GA I
Sbjct: 202 NNDSILAHYRRRFPFILVDEFQDTNTIQYAWLRLLAGDQCAITAVGDDDQSIYGWRGAKI 261
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
F D + +RL +NYRST I+ AA+++I HN R K + T+ G I +
Sbjct: 262 ENIQHFEADLKEVQTVRLEQNYRSTSTILNAANAVIAHNSGRLG-KQLWTEGDKGEPISL 320
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI 642
+NE + FI+++I + +G SIAILYR +V + ++P+ I
Sbjct: 321 YSAYNEQDEARFIVERIQDWVRDG----NRRDSIAILYRSNAQSRVLEEGLLREQVPYRI 376
Query: 643 HGVA-FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
+G FY + ++ ++ +R DD + RV + R +D + +
Sbjct: 377 YGGQRFYERMEIKNALSYMRLMTNRHDDTSFERVVNT---PTRGIGARTVDTVRGFAREH 433
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
CS SAA + K+ G + L +I L E S + +A +
Sbjct: 434 GCSLWSAAEKMLQQKVLAA------RAGNALANFLSLIDAL--DEESTDKTLDHIAELA- 484
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
+EQ +++F G + + LQ L++ F A E VD+++
Sbjct: 485 ----IEQTGLIEFHGKEKGEKGQTRVENLQELVSACRGFDGIPTADADGEA-VDEEE--- 536
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
I +L F+D + E Q + E++V L T+H +KGLE+ +VF+A E P H
Sbjct: 537 IPLLNQFLDSAALDAGE---GQADEFEDAVQLMTLHSAKGLEFPLVFMAGVEENLFP--H 591
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP-H 937
+ + E G +EEERRL YV +TRA +KL+I Y + + +PSRF+ EIP
Sbjct: 592 KM--SAQEPG-RMEEERRLCYVGITRAMQKLYITYAESRRLFGSETYNKPSRFVSEIPVE 648
Query: 938 HLREVQAEQSV 948
++ EV+ + V
Sbjct: 649 YIHEVRLKTEV 659
>gi|71903614|ref|YP_280417.1| DNA helicase II [Streptococcus pyogenes MGAS6180]
gi|139473666|ref|YP_001128382.1| DNA helicase II [Streptococcus pyogenes str. Manfredo]
gi|383480121|ref|YP_005389015.1| ATP-dependent DNA helicase, PcrA [Streptococcus pyogenes MGAS15252]
gi|383494037|ref|YP_005411713.1| ATP-dependent DNA helicase, PcrA [Streptococcus pyogenes MGAS1882]
gi|71802709|gb|AAX72062.1| DNA helicase II [Streptococcus pyogenes MGAS6180]
gi|134271913|emb|CAM30151.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes str.
Manfredo]
gi|378928111|gb|AFC66317.1| ATP-dependent DNA helicase, PcrA [Streptococcus pyogenes MGAS15252]
gi|378929765|gb|AFC68182.1| ATP-dependent DNA helicase, PcrA [Streptococcus pyogenes MGAS1882]
Length = 772
Score = 225 bits (574), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 204/724 (28%), Positives = 331/724 (45%), Gaps = 114/724 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q +A PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAQA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ K+ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKERALSL--NPATKDTLIATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+L+ I K +L T S + L +E
Sbjct: 121 --KRILKQLNIDPKKWNERSILGT-------------------ISNAKNDLLDEKGYEAQ 159
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D+ +I A + Y LR ALD+ DLI +++L P+V
Sbjct: 160 AADMYS--------------QIVARCYKAYQEELRRSEALDFDDLIMMTLRLFDANPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 AYYQQRYQYIHVDEYQDTNHAQYQLIKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + K + L NYRST+ I++AA+ +I +N R + K + T N+ G +++ ++E
Sbjct: 266 EKDYPDAKVVLLEENYRSTKKILQAANDVINNNRNR-RPKKLWTQNADGEQLVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASIC-SYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
+ F+ I SN + ++ A+LYR + + A + IP+ + G
Sbjct: 325 RDEAVFVASTI----SNMSQELGKNFKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTK 380
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIRK 702
FY +K +R +IA L D+ + R+ E K+ V +D + + +
Sbjct: 381 FYSRKEIRDLIAYLTIVANPADNISFERIV-------NEPKRGVGPGTLDKLRQFAYESD 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + AA ++ + + G + + ++ L I +R++ IT +A
Sbjct: 434 QSLLEAASNLLMSPLKG--------KAAQAIMDLANILGQLRQDLD-QMSITDLA----- 479
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
+ LLE+ +D L N L S Q + ++ +FLS + + ++D+ G
Sbjct: 480 EALLEKTGYLDS-----LRLQNTLES--QARIENIEEFLSVTKNFDESSASQEEDETGVD 532
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ + D +T+ + + + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 533 RLGRFLNDLALIADTDDSQAEAAE----VTLMTLHAAKGLEFPVVFLIGMEEGVFPLSR- 587
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
+E +EEERRL YV +TRA + LF M +AN + L +P+RFLKEI
Sbjct: 588 ----ASEDPDELEEERRLAYVGITRAEEVLF----MTNANTRTLFGKSSYNRPTRFLKEI 639
Query: 936 PHHL 939
L
Sbjct: 640 SEEL 643
>gi|283457344|ref|YP_003361920.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18]
gi|283133335|dbj|BAI64100.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18]
Length = 985
Score = 225 bits (574), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 234/866 (27%), Positives = 378/866 (43%), Gaps = 153/866 (17%)
Query: 129 PIKQPEFFNMSESFSMPSPLDDDFDDSILQEIDAICEKSAAKDVRKAQNSGIYEETHQND 188
P +P F + +P P +DD+ +DA ++ A+DV A +G+
Sbjct: 30 PDDEPPF---DPYYDVP-PAEDDY---YAPAMDAPMVEAPAQDVPVALPTGMPAYGAPAT 82
Query: 189 NSCTHLNASLESVTTNENIR--MDISMDLAG------DMKSSMEKTDTIQTIKTQNMPDE 240
++ + + + TT + + M + + G E+T ++ + ++
Sbjct: 83 SAPVPVPGAPAAFTTADPLGDFMPPAYRVGGYGEDFDPADPYGERTHSLNAVDPASL--- 139
Query: 241 YSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMT 285
LN++Q EA S PLLIVAG GSGK +P ILA+T
Sbjct: 140 ----TAGLNERQEEAVLHSGS-PLLIVAGAGSGKTRVLTHRIAYLLATHRATPGQILAIT 194
Query: 286 FTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQR 345
FT AA+EMR+RI ++VG AK + ISTFHSF +++ R A L S F IY
Sbjct: 195 FTNKAAAEMRERIEALVGP-RAKHMWISTFHSFCVRVLRREAAALGLKSTFTIYDS---- 249
Query: 346 RAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNK 405
++ RLL L++K ++ D R S + N ++ + ++ N
Sbjct: 250 ---TDSQRLLS----LIIKELNLDTKKFTAKAVGNRISA-LKNELVSAEAYASRVASDNP 301
Query: 406 FERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+E KT A+ + Y LR+ N+LD+ DLI +V LL F
Sbjct: 302 YE-----------KTIAQIYTV-----------YTQRLRAANSLDFDDLIGRTVFLLKKF 339
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLL-QILASHNR----------------ITIVG 508
PE+ Y+ ++ I+VDE+QDT+ QY L+ +++ +H + +T+VG
Sbjct: 340 PEIANYYRRKFRHILVDEYQDTNHAQYQLVRELVGAHVKAPADRGPYPDAVPPAELTVVG 399
Query: 509 DDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLK 568
D DQSI++F GADI F KD+ N I L +NYRST+ I+ AA+++I+ N R + K
Sbjct: 400 DSDQSIYAFRGADIRNITDFEKDYPNAHTILLEQNYRSTQNILSAANAVIERNPDR-RPK 458
Query: 569 NVQTDNSHGSKIIIKECHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVS 625
+ T + G+KII +E A+ FI ID++ + P G +AI YR
Sbjct: 459 KLWTASGAGAKIIGYVAESEHAEARFITREIDRLADEHGVQP------GDVAIFYRTNAQ 512
Query: 626 GKVFQTAFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEK 684
+ + +P+ + G FY +K ++ +A LR DD RR+
Sbjct: 513 SRTLEDMLMRAGLPYRVVGGTRFYERKEIKDALAYLRALSNPDDDVNVRRILN------- 565
Query: 685 EEKKRVIDH-----IDKISTIRKCSFISA---ACDIFGAKISGTFKRSQLTQGRKVLLTL 736
E KR I + +T + SF +A A D+ G + K ++ + +
Sbjct: 566 -EPKRGIGAKSESVVADYATAHRISFFAAARQAADVPGLGAAAVKKYAEFVR------LM 618
Query: 737 EMISKLVRREPS---ISAVITSVANMVPQKYLLEQRAVVDF-DGGKLLNEDNDLRSVLQY 792
+ ++++ R EP+ + AV+ YL RA D D ++ N L +++++
Sbjct: 619 DDLAQIARTEPAATCLEAVLEQTG------YLAALRASKDIQDESRVENLSELLDAMVEF 672
Query: 793 LL----ADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNE 848
AD+ FL E + D N + + +
Sbjct: 673 ETENPGADLEQFL--------EHVALVADADSIPNRPASAEGESASAAQIAAEAAEAKAQ 724
Query: 849 NSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRA 908
VTL T+H +KGLE+ +VF+ P H+ +EK S EERRL YV +TRA
Sbjct: 725 GMVTLMTLHTAKGLEFPVVFLTGMEHGLFP--HQ-RALTDEKEMS--EERRLAYVGLTRA 779
Query: 909 RKKLFILYVMMDANW---QLLQPSRF 931
++L++ W Q PS F
Sbjct: 780 MERLYLTRSETRTMWGKSQFNPPSPF 805
>gi|169825828|ref|YP_001695986.1| ATP-dependent DNA helicase pcrA [Lysinibacillus sphaericus C3-41]
gi|168990316|gb|ACA37856.1| ATP-dependent DNA helicase pcrA [Lysinibacillus sphaericus C3-41]
Length = 749
Score = 225 bits (574), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 216/768 (28%), Positives = 340/768 (44%), Gaps = 148/768 (19%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +N +Q E A PLLI+AG GSGK + PS +LA+TFT
Sbjct: 9 LAGMNPEQ-ERAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLIIEKEVYPSKVLAITFTNK 67
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+RI I+G T + +STFHS +++ R + ++L + F I Q ++I
Sbjct: 68 AAREMRERIDGILGNGTGDSMWVSTFHSMCVRILRRNIDQLGISRNFSILDSTDQL-SVI 126
Query: 350 EAVRLLEN------EKILVVKRIST---DMLTTDGHFGYMRASLFMMNAMLFFSMSSFKL 400
+ V EN E ++ IS + +T D + G+M
Sbjct: 127 KNVMKDENIDPKRFEPRAILNAISAAKNECITADDYAGHM-------------------- 166
Query: 401 CQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVK 460
+ K P E + A + + Y LR +LD+ DLI ++
Sbjct: 167 ----------------NDKNPYE------QTVARVYKGYEKRLRRNQSLDFDDLIMTTIT 204
Query: 461 LLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNG 519
L PEV + YQ+ ++ I VDE+QDT+ QY L+Q+LA I +VGD DQSI+ + G
Sbjct: 205 LFKRVPEVLEYYQNKFQYIHVDEYQDTNKSQYLLVQLLAKKFKNICVVGDSDQSIYRWRG 264
Query: 520 ADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSK 579
ADI SF KD+ N K I L +NYRST+ I++AA+ +IQ+N R K ++T+N+ G K
Sbjct: 265 ADIGNILSFEKDYPNAKVIMLEQNYRSTKRILQAANDVIQNNTTRYP-KELRTENAEGEK 323
Query: 580 IIIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERK 637
I + + +NE + F++ I L N ++ AILYR +V + +
Sbjct: 324 IALYKAYNEQEEAQFVVQTIQQLMEKEN-----RTFDDFAILYRTNAQSRVMEEVLVKSN 378
Query: 638 IPFNI-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDK 696
+ + I G FY +K ++ ++A LR DD R+ E KR I
Sbjct: 379 MVYQIVGGTKFYDRKEIKDLLAYLRLIANNDDDLSLARIIN--------EPKRSI----- 425
Query: 697 ISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKV------LLTLEMISKLVRREPSIS 750
GA R + Q R + L+ + + K
Sbjct: 426 -----------------GATSFEKMARYAIEQDRSIFDAMNDLIFMGLSGKAANSAEQFY 468
Query: 751 AVITSVANMVPQKYL-----LEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKF 805
A+I M Q+YL +EQ V+D G + + + N+ + L ++ +FLS
Sbjct: 469 AMIKGFTEM--QEYLSVTEIVEQ--VIDKSGYRTMLQ-NEKTIEAESRLENIEEFLSV-- 521
Query: 806 TAAKEEGNVDQDKKGCIN--VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLE 863
T A EE + D+ + L A ID + + + ++ ++ L T+H +KGLE
Sbjct: 522 TKAFEERSDDKSLIAFLTDLALIADIDALDKEDA---------SKGNIILMTMHAAKGLE 572
Query: 864 WDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM---MD 920
+ IVF+ E P + +EEERRL+YV +TRA ++L++ +
Sbjct: 573 FPIVFIIGMEENIFPHSRSLDDQ-----DEMEEERRLMYVGVTRAEERLYLTCAQSRTIF 627
Query: 921 ANWQLLQPSRFLKEIPHHLREVQAEQSVQDQHENIPEGTAQFTINLPR 968
SRFL EI + E ++ + N+P T+ + N +
Sbjct: 628 GRSSFNNASRFLGEISEDITESISKAGAK---TNVPFATSNRSSNYQK 672
>gi|284047984|ref|YP_003398323.1| ATP-dependent DNA helicase PcrA [Acidaminococcus fermentans DSM
20731]
gi|283952205|gb|ADB47008.1| ATP-dependent DNA helicase PcrA [Acidaminococcus fermentans DSM
20731]
Length = 750
Score = 225 bits (574), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 222/730 (30%), Positives = 358/730 (49%), Gaps = 127/730 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
L SLN+QQ EA ++ P+LI+AG GSGK G+ P NILA+TFT A
Sbjct: 5 LASLNEQQAEA-VRQIAGPILILAGAGSGKTKALTTKIAYLLEKGVKPWNILAITFTNKA 63
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLE-RTSEFLIYGHGQQRRAII 349
A EMR R+ ++VG +AK++ + TFH F QL R L T+ F IY + +
Sbjct: 64 AKEMRQRVDALVG-PSAKDVWLYTFHGFCNQLLRRDINALPGYTTSFSIYDPSDCKNVLK 122
Query: 350 EAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNK--F 406
EA++ L +EK F L ++S+ K Q + F
Sbjct: 123 EALKKLNLDEK-------------------------FYPLPGLLATISNAKNAQVDAAAF 157
Query: 407 ERDGMDV-AKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
R D AK + AE++K L NA+D+ DL+ +VKLL T
Sbjct: 158 ARQAEDYHAKKVAEIYAEYQKH---------------LVQSNAVDFDDLLLLTVKLLQTV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISG 524
PEV ++YQ+ + +++DE+QDT+ +QY L ++L A N + VGD DQSI+ + GADIS
Sbjct: 203 PEVREKYQNKFHYVLIDEYQDTNHVQYLLAKLLSAPENNLCAVGDIDQSIYGWRGADISN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
F KD+ + +L +NYRST+ I++AA+ +I+HN R + KN+ T+N +G I +
Sbjct: 263 ILDFEKDYPQARIFKLEQNYRSTQVILDAANEVIKHNAAR-RPKNLWTENGNGQPIAYYQ 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG 644
++ + F++ +I + G G +AILYR ++F+ +P+ + G
Sbjct: 322 ARDDREEAEFVVGQIRKLQREG----TKLGDMAILYRTNAQSRMFEENLINNGVPYVMVG 377
Query: 645 -VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
+ FY +K V+ ++ LR FL E++ I +++I K
Sbjct: 378 SLKFYDRKEVKDTLSYLR-----------------FLSNERD-----IQGLERIINEPKR 415
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV------ITSVA 757
+A AK+ + S +T +VL T++ L R P I A + V
Sbjct: 416 GIGAATV----AKVRTLLEDSGMTL-PEVLQTVQARELLGRAFPKIQAFSDMIQELARVK 470
Query: 758 NMVPQKYLLEQRAVVDFDG--GKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVD 815
+ +P K L+EQ V++ G L E +D + L ++ +FL AK+ G +
Sbjct: 471 DTLPVKDLMEQ--VLEKSGYLEALRLEGSDQS---KSRLDNLNEFLRIADEFAKDPG--E 523
Query: 816 QDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
++ K L+ F+++++ + + + ++SVTL T+H +KGLE+ +VF+ +
Sbjct: 524 ENNK----TLEDFLNHVALVADIDDAKL----TQDSVTLMTLHSAKGLEFPVVFIGGMED 575
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRF 931
P + E +EEERRL YV +TRA+K+L++ M+ + + PSRF
Sbjct: 576 GLFP-----SQRSLEDEDKLEEERRLCYVGITRAKKRLYLTNCRSRMVYGHVVMYPPSRF 630
Query: 932 LKEIPHHLRE 941
L+EIP +L E
Sbjct: 631 LEEIPRNLIE 640
>gi|227893040|ref|ZP_04010845.1| ATP-dependent DNA helicase PcrA [Lactobacillus ultunensis DSM
16047]
gi|227865153|gb|EEJ72574.1| ATP-dependent DNA helicase PcrA [Lactobacillus ultunensis DSM
16047]
Length = 748
Score = 225 bits (574), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 206/739 (27%), Positives = 327/739 (44%), Gaps = 129/739 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L SLN QQ + A PLL+VAG GSGK ++P NILA+TFT
Sbjct: 7 LASLNPQQ-KKAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EMRDR ++G A A+ + +STFH+ +++ R A+K+ + F I +Q
Sbjct: 66 AATEMRDREQGLLGPA-AENIWMSTFHALCVRILRRDADKIGYSHNFSIADSAEQ----- 119
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +VK I D+ +N ++ K +
Sbjct: 120 ----------LTLVKHIEKDL---------------NINPKMYDPRGVLAAISNGKNDLL 154
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ AS +P E ++ A I + Y LR +D+ DLI ++ L PE
Sbjct: 155 DPEAYTASASSPFE------KMTAKIYQEYQRRLRRDQIMDFDDLIMQALVLFKKDPETL 208
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSF 528
YQ+ ++ I+VDE+QDT+ QY L LA+ + I +VGD DQSI+ + GA++ +F
Sbjct: 209 HYYQNKFRYILVDEYQDTNEAQYQLCHALAAQYKNICVVGDADQSIYGWRGANMENIMNF 268
Query: 529 RKDFL--NYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
D+ K ++L +NYRST I+ AA+S+I++N R + KN+ TD G K+ +
Sbjct: 269 EHDYKKDGVKTVKLEQNYRSTGHILSAANSVIKNNQNR-KSKNLWTDCGEGQKVTYYQAQ 327
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGV 645
+ D + +II KI E + SY AILYR + + AF + IP+ I G
Sbjct: 328 SGDNEAHYIISKIQEEVKDKKR---SYKDFAILYRTNAQSRTVEEAFVKSNIPYQIVGGH 384
Query: 646 AFYRKKVVRAIIAMLRTTLPGCD--------DGPYRRVFKA----FLLLEKEEKKRVIDH 693
FY +K ++ I+A L+ D + P R + A + E +D
Sbjct: 385 KFYDRKEIKDIMAYLKLVANPADTMSMNRIINTPKRGIGAATVDKLMTFADENHYNTLDA 444
Query: 694 IDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI 753
++ ++ + + FGAK+ R+ + A
Sbjct: 445 MEHVAESPINTRAAKKLSDFGAKL---------------------------RDAIVFAQN 477
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST--KFTAAKEE 811
V L ++ + DFD L +N + S + L ++ +FLS +F E
Sbjct: 478 HGVTG-------LTEKILEDFDYTDALKAENTIES--ETRLENLDEFLSVTKRFDDHYEP 528
Query: 812 GNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAK 871
D + D+++E + +++N V L T+H +KGLE+ +VF+
Sbjct: 529 EEDDSN---------PLSDFLAEVSLLSDQDDLDEDDNQVALMTLHAAKGLEFPVVFLIG 579
Query: 872 ANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQP 928
+ PL +EEERRL YV +TRA+++LF+ MM Q P
Sbjct: 580 MEDGLFPLQRSM-----MDDNELEEERRLAYVGITRAKQELFLTNAYSRMMYGRTQSNPP 634
Query: 929 SRFLKEI-PHHLREVQAEQ 946
SRFL EI P L + + E+
Sbjct: 635 SRFLDEIDPKDLHKEENEK 653
>gi|406669135|ref|ZP_11076415.1| ATP-dependent DNA helicase PcrA [Facklamia ignava CCUG 37419]
gi|405583932|gb|EKB57858.1| ATP-dependent DNA helicase PcrA [Facklamia ignava CCUG 37419]
Length = 767
Score = 225 bits (574), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 205/726 (28%), Positives = 337/726 (46%), Gaps = 110/726 (15%)
Query: 248 LNDQQLEAACGDMST--PLLIVAGPGSGK---------------GISPSNILAMTFTTAA 290
LND Q +A M+T PLLI AG GSGK ++P NILA+TFT A
Sbjct: 11 LNDLQRQAV---MTTEGPLLIAAGAGSGKTRVLTHRIAYLIAYQDVNPWNILAITFTNKA 67
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIE 350
ASEM R+ +VG+ A+ + ++TFH+ ++ R + F I G+Q+
Sbjct: 68 ASEMGTRVEQLVGEG-AESIWVATFHAMCARILRREYHHIGYDRNFTIIDAGEQQ----- 121
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
V+K++ D L D + + L ++
Sbjct: 122 ----------TVMKQVLKD-LNLDSKRYHPKEMLSLI----------------------- 147
Query: 411 MDVAKASGKTPAEFRK--IG--DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
D AK G+TP ++ + +G +I + + Y L+ NA+D++DLI + +L + P
Sbjct: 148 -DQAKNKGQTPEQYAEEAVGYLADIYSQVYRGYQKRLKQSNAMDFNDLIMLTNQLFAEQP 206
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH--NRITIVGDDDQSIFSFNGADISG 524
EV YQ ++ I VDE+QDT+ QY L++ LA I +VGD DQSI+ + GA++
Sbjct: 207 EVLAFYQRKFQYIHVDEYQDTNESQYQLIRYLAGGILQNICVVGDADQSIYGWRGANMEN 266
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+F +DF + + I L +NYRST+ I++AA+S+IQ+N R Q K + ++ KI +
Sbjct: 267 ILNFERDFKDAQVILLEQNYRSTQPILKAANSVIQNNPHR-QPKQLWSERESDEKIRYYQ 325
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
+ + ++I +I+E + Y AILYR Q + + A +P+ +
Sbjct: 326 AETDVEESRYVIQQIMEAKEDQG---LEYRDFAILYRTQAQSRALEEALMRVNLPYKVVG 382
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
G FY +K ++ +A LR D+ + R+ KR I +T+ +
Sbjct: 383 GTKFYARKEIQDTLAYLRLIDNPADNLSFLRIVNV--------PKRGIG----ATTVERL 430
Query: 704 SFISAACDIFGAKISGTFKRSQLTQG--RKVLLTLEMISKLVRREP--SISAVITSVANM 759
+ +A+ D+ + S L++ K++ M+ + R+ ++S +I +V
Sbjct: 431 TEFAASIDMSLFESISRLSYSNLSKATQEKLVDFANMVEQWHRQAEFLTLSELIEAVWQA 490
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLS--TKFTAAKE---EGNV 814
+ L+ ++ + +L N + L +Y + DFL + A E E N
Sbjct: 491 AGYQESLKLEGTIEAE-ARLDNLNEFLSVAHEYDELENADFLERDPDYLAQSEREGEANA 549
Query: 815 DQDKKGCINVLKAFIDYISERETEHFRTQRHDN--ENSVTLTTIHQSKGLEWDIVFVAKA 872
+ L+ F+ +S T +N EN VTL T+H +KGLE+ VF+
Sbjct: 550 TSTEATPKQRLRFFLTDLS------LMTDAAENETENQVTLMTLHAAKGLEFPYVFMVGM 603
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPS 929
E P+ E + VEEERRL YV MTRA +LF+ ++ N+Q +PS
Sbjct: 604 EEGLFPIRRAL-----EDPSEVEEERRLAYVGMTRAEDRLFLTSTRRRLLYGNYQYNEPS 658
Query: 930 RFLKEI 935
RF+ EI
Sbjct: 659 RFIDEI 664
>gi|402830229|ref|ZP_10878933.1| UvrD/REP helicase N-terminal domain protein [Capnocytophaga sp.
CM59]
gi|402286050|gb|EJU34529.1| UvrD/REP helicase N-terminal domain protein [Capnocytophaga sp.
CM59]
Length = 773
Score = 225 bits (574), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 150/449 (33%), Positives = 233/449 (51%), Gaps = 53/449 (11%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
YL LN+ Q A P++++AG GSGK G+ P NILA+TFT
Sbjct: 3 YLDELNEAQ-RAPVVHKDGPVMVIAGAGSGKTRVLTYRIAYLMQQGVDPFNILALTFTNK 61
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++RIG IVG + A+ L + TFHS ++ R A KL +F IY R I
Sbjct: 62 AAREMKERIGRIVGPSEARNLWMGTFHSVFARILREEASKLGFPRDFTIYDQQDSHRLIS 121
Query: 350 EAVRLLENEK-ILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
++ + +K + K+I++ R S + N ++ ++ +E
Sbjct: 122 AIIKEMGLDKDVYKYKQIAS------------RISSYKNN---LITVKAY-------YEN 159
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
+ A A K P ++GD I NY A+D+ DL+ + +LL+ FPEV
Sbjct: 160 PELQEADAMAKHP----RLGD-----IYRNYVDRCFKAGAMDFDDLLLRTNELLNVFPEV 210
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDS 527
+YQ ++ I+VDE+QDT+ QY +++ LA I +VGDD QSI++F GA+I +
Sbjct: 211 LAKYQHRFRYILVDEYQDTNHSQYLIVRALADRFQNICVVGDDAQSIYAFRGANIDNIFN 270
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F+KD+ N RL +NYRSTR IVEAA+++I+HN R + K V T N G+ I +
Sbjct: 271 FQKDYRNVGVYRLEQNYRSTRNIVEAANNVIEHNKARLE-KVVWTANESGTLIKVHRSPT 329
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVA 646
+ + F+ I E A SYG A+LYR + + + A R+R IP+ I+ G++
Sbjct: 330 DADEGRFVAGTIFEEAMQHQ---LSYGDFAVLYRTNMQSRAIEDALRKRDIPYRIYGGLS 386
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRV 675
FY++K ++ ++A R + D+ R+
Sbjct: 387 FYQRKEIKDLLAYFRLAINENDEEALHRI 415
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 8/93 (8%)
Query: 846 DNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAM 905
+++N V+L TIH +KGLE+ VF+ E P + T +EEERRL YVA+
Sbjct: 559 EDDNRVSLMTIHLAKGLEFPYVFIVGMEEDLFP-----SALSQNTRTEMEEERRLFYVAL 613
Query: 906 TRARKKLFILYVMMDANWQLL---QPSRFLKEI 935
TRA K+ ++ Y W L +PSRF++EI
Sbjct: 614 TRAEKQAYLTYTESRYRWGKLMDAEPSRFIEEI 646
>gi|410459786|ref|ZP_11313493.1| PcrA [Bacillus azotoformans LMG 9581]
gi|409929147|gb|EKN66235.1| PcrA [Bacillus azotoformans LMG 9581]
Length = 742
Score = 225 bits (574), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 216/748 (28%), Positives = 343/748 (45%), Gaps = 104/748 (13%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFT 287
+ L LN +Q +AA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 6 RLLSGLNPEQ-QAAVRSTEGPLLIMAGAGSGKTRVLTHRIAYLMSEKDVAPWNILAITFT 64
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM+DR+ +IVG TA+E+ ISTFHS +++ R +++ F I Q
Sbjct: 65 NKAAREMKDRVANIVG-PTAEEIWISTFHSMCVRILRRDIDRIGMNRNFSILDTSDQLSV 123
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFK--LCQYNK 405
I +KIL K I G S+SS K L +
Sbjct: 124 I---------KKILKEKNIDPKKFDPKTILG---------------SISSAKNELITTEE 159
Query: 406 FERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+E+ D + + I D + + Y L+ +LD+ DLI +++L
Sbjct: 160 YEKSASDYYRNT---------ISD-----VYKAYQDRLKKNQSLDFDDLIMMTIQLFDRV 205
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV + YQ ++ I VDE+QDT+ QY L++ +A+ + +VGD DQSI+ + GADI+
Sbjct: 206 PEVLEFYQRKFQYIHVDEYQDTNRAQYMLVKSMAARFKNLCVVGDSDQSIYRWRGADIAN 265
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF KD+ N I L +NYRST+ I++AA+ +I+ N R + K + T+N G K++
Sbjct: 266 ILSFEKDYPNANVIMLEQNYRSTKRILDAANKVIEKNSNR-KPKKLWTENDEGKKLVYYR 324
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-H 643
E + F+ KI E +G SY IAILYR +V + + I +NI
Sbjct: 325 GDTERDEGHFVAGKIKEIVESGK---HSYQDIAILYRTNAQSRVMEEVLLKSNIQYNIVG 381
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
G+ FY +K ++ ++A LR DD R+ + ++ +D I + +
Sbjct: 382 GMKFYDRKEIKDLLAYLRLIANPDDDISLARIIN---VPKRGIGASTLDKIGEYALQAGM 438
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
S A ++ +S F + L + R + + + + S++ ++ V +
Sbjct: 439 SVNEALNEVDFMGLSARFTNT-LIEFRDQIRNWNQMQEFL----SVTELVEEVLEKTGYR 493
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
+L+ ++ +G L ++ +FLS T E+ N D+ +
Sbjct: 494 DMLKAEKTIEAEG----------------RLENIDEFLSV--TKNFEKTNEDKSLVSFLT 535
Query: 824 VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
L A I I + + E +++SV L T+H +KGLE+ +VF+ E P
Sbjct: 536 DL-ALISDIDQADKEE-----EGSQDSVMLMTLHSAKGLEFPVVFLMGLEEGVFP----- 584
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD---ANWQLLQPSRFLKEIPHHLR 940
+ +EEERRL YV +TRA +LF+ M Q+ SRF+ EIP L
Sbjct: 585 HSRSLMDDEEMEEERRLAYVGITRAENELFLTNARMRTLFGRTQMNPVSRFIGEIPDELI 644
Query: 941 EVQAEQSVQDQHENIPEGTAQFTINLPR 968
E AE+ + Q + P F ++ PR
Sbjct: 645 ENLAEEFAK-QTQRQPTAATPFGVSKPR 671
>gi|289577825|ref|YP_003476452.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter italicus Ab9]
gi|289527538|gb|ADD01890.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter italicus Ab9]
Length = 711
Score = 225 bits (574), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 228/725 (31%), Positives = 356/725 (49%), Gaps = 126/725 (17%)
Query: 245 LQSLNDQQLEAACGDMST--PLLIVAGPGSGKG---------------ISPSNILAMTFT 287
L +LND+Q EA M+T PLLI+AG GSGK ISPSNILA+TFT
Sbjct: 5 LDNLNDKQKEAV---MTTEGPLLILAGAGSGKTRVLTHRIAYLIKEKKISPSNILAITFT 61
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM+ R+ ++G +L +STFHS S+++ R +K+ F+I+ Q+
Sbjct: 62 NKAAEEMKTRVEELLG--YIGDLWVSTFHSASVRILRRDIDKIGYDRNFVIFDTTDQKAL 119
Query: 348 IIEAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
I E ++ L +EK VK + +NA+ SS
Sbjct: 120 IQECLKELNLSEKQYPVKTV--------------------LNAI-----SS--------- 145
Query: 407 ERDGMDVAKASGKTPAEFRKI-GDEIGAA----ILENYNGILRSCNALDYHDLISCSVKL 461
AK TP E+ + G+E + I + Y L+ NALD+ D+I +++L
Sbjct: 146 -------AKDKMVTPEEYIHVFGNEYRSKKISEIYKLYQKKLKKNNALDFDDIIIKTIEL 198
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGA 520
PEV YQ +K I+VDE+QDT+ QY + +LA R + +VGDDDQSI+ + GA
Sbjct: 199 FKESPEVLDFYQRKFKYIMVDEYQDTNMPQYHFVNMLAQKYRNLCVVGDDDQSIYGWRGA 258
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
D+ +F KD+ K I+L +NYRST+ I+EAA+ +I +N++R + K + T+N G KI
Sbjct: 259 DVGNILNFEKDYPEAKVIKLEQNYRSTKTILEAANYVIDNNIRRKK-KTLWTNNEQGEKI 317
Query: 581 IIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKI 638
I+ E NE + F+I +I L+ N S+ AILYR + F+ A +I
Sbjct: 318 ILCELENEREEAEFVIQEIINLKERENR-----SFRDFAILYRTNAQSRAFEEALMRVRI 372
Query: 639 PFNIHG-VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKI 697
P+ + G + FY +K ++ IIA LR + DD ++R+ + ++ I+ ++
Sbjct: 373 PYKVVGALRFYDRKEIKDIIAYLRILVNPYDDISFKRIIN---VPKRGIGAATIEALEAT 429
Query: 698 STIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVA 757
++ + S A I AK+S K S L LE+I K + ++S VI
Sbjct: 430 ASEKDTSLFFA---IDNAKVSQRAKNSLLEFKE---FILELIDK--KDTMTVSEVI---- 477
Query: 758 NMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQD 817
KY+LE+ ++ +L E+++ + + ++ +FL+ AA E +D
Sbjct: 478 -----KYILEETGYIE----ELKREESEQ---AEGRIENLNEFLN----AAYEFEESSED 521
Query: 818 KKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
K L+AF+ I+ + + SV L T+H +KGLE+ +VF+ E
Sbjct: 522 KS-----LEAFLSGITLVSDIDLAGEIGE---SVVLMTLHSAKGLEFPVVFMVGMEEGVF 573
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM---MDANWQLLQPSRFLKE 934
P F +EEERRL YV +TR+++KL++ Y + Q SRF+ E
Sbjct: 574 PSFKSFTDE-----HELEEERRLCYVGITRSKEKLYLTYARRRNLYGKSQYGTYSRFISE 628
Query: 935 IPHHL 939
IP
Sbjct: 629 IPERF 633
>gi|415703354|ref|ZP_11459232.1| Superfamily I DNA and RNA helicase [Gardnerella vaginalis 284V]
gi|388052814|gb|EIK75829.1| Superfamily I DNA and RNA helicase [Gardnerella vaginalis 284V]
Length = 956
Score = 225 bits (574), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 230/828 (27%), Positives = 374/828 (45%), Gaps = 143/828 (17%)
Query: 185 HQNDNSCTHLNASLESVTTNENIRMDISMD-LAGDMKSSMEKTDTIQTIKT--------- 234
Q+D S + NA + N+++ ++S +AGD S + ++++Q+ +T
Sbjct: 19 EQSDASIS--NAPISDAPINKDMTSEVSASTVAGDF--SAKYSNSVQSSQTAQSSAAAQY 74
Query: 235 -------QNMPD-EYSKYLQSLNDQQLEAACGDMSTP-LLIVAGPGSGKG---------- 275
N+P+ L+ LN QQ +A + P LLI AG GSGK
Sbjct: 75 AQTSAQSSNIPEINPQSLLEGLNPQQSKAV--QYTGPALLIGAGAGSGKTRVLTRRIAWI 132
Query: 276 -----ISPSNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKL 330
PS ILA+TFT AA+EMR+R+ S++G +A + +STFHS +++ R+H + +
Sbjct: 133 LANRKAWPSQILAITFTNKAAAEMRERLASLIGN-SANSMWVSTFHSACVKILRAHGDSI 191
Query: 331 ERTSEFLIYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAM 390
S F IY R V+++ +E + +K+ + +L + + S F N +
Sbjct: 192 GLKSGFSIYDSSDCERL----VKIIASELNIDIKKFTPKLLLS-------KISDFKNNLV 240
Query: 391 LFFSMSSFKLCQYNKFERDGMDVAKASGKTPAEFRKIG--DEIGAAILENYNGILRSCNA 448
+ L Y + G V+ AS F G D + AA+ Y L NA
Sbjct: 241 TWQE----NLKNYAPDYKPGASVSGAS-----SFNAAGNADALYAAVYAEYQNRLSVSNA 291
Query: 449 LDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-------- 500
+D+ DLI +VKLL P+V Y+ ++ I+VDE+QDT+ QY L++ LA
Sbjct: 292 VDFDDLIMLTVKLLRQNPQVSAYYKRKFRYILVDEYQDTNHAQYVLIRELAGVDDAGVDD 351
Query: 501 ------------------HNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTR 542
+ IT+VGD DQSI++F GADI F +DF + I L +
Sbjct: 352 YSTDSTVSSVSPDSTQLPQSSITVVGDSDQSIYAFRGADIRNIQDFEQDFPSATTIMLEQ 411
Query: 543 NYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEH 602
NYRST+ I++AA+++I +N R + K + T GS I+ N + +++ +I
Sbjct: 412 NYRSTQTILDAANAVISNNTNR-KPKKLWTSLGKGSPIVGYVADNAQGEASWVAQEIARL 470
Query: 603 ASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFYRKKVVRAIIAMLR 661
A +Y IAI+YR + + A + +P+ + G FY ++ V+ +A L+
Sbjct: 471 AGEDG---VNYSDIAIMYRANSQSRSLEDALIKSGLPYQLVGGTKFYERREVKDALAYLQ 527
Query: 662 TTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKIS--- 718
+ DD RR+ + ++ R I + SF SA I KI+
Sbjct: 528 SIANPDDDVNMRRILN---VPKRGLGARAESQITSYAKENSISFWSALSQI--DKIAEQI 582
Query: 719 GTFKRS--QLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDG 776
G R+ L R ++ +L K +PS V N++ + LL+
Sbjct: 583 GISSRTFNALKSFRDLMTSLIDFMKANDSKPS-----KVVENVLNESGLLQD-------- 629
Query: 777 GKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV-DQDKKGCINVLKAFIDYISER 835
L E D + + V + + AA+ E N D + G + D
Sbjct: 630 ---LRESKDPQDEFR-----VDNLSQLQSVAAEYEQNTPDANVAGFLETTALVAD----- 676
Query: 836 ETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVE 895
++ Q D VTL T+H +KGLE+ +VF+ + P + N+K +
Sbjct: 677 -SDQLPDQGEDT-GKVTLMTLHTAKGLEYPVVFLTGMEQGTFPHSRCVD---NQK--ELC 729
Query: 896 EERRLLYVAMTRARKKLFILYVMMDANW----QLLQPSRFLKEIPHHL 939
EERRL YV +TRA+K L++ + + W +++Q S+FL EIP L
Sbjct: 730 EERRLAYVGITRAKKILYVTWAAERSQWGKSAEMIQ-SQFLDEIPADL 776
>gi|417848464|ref|ZP_12494409.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK1073]
gi|339452678|gb|EGP65301.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK1073]
Length = 763
Score = 225 bits (574), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 212/729 (29%), Positives = 338/729 (46%), Gaps = 115/729 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R ++ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYNL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R+ L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERSILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ ++E
Sbjct: 266 EKDYPQAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+ I E G + + A+LYR + + A + IP+ + G F
Sbjct: 325 LDEAVFVAKTIDEL---GRSQNFLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRK 702
Y +K +R IIA L D+ + R+ E KR ++ I + ++
Sbjct: 382 YSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANMQD 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ +I + I G +S +L E + +L SI+ ++ +V
Sbjct: 434 MSMLDASANIMLSGIKGKAAQSIWDFANMILDLREQLDRL-----SITELVEAV------ 482
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
LE+ VD +LN L S + + ++ +FLS T ++ + +++ +
Sbjct: 483 ---LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSV--TKNFDDTSDGPEEETGL 530
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ L F++ ++ +Q + VTL T+H SKGLE+ +VF+ E PL
Sbjct: 531 DKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHASKGLEFPVVFLIGMEENVFPLSR- 586
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+ EI
Sbjct: 587 ----AAEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFINEI 638
Query: 936 PHHLREVQA 944
L E Q
Sbjct: 639 SSDLLEYQG 647
>gi|289435096|ref|YP_003464968.1| DNA helicase, ATP-dependent [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171340|emb|CBH27882.1| DNA helicase, ATP-dependent [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 731
Score = 225 bits (574), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 219/736 (29%), Positives = 349/736 (47%), Gaps = 117/736 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q + A PLLI+AG GSGK G++P NILA+TFT
Sbjct: 7 VDGLNPEQ-KRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ RIG+++G A+ + ISTFHS +++ R +++ F I G + ++I
Sbjct: 66 AAREMKSRIGNLMG-GEAESIWISTFHSMCVRILRRDIDRIGYERNFTIL-DGSDQLSVI 123
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ IL K + G + S+S+ K N+
Sbjct: 124 KG--------ILKEKNVDPKKFEPRG---------------ILASISNAK----NELITA 156
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ +ASG D++ + E Y L+ ALD+ DLI +++L P+V
Sbjct: 157 SEYIKEASG--------FYDKMVGEVYEKYEKKLKKNQALDFDDLIMVTIQLFERVPDVL 208
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ ++ I VDE+QDT+ QY L+++LAS + +VGD DQSI+ + GADIS SF
Sbjct: 209 EYYQRKFQYIHVDEYQDTNHAQYLLVKLLASRFKNLCVVGDSDQSIYGWRGADISNIMSF 268
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K I L NYRST+ I+EAA+ +I++N R + KN+ T N+ G KI + E
Sbjct: 269 EKDYPNAKTILLEENYRSTKRILEAANRVIENNGNR-KPKNLWTSNAEGKKIFYHKALTE 327
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ A+++ KI E +N + + AILYR +V + F + + + + G F
Sbjct: 328 KEEAAYVVMKIQEEVNNSSRPLSDF---AILYRTNAQSRVMEEYFMKSNMAYTMVGGTKF 384
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y +K ++ I+A LR DD R+ KR + T+ K + ++
Sbjct: 385 YDRKEIKDILAYLRLISNNEDDISLTRIINV--------PKRGVGP----GTLEKLNNVA 432
Query: 708 AACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLE 767
A D+ ++ + + ++ K+ L LVR + + SV +V + +LE
Sbjct: 433 TAYDLSLFEVLNRIELAGISA--KISKDLVAFHDLVRGFTQMQDFL-SVTELVEE--ILE 487
Query: 768 Q---RAVVDFDGGKLLNEDNDLRSV-LQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
+ RA+ L NE R++ Q L ++ +FLS KE ++DK
Sbjct: 488 KTGYRAM-------LKNE----RTIEAQTRLENIDEFLSVTQNFEKE----NEDK----- 527
Query: 824 VLKAFI-DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
L AF+ D + + + +VTL T+H +KGLE+ +VF+ E P
Sbjct: 528 TLIAFLTDLALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFP---- 583
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQPSRFLKEI 935
+ + +EEERRL YV +TRA ++LF+ LY +N Q SRF+ EI
Sbjct: 584 -HSRAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRMLYGRPSSN----QESRFIGEI 638
Query: 936 PHHLREVQAEQSVQDQ 951
P L E+ E ++ +
Sbjct: 639 PRDLLELANENKLKSE 654
>gi|417924279|ref|ZP_12567725.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK569]
gi|418967818|ref|ZP_13519455.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK616]
gi|342836066|gb|EGU70289.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK569]
gi|383342221|gb|EID20453.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK616]
Length = 763
Score = 225 bits (574), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 211/729 (28%), Positives = 338/729 (46%), Gaps = 115/729 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R ++ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYNL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R+ L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERSILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ ++E
Sbjct: 266 EKDYPQAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+ I E G + + A+LYR + + A + IP+ + G F
Sbjct: 325 LDEAVFVAKTIDEL---GRSQNFLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRK 702
Y +K +R IIA L D+ + R+ E KR ++ I + ++
Sbjct: 382 YSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANMQN 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S I A+ +I + I G +S +L E + +L SI+ ++ +V
Sbjct: 434 VSMIDASANIMLSGIKGKAAQSIWDFANMILDLREQLDQL-----SITELVEAV------ 482
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
LE+ +D +LN L S + + ++ +FLS T ++ + +++ +
Sbjct: 483 ---LEKTGYID-----ILNAQATLESKAR--VENIEEFLSV--TKNFDDTSDGPEEETGL 530
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 531 DKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGMEENVFPLSR- 586
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+ EI
Sbjct: 587 ----AAEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFINEI 638
Query: 936 PHHLREVQA 944
L E Q
Sbjct: 639 SSDLLEYQG 647
>gi|308235914|ref|ZP_07666651.1| putative ATP-dependent DNA helicase PcrA [Gardnerella vaginalis
ATCC 14018 = JCM 11026]
Length = 956
Score = 225 bits (574), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 230/828 (27%), Positives = 374/828 (45%), Gaps = 143/828 (17%)
Query: 185 HQNDNSCTHLNASLESVTTNENIRMDISMD-LAGDMKSSMEKTDTIQTIKT--------- 234
Q+D S + NA + N+++ ++S +AGD S + ++++Q+ +T
Sbjct: 19 EQSDASIS--NAPISDAPINKDMTSEVSASTVAGDF--SAKYSNSVQSSQTAQSSAAAQY 74
Query: 235 -------QNMPD-EYSKYLQSLNDQQLEAACGDMSTP-LLIVAGPGSGKG---------- 275
N+P+ L+ LN QQ +A + P LLI AG GSGK
Sbjct: 75 AQTSAQSSNIPEINPQSLLEGLNPQQSKAV--QYTGPALLIGAGAGSGKTRVLTRRIAWI 132
Query: 276 -----ISPSNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKL 330
PS ILA+TFT AA+EMR+R+ S++G +A + +STFHS +++ R+H + +
Sbjct: 133 LANRKAWPSQILAITFTNKAAAEMRERLASLIGN-SANSMWVSTFHSACVKILRAHGDSI 191
Query: 331 ERTSEFLIYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAM 390
S F IY R V+++ +E + +K+ + +L + + S F N +
Sbjct: 192 GLKSGFSIYDSSDCERL----VKIIASELNIDIKKFTPKLLLS-------KISDFKNNLV 240
Query: 391 LFFSMSSFKLCQYNKFERDGMDVAKASGKTPAEFRKIG--DEIGAAILENYNGILRSCNA 448
+ L Y + G V+ AS F G D + AA+ Y L NA
Sbjct: 241 TWQE----NLKNYAPDYKPGASVSGAS-----SFNAAGNADALYAAVYAEYQNRLSVSNA 291
Query: 449 LDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-------- 500
+D+ DLI +VKLL P+V Y+ ++ I+VDE+QDT+ QY L++ LA
Sbjct: 292 VDFDDLIMLTVKLLRQNPQVSAYYKRKFRYILVDEYQDTNHAQYVLIRELAGVDDAGVDD 351
Query: 501 ------------------HNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTR 542
+ IT+VGD DQSI++F GADI F +DF + I L +
Sbjct: 352 YSTDSTVSSVSPDSTQLPQSSITVVGDSDQSIYAFRGADIRNIQDFEQDFPSATTIMLEQ 411
Query: 543 NYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEH 602
NYRST+ I++AA+++I +N R + K + T GS I+ N + +++ +I
Sbjct: 412 NYRSTQTILDAANAVISNNANR-KPKKLWTSLGKGSPIVGYVADNAQGEASWVAQEIARL 470
Query: 603 ASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFYRKKVVRAIIAMLR 661
A +Y IAI+YR + + A + +P+ + G FY ++ V+ +A L+
Sbjct: 471 AGEDG---VNYSDIAIMYRANSQSRSLEDALIKSGLPYQLVGGTKFYERREVKDALAYLQ 527
Query: 662 TTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKIS--- 718
+ DD RR+ + ++ R I + SF SA I KI+
Sbjct: 528 SIANPDDDVNMRRILN---VPKRGLGARAESQITSYAKENSISFWSALSQI--DKIAEQI 582
Query: 719 GTFKRS--QLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDG 776
G R+ L R ++ +L K +PS V N++ + LL+
Sbjct: 583 GISSRTFNALKSFRDLMTSLIDFMKANDSKPS-----KVVENVLNESGLLQD-------- 629
Query: 777 GKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV-DQDKKGCINVLKAFIDYISER 835
L E D + + V + + AA+ E N D + G + D
Sbjct: 630 ---LRESKDPQDEFR-----VDNLSQLQSVAAEYEQNTPDANVAGFLETTALVAD----- 676
Query: 836 ETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVE 895
++ Q D VTL T+H +KGLE+ +VF+ + P + N+K +
Sbjct: 677 -SDQLPDQGEDT-GKVTLMTLHTAKGLEYPVVFLTGMEQGTFPHSRCVD---NQK--ELC 729
Query: 896 EERRLLYVAMTRARKKLFILYVMMDANW----QLLQPSRFLKEIPHHL 939
EERRL YV +TRA+K L++ + + W +++Q S+FL EIP L
Sbjct: 730 EERRLAYVGITRAKKILYVTWAAERSQWGKSAEMIQ-SQFLDEIPADL 776
>gi|301066102|ref|YP_003788125.1| superfamily I DNA and RNA helicase [Lactobacillus casei str. Zhang]
gi|300438509|gb|ADK18275.1| Superfamily I DNA and RNA helicase [Lactobacillus casei str. Zhang]
Length = 751
Score = 225 bits (574), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 210/724 (29%), Positives = 328/724 (45%), Gaps = 108/724 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ +ND+Q EA P+LI+AG GSGK ++P NILA+TFT
Sbjct: 7 LKGMNDKQSEAVLA-TEGPVLIMAGAGSGKTRVLTHRIAYLVEEKHVNPWNILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+G +V A+++ +STFH+ +++ R +KL F I +Q
Sbjct: 66 AAREMRERVGKLVDAEIARDIWVSTFHALCVRILRRDIDKLGYNRAFTIADPAEQ----- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER- 408
+ +VK I D F ++ + S K E
Sbjct: 121 ----------LTLVKHILAD---------------FNLDPKRYDPKSILGAISSAKNELV 155
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
+ A +P F K+ A + Y LRS ALD+ DLI ++ L E
Sbjct: 156 EPQTYANEQANSP--FTKVV----AQVYAEYQKRLRSDQALDFDDLIMQTIVLFEKDKET 209
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDS 527
YQ ++ I VDE+QDT+ QY L+ +LA ++ + +VGD DQSI+ + GA++
Sbjct: 210 LAFYQRKFRYIHVDEYQDTNEAQYQLVHMLAEGYHNLCVVGDADQSIYGWRGANMQNILD 269
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F+KD+ + I L +NYRST+ I+ AA+ +IQ+N R Q K + T+N G KI +
Sbjct: 270 FKKDYPKAQVILLEQNYRSTKTILSAANDVIQNNQNR-QAKTLWTENREGDKITYYRAQS 328
Query: 588 EDAQCAFIIDKI-LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
E + F+I +I E A N YG AILYR + + AF + IP+ + G
Sbjct: 329 ETDEAIFVIRRIEAEIADNH----RKYGDFAILYRTNAQSRAIEEAFVKSNIPYKMVGGH 384
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIR 701
FY +K +R +A R + DD + R+ E K+ + ++ ++ +
Sbjct: 385 KFYDRKEIRDALAYFRLVVNPEDDMSFNRIV-------NEPKRGIGNTSVEKLEAFANEH 437
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
S + AA + + I+G R QL + K MI +L R ++ A +
Sbjct: 438 DWSLLEAAANAELSPIAGK-ARGQLAKFGK------MIQELGTRRKDLNVTEMMQAILED 490
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
YL RA + + + +L SV Q F + + N D D
Sbjct: 491 SGYLSTLRAAHNLEADTRIENLEELLSVTQ------------GFDSRYQPENEDSD---- 534
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
F+D+++E + ++ VTL T+H +KGLE+ +VF+ E PL
Sbjct: 535 -----IFVDFLAELALLSDQDDVEEDAQEVTLMTLHAAKGLEFPVVFLVGMEEGLFPLSR 589
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHH 938
+ + +EEERRL YV +TRA++KL++ M+ Q SRF++EI
Sbjct: 590 -----ASMDESELEEERRLAYVGITRAKQKLYLSNAYGRMLYGQRQNNPASRFIEEINPD 644
Query: 939 LREV 942
L EV
Sbjct: 645 LLEV 648
>gi|422659915|ref|ZP_16722335.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. lachrymans
str. M302278]
gi|331018528|gb|EGH98584.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. lachrymans
str. M302278]
Length = 669
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 193/726 (26%), Positives = 327/726 (45%), Gaps = 125/726 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+AMTFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ + LT+STFH+ L + R +L F I+
Sbjct: 60 AAREMKERVGTLLKGGEGRGLTVSTFHNLGLNIIRKEHTRLGYKPGFSIFDETD------ 113
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
VK + TD++ + +S D
Sbjct: 114 -------------VKALMTDIMQKE------------------YSGD------------D 130
Query: 410 GMDVAK---ASGKT----PAEF----RKIGDEIGAAILENYNGILRSCNALDYHDLISCS 458
G+D K S K PAE R ++ A + +Y L++ NA+D+ DLI
Sbjct: 131 GVDEIKNMIGSWKNDLILPAEALENARNPKEQTAAIVYTHYQRTLKAYNAVDFDDLILVP 190
Query: 459 VKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSF 517
VKL P+V +++Q+ + ++VDE+QDT+A QY L+++L + N+ T+VGDDDQSI+++
Sbjct: 191 VKLFQEHPDVLEKWQNKVRYLLVDEYQDTNASQYLLVKLLIGTRNQFTVVGDDDQSIYAW 250
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GA + D+ + K + L +NYRST I+ A+ LI +N + K + ++ HG
Sbjct: 251 RGARPENLMLLKDDYPSLKVVMLEQNYRSTSRILRCANVLISNNPHAFE-KQLWSEMGHG 309
Query: 578 SKIIIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
+I + C NEDA+ + +I L ++ P Y AILYR K+ + +
Sbjct: 310 DEIRVIRCRNEDAEAERVAMEILTLHLRTDRP-----YSDFAILYRGNYQAKLIELKLQH 364
Query: 636 RKIPFNIHGV-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
++P+ + G +F+ ++ V+ ++A R + DD + RV + +E ++ +
Sbjct: 365 HQVPYRLSGGNSFFGRQEVKDLMAYFRLLVNPDDDNAFLRVIN---VPRREIGSTTLEKL 421
Query: 695 DKISTIRKCSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI 753
+T RK S +A +I G + + +L R + + V
Sbjct: 422 GNYATERKVSMYAATEEIGLGEHLDSRY-----------------TDRLQRFKRWMDGVR 464
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
A P L + V+D D L +++ Y +++V F +
Sbjct: 465 QQCAQNDPIAAL--RSMVMDIDYENWLRQNSSSEKAADYRMSNVW------FLIEALKNT 516
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+++D++G + + +A I + R+ + + D V + T+H SKGLE+ VF+
Sbjct: 517 LEKDEEGGMTIEEA-IGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGME 575
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSR 930
E +P + ++EEERRL YV +TRAR+ L + + + PSR
Sbjct: 576 EEILPHRSSI------EADTIEEERRLAYVGITRARQTLAFTFAAKRKQYGEIIDCAPSR 629
Query: 931 FLKEIP 936
FL E+P
Sbjct: 630 FLDELP 635
>gi|408373991|ref|ZP_11171682.1| DNA helicase II [Alcanivorax hongdengensis A-11-3]
gi|407766084|gb|EKF74530.1| DNA helicase II [Alcanivorax hongdengensis A-11-3]
Length = 725
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 197/733 (26%), Positives = 342/733 (46%), Gaps = 109/733 (14%)
Query: 239 DEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILA 283
D+ + + LN Q +A D LL++AG GSGK SP ILA
Sbjct: 2 DDVTSLIDGLNPAQRDAVAAD-DRHLLVLAGAGSGKTRVLVHRIAWQIATEQASPFGILA 60
Query: 284 MTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQ 343
+TFT AA+EMR RI ++ +A + + TFHS + +L RSH ++ F
Sbjct: 61 VTFTNKAAAEMRGRIEQLL-DMSADGMWVGTFHSIAHRLLRSHWQEAGLPQGF------- 112
Query: 344 QRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQY 403
II+A ++++ +VKR+ ++ + + +A+ F+
Sbjct: 113 ---EIIDA-----DDQVRLVKRVIKELGLDEQRWPGRQATWFI----------------- 147
Query: 404 NKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSC---NALDYHDLISCSVK 460
+ K G GD + + Y G +C +D+++++ ++
Sbjct: 148 --------NGQKDEGLRAKHMDANGDLFVQTMQKIYFGYEEACERGGLVDFNEMLLRVLE 199
Query: 461 LLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNG 519
L + YQ ++ I+VDEFQDT+++QY+ L++LA+ N +TIVGDDDQSI+ + G
Sbjct: 200 LFRDNDSLRGHYQRRFRHILVDEFQDTNSIQYAWLRLLANDDNAVTIVGDDDQSIYGWRG 259
Query: 520 ADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSK 579
A I F +DF + + IRL +NYRST I++AA+++I +N R K + TD G
Sbjct: 260 AKIENIHKFSRDFPDTRTIRLEQNYRSTGTILKAANAVIDNNSDRLG-KELWTDGGDGDP 318
Query: 580 IIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIP 639
I + NE + FI ++ +H+ G A IA+LYR +V + AF + IP
Sbjct: 319 IRLYAGFNEVDEARFIAGRVDKHSQEGTARR----DIAVLYRSNAQSRVLEEAFLQAGIP 374
Query: 640 FNIHGVA-FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIS 698
+ I+G F+ + ++ +A LR D + RV + + ++ + +++
Sbjct: 375 YRIYGGQRFFERAEIKNALAYLRLISNRHADAAFERVVNT---PTRGIGNKTLETLREVA 431
Query: 699 TIRKCSFISAACDIFGAKISGTFKRSQLTQGRKV---LLTLEMISKLVRREPSISAVITS 755
R+ S A I QL R + + L ++ +L ++ + T+
Sbjct: 432 RQRQISLWQAGQAIVS---------EQLLSARAINALAVFLNLVEQLAQQTEGLGLGETA 482
Query: 756 VANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVD 815
++ +E +V F + + L+ L++ DF E G D
Sbjct: 483 -------EHAIEASGLVAFHAKEKGEKGQQRIENLRELVSATRDFSEV------ERGEED 529
Query: 816 QDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANET 875
+D + ++ L AF+D+ + E Q +E++V + T+H +KGLE+ +VF+ E
Sbjct: 530 EDSE--LDSLTAFLDHAA---LESGEGQADAHEDAVQMMTLHSAKGLEFPVVFITGMEEG 584
Query: 876 EIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFL 932
P H+ + +E+ + EERRL YV +TRA+++L++ + + N PSRF+
Sbjct: 585 LFP--HQMS---SEEPGRLAEERRLCYVGLTRAKRELYLTHAESRRLYGNENYNPPSRFI 639
Query: 933 KEIPHHL-REVQA 944
+EIP L EV+A
Sbjct: 640 REIPAELIEEVRA 652
>gi|311114987|ref|YP_003986208.1| ATP-dependent DNA helicase PcrA [Gardnerella vaginalis ATCC 14019]
gi|310946481|gb|ADP39185.1| ATP-dependent DNA helicase PcrA [Gardnerella vaginalis ATCC 14019]
Length = 964
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 230/828 (27%), Positives = 374/828 (45%), Gaps = 143/828 (17%)
Query: 185 HQNDNSCTHLNASLESVTTNENIRMDISMD-LAGDMKSSMEKTDTIQTIKT--------- 234
Q+D S + NA + N+++ ++S +AGD S + ++++Q+ +T
Sbjct: 27 EQSDASIS--NAPISDAPINKDMTSEVSASTVAGDF--SAKYSNSVQSSQTAQSSAAAQY 82
Query: 235 -------QNMPD-EYSKYLQSLNDQQLEAACGDMSTP-LLIVAGPGSGKG---------- 275
N+P+ L+ LN QQ +A + P LLI AG GSGK
Sbjct: 83 AQTSAQSSNIPEINPQSLLEGLNPQQSKAV--QYTGPALLIGAGAGSGKTRVLTRRIAWI 140
Query: 276 -----ISPSNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKL 330
PS ILA+TFT AA+EMR+R+ S++G +A + +STFHS +++ R+H + +
Sbjct: 141 LANRKAWPSQILAITFTNKAAAEMRERLASLIGN-SANSMWVSTFHSACVKILRAHGDSI 199
Query: 331 ERTSEFLIYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAM 390
S F IY R V+++ +E + +K+ + +L + + S F N +
Sbjct: 200 GLKSGFSIYDSSDCERL----VKIIASELNIDIKKFTPKLLLS-------KISDFKNNLV 248
Query: 391 LFFSMSSFKLCQYNKFERDGMDVAKASGKTPAEFRKIG--DEIGAAILENYNGILRSCNA 448
+ L Y + G V+ AS F G D + AA+ Y L NA
Sbjct: 249 TW----QENLKNYAPDYKPGASVSGAS-----SFNAAGNADALYAAVYAEYQNRLSVSNA 299
Query: 449 LDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-------- 500
+D+ DLI +VKLL P+V Y+ ++ I+VDE+QDT+ QY L++ LA
Sbjct: 300 VDFDDLIMLTVKLLRQNPQVSAYYKRKFRYILVDEYQDTNHAQYVLIRELAGVDDAGVDD 359
Query: 501 ------------------HNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTR 542
+ IT+VGD DQSI++F GADI F +DF + I L +
Sbjct: 360 YSTDSTVSSVSPDSTQLPQSSITVVGDSDQSIYAFRGADIRNIQDFEQDFPSATTIMLEQ 419
Query: 543 NYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEH 602
NYRST+ I++AA+++I +N R + K + T GS I+ N + +++ +I
Sbjct: 420 NYRSTQTILDAANAVISNNANR-KPKKLWTSLGKGSPIVGYVADNAQGEASWVAQEIARL 478
Query: 603 ASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFYRKKVVRAIIAMLR 661
A +Y IAI+YR + + A + +P+ + G FY ++ V+ +A L+
Sbjct: 479 AGEDG---VNYSDIAIMYRANSQSRSLEDALIKSGLPYQLVGGTKFYERREVKDALAYLQ 535
Query: 662 TTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKIS--- 718
+ DD RR+ + ++ R I + SF SA I KI+
Sbjct: 536 SIANPDDDVNMRRILN---VPKRGLGARAESQITSYAKENSISFWSALSQI--DKIAEQI 590
Query: 719 GTFKRS--QLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDG 776
G R+ L R ++ +L K +PS V N++ + LL+
Sbjct: 591 GISSRTFNALKSFRDLMTSLIDFMKANDSKPS-----KVVENVLNESGLLQD-------- 637
Query: 777 GKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV-DQDKKGCINVLKAFIDYISER 835
L E D + + V + + AA+ E N D + G + D
Sbjct: 638 ---LRESKDPQDEFR-----VDNLSQLQSVAAEYEQNTPDANVAGFLETTALVAD----- 684
Query: 836 ETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVE 895
++ Q D VTL T+H +KGLE+ +VF+ + P + N+K +
Sbjct: 685 -SDQLPDQGEDT-GKVTLMTLHTAKGLEYPVVFLTGMEQGTFPHSRCVD---NQK--ELC 737
Query: 896 EERRLLYVAMTRARKKLFILYVMMDANW----QLLQPSRFLKEIPHHL 939
EERRL YV +TRA+K L++ + + W +++Q S+FL EIP L
Sbjct: 738 EERRLAYVGITRAKKILYVTWAAERSQWGKSAEMIQ-SQFLDEIPADL 784
>gi|15675225|ref|NP_269399.1| DNA helicase II [Streptococcus pyogenes SF370]
gi|21910437|ref|NP_664705.1| DNA helicase II [Streptococcus pyogenes MGAS315]
gi|28896013|ref|NP_802363.1| DNA helicase II [Streptococcus pyogenes SSI-1]
gi|71910790|ref|YP_282340.1| DNA helicase II [Streptococcus pyogenes MGAS5005]
gi|94988710|ref|YP_596811.1| DNA helicase II [Streptococcus pyogenes MGAS9429]
gi|94992533|ref|YP_600632.1| DNA helicase II [Streptococcus pyogenes MGAS2096]
gi|386362787|ref|YP_006072118.1| ATP-dependent DNA helicase PcrA [Streptococcus pyogenes Alab49]
gi|410680645|ref|YP_006933047.1| ATP-dependent DNA helicase PcrA [Streptococcus pyogenes A20]
gi|417856784|ref|ZP_12501843.1| ATP-dependent DNA helicase PcrA [Streptococcus pyogenes HKU
QMH11M0907901]
gi|13622394|gb|AAK34120.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes M1 GAS]
gi|21904635|gb|AAM79508.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes
MGAS315]
gi|28811263|dbj|BAC64196.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes SSI-1]
gi|71853572|gb|AAZ51595.1| DNA helicase II [Streptococcus pyogenes MGAS5005]
gi|94542218|gb|ABF32267.1| DNA helicase II [Streptococcus pyogenes MGAS9429]
gi|94546041|gb|ABF36088.1| DNA helicase II [Streptococcus pyogenes MGAS2096]
gi|350277196|gb|AEQ24564.1| ATP-dependent DNA helicase PcrA [Streptococcus pyogenes Alab49]
gi|387933739|gb|EIK41852.1| ATP-dependent DNA helicase PcrA [Streptococcus pyogenes HKU
QMH11M0907901]
gi|409693234|gb|AFV38094.1| ATP-dependent DNA helicase PcrA [Streptococcus pyogenes A20]
Length = 772
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 203/724 (28%), Positives = 331/724 (45%), Gaps = 114/724 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q +A PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAQA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R ++ K+ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKER--ALALNPATKDTLIATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+L+ I K +L T S + L +E
Sbjct: 121 --KRILKQLNIDPKKWNERSILGT-------------------ISNAKNDLLDEKGYEAQ 159
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D+ +I A + Y LR ALD+ DLI +++L P+V
Sbjct: 160 AADMYS--------------QIVARCYKAYQEELRRSEALDFDDLIMMTLRLFDANPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 AYYQQRYQYIHVDEYQDTNHAQYQLIKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + K + L NYRST+ I++AA+ +I +N R + K + T N+ G +++ ++E
Sbjct: 266 EKDYPDAKVVLLEENYRSTKKILQAANDVINNNRNR-RPKKLWTQNADGEQLVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASIC-SYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
+ F+ I SN + ++ A+LYR + + A + IP+ + G
Sbjct: 325 RDEAVFVASTI----SNMSQELGKNFKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTK 380
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIRK 702
FY +K +R +IA L D+ + R+ E K+ V +D + + +
Sbjct: 381 FYSRKEIRDLIAYLTIVANPADNISFERIV-------NEPKRGVGPGTLDKLRQFAYESD 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + AA ++ + + G + + ++ L I +R++ IT +A
Sbjct: 434 QSLLEAASNLLMSPLKG--------KAAQAIMDLANILGQLRQDLD-QMSITDLA----- 479
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
+ LLE+ +D L N L S Q + ++ +FLS + + ++D+ G
Sbjct: 480 EALLEKTGYLDS-----LRLQNTLES--QARIENIEEFLSVTKNFDESSASQEEDETGVD 532
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ + D +T+ + + + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 533 RLGRFLNDLALIADTDDSQAEAAE----VTLMTLHAAKGLEFPVVFLIGMEEGVFPLSR- 587
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
+E +EEERRL YV +TRA + LF M +AN + L +P+RFLKEI
Sbjct: 588 ----ASEDPDELEEERRLAYVGITRAEEVLF----MTNANTRTLFGKSSYNRPTRFLKEI 639
Query: 936 PHHL 939
L
Sbjct: 640 SEEL 643
>gi|347549158|ref|YP_004855486.1| putative ATP-dependent DNA helicase [Listeria ivanovii subsp.
ivanovii PAM 55]
gi|346982229|emb|CBW86223.1| Putative ATP-dependent DNA helicase [Listeria ivanovii subsp.
ivanovii PAM 55]
Length = 731
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 220/736 (29%), Positives = 349/736 (47%), Gaps = 117/736 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q + A PLLI+AG GSGK G++P NILA+TFT
Sbjct: 7 VDGLNPEQ-KRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ RIG+++G A+ + ISTFHS +++ R +++ F I G + ++I
Sbjct: 66 AAREMKSRIGNLMG-GEAESIWISTFHSMCVRILRRDIDRIGYERNFTIL-DGSDQLSVI 123
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ IL K + G + S+S+ K N+
Sbjct: 124 KG--------ILKEKNVDPKKFEPRG---------------ILASISNAK----NELITA 156
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
V +ASG D++ + E Y L+ ALD+ DLI +++L P+V
Sbjct: 157 SEYVKEASG--------FYDKMVGEVYEKYEKKLKKNQALDFDDLIMVTIQLFERVPDVL 208
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ ++ I VDE+QDT+ QY L+++LAS + +VGD DQSI+ + GADIS SF
Sbjct: 209 EYYQRKFQYIHVDEYQDTNHAQYLLVKLLASRFKNLCVVGDSDQSIYGWRGADISNIMSF 268
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K I L NYRST+ I+EAA+ +I++N R + KN+ T N+ G KI + E
Sbjct: 269 EKDYPNAKTILLEENYRSTKRILEAANRVIENNGNR-KPKNLWTSNAEGKKIFYHKALTE 327
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ A+++ KI E +N + + AILYR +V + F + + + + G F
Sbjct: 328 KEEAAYVVMKIQEEVNNSSRPLSDF---AILYRTNAQSRVMEEYFMKSNMAYTMVGGTKF 384
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y +K ++ I+A LR DD R+ KR + T+ K + ++
Sbjct: 385 YDRKEIKDILAYLRLISNNEDDISLTRIINV--------PKRGVGP----GTLEKLNNVA 432
Query: 708 AACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLE 767
A D+ ++ + + ++ K+ L LVR + + SV +V + +LE
Sbjct: 433 TAYDLSLFEVLNRIELAGISA--KISKDLVAFHDLVRGFTQMQDFL-SVTELVEE--ILE 487
Query: 768 Q---RAVVDFDGGKLLNEDNDLRSV-LQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
+ RA+ L NE R++ Q L ++ +FLS KE ++DK
Sbjct: 488 KTGYRAM-------LKNE----RTIEAQTRLENIDEFLSVTQNFEKE----NEDK----- 527
Query: 824 VLKAFI-DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
L AF+ D + + + +VTL T+H +KGLE+ +VF+ E P
Sbjct: 528 TLIAFLTDLALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFP---- 583
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQPSRFLKEI 935
+ + +EEERRL YV +TRA ++LF+ LY +N Q SRF+ EI
Sbjct: 584 -HSRAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRMLYGRPYSN----QESRFIGEI 638
Query: 936 PHHLREVQAEQSVQDQ 951
P L E+ E ++ +
Sbjct: 639 PRDLLELANENKLKSE 654
>gi|307704751|ref|ZP_07641647.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK597]
gi|307621660|gb|EFO00701.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK597]
Length = 763
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 219/736 (29%), Positives = 332/736 (45%), Gaps = 129/736 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ +E
Sbjct: 266 EKDYPQAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRADDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+ I E G + + A+LYR + + A + IP+ + G F
Sbjct: 325 LDEAVFVARTIDEL---GRSQNFLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRK 702
Y +K +R IIA L D+ + R+ E KR ++ I + ++
Sbjct: 382 YSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANTQE 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ +I + I G +S +L E + L SI+ ++ SV
Sbjct: 434 MSMLDASANIMLSGIKGKAAQSIWDFANMILDLREQLDHL-----SITELVESV------ 482
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFT------AAKEEGNVDQ 816
LE+ VD +LN L S + + ++ +FLS A+EE +D+
Sbjct: 483 ---LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVTKNFDDTSDVAEEETGLDK 532
Query: 817 DKKGCINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIHQSKGLEWDIVFVAKANET 875
+ +N L D T E S VTL T+H +KGLE+ +VF+ E
Sbjct: 533 LSR-FLNDLALIAD-----------TDSGSQETSEVTLMTLHAAKGLEFPVVFLIGMEEN 580
Query: 876 EIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QP 928
PL E +EEERRL YV +TRA K ILY + +AN +LL +P
Sbjct: 581 VFPLSR-----AAEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRP 631
Query: 929 SRFLKEIPHHLREVQA 944
+RF+ EI L E Q
Sbjct: 632 TRFINEISSDLLEYQG 647
>gi|19746195|ref|NP_607331.1| DNA helicase II [Streptococcus pyogenes MGAS8232]
gi|19748377|gb|AAL97830.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes
MGAS8232]
Length = 772
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 203/724 (28%), Positives = 331/724 (45%), Gaps = 114/724 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q +A PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAQA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R ++ K+ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKER--ALALNPATKDTLIATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+L+ I K +L T S + L +E
Sbjct: 121 --KRILKQLNIDPKKWNERSILGT-------------------ISNAKNDLLDEKGYEAQ 159
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D+ +I A + Y LR ALD+ DLI +++L P+V
Sbjct: 160 AADMYS--------------QIVARCYKAYQEELRRSEALDFDDLIMMTLRLFDANPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 AYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + K + L NYRST+ I++AA+ +I +N R + K + T N+ G +++ ++E
Sbjct: 266 EKDYPDAKVVLLEENYRSTKKILQAANDVINNNRNR-RPKKLWTQNADGEQLVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASIC-SYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
+ F+ I SN + ++ A+LYR + + A + IP+ + G
Sbjct: 325 RDEAVFVASTI----SNMSQELGKNFKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTK 380
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIRK 702
FY +K +R +IA L D+ + R+ E K+ V +D + + +
Sbjct: 381 FYSRKEIRDLIAYLTIVANPADNISFERIV-------NEPKRGVGPGTLDKLRQFAYESD 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + AA ++ + + G + + ++ L I +R++ IT +A
Sbjct: 434 QSLLEAASNLLMSPLKG--------KAAQAIMDLANILGQLRQDLD-QMSITDLA----- 479
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
+ LLE+ +D L N L S Q + ++ +FLS + + ++D+ G
Sbjct: 480 EALLEKTGYLDS-----LRLQNTLES--QARIENIEEFLSVTKNFDESSASQEEDETGVD 532
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ + D +T+ + + + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 533 RLGRFLNDLALIADTDDSQAEASE----VTLMTLHAAKGLEFPVVFLIGMEEGVFPLSR- 587
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
+E +EEERRL YV +TRA + LF M +AN + L +P+RFLKEI
Sbjct: 588 ----ASEDPDELEEERRLAYVGITRAEEVLF----MTNANTRTLFGKSSYNRPTRFLKEI 639
Query: 936 PHHL 939
L
Sbjct: 640 SEEL 643
>gi|436838847|ref|YP_007324063.1| UvrD/REP helicase [Fibrella aestuarina BUZ 2]
gi|384070260|emb|CCH03470.1| UvrD/REP helicase [Fibrella aestuarina BUZ 2]
Length = 766
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 216/727 (29%), Positives = 341/727 (46%), Gaps = 123/727 (16%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
Y+ LND Q EA + PL+I+AG GSGK G+ P ILA+TFT
Sbjct: 4 YIAGLNDPQREAVVHG-NGPLMIIAGAGSGKTRVLTYRIAHLIDKGVDPFRILALTFTNK 62
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQR---R 346
AA EMR RI ++G A+ + + TFHS ++ R A+ L TS F IY + R
Sbjct: 63 AAGEMRHRIEKVIGN-EARNIWMGTFHSVFAKILRIEAQALGYTSNFSIYDTDDSKSLLR 121
Query: 347 AIIEAVRLLENE--KILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYN 404
+II + L + + V RIS G A +++N ++
Sbjct: 122 SIIREMGLDDKQYRANAVFNRISGAKNRLVG------AEEYLLNPII------------- 162
Query: 405 KFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLST 464
+S K P E+G I + Y + NA+D+ DL+ + L
Sbjct: 163 -------QADDSSAKMP--------EVG-RIYKEYARRCFAANAMDFDDLLFNTNVLFRD 206
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADIS 523
++ +YQ ++ ++VDEFQDT+ QY + + LA+ H I +VGDD QSI++F GA+I
Sbjct: 207 HLDILHKYQHKFQHVLVDEFQDTNVSQYLITRKLAAVHQNICVVGDDAQSIYAFRGANIE 266
Query: 524 GFDSFRKDFL--NYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQL-KNVQTDNSHGSKI 580
+F+KD+ K ++L +NYRST IV+AA+S+I N R QL K V TDN G I
Sbjct: 267 NILNFQKDYGKDTVKIVKLEQNYRSTNTIVQAANSVIARN--RNQLEKRVFTDNETGPLI 324
Query: 581 IIKECHNEDAQCAFIIDKILE-HASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIP 639
+ + +++ + + + I E G AILYR + F+ A R+ I
Sbjct: 325 EVIKAASDNEEGRLVANGIFEAKVQQG----LRNNDFAILYRTNAQSRAFEEALRKLSIK 380
Query: 640 FN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIS 698
+ I G++FY++K ++ +IA LR T+ D+ ++R+ K+ + D +
Sbjct: 381 YRIIGGLSFYQRKEIKDLIAYLRFTVNQADEEAFKRIINL-------PKRGIGD-----T 428
Query: 699 TIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
T+ K + +++ ++ +I S GR ++ +E ++L++ S
Sbjct: 429 TLAKIAVLASEKNVPIWEIVSNI--SLYVAGR-AMMAIEGFAELIK----------SFGL 475
Query: 759 MVPQKYLLEQRAVVDFDGGKL--LNEDNDLRSVLQY-----LLADVTDFLSTKFTAAKEE 811
M+ +K E A V G L L ED + + +Y LL + +F+ T
Sbjct: 476 MLDKKDAYEVAAHVAKSSGILKELYEDKTVEGLARYENVQELLNAIKEFVDNPET----- 530
Query: 812 GNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAK 871
+DK L +F+ +S T + DN+ VTL TIH +KGLE+ V +
Sbjct: 531 ----EDKS-----LSSFLQTVSLLTTADEKEDDGDND-KVTLMTIHAAKGLEFKNVHIVG 580
Query: 872 ANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQP 928
E P + + E +EEERRL YVA+TRA KKL + ++ +L +P
Sbjct: 581 LEEDLFP-----SQMMLESRADLEEERRLFYVAITRAEKKLTFSFAESRYHYGRLKLCEP 635
Query: 929 SRFLKEI 935
SRFL E+
Sbjct: 636 SRFLMEV 642
>gi|297242864|ref|ZP_06926802.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis AMD]
gi|296889075|gb|EFH27809.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis AMD]
Length = 981
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 211/741 (28%), Positives = 336/741 (45%), Gaps = 108/741 (14%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFT 287
K L LN QQ +A D LLI AG GSGK G PS ILA+TFT
Sbjct: 105 KLLDGLNSQQSQAVQYD-GPALLIGAGAGSGKTRVLTRRIAWILSQKGAWPSQILAITFT 163
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA+EMR+R+ +++G + A + +STFHS +++ R + + S F IY R
Sbjct: 164 NKAAAEMRERLSNLIG-SEANTMWVSTFHSACVKILRRSGQYIGLKSGFSIYDTSDCERL 222
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
V+++ E + +KR + + G + SL L + +K
Sbjct: 223 ----VKIIATELNVDIKRFTPRSIL--GKISDCKNSLITWREQLDMYANDYKPGVA---- 272
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
G +A A G + A + A I Y L NA+D+ DLI +V+L+ PE
Sbjct: 273 --GQQIAHA-GNSEAVY--------ATIYAEYQHRLSQANAVDFDDLIMRTVQLMREVPE 321
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-----------------------RI 504
Q Y+ ++ I+VDE+QDT+ QY L++ LA + I
Sbjct: 322 AAQYYRHKFRYILVDEYQDTNHAQYELIRELAGVDVKQNNAYAKQNNANTSQQNSTPASI 381
Query: 505 TIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKR 564
T+VGD DQSI++F GADI F KDF N I L +NYRST+ I++AA+++I HN R
Sbjct: 382 TVVGDSDQSIYAFRGADIRNIQDFEKDFPNATTIMLEQNYRSTQTILDAANAVISHNQGR 441
Query: 565 CQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQV 624
+ K + T G+ I + + A++ +I A G + Y +AI+YR
Sbjct: 442 -KPKKLWTALGKGAPITGYAADSAQQEAAWVAQEIARLA--GEEGVA-YSDMAIMYRANA 497
Query: 625 SGKVFQTAFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLE 683
+ + A + +P+ + G FY ++ V+ +A L++ DD RR+ + +
Sbjct: 498 QSRSLEDALVKAGLPYQLVGGTKFYERREVKDALAYLQSMANPDDDVNMRRILN---VPK 554
Query: 684 KEEKKRVIDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLV 743
+ R + + + SF A + + T ++L + R+++ L I+ +
Sbjct: 555 RGLGARAEALLTLYAQTQGVSFWQALEHLESIEGMPTRTATKLKEFRELMHNL--ITCMQ 612
Query: 744 RREPSISAVITSVANMVPQKYLLE--QRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFL 801
+ S VI S+ N LLE QR+ D ++ D S LQ + A+
Sbjct: 613 NDDSKPSKVIDSILN---DSGLLEDLQRSEDPQDAARV-----DNLSQLQSVAAEY---- 660
Query: 802 STKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKG 861
E+ D G + D ++ + D VTL T+H +KG
Sbjct: 661 --------EQNTPDASVAGFLETTALVAD------SDQLPDENEDT-GKVTLMTLHTAKG 705
Query: 862 LEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDA 921
LE+ +VF+ + P + A+ + G + EERRL YV +TRA+++L++ + A
Sbjct: 706 LEYPVVFLTGMEQGTFP----HSRALEDDG-ELCEERRLAYVGITRAKQRLYVTRAAVRA 760
Query: 922 NW---QLLQPSRFLKEIPHHL 939
W Q + PS+FL EIP +L
Sbjct: 761 QWGQAQDMLPSQFLDEIPDNL 781
>gi|168491981|ref|ZP_02716124.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
CDC0288-04]
gi|183573779|gb|EDT94307.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
CDC0288-04]
Length = 763
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 213/731 (29%), Positives = 336/731 (45%), Gaps = 119/731 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+L+ + KR +L T S + L
Sbjct: 121 --KRILKQLNLDPKKRNERTILGT-------------------ISNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ +E
Sbjct: 266 EKDYPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRADDE 324
Query: 589 DAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
+ F+ I L + N + A+LYR + + A + IP+ + G
Sbjct: 325 LDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGT 379
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTI 700
FY +K +R IIA L D+ + R+ E KR ++ I + +
Sbjct: 380 KFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGLGTVEKIRDFANL 431
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
+ S + A+ +I + I G +S +L E + L SI+ ++ SV
Sbjct: 432 QNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITELVESV---- 482
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
LE+ VD +LN L S + + ++ +FLS + +V +++ G
Sbjct: 483 -----LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTTDVTEEETG 529
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 530 -LDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGMEENVFPLS 585
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLK 933
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 586 R-----ATEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFIN 636
Query: 934 EIPHHLREVQA 944
EI L E Q
Sbjct: 637 EISSDLLEYQG 647
>gi|406040607|ref|ZP_11047962.1| ATP-dependent DNA helicase [Acinetobacter ursingii DSM 16037 = CIP
107286]
Length = 679
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 203/722 (28%), Positives = 333/722 (46%), Gaps = 116/722 (16%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAAS 292
LND+QLEA PLL++AG GSGK I I AMTFT AA
Sbjct: 7 LNDKQLEA-MKYTQGPLLVLAGAGSGKTSVITQKIAYLVKNCRIPAHRITAMTFTNKAAR 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G ++ + K L++STFH+F L L R + + F +I++A
Sbjct: 66 EMKERVGKLLSREEGKGLSVSTFHTFGLNLLRLELKHTPLKNNF----------SILDAD 115
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
KRI D++ D G L A +S +K + +
Sbjct: 116 D---------CKRILMDLMQRDNLSGAESKELI---AKAMKKISDWK---------NDLI 154
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
V + + T + D A + + Y LR+ NA+D+ DLI +LL EV ++
Sbjct: 155 VPEQAHST---CETVEDVQFAHLYQLYERNLRAYNAVDFDDLIVLPTRLLQENAEVRDKW 211
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L+++L + T VGDDDQSI+++ GA ++D
Sbjct: 212 QNRTRYLLVDEYQDTNTAQYILVKLLVGVMGQFTAVGDDDQSIYAWRGAKPENMALLKED 271
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F N K I+L +NYRST I++AA+++I++N K + +D HG I I C N+D +
Sbjct: 272 FPNLKVIKLEQNYRSTSRILKAANAVIENNPHIFD-KKLWSDKGHGEVIRIITCRNDDDE 330
Query: 592 CAFIIDKILEHA-SNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYR 649
++ ++ H NG ++ A+LYR +V +T R+ +IP+ + G +F+
Sbjct: 331 AERVVKDLMTHKLMNGK----NWKDYAVLYRGNFQARVLETQLRQMQIPYKLSGGQSFFA 386
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI-----DHIDKISTIRKCS 704
+ ++ +++ LR + DD + R+ KR I + + S S
Sbjct: 387 RAEIKDVMSYLRLIINPEDDSAFLRIINT--------PKRAIGPVTLEKLGLFSQENHLS 438
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK- 763
+ AA D ++S + TQ + + IS R + V M+ +
Sbjct: 439 LLGAASD---QRLSVVIPKKAATQLHEF---ADFISTFTRELMDDDEPVPKVRQMMNEAG 492
Query: 764 ---YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
Y+ E A + KL N +N L S +Q LL D D+K
Sbjct: 493 YIDYIRETAATPAQEKTKLDNIEN-LFSSIQGLLNRTEDV----------------DEKN 535
Query: 821 CINVLKAFI--DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
+V++ + D + +++ E ++ + V L T+H +KGLE+ V++ E +P
Sbjct: 536 IESVIRKLVLLDMLEQQQEE-------EDTDKVNLLTLHAAKGLEFPFVYIMGLEEELLP 588
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDAN---WQLLQPSRFLKEI 935
H+ + A ++EEERRL+YV +TRAR+ L + N + + PSRFL E+
Sbjct: 589 --HKNSIA----AETIEEERRLMYVGITRARQGLTLTLAEQRKNGGQMKQMTPSRFLDEL 642
Query: 936 PH 937
P
Sbjct: 643 PQ 644
>gi|421277621|ref|ZP_15728440.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SPAR10]
gi|395874873|gb|EJG85955.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SPAR10]
Length = 762
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 205/737 (27%), Positives = 337/737 (45%), Gaps = 131/737 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LKGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R + ++ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKERAYGL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLMK 121
Query: 350 EAVRLLE------NEKILV--VKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
++ L NE+ ++ + D++
Sbjct: 122 RILKQLNLDPKKWNERTILGTISNAKNDLID----------------------------- 152
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
DVA A A+ + +I A Y LR ++D+ DLI +++L
Sbjct: 153 ----------DVAYA-----AQAGDMYTQIVAKCYTAYQKELRQSESVDFDDLIMLTLRL 197
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGA 520
P+V YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GA
Sbjct: 198 FDQNPDVLTYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFQNICVVGDADQSIYGWRGA 257
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
D+ F KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I
Sbjct: 258 DMQNILDFEKDYPKAKVVLLEENYRSTKTILQAANDVIKNNKNR-RPKNLWTQNADGEQI 316
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
+ ++E + F+ I E G + + A+LYR + + A + IP+
Sbjct: 317 VYYRANDEQDEAVFVAKTIDEL---GRSQNFLHKDFAVLYRTNAQSRTIEEALLKSNIPY 373
Query: 641 N-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHI 694
+ G FY +K +R IIA L D+ + R+ E KR ++ I
Sbjct: 374 TMVGGTKFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKI 425
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+ ++ S + A+ +I + I G +S +L + + +L SI+ ++
Sbjct: 426 RDFANLQNMSMLDASANIMLSGIKGKAAQSIWDFANMILDLRDQLDQL-----SITELVE 480
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
+V LE+ VD +LN L S + + ++ +FLS T ++
Sbjct: 481 AV---------LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSV--TKNFDDNPD 522
Query: 815 DQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
+Q+++ ++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E
Sbjct: 523 NQEEETGLDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGMEE 579
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------Q 927
PL E +EEERRL YV +TRA K ILY + +AN +LL +
Sbjct: 580 NVFPLSR-----AAEDMDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNR 630
Query: 928 PSRFLKEIPHHLREVQA 944
P+RF+ EI L Q
Sbjct: 631 PTRFINEISSDLLTYQG 647
>gi|312884785|ref|ZP_07744483.1| ATP-dependent DNA helicase Rep [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367552|gb|EFP95106.1| ATP-dependent DNA helicase Rep [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 672
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 198/734 (26%), Positives = 350/734 (47%), Gaps = 97/734 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN Q + A +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNTNQ-DQAVKFVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G +GK AK L +STFH+ L + + + L + F ++
Sbjct: 62 EMKERVGQTLGKNEAKGLMVSTFHTLGLNIIKREYKTLGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ DG +R L ++S++K D +
Sbjct: 110 ---DQDQMALLKELTEQQF--DGDKDLLR--------QLMSTISNWK--------NDMLT 148
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
+AS E + ++ A Y +++ NALD+ DLIS V+LL + PEV +
Sbjct: 149 PEQASVMAQGEQQ----QVFAQCFSLYQKQMKAYNALDFDDLISLPVQLLKSSPEVRSRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQ-ILASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L++ I+ R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QNRIRYLLVDEYQDTNTSQYDLVKLIVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGQD 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
+ N + I+L +NYRST I+ AA+ LI +N + K + ++ G K+ + + NE+ +
Sbjct: 265 YPNLRLIKLEQNYRSTSRILRAANVLIANNPHVYE-KKLFSEIPDGEKLKLLKAKNEEHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +++ H + Y AILYR ++ + + + +IP+ + G +F+ +
Sbjct: 324 AERVTGELIAHKF---LNRTDYRDYAILYRGNHQSRLIEKSLMQNRIPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A L+ + DD + R+ +E ++ + + +R S A+
Sbjct: 381 AEIKDIMAYLKVLVNPDDDNAFLRIVNT---PRREIGPVTLEKLGSYANMRGKSLFEAS- 436
Query: 711 DIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRA 770
F + + L R+ L I+ R ++ AV V ++ + +L E
Sbjct: 437 --FELGLEQSLSGRGLEHLRRFTTWLVKIADQAERGDTVEAVRALVRDIHYEDWLYETST 494
Query: 771 VVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAFI 829
+ + +V+D S + A EG N DQ++K LK +
Sbjct: 495 SP---------------KAAEMRMKNVSDLYS--WIVADLEGDNYDQEEKN----LKEVV 533
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
++ R+ R + D+ ++V L T+H SKGLE+ V++ A E +P H+ +++E
Sbjct: 534 QRLTLRDMME-RGEEDDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILP--HQ--TSIDE 588
Query: 890 KGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAEQ 946
+VEEERRL+YV +TRA+++L F + +L++P SRFL E+P + + E+
Sbjct: 589 D--NVEEERRLMYVGITRAQRELTFTMCKERRQFGELIKPTQSRFLDELPFDDVDWEHEK 646
Query: 947 SVQDQHENIPEGTA 960
Q E + +G A
Sbjct: 647 KPVSQEERMAKGQA 660
>gi|297544110|ref|YP_003676412.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296841885|gb|ADH60401.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 711
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 222/725 (30%), Positives = 349/725 (48%), Gaps = 126/725 (17%)
Query: 245 LQSLNDQQLEAACGDMST--PLLIVAGPGSGK---------------GISPSNILAMTFT 287
L +LND+Q EA M+T PLLI+AG GSGK ISPSNILA+TFT
Sbjct: 5 LNNLNDKQKEAV---MTTEGPLLILAGAGSGKTRVLTHRIAYLIKEKKISPSNILAITFT 61
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM+ R+ ++G +L +STFHS S+++ R +K+ F+I+ Q+
Sbjct: 62 NKAAEEMKTRVEELLG--YIGDLWVSTFHSASVRILRRDIDKIGYDRNFVIFDTTDQKAL 119
Query: 348 IIEAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
I E ++ L +EK VK + +NA+ SS
Sbjct: 120 IQECLKELNLSEKQYPVKTV--------------------LNAI-----SS--------- 145
Query: 407 ERDGMDVAKASGKTPAEFRKI-GDEIGAA----ILENYNGILRSCNALDYHDLISCSVKL 461
AK TP E+ + G+E + I + Y L+ NALD+ D+I +++L
Sbjct: 146 -------AKDKMVTPEEYIHVFGNEYRSKKISEIYKLYQKKLKKNNALDFDDIIIKTIEL 198
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGA 520
PEV YQ +K I+VDE+QDT+ QY + +LA R + +VGDDDQSI+ + GA
Sbjct: 199 FKESPEVLDFYQRKFKYIMVDEYQDTNMPQYHFVNMLAQKYRNLCVVGDDDQSIYGWRGA 258
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
D+ +F KD+ K I+L +NYRST+ I+EAA+ +I +N++R + K + T+N G KI
Sbjct: 259 DVGNILNFEKDYPEAKVIKLEQNYRSTKTILEAANYVIDNNIRRKK-KTLWTNNEQGEKI 317
Query: 581 IIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKI 638
I+ E NE + F+I +I L+ N S+ AILYR + F+ A +I
Sbjct: 318 ILCELENEREEAEFVIQEIINLKERENR-----SFRDFAILYRTNAQSRAFEEALMRVRI 372
Query: 639 PFNIHG-VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKI 697
P+ + G + FY +K ++ IIA LR + DD ++R+ + ++ I+ ++
Sbjct: 373 PYKVVGALRFYDRKEIKDIIAYLRILVNPYDDISFKRIIN---VPKRGIGAATIEALEAT 429
Query: 698 STIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVA 757
+ + S A I AK+S K S L LE+I K + ++S VI
Sbjct: 430 ALEKDTSLFFA---IDNAKVSQRAKNSLLEFKE---FILELIDK--KDTMTVSEVI---- 477
Query: 758 NMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQD 817
KY+LE+ ++ +L E+++ + + ++ +FL+ AA E +D
Sbjct: 478 -----KYILEETGYIE----ELKREESEQ---AEGRIENLNEFLN----AAYEFEESSED 521
Query: 818 KKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
K L+AF+ I+ + + SV L T+H +KGLE+ +VF+ E
Sbjct: 522 KS-----LEAFLSGITLVSDIDLAGEIGE---SVVLMTLHSAKGLEFPVVFMVGMEEGVF 573
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM---MDANWQLLQPSRFLKE 934
P F + YV +TR+++KL++ Y + Q SRF+ E
Sbjct: 574 PSFKSFTDEHELEEERRL-----CYVGITRSKEKLYLTYARRRNLYGKSQYGTYSRFISE 628
Query: 935 IPHHL 939
IP
Sbjct: 629 IPERF 633
>gi|50914312|ref|YP_060284.1| DNA helicase II [Streptococcus pyogenes MGAS10394]
gi|50903386|gb|AAT87101.1| DNA helicase II [Streptococcus pyogenes MGAS10394]
gi|94544108|gb|ABF34156.1| DNA helicase II [Streptococcus pyogenes MGAS10270]
Length = 772
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 203/724 (28%), Positives = 331/724 (45%), Gaps = 114/724 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q +A PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAQA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R ++ K+ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKER--ALALNPATKDTLIATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+L+ I K +L T S + L +E
Sbjct: 121 --KRILKQLNIDPKKWNERSILGT-------------------ISNAKNDLLDEKGYEAQ 159
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D+ +I A + Y LR ALD+ DLI +++L P+V
Sbjct: 160 AADMYS--------------QIVARCYKAYQEELRRSEALDFDDLIMMTLRLFDANPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 AYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + K + L NYRST+ I++AA+ +I +N R + K + T N+ G +++ ++E
Sbjct: 266 EKDYPDAKVVLLEENYRSTKKILQAANDVINNNRNR-RPKKLWTQNADGEQLVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASIC-SYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
+ F+ I SN + ++ A+LYR + + A + IP+ + G
Sbjct: 325 RDEAVFVASTI----SNMSQELGKNFKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTK 380
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIRK 702
FY +K +R +IA L D+ + R+ E K+ V +D + + +
Sbjct: 381 FYSRKEIRDLIAYLTIVANPADNISFERIV-------NEPKRGVGPGTLDKLRQFAYESD 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + AA ++ + + G + + ++ L I +R++ IT +A
Sbjct: 434 QSLLEAASNLLMSPLKG--------KAAQAIMDLANILGQLRQDLD-QMSITDLA----- 479
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
+ LLE+ +D L N L S Q + ++ +FLS + + ++D+ G
Sbjct: 480 EALLEKTGYLDS-----LRLQNTLES--QARIENIEEFLSVTKNFDESSASQEEDETGVD 532
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ + D +T+ + + + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 533 RLGRFLNDLALIADTDDSQAEAAE----VTLMTLHAAKGLEFPVVFLIGMEEGVFPLSR- 587
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
+E +EEERRL YV +TRA + LF M +AN + L +P+RFLKEI
Sbjct: 588 ----ASEDPDELEEERRLAYVGITRAEEVLF----MTNANTRTLFGKSSYNRPTRFLKEI 639
Query: 936 PHHL 939
L
Sbjct: 640 SEEL 643
>gi|421891954|ref|ZP_16322683.1| ATP-dependent DNA helicase UvrD/PcrA [Streptococcus pyogenes
NS88.2]
gi|379982280|emb|CCG26405.1| ATP-dependent DNA helicase UvrD/PcrA [Streptococcus pyogenes
NS88.2]
Length = 772
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 203/724 (28%), Positives = 331/724 (45%), Gaps = 114/724 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q +A PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAQA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R ++ K+ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKER--ALALNPATKDTLIATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+L+ I K +L T S + L +E
Sbjct: 121 --KRILKQLNIDPKKWNERSILGT-------------------ISNAKNDLLDEKGYEAQ 159
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D+ +I A + Y LR ALD+ DLI +++L P+V
Sbjct: 160 AADMYS--------------QIVARCYKAYQEELRRSEALDFDDLIMMTLRLFDANPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 AYYQQRYQYIHVDEYQDTNHAQYQLIKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + K + L NYRST+ I++AA+ +I +N R + K + T N+ G +++ ++E
Sbjct: 266 EKDYPDAKVVLLEENYRSTKKILQAANDVINNNRNR-RPKKLWTQNADGEQLVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASIC-SYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
+ F+ I SN + ++ A+LYR + + A + IP+ + G
Sbjct: 325 RDEAVFVASTI----SNMSQELGKNFKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTK 380
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIRK 702
FY +K +R +IA L D+ + R+ E K+ V +D + + +
Sbjct: 381 FYSRKEIRDLIAYLTIVANPADNISFERIV-------NEPKRGVGPGTLDKLRQFAYESD 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + AA ++ + + G + + ++ L I +R++ IT +A
Sbjct: 434 QSLLEAASNLLMSPLKG--------KAAQAIMDLANILGQLRQDLD-QMSITDLA----- 479
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
+ LLE+ +D L N L S Q + ++ +FLS + + ++D+ G
Sbjct: 480 EALLEKTGYLDS-----LRLQNTLES--QARIENIEEFLSVTKNFDESSASQEEDETGVD 532
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ + D +T+ + + + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 533 RLGRFLNDLALIADTDDSQAEAAE----VTLMTLHAAKGLEFPVVFLIGMEEGVFPLSR- 587
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
+E +EEERRL YV +TRA + LF M +AN + L +P+RFLKEI
Sbjct: 588 ----ASEDPDELEEERRLAYVGITRAEEVLF----MTNANIRTLFGKSSYNRPTRFLKEI 639
Query: 936 PHHL 939
L
Sbjct: 640 SEEL 643
>gi|392948234|ref|ZP_10313845.1| ATP-dependent DNA helicase UvrD/PcrA [Lactobacillus pentosus KCA1]
gi|392436440|gb|EIW14353.1| ATP-dependent DNA helicase UvrD/PcrA [Lactobacillus pentosus KCA1]
Length = 755
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 205/726 (28%), Positives = 334/726 (46%), Gaps = 116/726 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +ND+Q EA D PLLI+AG GSGK G++P N+LA+TFT
Sbjct: 7 LAGMNDKQQEAVL-DTEGPLLIMAGAGSGKTRVLTHRVAYLIEERGVNPWNVLAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+G ++G+ +A+E+ +STFH+ +++ R E++ F I G +QR
Sbjct: 66 AAREMRERVGKLLGE-SAQEVWVSTFHALCVRILRRDIEQIGYNRAFTIAGTSEQR---- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+VKRI T+ +++ F S K +
Sbjct: 121 -----------TLVKRILTEQ---------------NIDSKKFDPRSILSAISNAKNDLQ 154
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
++ K S +P E + A + Y L + A+D+ DLI +++L PE
Sbjct: 155 TPEMYKESAASPFE------SVVADVYLQYQRELAADQAVDFDDLIMLTIRLFKQNPETL 208
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDSF 528
YQ+ + I VDE+QDT+ QY+L+ +LA + + +VGD DQSI+ + GA++ F
Sbjct: 209 AWYQNKFHYIHVDEYQDTNNAQYTLVNLLADKYKNLCVVGDADQSIYGWRGANMENILDF 268
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + L +NYRST+ I+ AA+++I +N R + K + T+N G KI +E
Sbjct: 269 EKDYPQADTVMLEQNYRSTKTILSAANAVINNNSTR-RPKKLWTENEPGDKISYYRGQSE 327
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+I KI E A +YG AILYR +V + + + IP+ + G F
Sbjct: 328 SDETHFVIAKIQESMQ---ADNLNYGDFAILYRTNAQSRVMEESLVKANIPYTMVGGNKF 384
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVF---KAFLLLEKEEKKRVI------DHIDKIS 698
Y +K +R +++ L + D + RV K + EK R+ ++ S
Sbjct: 385 YDRKEIRDVLSYLTLVVNDQDSMNFERVVNEPKRGIGQTSVEKLRLFADEAGYSMLEAAS 444
Query: 699 TIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
+ + ISA AK + T ++L R+ L ++ +++ R + A+ + A
Sbjct: 445 NVDMANGISARAKGALAKFAATM--NELRAMREYLSVTDLTQEILNRTGYMKALKDAKAT 502
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST--KFTAAKEEGNVDQ 816
LE +A ++ ++ +FLS +F + + + D
Sbjct: 503 KS-----LEAQARIE----------------------NIEEFLSVTKQFDDSYQPEDEDS 535
Query: 817 DKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
DK F+D++++ + +VTL T+H +KGLE+ +VF+ E
Sbjct: 536 DK---------FVDFLADLALVSDVDNVEEEPQAVTLMTLHAAKGLEFPVVFLIGLEEGI 586
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLK 933
PL +EEERRL YV +TRA KKL++ M+ Q SRF+K
Sbjct: 587 FPLSR-----AMMDEDELEEERRLAYVGITRAEKKLYLTNAYSRMLYGRRQNNPASRFVK 641
Query: 934 EIPHHL 939
EI L
Sbjct: 642 EIEPEL 647
>gi|209559530|ref|YP_002286002.1| ATP-dependent DNA helicase [Streptococcus pyogenes NZ131]
gi|209540731|gb|ACI61307.1| Putative ATP-dependent DNA helicase [Streptococcus pyogenes NZ131]
Length = 772
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 203/724 (28%), Positives = 331/724 (45%), Gaps = 114/724 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q +A PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAQA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R ++ K+ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKER--ALALNPATKDTLIATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+L+ I K +L T S + L +E
Sbjct: 121 --KRILKQLNIDPKKWNERSILGT-------------------ISNAKNDLLDEKGYEAQ 159
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D+ +I A + Y LR ALD+ DLI +++L P+V
Sbjct: 160 AADMYS--------------QIVARCYKAYQEELRRSEALDFDDLIMMTLRLFDANPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 AYYQQRYQYIHVDEYQDTNHAQYQLIKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + K + L NYRST+ I++AA+ +I +N R + K + T N+ G +++ ++E
Sbjct: 266 EKDYPDAKVVLLEENYRSTKKILQAANDVINNNRNR-RPKKLWTQNADGEQLVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASIC-SYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
+ F+ I SN + ++ A+LYR + + A + IP+ + G
Sbjct: 325 RDEAVFVASTI----SNMSQELGKNFKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTK 380
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIRK 702
FY +K +R +IA L D+ + R+ E K+ V +D + + +
Sbjct: 381 FYSRKEIRDLIAYLTIVANPADNISFERIV-------NEPKRGVGPGTLDKLRQFAYESD 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + AA ++ + + G + + ++ L I +R++ IT +A
Sbjct: 434 QSLLEAASNLLMSPLKG--------KAAQAIMDLANILGQLRQDLD-QMSITDLA----- 479
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
+ LLE+ +D L N L S Q + ++ +FLS + + ++D+ G
Sbjct: 480 EALLEKTGYLDS-----LRLQNTLES--QARIENIEEFLSVTKNFDESSASQEEDETGVD 532
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ + D +T+ + + + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 533 RLGRFLNDLALIADTDDSQAEAAE----VTLMTLHAAKGLEFPVVFLIGMEEGVFPLSR- 587
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
+E +EEERRL YV +TRA + LF M +AN + L +P+RFLKEI
Sbjct: 588 ----ASEDPDELEEERRLAYVGITRAEEVLF----MTNANTRTLFGKSSYNRPTRFLKEI 639
Query: 936 PHHL 939
L
Sbjct: 640 SEEL 643
>gi|395454024|dbj|BAM30363.1| DNA helicase II [Streptococcus pyogenes M1 476]
Length = 783
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 203/724 (28%), Positives = 331/724 (45%), Gaps = 114/724 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q +A PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAQA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R ++ K+ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKER--ALALNPATKDTLIATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+L+ I K +L T S + L +E
Sbjct: 121 --KRILKQLNIDPKKWNERSILGT-------------------ISNAKNDLLDEKGYEAQ 159
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D+ +I A + Y LR ALD+ DLI +++L P+V
Sbjct: 160 AADMYS--------------QIVARCYKAYQEELRRSEALDFDDLIMMTLRLFDANPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 AYYQQRYQYIHVDEYQDTNHAQYQLIKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + K + L NYRST+ I++AA+ +I +N R + K + T N+ G +++ ++E
Sbjct: 266 EKDYPDAKVVLLEENYRSTKKILQAANDVINNNRNR-RPKKLWTQNADGEQLVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASIC-SYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
+ F+ I SN + ++ A+LYR + + A + IP+ + G
Sbjct: 325 RDEAVFVASTI----SNMSQELGKNFKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTK 380
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIRK 702
FY +K +R +IA L D+ + R+ E K+ V +D + + +
Sbjct: 381 FYSRKEIRDLIAYLTIVANPADNISFERIV-------NEPKRGVGPGTLDKLRQFAYESD 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + AA ++ + + G + + ++ L I +R++ IT +A
Sbjct: 434 QSLLEAASNLLMSPLKG--------KAAQAIMDLANILGQLRQDLD-QMSITDLA----- 479
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
+ LLE+ +D L N L S Q + ++ +FLS + + ++D+ G
Sbjct: 480 EALLEKTGYLDS-----LRLQNTLES--QARIENIEEFLSVTKNFDESSASQEEDETGVD 532
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ + D +T+ + + + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 533 RLGRFLNDLALIADTDDSQAEAAE----VTLMTLHAAKGLEFPVVFLIGMEEGVFPLSR- 587
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
+E +EEERRL YV +TRA + LF M +AN + L +P+RFLKEI
Sbjct: 588 ----ASEDPDELEEERRLAYVGITRAEEVLF----MTNANTRTLFGKSSYNRPTRFLKEI 639
Query: 936 PHHL 939
L
Sbjct: 640 SEEL 643
>gi|322389226|ref|ZP_08062787.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis ATCC
903]
gi|321144131|gb|EFX39548.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis ATCC
903]
Length = 767
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 214/742 (28%), Positives = 338/742 (45%), Gaps = 123/742 (16%)
Query: 237 MPDEY--SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPS 279
M +EY + L +ND+Q EA PLLI+AG GSGK ++P
Sbjct: 1 MNEEYEMNPLLNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPW 59
Query: 280 NILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIY 339
NILA+TFT AA EM++R + ++ I+TFHS +++ R A+ + F I
Sbjct: 60 NILAITFTNKAAREMKERAYQL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIV 117
Query: 340 GHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFK 399
G+QR + R+L++ + K +L T + NA
Sbjct: 118 DPGEQRTLM---KRILKSLNLDPKKWNERTILGT------------ISNA---------- 152
Query: 400 LCQYNKFERDGMD-VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCS 458
+ D +D VA A A+ + +I A E Y LR A+D+ DLI +
Sbjct: 153 -------KNDLIDEVAYA-----AQAGDMYTQIVAKCYEAYQKELRQSEAVDFDDLIMLT 200
Query: 459 VKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSF 517
++L P+V YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ +
Sbjct: 201 LRLFDQHPDVLTYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGW 260
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GAD+ F KD+ + K + L NYRST+ I++AA+ +I++N R + KN+ T N G
Sbjct: 261 RGADMQNILDFEKDYPDAKVVLLEENYRSTKTILQAANDVIKNNRHR-RPKNLWTQNEDG 319
Query: 578 SKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERK 637
+I+ ++E + F+ I E + + A+LYR + + A +
Sbjct: 320 EEIVYYRANDEQDEAVFVAKTIEELSREAG---YKHRDFAVLYRTNAQSRTIEEALLKSN 376
Query: 638 IPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VI 691
IP+ + G FY +K +R +IA L D+ + R+ E KR +
Sbjct: 377 IPYTMVGGTKFYSRKEIRDVIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTV 428
Query: 692 DHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISA 751
D I + +++ S + A+ +I + I G ++ +L E + +L E
Sbjct: 429 DKIRDFAQMQESSLLDASANIMLSGIKGKAAQAIWDFANLILDLRERLDQLTITE----- 483
Query: 752 VITSVANMVPQKYLLEQRAVVDFDG--GKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAK 809
L+E+ V+D G L N+ N L S Q + ++ +FLS T
Sbjct: 484 -------------LVEE--VLDKTGYMTALTNQGN-LES--QARIENIQEFLSV--TKNF 523
Query: 810 EEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFV 869
+E D + + L F++ ++ Q + VTL T+H +KGLE+ +VF+
Sbjct: 524 DENGETVDDESGVETLSRFLNDLALIADTDDGAQE---TSEVTLMTLHAAKGLEFPVVFL 580
Query: 870 AKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL--- 926
E PL E +EEERRL YV +TRA K LF + +AN +LL
Sbjct: 581 IGMEENVFPLSR-----AAEDPDELEEERRLAYVGITRAEKVLF----LTNANSRLLFGR 631
Query: 927 ----QPSRFLKEIPHHLREVQA 944
+P+RF+ EI L Q
Sbjct: 632 TSYNRPTRFINEISSDLLSYQG 653
>gi|389811662|ref|ZP_10206201.1| DNA-dependent helicase II [Rhodanobacter thiooxydans LCS2]
gi|388440169|gb|EIL96575.1| DNA-dependent helicase II [Rhodanobacter thiooxydans LCS2]
Length = 734
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 198/729 (27%), Positives = 329/729 (45%), Gaps = 111/729 (15%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTF 286
S + LN Q EA C L++AG GSGK + P ILA+TF
Sbjct: 4 SYLIDPLNAAQREAVCAPPGH-YLVLAGAGSGKTRVLTHRIGWLTQAERVPPWAILAVTF 62
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR 346
T AA EMR R+ S++ T + LT+ TFH + +L R H +
Sbjct: 63 TNKAAGEMRARLESLIPGGT-QGLTVGTFHGIAHRLLRRHWREA---------------- 105
Query: 347 AIIEAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNK 405
+ EA ++L+ ++++ +VKR+ + D F +AS Q N+
Sbjct: 106 GLPEAFQILDADDQLRLVKRVVAGLGLDDAKFPPRQAS-----------------WQINQ 148
Query: 406 FERDGMDVAKASGKTPAEFRKIGDEIGAA---ILENYNGILRSCNALDYHDLISCSVKLL 462
+ K GK P + I + Y R +D+ +L+ + +L
Sbjct: 149 W--------KDEGKRPDAIEHRDHPVTQTFVRIYQAYEDACRRAGLVDFAELLLRAHELW 200
Query: 463 STFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGAD 521
P V + YQ W+ +++DEFQDT+ +QY+ +++LA + ++ VGDDDQSI+ + GA
Sbjct: 201 LKNPAVLEHYQQRWRHLLIDEFQDTNTLQYAWIRVLAGATGKVFAVGDDDQSIYGWRGAR 260
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII 581
+ F +DF + I+L +NYRST I++AA+S+IQ N R K + T G +I
Sbjct: 261 VENMAQFLRDFPGARTIKLEQNYRSTSTILKAANSVIQRNGSRLG-KQLWTAGDDGERIA 319
Query: 582 IKECHNEDAQCAFIIDKILEHA-SNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
+ +NE + F+I++I E+ G A C AILYR + F+ +R I +
Sbjct: 320 LYAAYNEQDEARFVIERIREYIDEQGSAKDC-----AILYRSNAQSRNFEEQLAQRNIKY 374
Query: 641 NIHGVA-FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIST 699
++G F+ + V+ +A LR T DD + R + +R +D + + +
Sbjct: 375 RVYGGQRFFERAEVKDALAYLRLTANRHDDAAFERAVNT---PPRGIGERTLDALRRRAR 431
Query: 700 IRKCSFISAACDIF--GAKISGTFKRSQLTQGRKVLLTLEMISKLVRR-EPSISAVITSV 756
S AA G++++G K + V L MI + +P S
Sbjct: 432 GENTSMWEAALSELSGGSELAGRAKNA-------VKAFLGMIDAMAHAFQPPTSDGEKDA 484
Query: 757 ANMVPQ-KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDF--LSTKFTAAKEEGN 813
+ Q + + + DF + D R + + ++ + ++++F E
Sbjct: 485 LTLAEQIDHAITHTGLRDF-------YEKDSRGNAESRVENLDELVNVASRFERTAE--- 534
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
D ++ L AF+ + + E+ Q ++ V L T+H +KGLE+ +VF+
Sbjct: 535 ---DIDAGLSELSAFLSHATLEAGEN---QGEAWDDCVQLMTLHSAKGLEFPLVFLVGME 588
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSR 930
E P +V+++G +EEERRL YV +TRAR+KL + + M L +PSR
Sbjct: 589 EGLFPSQR----SVDDEG-RLEEERRLAYVGITRAREKLVVTHAESRRMHGAEMLARPSR 643
Query: 931 FLKEIPHHL 939
FL E+P L
Sbjct: 644 FLGEMPAEL 652
>gi|313678484|ref|YP_004056224.1| ATP-dependent DNA helicase PcrA [Mycoplasma bovis PG45]
gi|312950464|gb|ADR25059.1| ATP-dependent DNA helicase PcrA [Mycoplasma bovis PG45]
Length = 734
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 215/736 (29%), Positives = 345/736 (46%), Gaps = 139/736 (18%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTF 286
+K + LN++Q EA PL I+AG GSGK GISP++ILA+TF
Sbjct: 12 AKIFEGLNEEQTEALYY-FDGPLRIIAGAGSGKTRVLTRKIAYLINVLGISPNHILAVTF 70
Query: 287 TTAAASEMRDRI----GSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHG 342
T AA+EM +R+ + K TA+ ISTFHS ++ R A + ++F I
Sbjct: 71 TNKAAAEMSERVKQYTNTKFNKGTAE---ISTFHSLCARILREEAFHINLKNDFQIIDDN 127
Query: 343 QQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQ 402
+++ + + + D++ TD +F N + FS KL
Sbjct: 128 DKKKILKDLYK-------------EHDLIPTDSNFK---------NLIRLFSWLKNKL-- 163
Query: 403 YNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLL 462
++ D + + +EF G+ + I YN LR+ +LD+ DL+ +L
Sbjct: 164 ---YDSDEEIIHFINSNLESEFYGDGESV-VKIYNLYNNQLRTLQSLDFDDLLIKVNELF 219
Query: 463 STFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-RITIVGDDDQSIFSFNGAD 521
E+ +++ + I+VDEFQDTSA+QY +++ L+S ++TIVGD DQ+I+ + GAD
Sbjct: 220 YKNTEIVKKWALKYSYILVDEFQDTSAIQYEIIKYLSSQKAQLTIVGDPDQTIYRWRGAD 279
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII 581
++ SF KDF N K I L++NYRST+ I+EAA++LI++N R KN+ TDN G++I
Sbjct: 280 VNLILSFEKDFENTKTIILSKNYRSTKKILEAANNLIKYNHNRFN-KNLVTDNYDGAEIE 338
Query: 582 IKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN 641
+ +A+ +++ KI ++ +IAI YR + F+ KI +
Sbjct: 339 YIHAFSPEAEVRWVVQKI----NDLKKQKIQLKNIAIFYRSNSYSRNFEEQLMNEKINYK 394
Query: 642 IH-GVAFYRKKVVRAIIAMLRTTLPGCD-------DGPYRRVFKAFL---LLEKEEK--- 687
I G FY++K ++ +A LR G D + P R+V +A L + EK
Sbjct: 395 IFGGEKFYQRKEIKDALAFLRVIYDGNDLQLKRIINVPPRKVGEASLNKIINFANEKNLS 454
Query: 688 --KRVIDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRR 745
K ++ H + ++ +I+ ++ L QG K+ + LE K +
Sbjct: 455 LYKTLVTHYKNLPVSKEV-----IINIYALLNCINKYKAALLQGNKIHVVLESFLKEIGF 509
Query: 746 EPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKF 805
IS D G K E+N +R++L+ +
Sbjct: 510 LKYIS----------------------DDVGLKGTGEEN-IRALLEGI------------ 534
Query: 806 TAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWD 865
+ + KKG LK + +YIS ++ + V+L T+H +KGLE+D
Sbjct: 535 ----KSWEITNPKKG----LKEYFEYISLISAS---DSTDESMSYVSLMTVHAAKGLEFD 583
Query: 866 IVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQL 925
VF+ E P N + ++EEERRL YVA+TRA++KLF+ D+ L
Sbjct: 584 NVFLVGMCENIFP-----NYRAYKVPEAMEEERRLAYVAITRAKEKLFV----SDSRGLL 634
Query: 926 L------QPSRFLKEI 935
L +PSRFLKE+
Sbjct: 635 LYSQTEKKPSRFLKEM 650
>gi|336422896|ref|ZP_08603036.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
5_1_57FAA]
gi|336007026|gb|EGN37055.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
5_1_57FAA]
Length = 743
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 149/451 (33%), Positives = 234/451 (51%), Gaps = 68/451 (15%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAA 291
+LN+QQ EA PLLI+AG GSGK G++P NILA+TFT AA
Sbjct: 6 TLNEQQKEAVL-HTEGPLLILAGAGSGKTRVLTHRIAYLIEEQGVNPWNILAITFTNKAA 64
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEA 351
EMR+R+ +VG A+ + +STFHS +++ R H + L + F IY Q+ + +
Sbjct: 65 GEMRERVDKLVGFG-AESIWVSTFHSTCVRILRRHIDLLGYDNNFTIYDSDDQKTLMKDV 123
Query: 352 VRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
+LL+ + + +R +L+T H
Sbjct: 124 CKLLQIDTKIFKERA---LLSTISH----------------------------------- 145
Query: 412 DVAKASGKTPAEFR-----KIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
AK TP EFR + A + E Y LR+ NALD+ DL+ +V+L T
Sbjct: 146 --AKDELITPEEFRIRAEGDFSQKKIAEVYEEYEKQLRANNALDFDDLLVKTVQLFQTQA 203
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGF 525
++ + YQ+ ++ I+VDE+QDT+ +Q+ L+++LAS R + +VGDDDQSI+ F GA+I
Sbjct: 204 DMLEYYQERFRYIMVDEYQDTNTVQFELIRLLASKYRNLCVVGDDDQSIYKFRGANIKNI 263
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
+F F + K I+L +NYRST I+ AA+++I++N R + K + TDN G K+ ++
Sbjct: 264 LNFEHVFEDAKVIKLEQNYRSTSNILNAANAVIRNNRGR-KDKTLWTDNGDGEKLEFRQF 322
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HG 644
+ +I+ I EH G C+Y AILYR ++F+ F IP+ I G
Sbjct: 323 DTAYDEAEYIVGDIREHVDRGE---CTYNDNAILYRTNAQSRIFEEKFVNANIPYKIVGG 379
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRV 675
+ FY ++ ++ +++ L+T G DD RR+
Sbjct: 380 INFYARREIKDLLSYLKTVDNGQDDLAVRRI 410
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 846 DNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAM 905
+N + V L T+H +KGLE+ V++A + P + + VEEERRL YV +
Sbjct: 549 ENSDYVVLMTLHSAKGLEFPHVYLAGLEDGIFP---SYMTITADDPEEVEEERRLCYVGI 605
Query: 906 TRARKKLFILYV---MMDANWQLLQPSRFLKEIPHHL 939
TRA K L + M+ Q + SRFLKEIP L
Sbjct: 606 TRAEKALTLTCARRRMIRGETQYNKMSRFLKEIPMEL 642
>gi|253680774|ref|ZP_04861577.1| helicase, UvrD/Rep family [Clostridium botulinum D str. 1873]
gi|253562623|gb|EES92069.1| helicase, UvrD/Rep family [Clostridium botulinum D str. 1873]
Length = 761
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 210/736 (28%), Positives = 354/736 (48%), Gaps = 131/736 (17%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q +AA + P+L++AG GSGK GI NILA+TFT AA
Sbjct: 7 LNKEQYKAATA-IEGPVLVLAGAGSGKTRVLTYRIAHMIEDLGIPQYNILAITFTNKAAG 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM+DRI +V + + +STFHS +++ R +KL + F IY Q+ + + +
Sbjct: 66 EMKDRIKKLVSNSI-DSMWVSTFHSCCVRILRREIDKLGYSKNFAIYDSSDQKNLVKQCM 124
Query: 353 RLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
+ L N+K + K I + + G ++D +
Sbjct: 125 KELNINDKDINEKEIISKI----GK------------------------------QKDNL 150
Query: 412 DVAKASGKT-PAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
A+ K+ +FRK ++I L Y L++ NALD+ DLI +V+L P++ +
Sbjct: 151 ITAEEYKKSNEKDFRK--NKIADVYLL-YQKKLKNSNALDFDDLIFKTVELFKKNPDILE 207
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFR 529
YQ+ +K I+VDE+QDT+ QY L+++LAS H I +VGDDDQ I+ + GADI F
Sbjct: 208 FYQNKFKYIMVDEYQDTNKTQYQLVKMLASAHRNIFVVGDDDQCIYQWRGADIKNILDFE 267
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
D+ K I+L NYRS I+ AA+++I+HN +R K ++T NS G KI I +++
Sbjct: 268 GDYPEAKVIKLEENYRSKANILNAANTVIKHNSQRKN-KVLRTQNSDGEKIKIYRAYSDI 326
Query: 590 AQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
+ F I +++E + S+ AILYR ++F+ F +R IP+ I G+
Sbjct: 327 DEGIFTANEIKRLIEKENR------SFKDFAILYRTNAQSRMFEDVFMKRDIPYRIIGGL 380
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH--IDKI----ST 699
FY +K ++ I A L+ DD +R+ KR I I KI +
Sbjct: 381 KFYDRKEIKDITAYLKFINNLQDDISLKRIINV--------PKRAIGAATISKIQEFANY 432
Query: 700 IRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANM 759
+ +C + S D I G KR+ + + +I+ R + + SV+N+
Sbjct: 433 MDECMY-SVLLD--AENIPGLSKRTISSINK----FTSLINGFTRTKDKV-----SVSNL 480
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
+ + +LE + K L + N++ + + + ++ + +S AA E N +DK
Sbjct: 481 IQE--ILESTGYM-----KELKDSNEIEDISR--IENIKELVS----AAVEFENTSEDKS 527
Query: 820 GCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
L AF++ I+ + +++ ++ ++ + T+H +KGLE+ +VF+ P
Sbjct: 528 -----LSAFLEKITLVSDVDNY----DEDTDTTVMMTLHSAKGLEFPVVFMVGMENGIFP 578
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL------QPSRFL 932
E + +EE RRL YV +TRA+++ LY+ +N ++ S F+
Sbjct: 579 GAQSL-----ENFSEMEESRRLCYVGITRAKEQ---LYMTSASNRKVFGRTVAYSESSFI 630
Query: 933 KEIPHHLREVQAEQSV 948
EI L+E+ E+ +
Sbjct: 631 NEISPDLKELVKEERI 646
>gi|415709469|ref|ZP_11463094.1| UvrD/REP helicase [Gardnerella vaginalis 6420B]
gi|388056141|gb|EIK79017.1| UvrD/REP helicase [Gardnerella vaginalis 6420B]
Length = 988
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 211/741 (28%), Positives = 336/741 (45%), Gaps = 108/741 (14%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFT 287
K L LN QQ +A D LLI AG GSGK G PS ILA+TFT
Sbjct: 112 KLLDGLNPQQSQAVQYD-GPALLIGAGAGSGKTRVLTRRIAWILSQKGAWPSQILAITFT 170
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA+EMR+R+ +++G + A + +STFHS +++ R + + S F IY R
Sbjct: 171 NKAAAEMRERLSNLIG-SEANTMWVSTFHSACVKILRRSGQYIGLKSGFSIYDTSDCERL 229
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
V+++ E + +KR + + G + SL L + +K
Sbjct: 230 ----VKIIATELNVDIKRFTPRSIL--GKISDCKNSLITWREQLDMYANDYKPGVA---- 279
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
G +A A G + A + A I Y L NA+D+ DLI +V+L+ PE
Sbjct: 280 --GQQIAHA-GNSEAVY--------ATIYAEYQHRLSQANAVDFDDLIMRTVQLMREVPE 328
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-----------------------RI 504
Q Y+ ++ I+VDE+QDT+ QY L++ LA + I
Sbjct: 329 AAQYYRHKFRYILVDEYQDTNHAQYELIRELAGVDVKQNNAYAKQNNANTSQQNSTPASI 388
Query: 505 TIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKR 564
T+VGD DQSI++F GADI F KDF N I L +NYRST+ I++AA+++I HN R
Sbjct: 389 TVVGDSDQSIYAFRGADIRNIQDFEKDFPNATTIMLEQNYRSTQTILDAANAVISHNQGR 448
Query: 565 CQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQV 624
+ K + T G+ I + + A++ +I A G + Y +AI+YR
Sbjct: 449 -KPKKLWTALGKGAPITGYAADSAQQEAAWVAQEIARLA--GEEGVA-YSDMAIMYRANA 504
Query: 625 SGKVFQTAFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLE 683
+ + A + +P+ + G FY ++ V+ +A L++ DD RR+ + +
Sbjct: 505 QSRSLEDALVKAGLPYQLVGGTKFYERREVKDALAYLQSMANPDDDVNMRRILN---VPK 561
Query: 684 KEEKKRVIDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLV 743
+ R + + + SF A + + T ++L + R+++ L I+ +
Sbjct: 562 RGLGARAEALLTLYAQTQGVSFWQALEHLESIEGMPTRTATKLKEFRELMHNL--ITCMQ 619
Query: 744 RREPSISAVITSVANMVPQKYLLE--QRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFL 801
+ S VI S+ N LLE QR+ D ++ D S LQ + A+
Sbjct: 620 NDDSKPSKVIDSILN---DSGLLEDLQRSEDPQDAARV-----DNLSQLQSVAAEY---- 667
Query: 802 STKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKG 861
E+ D G + D ++ + D VTL T+H +KG
Sbjct: 668 --------EQNTPDASVAGFLETTALVAD------SDQLPDENEDT-GKVTLMTLHTAKG 712
Query: 862 LEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDA 921
LE+ +VF+ + P + A+ + G + EERRL YV +TRA+++L++ + A
Sbjct: 713 LEYPVVFLTGMEQGTFP----HSRALEDDG-ELCEERRLAYVGITRAKQRLYVTRAAVRA 767
Query: 922 NW---QLLQPSRFLKEIPHHL 939
W Q + PS+FL EIP +L
Sbjct: 768 QWGQAQDMLPSQFLDEIPDNL 788
>gi|307709461|ref|ZP_07645918.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK564]
gi|307619775|gb|EFN98894.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK564]
Length = 763
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 212/729 (29%), Positives = 337/729 (46%), Gaps = 115/729 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R+ L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERSILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ ++E
Sbjct: 266 EKDYPQAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+ I E G + + A+LYR + + A + IP+ + G F
Sbjct: 325 LDEAVFVAKTIDEL---GRSQNFLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRK 702
Y +K +R IIA L D+ + R+ E KR ++ I + ++
Sbjct: 382 YSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANVQD 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ +I + I G +S +L E + +L SI+ ++ V
Sbjct: 434 MSMLDASANIMLSGIKGKAAQSIWDFANMILDLREQLDQL-----SITELVEEV------ 482
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
LE+ +D +LN L S + + ++ +FLS + +V +++ G +
Sbjct: 483 ---LEKTGYID-----ILNVQATLESKAR--VENIEEFLSVT-KNFDDTSDVPEEETG-L 530
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 531 DKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGMEENVFPLSR- 586
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+ EI
Sbjct: 587 ----AAEDQDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFINEI 638
Query: 936 PHHLREVQA 944
L E Q
Sbjct: 639 SSDLLEYQG 647
>gi|167760475|ref|ZP_02432602.1| hypothetical protein CLOSCI_02849 [Clostridium scindens ATCC 35704]
gi|167661841|gb|EDS05971.1| ATP-dependent DNA helicase PcrA [Clostridium scindens ATCC 35704]
Length = 743
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 149/451 (33%), Positives = 234/451 (51%), Gaps = 68/451 (15%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAA 291
+LN+QQ EA PLLI+AG GSGK G++P NILA+TFT AA
Sbjct: 6 TLNEQQKEAVL-HTEGPLLILAGAGSGKTRVLTHRIAYLIEEQGVNPWNILAITFTNKAA 64
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEA 351
EMR+R+ +VG A+ + +STFHS +++ R H + L + F IY Q+ + +
Sbjct: 65 GEMRERVDKLVGFG-AESIWVSTFHSTCVRILRRHIDLLGYDNNFTIYDSDDQKTLMKDV 123
Query: 352 VRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
+LL+ + + +R +L+T H
Sbjct: 124 CKLLQIDTKIFKERA---LLSTISH----------------------------------- 145
Query: 412 DVAKASGKTPAEFR-----KIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
AK TP EFR + A + E Y LR+ NALD+ DL+ +V+L T
Sbjct: 146 --AKDELITPEEFRIRAEGDFSQKKIAEVYEEYEKQLRANNALDFDDLLVKTVQLFQTQA 203
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGF 525
++ + YQ+ ++ I+VDE+QDT+ +Q+ L+++LAS R + +VGDDDQSI+ F GA+I
Sbjct: 204 DMLEYYQERFRYIMVDEYQDTNTVQFELIRLLASKYRNLCVVGDDDQSIYKFRGANIKNI 263
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
+F F + K I+L +NYRST I+ AA+++I++N R + K + TDN G K+ ++
Sbjct: 264 LNFEHVFEDAKVIKLEQNYRSTSNILNAANAVIRNNRGR-KDKTLWTDNGDGEKLEFRQF 322
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HG 644
+ +I+ I EH G C+Y AILYR ++F+ F IP+ I G
Sbjct: 323 DTAYDEAEYIVGDIREHVDRGE---CTYNDNAILYRTNAQSRIFEEKFVNANIPYKIVGG 379
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRV 675
+ FY ++ ++ +++ L+T G DD RR+
Sbjct: 380 INFYARREIKDLLSYLKTVDNGQDDLAVRRI 410
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 846 DNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAM 905
+N + V L T+H +KGLE+ V++A + P + + VEEERRL YV +
Sbjct: 549 ENSDYVVLMTLHSAKGLEFPHVYLAGLEDGIFP---SYMTITADDPEEVEEERRLCYVGI 605
Query: 906 TRARKKLFILYV---MMDANWQLLQPSRFLKEIPHHL 939
TRA K L + M+ Q + SRFLKEIP L
Sbjct: 606 TRAEKALTLTCARSRMIRGETQYNKMSRFLKEIPMEL 642
>gi|366089474|ref|ZP_09455947.1| ATP-dependent DNA helicase [Lactobacillus acidipiscis KCTC 13900]
Length = 742
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 202/741 (27%), Positives = 340/741 (45%), Gaps = 136/741 (18%)
Query: 245 LQSLNDQQLEAA-CGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTT 288
L +ND+Q +A C + PLLI+AG GSGK + P ++LA+TFT
Sbjct: 7 LDKMNDKQAQAVRCTE--GPLLIMAGAGSGKTRVLTHRVAYLIQEKKVLPWHVLAITFTN 64
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA EMR+R+ ++G+A ++ +STFH+ +++ R AEK+ F I +QR +
Sbjct: 65 KAAREMRERVDKLLGEA-GSDIWVSTFHALCVRILRREAEKIGFNRSFTIASPSEQRTLM 123
Query: 349 IEAVRLL-----ENEKILVVKRIST---DMLTTDGHFGYMRASLFMMNAMLFFSMSSFKL 400
+ L + +V+ IS D+LT D +
Sbjct: 124 KHILADLNVDTKRYDPRMVLSNISNAKNDLLTVDDY------------------------ 159
Query: 401 CQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVK 460
K + ++P E +I A E Y LR +A+D+ DLI +++
Sbjct: 160 --------------KKNAESPVE------QITAQAYEKYQEELRKDSAMDFDDLIMQTIE 199
Query: 461 LLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNG 519
L + E + YQ ++ I VDE+QDT+ QY L+ +LA +R + +VGD DQSI+ + G
Sbjct: 200 LFTKDRETLEYYQRKFQYIHVDEYQDTNEAQYRLVGMLAEGSRNLCVVGDADQSIYGWRG 259
Query: 520 ADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSK 579
A++ +F KD+ + ++L +NYRST+ I++AA+S+I++NV R ++K + T+N G K
Sbjct: 260 ANMENIMNFEKDYPDATVVKLEQNYRSTKTILDAANSVIKNNVNR-KVKTLWTENKAGDK 318
Query: 580 IIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIP 639
I N + + F++ I + Y AILYR +V + F + IP
Sbjct: 319 IHYYRGMNANDEAYFVVKNIQQKIREEGR---KYNDFAILYRTNAQSRVMEETFVKTNIP 375
Query: 640 FNIHGV-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI-----DH 693
+ I G FY +K + I+A LR D + RV E KR I D
Sbjct: 376 YKIVGAHRFYDRKEILDILAYLRLATNPQDSMSFNRVVN--------EPKRGIGQASLDK 427
Query: 694 IDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVR--REPSISA 751
++ + + S + AA ++ ++G K LE +KL+R E SA
Sbjct: 428 LNDFAAMNGLSMLEAAENVVMTNVTG-----------KAAKQLEKFAKLMRDLHEMEKSA 476
Query: 752 VITSVANMVPQKYLLEQRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLST--KFTAA 808
+T + + A++D G + L + L + + L ++ +FL+ +F ++
Sbjct: 477 TVTELTD-----------AILDRAGYRQALKKTQSLEN--ESRLENLDEFLTVTQQFDSS 523
Query: 809 KEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVF 868
+E +D F+D+++E + + +N VT+ T+H +KGLE+ +VF
Sbjct: 524 WQEDEEHED---------PFVDFLAELSLVSDQDSVDEEQNEVTMMTLHAAKGLEFPVVF 574
Query: 869 VAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQL 925
+ E PL + YV +TRA+++LF+ M+ Q
Sbjct: 575 LIGMEEGIFPLSRAMTDEDELEEERRL-----AYVGITRAQQELFLTNAFSRMLYGRKQN 629
Query: 926 LQPSRFLKEIPHHLREVQAEQ 946
SRF++EI L + + EQ
Sbjct: 630 NPTSRFIEEIDDDLLQSENEQ 650
>gi|299535245|ref|ZP_07048569.1| ATP-dependent DNA helicase pcrA [Lysinibacillus fusiformis ZC1]
gi|424740339|ref|ZP_18168740.1| ATP-dependent DNA helicase pcrA [Lysinibacillus fusiformis ZB2]
gi|298729366|gb|EFI69917.1| ATP-dependent DNA helicase pcrA [Lysinibacillus fusiformis ZC1]
gi|422946156|gb|EKU40575.1| ATP-dependent DNA helicase pcrA [Lysinibacillus fusiformis ZB2]
Length = 750
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 210/733 (28%), Positives = 328/733 (44%), Gaps = 129/733 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +N +Q E A PLLI+AG GSGK + PS ILA+TFT
Sbjct: 9 LAGMNPEQ-ERAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLVIEKEVYPSKILAITFTNK 67
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMRDRI I+G T + +STFHS +++ R + ++L + F I Q +
Sbjct: 68 AAREMRDRIDGILGNGTGDSMWVSTFHSMCVRILRRNIDQLGISRNFSILDSTDQ----L 123
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++ + E+ + KR RA ++NA+ Y
Sbjct: 124 SVIKNVMKEENIDPKRFEP------------RA---ILNAISAAKNECIAADDY------ 162
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ + K P E + A + + Y LR +LD+ DLI ++ L PEV
Sbjct: 163 ---AGQMNDKNPYE------QTVARVYKGYEKRLRRNQSLDFDDLIMTTITLFKRVPEVL 213
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ+ ++ I VDE+QDT+ QY L+Q+LA I +VGD DQSI+ + GADI SF
Sbjct: 214 EYYQNKFQYIHVDEYQDTNKSQYLLVQLLAKKFKNICVVGDSDQSIYRWRGADIGNILSF 273
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K I L +NYRST+ I++AA+ +IQ+N R K ++T+NS G KI + + +NE
Sbjct: 274 EKDYPTAKVIMLEQNYRSTKRILQAANDVIQNNTTRYP-KELRTENSEGEKIALYKAYNE 332
Query: 589 DAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HG 644
+ F+ I +++E + S+ AILYR +V + + + + I G
Sbjct: 333 QEEAQFVVQTIQQLIEKENR------SFDDFAILYRTNAQSRVMEEVLVKSNMAYQIVGG 386
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCS 704
FY +K ++ ++A LR DD R+ E KR I
Sbjct: 387 TKFYDRKEIKDLLAYLRLIANNDDDLSLARIIN--------EPKRSI------------- 425
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKV------LLTLEMISKLVRREPSISAVITSVAN 758
GA R + Q R + L+ + + K A+I
Sbjct: 426 ---------GATSFEKMARYAIDQDRSIFDAMNDLVFMGLSGKAANSAEQFYAMIKGFTQ 476
Query: 759 MVPQKYL-----LEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
M Q+YL +EQ V+D G + + + N+ + L ++ +FLS T A EE +
Sbjct: 477 M--QEYLSVTEIVEQ--VIDKSGYRAMLQ-NEKTIEAESRLENIEEFLSV--TKAFEERS 529
Query: 814 VDQDKKGCIN--VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAK 871
D+ + L A ID + + + ++ ++ L T+H +KGLE+ +VF+
Sbjct: 530 DDRSLIAFLTDLALIADIDALDKEDA---------SKGNIILMTMHAAKGLEFPVVFIIG 580
Query: 872 ANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM---MDANWQLLQP 928
E P + +EEERRL+YV +TRA ++L++ +
Sbjct: 581 MEENIFPHSRSLDDQ-----DEMEEERRLMYVGVTRAEERLYLTCAQSRTIFGRSSFNNA 635
Query: 929 SRFLKEIPHHLRE 941
SRFL EI + E
Sbjct: 636 SRFLGEISQDITE 648
>gi|404474707|ref|YP_006706138.1| ATP dependent DNA helicase [Brachyspira pilosicoli B2904]
gi|404436196|gb|AFR69390.1| ATP dependent DNA helicase [Brachyspira pilosicoli B2904]
Length = 733
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 153/446 (34%), Positives = 230/446 (51%), Gaps = 64/446 (14%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASE 293
LN++Q + A ++ P+L +AG GSGK GI PSNILA+TFT AA+E
Sbjct: 75 LNEEQ-KKAVEHINGPMLALAGAGSGKTRVITERIAYLIKNGIDPSNILAVTFTNKAANE 133
Query: 294 MRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVR 353
MR+RI S++ K K+L ISTFHSF +++ + +KL F IY R
Sbjct: 134 MRERIASLL-KEKPKQLVISTFHSFCVRVLKLDIDKLGYKKNFSIYSSSDSRT------- 185
Query: 354 LLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDV 413
L+ N +++ + + L D +LF +D
Sbjct: 186 LIRN----ILREVKVNTLNYD-------ENLFAW----------------------YIDR 212
Query: 414 AKASGKTPAEFRKIGD--EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQE 471
K + P E D +I + E Y L+ NA+D++DLI+ ++ L FPEV +
Sbjct: 213 YKNNLMKPNEVVPHDDLEKIAKRVYEVYQNYLKGYNAVDFNDLINLTIDLYINFPEVLDK 272
Query: 472 YQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRK 530
YQ+ +K I+VDE+QDT+ QY L +LAS + I +VGDDDQSI++F GAD+S SF
Sbjct: 273 YQERFKYIMVDEYQDTNLAQYKLTSLLASKYKNIVVVGDDDQSIYAFRGADVSNILSFEN 332
Query: 531 DFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDA 590
++ K I L +NYRST+ I+EAA ++I +N +R + K V N G +I C +E
Sbjct: 333 EYPEAKIITLNKNYRSTKAILEAAHAVISNNTQR-KAKEVVAVNDEGIPPVIMPCEDERD 391
Query: 591 QCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGV-AFYR 649
+ FI + I + A N +Y + AIL+R ++F+ A R R IP+ + G FY
Sbjct: 392 EAQFIAENITQTAINKN---LNYENFAILFRMNSQSRIFEEALRFRGIPYTVVGAFQFYE 448
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRV 675
+K ++ I+A L + D+ RV
Sbjct: 449 RKEIKDILAYLNLFVNPEDEVSLLRV 474
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 850 SVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRAR 909
V L +IH +KGLE+ V++ + +P H + + E +EEERRL YVAMTRA+
Sbjct: 624 GVMLMSIHAAKGLEFPYVYICGMEDGILP--HHKSSSDRE----IEEERRLCYVAMTRAK 677
Query: 910 KKLFILYVMMDANWQL---LQPSRFLKEIPHHLREVQA 944
K L + Y M PS FL+E+ L E A
Sbjct: 678 KHLTLTYCMKRKKQGRDVECTPSIFLEEMRKGLPEDMA 715
>gi|422651204|ref|ZP_16714002.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. actinidiae
str. M302091]
gi|330964285|gb|EGH64545.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 669
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 193/726 (26%), Positives = 327/726 (45%), Gaps = 125/726 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+AMTFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ + LT+STFH+ L + R +L F I+
Sbjct: 60 AAREMKERVGTLLKGGEGRGLTVSTFHNLGLNIIRKEHTRLGYKPGFSIFDETD------ 113
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
VK + TD++ + +S D
Sbjct: 114 -------------VKALMTDIMQKE------------------YSGD------------D 130
Query: 410 GMDVAK---ASGKT----PAEF----RKIGDEIGAAILENYNGILRSCNALDYHDLISCS 458
G+D K S K PAE R ++ A + +Y L++ NA+D+ DLI
Sbjct: 131 GVDEIKNMIGSWKNDLILPAEALENARNPKEQTAAIVYTHYQRTLKAYNAVDFDDLILVP 190
Query: 459 VKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSF 517
VKL P+V +++Q+ + ++VDE+QDT+A QY L+++L S N+ T+VGDDDQSI+++
Sbjct: 191 VKLFQEHPDVLEKWQNKVRYLLVDEYQDTNASQYLLVKLLIGSRNQFTVVGDDDQSIYAW 250
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GA + D+ + K + L +NYRST I+ A+ LI +N + K + ++ HG
Sbjct: 251 RGARPENLMLLKDDYPSLKVVMLEQNYRSTSRILRCANVLISNNPHAFE-KQLWSEMGHG 309
Query: 578 SKIIIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
+I + C NEDA+ + +I L ++ P Y AILYR K+ + +
Sbjct: 310 DEIRVIRCRNEDAEAERVAMEILTLHLRTDRP-----YSDFAILYRGNYQAKLIELKLQH 364
Query: 636 RKIPFNIHGV-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
++P+ + G +F+ ++ V+ ++A R + DD + RV + +E ++ +
Sbjct: 365 HQVPYRLSGGNSFFGRQEVKDLMAYFRLLVNPDDDNAFLRVIN---VPRREIGSTTLEKL 421
Query: 695 DKISTIRKCSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI 753
+T RK S +A ++ G + + +L R + + V
Sbjct: 422 GNYATERKVSMYAATEEMGLGEHLDSRY-----------------TDRLQRFKRWMDGVR 464
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
A P L + V+D D L +++ Y +++V F +
Sbjct: 465 QQCAQNDPIAAL--RSMVMDIDYENWLRQNSSSEKAADYRMSNVW------FLIEALKNT 516
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+++D++G + + +A I + R+ + + D V + T+H SKGLE+ VF+
Sbjct: 517 LEKDEEGGMTIEEA-IGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGME 575
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSR 930
E +P + ++EEERRL YV +TRAR+ L + + + PSR
Sbjct: 576 EEILPHRSSI------EADTIEEERRLAYVGITRARQTLAFTFADKRKQYGEIIDCAPSR 629
Query: 931 FLKEIP 936
FL E+P
Sbjct: 630 FLDELP 635
>gi|169832763|ref|YP_001694512.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
Hungary19A-6]
gi|168995265|gb|ACA35877.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
Hungary19A-6]
Length = 763
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 209/739 (28%), Positives = 336/739 (45%), Gaps = 135/739 (18%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLMK 121
Query: 350 EAVRLLE------NEKILV--VKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
++ L NE+ ++ + D++
Sbjct: 122 RILKQLNLDPKKWNERTILGTISNAKNDLID----------------------------- 152
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
DVA A A+ + +I A Y LR ++D+ DLI +++L
Sbjct: 153 ----------DVAYA-----AQAGDMYTQIVAQCYTTYQKELRQSESVDFDDLIMLTLRL 197
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGA 520
P+V YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GA
Sbjct: 198 FDQNPDVLTYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGA 257
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
D+ F KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I
Sbjct: 258 DMQNILDFEKDYPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQI 316
Query: 581 IIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKI 638
+ +E + F++ I L + N + A+LYR + + A + I
Sbjct: 317 VYYRADDELDEAVFVVRTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNI 371
Query: 639 PFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VID 692
P+ + G FY +K +R IIA L D+ + R+ E KR ++
Sbjct: 372 PYTMVGGTKFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGLGTVE 423
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV 752
I + ++ S + A+ +I + I G +S +L E + L SI+ +
Sbjct: 424 KIRDFANLQNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITEL 478
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
+ SV LE+ VD +LN L S + + ++ +FLS +
Sbjct: 479 VESV---------LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTT 521
Query: 813 NVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKA 872
+V +++ G ++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+
Sbjct: 522 DVTEEETG-LDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGM 577
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL------ 926
E PL E +EEERRL YV +TRA K ILY + +AN +LL
Sbjct: 578 EENVFPLSR-----ATEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNY 628
Query: 927 -QPSRFLKEIPHHLREVQA 944
+P+RF+ EI L E Q
Sbjct: 629 NRPTRFINEISSDLLEYQG 647
>gi|423351098|ref|ZP_17328750.1| ATP-dependent DNA helicase PcrA [Turicella otitidis ATCC 51513]
gi|404386928|gb|EJZ82062.1| ATP-dependent DNA helicase PcrA [Turicella otitidis ATCC 51513]
Length = 809
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 200/742 (26%), Positives = 337/742 (45%), Gaps = 117/742 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
LQ LND+Q AA LLIVAG GSGK G+ P +LA+TFT
Sbjct: 34 LQGLNDEQ-RAAVTHSGGSLLIVAGAGSGKTAVLTRRIAYVMARRGVQPGQVLAITFTNK 92
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EMR+R+ +VG A+ + ++TFHS +++ RS A+ +E S F IY RR
Sbjct: 93 AAAEMRERVAELVGP-QARRMWVATFHSVCVRILRSQAQLVEGLNSNFSIYDADDSRRLF 151
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
+ LE L K+ + L+ ++S+ K
Sbjct: 152 GMIAKDLE----LDTKKFTPRTLSN--------------------AVSNLK--------- 178
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
+ + + + + E R D+ A + + Y LR NALD+ DLI V + S+ PEV
Sbjct: 179 NELVGPEEAARRADETRNPFDKAVAEVFDEYQRRLRRANALDFDDLIGEVVGIFSSHPEV 238
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS---------HNRITIVGDDDQSIFSFNG 519
+ Y+ ++ ++VDE+QDT+ QY L+ L + + +VGD DQSI++F G
Sbjct: 239 AEYYRRRFRHVLVDEYQDTNHAQYRLIAELVGGRGEDSAVPSSELCVVGDSDQSIYAFRG 298
Query: 520 ADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSK 579
A I + F +D+ + I L +NYRST+ I+ AA+++I N R + KN+ T G
Sbjct: 299 ATIRNIEEFERDYPQAETILLEQNYRSTQTILSAANAVIARNDNRRE-KNLWTALGEGEP 357
Query: 580 IIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIP 639
I NE + +I +I + A+ G YG +A++YR + + + +P
Sbjct: 358 IRGYVADNEHDEARYIASEIEDLAAKG----TPYGDMAVMYRTNNASRAIEDVLMRSGVP 413
Query: 640 FNI-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIS 698
+ I G FY +K +R +IA LR D P V +R+++ +
Sbjct: 414 YRIVGGTRFYERKEIRDVIAYLRVL-----DNPDDVV----------SMRRIVNTPKRGI 458
Query: 699 TIRKCSFISAACDIFGAKIS--------------GTFKRSQLTQGRKVLLTLEMISKLVR 744
R F+S + G + G R+ + + ++L L S+ +
Sbjct: 459 GDRAVGFVSLHAENHGVSFAEALDAAAHDEVPMLGARGRNAIARFTELLDGLRRASRELV 518
Query: 745 RE----PSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDF 800
E P + ++T + + LE D L+ N+L SV + ++ +
Sbjct: 519 DEDTGIPRLGELVTEILEQTGYRAQLENSN--DVQDASRLDNLNELVSVAREFSSEAANL 576
Query: 801 LSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSK 860
A + ++ + L+AF++ +S + + VTL T+H +K
Sbjct: 577 ------AGLGDAPEPEEGEAPPGSLQAFLERVS--LVADADQLPDEGQGLVTLMTLHTAK 628
Query: 861 GLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD 920
GLE+ +VF+ + + P + ++K + EERRL YV +TRA+++L++ ++
Sbjct: 629 GLEFPVVFLPGWEDGQFPHLRALG---DQK--QLAEERRLAYVGITRAKRRLYLSRALVR 683
Query: 921 ANWQ--LLQP-SRFLKEIPHHL 939
++W + P SRFL++IP L
Sbjct: 684 SSWGSPVTNPASRFLQDIPEDL 705
>gi|417917644|ref|ZP_12561203.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis SK236]
gi|342830281|gb|EGU64620.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis SK236]
Length = 761
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 208/730 (28%), Positives = 334/730 (45%), Gaps = 117/730 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R + ++ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKERAYQL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+L++ + K +L T + NA + D
Sbjct: 121 --KRILKSLNLDPKKWNERTILGT------------ISNA-----------------KND 149
Query: 410 GMD-VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
+D VA A A+ + +I A E Y LR A+D+ DLI +++L P+V
Sbjct: 150 LIDEVAYA-----AQAGDMYTQIVAECYEAYQKELRQSEAVDFDDLIMLTLRLFDQHPDV 204
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDS 527
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+
Sbjct: 205 LTYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILD 264
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KD+ + K + L NYRST+ I++AA+ +I++N R + KN+ T N G +I+ ++
Sbjct: 265 FEKDYPDAKVVLLEENYRSTKTILQAANDVIKNNRHR-RPKNLWTQNEDGEEIVYYRAND 323
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
E + F+ I E + + A+LYR + + A + IP+ + G
Sbjct: 324 EQDEAVFVAKTIEELSREAG---YKHRDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTK 380
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIR 701
FY +K +R +IA L D+ + R+ E KR +D I + ++
Sbjct: 381 FYSRKEIRDVIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVDKIRDFAQMQ 432
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ S + A+ +I + I G ++ +L E + +L +I+ ++ V +
Sbjct: 433 ESSLLDASANIMLSGIKGKAAQAIWDFANLILDLRERLDQL-----TITELVEEVLDKT- 486
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
Y++ L N+ N L S Q + ++ +FLS E G +D+ G
Sbjct: 487 -GYMM-----------ALTNQGN-LES--QARIENIQEFLSVT-KNFDENGETVEDESGV 530
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
+ + D +T+ + + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 531 ETLSRFLNDLALIADTDDGAQETSE----VTLMTLHAAKGLEFPVVFLIGMEENVFPLSR 586
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKE 934
E +EEERRL YV +TRA K LF + +AN +LL +P+RF+ E
Sbjct: 587 -----AAEDPDELEEERRLAYVGITRAEKVLF----LTNANSRLLFGRTSYNRPTRFINE 637
Query: 935 IPHHLREVQA 944
I L Q
Sbjct: 638 ISSDLLTYQG 647
>gi|302771295|ref|XP_002969066.1| hypothetical protein SELMODRAFT_440582 [Selaginella moellendorffii]
gi|300163571|gb|EFJ30182.1| hypothetical protein SELMODRAFT_440582 [Selaginella moellendorffii]
Length = 941
Score = 224 bits (570), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 108/200 (54%), Positives = 139/200 (69%), Gaps = 6/200 (3%)
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISG 524
F E ++W ++VDEFQDTS MQY LL + H R+T+VG D I SFNGA+ G
Sbjct: 107 FHTALAECHNTWAYVLVDEFQDTSVMQYKLLSL---HGRVTVVGSD---IISFNGANSLG 160
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
F +FR D NYKE+R +NYRST CIVEAA +IQHN C K V+ D+ G K ++ E
Sbjct: 161 FSTFRNDVPNYKEVRPHQNYRSTGCIVEAARCVIQHNDSGCSAKVVRMDDDFGEKTVVME 220
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG 644
C NE+AQCAF++D+ILE AS + + AILYR+QV+GK+FQ+AFR RKIPFN+HG
Sbjct: 221 CRNEEAQCAFVVDEILEKASVASDIKPVFANFAILYRQQVTGKIFQSAFRSRKIPFNMHG 280
Query: 645 VAFYRKKVVRAIIAMLRTTL 664
VA Y KKVV+ +IA+L T+L
Sbjct: 281 VAVYCKKVVKDVIALLWTSL 300
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 79/144 (54%), Gaps = 17/144 (11%)
Query: 802 STKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKG 861
S+K +EE + + GC +LKAF+D+I ETE+FRT + +N NSVT+TT+HQSKG
Sbjct: 481 SSKNLGLQEEVKPNSRQLGCSVLLKAFLDHIIVGETENFRTCQEENHNSVTMTTMHQSKG 540
Query: 862 LEWDIVFVAKANETEIPLVHEFN----GAVNEKGTSVEEERRLLY-----------VAMT 906
LEWD VF+ KANE E PL+HE + E+G + R LY V+ T
Sbjct: 541 LEWDRVFIVKANELETPLLHESSSLETSGCEEQGLYI--HRNTLYHLLFPLAYADQVSFT 598
Query: 907 RARKKLFILYVMMDANWQLLQPSR 930
+ F LY+ W+ L R
Sbjct: 599 GRKYIYFYLYLYKSVKWEKLPAER 622
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 8/68 (11%)
Query: 1073 FHYAEYVLRWEKIPADQRAHMIREKQEHFQKLRIENSMGSSAPTSKQIAFLRSLGCTEAP 1132
+ Y ++WEK+PA E+QE+ Q+ E +MGS T+KQIAFLR GCT P
Sbjct: 606 YLYLYKSVKWEKLPA--------ERQEYCQQKCSERTMGSVPATAKQIAFLRRFGCTVNP 657
Query: 1133 ASRLHASR 1140
+SRLHAS+
Sbjct: 658 SSRLHASK 665
>gi|168186071|ref|ZP_02620706.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum C str.
Eklund]
gi|169296014|gb|EDS78147.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum C str.
Eklund]
Length = 760
Score = 224 bits (570), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 213/738 (28%), Positives = 351/738 (47%), Gaps = 141/738 (19%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAAS 292
LN +Q EAA + P+L++AG GSGK I NILA+TFT AA
Sbjct: 7 LNKEQYEAATA-IEGPVLVLAGAGSGKTRVLTYRIAHMIEDLEIPQYNILAITFTNKAAG 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM+DRI +V + + +STFHS +++ R +KL F IY Q+ + + +
Sbjct: 66 EMKDRIKKLVSE-NIDSMWVSTFHSCCVRILRREIDKLGYNKNFAIYDSSDQKNLVKQCM 124
Query: 353 RLLE------NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
+ L NEK ++ K G + +L +Y K
Sbjct: 125 KELNISDKDINEKEIISK------------IGKQKDNLITAE-------------EYKK- 158
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
+ +FRK + I L Y L++ NALD+ DLI +V+L P
Sbjct: 159 ------------RNEKDFRK--NRIAEVYLL-YQKKLKNSNALDFDDLIFKTVELFKKHP 203
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGF 525
EV + YQ+ +K I+VDE+QDT+ QY L+++LAS H I +VGDDDQ I+ + GADI
Sbjct: 204 EVLEFYQNKFKYIMVDEYQDTNKTQYQLVKMLASAHRNIFVVGDDDQCIYQWRGADIKNI 263
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
F KD+ K ++L +NYRS I+ AA+++I++N +R K ++T N +G +I I
Sbjct: 264 LDFEKDYPEAKVVKLEQNYRSKANILNAANTVIKNNSQRKD-KVLRTQNENGDRIKIYRA 322
Query: 586 HNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN- 641
+++ + FI I +I++ + SY AILYR +VF+ F +R IP+
Sbjct: 323 YSDMDEGIFIANEIKRIIKKENR------SYRDFAILYRTNAQSRVFEDIFMKRDIPYRI 376
Query: 642 IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH--IDKI-- 697
I G+ FY +K ++ I A L+ DD RR+ KR I + KI
Sbjct: 377 IGGLKFYDRKEIKDITAYLKFINNLQDDISLRRIINV--------PKRAIGAATVTKIQD 428
Query: 698 --STIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITS 755
+ + +C + S D+ I G KRS + + +I+ R + + S
Sbjct: 429 FANYMDECMY-SVLLDV--ENIPGLSKRSISSINK----FTSLINGFNRTKDKV-----S 476
Query: 756 VANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVD 815
V+N++ + +LE + K L + N++ + + + ++ + +S AA E N
Sbjct: 477 VSNLIQE--ILESTGYM-----KELKDSNEIEDISR--IENIKELVS----AAVEFENTS 523
Query: 816 QDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
+DK L AF++ I+ + +++ ++ ++ + T+H +KGLE+ +VF+
Sbjct: 524 EDKS-----LSAFLEKITLVSDVDNY----DEDTDTTVMMTLHSAKGLEFPVVFMVGMEN 574
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------Q 927
P E + +EE RRL YV +TRA+++L+ M A+ + +
Sbjct: 575 GIFPGAQSL-----ENFSEMEESRRLCYVGITRAKERLY----MTSASTRKVFGRTVAYS 625
Query: 928 PSRFLKEIPHHLREVQAE 945
S F+ EI +L+E+ E
Sbjct: 626 ESDFISEISPNLKEMVRE 643
>gi|365904944|ref|ZP_09442703.1| ATP-dependent DNA helicase PcrA [Lactobacillus versmoldensis KCTC
3814]
Length = 748
Score = 224 bits (570), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 209/717 (29%), Positives = 340/717 (47%), Gaps = 110/717 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LN +Q +AA PLLI+AG GSGK + P +ILA+TFT
Sbjct: 6 LKGLNPEQ-QAAVKATEGPLLIMAGAGSGKTRVLTHRVAYLIQEKNVMPWHILAITFTNK 64
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++RIG ++ +A +++ +STFHS +++ R +K+ + F I +QR +
Sbjct: 65 AAKEMKERIGKLLNEA-GEDVWVSTFHSLCVRILRRDIDKIGYSKSFTISDPAEQRTLMK 123
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ ++KR++ D D +++A+ +Y+K
Sbjct: 124 Q-----------ILKRMNLDPKKYDPRS--------ILSAISNAKNDLLGPAEYSK---- 160
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ K+P E + A + Y + ALD+ DLI + L P+V
Sbjct: 161 -------NAKSPFE------QTVATCYDMYEKEMNRNQALDFDDLIMQTNVLFDEHPDVL 207
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDSF 528
+ YQD ++ I VDE+QDT+ QY L++ L + R + +VGD DQSI+ + GA+I F
Sbjct: 208 ERYQDKFQYIHVDEYQDTNEAQYKLVKHLGAKYRNVCVVGDADQSIYGWRGANIKNIMDF 267
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
+ D+ I+L +NYRST+ I++AA+ +I +NV R + K + TDN G I NE
Sbjct: 268 QDDYPEATSIKLEQNYRSTQTILKAANKVINNNVNR-KPKELWTDNKKGDPIDFYRAQNE 326
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVAF 647
+ F+I++I G +YG AILYR +VF+ + IP+ I G F
Sbjct: 327 SDEALFVIEQIKNLLLKG----FNYGDYAILYRTNAQSRVFEEKLIQSNIPYKIVGGHKF 382
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTI---RK 702
Y +K ++ I+A LR D ++RV + KR I I+K+ T
Sbjct: 383 YDRKEIKDILAYLRLIANPEDSMSFQRVINS--------PKRGIGPGTIEKLQTFADEHD 434
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + AA ++ + ++ R L + KV+ +L +S+ S++ ++T
Sbjct: 435 WSLLEAAGNVDLSALAAK-PRKTLAEFAKVINSLSKMSQT----SSMTDLMTD------- 482
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKE-EGNVDQDKKGC 821
LL+ +D L+ N+L S + ++T+F E + +VD+ +
Sbjct: 483 --LLDNSGYLDD-----LHHQNNLESQTRIENLQELQTVTTQFDQTYEPDDDVDETR--- 532
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
L +F+ +S + + +++ VTL T+H +KGLE+ +VF+ E P
Sbjct: 533 ---LSSFLTDLSLTSDQD---ELEEDQKEVTLMTLHAAKGLEFPVVFLVGMEEGIFP--- 583
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
+ K +EEERRL YV +TRA KKLFI M+ Q Q SRF+ EI
Sbjct: 584 --SSRSMMKEEDMEEERRLAYVGITRAEKKLFITNAYSRMLYGRVQSNQMSRFVDEI 638
>gi|212692987|ref|ZP_03301115.1| hypothetical protein BACDOR_02488 [Bacteroides dorei DSM 17855]
gi|345515666|ref|ZP_08795167.1| hypothetical protein BSEG_02520 [Bacteroides dorei 5_1_36/D4]
gi|423231736|ref|ZP_17218139.1| hypothetical protein HMPREF1063_03959 [Bacteroides dorei
CL02T00C15]
gi|423246319|ref|ZP_17227392.1| hypothetical protein HMPREF1064_03598 [Bacteroides dorei
CL02T12C06]
gi|212664456|gb|EEB25028.1| UvrD/REP helicase [Bacteroides dorei DSM 17855]
gi|229436302|gb|EEO46379.1| hypothetical protein BSEG_02520 [Bacteroides dorei 5_1_36/D4]
gi|392626962|gb|EIY21004.1| hypothetical protein HMPREF1063_03959 [Bacteroides dorei
CL02T00C15]
gi|392636310|gb|EIY30193.1| hypothetical protein HMPREF1064_03598 [Bacteroides dorei
CL02T12C06]
Length = 796
Score = 224 bits (570), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 209/740 (28%), Positives = 349/740 (47%), Gaps = 119/740 (16%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFT 287
+ YL+ LN+ Q +A + P L++AG GSGK G +P +ILA+TFT
Sbjct: 2 TNYLEELNESQRDAVLYN-EGPSLVIAGAGSGKTRVLTYKIAYLLEQGYTPWSILALTFT 60
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM++RI VG A+ L + TFHS ++ R A+ + +S F IY +
Sbjct: 61 NKAAREMKERIARQVGD-QARYLWMGTFHSIFSRILRCEAQVIGFSSNFTIYDSSDSKS- 118
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHF--GYMRASLFMMNAMLFFS---MSSFKLCQ 402
++K I +M D + G ++A + L F +S+ +L Q
Sbjct: 119 --------------LIKSIVKEMQLDDKTYKSGLIQARISNAKNHLVFPDAYVSNAELYQ 164
Query: 403 YNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLL 462
Y+ + K PA I Y R +A+D+ DL+ + L
Sbjct: 165 YD-----------LNAKVPAT---------RDIYRQYWERCRQSDAMDFDDLLLYTYMLF 204
Query: 463 STFPEVFQEYQDSWKAIIVDEFQDTSAMQYSL-LQILASHNRITIVGDDDQSIFSFNGAD 521
PE+ ++Y + ++ ++VDE+QDT+ Q+S+ LQ+ H R+ +VGDD QSI+SF GA+
Sbjct: 205 RDHPEICRKYAEQFRYVLVDEYQDTNFAQHSIVLQLTQEHQRVCVVGDDAQSIYSFRGAN 264
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII 581
I F + + K +L +NYRST+ IV AA+SLI+ N ++ + K V ++ + G I
Sbjct: 265 IDNILKFTQLYKGAKLFKLEQNYRSTQTIVCAANSLIEKNSEQIK-KEVFSEKAKGEPIG 323
Query: 582 IKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN 641
+ +++ + + ++I++ S SY AILYR ++F+ A R+R +P+
Sbjct: 324 VFNAYSDVEEGEIVANQIVKLRSR---EHYSYNDFAILYRTNAQSRIFEEALRKRSLPYK 380
Query: 642 IH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTI 700
I+ G++FY++K ++ +I+ R + D+ ++RV R I +T+
Sbjct: 381 IYGGLSFYQRKEIKDVISYFRLAVNPNDEEAFKRVLNY--------PARGIGD----TTL 428
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
K +A + + L + + L+ +LV+ S +
Sbjct: 429 NKVIDAAAQHHVSLWMVLEEPLAYGLNINKGMHTKLQGFRELVK----------SFIVEI 478
Query: 761 PQKYLLEQRAVVDFDGGKLLNE---DNDLRSV-----LQYLLADVTDFLSTKFTAAKEEG 812
P+K E A++ G ++NE ND ++ ++ L+ + DF + + +EEG
Sbjct: 479 PKKNAYELGAMIVRQSG-IMNEIYQSNDPENLSRQENIEELINGMHDFCAIR----EEEG 533
Query: 813 NVDQDKKGCINVLKAFIDYISERE--TEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVA 870
N N+L D++SE T+ + D E +TL TIH +KGLE+ VFV
Sbjct: 534 NE--------NIL--LTDFLSEVSLLTDQDNEKEEDAE-KITLMTIHSAKGLEFKNVFVV 582
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ--- 927
E P N +EEERRL YVA+TRA + ++ + + ++
Sbjct: 583 GLEENLFPSALSLNSY-----KELEEERRLFYVAITRAEEHCYLSFAKSRFKYGKMEFSS 637
Query: 928 PSRFLKEIP-HHLREVQAEQ 946
PSRFLK+I H L+ Q EQ
Sbjct: 638 PSRFLKDIDVHFLKLPQEEQ 657
>gi|205372453|ref|ZP_03225266.1| PcrA [Bacillus coahuilensis m4-4]
Length = 739
Score = 224 bits (570), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 211/731 (28%), Positives = 338/731 (46%), Gaps = 112/731 (15%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFT 287
+ L +N +Q + A PLL++AG GSGK I+P NILA+TFT
Sbjct: 7 RLLNGMNPEQ-KKAVQTTDGPLLLMAGAGSGKTRVLTHRIAYLMVEKQIAPYNILAITFT 65
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM++RI I+G A A+++ +STFHS +++ R +++ F I G Q+
Sbjct: 66 NKAAREMKERISKILGGA-AEDIWVSTFHSMCVRILRRDIDRMGYNRNFTILDSGDQQS- 123
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
VVK I D F RA L +++
Sbjct: 124 --------------VVKSILKDKNIDPKKFD-PRAILGIISN------------------ 150
Query: 408 RDGMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
AK KTP +F K D++ + + Y LR ALD+ DLI +++L
Sbjct: 151 ------AKNELKTPEDFSKTSGSYFDQVASDVYIEYQKRLRKNQALDFDDLIMTTIQLFQ 204
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADI 522
PEV + YQ ++ I VDE+QDT+ QY L++++AS + +VGD DQSI+ + GADI
Sbjct: 205 KVPEVLEYYQRKFQYIHVDEYQDTNRAQYMLVKLMASRFQNLCVVGDSDQSIYGWRGADI 264
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
+ SF KD+ I L +NYRST+ I++AA+ +I++N R + K + TDN G KI
Sbjct: 265 ANILSFEKDYPRASVIFLEQNYRSTKRILQAANHVIENNANR-KPKKLWTDNMEGEKITY 323
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI 642
N+ + ++ +I +G + IAILYR +V + + I ++I
Sbjct: 324 YRGDNQQGEAQYVAGQIKSMVDSGKRKLS---EIAILYRTNAMSRVIEEVLLKSNIQYSI 380
Query: 643 -HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
G FY +K ++ I+A LR DD +R+ + ++ +D I + +
Sbjct: 381 VGGTKFYDRKEIKDILAYLRLVANPDDDISLQRIIN---VPKRGVGSTSLDKIARYADDH 437
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
S A + +S ++ L + R ++L E + + SV +V
Sbjct: 438 NISMFRALGEADFIGVSPKVAKA-LLEFRHLVLGYEQQQEYL-----------SVTELVE 485
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
+ +LE+ D +L + + S Q L ++ +FLS T + E+ + D+
Sbjct: 486 E--ILEKSGYRD-----MLKAEKSIES--QSRLENIDEFLSV--TKSFEDTSEDKSLVSF 534
Query: 822 IN--VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
+ L A ID + E + +++VTL T+H +KGLE+ +VF+ E P
Sbjct: 535 LTDLALVADIDSLDEDDLP---------QDAVTLMTLHSAKGLEFPVVFLMGMEEGVFPH 585
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQL--LQP-SRFLKEIP 936
+EEERRL YV +TRA ++LF+ M + + P SRF+ EIP
Sbjct: 586 SRSLMEE-----DEMEEERRLAYVGITRAEEELFLTNAQMRTLYGRTNMNPVSRFIGEIP 640
Query: 937 HHLREVQAEQS 947
L + A +S
Sbjct: 641 DELLDNMAIES 651
>gi|322391967|ref|ZP_08065431.1| ATP-dependent DNA helicase PcrA [Streptococcus peroris ATCC 700780]
gi|321145193|gb|EFX40590.1| ATP-dependent DNA helicase PcrA [Streptococcus peroris ATCC 700780]
Length = 763
Score = 224 bits (570), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 213/732 (29%), Positives = 334/732 (45%), Gaps = 121/732 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R + ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYGL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGD---EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
DVA AS + GD I A Y LR ++D+ DLI +++L P
Sbjct: 153 --DVAYAS--------QSGDLYTNIVAKCYTAYQKELRQSESVDFDDLIMLTLRLFDQNP 202
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGF 525
+V YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+
Sbjct: 203 DVLTYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNI 262
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
F KD+ + K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+
Sbjct: 263 LDFEKDYPDAKVVLLEENYRSTKTILQAANDVIKNNKNR-RPKNLWTQNADGEQIVYYRA 321
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHG 644
++E + F+ I E G A + A+LYR + + A + IP+ + G
Sbjct: 322 NDEQDEAVFVAKTIDEL---GRAHNFLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGG 378
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKIST 699
FY +K +R IIA L D+ R+ E KR ++ I +
Sbjct: 379 TKFYSRKEIRDIIAYLNLIANLSDNISLERIIN--------EPKRGIGPGTVEKIRDFAN 430
Query: 700 IRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANM 759
+++ S + A+ +I + I G +S +L E + +L I+ ++ +V
Sbjct: 431 MQEMSMLDASANIMLSGIKGKVAQSIWDFANMILDLREQLDQL-----KITELVEAV--- 482
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
LE+ VD +LN L S + + ++ +FLS T ++ Q+ +
Sbjct: 483 ------LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSV--TKNFDDNPESQEGE 527
Query: 820 GCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 528 TGLDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFIIGMEENVFPL 584
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFL 932
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 585 SR-----AAEDMDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTSYNRPTRFI 635
Query: 933 KEIPHHLREVQA 944
EI L Q
Sbjct: 636 NEISSDLLTYQG 647
>gi|422324128|ref|ZP_16405165.1| ATP-dependent DNA helicase PcrA [Rothia mucilaginosa M508]
gi|353344584|gb|EHB88892.1| ATP-dependent DNA helicase PcrA [Rothia mucilaginosa M508]
Length = 985
Score = 224 bits (570), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 216/755 (28%), Positives = 338/755 (44%), Gaps = 161/755 (21%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAA 291
LN++Q EA S PLLIVAG GSGK +P ILA+TFT AA
Sbjct: 144 GLNERQEEAVLHSGS-PLLIVAGAGSGKTRVLTHRIAYLLATHRATPGQILAITFTNKAA 202
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEA 351
+EMR+RI ++VG AK + ISTFHSF +++ R A L S F IY ++
Sbjct: 203 AEMRERIEALVGP-RAKHMWISTFHSFCVRVLRREAAALGLKSTFTIYDS-------TDS 254
Query: 352 VRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
RLL L++K ++ D R S + N ++ + ++ N +E
Sbjct: 255 QRLLS----LIIKELNLDTKKFTAKAVGNRISA-LKNELVSAEAYASRVASDNPYE---- 305
Query: 412 DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQE 471
KT A+ + Y LR+ N+LD+ DLI +V LL FPE+
Sbjct: 306 -------KTIAQIYTV-----------YTQRLRAANSLDFDDLIGRTVFLLKKFPEIANY 347
Query: 472 YQDSWKAIIVDEFQDTSAMQYSLL-QILASHNR----------------ITIVGDDDQSI 514
Y+ ++ I+VDE+QDT+ QY L+ +++ +H + +T+VGD DQSI
Sbjct: 348 YRRKFRHILVDEYQDTNHAQYQLVRELVGAHTKAPADRGPYPDAVPPAELTVVGDSDQSI 407
Query: 515 FSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDN 574
++F GADI F KD+ N I L +NYRST+ I+ AA+++I+ N R + K + T +
Sbjct: 408 YAFRGADIRNITDFEKDYPNAHTILLEQNYRSTQNILSAANAVIERNPDR-RPKKLWTAS 466
Query: 575 SHGSKIIIKECHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQT 631
G+KII +E A+ +I ID++ + P G +AI YR + +
Sbjct: 467 GAGAKIIGYVAESEHAEARYITREIDRLADEHGVQP------GDVAIFYRTNAQSRTLED 520
Query: 632 AFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV 690
+P+ + G FY +K ++ +A LR DD RR+ E KR
Sbjct: 521 MLMRAGLPYRVVGGTRFYERKEIKDALAYLRALSNPDDDVNVRRILN--------EPKRG 572
Query: 691 IDH-----IDKISTIRKCSFISA---ACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKL 742
I + + ++ + SF +A A DI G + K ++ + ++ ++++
Sbjct: 573 IGAKSESVVAEYASANRISFYAAARQAADIPGLGAAAVKKYAEFVR------LMDDLAQI 626
Query: 743 VRREPS---ISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTD 799
R EP+ + AV+ YL RA D +D L LL + +
Sbjct: 627 ARTEPAATCLEAVLEQTG------YLASLRASKDI-------QDESRVENLSELLDAMVE 673
Query: 800 FLSTKFTAAKEEGNVDQDKKGCINVLKAFIDY---ISERETEHFRTQRHDNENS------ 850
F E N D L+ F+++ +++ ++ R + EN+
Sbjct: 674 F---------ETENPGAD-------LEQFLEHVALVADADSIPNRPASAEGENASAAQIA 717
Query: 851 -----------VTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERR 899
VTL T+H +KGLE+ +VF+ P H+ +EK S EERR
Sbjct: 718 AEAAEAKAQGMVTLMTLHTAKGLEFPVVFLTGMEHGLFP--HQ-RALTDEKEMS--EERR 772
Query: 900 LLYVAMTRARKKLFILYVMMDANW---QLLQPSRF 931
L YV +TRA ++L++ W Q PS F
Sbjct: 773 LAYVGLTRAMERLYLTRSETRTMWGKSQFNPPSPF 807
>gi|148994163|ref|ZP_01823478.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP9-BS68]
gi|168488930|ref|ZP_02713129.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP195]
gi|417679068|ref|ZP_12328465.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA17570]
gi|418125740|ref|ZP_12762649.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA44511]
gi|418191657|ref|ZP_12828161.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47388]
gi|418214291|ref|ZP_12841026.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA54644]
gi|418234307|ref|ZP_12860886.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA08780]
gi|419484026|ref|ZP_14023802.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA43257]
gi|419508181|ref|ZP_14047834.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA49542]
gi|421220256|ref|ZP_15677104.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2070425]
gi|421222592|ref|ZP_15679381.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2070531]
gi|421278885|ref|ZP_15729693.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA17301]
gi|147927406|gb|EDK78436.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP9-BS68]
gi|183572486|gb|EDT93014.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP195]
gi|332073447|gb|EGI83926.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA17570]
gi|353797213|gb|EHD77549.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA44511]
gi|353857558|gb|EHE37521.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47388]
gi|353871574|gb|EHE51445.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA54644]
gi|353888552|gb|EHE68326.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA08780]
gi|379583537|gb|EHZ48414.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA43257]
gi|379611899|gb|EHZ76621.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA49542]
gi|395587961|gb|EJG48298.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2070425]
gi|395588142|gb|EJG48476.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2070531]
gi|395880318|gb|EJG91371.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA17301]
Length = 763
Score = 224 bits (570), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 212/744 (28%), Positives = 334/744 (44%), Gaps = 145/744 (19%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLMK 121
Query: 350 EAVRLLE------NEKILV--VKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
++ L NE+ ++ + D++
Sbjct: 122 RILKQLNLDPKKWNERTILGTISNAKNDLID----------------------------- 152
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
DVA A A+ + +I A Y LR ++D+ DLI +++L
Sbjct: 153 ----------DVAYA-----AQAGDMYTQIVAQCYTTYQKELRQSESVDFDDLIMLTLRL 197
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGA 520
P+V YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GA
Sbjct: 198 FDQNPDVLTYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGA 257
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
D+ F KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I
Sbjct: 258 DMQNILDFEKDYPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQI 316
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
+ C +++ A + + ++ S + + A+LYR + + A + IP+
Sbjct: 317 VYY-CADDELDEAVFVARTIDELSRSQNFL--HKDFAVLYRTNAQSRTIEEALLKSNIPY 373
Query: 641 N-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHI 694
+ G FY +K +R IIA L D+ + R+ E KR ++ I
Sbjct: 374 TMVGGTKFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKI 425
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+ ++ S + A+ +I + I G +S +L E + L SI+ ++
Sbjct: 426 RDFANLQNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITELVE 480
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST------KFTAA 808
SV LE+ VD +LN L S + + ++ +FLS A
Sbjct: 481 SV---------LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVTKNFDDTTDVA 524
Query: 809 KEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIHQSKGLEWDIV 867
+EE +D+ + +N L D T E S VTL T+H +KGLE+ +V
Sbjct: 525 EEETGLDKLSR-FLNDLALIAD-----------TDSGSQETSEVTLMTLHAAKGLEFPVV 572
Query: 868 FVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL- 926
F+ E PL E +EEERRL YV +TRA K ILY + +AN +LL
Sbjct: 573 FLIGMEENVFPLSR-----ATEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLF 623
Query: 927 ------QPSRFLKEIPHHLREVQA 944
+P+RF+ EI L E Q
Sbjct: 624 GRTNYNRPTRFINEISSDLLEYQG 647
>gi|421281070|ref|ZP_15731868.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA04672]
gi|395882231|gb|EJG93278.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA04672]
Length = 763
Score = 224 bits (570), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 215/732 (29%), Positives = 328/732 (44%), Gaps = 121/732 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + + N +
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTIL-----------GTISNAKNNLID-- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ +E
Sbjct: 266 EKDYPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRADDE 324
Query: 589 DAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
+ F+ I L + N + A+LYR + + A + IP+ + G
Sbjct: 325 LDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGT 379
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTI 700
FY +K +R IIA L D+ + R+ E KR ++ I + +
Sbjct: 380 KFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGLGTVEKIRDFANL 431
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
+ S + A+ +I + I G +S +L E + L SI+ ++ SV
Sbjct: 432 QNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITELVESV---- 482
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
LE+ VD + E ++ L+ +F TK +EE +D+ +
Sbjct: 483 -----LEKTGYVDILNAQATLESKARVENIEEFLSVTKNFDDTK-DVTEEETGLDKLSR- 535
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIHQSKGLEWDIVFVAKANETEIPL 879
+N L D T E S VTL T+H +KGLE+ +VF+ E PL
Sbjct: 536 FLNDLALIAD-----------TDSGSQETSEVTLMTLHAAKGLEFPVVFLIGMEENVFPL 584
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFL 932
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 585 SR-----ATEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFI 635
Query: 933 KEIPHHLREVQA 944
EI L E Q
Sbjct: 636 NEISSDLLEYQG 647
>gi|415706955|ref|ZP_11461802.1| Superfamily I DNA and RNA helicase [Gardnerella vaginalis 0288E]
gi|388053955|gb|EIK76900.1| Superfamily I DNA and RNA helicase [Gardnerella vaginalis 0288E]
Length = 961
Score = 224 bits (570), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 230/836 (27%), Positives = 375/836 (44%), Gaps = 148/836 (17%)
Query: 182 EETHQNDNSCTHLNASLESVTTNENIRMDISMD-LAGDMKSSMEKTDTIQTIKT------ 234
+ + Q+D S + NA + N+++ ++S +AGD S + +++ Q+ +T
Sbjct: 16 DSSEQSDASIS--NAPISDAPINKDMTSEVSASTVAGDF--SAQYSNSAQSSQTAQSSAA 71
Query: 235 ----------QNMPD-EYSKYLQSLNDQQLEAACGDMSTP-LLIVAGPGSGKG------- 275
N+P+ L+ LN QQ +A + P LLI AG GSGK
Sbjct: 72 AQYAQTSAQSSNIPEINPQSLLEGLNPQQSKAV--QYTGPALLIGAGAGSGKTRVLTRRI 129
Query: 276 --------ISPSNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHA 327
PS ILA+TFT AA+EMR+R+ S++G +A + +STFHS +++ R+H
Sbjct: 130 AWILANRKAWPSQILAITFTNKAAAEMRERLASLIGN-SANSMWVSTFHSACVKILRAHG 188
Query: 328 EKLERTSEFLIYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMM 387
+ + S F IY R V+++ +E + +K+ + +L + + S F
Sbjct: 189 DSIGLKSGFSIYDSSDCERL----VKIIASELNIDIKKFTPKLLLS-------KISDFKN 237
Query: 388 NAMLFFSMSSFKLCQYNKFERDGMDVAKASGKTPAEFRKIG--DEIGAAILENYNGILRS 445
N + + L Y + G V+ AS F G D + AA+ Y L
Sbjct: 238 NLVTWQE----NLKNYAPDYKPGASVSGAS-----SFNAAGNADALYAAVYAEYQNRLSV 288
Query: 446 CNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS----- 500
NA+D+ DLI +VKLL P+V Y+ ++ I+VDE+QDT+ QY L++ LA
Sbjct: 289 SNAVDFDDLIMLTVKLLRQNPQVSAYYKRKFRYILVDEYQDTNHAQYVLIRELAGVDDAG 348
Query: 501 --------------------------HNRITIVGDDDQSIFSFNGADISGFDSFRKDFLN 534
+ IT+VGD DQSI++F GADI F +DF +
Sbjct: 349 VDDAGVDDYSTDSTVSPVSPDSTQLPQSSITVVGDSDQSIYAFRGADIRNIQDFEQDFPS 408
Query: 535 YKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAF 594
I L +NYRST+ I++AA+++I +N R + K + T GS I+ N + ++
Sbjct: 409 ATTIMLEQNYRSTQTILDAANAVISNNTNR-KPKKLWTSLGKGSPIVGYVADNAQGEASW 467
Query: 595 IIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFYRKKVV 653
+ +I A +Y IAI+YR + + A + +P+ + G FY ++ V
Sbjct: 468 VAQEIARLAGEDG---VNYSDIAIMYRANSQSRSLEDALIKSGLPYQLVGGTKFYERREV 524
Query: 654 RAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIF 713
+ +A L++ DD RR+ + ++ R I + SF SA I
Sbjct: 525 KDALAYLQSIANPDDDVNMRRILN---VPKRGLGARAESQITSYAKENSISFWSALSQI- 580
Query: 714 GAKIS---GTFKRS--QLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQ 768
KI+ G R+ L R ++ +L K +PS V N++ + LL+
Sbjct: 581 -DKIAEQIGISSRTFNALKSFRDLMTSLIDFMKANDSKPS-----KVVENVLNESGLLQD 634
Query: 769 RAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV-DQDKKGCINVLKA 827
L E D + + V + + AA+ E N D + G +
Sbjct: 635 -----------LRESKDPQDEFR-----VDNLSQLQSVAAEYEQNTPDANVAGFLETTAL 678
Query: 828 FIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAV 887
D ++ Q D VTL T+H +KGLE+ +VF+ + P +
Sbjct: 679 VAD------SDQLPDQGEDT-GKVTLMTLHTAKGLEYPVVFLTGMEQGTFPHSRCVD--- 728
Query: 888 NEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW----QLLQPSRFLKEIPHHL 939
N+K + EERRL YV +TRA+K L++ + + W +++Q S+FL EIP L
Sbjct: 729 NQK--ELCEERRLAYVGITRAKKILYVTWAAERSQWGKSAEMIQ-SQFLDEIPADL 781
>gi|434380818|ref|YP_006702601.1| ATP dependent DNA helicase [Brachyspira pilosicoli WesB]
gi|404429467|emb|CCG55513.1| ATP dependent DNA helicase [Brachyspira pilosicoli WesB]
Length = 663
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 148/444 (33%), Positives = 229/444 (51%), Gaps = 60/444 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASE 293
LN++Q + A ++ P+L +AG GSGK GI PSNILA+TFT AA+E
Sbjct: 5 LNEEQ-KKAVEHINGPMLALAGAGSGKTRVITERIAYLIKNGIDPSNILAVTFTNKAANE 63
Query: 294 MRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVR 353
MR+RI S++ K K+L ISTFHSF +++ + +KL F IY R
Sbjct: 64 MRERIASLL-KEKPKQLVISTFHSFCVRVLKLDIDKLGYKKNFSIYSSSDSRT------- 115
Query: 354 LLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDV 413
L+ N +++ + + L D + + N M ++ ++ E+
Sbjct: 116 LIRN----ILREVKVNTLNYDENLFAWYIDRYKNNLM-----KPNEVVPHDDLEK----- 161
Query: 414 AKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQ 473
I + E Y L+ NA+D++DLI+ ++ L FP+V +YQ
Sbjct: 162 -----------------IAKRVYEVYQNYLKGYNAVDFNDLINLTIDLYINFPDVLDKYQ 204
Query: 474 DSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRKDF 532
+ +K I+VDE+QDT+ QY L +LAS + I +VGDDDQSI++F GAD+S SF ++
Sbjct: 205 ERFKYIMVDEYQDTNLAQYKLTSLLASKYKNIVVVGDDDQSIYAFRGADVSNILSFENEY 264
Query: 533 LNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQC 592
K I L +NYRST+ I+EAA ++I +N +R + K V N G +I C +E +
Sbjct: 265 PEAKIITLNKNYRSTKAILEAAHAVISNNTQR-KAKEVVAVNDEGIPPVIMPCEDERDEA 323
Query: 593 AFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGV-AFYRKK 651
FI + I + A N +Y + AIL+R ++F+ A R R IP+ + G FY +K
Sbjct: 324 QFIAENITQTAINKN---LNYENFAILFRMNSQSRIFEEALRFRGIPYTVVGAFQFYERK 380
Query: 652 VVRAIIAMLRTTLPGCDDGPYRRV 675
++ I+A L + D+ RV
Sbjct: 381 EIKDILAYLNLFVNPEDEVSLLRV 404
>gi|213971722|ref|ZP_03399828.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tomato T1]
gi|301382491|ref|ZP_07230909.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tomato
Max13]
gi|302062439|ref|ZP_07253980.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tomato
K40]
gi|302133040|ref|ZP_07259030.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|213923540|gb|EEB57129.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tomato T1]
Length = 669
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 186/719 (25%), Positives = 324/719 (45%), Gaps = 111/719 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+AMTFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ + LT+STFH+ L + R +L F I+
Sbjct: 60 AAREMKERVGTLLKGGEGRGLTVSTFHNLGLNIIRKEHTRLGYKPGFSIFDETD------ 113
Query: 350 EAVRLLENEKILVVKRISTDML----TTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNK 405
VK + TD++ + D ++ + L + +
Sbjct: 114 -------------VKALMTDIMQKEYSGDDGVDEIKNMIGSWKNDLILPTEALE------ 154
Query: 406 FERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+ + P E + A + +Y L++ NA+D+ DLI VKL
Sbjct: 155 -----------NARNPKE------QTAAIVYTHYQRTLKAYNAVDFDDLILVPVKLFQEH 197
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISG 524
P+V +++Q+ + ++VDE+QDT+A QY L+++L + N+ T+VGDDDQSI+++ GA
Sbjct: 198 PDVLEKWQNKVRYLLVDEYQDTNASQYLLVKLLIGTRNQFTVVGDDDQSIYAWRGARPEN 257
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+ D+ + K + L +NYRST I+ A+ LI +N + K + ++ HG +I +
Sbjct: 258 LMLLKDDYPSLKVVMLEQNYRSTSRILRCANVLISNNPHAFE-KQLWSEMGHGDEIRVIR 316
Query: 585 CHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI 642
C NEDA+ + +I L ++ P Y AILYR K+ + + ++P+ +
Sbjct: 317 CRNEDAEAERVAMEILTLHLRTDRP-----YSDFAILYRGNYQAKLIELKLQHHQVPYRL 371
Query: 643 HGV-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
G +F+ ++ V+ ++A R + DD + RV + +E ++ + +T R
Sbjct: 372 SGGNSFFGRQEVKDLMAYFRLLVNPDDDNAFLRVIN---VPRREIGSTTLEKLGNYATER 428
Query: 702 KCSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
K S +A +I G + + +L R + + V A
Sbjct: 429 KVSMYAATEEIGLGEHLDSRY-----------------TDRLQRFKRWMDGVRQQCAQND 471
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
P L + V+D D L +++ Y +++V F + +++D++G
Sbjct: 472 PIAAL--RSMVMDIDYENWLRQNSSSEKAADYRMSNVW------FLIEALKNTLEKDEEG 523
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
+ + +A I + R+ + + D V + T+H SKGLE+ VF+ E +P
Sbjct: 524 GMTIEEA-IGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPHR 582
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEIP 936
+ ++EEERRL YV +TRAR+ L + + + PSRFL E+P
Sbjct: 583 SSI------EADTIEEERRLAYVGITRARQTLAFTFAAKRKQYGEIIDCAPSRFLDELP 635
>gi|225351915|ref|ZP_03742938.1| hypothetical protein BIFPSEUDO_03519 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
gi|225157162|gb|EEG70501.1| hypothetical protein BIFPSEUDO_03519 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
Length = 905
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 215/746 (28%), Positives = 336/746 (45%), Gaps = 129/746 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
++ LN QQ+EA LLI AG GSGK G S+ILA+TFT A
Sbjct: 32 IKDLNPQQMEA-VKYYGQALLIGAGAGSGKTRVLTRRIAWLLAHGFWASSILAITFTNKA 90
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIE 350
A+EMR+R+ S+VG A+ + ISTFHS +++ R +++ TS F IY R
Sbjct: 91 AAEMRERLASLVGP-EAEHMWISTFHSACVRILRRDGKEIGLTSGFSIYDTADCERL--- 146
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
V+L+ + + KR + ML G + SL L S C Y +R G
Sbjct: 147 -VKLISGDLNIDTKRYTPRMLL--GKISDCKNSLISWQDQL----KSVN-CDYKPGQR-G 197
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
V+ +G DE+ A + Y L NA+D+ DLI +V+L P+V +
Sbjct: 198 YQVS--AGDV--------DELVAVMYAEYQYRLAMANAVDFDDLIMRTVELFQRCPQVSE 247
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILAS---------HNR---------ITIVGDDDQ 512
Y+ ++ I VDE+QDT+ QY L++ L+ H R IT+VGD DQ
Sbjct: 248 YYRHKFRYIFVDEYQDTNHAQYVLVRELSGIDSGEQPDPHMRGAGRVGPSWITVVGDSDQ 307
Query: 513 SIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQT 572
SI++F GADI F +DF N K I L +NYRST+ I++AA+++I N R + K + T
Sbjct: 308 SIYAFRGADIRNIQDFEQDFPNAKTIMLEQNYRSTQTILDAANAVIARNENR-KPKKLWT 366
Query: 573 DNSHGSKIIIKECHNEDAQCAFIIDKILE-HASNGPASICSYGSIAILYRRQVSGKVFQT 631
G KI+ N + +I ++I H G +Y IAI+YR + +
Sbjct: 367 ALGEGDKIVGYAADNAQQEAGWIANEIARIHNEEG----VAYRDIAIMYRANAQSRSLEE 422
Query: 632 AFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV 690
A +P+ + G FY ++ ++ +A L+ + D+ RR+ KR
Sbjct: 423 AMINANLPYQLVGGTKFYERREIKDALAYLQAIVNPADNVNVRRILNV--------PKRG 474
Query: 691 IDHIDKISTIRKCSFISAACDIFGA----------KISGTFKRSQ--LTQGRKVLLTLEM 738
+ +R +++ D G +I G R+ L+ R ++ L
Sbjct: 475 LG-------VRAEGLVASYADAHGTTFFEAIEHMEQIEGMSTRTTKPLSAFRDMMHELAA 527
Query: 739 ISKLVRREPSISAVITSVANMVPQKYLLE--QRAVVDFDGGKLLNEDNDLRSVLQYLLAD 796
+K +PS VA ++ + +LE QR+ D ++ D S LQ + A+
Sbjct: 528 FAKDHDTKPS-----EVVAEVLAKSGILEELQRSEDPQDASRV-----DNLSQLQSVAAE 577
Query: 797 VTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTI 856
E+ D G + D ++ + D+ VT+ T+
Sbjct: 578 F------------EQNTPDATLAGFLETTALVAD------SDQLPGENEDS-GKVTMMTL 618
Query: 857 HQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILY 916
H +KGLE+ VF+ + P H+ E + + EERRL YV +TRA+++L++
Sbjct: 619 HTAKGLEYPYVFLTGMEQGTFP--HQ---RAMEDTSELAEERRLAYVGITRAKRRLYVTR 673
Query: 917 VMMDANWQL---LQPSRFLKEIPHHL 939
+ A W + PS+FL EIP L
Sbjct: 674 AAVRAQWGQASDMMPSQFLDEIPDEL 699
>gi|184155952|ref|YP_001844292.1| ATP-dependent DNA helicase [Lactobacillus fermentum IFO 3956]
gi|183227296|dbj|BAG27812.1| ATP-dependent DNA helicase [Lactobacillus fermentum IFO 3956]
Length = 756
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 201/738 (27%), Positives = 337/738 (45%), Gaps = 119/738 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ +ND+Q EA PLL++AG GSGK + P +ILA+TFT
Sbjct: 7 LEGMNDKQSEAVL-TTEGPLLVMAGAGSGKTRVLTHRIAYLIEERHVLPWHILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ ++G+A ++ +STFH+ +++ R E+L F I +QR I
Sbjct: 66 AAREMKERVAKLLGEA-GNDVWVSTFHALCVRILRRDIEQLGYNRAFTIADTSEQRTLI- 123
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+ E + I K +L+
Sbjct: 124 --KRICEEQNIDTKKFEPRQLLS------------------------------------- 144
Query: 410 GMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+ AK + + PA F K D + A + E Y L LD+ DLI +++L
Sbjct: 145 AISNAKNAMEDPATFAKNHQRPFDRMVARVYEAYQKELERNQTLDFDDLIMKTIELFKKA 204
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISG 524
PE YQ+ + I VDE+QDT+ QY L+ +LA + I +VGD DQSI+ + GA+++
Sbjct: 205 PETLTYYQNKFHYIHVDEYQDTNDAQYELVHMLAEKYENICVVGDADQSIYGWRGANMNN 264
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+F D+ + + L +NYRST+ I++AA+ +I +N++R KN+ T+N G KI
Sbjct: 265 ILNFEHDYPSAHSVMLEQNYRSTQTILKAANEVIANNLERKD-KNLWTENGAGEKISYYR 323
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
NE + FI+ KI E + Y AILYR +V + F + +P+ +
Sbjct: 324 AQNEHDEAQFIVKKIQEERAKHN---YQYQDFAILYRTNAQSRVIEETFLKSTVPYTMVG 380
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI-----DHIDKIS 698
G FY + +R ++A L + D + RV KR I + + + +
Sbjct: 381 GHRFYDRMEIRDLLAYLTLIVNPLDSMSFERVVNT--------PKRGIGMTSVERLREFA 432
Query: 699 TIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
++AA ++ A R+++ + +++ L+ +K++ IT + +
Sbjct: 433 QESNLPLLAAAQNVQNANAISARTRNKIEEFGQLIAALQDEAKVLS--------ITDLTD 484
Query: 759 MVPQK--YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQ 816
V ++ YL E L +D L+ Q ++ +F S E +
Sbjct: 485 QVLERTGYLAE------------LQKDKTLQG--QTRRENLEEFKSV----TAEYDRQHE 526
Query: 817 DKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
D +G ++ L+ D+++ + + E +VTL T+H +KGLE+ ++F+ E
Sbjct: 527 DDEG-MDHLQKLTDFLAGLALVSDQDDVDEAEPAVTLMTLHAAKGLEFPVIFLIGMEEGV 585
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLK 933
PL +EEERRL YV +TRA+KKL+I M+ + Q +PS F++
Sbjct: 586 FPLSRAMT-----DNKELEEERRLAYVGITRAKKKLYITNAFSRMLYGHIQRNRPSEFVE 640
Query: 934 EIPHHLREVQAEQSVQDQ 951
EI L +Q+E Q +
Sbjct: 641 EITPEL--MQSENQNQGE 656
>gi|227432451|ref|ZP_03914438.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp.
cremoris ATCC 19254]
gi|227351772|gb|EEJ42011.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp.
cremoris ATCC 19254]
Length = 749
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 201/736 (27%), Positives = 335/736 (45%), Gaps = 115/736 (15%)
Query: 237 MPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNI 281
MP E +Q +ND+Q EA PLLI+AG GSGK + P I
Sbjct: 1 MPIE--TLIQGMNDKQSEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAHLVQDKNVYPWRI 57
Query: 282 LAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGH 341
LA+TFT AA EMR+RI +V A+E+ +STFH+ ++++ R E++ F I
Sbjct: 58 LAITFTNKAAREMRERIAQLVDPEIAREIWVSTFHAMAVRILRRDGERIGLARNFTIIDT 117
Query: 342 GQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
QR ++KR+ D+ + + NA
Sbjct: 118 SAQR---------------TLMKRVINDLNLDTNQYDPRTILGTVSNA------------ 150
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
++ M AKA K + +E A + Y LR ++D+ DLI ++ L
Sbjct: 151 ------KNDMLTAKAYAKQAG---NVYEETVAEVYAAYQAELRRAQSVDFDDLIMSTIDL 201
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGA 520
P+V + YQ+ ++ + VDE+QDT+ QY+++ +LA +R + +VGD DQSI+ + GA
Sbjct: 202 FKQAPDVLERYQNQFEYLHVDEYQDTNDAQYTIVNLLAKRSRNLAVVGDADQSIYGWRGA 261
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
+++ +F KD+ + + L +NYRST+ I++AA+++I +N +R K++ T+N G KI
Sbjct: 262 NMNNILNFEKDYPDAHTVLLEQNYRSTQNILDAANAVINNNNERID-KSLWTENGKGDKI 320
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
E + F++ I + A +Y A+LYR + + A + +P+
Sbjct: 321 TYYRAQTERDEANFVLANIQKSRQEKNA---AYSDFAVLYRTNAQSRGIEEALMKANMPY 377
Query: 641 N-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHID 695
+ G FY +K + I++ + D+ + RV E K+ + I+ +
Sbjct: 378 TMVGGHKFYERKEILDIMSYMNLMTNPADNAAFERVV-------NEPKRGIGATSINRLR 430
Query: 696 KISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITS 755
+ S++ A +I A S+L Q +++ L ++L+ +T
Sbjct: 431 DFANRMNLSYMGAIENIELAPEITAKAASKLIQFAEMMHNLRQQTELL--------TVTE 482
Query: 756 VANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKE-EGNV 814
+A + K + Q+ L E ND S Q L ++ +FLS KE +
Sbjct: 483 LAELAMTKSVYRQK----------LAEKNDPES--QGRLENLEEFLSV----TKEFDSKY 526
Query: 815 DQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
+ D ++ + D++S + + +VTL T+H +KGLE+ +VF+ E
Sbjct: 527 NPDDPESVDPM---TDFLSSTALMSDLDDFEEGDGAVTLMTLHAAKGLEFPVVFLVGMEE 583
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLF-------ILYVMMDANWQLLQ 927
PL +EEERRL YV +TRA KKL+ +LY AN +
Sbjct: 584 GIFPLSRAM-----MDDNQLEEERRLAYVGITRAMKKLYLTNAFSRLLYGRTQAN----E 634
Query: 928 PSRFLKEIPHHLREVQ 943
PSRF+ EI L + Q
Sbjct: 635 PSRFIDEISSDLLDTQ 650
>gi|300870871|ref|YP_003785742.1| ATP dependent DNA helicase [Brachyspira pilosicoli 95/1000]
gi|300688570|gb|ADK31241.1| ATP dependent DNA helicase [Brachyspira pilosicoli 95/1000]
Length = 660
Score = 223 bits (569), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 148/444 (33%), Positives = 229/444 (51%), Gaps = 60/444 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASE 293
LN++Q + A ++ P+L +AG GSGK GI PSNILA+TFT AA+E
Sbjct: 2 LNEEQ-KKAVEHINGPMLALAGAGSGKTRVITERIAYLIKNGIDPSNILAVTFTNKAANE 60
Query: 294 MRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVR 353
MR+RI S++ K K+L ISTFHSF +++ + +KL F IY R
Sbjct: 61 MRERIASLL-KEKPKQLVISTFHSFCVRVLKLDIDKLGYKKNFSIYSSSDSRT------- 112
Query: 354 LLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDV 413
L+ N +++ + + L D + + N M ++ ++ E+
Sbjct: 113 LIRN----ILREVKVNTLNYDENLFAWYIDRYKNNLM-----KPNEVVPHDDLEK----- 158
Query: 414 AKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQ 473
I + E Y L+ NA+D++DLI+ ++ L FP+V +YQ
Sbjct: 159 -----------------IAKRVYEVYQNYLKGYNAVDFNDLINLTIDLYINFPDVLDKYQ 201
Query: 474 DSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRKDF 532
+ +K I+VDE+QDT+ QY L +LAS + I +VGDDDQSI++F GAD+S SF ++
Sbjct: 202 ERFKYIMVDEYQDTNLAQYKLTSLLASKYKNIVVVGDDDQSIYAFRGADVSNILSFENEY 261
Query: 533 LNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQC 592
K I L +NYRST+ I+EAA ++I +N +R + K V N G +I C +E +
Sbjct: 262 PEAKIITLNKNYRSTKAILEAAHAVISNNTQR-KAKEVVAVNDEGIPPVIMPCEDERDEA 320
Query: 593 AFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGV-AFYRKK 651
FI + I + A N +Y + AIL+R ++F+ A R R IP+ + G FY +K
Sbjct: 321 QFIAENITQTAINKN---LNYENFAILFRMNSQSRIFEEALRFRGIPYTVVGAFQFYERK 377
Query: 652 VVRAIIAMLRTTLPGCDDGPYRRV 675
++ I+A L + D+ RV
Sbjct: 378 EIKDILAYLNLFVNPEDEVSLLRV 401
>gi|126649601|ref|ZP_01721842.1| PcrA [Bacillus sp. B14905]
gi|126593926|gb|EAZ87849.1| PcrA [Bacillus sp. B14905]
Length = 750
Score = 223 bits (569), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 210/732 (28%), Positives = 328/732 (44%), Gaps = 127/732 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +N +Q E A PLLI+AG GSGK + PS +LA+TFT
Sbjct: 9 LAGMNPEQ-ERAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLIIEKEVYPSKVLAITFTNK 67
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+RI I+G T + +STFHS +++ R + ++L + F I
Sbjct: 68 AAREMRERIDGILGNGTGDSMWVSTFHSMCVRILRRNIDQLGISRNFSI----------- 116
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
L +++ V+K + D F RA ++NA+ Y
Sbjct: 117 ----LDSTDQLSVIKNVMKDENIDPKRFE-PRA---ILNAISAAKNECITADDY------ 162
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
++ + K P E + A + + Y LR +LD+ DLI ++ L PEV
Sbjct: 163 ---ASQMNDKNPYE------QTVARVYKGYEKRLRRNQSLDFDDLIMTTITLFKRVPEVL 213
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ+ ++ I VDE+QDT+ QY L+Q+LA I +VGD DQSI+ + GADI SF
Sbjct: 214 EYYQNKFQYIHVDEYQDTNKSQYLLVQLLAEKFKNICVVGDSDQSIYRWRGADIGNILSF 273
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K I L +NYRST+ I++AA+ +IQ+N R K ++T+N+ G KI + + +NE
Sbjct: 274 EKDYPNAKVIMLEQNYRSTKRILQAANDVIQNNTTRYP-KELRTENAEGEKIALYKAYNE 332
Query: 589 DAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGV 645
+ F++ I L N ++ AILYR +V + + + + I G
Sbjct: 333 QEEAQFVVQTIQQLMEKEN-----RTFDDFAILYRTNAQSRVMEEVLVKSNMVYQIVGGT 387
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSF 705
FY +K ++ ++A LR DD R+ E KR I
Sbjct: 388 KFYDRKEIKDLLAYLRLIANNDDDLSLARIIN--------EPKRSI-------------- 425
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKV------LLTLEMISKLVRREPSISAVITSVANM 759
GA R + Q R + L+ + + K A+I M
Sbjct: 426 --------GATSFEKMARYAIEQDRSIFDAMNDLIFMGLSGKAANSAEQFYAMIKGFTGM 477
Query: 760 VPQKY-----LLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
Q+Y L+EQ V+D G + + + N+ + L ++ +FLS T A EE +
Sbjct: 478 --QEYLSVTELVEQ--VIDKSGYRTMLQ-NEKTIEAESRLENIEEFLSV--TKAFEERSD 530
Query: 815 DQDKKGCIN--VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKA 872
D+ + L A ID + + + ++ ++ L T+H +KGLE+ IVF+
Sbjct: 531 DKSLIAFLTDLALIADIDALDKEDA---------SKGNIILMTMHAAKGLEFPIVFIIGM 581
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM---MDANWQLLQPS 929
E P + +EEERRL+YV +TRA ++L++ + S
Sbjct: 582 EENIFPHSRSLDDQ-----DEMEEERRLMYVGVTRAEERLYLTCAQSRTIFGRSSFNNAS 636
Query: 930 RFLKEIPHHLRE 941
RFL EI + E
Sbjct: 637 RFLGEISEDITE 648
>gi|421227267|ref|ZP_15683974.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2072047]
gi|395595764|gb|EJG55991.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2072047]
Length = 763
Score = 223 bits (569), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 214/731 (29%), Positives = 335/731 (45%), Gaps = 119/731 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTTYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ +E
Sbjct: 266 EKDYPKAKVVLLEENYRSTKTILQAANEVIENNKNR-RPKNLWTQNADGEQIVYYRADDE 324
Query: 589 DAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
+ F+ I L + N + A+LYR + + A + IP+ + G
Sbjct: 325 LDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGT 379
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTI 700
FY +K +R IIA L D+ + R+ E KR ++ I + +
Sbjct: 380 KFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANL 431
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
+ S + A+ +I + I G +S +L E + L SI+ ++ SV
Sbjct: 432 QNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITELVESV---- 482
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
LE+ VD +LN L S + + ++ +FLS + +V +++ G
Sbjct: 483 -----LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTTDVTEEETG 529
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 530 -LDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGMEENVFPLS 585
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLK 933
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 586 R-----ATEDSDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFIN 636
Query: 934 EIPHHLREVQA 944
EI L E Q
Sbjct: 637 EISSDLLEYQG 647
>gi|418202351|ref|ZP_12838781.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA52306]
gi|419455482|ref|ZP_13995442.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae EU-NP04]
gi|421236216|ref|ZP_15692815.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2071004]
gi|353868154|gb|EHE48044.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA52306]
gi|379629939|gb|EHZ94533.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae EU-NP04]
gi|395603183|gb|EJG63323.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2071004]
Length = 763
Score = 223 bits (569), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 219/738 (29%), Positives = 332/738 (44%), Gaps = 133/738 (18%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ +E
Sbjct: 266 EKDYPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRADDE 324
Query: 589 DAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
+ F+ I L + N + A+LYR + + A + IP+ + G
Sbjct: 325 LDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGT 379
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTI 700
FY +K +R IIA L D+ + R+ E KR ++ I + +
Sbjct: 380 KFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANL 431
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
+ S + A+ +I + I G +S +L E + L SI+ ++ SV
Sbjct: 432 QNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITELVESV---- 482
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST------KFTAAKEEGNV 814
LE+ VD +LN L S + + ++ +FLS A+EE +
Sbjct: 483 -----LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVTKNFDDTTDVAEEETGL 530
Query: 815 DQDKKGCINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIHQSKGLEWDIVFVAKAN 873
D+ + +N L D T E S VTL T+H +KGLE+ +VF+
Sbjct: 531 DKLSR-FLNDLALIAD-----------TDSGSQETSEVTLMTLHAAKGLEFPVVFLIGME 578
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL------- 926
E PL E +EEERRL YV +TRA K ILY + +AN +LL
Sbjct: 579 ENVFPLSR-----ATEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYN 629
Query: 927 QPSRFLKEIPHHLREVQA 944
+P+RF+ EI L E Q
Sbjct: 630 RPTRFINEISSDLLEYQG 647
>gi|422223992|ref|ZP_16383815.1| ATP-dependent DNA helicase Rep [Pseudomonas avellanae BPIC 631]
gi|407992768|gb|EKG34324.1| ATP-dependent DNA helicase Rep [Pseudomonas avellanae BPIC 631]
Length = 658
Score = 223 bits (569), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 189/711 (26%), Positives = 318/711 (44%), Gaps = 124/711 (17%)
Query: 260 MSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAASEMRDRIGSIVGK 304
+ PLL++AG GSGK GI I+AMTFT AA EM++R+G+++
Sbjct: 4 VGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREMKERVGTLLKG 63
Query: 305 ATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVRLLENEKILVVK 364
+ LT+STFH+ L + R +L F I+ VK
Sbjct: 64 GEGRGLTVSTFHNLGLNIIRKEHTRLGYKPGFSIFDETD-------------------VK 104
Query: 365 RISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDVAK---ASGKT- 420
+ TD++ Q DG+D K S K
Sbjct: 105 ALMTDIM------------------------------QKEYSGDDGVDEIKNMIGSWKND 134
Query: 421 ---PAEF----RKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQ 473
PAE R ++ A + +Y L++ NA+D+ DLI VKL P+V +++Q
Sbjct: 135 LILPAEALENARNPKEQTAAIVYTHYQRTLKAYNAVDFDDLILVPVKLFQEHPDVLEKWQ 194
Query: 474 DSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKDF 532
+ + ++VDE+QDT+A QY L+++L S N+ T+VGDDDQSI+++ GA + D+
Sbjct: 195 NKVRYLLVDEYQDTNASQYLLVKLLIGSRNQFTVVGDDDQSIYAWRGARPENLMLLKDDY 254
Query: 533 LNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQC 592
+ K + L +NYRST I+ A+ LI +N + K + ++ HG +I + C NEDA+
Sbjct: 255 PSLKVVMLEQNYRSTSRILRCANVLISNNPHAFE-KQLWSEMGHGDEIRVIRCRNEDAEA 313
Query: 593 AFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGV-AFYR 649
+ +I L ++ P Y AILYR K+ + + ++P+ + G +F+
Sbjct: 314 ERVAMEILTLHLRTDRP-----YSDFAILYRGNYQAKLIELKLQHHQVPYRLSGGNSFFG 368
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAA 709
++ V+ ++A R + DD + RV + +E ++ + +T RK S +A
Sbjct: 369 RQEVKDLMAYFRLLVNPDDDNAFLRVIN---VPRREIGSTTLEKLGNYATERKVSMYAAT 425
Query: 710 CDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQ 768
+I G + + +L R + + V A P L +
Sbjct: 426 EEIGLGEHLDSRY-----------------TDRLQRFKRWMDGVRQQCAQNDPIAAL--R 466
Query: 769 RAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAF 828
V+D D L +++ Y +++V F + +++D++G + + +A
Sbjct: 467 SMVMDIDYENWLRQNSSSEKAADYRMSNVW------FLIEALKNTLEKDEEGGMTIEEA- 519
Query: 829 IDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVN 888
I + R+ + + D V + T+H SKGLE+ VF+ E +P
Sbjct: 520 IGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPHRSSI----- 574
Query: 889 EKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEIP 936
+ ++EEERRL YV +TRAR+ L + + + PSRFL E+P
Sbjct: 575 -EADTIEEERRLAYVGITRARQTLAFTFAAKRKQYGEIIDCAPSRFLDELP 624
>gi|421206534|ref|ZP_15663594.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2090008]
gi|421229724|ref|ZP_15686395.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2061376]
gi|395576173|gb|EJG36731.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2090008]
gi|395596132|gb|EJG56355.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2061376]
Length = 763
Score = 223 bits (569), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 209/739 (28%), Positives = 335/739 (45%), Gaps = 135/739 (18%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLMK 121
Query: 350 EAVRLLE------NEKILV--VKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
++ L NE+ ++ + D++
Sbjct: 122 RILKQLNLDPKKWNERTILGTISNAKNDLID----------------------------- 152
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
DVA A A+ + +I A Y LR ++D+ DLI +++L
Sbjct: 153 ----------DVAYA-----AQAGDMYTQIVAQCYTTYQKELRQSESVDFDDLIMLTLRL 197
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGA 520
P+V YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GA
Sbjct: 198 FDQNPDVLTYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGA 257
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
D+ F KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I
Sbjct: 258 DMQNILDFEKDYPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQI 316
Query: 581 IIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKI 638
+ +E + F+ I L + N + A+LYR + + A + I
Sbjct: 317 VYYRADDELDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNI 371
Query: 639 PFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VID 692
P+ + G FY +K +R IIA L D+ + R+ E KR ++
Sbjct: 372 PYTMVGGTKFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGLGTVE 423
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV 752
I + ++ S + A+ +I + I G +S +L E + L SI+ +
Sbjct: 424 KIRDFANLQNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITEL 478
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
+ SV LE+ VD +LN L S + + ++ +FLS +
Sbjct: 479 VESV---------LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTT 521
Query: 813 NVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKA 872
+V +++ G ++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+
Sbjct: 522 DVTEEETG-LDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGM 577
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL------ 926
E PL E +EEERRL YV +TRA K ILY + +AN +LL
Sbjct: 578 EENVFPLSR-----ATEDSDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNY 628
Query: 927 -QPSRFLKEIPHHLREVQA 944
+P+RF+ EI L E Q
Sbjct: 629 NRPTRFINEISSDLLEYQG 647
>gi|417698489|ref|ZP_12347661.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA41317]
gi|419506024|ref|ZP_14045685.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA49194]
gi|332200534|gb|EGJ14606.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA41317]
gi|379607938|gb|EHZ72684.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA49194]
Length = 763
Score = 223 bits (569), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 214/731 (29%), Positives = 335/731 (45%), Gaps = 119/731 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTTYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ +E
Sbjct: 266 EKDYPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRADDE 324
Query: 589 DAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
+ F+ I L + N + A+LYR + + A + IP+ + G
Sbjct: 325 LDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGT 379
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTI 700
FY +K +R IIA L D+ + R+ E KR ++ I + +
Sbjct: 380 KFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANL 431
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
+ S + A+ +I + I G +S +L E + L SI+ ++ SV
Sbjct: 432 QNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITELVESV---- 482
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
LE+ VD +LN L S + + ++ +FLS + +V +++ G
Sbjct: 483 -----LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTTDVTEEETG 529
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 530 -LDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGMEENVFPLS 585
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLK 933
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 586 R-----ATEDSDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFIN 636
Query: 934 EIPHHLREVQA 944
EI L E Q
Sbjct: 637 EISSDLLEYQG 647
>gi|319947280|ref|ZP_08021513.1| ATP-dependent DNA helicase PcrA [Streptococcus australis ATCC
700641]
gi|319746522|gb|EFV98782.1| ATP-dependent DNA helicase PcrA [Streptococcus australis ATCC
700641]
Length = 767
Score = 223 bits (569), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 214/742 (28%), Positives = 340/742 (45%), Gaps = 123/742 (16%)
Query: 237 MPDEY--SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPS 279
M +EY + L +N++Q EA PLLI+AG GSGK ++P
Sbjct: 1 MNEEYEMNPLLNGMNERQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPW 59
Query: 280 NILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIY 339
NILA+TFT AA EM++R + ++ I+TFHS +++ R A+ + F I
Sbjct: 60 NILAITFTNKAAREMKERAYQL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIV 117
Query: 340 GHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFK 399
G+QR ++KRI L D R + ++S+ K
Sbjct: 118 DPGEQR---------------TLMKRI-LKQLNLDPKKWNERT--------ILGTISNAK 153
Query: 400 LCQYNKFERDGMD-VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCS 458
D +D VA A A+ + +I A E Y LR A+D+ DLI +
Sbjct: 154 --------NDLIDEVAYA-----AQAGDMYTQIVAKCYEAYQKELRQSEAVDFDDLIMLT 200
Query: 459 VKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSF 517
++L P+V YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ +
Sbjct: 201 LRLFDQHPDVLTYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGW 260
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GAD+ F KD+ + K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G
Sbjct: 261 RGADMQNILDFEKDYPDAKVVLLEENYRSTKTILQAANDVIKNNRNR-RPKNLWTQNADG 319
Query: 578 SKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERK 637
+I+ ++E + F+ I E + + A+LYR + + A +
Sbjct: 320 EEIVYYRANDEQDEAVFVAKTIEELSREAG---YKHRDFAVLYRTNAQSRTIEEALLKSN 376
Query: 638 IPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VI 691
IP+ + G FY +K +R +IA L D+ + R+ E KR +
Sbjct: 377 IPYTMVGGTKFYSRKEIRDVIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTV 428
Query: 692 DHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISA 751
D I + ++ S + A+ +I + I G ++ +L E + ++ E
Sbjct: 429 DKIRDFAQMQGTSLLDASANIMLSGIKGKAAQAIWDFANLILDLREKLDQMTITE----- 483
Query: 752 VITSVANMVPQKYLLEQRAVVDFDG--GKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAK 809
L+E+ V+D G L N+ N L S Q + ++ +FLS
Sbjct: 484 -------------LVEE--VLDKTGYMTALTNQGN-LES--QARIENIQEFLSVT-KNFD 524
Query: 810 EEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFV 869
E G+ +D+ G ++ L F++ ++ Q + VTL T+H +KGLE+ +VF+
Sbjct: 525 ENGDSVEDESG-VDTLSRFLNDLALIADTDDGAQE---TSEVTLMTLHAAKGLEFPVVFL 580
Query: 870 AKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL--- 926
E PL E +EEERRL YV +TRA K LF + +AN +LL
Sbjct: 581 IGMEENVFPLSR-----AAEDPDELEEERRLAYVGITRAEKVLF----LTNANSRLLFGR 631
Query: 927 ----QPSRFLKEIPHHLREVQA 944
+P+RF+ EI L Q
Sbjct: 632 TSYNRPTRFINEISSDLLTYQG 653
>gi|297564148|ref|YP_003683121.1| ATP-dependent DNA helicase PcrA [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296848597|gb|ADH70615.1| ATP-dependent DNA helicase PcrA [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 781
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 209/743 (28%), Positives = 323/743 (43%), Gaps = 119/743 (16%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFT 287
+ L+ LN Q +A S PLLIVAG GSGK G+ P ILA+TFT
Sbjct: 6 QLLEGLNGPQRDAVTHSGS-PLLIVAGAGSGKTRVLTHRIAHLMAARGVRPGEILAITFT 64
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA+EMR+RI +++G A + TFHS +++ R A +L S F IY
Sbjct: 65 NKAAAEMRERIQALLGVRAANSMWTMTFHSACVRILRREAARLGYPSSFTIYDSA----- 119
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
++ RL++ LV K + D F SF Q + +
Sbjct: 120 --DSARLMQ----LVCKEMDLDPKR--------------------FPPKSFS-AQVSNLK 152
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ +D +G+ E K E + Y L A+D+ DLI +V L FP+
Sbjct: 153 NELVDYDTFAGQAQTEQEKKLAEA----YQLYQRRLHEAGAMDFDDLIMVTVNLFQMFPD 208
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-----------HNRITIVGDDDQSIFS 516
V + Y+ ++ ++VDE+QDT+ QY ++ L + +VGD DQSI++
Sbjct: 209 VAEYYRRRFRHVMVDEYQDTNHAQYVFIRELVGVAEGSDTSVVPPAELCVVGDADQSIYA 268
Query: 517 FNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSH 576
F GA I F +DF + + I L +NYRST+ I+ AA+++I N R KN+ ++
Sbjct: 269 FRGATIRNILEFERDFPDARTILLEQNYRSTQTILSAANAVIDRNEGRPA-KNLWSEQGD 327
Query: 577 GSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRER 636
G I+ NE + AF++ +I + +G + +A+ YR +VF+ F
Sbjct: 328 GPAIVGYVADNEHDEAAFVVGEIDKLTDDG---TLTPSQVAVFYRTNAQSRVFEDVFIRT 384
Query: 637 KIPFNI-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHID 695
+P+ I GV FY +K +R ++A LR D RR+ KR I
Sbjct: 385 GLPYKIVGGVRFYERKEIRDVLAYLRVLANPEDTVSLRRILNV--------PKRGI---- 432
Query: 696 KISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITS 755
+ + ++F A+ +F R+ R+V M ++ V+ + +A++
Sbjct: 433 -------GARAEESIELFAARERISFSRAL----RRVEEIPGMAARSVKAVLNFTALLEE 481
Query: 756 VANMVPQKYLLEQRAVVDFDGGKL--LNEDNDLR--SVLQYL--LADVTDFLSTKFTA-- 807
+ VP+ E V G L L E DL+ S ++ L DV F A
Sbjct: 482 LEQTVPEGTPAEIVEAVLSKTGYLSELAESKDLQDESRVENLEEFVDVAREFEHTFAALL 541
Query: 808 --------AKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQS 859
+ G VD ++ F++ IS D VTL T+H +
Sbjct: 542 EEEPTEDGEEAAGAVDPGAPTLVD----FLERISLVADTDQIPDEDDEGGVVTLMTLHAA 597
Query: 860 KGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMM 919
KGLE+ VF+ + P T +EEERRL YV +TRA++ L++ +
Sbjct: 598 KGLEFPAVFLTGMEDGVFPHTRTLG-----DKTQLEEERRLAYVGLTRAQRLLYVSRAAV 652
Query: 920 DANWQL--LQP-SRFLKEIPHHL 939
+ W P SRFL EIP L
Sbjct: 653 RSAWGTPSYNPASRFLDEIPSSL 675
>gi|221231829|ref|YP_002510981.1| ATP-dependent DNA helicase [Streptococcus pneumoniae ATCC 700669]
gi|415698429|ref|ZP_11457202.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 459-5]
gi|415749483|ref|ZP_11477427.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SV35]
gi|415752168|ref|ZP_11479279.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SV36]
gi|418123359|ref|ZP_12760293.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA44378]
gi|418127946|ref|ZP_12764842.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae NP170]
gi|418137125|ref|ZP_12773967.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA11663]
gi|418178125|ref|ZP_12814709.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA41565]
gi|419473153|ref|ZP_14013004.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA13430]
gi|220674289|emb|CAR68831.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae ATCC
700669]
gi|353797446|gb|EHD77781.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA44378]
gi|353800407|gb|EHD80721.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae NP170]
gi|353844899|gb|EHE24942.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA41565]
gi|353901752|gb|EHE77284.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA11663]
gi|379552660|gb|EHZ17749.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA13430]
gi|381309864|gb|EIC50697.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SV36]
gi|381317081|gb|EIC57817.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 459-5]
gi|381317777|gb|EIC58502.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SV35]
Length = 763
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 212/731 (29%), Positives = 332/731 (45%), Gaps = 119/731 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + + N +
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTIL-----------GTISNAKNNLID-- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ +E
Sbjct: 266 EKDYPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRADDE 324
Query: 589 DAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
+ F+ I L + N + A+LYR + + A + IP+ + G
Sbjct: 325 LDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGT 379
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTI 700
FY +K +R IIA L D+ + R+ E KR ++ I + +
Sbjct: 380 KFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGLGTVEKIRDFANL 431
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
+ S + A+ +I + I G +S +L E + L SI+ ++ SV
Sbjct: 432 QNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITELVESV---- 482
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
LE+ VD +LN L S + + ++ +FLS + +V +++ G
Sbjct: 483 -----LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTTDVTEEETG 529
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
+ + D +T+ + + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 530 LDKLSRFLNDLALIADTDSGSQETSE----VTLMTLHAAKGLEFPVVFLIGMEENVFPLS 585
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLK 933
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 586 R-----ATEDSDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFIN 636
Query: 934 EIPHHLREVQA 944
EI L E Q
Sbjct: 637 EISSDLLEYQG 647
>gi|306827259|ref|ZP_07460546.1| ATP-dependent DNA helicase PcrA [Streptococcus pyogenes ATCC 10782]
gi|304430406|gb|EFM33428.1| ATP-dependent DNA helicase PcrA [Streptococcus pyogenes ATCC 10782]
Length = 772
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 202/725 (27%), Positives = 331/725 (45%), Gaps = 116/725 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q +A PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAQA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ K+ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKERALSL--NPATKDTLIATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+L+ I K +L T S + L +E
Sbjct: 121 --KRILKQLNIDPKKWNERSILGT-------------------ISNAKNDLLDEKGYEAQ 159
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D+ +I A + Y LR ALD+ DLI +++L P+V
Sbjct: 160 AADMYS--------------QIVARCYKAYQEELRRSEALDFDDLIMMTLRLFDANPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 AYYQQRYQYIHVDEYQDTNHAQYQLIKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + K + L NYRST+ I++AA+ +I +N R + K + T N+ G +++ ++E
Sbjct: 266 EKDYPDAKVVLLEENYRSTKKILQAANDVINNNRNR-RPKKLWTQNADGEQLVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASIC-SYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
+ F+ I SN + ++ A+LYR + + A + IP+ + G
Sbjct: 325 RDEAVFVASTI----SNMSQELGKNFKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTK 380
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIRK 702
FY +K +R +IA L D+ + R+ E K+ V +D + + +
Sbjct: 381 FYSRKEIRDLIAYLTIVANPADNISFERIV-------NEPKRGVGPGTLDKLRQFAYESD 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV-ITSVANMVP 761
S + AA ++ + + +G+ +++ + L + + + IT +A
Sbjct: 434 QSLLEAASNLLMSPL----------KGKAAQAIMDLANSLGQLRQDLDQMSITDLA---- 479
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
+ LLE+ +D L N L S Q + ++ +FLS + + ++D+ G
Sbjct: 480 -EALLEKTGYLDS-----LRLQNTLES--QARIENIEEFLSVTKNFDESSASQEEDETGV 531
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
+ + D +T+ + + + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 532 DRLGRFLNDLALIADTDDSQAEAAE----VTLMTLHAAKGLEFPVVFLIGMEEGVFPLSR 587
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKE 934
+E +EEERRL YV +TRA + LF M +AN + L +P+RFLKE
Sbjct: 588 -----ASEDPDELEEERRLAYVGITRAEEVLF----MTNANTRTLFGKSSYNRPTRFLKE 638
Query: 935 IPHHL 939
I L
Sbjct: 639 ISEEL 643
>gi|423238293|ref|ZP_17219409.1| hypothetical protein HMPREF1065_00032 [Bacteroides dorei
CL03T12C01]
gi|392647976|gb|EIY41666.1| hypothetical protein HMPREF1065_00032 [Bacteroides dorei
CL03T12C01]
Length = 796
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 213/742 (28%), Positives = 351/742 (47%), Gaps = 123/742 (16%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFT 287
+ YL+ LN+ Q +A + P L++AG GSGK G +P +ILA+TFT
Sbjct: 2 TNYLEELNESQRDAVLYN-EGPSLVIAGAGSGKTRVLTYKIAYLLEQGYTPWSILALTFT 60
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM++RI VG A+ L + TFHS ++ R A+ + +S F IY +
Sbjct: 61 NKAAREMKERIARQVGD-QARYLWMGTFHSIFSRILRCEAQVIGFSSNFTIYDSSDSKS- 118
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHF--GYMRASLFMMNAMLFFS---MSSFKLCQ 402
++K I +M D + G ++A + L F +S+ +L Q
Sbjct: 119 --------------LIKSIVKEMQLDDKTYKSGLIQARISNAKNHLVFPDAYVSNAELYQ 164
Query: 403 YNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLL 462
Y+ + K PA I Y R +A+D+ DL+ + L
Sbjct: 165 YD-----------LNAKVPAT---------RDIYRQYWERCRQSDAMDFDDLLLYTYMLF 204
Query: 463 STFPEVFQEYQDSWKAIIVDEFQDTSAMQYSL-LQILASHNRITIVGDDDQSIFSFNGAD 521
PE+ ++Y + ++ ++VDE+QDT+ Q+S+ LQ+ H R+ +VGDD QSI+SF GA+
Sbjct: 205 RDHPEICRKYAEQFRYVLVDEYQDTNFAQHSIVLQLTQEHQRVCVVGDDAQSIYSFRGAN 264
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII 581
I F + + K +L +NYRST+ IV AA+SLI+ N ++ + K V ++ + G I
Sbjct: 265 IDNILKFTQLYKGAKLFKLEQNYRSTQTIVCAANSLIEKNSEQIK-KEVFSEKAKGEPIG 323
Query: 582 IKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN 641
+ +++ + + ++I++ S SY AILYR ++F+ A R+R +P+
Sbjct: 324 VFNAYSDVEEGEIVANQIVKLRSR---EHYSYNDFAILYRTNAQSRIFEEALRKRSLPYK 380
Query: 642 IHG-VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH-IDKIST 699
I+G ++FY++K ++ +I+ R + D+ +AF KRV+++ + I
Sbjct: 381 IYGGLSFYQRKEIKDVISYFRLAVNPNDE-------EAF--------KRVLNYPVRGIGD 425
Query: 700 IRKCSFISAACDIFGAKIS-GTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
I AA +S L G + M +KL ++ S
Sbjct: 426 TTLNKVIDAAAQ---HHVSLWMVLEEPLAYGLNI--NKGMHTKL----QGFRELVKSFIV 476
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNE---DNDLRSV-----LQYLLADVTDFLSTKFTAAKE 810
+P+K E A++ G ++NE ND ++ ++ L+ + DF + + +E
Sbjct: 477 EIPKKNAYELGAMIVRQSG-IMNEIYQSNDPENLSRQENIEELINGMHDFCAIR----EE 531
Query: 811 EGNVDQDKKGCINVLKAFIDYISERE--TEHFRTQRHDNENSVTLTTIHQSKGLEWDIVF 868
EGN N+L D++SE T+ + D E +TL TIH +KGLE+ VF
Sbjct: 532 EGNE--------NIL--LTDFLSEVSLLTDQDNEKEEDAEK-ITLMTIHSAKGLEFKNVF 580
Query: 869 VAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ- 927
V E P N +EEERRL YVA+TRA + ++ + + ++
Sbjct: 581 VVGLEENLFPSALSLNSY-----KELEEERRLFYVAITRAEEHCYLSFAKSRFKYGKMEF 635
Query: 928 --PSRFLKEIP-HHLREVQAEQ 946
PSRFLK+I H L+ Q EQ
Sbjct: 636 SSPSRFLKDIDVHFLKLPQEEQ 657
>gi|210608461|ref|ZP_03287837.1| hypothetical protein CLONEX_00016 [Clostridium nexile DSM 1787]
gi|210153037|gb|EEA84043.1| hypothetical protein CLONEX_00016 [Clostridium nexile DSM 1787]
Length = 741
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 150/446 (33%), Positives = 238/446 (53%), Gaps = 58/446 (13%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAA 291
+LN +Q EA PLLI+AG GSGK G++P NILA+TFT AA
Sbjct: 6 TLNKEQREAVY-HTEGPLLILAGAGSGKTRVLTHRIAYLIDEKGVNPWNILAITFTNKAA 64
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEA 351
EMR+R+ IVG + + + +STFHS +++ R H + L + F IY Q+ + +
Sbjct: 65 GEMRERVDQIVGFGS-ESIWVSTFHSTCVRILRRHIDLLGYDTSFTIYDADDQKTLMKDV 123
Query: 352 VRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
+ L+ + + +R N + S + +L ++E +
Sbjct: 124 CKYLQIDTKVYKER----------------------NLLAAISSAKDELITPEEYE---L 158
Query: 412 DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQE 471
+ A GK +KI A + + Y LR+ NALD+ DL+ +V+L T PEV
Sbjct: 159 NAAGDFGK-----QKI-----AKVYKEYEKQLRANNALDFDDLLVKTVQLFQTQPEVLDY 208
Query: 472 YQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDSFRK 530
YQ+ ++ I+VDE+QDT+ +Q+ L++ILA R + +VGDDDQSI+ F GA+I +F
Sbjct: 209 YQERFRYIMVDEYQDTNTVQFELIRILAKKYRNLCVVGDDDQSIYKFRGANIKNILNFEH 268
Query: 531 DFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDA 590
F + K I+L +NYRST I+ AA+++I++N R + K++ T+N G KI + +
Sbjct: 269 VFEDAKVIKLEQNYRSTGNILNAANAVIKNNFGRKE-KSLWTENGEGDKIAFSQFDSGYD 327
Query: 591 QCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVAFYR 649
+ +I+ I EH +NG I +Y A+LYR ++F+ F IP+ I G+ FY
Sbjct: 328 EAEYIVGDIKEHVNNG---IRTYNDHAVLYRTNAQSRMFEEKFVTANIPYKIVGGINFYA 384
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRV 675
+K ++ ++A L+T G DD RR+
Sbjct: 385 RKEIKDLLAYLKTIDNGKDDLAVRRI 410
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 6/97 (6%)
Query: 846 DNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAM 905
++ + V L T+H +KGLE+ V++A + P + ++ T VEEERRL YV +
Sbjct: 547 EDSDYVVLMTLHSAKGLEFPEVYLAGMEDGLFP---SYMTITSDDPTEVEEERRLCYVGI 603
Query: 906 TRARKKLFILYV---MMDANWQLLQPSRFLKEIPHHL 939
TRAR+ L + M+ Q + SRFLKEIP +L
Sbjct: 604 TRARENLTLTCARRRMVRGETQYNKMSRFLKEIPVNL 640
>gi|260552489|ref|ZP_05825865.1| I DNA and RNA helicase [Acinetobacter sp. RUH2624]
gi|424056625|ref|ZP_17794143.1| ATP-dependent DNA helicase Rep [Acinetobacter nosocomialis Ab22222]
gi|425743036|ref|ZP_18861130.1| putative ATP-dependent DNA helicase Rep [Acinetobacter baumannii
WC-487]
gi|445435615|ref|ZP_21440335.1| putative ATP-dependent DNA helicase Rep [Acinetobacter baumannii
OIFC021]
gi|260405296|gb|EEW98792.1| I DNA and RNA helicase [Acinetobacter sp. RUH2624]
gi|407441075|gb|EKF47590.1| ATP-dependent DNA helicase Rep [Acinetobacter nosocomialis Ab22222]
gi|425485187|gb|EKU51585.1| putative ATP-dependent DNA helicase Rep [Acinetobacter baumannii
WC-487]
gi|444755365|gb|ELW79949.1| putative ATP-dependent DNA helicase Rep [Acinetobacter baumannii
OIFC021]
Length = 679
Score = 223 bits (568), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 202/724 (27%), Positives = 337/724 (46%), Gaps = 120/724 (16%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAAS 292
LND+Q E A PLL++AG GSGK I I AMTFT AA
Sbjct: 7 LNDKQ-EEAMKYTQGPLLVLAGAGSGKTSVITRKIAYLVQHCRIPAHRITAMTFTNKAAR 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ ++ + AK L++STFH+F L L R + L + F +I++A
Sbjct: 66 EMKERVTKLLSREEAKGLSVSTFHTFGLNLLRLELKNLPLKANF----------SILDAD 115
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM- 411
KRI D++ D G L A +S +K D +
Sbjct: 116 D---------CKRILMDLMHRDNLSGAESKELI---AKAMKKISDWK--------NDLIL 155
Query: 412 -DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
+ A ++ +TP + + A + + Y LR+ NA+D+ DLI +LL EV
Sbjct: 156 PEQAHSTCETPEDVQ------FAHLYQLYERNLRAYNAVDFDDLIVMPTRLLQENAEVRD 209
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFR 529
++Q+ + ++VDE+QDT+ QY L+++L + T VGDDDQSI+++ GA +
Sbjct: 210 KWQNRVRYLLVDEYQDTNTAQYILVKLLVGVMGQFTAVGDDDQSIYAWRGAKPENMALLK 269
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
+DF N I+L +NYRST I++AA+ +IQ+N K + +D HG I I C N+D
Sbjct: 270 QDFPNLHIIKLEQNYRSTSRILKAANCVIQNNPHIFD-KKLWSDKGHGEVIRIITCRNDD 328
Query: 590 AQCAFIIDKILEHA-SNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAF 647
+ ++ +L H NG ++ A+LYR +V +T R+ +IP+ + G +F
Sbjct: 329 DEAERVVKDLLTHKLMNGK----NWKDYAVLYRGNFQARVLETQLRQMQIPYKLSGGTSF 384
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI--DKISTIRK--- 702
+ + ++ +++ LR + DD + R+ KR I + +K+ +
Sbjct: 385 FARAEIKDVMSYLRLIINPEDDSAFLRIINT--------PKRAIGPVTLEKLGLFAQENN 436
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ D ++S + TQ + + I+ R + V M+ +
Sbjct: 437 LSLLGASSD---QRLSMVLPKKAETQLHEF---ADFIATFTRELLEDDEPVPKVRQMMNE 490
Query: 763 K----YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
Y+ EQ A + KL N +N L + +Q L+ D D+
Sbjct: 491 AGYIDYIREQSATPAQEKSKLDNIEN-LFTSIQNLINRAEDV----------------DE 533
Query: 819 KGCINVLKAFI--DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
K +V++ + D + +++ E ++ + V L T+H +KGLE+ V++ E
Sbjct: 534 KNIESVIRKLVLLDLLEQQQEE-------EDTDKVNLLTLHAAKGLEFPFVYIMGLEEEL 586
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDAN---WQLLQPSRFLK 933
+P H+ + A ++EEERRL+YV +TRAR+ L + N + + PSRFL
Sbjct: 587 LP--HKNSIA----AETIEEERRLMYVGITRARQGLTLTLAEQRKNGGQMKQMTPSRFLD 640
Query: 934 EIPH 937
E+P
Sbjct: 641 ELPQ 644
>gi|312867706|ref|ZP_07727912.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis F0405]
gi|311096769|gb|EFQ55007.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis F0405]
Length = 761
Score = 223 bits (568), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 212/735 (28%), Positives = 334/735 (45%), Gaps = 127/735 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R + ++ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKERAYQL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+L++ + K +L T + NA + D
Sbjct: 121 --KRILKSLNLDPKKWNERTILGT------------ISNA-----------------KND 149
Query: 410 GMD-VAKASGKTPAEFRKIGD---EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+D VA A+ + GD +I A E Y LR A+D+ DLI +++L
Sbjct: 150 LIDEVAYAT--------QAGDMYTQIVAKCYEAYQKELRQSEAVDFDDLIMLTLRLFDQH 201
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
P+V YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+
Sbjct: 202 PDVLTYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQN 261
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
F KD+ + K + L NYRST+ I++AA+ +I++N R + KN+ T N G +I+
Sbjct: 262 ILDFEKDYPDAKVVLLEENYRSTKTILQAANDVIKNNRHR-RPKNLWTQNEDGEEIVYYR 320
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
++E + F+ I E + + A+LYR + + A + IP+ +
Sbjct: 321 ANDEQDEAVFVAKTIEELSREAG---YKHRDFAVLYRTNAQSRTIEEALLKSNIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKIS 698
G FY +K +R +IA L D+ + R+ E KR +D I +
Sbjct: 378 GTKFYSRKEIRDVIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVDKIRDFA 429
Query: 699 TIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
+++ S + A+ +I + I G ++ +L E + +L E
Sbjct: 430 QMQESSLLDASANIMLSGIKGKAAQAIWDFANLILDLRERLDQLTITE------------ 477
Query: 759 MVPQKYLLEQRAVVDFDG--GKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQ 816
L+E+ V+D G L N+ N L S Q + ++ +FLS E G +
Sbjct: 478 ------LVEE--VLDKTGYMTALTNQGN-LES--QARIENIQEFLSVT-KNFDENGETVE 525
Query: 817 DKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
D+ G + + D +T+ + + VTL T+H +KGLE+ +VF+ E
Sbjct: 526 DESGVETLSRFLNDLALIADTDDGAQETSE----VTLMTLHAAKGLEFPVVFLIGMEENV 581
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPS 929
PL E +EEERRL YV +TRA K LF + +AN +LL +P+
Sbjct: 582 FPLSR-----AAEDPDELEEERRLAYVGITRAEKVLF----LTNANSRLLFGRTSYNRPT 632
Query: 930 RFLKEIPHHLREVQA 944
RF+ EI L Q
Sbjct: 633 RFINEISSDLLTYQG 647
>gi|253575957|ref|ZP_04853291.1| ATP-dependent DNA helicase PcrA, partial [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251844751|gb|EES72765.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. oral taxon 786
str. D14]
Length = 661
Score = 223 bits (568), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 218/726 (30%), Positives = 327/726 (45%), Gaps = 120/726 (16%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAAS 292
LN QQ +A PLLI+AG GSGK P ILA+TFT AA
Sbjct: 19 LNPQQRQAVEA-TEGPLLIMAGAGSGKTRVLTHRIAYLIATRKAPPWAILAITFTNKAAR 77
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM+DR+ +VG +++ +STFHS +++ R E++ TS F I
Sbjct: 78 EMQDRVSRLVGGPEGRDIWVSTFHSMCVRILRRDIERIGFTSNFSILD------------ 125
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
STD L+ + N M ++ + KFE +
Sbjct: 126 --------------STDQLSV------------IRNCMKEQNIDT------KKFEPKAVQ 153
Query: 413 VAKASGK----TPAEF-RKIGD---EIGAAILENYNGILRSCNALDYHDLISCSVKLLST 464
A ++ K TP ++ +KIGD I A I Y LR N+LD+ DLI +++L
Sbjct: 154 AAISTAKNELITPQQYEQKIGDYFEGIVAKIYAQYQRQLRQNNSLDFDDLIMKTIELFKA 213
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADIS 523
P+V YQ ++ I VDE+QDT+ QY L ++LA H+RI +VGD DQSI+ + GADIS
Sbjct: 214 APDVLDFYQKKFQYIHVDEYQDTNRAQYMLCRMLADKHHRICVVGDSDQSIYRWRGADIS 273
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
+F KD+ K I L +NYRST I+ AA+ +I HN R + K + TD G KI +
Sbjct: 274 NILNFEKDYPEAKTILLEQNYRSTSTILNAANEVIGHNTGR-KPKKLWTDKGDGDKIKVY 332
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI- 642
++E + F+ +I +G +Y AILYR +V + + IP+ I
Sbjct: 333 RANSEHDEGYFVTTEIHNSVKSGR----NYRDHAILYRTNAQSRVIEEILIKSDIPYQIV 388
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRK 702
G+ FY +K ++ ++A LR DD R+ + ++ + + + R
Sbjct: 389 GGIKFYDRKEIKDLLAYLRVLSNPDDDISLTRIIN---VPKRGIGDTTVAKLADAAAQRG 445
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + I+G R+ L + +MI L + P +S + +
Sbjct: 446 TSIYRVLEVVDDLGIAGR-TRNALVE------FFDMIHGLHQMVPYLSVTELTEKLLEVT 498
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
+Y LE L +N L + + L ++ +FLS T E N D+ +
Sbjct: 499 QYRLE------------LQNENTLEA--RSRLENIDEFLSV--TMEFENNNEDKSLVSFL 542
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
L D S + N+++V L T+H +KGLE+ +VF+ E P
Sbjct: 543 TDLALIADIDSMNDNSD---AEKPNDDAVVLMTMHSAKGLEFPVVFIIGMEEGVFPHSRA 599
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQPSRFLKEI 935
F +EEERRL YV +TRA +KL++ L+ AN PSRFL EI
Sbjct: 600 F-----LDNEELEEERRLAYVGITRAEEKLYLSCAQMRTLFGRTTAN----PPSRFLDEI 650
Query: 936 PHHLRE 941
P L+E
Sbjct: 651 PEELKE 656
>gi|420265522|ref|ZP_14768076.1| ATP-dependent DNA helicase [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|394427927|gb|EJF00543.1| ATP-dependent DNA helicase [Lactobacillus mali KCTC 3596 = DSM
20444]
Length = 744
Score = 223 bits (568), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 210/766 (27%), Positives = 356/766 (46%), Gaps = 134/766 (17%)
Query: 243 KYLQSLNDQQLEAA-CGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTF 286
+ L+ +ND+Q EA C + PLLI+AG GSGK ++P N+LA+TF
Sbjct: 5 RLLKGMNDKQQEAVLCTE--GPLLIIAGAGSGKTRVLTHRVAYLIEEKQVNPWNVLAITF 62
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR 346
T AA+EMR+RIG+++ + A ++ +STFH+ +++ R +K+ F I G +QR
Sbjct: 63 TNKAAAEMRERIGNLLEEG-ANDVWVSTFHALCVRILRRDIDKIGYNRAFTITGTSEQR- 120
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
++K I D+ F RA L ++
Sbjct: 121 --------------TLIKHILADLNIDIKKFD-PRAILSEISN----------------- 148
Query: 407 ERDGMDVAKASGKTPAEFR----KIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLL 462
AK KTPA++R +++ A + Y L + A+D+ DLI + +L
Sbjct: 149 -------AKNDLKTPADYRMNIQGPFEQVVADVYPEYQKQLENNQAVDFDDLIMLTHRLF 201
Query: 463 STFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGAD 521
P+V + YQ ++ I VDE+QDT+ QY L+ +LA NR + +VGD DQSI+ + GA+
Sbjct: 202 KEVPDVLEFYQRKFQYIHVDEYQDTNQAQYELVSLLAKKNRNLCVVGDADQSIYGWRGAN 261
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII 581
+ +F +D+ + ++L +NYRST+ I++AA+S+I++N R + K + T N+ G+KI
Sbjct: 262 VENIMNFEQDYPDTTLVKLEQNYRSTKIILQAANSVIKNNTNR-KAKELWTQNNEGTKIR 320
Query: 582 IKECHNEDAQCAFIIDKILEHA-SNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
N + + +++ I + NG C Y AILYR + + F + IP+
Sbjct: 321 YYRGQNANDEAFYVVRNIQKMMRENG----CHYNDFAILYRTNAQSRTIEETFIKANIPY 376
Query: 641 NIHGV-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHID 695
I G FY +K +R ++A ++ D + R+ E K+ + I+ ++
Sbjct: 377 KIVGAHKFYDRKEIRDVLAYMQLVTNPQDSLSFERIV-------NEPKRGIGSTSIERLN 429
Query: 696 KISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTL-EMISKL--VRREPSISAV 752
+ S + AA + A ISG + L ++I L +R + +++ +
Sbjct: 430 DFAQNMGMSLLDAASNAVLANISG--------KASNALANFADLIKDLHELRDKLNVTEM 481
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST--KFTAAKE 810
+ + K +LE D L N Q L ++ +FLS +F + E
Sbjct: 482 TERILDKSGYKKVLE-------DSKTLEN---------QSRLENLEEFLSVTKQFDDSWE 525
Query: 811 EGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVA 870
+ + D +F+D++++ + + + VTL T+H +KGLE+ IVF+
Sbjct: 526 PEDENSD---------SFVDFLADLALVSDQDSLVEETDEVTLMTLHAAKGLEFPIVFMM 576
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQ 927
E PL +EEERRL YV +TRA +LF+ M+ Q
Sbjct: 577 GMEEGIFPLSRSMMDE-----NELEEERRLAYVGITRAESELFLTNAFSRMLYGRRQNNP 631
Query: 928 PSRFLKEIPHHLREVQAEQSV------QDQHENIPEGTAQFTINLP 967
SRF++EI L + + +Q D ++ P G A+ +P
Sbjct: 632 ASRFIEEIDPELLQAENQQVANTSIRRNDSRKDYPFGQAKTRYKMP 677
>gi|334882588|emb|CCB83623.1| ATP-dependent DNA helicase PcrA [Lactobacillus pentosus MP-10]
gi|339637213|emb|CCC16104.1| ATP-dependent DNA helicase PcrA [Lactobacillus pentosus IG1]
Length = 755
Score = 223 bits (568), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 204/726 (28%), Positives = 334/726 (46%), Gaps = 116/726 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +ND+Q EA D PLLI+AG GSGK G++P N+LA+TFT
Sbjct: 7 LAGMNDKQQEAVL-DTEGPLLIMAGAGSGKTRVLTHRVAYLIEERGVNPWNVLAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+G ++G+ +A+E+ +STFH+ +++ R E++ F I G +QR
Sbjct: 66 AAREMRERVGKLLGE-SAQEVWVSTFHALCVRILRRDIEQIGYNRAFTIAGTSEQR---- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+VKRI T+ +++ F S K +
Sbjct: 121 -----------TLVKRILTEQ---------------NIDSKKFDPRSILSAISNAKNDLQ 154
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
++ K S +P E + A + Y L + A+D+ DLI +++L PE
Sbjct: 155 TPEMYKESAASPFE------SVVADVYLQYQRELAADQAVDFDDLIMLTIRLFKQNPETL 208
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDSF 528
YQ+ + I VDE+QDT+ QY+L+ +LA + + +VGD DQSI+ + GA++ F
Sbjct: 209 AWYQNKFHYIHVDEYQDTNNAQYTLVNLLADKYKNLCVVGDADQSIYGWRGANMENILDF 268
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + L +NYRST+ I+ AA+++I +N R + K + T+N G KI +E
Sbjct: 269 EKDYPQADTVMLEQNYRSTKTILSAANAVINNNSTR-RPKKLWTENESGDKISYYRGQSE 327
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+I KI E A +YG AILYR +V + + + IP+ + G F
Sbjct: 328 SDETHFVIAKIQESMQ---ADNLNYGDFAILYRTNAQSRVMEESLVKANIPYTMVGGNKF 384
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVF---KAFLLLEKEEKKRVI------DHIDKIS 698
Y +K +R +++ L + D + RV K + EK R+ ++ S
Sbjct: 385 YDRKEIRDVLSYLTLVVNDQDSMNFERVVNEPKRGIGQTSVEKLRLFADEAGYSMLEAAS 444
Query: 699 TIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
+ + ISA AK + T ++L R+ L ++ +++ R + A+ + A
Sbjct: 445 NVDMANGISARAKGALAKFAATM--NELRAMREYLSVTDLTQEILNRTGYMKALKDAKAT 502
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST--KFTAAKEEGNVDQ 816
LE +A ++ ++ +FLS +F + + + D
Sbjct: 503 KS-----LEAQARIE----------------------NIEEFLSVTKQFDDSYQPEDEDS 535
Query: 817 DKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
DK F+D++++ + +VTL T+H +KGLE+ +VF+ E
Sbjct: 536 DK---------FVDFLADLALVSDVDNVEEEPQAVTLMTLHAAKGLEFPVVFLIGLEEGI 586
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLK 933
PL +EEERRL YV +TRA KKL++ M+ Q SRF++
Sbjct: 587 FPLSR-----AMMDEDELEEERRLAYVGITRAEKKLYLTNAYSRMLYGRRQNNPASRFVE 641
Query: 934 EIPHHL 939
EI L
Sbjct: 642 EIEPDL 647
>gi|383938951|ref|ZP_09992147.1| ATP-dependent DNA helicase PcrA [Streptococcus pseudopneumoniae
SK674]
gi|418974126|ref|ZP_13522052.1| ATP-dependent DNA helicase PcrA [Streptococcus pseudopneumoniae
ATCC BAA-960]
gi|383345747|gb|EID23844.1| ATP-dependent DNA helicase PcrA [Streptococcus pseudopneumoniae
ATCC BAA-960]
gi|383714148|gb|EID70158.1| ATP-dependent DNA helicase PcrA [Streptococcus pseudopneumoniae
SK674]
Length = 763
Score = 223 bits (568), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 207/729 (28%), Positives = 338/729 (46%), Gaps = 115/729 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R + ++S+ K D
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERT--------ILGTISNAK--------ND 149
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+D + + + +I + A Y LR ++D+ DLI +++L P+V
Sbjct: 150 LIDDVAYAAQAGDMYTQIVSQCYTA----YQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ ++E
Sbjct: 266 EKDYPQAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+ I E G + + A+LYR + + A + IP+ + G F
Sbjct: 325 LDEAVFVAKTIDEL---GRSQNFLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRK 702
Y +K +R IIA L D+ + R+ E KR ++ I + ++
Sbjct: 382 YSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANVQN 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + ++ +I + I G +S +L E + +L SI+ ++ +V
Sbjct: 434 MSMLDSSANIMLSGIKGKAAQSIWDFANMILDLREQLDQL-----SITELVEAV------ 482
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
LE+ VD +LN L S + + ++ +FLS T ++ + +++ +
Sbjct: 483 ---LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSV--TKNFDDTSDGPEEETGL 530
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 531 DKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGMEENVFPLSR- 586
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+ EI
Sbjct: 587 ----AAEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFINEI 638
Query: 936 PHHLREVQA 944
L E Q
Sbjct: 639 SSDLLEYQG 647
>gi|289168033|ref|YP_003446302.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis B6]
gi|288907600|emb|CBJ22437.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis B6]
Length = 763
Score = 223 bits (568), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 206/737 (27%), Positives = 337/737 (45%), Gaps = 131/737 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLMK 121
Query: 350 EAVRLLE------NEKILV--VKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
++ L NE+ ++ + D++
Sbjct: 122 RILKQLNLDPKKWNERTILGTISNAKNDLID----------------------------- 152
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
DVA A A+ + +I A Y LR ++D+ DLI +++L
Sbjct: 153 ----------DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRL 197
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGA 520
P+V YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GA
Sbjct: 198 FDQNPDVLTYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGA 257
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
D+ F KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I
Sbjct: 258 DMQNILDFEKDYPQAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQI 316
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
+ ++E + F+ I E G + + A+LYR + + A + IP+
Sbjct: 317 VYYRANDELDEAVFVARTIDEL---GRSQKFLHKDFAVLYRTNAQSRTIEEALLKSNIPY 373
Query: 641 N-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHI 694
+ G FY +K +R IIA L D+ + R+ E KR ++ I
Sbjct: 374 TMVGGTKFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKI 425
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+ ++ S + A+ +I + I G +S +L E + +L +I+ ++
Sbjct: 426 RDFANMQDMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDQL-----TITELVE 480
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
+V LE+ VD +LN L S + + ++ +FLS T ++ +
Sbjct: 481 AV---------LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSV--TKNFDDTSD 522
Query: 815 DQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
+++ ++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E
Sbjct: 523 GPEEETGLDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGMEE 579
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------Q 927
PL E +EEERRL YV +TRA K ILY + +AN +LL +
Sbjct: 580 NVFPLSR-----AAEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNR 630
Query: 928 PSRFLKEIPHHLREVQA 944
P+RF+ EI L E Q
Sbjct: 631 PTRFINEISSDLLEYQG 647
>gi|227512902|ref|ZP_03942951.1| ATP-dependent DNA helicase PcrA [Lactobacillus buchneri ATCC 11577]
gi|227083902|gb|EEI19214.1| ATP-dependent DNA helicase PcrA [Lactobacillus buchneri ATCC 11577]
Length = 743
Score = 223 bits (568), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 209/727 (28%), Positives = 340/727 (46%), Gaps = 122/727 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ LN Q +A P+LI+AG GSGK + P NILA+TFT
Sbjct: 7 LKGLNKDQKDAVI-HTEGPVLIMAGAGSGKTRVLTHRIAYIIEHNHVMPWNILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+ ++ + + ++ +STFH+ +++ R + ++L F I +QR
Sbjct: 66 AAREMRERVSKLLDE-SGDDVWVSTFHALCVRILRRNIDQLGFNRAFTIADTSEQR---- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+VKR+ ++ F RA L S+S+
Sbjct: 121 -----------TLVKRVLRELNIDPKRFD-PRAVLS--------SISN------------ 148
Query: 410 GMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
AK TP F+ D +I A + E Y LR +LD+ DLI +++L F
Sbjct: 149 ----AKNDLLTPKAFKAQADSDFDQIVADVYERYQAELRQNESLDFDDLIMTTIELFDQF 204
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISG 524
P+V YQD + I VDE+QDT+ QY L+ LA ++ I +VGD DQSI+ + GA++
Sbjct: 205 PDVLSYYQDKFHYIHVDEYQDTNEAQYRLVNTLAKKSKNICVVGDADQSIYGWRGANMQN 264
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
F++D+ + L +NYRST+ +++AA+++I HN+ R KN+ T+N G KI
Sbjct: 265 ILDFKEDYPDAHVTLLEQNYRSTKTVLDAANAVIAHNLNRAD-KNLWTENEQGEKISYYR 323
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E+ + +++ KI E P +YGS AILYR +V + + IP+ +
Sbjct: 324 GQTENDEARYVVAKIQEEMGK-PKR--NYGSFAILYRTNAQSRVIEETLLKANIPYTMVG 380
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH--IDKISTI- 700
G FY +K +R +A L D + RV E KR I ++K+ T
Sbjct: 381 GHKFYDRKEIRDALAYLTLLGNPRDSMSFERVIN--------EPKRGIGETSLEKLRTFA 432
Query: 701 --RKCSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVA 757
S + A+ +I +IS K S + + ++IS + ++ +++ IT +
Sbjct: 433 NDHGWSLLEASKNIDLANEISSRAKNS-------ISMFEQIISDVAKKLDTMT--ITELT 483
Query: 758 NMVPQK--YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVD 815
+ K YL L L++ Q L ++ +F+S T ++ N D
Sbjct: 484 EEILDKSGYL------------STLKSSKSLQA--QTRLENLEEFISV--TQKYDQDNPD 527
Query: 816 QDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANET 875
Q G N+ ++++S+ + + + VTL T+H +KGLE+ +VF+ E
Sbjct: 528 Q--VGQDNL----VNFLSDLALVSDQDDLDEETSEVTLMTMHAAKGLEFPVVFIMGMEEG 581
Query: 876 EIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFL 932
PL A +E + ++EERRL YV +TRA++KL++ M+ Q SRF+
Sbjct: 582 LFPLSR---AAQDE--SELQEERRLAYVGITRAKEKLYLTNAYSRMLYGRRQNNPESRFV 636
Query: 933 KEIPHHL 939
EI L
Sbjct: 637 NEIKPEL 643
>gi|409427097|ref|ZP_11261626.1| ATP-dependent DNA helicase Rep [Pseudomonas sp. HYS]
Length = 669
Score = 223 bits (568), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 185/717 (25%), Positives = 330/717 (46%), Gaps = 107/717 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+AMTFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ K + LT+STFH+ L + R E+L F I+
Sbjct: 60 AAREMKERVGTLLRKGEGRGLTVSTFHNLGLNIIRKEHERLGFKPGFSIFDETD------ 113
Query: 350 EAVRLLENEKILVVKRISTDML----TTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNK 405
VK + TD++ + D ++ + L + +
Sbjct: 114 -------------VKALMTDIMQKEYSGDDGVDEIKNMIGAWKNDLILPPEALE------ 154
Query: 406 FERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+ P E + A + +Y LR+ NA+D+ DLI VKL
Sbjct: 155 -----------KARNPKE------QTAAVVYAHYQRTLRAFNAVDFDDLILLPVKLFQDN 197
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISG 524
P+V +++Q+ + ++VDE+QDT+A QY L+++L + N+ T+VGDDDQSI+++ GA
Sbjct: 198 PDVLEKWQNKVRYLLVDEYQDTNASQYLLVKMLIGTRNQFTVVGDDDQSIYAWRGARPEN 257
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+ D+ + K + L +NYRST I+ A+ LI +N + K + ++ HG +I +
Sbjct: 258 LMLLKDDYPSLKVVMLEQNYRSTSRILRCANVLISNNPHAFE-KQLWSEMGHGDEIRVIR 316
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG 644
C NE+A+ + +IL S + Y AILYR K+ + + ++P+ + G
Sbjct: 317 CKNEEAEAERVAMEIL---SLHLRTDRPYSDFAILYRGNYQAKLIELKLQHHQVPYRLSG 373
Query: 645 V-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
+F+ ++ V+ ++A R + DD Y RV + +E ++ + +T RK
Sbjct: 374 GNSFFGRQEVKDLMAYFRLLVNPDDDNAYLRVIN---VPRREIGSTTLEKLGNYATERKV 430
Query: 704 SFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S +A+ ++ G + + +L + ++ + VR + ++ I ++ +M+
Sbjct: 431 SMYAASEELGLGEHLDSRYT-DRLQRFKRWM-------DKVREQVALEDPIAALRSMIMD 482
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
+D++ N +D + +++V F + +++D+ G +
Sbjct: 483 ---------IDYENWIRTNSSSD--KAADFRMSNVW------FLIEALKNTLEKDEDGGM 525
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ +A I + R+ + + D V + T+H SKGLE+ VF+ E +P
Sbjct: 526 TIEEA-IGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPHRSS 584
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEIP 936
+ ++EEERRL YV +TRAR+ L + + + PSRFL E+P
Sbjct: 585 I------EADTIEEERRLAYVGITRARQTLAFTFAAKRKQYGEIIDCSPSRFLDELP 635
>gi|403251508|ref|ZP_10917845.1| DNA/RNA helicase, superfamily I, partial [actinobacterium SCGC
AAA027-L06]
gi|402915168|gb|EJX36154.1| DNA/RNA helicase, superfamily I, partial [actinobacterium SCGC
AAA027-L06]
Length = 792
Score = 223 bits (568), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 209/739 (28%), Positives = 341/739 (46%), Gaps = 111/739 (15%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTF 286
S L LN QQL AA +PLL+VAG GSGK ++P +LA+TF
Sbjct: 57 SALLDGLNPQQL-AAVKHEGSPLLVVAGAGSGKTRVLTRRIAYLLAQRNVAPYEVLAITF 115
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR 346
T AA EM++R+ +VG AK + +STFHS +++ R A L T+ F IY
Sbjct: 116 TNKAAGEMKERVTELVGD-RAKVMWVSTFHSACVRILRKEASLLGYTNSFTIYDQS---- 170
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
+++RL+ LV+K ++ D+ + A+L + + ++F
Sbjct: 171 ---DSLRLVN----LVMKDLNLDI---KKYAPRAVAALISQAKNELLGPADYLNQSKDQF 220
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
+ E+ A + Y L N++D+ DLI+ +V+++ P
Sbjct: 221 Q----------------------EMVAQVFSIYQRRLTGANSMDFDDLIAKTVEVMQRHP 258
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-------ITIVGDDDQSIFSFNG 519
EV +Y+ +K I+VDE+QDT+ QY L++ L +R + +VGD DQSI++F G
Sbjct: 259 EVRAKYRSRFKHILVDEYQDTNHAQYVLIKELVGSDRDGFAPAELCVVGDADQSIYAFRG 318
Query: 520 ADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSK 579
A+I F D+ N K I L +NYRST+ I+ AA+++I +N R + KN+ + G+
Sbjct: 319 ANIRNILQFEADYPNAKTILLEQNYRSTQNILTAANAVISNNEGRKE-KNLWSQAGAGAM 377
Query: 580 IIIKECHNEDAQCAFIIDKI-----LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFR 634
I +E + F++ +I LE ++ G AI YR +VF+ F
Sbjct: 378 ITGYVAESEHDEADFVVSEIRRLRDLEKSNP--------GDTAIFYRTNAQSRVFEEVFM 429
Query: 635 ERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH 693
IP+ + GV FY +K ++ +A LR + D+ RR+ ++ R ++
Sbjct: 430 RVGIPYKVVGGVRFYERKEIKDFLAYLRVIVNPEDEVSLRRIINT---PKRGIGDRALEL 486
Query: 694 IDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI 753
+D + R +F A CD+ K ++ Q + L+L KL+ ++
Sbjct: 487 LDLHAATRGITFWQALCDV--------EKNPEIAQ--RATLSLVEFVKLIHSLQTLVEAK 536
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
T + V + +LEQ ++ L+E D + ++ + L A E
Sbjct: 537 TRPS--VIAQAVLEQSGLL-----AELSESKDPQDEVR------VENLEELVAVATEYEE 583
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+ D I+ L F++ +S D+ VT+ T+H +KGLE+ VF+
Sbjct: 584 GEVDDGEEIS-LVGFLEDVSLVADADQIPDGEDHGGVVTMMTLHTAKGLEFPTVFLTGME 642
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSR 930
E P G +E ++EERRL YV +TRAR+ LFI ++W SR
Sbjct: 643 EGIFPHSRTL-GDPDE----LQEERRLAYVGLTRARENLFITRAEYRSSWGAPNYNAASR 697
Query: 931 FLKEIPHHLREV-QAEQSV 948
FL EIP + E QA++ +
Sbjct: 698 FLSEIPDSVIEWNQAQEKI 716
>gi|386845841|ref|YP_006263854.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Actinoplanes sp.
SE50/110]
gi|359833345|gb|AEV81786.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Actinoplanes sp.
SE50/110]
Length = 865
Score = 223 bits (568), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 201/729 (27%), Positives = 330/729 (45%), Gaps = 111/729 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ LN Q +A PLLIVAG GSGK + P I+A+TFT
Sbjct: 98 LEGLNGPQRDAVT-HAGGPLLIVAGAGSGKTRVLTHRIAYLLAARDVHPGEIIAITFTNK 156
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ ++G A+ + +STFHS +++ R+ E S F IY RR +
Sbjct: 157 AAGEMKERVAHLIGP-RARLMWVSTFHSACVRILRAEHEHAGLKSTFSIYDADDSRRLMQ 215
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFK--LCQYNKFE 407
R L+ L KR + L +S+ K L +F
Sbjct: 216 MVARELD----LDPKRYTARGLAA--------------------QVSNLKNELVDPEEF- 250
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
KA K P E R + A E Y L+ +ALD+ D+I +V L + P
Sbjct: 251 -------KAKAKGPNE-RAV-----AEAYELYQRRLKEAHALDFDDIIMATVHLFQSHPL 297
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-----RITIVGDDDQSIFSFNGADI 522
V + Y+ ++ ++VDE+QDT+ QY L++ L + + +VGD DQSI++F GA I
Sbjct: 298 VAEAYRRRFRHVLVDEYQDTNVAQYMLIRELVGRDDQDPSELCVVGDADQSIYAFRGATI 357
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
F +D+ + + I L +NYRST+ I+ AA+++I N R + K + +D G +I+
Sbjct: 358 RNILEFERDYPSARTILLEQNYRSTQTILSAANAVIDRNTSR-KPKRLWSDQGAGEQIVG 416
Query: 583 KECHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIP 639
E A+ ++ ID++ + P G +A+ YR +VF+ F +P
Sbjct: 417 YVADTEHAEADWVAREIDRLSDRHEVRP------GDVAVFYRTNNQSRVFEEVFIRVGLP 470
Query: 640 FN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH----I 694
+ + GV FY +K VR +A LR + D RRV K+ + D +
Sbjct: 471 YKVVGGVRFYERKEVRDALAYLRAIVNEDDTVSIRRVLNT-------PKRGIGDRAEACV 523
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+ +S + SF A A T + + ++L L +S E + AV+
Sbjct: 524 EALSNRDRISFGQALRHARTAPGISTRAANSIADFVQILDDLREMSLTEAPEAVLEAVLQ 583
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
+ + L+ + D G++ N LQ L++ ++ T A E+
Sbjct: 584 RSGLLTELEESLDPQ-----DQGRVEN--------LQELVSVAREYTERVETQAGED--- 627
Query: 815 DQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
D + + L F++ ++ + + + D++ VTL T+H +KGLE+ +VF+
Sbjct: 628 --DPEAPVASLAGFLEQVALVADADQIPSDDPDHQGVVTLMTLHTAKGLEFPVVFLTGLE 685
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSR 930
+ P + + + +EEERRL YV +TRAR++L++ + + W Q PSR
Sbjct: 686 DGVFPHMRAMS-----DNSELEEERRLAYVGITRARQRLYLSRAVTRSAWGQPQYNPPSR 740
Query: 931 FLKEIPHHL 939
F E+P L
Sbjct: 741 FTDELPAEL 749
>gi|168494521|ref|ZP_02718664.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
CDC3059-06]
gi|225854583|ref|YP_002736095.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae JJA]
gi|418073876|ref|ZP_12711133.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA11184]
gi|418078580|ref|ZP_12715803.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 4027-06]
gi|418080548|ref|ZP_12717760.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 6735-05]
gi|418089483|ref|ZP_12726640.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA43265]
gi|418098457|ref|ZP_12735556.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 6901-05]
gi|418105165|ref|ZP_12742223.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA44500]
gi|418114078|ref|ZP_12751070.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 5787-06]
gi|418135150|ref|ZP_12772007.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA11426]
gi|418173464|ref|ZP_12810078.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA41277]
gi|418216539|ref|ZP_12843263.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
Netherlands15B-37]
gi|419434211|ref|ZP_13974328.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA40183]
gi|419464301|ref|ZP_14004194.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA04175]
gi|419497271|ref|ZP_14036981.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47522]
gi|183575566|gb|EDT96094.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
CDC3059-06]
gi|225724045|gb|ACO19898.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae JJA]
gi|353747771|gb|EHD28427.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 4027-06]
gi|353750285|gb|EHD30926.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA11184]
gi|353753088|gb|EHD33712.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 6735-05]
gi|353762169|gb|EHD42732.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA43265]
gi|353769817|gb|EHD50333.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 6901-05]
gi|353777230|gb|EHD57703.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA44500]
gi|353787803|gb|EHD68202.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 5787-06]
gi|353840163|gb|EHE20237.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA41277]
gi|353873590|gb|EHE53451.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
Netherlands15B-37]
gi|353902387|gb|EHE77917.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA11426]
gi|379539520|gb|EHZ04699.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA04175]
gi|379575595|gb|EHZ40525.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA40183]
gi|379601264|gb|EHZ66040.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47522]
Length = 763
Score = 223 bits (568), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 213/731 (29%), Positives = 335/731 (45%), Gaps = 119/731 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + + N +
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTIL-----------GTISNAKNNLID-- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ +E
Sbjct: 266 EKDYPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRADDE 324
Query: 589 DAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
+ F+ I L + N + A+LYR + + A + IP+ + G
Sbjct: 325 LDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGT 379
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTI 700
FY +K +R IIA L D+ + R+ E KR ++ I + +
Sbjct: 380 KFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGLGTVEKIRDFANL 431
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
+ S + A+ +I + I G +S +L E + L SI+ ++ SV
Sbjct: 432 QNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITELVESV---- 482
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
LE+ VD +LN L S + + ++ +FLS + +V +++ G
Sbjct: 483 -----LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTTDVTEEETG 529
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 530 -LDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGMEENVFPLS 585
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLK 933
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 586 R-----ATEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFIN 636
Query: 934 EIPHHLREVQA 944
EI L E Q
Sbjct: 637 EISSDLLEYQG 647
>gi|386347107|ref|YP_006045356.1| UvrD/REP helicase [Spirochaeta thermophila DSM 6578]
gi|339412074|gb|AEJ61639.1| UvrD/REP helicase [Spirochaeta thermophila DSM 6578]
Length = 665
Score = 223 bits (568), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 213/726 (29%), Positives = 333/726 (45%), Gaps = 107/726 (14%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG--------------ISPSNILAMTFTTA 289
Y LN Q EA + PLLI+AG GSGK I ILA+TFT
Sbjct: 5 YRAELNSAQYEAVTT-IDGPLLIIAGAGSGKTRVITYRIAYMLDSHIPQKAILALTFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM +R+ ++ GK LT+ TFHSF Q+ R H L F IY
Sbjct: 64 AAREMWERVRTLTGKKLTN-LTVGTFHSFGAQILREHIHLLGYRPTFSIYD--------- 113
Query: 350 EAVRLLENEKILVVKRISTDMLTTD-GHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
+++K L+ + I L D + +R ++ S+ K
Sbjct: 114 -----TQDQKALLKQCIQEVGLNPDLANISTIRNTI-----------SAIK--------- 148
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
G V A + +R + +E Y+ LR+ +A+D+ DLI ++L T PEV
Sbjct: 149 TGRAVWNAENEV---YRAVYEE--------YHAHLRAYHAVDFDDLIVLPIRLFETHPEV 197
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDS 527
Y++ ++ I++DEFQDTS +QY +++LA H + +VGDDDQSI+S+ GA+ F
Sbjct: 198 IASYRERFRYILIDEFQDTSILQYHFIKLLAEEHRNLCVVGDDDQSIYSWRGANYENFAL 257
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F +DF KE++L +NYRS + I+EAA+ LI HN R + K + + + I + +
Sbjct: 258 FERDFPERKEVKLEQNYRSVQTILEAANQLISHNTNRKE-KRLWSGRPGKTAIYLTFPSD 316
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVA 646
E + +I + I + Y I +L R + AF IP+ + G +
Sbjct: 317 EREESEYIAETI---RTVVLKERIPYHEIGVLVRTNSLMTPIEDAFLRHNIPYKLSGGTS 373
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFI 706
F+ +K ++ IIA LR L DD R+ + ++ + + + +T + S
Sbjct: 374 FFERKEIKDIIAYLRVILNPDDDVSLLRIINT---PRRGIGRQTLHMLGEYATEHELSIY 430
Query: 707 SAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLL 766
SA + A+ G + T V L E ++ RR TS+A V + L+
Sbjct: 431 SALTSLLYAQ--GLPPQVARTFDEFVSLIEEFGERISRR--------TSIAETV--RDLV 478
Query: 767 EQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLK 826
++ ++ L+ E D V +Y ++ F + N++ + L
Sbjct: 479 DRIDYFEY----LMQEHRDNEKVARYRYQNLMLFADLIERWENDPDNLNPN-------LG 527
Query: 827 AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGA 886
A++ IS + + D + V L TIH +KGLE+ VF+A + IP A
Sbjct: 528 AYLTRISLITKDELDEE--DTKGKVNLMTIHAAKGLEFAHVFLAGVEDGIIPHAR----A 581
Query: 887 VNEKGTSVEEERRLLYVAMTRARKKLFIL-----YVMMDANWQLLQPSRFLKEIPHHLRE 941
+ E ++EEERRL YVA+TRAR+ L++ VM + Q PS FL+E+P HL E
Sbjct: 582 LEESEANMEEERRLFYVAITRAREALYLTSCRQRRVMREDQEQ--TPSPFLEELPDHLIE 639
Query: 942 VQAEQS 947
+A S
Sbjct: 640 TKAPPS 645
>gi|119356509|ref|YP_911153.1| ATP-dependent DNA helicase PcrA [Chlorobium phaeobacteroides DSM
266]
gi|119353858|gb|ABL64729.1| ATP-dependent DNA helicase PcrA [Chlorobium phaeobacteroides DSM
266]
Length = 734
Score = 223 bits (568), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 222/800 (27%), Positives = 358/800 (44%), Gaps = 134/800 (16%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTF 286
+ +L LND Q +A P++++AG GSGK S NILA+TF
Sbjct: 2 TDFLLDLNDVQRQAVRA-TEGPVMVLAGAGSGKTRVITYRIAWLIKNGYASAKNILALTF 60
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR 346
T AA EMR R+ ++ + +A L I TFHS +L R+ L F I+ +
Sbjct: 61 TNKAAGEMRHRVDVLLQQGSAGGLWIGTFHSIFARLLRNDIHLLGYDRNFSIFDADDSKS 120
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
I +++ L IS D + L + ++ + +SF L
Sbjct: 121 LIRQSMGELN---------ISPDSV-----------PLNTLQGIISRAKNSFIL------ 154
Query: 407 ERDGMDVAKASGKTPAEFRK-IGD---EIGAAILENYNGILRSCNALDYHDLISCSVKLL 462
P EFR+ GD +I A + + Y LR NALD+ DL+ ++L
Sbjct: 155 --------------PEEFRRSAGDYNQQIAAKVYDLYTRKLRENNALDFDDLLIKPLELF 200
Query: 463 STFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGAD 521
P V + QD+++ +++DE+QDT+ QY ++L A H I +VGDD QSI+S+ GAD
Sbjct: 201 REHPMVLEALQDTFRYLLIDEYQDTNKAQYLAAKMLSAKHRNIFVVGDDAQSIYSWRGAD 260
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII 581
IS +F+ D+ + +L NYRST I++AA+S+I++N+++ + K + + S G +
Sbjct: 261 ISNILNFQDDYTDALTFKLVENYRSTGTILQAANSVIRNNLRQIK-KELVSHRSAGDPLT 319
Query: 582 IKECHNEDAQCAFIIDKILEHA-SNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
+ E NE + +KI E+ S + S A+ YR +V + R+ +IP+
Sbjct: 320 LIEARNERHEA----EKIGEYIHSIRIEKGYEFRSFAVFYRTNAQSRVLEDLMRQNRIPY 375
Query: 641 NIHG-VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIST 699
I G V+FY++K ++ +A LR L D R+ + +K I K+
Sbjct: 376 KIFGSVSFYKRKEIKDAVAYLRFLLNDRDSESLLRI------INFPPRKIGETSIGKLRE 429
Query: 700 IRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANM 759
+ I+ I A G F+ S+L K +L +L+ ++ AV+T + ++
Sbjct: 430 FAEAEGITLYEAITRAD-EGQFQ-SRLVNSLKGFSSLIEALRLLAETGTVYAVLTELFSL 487
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
LL++ + L +N LQ LL+ DF + N DQ
Sbjct: 488 TSIPLLLKEENTAE----SLARHEN-----LQELLSMARDF---------SDNNPDQGSL 529
Query: 820 GCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
G D++ + D++N V+L T+H SKGLE+ +VF+ E PL
Sbjct: 530 G---------DFLETISLASNYDESQDSDNYVSLMTVHASKGLEFPVVFITGLEERLFPL 580
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
N E+ +EEERRL YVAMTRA++K+F+ + + Q S F+ EI
Sbjct: 581 ----NCYEPEQ---LEEERRLFYVAMTRAQEKIFLSWAQTRYLYGQPQYCLKSMFISEID 633
Query: 937 HHLREVQAEQSVQDQHEN------IPE---------GTAQFTINLPREENCCETDLV--- 978
+ + ++ + D+ E +PE G PRE E V
Sbjct: 634 SSIVKTESGTVLADRKERQGTRNAVPESGGYRQRPAGAVSAPSQKPRESGLREGSTVHHA 693
Query: 979 ---STDFLNVQLSGAATESM 995
L+VQ GA +++
Sbjct: 694 VFGQGTVLDVQGRGAGQKAL 713
>gi|15900955|ref|NP_345559.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae TIGR4]
gi|111657604|ref|ZP_01408340.1| hypothetical protein SpneT_02001214 [Streptococcus pneumoniae
TIGR4]
gi|421247354|ref|ZP_15703840.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2082170]
gi|14972562|gb|AAK75199.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae TIGR4]
gi|395614175|gb|EJG74196.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2082170]
Length = 763
Score = 223 bits (568), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 209/739 (28%), Positives = 335/739 (45%), Gaps = 135/739 (18%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLMK 121
Query: 350 EAVRLLE------NEKILV--VKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
++ L NE+ ++ + D++
Sbjct: 122 RILKQLNLDPKKWNERTILGTISNAKNDLID----------------------------- 152
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
DVA A A+ + +I A Y LR ++D+ DLI +++L
Sbjct: 153 ----------DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRL 197
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGA 520
P+V YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GA
Sbjct: 198 FDQNPDVLTYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGA 257
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
D+ F KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I
Sbjct: 258 DMQNILDFEKDYPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQI 316
Query: 581 IIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKI 638
+ +E + F+ I L + N + A+LYR + + A + I
Sbjct: 317 VYYRADDELDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNI 371
Query: 639 PFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VID 692
P+ + G FY +K +R IIA L D+ + R+ E KR ++
Sbjct: 372 PYTMVGGTKFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGLGTVE 423
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV 752
I + ++ S + A+ +I + I G +S +L E + L SI+ +
Sbjct: 424 KIRDFANLQNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITEL 478
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
+ SV LE+ VD +LN L S + + ++ +FLS +
Sbjct: 479 VESV---------LEKTGYVD-----ILNSQATLESKAR--VENIEEFLSVT-KNFDDTT 521
Query: 813 NVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKA 872
+V +++ G ++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+
Sbjct: 522 DVTEEETG-LDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGM 577
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL------ 926
E PL E +EEERRL YV +TRA K ILY + +AN +LL
Sbjct: 578 EENVFPLSR-----ATEDSDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNY 628
Query: 927 -QPSRFLKEIPHHLREVQA 944
+P+RF+ EI L E Q
Sbjct: 629 NRPTRFINEISSDLLEYQG 647
>gi|300714779|ref|YP_003739582.1| ATP-dependent DNA helicase rep [Erwinia billingiae Eb661]
gi|299060615|emb|CAX57722.1| ATP-dependent DNA helicase rep [Erwinia billingiae Eb661]
Length = 673
Score = 223 bits (567), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 196/726 (26%), Positives = 347/726 (47%), Gaps = 104/726 (14%)
Query: 260 MSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAASEMRDRIGSIVGK 304
++ P L++AG GSGK G +I A+TFT A+ EM++R+ +G+
Sbjct: 14 VTGPCLVLAGAGSGKTRVITNKIAHLIRECGYQARHIAAVTFTNKASREMKERVAQTLGR 73
Query: 305 ATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV--RLLENEKILV 362
A+ L ISTFH+ L++ + L S F ++ Q + A+++ + LEN+K L+
Sbjct: 74 KEARGLMISTFHTLGLEIIKREYAALGMKSNFSLFDD-QDQLALLKDLTEEWLENDKTLL 132
Query: 363 VKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDVAKASGKTPA 422
+ IST +S++K D MD ++A+ +
Sbjct: 133 QQLIST--------------------------ISNWK--------NDLMDPSRAAAGAVS 158
Query: 423 EFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVD 482
E D++ A Y+ L+SCN LD+ DLI L EV + +Q + ++VD
Sbjct: 159 E----RDKLFAHCYGLYDKHLKSCNVLDFDDLILLPTLLFQRNQEVLERWQQRIRYLLVD 214
Query: 483 EFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLT 541
E+QDT+ QY L+++L + R T+VGDDDQSI+S+ GA +DF + I+L
Sbjct: 215 EYQDTNTSQYELVKLLVGARARFTVVGDDDQSIYSWRGARPQNLVLLNEDFPALQVIKLE 274
Query: 542 RNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILE 601
+NYRST I++AA+ LI +N + K + ++ +G+++ + +NED + I +++
Sbjct: 275 QNYRSTERILKAANILIANNPHVFE-KRLFSELGYGAELKVVTANNEDHEAERTIGELIA 333
Query: 602 HASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRKKVVRAIIAML 660
H + Y AILYR +VF+ + +IP+ I G +F+ + ++ ++A L
Sbjct: 334 HHF---INKTQYKDYAILYRGNHQSRVFEKMLMQNRIPYRISGGTSFFSRPEIKDLLAYL 390
Query: 661 RTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKISGT 720
R DD + R+ +E + + + + R S +A+ D+ + T
Sbjct: 391 RVLTNPNDDSAFMRIVNT---PRREIGSATLQKLGEWAMQRNKSLFTASFDM---GLEQT 444
Query: 721 FKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLL 780
L ++ L+ +++L REP ++AV + + + +L E A ++
Sbjct: 445 LSGRGLESLQRFTFWLQEVAQLAEREP-VAAVRDLIRGIDYESWLFETSASPKAAEMRMK 503
Query: 781 NEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFI--DYISERETE 838
N + ++ Q++ T+ L EG+ + V+ F D + E+E
Sbjct: 504 N----VNTLFQWM----TEML---------EGSDIDEAMTLTQVVTRFTLRDMMERGESE 546
Query: 839 HFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEER 898
++ + V L T+H SKGLE+ V++ E +P H+ +++E +VEEER
Sbjct: 547 -------EDMDQVQLMTLHASKGLEFPYVYLVGMEEGLLP--HQ--SSIDE--NNVEEER 593
Query: 899 RLLYVAMTRARKKL-FILYVMMDANWQLL--QPSRFLKEIPHHLREVQAEQSVQDQHENI 955
RL YV +TRARK+L F L + + +PSRFL E+P + ++E+ + E +
Sbjct: 594 RLAYVGITRARKELTFTLCRERRQYGETIRPEPSRFLMELPQDDLKWESERKIVSAEERM 653
Query: 956 PEGTAQ 961
G ++
Sbjct: 654 QTGQSR 659
>gi|342163708|ref|YP_004768347.1| ATP-dependent DNA helicase PcrA [Streptococcus pseudopneumoniae
IS7493]
gi|341933590|gb|AEL10487.1| ATP-dependent DNA helicase PcrA [Streptococcus pseudopneumoniae
IS7493]
Length = 763
Score = 223 bits (567), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 213/731 (29%), Positives = 336/731 (45%), Gaps = 119/731 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R+ L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERSILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ +E
Sbjct: 266 EKDYPQAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRADDE 324
Query: 589 DAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
+ F+ I L + N + A+LYR + + A + IP+ + G
Sbjct: 325 LDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGT 379
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTI 700
FY +K +R IIA L D+ + R+ E KR ++ I + +
Sbjct: 380 KFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANM 431
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
+ S + A+ +I + I G +S +L E + L SI+ ++ SV
Sbjct: 432 QNMSMLDASANIMLSGIKGKVAQSIWDFANMMLDLREQLDHL-----SITELVESV---- 482
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
LE+ VD +LN L S + + ++ +FLS T ++ + +++
Sbjct: 483 -----LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSV--TKNFDDTSDGPEEET 528
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 529 GLDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGMEENVFPLS 585
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLK 933
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 586 R-----AAEDQDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFIN 636
Query: 934 EIPHHLREVQA 944
EI L E Q
Sbjct: 637 EISSDLLEYQG 647
>gi|149006240|ref|ZP_01829952.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
SP18-BS74]
gi|307127381|ref|YP_003879412.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 670-6B]
gi|417676846|ref|ZP_12326256.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA17545]
gi|418096191|ref|ZP_12733306.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA16531]
gi|418132917|ref|ZP_12769789.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA11304]
gi|418155095|ref|ZP_12791826.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA16242]
gi|418225496|ref|ZP_12852125.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae NP112]
gi|419466512|ref|ZP_14006395.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA05248]
gi|419512464|ref|ZP_14052098.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA05578]
gi|419516733|ref|ZP_14056351.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA02506]
gi|421283260|ref|ZP_15734047.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA04216]
gi|147762017|gb|EDK68979.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
SP18-BS74]
gi|306484443|gb|ADM91312.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 670-6B]
gi|332075042|gb|EGI85513.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA17545]
gi|353771178|gb|EHD51689.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA16531]
gi|353805095|gb|EHD85371.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA11304]
gi|353823387|gb|EHE03562.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA16242]
gi|353882804|gb|EHE62615.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae NP112]
gi|379544635|gb|EHZ09779.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA05248]
gi|379636934|gb|EIA01492.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA05578]
gi|379640736|gb|EIA05275.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA02506]
gi|395881223|gb|EJG92272.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA04216]
Length = 763
Score = 223 bits (567), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 214/731 (29%), Positives = 335/731 (45%), Gaps = 119/731 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTTYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ +E
Sbjct: 266 EKDYPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRADDE 324
Query: 589 DAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
+ F+ I L + N + A+LYR + + A + IP+ + G
Sbjct: 325 LDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGT 379
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTI 700
FY +K +R IIA L D+ + R+ E KR ++ I + +
Sbjct: 380 KFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANL 431
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
+ S + A+ +I + I G +S +L E + L SI+ ++ SV
Sbjct: 432 QNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITELVESV---- 482
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
LE+ VD +LN L S + + ++ +FLS + +V +++ G
Sbjct: 483 -----LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTTDVTEEETG 529
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 530 -LDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGMEENVFPLS 585
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLK 933
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 586 R-----ATEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFIN 636
Query: 934 EIPHHLREVQA 944
EI L E Q
Sbjct: 637 EISSDLLEYQG 647
>gi|357011546|ref|ZP_09076545.1| PcrA, partial [Paenibacillus elgii B69]
Length = 679
Score = 223 bits (567), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 226/743 (30%), Positives = 334/743 (44%), Gaps = 134/743 (18%)
Query: 236 NMPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSN 280
N P + K +Q LN QQ A PLLI+AG GSGK +P +
Sbjct: 3 NEPIDILKAIQKLNPQQ-RRAVETTDGPLLIMAGAGSGKTRVLTHRIAYLIGTRKAAPWS 61
Query: 281 ILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYG 340
ILA+TFT AA EM++R+ ++VG +++ +STFHS +++ R ++ TS F I
Sbjct: 62 ILAITFTNKAAREMQERVSALVG-PQGQDIWVSTFHSMCVRILRRDISRIGFTSNFTILD 120
Query: 341 HGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKL 400
G Q + V+K N M ++ S
Sbjct: 121 SGDQ---------------LSVIK-----------------------NCMKEMNIDS--- 139
Query: 401 CQYNKFERDGMDVAKASGK----TPAEF-RKIGD---EIGAAILENYNGILRSCNALDYH 452
KFE + A ++ K TP +F RKIGD I A + +Y L++ N+LD+
Sbjct: 140 ---KKFEPKAVQAAISNAKNELLTPEKFERKIGDYFDGIVAKVYSSYQRKLKANNSLDFD 196
Query: 453 DLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDD 511
DLI +++L PEV YQ+ ++ + VDE+QDT+ QY L ++LA + RI +VGD D
Sbjct: 197 DLIMTTIELFQQVPEVLDFYQNKFQYLHVDEYQDTNRAQYMLCRMLADKYKRICVVGDSD 256
Query: 512 QSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQ 571
QSI+ + GADIS F KD+ N I L +NYRST I+ AA+ +I +N R + KN+
Sbjct: 257 QSIYRWRGADISNILDFEKDYPNATTILLEQNYRSTSNILNAANKVIANNTGR-KPKNLW 315
Query: 572 TDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQT 631
TD G KI + + +E + FI +I ++ G + AILYR +V +
Sbjct: 316 TDKGDGQKIRLYQADSEHEEGYFITGEIRKNVDKGR----RFSDHAILYRTNAQSRVVEE 371
Query: 632 AFRERKIPFNI-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV 690
+ IP+ I GV FY +K ++ I+A LR DD + R+ KR
Sbjct: 372 ILIKSDIPYQIVGGVKFYDRKEIKDILAYLRLISNPDDDISFARIVNV--------PKRG 423
Query: 691 IDHIDKISTIRKCSFISAACDIFGAKISGTFKR-SQLTQGRKVLLTL----EMISKLVRR 745
I +T+ + + AA FG + + + G K L +MI L R
Sbjct: 424 IGD----TTVER---LGAAAGQFGVSMFAMLENVDSMEIGAKARNALADFRDMIENLYRM 476
Query: 746 EPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKF 805
+S V M+ E+ L +N + S Q L ++ +FLS
Sbjct: 477 VDYLS-VTELTEKMLEMSGYREE-----------LKRENTIES--QARLENIDEFLSV-- 520
Query: 806 TAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWD 865
T E+ N D+ + L D S + Q V L T+H +KGLE+
Sbjct: 521 TMDFEKRNEDKSLVSFLTDLALIADIDSMNQDPEAGKQ------GVVLMTMHSAKGLEFP 574
Query: 866 IVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVM 918
+VF+ E P +EEERRL YV +TRA ++LF+ L+
Sbjct: 575 VVFIMGLEEGVFPHSRAL-----MDNEELEEERRLAYVGITRAEEELFLTCARMRTLFGR 629
Query: 919 MDANWQLLQPSRFLKEIPHHLRE 941
AN PSRFL+E+P L E
Sbjct: 630 TTAN----APSRFLQELPQELLE 648
>gi|325971006|ref|YP_004247197.1| UvrD/REP helicase [Sphaerochaeta globus str. Buddy]
gi|324026244|gb|ADY13003.1| UvrD/REP helicase [Sphaerochaeta globus str. Buddy]
Length = 672
Score = 223 bits (567), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 215/735 (29%), Positives = 332/735 (45%), Gaps = 117/735 (15%)
Query: 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAA 291
+ LNDQQ +AA + PLL++AG GSGK GI +ILA+TFT AA
Sbjct: 7 KELNDQQCKAAAT-LYGPLLVIAGAGSGKTRMLTYRIANMLQNGIKEESILALTFTNKAA 65
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEA 351
EM +RI S+ K+LT +TFHSF + + + + + L + F IY
Sbjct: 66 KEMGERIRSLT-NLKLKKLTTTTFHSFGMGVLKQYIQYLGFKNNFTIYD----------- 113
Query: 352 VRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
N+++ ++K + + L + + +F L + + D
Sbjct: 114 ----TNDRMALIKEVIQN---------------------LDYVVETFDLYELSSLFSDIK 148
Query: 412 DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQE 471
K G ++ KI + + Y L++ NALD+ DLI + L PEV +
Sbjct: 149 TKRKVFGANASD--KIKN-----LYSEYEKHLKAYNALDFDDLIMKPLDLFEKRPEVLEA 201
Query: 472 YQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDSFRK 530
+ + I+VDEFQDTS QY ++++LA +R + +VGDDDQSI+S+ GA+ F +
Sbjct: 202 LRSRYTHILVDEFQDTSLSQYRMVELLAQESRNLCVVGDDDQSIYSWRGANYENLVMFER 261
Query: 531 DFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDA 590
DF E++L RNYRST I+EAA+SLI +N R + K + TD+ GS I + N++
Sbjct: 262 DFPERLEVKLERNYRSTGTILEAANSLIVNNQVRKE-KKLWTDSGKGSSIRLIHPANDED 320
Query: 591 QCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVAFYR 649
+ + I D+IL +G +L R +T F ER IP + G +F+
Sbjct: 321 EASVIADEILMIHKKEDRPFSDFG---VLVRTNGLIDSLETKFTERGIPSQVTGGQSFFD 377
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAA 709
+K +R II+ L+ DD RV + + ++ + K++ CS SA
Sbjct: 378 RKEIRDIISYLKVIANQDDDINLLRVINT---PRRGIGRTTLEKMRKVADDHHCSLYSAL 434
Query: 710 CDIFGAKISGTFKRS-QLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQ 768
+ G K Q T R E +L + V+ ++ + K LE
Sbjct: 435 T-LMSVATDGQIKEGMQKTLKRFADFIEEYHHQLFETRTQRNMVLRTLIQEIGYKAYLEA 493
Query: 769 RAVVDFDGGKLLNEDNDLRSVLQYLLADVT---DFLSTKFTAAKEEGNVDQDKKGCINVL 825
E D +V+ Y + + D L A+ E N + N
Sbjct: 494 -------------EHPDNENVVAYKMKGINMLCDML------ARWERNPE-------NAK 527
Query: 826 KAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNG 885
+ DY++ + ++ + L TIH SKGLE+D V++A + IP
Sbjct: 528 ASIFDYLNRISLAGKESTEQEDAGKIALMTIHASKGLEFDTVYLAGVEDQYIPHAR---- 583
Query: 886 AVNEKGTSVEEERRLLYVAMTRARKKLFILYVMM-----DANWQLLQPSRFLKEIPHHL- 939
A+ E +++EERRL YVA+TRAR+ L I D L PSRFL+EIP L
Sbjct: 584 AIEENPANIDEERRLFYVAITRARRSLIISTCEKRKKGHDEVTSL--PSRFLEEIPKALF 641
Query: 940 ------REVQAEQSV 948
+E+ +EQ V
Sbjct: 642 DEEDPAKELSSEQVV 656
>gi|292486654|ref|YP_003529524.1| ATP-dependent DNA helicase RepA [Erwinia amylovora CFBP1430]
gi|292897891|ref|YP_003537260.1| ATP-dependent DNA helicase [Erwinia amylovora ATCC 49946]
gi|428783580|ref|ZP_19001075.1| ATP-dependent DNA helicase RepA [Erwinia amylovora ACW56400]
gi|291197739|emb|CBJ44834.1| ATP-dependent DNA helicase [Erwinia amylovora ATCC 49946]
gi|291552071|emb|CBA19108.1| ATP-dependent DNA helicase RepA [Erwinia amylovora CFBP1430]
gi|312170720|emb|CBX78982.1| ATP-dependent DNA helicase RepA [Erwinia amylovora ATCC BAA-2158]
gi|426277866|gb|EKV55589.1| ATP-dependent DNA helicase RepA [Erwinia amylovora ACW56400]
Length = 672
Score = 223 bits (567), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 195/725 (26%), Positives = 350/725 (48%), Gaps = 102/725 (14%)
Query: 260 MSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAASEMRDRIGSIVGK 304
++ P L++AG GSGK G P +I A+TFT A+ EM++R+ +G+
Sbjct: 14 VTGPCLVLAGAGSGKTRVITNKIAHLIRECGYQPRHIAAVTFTNKASREMKERVAQTLGR 73
Query: 305 ATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV--RLLENEKILV 362
A+ L ISTFH+ L++ + L S F ++ Q + A+++ + + LEN+K L+
Sbjct: 74 KEARGLMISTFHTLGLEIIKREYAALGMKSNFSLFDD-QDQLALLKDLTEQWLENDKNLL 132
Query: 363 VKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDVAKASGKTPA 422
+ +ST +S++K D MD ++A+ +
Sbjct: 133 QQLVST--------------------------ISNWK--------NDLMDPSRAAAGALS 158
Query: 423 EFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVD 482
E D + A Y+ L+SCN LD+ DLI L EV + +Q + ++VD
Sbjct: 159 E----RDRLFAHCYALYDKHLKSCNVLDFDDLILLPTLLFQRNQEVRERWQQRIRYLLVD 214
Query: 483 EFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLT 541
E+QDT+ QY L+++L + R T+VGDDDQSI+S+ GA ++DF + I+L
Sbjct: 215 EYQDTNTSQYELVKLLVGTRARFTVVGDDDQSIYSWRGARPQNLVLLQQDFPALQVIKLE 274
Query: 542 RNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILE 601
+NYRS+ I++AA+ LI +N + K + ++ +G+++ + ++ED + +I +++
Sbjct: 275 QNYRSSGRILKAANILIANNPHVFE-KRLFSELGYGAELKVVTANHEDHEAERVIGELIA 333
Query: 602 HASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRKKVVRAIIAML 660
H + Y AILYR +VF+ + +IP+ I G +F+ + ++ ++A L
Sbjct: 334 HHF---INKTQYKDYAILYRGNHQSRVFEKLLMQNRIPYRISGGTSFFSRPEIKDLLAYL 390
Query: 661 RTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDI-FGAKISG 719
R DD + R+ +E + + + + R S +A+ D+ G ++G
Sbjct: 391 RVLTNADDDSAFMRIVNT---PRREIGSATLQKLGEWAMQRNKSLFTASFDVGLGQTLTG 447
Query: 720 TFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKL 779
L ++ L+ I++L REP ++AV + + + +L E A ++
Sbjct: 448 ----RGLESLQRFTHWLQDIARLAEREP-VAAVRDLIRGIDYESWLFETSASPKAAEMRM 502
Query: 780 LNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEH 839
N + ++ Q++ T E ++D+ L + + R+
Sbjct: 503 KN----VNTLFQWM------------TEMLEGSDIDEPM-----TLTQVVTRFTLRDMME 541
Query: 840 FRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERR 899
R + + + V L T+H SKGLE+ VF+ E +P H+ +++E +VEEERR
Sbjct: 542 -RGESDEESDQVQLMTLHASKGLEFPYVFLVGMEEGLLP--HQ--SSIDE--NNVEEERR 594
Query: 900 LLYVAMTRARKKL-FILYVMMDANWQLL--QPSRFLKEIPHHLREVQAEQSVQDQHENIP 956
L YV +TRA+K+L F L +L+ +PSRFL E+P + ++E+ V E +
Sbjct: 595 LAYVGITRAQKELTFTLCRERRQYGELVRPEPSRFLLELPQDDLQWESERKVVSAEERMQ 654
Query: 957 EGTAQ 961
G ++
Sbjct: 655 TGQSR 659
>gi|225858900|ref|YP_002740410.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 70585]
gi|225721717|gb|ACO17571.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 70585]
Length = 763
Score = 223 bits (567), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 218/738 (29%), Positives = 331/738 (44%), Gaps = 133/738 (18%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ +E
Sbjct: 266 EKDYPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRADDE 324
Query: 589 DAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
+ F+ I L + N + A+LYR + + A + IP+ + G
Sbjct: 325 LDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGT 379
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTI 700
FY +K +R IIA L D+ + R+ E KR ++ I + +
Sbjct: 380 KFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGLGTVEKIRDFANL 431
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
+ S + A+ +I + I G +S +L E + L SI+ ++ SV
Sbjct: 432 QNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITELVESV---- 482
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST------KFTAAKEEGNV 814
LE+ +D +LN L S + + ++ +FLS KEE +
Sbjct: 483 -----LEKTGYID-----ILNAQATLESKAR--VENIEEFLSVTKNFDDTTDVTKEETGL 530
Query: 815 DQDKKGCINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIHQSKGLEWDIVFVAKAN 873
D+ + +N L D T E S VTL T+H +KGLE+ +VF+
Sbjct: 531 DKLSR-FLNDLALIAD-----------TDSGSQETSEVTLMTLHAAKGLEFPVVFLIGME 578
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL------- 926
E PL E +EEERRL YV +TRA K ILY + +AN +LL
Sbjct: 579 ENVFPLSR-----ATEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYN 629
Query: 927 QPSRFLKEIPHHLREVQA 944
+P+RF+ EI L E Q
Sbjct: 630 RPTRFINEISSDLLEYQG 647
>gi|169796934|ref|YP_001714727.1| ATP-dependent DNA helicase [Acinetobacter baumannii AYE]
gi|184157156|ref|YP_001845495.1| superfamily I DNA/RNA helicase [Acinetobacter baumannii ACICU]
gi|213156663|ref|YP_002318324.1| ATP-dependent DNA helicase [Acinetobacter baumannii AB0057]
gi|215484396|ref|YP_002326627.1| ATP-dependent DNA helicase rep [Acinetobacter baumannii AB307-0294]
gi|239503180|ref|ZP_04662490.1| ATP-dependent DNA helicase rep [Acinetobacter baumannii AB900]
gi|260555776|ref|ZP_05827996.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii ATCC 19606
= CIP 70.34]
gi|301348256|ref|ZP_07228997.1| ATP-dependent DNA helicase rep [Acinetobacter baumannii AB056]
gi|301512392|ref|ZP_07237629.1| ATP-dependent DNA helicase rep [Acinetobacter baumannii AB058]
gi|301597490|ref|ZP_07242498.1| ATP-dependent DNA helicase rep [Acinetobacter baumannii AB059]
gi|332853741|ref|ZP_08434953.1| putative ATP-dependent DNA helicase Rep [Acinetobacter baumannii
6013150]
gi|332871139|ref|ZP_08439737.1| putative ATP-dependent DNA helicase Rep [Acinetobacter baumannii
6013113]
gi|384130833|ref|YP_005513445.1| ATP-dependent DNA helicase [Acinetobacter baumannii 1656-2]
gi|384142122|ref|YP_005524832.1| ATP-dependent DNA helicase [Acinetobacter baumannii MDR-ZJ06]
gi|385236422|ref|YP_005797761.1| superfamily I DNA/RNA helicase [Acinetobacter baumannii
TCDC-AB0715]
gi|387124930|ref|YP_006290812.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii MDR-TJ]
gi|403673879|ref|ZP_10936161.1| ATP-dependent DNA helicase [Acinetobacter sp. NCTC 10304]
gi|407931761|ref|YP_006847404.1| ATP-dependent DNA helicase [Acinetobacter baumannii TYTH-1]
gi|416146306|ref|ZP_11601080.1| superfamily I DNA/RNA helicase [Acinetobacter baumannii AB210]
gi|417544449|ref|ZP_12195535.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC032]
gi|417554649|ref|ZP_12205718.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii Naval-81]
gi|417560027|ref|ZP_12210906.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC137]
gi|417565592|ref|ZP_12216466.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC143]
gi|417571305|ref|ZP_12222162.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC189]
gi|417571968|ref|ZP_12222822.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii Canada
BC-5]
gi|417576159|ref|ZP_12227004.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii Naval-17]
gi|417871826|ref|ZP_12516750.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii ABNIH1]
gi|417872556|ref|ZP_12517454.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii ABNIH2]
gi|417876962|ref|ZP_12521704.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii ABNIH3]
gi|417883036|ref|ZP_12527304.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii ABNIH4]
gi|421201512|ref|ZP_15658671.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC109]
gi|421202163|ref|ZP_15659314.1| ATP-dependent DNA helicase [Acinetobacter baumannii AC12]
gi|421456545|ref|ZP_15905887.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii IS-123]
gi|421535731|ref|ZP_15981990.1| ATP-dependent DNA helicase [Acinetobacter baumannii AC30]
gi|421619944|ref|ZP_16060890.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC074]
gi|421627339|ref|ZP_16068149.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC098]
gi|421631050|ref|ZP_16071739.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC180]
gi|421635393|ref|ZP_16075995.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii Naval-13]
gi|421643449|ref|ZP_16083943.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii IS-235]
gi|421646427|ref|ZP_16086879.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii IS-251]
gi|421651331|ref|ZP_16091700.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC0162]
gi|421656532|ref|ZP_16096837.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii Naval-72]
gi|421658633|ref|ZP_16098864.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii Naval-83]
gi|421661316|ref|ZP_16101492.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC110]
gi|421666951|ref|ZP_16107033.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC087]
gi|421670785|ref|ZP_16110769.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC099]
gi|421674982|ref|ZP_16114908.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC065]
gi|421679794|ref|ZP_16119662.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC111]
gi|421689324|ref|ZP_16129008.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii IS-143]
gi|421693432|ref|ZP_16133074.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii IS-116]
gi|421694790|ref|ZP_16134407.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii WC-692]
gi|421700361|ref|ZP_16139878.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii IS-58]
gi|421702501|ref|ZP_16141981.1| ATP-dependent DNA helicase [Acinetobacter baumannii ZWS1122]
gi|421706312|ref|ZP_16145728.1| ATP-dependent DNA helicase [Acinetobacter baumannii ZWS1219]
gi|421788436|ref|ZP_16224736.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii Naval-82]
gi|421792577|ref|ZP_16228730.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii Naval-2]
gi|421798104|ref|ZP_16234134.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii Naval-21]
gi|421801803|ref|ZP_16237760.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii Canada BC1]
gi|421805096|ref|ZP_16240990.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii WC-A-694]
gi|421807715|ref|ZP_16243575.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC035]
gi|424053410|ref|ZP_17790942.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii Ab11111]
gi|424060870|ref|ZP_17798361.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii Ab33333]
gi|424062934|ref|ZP_17800419.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii Ab44444]
gi|425747785|ref|ZP_18865783.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii WC-348]
gi|425752605|ref|ZP_18870512.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii Naval-113]
gi|445408171|ref|ZP_21432573.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii Naval-57]
gi|445456562|ref|ZP_21445937.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC047]
gi|445466422|ref|ZP_21450401.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC338]
gi|445481277|ref|ZP_21455813.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii Naval-78]
gi|445491365|ref|ZP_21459680.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii AA-014]
gi|169149861|emb|CAM87752.1| ATP-dependent DNA helicase [Acinetobacter baumannii AYE]
gi|183208750|gb|ACC56148.1| Superfamily I DNA and RNA helicase [Acinetobacter baumannii ACICU]
gi|193076634|gb|ABO11317.2| ATP-dependent DNA helicase [Acinetobacter baumannii ATCC 17978]
gi|213055823|gb|ACJ40725.1| ATP-dependent DNA helicase [Acinetobacter baumannii AB0057]
gi|213987021|gb|ACJ57320.1| ATP-dependent DNA helicase rep [Acinetobacter baumannii AB307-0294]
gi|260410687|gb|EEX03985.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii ATCC 19606
= CIP 70.34]
gi|322507053|gb|ADX02507.1| ATP-dependent DNA helicase [Acinetobacter baumannii 1656-2]
gi|323516920|gb|ADX91301.1| superfamily I DNA/RNA helicase [Acinetobacter baumannii
TCDC-AB0715]
gi|332728427|gb|EGJ59802.1| putative ATP-dependent DNA helicase Rep [Acinetobacter baumannii
6013150]
gi|332731725|gb|EGJ63006.1| putative ATP-dependent DNA helicase Rep [Acinetobacter baumannii
6013113]
gi|333366410|gb|EGK48424.1| superfamily I DNA/RNA helicase [Acinetobacter baumannii AB210]
gi|342224388|gb|EGT89424.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii ABNIH1]
gi|342233468|gb|EGT98196.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii ABNIH2]
gi|342236588|gb|EGU01102.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii ABNIH4]
gi|342236649|gb|EGU01160.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii ABNIH3]
gi|347592615|gb|AEP05336.1| ATP-dependent DNA helicase [Acinetobacter baumannii MDR-ZJ06]
gi|385879422|gb|AFI96517.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii MDR-TJ]
gi|395522609|gb|EJG10698.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC137]
gi|395551753|gb|EJG17762.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC189]
gi|395557348|gb|EJG23349.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC143]
gi|395563544|gb|EJG25197.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC109]
gi|395569380|gb|EJG30042.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii Naval-17]
gi|398328118|gb|EJN44245.1| ATP-dependent DNA helicase [Acinetobacter baumannii AC12]
gi|400207536|gb|EJO38506.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii Canada
BC-5]
gi|400210973|gb|EJO41937.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii IS-123]
gi|400382337|gb|EJP41015.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC032]
gi|400391066|gb|EJP58113.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii Naval-81]
gi|404557935|gb|EKA63223.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii IS-116]
gi|404558704|gb|EKA63985.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii IS-143]
gi|404567025|gb|EKA72153.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii WC-692]
gi|404570743|gb|EKA75816.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii IS-58]
gi|404668822|gb|EKB36731.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii Ab33333]
gi|404669198|gb|EKB37105.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii Ab11111]
gi|404674936|gb|EKB42661.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii Ab44444]
gi|407193954|gb|EKE65102.1| ATP-dependent DNA helicase [Acinetobacter baumannii ZWS1122]
gi|407194242|gb|EKE65385.1| ATP-dependent DNA helicase [Acinetobacter baumannii ZWS1219]
gi|407900342|gb|AFU37173.1| ATP-dependent DNA helicase [Acinetobacter baumannii TYTH-1]
gi|408504859|gb|EKK06589.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii Naval-72]
gi|408507941|gb|EKK09628.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC0162]
gi|408508132|gb|EKK09818.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii IS-235]
gi|408517814|gb|EKK19352.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii IS-251]
gi|408693021|gb|EKL38633.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC098]
gi|408695216|gb|EKL40772.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC180]
gi|408701662|gb|EKL47085.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC074]
gi|408702212|gb|EKL47625.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii Naval-13]
gi|408709329|gb|EKL54575.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii Naval-83]
gi|408715728|gb|EKL60850.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC110]
gi|409986573|gb|EKO42767.1| ATP-dependent DNA helicase [Acinetobacter baumannii AC30]
gi|410382997|gb|EKP35531.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC065]
gi|410383665|gb|EKP36192.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC099]
gi|410386423|gb|EKP38894.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC087]
gi|410390613|gb|EKP42996.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC111]
gi|410395277|gb|EKP47584.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii Naval-21]
gi|410400157|gb|EKP52337.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii Naval-2]
gi|410403048|gb|EKP55150.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii Naval-82]
gi|410405060|gb|EKP57113.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii Canada BC1]
gi|410410146|gb|EKP62066.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii WC-A-694]
gi|410416696|gb|EKP68468.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC035]
gi|425492824|gb|EKU59076.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii WC-348]
gi|425498836|gb|EKU64902.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii Naval-113]
gi|444764499|gb|ELW88812.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii AA-014]
gi|444770630|gb|ELW94780.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii Naval-78]
gi|444777821|gb|ELX01842.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC047]
gi|444778233|gb|ELX02252.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii OIFC338]
gi|444780774|gb|ELX04702.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii Naval-57]
gi|452954194|gb|EME59598.1| ATP-dependent DNA helicase [Acinetobacter baumannii MSP4-16]
Length = 679
Score = 223 bits (567), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 203/724 (28%), Positives = 337/724 (46%), Gaps = 120/724 (16%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAAS 292
LN++Q E A PLL++AG GSGK I I AMTFT AA
Sbjct: 7 LNNKQ-EEAMKYTQGPLLVLAGAGSGKTSVITRKIAYLVQHCRIPAHRITAMTFTNKAAR 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ ++ + AK L++STFH+F L L R + L + F +I++A
Sbjct: 66 EMKERVTKLLSREEAKGLSVSTFHTFGLNLLRLELKNLPLKANF----------SILDAD 115
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM- 411
KRI D++ D G L A +S +K D +
Sbjct: 116 D---------CKRILMDLMHRDNLSGAESKELI---AKAMKKISDWK--------NDLIL 155
Query: 412 -DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
+ A ++ +TP + + A + + Y LR+ NA+D+ DLI +LL EV
Sbjct: 156 PEQAHSTCETPEDVQ------FAHLYQLYERNLRAYNAVDFDDLIVMPTRLLQENAEVRD 209
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFR 529
++Q+ + ++VDE+QDT+ QY L+++L + T VGDDDQSI+++ GA +
Sbjct: 210 KWQNRVRYLLVDEYQDTNTAQYILVKLLVGVMGQFTAVGDDDQSIYAWRGAKPENMALLK 269
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
+DF N I+L +NYRST I++AA+ +IQ+N K + +D HG I I C N+D
Sbjct: 270 QDFPNLHIIKLEQNYRSTSRILKAANCVIQNNPHIFD-KKLWSDKGHGEVIRIITCRNDD 328
Query: 590 AQCAFIIDKILEHA-SNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAF 647
+ ++ +L H NG ++ A+LYR +V +T R+ +IP+ + G +F
Sbjct: 329 DEAERVVKDLLTHKLMNGK----NWKDYAVLYRGNFQARVLETQLRQMQIPYKLSGGTSF 384
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI--DKISTIRK--- 702
+ + ++ +++ LR + DD + R+ KR I + +K+ +
Sbjct: 385 FARAEIKDVMSYLRLIINPEDDSAFLRIINT--------PKRAIGPVTLEKLGLFAQENN 436
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ D ++S + TQ + + IS R + V M+ +
Sbjct: 437 LSLLGASSD---QRLSMVLPKKAETQLHEF---ADFISTFTRELLEDDEPVPKVRQMMNE 490
Query: 763 K----YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
Y+ EQ A + KL N +N L S +Q L+ D D+
Sbjct: 491 AGYIDYIREQSATPAQEKSKLDNIEN-LFSSIQNLINRAEDV----------------DE 533
Query: 819 KGCINVLKAFI--DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
K +V++ + D + +++ E ++ + V L T+H +KGLE+ V++ E
Sbjct: 534 KNIESVIRKLVLLDMLEQQQEE-------EDTDKVNLLTLHAAKGLEFPYVYIMGLEEEL 586
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDAN---WQLLQPSRFLK 933
+P H+ + A ++EEERRL+YV +TRAR+ L + N + + PSRFL
Sbjct: 587 LP--HKNSIA----AETIEEERRLMYVGITRARQGLTLTLAEQRKNGGQMKQMTPSRFLD 640
Query: 934 EIPH 937
E+P
Sbjct: 641 ELPQ 644
>gi|421240640|ref|ZP_15697186.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2080913]
gi|395608431|gb|EJG68525.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2080913]
Length = 763
Score = 223 bits (567), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 214/731 (29%), Positives = 335/731 (45%), Gaps = 119/731 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ +E
Sbjct: 266 EKDYPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRADDE 324
Query: 589 DAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
+ F+ I L + N + A+LYR + + A + IP+ + G
Sbjct: 325 LDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGT 379
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTI 700
FY +K +R IIA L D+ + R+ E KR ++ I + +
Sbjct: 380 KFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANL 431
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
+ S + A+ +I + I G +S +L E + L SI+ ++ SV
Sbjct: 432 QNMSMLDASANIMLSGIKGKTAQSIWDFANMMLDLREQLDHL-----SITELVESV---- 482
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
LE+ VD +LN L S + + ++ +FLS + +V +++ G
Sbjct: 483 -----LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTTDVTEEETG 529
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 530 -LDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGMEENVFPLS 585
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLK 933
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 586 R-----ATEDSDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFIN 636
Query: 934 EIPHHLREVQA 944
EI L E Q
Sbjct: 637 EISSDLLEYQG 647
>gi|182684161|ref|YP_001835908.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CGSP14]
gi|182629495|gb|ACB90443.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CGSP14]
Length = 763
Score = 223 bits (567), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 213/731 (29%), Positives = 332/731 (45%), Gaps = 119/731 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIIAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ +E
Sbjct: 266 EKDYPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRADDE 324
Query: 589 DAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
+ F+ I L + N + A+LYR + + A + IP+ + G
Sbjct: 325 LDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGT 379
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTI 700
FY +K +R IIA L D+ + R+ E KR ++ I + +
Sbjct: 380 KFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGLGTVEKIRDFANL 431
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
+ S + A+ +I + I G +S +L E + L SI+ ++ SV
Sbjct: 432 QNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITELVESV---- 482
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
LE+ VD +LN L S + + ++ +FLS + +V +++ G
Sbjct: 483 -----LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTTDVTEEETG 529
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
+ + D +T+ + + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 530 LDKLSRFLNDLALIADTDSGSQETSE----VTLMTLHAAKGLEFPVVFLIGMEENVFPLS 585
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLK 933
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 586 R-----ATEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFIN 636
Query: 934 EIPHHLREVQA 944
EI L E Q
Sbjct: 637 EISSDLLEYQG 647
>gi|431808316|ref|YP_007235214.1| ATP dependent DNA helicase [Brachyspira pilosicoli P43/6/78]
gi|430781675|gb|AGA66959.1| ATP dependent DNA helicase [Brachyspira pilosicoli P43/6/78]
Length = 663
Score = 223 bits (567), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 147/444 (33%), Positives = 229/444 (51%), Gaps = 60/444 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASE 293
LN++Q + A ++ P+L +AG GSGK GI PSNILA+TFT AA+E
Sbjct: 5 LNEEQ-KKAVEHINGPMLALAGAGSGKTRVITERIAYLIKNGIDPSNILAVTFTNKAANE 63
Query: 294 MRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVR 353
MR+RI +++ K K+L ISTFHSF +++ + +KL F IY R
Sbjct: 64 MRERIAALL-KEKPKQLVISTFHSFCVRVLKLDIDKLGYKKNFSIYSSSDSRT------- 115
Query: 354 LLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDV 413
L+ N +++ + + L D + + N M ++ ++ E+
Sbjct: 116 LIRN----ILREVKVNTLNYDENLFAWYIDRYKNNLM-----KPNEVVPHDDLEK----- 161
Query: 414 AKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQ 473
I + E Y L+ NA+D++DLI+ ++ L FP+V +YQ
Sbjct: 162 -----------------IAKRVYEVYQNYLKGYNAVDFNDLINLTIDLYINFPDVLDKYQ 204
Query: 474 DSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRKDF 532
+ +K I+VDE+QDT+ QY L +LAS + I +VGDDDQSI++F GAD+S SF ++
Sbjct: 205 ERFKYIMVDEYQDTNLAQYKLTSLLASKYKNIVVVGDDDQSIYAFRGADVSNILSFENEY 264
Query: 533 LNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQC 592
K I L +NYRST+ I+EAA ++I +N +R + K V N G +I C +E +
Sbjct: 265 PEAKIITLNKNYRSTKAILEAAHAVISNNTQR-KAKEVVAVNDEGIPPVIMPCEDERDEA 323
Query: 593 AFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGV-AFYRKK 651
FI + I + A N +Y + AIL+R ++F+ A R R IP+ + G FY +K
Sbjct: 324 QFIAENITQTAINKN---LNYENFAILFRMNSQSRIFEEALRFRGIPYTVVGAFQFYERK 380
Query: 652 VVRAIIAMLRTTLPGCDDGPYRRV 675
++ I+A L + D+ RV
Sbjct: 381 EIKDILAYLNLFVNPEDEVSLLRV 404
>gi|419442628|ref|ZP_13982656.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA13224]
gi|379551929|gb|EHZ17020.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA13224]
Length = 763
Score = 223 bits (567), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 214/731 (29%), Positives = 335/731 (45%), Gaps = 119/731 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTTYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ +E
Sbjct: 266 EKDYPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRADDE 324
Query: 589 DAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
+ F+ I L + N + A+LYR + + A + IP+ + G
Sbjct: 325 LDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGT 379
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTI 700
FY +K +R IIA L D+ + R+ E KR ++ I + +
Sbjct: 380 KFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGLGTVEKIRDFANL 431
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
+ S + A+ +I + I G +S +L E + L SI+ ++ SV
Sbjct: 432 QNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITELVESV---- 482
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
LE+ VD +LN L S + + ++ +FLS + +V +++ G
Sbjct: 483 -----LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTTDVTEEETG 529
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 530 -LDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGMEENVFPLS 585
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLK 933
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 586 R-----ATEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFIN 636
Query: 934 EIPHHLREVQA 944
EI L E Q
Sbjct: 637 EISSDLLEYQG 647
>gi|330718929|ref|ZP_08313529.1| ATP-dependent DNA helicase PcrA [Leuconostoc fallax KCTC 3537]
Length = 745
Score = 223 bits (567), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 204/728 (28%), Positives = 335/728 (46%), Gaps = 120/728 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ +ND+Q EA PLLI+AG GSGK I P ILA+TFT
Sbjct: 7 IAGMNDKQAEA-VQTTQGPLLIMAGAGSGKTRVLTHRIAHLIEDLNIFPWRILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++RI +V + A+++ +STFH+ ++++ R EK+ + F I QR
Sbjct: 66 AAKEMKERIARLVDEDVARDIWVSTFHALAVRILRRDGEKIGLSRNFTIVDTSAQR---- 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMM----NAMLFFSMSSFKLCQYNK 405
++KR+ D L D + RA L + N ML
Sbjct: 122 -----------TLMKRVIND-LNLDTNQYDPRAILGAISNAKNDML-------------- 155
Query: 406 FERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
D AK +G I E A Y L+ ++D+ DLI +++L
Sbjct: 156 ---SPQDFAKQAGN-------IYQETVAEAYAAYQAELKRAQSVDFDDLIMLTIELFRQS 205
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISG 524
P+V + YQ+ ++ + VDE+QDT+ QY+++ +LA+ ++ + +VGD DQSI+ + GA+++
Sbjct: 206 PDVLERYQNQFEYLHVDEYQDTNDAQYTIVNMLAARSKNLAVVGDADQSIYGWRGANMNN 265
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+F +D+ + + L +NYRST+ I++AA+ +I +N +R + K + T N G KI
Sbjct: 266 ILNFEQDYPDAHVVLLEQNYRSTQNILDAANDVIANNNER-RPKQLWTQNGEGEKITYYR 324
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + F++ KI + +Y AILYR + + A + +P+ +
Sbjct: 325 AQTERDEANFVLAKIQKLREEQK---HAYSDFAILYRTNAQSRNMEEALVKANMPYTMVG 381
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKIST 699
G FY +K + II+ L D+ + RV E K+ + I+H+ + +
Sbjct: 382 GHKFYERKEILDIISYLNLIANPNDNAAFERVV-------NEPKRGIGPTSINHLREFAN 434
Query: 700 IRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANM 759
+ S+++A I A ++L ++ TL+ ++ + +T +A M
Sbjct: 435 RMEWSYMTAIDSIELAPELTARAVTKLLAFADLMHTLQQQAEFL--------TVTELAEM 486
Query: 760 VPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
V + K+L + ND S Q L ++ +FLS KE D+
Sbjct: 487 VMTRSGYR----------KMLQDKNDPDS--QARLENLEEFLSV----TKEFD--DKYNA 528
Query: 820 GCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
I+ + ID++ + + +VTL T+H +KGLE+ +VF+ E PL
Sbjct: 529 DDIDAVNPLIDFLGSTALMSDLDDFEEGDGAVTLMTLHAAKGLEFPVVFMVGLEEGIFPL 588
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLF-------ILYVMMDANWQLLQPSRFL 932
+ +EEERRL YV +TRA KKLF +LY +N QPSRF+
Sbjct: 589 AR-----ATQDDDQLEEERRLAYVGITRAMKKLFLTNAFSRLLYGRTQSN----QPSRFI 639
Query: 933 KEI-PHHL 939
EI P L
Sbjct: 640 DEIDPKRL 647
>gi|383766757|ref|YP_005445738.1| ATP-dependent DNA helicase PcrA [Phycisphaera mikurensis NBRC
102666]
gi|381387025|dbj|BAM03841.1| ATP-dependent DNA helicase PcrA [Phycisphaera mikurensis NBRC
102666]
Length = 802
Score = 223 bits (567), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 207/745 (27%), Positives = 339/745 (45%), Gaps = 121/745 (16%)
Query: 239 DEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILA 283
D ++ + L + Q EA + PLL++AGPGSGK G+ P ++LA
Sbjct: 44 DHAAELTEGLTEPQAEA-VAHVDGPLLVLAGPGSGKTRVITRRVAYLVRACGVPPWHVLA 102
Query: 284 MTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQ 343
+TFT AA EMR+R+ ++ + A+ T+STFH+ +L R HAE++ + IY
Sbjct: 103 ITFTNKAAGEMRERVAQLLTEKQARAATVSTFHALCARLIRQHAERVGLPPGYSIYDTAD 162
Query: 344 QRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQY 403
Q+ AI A+ LE +N F S
Sbjct: 163 QKAAIKTALSELE------------------------------INPKNFAPASMLA---- 188
Query: 404 NKFERDGMDVAKASGKTPAEFRKIGDEIG----AAILENYNGILRSCNALDYHDLISCSV 459
G+ AK TPA ++ + A + Y IL +A+D+ DL+ +V
Sbjct: 189 ------GISNAKNELLTPAAYQATASDFHKRTVAKVYAKYQQILVRNSAVDFDDLLMKTV 242
Query: 460 KLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFN 518
+L S P+V E QD ++ I+VDE+QDT+ Q+ + LA SH+ + + GD DQSI+ +
Sbjct: 243 ELCSNHPDVLAELQDRFRYILVDEYQDTNRAQFMIADFLAKSHHNLMVTGDPDQSIYGWR 302
Query: 519 GADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGS 578
GADI F + K IRL +NYRST+ I+ AA +LI +N +R + K + TDN G
Sbjct: 303 GADIRNILDFETGYAEAKTIRLEQNYRSTKTILAAADALIANNARR-KAKRLFTDNDDGG 361
Query: 579 KIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKI 638
+++ + +++D + F+ +++ H G + +A+ YR + + A R+ I
Sbjct: 362 PVVVTKTYDQDQEAQFLAERLKHHHDAG----TPWSDMAVFYRINSLSRSLEDALRDGAI 417
Query: 639 PFNI-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRV---------------FKAFLLL 682
P+ I G AFY +K V+ +A LR D+ + R+ +A L
Sbjct: 418 PYQIARGTAFYDRKEVKDALAFLRAIANPADEVTHFRIINTPARGISAASVKAIRAHTLA 477
Query: 683 EKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQL--TQGRKVLLTLEMIS 740
+ + +KI+ + + ++ A F A + G +R+ L T G +L+
Sbjct: 478 TDQPLNGALADPEKIAGLNNRAQVAVAK--FHAMLEGWRQRAGLVATPGEGLLVP----- 530
Query: 741 KLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDF 800
RR+ S S+A++V R V+D G ND Q LA++ +
Sbjct: 531 ---RRDADPSEQ-GSLADLV--------RDVIDRSGLDAFYR-NDKSDPDQERLANLGEL 577
Query: 801 LS--TKFTAAKE----EGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLT 854
++ T+F E E + D + G L F++ ++ + SVTL
Sbjct: 578 VTSVTQFEEQMELDRLEDDPDAEVPGLGEKLLGFLERVA---LVADADSIDAADGSVTLM 634
Query: 855 TIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI 914
T+H +KGLE+ +V + + +P H+ +EEERRL +V +TRA + L++
Sbjct: 635 TLHAAKGLEFPVVGMIALEDGLLP--HQRAAEDE---DEMEEERRLAFVGITRAERHLYL 689
Query: 915 L---YVMMDANWQLLQPSRFLKEIP 936
Y + PSRFL E+P
Sbjct: 690 TSTKYRTVFGRTNPTVPSRFLDELP 714
>gi|418076252|ref|ZP_12713490.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47502]
gi|353749379|gb|EHD30024.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47502]
Length = 763
Score = 223 bits (567), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 214/731 (29%), Positives = 335/731 (45%), Gaps = 119/731 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ +E
Sbjct: 266 EKDYPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNIWTQNADGEQIVYYRADDE 324
Query: 589 DAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
+ F+ I L + N + A+LYR + + A + IP+ + G
Sbjct: 325 LDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGT 379
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTI 700
FY +K +R IIA L D+ + R+ E KR ++ I + +
Sbjct: 380 KFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGLGTVEKIRDFANL 431
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
+ S + A+ +I + I G +S +L E + L SI+ ++ SV
Sbjct: 432 QNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITELVESV---- 482
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
LE+ VD +LN L S + + ++ +FLS + +V +++ G
Sbjct: 483 -----LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTTDVTEEETG 529
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 530 -LDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGMEENVFPLS 585
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLK 933
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 586 R-----ATEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFIN 636
Query: 934 EIPHHLREVQA 944
EI L E Q
Sbjct: 637 EISSDLLEYQG 647
>gi|433450254|ref|ZP_20412602.1| uvrD/REP helicase N-terminal domain protein [Mycoplasma sp. G5847]
gi|431933954|gb|ELK20509.1| uvrD/REP helicase N-terminal domain protein [Mycoplasma sp. G5847]
Length = 724
Score = 223 bits (567), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 208/730 (28%), Positives = 342/730 (46%), Gaps = 120/730 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L LN QQL AA ++ P+ I+AG GSGK I PS ILA+TFT
Sbjct: 7 LDLLNPQQL-AAVLNIDKPVRIIAGAGSGKTRVITTKIAYLIEKQHIDPSRILAVTFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ I K ISTFH++ ++ R + + +FLI Q+R I
Sbjct: 66 AAKEMKERVLQITNNEN-KSPFISTFHAWCSKVLRIDGKHIGLKDKFLIIDSDDQKRIIK 124
Query: 350 EAVR-----LLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYN 404
A++ L EN+K K+I L +
Sbjct: 125 NAIKESNIELSENDKKTFDKKI---------------------------------LYKIK 151
Query: 405 KFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLST 464
+++ + +D ++A +F D+ A I Y L N++D+ DL +L
Sbjct: 152 QWKEESVDPSEAILSATNQF----DKNFATIYRLYQNTLLENNSIDFDDLQIYVYQLFKN 207
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADIS 523
++ ++++S+ ++VDEFQDT+ +Q+SL++ L + N +T+VGD DQ+I+S+ GA +
Sbjct: 208 NEDILNKWKNSYDYVLVDEFQDTNDIQFSLIKFLTINTNHLTVVGDPDQTIYSWRGAKLD 267
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
+F K + N I L +NYRST+ I++ ++S I++N R Q K + T+N G K+++K
Sbjct: 268 IILNFNKTYTNAISIVLNQNYRSTKQILDISNSFIKNNKHREQ-KEIFTNNKSGKKVVLK 326
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-I 642
EC ++ +++ KI E G Y I ILYR + F+ +KIPF I
Sbjct: 327 ECKTRVSEASYVASKIKELIKQG----YHYKDIFILYRMNAWSQDFEKELTNKKIPFQLI 382
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRK 702
G+ F +KV++ +A L+ + D +RV L L + I+ I +T+ +
Sbjct: 383 GGIKFRERKVIKDAMAFLK-MISIKDKLSCQRV----LSLLPKIGNMTIEKIINFATVNE 437
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLL-----TLEMISKLVRREPSISAVITSVA 757
S IF +T K LL L+ + ++ ++ + T++
Sbjct: 438 LS-------IFDL----------ITNENKDLLHTITKNLDELVEVFKKAHELYLDNTNIE 480
Query: 758 NMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQD 817
++ KYLL Q D K+ N+ +DL ++ L D +F D
Sbjct: 481 EIL--KYLLTQSGYE--DKLKIKNQQDDLDNI--NALYDQLKRFDDEF---------DPK 525
Query: 818 KKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
G N L AF+ + E + + V+L TIH +KGLE +VF+ N+
Sbjct: 526 YYGEENKLIAFL----QEEALTSDIDEAEQIDKVSLLTIHAAKGLENKVVFIVGLNKDIF 581
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSRFLKE 934
P + K +EEERR LYVA+TRA+++LF+ YV D ++ L+PS+F+ E
Sbjct: 582 P-----SRLSETKINELEEERRALYVALTRAKEELFLTYVKGDYSYISQSELKPSKFINE 636
Query: 935 IPHHLREVQA 944
+ L + ++
Sbjct: 637 LDKDLYDFES 646
>gi|260770678|ref|ZP_05879608.1| ATP-dependent DNA helicase Rep [Vibrio furnissii CIP 102972]
gi|375129397|ref|YP_004991492.1| ATP-dependent DNA helicase Rep [Vibrio furnissii NCTC 11218]
gi|260614259|gb|EEX39448.1| ATP-dependent DNA helicase Rep [Vibrio furnissii CIP 102972]
gi|315178566|gb|ADT85480.1| ATP-dependent DNA helicase Rep [Vibrio furnissii NCTC 11218]
Length = 671
Score = 223 bits (567), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 201/738 (27%), Positives = 357/738 (48%), Gaps = 99/738 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGKGISPSN---------------ILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK +N I A+TFT AA
Sbjct: 3 LNPRQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCDYKARHIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G +GKA ++ L +STFH+ L + R ++L + F ++
Sbjct: 62 EMKERVGQTLGKAESRGLMVSTFHTLGLNIIRREYKQLGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R L ++S++K D +
Sbjct: 110 ---DQDQLALLKELTEKQL--DGDKDLLR--------QLTSTISNWK--------NDMLS 148
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
+A + E ++ A E Y +++ NALD+ DLI V LL EV Q +
Sbjct: 149 PEQAKAQAQGE----QQQLFAFCYEMYQKQMQAYNALDFDDLILMPVLLLRHHDEVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
++ + ++VDE+QDT++ QY L+++L R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 RNRIRYLLVDEYQDTNSSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGQD 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F N + I+L +NYRST I+ AA+ LI +N + K++ ++ G K+ + +NED +
Sbjct: 265 FPNLRLIKLEQNYRSTSRILRAANILIANNPHVYE-KSLFSEIPDGEKLKVVLANNEDHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +I+ H + Y AILYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AEKVTAEIIAHKF---LNRTEYRDYAILYRGNHQSRLIEKSLMQNRVPYKLSGGTSFFSR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ +E ++ + + +R S +
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PRREIGPATLEKLGSYANMRGKSLFECSF 437
Query: 711 DI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQR 769
++ +SG L R+ L I+ R ++ AV + V ++ + +L E
Sbjct: 438 ELGLEQHLSG----RGLENLRRFTQWLVAIADNAERGNTVDAVRSLVRDIHYEDWLYETS 493
Query: 770 AVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAF 828
+ + + +V+D S + A EG N DQ++K LK
Sbjct: 494 SSA---------------KAAEMRMKNVSDLYS--WIVADLEGDNYDQEEK----TLKEV 532
Query: 829 IDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVN 888
+ ++ R+ R + D+ ++V L T+H SKGLE+ V++ A E +P H+ +++
Sbjct: 533 VQRLTLRDMME-RGEEDDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILP--HQ--TSID 587
Query: 889 EKGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAE 945
E +VEEERRL+YV +TRA+++L F++ +LL+P SRFL E+P E + +
Sbjct: 588 E--DNVEEERRLMYVGITRAQRELTFVMCKERRQFGELLKPTQSRFLDELPFDDVEWEVK 645
Query: 946 QSVQDQHENIPEGTAQFT 963
+ Q E + +G A
Sbjct: 646 KKPLSQEERMAKGQAHIA 663
>gi|326336392|ref|ZP_08202563.1| ATP-dependent helicase PcrA [Capnocytophaga sp. oral taxon 338 str.
F0234]
gi|325691566|gb|EGD33534.1| ATP-dependent helicase PcrA [Capnocytophaga sp. oral taxon 338 str.
F0234]
Length = 773
Score = 223 bits (567), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 152/451 (33%), Positives = 238/451 (52%), Gaps = 57/451 (12%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
YL LN+ Q A ++++AG GSGK G+ P NILA+TFT
Sbjct: 3 YLDELNEAQ-RAPVVHKDGAVMVIAGAGSGKTRVLTYRIAYLMQQGVDPFNILALTFTNK 61
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR--- 346
AA EM++RIG IVG++ A+ L + TFHS ++ R A +L +F IY +R
Sbjct: 62 AAREMKERIGRIVGQSEARNLWMGTFHSVFARILREEAYRLGFPRDFTIYDQQDSQRLIS 121
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
AII+ + L ++++ K+I++ R S + N ++ ++ F
Sbjct: 122 AIIKEMGL--DKEVYKYKQIAS------------RISSYKNN---LITVKAY-------F 157
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
E + A A K P +IGD I NY A+D+ DL+ + +LL+ FP
Sbjct: 158 ENHDLQEADAMAKRP----RIGD-----IYRNYVERCFKAGAMDFDDLLLRTNELLNRFP 208
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGF 525
EV +YQ+ ++ I+VDE+QDT+ QY +++ LA I +VGDD QSI++F GA+I
Sbjct: 209 EVLAKYQNRFRYILVDEYQDTNHSQYLIVRALADRFQNICVVGDDAQSIYAFRGANIDNI 268
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
+F+KD+ RL +NYRST+ IVEAA+++I+HN R + K V T+N +GS+I +
Sbjct: 269 FNFQKDYPKVGIYRLEQNYRSTKNIVEAANNVIEHNKARLE-KVVWTENENGSRIKVHRS 327
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-G 644
+ + F+ I E A SYG A+LYR + + A R+R IP+ I+ G
Sbjct: 328 PTDADEGRFVAGTIFETAMQKQR---SYGDFAVLYRTNSQSRAIEDALRKRDIPYYIYGG 384
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRV 675
++FY+ K ++ I+A R D+ +R+
Sbjct: 385 LSFYQHKEIKDILAYFRLVANENDEEALQRI 415
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 8/93 (8%)
Query: 846 DNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAM 905
+++N V+L TIH +KGLE+ VF+ E P + +EEERRL YVA+
Sbjct: 559 EDDNRVSLMTIHLAKGLEFPYVFIVGMEEDLFP-----SALSQNTRAELEEERRLFYVAL 613
Query: 906 TRARKKLFILYVMMDANWQLL---QPSRFLKEI 935
TRA K+ ++ Y W L +PSRF++EI
Sbjct: 614 TRAEKQAYLTYTENRYRWGKLMDAEPSRFIEEI 646
>gi|149024889|ref|ZP_01836290.1| methionine aminopeptidase [Streptococcus pneumoniae SP23-BS72]
gi|418102802|ref|ZP_12739876.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae NP070]
gi|418130256|ref|ZP_12767140.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA07643]
gi|418187099|ref|ZP_12823627.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47360]
gi|418229835|ref|ZP_12856440.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae EU-NP01]
gi|418232155|ref|ZP_12858742.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA07228]
gi|418236612|ref|ZP_12863180.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA19690]
gi|419475485|ref|ZP_14015325.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA14688]
gi|419477751|ref|ZP_14017576.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA18068]
gi|419479930|ref|ZP_14019737.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA19101]
gi|419486639|ref|ZP_14026404.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA44128]
gi|419499624|ref|ZP_14039321.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47597]
gi|421208910|ref|ZP_15665930.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2070005]
gi|421243031|ref|ZP_15699551.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2081074]
gi|421270450|ref|ZP_15721306.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SPAR48]
gi|147929512|gb|EDK80506.1| methionine aminopeptidase [Streptococcus pneumoniae SP23-BS72]
gi|353775435|gb|EHD55915.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae NP070]
gi|353803548|gb|EHD83840.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA07643]
gi|353852329|gb|EHE32318.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47360]
gi|353886882|gb|EHE66662.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA07228]
gi|353888733|gb|EHE68506.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae EU-NP01]
gi|353892844|gb|EHE72592.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA19690]
gi|379561030|gb|EHZ26051.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA14688]
gi|379567133|gb|EHZ32120.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA18068]
gi|379571096|gb|EHZ36055.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA19101]
gi|379587272|gb|EHZ52121.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA44128]
gi|379601394|gb|EHZ66169.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47597]
gi|395574874|gb|EJG35447.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2070005]
gi|395609224|gb|EJG69313.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2081074]
gi|395868245|gb|EJG79363.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SPAR48]
gi|429316094|emb|CCP35754.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae
SPN034156]
gi|429319438|emb|CCP32707.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae
SPN034183]
gi|429321254|emb|CCP34681.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae
SPN994039]
gi|429323074|emb|CCP30722.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae
SPN994038]
Length = 763
Score = 223 bits (567), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 209/739 (28%), Positives = 335/739 (45%), Gaps = 135/739 (18%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLMK 121
Query: 350 EAVRLLE------NEKILV--VKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
++ L NE+ ++ + D++
Sbjct: 122 RILKQLNLDPKKWNERTILGTISNAKNDLID----------------------------- 152
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
DVA A A+ + +I A Y LR ++D+ DLI +++L
Sbjct: 153 ----------DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRL 197
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGA 520
P+V YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GA
Sbjct: 198 FDQNPDVLTYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGA 257
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
D+ F KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I
Sbjct: 258 DMQNILDFEKDYPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQI 316
Query: 581 IIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKI 638
+ +E + F+ I L + N + A+LYR + + A + I
Sbjct: 317 VYYRADDELDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNI 371
Query: 639 PFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VID 692
P+ + G FY +K +R IIA L D+ + R+ E KR ++
Sbjct: 372 PYTMVGGTKFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGLGTVE 423
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV 752
I + ++ S + A+ +I + I G +S +L E + L SI+ +
Sbjct: 424 KIRDFANLQNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITEL 478
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
+ SV LE+ VD +LN L S + + ++ +FLS +
Sbjct: 479 VESV---------LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTT 521
Query: 813 NVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKA 872
+V +++ G ++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+
Sbjct: 522 DVTEEETG-LDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGM 577
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL------ 926
E PL E +EEERRL YV +TRA K ILY + +AN +LL
Sbjct: 578 EENVFPLSR-----ATEDSDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNY 628
Query: 927 -QPSRFLKEIPHHLREVQA 944
+P+RF+ EI L E Q
Sbjct: 629 NRPTRFINEISSDLLEYQG 647
>gi|415715958|ref|ZP_11466264.1| UvrD/REP helicase [Gardnerella vaginalis 1400E]
gi|388057775|gb|EIK80589.1| UvrD/REP helicase [Gardnerella vaginalis 1400E]
Length = 948
Score = 223 bits (567), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 212/753 (28%), Positives = 341/753 (45%), Gaps = 121/753 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ LN QQ +A + LLI AG GSGK PS ILA+TFT
Sbjct: 83 LEGLNPQQYKAVQYE-GPALLIGAGAGSGKTRVLTRRIAWILANRKAWPSQILAITFTNK 141
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EMRDR+ +++G T + +STFHS +++ R+H + + S F IY R
Sbjct: 142 AAAEMRDRLANLIGNNT-NSMWVSTFHSACVKILRAHGDSIGLKSGFSIYDSSDCERL-- 198
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
V+++E+E + +K+ + +L + + S F N + + + K C + +
Sbjct: 199 --VKIIESELNIDIKKFTPKLLLS-------KISDFKNNLVTW--QENLKNCAPDY--KP 245
Query: 410 GMDVAKASGKTPAEFRKIG--DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
G V+ AS F G D + AA+ Y L NA+D+ DLI +V+LL P+
Sbjct: 246 GASVSGAS-----SFNSAGNADALYAAVYAEYQNRLNVSNAVDFDDLIMLTVRLLRQNPQ 300
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS--------------------------- 500
V Y+ ++ I+VDE+QDT+ QY L++ LA
Sbjct: 301 VSAYYRRKFRYILVDEYQDTNHAQYVLIRELAGVDDAGVDDYSAVSPDLSDLPDSSVSPD 360
Query: 501 -----HNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAAS 555
+ IT+VGD DQSI++F GADI F +DF N I L +NYRST+ I++AA+
Sbjct: 361 STQLPQSSITVVGDSDQSIYAFRGADIRNIQDFEQDFPNATTIMLEQNYRSTQTILDAAN 420
Query: 556 SLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILE-HASNGPASICSYG 614
++I +N R + K + T GS II N + +++ +I +G +Y
Sbjct: 421 AVISNNANR-KPKKLWTSLGKGSPIIGYVADNAQGEASWVAQEIARLRGEDG----INYS 475
Query: 615 SIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYR 673
IAI+YR + + A + +P+ + G FY ++ V+ +A L++ DD R
Sbjct: 476 DIAIMYRANSQSRSLEDALIKSGLPYQLVGGTKFYERREVKDALAYLQSIANPDDDVNMR 535
Query: 674 RVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISA--ACDIFGAKISGTFKRSQLTQGRK 731
R+ + ++ R I + SF S D +I + + + +
Sbjct: 536 RILN---VPKRGLGARAESQITSYAKENSISFWSTLNQIDKIAEQIGISSRTFNALKSFR 592
Query: 732 VLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQ 791
L+T +I + + S V+ +V N Q LL+ L E D + +
Sbjct: 593 DLMT-SLIDFMEANDSKPSKVVENVLN---QSGLLQD-----------LRESKDPQDEFR 637
Query: 792 YLLADVTDFLSTKFTAAKEEGNV-DQDKKGCINVLKAFIDYISERETEHFRTQRHDNENS 850
V + + AA+ E N D + G + D ++ Q D
Sbjct: 638 -----VDNLSQLQSVAAEYEQNTPDANVAGFLETTALVAD------SDQLPDQGEDT-GK 685
Query: 851 VTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARK 910
VTL T+H +KGLE+ +VF+ + P + N+K + EERRL YV +TRA+K
Sbjct: 686 VTLMTLHTAKGLEYPVVFLTGMEQGTFPHSRCVD---NQK--ELCEERRLAYVGITRAKK 740
Query: 911 KLFILYVMMDANW----QLLQPSRFLKEIPHHL 939
L++ + + W +++Q S+FL EIP L
Sbjct: 741 ILYVTWAAERSQWGKSAEMIQ-SQFLDEIPADL 772
>gi|387757469|ref|YP_006064448.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae
OXC141]
gi|301800058|emb|CBW32653.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae
OXC141]
Length = 763
Score = 223 bits (567), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 209/739 (28%), Positives = 335/739 (45%), Gaps = 135/739 (18%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLMK 121
Query: 350 EAVRLLE------NEKILV--VKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
++ L NE+ ++ + D++
Sbjct: 122 RILKQLNLDPKKWNERTILGTISNAKNDLID----------------------------- 152
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
DVA A A+ + +I A Y LR ++D+ DLI +++L
Sbjct: 153 ----------DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRL 197
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGA 520
P+V YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GA
Sbjct: 198 FDQNPDVLTYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGA 257
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
D+ F KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I
Sbjct: 258 DMQNILDFEKDYPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQI 316
Query: 581 IIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKI 638
+ +E + F+ I L + N + A+LYR + + A + I
Sbjct: 317 VYYRADDELDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNI 371
Query: 639 PFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VID 692
P+ + G FY +K +R IIA L D+ + R+ E KR ++
Sbjct: 372 PYTMVGGTKFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGLGTVE 423
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV 752
I + ++ S + A+ +I + I G +S +L E + L SI+ +
Sbjct: 424 KIRDFANLQNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITEL 478
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
+ SV LE+ VD +LN L S + + ++ +FLS +
Sbjct: 479 VESV---------LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTT 521
Query: 813 NVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKA 872
+V +++ G ++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+
Sbjct: 522 DVTEEETG-LDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGM 577
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL------ 926
E PL E +EEERRL YV +TRA K ILY + +AN +LL
Sbjct: 578 EENVFPLSR-----ATEDSDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNY 628
Query: 927 -QPSRFLKEIPHHLREVQA 944
+P+RF+ EI L E Q
Sbjct: 629 NRPTRFINEISSDLLEYQG 647
>gi|417920558|ref|ZP_12564060.1| ATP-dependent DNA helicase PcrA [Streptococcus australis ATCC
700641]
gi|342828483|gb|EGU62853.1| ATP-dependent DNA helicase PcrA [Streptococcus australis ATCC
700641]
Length = 761
Score = 222 bits (566), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 211/732 (28%), Positives = 335/732 (45%), Gaps = 121/732 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +N++Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNERQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R + ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYQL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQR---- 117
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R + ++S+ K D
Sbjct: 118 -----------TLMKRI-LKQLNLDPKKWNERT--------ILGTISNAK--------ND 149
Query: 410 GMD-VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
+D VA A A+ + +I A E Y LR A+D+ DLI +++L P+V
Sbjct: 150 LIDEVAYA-----AQAGDMYTQIVAKCYEAYQKELRQSEAVDFDDLIMLTLRLFDQHPDV 204
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDS 527
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+
Sbjct: 205 LTYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILD 264
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KD+ + K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ ++
Sbjct: 265 FEKDYPDAKVVLLEENYRSTKTILQAANDVIKNNRNR-RPKNLWTQNADGEEIVYYRAND 323
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
E + F+ I E + + A+LYR + + A + IP+ + G
Sbjct: 324 EQDEAVFVAKTIEELSREAG---YKHRDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTK 380
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIR 701
FY +K +R +IA L D+ + R+ E KR +D I + ++
Sbjct: 381 FYSRKEIRDVIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVDKIRDFAQMQ 432
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
S + A+ +I + I G ++ +L E + ++ E
Sbjct: 433 GTSLLDASANIMLSGIKGKAAQAIWDFANLILDLREKLDQMTITE--------------- 477
Query: 762 QKYLLEQRAVVDFDG--GKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
L+E+ V+D G L N+ N L S Q + ++ +FLS E G+ +D+
Sbjct: 478 ---LVEE--VLDKTGYMTALTNQGN-LES--QARIENIQEFLSVT-KNFDENGDSVEDES 528
Query: 820 GCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
G ++ L F++ ++ Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 529 G-VDTLSRFLNDLALIADTDDGAQE---TSEVTLMTLHAAKGLEFPVVFLIGMEENVFPL 584
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFL 932
E +EEERRL YV +TRA K LF + +AN +LL +P+RF+
Sbjct: 585 SR-----AAEDPDELEEERRLAYVGITRAEKVLF----LTNANSRLLFGRTSYNRPTRFI 635
Query: 933 KEIPHHLREVQA 944
EI L Q
Sbjct: 636 NEISSDLLTYQG 647
>gi|414563905|ref|YP_006042866.1| ATP-dependent DNA helicase [Streptococcus equi subsp. zooepidemicus
ATCC 35246]
gi|338846970|gb|AEJ25182.1| ATP-dependent DNA helicase [Streptococcus equi subsp. zooepidemicus
ATCC 35246]
Length = 763
Score = 222 bits (566), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 209/743 (28%), Positives = 332/743 (44%), Gaps = 142/743 (19%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LDGMNDKQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R ++ K+ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMRER--ALALSPATKDTLIATFHSMCVRILRREADHIGYNRNFTIVDPGEQR---- 117
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R+ L + S + L +E
Sbjct: 118 -----------TLMKRI-VKALNLDPKKWSERSILATI------SNAKNDLLDERAYELG 159
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D+ + A + Y LR A+D+ DLI +++L P+V
Sbjct: 160 ASDLYS--------------QTVARCYKAYQEELRRSEAMDFDDLIMMTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+ +LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 AYYQQRYQYIHVDEYQDTNHAQYQLVTLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + + + L NYRST+ I++AA+ +IQHN R + K + T N+ G +I+ ++E
Sbjct: 266 EKDYPDARVVLLEENYRSTKKILQAANEVIQHNRHR-RPKKLWTQNADGEQIVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASIC-----SYGSIAILYRRQVSGKVFQTAFRERKIPFN-I 642
+ F+ I +++C S+ A+LYR + + A + IP+ +
Sbjct: 325 RDEAVFVASTI--------SNMCLELGKSFKDFAVLYRTNAQSRTIEEALLKSNIPYTMV 376
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKIS 698
G FY +K +R +IA L D+ + R+ E K+ V +D + + +
Sbjct: 377 GGTKFYSRKEIRDVIAYLTVVANPSDNLSFERIV-------NEPKRGVGPGTLDKLRQFA 429
Query: 699 TIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
+ S + AA + + + G ++ L + + +L SI+A+ +
Sbjct: 430 YGQGQSLLEAASSLEQSPLKGKAAQAMLALASLLSDLRADLDQL-----SITALAEA--- 481
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTK-----FTAAKEEGN 813
LLE+ +D +L N L S Q + ++ +FLS +A ++E
Sbjct: 482 ------LLEKTGYLD-----MLRVQNTLES--QARIENIEEFLSVTKSFDDLSAQRQEHE 528
Query: 814 VDQDKKG-CINVLKAFIDYISERETEHFRTQRHDNENS----VTLTTIHQSKGLEWDIVF 868
D+ G +N L D D+ N+ VTL T+H +KGLE+ +VF
Sbjct: 529 AGIDRLGRFLNDLALIAD--------------SDDGNAETAEVTLMTLHAAKGLEFPVVF 574
Query: 869 VAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-- 926
+ E PL E +EEERRL YV +TRA + LF + +AN + L
Sbjct: 575 LIGMEEGVFPLAR-----AAEDQDELEEERRLAYVGITRAEECLF----LTNANTRTLFG 625
Query: 927 -----QPSRFLKEIPHHLREVQA 944
+P+RFLKE+ +L Q
Sbjct: 626 KSSYNRPTRFLKEMSENLLSFQG 648
>gi|418086812|ref|ZP_12723982.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47033]
gi|353759073|gb|EHD39659.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47033]
Length = 763
Score = 222 bits (566), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 214/731 (29%), Positives = 335/731 (45%), Gaps = 119/731 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ +E
Sbjct: 266 EKDYPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRADDE 324
Query: 589 DAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
+ F+ I L + N + A+LYR + + A + IP+ + G
Sbjct: 325 LDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGT 379
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTI 700
FY +K +R IIA L D+ + R+ E KR ++ I + +
Sbjct: 380 KFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANL 431
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
+ S + A+ +I + I G +S +L E + L SI+ ++ SV
Sbjct: 432 QNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITELVESV---- 482
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
LE+ VD +LN L S + + ++ +FLS + +V +++ G
Sbjct: 483 -----LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTTDVTEEETG 529
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 530 -LDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGMEENVFPLS 585
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLK 933
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 586 R-----ATEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFIN 636
Query: 934 EIPHHLREVQA 944
EI L E Q
Sbjct: 637 EISSDLLEYQG 647
>gi|322376782|ref|ZP_08051275.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. M334]
gi|321282589|gb|EFX59596.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. M334]
Length = 763
Score = 222 bits (566), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 211/732 (28%), Positives = 340/732 (46%), Gaps = 121/732 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +N++Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNERQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R ++ + ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYNL--NPSTQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R+ L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERSILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ ++E
Sbjct: 266 EKDYPQAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+ I E G + + A+LYR + + + + IP+ + G F
Sbjct: 325 LDEAVFVARTIDEL---GRSQNFLHKDFAVLYRTNAQSRTIEESLLKSNIPYTMVGGTKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRK 702
Y +K +R IIA L D+ + R+ E KR ++ I + ++
Sbjct: 382 YSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANMQD 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ +I + I G +S +L E + L SI+ ++ +V
Sbjct: 434 MSMLDASANIMLSGIKGKVAQSIWDFANMILDLREQLDHL-----SITELVEAV------ 482
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
LE+ VD +LN L S + + ++ +FLS + +V +++ G +
Sbjct: 483 ---LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTSDVSEEETG-L 530
Query: 823 NVLKAFID---YISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
+ L F++ I++ ++ T + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 531 DKLSRFLNDLALIADTDSGSHET------SEVTLMTLHAAKGLEFPVVFLIGMEENVFPL 584
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFL 932
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 585 SR-----AAEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFI 635
Query: 933 KEIPHHLREVQA 944
EI L E Q
Sbjct: 636 NEISSELLEYQG 647
>gi|91774719|ref|YP_544475.1| ATP-dependent DNA helicase UvrD [Methylobacillus flagellatus KT]
gi|91708706|gb|ABE48634.1| ATP-dependent DNA helicase UvrD [Methylobacillus flagellatus KT]
Length = 731
Score = 222 bits (566), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 196/728 (26%), Positives = 322/728 (44%), Gaps = 106/728 (14%)
Query: 235 QNMPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPS 279
Q M + + L LN++QLEA + L I+AG GSGK +SP
Sbjct: 2 QAMTNPTTTLLDGLNEKQLEAVTLPHQSAL-ILAGAGSGKTRVLTTRIAWLIQTGQVSPH 60
Query: 280 NILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIY 339
IL++TFT AA EM R+G+++ + + TFH +L R+H + E F I
Sbjct: 61 GILSVTFTNKAAKEMLTRLGAML-PINIRGMWAGTFHGLCNRLLRAHHREAELPPTFQIL 119
Query: 340 GHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFK 399
Q AI ++++ I + GY+ +
Sbjct: 120 DTADQLSAI---------KRVMKAMNIDDEKFPPKQVLGYINS----------------- 153
Query: 400 LCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSV 459
C+ +D + + E I E Y+ + +D+ +L+
Sbjct: 154 -CKEEGLRAYAVDAYDSHSQRMRE-----------IFEEYDKQCQREGVVDFAELLLRCY 201
Query: 460 KLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFN 518
+LLS+ + + YQ +K I+VDEFQDT+ +QY L++LA ++N I VGDDDQSI++F
Sbjct: 202 ELLSSNKSIREHYQQRFKYILVDEFQDTNRLQYLWLKLLAGTNNCIFAVGDDDQSIYAFR 261
Query: 519 GADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGS 578
GA + F DF ++L +NYRS I++AA+++I HN R KN+ T G
Sbjct: 262 GARVGNMRDFEHDFNVQNVVKLEQNYRSHSNILDAANAIIMHNRNRLG-KNLWTSAGKGE 320
Query: 579 KIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKI 638
I I E +N+ + FI+D+I G IA+LYR ++ + +
Sbjct: 321 PIRIYEGYNDKDEAVFIVDEIKALHKEG----IELSQIALLYRSNAQSRILEHELFSAGL 376
Query: 639 PFNIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKI 697
P+ ++ G+ F+ + V+ +A LR G DD RV + R ++ + ++
Sbjct: 377 PYRVYGGLRFFERAEVKHALAYLRLIANGDDDTALLRVIN---FPTRGIGARSLEQLQEL 433
Query: 698 STIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVR--REPSISAVITS 755
+ + S AAC G G LE LV+ +E SI +
Sbjct: 434 ARQQDSSLWQAACAKAGDGRPGR--------------GLEGFVALVKQMQEESIGLTLAE 479
Query: 756 VANMVPQKYLLEQRAVVDFDG-GKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
+ + L D +G +L N D + + + ++ D+ V
Sbjct: 480 QVELATRLSGLRDHYAADKEGEDRLANLDELVNAAIAFMNQDIGM-------------PV 526
Query: 815 DQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
D++ + +++L F+ + S EH Q +++ L T+H +KGLE+ VF++ E
Sbjct: 527 DENGEVAMSMLAQFLAHASLEAGEH---QADVGRDALQLMTVHAAKGLEFHTVFISGLEE 583
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRF 931
P HE + + +EEERRL+YVA+TRAR++L++ + M+ + PSRF
Sbjct: 584 GLFP--HE---QSSYESNGLEEERRLMYVAVTRARQRLYLSFAQSRMLHGQVRYGIPSRF 638
Query: 932 LKEIPHHL 939
L EIP L
Sbjct: 639 LDEIPEAL 646
>gi|149183792|ref|ZP_01862193.1| PcrA [Bacillus sp. SG-1]
gi|148848495|gb|EDL62744.1| PcrA [Bacillus sp. SG-1]
Length = 705
Score = 222 bits (566), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 201/683 (29%), Positives = 308/683 (45%), Gaps = 108/683 (15%)
Query: 274 KGISPSNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERT 333
KG++P NILA+TFT AA EM+DRIG+I+G A E+ ISTFHS +++ R +++ T
Sbjct: 16 KGVNPYNILAITFTNKAAREMKDRIGNILG-GVADEIWISTFHSMCVRILRRDIDRIGFT 74
Query: 334 SEFLIYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFF 393
F I Q I + IL K I G
Sbjct: 75 RNFTILDTTDQLSVI---------KSILKDKNIDPKKFDPRSILG--------------- 110
Query: 394 SMSSFKLCQYNKFERDGMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNAL 449
S+SS AK KTP EF K D + + + E Y LR AL
Sbjct: 111 SISS----------------AKNELKTPEEFSKEAGSYYDNVISDVYEEYQKRLRKNQAL 154
Query: 450 DYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVG 508
D+ DLI +++L PEV + YQ ++ I VDE+QDT+ QY L++++AS + +VG
Sbjct: 155 DFDDLIMTTIQLFQRVPEVLEFYQRKFQYIHVDEYQDTNRAQYMLVKMMASRFQNLCVVG 214
Query: 509 DDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLK 568
D DQSI+ + GADI+ SF KD+ I L +NYRST+ I+ AA+ +IQ N R + K
Sbjct: 215 DSDQSIYRWRGADIANILSFEKDYPRANVILLEQNYRSTKTILHAANDVIQKNSNR-KPK 273
Query: 569 NVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKV 628
N+ T+N G KI +E ++ F+ KI E +G + AILYR +V
Sbjct: 274 NLWTENKQGEKITYYRGDSEQSEAQFVAGKIKEMTDSGKRKFSDF---AILYRTNAQSRV 330
Query: 629 FQTAFRERKIPFNI-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFK------AFLL 681
+ + I ++I GV FY +K ++ I+A LR DD RRV
Sbjct: 331 MEEILLKSNIEYSIVGGVKFYDRKEIKDILAYLRLISNPDDDISLRRVINVPKRGIGSTS 390
Query: 682 LEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISK 741
L+K ++ + + + + FI + I + I TQ ++ L E++ +
Sbjct: 391 LDKIANYAAMNDLSMMQALEEADFIGLSPKITKSVIEFKDLVKGYTQMQEYLSVTELVEE 450
Query: 742 LVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFL 801
++ + + M+ + +E Q L ++ +FL
Sbjct: 451 ILEK--------SGYREMLKAEKSIEA----------------------QSRLENIDEFL 480
Query: 802 STKFTAAKEEGNVDQDKKGCIN--VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQS 859
S T + E+ N D+ + L A ID + + E ++V L T+H +
Sbjct: 481 SV--TKSFEDTNDDKSLVAFLTDLALVADIDKLDDDEQPT---------DAVILMTLHAA 529
Query: 860 KGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMM 919
KGLE+ +VF+ E P +EEERRL YV +TRA ++L++ M
Sbjct: 530 KGLEFPVVFLMGLEEGVFPHSRSLMDE-----EEMEEERRLAYVGITRAEEELYMTNAQM 584
Query: 920 DANW---QLLQPSRFLKEIPHHL 939
+ ++ SRF+ EIP L
Sbjct: 585 RTLYGQTKMNPVSRFIAEIPEDL 607
>gi|148989130|ref|ZP_01820520.1| methionine aminopeptidase [Streptococcus pneumoniae SP6-BS73]
gi|147925353|gb|EDK76431.1| methionine aminopeptidase [Streptococcus pneumoniae SP6-BS73]
Length = 763
Score = 222 bits (566), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 209/739 (28%), Positives = 335/739 (45%), Gaps = 135/739 (18%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDSGEQRTLMK 121
Query: 350 EAVRLLE------NEKILV--VKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
++ L NE+ ++ + D++
Sbjct: 122 RILKQLNLDPKKWNERTILGTISNAKNDLID----------------------------- 152
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
DVA A A+ + +I A Y LR ++D+ DLI +++L
Sbjct: 153 ----------DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRL 197
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGA 520
P+V YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GA
Sbjct: 198 FDQNPDVLTYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGA 257
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
D+ F KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I
Sbjct: 258 DMQNILDFEKDYPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQI 316
Query: 581 IIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKI 638
+ +E + F+ I L + N + A+LYR + + A + I
Sbjct: 317 VYYRADDELDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNI 371
Query: 639 PFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VID 692
P+ + G FY +K +R IIA L D+ + R+ E KR ++
Sbjct: 372 PYTMVGGTKFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGLGTVE 423
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV 752
I + ++ S + A+ +I + I G +S +L E + L SI+ +
Sbjct: 424 KIRDFANLQNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITEL 478
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
+ SV LE+ VD +LN L S + + ++ +FLS +
Sbjct: 479 VESV---------LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTT 521
Query: 813 NVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKA 872
+V +++ G ++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+
Sbjct: 522 DVTEEETG-LDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGM 577
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL------ 926
E PL E +EEERRL YV +TRA K ILY + +AN +LL
Sbjct: 578 EENVFPLSR-----ATEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNY 628
Query: 927 -QPSRFLKEIPHHLREVQA 944
+P+RF+ EI L E Q
Sbjct: 629 NRPTRFINEISSDLLEYQG 647
>gi|421211186|ref|ZP_15668169.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2070035]
gi|421231853|ref|ZP_15688497.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2080076]
gi|395573144|gb|EJG33735.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2070035]
gi|395595882|gb|EJG56108.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2080076]
Length = 763
Score = 222 bits (566), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 214/731 (29%), Positives = 335/731 (45%), Gaps = 119/731 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ +E
Sbjct: 266 EKDYPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRADDE 324
Query: 589 DAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
+ F+ I L + N + A+LYR + + A + IP+ + G
Sbjct: 325 LDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGT 379
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTI 700
FY +K +R IIA L D+ + R+ E KR ++ I + +
Sbjct: 380 KFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGLGTVEKIRDFANL 431
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
+ S + A+ +I + I G +S +L E + L SI+ ++ SV
Sbjct: 432 QNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITELVESV---- 482
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
LE+ VD +LN L S + + ++ +FLS + +V +++ G
Sbjct: 483 -----LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTTDVTEEETG 529
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 530 -LDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGMEENVFPLS 585
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLK 933
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 586 R-----ATEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFIN 636
Query: 934 EIPHHLREVQA 944
EI L E Q
Sbjct: 637 EISSDLLEYQG 647
>gi|365926283|ref|ZP_09449046.1| ATP-dependent DNA helicase [Lactobacillus mali KCTC 3596 = DSM
20444]
Length = 754
Score = 222 bits (566), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 210/766 (27%), Positives = 356/766 (46%), Gaps = 134/766 (17%)
Query: 243 KYLQSLNDQQLEAA-CGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTF 286
+ L+ +ND+Q EA C + PLLI+AG GSGK ++P N+LA+TF
Sbjct: 15 RLLKGMNDKQQEAVLCTE--GPLLIIAGAGSGKTRVLTHRVAYLIEEKQVNPWNVLAITF 72
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR 346
T AA+EMR+RIG+++ + A ++ +STFH+ +++ R +K+ F I G +QR
Sbjct: 73 TNKAAAEMRERIGNLLEEG-ANDVWVSTFHALCVRILRRDIDKIGYNRAFTITGTSEQR- 130
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
++K I D+ F RA L ++
Sbjct: 131 --------------TLIKHILADLNIDIKKFD-PRAILSEISN----------------- 158
Query: 407 ERDGMDVAKASGKTPAEFR----KIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLL 462
AK KTPA++R +++ A + Y L + A+D+ DLI + +L
Sbjct: 159 -------AKNDLKTPADYRMNIQGPFEQVVADVYPEYQKQLENNQAVDFDDLIMLTHRLF 211
Query: 463 STFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGAD 521
P+V + YQ ++ I VDE+QDT+ QY L+ +LA NR + +VGD DQSI+ + GA+
Sbjct: 212 KEVPDVLEFYQRKFQYIHVDEYQDTNQAQYELVSLLAKKNRNLCVVGDADQSIYGWRGAN 271
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII 581
+ +F +D+ + ++L +NYRST+ I++AA+S+I++N R + K + T N+ G+KI
Sbjct: 272 VENIMNFEQDYPDTTLVKLEQNYRSTKIILQAANSVIKNNTNR-KAKELWTQNNEGTKIR 330
Query: 582 IKECHNEDAQCAFIIDKILEHA-SNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
N + + +++ I + NG C Y AILYR + + F + IP+
Sbjct: 331 YYRGQNANDEAFYVVRNIQKMMRENG----CHYNDFAILYRTNAQSRTIEETFIKANIPY 386
Query: 641 NIHGV-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHID 695
I G FY +K +R ++A ++ D + R+ E K+ + I+ ++
Sbjct: 387 KIVGAHKFYDRKEIRDVLAYMQLVTNPQDSLSFERIV-------NEPKRGIGSTSIERLN 439
Query: 696 KISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTL-EMISKL--VRREPSISAV 752
+ S + AA + A ISG + L ++I L +R + +++ +
Sbjct: 440 DFAQNMGMSLLDAASNAVLANISG--------KASNALANFADLIKDLHELRDKLNVTEM 491
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST--KFTAAKE 810
+ + K +LE D L N Q L ++ +FLS +F + E
Sbjct: 492 TERILDKSGYKKVLE-------DSKTLEN---------QSRLENLEEFLSVTKQFDDSWE 535
Query: 811 EGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVA 870
+ + D +F+D++++ + + + VTL T+H +KGLE+ IVF+
Sbjct: 536 PEDENSD---------SFVDFLADLALVSDQDSLVEETDEVTLMTLHAAKGLEFPIVFMM 586
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQ 927
E PL +EEERRL YV +TRA +LF+ M+ Q
Sbjct: 587 GMEEGIFPLSRSMMDE-----NELEEERRLAYVGITRAESELFLTNAFSRMLYGRRQNNP 641
Query: 928 PSRFLKEIPHHLREVQAEQSV------QDQHENIPEGTAQFTINLP 967
SRF++EI L + + +Q D ++ P G A+ +P
Sbjct: 642 ASRFIEEIDPELLQAENQQVANTSIRRNDSRKDYPFGQAKTRYKMP 687
>gi|417849341|ref|ZP_12495262.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK1080]
gi|339456219|gb|EGP68811.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK1080]
Length = 763
Score = 222 bits (566), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 207/737 (28%), Positives = 335/737 (45%), Gaps = 131/737 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R ++ ++ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKERAYNL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLMK 121
Query: 350 EAVRLLE------NEKILV--VKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
++ L NE+ ++ + D++
Sbjct: 122 RILKQLNLDPKKWNERTILGTISNAKNDLID----------------------------- 152
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
DVA A A+ + +I A +Y LR ++D+ DLI +++L
Sbjct: 153 ----------DVAYA-----AQAGDMYTQIVAQCYTSYQKELRQSESVDFDDLIMLTLRL 197
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGA 520
P+V YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GA
Sbjct: 198 FDQNPDVLTYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGA 257
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
D+ F KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I
Sbjct: 258 DMQNILDFEKDYPQAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQI 316
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
+ +E + F+ I E G + + A+LYR + + A + IP+
Sbjct: 317 VYYRADDELDEAVFVAKTIDEL---GRSQNFLHKDFAVLYRTNAQSRTIEEALLKSNIPY 373
Query: 641 N-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHI 694
+ G FY +K +R IIA L D+ + R+ E KR ++ I
Sbjct: 374 TMVGGTKFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKI 425
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+ ++ S + A+ +I + I G +S +L E + L SI+ ++
Sbjct: 426 RDFANMQNMSMLDASANIMLSGIKGKAAQSIWDFANMILDLREQLDHL-----SITELVE 480
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
SV LE+ VD +LN L S + + ++ +FLS + +V
Sbjct: 481 SV---------LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTSDV 523
Query: 815 DQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
+++ G ++ L F++ ++ +Q + V L T+H +KGLE+ +VF+ E
Sbjct: 524 SEEETG-LDKLSRFLNDLALIADTDSGSQE---TSEVILMTLHAAKGLEFPVVFLIGMEE 579
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------Q 927
PL E +EEERRL YV +TRA K ILY + +AN +LL +
Sbjct: 580 NVFPLSR-----AAEDQDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNR 630
Query: 928 PSRFLKEIPHHLREVQA 944
P+RF+ EI L E Q
Sbjct: 631 PTRFINEISSDLLEYQG 647
>gi|387626419|ref|YP_006062594.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae
INV104]
gi|417694008|ref|ZP_12343196.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47901]
gi|444382111|ref|ZP_21180315.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae PCS8106]
gi|444384860|ref|ZP_21182951.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae PCS8203]
gi|301794204|emb|CBW36623.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae
INV104]
gi|332202945|gb|EGJ17013.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47901]
gi|444251620|gb|ELU58089.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae PCS8203]
gi|444253071|gb|ELU59530.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae PCS8106]
Length = 763
Score = 222 bits (566), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 209/739 (28%), Positives = 335/739 (45%), Gaps = 135/739 (18%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLMK 121
Query: 350 EAVRLLE------NEKILV--VKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
++ L NE+ ++ + D++
Sbjct: 122 RILKQLNLDPKKWNERTILGTISNAKNDLID----------------------------- 152
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
DVA A A+ + +I A Y LR ++D+ DLI +++L
Sbjct: 153 ----------DVAYA-----AQAGDMYTQIVAQCYTTYQKELRQSESVDFDDLIMLTLRL 197
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGA 520
P+V YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GA
Sbjct: 198 FDQNPDVLTYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGA 257
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
D+ F KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I
Sbjct: 258 DMQNILDFEKDYPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQI 316
Query: 581 IIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKI 638
+ +E + F+ I L + N + A+LYR + + A + I
Sbjct: 317 VYYRADDELDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNI 371
Query: 639 PFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VID 692
P+ + G FY +K +R IIA L D+ + R+ E KR ++
Sbjct: 372 PYTMVGGTKFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGLGTVE 423
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV 752
I + ++ S + A+ +I + I G +S +L E + L SI+ +
Sbjct: 424 KIRDFANLQNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITEL 478
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
+ SV LE+ VD +LN L S + + ++ +FLS +
Sbjct: 479 VESV---------LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTT 521
Query: 813 NVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKA 872
+V +++ G ++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+
Sbjct: 522 DVTEEETG-LDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGM 577
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL------ 926
E PL E +EEERRL YV +TRA K ILY + +AN +LL
Sbjct: 578 EENVFPLSR-----ATEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNY 628
Query: 927 -QPSRFLKEIPHHLREVQA 944
+P+RF+ EI L E Q
Sbjct: 629 NRPTRFINEISSDLLEYQG 647
>gi|237801578|ref|ZP_04590039.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331024438|gb|EGI04494.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 669
Score = 222 bits (566), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 193/726 (26%), Positives = 323/726 (44%), Gaps = 125/726 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+AMTFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ + LT+STFH+ L + R +L F I+
Sbjct: 60 AAREMKERVGTLLRGGEGRGLTVSTFHNLGLNIIRKEHTRLGYKPGFSIFDETD------ 113
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
VK + TD++ Q D
Sbjct: 114 -------------VKALMTDIM------------------------------QKEYSGDD 130
Query: 410 GMDVAK---ASGKT----PAEF----RKIGDEIGAAILENYNGILRSCNALDYHDLISCS 458
G+D K S K PAE R ++ A + +Y L++ NA+D+ DLI
Sbjct: 131 GVDEIKNMIGSWKNDLILPAEALENARNPKEQTAAIVYTHYQRTLKAYNAVDFDDLILMP 190
Query: 459 VKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSF 517
VKL ++ +++Q+ + ++VDE+QDT+A QY L+++L S N+ T+VGDDDQSI+++
Sbjct: 191 VKLFQEHADILEKWQNKVRYLLVDEYQDTNASQYLLVKLLIGSRNQFTVVGDDDQSIYAW 250
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GA + D+ + K + L +NYRST I+ A+ LI +N + K + +D HG
Sbjct: 251 RGARPENLMLLKDDYPSLKVVMLEQNYRSTSRILRCANVLISNNPHAFE-KQLWSDMGHG 309
Query: 578 SKIIIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
+I + C NEDA+ + +I L ++ P Y ILYR K+ + +
Sbjct: 310 DEIRVIRCRNEDAEAERVAMEILTLHLRTDRP-----YSDFVILYRGNYQAKLIELKLQH 364
Query: 636 RKIPFNIHGV-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
++P+ + G +F+ ++ V+ ++A R + DD + RV + +E ++ +
Sbjct: 365 HQVPYRLSGGNSFFGRQEVKDLMAYFRLLVNPDDDNAFLRVIN---VPRREIGSTTLEKL 421
Query: 695 DKISTIRKCSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI 753
+T RK S +A +I G + F +L R + + V
Sbjct: 422 GNYATGRKVSMYAATDEIGLGEHLDSRF-----------------TDRLQRFKRWMDGVR 464
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
A P L + V+D D L +++ Y +++V F +
Sbjct: 465 QQCAQNDPIAAL--RSMVMDIDYENWLRQNSSSEKAADYRMSNVW------FLIEALKNT 516
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+++D++G + + +A I + R+ + + D V + T+H SKGLE+ VF+
Sbjct: 517 LEKDEEGGMTIEEA-IGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGME 575
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSR 930
E +P + ++EEERRL YV +TRAR+ L + + + PSR
Sbjct: 576 EEILPHRSSI------EADTIEEERRLAYVGITRARQTLAFTFAAKRKQYGEIIDCSPSR 629
Query: 931 FLKEIP 936
FL E+P
Sbjct: 630 FLDELP 635
>gi|195978018|ref|YP_002123262.1| ATP-dependent DNA helicase UvrD [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|195974723|gb|ACG62249.1| ATP-dependent DNA helicase UvrD/PcrA [Streptococcus equi subsp.
zooepidemicus MGCS10565]
Length = 765
Score = 222 bits (566), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 209/743 (28%), Positives = 333/743 (44%), Gaps = 142/743 (19%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LDGMNDKQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R ++ K+ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMRER--ALALSPATKDTLIATFHSMCVRILRREADHIGYNRNFTIVDPGEQR---- 117
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R+ L + S + L +E
Sbjct: 118 -----------TLMKRI-VKALNLDPKKWSERSILATI------SNAKNDLLDERAYELG 159
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D+ + A + Y LR A+D+ DLI +++L P+V
Sbjct: 160 ASDLYS--------------QTVARCYKAYQEELRRSEAMDFDDLIMMTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+ +LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 AYYQQRYQYIHVDEYQDTNHAQYQLVTLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + + + L NYRST+ I++AA+ +IQHN R + K + T N+ G +I+ ++E
Sbjct: 266 EKDYPDARVVLLEENYRSTKKILQAANEVIQHNRHR-RPKKLWTQNADGEQIVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASIC-----SYGSIAILYRRQVSGKVFQTAFRERKIPFN-I 642
+ F+ I +++C S+ A+LYR + + A + IP+ +
Sbjct: 325 RDEAVFVASTI--------SNMCLELGKSFKDFAVLYRTNAQSRTIEEALLKSNIPYTMV 376
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKIS 698
G FY +K +R +IA L D+ + R+ E K+ V +D + + +
Sbjct: 377 GGTKFYSRKEIRDVIAYLTVVANPSDNISFERIV-------NEPKRGVGPGTLDKLRQFA 429
Query: 699 TIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
++ S + AA + + + G ++ L + + +L SI+A+ +
Sbjct: 430 YGQEQSLLEAASSLEQSPLKGKAAQAMLALASLLSDLRADLDRL-----SITALAEA--- 481
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTK-----FTAAKEEGN 813
LLE+ +D +L N L S Q + ++ +FLS +A ++E
Sbjct: 482 ------LLEKSGYLD-----MLRVQNTLES--QARIENIEEFLSVTKSFDDVSAQQQEHE 528
Query: 814 VDQDKKG-CINVLKAFIDYISERETEHFRTQRHDNENS----VTLTTIHQSKGLEWDIVF 868
D+ G +N L D D+ N+ VTL T+H +KGLE+ +VF
Sbjct: 529 AGIDRLGRFLNDLALIAD--------------SDDGNAETAEVTLMTLHAAKGLEFPVVF 574
Query: 869 VAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-- 926
+ E PL E +EEERRL YV +TRA + LF + +AN + L
Sbjct: 575 LIGMEEGVFPLAR-----AAEDQDELEEERRLAYVGITRAEECLF----LTNANTRTLFG 625
Query: 927 -----QPSRFLKEIPHHLREVQA 944
+P+RFLKE+ +L Q
Sbjct: 626 KSSYNRPTRFLKEMSENLLSFQG 648
>gi|422666052|ref|ZP_16725922.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. aptata
str. DSM 50252]
gi|330976482|gb|EGH76534.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 669
Score = 222 bits (566), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 192/726 (26%), Positives = 326/726 (44%), Gaps = 125/726 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+AMTFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ + + LT+STFH+ L + R +L F I+
Sbjct: 60 AAREMKERVGTLLRGSEGRGLTVSTFHNLGLNIIRKEHTRLGYKPGFSIFDETD------ 113
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
VK + TD++ Q D
Sbjct: 114 -------------VKALMTDIM------------------------------QKEYSGDD 130
Query: 410 GMDVAK---ASGKT----PAEF----RKIGDEIGAAILENYNGILRSCNALDYHDLISCS 458
G+D K S K PAE R ++ A + +Y L++ NA+D+ DLI
Sbjct: 131 GVDEIKNMIGSWKNDLILPAEALENARNPKEQTAAIVYTHYQRTLKAYNAVDFDDLILLP 190
Query: 459 VKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSF 517
VKL ++ +++Q+ + ++VDE+QDT+A QY L+++L + ++ T+VGDDDQSI+++
Sbjct: 191 VKLFQEHADILEKWQNKVRYLLVDEYQDTNASQYLLVKLLIGTRHQFTVVGDDDQSIYAW 250
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GA + D+ + K + L +NYRSTR I+ A+ LI +N + K + ++ HG
Sbjct: 251 RGARPENLMLLKDDYPSLKVVMLEQNYRSTRRILRCANVLISNNPHAFE-KQLWSEMGHG 309
Query: 578 SKIIIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
+I + C NEDA+ + +I L ++ P Y AILYR K+ + +
Sbjct: 310 DEIRVIRCRNEDAEAERVAMEILTLHLRTDRP-----YSDFAILYRGNYQAKLIELKLQH 364
Query: 636 RKIPFNIHGV-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
++P+ + G +F+ ++ V+ ++A R + DD + RV + +E ++ +
Sbjct: 365 HQVPYRLSGGNSFFGRQEVKDLMAYFRLLVNPDDDNAFLRVIN---VPRREIGSTTLEKL 421
Query: 695 DKISTIRKCSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI 753
+T RK S +A +I G + F +L R + + V
Sbjct: 422 GNYATERKVSMYAATDEIGLGEHLDSRF-----------------TDRLQRFKRWMDGVR 464
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
A P L + V+D D L +++ Y +++V F +
Sbjct: 465 QQCAQNDPIAAL--RSMVMDIDYENWLRQNSSSEKAADYRMSNVW------FLIEALKNT 516
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+++D++G + + +A I + R+ + + D V + T+H SKGLE+ VF+
Sbjct: 517 LEKDEEGGMTIEEA-IGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGME 575
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSR 930
E +P + ++EEERRL YV +TRAR+ L + + + PSR
Sbjct: 576 EEILPHRSSI------EADTIEEERRLAYVGITRARQTLAFTFAAKRKQYGEIIDCAPSR 629
Query: 931 FLKEIP 936
FL E+P
Sbjct: 630 FLDELP 635
>gi|381182456|ref|ZP_09891262.1| ATP-dependent DNA helicase [Listeriaceae bacterium TTU M1-001]
gi|380317659|gb|EIA20972.1| ATP-dependent DNA helicase [Listeriaceae bacterium TTU M1-001]
Length = 742
Score = 222 bits (566), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 217/733 (29%), Positives = 342/733 (46%), Gaps = 103/733 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
++ LN +Q + A PLLI+AG GSGK ++P NILA+TFT
Sbjct: 9 VKGLNSEQ-KRAVQTTEGPLLIMAGAGSGKTRVLTHRIAYLIKEREVNPYNILAITFTNK 67
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ R+ ++G A+ + ISTFHS +++ R +++ F I Q I
Sbjct: 68 AAREMKARVTGLLG-GVAESIWISTFHSMCVRILRRDIDRIGYERNFTILDSSDQLSVI- 125
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ IL K I + G RA F+ N + S+S+ K N+
Sbjct: 126 --------KGILKDKNIDSKKYEPRGP----RAXFFINNRGILASISNAK----NELMDA 169
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ +ASG D++ A + E Y L+ ALD+ DLI +++L PEV
Sbjct: 170 ALYKREASGYY--------DKMVAEVYEAYEKKLKKNQALDFDDLIMVTIQLFERVPEVL 221
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ ++ I VDE+QDT+ QY L+++LA+ R + +VGD DQSI+ + GADIS SF
Sbjct: 222 EYYQRKFQYIHVDEYQDTNHAQYLLVKLLAAKLRNLCVVGDSDQSIYGWRGADISNILSF 281
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K I L NYRST+ I+EAA+ +I++N R + KN+ T N G+KI + E
Sbjct: 282 EKDYPNAKMIMLEENYRSTKRILEAANHVIENNRNR-KPKNLWTSNDEGAKIFYHKALTE 340
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ ++++ KI E +N + + AILYR +V + F + + + + G F
Sbjct: 341 KEEASYVVSKIQEEVANKNRPLSDF---AILYRTNAQSRVMEEFFMKSNMAYTMVGGTKF 397
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y +K ++ I+A LR DD R+ + ++ +D + +T +
Sbjct: 398 YDRKEIKDILAYLRLISNNEDDISLARIIN---VPKRGVGAGSLDKMANTATAYDLTLFE 454
Query: 708 AACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLE 767
I A I + QL + ++ + + + SV +V Q +LE
Sbjct: 455 VLNRIELAGIPAKTSK-QLVEFHDLIRGFSQMQEFL-----------SVTELVEQ--VLE 500
Query: 768 QRAVVDFDGGKLLNEDNDLRSV-LQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLK 826
+ D L NE R++ Q L ++ +FLS KE + K + L
Sbjct: 501 KTGYRDM----LKNE----RTIEAQTRLENIDEFLSVTQNFEKE-----SEDKSLLAFLT 547
Query: 827 --AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFN 884
A + + + E + +T +VTL T+H +KGLE+ +VF+ E P
Sbjct: 548 DLALVADVDQLEDDLEQT------GAVTLMTLHSAKGLEFPVVFLVGLEEGIFPHSRALF 601
Query: 885 GAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQPSRFLKEIPH 937
+EEERRL YV +TRA ++LFI L+ AN + SRF+ EIP
Sbjct: 602 EE-----DEMEEERRLAYVGITRAEEELFITSAYSRMLFGRSTANAE----SRFIGEIPQ 652
Query: 938 HLREVQAEQSVQD 950
L E E +++
Sbjct: 653 DLLETGNENKLKE 665
>gi|418107518|ref|ZP_12744556.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA41410]
gi|418159746|ref|ZP_12796445.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA17227]
gi|418221158|ref|ZP_12847812.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47751]
gi|353779701|gb|EHD60165.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA41410]
gi|353821479|gb|EHE01655.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA17227]
gi|353876081|gb|EHE55931.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47751]
Length = 773
Score = 222 bits (566), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 209/739 (28%), Positives = 335/739 (45%), Gaps = 135/739 (18%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLMK 121
Query: 350 EAVRLLE------NEKILV--VKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
++ L NE+ ++ + D++
Sbjct: 122 RILKQLNLDPKKWNERTILGTISNAKNDLID----------------------------- 152
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
DVA A A+ + +I A Y LR ++D+ DLI +++L
Sbjct: 153 ----------DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRL 197
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGA 520
P+V YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GA
Sbjct: 198 FDQNPDVLTYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGA 257
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
D+ F KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I
Sbjct: 258 DMQNILDFEKDYPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQI 316
Query: 581 IIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKI 638
+ +E + F+ I L + N + A+LYR + + A + I
Sbjct: 317 VYYRADDELDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNI 371
Query: 639 PFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VID 692
P+ + G FY +K +R IIA L D+ + R+ E KR ++
Sbjct: 372 PYTMVGGTKFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGLGTVE 423
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV 752
I + ++ S + A+ +I + I G +S +L E + L SI+ +
Sbjct: 424 KIRDFANLQNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITEL 478
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
+ SV LE+ VD +LN L S + + ++ +FLS +
Sbjct: 479 VESV---------LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTT 521
Query: 813 NVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKA 872
+V +++ G ++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+
Sbjct: 522 DVTEEETG-LDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGM 577
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL------ 926
E PL E +EEERRL YV +TRA K ILY + +AN +LL
Sbjct: 578 EENVFPLSR-----ATEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNY 628
Query: 927 -QPSRFLKEIPHHLREVQA 944
+P+RF+ EI L E Q
Sbjct: 629 NRPTRFINEISSDLLEYQG 647
>gi|418189337|ref|ZP_12825852.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47373]
gi|353856479|gb|EHE36448.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47373]
Length = 763
Score = 222 bits (566), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 209/739 (28%), Positives = 335/739 (45%), Gaps = 135/739 (18%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLMK 121
Query: 350 EAVRLLE------NEKILV--VKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
++ L NE+ ++ + D++
Sbjct: 122 RILKQLNLDPKKWNERTILGTISNAKNDLID----------------------------- 152
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
DVA A A+ + +I A Y LR ++D+ DLI +++L
Sbjct: 153 ----------DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRL 197
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGA 520
P+V YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GA
Sbjct: 198 FDQNPDVLTYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGA 257
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
D+ F KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I
Sbjct: 258 DMQNILDFEKDYPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQI 316
Query: 581 IIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKI 638
+ +E + F+ I L + N + A+LYR + + A + I
Sbjct: 317 VYYRADDELDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNI 371
Query: 639 PFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VID 692
P+ + G FY +K +R IIA L D+ + R+ E KR ++
Sbjct: 372 PYTMVGGTKFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGLGTVE 423
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV 752
I + ++ S + A+ +I + I G +S +L E + L SI+ +
Sbjct: 424 KIRDFANLQNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITEL 478
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
+ SV LE+ VD +LN L S + + ++ +FLS +
Sbjct: 479 VESV---------LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTT 521
Query: 813 NVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKA 872
+V +++ G ++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+
Sbjct: 522 DVTEEETG-LDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGM 577
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL------ 926
E PL E +EEERRL YV +TRA K ILY + +AN +LL
Sbjct: 578 EENVFPLSR-----ATEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNY 628
Query: 927 -QPSRFLKEIPHHLREVQA 944
+P+RF+ EI L E Q
Sbjct: 629 NRPTRFINEISSDLLEYQG 647
>gi|237709818|ref|ZP_04540299.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|229455911|gb|EEO61632.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
Length = 796
Score = 222 bits (566), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 207/736 (28%), Positives = 347/736 (47%), Gaps = 111/736 (15%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFT 287
+ YL+ LN+ Q +A + P L++AG GSGK G +P +ILA+TFT
Sbjct: 2 TNYLEELNESQRDAVLYN-EGPSLVIAGAGSGKTRVLTYKIAYLLEQGYTPWSILALTFT 60
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM++RI VG A+ L + TFHS ++ R A+ + +S F IY +
Sbjct: 61 NKAAREMKERIARQVGD-QARYLWMGTFHSIFSRILRCEAQVIGFSSNFTIYDSSDSKSL 119
Query: 348 IIEAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
I V+ ++ ++K I + H + A ++ NA L+ QY+
Sbjct: 120 IKSIVKEMQLDDKTYKSGSIQARISNAKNHLVFPDA--YVSNAELY---------QYD-- 166
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
+ K PA I Y R +A+D+ DL+ + L P
Sbjct: 167 ---------LNAKVPAT---------RDIYRQYWERCRQSDAMDFDDLLLYTYMLFRDHP 208
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSL-LQILASHNRITIVGDDDQSIFSFNGADISGF 525
E+ ++Y + ++ ++VDE+QDT+ Q+S+ LQ+ H R+ +VGDD QSI+SF GA+I
Sbjct: 209 EICRKYAEQFRYVLVDEYQDTNFAQHSIVLQLTQEHQRVCVVGDDAQSIYSFRGANIDNI 268
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
F + + K +L +NYRST+ IV AA+SLI+ N ++ + K V ++ + G I +
Sbjct: 269 LKFTQLYKGAKLFKLEQNYRSTQTIVCAANSLIEKNSEQIK-KEVFSEKAKGEPIGVFNA 327
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-G 644
+++ + + ++I++ S SY AILYR ++F+ A R+R +P+ I+ G
Sbjct: 328 YSDVEEGEIVANQIVKLRSR---EHYSYNDFAILYRTNAQSRIFEEALRKRSLPYKIYGG 384
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCS 704
++FY++K ++ +I+ R + D+ ++RV R I +T+ K
Sbjct: 385 LSFYQRKEIKDVISYFRLAVNPNDEEAFKRVLNY--------PARGIGD----TTLNKVI 432
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKY 764
+A + + L + + L+ +LV+ S +P+K
Sbjct: 433 DAAAQHHVSLWMVLEEPLAYGLNINKGMHTKLQGFRELVK----------SFIVEIPKKN 482
Query: 765 LLEQRAVVDFDGGKLLNE---DNDLRSV-----LQYLLADVTDFLSTKFTAAKEEGNVDQ 816
E A++ G ++NE ND ++ ++ L+ + DF + + +EEGN
Sbjct: 483 AYELGAMIVRQSG-IMNEIYQSNDPENLSRQENIEELINGMHDFCAIR----EEEGNE-- 535
Query: 817 DKKGCINVLKAFIDYISERE--TEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
N+L D++SE T+ + D E + L TIH +KGLE+ VFV E
Sbjct: 536 ------NIL--LTDFLSEVSLLTDQDNEKEEDAE-KIILMTIHSAKGLEFKNVFVVGLEE 586
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSRF 931
P N +EEERRL YVA+TRA + ++ + + ++ PSRF
Sbjct: 587 NLFPSALSLNSY-----KELEEERRLFYVAITRAEEHCYLSFAKSRFKYGKMEFSSPSRF 641
Query: 932 LKEIP-HHLREVQAEQ 946
LK+I H L+ Q EQ
Sbjct: 642 LKDIDVHFLKLPQEEQ 657
>gi|148998353|ref|ZP_01825795.1| methionine aminopeptidase [Streptococcus pneumoniae SP11-BS70]
gi|307067730|ref|YP_003876696.1| superfamily I DNA and RNA helicase [Streptococcus pneumoniae AP200]
gi|419471036|ref|ZP_14010895.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA07914]
gi|419503893|ref|ZP_14043562.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47760]
gi|421238707|ref|ZP_15695274.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2071247]
gi|421244901|ref|ZP_15701402.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2081685]
gi|421314256|ref|ZP_15764846.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47562]
gi|147755750|gb|EDK62795.1| methionine aminopeptidase [Streptococcus pneumoniae SP11-BS70]
gi|306409267|gb|ADM84694.1| Superfamily I DNA and RNA helicase [Streptococcus pneumoniae AP200]
gi|379545752|gb|EHZ10891.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA07914]
gi|379606570|gb|EHZ71317.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47760]
gi|395601970|gb|EJG62115.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2071247]
gi|395609401|gb|EJG69488.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2081685]
gi|395914756|gb|EJH25600.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47562]
Length = 763
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 214/731 (29%), Positives = 335/731 (45%), Gaps = 119/731 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ +E
Sbjct: 266 EKDYPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRADDE 324
Query: 589 DAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
+ F+ I L + N + A+LYR + + A + IP+ + G
Sbjct: 325 LDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGT 379
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTI 700
FY +K +R IIA L D+ + R+ E KR ++ I + +
Sbjct: 380 KFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGLGTVEKIRDFANL 431
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
+ S + A+ +I + I G +S +L E + L SI+ ++ SV
Sbjct: 432 QNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITELVESV---- 482
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
LE+ VD +LN L S + + ++ +FLS + +V +++ G
Sbjct: 483 -----LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTTDVTEEETG 529
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 530 -LDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGMEENVFPLS 585
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLK 933
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 586 R-----ATEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFIN 636
Query: 934 EIPHHLREVQA 944
EI L E Q
Sbjct: 637 EISSDLLEYQG 647
>gi|323493181|ref|ZP_08098311.1| ATP-dependent DNA helicase Rep [Vibrio brasiliensis LMG 20546]
gi|323312528|gb|EGA65662.1| ATP-dependent DNA helicase Rep [Vibrio brasiliensis LMG 20546]
Length = 672
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 198/720 (27%), Positives = 347/720 (48%), Gaps = 99/720 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPNQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G +GK AK L +STFH+ L + + + L + F ++
Sbjct: 62 EMKERVGQTLGKQEAKGLMVSTFHTLGLNIIKREYKALGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R L ++S++K D +
Sbjct: 110 ---DQDQMALLKELTEKQL--DGDKDLLR--------QLLSTISNWK--------NDMLT 148
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
+A + E + ++ A E Y +++ NALD+ DLIS V LL T EV Q +
Sbjct: 149 PEQAKAQAKGEQQ----QLFAFCFEMYQKQMKAYNALDFDDLISLPVLLLRTNEEVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQ-ILASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L++ I+ R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QNRIRYLLVDEYQDTNTSQYDLVKLIVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F + + I+L +NYRST I+ AA+ LI +N K++ ++ G K+ + NED +
Sbjct: 265 FPSLRLIKLEQNYRSTSRILRAANILIANN-PHVYDKSLFSEIPDGEKLKVLLAKNEDHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +++ H + Y A+LYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AERVTGELIAHKF---LNRTEYKDYAVLYRGNHQSRLIEKSLMQNRVPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ +E ++ + + +R S A+
Sbjct: 381 AEIKDIMAYLRILVNPDDDNAFLRIVNT---PRREIGPVTLEKLGSYANMRGKSLFEAS- 436
Query: 711 DIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRA 770
F + T L R+ L I+ R ++ AV + V ++ + +L E +
Sbjct: 437 --FEMGLEQTLSGRGLENLRRFTGWLVKIADQAERGDTVEAVRSLVRDINYEDWLYETSS 494
Query: 771 VVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAFI 829
+ + +V+D S + A EG N DQ++K +K +
Sbjct: 495 SP---------------KAAEMRMKNVSDLYS--WIVADLEGDNYDQEEKS----IKEVV 533
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
++ R+ R + D+ ++V L T+H SKGLE+ V++ + E +P H+ +++E
Sbjct: 534 QRLTLRDMME-RGEEDDDSDAVQLMTLHASKGLEFPYVYLIGSEEGILP--HQ--TSIDE 588
Query: 890 KGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAEQ 946
+VEEERRL+YV +TRA+++L F + +L++P SRFL E+P +V+ EQ
Sbjct: 589 --DNVEEERRLMYVGITRAQRELTFTMCKERRQFGELIKPTQSRFLDELPFD--DVEWEQ 644
>gi|293609015|ref|ZP_06691318.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|375133767|ref|YP_004994417.1| ATP-dependent DNA helicase [Acinetobacter calcoaceticus PHEA-2]
gi|292829588|gb|EFF87950.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325121212|gb|ADY80735.1| ATP-dependent DNA helicase [Acinetobacter calcoaceticus PHEA-2]
Length = 679
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 199/720 (27%), Positives = 334/720 (46%), Gaps = 112/720 (15%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAAS 292
LN++Q E A PLL++AG GSGK I I AMTFT AA
Sbjct: 7 LNNKQ-EEAMKYTQGPLLVLAGAGSGKTSVITRKIAYLVQHCRIPAHRITAMTFTNKAAR 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ ++ + AK L++STFH+F L L R + L + F +I++A
Sbjct: 66 EMKERVTKLLSREEAKGLSVSTFHTFGLNLLRLELKNLPLKANF----------SILDAD 115
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM- 411
KRI D++ D G L A +S +K D +
Sbjct: 116 D---------CKRILMDLMHRDNLSGAESKELI---AKAMKKISDWK--------NDLIL 155
Query: 412 -DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
+ A ++ +TP + + A + + Y LR+ NA+D+ DLI +LL EV
Sbjct: 156 PEQAHSTCETPEDVQ------FAHLYQLYERNLRAYNAVDFDDLIVMPTRLLQENAEVRD 209
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFR 529
++Q+ + ++VDE+QDT+ QY L+++L + T VGDDDQSI+++ GA +
Sbjct: 210 KWQNRVRYLLVDEYQDTNTAQYILVKLLVGVMGQFTAVGDDDQSIYAWRGAKPENMALLK 269
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
+DF N I+L +NYRST I++AA+ +IQ+N K + +D HG I I C N+D
Sbjct: 270 QDFPNLHIIKLEQNYRSTSRILKAANCVIQNNPHIFD-KKLWSDKGHGEVIRIITCRNDD 328
Query: 590 AQCAFIIDKILEHA-SNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAF 647
+ ++ +L H NG ++ A+LYR +V +T R+ +IP+ + G +F
Sbjct: 329 DEAERVVKDLLTHKLMNGK----NWKDYAVLYRGNFQARVLETQLRQMQIPYKLSGGTSF 384
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI-----DHIDKISTIRK 702
+ + ++ +++ LR + DD + R+ KR I + + S
Sbjct: 385 FARAEIKDVMSYLRLIINPEDDSAFLRIINT--------PKRAIGPVTLEKLGLFSQENN 436
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ D + + +QL + + T +L+ + + V +
Sbjct: 437 LSLLGASADQRLSMVLPKKAETQLHEFADFIATF--TRELLEDDEPVPKVRQMMNEAGYM 494
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
Y+ EQ A + KL N +N L + +Q L+ D D+K
Sbjct: 495 DYVREQSATPAQEKSKLDNIEN-LFTSIQNLINRAEDV----------------DEKNIE 537
Query: 823 NVLKAFI--DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
+V++ + D + +++ E ++ + V L T+H +KGLE+ V++ E +P
Sbjct: 538 SVIRKLVLLDLLEQQQEE-------EDTDKVNLLTLHAAKGLEFPYVYIMGLEEELLP-- 588
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDAN---WQLLQPSRFLKEIPH 937
H+ + A ++EEERRL+YV +TRAR+ L + N + + PSRFL E+P
Sbjct: 589 HKNSIA----AETIEEERRLMYVGITRARQGLTLTLAEQRKNGGQMKQMTPSRFLDELPQ 644
>gi|307706682|ref|ZP_07643488.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK321]
gi|307617926|gb|EFN97087.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK321]
Length = 763
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 208/732 (28%), Positives = 340/732 (46%), Gaps = 121/732 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R + ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYGL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDTGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R+ + ++S+ K D
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERS--------ILGTISNAK--------ND 149
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+D + + + +I + A Y LR ++D+ DLI +++L P+V
Sbjct: 150 LIDDVAYAAQAGDMYTQIVSQCYTA----YQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +IQ+N R + KN+ T N+ G +I+ ++E
Sbjct: 266 EKDYPQAKVVLLEENYRSTKTILQAANEVIQNNKNR-RPKNLWTQNADGEQIVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+ I E G + + A+LYR + + A + IP+ + G F
Sbjct: 325 LDEAIFVARTIDEL---GRSQNFLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRK 702
Y +K +R IIA L D+ + R+ E KR ++ I + ++
Sbjct: 382 YSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANMQN 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ +I + I G +S +L E + +L +I+ ++ +V
Sbjct: 434 MSMLDASANIMLSGIKGKVAQSIWDFANMILDLREQLDQL-----NITDLVEAV------ 482
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
LE+ VD +LN L S + + ++ +FLS T ++ + +++ +
Sbjct: 483 ---LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSV--TKNFDDTSDGPEEETGL 530
Query: 823 NVLKAFID---YISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
+ L F++ I++ ++ T + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 531 DKLSRFLNDLALIADTDSGSQET------SEVTLMTLHAAKGLEFPVVFLIGMEENVFPL 584
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFL 932
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 585 SR-----AAEDQDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFI 635
Query: 933 KEIPHHLREVQA 944
EI L E Q
Sbjct: 636 NEISSDLLEYQG 647
>gi|16800937|ref|NP_471205.1| ATP-dependent DNA helicase [Listeria innocua Clip11262]
gi|16414372|emb|CAC97101.1| ATP-dependent DNA helicase [Listeria innocua Clip11262]
Length = 731
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 219/733 (29%), Positives = 346/733 (47%), Gaps = 117/733 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q A PLLI+AG GSGK G++P NILA+TFT
Sbjct: 7 VDGLNPEQ-RKAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ RIG+++G A+ + ISTFHS +++ R +++ F I G + ++I
Sbjct: 66 AAREMKSRIGNLMG-GEAESIWISTFHSMCVRILRRDIDRIGYERNFTIL-DGSDQLSVI 123
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ IL K + G + S+S+ K N+
Sbjct: 124 KG--------ILKEKNVDPKKFEPRG---------------ILASISNAK----NELITA 156
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ +ASG D++ + E Y L+ ALD+ DLI +++L P+V
Sbjct: 157 SEYIKEASG--------FYDKMVGEVYEKYEKKLKKNQALDFDDLIMVTIQLFERVPDVL 208
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ ++ I VDE+QDT+ QY L+++LAS + +VGD DQSI+ + GADIS SF
Sbjct: 209 EYYQRKFQYIHVDEYQDTNHAQYLLVKLLASRFKNLCVVGDSDQSIYGWRGADISNIMSF 268
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + K I L NYRST+ I+EAA+ +I++N R + KN+ T N+ G KI + E
Sbjct: 269 EKDYPSAKTILLEENYRSTKRILEAANRVIENNGNR-KPKNLWTSNAEGKKIFYHKALTE 327
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ A+++ KI E +N + + AILYR +V + F + + + + G F
Sbjct: 328 KEEAAYVVMKIQEEVNNSSRPLSDF---AILYRTNAQSRVMEEYFMKSNMAYTMVGGTKF 384
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y +K ++ I+A LR DD R+ KR + T+ K + ++
Sbjct: 385 YDRKEIKDILAYLRLISNNEDDISLTRIINV--------PKRGVGP----GTLEKLNNVA 432
Query: 708 AACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLE 767
AA D+ ++ + + ++ K+ L LVR + + SV +V + +LE
Sbjct: 433 AAYDLSLFEVLNRIELAGISA--KISKDLVAFHDLVRGFTQMQDFL-SVTELVEE--ILE 487
Query: 768 Q---RAVVDFDGGKLLNEDNDLRSV-LQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
+ RA+ L NE R++ Q L ++ +FLS KE + DK
Sbjct: 488 KTGYRAM-------LKNE----RTIEAQTRLENIDEFLSVTQNFEKE----NDDK----- 527
Query: 824 VLKAFI-DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
L AF+ D + + + +VTL T+H +KGLE+ +VF+ E P
Sbjct: 528 TLLAFLTDLALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFP---- 583
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQPSRFLKEI 935
+ + +EEERRL YV +TRA ++LF+ LY +N Q SRF+ EI
Sbjct: 584 -HSRAIYEEEEMEEERRLAYVGITRAEEELFLTSAYSRMLYGRPSSN----QESRFIGEI 638
Query: 936 PHHLREVQAEQSV 948
P L E+ E +
Sbjct: 639 PRDLLELGNENKL 651
>gi|15903039|ref|NP_358589.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae R6]
gi|116515714|ref|YP_816449.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae D39]
gi|418146313|ref|ZP_12783094.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA13637]
gi|418193722|ref|ZP_12830214.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47439]
gi|419493260|ref|ZP_14032986.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47210]
gi|419495381|ref|ZP_14035099.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47461]
gi|421234090|ref|ZP_15690711.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2061617]
gi|421249395|ref|ZP_15705855.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2082239]
gi|15458610|gb|AAK99799.1| ATP-dependent DNA helicase [Streptococcus pneumoniae R6]
gi|116076290|gb|ABJ54010.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae D39]
gi|353814609|gb|EHD94834.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA13637]
gi|353859702|gb|EHE39652.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47439]
gi|379593435|gb|EHZ58247.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47210]
gi|379595463|gb|EHZ60271.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47461]
gi|395601846|gb|EJG61992.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2061617]
gi|395614016|gb|EJG74038.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2082239]
Length = 763
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 214/731 (29%), Positives = 335/731 (45%), Gaps = 119/731 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ +E
Sbjct: 266 EKDYPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRADDE 324
Query: 589 DAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
+ F+ I L + N + A+LYR + + A + IP+ + G
Sbjct: 325 LDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGT 379
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTI 700
FY +K +R IIA L D+ + R+ E KR ++ I + +
Sbjct: 380 KFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGLGTVEKIRDFANL 431
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
+ S + A+ +I + I G +S +L E + L SI+ ++ SV
Sbjct: 432 QNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITELVESV---- 482
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
LE+ VD +LN L S + + ++ +FLS + +V +++ G
Sbjct: 483 -----LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTTDVTEEETG 529
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 530 -LDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGMEENVFPLS 585
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLK 933
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 586 R-----ATEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFIN 636
Query: 934 EIPHHLREVQA 944
EI L E Q
Sbjct: 637 EISSDLLEYQG 647
>gi|418121148|ref|ZP_12758094.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA44194]
gi|419490997|ref|ZP_14030737.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47179]
gi|419532294|ref|ZP_14071810.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47794]
gi|421275850|ref|ZP_15726677.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA52612]
gi|353793975|gb|EHD74334.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA44194]
gi|379594576|gb|EHZ59386.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47179]
gi|379606078|gb|EHZ70827.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47794]
gi|395872270|gb|EJG83369.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA52612]
Length = 763
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 214/731 (29%), Positives = 335/731 (45%), Gaps = 119/731 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ +E
Sbjct: 266 EKDYPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRADDE 324
Query: 589 DAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
+ F+ I L + N + A+LYR + + A + IP+ + G
Sbjct: 325 LDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGT 379
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTI 700
FY +K +R IIA L D+ + R+ E KR ++ I + +
Sbjct: 380 KFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGLGTVEKIRDFANL 431
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
+ S + A+ +I + I G +S +L E + L SI+ ++ SV
Sbjct: 432 QNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITELVESV---- 482
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
LE+ VD +LN L S + + ++ +FLS + +V +++ G
Sbjct: 483 -----LEKTGYVD-----ILNTQATLESKAR--VENIEEFLSVT-KNFDDTTDVTEEETG 529
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 530 -LDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGMEENVFPLS 585
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLK 933
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 586 R-----ATEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFIN 636
Query: 934 EIPHHLREVQA 944
EI L E Q
Sbjct: 637 EISSDLLEYQG 647
>gi|408789987|ref|ZP_11201621.1| ATP-dependent DNA helicase UvrD, PcrA [Lactobacillus florum 2F]
gi|408520726|gb|EKK20760.1| ATP-dependent DNA helicase UvrD, PcrA [Lactobacillus florum 2F]
Length = 753
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 193/735 (26%), Positives = 336/735 (45%), Gaps = 116/735 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+++ND+Q EA ++ PLLI+AG GSGK + P ILA+TFT
Sbjct: 7 LKNMNDKQQEA-VQQVTGPLLIMAGAGSGKTRVLTHRIAYLIEEKHVLPWQILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ ++ + ++ +STFH+ +++ R + EKL F I G +Q+
Sbjct: 66 AAREMKERVNQLL-EVGGNDVWVSTFHALGVRILRRNIEKLGYHQAFSIAGTSEQK---- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI D L D RA L
Sbjct: 121 -----------TLIKRILHD-LDYDPKKNDPRAIL------------------------G 144
Query: 410 GMDVAKASGKTPAEFRKIGD------EIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
+ AK +TP ++++ D ++ + Y L++ +A+D+ DLI ++L
Sbjct: 145 AISNAKNELQTPTDYQRAHDSDDPFAQVTGEVYREYQKQLQANDAVDFDDLIMLPIQLFE 204
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADI 522
FP+V YQD + I VDE+QDT+ QY L+++LA+ H+ I +VGD DQSI+ + GA++
Sbjct: 205 QFPDVLHYYQDKFHYIHVDEYQDTNEAQYRLVRMLAAKHHNICVVGDADQSIYGWRGANM 264
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
+ F D+ + L +NYRST+ I++AA+ +IQ+N +R + K + T+N G I
Sbjct: 265 NNILDFETDYPDAHVTLLEQNYRSTKKILQAANDVIQNNEER-KPKKLWTENQAGEPITY 323
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN- 641
+E + F++ +I + SY A+LYR ++ + F + IP+
Sbjct: 324 YRAQSERDEIQFVVTRIKAEMAK---HHYSYNDFAVLYRTNAQSRIVEETFLKASIPYTM 380
Query: 642 IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
+ G FY +K + +++ L G D + RV + ++ ++ + + +T +
Sbjct: 381 VGGHRFYERKEIMDVLSYLTLIANGNDSMSFERVIN---VPKRGIGSTSVEKLRQFATDQ 437
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
S ++AA + A + R+ ++ + L+ +++ ++ + +V +
Sbjct: 438 ASSLLAAARNATNANALSSRARNAISGFADTITQLQKVAE----NGDVTTITEAVLDQT- 492
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSV-LQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
YL +A +N+ R L+ L+ DF + A E GN
Sbjct: 493 -GYLKSLKATDSL--------ENEARVANLEEFLSVTQDFDARYHPAESETGN------- 536
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
+D++++ + + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 537 ------QLVDFLADLALVSAQDDVDEEAQQVTLMTLHAAKGLEFPVVFMIGMEENLFPL- 589
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQPSRFLK 933
+ T +EEERRL YV +TRA++KL++ LY M N SRFL
Sbjct: 590 ----SRAADDPTELEEERRLAYVGITRAQQKLYLTNAYGRTLYGRMQNN----PASRFLD 641
Query: 934 EIPHHLREVQAEQSV 948
E+ L + Q
Sbjct: 642 EVSPDLLQTDPGQGT 656
>gi|261213209|ref|ZP_05927492.1| ATP-dependent DNA helicase Rep [Vibrio sp. RC341]
gi|260837627|gb|EEX64321.1| ATP-dependent DNA helicase Rep [Vibrio sp. RC341]
Length = 671
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 206/737 (27%), Positives = 356/737 (48%), Gaps = 97/737 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ +GKA ++ L +STFH+ L + R + L + F ++
Sbjct: 62 EMKERVAQSLGKAESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R +L ++S++K D +
Sbjct: 110 ---DQDQLALLKELTEKQL--DGDKDLLR--------LLLSTISNWK--------NDMLT 148
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
+A E ++ A E Y ++S NALD+ DLI V LL + EV Q +
Sbjct: 149 PPQAKAMAKGE----QQQLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEEVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L+++L R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F + K I+L +NYRST I+ AA+ LI +N Q K + ++ + G K+ + +NED +
Sbjct: 265 FPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQ-KALFSELAEGEKLKVILANNEDHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +I+ H + Y AILYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AERVTAEIIAHKF---LNRTEYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ ++E ++ + + +R S +A+
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PKREIGPATLEKLGSYANMRGKSLFAAS- 436
Query: 711 DIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRA 770
F + L R+ L I+ R S+ AV V ++ + +L E A
Sbjct: 437 --FELGLEQHLAGRGLDNLRRFTEWLVAIADNAERGNSVEAVRALVRDIRYEDWLYETSA 494
Query: 771 VVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAFI 829
+ + +V+D S + A EG N DQ++K LK +
Sbjct: 495 SP---------------KAAEMRMKNVSDLYS--WIVADLEGDNPDQEEK----TLKEVV 533
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
++ R+ R + +D+ ++V L T+H SKGLE+ V++ A E +P H+ +++E
Sbjct: 534 QRLTLRDMME-RGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILP--HQ--TSIDE 588
Query: 890 KGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAEQ 946
+ +VEEERRL+YV +TRA+++L F++ +LL+P SRFL E+P E + ++
Sbjct: 589 E--NVEEERRLMYVGITRAQRELTFMVCKERRQFGELLKPSQSRFLDELPQDGIEWEVKK 646
Query: 947 SVQDQHENIPEGTAQFT 963
Q E + +G A
Sbjct: 647 KPVTQEERMAKGQAHIA 663
>gi|225870395|ref|YP_002746342.1| ATP-dependent DNA helicase [Streptococcus equi subsp. equi 4047]
gi|225699799|emb|CAW93615.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp. equi
4047]
Length = 763
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 209/743 (28%), Positives = 332/743 (44%), Gaps = 142/743 (19%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LDGMNDKQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R ++ K+ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMRER--ALALSPATKDTLIATFHSMCVRILRREADHIGYNRNFTIVDPGEQR---- 117
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R+ L + S + L +E
Sbjct: 118 -----------TLMKRI-VKALNLDPKKWSERSILATI------SNAKNDLLDERAYELG 159
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D+ + A + Y LR A+D+ DLI +++L P+V
Sbjct: 160 ASDLYS--------------QTVARCYKAYQEELRRSEAMDFDDLIMMTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+ +LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 AYYQQRYQYIHVDEYQDTNHAQYQLVTLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + + + L NYRST+ I++AA+ +IQHN R + K + T N+ G +I+ ++E
Sbjct: 266 EKDYPDARVVLLEENYRSTKKILQAANEVIQHNRHR-RPKKLWTQNADGEQIVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASIC-----SYGSIAILYRRQVSGKVFQTAFRERKIPFN-I 642
+ F+ I +++C S+ A+LYR + + A + IP+ +
Sbjct: 325 RDEAVFVASTI--------SNMCLELGKSFKDFAVLYRTNAQSRTIEEALLKSNIPYTMV 376
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKIS 698
G FY +K +R +IA L D+ + R+ E K+ V +D + + +
Sbjct: 377 GGTKFYSRKEIRDVIAYLTVVANPSDNLSFERIV-------NEPKRGVGPGTLDKLRQFA 429
Query: 699 TIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
+ S + AA + + + G ++ L + + +L SI+A+ +
Sbjct: 430 YGQGQSLLEAASSLEQSPLKGKAAQAMLALASLLSDLRADLDQL-----SITALAEA--- 481
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTK-----FTAAKEEGN 813
LLE+ +D +L N L S Q + ++ +FLS +A ++E
Sbjct: 482 ------LLEKTGYLD-----MLRVQNTLES--QARIENIEEFLSVTKSFDDLSAQQQEHE 528
Query: 814 VDQDKKG-CINVLKAFIDYISERETEHFRTQRHDNENS----VTLTTIHQSKGLEWDIVF 868
D+ G +N L D D+ N+ VTL T+H +KGLE+ +VF
Sbjct: 529 AGIDRLGRFLNDLALIAD--------------SDDGNAETAEVTLMTLHAAKGLEFPVVF 574
Query: 869 VAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-- 926
+ E PL E +EEERRL YV +TRA + LF + +AN + L
Sbjct: 575 LIGMEEGVFPLAR-----AAEDQDELEEERRLAYVGITRAEECLF----LTNANTRTLFG 625
Query: 927 -----QPSRFLKEIPHHLREVQA 944
+P+RFLKE+ +L Q
Sbjct: 626 KSSYNRPTRFLKEMSENLLSFQG 648
>gi|225868652|ref|YP_002744600.1| ATP-dependent DNA helicase [Streptococcus equi subsp.
zooepidemicus]
gi|225701928|emb|CAW99448.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp.
zooepidemicus]
Length = 763
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 210/743 (28%), Positives = 331/743 (44%), Gaps = 142/743 (19%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LDGMNDKQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R ++ K+ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMRER--ALALSPATKDTLIATFHSMCVRILRREADHIGYNRNFTIVDPGEQR---- 117
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R+ L + S + L +E
Sbjct: 118 -----------TLMKRI-VKALNLDPKKWSERSILATI------SNAKNDLLDERAYELG 159
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D+ + A + Y LR A+D+ DLI +++L P+V
Sbjct: 160 ASDLYS--------------QTVARCYKAYQEELRRSEAMDFDDLIMMTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+ +LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 AYYQQRYQYIHVDEYQDTNHAQYQLVTLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + K + L NYRST+ I++AA+ +IQHN R + K + T N+ G +I+ ++E
Sbjct: 266 EKDYPDAKVVLLEENYRSTKKILQAANEVIQHNRHR-RPKKLWTQNADGEQIVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASIC-----SYGSIAILYRRQVSGKVFQTAFRERKIPFN-I 642
+ F+ I +++C S+ A+LYR + + A + IP+ +
Sbjct: 325 RDEAVFVASTI--------SNMCLELGKSFKDFAVLYRTNAQSRTIEEALLKSNIPYTMV 376
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKIS 698
G FY +K +R +IA L D+ + R+ E K+ V +D + + +
Sbjct: 377 GGTKFYSRKEIRDVIAYLTVVANPSDNLSFERIV-------NEPKRGVGPGTLDKLRQFA 429
Query: 699 TIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
+ S + AA + + + G ++ L + + +L SI+A+ +
Sbjct: 430 YGQGQSLLEAASSLEQSPLKGKAAQAMLALASLLSDLRADLDQL-----SITALAEA--- 481
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTK-----FTAAKEEGN 813
LLE+ +D +L N L S Q + ++ +FLS +A ++E
Sbjct: 482 ------LLEKTGYLD-----MLRVQNTLES--QARIENIEEFLSVTKSFDDLSAQQQEHE 528
Query: 814 VDQDKKG-CINVLKAFIDYISERETEHFRTQRHDNENS----VTLTTIHQSKGLEWDIVF 868
D+ G +N L D D+ N+ VTL T+H +KGLE+ +VF
Sbjct: 529 AGIDRLGRFLNDLALIAD--------------SDDGNAETAEVTLMTLHAAKGLEFPVVF 574
Query: 869 VAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-- 926
+ E PL E +EEERRL YV +TRA + LF + +AN + L
Sbjct: 575 LIGMEEGVFPLAR-----AAEDQDELEEERRLAYVGITRAEECLF----LTNANTRTLFG 625
Query: 927 -----QPSRFLKEIPHHLREVQA 944
+P+RFLKE+ L Q
Sbjct: 626 KSSYNRPTRFLKEMSEDLLSFQG 648
>gi|253998774|ref|YP_003050837.1| UvrD/REP helicase [Methylovorus glucosetrophus SIP3-4]
gi|253985453|gb|ACT50310.1| UvrD/REP helicase [Methylovorus glucosetrophus SIP3-4]
Length = 665
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 194/718 (27%), Positives = 327/718 (45%), Gaps = 115/718 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN Q EA + PLL++AG GSGK G P I A+TFT
Sbjct: 2 LSKLNSPQREA-VKYLDGPLLVLAGAGSGKTRVITQKIAYLIEQCGYQPREIAAITFTNK 60
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G ++ +AK LTI+TFHS LQ+ R A L +F I
Sbjct: 61 AAREMQERVGHLLEGKSAKGLTIATFHSLGLQMLRQEAALLGYKPQFSILDSS------- 113
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++ KIL D+L T + L S Q ++++
Sbjct: 114 ------DSYKILA------DVLAT-------------TDKQLLRRTQS----QISQWKNA 144
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
++ +A + E A + + Y L++ A+D+ DLI V+L E
Sbjct: 145 FINPDQAKAQADEEL----THAAAKVYQLYQQTLKAYQAVDFDDLIKLPVELFEQHREAL 200
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSF 528
+++Q K +++DE+QDT+A QY L+++L R T VGDDDQ+I+ + GAD+
Sbjct: 201 EKWQRKLKYLLIDEYQDTNACQYKLVKLLTGVEGRFTAVGDDDQAIYGWRGADVENLRQL 260
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
+DF K I+L +NYRST I+ AA+ +I +N K K + ++ G I + +E
Sbjct: 261 TEDFSRLKVIKLEQNYRSTVRILRAANQVIANNPKLFD-KKLWSELGTGDLIQVSAARDE 319
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAF 647
D + ++ K++ H Y AILYR ++F+ R K+P+ + G +F
Sbjct: 320 DHEAESVVMKLMAHKFEHRTQFSDY---AILYRGNHQARIFEQQLRNHKVPYTVSGGQSF 376
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID-HIDKISTIRKCSFI 706
+ K ++ ++A LR + DD P AF+ KK + + ++++ + +
Sbjct: 377 FDKAEIKDLVAYLR-LIANEDDDP------AFIRAATTPKKGIGNTTLERLGEYARDHHL 429
Query: 707 SAACDIFGAKISGTFKRSQLTQGRKVLLT----LEMISKLVRREPSISAVITSVANMVPQ 762
S +F A G F+R + + LLT + + + R+P+ ++ + N +
Sbjct: 430 S----LFAAAFEGDFQRELGARQLEDLLTFCQYINRVQERATRDPA-GEMLNDMLNAIQY 484
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
+ L +D + ++ ++VL D T +L+ K GN D+ +
Sbjct: 485 EAFL-------YDSEEPRAAESKWKNVL-----DFTGWLTKK-------GNEDEKNLLEL 525
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ + + + RE + ++V L+T+H +KGLE+ VF+ E +P
Sbjct: 526 TQMISLMSMLEGRE--------NGEPDAVKLSTLHAAKGLEFGHVFLIGCEEGILPHRES 577
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPH 937
+ +EEERRL+YV +TRA+K L I + + +PSRF+ E+PH
Sbjct: 578 ID------TDRIEEERRLMYVGITRAQKSLNISWCRKRKRAGETESCEPSRFIAELPH 629
>gi|419799043|ref|ZP_14324418.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis F0449]
gi|385698910|gb|EIG29244.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis F0449]
Length = 761
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 211/732 (28%), Positives = 332/732 (45%), Gaps = 121/732 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R + ++ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKERAYQL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+L++ + K +L T + NA + D
Sbjct: 121 --KRILKSLNLDPKKWNERTILGT------------ISNA-----------------KND 149
Query: 410 GMD-VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
+D VA A A+ + +I A E Y LR A+D+ DLI +++L P+V
Sbjct: 150 LIDEVAYA-----AQAGDMYTQIVAKCYEAYQKELRQSEAVDFDDLIMLTLRLFDQHPDV 204
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDS 527
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+
Sbjct: 205 LTYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILD 264
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N G +I+ ++
Sbjct: 265 FEKDYKEAKVVLLEENYRSTKTILQAANDVIKNNRHR-RPKNLWTQNEDGEEIVYYRAND 323
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
E + F+ I E + + A+LYR + + A + IP+ + G
Sbjct: 324 EQDEAVFVAKTIEELSREAG---YKHRDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTK 380
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIR 701
FY +K +R +IA L D+ + R+ E KR +D I + ++
Sbjct: 381 FYSRKEIRDVIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVDKIRDFAQMQ 432
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ S + A+ +I + I G ++ +L E + +L E
Sbjct: 433 ESSLLDASANIMLSGIKGKAAQAIWDFANLILDLRERLDQLTITE--------------- 477
Query: 762 QKYLLEQRAVVDFDG--GKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
L+E+ V+D G L N+ N L S Q + ++ +FLS T +E D +
Sbjct: 478 ---LVEE--VLDKTGYMTALTNQGN-LES--QARIENIQEFLSV--TKNFDENGETVDDE 527
Query: 820 GCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
+ L F++ ++ Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 528 SGVETLSRFLNDLALIADTDDGAQE---TSEVTLMTLHAAKGLEFPVVFLIGMEENVFPL 584
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFL 932
E +EEERRL YV +TRA K LF + +AN +LL +P+RF+
Sbjct: 585 SR-----AAEDPDELEEERRLAYVGITRAEKVLF----LTNANSRLLFGRTSYNRPTRFI 635
Query: 933 KEIPHHLREVQA 944
EI L Q
Sbjct: 636 NEISSDLLTYQG 647
>gi|149003797|ref|ZP_01828629.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
SP14-BS69]
gi|225861053|ref|YP_002742562.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
Taiwan19F-14]
gi|237650760|ref|ZP_04525012.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CCRI
1974]
gi|237822347|ref|ZP_04598192.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CCRI
1974M2]
gi|298230846|ref|ZP_06964527.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae str.
Canada MDR_19F]
gi|298255795|ref|ZP_06979381.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae str.
Canada MDR_19A]
gi|298502897|ref|YP_003724837.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
TCH8431/19A]
gi|303254202|ref|ZP_07340314.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS455]
gi|303259750|ref|ZP_07345725.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP-BS293]
gi|303262925|ref|ZP_07348860.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
SP14-BS292]
gi|303264888|ref|ZP_07350804.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS397]
gi|303266868|ref|ZP_07352746.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS457]
gi|303268905|ref|ZP_07354690.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS458]
gi|387759432|ref|YP_006066410.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae
INV200]
gi|417312647|ref|ZP_12099359.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA04375]
gi|417686569|ref|ZP_12335846.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA41301]
gi|417696297|ref|ZP_12345476.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47368]
gi|418083011|ref|ZP_12720212.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA44288]
gi|418085154|ref|ZP_12722337.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47281]
gi|418093899|ref|ZP_12731028.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA49138]
gi|418100145|ref|ZP_12737233.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 7286-06]
gi|418110076|ref|ZP_12747100.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA49447]
gi|418139590|ref|ZP_12776416.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA13338]
gi|418141657|ref|ZP_12778470.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA13455]
gi|418143930|ref|ZP_12780730.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA13494]
gi|418150557|ref|ZP_12787307.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA14798]
gi|418152807|ref|ZP_12789547.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA16121]
gi|418157445|ref|ZP_12794161.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA16833]
gi|418169682|ref|ZP_12806323.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA19077]
gi|418180496|ref|ZP_12817066.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA41688]
gi|418200013|ref|ZP_12836458.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47976]
gi|418223058|ref|ZP_12849702.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 5185-06]
gi|418227654|ref|ZP_12854273.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 3063-00]
gi|419422934|ref|ZP_13963149.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA43264]
gi|419429241|ref|ZP_13969408.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA11856]
gi|419435954|ref|ZP_13976046.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 8190-05]
gi|419438186|ref|ZP_13978256.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA13499]
gi|419457486|ref|ZP_13997430.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA02254]
gi|419501838|ref|ZP_14041523.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47628]
gi|419520997|ref|ZP_14060593.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA05245]
gi|419528501|ref|ZP_14068043.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA17719]
gi|421273235|ref|ZP_15724075.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SPAR55]
gi|421295786|ref|ZP_15746498.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA58581]
gi|147758243|gb|EDK65245.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
SP14-BS69]
gi|225727044|gb|ACO22895.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
Taiwan19F-14]
gi|298238492|gb|ADI69623.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
TCH8431/19A]
gi|301802021|emb|CBW34750.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae
INV200]
gi|302598873|gb|EFL65907.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS455]
gi|302635902|gb|EFL66402.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
SP14-BS292]
gi|302638955|gb|EFL69415.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP-BS293]
gi|302641523|gb|EFL71885.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS458]
gi|302643566|gb|EFL73835.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS457]
gi|302645576|gb|EFL75807.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS397]
gi|327389355|gb|EGE87700.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA04375]
gi|332075421|gb|EGI85890.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA41301]
gi|332201572|gb|EGJ15642.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47368]
gi|353756924|gb|EHD37523.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA44288]
gi|353758562|gb|EHD39153.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47281]
gi|353765775|gb|EHD46317.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA49138]
gi|353772854|gb|EHD53353.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 7286-06]
gi|353782701|gb|EHD63132.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA49447]
gi|353805908|gb|EHD86182.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA13455]
gi|353809671|gb|EHD89931.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA13494]
gi|353815689|gb|EHD95904.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA14798]
gi|353819452|gb|EHD99650.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA16121]
gi|353823893|gb|EHE04067.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA16833]
gi|353833661|gb|EHE13769.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA19077]
gi|353845198|gb|EHE25240.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA41688]
gi|353865060|gb|EHE44969.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47976]
gi|353880058|gb|EHE59875.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 5185-06]
gi|353883255|gb|EHE63064.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 3063-00]
gi|353905063|gb|EHE80502.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA13338]
gi|379531359|gb|EHY96593.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA02254]
gi|379538191|gb|EHZ03372.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA13499]
gi|379540011|gb|EHZ05188.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA05245]
gi|379551189|gb|EHZ16284.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA11856]
gi|379564524|gb|EHZ29520.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA17719]
gi|379587460|gb|EHZ52308.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA43264]
gi|379601073|gb|EHZ65850.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47628]
gi|379615796|gb|EHZ80501.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 8190-05]
gi|395873666|gb|EJG84756.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SPAR55]
gi|395896999|gb|EJH07963.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA58581]
Length = 763
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 209/739 (28%), Positives = 335/739 (45%), Gaps = 135/739 (18%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLMK 121
Query: 350 EAVRLLE------NEKILV--VKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
++ L NE+ ++ + D++
Sbjct: 122 RILKQLNLDPKKWNERTILGTISNAKNDLID----------------------------- 152
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
DVA A A+ + +I A Y LR ++D+ DLI +++L
Sbjct: 153 ----------DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRL 197
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGA 520
P+V YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GA
Sbjct: 198 FDQNPDVLTYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGA 257
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
D+ F KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I
Sbjct: 258 DMQNILDFEKDYPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQI 316
Query: 581 IIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKI 638
+ +E + F+ I L + N + A+LYR + + A + I
Sbjct: 317 VYYRADDELDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNI 371
Query: 639 PFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VID 692
P+ + G FY +K +R IIA L D+ + R+ E KR ++
Sbjct: 372 PYTMVGGTKFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGLGTVE 423
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV 752
I + ++ S + A+ +I + I G +S +L E + L SI+ +
Sbjct: 424 KIRDFANLQNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITEL 478
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
+ SV LE+ VD +LN L S + + ++ +FLS +
Sbjct: 479 VESV---------LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTT 521
Query: 813 NVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKA 872
+V +++ G ++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+
Sbjct: 522 DVTEEETG-LDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGM 577
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL------ 926
E PL E +EEERRL YV +TRA K ILY + +AN +LL
Sbjct: 578 EENVFPLSR-----ATEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNY 628
Query: 927 -QPSRFLKEIPHHLREVQA 944
+P+RF+ EI L E Q
Sbjct: 629 NRPTRFINEISSDLLEYQG 647
>gi|415711695|ref|ZP_11464349.1| UvrD/REP helicase [Gardnerella vaginalis 55152]
gi|388057811|gb|EIK80624.1| UvrD/REP helicase [Gardnerella vaginalis 55152]
Length = 942
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 211/747 (28%), Positives = 341/747 (45%), Gaps = 115/747 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ LN QQ +A + LLI AG GSGK PS ILA+TFT
Sbjct: 83 LEGLNPQQYKAVQYE-GPALLIGAGAGSGKTRVLTRRIAWILANRKAWPSQILAITFTNK 141
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EMR+R+ +++G A + +STFHS +++ R+H + + S F IY R
Sbjct: 142 AAAEMRERLANLIGN-NANSMWVSTFHSACVKILRAHGDSIGLKSGFSIYDSSDCERL-- 198
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
V+++E+E + +K+ + +L + + S F N + + + K C + +
Sbjct: 199 --VKIIESELNIDIKKFTPKLLLS-------KISDFKNNLVTW--QENLKNCAPDY--KL 245
Query: 410 GMDVAKASGKTPAEFRKIG--DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
G V+ AS F G D + AA+ Y L NA+D+ DLI +V+LL P+
Sbjct: 246 GASVSGAS-----SFNAAGNADALYAAVYAEYQNRLNVSNAVDFDDLIMLTVRLLRQNPQ 300
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS--------------------------H 501
V Y+ ++ I+VDE+QDT+ QY L++ LA
Sbjct: 301 VSAYYRRKFRYILVDEYQDTNHAQYVLIRELAGVDDAGVDDYSADLPDSSVSPDSTQLPQ 360
Query: 502 NRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHN 561
+ IT+VGD DQSI++F GADI F +DF N I L +NYRST+ I++AA+++I +N
Sbjct: 361 SSITVVGDSDQSIYAFRGADIRNIQDFEQDFPNATTIMLEQNYRSTQTILDAANAVISNN 420
Query: 562 VKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILE-HASNGPASICSYGSIAILY 620
R + K + T GS II N + +++ +I +G +Y IAI+Y
Sbjct: 421 ANR-KPKKLWTSLGKGSPIIGYVADNAQGEASWVAQEIARLRGEDG----INYSDIAIMY 475
Query: 621 RRQVSGKVFQTAFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAF 679
R + + A + +P+ + G FY ++ V+ +A L++ DD RR+
Sbjct: 476 RANSQSRSLEDALIKSGLPYQLVGGTKFYERREVKDALAYLQSIANPDDDVNMRRILN-- 533
Query: 680 LLLEKEEKKRVIDHIDKISTIRKCSFISA--ACDIFGAKISGTFKRSQLTQGRKVLLTLE 737
+ ++ R I + SF S D +I + + + + L+T
Sbjct: 534 -VPKRGLGARAESQITSYAKENSISFWSTLNQIDKIAEQIGISSRTFNALKSFRDLMT-S 591
Query: 738 MISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADV 797
+I + + S V+ +V N Q LL+ L E D + + V
Sbjct: 592 LIDFMEANDSKPSKVVENVLN---QSGLLQD-----------LRESKDPQDEFR-----V 632
Query: 798 TDFLSTKFTAAKEEGNV-DQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTI 856
+ + AA+ E N D + G + D ++ Q D VTL T+
Sbjct: 633 DNLSQLQSVAAEYEQNTPDANVAGFLETTALVAD------SDQLPDQGEDT-GKVTLMTL 685
Query: 857 HQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILY 916
H +KGLE+ +VF+ + P + N+K + EERRL YV +TRA+K L++ +
Sbjct: 686 HTAKGLEYPVVFLTGMEQGTFPHSRCVD---NQK--ELCEERRLAYVGITRAKKILYVTW 740
Query: 917 VMMDANW----QLLQPSRFLKEIPHHL 939
+ W +++Q S+FL EIP L
Sbjct: 741 AAERSQWGKSAEMIQ-SQFLDEIPADL 766
>gi|423098467|ref|ZP_17086236.1| ATP-dependent DNA helicase PcrA [Listeria innocua ATCC 33091]
gi|370795133|gb|EHN62863.1| ATP-dependent DNA helicase PcrA [Listeria innocua ATCC 33091]
Length = 733
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 219/733 (29%), Positives = 346/733 (47%), Gaps = 117/733 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q A PLLI+AG GSGK G++P NILA+TFT
Sbjct: 9 VDGLNPEQ-RKAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTNK 67
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ RIG+++G A+ + ISTFHS +++ R +++ F I G + ++I
Sbjct: 68 AAREMKSRIGNLMG-GEAESIWISTFHSMCVRILRRDIDRIGYERNFTIL-DGSDQLSVI 125
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ IL K + G + S+S+ K N+
Sbjct: 126 KG--------ILKEKNVDPKKFEPRG---------------ILASISNAK----NELITA 158
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ +ASG D++ + E Y L+ ALD+ DLI +++L P+V
Sbjct: 159 SEYIKEASG--------FYDKMVGEVYEKYEKKLKKNQALDFDDLIMVTIQLFERVPDVL 210
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ ++ I VDE+QDT+ QY L+++LAS + +VGD DQSI+ + GADIS SF
Sbjct: 211 EYYQRKFQYIHVDEYQDTNHAQYLLVKLLASRFKNLCVVGDSDQSIYGWRGADISNIMSF 270
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + K I L NYRST+ I+EAA+ +I++N R + KN+ T N+ G KI + E
Sbjct: 271 EKDYPSAKTILLEENYRSTKRILEAANRVIENNGNR-KPKNLWTSNAEGKKIFYHKALTE 329
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ A+++ KI E +N + + AILYR +V + F + + + + G F
Sbjct: 330 KEEAAYVVMKIQEEVNNSSRPLSDF---AILYRTNAQSRVMEEYFMKSNMAYTMVGGTKF 386
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y +K ++ I+A LR DD R+ KR + T+ K + ++
Sbjct: 387 YDRKEIKDILAYLRLISNNEDDISLTRIINV--------PKRGVGP----GTLEKLNNVA 434
Query: 708 AACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLE 767
AA D+ ++ + + ++ K+ L LVR + + SV +V + +LE
Sbjct: 435 AAYDLSLFEVLNRIELAGISA--KISKDLVAFHDLVRGFTQMQDFL-SVTELVEE--ILE 489
Query: 768 Q---RAVVDFDGGKLLNEDNDLRSV-LQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
+ RA+ L NE R++ Q L ++ +FLS KE + DK
Sbjct: 490 KTGYRAM-------LKNE----RTIEAQTRLENIDEFLSVTQNFEKE----NDDK----- 529
Query: 824 VLKAFI-DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
L AF+ D + + + +VTL T+H +KGLE+ +VF+ E P
Sbjct: 530 TLLAFLTDLALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFP---- 585
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQPSRFLKEI 935
+ + +EEERRL YV +TRA ++LF+ LY +N Q SRF+ EI
Sbjct: 586 -HSRAIYEEEEMEEERRLAYVGITRAEEELFLTSAYSRMLYGRPSSN----QESRFIGEI 640
Query: 936 PHHLREVQAEQSV 948
P L E+ E +
Sbjct: 641 PRDLLELGNENKL 653
>gi|313200859|ref|YP_004039517.1| uvrd/rep helicase [Methylovorus sp. MP688]
gi|312440175|gb|ADQ84281.1| UvrD/REP helicase [Methylovorus sp. MP688]
Length = 665
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 194/718 (27%), Positives = 327/718 (45%), Gaps = 115/718 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN Q EA + PLL++AG GSGK G P I A+TFT
Sbjct: 2 LSKLNSPQREA-VKYLDGPLLVLAGAGSGKTRVITQKIAYLIEQCGYQPREIAAITFTNK 60
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G ++ +AK LTI+TFHS LQ+ R A L +F I
Sbjct: 61 AAREMQERVGHLLEGKSAKGLTIATFHSLGLQMLRQEAALLGYKPQFSILDSS------- 113
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++ KIL D+L T + L S Q ++++
Sbjct: 114 ------DSYKILA------DVLAT-------------TDKQLLRRTQS----QISQWKNA 144
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
++ +A + E A + + Y L++ A+D+ DLI V+L E
Sbjct: 145 FINPDQAKAQADEEL----THAAAKVYQLYQQTLKAYQAVDFDDLIKLPVELFEQHREAL 200
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSF 528
+++Q K +++DE+QDT+A QY L+++L R T VGDDDQ+I+ + GAD+
Sbjct: 201 EKWQRKLKYLLIDEYQDTNACQYKLVKLLTGVEGRFTAVGDDDQAIYGWRGADVENLRQL 260
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
+DF K I+L +NYRST I+ AA+ +I +N K K + ++ G I + +E
Sbjct: 261 TEDFSRLKVIKLEQNYRSTVRILRAANQVIANNPKLFD-KKLWSELGTGDLIQVSAARDE 319
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAF 647
D + ++ K++ H Y AILYR ++F+ R K+P+ + G +F
Sbjct: 320 DHEAESVVMKLMAHKFEHRTQFSDY---AILYRGNHQARIFEQQLRNHKVPYTVSGGQSF 376
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID-HIDKISTIRKCSFI 706
+ K ++ ++A LR + DD P AF+ KK + + ++++ + +
Sbjct: 377 FDKAEIKDLVAYLR-LIANEDDDP------AFIRAATTPKKGIGNTTLERLGEYARDHHL 429
Query: 707 SAACDIFGAKISGTFKRSQLTQGRKVLLT----LEMISKLVRREPSISAVITSVANMVPQ 762
S +F A G F+R + + LLT + + + R+P+ ++ + N +
Sbjct: 430 S----LFAAAFEGDFQRELGARQLEDLLTFCQYINRVQERATRDPA-GEMLNDMLNAIQY 484
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
+ L +D + ++ ++VL D T +L+ K GN D+ +
Sbjct: 485 EAFL-------YDSEEPRAAESKWKNVL-----DFTGWLTKK-------GNEDEKNLLEL 525
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ + + + RE + ++V L+T+H +KGLE+ VF+ E +P
Sbjct: 526 TQMISLMSMLEGRE--------NGEPDAVKLSTLHAAKGLEFGHVFLIGCEEGILPHRES 577
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPH 937
+ +EEERRL+YV +TRA+K L I + + +PSRF+ E+PH
Sbjct: 578 ID------TDRIEEERRLMYVGITRAQKSLNISWCRKRKRAGETESCEPSRFIAELPH 629
>gi|254428788|ref|ZP_05042495.1| UvrD/REP helicase domain protein [Alcanivorax sp. DG881]
gi|196194957|gb|EDX89916.1| UvrD/REP helicase domain protein [Alcanivorax sp. DG881]
Length = 757
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 198/737 (26%), Positives = 353/737 (47%), Gaps = 122/737 (16%)
Query: 239 DEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILA 283
D+ + + LN Q +A D LL++AG GSGK SP ILA
Sbjct: 39 DDVTSLIDGLNPAQRDAVAAD-DRHLLVLAGAGSGKTRVLVHRIAWQIATEQASPFGILA 97
Query: 284 MTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQ 343
+TFT AA+EMR RI ++ +A + + TFH + +L R+H ++ F
Sbjct: 98 VTFTNKAAAEMRGRIEQLL-DMSADGMWVGTFHGIAHRLLRAHWQEAGLPQGF------- 149
Query: 344 QRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQY 403
II+A +++I ++KR+S ++ + + +A+ F+
Sbjct: 150 ---QIIDA-----DDQIRLIKRVSKELGLDEQRWPARQATWFI----------------- 184
Query: 404 NKFERDGMDVAKASGKTPAEFRKIGDEIGAAILEN----YNGILRSCNALDYHDLISCSV 459
N + +G+ A +G ++ A ++ Y +D+++++ +
Sbjct: 185 NGQKDEGL---------RARHMDVGGDLFALTMQKIYFAYEDACERGGLVDFNEMLLRVL 235
Query: 460 KLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFN 518
+L + YQ ++ I+VDEFQDT+++QY+ L++LA +N +TIVGDDDQSI+ +
Sbjct: 236 ELFRDNDNLRGHYQRRFRHILVDEFQDTNSIQYAWLRLLADENNAVTIVGDDDQSIYGWR 295
Query: 519 GADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGS 578
GA I F +DF + + IRL +NYRST I++AA+++I +N R K + T+ G
Sbjct: 296 GAKIENIHKFSRDFPDTRTIRLEQNYRSTGTILKAANAVIGNNSDRLG-KELWTEGGDGD 354
Query: 579 KIIIKECHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
I + NE + FI +DK+ + + + +A+LYR +V + AF +
Sbjct: 355 PIRLYSGFNEVDEARFIAGRMDKLFQEGT-------ARREMAVLYRSNAQSRVLEEAFLQ 407
Query: 636 RKIPFNIHGVA-FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
IP+ I+G F+ + ++ +A LR D + RV + + ++ +
Sbjct: 408 AGIPYRIYGGQRFFERVEIKNALAYLRLLSHRHADAAFERVVNT---PTRGIGNKTLETL 464
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKV---LLTLEMISKLVRREPSISA 751
+++ R S AA + G QL R + + L +I++L ++ +S
Sbjct: 465 REVARQRSVSLWEAAQAVVG---------EQLLSARAINALAVFLNLIAQLEQQCEGLSL 515
Query: 752 VITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEE 811
T+ ++++E +++F GK E R L ++ + LS A +E
Sbjct: 516 AETT-------EHVIEASGLLEFH-GKEKGEKGQQR------LENLRELLS----ATREF 557
Query: 812 GNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAK 871
G+ D+D + ++ L AF+D+ + E Q +E++V + T+H +KGLE+ +VF+
Sbjct: 558 GDEDEDSE--LDSLTAFLDHAA---LESGEGQADAHEDAVQMMTLHSAKGLEFPVVFITG 612
Query: 872 ANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQP 928
E P H+ + +E+ + EERRL YV +TRA ++L++ + + N P
Sbjct: 613 MEEGLFP--HKMS---SEEPGRLAEERRLCYVGLTRAMRELYLTHAESRRLYGNENYNPP 667
Query: 929 SRFLKEIPHH-LREVQA 944
SRFL+EIP L E++A
Sbjct: 668 SRFLREIPAETLEEIRA 684
>gi|449145466|ref|ZP_21776272.1| ATP-dependent DNA helicase Rep [Vibrio mimicus CAIM 602]
gi|449079005|gb|EMB49933.1| ATP-dependent DNA helicase Rep [Vibrio mimicus CAIM 602]
Length = 671
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 208/735 (28%), Positives = 358/735 (48%), Gaps = 99/735 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKFVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ +GKA ++ L +STFH+ L + R ++L + F ++
Sbjct: 62 EMKERVAQTLGKAESRGLMVSTFHTLGLNIIRREYKQLGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R +L ++S++K N
Sbjct: 110 ---DQDQMALLKELTEKQL--DGDKDLLR--------LLLSTISNWK----NDMLTPQQA 152
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
A A G+ F A E Y ++S NALD+ DLI V LL + EV Q +
Sbjct: 153 KAMAQGEQQQLF--------AHCFELYQKQMQSYNALDFDDLILLPVLLLRSSEEVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L+++L R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F N K I+L +NYRST I+ AA+ LI +N Q K + ++ + G K+ + +NED +
Sbjct: 265 FPNLKLIKLEQNYRSTSRILRAANILIANNPHVYQ-KALFSELAEGEKLKVILANNEDDE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +I+ H + Y AILYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AERVTAEIIAHKF---LNRTEYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ ++E ++ + + +R S +A+
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PKREIGPATLEKLGSYANMRGKSLFAASF 437
Query: 711 DI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQR 769
++ +SG L R L I+ R ++ AV + V ++ + +L E
Sbjct: 438 ELGLEQHLSG----RGLDNLRHFTEWLVAIADNAERGNTVEAVRSLVRDIRYEDWLYETS 493
Query: 770 AVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAF 828
A + + +V+D S + A EG N DQ +K LK
Sbjct: 494 ASP---------------KAAEMRMKNVSDLYS--WIVADLEGDNPDQQEK----TLKEV 532
Query: 829 IDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVN 888
+ ++ R+ R + +D+ ++V L T+H SKGLE+ V++ A E +P H+ +++
Sbjct: 533 VQRLTLRDMME-RGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILP--HQ--TSID 587
Query: 889 EKGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAE 945
E+ +VEEERRL+YV +TRA+++L F++ +L++P SRFL E+P E + +
Sbjct: 588 EE--NVEEERRLMYVGITRAQRELTFMVCKERRQFGELIKPSQSRFLDELPQDDIEWEVK 645
Query: 946 QSVQDQHENIPEGTA 960
+ Q E + +G A
Sbjct: 646 KKPVSQEERMVKGQA 660
>gi|168486496|ref|ZP_02711004.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
CDC1087-00]
gi|418184892|ref|ZP_12821438.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47283]
gi|419510687|ref|ZP_14050329.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae NP141]
gi|421213157|ref|ZP_15670117.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2070108]
gi|421215290|ref|ZP_15672217.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2070109]
gi|183570538|gb|EDT91066.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
CDC1087-00]
gi|353851023|gb|EHE31023.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47283]
gi|379632583|gb|EHZ97157.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae NP141]
gi|395580307|gb|EJG40793.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2070108]
gi|395580777|gb|EJG41251.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 2070109]
Length = 763
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 214/731 (29%), Positives = 335/731 (45%), Gaps = 119/731 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ +E
Sbjct: 266 EKDYPKAKVVLLEENYRSTKIILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRADDE 324
Query: 589 DAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
+ F+ I L + N + A+LYR + + A + IP+ + G
Sbjct: 325 LDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGT 379
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTI 700
FY +K +R IIA L D+ + R+ E KR ++ I + +
Sbjct: 380 KFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGLGTVEKIRDFANL 431
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
+ S + A+ +I + I G +S +L E + L SI+ ++ SV
Sbjct: 432 QNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITELVESV---- 482
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
LE+ VD +LN L S + + ++ +FLS + +V +++ G
Sbjct: 483 -----LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTTDVTEEETG 529
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 530 -LDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGMEENVFPLS 585
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLK 933
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 586 R-----ATEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFIN 636
Query: 934 EIPHHLREVQA 944
EI L E Q
Sbjct: 637 EISSDLLEYQG 647
>gi|148285059|ref|YP_001249149.1| DNA helicase II, CAI27690 [Orientia tsutsugamushi str. Boryong]
gi|146740498|emb|CAM81056.1| DNA helicase II, CAI27690 [Orientia tsutsugamushi str. Boryong]
Length = 716
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 203/723 (28%), Positives = 324/723 (44%), Gaps = 125/723 (17%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTF 286
S+YL LN +Q EA + PLL++AG G+GK SP ILA+TF
Sbjct: 2 SQYLLDLNPEQREAVI-TTNGPLLVLAGAGTGKTRVITYRIAYIIDQFMASPEEILAVTF 60
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR 346
T AA+EM+ R+ I T + I TFH+ + ++ ++HAE + TS F I +Q
Sbjct: 61 TNKAATEMQSRVAEITNNTTG--IYIGTFHAIATKILKAHAELVGLTSSFSIIDQSEQ-- 116
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
VR+++N I IST + S +C+
Sbjct: 117 -----VRVIKN--ICETHGISTK------------------------NYSPKDICEIISR 145
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
+D + K TP ++ I ++Y L+ N +D+ DL+ ++K+ S +P
Sbjct: 146 WKDLGEQPKIDCHTPIY------QVAQKIYQHYQTELQKSNVVDFGDLLLYNMKIFSEYP 199
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGF 525
+V YQ +K + +DE+QDT+ +QY + L + H + VGDDDQSI+S+ GA+I
Sbjct: 200 DVLNFYQTKFKYVFIDEYQDTNNVQYFWAKALVNLHENLCCVGDDDQSIYSWRGANIENI 259
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
F+ DF N K I+L +NYRST I+ AASS+I +N R K + T+ I I C
Sbjct: 260 LKFKDDFKNAKLIKLEQNYRSTNSILTAASSIICNNKYRHD-KKLWTNKQSDQPIRIVYC 318
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHG 644
+N+ + FI +I + + P SIA+L R V + +F I + I G
Sbjct: 319 YNDREEARFISSEIKKLITKSPNL-----SIAVLVRSSSQAHVLEESFFSNNIKYQVIGG 373
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCS 704
F+ + + +IA LR +++H D ++ R
Sbjct: 374 FRFFDRMEIADMIAYLRV---------------------------LVNHNDNLALTR--- 403
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKY 764
I+ G T K + +E I +P + + S+ N + +
Sbjct: 404 IINVPKRSIGPATLHTIKEYAQQHESSMFTAIEQILSKKLLKPQLELTLQSLINKFKEWH 463
Query: 765 LLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINV 824
L + +++ ED++ LQ L D + D+ + +
Sbjct: 464 SLYKAGYTPAKVTEIICEDSNY---LQMLKDD-------------KSSQSDRRIENIQEM 507
Query: 825 LKAFIDYIS-ERETEH--FRTQRHDNEN-----SVTLTTIHQSKGLEWDIVFVAKANETE 876
++A +DY S E EH +R + N +V+L T+H SKGLE+D+VF+ E
Sbjct: 508 IRAMLDYNSIEEFLEHTSLFLERDNGINAKDNSAVSLMTLHASKGLEFDVVFLPGLEEGV 567
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLK 933
P H+ + E ++EEERR+ YV +TRA++ L+I Y + + LQPSRFL
Sbjct: 568 FP--HQ-KSLIAEDQRALEEERRIAYVGITRAKQSLYISYADQRRIFNEFVKLQPSRFLL 624
Query: 934 EIP 936
+IP
Sbjct: 625 DIP 627
>gi|414157342|ref|ZP_11413642.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. F0442]
gi|410868658|gb|EKS16623.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. F0442]
Length = 761
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 209/731 (28%), Positives = 333/731 (45%), Gaps = 119/731 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R + ++ I+TFHS +++ R A+ + F I G+Q R ++
Sbjct: 64 AAREMKERAYQL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQ-RTLM 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ R+L++ + K +L T +S+ K N +
Sbjct: 121 K--RILKSLNLDPKKWNERTILGT---------------------ISNAK----NDLIDE 153
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
VA+A + +I A E Y LR A+D+ DLI +++L P+V
Sbjct: 154 VAYVAQAG--------DMYTQIVAKCYEAYQKELRQSEAVDFDDLIMLTLRLFDQHPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + K + L NYRST+ I++AA+ +I++N R + KN+ T N +G +I+ ++E
Sbjct: 266 EKDYPDAKVVLLEENYRSTKTILQAANDVIKNNRNR-RPKNLWTQNENGEEIVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+ I E + + A+LYR + + A + IP+ + G F
Sbjct: 325 QDEAVFVAKTIEELSREAG---YKHRDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRK 702
Y +K +R +IA L D+ + R+ E KR +D I + +++
Sbjct: 382 YSRKEIRDVIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVDKIRDFAQMQE 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ +I + I G ++ +L E + L E
Sbjct: 434 SSLLDASANIMLSGIKGKAAQAIWDFANLILDLREKLDHLTITE---------------- 477
Query: 763 KYLLEQRAVVDFDG--GKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
L+E+ V+D G L N+ N L S Q + ++ +FLS E G +D+ G
Sbjct: 478 --LVEE--VLDKTGYMTALTNQGN-LES--QARIENIQEFLSVT-KNFDENGETVEDESG 529
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
+ + D +T+ + + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 530 VETLSRFLNDLALIADTDDGAQETSE----VTLMTLHAAKGLEFPVVFLIGMEENVFPLS 585
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLK 933
E +EEERRL YV +TRA K LF + +AN +LL +P+RF+
Sbjct: 586 R-----AAEDPDELEEERRLAYVGITRAEKVLF----LTNANSRLLFGRTSYNRPTRFIN 636
Query: 934 EIPHHLREVQA 944
EI L Q
Sbjct: 637 EISSDLLTYQG 647
>gi|15640197|ref|NP_229824.1| ATP-dependent DNA helicase Rep [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121587549|ref|ZP_01677315.1| ATP-dependent DNA helicase Rep [Vibrio cholerae 2740-80]
gi|147674491|ref|YP_001218439.1| ATP-dependent DNA helicase Rep [Vibrio cholerae O395]
gi|227080400|ref|YP_002808951.1| ATP-dependent DNA helicase Rep [Vibrio cholerae M66-2]
gi|227116575|ref|YP_002818471.1| ATP-dependent DNA helicase Rep [Vibrio cholerae O395]
gi|229507018|ref|ZP_04396526.1| ATP-dependent DNA helicase Rep [Vibrio cholerae BX 330286]
gi|229509395|ref|ZP_04398878.1| ATP-dependent DNA helicase Rep [Vibrio cholerae B33]
gi|229516342|ref|ZP_04405790.1| ATP-dependent DNA helicase Rep [Vibrio cholerae RC9]
gi|229606533|ref|YP_002877181.1| ATP-dependent DNA helicase Rep [Vibrio cholerae MJ-1236]
gi|254851295|ref|ZP_05240645.1| ATP-dependent DNA helicase Rep [Vibrio cholerae MO10]
gi|255743986|ref|ZP_05417940.1| ATP-dependent DNA helicase Rep [Vibrio cholera CIRS 101]
gi|298501306|ref|ZP_07011102.1| ATP-dependent DNA helicase Rep [Vibrio cholerae MAK 757]
gi|360036804|ref|YP_004938567.1| ATP-dependent DNA helicase Rep [Vibrio cholerae O1 str.
2010EL-1786]
gi|379740058|ref|YP_005332027.1| ATP-dependent DNA helicase Rep [Vibrio cholerae IEC224]
gi|417811244|ref|ZP_12457910.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-49A2]
gi|417814998|ref|ZP_12461639.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HCUF01]
gi|418330873|ref|ZP_12941833.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-06A1]
gi|418335839|ref|ZP_12944742.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-23A1]
gi|418342409|ref|ZP_12949222.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-28A1]
gi|418347584|ref|ZP_12952322.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-43A1]
gi|418353207|ref|ZP_12955934.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-61A1]
gi|419824633|ref|ZP_14348144.1| ATP-dependent DNA helicase Rep [Vibrio cholerae CP1033(6)]
gi|421315464|ref|ZP_15766038.1| ATP-dependent DNA helicase Rep [Vibrio cholerae CP1032(5)]
gi|421318961|ref|ZP_15769523.1| ATP-dependent DNA helicase Rep [Vibrio cholerae CP1038(11)]
gi|421322825|ref|ZP_15773361.1| ATP-dependent DNA helicase Rep [Vibrio cholerae CP1041(14)]
gi|421326466|ref|ZP_15776985.1| ATP-dependent DNA helicase Rep [Vibrio cholerae CP1042(15)]
gi|421330393|ref|ZP_15780879.1| ATP-dependent DNA helicase Rep [Vibrio cholerae CP1046(19)]
gi|421333993|ref|ZP_15784466.1| ATP-dependent DNA helicase Rep [Vibrio cholerae CP1048(21)]
gi|421337899|ref|ZP_15788341.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-20A2]
gi|421345433|ref|ZP_15795821.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-46A1]
gi|422890201|ref|ZP_16932642.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-40A1]
gi|422900995|ref|ZP_16936390.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-48A1]
gi|422905167|ref|ZP_16940037.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-70A1]
gi|422911911|ref|ZP_16946449.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HFU-02]
gi|422924379|ref|ZP_16957436.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-38A1]
gi|423143439|ref|ZP_17131065.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-19A1]
gi|423148420|ref|ZP_17135790.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-21A1]
gi|423152207|ref|ZP_17139429.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-22A1]
gi|423155000|ref|ZP_17142143.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-32A1]
gi|423158865|ref|ZP_17145843.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-33A2]
gi|423163526|ref|ZP_17150334.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-48B2]
gi|423729538|ref|ZP_17702871.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-17A1]
gi|423745559|ref|ZP_17711055.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-50A2]
gi|423890153|ref|ZP_17725089.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-62A1]
gi|423924688|ref|ZP_17729701.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-77A1]
gi|424000711|ref|ZP_17743813.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-17A2]
gi|424004873|ref|ZP_17747870.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-37A1]
gi|424022670|ref|ZP_17762345.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-62B1]
gi|424025689|ref|ZP_17765318.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-69A1]
gi|424585060|ref|ZP_18024667.1| ATP-dependent DNA helicase Rep [Vibrio cholerae CP1030(3)]
gi|424589435|ref|ZP_18028892.1| ATP-dependent DNA helicase Rep [Vibrio cholerae CP1037(10)]
gi|424593686|ref|ZP_18033040.1| ATP-dependent DNA helicase Rep [Vibrio cholerae CP1040(13)]
gi|424597617|ref|ZP_18036829.1| ATP-dependent DNA helicase Rep [Vibrio Cholerae CP1044(17)]
gi|424600391|ref|ZP_18039560.1| ATP-dependent DNA helicase Rep [Vibrio cholerae CP1047(20)]
gi|424605295|ref|ZP_18044272.1| ATP-dependent DNA helicase Rep [Vibrio cholerae CP1050(23)]
gi|424609016|ref|ZP_18047888.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-39A1]
gi|424611929|ref|ZP_18050749.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-41A1]
gi|424615814|ref|ZP_18054519.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-42A1]
gi|424620568|ref|ZP_18059106.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-47A1]
gi|424643385|ref|ZP_18081153.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-56A2]
gi|424651315|ref|ZP_18088850.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-57A2]
gi|424655268|ref|ZP_18092579.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-81A2]
gi|440712103|ref|ZP_20892728.1| ATP-dependent DNA helicase Rep [Vibrio cholerae 4260B]
gi|443502220|ref|ZP_21069222.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-64A1]
gi|443506119|ref|ZP_21072928.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-65A1]
gi|443509954|ref|ZP_21076638.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-67A1]
gi|443513799|ref|ZP_21080354.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-68A1]
gi|443517604|ref|ZP_21084039.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-71A1]
gi|443522191|ref|ZP_21088451.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-72A2]
gi|443529125|ref|ZP_21095146.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-7A1]
gi|443533862|ref|ZP_21099795.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-80A1]
gi|443540136|ref|ZP_21105987.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-81A1]
gi|449054632|ref|ZP_21733300.1| ATP-dependent DNA helicase Rep [Vibrio cholerae O1 str. Inaba
G4222]
gi|9654570|gb|AAF93343.1| ATP-dependent DNA helicase Rep [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121548187|gb|EAX58257.1| ATP-dependent DNA helicase Rep [Vibrio cholerae 2740-80]
gi|146316374|gb|ABQ20913.1| ATP-dependent DNA helicase Rep [Vibrio cholerae O395]
gi|227008288|gb|ACP04500.1| ATP-dependent DNA helicase Rep [Vibrio cholerae M66-2]
gi|227012025|gb|ACP08235.1| ATP-dependent DNA helicase Rep [Vibrio cholerae O395]
gi|229346768|gb|EEO11738.1| ATP-dependent DNA helicase Rep [Vibrio cholerae RC9]
gi|229353710|gb|EEO18647.1| ATP-dependent DNA helicase Rep [Vibrio cholerae B33]
gi|229356123|gb|EEO21042.1| ATP-dependent DNA helicase Rep [Vibrio cholerae BX 330286]
gi|229369188|gb|ACQ59611.1| ATP-dependent DNA helicase Rep [Vibrio cholerae MJ-1236]
gi|254847000|gb|EET25414.1| ATP-dependent DNA helicase Rep [Vibrio cholerae MO10]
gi|255738251|gb|EET93642.1| ATP-dependent DNA helicase Rep [Vibrio cholera CIRS 101]
gi|297539966|gb|EFH76031.1| ATP-dependent DNA helicase Rep [Vibrio cholerae MAK 757]
gi|340045387|gb|EGR06330.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HCUF01]
gi|340045944|gb|EGR06880.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-49A2]
gi|341626564|gb|EGS51936.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-70A1]
gi|341628202|gb|EGS53473.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-48A1]
gi|341628508|gb|EGS53751.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-40A1]
gi|341641779|gb|EGS66298.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HFU-02]
gi|341649063|gb|EGS73064.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-38A1]
gi|356422688|gb|EHH76159.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-06A1]
gi|356423518|gb|EHH76966.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-21A1]
gi|356427516|gb|EHH80764.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-19A1]
gi|356434221|gb|EHH87402.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-23A1]
gi|356435832|gb|EHH88979.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-22A1]
gi|356438583|gb|EHH91595.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-28A1]
gi|356445287|gb|EHH98095.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-32A1]
gi|356448305|gb|EHI01077.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-43A1]
gi|356451115|gb|EHI03817.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-33A2]
gi|356455400|gb|EHI08043.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-61A1]
gi|356456774|gb|EHI09358.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-48B2]
gi|356647958|gb|AET28013.1| ATP-dependent DNA helicase Rep [Vibrio cholerae O1 str.
2010EL-1786]
gi|378793568|gb|AFC57039.1| ATP-dependent DNA helicase Rep [Vibrio cholerae IEC224]
gi|395922953|gb|EJH33766.1| ATP-dependent DNA helicase Rep [Vibrio cholerae CP1032(5)]
gi|395925910|gb|EJH36705.1| ATP-dependent DNA helicase Rep [Vibrio cholerae CP1041(14)]
gi|395926237|gb|EJH37025.1| ATP-dependent DNA helicase Rep [Vibrio cholerae CP1038(11)]
gi|395934797|gb|EJH45534.1| ATP-dependent DNA helicase Rep [Vibrio cholerae CP1042(15)]
gi|395936279|gb|EJH47005.1| ATP-dependent DNA helicase Rep [Vibrio cholerae CP1046(19)]
gi|395938056|gb|EJH48754.1| ATP-dependent DNA helicase Rep [Vibrio cholerae CP1048(21)]
gi|395947073|gb|EJH57730.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-20A2]
gi|395948803|gb|EJH59441.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-46A1]
gi|395964802|gb|EJH74996.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-56A2]
gi|395965046|gb|EJH75232.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-57A2]
gi|395967748|gb|EJH77795.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-42A1]
gi|395976916|gb|EJH86354.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-47A1]
gi|395979598|gb|EJH88942.1| ATP-dependent DNA helicase Rep [Vibrio cholerae CP1030(3)]
gi|395980023|gb|EJH89329.1| ATP-dependent DNA helicase Rep [Vibrio cholerae CP1047(20)]
gi|408011216|gb|EKG49043.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-39A1]
gi|408018156|gb|EKG55616.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-41A1]
gi|408037539|gb|EKG73929.1| ATP-dependent DNA helicase Rep [Vibrio cholerae CP1037(10)]
gi|408038573|gb|EKG74909.1| ATP-dependent DNA helicase Rep [Vibrio cholerae CP1040(13)]
gi|408045763|gb|EKG81560.1| ATP-dependent DNA helicase Rep [Vibrio Cholerae CP1044(17)]
gi|408047648|gb|EKG83222.1| ATP-dependent DNA helicase Rep [Vibrio cholerae CP1050(23)]
gi|408058149|gb|EKG92967.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-81A2]
gi|408612462|gb|EKK85801.1| ATP-dependent DNA helicase Rep [Vibrio cholerae CP1033(6)]
gi|408628362|gb|EKL01115.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-17A1]
gi|408644663|gb|EKL16338.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-50A2]
gi|408659829|gb|EKL30862.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-77A1]
gi|408661001|gb|EKL31999.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-62A1]
gi|408850106|gb|EKL90089.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-37A1]
gi|408850431|gb|EKL90392.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-17A2]
gi|408876099|gb|EKM15233.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-62B1]
gi|408882256|gb|EKM21096.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-69A1]
gi|439972113|gb|ELP48410.1| ATP-dependent DNA helicase Rep [Vibrio cholerae 4260B]
gi|443433380|gb|ELS75888.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-64A1]
gi|443437259|gb|ELS83357.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-65A1]
gi|443441092|gb|ELS90761.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-67A1]
gi|443444904|gb|ELS98162.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-68A1]
gi|443448709|gb|ELT05326.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-71A1]
gi|443451803|gb|ELT12047.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-72A2]
gi|443459968|gb|ELT27358.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-7A1]
gi|443462961|gb|ELT33979.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-80A1]
gi|443464423|gb|ELT39086.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-81A1]
gi|448265778|gb|EMB03011.1| ATP-dependent DNA helicase Rep [Vibrio cholerae O1 str. Inaba
G4222]
Length = 671
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 208/738 (28%), Positives = 357/738 (48%), Gaps = 99/738 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ +GK ++ L +STFH+ L + R + L + F ++
Sbjct: 62 EMKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R +L ++S++K N
Sbjct: 110 ---DQDQLALLKELTEKQL--DGDKDLLR--------LLLSTISNWK----NDMLTPPQA 152
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
A A G+ F A E Y ++S NALD+ DLI V LL + EV Q +
Sbjct: 153 KAMAKGEQQLLF--------AHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEEVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L+++L R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F + K I+L +NYRST I+ AA+ LI +N Q K + ++ + G K+ + +NED +
Sbjct: 265 FPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQ-KALFSELAEGEKLKVILANNEDHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+I +I+ H + Y AILYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AERVIAEIIAHKF---LNRTEYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ ++E ++ + + +R S +A+
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PKREIGPATLEKLGSYANMRGKSLFTASF 437
Query: 711 DI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQR 769
++ +SG L R+ L I+ R ++ AV V ++ + +L E
Sbjct: 438 ELGLEQHLSG----RGLENLRRFTEWLVAIADNAERGNTVEAVRALVRDIRYEDWLYETS 493
Query: 770 AVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAF 828
A + + +V+D S + A EG N DQ +K LK
Sbjct: 494 ASP---------------KAAEMRMKNVSDLYS--WIVADLEGDNPDQQEK----TLKEV 532
Query: 829 IDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVN 888
+ ++ R+ R + +D+ ++V L T+H SKGLE+ V++ A E +P H+ +++
Sbjct: 533 VQRLTLRDMME-RGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILP--HQ--TSID 587
Query: 889 EKGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAE 945
E+ +VEEERRL+YV +TRA+++L FI+ +L++P SRFL E+P E + +
Sbjct: 588 EE--NVEEERRLMYVGITRAQRELTFIVCKERRQFGELIKPSQSRFLDELPQDDIEWEVK 645
Query: 946 QSVQDQHENIPEGTAQFT 963
+ Q E + +G A
Sbjct: 646 KKPVTQEERMAKGQAHIA 663
>gi|440228913|ref|YP_007342706.1| ATP-dependent DNA helicase Rep [Serratia marcescens FGI94]
gi|440050618|gb|AGB80521.1| ATP-dependent DNA helicase Rep [Serratia marcescens FGI94]
Length = 674
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 196/724 (27%), Positives = 342/724 (47%), Gaps = 102/724 (14%)
Query: 260 MSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAASEMRDRIGSIVGK 304
++ P L++AG GSGK G +I A+TFT AA EM++R+ +G+
Sbjct: 14 VTGPCLVLAGAGSGKTRVITNKIAHLIHHCGYQARHIAAVTFTNKAAREMKERVSQTLGR 73
Query: 305 ATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV-RLLENEKILVV 363
A+ L ISTFH+ L++ + + LE S F ++ Q + E + LEN+K LV
Sbjct: 74 KEARGLMISTFHTLGLEIIKREYKALEMKSNFSLFDDQDQLALLKELTEKWLENDKTLVA 133
Query: 364 KRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDVAKASGKTPAE 423
+ IST +S++K D +D +A+ +E
Sbjct: 134 QLIST--------------------------ISNWK--------NDLVDPQRAAELARSE 159
Query: 424 FRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDE 483
D++ A Y+ +R+CN LD+ DLI LL EV + +Q+ + ++VDE
Sbjct: 160 ----RDKLFAHCYGLYHAHMRACNVLDFDDLILLPTLLLQRNEEVRERWQNRLRYLLVDE 215
Query: 484 FQDTSAMQYSLLQILASHN-RITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTR 542
+QDT+ QY L+++L + R T+VGDDDQSI+S+ GA ++DF + I+L +
Sbjct: 216 YQDTNTSQYELVKLLVGNRARFTVVGDDDQSIYSWRGARPQNLVLLKEDFPALQVIKLEQ 275
Query: 543 NYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEH 602
NYRS+ I++AA+ LI +N + K + ++ +G ++ + +NED + ++ +++ H
Sbjct: 276 NYRSSERILKAANILIANNPHVFE-KRLFSELGYGEELKVVTANNEDHEAERVVGELIAH 334
Query: 603 ASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRKKVVRAIIAMLR 661
+YG AILYR +VF+ + +IP+ I G +F+ + ++ ++A LR
Sbjct: 335 HF---VKKTNYGDYAILYRGNHQSRVFEKMLMQNRIPYKISGGTSFFSRPEIKDLLAYLR 391
Query: 662 TTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKISGTF 721
DD + R+ ++E + + + + +R S +A+ D+ +S
Sbjct: 392 VLTNPDDDSAFLRIVNT---PKREIGPATLQKLGEWANLRNKSLFAASFDV---GLSQHL 445
Query: 722 KRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLN 781
L ++ ++ I++ V REP ++AV + + + +L E A ++ N
Sbjct: 446 TGRGLESLQRFTHWMDGIAQQVEREP-VAAVRDLIRGVDYESWLFETSASPKAAEMRMKN 504
Query: 782 EDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFI--DYISERETEH 839
+ L +T+ L EG+ ++ V+ F D + E+E
Sbjct: 505 --------VNTLFGWMTEML---------EGSDLEEPMTLTQVVTRFTLRDMMERGESE- 546
Query: 840 FRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERR 899
+ + V L T+H SKGLE+ VF+ E +P +++E +VEEERR
Sbjct: 547 ------EELDQVQLMTLHASKGLEFPYVFLVGMEEGLLP----HQSSIDED--NVEEERR 594
Query: 900 LLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEIPHHLREVQAEQSVQDQHENIP 956
L YV +TRA+K+L + L +PSRFL E+P + E+ V E +
Sbjct: 595 LAYVGITRAQKELIFTLCRERRQYGELVRPEPSRFLLELPQDDLAWETERKVISPQERMQ 654
Query: 957 EGTA 960
+G +
Sbjct: 655 KGQS 658
>gi|385262526|ref|ZP_10040630.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. SK643]
gi|385190427|gb|EIF37874.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. SK643]
Length = 763
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 207/731 (28%), Positives = 333/731 (45%), Gaps = 119/731 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R + ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYGL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R+ + ++S+ K N D
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERS--------ILGTISNAK----NDLIDD 153
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ A+A + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 154 VVYAAQAG--------DMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ ++E
Sbjct: 266 EKDYPQAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ FI I E N + A+LYR + + A + IP+ + G F
Sbjct: 325 LDEAVFIAKTIDELGRN---QNFLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKF 381
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRK 702
Y +K +R IIA L D+ + R+ E KR ++ I + ++
Sbjct: 382 YSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANMQD 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI--TSVANMV 760
S + A+ +I + I G +S +L E + +L + + AVI T +++
Sbjct: 434 MSMLDASANIMLSGIKGKAAQSIWDFANMILDLREQLDQLNLTD-LVEAVIEKTGYVDIL 492
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
+ LE +A ++ ++ +FLS T ++ Q+ +
Sbjct: 493 KTQATLESKARIE----------------------NIEEFLSV--TKNFDDNPDSQEDET 528
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 529 GLDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGMEENVFPLS 585
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLK 933
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 586 R-----AAEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTSYNRPTRFIN 636
Query: 934 EIPHHLREVQA 944
EI L E Q
Sbjct: 637 EISSDLLEYQG 647
>gi|427426294|ref|ZP_18916355.1| putative ATP-dependent DNA helicase Rep [Acinetobacter baumannii
WC-136]
gi|425696926|gb|EKU66621.1| putative ATP-dependent DNA helicase Rep [Acinetobacter baumannii
WC-136]
Length = 679
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 199/720 (27%), Positives = 334/720 (46%), Gaps = 112/720 (15%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAAS 292
LN++Q E A PLL++AG GSGK I I AMTFT AA
Sbjct: 7 LNNKQ-EEAMKYTQGPLLVLAGAGSGKTSVITRKIAYLVQHCRIPAHRITAMTFTNKAAR 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ ++ + AK L++STFH+F L L R + L + F +I++A
Sbjct: 66 EMKERVTKLLSREEAKGLSVSTFHTFGLNLLRLELKNLPLKANF----------SILDAD 115
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM- 411
KRI D++ D G L A +S +K D +
Sbjct: 116 D---------CKRILMDLMHRDNLSGAESKELI---AKAMKKISDWK--------NDLIL 155
Query: 412 -DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
+ A ++ +TP + + A + + Y LR+ NA+D+ DLI +LL EV
Sbjct: 156 PEQAHSTCETPEDVQ------FAHLYQLYERNLRAYNAVDFDDLIVIPTRLLQENAEVRD 209
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFR 529
++Q+ + ++VDE+QDT+ QY L+++L + T VGDDDQSI+++ GA +
Sbjct: 210 KWQNRVRYLLVDEYQDTNTAQYILVKLLVGVMGQFTAVGDDDQSIYAWRGAKPENMALLK 269
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
+DF N I+L +NYRST I++AA+ +IQ+N K + +D HG I I C N+D
Sbjct: 270 QDFPNLHIIKLEQNYRSTSRILKAANCVIQNNPHIFD-KKLWSDKGHGEVIRIITCRNDD 328
Query: 590 AQCAFIIDKILEHA-SNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAF 647
+ ++ +L H NG ++ A+LYR +V +T R+ +IP+ + G +F
Sbjct: 329 DEAERVVKDLLTHKLMNGK----NWKDYAVLYRGNFQARVLETQLRQMQIPYKLSGGTSF 384
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI-----DHIDKISTIRK 702
+ + ++ +++ LR + DD + R+ KR I + + S
Sbjct: 385 FARAEIKDVMSYLRLIINPEDDSAFLRIINT--------PKRAIGPVTLEKLGLFSQENN 436
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ D + + +QL + + T +L+ + + V +
Sbjct: 437 LSLLGASADQRLSMVLPKKAETQLHEFADFIATF--TRELLEDDEPVPKVRQMMNEAGYM 494
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
Y+ EQ A + KL N +N L + +Q L+ D D+K
Sbjct: 495 DYVREQSATPAQEKSKLDNIEN-LFTSIQNLINRAEDV----------------DEKNIE 537
Query: 823 NVLKAFI--DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
+V++ + D + +++ E ++ + V L T+H +KGLE+ V++ E +P
Sbjct: 538 SVIRKLVLLDLLEQQQEE-------EDTDKVNLLTLHAAKGLEFPYVYIMGLEEELLP-- 588
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDAN---WQLLQPSRFLKEIPH 937
H+ + A ++EEERRL+YV +TRAR+ L + N + + PSRFL E+P
Sbjct: 589 HKNSIA----AETIEEERRLMYVGITRARQGLTLTLAEQRKNGGQMKQMTPSRFLDELPQ 644
>gi|424810016|ref|ZP_18235383.1| ATP-dependent DNA helicase Rep [Vibrio mimicus SX-4]
gi|342322654|gb|EGU18442.1| ATP-dependent DNA helicase Rep [Vibrio mimicus SX-4]
Length = 671
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 206/738 (27%), Positives = 359/738 (48%), Gaps = 99/738 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKFVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ +GKA ++ L +STFH+ L + R ++L + F ++
Sbjct: 62 EMKERVAQTLGKAESRGLMVSTFHTLGLNIIRREYKQLGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R +L ++S++K D +
Sbjct: 110 ---DQDQMALLKELTEKQL--DGDKDLLR--------LLLSTISNWK--------NDMLT 148
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
+A E ++ A E Y ++S NALD+ DLI V LL + EV Q +
Sbjct: 149 PQQAKAMAKGE----QQQLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSSEEVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L+++L R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F N K I+L +NYRST I+ AA+ LI +N Q K + ++ + G K+ + +NED +
Sbjct: 265 FPNLKLIKLEQNYRSTSRILRAANILIANNPHVYQ-KALFSELAEGEKLKVILANNEDHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +I+ H + Y AILYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AERVTAEIIAHKF---LNRTEYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ ++E ++ + + +R S +A+
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PKREIGPATLEKLGSYANMRGKSLFAASF 437
Query: 711 DI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQR 769
++ +SG L R L I+ R ++ AV + V ++ + +L E
Sbjct: 438 ELGLEQHLSG----RGLDNLRHFTEWLVAIADNAERGNTVEAVRSLVRDIRYEDWLYETS 493
Query: 770 AVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAF 828
A + + +V+D S + A EG N DQ +K LK
Sbjct: 494 ASP---------------KAAEMRMKNVSDLYS--WIVADLEGDNPDQQEK----TLKEV 532
Query: 829 IDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVN 888
+ ++ R+ R + +D+ ++V L T+H SKGLE+ V++ A E +P H+ +++
Sbjct: 533 VQRLTLRDMME-RGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILP--HQ--TSID 587
Query: 889 EKGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAE 945
E+ +VEEERRL+YV +TRA+++L F++ +L++P SRFL E+P E + +
Sbjct: 588 EE--NVEEERRLMYVGITRAQRELTFMVCKERRQFGELIKPSQSRFLDELPQDDIEWEVK 645
Query: 946 QSVQDQHENIPEGTAQFT 963
+ Q E + +G A
Sbjct: 646 KKPVSQEERMVKGQAHIA 663
>gi|405761199|ref|YP_006701795.1| ATP-dependent DNA helicase [Streptococcus pneumoniae SPNA45]
gi|404278088|emb|CCM08666.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae
SPNA45]
Length = 763
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 214/731 (29%), Positives = 335/731 (45%), Gaps = 119/731 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ +E
Sbjct: 266 EKDYPKAKIVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRADDE 324
Query: 589 DAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
+ F+ I L + N + A+LYR + + A + IP+ + G
Sbjct: 325 LDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGT 379
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTI 700
FY +K +R IIA L D+ + R+ E KR ++ I + +
Sbjct: 380 KFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGLGTVEKIRDFANL 431
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
+ S + A+ +I + I G +S +L E + L SI+ ++ SV
Sbjct: 432 QNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITELVESV---- 482
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
LE+ VD +LN L S + + ++ +FLS + +V +++ G
Sbjct: 483 -----LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTTDVTEEETG 529
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 530 -LDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGMEENVFPLS 585
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLK 933
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 586 R-----ATEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFIN 636
Query: 934 EIPHHLREVQA 944
EI L E Q
Sbjct: 637 EISSDLLEYQG 647
>gi|333898916|ref|YP_004472789.1| ATP-dependent DNA helicase Rep [Pseudomonas fulva 12-X]
gi|333114181|gb|AEF20695.1| ATP-dependent DNA helicase Rep [Pseudomonas fulva 12-X]
Length = 669
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 184/718 (25%), Positives = 336/718 (46%), Gaps = 109/718 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI +I+AMTFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAHLVQNCGIRAQHIVAMTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ + A+ LT+STFH+ + + R +L F I+ G
Sbjct: 60 AAREMKERVGTLLKGSEARGLTVSTFHNLGMNIIRKEYARLGYKPGFSIFDDGD------ 113
Query: 350 EAVRLLENEKILVVKRISTDMLTTD--GHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
+K + TD++ + G G ++ + ++
Sbjct: 114 -------------IKALLTDIMQKEYAGDDGADEVKNYI-----------------DSWK 143
Query: 408 RDGM--DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
D + D A A + P E + A + +Y L++ NA+D++DLI VKL
Sbjct: 144 NDLILPDEALAKARNPKE------QTAAIVYLHYQRTLKAYNAVDFNDLILLPVKLFQEH 197
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISG 524
++ +++Q+ + ++VDE+QDT++ QY L+++L N+IT+VGDDDQSI+++ GA
Sbjct: 198 QDILEKWQNRIRYLLVDEYQDTNSSQYLLVKLLVGMRNQITVVGDDDQSIYAWRGARPEN 257
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+ ++D+ + K + L +NYRST I++ A+ LI +N + K + ++ G +I +
Sbjct: 258 LNLLKEDYPSLKVVMLEQNYRSTSRILKCANVLIANNPHAFE-KQLWSEMGMGDEIRVIR 316
Query: 585 CHNEDAQCAFIIDKIL-EHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH 643
NEDA+C + +IL EH + Y AILYR K+ + + +IP+ +
Sbjct: 317 TRNEDAECERVALEILTEHLR----TQRPYSDFAILYRGNYQAKLMELKLQHHQIPYRLS 372
Query: 644 -GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRK 702
G +F+ ++ V+ +++ R + DD + RV + +E ++ + ++ RK
Sbjct: 373 GGTSFFARQEVKDLMSYFRLLVNPDDDNAFLRVIN---VPRREIGSATLEKLGNYASERK 429
Query: 703 CSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
S +A+ +I G + + L + VR + ++ I ++ +M
Sbjct: 430 ISMYAASDEIGLGEHLDSRYTER--------LARFKRWMDGVREQCVVNEPIAAIRSM-- 479
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
V+D D L ++ V + + +V F + +D+D+ G
Sbjct: 480 ---------VMDIDYENWLRQNASSDKVAEARMGNVW------FLVDALKNTLDKDEDGD 524
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
+ + A I + R+ + + + + V + T+H SKGLE+ V++ E +P
Sbjct: 525 MTIEDA-IGKLVLRDMLERQQEEEEGADGVQMMTMHASKGLEFPSVYIIGFEEEILPHRS 583
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEIP 936
+ ++EEERRL YV +TRA++ L + + + + PSRFL E+P
Sbjct: 584 SI------EADTIEEERRLAYVGITRAKRNLALTFAAKRKQYGEIVECSPSRFLDELP 635
>gi|307708772|ref|ZP_07645234.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis NCTC 12261]
gi|307615138|gb|EFN94349.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis NCTC 12261]
Length = 763
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 211/731 (28%), Positives = 337/731 (46%), Gaps = 119/731 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R + ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYGL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R+ L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERSILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ +E
Sbjct: 266 EKDYPQAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRADDE 324
Query: 589 DAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
+ F+ I L + N + A+LYR + + A + IP+ + G
Sbjct: 325 LDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGT 379
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTI 700
FY +K +R IIA L D+ + R+ E KR ++ I + +
Sbjct: 380 KFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANM 431
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
+ S + A+ +I + I G +S VL E + +L +I+ ++ +V
Sbjct: 432 QNMSMLDASANIMLSGIKGKAAQSIWDFANMVLDLREQLDQL-----NITELVEAV---- 482
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
LE+ VD +LN L S + + ++ +FLS T ++ + + +++
Sbjct: 483 -----LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSV--TKNFDDTSDEPEEET 528
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 529 GLDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGMEENVFPLS 585
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLK 933
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 586 R-----AAEDQDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFIN 636
Query: 934 EIPHHLREVQA 944
EI L E Q
Sbjct: 637 EISSDLLEYQG 647
>gi|372220929|ref|ZP_09499350.1| UvrD/REP helicase [Mesoflavibacter zeaxanthinifaciens S86]
Length = 774
Score = 221 bits (564), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 152/453 (33%), Positives = 232/453 (51%), Gaps = 61/453 (13%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
Y+ LND Q PL+++AG GSGK G+ NILA+TFT
Sbjct: 3 YIDELNDAQ-RGPVLHKEGPLMVIAGAGSGKTRVLTYRIAHLMEQGVDSFNILALTFTNK 61
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ RI +IVG + AK L + TFHS +L R +KL S F IY +R I
Sbjct: 62 AAREMKHRIAAIVGNSEAKNLWMGTFHSVFAKLLRYDGDKLGFPSNFTIYDTQDSQRLIA 121
Query: 350 EAVRLLENEKIL-----VVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYN 404
++ + +K + V RIS+ + SL + A
Sbjct: 122 SIIKEMGLDKDIYKYKQVQNRISS-----------FKNSLITVKAY-------------- 156
Query: 405 KFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLST 464
F + A A K P ++G+ I +NY A+D+ DL+ + +LL+
Sbjct: 157 -FNNPELIEADAMAKRP----RLGE-----IYKNYVDRCFKAGAMDFDDLLLRTNELLNR 206
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADIS 523
FPEV +YQD +K I+VDE+QDT+ QY +++ LA ++ I +VGDD QSI+SF GA+IS
Sbjct: 207 FPEVLMKYQDRFKYILVDEYQDTNHSQYLIVKALADRYHNICVVGDDAQSIYSFRGANIS 266
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
+F++D+ + K RL +NYRST+ IV AA+S+I+ N + + K V T N G+KII+
Sbjct: 267 NILNFQRDYSDAKVYRLEQNYRSTKNIVNAANSVIEKNKNQLE-KVVWTSNDEGNKIIVH 325
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH 643
+ + ++ I EH G A+LYR + + A R+R IP+ I+
Sbjct: 326 RSPTDAEEGRYVAGSIFEHKMQ---QQLPNGEFAVLYRTNSQSRAIEDALRKRDIPYRIY 382
Query: 644 -GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRV 675
G++FY++K ++ ++A LR + D+ +RV
Sbjct: 383 GGLSFYQRKEIKDVLAYLRLIINPKDEEALKRV 415
>gi|116873192|ref|YP_849973.1| ATP-dependent DNA helicase PcrA [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|116742070|emb|CAK21194.1| ATP-dependent DNA helicase, PcrA family [Listeria welshimeri
serovar 6b str. SLCC5334]
Length = 733
Score = 221 bits (564), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 218/731 (29%), Positives = 343/731 (46%), Gaps = 111/731 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q A PLLI+AG GSGK ++P NILA+TFT
Sbjct: 9 VDGLNPEQ-RRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERSVNPYNILAITFTNK 67
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ RIG+++G A+ + ISTFHS +++ R +++ F I G + ++I
Sbjct: 68 AAREMKSRIGNLMG-GEAESIWISTFHSMCVRILRRDIDRIGYERNFTIL-DGSDQLSVI 125
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ IL K + G + S+S+ K N+
Sbjct: 126 KG--------ILKEKNVDPKKFEPRG---------------ILASISNAK----NELITA 158
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
V +ASG D++ + E Y L+ ALD+ DLI +++L P+V
Sbjct: 159 SEYVKEASG--------FYDKMVGEVYEKYEKKLKKNQALDFDDLIMVTIQLFERVPDVL 210
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ ++ I VDE+QDT+ QY L+++LAS + +VGD DQSI+ + GADIS SF
Sbjct: 211 EYYQRKFQYIHVDEYQDTNHAQYLLVKLLASRFKNLCVVGDSDQSIYGWRGADISNIMSF 270
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K I L NYRST+ I+EAA+ +I++N R + KN+ T N+ G KI + E
Sbjct: 271 EKDYPNAKTILLEENYRSTKRILEAANRVIENNGNR-KPKNLWTSNAEGKKIFYHKALTE 329
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ A+++ KI E +N + + AILYR +V + F + + + + G F
Sbjct: 330 KEEAAYVVMKIQEEVNNSNRPLSDF---AILYRTNAQSRVMEEYFMKSNMAYTMVGGTKF 386
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y +K ++ I+A LR DD R+ KR + T+ K + ++
Sbjct: 387 YDRKEIKDILAYLRLISNNEDDISLTRIINV--------PKRGVGP----GTLEKLNNVA 434
Query: 708 AACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLE 767
AA D+ ++ + + ++ K+ L LVR + + SV +V + +LE
Sbjct: 435 AAYDLSLFEVLNRIELAGISA--KISKDLVAFHDLVRGFTQMQDFL-SVTELVEE--ILE 489
Query: 768 QRAVVDFDGGKLLNEDNDLRSV-LQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLK 826
+ L NE R++ Q L ++ +FLS KE + DK L
Sbjct: 490 KTGY----RAMLKNE----RTIEAQTRLENIDEFLSVTQNFEKE----NDDK-----TLL 532
Query: 827 AFI-DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNG 885
AF+ D + + + +VTL T+H +KGLE+ +VF+ E P +
Sbjct: 533 AFLTDLALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFP-----HS 587
Query: 886 AVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQPSRFLKEIPHH 938
+ +EEERRL YV +TRA ++LF+ LY +N Q SRF+ EIP
Sbjct: 588 RAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRMLYGRPSSN----QESRFIGEIPRD 643
Query: 939 LREVQAEQSVQ 949
L E+ E ++
Sbjct: 644 LLELGNENKLK 654
>gi|290893415|ref|ZP_06556400.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL J2-071]
gi|386008529|ref|YP_005926807.1| ATP-dependent DNA helicase [Listeria monocytogenes L99]
gi|404408200|ref|YP_006690915.1| ATP-dependent DNA helicase [Listeria monocytogenes SLCC2376]
gi|290557066|gb|EFD90595.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL J2-071]
gi|307571339|emb|CAR84518.1| ATP-dependent DNA helicase [Listeria monocytogenes L99]
gi|404242349|emb|CBY63749.1| ATP-dependent DNA helicase [Listeria monocytogenes SLCC2376]
Length = 733
Score = 221 bits (564), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 210/738 (28%), Positives = 331/738 (44%), Gaps = 125/738 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q A PLLI+AG GSGK G++P NILA+TFT
Sbjct: 9 VDGLNPEQ-RRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTNK 67
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ RIG+++G A+ + ISTFHS +++ R +++ F I G + ++I
Sbjct: 68 AAREMKSRIGNLMG-GEAESIWISTFHSMCVRILRRDIDRIGYERNFTIL-DGSDQLSVI 125
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ IL K + G + S+S+ K N+
Sbjct: 126 KG--------ILKEKNVDPKKFEPRG---------------ILASISNAK----NELITA 158
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ +ASG D++ + E Y L+ ALD+ DLI +++L P+V
Sbjct: 159 SEYIKEASG--------FYDKMVGEVYEKYEKKLKKNQALDFDDLIMVTIQLFERVPDVL 210
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ ++ I VDE+QDT+ QY L++ LAS + +VGD DQSI+ + GADIS SF
Sbjct: 211 EYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRFKNLCVVGDSDQSIYGWRGADISNIMSF 270
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K I L NYRST+ I+EAA+ +I++N R + KN+ T N+ G KI + E
Sbjct: 271 EKDYPNAKTILLEENYRSTKRILEAANRVIENNGNR-KPKNLWTSNAEGKKIFYHKALTE 329
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ A+++ KI E +N + + AILYR +V + F + + + + G F
Sbjct: 330 KEEAAYVVMKIQEEVNNSNRPLSDF---AILYRTNAQSRVMEEYFMKSNMAYTMVGGTKF 386
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y +K ++ I+A LR DD R+ + ++ +D ++ ++T S
Sbjct: 387 YDRKEIKDILAYLRLISNNEDDISLTRIIN---VPKRGVGPGTLDKLNNVATTYDLSLFE 443
Query: 708 AACDIFGAKISGTFKRS---------QLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
I A IS + TQ + L E++ +++ + T
Sbjct: 444 VLNRIELAGISPKISKDLVAFHDLIRGFTQMQDFLSVTELVEEILEK--------TGYRA 495
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
M+ + +E Q L ++ +FLS KE D
Sbjct: 496 MLKNERTIEA----------------------QTRLENIDEFLSVTQNFEKE-----NDD 528
Query: 819 KGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
K I L D + + + +VTL T+H +KGLE+ +VF+ E P
Sbjct: 529 KTLIAFL---TDLALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFP 585
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQPSRF 931
+ + +EEERRL YV +TRA ++LF+ LY +N Q SRF
Sbjct: 586 -----HSRAIYEEEEMEEERRLAYVGITRAEEELFLTSAYSRMLYGRPSSN----QESRF 636
Query: 932 LKEIPHHLREVQAEQSVQ 949
+ EIP L E+ E ++
Sbjct: 637 IGEIPRDLLELGNENKLK 654
>gi|258622035|ref|ZP_05717063.1| ATP-dependent DNA helicase Rep [Vibrio mimicus VM573]
gi|258625852|ref|ZP_05720727.1| ATP-dependent DNA helicase Rep [Vibrio mimicus VM603]
gi|258581816|gb|EEW06690.1| ATP-dependent DNA helicase Rep [Vibrio mimicus VM603]
gi|258585688|gb|EEW10409.1| ATP-dependent DNA helicase Rep [Vibrio mimicus VM573]
Length = 678
Score = 221 bits (564), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 206/738 (27%), Positives = 359/738 (48%), Gaps = 99/738 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 10 LNPRQDEA-VKFVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 68
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ +GKA ++ L +STFH+ L + R ++L + F ++
Sbjct: 69 EMKERVAQTLGKAESRGLMVSTFHTLGLNIIRREYKQLGLKAGFSLFD------------ 116
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R +L ++S++K D +
Sbjct: 117 ---DQDQMALLKELTEKQL--DGDKDLLR--------LLLSTISNWK--------NDMLT 155
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
+A E ++ A E Y ++S NALD+ DLI V LL + EV Q +
Sbjct: 156 PQQAKAMAKGE----QQQLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSSEEVRQRW 211
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L+++L R+T+VGDDDQSI+S+ GA +D
Sbjct: 212 QNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 271
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F N K I+L +NYRST I+ AA+ LI +N Q K + ++ + G K+ + +NED +
Sbjct: 272 FPNLKLIKLEQNYRSTSRILRAANILIANNPHVYQ-KALFSELAEGEKLKVILANNEDHE 330
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +I+ H + Y AILYR ++ + + + ++P+ + G +F+ +
Sbjct: 331 AERVTAEIIAHKF---LNRTEYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFAR 387
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ ++E ++ + + +R S +A+
Sbjct: 388 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PKREIGPATLEKLGSYANMRGKSLFAASF 444
Query: 711 DI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQR 769
++ +SG L R L I+ R ++ AV + V ++ + +L E
Sbjct: 445 ELGLEQHLSG----RGLDNLRHFTEWLVAIADNAERGNTVEAVRSLVRDIRYEDWLYETS 500
Query: 770 AVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAF 828
A + + +V+D S + A EG N DQ +K LK
Sbjct: 501 ASP---------------KAAEMRMKNVSDLYS--WIVADLEGDNPDQQEK----TLKEV 539
Query: 829 IDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVN 888
+ ++ R+ R + +D+ ++V L T+H SKGLE+ V++ A E +P H+ +++
Sbjct: 540 VQRLTLRDMME-RGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILP--HQ--TSID 594
Query: 889 EKGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAE 945
E+ +VEEERRL+YV +TRA+++L F++ +L++P SRFL E+P E + +
Sbjct: 595 EE--NVEEERRLMYVGITRAQRELTFMVCKERRQFGELIKPSQSRFLDELPQDDIEWEVK 652
Query: 946 QSVQDQHENIPEGTAQFT 963
+ Q E + +G A
Sbjct: 653 KKPVSQEERMVKGQAHIA 670
>gi|424714636|ref|YP_007015351.1| ATP-dependent DNA helicase pcrA [Listeria monocytogenes serotype 4b
str. LL195]
gi|424013820|emb|CCO64360.1| ATP-dependent DNA helicase pcrA [Listeria monocytogenes serotype 4b
str. LL195]
Length = 745
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 217/730 (29%), Positives = 336/730 (46%), Gaps = 109/730 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q A PLLI+AG GSGK G++P NILA+TFT
Sbjct: 21 VDGLNPEQ-RRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTNK 79
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ RIG+++G A+ + ISTFHS +++ R +++ F I G + ++I
Sbjct: 80 AAREMKSRIGNLMG-GEAESIWISTFHSMCVRILRRDIDRIGYERNFTIL-DGSDQLSVI 137
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ IL K + G + S+S+ K N+
Sbjct: 138 KG--------ILKEKNVDPKKFEPRG---------------ILASISNAK----NELITA 170
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ +ASG D++ + E Y L+ ALD+ DLI +++L P+V
Sbjct: 171 SEYIKEASG--------FYDKMVGEVYEKYEKKLKKNQALDFDDLIMVTIQLFERVPDVL 222
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ ++ I VDE+QDT+ QY L++ LAS + +VGD DQSI+ + GADIS SF
Sbjct: 223 EYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRFKNLCVVGDSDQSIYGWRGADISNIMSF 282
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K I L NYRST+ I+EAA+ +I++N R + KN+ T N+ G KI + E
Sbjct: 283 EKDYPNAKTILLEENYRSTKRILEAANRVIENNGNR-KPKNLWTSNAEGKKIFYHKALTE 341
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ A+++ KI E +N + + AILYR +V + F + + + + G F
Sbjct: 342 KEEAAYVVMKIQEEVNNSNRPLSDF---AILYRTNAQSRVMEEYFMKSNMAYTMVGGTKF 398
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y +K ++ I+A LR DD R+ + ++ +D ++ ++T S
Sbjct: 399 YDRKEIKDILAYLRLISNNEDDISLTRIVN---VPKRGVGPGTLDKLNNVATTYDLSLFE 455
Query: 708 AACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLE 767
I A IS KV L L+R + + SV +V + +LE
Sbjct: 456 VLNRIELAGISP-----------KVSKDLVAFHDLIRGFTQMQDFL-SVTELVEE--ILE 501
Query: 768 QRAVVDFDGGKLLNEDNDLRSV-LQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLK 826
+ L NE R++ Q L ++ +FLS KE D K I L
Sbjct: 502 KTGY----RAMLKNE----RTIEAQTRLENIDEFLSVTQNFEKE-----NDDKTLIAFL- 547
Query: 827 AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGA 886
D + + + +VTL T+H +KGLE+ +VF+ E P +
Sbjct: 548 --TDLALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFP-----HSR 600
Query: 887 VNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQPSRFLKEIPHHL 939
+ +EEERRL YV +TRA ++LF+ LY +N Q SRF+ EIP L
Sbjct: 601 AIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRMLYGRPSSN----QESRFIGEIPRDL 656
Query: 940 REVQAEQSVQ 949
E+ E ++
Sbjct: 657 LELGNENKLK 666
>gi|343501078|ref|ZP_08738961.1| ATP-dependent DNA helicase Rep [Vibrio tubiashii ATCC 19109]
gi|418477816|ref|ZP_13046938.1| ATP-dependent DNA helicase Rep [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342819066|gb|EGU53913.1| ATP-dependent DNA helicase Rep [Vibrio tubiashii ATCC 19109]
gi|384574593|gb|EIF05058.1| ATP-dependent DNA helicase Rep [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 672
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 197/734 (26%), Positives = 351/734 (47%), Gaps = 97/734 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPNQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G +GK +K L +STFH+ L + + + L S F ++
Sbjct: 62 EMKERVGQTLGKNESKGLMVSTFHTLGLNIIKREYKSLGLKSGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R L ++S++K D +
Sbjct: 110 ---DQDQMALLKELTEKQL--DGDKDLLR--------QLLGTISNWK--------NDMLT 148
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
+A + E ++ A E Y +++ NALD+ DLIS V LL T EV Q +
Sbjct: 149 PEQAKAQAKGE----QQQLFAFCFEMYQKQMKAYNALDFDDLISLPVLLLRTNEEVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQ-ILASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L++ I+ R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QNRIRYLLVDEYQDTNTSQYDLVKLIVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
+ N + I+L +NYRST I+ AA+ LI +N + K++ ++ G K+ + NE+ +
Sbjct: 265 YPNLRLIKLEQNYRSTSRILRAANILIANNPHVYE-KSLFSEIPDGEKLKVLLAKNEEHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +++ H + Y A+LYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AERVTGELIAHKF---LNRTEYKDYAVLYRGNHQSRLIEKSLMQNRVPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ +E ++ + + +R S A+
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PRREIGPVTLEKLGSYANMRGKSLFEAS- 436
Query: 711 DIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRA 770
F + + L R+ L I+ R ++ AV + V ++ + +L E +
Sbjct: 437 --FELGLEQSLSGRGLENLRRFTAWLVKIADQAERGDTVEAVRSLVRDINYEDWLYETSS 494
Query: 771 VVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAFI 829
+ + +V+D S + A EG N DQ++K +K +
Sbjct: 495 SP---------------KAAEMRMKNVSDLYS--WIVADLEGDNYDQEEKS----IKEVV 533
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
++ R+ R + ++ ++V L T+H SKGLE+ V++ E +P H+ +++E
Sbjct: 534 QRLTLRDMME-RGEEDEDSDAVQLMTLHASKGLEFPYVYLIGTEEGILP--HQ--TSIDE 588
Query: 890 KGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAEQ 946
+ +VEEERRL+YV +TRA+++L F + +L++P SRFL E+P E + +
Sbjct: 589 E--NVEEERRLMYVGITRAQRELTFTMCKERRQFGELIKPTQSRFLDELPFDDVEWEQVK 646
Query: 947 SVQDQHENIPEGTA 960
Q E + +G A
Sbjct: 647 KPVTQEERMAKGQA 660
>gi|46907989|ref|YP_014378.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes serotype 4b
str. F2365]
gi|405752984|ref|YP_006676449.1| ATP-dependent DNA helicase [Listeria monocytogenes SLCC2378]
gi|46881259|gb|AAT04555.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes serotype 4b
str. F2365]
gi|404222184|emb|CBY73547.1| ATP-dependent DNA helicase [Listeria monocytogenes SLCC2378]
Length = 733
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 219/733 (29%), Positives = 339/733 (46%), Gaps = 115/733 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q A PLLI+AG GSGK G++P NILA+TFT
Sbjct: 9 VDGLNPEQ-RRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTNK 67
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ RIG+++G A+ + ISTFHS +++ R +++ F I G + ++I
Sbjct: 68 AAREMKSRIGNLMG-GEAESIWISTFHSMCVRILRRDIDRIGYERNFTIL-DGSDQLSVI 125
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ IL K + G + S+S+ K N+
Sbjct: 126 KG--------ILKEKNVDPKKFEPRG---------------ILASISNAK----NELITA 158
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ +ASG D++ + E Y L+ ALD+ DLI +++L P+V
Sbjct: 159 SEYIKEASG--------FYDKMVGEVYEKYEKKLKKNQALDFDDLIMVTIQLFERVPDVL 210
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ ++ I VDE+QDT+ QY L++ LAS + +VGD DQSI+ + GADIS SF
Sbjct: 211 EYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRFKNLCVVGDSDQSIYGWRGADISNIMSF 270
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K I L NYRST+ I+EAA+ +I++N R + KN+ T N+ G KI + E
Sbjct: 271 EKDYPNAKTILLEENYRSTKRILEAANRVIENNGNR-KPKNLWTSNAEGKKIFYHKALTE 329
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ A+++ KI E +N + + AILYR +V + F + + + + G F
Sbjct: 330 KEEAAYVVMKIQEEVNNSNRPLSDF---AILYRTNAQSRVMEEYFMKSNMAYTMVGGTKF 386
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y +K ++ I+A LR DD R+ + ++ +D ++ ++T S
Sbjct: 387 YDRKEIKDILAYLRLISNNEDDISLTRIVN---VPKRGVGPGTLDKLNNVATTYDLSLFE 443
Query: 708 AACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLE 767
I A IS KV L L+R + + SV +V + +LE
Sbjct: 444 VLNRIELAGISP-----------KVSKDLVAFHDLIRGFTQMQDFL-SVTELVEE--ILE 489
Query: 768 Q---RAVVDFDGGKLLNEDNDLRSV-LQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
+ RA+ L NE R++ Q L ++ +FLS KE D K I
Sbjct: 490 KTGYRAM-------LKNE----RTIEAQTRLENIDEFLSVTQNFEKE-----NDDKTLIA 533
Query: 824 VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
L D + + + +VTL T+H +KGLE+ +VF+ E P
Sbjct: 534 FL---TDLALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFP----- 585
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQPSRFLKEIP 936
+ + +EEERRL YV +TRA ++LF+ LY +N Q SRF+ EIP
Sbjct: 586 HSRAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRMLYGRPSSN----QESRFIGEIP 641
Query: 937 HHLREVQAEQSVQ 949
L E+ E ++
Sbjct: 642 RDLLELGNENKLK 654
>gi|219848809|ref|YP_002463242.1| UvrD/REP helicase [Chloroflexus aggregans DSM 9485]
gi|219543068|gb|ACL24806.1| UvrD/REP helicase [Chloroflexus aggregans DSM 9485]
Length = 742
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 146/454 (32%), Positives = 226/454 (49%), Gaps = 67/454 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +LN QQ + A ++ P+L++AGPGSGK G+ P ILA+TFT
Sbjct: 7 LANLNPQQ-QRAVTTVTGPVLVLAGPGSGKTRVLTHRIAYLIDEVGVDPLQILAVTFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+ +++G+A A +LT+ TFHS + R L R +F+IY Q R +
Sbjct: 66 AAREMRERLMALLGEAIAHDLTVGTFHSICARWLRRDIVHLGRERDFVIYDTDDQERLLK 125
Query: 350 EAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
+R L NEK + + +L+ H
Sbjct: 126 RVLRELNLNEK----QHLPRAILSAISH-------------------------------- 149
Query: 409 DGMDVAKASGKTPAEF----RKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLST 464
AK P EF R DEI A Y +L NALD+ DL+ +V+L S
Sbjct: 150 -----AKNELVDPEEFARHARTYFDEIVARCYARYQALLYESNALDFDDLLGETVRLFSN 204
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADIS 523
+P V EY ++ ++VDE+QDT+ QY L++ LA +R + +VGD+ QSI+++ GADI
Sbjct: 205 YPAVLAEYHQRYRFLLVDEYQDTNRAQYLLVRALAERDRNLFVVGDEAQSIYAWRGADIR 264
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIK 583
F D+ + I L +NYRST+ I++AA +LI + +R K + T N G ++++
Sbjct: 265 NILQFEHDYPDATVIMLEQNYRSTQAILDAAQALINASPQRKYAKRLWTTNGTGDQVVLY 324
Query: 584 ECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-I 642
E N++ + AF + +I+ + G A G AI+YR ++ + A + +P+ I
Sbjct: 325 EAANDEDEAAFAVSEIMRLIAEGTARP---GDCAIMYRMNAQSRLVEEALIQSHLPYQVI 381
Query: 643 HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVF 676
GV FY +K V+ ++A LR D +RV
Sbjct: 382 GGVRFYERKEVKDVLAYLRLVANPYDSVSLQRVI 415
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 8/93 (8%)
Query: 847 NENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMT 906
N + VT T+HQ+KGLE+ VFV E +P + + N++ +EEERRLLYV MT
Sbjct: 555 NNDVVTCITLHQAKGLEFPYVFVLGVEEGLLP----HSRSTNDRN-QLEEERRLLYVGMT 609
Query: 907 RARKKLFILYVMMDANW---QLLQPSRFLKEIP 936
RA+++L++ Y A + + SRFL +IP
Sbjct: 610 RAQRRLYLSYAAQRAMFGRVTVCSRSRFLADIP 642
>gi|258510684|ref|YP_003184118.1| ATP-dependent DNA helicase PcrA [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257477410|gb|ACV57729.1| ATP-dependent DNA helicase PcrA [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 756
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 199/716 (27%), Positives = 326/716 (45%), Gaps = 96/716 (13%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTF 286
S L+ LN++Q EA P+L++AG GSGK + P ILA+TF
Sbjct: 8 SDILKGLNEKQREAVTA-TDGPVLVIAGAGSGKTSVLTRRIAYLIAERRVPPWAILAITF 66
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR 346
T AA EM +RI +VG A ++ STFH+ ++ R L TS F + Q
Sbjct: 67 TNKAAREMEERIERLVGP-VASDIWTSTFHAMCARILRRDIHHLGYTSAFTVLDAADQ-- 123
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
+ VR L E + V++ RA L ++ +K
Sbjct: 124 --VSLVRRLMQEMNIDVRKFEP------------RAVLHAISQ--------------HKN 155
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
E + A +P + + +GD + Y LR ALD+ DL+ +V+L P
Sbjct: 156 ELRSAEKALDLAGSPYD-KMVGD-----VYLAYERRLRENQALDFDDLLVKTVELFRKVP 209
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGF 525
+V YQ + I VDE+QDT+ QY L+++LA R + +VGD DQSI+ + GADI
Sbjct: 210 DVLAYYQHRFSHIHVDEYQDTNHAQYVLVKLLAERRRNLCVVGDSDQSIYGWRGADIRNI 269
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
F++D+ + + IRL +NYRST I+ A+ +IQHN R + KN+ TD G K +
Sbjct: 270 LEFQRDYPDARVIRLEQNYRSTGRILRIANQVIQHNQMRLE-KNLWTDRGEGEKAKLFVA 328
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-G 644
+E + ++ D+I +NG Y +AILYR +V + AF +R IP+ I+ G
Sbjct: 329 PDERVEADWVADEIARMVANG----REYRDVAILYRTNAQSRVLEEAFLQRGIPYRIYGG 384
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCS 704
+ FY ++ V+ +IA LR DD + RV + ++ ++ + + + R S
Sbjct: 385 LRFYERREVKDVIAYLRLIANPNDDVSFLRVVN---VPKRGIGDTTLEKLAEYARHRGTS 441
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKY 764
AA A IS +K L+ +L++ + +P
Sbjct: 442 LFEAALHALEAGIS-----------KKAASALQSFVELIQ-------TLQLQRAFLPLTD 483
Query: 765 LLEQRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
L ++ ++D G + L + L + + L ++ +FLS T +E V + G +
Sbjct: 484 LTDE--LLDRSGYREALRAERSLEA--ENRLENLDEFLS--LTREFDEDGVPDGEMGALE 537
Query: 824 VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
+ +S+ + R R ++ + V++ T+H +KGLE+ +VF+ E P
Sbjct: 538 QFLTHVALVSDADLPGGRPGRREDLDEVSMMTLHAAKGLEFPVVFLVGLEEGVFPHRRAL 597
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+G + YV +TRA ++L++ M+ + PSRFL E+P
Sbjct: 598 DGGEELEEERRL-----CYVGITRAMERLYLTTCRSRMLFGERRSFTPSRFLSEMP 648
>gi|227509969|ref|ZP_03940018.1| ATP-dependent DNA helicase PcrA [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227190575|gb|EEI70642.1| ATP-dependent DNA helicase PcrA [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 743
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 202/724 (27%), Positives = 334/724 (46%), Gaps = 116/724 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ LN Q +A P+LI+AG GSGK + P NILA+TFT
Sbjct: 7 LKGLNKDQKDAVI-HTEGPVLIMAGAGSGKTRVLTHRIAYIIEHNHVMPWNILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+ ++ + + ++ +STFH+ +++ R + ++L F I +QR
Sbjct: 66 AAREMRERVSKLLDE-SGDDVWVSTFHALCVRILRRNIDQLGFNRAFTIADTSEQR---- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAML-FFSMSSFKLCQYNKFER 408
+VKR+ ++ F + NA + +FK N F
Sbjct: 121 -----------TLVKRVLRELNIDPKKFDPRAVLSSISNAKNDLLTPKAFKAQADNDF-- 167
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D+I A + Y LR +LD+ DLI +++L FP+V
Sbjct: 168 --------------------DQIVADVYARYQAELRQNESLDFDDLIMTTIELFDQFPDV 207
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDS 527
YQD + I VDE+QDT+ QY L+ LA ++ I +VGD DQSI+ + GA++
Sbjct: 208 LSYYQDKFHYIHVDEYQDTNEAQYRLVNTLAKKSKNICVVGDADQSIYGWRGANMQNILD 267
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F++D+ + L +NYRST+ +++AA+++I HN+ R KN+ T+N G KI
Sbjct: 268 FKEDYPDAHVTLLEQNYRSTKTVLDAANAVIAHNLNRAD-KNLWTENEQGEKISYYRGQT 326
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
E+ + +++ KI E P +YGS AILYR +V + + IP+ + G
Sbjct: 327 ENDEARYVVAKIQEEMGK-PKR--NYGSFAILYRTNAQSRVIEETLLKANIPYTMVGGHK 383
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH--IDKISTI---R 701
FY +K +R +A L D + RV E KR I ++K+ T
Sbjct: 384 FYDRKEIRDALAYLTLLGNPRDSMSFERVIN--------EPKRGIGETSLEKLRTFANDH 435
Query: 702 KCSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
S + A+ +I +IS K S + + ++IS + ++ +++ IT + +
Sbjct: 436 GWSLLEASKNIDLANEISSRAKNS-------ISMFEQIISDVAKKLDTMT--ITELTEEI 486
Query: 761 PQK--YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
K YL L L++ Q L ++ +F+S T ++ N DQ
Sbjct: 487 LDKSGYL------------STLKSSKSLQA--QTRLENLEEFISV--TQKYDQDNPDQGG 530
Query: 819 KGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
+ + ++++S+ + + + VTL T+H +KGLE+ +VF+ E P
Sbjct: 531 QDNL------VNFLSDLALVSDQDDLDEKTSEVTLMTMHAAKGLEFPVVFIMGMEEGLFP 584
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
L A +E + ++EERRL YV +TRA++KL++ M+ Q SRF+ EI
Sbjct: 585 LSR---AAQDE--SELQEERRLAYVGITRAKEKLYLTNAYSRMLYGRRQNNPESRFVNEI 639
Query: 936 PHHL 939
L
Sbjct: 640 KPEL 643
>gi|110835551|ref|YP_694410.1| DNA helicase II [Alcanivorax borkumensis SK2]
gi|110648662|emb|CAL18138.1| DNA helicase II [Alcanivorax borkumensis SK2]
Length = 720
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 199/736 (27%), Positives = 348/736 (47%), Gaps = 120/736 (16%)
Query: 239 DEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILA 283
D+ + + LN Q +A D LL++AG GSGK SP ILA
Sbjct: 2 DDVTSLIDGLNPAQRDAVAAD-DQHLLVLAGAGSGKTRVLVHRIAWQIATEQASPFGILA 60
Query: 284 MTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQ 343
+TFT AA+EMR RI ++ +A + + TFH + +L R+H ++ F
Sbjct: 61 VTFTNKAAAEMRGRIEQLL-DMSADGMWVGTFHGIAHRLLRAHWQEAGLPQGF------- 112
Query: 344 QRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQY 403
II+A +++I ++KR+S ++ + + +A+ F+
Sbjct: 113 ---QIIDA-----DDQIRLIKRVSKELGLDEQRWPARQATWFI----------------- 147
Query: 404 NKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSC---NALDYHDLISCSVK 460
+ K G GD + + Y +C +D+++++ ++
Sbjct: 148 --------NSQKDEGLRARHMDTGGDLFALTMQKIYFAYEEACERGGLVDFNEMLLRVLE 199
Query: 461 LLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNG 519
L + YQ ++ I+VDEFQDT+++QY+ L++LA +N +TIVGDDDQSI+ + G
Sbjct: 200 LFRDNDNLRGHYQRRFRHILVDEFQDTNSIQYAWLRLLADENNAVTIVGDDDQSIYGWRG 259
Query: 520 ADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSK 579
A I F +DF + + IRL +NYRST I++AA+++I HN R K + T+ G
Sbjct: 260 AKIENIHKFSRDFPDTRTIRLEQNYRSTGTILKAANAVIGHNSDRLG-KELWTEGGDGDL 318
Query: 580 IIIKECHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRER 636
I + NE + FI +DK+ + + + +A+LYR +V + AF +
Sbjct: 319 IRLYSGFNEVDEARFIAGRMDKLFQEGT-------ARREMAVLYRSNAQSRVLEEAFLQA 371
Query: 637 KIPFNIHGVA-FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHID 695
IP+ I+G F+ + ++ +A LR D + RV + + ++ +
Sbjct: 372 GIPYRIYGGQRFFERVEIKNALAYLRLLSHRHADAAFERVVNT---PTRGIGNKTLETLR 428
Query: 696 KISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKV---LLTLEMISKLVRREPSISAV 752
+++ R S AA + QL R + + L +I++L ++ +S
Sbjct: 429 EVARQRNVSLWDAAQAVVS---------EQLLTARAINALAVFLNLIAQLEQQCDGLSLA 479
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
T+ ++++E +++F GK E R L ++ + LS A +E G
Sbjct: 480 ETT-------EHVIEASGLLEFH-GKEKGEKGQQR------LENLRELLS----ATREFG 521
Query: 813 NVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKA 872
+ D+D + ++ L AF+D+ + E Q +E++V + T+H +KGLE+ +VF+
Sbjct: 522 DEDEDSE--LDSLTAFLDHAA---LESGEGQADAHEDAVQMMTLHSAKGLEFPVVFITGM 576
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPS 929
E P H+ + +E+ + EERRL YV +TRA ++L++ + + N PS
Sbjct: 577 EEGLFP--HKMS---SEEPGRLAEERRLCYVGLTRAMRELYLTHAESRRLYGNENYNPPS 631
Query: 930 RFLKEIPHH-LREVQA 944
RFL+EIP L EV+A
Sbjct: 632 RFLREIPAETLEEVRA 647
>gi|282889815|ref|ZP_06298354.1| hypothetical protein pah_c004o216 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338175902|ref|YP_004652712.1| ATP-dependent DNA helicase pcrA [Parachlamydia acanthamoebae UV-7]
gi|281500389|gb|EFB42669.1| hypothetical protein pah_c004o216 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336480260|emb|CCB86858.1| ATP-dependent DNA helicase pcrA [Parachlamydia acanthamoebae UV-7]
Length = 677
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 204/760 (26%), Positives = 339/760 (44%), Gaps = 152/760 (20%)
Query: 237 MPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNI 281
M +++ + L +LN Q AA +LI+AG GSGK G SP +I
Sbjct: 1 MKNDFKEELDALNPSQ-RAAVTTTDGRVLILAGAGSGKTKVLTVRMAYLMSIKGASPKSI 59
Query: 282 LAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGH 341
L +TFT AA+EMR RIG+ AK++++ TFHSF +Q+ R+ KL T +F +Y
Sbjct: 60 LGLTFTNKAAAEMRHRIGAFAAPHIAKQISLCTFHSFCMQILRAEIHKLGYTPQFSLYDE 119
Query: 342 GQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
+R ++ I+ D+L + + ++ ++N ++S ++C
Sbjct: 120 KDVQR---------------LIGLIARDVLEHEAELPSLASTTAVINQAQNKGLASEEIC 164
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
T +E+ DE I + LR+ NA+D+++L+ +V+L
Sbjct: 165 D-----------------TGSEWH---DEFARTIYQRLQASLRAYNAVDFNNLLGLTVQL 204
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGA 520
FP+V ++YQ+ ++ I++DE+QDT+ +QY L +L+ + + +VGDDDQSI+ + GA
Sbjct: 205 FENFPDVLEKYQERYRYIMIDEYQDTNPVQYKLASLLSRKYQNLCVVGDDDQSIYGWRGA 264
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
++ DF + I+L +NYRST I++AA+ +I HN R Q K + ++ G I
Sbjct: 265 EVKNI----LDFSDATTIKLEQNYRSTNNILKAANGVISHNQTRYQ-KVLWSNRGEGDLI 319
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE----- 635
+ ++ + ++ +I A + IAILYR ++F+ A
Sbjct: 320 EVFHAPSDKEEAEAVVYRI---AHMREKYQLKWRDIAILYRSNALSRLFELALMNYAWKD 376
Query: 636 -----RKIPFNIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR 689
+ IP+ I G FY ++ VR + A LR P L++E R
Sbjct: 377 GDQWIKGIPYEIFGGTEFYERREVRDLFAYLRVIA-----NP----------LDQEALLR 421
Query: 690 VIDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSI 749
+I+ + I + S +A + RS L ++ L REP++
Sbjct: 422 IINQPRR--GIGEASLDAATA----------YNRSH------QLPLWNVLKSLANREPAV 463
Query: 750 SAVITSVANMVPQKYLLEQRAVVDFDG--GKLLNEDNDLRSVLQYLLADVTDFLSTKFTA 807
V + + Q+A+ G G L N Y L ++ + ++ K
Sbjct: 464 QEVSSHWS----------QKALDSLQGFIGILENSKQRFEQDFSYALTELIEAVNYKKAI 513
Query: 808 AKE----------EGNVDQDKKGCINVLKAFI----------DYISERETEHFRTQRHDN 847
E NV + + ++F+ D+I+ + Q N
Sbjct: 514 NDEVKSAQMRDFKWENVQEFVSSLVEFNESFLKEFNKTPTLHDFITSTPLQQDWNQSQKN 573
Query: 848 ---ENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVA 904
++ V L T H SKGLE+ F+ + IP HE ++ E G VEEERRL+YV
Sbjct: 574 TQQKDQVNLMTFHSSKGLEFKACFLVGIEDHIIP--HE--KSLKEVG--VEEERRLMYVG 627
Query: 905 MTRARKKLFILYVMMDANWQL-----LQPSRFLKEIPHHL 939
+TRAR+ F+ M ++ +PSRFL EIP L
Sbjct: 628 ITRARQ--FLTISMARKRKRMGKEYASKPSRFLHEIPKEL 665
>gi|422809841|ref|ZP_16858252.1| ATP-dependent DNA helicase UvrD/PcrA [Listeria monocytogenes FSL
J1-208]
gi|378752160|gb|EHY62746.1| ATP-dependent DNA helicase UvrD/PcrA [Listeria monocytogenes FSL
J1-208]
Length = 731
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 210/738 (28%), Positives = 331/738 (44%), Gaps = 125/738 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q A PLLI+AG GSGK G++P NILA+TFT
Sbjct: 7 VDGLNPEQ-RRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ RIG+++G A+ + ISTFHS +++ R +++ F I G + ++I
Sbjct: 66 AAREMKSRIGNLMG-GEAESIWISTFHSMCVRILRRDIDRIGYERNFTIL-DGSDQLSVI 123
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ IL K + G + S+S+ K N+
Sbjct: 124 KG--------ILKEKNVDPKKFEPRG---------------ILASISNAK----NELITA 156
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ +ASG D++ + E Y L+ ALD+ DLI +++L P+V
Sbjct: 157 SEYIKEASG--------FYDKMVGEVYEKYEKKLKKNQALDFDDLIMVTIQLFERVPDVL 208
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ ++ I VDE+QDT+ QY L++ LAS + +VGD DQSI+ + GADIS SF
Sbjct: 209 EYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRFKNLCVVGDSDQSIYGWRGADISNIMSF 268
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K I L NYRST+ I+EAA+ +I++N R + KN+ T N+ G KI + E
Sbjct: 269 EKDYPNAKTILLEENYRSTKRILEAANRVIENNGNR-KPKNLWTSNAEGKKIFYHKALTE 327
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ A+++ KI E +N + + AILYR +V + F + + + + G F
Sbjct: 328 KEEAAYVVMKIQEEVNNSNRPLSDF---AILYRTNAQSRVMEEYFMKSNMAYTMVGGTKF 384
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y +K ++ I+A LR DD R+ + ++ +D ++ ++T S
Sbjct: 385 YDRKEIKDILAYLRLISNNEDDISLTRIIN---VPKRGVGPGTLDKLNNVATTYDLSLFE 441
Query: 708 AACDIFGAKISGTFKRS---------QLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
I A IS + TQ + L E++ +++ + T
Sbjct: 442 VLNRIELAGISPKISKDLVAFHDLIRGFTQMQDFLSVTELVEEILEK--------TGYRA 493
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
M+ + +E Q L ++ +FLS KE D
Sbjct: 494 MLKNERTIEA----------------------QTRLENIDEFLSVTQNFEKE-----NDD 526
Query: 819 KGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
K I L D + + + +VTL T+H +KGLE+ +VF+ E P
Sbjct: 527 KTLIAFL---TDLALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFP 583
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQPSRF 931
+ + +EEERRL YV +TRA ++LF+ LY +N Q SRF
Sbjct: 584 -----HSRAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRMLYGRPSSN----QESRF 634
Query: 932 LKEIPHHLREVQAEQSVQ 949
+ EIP L E+ E ++
Sbjct: 635 IGEIPRDLLELGNENKLK 652
>gi|217964093|ref|YP_002349771.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes HCC23]
gi|386027134|ref|YP_005947910.1| ATP-dependent DNA helicase [Listeria monocytogenes M7]
gi|217333363|gb|ACK39157.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes HCC23]
gi|336023715|gb|AEH92852.1| ATP-dependent DNA helicase [Listeria monocytogenes M7]
Length = 731
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 210/738 (28%), Positives = 331/738 (44%), Gaps = 125/738 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q A PLLI+AG GSGK G++P NILA+TFT
Sbjct: 7 VDGLNPEQ-RRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ RIG+++G A+ + ISTFHS +++ R +++ F I G + ++I
Sbjct: 66 AAREMKSRIGNLMG-GEAESIWISTFHSMCVRILRRDIDRIGYERNFTIL-DGSDQLSVI 123
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ IL K + G + S+S+ K N+
Sbjct: 124 KG--------ILKEKNVDPKKFEPRG---------------ILASISNAK----NELITA 156
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ +ASG D++ + E Y L+ ALD+ DLI +++L P+V
Sbjct: 157 SEYIKEASG--------FYDKMVGEVYEKYEKKLKKNQALDFDDLIMVTIQLFERVPDVL 208
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ ++ I VDE+QDT+ QY L++ LAS + +VGD DQSI+ + GADIS SF
Sbjct: 209 EYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRFKNLCVVGDSDQSIYGWRGADISNIMSF 268
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K I L NYRST+ I+EAA+ +I++N R + KN+ T N+ G KI + E
Sbjct: 269 EKDYPNAKTILLEENYRSTKRILEAANRVIENNGNR-KPKNLWTSNAEGKKIFYHKALTE 327
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ A+++ KI E +N + + AILYR +V + F + + + + G F
Sbjct: 328 KEEAAYVVMKIQEEVNNSNRPLSDF---AILYRTNAQSRVMEEYFMKSNMAYTMVGGTKF 384
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y +K ++ I+A LR DD R+ + ++ +D ++ ++T S
Sbjct: 385 YDRKEIKDILAYLRLISNNEDDISLTRIIN---VPKRGVGPGTLDKLNNVATTYDLSLFE 441
Query: 708 AACDIFGAKISGTFKRS---------QLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
I A IS + TQ + L E++ +++ + T
Sbjct: 442 VLNRIELAGISPKISKDLVAFHDLIRGFTQMQDFLSVTELVEEILEK--------TGYRA 493
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
M+ + +E Q L ++ +FLS KE D
Sbjct: 494 MLKNERTIEA----------------------QTRLENIDEFLSVTQNFEKE-----NDD 526
Query: 819 KGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
K I L D + + + +VTL T+H +KGLE+ +VF+ E P
Sbjct: 527 KTLIAFL---TDLALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFP 583
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQPSRF 931
+ + +EEERRL YV +TRA ++LF+ LY +N Q SRF
Sbjct: 584 -----HSRAIYEEEEMEEERRLAYVGITRAEEELFLTSAYSRMLYGRPSSN----QESRF 634
Query: 932 LKEIPHHLREVQAEQSVQ 949
+ EIP L E+ E ++
Sbjct: 635 IGEIPRDLLELGNENKLK 652
>gi|194397544|ref|YP_002037718.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae G54]
gi|194357211|gb|ACF55659.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae G54]
Length = 763
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 214/731 (29%), Positives = 334/731 (45%), Gaps = 119/731 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT--- 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R L + S + L
Sbjct: 119 ------------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID------- 152
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
DVA A A+ + +I A Y LR ++D+ DLI +++L P+V
Sbjct: 153 --DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ +E
Sbjct: 266 EKDYPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRADDE 324
Query: 589 DAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGV 645
+ F+ I L + N + A+LYR + + A + IP+ + G
Sbjct: 325 LDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGT 379
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTI 700
FY +K +R IIA L D+ + R+ E KR + I + +
Sbjct: 380 KFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGLGTVXKIRDFANL 431
Query: 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
+ S + A+ +I + I G +S +L E + L SI+ ++ SV
Sbjct: 432 QNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITELVESV---- 482
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
LE+ VD +LN L S + + ++ +FLS + +V +++ G
Sbjct: 483 -----LEKTGYVD-----ILNTQATLESKAR--VENIEEFLSVT-KNFDDTTDVTEEETG 529
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
++ L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 530 -LDKLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGMEENVFPLS 585
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLK 933
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+
Sbjct: 586 R-----ATEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFIN 636
Query: 934 EIPHHLREVQA 944
EI L E Q
Sbjct: 637 EISSDLLEYQG 647
>gi|424658067|ref|ZP_18095335.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HE-16]
gi|408056712|gb|EKG91586.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HE-16]
Length = 671
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 205/735 (27%), Positives = 359/735 (48%), Gaps = 99/735 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ +GK ++ L +STFH+ L + R + L + F ++
Sbjct: 62 EMKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R +L ++S++K D +
Sbjct: 110 ---DQDQLALLKELTEKQL--DGDKDLLR--------LLLSTISNWK--------NDMLT 148
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
+A E ++ A E Y ++S NALD+ DLI V LL + EV Q +
Sbjct: 149 PPQAKTMAKGE----QQQLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEEVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L+++L R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F + K I+L +NYRST I+ AA+ LI +N Q K + ++ + G K+ + +NED +
Sbjct: 265 FPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQ-KALFSELAEGEKLKVILANNEDHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +I+ H + Y AILYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AERVTAEIIAHKF---LNRTEYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ ++E ++ + + +R S +A+
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PKREIGPATLEKLGSYANMRGKSLFTASF 437
Query: 711 DI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQR 769
++ +SG L R+ L I+ R ++ AV + V ++ + +L E
Sbjct: 438 ELGLEQHLSG----RGLDNLRRFTEWLVAIADNAERGNTVEAVRSLVRDIRYEDWLYETS 493
Query: 770 AVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAF 828
A + + +V+D S + A EG N DQ +K LK
Sbjct: 494 ASP---------------KAAEMRMKNVSDLYS--WIVADLEGDNPDQQEK----TLKEV 532
Query: 829 IDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVN 888
+ ++ R+ R + +D+ ++V L T+H SKGLE+ V++ A E +P H+ +++
Sbjct: 533 VQRLTLRDMME-RGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILP--HQ--TSID 587
Query: 889 EKGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAE 945
E+ +VEEERRL+YV +TRA+++L F++ +L++P SRFL E+P E + +
Sbjct: 588 EE--NVEEERRLMYVGITRAQRELTFMVCKERRQFGELIKPTQSRFLDELPQEDIEWEVK 645
Query: 946 QSVQDQHENIPEGTA 960
+ V Q E + +G A
Sbjct: 646 KKVVTQEERMAKGQA 660
>gi|163802159|ref|ZP_02196054.1| ATP-dependent DNA helicase Rep [Vibrio sp. AND4]
gi|159173964|gb|EDP58774.1| ATP-dependent DNA helicase Rep [Vibrio sp. AND4]
Length = 671
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 198/734 (26%), Positives = 350/734 (47%), Gaps = 97/734 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G +GKA +K L +STFH+ L + + + L + F ++
Sbjct: 62 EMKERVGQTLGKAESKGLMVSTFHTLGLSIIKREYKHLGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R L +S++K D +
Sbjct: 110 ---DQDQLALLKELTEKQL--DGDKDLLR--------QLLSCISNWK--------NDMLT 148
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
+A E ++ A E Y +++ NALD+ DLIS V+LL EV Q +
Sbjct: 149 PEQAKALAQGE----QQQLFAFCFEMYQKQMKAYNALDFDDLISLPVQLLRNNQEVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQ-ILASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L++ I+ R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QNRIRYLLVDEYQDTNTSQYDLVKLIVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
+ N + I+L +NYRST I+ AA+ LI +N + K++ ++ G K+ + NE+ +
Sbjct: 265 YPNLRLIKLEQNYRSTSRILRAANILIANNPHVYE-KSLFSEIPDGEKLKVLLAKNEEHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +++ H + +Y AILYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AERVTGELIAHKF---LNRTAYKDYAILYRGNHQSRLIEKSLMQNRVPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ +E ++ + + +R S +
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PRREIGPVTLEKLGSYANMRGKSLFEVS- 436
Query: 711 DIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRA 770
F + L R+ L I+ R ++ AV + V ++ + +L E A
Sbjct: 437 --FEMGLEQFLTGRGLENLRRFTQWLVAIADQAERGDTVEAVRSLVRDIHYEDWLYETSA 494
Query: 771 VVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAFI 829
+ + +V+D S + A EG N DQ++K LK +
Sbjct: 495 SP---------------KAAEMRMKNVSDLYS--WIVADLEGDNYDQEEK----TLKEVV 533
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
++ R+ R + ++ ++V L T+H SKGLE+ V++ + E +P H+ +++E
Sbjct: 534 QRLTLRDMME-RGEEDEDSDAVQLMTLHASKGLEFPFVYLIGSEEGILP--HQ--TSIDE 588
Query: 890 KGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAEQ 946
+VEEERRL+YV +TRA+++L F + +L++P SRFL E+P E +A +
Sbjct: 589 --DNVEEERRLMYVGITRAQRELTFTMCKERRQYGELIKPTQSRFLDELPFDDVEWEANK 646
Query: 947 SVQDQHENIPEGTA 960
E + +G A
Sbjct: 647 KPVSAEERMAKGQA 660
>gi|47092912|ref|ZP_00230694.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 4b
H7858]
gi|254825996|ref|ZP_05230997.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL J1-194]
gi|254932795|ref|ZP_05266154.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes HPB2262]
gi|255521959|ref|ZP_05389196.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL J1-175]
gi|405750109|ref|YP_006673575.1| ATP-dependent DNA helicase [Listeria monocytogenes ATCC 19117]
gi|405755918|ref|YP_006679382.1| ATP-dependent DNA helicase [Listeria monocytogenes SLCC2540]
gi|406704541|ref|YP_006754895.1| ATP-dependent DNA helicase [Listeria monocytogenes L312]
gi|417315407|ref|ZP_12102087.1| ATP-dependent DNA helicase [Listeria monocytogenes J1816]
gi|424823519|ref|ZP_18248532.1| ATP-dependent DNA helicase pcrA [Listeria monocytogenes str. Scott
A]
gi|47018738|gb|EAL09489.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 4b
H7858]
gi|293584348|gb|EFF96380.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes HPB2262]
gi|293595235|gb|EFG02996.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL J1-194]
gi|328466511|gb|EGF37654.1| ATP-dependent DNA helicase [Listeria monocytogenes J1816]
gi|332312199|gb|EGJ25294.1| ATP-dependent DNA helicase pcrA [Listeria monocytogenes str. Scott
A]
gi|404219309|emb|CBY70673.1| ATP-dependent DNA helicase [Listeria monocytogenes ATCC 19117]
gi|404225118|emb|CBY76480.1| ATP-dependent DNA helicase [Listeria monocytogenes SLCC2540]
gi|406361571|emb|CBY67844.1| ATP-dependent DNA helicase [Listeria monocytogenes L312]
Length = 733
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 210/738 (28%), Positives = 331/738 (44%), Gaps = 125/738 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q A PLLI+AG GSGK G++P NILA+TFT
Sbjct: 9 VDGLNPEQ-RRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTNK 67
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ RIG+++G A+ + ISTFHS +++ R +++ F I G + ++I
Sbjct: 68 AAREMKSRIGNLMG-GEAESIWISTFHSMCVRILRRDIDRIGYERNFTIL-DGSDQLSVI 125
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ IL K + G + S+S+ K N+
Sbjct: 126 KG--------ILKEKNVDPKKFEPRG---------------ILASISNAK----NELITA 158
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ +ASG D++ + E Y L+ ALD+ DLI +++L P+V
Sbjct: 159 SEYIKEASG--------FYDKMVGEVYEKYEKKLKKNQALDFDDLIMVTIQLFERVPDVL 210
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ ++ I VDE+QDT+ QY L++ LAS + +VGD DQSI+ + GADIS SF
Sbjct: 211 EYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRFKNLCVVGDSDQSIYGWRGADISNIMSF 270
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K I L NYRST+ I+EAA+ +I++N R + KN+ T N+ G KI + E
Sbjct: 271 EKDYPNAKTILLEENYRSTKRILEAANRVIENNGNR-KPKNLWTSNAEGKKIFYHKALTE 329
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ A+++ KI E +N + + AILYR +V + F + + + + G F
Sbjct: 330 KEEAAYVVMKIQEEVNNSNRPLSDF---AILYRTNAQSRVMEEYFMKSNMAYTMVGGTKF 386
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y +K ++ I+A LR DD R+ + ++ +D ++ ++T S
Sbjct: 387 YDRKEIKDILAYLRLISNNEDDISLTRIVN---VPKRGVGPGTLDKLNNVATTYDLSLFE 443
Query: 708 AACDIFGAKISGTFKRS---------QLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
I A IS + TQ + L E++ +++ + T
Sbjct: 444 VLNRIELAGISPKISKDLVAFHDLIRGFTQMQDFLSVTELVEEILEK--------TGYRA 495
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
M+ + +E Q L ++ +FLS KE D
Sbjct: 496 MLKNERTIEA----------------------QTRLENIDEFLSVTQNFEKE-----NDD 528
Query: 819 KGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
K I L D + + + +VTL T+H +KGLE+ +VF+ E P
Sbjct: 529 KTLIAFL---TDLALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFP 585
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQPSRF 931
+ + +EEERRL YV +TRA ++LF+ LY +N Q SRF
Sbjct: 586 -----HSRAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRMLYGRPSSN----QESRF 636
Query: 932 LKEIPHHLREVQAEQSVQ 949
+ EIP L E+ E ++
Sbjct: 637 IGEIPRDLLELGNENKLK 654
>gi|254556106|ref|YP_003062523.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum JDM1]
gi|254045033|gb|ACT61826.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum JDM1]
Length = 755
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 206/746 (27%), Positives = 338/746 (45%), Gaps = 117/746 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +ND+Q EA D PLLI+AG GSGK G++P N+LA+TFT
Sbjct: 7 LAGMNDKQQEAVL-DTEGPLLIMAGAGSGKTRVLTHRVAYLIEEQGVNPWNVLAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+G ++G+ +A+E+ +STFH+ +++ R E++ F I G +QR
Sbjct: 66 AAREMRERVGKLLGE-SAQEVWVSTFHALCVRILRRDIEQIGYNRAFTIAGTSEQR---- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+VKRI T+ +++ F S K +
Sbjct: 121 -----------TLVKRILTEQ---------------NIDSKKFDPRSILSAISNAKNDLQ 154
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
++ K S +P E + A + Y L + A+D+ DLI +++L PE
Sbjct: 155 TPEMYKESAASPFE------SVVADVYLQYQRELAADQAVDFDDLIMLTIQLFKQNPETL 208
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSF 528
YQ+ + I VDE+QDT+ QY+L+ +LA + + +VGD DQSI+ + GA++ F
Sbjct: 209 AWYQNKFHYIHVDEYQDTNNAQYTLVNLLADKYKNLCVVGDADQSIYGWRGANMENILDF 268
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + L +NYRST+ I+ AA+++I +N R + K + T+N G KI +E
Sbjct: 269 EKDYPQADTVMLEQNYRSTKTILSAANAVINNNSTR-RPKKLWTENEPGDKISYYRGQSE 327
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+I KI E YG AILYR +V + + + IP+ + G F
Sbjct: 328 SDETHFVIAKIQESMQQDK---MDYGDFAILYRTNAQSRVMEESLVKANIPYTMVGGNKF 384
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVF---KAFLLLEKEEKKRVI------DHIDKIS 698
Y +K +R +++ L + D + RV K + EK R+ ++ S
Sbjct: 385 YDRKEIRDVLSYLTLAVNDQDSMNFERVVNEPKRGIGQTSVEKLRLFADEAGYSMLEAAS 444
Query: 699 TIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
+ + ISA AK + T ++L R+ L ++ +++ R + A+ + A
Sbjct: 445 NVDMANGISARAKGALAKFAATM--NELRAMREYLSVTDLTQEILDRTGYMKALKDAKAT 502
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST--KFTAAKEEGNVDQ 816
LE +A ++ ++ +FLS +F + + + D
Sbjct: 503 KS-----LEAQARIE----------------------NIEEFLSVTKQFDDSYQPEDEDS 535
Query: 817 DKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
DK F+D++++ + +VTL T+H +KGLE+ +VF+ E
Sbjct: 536 DK---------FVDFLADLALVSDVDNVEEEPQAVTLMTLHAAKGLEFPVVFLIGMEEGI 586
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLK 933
PL +EEERRL YV +TRA KKL++ M+ Q SRF++
Sbjct: 587 FPLSR-----AMMDEDELEEERRLAYVGITRAEKKLYLTNAYSRMLYGRRQNNPASRFVE 641
Query: 934 EI-PHHLREVQAEQSVQDQHENIPEG 958
EI P L+ + +P G
Sbjct: 642 EIEPELLKNENTLDGASNTGPKVPFG 667
>gi|47095685|ref|ZP_00233292.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 1/2a
F6854]
gi|254913779|ref|ZP_05263791.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes J2818]
gi|254938166|ref|ZP_05269863.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes F6900]
gi|386047411|ref|YP_005965743.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes J0161]
gi|47015970|gb|EAL06896.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 1/2a
F6854]
gi|258610779|gb|EEW23387.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes F6900]
gi|293591795|gb|EFG00130.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes J2818]
gi|345534402|gb|AEO03843.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes J0161]
Length = 733
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 211/739 (28%), Positives = 334/739 (45%), Gaps = 127/739 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q A PLLI+AG GSGK G++P NILA+TFT
Sbjct: 9 VDGLNPEQ-RRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTNK 67
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ RIG+++G A+ + ISTFHS +++ R +++ F I G + ++I
Sbjct: 68 AAREMKSRIGNLMG-GEAESIWISTFHSMCVRILRRDIDRIGYERNFTIL-DGSDQLSVI 125
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ IL K + G + S+S+ K N+
Sbjct: 126 KG--------ILKEKNVDPKKFEPRG---------------ILASISNAK----NELITA 158
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ +ASG D++ + E Y L+ ALD+ DLI +++L P+V
Sbjct: 159 SEYIKEASG--------FYDKMVGEVYEKYEKKLKKNQALDFDDLIMVTIQLFERVPDVL 210
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ ++ I VDE+QDT+ QY L++ LAS + +VGD DQSI+ + GADIS SF
Sbjct: 211 EYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRFKNLCVVGDSDQSIYGWRGADISNIMSF 270
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K I L NYRST+ I+EAA+ +I++N R + KN+ T N+ G KI + E
Sbjct: 271 EKDYPNAKTILLEENYRSTKRILEAANRVIENNGNR-KPKNLWTSNAEGKKIFYHKALTE 329
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ A+++ KI E +N + + AILYR +V + F + + + + G F
Sbjct: 330 KEEAAYVVMKIQEEVNNSNRPLSDF---AILYRTNAQSRVMEEYFMKSNMAYTMVGGTKF 386
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y +K ++ I+A LR DD R+ + ++ +D ++ ++T S
Sbjct: 387 YDRKEIKDILAYLRLISNNEDDISLTRIVN---VPKRGVGPGTLDKLNNVATTYDLSLFE 443
Query: 708 AACDIFGAKISGTFKRS---------QLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
I A IS + TQ + L E++ +++ + T
Sbjct: 444 VLNRIELAGISPKISKDLVAFHDLIRGFTQMQDFLSVTELVEEILEK--------TGYRA 495
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
M+ + +E Q L ++ +FLS KE + DK
Sbjct: 496 MLKNERTIEA----------------------QTRLENIDEFLSVTQNFEKE----NDDK 529
Query: 819 KGCINVLKAFI-DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
L AF+ D + + + +VTL T+H +KGLE+ +VF+ E
Sbjct: 530 -----TLVAFLTDLALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIF 584
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQPSR 930
P + + +EEERRL YV +TRA ++LF+ LY +N Q SR
Sbjct: 585 P-----HSRAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRMLYGRPSSN----QESR 635
Query: 931 FLKEIPHHLREVQAEQSVQ 949
F+ EIP L E+ E ++
Sbjct: 636 FIGEIPRDLLELGNENKLK 654
>gi|424863734|ref|ZP_18287646.1| ATP-dependent helicase PcrA [SAR86 cluster bacterium SAR86A]
gi|400757055|gb|EJP71267.1| ATP-dependent helicase PcrA [SAR86 cluster bacterium SAR86A]
Length = 724
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 198/719 (27%), Positives = 333/719 (46%), Gaps = 101/719 (14%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTF 286
S L +LN++Q +A + LL++AG GSGK G +PS+I+A+TF
Sbjct: 4 SHILDNLNEEQRKAVTSE-KQHLLVLAGAGSGKTRVLVHKIAWEVEALGRNPSSIMAVTF 62
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR 346
T AA+EMR RI S++ +A + + TFH S +L + ++ +S F I Q R
Sbjct: 63 TNKAANEMRSRIESLL-QAPMLDSWVGTFHGLSHKLLKRFYKEAGLSSSFTILDSDDQLR 121
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
++KRIS ++ + + R S + +NA +
Sbjct: 122 ---------------IIKRISKELNLDEAQWP-ARQSQWQINA----------------W 149
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
+ DG+ K I + + + Y + + +D+ +L+ S ++L
Sbjct: 150 KDDGLRQKDVDDKEDFYTETI-----SKVYKEYEETCQRDDLVDFGELLLKSYEVLINSK 204
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-RITIVGDDDQSIFSFNGADISGF 525
V +Q +++I++DEFQDT+ +QY LQ +AS + +T VGDDDQSI+ + GA +
Sbjct: 205 SVKTFFQTRFQSILIDEFQDTNTIQYKWLQEIASRDSNVTAVGDDDQSIYGWRGAKVEHV 264
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
+SF KD+ + IRL +NYRST I+ AA++LI +N R KN+ TD G +I++ +
Sbjct: 265 NSFSKDYKQTEIIRLEQNYRSTNIILNAANALIDNNKDRLG-KNLWTDKVEGEQIVLYQA 323
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-G 644
+NE + F+ D + E + G +Y A+LYR + + A IP+ I+ G
Sbjct: 324 YNEQDEARFVADILKEWMNKG----GTYEEAAVLYRSNAQSRAIEEALLRVSIPYRIYGG 379
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCS 704
+ FY + ++ I+ LR D+ + R + ++ + I + S
Sbjct: 380 LRFYERLEIKNAISYLRIIFNNNDNPSFERSISN---PTRGVGEKTLAKIRNAAKQYNIS 436
Query: 705 FISAACDIFG-AKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
+I A+ + KISG + G K L K E S+S ++ + + +
Sbjct: 437 YIKASAKLIDEGKISG-----RGGSGLKDYLEFIAGCKGFIEENSLSDLMELI---IKET 488
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
L A + GK E+ L TA K +D++ I
Sbjct: 489 GLYAYHAKEAGEKGKTRTEN-----------------LEELITATKNFEQSIKDERTNIE 531
Query: 824 VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
+ ++++D IS + Q +++++ L T+H +KGLE+ +V + E+ P
Sbjct: 532 IAESYLDIISLDSGDR---QASEHDDAAQLMTMHSAKGLEFKLVLLTGLEESLFP----- 583
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHHL 939
+G E + +EEERRL YVA+TRA +KL+I + + PSRFL+EIP L
Sbjct: 584 HGRSMESASQLEEERRLCYVAITRAMEKLYITHAESRRLHGTDTFNPPSRFLREIPKDL 642
>gi|261380715|ref|ZP_05985288.1| ATP-dependent DNA helicase Rep [Neisseria subflava NJ9703]
gi|284796427|gb|EFC51774.1| ATP-dependent DNA helicase Rep [Neisseria subflava NJ9703]
Length = 666
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 190/718 (26%), Positives = 326/718 (45%), Gaps = 119/718 (16%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN QQ +AA + PLL++AG GSGK G P + A+TFT AA+
Sbjct: 3 LNPQQ-QAAVKYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAT 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ ++ K+ + LTI TFHS +++ R A ++ F I
Sbjct: 62 EMQERVSKMLPKSQTRGLTICTFHSLGMKILREEANQIGYKKNFSILD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHF--GYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
STD G G + ++F + + K +
Sbjct: 110 --------------STDSAKIIGELLGGTGKEAIFKAQHQISLWKNDLKTPE-------- 147
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
DV + + + ++ A + +Y L+S A+D+ DLI LL EV
Sbjct: 148 -DVVQTAAN-------VWEQQTARVYASYQETLQSYQAVDFDDLIRLPAVLLQQNSEVRN 199
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFR 529
++Q + ++VDE QDT+ Q++L+++L + T VGDDDQSI+++ GA++ +
Sbjct: 200 KWQRRLRYLLVDECQDTNTCQFTLMKLLTGAEGMFTAVGDDDQSIYAWRGANMENLRKMQ 259
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
+D+ K I+L +NYRST I++ A+ +I++N K K + + G + + C NE
Sbjct: 260 EDYPQMKVIKLEQNYRSTARILKIANKVIENNPKLFT-KKLWSQFGEGEIVKVVACQNEQ 318
Query: 590 AQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFY 648
+ +++ +I++ G Y A+LYR ++F+ A R ++P+ + G +F+
Sbjct: 319 HEADWVVSQIVKQKLVG-GDKTQYADFAVLYRGNHQARIFEEALRSARVPYQLSGGQSFF 377
Query: 649 RKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID-HIDKISTI---RKCS 704
K ++ +++ LR L +D P AFL K+ + D + K++T +CS
Sbjct: 378 DKAEIKDVLSYLR-LLANPNDDP------AFLRAVTTPKRGIGDVTLGKLNTYAHEHECS 430
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKY 764
AA + R L ++MI E + TS A +
Sbjct: 431 LYEAAQTEEALALLNHTNRQHLQA------FMDMI------ESYRAKAETSEAGELIHNL 478
Query: 765 LLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINV 824
L E +D++ L NE+ + + D+T +L K +QD K I +
Sbjct: 479 LRE----IDYENHLLANEEGKAGEIKWRNVTDLTGWLERKG---------EQDGKNIIEL 525
Query: 825 LK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ A + + + E ++V L+T+H SKGLE+ VF+ E +P
Sbjct: 526 AQTIALMTLLEGKSEEEI--------DAVKLSTLHASKGLEYPYVFLVGCEEGILP---- 573
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM---MDANWQLLQPSRFLKEIPH 937
N ++ E +VEEERRL+YV +TRA+++L + + + WQ +PSRF+ E+P
Sbjct: 574 HNDSIEED--NVEEERRLMYVGITRAKRQLTLTHCLKRKKQGTWQFPEPSRFIDEMPQ 629
>gi|386044067|ref|YP_005962872.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes 10403S]
gi|404411060|ref|YP_006696648.1| ATP-dependent DNA helicase [Listeria monocytogenes SLCC5850]
gi|345537301|gb|AEO06741.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes 10403S]
gi|404230886|emb|CBY52290.1| ATP-dependent DNA helicase [Listeria monocytogenes SLCC5850]
Length = 733
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 210/738 (28%), Positives = 331/738 (44%), Gaps = 125/738 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q A PLLI+AG GSGK G++P NILA+TFT
Sbjct: 9 VDGLNPEQ-RRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTNK 67
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ RIG+++G A+ + ISTFHS +++ R +++ F I G + ++I
Sbjct: 68 AAREMKSRIGNLMG-GEAESIWISTFHSMCVRILRRDIDRIGYERNFTIL-DGSDQLSVI 125
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ IL K + G + S+S+ K N+
Sbjct: 126 KG--------ILKEKNVDPKKFEPRG---------------ILASISNAK----NELITA 158
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ +ASG D++ + E Y L+ ALD+ DLI +++L P+V
Sbjct: 159 SEYIKEASG--------FYDKMVGEVYEKYEKKLKKNQALDFDDLIMVTIQLFERVPDVL 210
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ ++ I VDE+QDT+ QY L++ LAS + +VGD DQSI+ + GADIS SF
Sbjct: 211 EYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRFKNLCVVGDSDQSIYGWRGADISNIMSF 270
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K I L NYRST+ I+EAA+ +I++N R + KN+ T N+ G KI + E
Sbjct: 271 EKDYPNAKTILLEENYRSTKRILEAANRVIENNGNR-KPKNLWTSNAEGKKIFYHKALTE 329
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ A+++ KI E +N + + AILYR +V + F + + + + G F
Sbjct: 330 KEEAAYVVMKIQEEVNNSNRPLSDF---AILYRTNAQSRVMEEYFMKSNMAYTMVGGTKF 386
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y +K ++ I+A LR DD R+ + ++ +D ++ ++T S
Sbjct: 387 YDRKEIKDILAYLRLISNNEDDISLTRIIN---VPKRGVGPGTLDKLNNVATTYDLSLFE 443
Query: 708 AACDIFGAKISGTFKRS---------QLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
I A IS + TQ + L E++ +++ + T
Sbjct: 444 VLNRIELAGISPKISKDLVAFHDLIRGFTQMQDFLSVTELVEEILEK--------TGYRA 495
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
M+ + +E Q L ++ +FLS KE D
Sbjct: 496 MLKNERTIEA----------------------QTRLENIDEFLSVTQNFEKE-----NDD 528
Query: 819 KGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
K I L D + + + +VTL T+H +KGLE+ +VF+ E P
Sbjct: 529 KTLIAFL---TDLALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFP 585
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQPSRF 931
+ + +EEERRL YV +TRA ++LF+ LY +N Q SRF
Sbjct: 586 -----HSRAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRMLYGRPSSN----QESRF 636
Query: 932 LKEIPHHLREVQAEQSVQ 949
+ EIP L E+ E ++
Sbjct: 637 IGEIPRDLLELGNENKLK 654
>gi|386050736|ref|YP_005968727.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL R2-561]
gi|386054012|ref|YP_005971570.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes Finland
1998]
gi|404284255|ref|YP_006685152.1| ATP-dependent DNA helicase [Listeria monocytogenes SLCC2372]
gi|405758810|ref|YP_006688086.1| ATP-dependent DNA helicase [Listeria monocytogenes SLCC2479]
gi|346424582|gb|AEO26107.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL R2-561]
gi|346646663|gb|AEO39288.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes Finland
1998]
gi|404233757|emb|CBY55160.1| ATP-dependent DNA helicase [Listeria monocytogenes SLCC2372]
gi|404236692|emb|CBY58094.1| ATP-dependent DNA helicase [Listeria monocytogenes SLCC2479]
Length = 733
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 210/738 (28%), Positives = 331/738 (44%), Gaps = 125/738 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q A PLLI+AG GSGK G++P NILA+TFT
Sbjct: 9 VDGLNPEQ-RRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTNK 67
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ RIG+++G A+ + ISTFHS +++ R +++ F I G + ++I
Sbjct: 68 AAREMKSRIGNLMG-GEAESIWISTFHSMCVRILRRDIDRIGYERNFTIL-DGSDQLSVI 125
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ IL K + G + S+S+ K N+
Sbjct: 126 KG--------ILKEKNVDPKKFEPRG---------------ILASISNAK----NELITA 158
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ +ASG D++ + E Y L+ ALD+ DLI +++L P+V
Sbjct: 159 SEYIKEASG--------FYDKMVGEVYEKYEKKLKKNQALDFDDLIMVTIQLFERVPDVL 210
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ ++ I VDE+QDT+ QY L++ LAS + +VGD DQSI+ + GADIS SF
Sbjct: 211 EYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRFKNLCVVGDSDQSIYGWRGADISNIMSF 270
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K I L NYRST+ I+EAA+ +I++N R + KN+ T N+ G KI + E
Sbjct: 271 EKDYPNAKTILLEENYRSTKRILEAANRVIENNGNR-KPKNLWTSNAEGKKIFYHKALTE 329
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ A+++ KI E +N + + AILYR +V + F + + + + G F
Sbjct: 330 KEEAAYVVMKIQEEVNNSNRPLSDF---AILYRTNAQSRVMEEYFMKSNMAYTMVGGTKF 386
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y +K ++ I+A LR DD R+ + ++ +D ++ ++T S
Sbjct: 387 YDRKEIKDILAYLRLISNNEDDISLTRIVN---VPKRGVGPGTLDKLNNVATTYDLSLFE 443
Query: 708 AACDIFGAKISGTFKRS---------QLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
I A IS + TQ + L E++ +++ + T
Sbjct: 444 VLNRIELAGISPKISKDLVAFHDLIRGFTQMQDFLSVTELVEEILEK--------TGYRA 495
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
M+ + +E Q L ++ +FLS KE D
Sbjct: 496 MLKNERTIEA----------------------QTRLENIDEFLSVTQNFEKE-----NDD 528
Query: 819 KGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
K I L D + + + +VTL T+H +KGLE+ +VF+ E P
Sbjct: 529 KTLIAFL---TDLALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFP 585
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQPSRF 931
+ + +EEERRL YV +TRA ++LF+ LY +N Q SRF
Sbjct: 586 -----HSRAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRMLYGRPSSN----QESRF 636
Query: 932 LKEIPHHLREVQAEQSVQ 949
+ EIP L E+ E ++
Sbjct: 637 IGEIPRDLLELGNENKLK 654
>gi|226224362|ref|YP_002758469.1| ATP-dependent DNA helicase [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|386732498|ref|YP_006205994.1| ATP-dependent DNA helicase [Listeria monocytogenes 07PF0776]
gi|225876824|emb|CAS05533.1| ATP-dependent DNA helicase [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|384391256|gb|AFH80326.1| ATP-dependent DNA helicase [Listeria monocytogenes 07PF0776]
Length = 731
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 210/738 (28%), Positives = 331/738 (44%), Gaps = 125/738 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q A PLLI+AG GSGK G++P NILA+TFT
Sbjct: 7 VDGLNPEQ-RRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ RIG+++G A+ + ISTFHS +++ R +++ F I G + ++I
Sbjct: 66 AAREMKSRIGNLMG-GEAESIWISTFHSMCVRILRRDIDRIGYERNFTIL-DGSDQLSVI 123
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ IL K + G + S+S+ K N+
Sbjct: 124 KG--------ILKEKNVDPKKFEPRG---------------ILASISNAK----NELITA 156
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ +ASG D++ + E Y L+ ALD+ DLI +++L P+V
Sbjct: 157 SEYIKEASG--------FYDKMVGEVYEKYEKKLKKNQALDFDDLIMVTIQLFERVPDVL 208
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ ++ I VDE+QDT+ QY L++ LAS + +VGD DQSI+ + GADIS SF
Sbjct: 209 EYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRFKNLCVVGDSDQSIYGWRGADISNIMSF 268
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K I L NYRST+ I+EAA+ +I++N R + KN+ T N+ G KI + E
Sbjct: 269 EKDYPNAKTILLEENYRSTKRILEAANRVIENNGNR-KPKNLWTSNAEGKKIFYHKALTE 327
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ A+++ KI E +N + + AILYR +V + F + + + + G F
Sbjct: 328 KEEAAYVVMKIQEEVNNSNRPLSDF---AILYRTNAQSRVMEEYFMKSNMAYTMVGGTKF 384
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y +K ++ I+A LR DD R+ + ++ +D ++ ++T S
Sbjct: 385 YDRKEIKDILAYLRLISNNEDDISLTRIVN---VPKRGVGPGTLDKLNNVATTYDLSLFE 441
Query: 708 AACDIFGAKISGTFKRS---------QLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
I A IS + TQ + L E++ +++ + T
Sbjct: 442 VLNRIELAGISPKISKDLVAFHDLIRGFTQMQDFLSVTELVEEILEK--------TGYRA 493
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
M+ + +E Q L ++ +FLS KE D
Sbjct: 494 MLKNERTIEA----------------------QTRLENIDEFLSVTQNFEKE-----NDD 526
Query: 819 KGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
K I L D + + + +VTL T+H +KGLE+ +VF+ E P
Sbjct: 527 KTLIAFL---TDLALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFP 583
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQPSRF 931
+ + +EEERRL YV +TRA ++LF+ LY +N Q SRF
Sbjct: 584 -----HSRAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRMLYGRPSSN----QESRF 634
Query: 932 LKEIPHHLREVQAEQSVQ 949
+ EIP L E+ E ++
Sbjct: 635 IGEIPRDLLELGNENKLK 652
>gi|390955057|ref|YP_006418815.1| DNA/RNA helicase [Aequorivita sublithincola DSM 14238]
gi|390421043|gb|AFL81800.1| DNA/RNA helicase, superfamily I [Aequorivita sublithincola DSM
14238]
Length = 773
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 149/451 (33%), Positives = 234/451 (51%), Gaps = 57/451 (12%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
YL+ LND Q A ++++AG GSGK G+ P NIL++TFT
Sbjct: 4 YLEQLNDAQ-RAPVLQKDGAMIVIAGAGSGKTRVLTFRIAYLMSQGVDPFNILSLTFTNK 62
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++RI IVG + AK L + TFHS ++ R A+KL S F IY Q +++I
Sbjct: 63 AAREMKNRISKIVGSSEAKNLWMGTFHSIFAKILRFEADKLGYPSNFTIY-DTQDSQSVI 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLF---MMNAMLFFSMSSFKLCQYNKF 406
A V+K + D Y R S + ++ +FS S
Sbjct: 122 RA----------VIKEMHLDKDVYKYKQVYSRISSYKNSLITVKAYFSNSDL-------M 164
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
E D M A+ ++GD I ++Y A+D+ DL+ + +LL+ FP
Sbjct: 165 EADAM----------AKMPRLGD-----IYKSYVDKCFKAGAMDFDDLLLKTNELLTRFP 209
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGF 525
EV +YQ+ ++ I+VDE+QDT+ QY +++ L+ I +VGDD QSI++F GA+I+
Sbjct: 210 EVLAKYQNRFRYILVDEYQDTNHSQYLIVRALSDKFQNICVVGDDAQSIYAFRGANINNI 269
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
+F+KD+ K RL +NYRST+ IV AA+++I+ N R + K V T N G+KI++
Sbjct: 270 LNFQKDYDEVKVFRLEQNYRSTKNIVNAANNIIEKNKTRLE-KVVWTANDEGAKILVNRT 328
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-G 644
+ + F+ I E+ N G AILYR + + A R++ IP+ I+ G
Sbjct: 329 MTDGDEGRFVASSIFENKMNHQ---MKDGDFAILYRTNAQSRAMEDALRKKDIPYRIYGG 385
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRV 675
++FY++K ++ +++ LR L D+ +RV
Sbjct: 386 LSFYQRKEIKDVLSYLRLVLNPKDEEALKRV 416
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 8/98 (8%)
Query: 847 NENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMT 906
+ + V L T+H +KGLE+ V++ E P +G + +EEERRL YVA+T
Sbjct: 559 DSDRVALMTVHLAKGLEFPYVYIVGMEEDLFP-----SGMSMNTRSELEEERRLFYVAVT 613
Query: 907 RARKKLFILYVMMDANWQLL---QPSRFLKEIPHHLRE 941
RA K+ ++ Y W L +PSRF++EI E
Sbjct: 614 RAEKQAYLTYTQSRYRWGKLIDAEPSRFIEEIDESFLE 651
>gi|432334133|ref|ZP_19585848.1| ATP-dependent DNA helicase UvrD1, partial [Rhodococcus
wratislaviensis IFP 2016]
gi|430778950|gb|ELB94158.1| ATP-dependent DNA helicase UvrD1, partial [Rhodococcus
wratislaviensis IFP 2016]
Length = 621
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 201/666 (30%), Positives = 305/666 (45%), Gaps = 101/666 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
LQ LN Q EA +PLLIVAG GSGK G+ P ILA+TFT
Sbjct: 3 LQGLNPPQREAVV-HAGSPLLIVAGAGSGKTAVLTRRIAYLLAERGVMPGQILAITFTNK 61
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGHGQQRRAI 348
AA+EMR+R+ +VG A + +STFHS +++ R+ A L S F IY RR +
Sbjct: 62 AAAEMRERVAHLVGP-RANSIWVSTFHSSCVRILRAQAALLPGLNSNFSIYDADDSRRLL 120
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
++ + + KR S +L T H ++ L
Sbjct: 121 T----MIAKDLNIDTKRYSARLLAT--HISNLKNELV----------------------- 151
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D + + K PAE ++ A + +Y LRS NALD+ DLI +V +L FP+V
Sbjct: 152 DPEQASADADKDPAELPRLI----AKVYGHYQQRLRSANALDFDDLIGETVAMLQAFPQV 207
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQIL---------ASHN----RITIVGDDDQSIF 515
+ Y+ ++ ++VDE+QDT+ QY L++ L A H + +VGD DQSI+
Sbjct: 208 AEYYRRRFRHVLVDEYQDTNHAQYMLVRELVGGTADGEDADHRVAPAELCVVGDADQSIY 267
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I + F +D+ + + I L +NYRST+ I+ AA+S+I N R + K + TD+
Sbjct: 268 AFRGATIRNIEEFERDYPDARTILLEQNYRSTQNILSAANSVISKNTGRRE-KRLWTDSG 326
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G I NE + +F+ +I + +G A +G +A+ YR S + + F
Sbjct: 327 EGELITGYVADNEHDEASFVASEIDKLVDSGDA---KFGDVAVFYRTNNSSRALEEIFIR 383
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY +K VR I+A LR D RR+ ++ + D
Sbjct: 384 LGVPYKVVGGVRFYERKEVRDIVAYLRVLANEDDTVSLRRILNT-------PRRGIGDRA 436
Query: 695 DKISTI----RKCSFISAACDIFGAKISGTFKRSQ--------LTQGRKVLLTLE-MISK 741
+ + R SF A D ++ RSQ L G +V+L E +
Sbjct: 437 EACVAVHSEQRGISFAEALRDGGEGRVPLLNTRSQKAIASFLELMDGLRVMLPPETTVDD 496
Query: 742 LVRREPSISAVITSVANMVPQK--YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTD 799
+V P I V V ++ Y E A D G L+ N+L SV + +D +
Sbjct: 497 VV---PDQLGDIGDVVEAVLERTGYRAELAASSDPQDGARLDNLNELVSVAREFSSDARN 553
Query: 800 FLSTKFTAAKEEGNVD-QDKKGCINVLKAFIDYISERETEHFRTQRHDN-ENSVTLTTIH 857
+ E+G+VD +D + L AF++ +S Q DN E VTL T+H
Sbjct: 554 --AAGLVEPPEDGDVDARDGEPDPGSLAAFLERVSLVADSD---QLPDNDEGVVTLMTLH 608
Query: 858 QSKGLE 863
+KGL+
Sbjct: 609 TAKGLD 614
>gi|299771291|ref|YP_003733317.1| ATP-dependent DNA helicase rep [Acinetobacter oleivorans DR1]
gi|298701379|gb|ADI91944.1| ATP-dependent DNA helicase rep [Acinetobacter oleivorans DR1]
Length = 679
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 198/720 (27%), Positives = 335/720 (46%), Gaps = 112/720 (15%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAAS 292
LN++Q E A PLL++AG GSGK I I AMTFT AA
Sbjct: 7 LNNKQ-EEAMKYTQGPLLVLAGAGSGKTSVITRKIAYLVQHCRIPAHRITAMTFTNKAAR 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ ++ + +K L++STFH+F L L R + L + F +I++A
Sbjct: 66 EMKERVTKLLSREESKGLSVSTFHTFGLNLLRLELKNLPLKANF----------SILDAD 115
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM- 411
KRI D++ D G L A +S +K D +
Sbjct: 116 D---------CKRILMDLMHRDNLSGAESKELI---AKAMKKISDWK--------NDLIV 155
Query: 412 -DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
+ A ++ +TP + + A + + Y LR+ NA+D+ DLI +LL EV
Sbjct: 156 PEQAHSTCETPEDVQ------FAHLYQLYERNLRAYNAVDFDDLIVMPTRLLQENAEVRD 209
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFR 529
++Q+ + ++VDE+QDT+ QY L+++L + T VGDDDQSI+++ GA +
Sbjct: 210 KWQNRVRYLLVDEYQDTNTAQYILVKLLVGVMGQFTAVGDDDQSIYAWRGAKPENMALLK 269
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
+DF N + I+L +NYRST I++AA+ +IQ+N K + +D HG I I C N+D
Sbjct: 270 QDFPNLQIIKLEQNYRSTSRILKAANCVIQNNPHIFD-KKLWSDKGHGEVIRIITCRNDD 328
Query: 590 AQCAFIIDKILEHA-SNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAF 647
+ ++ +L H NG ++ A+LYR +V +T R+ +IP+ + G +F
Sbjct: 329 DEAERVVKDLLTHKLMNGK----NWKDYAVLYRGNFQARVLETQLRQMQIPYKLSGGTSF 384
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI-----DHIDKISTIRK 702
+ + ++ +++ LR + DD + R+ KR I + + S
Sbjct: 385 FARAEIKDVMSYLRLIINPEDDSAFLRIINT--------PKRAIGPVTLEKLGLFSQENN 436
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ D + + +QL + + T +L+ + + V +
Sbjct: 437 LSLLGASADQRLSMVLPKKAETQLHEFADFIATF--TRELLEDDEPVPKVRQMMNEAGYM 494
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
Y+ EQ A + KL N +N L + +Q L+ D D+K
Sbjct: 495 DYVREQSATPAQEKSKLDNIEN-LFTSIQNLINRAEDV----------------DEKNIE 537
Query: 823 NVLKAFI--DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
+V++ + D + +++ E ++ + V L T+H +KGLE+ V++ E +P
Sbjct: 538 SVIRKLVLLDLLEQQQEE-------EDTDKVNLLTLHAAKGLEFPYVYIMGLEEELLP-- 588
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDAN---WQLLQPSRFLKEIPH 937
H+ + A ++EEERRL+YV +TRAR+ L + N + + PSRFL E+P
Sbjct: 589 HKNSIA----AETIEEERRLMYVGITRARQGLTLTLAEQRKNGGQMKQMTPSRFLDELPQ 644
>gi|331270358|ref|YP_004396850.1| UvrD/REP helicase [Clostridium botulinum BKT015925]
gi|329126908|gb|AEB76853.1| UvrD/REP helicase [Clostridium botulinum BKT015925]
Length = 761
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 208/733 (28%), Positives = 351/733 (47%), Gaps = 125/733 (17%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN++Q +AA + P+L++AG GSGK GI NILA+TFT AA
Sbjct: 7 LNEEQYKAATA-IEGPVLVLAGAGSGKTRVLTYRIAHMIEDLGIPQYNILAITFTNKAAG 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM+DRI +V + + +STFHS +++ R +KL + F IY Q+ I + +
Sbjct: 66 EMKDRIKKLVSNSI-DSMWVSTFHSCCVRILRREIDKLGYSKNFAIYDSSDQKNLIKQCM 124
Query: 353 RLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
+ L N+K + K I + + G + +L +Y K
Sbjct: 125 KELNINDKDINEKEIISKI-------GKQKDNLITAE-------------EYKK------ 158
Query: 412 DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQE 471
+ +FRK ++I L Y L++ NALD+ DLI +V+L P+V +
Sbjct: 159 -------RNERDFRK--NKIADVYLL-YQKKLKNSNALDFDDLIFKTVELFKKNPDVLEF 208
Query: 472 YQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRK 530
YQ+ +K I+VDE+QDT+ QY L+++LAS H I +VGDDDQ I+ + GADI F
Sbjct: 209 YQNKFKYIMVDEYQDTNKTQYQLVKMLASAHRNIFVVGDDDQCIYQWRGADIKNILDFEV 268
Query: 531 DFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDA 590
D+ I+L NYRS I+ AA+++I+HN +R K ++T NS G KI I +++
Sbjct: 269 DYPEATVIKLEENYRSKANILNAANTVIKHNSQRKN-KVLRTQNSDGEKIKIYRAYSDID 327
Query: 591 QCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFYR 649
+ F ++I ++ AILYR ++F+ F +R IP+ I G+ FY
Sbjct: 328 EGIFTANEIKRLIKKEDR---NFKDFAILYRTNAQSRMFEDVFMKRDIPYRIIGGLKFYD 384
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDH--IDKI----STIRKC 703
+K ++ I A L+ DD +R+ KR I + KI + + +C
Sbjct: 385 RKEIKDITAYLKFINNLQDDISLKRIINV--------PKRAIGAATVSKIQEFANYMDEC 436
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
+ S D+ I G KR+ + + +I+ R + + SV+N++ +
Sbjct: 437 MY-SVLLDV--ENIPGLSKRTISSINK----FTSLINGFTRTKDKV-----SVSNLIQE- 483
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
+LE + K L + N++ + + + ++ + +S AA E N +DK
Sbjct: 484 -ILESTGYM-----KELKDSNEIEDISR--IENIKELVS----AAVEFENTSEDKS---- 527
Query: 824 VLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
L AF++ I+ + +++ ++ ++ + T+H +KGLE+ +VF+ P
Sbjct: 528 -LSAFLEKITLVSDVDNY----DEDTDTTVMMTLHSAKGLEFPVVFMVGMENGIFPGAQS 582
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEI 935
E + +EE RRL YV +TRA+++L+ M A+ + + S F+ EI
Sbjct: 583 L-----ENFSEMEESRRLCYVGITRAKEQLY----MTSASTRKVFGRTVAYSESDFINEI 633
Query: 936 PHHLREVQAEQSV 948
L+E+ E+ +
Sbjct: 634 SPSLKELVKEERI 646
>gi|299144359|ref|ZP_07037439.1| ATP-dependent DNA helicase PcrA [Peptoniphilus sp. oral taxon 386
str. F0131]
gi|298518844|gb|EFI42583.1| ATP-dependent DNA helicase PcrA [Peptoniphilus sp. oral taxon 386
str. F0131]
Length = 730
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 220/775 (28%), Positives = 359/775 (46%), Gaps = 134/775 (17%)
Query: 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAA 290
+ LN++Q EA P+LI+AG GSGK + PS+ILA+TFT A
Sbjct: 4 RDLNNKQSEALL-KTEGPVLILAGAGSGKTKVVTNKIAYLIDEKRVYPSSILAITFTNKA 62
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIE 350
A+EM++R+ ++ + I TFHS L++ R + E+++ +S F IY Q I +
Sbjct: 63 ANEMKERVAKLID-VNVDAMWIGTFHSICLRILRRNIERIDYSSNFSIYDRDDQNTVIRD 121
Query: 351 AVRLLENEKIL-----VVKRISTDMLTTDGHFGYMRASLFM-MNAMLFFSMSSFKLCQYN 404
++ L K + ++ +IS ++ D ++ F+ N M FF+
Sbjct: 122 CIKELNLNKEMYKNKSIIAKIS-ELKNQD-----IKPDEFINANYMDFFN---------- 165
Query: 405 KFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLST 464
R +G+ I Y L+ NALD+ D++ +V+L
Sbjct: 166 --------------------RNVGE-----IYNLYEKKLKDNNALDFDDILIKTVELFEN 200
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL--ASHNRITIVGDDDQSIFSFNGADI 522
++ YQD +K I VDE+QDT+ +QY L+++L AS N +T+VGD+DQSI+ + GADI
Sbjct: 201 NEDIKNYYQDKFKYIFVDEYQDTNMIQYRLIKLLCNASPN-LTVVGDNDQSIYKWRGADI 259
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
S +F KDF + K I L +NYRST I+ A+S+I++N R KN+ TDN G ++
Sbjct: 260 SNILNFEKDFKDAKVILLEQNYRSTSKILNVANSVIKNNGNRKD-KNLWTDNGVGEDVVY 318
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI 642
+ + + + K+L+ G A + +AILYR + F+ A KIP+ I
Sbjct: 319 RVFRHSQEEEQAVTTKMLQLNYKGHA----FSDMAILYRTNAQSRGFEEALIREKIPYKI 374
Query: 643 -HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKIST 699
G+ FY +K V+ IIA L+ DD R+ KR I I+ +S
Sbjct: 375 VGGLRFYDRKEVKDIIAYLKVIQNTADDVAINRIINV--------PKRGIGAQSIEDMSK 426
Query: 700 IRKCSFISAACDIFGAKISGTFKRSQLT----QGRKVLLTLEMISKLVRREPSISAVITS 755
+FIS +F I G + QL + K L + +L +E S+S +I
Sbjct: 427 YADENFIS----LFSV-IDGIEENEQLNLRSKKNVKEFANLINLLRLNAQELSVSKLI-- 479
Query: 756 VANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVD 815
+K + E + D + + + RS + ++ + +ST VD
Sbjct: 480 ------EKVIYESGYISDLEAENTV----EARSRID----NIKELISTA---------VD 516
Query: 816 QDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANET 875
++ + L+ F+ IS + + ++V L TIH +KGLE+ IVF+ E
Sbjct: 517 FERNNPLGNLEEFLSGISLLSDVD---KTSPDASAVKLMTIHSAKGLEFKIVFLVGMEEG 573
Query: 876 EIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQP---SRFL 932
P + +EEERRL YV +TRA K L+I + P SRF+
Sbjct: 574 LFPTSRALDDE-----EDIEEERRLCYVGVTRAEKYLYISSSQTRTLYGKTSPCLESRFI 628
Query: 933 KEIPHHLREVQAEQSVQDQHENIPEGTAQFTIN------LPREENCCETDLVSTD 981
KE+ + ++ E+ + +N+ E + + N +P++E + D+ D
Sbjct: 629 KEMEDTITKIIPEKETYESKKNLVEVSDFISYNANRVKSVPKKEKKTDVDVKVGD 683
>gi|16803799|ref|NP_465284.1| ATP-dependent DNA helicase [Listeria monocytogenes EGD-e]
gi|16411213|emb|CAC99837.1| ATP-dependent DNA helicase [Listeria monocytogenes EGD-e]
Length = 731
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 210/738 (28%), Positives = 331/738 (44%), Gaps = 125/738 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q A PLLI+AG GSGK G++P NILA+TFT
Sbjct: 7 VDGLNPEQ-RRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ RIG+++G A+ + ISTFHS +++ R +++ F I G + ++I
Sbjct: 66 AAREMKSRIGNLMG-GEAESIWISTFHSMCVRILRRDIDRIGYERNFTIL-DGSDQLSVI 123
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ IL K + G + S+S+ K N+
Sbjct: 124 KG--------ILKEKNVDPKKFEPRG---------------ILASISNAK----NELITA 156
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ +ASG D++ + E Y L+ ALD+ DLI +++L P+V
Sbjct: 157 SEYIKEASG--------FYDKMVGEVYEKYEKKLKKNQALDFDDLIMVTIQLFERVPDVL 208
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ ++ I VDE+QDT+ QY L++ LAS + +VGD DQSI+ + GADIS SF
Sbjct: 209 EYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRFKNLCVVGDSDQSIYGWRGADISNIMSF 268
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K I L NYRST+ I+EAA+ +I++N R + KN+ T N+ G KI + E
Sbjct: 269 EKDYPNAKTILLEENYRSTKRILEAANRVIENNGNR-KPKNLWTSNAEGKKIFYHKALTE 327
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ A+++ KI E +N + + AILYR +V + F + + + + G F
Sbjct: 328 KEEAAYVVMKIQEEVNNSNRPLSDF---AILYRTNAQSRVMEEYFMKSNMAYTMVGGTKF 384
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y +K ++ I+A LR DD R+ + ++ +D ++ ++T S
Sbjct: 385 YDRKEIKDILAYLRLISNNEDDISLTRIVN---VPKRGVGPGTLDKLNNVATTYDLSLFE 441
Query: 708 AACDIFGAKISGTFKRS---------QLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
I A IS + TQ + L E++ +++ + T
Sbjct: 442 VLNRIELAGISPKISKDLVAFHDLIRGFTQMQDFLSVTELVEEILEK--------TGYRA 493
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
M+ + +E Q L ++ +FLS KE D
Sbjct: 494 MLKNERTIEA----------------------QTRLENIDEFLSVTQNFEKE-----NDD 526
Query: 819 KGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
K I L D + + + +VTL T+H +KGLE+ +VF+ E P
Sbjct: 527 KTLIAFL---TDLALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFP 583
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQPSRF 931
+ + +EEERRL YV +TRA ++LF+ LY +N Q SRF
Sbjct: 584 -----HSRAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRMLYGRPSSN----QESRF 634
Query: 932 LKEIPHHLREVQAEQSVQ 949
+ EIP L E+ E ++
Sbjct: 635 IGEIPRDLLELGNENKLK 652
>gi|116617682|ref|YP_818053.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|116096529|gb|ABJ61680.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
Length = 766
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 204/747 (27%), Positives = 338/747 (45%), Gaps = 117/747 (15%)
Query: 227 DTIQTIKTQNMPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK------------ 274
+ I T K MP E +Q +ND+Q EA PLLI+AG GSGK
Sbjct: 8 EVIFTSKDIKMPIE--TLIQGMNDKQSEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAHLV 64
Query: 275 ---GISPSNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLE 331
+ P ILA+TFT AA EMR+RI +V A+E+ +STFH+ ++++ R E++
Sbjct: 65 QDKNVYPWRILAITFTNKAAREMRERIAQLVDPEIAREIWVSTFHAMAVRILRRDGERIG 124
Query: 332 RTSEFLIYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAML 391
F I QR ++KR+ D+ + + NA
Sbjct: 125 LARNFTIIDTSAQR---------------TLMKRVINDLNLDTNQYDPRTILGTVSNA-- 167
Query: 392 FFSMSSFKLCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDY 451
++ M AKA K + +E A + Y LR ++D+
Sbjct: 168 ----------------KNDMLTAKAYAKQAG---NVYEETVAEVYAAYQAELRRAQSVDF 208
Query: 452 HDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDD 510
DLI ++ L P+V + YQ+ ++ + VDE+QDT+ QY+++ +LA +R + +VGD
Sbjct: 209 DDLIMSTIDLFKQAPDVLERYQNQFEYLHVDEYQDTNDAQYTIVNLLAKRSRNLAVVGDA 268
Query: 511 DQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNV 570
DQSI+ + GA+++ +F KD+ + + L +NYRST+ I++AA+++I +N +R K++
Sbjct: 269 DQSIYGWRGANMNNILNFEKDYPDAHTVLLEQNYRSTQNILDAANAVINNNNERID-KSL 327
Query: 571 QTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQ 630
T+N G KI E + F++ I + A +Y A+LYR + +
Sbjct: 328 WTENGKGDKITYYRAQTERDEANFVLANIQKSRQEKNA---AYSDFAVLYRTNAQSRGIE 384
Query: 631 TAFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR 689
A + +P+ + G FY +K + I++ + D+ + RV E K+
Sbjct: 385 EALVKANMPYTMVGGHKFYERKEILDIMSYMNLMTNPADNAAFERVV-------NEPKRG 437
Query: 690 V----IDHIDKISTIRKCSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVR 744
+ I+ + + S++ A +I +I+ K++ EM+ L
Sbjct: 438 IGATSINRLRDFANRMNLSYMGAIENIELAPEITA-------KAASKLIQFAEMMHNL-- 488
Query: 745 REPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTK 804
R+ + +T +A + K Q+ L E ND S Q L ++ +FLS
Sbjct: 489 RQQTEFLTVTELAELAMTKSGYRQK----------LAEKNDPES--QGRLENLEEFLSV- 535
Query: 805 FTAAKE-EGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLE 863
KE + + D ++ + D++S + + +VTL T+H +KGLE
Sbjct: 536 ---TKEFDSKYNPDDPESVDPM---TDFLSSTALMSDLDDFEEGDGAVTLMTLHAAKGLE 589
Query: 864 WDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLF-------ILY 916
+ +VF+ E PL +EEERRL YV +TRA KKL+ +LY
Sbjct: 590 FPVVFLVGMEEGIFPLSRAM-----MDDDQLEEERRLAYVGITRAMKKLYLTNAFSRLLY 644
Query: 917 VMMDANWQLLQPSRFLKEIPHHLREVQ 943
AN +PSRF+ EI L + Q
Sbjct: 645 GRTQAN----EPSRFIDEISSDLLDTQ 667
>gi|265753474|ref|ZP_06088829.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|263235188|gb|EEZ20712.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 796
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 207/736 (28%), Positives = 347/736 (47%), Gaps = 111/736 (15%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFT 287
+ YL+ LN+ Q +A + P L++AG GSGK G +P +ILA+TFT
Sbjct: 2 TNYLEELNESQRDAVLYN-EGPSLVIAGAGSGKTRVLTYKIAYLLEQGYTPWSILALTFT 60
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM++RI VG A+ L + TFHS ++ R A+ + +S F IY +
Sbjct: 61 NKAAREMKERIVRQVGD-QARYLWMGTFHSIFSRILRCEAQVIGFSSNFTIYDSSDSKSL 119
Query: 348 IIEAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
I V+ ++ ++K I + H + A ++ NA L+ QY+
Sbjct: 120 IKSIVKEMQLDDKTYKSGSIQARISNAKNHLVFPDA--YVSNAELY---------QYD-- 166
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
+ K PA I Y R +A+D+ DL+ + L P
Sbjct: 167 ---------LNAKVPAT---------RDIYRQYWERCRQSDAMDFDDLLLYTYMLFRDHP 208
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSL-LQILASHNRITIVGDDDQSIFSFNGADISGF 525
E+ ++Y + ++ ++VDE+QDT+ Q+S+ LQ+ H R+ +VGDD QSI+SF GA+I
Sbjct: 209 EICRKYAEQFRYVLVDEYQDTNFAQHSIVLQLTQEHQRVCVVGDDAQSIYSFRGANIDNI 268
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
F + + K +L +NYRST+ IV AA+SLI+ N ++ + K V ++ + G I +
Sbjct: 269 LKFTQLYKGAKLFKLEQNYRSTQTIVCAANSLIEKNSEQIK-KEVFSEKAKGEPIGVFNA 327
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-G 644
+++ + + ++I++ S SY AILYR ++F+ A R+R +P+ I+ G
Sbjct: 328 YSDVEEGEIVANQIVKLRSR---EHYSYNDFAILYRTNAQSRIFEEALRKRSLPYKIYGG 384
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCS 704
++FY++K ++ +I+ R + D+ ++RV R I +T+ K
Sbjct: 385 LSFYQRKEIKDVISYFRLAVNPNDEEAFKRVLNY--------PARGIGD----TTLNKVI 432
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKY 764
+A + + L + + L+ +LV+ S +P+K
Sbjct: 433 DAAAQHHVSLWMVLEEPLAYGLNINKGMHTKLQGFRELVK----------SFIVEIPKKN 482
Query: 765 LLEQRAVVDFDGGKLLNE---DNDLRSV-----LQYLLADVTDFLSTKFTAAKEEGNVDQ 816
E A++ G ++NE ND ++ ++ L+ + DF + + +EEGN
Sbjct: 483 AYELGAMIVRQSG-IMNEIYQSNDPENLSRQENIEELINGMHDFCAIR----EEEGNE-- 535
Query: 817 DKKGCINVLKAFIDYISERE--TEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
N+L D++SE T+ + D E + L TIH +KGLE+ VFV E
Sbjct: 536 ------NIL--LTDFLSEVSLLTDQDNEKEEDAE-KIILMTIHSAKGLEFKNVFVVGLEE 586
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSRF 931
P N +EEERRL YVA+TRA + ++ + + ++ PSRF
Sbjct: 587 NLFPSALSLNSY-----KELEEERRLFYVAITRAEEHCYLSFAKSRFKYGKMEFSSPSRF 641
Query: 932 LKEIP-HHLREVQAEQ 946
LK+I H L+ Q EQ
Sbjct: 642 LKDIDVHFLKLPQEEQ 657
>gi|50084109|ref|YP_045619.1| ATP-dependent DNA helicase [Acinetobacter sp. ADP1]
gi|49530085|emb|CAG67797.1| ATP-dependent DNA helicase [Acinetobacter sp. ADP1]
Length = 679
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 199/718 (27%), Positives = 330/718 (45%), Gaps = 108/718 (15%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAAS 292
LND+Q EA PLL++AG GSGK I I AMTFT AA
Sbjct: 7 LNDKQQEA-MKYTQGPLLVLAGAGSGKTSVITQKIAYLVKQCRIPAHRITAMTFTNKAAR 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ ++ + AK L++STFH+F L L R + + F I
Sbjct: 66 EMKERVAKLLSREDAKGLSVSTFHTFGLNLLRLELKHTPLKNNFSILDSDD--------- 116
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
KRI D++ D G L A +S +K + +
Sbjct: 117 ----------CKRILMDLMQRDNLSGAESKELI---AKAMKKISDWK---------NDLI 154
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
V + + T + D A + + Y LR+ NA+D+ DLI +LL EV ++
Sbjct: 155 VPEQAHST---CETVEDVQFAHLYQLYERNLRAYNAVDFDDLIVLPTRLLQENAEVRDKW 211
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L+++L + T VGDDDQSI+++ GA ++D
Sbjct: 212 QNRTRYLLVDEYQDTNTAQYILVKLLVGVMGQFTAVGDDDQSIYAWRGAKPENMALLKED 271
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F N K I+L +NYRST I++AA+++I++N K + +D HG I I C N+D +
Sbjct: 272 FPNLKVIKLEQNYRSTSRILKAANAVIENNPHIFD-KKLWSDKGHGEVIRIITCRNDDDE 330
Query: 592 CAFIIDKILEHA-SNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYR 649
++ ++ H NG ++ A+LYR +V +T R+ +IP+ + G +F+
Sbjct: 331 SERVVKDLMTHKLMNGK----NWKDYAVLYRGNFQARVLETQLRQMQIPYKLSGGQSFFA 386
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI-----DHIDKISTIRKCS 704
+ ++ +++ LR + DD + R+ KR I + + S S
Sbjct: 387 RAEIKDVMSYLRLIINPEDDSAFLRIINT--------PKRAIGPVTLEKLGLFSQENHLS 438
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKY 764
++AA D + + SQL + + T +L+ + + V + Y
Sbjct: 439 LLAAAADQRLSMVIPKKAASQLHEFADFITTF--TRELLDDDEPVPKVRQMMNEAGYIDY 496
Query: 765 LLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINV 824
+ EQ A + KL N ++ L S +Q LL D D+K +V
Sbjct: 497 IREQAATPAQEKTKLDNIES-LFSSIQNLLNRTEDV----------------DEKNIESV 539
Query: 825 LKAFI--DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
++ + D + +++ E ++ + V L T+H +KGLE+ V++ E +P H+
Sbjct: 540 IRKLVLLDMLEQQQEE-------EDTDKVNLLTLHAAKGLEFPFVYIMGLEEELLP--HK 590
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDAN---WQLLQPSRFLKEIPH 937
+ A + ++EEERRL+YV +TRAR+ L + N + + PSRFL E+P
Sbjct: 591 NSIAAD----TIEEERRLMYVGITRARQGLTLTLAEQRKNGGQMKQMTPSRFLDELPQ 644
>gi|418182702|ref|ZP_12819263.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA43380]
gi|353850939|gb|EHE30943.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA43380]
Length = 756
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 213/728 (29%), Positives = 334/728 (45%), Gaps = 119/728 (16%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAAS 292
+ND+Q EA PLLI+AG GSGK ++P NILA+TFT AA
Sbjct: 1 MNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAR 59
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 60 EMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT------ 111
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
++KRI L D R L + S + L D
Sbjct: 112 ---------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID---------D 146
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
VA A A+ + +I A Y LR ++D+ DLI +++L P+V Y
Sbjct: 147 VAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVLTYY 201
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F KD
Sbjct: 202 QQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDFEKD 261
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ +E +
Sbjct: 262 YPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRADDELDE 320
Query: 592 CAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFY 648
F+ I L + N + A+LYR + + A + IP+ + G FY
Sbjct: 321 AVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKFY 375
Query: 649 RKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRKC 703
+K +R IIA L D+ + R+ E KR ++ I + ++
Sbjct: 376 SRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGPGTVEKIRDFANLQNM 427
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
S + A+ +I + I G +S +L E + L SI+ ++ SV
Sbjct: 428 SMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITELVESV------- 475
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
LE+ VD +LN L S + + ++ +FLS + +V +++ G ++
Sbjct: 476 --LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTTDVTEEETG-LD 524
Query: 824 VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 525 KLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGMEENVFPLSR-- 579
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEIP 936
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+ EI
Sbjct: 580 ---ATEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFINEIS 632
Query: 937 HHLREVQA 944
L E Q
Sbjct: 633 SDLLEYQG 640
>gi|91203329|emb|CAJ72968.1| strongly similar to ATP-dependent DNA helicase [Candidatus Kuenenia
stuttgartiensis]
Length = 729
Score = 221 bits (562), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 151/448 (33%), Positives = 223/448 (49%), Gaps = 61/448 (13%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTT 288
K+L+ + D+Q EA + PLLIVAG GSGK GISP NILA+TFT
Sbjct: 2 KFLEDVTDKQREAIT-HIDGPLLIVAGAGSGKTRVITRRIGYLMSEGISPYNILAITFTN 60
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA+EM +R+ ++ K + +STFH ++ R E L + +F IY Q I
Sbjct: 61 KAANEMAERVKKF---SSHKGMWVSTFHKMCSRILRKDIELLGYSKDFTIYDTVDQLNRI 117
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
K I D+ H+ + NA KL + +F
Sbjct: 118 ---------------KSIMADLEIDTAHWKPRSIISSISNA-------KNKLIDHERFAA 155
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D+ ++ A I + Y+ +L+S NALD+ DL+ +V+LL P+V
Sbjct: 156 TASDIYH--------------QMVAKIYKKYDTMLKSGNALDFDDLLIKTVELLKIRPDV 201
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDS 527
YQ+ +K I++DE+QDT+ +QY++ ++LA + I + GD DQSI+ + GAD+
Sbjct: 202 LSSYQERFKYILIDEYQDTNFVQYAISRLLAQKYKNICVTGDPDQSIYGWRGADLRNIMD 261
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KD+ + + + L +NYRST+ I+ AASS+IQ N R Q K + T+N HG KI C N
Sbjct: 262 FEKDYPDARVVLLEQNYRSTKNILLAASSVIQKNKYRKQ-KEIWTENEHGEKIKTIHCEN 320
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVA 646
E ++ I I NG Y IA+ YR + + A R IP+ I GV
Sbjct: 321 EHSEAEEIAKTIRALRGNG----IKYTEIALFYRTNAQSRTLEIALRNAGIPYVIVGGVE 376
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRR 674
FYR+K ++ I+A +R + CDD R
Sbjct: 377 FYRRKEIKDILAYIRLCVNPCDDSALER 404
Score = 49.3 bits (116), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 8/93 (8%)
Query: 846 DNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAM 905
D +VTL T+H +KGLE+ +VF++ E +P + +EEERRL YV +
Sbjct: 540 DLAEAVTLMTLHTAKGLEFPVVFISGMEEGLLP-----HSESRISEEEIEEERRLCYVGI 594
Query: 906 TRARKKLFILYVMMDANWQLLQP---SRFLKEI 935
TRA K+LF+ Y + L P SRFL EI
Sbjct: 595 TRAMKRLFLTYTKRRMRYGQLIPCVASRFLDEI 627
>gi|27905008|ref|NP_778134.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
gi|32129937|sp|Q89A21.1|REP_BUCBP RecName: Full=ATP-dependent DNA helicase rep
gi|27904406|gb|AAO27239.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 670
Score = 221 bits (562), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 207/721 (28%), Positives = 328/721 (45%), Gaps = 118/721 (16%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAAS 292
N+ Q + A +S P LI+AG GSGK P I A+TFT AA
Sbjct: 3 FNEHQ-KKAISYISGPCLILAGAGSGKTRVIINKIVHLIKICHFDPKCITAITFTNKAAC 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM+ RI +++ + + ISTFH+ L++ +S E L S F I+ Q + E V
Sbjct: 62 EMKSRILNVLSVNVSNLVKISTFHALGLEIIKSEIELLNIKSNFTIFDEQDQISILQEIV 121
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFK---LC--QYNKFE 407
E V++I S+S++K LC Q NK
Sbjct: 122 ---SKEDRSFVRQIRQ-------------------------SISNWKNKLLCPNQVNKIS 153
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
++ FR E YN L+S N LD+ DLI LL
Sbjct: 154 NSSIEFK--------FFR---------YYELYNAYLKSSNILDFDDLIFLPTILLRDNKL 196
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFD 526
+ + D K ++VDE+QDT+ +QY L+++L+S + T+VGDDDQSI+S+ GA+I F+
Sbjct: 197 SRERWNDKIKYLLVDEYQDTNFIQYKLIKLLSSKRSNFTLVGDDDQSIYSWRGANIHNFE 256
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
S + D+ N + I + NYRS+ I++ A++LI +N+ K + ++ +GS + I
Sbjct: 257 SLKHDYPNLRTIIMQHNYRSSGRILKVANALISNNLHFFN-KKLFSNLDYGSIVEIISAK 315
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGV 645
NE+ + I+ ++ H SN A Y AILYR K+F+ + KIP+ I +
Sbjct: 316 NEEDEARVILQTLMLHKSNYNA---QYKDYAILYRSNYQVKIFEKFLIKFKIPYKILANI 372
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSF 705
+F+ + ++ +IA LR + D+ + RV L + + + + S R SF
Sbjct: 373 SFFSRPEIKDLIAYLRLIINPDDNAAFLRVVNRPL---RGIGAVTLQKLKEWSKKRNQSF 429
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYL 765
A+ DI + L ++ + ++ IS ++ P I + VA + +K+L
Sbjct: 430 FMASLDI---GLESILPVHNLKSLQEFVYLIQTISYQIQLNP-IEVLEKLVATIKYEKWL 485
Query: 766 LEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVL 825
+ + N L ++ L + + S KF V+
Sbjct: 486 MRSLKFSKLYVASIKNISIVLNWIINELKYKIMN--SKKF------------------VM 525
Query: 826 KAFIDYISERETEHFRTQRHDNE------NSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
K ID ISE F Q NE + V L T+H SKGLE+ VF+ E +P
Sbjct: 526 KYLIDIISE-----FILQNSLNEDIVINNDYVQLMTLHASKGLEFLYVFIVGVEEGVLPY 580
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEIP 936
+ E +++EERRL YV +TRA+KKLF+ Y + + ++ +PSRFL+E+P
Sbjct: 581 ---YRNTTME--NNIDEERRLAYVGITRAQKKLFLSYAIQRCQYGVVINTKPSRFLRELP 635
Query: 937 H 937
Sbjct: 636 Q 636
>gi|262280027|ref|ZP_06057812.1| superfamily I DNA and RNA helicase [Acinetobacter calcoaceticus
RUH2202]
gi|262260378|gb|EEY79111.1| superfamily I DNA and RNA helicase [Acinetobacter calcoaceticus
RUH2202]
Length = 679
Score = 221 bits (562), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 198/720 (27%), Positives = 333/720 (46%), Gaps = 112/720 (15%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAAS 292
LN++Q E A PLL++AG GSGK I I AMTFT AA
Sbjct: 7 LNNKQ-EEAMKYTQGPLLVLAGAGSGKTSVITRKIAYLVQQCRIPAHRITAMTFTNKAAR 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ ++ + +K L++STFH+F L L R + L + F +I++A
Sbjct: 66 EMKERVSKLLSREESKGLSVSTFHTFGLNLLRLELKNLPLKANF----------SILDAD 115
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM- 411
KRI D++ D G L A +S +K D +
Sbjct: 116 D---------CKRILMDLMHRDNLSGAESKELI---AKAMKKISDWK--------NDLIV 155
Query: 412 -DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
+ A ++ +TP + + A + + Y LR+ NA+D+ DLI +LL EV
Sbjct: 156 PEQAHSTCETPEDVQ------FAHLYQLYERNLRAYNAVDFDDLIVMPTRLLQENAEVRD 209
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFR 529
++Q+ + ++VDE+QDT+ QY L+++L + T VGDDDQSI+++ GA +
Sbjct: 210 KWQNRVRYLLVDEYQDTNTAQYILVKLLVGVMGQFTAVGDDDQSIYAWRGAKPENMALLK 269
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
+DF N I+L +NYRST I++AA+ +IQ+N K + +D HG I I C N+D
Sbjct: 270 QDFPNLHIIKLEQNYRSTSRILKAANCVIQNNPHIFD-KKLWSDKGHGEVIRIITCRNDD 328
Query: 590 AQCAFIIDKILEHA-SNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAF 647
+ ++ +L H NG ++ A+LYR +V +T R+ +IP+ + G +F
Sbjct: 329 DEAERVVKDLLTHKLMNGK----NWKDYAVLYRGNFQARVLETQLRQMQIPYKLSGGTSF 384
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI-----DHIDKISTIRK 702
+ + ++ +++ LR + DD + R+ KR I + + S
Sbjct: 385 FARAEIKDVMSYLRLIINPEDDSAFLRIINT--------PKRAIGPVTLEKLGLFSQENN 436
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ D + + +QL + + T +L+ + + V +
Sbjct: 437 LSLLGASADQRLSMVLPKKAETQLHEFADFIATF--TRELLEDDEPVPKVRQMMNEAGYM 494
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
Y+ EQ A + KL N +N S+ Q L+ D D+K
Sbjct: 495 DYVREQSATPAQEKSKLDNIENLFNSI-QNLINRAEDV----------------DEKNIE 537
Query: 823 NVLKAFI--DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
+V++ + D + +++ E ++ + V L T+H +KGLE+ V++ E +P
Sbjct: 538 SVIRKLVLLDLLEQQQEE-------EDTDKVNLLTLHAAKGLEFPYVYIMGLEEELLP-- 588
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDAN---WQLLQPSRFLKEIPH 937
H+ + A ++EEERRL+YV +TRAR+ L + N + + PSRFL E+P
Sbjct: 589 HKNSIA----AETIEEERRLMYVGITRARQGLTLTLAEQRKNGGQMRQMTPSRFLDELPQ 644
>gi|375264069|ref|YP_005021512.1| ATP-dependent DNA helicase Rep [Vibrio sp. EJY3]
gi|369839394|gb|AEX20538.1| ATP-dependent DNA helicase Rep [Vibrio sp. EJY3]
Length = 671
Score = 221 bits (562), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 200/734 (27%), Positives = 349/734 (47%), Gaps = 97/734 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPSQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G +GKA +K L +STFH+ L + + ++L + F ++
Sbjct: 62 EMKERVGQTLGKAESKGLMVSTFHTLGLNIIKREYKQLGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R L S+S++K N
Sbjct: 110 ---DQDQLALLKELTEKQL--DGDKDLLR--------QLMSSISNWK----NDMLTPEQV 152
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
A+A G+ F A + Y +++ NALD+ DLI V LL T +V Q +
Sbjct: 153 KAQAKGEQQQLF--------AFCFDMYQKQMKAYNALDFDDLILMPVLLLRTNEDVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQ-ILASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q + ++VDE+QDT+ QY L++ I+ R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QSRIRYLLVDEYQDTNTSQYELVKHIVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
+ N + I+L +NYRST I+ AA+ LI +N + K + ++ G K+ + NE+ +
Sbjct: 265 YPNLRLIKLEQNYRSTSRILRAANILIANNPHVYE-KTLFSEIPDGEKLKVLLAKNEEHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +++ H + Y +ILYR ++ + + + ++P+ I G +F+ +
Sbjct: 324 AERVTGELIAHKF---LNRTEYRDYSILYRGNHQSRLIEKSLMQNRVPYKISGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ +E ++ + + +R S A+
Sbjct: 381 SEIKDIMAYLRVLVNPDDDNAFLRIVNT---PRREIGPVTLEKLGSYANMRGKSLFEAS- 436
Query: 711 DIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRA 770
F + L R+ L I+ R +++AV + V ++ + +L E A
Sbjct: 437 --FEMGLEQHLTGRGLENLRRFTQWLVAIADQAERGDTVAAVRSLVRDINYEDWLYETSA 494
Query: 771 VVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAFI 829
+ + +V+D S + A EG N DQ++K LK +
Sbjct: 495 SP---------------KAAEMRMKNVSDLYS--WIVADLEGDNYDQEEK----TLKEVV 533
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
++ R+ R + ++ ++V L T+H SKGLE+ V++ + E +P H+ +++E
Sbjct: 534 QRLTLRDMME-RGEEDEDSDAVQLMTLHASKGLEFPYVYLIGSEEGILP--HQ--TSIDE 588
Query: 890 KGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAEQ 946
+VEEERRL+YV +TRA+++L F + +L++P SRFL E+P E + +
Sbjct: 589 --DNVEEERRLMYVGITRAQRELTFTMCKERRQYGELIKPTQSRFLDELPFDDVEWEVNK 646
Query: 947 SVQDQHENIPEGTA 960
Q E + +G A
Sbjct: 647 KPVSQEERMAKGQA 660
>gi|445446432|ref|ZP_21443310.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii WC-A-92]
gi|444760243|gb|ELW84697.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii WC-A-92]
Length = 679
Score = 221 bits (562), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 202/724 (27%), Positives = 337/724 (46%), Gaps = 120/724 (16%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAAS 292
LN++Q E A PLL++AG GSGK I I AMTFT AA
Sbjct: 7 LNNKQ-EEAMKYTQGPLLVLAGAGSGKTSVITRKIAYLVQHCRIPAHRITAMTFTNKAAR 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ ++ + AK L++STFH+F L L R + L + F +I++A
Sbjct: 66 EMKERVTKLLSREEAKGLSVSTFHTFGLNLLRLELKNLPLKANF----------SILDAD 115
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM- 411
KRI D++ D G L A +S +K D +
Sbjct: 116 D---------CKRILMDLMHRDNLSGAESKELI---AKAMKKISDWK--------NDLIL 155
Query: 412 -DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
+ A ++ +TP + + A + + Y LR+ NA+D+ DLI +LL EV
Sbjct: 156 PEQAHSTCETPEDVQ------FAHLYQLYERNLRAYNAVDFDDLIVMPTRLLQENAEVRD 209
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFR 529
++Q+ + ++VDE+QDT+ QY L+++L + T VGDDDQSI+++ GA +
Sbjct: 210 KWQNRVRYLLVDEYQDTNTAQYILVKLLVGVMGQFTAVGDDDQSIYAWRGAKPENMALLK 269
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
+DF N I+L +NYRST I++AA+ +IQ+N K + +D HG I I C N+D
Sbjct: 270 QDFPNLHIIKLEQNYRSTSRILKAANCVIQNNPHIFD-KKLWSDKGHGEVIRIITCRNDD 328
Query: 590 AQCAFIIDKILEHA-SNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAF 647
+ ++ +L H NG ++ A+LYR +V +T R+ +IP+ + G +F
Sbjct: 329 DEAERVVKDLLTHKLMNGK----NWKDYAVLYRGNFQARVLETQLRQMQIPYKLSGGTSF 384
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI--DKISTIRK--- 702
+ + ++ +++ LR + DD + R+ KR I + +K+ +
Sbjct: 385 FARAEIKDVMSYLRLIINPEDDSAFLRIINT--------PKRAIGPVTLEKLGLFAQENN 436
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ D ++S + TQ + + IS R + V M+ +
Sbjct: 437 LSLLGASSD---QRLSMVLPKKAETQLHEF---ADFISTFTRELLEDDEPVPKVRQMMNE 490
Query: 763 K----YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
Y+ EQ A + KL N +N L S +Q L+ + D+
Sbjct: 491 AGYIDYIREQSATPAQEKSKLDNIEN-LFSSIQNLINRAEEV----------------DE 533
Query: 819 KGCINVLKAFI--DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
K +V++ + D + +++ E ++ + V L T+H +KGLE+ V++ E
Sbjct: 534 KNIESVIRKLVLLDMLEQQQEE-------EDTDKVNLLTLHAAKGLEFPYVYIMGLEEEL 586
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDAN---WQLLQPSRFLK 933
+P H+ + A ++EEERRL+YV +TRAR+ L + N + + PSRFL
Sbjct: 587 LP--HKNSIA----AETIEEERRLMYVGITRARQGLTLTLAEQRKNGGQMKQMTPSRFLD 640
Query: 934 EIPH 937
E+P
Sbjct: 641 ELPQ 644
>gi|387788260|ref|YP_006253328.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae ST556]
gi|418164362|ref|ZP_12801034.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA17371]
gi|418171296|ref|ZP_12807922.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA19451]
gi|418195326|ref|ZP_12831806.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47688]
gi|418197913|ref|ZP_12834375.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47778]
gi|353831639|gb|EHE11764.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA17371]
gi|353836028|gb|EHE16117.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA19451]
gi|353861853|gb|EHE41786.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47688]
gi|353863653|gb|EHE43575.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA47778]
gi|379138002|gb|AFC94793.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae ST556]
Length = 756
Score = 221 bits (562), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 213/728 (29%), Positives = 334/728 (45%), Gaps = 119/728 (16%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAAS 292
+ND+Q EA PLLI+AG GSGK ++P NILA+TFT AA
Sbjct: 1 MNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAR 59
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 60 EMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT------ 111
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
++KRI L D R L + S + L D
Sbjct: 112 ---------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID---------D 146
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
VA A A+ + +I A Y LR ++D+ DLI +++L P+V Y
Sbjct: 147 VAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVLTYY 201
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F KD
Sbjct: 202 QQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDFEKD 261
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ +E +
Sbjct: 262 YPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRADDELDE 320
Query: 592 CAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFY 648
F+ I L + N + A+LYR + + A + IP+ + G FY
Sbjct: 321 AVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKFY 375
Query: 649 RKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRKC 703
+K +R IIA L D+ + R+ E KR ++ I + ++
Sbjct: 376 SRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGLGTVEKIRDFANLQNM 427
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
S + A+ +I + I G +S +L E + L SI+ ++ SV
Sbjct: 428 SMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITELVESV------- 475
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
LE+ VD +LN L S + + ++ +FLS + +V +++ G ++
Sbjct: 476 --LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTTDVTEEETG-LD 524
Query: 824 VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 525 KLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGMEENVFPLSR-- 579
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEIP 936
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+ EI
Sbjct: 580 ---ATEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFINEIS 632
Query: 937 HHLREVQA 944
L E Q
Sbjct: 633 SDLLEYQG 640
>gi|388602728|ref|ZP_10161124.1| ATP-dependent DNA helicase Rep [Vibrio campbellii DS40M4]
Length = 671
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 197/737 (26%), Positives = 349/737 (47%), Gaps = 97/737 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G +GKA +K L +STFH+ L + + + L + F ++
Sbjct: 62 EMKERVGQTLGKAESKGLMVSTFHTLGLNIIKREYKHLGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L +D +R L +S++K D +
Sbjct: 110 ---DQDQLALLKELTEKQLDSDKDL--LR--------QLLSCISNWK--------NDMLT 148
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
+A E ++ A E Y +++ NALD+ DLIS V+LL EV Q +
Sbjct: 149 PEQAKALAQGE----QQQLFAFCFEMYQKQMKAYNALDFDDLISLPVQLLRNNEEVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQ-ILASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L++ I+ R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QNRIRYLLVDEYQDTNTSQYDLVKLIVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
+ N + I+L +NYRST I+ AA+ LI +N + K++ ++ G K+ + NE+ +
Sbjct: 265 YPNLRLIKLEQNYRSTSRILRAANILIANNPHVYE-KSLFSEIPDGEKLKVLLAKNEEHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +++ H + Y AILYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AERVTGELIAHKF---LNRTEYKDYAILYRGNHQSRLIEKSLMQNRVPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ +E ++ + + +R S +
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PRREIGPVTLEKLGSYANMRGKSLFEVS- 436
Query: 711 DIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRA 770
F + L R+ L I+ R ++ AV + V ++ + +L E A
Sbjct: 437 --FEMGLEQHLSGRGLENLRRFTQWLVAIADQAERGDTVEAVRSLVRDIHYEDWLYETSA 494
Query: 771 VVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAFI 829
+ + +V+D S + A EG N DQ++K LK +
Sbjct: 495 SP---------------KAAEMRMKNVSDLYS--WIVADLEGDNYDQEEK----TLKEVV 533
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
++ R+ R + ++ ++V L T+H SKGLE+ V++ + E +P H+ +++E
Sbjct: 534 QRLTLRDMME-RGEEDEDSDAVQLMTLHASKGLEFPFVYLIGSEEGILP--HQ--TSIDE 588
Query: 890 KGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAEQ 946
+VEEERRL+YV +TRA+++L F + +L++P SRFL E+P E +A +
Sbjct: 589 --DNVEEERRLMYVGITRAQRELTFTMCKERRQFGELIKPTQSRFLDELPFDDVEWEANK 646
Query: 947 SVQDQHENIPEGTAQFT 963
E + +G A
Sbjct: 647 KPVSAEERMAKGQAHIA 663
>gi|254829488|ref|ZP_05234175.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL N3-165]
gi|284802203|ref|YP_003414068.1| ATP-dependent DNA helicase [Listeria monocytogenes 08-5578]
gi|284995345|ref|YP_003417113.1| ATP-dependent DNA helicase [Listeria monocytogenes 08-5923]
gi|404413837|ref|YP_006699424.1| ATP-dependent DNA helicase [Listeria monocytogenes SLCC7179]
gi|258601903|gb|EEW15228.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL N3-165]
gi|284057765|gb|ADB68706.1| ATP-dependent DNA helicase [Listeria monocytogenes 08-5578]
gi|284060812|gb|ADB71751.1| ATP-dependent DNA helicase [Listeria monocytogenes 08-5923]
gi|404239536|emb|CBY60937.1| ATP-dependent DNA helicase [Listeria monocytogenes SLCC7179]
Length = 733
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 211/739 (28%), Positives = 334/739 (45%), Gaps = 127/739 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q A PLLI+AG GSGK G++P NILA+TFT
Sbjct: 9 VDGLNPEQ-RRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTNK 67
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ RIG+++G A+ + ISTFHS +++ R +++ F I G + ++I
Sbjct: 68 AAREMKSRIGNLMG-GEAESIWISTFHSMCVRILRRDIDRIGYERNFTIL-DGSDQLSVI 125
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ IL K + G + S+S+ K N+
Sbjct: 126 KG--------ILKEKNVDPKKFEPRG---------------ILASISNAK----NELITA 158
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ +ASG D++ + E Y L+ ALD+ DLI +++L P+V
Sbjct: 159 SEYIKEASG--------FYDKMVGEVYEKYEKKLKKNQALDFDDLIMVTIQLFERVPDVL 210
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ ++ I VDE+QDT+ QY L++ LAS + +VGD DQSI+ + GADIS SF
Sbjct: 211 EYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRFKNLCVVGDSDQSIYGWRGADISNIMSF 270
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K I L NYRST+ I+EAA+ +I++N R + KN+ T N+ G KI + E
Sbjct: 271 EKDYPNAKTILLEENYRSTKRILEAANRVIENNGNR-KPKNLWTSNAEGKKIFYHKALTE 329
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ A+++ KI E +N + + AILYR +V + F + + + + G F
Sbjct: 330 KEEAAYVVMKIQEEVNNSNRPLSDF---AILYRTNAQSRVMEEYFMKSNMAYTMVGGTKF 386
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y +K ++ I+A LR DD R+ + ++ +D ++ ++T S
Sbjct: 387 YDRKEIKDILAYLRLISNNEDDISLTRIVN---VPKRGVGPGTLDKLNNVATTYDLSLFE 443
Query: 708 AACDIFGAKISGTFKRS---------QLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
I A IS + TQ + L E++ +++ + T
Sbjct: 444 VLNRIELAGISPKISKDLVAFHDLIRGFTQMQDFLSVTELVEEILEK--------TGYRA 495
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
M+ + +E Q L ++ +FLS KE + DK
Sbjct: 496 MLKNERTIEA----------------------QTRLENIDEFLSVTQNFEKE----NDDK 529
Query: 819 KGCINVLKAFI-DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
L AF+ D + + + +VTL T+H +KGLE+ +VF+ E
Sbjct: 530 -----TLVAFLTDLALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIF 584
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQPSR 930
P + + +EEERRL YV +TRA ++LF+ LY +N Q SR
Sbjct: 585 P-----HSRAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRMLYGRPSSN----QESR 635
Query: 931 FLKEIPHHLREVQAEQSVQ 949
F+ EIP L E+ E ++
Sbjct: 636 FIGEIPRDLLELGNESKLK 654
>gi|418148512|ref|ZP_12785277.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA13856]
gi|353813187|gb|EHD93420.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA13856]
Length = 756
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 213/728 (29%), Positives = 334/728 (45%), Gaps = 119/728 (16%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAAS 292
+ND+Q EA PLLI+AG GSGK ++P NILA+TFT AA
Sbjct: 1 MNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAR 59
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 60 EMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT------ 111
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
++KRI L D R L + S + L D
Sbjct: 112 ---------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID---------D 146
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
VA A A+ + +I A Y LR ++D+ DLI +++L P+V Y
Sbjct: 147 VAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVLTYY 201
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F KD
Sbjct: 202 QQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDFEKD 261
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ +E +
Sbjct: 262 YPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRADDELDE 320
Query: 592 CAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFY 648
F+ I L + N + A+LYR + + A + IP+ + G FY
Sbjct: 321 AVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKFY 375
Query: 649 RKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRKC 703
+K +R IIA L D+ + R+ E KR ++ I + ++
Sbjct: 376 SRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGLGTVEKIRDFANLQNM 427
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
S + A+ +I + I G +S +L E + L SI+ ++ SV
Sbjct: 428 SMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITELVESV------- 475
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
LE+ VD +LN L S + + ++ +FLS + +V +++ G ++
Sbjct: 476 --LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTTDVTEEETG-LD 524
Query: 824 VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 525 KLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGMEENVFPLSR-- 579
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEIP 936
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+ EI
Sbjct: 580 ---ATEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFINEIS 632
Query: 937 HHLREVQA 944
L E Q
Sbjct: 633 SDLLEYQG 640
>gi|153835500|ref|ZP_01988167.1| ATP-dependent DNA helicase Rep [Vibrio harveyi HY01]
gi|148867939|gb|EDL67147.1| ATP-dependent DNA helicase Rep [Vibrio harveyi HY01]
Length = 671
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 200/734 (27%), Positives = 348/734 (47%), Gaps = 97/734 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKFVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G +GKA +K L +STFH+ L + + + L + F ++
Sbjct: 62 EMKERVGQTLGKAESKGLMVSTFHTLGLNIIKREYKHLGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R L +S++K N
Sbjct: 110 ---DQDQLALLKELTEKQL--DGDKDLLR--------QLLSCISNWK----NDMLTSEQA 152
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
A A G+ F A E Y +++ NALD+ DLIS V+LL EV Q +
Sbjct: 153 KALAQGEQQQLF--------AFCFEMYQKQMKAYNALDFDDLISLPVQLLRNNEEVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQ-ILASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L++ I+ R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QNRIRYLLVDEYQDTNTSQYDLVKLIVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
+ N + I+L +NYRST I+ AA+ LI +N + K++ ++ G K+ + NE+ +
Sbjct: 265 YPNLRLIKLEQNYRSTSRILRAANILIANNPHVYE-KSLFSEIPDGEKLKVLLAKNEEHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +++ H + Y AILYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AERVTGELIAHKF---LNRTEYKDYAILYRGNHQSRLIEKSLMQNRVPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ +E ++ + + +R S +
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PRREIGPVTLEKLGSYANMRGKSLFEVS- 436
Query: 711 DIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRA 770
F + L R+ L I+ R ++ AV + V ++ + +L E A
Sbjct: 437 --FEMGLEQHLTGRGLENLRRFTQWLVAIADQAERGDTVEAVRSLVRDIHYEDWLYETSA 494
Query: 771 VVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAFI 829
+ + +V+D S + A EG N DQ++K LK +
Sbjct: 495 SP---------------KAAEMRMKNVSDLYS--WIVADLEGDNYDQEEK----TLKEVV 533
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
++ R+ R + ++ ++V L T+H SKGLE+ V++ + E +P H+ +++E
Sbjct: 534 QRLTLRDMME-RGEEDEDSDAVQLMTLHASKGLEFPFVYLIGSEEGILP--HQ--TSIDE 588
Query: 890 KGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAEQ 946
+VEEERRL+YV +TRA+++L F + +L++P SRFL E+P E +A +
Sbjct: 589 --DNVEEERRLMYVGITRAQRELTFTMCKERRQFGELIKPTQSRFLDELPFDDVEWEANK 646
Query: 947 SVQDQHENIPEGTA 960
E + +G A
Sbjct: 647 KPVSAEERMAKGQA 660
>gi|149372162|ref|ZP_01891432.1| ATP-dependent DNA helicase II [unidentified eubacterium SCB49]
gi|149354929|gb|EDM43491.1| ATP-dependent DNA helicase II [unidentified eubacterium SCB49]
Length = 780
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 151/449 (33%), Positives = 235/449 (52%), Gaps = 51/449 (11%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTT 288
+YL LN+ QL A ++++AG GSGK G+ P NILA+TFT
Sbjct: 11 QYLDQLNEAQL-APTIQKDGAMIVIAGAGSGKTRVLTFRIAYLMSQGVDPFNILALTFTN 69
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA EM+ RI +IVG + K L + TFHS ++ R A+KL F IY Q +++
Sbjct: 70 KAAREMKSRITTIVGASEGKNLWMGTFHSIFAKILRFEADKLGYPGNFTIY-DTQDSQSV 128
Query: 349 IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
I AV +K + D Y R S + N+++ ++ ++ F
Sbjct: 129 IRAV----------IKEMQLDKDIYKYKQVYSRISSYK-NSLV--TVKAY-------FNN 168
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
+ A A K P ++GD I + Y A+D+ DL+ + +LL+ FP+V
Sbjct: 169 PELMEADAMAKMP----RLGD-----IYQRYVDKCFKAGAMDFDDLLLKTNELLTRFPQV 219
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDS 527
+YQD ++ I+VDE+QDT+ QY +++ L+ I +VGDD QSI++F GA+I+ +
Sbjct: 220 LAKYQDRFRYILVDEYQDTNHSQYLIVKALSDRFQNICVVGDDAQSIYAFRGANINNILN 279
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F+KD+ N K RL +NYRST+ IV AA+S+I+ N R K V T N G+KI +
Sbjct: 280 FQKDYDNVKTFRLEQNYRSTKNIVNAANSIIEKNKTRLD-KVVWTANDDGAKIRVNRTMT 338
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVA 646
+ + F+ I E+A N + AILYR + + A R++ IP+ I+ G++
Sbjct: 339 DGDEGRFVASDIFENAMN---EQLPFDKFAILYRTNAQSRAMEDALRKKDIPYRIYGGLS 395
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRV 675
FY++K ++ +IA LR L D+ +RV
Sbjct: 396 FYQRKEIKDVIAYLRLVLNPKDEEALKRV 424
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 847 NENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMT 906
++N V L T+H +KGLE+ V++ E P +G + +EEERRL YVA+T
Sbjct: 567 DDNKVALMTVHLAKGLEFPYVYIVGMEEELFP-----SGMSMNTRSELEEERRLFYVAVT 621
Query: 907 RARKKLFILYVMMDANWQLL---QPSRFLKEIPHHLRE 941
RA K+ + Y W L +PSRF+ EI E
Sbjct: 622 RAEKQATLTYTQSRYRWGKLIDAEPSRFITEIDESFLE 659
>gi|424041566|ref|ZP_17779468.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HENC-02]
gi|408890586|gb|EKM28660.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HENC-02]
Length = 671
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 200/737 (27%), Positives = 348/737 (47%), Gaps = 97/737 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G +GKA +K L +STFH+ L + + + L + F ++
Sbjct: 62 EMKERVGQTLGKAESKGLMVSTFHTLGLNIIKREYKHLGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R L +S++K N
Sbjct: 110 ---DQDQLALLKELTEKQL--DGDKDLLR--------QLLSCISNWK----NDMLTPEQA 152
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
A A G+ F A E Y +++ NALD+ DLIS V+LL EV Q +
Sbjct: 153 KALAQGEQQQLF--------AFCFEMYQKQMKAYNALDFDDLISLPVQLLRNNEEVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQ-ILASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L++ I+ R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QNRIRYLLVDEYQDTNTSQYDLVKLIVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
+ N + I+L +NYRST I+ AA+ LI +N + K++ ++ G K+ + NE+ +
Sbjct: 265 YPNLRLIKLEQNYRSTSRILRAANILIANNPHVYE-KSLFSEIPDGEKLKVLLAKNEEHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +++ H + Y AILYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AERVTGELIAHKF---LNRTEYKDYAILYRGNHQSRLIEKSLMQNRVPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ +E ++ + + +R S +
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PRREIGPVTLEKLGSYANMRGKSLFEVS- 436
Query: 711 DIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRA 770
F + L R+ L I+ R ++ AV + V ++ + +L E A
Sbjct: 437 --FEMGLEQHLTGRGLENLRRFTQWLVAIADQAERGDTVEAVRSLVRDIHYEDWLYETSA 494
Query: 771 VVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAFI 829
+ + +V+D S + A EG N DQ++K LK +
Sbjct: 495 SP---------------KAAEMRMKNVSDLYS--WIVADLEGDNYDQEEK----TLKEVV 533
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
++ R+ R + ++ ++V L T+H SKGLE+ V++ + E +P H+ +++E
Sbjct: 534 QRLTLRDMME-RGEEDEDSDAVQLMTLHASKGLEFPFVYLIGSEEGILP--HQ--TSIDE 588
Query: 890 KGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAEQ 946
+VEEERRL+YV +TRA+++L F + +L++P SRFL E+P E +A +
Sbjct: 589 --DNVEEERRLMYVGITRAQRELTFTMCKERRQFGELIKPTQSRFLDELPFDDVEWEANK 646
Query: 947 SVQDQHENIPEGTAQFT 963
E + +G A
Sbjct: 647 KPVSAEERMAKGQAHIA 663
>gi|169634040|ref|YP_001707776.1| ATP-dependent DNA helicase [Acinetobacter baumannii SDF]
gi|169152832|emb|CAP01861.1| ATP-dependent DNA helicase [Acinetobacter baumannii]
Length = 679
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 202/724 (27%), Positives = 337/724 (46%), Gaps = 120/724 (16%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAAS 292
LN++Q E A PLL++AG GSGK I I AMTFT AA
Sbjct: 7 LNNKQ-EEAMKYTQGPLLVLAGAGSGKTSVITRKIAYLVQHCRIPAHRITAMTFTNKAAR 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ ++ + AK L++STFH+F L L R + L + F +I++A
Sbjct: 66 EMKERVTKLLSREEAKGLSVSTFHTFGLNLLRLELKNLPLKANF----------SILDAD 115
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM- 411
KRI D++ + G L A +S +K D +
Sbjct: 116 D---------CKRILMDLMHRNNLSGAESKELI---AKAMKKISDWK--------NDLIL 155
Query: 412 -DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
+ A ++ +TP + + A + + Y LR+ NA+D+ DLI +LL EV
Sbjct: 156 PEQAHSTCETPEDVQ------FAHLYQLYERNLRAYNAVDFDDLIVMPTRLLQENAEVRD 209
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFR 529
++Q+ + ++VDE+QDT+ QY L+++L + T VGDDDQSI+++ GA +
Sbjct: 210 KWQNRVRYLLVDEYQDTNTAQYILVKLLVGVMGQFTAVGDDDQSIYAWRGAKPENMALLK 269
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
+DF N I+L +NYRST I++AA+ +IQ+N K + +D HG I I C N+D
Sbjct: 270 QDFPNLHIIKLEQNYRSTSRILKAANCVIQNNPHIFD-KKLWSDKGHGEVIRIITCRNDD 328
Query: 590 AQCAFIIDKILEHA-SNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAF 647
+ ++ +L H NG ++ A+LYR +V +T R+ +IP+ + G +F
Sbjct: 329 DEAERVVKDLLTHKLMNGK----NWKDYAVLYRGNFQARVLETQLRQMQIPYKLSGGTSF 384
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI--DKISTIRK--- 702
+ + ++ +++ LR + DD + R+ KR I + +K+ +
Sbjct: 385 FARAEIKDVMSYLRLIINPEDDSAFLRIINM--------PKRAIGPVTLEKLGLFAQENN 436
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ D ++S + TQ + + IS R + V M+ +
Sbjct: 437 LSLLGASSD---QRLSMVLPKKAETQLHEF---ADFISTFTRELLEDDEPVPKVRQMMNE 490
Query: 763 K----YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
Y+ EQ A + KL N +N L S +Q L+ D D+
Sbjct: 491 AGYIDYIREQSATPAQEKSKLDNIEN-LFSSIQNLINRAEDV----------------DE 533
Query: 819 KGCINVLKAFI--DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
K +V++ + D + +++ E ++ + V L T+H +KGLE+ V++ E
Sbjct: 534 KNIESVIRKLVLLDMLEQQQEE-------EDTDKVNLLTLHAAKGLEFPYVYIMGLEEEL 586
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDAN---WQLLQPSRFLK 933
+P H+ + A ++EEERRL+YV +TRAR+ L + N + + PSRFL
Sbjct: 587 LP--HKNSIA----AETIEEERRLMYVGITRARQGLTLTLAEQRKNGGQMKQMTPSRFLD 640
Query: 934 EIPH 937
E+P
Sbjct: 641 ELPQ 644
>gi|334339878|ref|YP_004544858.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum ruminis DSM 2154]
gi|334091232|gb|AEG59572.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum ruminis DSM 2154]
Length = 719
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 207/721 (28%), Positives = 351/721 (48%), Gaps = 113/721 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
L +LN Q EA PLL++AG GSGK G+ P NILA+TFT A
Sbjct: 4 LANLNPAQAEA-VKHTEGPLLVLAGAGSGKTRVLTCRVARILQQGVPPYNILAITFTNKA 62
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIE 350
A+EMR+R+ +V +A A+ L ++TFHS L++ R + L S F IY Q+ I E
Sbjct: 63 AAEMRNRVEQLVPEA-ARNLWVTTFHSACLRILRREIKALGYDSNFSIYDDADQQTVIKE 121
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
++ LE I G M++A+ S + KL N++ER
Sbjct: 122 CLKELE---------IDEKRFQPRG----------MLSAI---SGAKNKLLDPNQYERQA 159
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
+ +++ A + Y L NA+D+ DL+ +V+L P V
Sbjct: 160 YEYF--------------EQVVARVYRLYQEKLFKNNAVDFDDLLVLTVRLFREHPHVLG 205
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFR 529
YQ +K I+VDE+QDT+ QY L+ +LA H + +VGD +QSI+ + GADI+ SF
Sbjct: 206 YYQTRFKYILVDEYQDTNHTQYVLVNMLAERHRNLCVVGDPNQSIYKWRGADINNILSFE 265
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
+D+ ++L +NYRST I+EAA+++I++N++ +++ + T G++I + +E
Sbjct: 266 RDYPEAMVVKLEQNYRSTGNILEAANAVIKNNLEAKEMQ-LWTAKGAGTRIQVFRAESER 324
Query: 590 AQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFY 648
+ +I D++ E +G Y +A+LYR +VF+ F IP+ I G FY
Sbjct: 325 FEAHYIADRVKELRLSGDR---KYREMAVLYRTHAQSRVFEEVFLRLGIPYTIFGGQKFY 381
Query: 649 RKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTI---RKC 703
+K ++ +++ LR + D R+ KR I ++KI+ R
Sbjct: 382 ERKEIKDLLSYLRVIVNPVDGQSLSRIINV--------PKRGIGASSLEKITVYAAERDL 433
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
S ++A +I G +++ ++ L E++S+ ++ A SV MV
Sbjct: 434 SLLAALDQ--AEEIPGLPGKAR----KQCALLAELLSQFRQQ-----AQFLSVTEMV--- 479
Query: 764 YLLEQRAVVDFDGGKL-LNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
R V+D G K L ++ + S + L ++ +F+S +++G +++G +
Sbjct: 480 -----REVLDKTGYKAELEAEDTVESRTR--LENLQEFMSVTQEYDRQQG----EEEGGL 528
Query: 823 NVLKAFIDYISERETEHFRTQRHDNE-NSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
+ I +++ + RHD + + + L T+H +KGLE+ +VF+ E P
Sbjct: 529 EDFLSTISLVTDMD-------RHDPQSDQLVLMTLHSAKGLEYPVVFLTGMEEGVFP--- 578
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM---MDANWQLLQPSRFLKEIPHH 938
+ A+ ++ +EEERRL YV +TRA ++L++ + + L SRFL+EIP
Sbjct: 579 -HSRALYDQ-EELEEERRLAYVGITRAEEQLYLTHCWERTLFGRTNLNPKSRFLEEIPVE 636
Query: 939 L 939
L
Sbjct: 637 L 637
>gi|300766625|ref|ZP_07076542.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|448820696|ref|YP_007413858.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum ZJ316]
gi|300495725|gb|EFK30876.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|448274193|gb|AGE38712.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum ZJ316]
Length = 759
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 203/726 (27%), Positives = 332/726 (45%), Gaps = 116/726 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +ND+Q EA D PLLI+AG GSGK G++P N+LA+TFT
Sbjct: 11 LAGMNDKQQEAVL-DTEGPLLIMAGAGSGKTRVLTHRVAYLIEEQGVNPWNVLAITFTNK 69
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+G ++G+ +A+E+ +STFH+ +++ R E++ F I G +QR
Sbjct: 70 AAREMRERVGKLLGE-SAQEVWVSTFHALCVRILRRDIEQIGYNRAFTIAGTSEQR---- 124
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+VKRI T+ +++ F S K +
Sbjct: 125 -----------TLVKRILTEQ---------------NIDSKKFDPRSILSAISNAKNDLQ 158
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
++ K S +P E + A + Y L + A+D+ DLI +++L PE
Sbjct: 159 TPEMYKESAASPFE------SVVADVYLQYQRELAADQAVDFDDLIMLTIQLFKQNPETL 212
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSF 528
YQ+ + I VDE+QDT+ QY+L+ +LA + + +VGD DQSI+ + GA++ F
Sbjct: 213 AWYQNKFHYIHVDEYQDTNNAQYTLVNLLADKYKNLCVVGDADQSIYGWRGANMENILDF 272
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + L +NYRST+ I+ AA+++I +N R + K + T+N G KI +E
Sbjct: 273 EKDYPQADTVMLEQNYRSTKTILSAANAVINNNSTR-RPKKLWTENEPGDKISYYRGQSE 331
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+I KI E YG AILYR +V + + + IP+ + G F
Sbjct: 332 SDETHFVIAKIQESMQQDK---MDYGDFAILYRTNAQSRVMEESLVKANIPYTMVGGNKF 388
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVF---KAFLLLEKEEKKRVI------DHIDKIS 698
Y +K +R +++ L + D + RV K + EK R+ ++ S
Sbjct: 389 YDRKEIRDVLSYLTLAVNDQDSMNFERVVNEPKRGIGQTSVEKLRLFADEAGYSMLEAAS 448
Query: 699 TIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
+ + ISA AK + T ++L R+ L ++ +++ R + A+ + A
Sbjct: 449 NVDMANGISARAKGALAKFAATM--NELRAMREYLSVTDLTQEILDRTGYMKALKDAKAT 506
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST--KFTAAKEEGNVDQ 816
LE +A ++ ++ +FLS +F + + + D
Sbjct: 507 KS-----LEAQARIE----------------------NIEEFLSVTKQFDDSYQPEDEDS 539
Query: 817 DKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
DK F+D++++ + +VTL T+H +KGLE+ +VF+ E
Sbjct: 540 DK---------FVDFLADLALVSDVDNVEEEPQAVTLMTLHAAKGLEFPVVFLIGMEEGI 590
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLK 933
PL +EEERRL YV +TRA KKL++ M+ Q SRF++
Sbjct: 591 FPLSR-----AMMDEDELEEERRLAYVGITRAEKKLYLTNAYSRMLYGRRQNNPASRFVE 645
Query: 934 EIPHHL 939
EI L
Sbjct: 646 EIEPEL 651
>gi|350529842|ref|ZP_08908783.1| ATP-dependent DNA helicase Rep [Vibrio rotiferianus DAT722]
Length = 671
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 200/737 (27%), Positives = 348/737 (47%), Gaps = 97/737 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G +GKA +K L +STFH+ L + + + L + F ++
Sbjct: 62 EMKERVGQTLGKAESKGLMVSTFHTLGLNIIKREYKHLGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R L +S++K N
Sbjct: 110 ---DQDQLALLKELTEKQL--DGDKDLLR--------QLLSCISNWK----NDMLTPEQA 152
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
A A G+ F A E Y +++ NALD+ DLIS V+LL EV Q +
Sbjct: 153 KALAQGEQQQLF--------AFCFEMYQKQMKAYNALDFDDLISLPVQLLRNNEEVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQ-ILASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L++ I+ R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QNRIRYLLVDEYQDTNTSQYDLVKLIVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
+ N + I+L +NYRST I+ AA+ LI +N + K++ ++ G K+ + NE+ +
Sbjct: 265 YPNLRLIKLEQNYRSTSRILRAANILIANNPHVYE-KSLFSEIPDGEKLKVLLAKNEEHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +++ H + Y AILYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AERVTGELIAHKF---LNRTDYKDYAILYRGNHQSRLIEKSLMQNRVPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ +E ++ + + +R S +
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PRREIGPVTLEKLGSYANMRGKSLFEVS- 436
Query: 711 DIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRA 770
F + L R+ L I+ R ++ AV + V ++ + +L E A
Sbjct: 437 --FEMGLEQHLTGRGLENLRRFTQWLVAIADQAERGDTVEAVRSLVRDIHYEDWLYETSA 494
Query: 771 VVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAFI 829
+ + +V+D S + A EG N DQ++K LK +
Sbjct: 495 SP---------------KAAEMRMKNVSDLYS--WIVADLEGDNYDQEEK----TLKEVV 533
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
++ R+ R + ++ ++V L T+H SKGLE+ V++ + E +P H+ +++E
Sbjct: 534 QRLTLRDMME-RGEEDEDSDAVQLMTLHASKGLEFPFVYLIGSEEGILP--HQ--TSIDE 588
Query: 890 KGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAEQ 946
+VEEERRL+YV +TRA+++L F + +L++P SRFL E+P E +A +
Sbjct: 589 --DNVEEERRLMYVGITRAQRELTFTMCKERRQFGELIKPTQSRFLDELPFDDVEWEANK 646
Query: 947 SVQDQHENIPEGTAQFT 963
E + +G A
Sbjct: 647 KPVSAEERMAKGQAHIA 663
>gi|402495614|ref|ZP_10842338.1| PcrA-like UvrD/Rep family ATP-dependent DNA helicase [Aquimarina
agarilytica ZC1]
Length = 774
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 152/450 (33%), Positives = 232/450 (51%), Gaps = 53/450 (11%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTT 288
+YL LN+ QL A L+++AG GSGK G+ P NIL++TFT
Sbjct: 3 EYLSQLNEAQL-APTIHTEGALMVIAGAGSGKTRVLTYRIAYLMHKGVDPFNILSLTFTN 61
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA EM++RI IVGK+ AK L + TFHS ++ R A+KL S F IY +R I
Sbjct: 62 KAAREMKERIAQIVGKSEAKNLWMGTFHSIFAKILRFEADKLGYPSNFTIYDSQDSQRLI 121
Query: 349 IEAVRLLENEK-ILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
++ + +K I K++ + + + + SL + A F
Sbjct: 122 SSIIKEMSLDKDIYKFKQVHSRISS-------FKNSLITVKAY---------------FN 159
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ A A K P +IG+ I ++Y A+D+ DL+ + +LL+ FPE
Sbjct: 160 NPDLMEADAMAKKP----RIGE-----IYQHYVDRCFKAGAMDFDDLLLRTNELLNRFPE 210
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFD 526
V +YQ+ +K I+VDE+QDT+ QY +++ LA I +VGDD QSI++F GA+I+
Sbjct: 211 VLAKYQNRFKYILVDEYQDTNHSQYLIVKALADRFQNICVVGDDAQSIYAFRGANINNIL 270
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
+F KD+ N K RL +NYRSTR IVEAA+S+I HN + K V T N G KII+
Sbjct: 271 NFEKDYDNVKTYRLEQNYRSTRNIVEAANSIIDHNKTKLD-KIVWTANDDGPKIIVNRLP 329
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GV 645
+ + ++ I E+ + AILYR + + A R+R I + I+ G+
Sbjct: 330 TDGDEGRYVASSIFENQMTEQRKASDF---AILYRTNAQSRAMEDALRKRGIKYRIYGGL 386
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRV 675
+FY++K ++ ++A LR D+ +RV
Sbjct: 387 SFYQRKEIKDVLAYLRLITNPKDEEALKRV 416
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 8/93 (8%)
Query: 846 DNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAM 905
D+E+ V L TIH +KGLE+ V++ E P +G + +EEERRL YVA+
Sbjct: 559 DDEDRVALMTIHLAKGLEFPYVYIVGMEEDLFP-----SGMSMNTRSELEEERRLFYVAL 613
Query: 906 TRARKKLFILYVMMDANWQLL---QPSRFLKEI 935
TRA K+ ++ Y + W L +PSRF++EI
Sbjct: 614 TRAEKQAYLTYTLSRYRWGKLIDAEPSRFIEEI 646
>gi|227543585|ref|ZP_03973634.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri CF48-3A]
gi|338202909|ref|YP_004649054.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri SD2112]
gi|227186425|gb|EEI66496.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri CF48-3A]
gi|336448149|gb|AEI56764.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri SD2112]
Length = 757
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 212/757 (28%), Positives = 347/757 (45%), Gaps = 134/757 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ +ND+Q EA PLL++AG GSGK G+ P NILA+TFT
Sbjct: 8 LEGMNDKQSEAVL-TTEGPLLVMAGAGSGKTRVLTHRVAYLIEENGVLPWNILAITFTNK 66
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G ++G+ +A E+ +STFH+ +++ R EK+ F I +QR
Sbjct: 67 AAREMKERVGKLLGE-SANEIWVSTFHALCVRILRRDIEKIGYNRAFTIADTSEQR---- 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI ++ F R+ L
Sbjct: 122 -----------TLMKRICAELNIDTKKFD-PRSIL------------------------S 145
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+ AK + TP ++ K + + + A + Y L + ALD+ DLI +++LL +
Sbjct: 146 AISNAKNALLTPDDYSKEANSMFENMVARAYKLYQQELETNQALDFDDLIMKTIELLESD 205
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISG 524
E + YQD + I VDE+QDT+ QY L+ +LA + + +VGD DQSI+ + GA+++
Sbjct: 206 QETLEFYQDKFHYIHVDEYQDTNDAQYRLVNLLAQKYQNLCVVGDADQSIYGWRGANMNN 265
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+F D+ K + L +NYRST+ I+ AA+ +I +N+ R + KN+ T+N G KI
Sbjct: 266 ILNFEHDYPQAKTVMLEQNYRSTQTILNAANEVIANNLYRKK-KNLWTENGQGDKISYYR 324
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
NE + FI+ KI E + AILYR ++ + F + IP+ +
Sbjct: 325 AQNEHDEAQFIVSKIKEEQEKHG---YHFNDFAILYRTNAQSRMVEETFLKSSIPYTMVG 381
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI-----DHIDKIS 698
G FY ++ +R I+A L + D + RV KR I +H+ +
Sbjct: 382 GHKFYDRREIRDILAYLTLIVNPADSMSFERVVNT--------PKRGIGLTSVEHLRNFA 433
Query: 699 TIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
+ + AA ++ A R+++ + +++ A +T A
Sbjct: 434 NENGWTLLKAAQNVDTASEITARTRNKIDEFGQLM-----------------ANLTKQAE 476
Query: 759 MVPQKYLLEQRAVVDFDG-GKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQD 817
+ L EQ +++ G K+L++D L + Q ++ +F S T +E + D D
Sbjct: 477 YLTLTDLTEQ--ILELSGYNKMLSDDRSLEA--QARRENLDEFKSV--TQEYDEQHKDDD 530
Query: 818 KKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
L+ I+++++ + + +VTL T+H +KGLE+ +VF+ E
Sbjct: 531 DPN----LQKIINFLADLALVSDQDDVDEQAPAVTLMTLHAAKGLEFPVVFLVGMEEGIF 586
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLF-------ILYVMMDANWQLLQPSR 930
PL + +EEERRL YV +TRA+KKL+ +LY + N QPSR
Sbjct: 587 PLSRAL-----MEDDELEEERRLAYVGITRAKKKLYLTNAFSRLLYGRIQRN----QPSR 637
Query: 931 FLKEIPHHLREVQAEQSVQDQHENIPEGTAQFTINLP 967
F++EI L Q EN P G + LP
Sbjct: 638 FVEEIDSELL----------QFENSPSGNSIKDSKLP 664
>gi|194466913|ref|ZP_03072900.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri 100-23]
gi|423334726|ref|ZP_17312504.1| ATP-dependent DNA helicase [Lactobacillus reuteri ATCC 53608]
gi|194453949|gb|EDX42846.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri 100-23]
gi|337728247|emb|CCC03342.1| ATP-dependent DNA helicase [Lactobacillus reuteri ATCC 53608]
Length = 757
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 212/757 (28%), Positives = 347/757 (45%), Gaps = 134/757 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ +ND+Q EA PLL++AG GSGK G+ P NILA+TFT
Sbjct: 8 LEGMNDKQSEAVL-TTEGPLLVMAGAGSGKTRVLTHRVAYLIEENGVLPWNILAITFTNK 66
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G ++G+ +A E+ +STFH+ +++ R EK+ F I +QR
Sbjct: 67 AAREMKERVGKLLGE-SANEIWVSTFHALCVRILRRDIEKIGYNRAFTIADTSEQR---- 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI ++ F R+ L
Sbjct: 122 -----------TLMKRICAELNIDTKKFD-PRSIL------------------------S 145
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+ AK + TP ++ K + + + A + Y L + ALD+ DLI +++LL +
Sbjct: 146 AISNAKNALLTPDDYSKEANSMFENMVARAYKLYQQELEANQALDFDDLIMKTIELLESD 205
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISG 524
E + YQD + I VDE+QDT+ QY L+ +LA + + +VGD DQSI+ + GA+++
Sbjct: 206 QETLEFYQDKFHYIHVDEYQDTNDAQYRLVNLLAQKYQNLCVVGDADQSIYGWRGANMNN 265
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+F D+ K + L +NYRST+ I+ AA+ +I +N+ R + KN+ T+N G KI
Sbjct: 266 ILNFEHDYPQAKTVMLEQNYRSTQTILNAANEVIANNLYRKK-KNLWTENGQGDKISYYR 324
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
NE + FI+ KI E + AILYR ++ + F + IP+ +
Sbjct: 325 AQNEHDEAQFIVSKIKEEQEKHG---YHFNDFAILYRTNAQSRMVEETFLKSSIPYTMVG 381
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI-----DHIDKIS 698
G FY ++ +R I+A L + D + RV KR I +H+ +
Sbjct: 382 GHKFYDRREIRDILAYLTLIVNPADSMSFERVVNT--------PKRGIGLTSVEHLRNFA 433
Query: 699 TIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
+ + AA ++ A R+++ + +++ A +T A
Sbjct: 434 NENGWTLLKAAQNVDTASEITARTRNKIDEFGQLM-----------------ANLTKQAE 476
Query: 759 MVPQKYLLEQRAVVDFDG-GKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQD 817
+ L EQ +++ G K+L++D L + Q ++ +F S T +E + D D
Sbjct: 477 YLTLTDLTEQ--ILELSGYNKMLSDDRSLEA--QARRENLDEFKSV--TQEYDEQHKDDD 530
Query: 818 KKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
L+ I+++++ + + +VTL T+H +KGLE+ +VF+ E
Sbjct: 531 DPN----LQKIINFLADLALVSDQDDVDEQAPAVTLMTLHAAKGLEFPVVFLVGMEEGIF 586
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLF-------ILYVMMDANWQLLQPSR 930
PL + +EEERRL YV +TRA+KKL+ +LY + N QPSR
Sbjct: 587 PLSRAL-----MEDDELEEERRLAYVGITRAKKKLYLTNAFSRLLYGRIQRN----QPSR 637
Query: 931 FLKEIPHHLREVQAEQSVQDQHENIPEGTAQFTINLP 967
F++EI L Q EN P G + LP
Sbjct: 638 FVEEIDSELL----------QFENSPSGNSIKDSKLP 664
>gi|392331344|ref|ZP_10275959.1| DNA helicase II [Streptococcus canis FSL Z3-227]
gi|391419023|gb|EIQ81835.1| DNA helicase II [Streptococcus canis FSL Z3-227]
Length = 771
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 209/736 (28%), Positives = 332/736 (45%), Gaps = 128/736 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q +A PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAQA-IQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R ++ K+ I+TFHS +++ R A+ + F I G+QR
Sbjct: 64 AAREMKER--ALALNPATKDTLIATFHSMCVRILRREADHIGYNRNFTIVDPGEQR---- 117
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI L D R+ L + S + L +E
Sbjct: 118 -----------TLMKRI-LKQLNLDPKKWNERSILGTI------SNAKNDLLDEKAYEAQ 159
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D+ +I A + Y LR ALD+ DLI +++L P++
Sbjct: 160 AADMYS--------------QIVARCYKAYQEELRRSEALDFDDLIMMTLRLFDNNPDLL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 AYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + K I L NYRST+ I++AA+ +I +N R + K + T N+ G +++ ++E
Sbjct: 266 EKDYPDAKVILLEENYRSTKKILQAANDVINNNRNR-RPKKLWTQNADGEQLVYYRANDE 324
Query: 589 DAQCAFIIDKILEHASNGPASIC-SYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
+ F+ I SN + ++ A+LYR + + A + IP+ + G
Sbjct: 325 RDEAIFVASTI----SNMSHELGKNFKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTK 380
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIRK 702
FY +K +R +IA L D+ + R+ E K+ V +D + + +
Sbjct: 381 FYSRKEIRDLIAYLTIVANPADNISFERIV-------NEPKRGVGPGTLDKLRQFAYESN 433
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + AA ++F + + G + + ++ L I +R++ + IT +A
Sbjct: 434 QSLLEAASNLFMSPLKG--------KAAQAMMDLAGILNQLRQDLETMS-ITDLA----- 479
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTK-----FTAAKEEGNVDQD 817
+ LLE+ +D L N L S Q + ++ +FLS A+ E D
Sbjct: 480 EALLEKTGYLDN-----LRLQNTLES--QARIENIEEFLSVTKNFDDVNASPEGEETGTD 532
Query: 818 KKG-CINVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIHQSKGLEWDIVFVAKANET 875
+ G +N L D T + E + VTL T+H +KGLE+ +VF+ E
Sbjct: 533 RLGRFLNDLALIAD-----------TDDSNPETAEVTLMTLHAAKGLEFPVVFLIGMEEG 581
Query: 876 EIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQP 928
PL +E +EEERRL YV +TRA + LF+ L+ D N +P
Sbjct: 582 VFPLSR-----ASEDPDELEEERRLAYVGITRAEEVLFLTNANTRTLFGKSDYN----RP 632
Query: 929 SRFLKEIPHHLREVQA 944
+RFL+EI L Q
Sbjct: 633 TRFLREISEELLSYQG 648
>gi|302390294|ref|YP_003826115.1| ATP-dependent DNA helicase PcrA [Thermosediminibacter oceani DSM
16646]
gi|302200922|gb|ADL08492.1| ATP-dependent DNA helicase PcrA [Thermosediminibacter oceani DSM
16646]
Length = 731
Score = 220 bits (561), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 212/736 (28%), Positives = 339/736 (46%), Gaps = 145/736 (19%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTT 288
YL LN++Q +A PLLI+AG GSGK G+ P +I+A+TFT
Sbjct: 3 YLSDLNEEQRKAVTHP-GGPLLILAGAGSGKTRVLTYRIAYLIEKMGVDPGSIMAITFTN 61
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA EM++RI ++ A+ + +STFHS +++ RS +KL F+I+ Q I
Sbjct: 62 KAAQEMKERIEKLL--PWARGMLVSTFHSACVRILRSDIDKLGYNKNFIIFDTQDQLVLI 119
Query: 349 IEAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
+ ++ L +EK K T +L G
Sbjct: 120 RDCIKALGLDEK----KYAPTAVLNYIGR------------------------------- 144
Query: 408 RDGMDVAKASGKTPAE----FRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
AK +TP E + I ++ + + E Y L+ NALD+ DLI +V+L
Sbjct: 145 ------AKDRLQTPEECHDRAKDIREKAMSRVYELYQKRLKESNALDFDDLIMKTVELFR 198
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADI 522
PEV YQ+ ++ I+VDE+QDT+ QY L+++LA H + +VGDDDQSI+ F GADI
Sbjct: 199 KNPEVLSYYQNRFRHILVDEYQDTNRAQYVLVKLLAEKHRNLCVVGDDDQSIYGFRGADI 258
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
F +DF + IRL +NYRST+ I++AA+S+I HN R Q K++ T+N G KI +
Sbjct: 259 RNILDFEEDFPDATVIRLEQNYRSTQNILDAANSVISHNFDRKQ-KSLWTENGRGDKIYL 317
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI 642
NE + AF I + +E N + A+LYR +V + + +P+ I
Sbjct: 318 ATLGNEHEE-AFFIAREIEKLVN--MKNFRFRDFAVLYRTNAQSRVLEEMMVKMGLPYKI 374
Query: 643 -HGVAFYRKKVVRAIIAMLRTTLPGCD--------DGPYRRVFKA---FLLLEKEEKKRV 690
GV FY+++ ++ I+A LR D + P R + +A L L EE+++
Sbjct: 375 VGGVRFYQRREIKDILAYLRVVANPSDNVSLLRIINVPRRGIGEATVETLKLLAEEREKS 434
Query: 691 IDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSIS 750
+ HI K S + + F ++MI +++ +
Sbjct: 435 VYHIMKEELAELSSRVRSKLRDF----------------------VDMIDDFIKKAGEL- 471
Query: 751 AVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDN--DLRSVLQYL--LADVTDFLSTKFT 806
SV +++ Y+L++ + K L +N D +S ++ L + V KF
Sbjct: 472 ----SVPDLIA--YILDRSGYL-----KELEAENTPDAQSRIENLKEMIGVAIEFEKKFP 520
Query: 807 AAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDI 866
A A D+++E + ++ ++V L T+H +KGLE+ +
Sbjct: 521 GA------------------ALQDFLAEIALVSDVDEFDEDRDAVILMTLHSAKGLEFPV 562
Query: 867 VFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM---MDANW 923
VF++ +E P + +EEERRL YV +TRA+K+L++ + N
Sbjct: 563 VFLSGMDEGIFP-----HSRAMFDEEELEEERRLCYVGITRAKKRLYLTRAWSRNLYGNT 617
Query: 924 QLLQPSRFLKEIPHHL 939
SRF+ EIP L
Sbjct: 618 SYYSASRFIDEIPARL 633
>gi|256380499|ref|YP_003104159.1| ATP-dependent DNA helicase PcrA [Actinosynnema mirum DSM 43827]
gi|255924802|gb|ACU40313.1| ATP-dependent DNA helicase PcrA [Actinosynnema mirum DSM 43827]
Length = 781
Score = 220 bits (561), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 209/742 (28%), Positives = 330/742 (44%), Gaps = 110/742 (14%)
Query: 238 PDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNIL 282
P + L LN Q A +PLL+VAG GSGK G P I+
Sbjct: 13 PSGTASLLDGLNPAQ-RRAVEHAGSPLLVVAGAGSGKTRVLTRRIAHLLAERGAHPGEIM 71
Query: 283 AMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHG 342
A+TFT AA+EM++R+ +VG A+ + +STFHS ++L R + L +S F IY
Sbjct: 72 AITFTNKAAAEMKERVADLVGP-RARSMWVSTFHSMCVRLVRREHKALGISSSFSIYDSD 130
Query: 343 QQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQ 402
RR I R L+ L KR L H ++ L +
Sbjct: 131 DTRRLITLVARDLD----LDPKRYPARTLAI--HISNLKNEL---------------VGP 169
Query: 403 YNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLL 462
+ E G D+ R++ + GA Y L N++D+ DLI +V+LL
Sbjct: 170 AHAAEVAGNDLE----------RRVAEVYGA-----YQRRLVESNSMDFDDLIMRTVELL 214
Query: 463 STFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-------RITIVGDDDQSIF 515
P V + Y ++ ++VDE+QDT+ QY+L++ L + +VGD DQSI+
Sbjct: 215 QNNPAVAEHYHRRFRHVLVDEYQDTNHAQYTLVRELVGTGSDGVPPAELCVVGDADQSIY 274
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+F GA I F +D+ + L +NYRST+ I+ AA+++I N R K + +D
Sbjct: 275 AFRGATIRNIVEFERDYPQATTVLLEQNYRSTQTILTAANAVISRNPDRRD-KRLWSDLG 333
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G KI+ NE + AF+ +I G A + G IA+ YR +VF+ F
Sbjct: 334 DGEKIVGYVADNEHDEAAFVAREIDRLVDGGDA---NNGEIAVFYRTNNQSRVFEEIFIR 390
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+P+ + GV FY ++ VR +A LR D RRV K+ + D
Sbjct: 391 LGLPYKVVGGVRFYERREVRDALAYLRVLSNPDDTVSLRRVLNV-------PKRGIGDRA 443
Query: 695 DK-ISTI---RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKL---VRREP 747
+ ++T + SF +A K+ RSQ R + +E++ +L V R
Sbjct: 444 EACVATYAERERVSFATALRAAVAGKVPLLNPRSQ----RAISGFVELLDELRAGVERGD 499
Query: 748 SISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTA 807
+++V+ V + Y E A D + N+L +V + + +A
Sbjct: 500 DVASVLEEVLDRT--AYRAELEASDDPQDHTRVENLNELVTVAREF---------GELSA 548
Query: 808 AKEEGN-VDQDKKG--CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEW 864
+ +G V++ G L AF++ +S + + +++ VTL T+H +KGLE+
Sbjct: 549 VEPDGEPVEEPDPGQPVAGSLDAFLERVS-LVADADQVPDAESDGVVTLMTLHTAKGLEY 607
Query: 865 DIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQ 924
+VF + P + EERRL YV +TRA+++L++ ++ + W
Sbjct: 608 PVVFCTGWEDGVFPHTRALGDPAE-----LSEERRLAYVGITRAQQRLYLSRALVRSAWG 662
Query: 925 LLQP-----SRFLKEIPHHLRE 941
QP SRFL EIP L E
Sbjct: 663 --QPAANPASRFLDEIPADLLE 682
>gi|416854451|ref|ZP_11910886.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa 138244]
gi|334844015|gb|EGM22595.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa 138244]
gi|453043212|gb|EME90945.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa PA21_ST175]
Length = 669
Score = 220 bits (561), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 194/721 (26%), Positives = 333/721 (46%), Gaps = 115/721 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+A+TFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAYLVQQCGIRAQYIVAVTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ K LT+STFH+ L + R E+L F I+ + +
Sbjct: 60 AAREMKERVGTLLRGGEGKGLTVSTFHNLGLNIIRKEHERLGYKPGFSIFDESDIKALLT 119
Query: 350 EAVRLLENEKILVVKRISTDMLTTDG------HFGYMRASLFMMNAMLFFSMSSFKLCQY 403
+ ++ K S D DG + G + L + L
Sbjct: 120 D----------IMQKEYSGD----DGVDEIKNYIGAWKNDLILPEEAL------------ 153
Query: 404 NKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
+ P E + A + +Y LR+ NA+D+ DLI VKL
Sbjct: 154 ------------EKARNPKE------QTAAIVYLHYQRTLRAYNAVDFDDLILQPVKLFQ 195
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-RITIVGDDDQSIFSFNGADI 522
P+V Q++Q+ + ++VDE+QDT+A QY L+++L + T+VGDDDQSI+++ GA
Sbjct: 196 EHPDVLQKWQNKVRYMLVDEYQDTNASQYLLVKLLVKDRAQFTVVGDDDQSIYAWRGARP 255
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
++DF + K + L +NYRST I++ A+ LI +N + K + ++ HG I +
Sbjct: 256 ENLMQLKEDFPSLKVVMLEQNYRSTSRILKCANVLIANNPHVFE-KQLWSEMGHGDPIRV 314
Query: 583 KECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
C NEDA+ I +I L + P Y AILYR K+ + + +IP+
Sbjct: 315 IRCRNEDAEAEHIAMEILTLHLRTERP-----YSEFAILYRGNHQAKLMELKLQHHQIPY 369
Query: 641 NIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIST 699
+ G +F+ ++ V+ +++ R + DD + RV + +E ++ + +T
Sbjct: 370 RLSGGTSFFGRQEVKDLMSYFRLLVNPDDDNAFLRVIN---VPRREIGSATLEKLGNYAT 426
Query: 700 IRKCSFISAACDIFG-AKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
RK S + AACD G A+ + +L + ++ + +RR+ + + I + +
Sbjct: 427 QRKIS-MYAACDEMGLAEHLDSRFHERLQRFKRWM-------DGIRRQCAENEPIAVLRS 478
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
M V+D D L ++ V ++ +++V F + +++D+
Sbjct: 479 M-----------VMDIDYENWLRQNASSDKVAEFRMSNVW------FLIEALKNTLERDE 521
Query: 819 KGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
+G + + +A I + R+ + + + V + T+H SKGLE+ VF+ E +P
Sbjct: 522 EGDMTIEQA-IAKLVLRDMLERQQEEEEGAEGVQMMTLHASKGLEFPYVFIMGMEEEILP 580
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEI 935
+ +VEEERRL YV +TRAR+ L + + + + PSRFL E+
Sbjct: 581 HRSSI------EADTVEEERRLAYVGITRARQNLAMTFAAKRKQYGEIIDCSPSRFLDEL 634
Query: 936 P 936
P
Sbjct: 635 P 635
>gi|308180103|ref|YP_003924231.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|380032057|ref|YP_004889048.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum WCFS1]
gi|418274686|ref|ZP_12890184.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp.
plantarum NC8]
gi|308045594|gb|ADN98137.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|342241300|emb|CCC78534.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum WCFS1]
gi|376010252|gb|EHS83578.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp.
plantarum NC8]
Length = 755
Score = 220 bits (561), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 203/726 (27%), Positives = 332/726 (45%), Gaps = 116/726 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +ND+Q EA D PLLI+AG GSGK G++P N+LA+TFT
Sbjct: 7 LAGMNDKQQEAVL-DTEGPLLIMAGAGSGKTRVLTHRVAYLIEEQGVNPWNVLAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+G ++G+ +A+E+ +STFH+ +++ R E++ F I G +QR
Sbjct: 66 AAREMRERVGKLLGE-SAQEVWVSTFHALCVRILRRDIEQIGYNRAFTIAGTSEQR---- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+VKRI T+ +++ F S K +
Sbjct: 121 -----------TLVKRILTEQ---------------NIDSKKFDPRSILSAISNAKNDLQ 154
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
++ K S +P E + A + Y L + A+D+ DLI +++L PE
Sbjct: 155 TPEMYKESAASPFE------SVVADVYLQYQRELAADQAVDFDDLIMLTIQLFKQNPETL 208
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSF 528
YQ+ + I VDE+QDT+ QY+L+ +LA + + +VGD DQSI+ + GA++ F
Sbjct: 209 AWYQNKFHYIHVDEYQDTNNAQYTLVNLLADKYKNLCVVGDADQSIYGWRGANMENILDF 268
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ + L +NYRST+ I+ AA+++I +N R + K + T+N G KI +E
Sbjct: 269 EKDYPQADTVMLEQNYRSTKTILSAANAVINNNSTR-RPKKLWTENEPGDKISYYRGQSE 327
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ F+I KI E YG AILYR +V + + + IP+ + G F
Sbjct: 328 SDETHFVIAKIQESMQQDK---MDYGDFAILYRTNAQSRVMEESLVKANIPYTMVGGNKF 384
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVF---KAFLLLEKEEKKRVI------DHIDKIS 698
Y +K +R +++ L + D + RV K + EK R+ ++ S
Sbjct: 385 YDRKEIRDVLSYLTLAVNDQDSMNFERVVNEPKRGIGQTSVEKLRLFADEAGYSMLEAAS 444
Query: 699 TIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
+ + ISA AK + T ++L R+ L ++ +++ R + A+ + A
Sbjct: 445 NVDMANGISARAKGALAKFAATM--NELRAMREYLSVTDLTQEILDRTGYMKALKDAKAT 502
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST--KFTAAKEEGNVDQ 816
LE +A ++ ++ +FLS +F + + + D
Sbjct: 503 KS-----LEAQARIE----------------------NIEEFLSVTKQFDDSYQPEDEDS 535
Query: 817 DKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
DK F+D++++ + +VTL T+H +KGLE+ +VF+ E
Sbjct: 536 DK---------FVDFLADLALVSDVDNVEEEPQAVTLMTLHAAKGLEFPVVFLIGMEEGI 586
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLK 933
PL +EEERRL YV +TRA KKL++ M+ Q SRF++
Sbjct: 587 FPLSR-----AMMDEDELEEERRLAYVGITRAEKKLYLTNAYSRMLYGRRQNNPASRFVE 641
Query: 934 EIPHHL 939
EI L
Sbjct: 642 EIEPEL 647
>gi|424034586|ref|ZP_17773991.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HENC-01]
gi|408872635|gb|EKM11850.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HENC-01]
Length = 671
Score = 220 bits (561), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 200/734 (27%), Positives = 348/734 (47%), Gaps = 97/734 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G +GKA +K L +STFH+ L + + + L + F ++
Sbjct: 62 EMKERVGQTLGKAESKGLMVSTFHTLGLNIIKREYKHLGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R L +S++K N
Sbjct: 110 ---DQDQLALLKELTEKQL--DGDKDLLR--------QLLSCISNWK----NDMLTPEQA 152
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
A A G+ F A E Y +++ NALD+ DLIS V+LL EV Q +
Sbjct: 153 KALAQGEQQQLF--------AFCFEMYQKQMKAYNALDFDDLISLPVQLLRNNQEVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQ-ILASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L++ I+ R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QNRIRYLLVDEYQDTNTSQYDLVKLIVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
+ N + I+L +NYRST I+ AA+ LI +N + K++ ++ G K+ + NE+ +
Sbjct: 265 YPNLRLIKLEQNYRSTSRILRAANILIANNPHVYE-KSLFSEIPDGEKLKVLLAKNEEHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +++ H + Y AILYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AERVTGELIAHKF---LNRTEYKDYAILYRGNHQSRLIEKSLMQNRVPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ +E ++ + + +R S +
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PRREIGPVTLEKLGSYANMRGKSLFEVS- 436
Query: 711 DIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRA 770
F + L R+ L I+ R ++ AV + V ++ + +L E A
Sbjct: 437 --FEMGLEQHLTGRGLENLRRFTQWLVAIADQAERGDTVEAVRSLVRDIHYEDWLYETSA 494
Query: 771 VVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAFI 829
+ + +V+D S + A EG N DQ++K LK +
Sbjct: 495 SP---------------KAAEMRMKNVSDLYS--WIVADLEGDNYDQEEK----TLKEVV 533
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
++ R+ R + ++ ++V L T+H SKGLE+ V++ + E +P H+ +++E
Sbjct: 534 QRLTLRDMME-RGEEDEDSDAVQLMTLHASKGLEFPFVYLIGSEEGILP--HQ--TSIDE 588
Query: 890 KGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAEQ 946
+VEEERRL+YV +TRA+++L F + +L++P SRFL E+P E +A +
Sbjct: 589 --DNVEEERRLMYVGITRAQRELTFTMCKERRQFGELIKPTQSRFLDELPFDDVEWEANK 646
Query: 947 SVQDQHENIPEGTA 960
E + +G A
Sbjct: 647 KPVSAEERMAKGQA 660
>gi|424743025|ref|ZP_18171342.1| putative ATP-dependent DNA helicase Rep [Acinetobacter baumannii
WC-141]
gi|422943670|gb|EKU38683.1| putative ATP-dependent DNA helicase Rep [Acinetobacter baumannii
WC-141]
Length = 679
Score = 220 bits (560), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 198/720 (27%), Positives = 334/720 (46%), Gaps = 112/720 (15%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAAS 292
LN++Q E A PLL++AG GSGK I I AMTFT AA
Sbjct: 7 LNNKQ-EEAMKYTQGPLLVLAGAGSGKTSVITRKIAYLVQHCRIPAHRITAMTFTNKAAR 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ ++ + +K L++STFH+F L L R + L + F +I++A
Sbjct: 66 EMKERVTKLLSREESKGLSVSTFHTFGLNLLRLELKNLPLKANF----------SILDAD 115
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM- 411
KRI D++ D G L A +S +K D +
Sbjct: 116 D---------CKRILMDLMHRDNLSGAESKELI---AKAMKKISDWK--------NDLIV 155
Query: 412 -DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
+ A ++ +TP + + A + + Y LR+ NA+D+ DLI +LL EV
Sbjct: 156 PEQAHSTCETPEDVQ------FAHLYQLYERNLRAYNAVDFDDLIVMPTRLLQENAEVRD 209
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFR 529
++Q+ + ++VDE+QDT+ QY L+++L + T VGDDDQSI+++ GA +
Sbjct: 210 KWQNRVRYLLVDEYQDTNTAQYILVKLLVGVMGQFTAVGDDDQSIYAWRGAKPENMALLK 269
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
+DF N I+L +NYRST I++AA+ +IQ+N K + +D HG I I C N+D
Sbjct: 270 QDFPNLHIIKLEQNYRSTSRILKAANCVIQNNPHIFD-KKLWSDKGHGEVIRIITCRNDD 328
Query: 590 AQCAFIIDKILEHA-SNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAF 647
+ ++ +L H NG ++ A+LYR +V +T R+ +IP+ + G +F
Sbjct: 329 DEAERVVKDLLTHKLMNGK----NWKDYAVLYRGNFQARVLETQLRQMQIPYKLSGGTSF 384
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI-----DHIDKISTIRK 702
+ + ++ +++ LR + DD + R+ KR I + + S
Sbjct: 385 FARAEIKDVMSYLRLIINPEDDSAFLRIINT--------PKRAIGPVTLEKLGLFSQENN 436
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ D + + +QL + + T +L+ + + V +
Sbjct: 437 LSLLGASADQRLSMVLPKKAETQLHEFADFIATF--TRELLEDDEPVPKVRQMMNEAGYM 494
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
Y+ EQ A + KL N +N L + +Q L+ D D+K
Sbjct: 495 DYVREQSATPAQEKSKLDNIEN-LFTSIQNLINRAEDV----------------DEKNIE 537
Query: 823 NVLKAFI--DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
+V++ + D + +++ E ++ + V L T+H +KGLE+ V++ E +P
Sbjct: 538 SVIRKLVLLDLLEQQQEE-------EDTDKVNLLTLHAAKGLEFPYVYIMGLEEELLP-- 588
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDAN---WQLLQPSRFLKEIPH 937
H+ + A ++EEERRL+YV +TRAR+ L + N + + PSRFL E+P
Sbjct: 589 HKNSIA----AETIEEERRLMYVGITRARQGLTLTLAEQRKNGGQMKQMTPSRFLDELPQ 644
>gi|444428892|ref|ZP_21224184.1| ATP-dependent DNA helicase Rep [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444237881|gb|ELU49527.1| ATP-dependent DNA helicase Rep [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 671
Score = 220 bits (560), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 200/734 (27%), Positives = 348/734 (47%), Gaps = 97/734 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G +GKA +K L +STFH+ L + + + L + F ++
Sbjct: 62 EMKERVGQTLGKAESKGLMVSTFHTLGLNIIKREYKYLGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R L +S++K N
Sbjct: 110 ---DQDQLALLKELTEKQL--DGDKDLLR--------QLLSCISNWK----NDMLTPEQA 152
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
A A G+ F A E Y +++ NALD+ DLIS V+LL EV Q +
Sbjct: 153 KALAQGEQQQLF--------AFCFEMYQKQMKAYNALDFDDLISLPVQLLRNNEEVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQ-ILASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L++ I+ R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QNRIRYLLVDEYQDTNTSQYDLVKLIVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
+ N + I+L +NYRST I+ AA+ LI +N + K++ ++ G K+ + NE+ +
Sbjct: 265 YPNLRLIKLEQNYRSTSRILRAANILIANNPHVYE-KSLFSEIPDGEKLKVLLAKNEEHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +++ H + Y AILYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AERVTGELIAHKF---LNRTEYKDYAILYRGNHQSRLIEKSLMQNRVPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ +E ++ + + +R S +
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PRREIGPVTLEKLGSYANMRGKSLFEVS- 436
Query: 711 DIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRA 770
F + L R+ L I+ R ++ AV + V ++ + +L E A
Sbjct: 437 --FEMGLEQHLTGRGLENLRRFTQWLVAIADQAERGDTVEAVRSLVRDIHYEDWLYETSA 494
Query: 771 VVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAFI 829
+ + +V+D S + A EG N DQ++K LK +
Sbjct: 495 SP---------------KAAEMRMKNVSDLYS--WIVADLEGDNYDQEEK----TLKEVV 533
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
++ R+ R + ++ ++V L T+H SKGLE+ V++ + E +P H+ +++E
Sbjct: 534 QRLTLRDMME-RGEEDEDSDAVQLMTLHASKGLEFPFVYLIGSEEGILP--HQ--TSIDE 588
Query: 890 KGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAEQ 946
+VEEERRL+YV +TRA+++L F + +L++P SRFL E+P E +A +
Sbjct: 589 --DNVEEERRLMYVGITRAQRELTFTMCKERRQFGELIKPTQSRFLDELPFDDVEWEANK 646
Query: 947 SVQDQHENIPEGTA 960
E + +G A
Sbjct: 647 KPVSAEERMAKGQA 660
>gi|422909545|ref|ZP_16944190.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HE-09]
gi|341634796|gb|EGS59533.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HE-09]
Length = 671
Score = 220 bits (560), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 204/735 (27%), Positives = 358/735 (48%), Gaps = 99/735 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ +GK ++ L +STFH+ L + R + L + F ++
Sbjct: 62 EMKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R +L ++S++K D +
Sbjct: 110 ---DQDQLALLKELTEKQL--DGDKDLLR--------LLLSTISNWK--------NDMLT 148
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
+A E ++ A E Y ++S NALD+ DLI V LL EV Q +
Sbjct: 149 PPQAKSMAKGE----QQQLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRNNEEVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L+++L R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F + K I+L +NYRST I+ AA+ LI +N Q K + ++ + G K+ + +NED +
Sbjct: 265 FPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQ-KALFSELAEGEKLKVILANNEDHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +I+ H + Y AILYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AERVTAEIIAHKF---LNRTEYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ ++E ++ + + +R S +A+
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PKREIGPATLEKLGSYANMRGKSLFTASF 437
Query: 711 DI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQR 769
++ +SG L R+ L I+ R ++ A+ + V ++ + +L E
Sbjct: 438 ELGLEQHLSG----RGLDNLRRFTEWLVAIADNAERGNTVEALRSLVRDIRYEDWLYETS 493
Query: 770 AVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAF 828
A + + +V+D S + A EG N DQ +K LK
Sbjct: 494 ASP---------------KAAEMRMKNVSDLYS--WIVADLEGDNPDQQEKS----LKEV 532
Query: 829 IDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVN 888
+ ++ R+ R + +D+ ++V L T+H SKGLE+ V++ A E +P H+ +++
Sbjct: 533 VQRLTLRDMME-RGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILP--HQ--TSID 587
Query: 889 EKGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAE 945
E+ +VEEERRL+YV +TRA+++L F++ +L++P SRFL E+P E + +
Sbjct: 588 EE--NVEEERRLMYVGITRAQRELTFMVCKERRQFGELIKPTQSRFLDELPQEDIEWEVK 645
Query: 946 QSVQDQHENIPEGTA 960
+ V Q E + +G A
Sbjct: 646 KKVVTQEERMAKGQA 660
>gi|441505896|ref|ZP_20987876.1| ATP-dependent DNA helicase Rep [Photobacterium sp. AK15]
gi|441426626|gb|ELR64108.1| ATP-dependent DNA helicase Rep [Photobacterium sp. AK15]
Length = 671
Score = 220 bits (560), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 204/735 (27%), Positives = 344/735 (46%), Gaps = 99/735 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK NI A+TFT AA
Sbjct: 3 LNPRQTEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCDYKARNIAALTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G +G+ AK L +STFH+ L + R + L + F ++ Q + E
Sbjct: 62 EMKERVGQTLGRQEAKGLMVSTFHTLGLNIIRREYKALGLKASFSLFDDQDQMALLKELT 121
Query: 353 RL-LENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
LE +K L+ + +ST +S++K D +
Sbjct: 122 ETELEGDKDLLKQLLST--------------------------ISNWK--------NDML 147
Query: 412 DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQE 471
+A+ +E D++ A + Y +++ NALD+ DLI V LL EV Q
Sbjct: 148 SPGEAAAYAKSE----RDQLFAHCYDMYQKQMKAYNALDFDDLILMPVLLLRDNQEVRQR 203
Query: 472 YQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRK 530
+Q+ + ++VDE+QDT+ QY +++L +R T+VGDDDQSI+S+ GA K
Sbjct: 204 WQNRIRYLLVDEYQDTNTSQYLFVKLLVGERSRFTVVGDDDQSIYSWRGAQPENLALLNK 263
Query: 531 DFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDA 590
DF + K I+L +NYRST I+ A+ LI +N K + ++ G + + NED
Sbjct: 264 DFPSLKVIKLEQNYRSTSRILRTANILIANNPHLFD-KALFSEIPDGELLKVITAKNEDH 322
Query: 591 QCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG-VAFYR 649
+ ++ +++ H + +Y A+LYR ++ + A + +IP+ I G +F+
Sbjct: 323 EAEKVVGELIAHRF---LNNTAYKDYAVLYRGNHQSRLIEKALMQNRIPYKISGGTSFFA 379
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAA 709
+ ++ I+A LR DD + R+ +E ++ + + +R S +A+
Sbjct: 380 RAEIKDIMAYLRLLTNVDDDNAFLRIVNT---PRREIGPVTLEKLGTYANMRGKSLFAAS 436
Query: 710 CDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQ 768
++ +SG S R ++ +S R +++AV + ++ + +L E
Sbjct: 437 FELGLEQHLSGRGLESLQRFTRWIV----ELSDNAERGDTVAAVRQLIRDINYEDWLYET 492
Query: 769 RAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAF 828
A + + +V+D S TA E N DQ+ + LK
Sbjct: 493 SASP---------------KAAEMRMKNVSDLYSW-ITADLEGDNYDQE----VKTLKEV 532
Query: 829 IDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVN 888
+ ++ R+ R + D+ + V L T+H SKGLE+ V++ A E +P H+ +++
Sbjct: 533 VQRLTLRDMME-RGEDDDDADQVQLMTLHASKGLEFPYVYLIGAEEGILP--HQ--TSID 587
Query: 889 EKGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLL--QPSRFLKEIPHHLREVQAE 945
E +VEEERRL YV +TRA+K+L F L +LL +PSRFL E+P +A+
Sbjct: 588 ED--NVEEERRLAYVGITRAQKELTFTLCKERRQFGELLKPEPSRFLYELPQDDLAWEAD 645
Query: 946 QSVQDQHENIPEGTA 960
+ Q E + +G A
Sbjct: 646 KKPMTQQERMQKGQA 660
>gi|254483238|ref|ZP_05096470.1| ATP-dependent DNA helicase Rep [marine gamma proteobacterium
HTCC2148]
gi|214036461|gb|EEB77136.1| ATP-dependent DNA helicase Rep [marine gamma proteobacterium
HTCC2148]
Length = 665
Score = 220 bits (560), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 193/717 (26%), Positives = 341/717 (47%), Gaps = 108/717 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + P+L++AG GSGK GI S I A+TFT
Sbjct: 1 MSQLNPRQREA-VRYIDGPMLVLAGAGSGKTSVITRKIAYLVETCGIRASRIAAVTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G ++G + + LT+STFH L++ R+ + L S F I+ GQ + +I
Sbjct: 60 AAREMKERVGKLLGTHSTEGLTVSTFHQLGLKIIRTERKLLGLKSGFSIF-DGQDTQTLI 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ + + E+ +DG +S Q + ++ D
Sbjct: 119 KDLLIQEH--------------GSDG------------------DQASTIQNQISNWKND 146
Query: 410 GM--DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ + A A K+PAE + A Y L++ NALD+ DLI L P+
Sbjct: 147 RVLPEQAVAHAKSPAEI------LCAQAYRRYQRALKAYNALDFDDLILLPTVLFEQNPD 200
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLL-QILASHNRITIVGDDDQSIFSFNGADISGFD 526
+++Q++ ++VDE+QDT++ QY L+ Q++ +T+VGDDDQSI+++ GA
Sbjct: 201 TLEKWQNTIHYLLVDEYQDTNSSQYLLVKQLVGVRGALTVVGDDDQSIYAWRGARPENLV 260
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
+ DF K ++L +NYRST I++AA++LI +N K + ++ +G + + C
Sbjct: 261 QLQDDFPGLKLVKLEQNYRSTSRILKAANTLIANN-DHVFDKKLWSEIGYGDPLRVIRCS 319
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GV 645
+E+ + ++ +IL+H +G AILYR ++ + A +++++P+++ G
Sbjct: 320 DENHEAEQVVAEILDHKLR---KRTRFGDYAILYRGNHQSRLIELALQQQQVPYHLSGGT 376
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSF 705
+F+ + V+ I+A LR + DD + R+ + ++ ++ + + + CS
Sbjct: 377 SFFARNEVKDIMAYLRLLINENDDNAFLRIAN---VPRRKLGASTLESLGSFANEQHCSL 433
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYL 765
A G SGT + L + R+ L ++ I + ISA+ + +M + +
Sbjct: 434 SQA----IGRVGSGTLPEAGLGRLREFRLWMDRIRRQCEGGGGISAIRQMIRDMEYEDW- 488
Query: 766 LEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVL 825
LN+ + V + +++V + + EEG V+ D VL
Sbjct: 489 --------------LNQLSSSEQVAERRMSNVHFLIDSLNKVMVEEG-VELDDAIARLVL 533
Query: 826 KAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNG 885
+ D + ++E E + ++V L T+H SKGLE+ VF+ E +P +
Sbjct: 534 R---DLLEQQEEE------DSSPDNVQLMTMHASKGLEFPHVFIIGMEENLLP-----HR 579
Query: 886 AVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQL-----LQPSRFLKEIPH 937
A E G ++ EERRL YV +TRA++ L + M Q +PSRF+ E+P
Sbjct: 580 ASVEDG-NIAEERRLAYVGITRAQQTLAM--TMAAKRRQFGETINCEPSRFIDELPQ 633
>gi|422846361|ref|ZP_16893044.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK72]
gi|325687804|gb|EGD29824.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK72]
Length = 762
Score = 220 bits (560), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 212/730 (29%), Positives = 335/730 (45%), Gaps = 116/730 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R + K A+E I+TFHS +++ R A+ + F I G +QR
Sbjct: 64 AAREMRERAEKL--KTEAQECLITTFHSLCIRVLRREADHIGYNRNFTIVGPSEQR---- 117
Query: 350 EAVRLLENEKILVVKRISTDM-LTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
++KRI ++ L +D RA + ++S+ K
Sbjct: 118 -----------TLMKRILNNINLNSDEEKWNERA--------ILGTISNAK--------N 150
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
D +D + ++ EI A Y LR A+D+ DLI +++L P+V
Sbjct: 151 DLIDEEAYANLAGDKYT----EIVAKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQNPDV 206
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDS 527
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+
Sbjct: 207 LTYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILD 266
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KD+ K + L NYRST+ I++AA+ +I++N R KN+ T N G +I+ +
Sbjct: 267 FEKDYPEAKVVLLEENYRSTKTILQAANEVIRNNRNRRP-KNLWTQNEDGEEIVYYRAKD 325
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG-VA 646
E + F+ I + + G SY A+LYR + + A + +P+ + G
Sbjct: 326 EKDEALFVARTIAQLSREG----YSYKDFAVLYRTSAQSRTVEEALLKGNMPYTMVGSTQ 381
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIRK 702
FY +K +R +I+ L D+ Y RV E K+ V +D I ++ ++
Sbjct: 382 FYSRKEIRDVISYLNLIANPSDNISYERVV-------NEPKRGVGPGTVDKIRDFASSQE 434
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ +I + + G ++ + +LL L RE +T + V +
Sbjct: 435 ISLLDASANILLSPVKGKAAQA-VYDFANMLLDL--------RERLDDYTVTELVEAVLE 485
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
K G Q + ++ +FLS T +E + + + +
Sbjct: 486 K------------TGYATALAAQATLESQARIENIEEFLSV--TKNFDESSDNPADESGL 531
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENS-VTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
+ L F++ ++ T D ++S VTL T+H +KGLE+ +VF+ E P
Sbjct: 532 DKLSRFLNDLALIAD----TDDVDQDSSEVTLMTLHAAKGLEFPVVFIIGMEENIFPFKW 587
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKE 934
G EK +EEERRL YV +TRA K ILY + +AN ++L QP+ FL+E
Sbjct: 588 ---GESKEK--DLEEERRLAYVGITRAEK---ILY-LTNANSRMLYGKTNCNQPTCFLRE 638
Query: 935 IPHHLREVQA 944
I L + Q
Sbjct: 639 ISSALLDYQG 648
>gi|289423398|ref|ZP_06425202.1| ATP-dependent DNA helicase PcrA [Peptostreptococcus anaerobius
653-L]
gi|289156156|gb|EFD04817.1| ATP-dependent DNA helicase PcrA [Peptostreptococcus anaerobius
653-L]
Length = 786
Score = 220 bits (560), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 210/731 (28%), Positives = 344/731 (47%), Gaps = 118/731 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN Q +A P+LI+AG GSGK I+PSNILA+TFT
Sbjct: 3 LDGLNPAQRQA-VERTEGPVLILAGAGSGKTKVLTTRISYLVEDKNINPSNILAITFTNK 61
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EMR+R+ SI+G+ + +++ ISTFHS +++ R K+ F+IY Q I
Sbjct: 62 AANEMRERVESIIGEES-RDMWISTFHSCCVRILRKDINKIGYNRSFVIYDSTDQLTLIK 120
Query: 350 EAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
E ++ L+ N+K KFE
Sbjct: 121 ECIKALDLNDK---------------------------------------------KFEP 135
Query: 409 DGMDVAKASGKT----PAEFRKI--GD---EIGAAILENYNGILRSCNALDYHDLISCSV 459
+ +S K P E+ + GD + A + Y L ALD+ DLI +V
Sbjct: 136 RALIAEISSAKDKLMDPKEYARYVSGDFWLDTVAQVFALYQERLMRNGALDFDDLIFKTV 195
Query: 460 KLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFN 518
+LL + +V Y+ ++ I+VDE+QDTS QY L+++LA H I +VGDDDQSI+ +
Sbjct: 196 ELLKSNEDVLNFYRARFRYIMVDEYQDTSKAQYELVKLLAMGHQNICVVGDDDQSIYGWR 255
Query: 519 GADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGS 578
GADI F KD+ ++L +NYRST+ I++ A+ LI +N++R + K + +D G
Sbjct: 256 GADIRNILEFEKDYNKVFVVKLEQNYRSTQVILDTANHLIANNIERKK-KRLWSDKKDGE 314
Query: 579 KIIIKECHNEDAQCAFIIDKILEHAS--NGPASICSYGSIAILYRRQVSGKVFQTAFRER 636
+ +K NE + +++++I E+AS N P Y A+LYR + + A
Sbjct: 315 LVKVKCLRNEVEEANYVVNEIYENASRTNRP-----YSDYAVLYRANAQARAIEDALNRF 369
Query: 637 KIPFNIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHID 695
+IP+NI+ G FY +K ++ ++A +R + DD +R+ + + + I+ ++
Sbjct: 370 QIPYNIYGGTKFYERKEIKDLLAYIRVIVNPQDDISVKRIIN---IPRRGIGLKTIEKLE 426
Query: 696 KISTIRKCSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+++ K S S D+ + IS K+ G + L I + + S S ++
Sbjct: 427 DRASMMKESLYSVLLDVDNNSDISTKAKK-----GINEFVDLIGIFRSLAESYSPSKMVE 481
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
+ M Y LE +V K +N Q + ++ +F+S + + +
Sbjct: 482 KILEMTG--YTLELEEIVK----KNEKMENGKAQEAQDRIDNLMEFISIAIEYEQSDVFM 535
Query: 815 DQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
++ K L+ F+ IS + + V+L T+H SKGLE+ +VF+ E
Sbjct: 536 EEAKN-----LQNFLANIS--LASDTEGEEEEFVEKVSLMTLHSSKGLEFPVVFMIGMEE 588
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQ 927
P+ + +S+EEERRL YV +TRA ++L++ LY + N +
Sbjct: 589 KIFPIARAISTMEE---SSIEEERRLCYVGITRAMRELYMTQAASRTLYGKTNVNLK--- 642
Query: 928 PSRFLKEIPHH 938
SRFLKE+P
Sbjct: 643 -SRFLKELPEE 652
>gi|424044820|ref|ZP_17782399.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HENC-03]
gi|408887373|gb|EKM25973.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HENC-03]
Length = 671
Score = 220 bits (560), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 197/737 (26%), Positives = 349/737 (47%), Gaps = 97/737 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G +GK+ +K L +STFH+ L + + + L + F ++
Sbjct: 62 EMKERVGQTLGKSESKGLMVSTFHTLGLNIIKREYKHLGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R L S+S++K D +
Sbjct: 110 ---DQDQLALLKELTEKQL--DGDKDLLR--------QLLSSISNWK--------NDMLT 148
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
+A E ++ A E Y +++ NALD+ DLIS V+LL EV Q +
Sbjct: 149 PEQAKALAQGE----QQQLFAFCFEMYQKQMKAYNALDFDDLISLPVQLLRNNEEVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQ-ILASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L++ I+ R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QNRIRYLLVDEYQDTNTSQYDLVKLIVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
+ N + I+L +NYRST I+ AA+ LI +N + K++ ++ G K+ + NE+ +
Sbjct: 265 YPNLRLIKLEQNYRSTSRILRAANILIANNPHVYE-KSLFSEIPDGEKLKVLLAKNEEHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +++ H + Y AILYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AERVTGELIAHKF---LNRTEYKDYAILYRGNHQSRLIEKSLMQNRVPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ +E ++ + + +R S +
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PRREIGPVTLEKLGSYANMRGKSLFEVS- 436
Query: 711 DIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRA 770
F + L R+ L I+ R ++ AV + V ++ + +L E A
Sbjct: 437 --FEMGLEQHLTGRGLENLRRFTQWLVAIADQAERGDTVEAVRSLVRDIHYEDWLYETSA 494
Query: 771 VVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAFI 829
+ + +V+D S + A EG N DQ++K LK +
Sbjct: 495 SP---------------KAAEMRMKNVSDLYS--WIVADLEGDNYDQEEK----TLKEVV 533
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
++ R+ R + ++ ++V L T+H SKGLE+ V++ + E +P H+ +++E
Sbjct: 534 QRLTLRDMME-RGEEDEDSDAVQLMTLHASKGLEFPFVYLIGSEEGILP--HQ--TSIDE 588
Query: 890 KGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAEQ 946
+VEEERRL+YV +TRA+++L F + +L++P SRFL E+P E + +
Sbjct: 589 --DNVEEERRLMYVGITRAQRELTFTMCKERRQFGELIKPTQSRFLDELPFDDVEWEVNK 646
Query: 947 SVQDQHENIPEGTAQFT 963
E + +G A
Sbjct: 647 KPVSAEERMAKGQAHIA 663
>gi|359780873|ref|ZP_09284098.1| ATP-dependent DNA helicase Rep [Pseudomonas psychrotolerans L19]
gi|359370933|gb|EHK71499.1| ATP-dependent DNA helicase Rep [Pseudomonas psychrotolerans L19]
Length = 670
Score = 219 bits (559), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 200/737 (27%), Positives = 327/737 (44%), Gaps = 116/737 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA +S PLL++AG GSGK GI I A+TFT
Sbjct: 1 MSKLNPRQAEAVAY-ISGPLLVLAGAGSGKTSVITRKIAYLVQQCGIRAQYICAVTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ R+ S++ + LT+STFH+ L + R E L F I+ G
Sbjct: 60 AAREMKARVASLLKAGEGRGLTVSTFHNLGLNIIRREYEHLGYKPGFSIFDEGD------ 113
Query: 350 EAVRLLENEKILVVKRISTDMLTTD--GHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
+K + TD++ + G G ++ N ++
Sbjct: 114 -------------IKALLTDIMQKEYQGDDGLDEIKNYIGN-----------------WK 143
Query: 408 RDGM--DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
D + D A +TP E + A + +Y L++ NA+D+ DLI VKL
Sbjct: 144 NDLILPDEALEKARTPKE------QTAAVVYLHYQRTLKAYNAVDFDDLILMPVKLFQEH 197
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-RITIVGDDDQSIFSFNGADISG 524
PEV + +++ + ++VDE+QDT+ QY L+++L + T+VGDDDQSI+++ GA
Sbjct: 198 PEVLERWRNRIRYMLVDEYQDTNTSQYLLVKMLVQERAQFTVVGDDDQSIYAWRGARPEN 257
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+ DF + K + L +NYRST I++ A+ LI +N + K + ++ HG I +
Sbjct: 258 LMQLKDDFPSLKVVMLEQNYRSTSRILKCANVLIANNPHVFE-KQLWSEMGHGDPIRVLR 316
Query: 585 CHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI 642
C NED + I +I L + P Y AILYR K+ + + +IP+ +
Sbjct: 317 CKNEDGEAERIALEILTLHLKTQRP-----YADFAILYRGNHQAKLMELKLQHHQIPYRL 371
Query: 643 H-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
G +F+ ++ V+ +++ LR + DD + RV + +E ++ + + R
Sbjct: 372 SGGTSFFARQEVKDVMSYLRLLVNPDDDNAFLRVIN---VPRREIGSTTLEKLGNYAGSR 428
Query: 702 KCSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
S +AA +I G + F +L R + + V + A
Sbjct: 429 DRSMYAAADEIGLGEHLDARF-----------------TERLARFKRWMDGVRKNCAGED 471
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
P L + V+D D + ++ V + + +V L A K D+D +
Sbjct: 472 PIGAL--RSMVMDIDYENWIRQNASSDKVADFRMGNVWFLLD----ALKNILEKDEDGQM 525
Query: 821 CIN--VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
I + K + + ER+ E + + V + T+H SKGLE+ VF+ E +P
Sbjct: 526 TIEDAIAKLVLRDMLERQQEE-----EEGADGVQMMTLHASKGLEFPYVFIMGMEEEILP 580
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEI 935
+ ++EEERRL YV +TRAR+ L Y + L PSRFL E+
Sbjct: 581 HRSSI------EADTIEEERRLAYVGITRARQTLVFTYATRRKQYGELIDCTPSRFLDEL 634
Query: 936 -PHHLREVQAEQSVQDQ 951
P L+ E++ Q+Q
Sbjct: 635 PPEDLQWEGLEEAPQEQ 651
>gi|89091856|ref|ZP_01164811.1| ATP-dependent DNA helicase Rep [Neptuniibacter caesariensis]
gi|89083591|gb|EAR62808.1| ATP-dependent DNA helicase Rep [Oceanospirillum sp. MED92]
Length = 669
Score = 219 bits (559), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 195/724 (26%), Positives = 339/724 (46%), Gaps = 104/724 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA +S PLL++AG GSGK GI NI A+TFT
Sbjct: 1 MSRLNPRQKEA-VEYISGPLLVLAGAGSGKTSVITRKIAYLINQCGIEARNIAAVTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
A+ EM++R+ S++ AK LT++TFH+ L + + + L F I+ Q +A++
Sbjct: 60 ASREMKERVTSLLEGKNAKGLTVATFHNLGLTIIKREYKTLGFKPGFSIFDD-QDTKALL 118
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ + L NE TD + F+ N +S++K E
Sbjct: 119 KDLMLHHNE--------DTDQVD------------FVQN-----QISNWKNEMLTPEE-- 151
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
A + P D + A E Y LR+ NA+D+ DLI V+L + P V
Sbjct: 152 ----ALVQAQLPQ------DILAARAYEVYEQHLRAYNAVDFDDLILVPVRLFTEHPNVL 201
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
+ +Q+ + ++VDE+QDT+ QY L+++L H +T+VGDDDQSI+++ GA +
Sbjct: 202 ERWQNRLRYLLVDEYQDTNLSQYRLVKLLVGHRGALTVVGDDDQSIYAWRGARPENLNQL 261
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
+D+ + K ++L +NYRST I++AA++LI +N + K + ++ G I + NE
Sbjct: 262 EQDYPSLKVVKLEQNYRSTSRILKAANTLIANNPHVYE-KTLWSEMGMGDPIRVIHTKNE 320
Query: 589 DAQCAFIIDKILE-HASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVA 646
D +C I +I + H NG + +AILYR ++ + + ++P+ ++ G +
Sbjct: 321 DGECERIAMEITDLHLRNG----VQFRDMAILYRGNFQARLLEMKLQHFQVPYKLNGGTS 376
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFI 706
F+ + ++ ++ L+ + DD + R+ L +E + + + S R+ S
Sbjct: 377 FFARAEIKDLMGYLKVLVNPDDDNAFLRIIN---LPRREIGPSTLQKLGQYSVDRQISMF 433
Query: 707 SAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLL 766
+ AC G + + + + R+ ++ I + I+A+ + +
Sbjct: 434 N-ACSELG--LEQAMPANAVERLRRFCDWMQHIYRQCHSGDPIAAINEMIRD-------- 482
Query: 767 EQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKE---EGNVDQDKKGCIN 823
+D++G + +++ ++ + + +V FL A E E + D + IN
Sbjct: 483 -----IDYEG--WIAQNSSSEAMAEKRMQNVW-FLMDSLKATLERLQEDDPDAGIQEAIN 534
Query: 824 VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
L ID + +E E D+ N V L T+H SKGLE+ VF+ E +P +
Sbjct: 535 RL-MLIDMLDRQEEE-------DDSNRVQLMTLHASKGLEFPHVFLMGMEEELLPHRNSI 586
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEIPHHLR 940
+ ++EEERRL YV +TRA++ L I + + PSRFL E+P
Sbjct: 587 ------ETDNIEEERRLAYVGITRAKQCLTITLAKQRKQYGEVMDCMPSRFLDELPPEDL 640
Query: 941 EVQA 944
EV+
Sbjct: 641 EVEG 644
>gi|148544658|ref|YP_001272028.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri DSM 20016]
gi|184154011|ref|YP_001842352.1| ATP-dependent DNA helicase [Lactobacillus reuteri JCM 1112]
gi|227363781|ref|ZP_03847888.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri MM2-3]
gi|325682992|ref|ZP_08162508.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri MM4-1A]
gi|148531692|gb|ABQ83691.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri DSM 20016]
gi|183225355|dbj|BAG25872.1| ATP-dependent DNA helicase [Lactobacillus reuteri JCM 1112]
gi|227071138|gb|EEI09454.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri MM2-3]
gi|324977342|gb|EGC14293.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri MM4-1A]
Length = 757
Score = 219 bits (559), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 212/757 (28%), Positives = 346/757 (45%), Gaps = 134/757 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ +ND+Q EA PLL++AG GSGK G+ P NILA+TFT
Sbjct: 8 LEGMNDKQSEAVL-TTEGPLLVMAGAGSGKTRVLTHRVAYLIEENGVLPWNILAITFTNK 66
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G ++G+ +A E+ +STFH+ +++ R EK+ F I +QR
Sbjct: 67 AAREMKERVGKLLGE-SANEIWVSTFHALCVRILRRDIEKIGYNRAFTIADTSEQR---- 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI ++ F R+ L
Sbjct: 122 -----------TLMKRICAELNIDTKKFD-PRSIL------------------------S 145
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+ AK + TP ++ K + + + A + Y L + ALD+ DLI +++LL +
Sbjct: 146 AISNAKNALLTPDDYSKEANSMFENMVARAYKLYQQELEANQALDFDDLIMKTIELLESD 205
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISG 524
E + YQD + I VDE+QDT+ QY L+ +LA + + +VGD DQSI+ + GA+++
Sbjct: 206 QETLEFYQDKFHYIHVDEYQDTNDAQYRLVNLLAQKYQNLCVVGDADQSIYGWRGANMNN 265
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+F D+ K + L +NYRST+ I+ AA+ +I +N+ R + KN+ T+N G KI
Sbjct: 266 ILNFEHDYPQAKTVMLEQNYRSTQTILNAANEVIANNLYRKK-KNLWTENGQGDKISYYR 324
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
NE + FI+ KI E + AILYR ++ + F + IP+ +
Sbjct: 325 AQNEHDEAQFIVSKIKEEQEKHG---YHFNDFAILYRTNAQSRMVEETFLKSSIPYTMVG 381
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI-----DHIDKIS 698
G FY ++ +R I+A L + D + RV KR I +H+ +
Sbjct: 382 GHKFYDRREIRDILAYLTLIVNPADSMSFERVVNT--------PKRGIGLTSVEHLRNFA 433
Query: 699 TIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
+ + AA ++ A R+++ + +++ A +T A
Sbjct: 434 NENGWTLLKAAQNVDTASEITARTRNKIDEFGQLM-----------------ANLTKQAE 476
Query: 759 MVPQKYLLEQRAVVDFDG-GKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQD 817
+ L EQ +++ G K+L+ D L + Q ++ +F S T +E + D D
Sbjct: 477 YLTLTDLTEQ--ILELSGYNKMLSNDRSLEA--QARRENLDEFKSV--TQEYDEQHKDDD 530
Query: 818 KKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
L+ I+++++ + + +VTL T+H +KGLE+ +VF+ E
Sbjct: 531 DPN----LQKIINFLADLALVSDQDNVDEQAPAVTLMTLHAAKGLEFPVVFLVGMEEGIF 586
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLF-------ILYVMMDANWQLLQPSR 930
PL + +EEERRL YV +TRA+KKL+ +LY + N QPSR
Sbjct: 587 PLSRAL-----MEDDELEEERRLAYVGITRAKKKLYLTNAFSRLLYGRIQRN----QPSR 637
Query: 931 FLKEIPHHLREVQAEQSVQDQHENIPEGTAQFTINLP 967
F++EI L Q EN P G + LP
Sbjct: 638 FVEEIDSELL----------QFENSPSGNSIKDSKLP 664
>gi|315641090|ref|ZP_07896169.1| ATP-dependent DNA helicase PcrA [Enterococcus italicus DSM 15952]
gi|315483098|gb|EFU73615.1| ATP-dependent DNA helicase PcrA [Enterococcus italicus DSM 15952]
Length = 754
Score = 219 bits (559), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 208/735 (28%), Positives = 331/735 (45%), Gaps = 119/735 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L+ +N QQ EA + PLL++AG GSGK ++P NILA+TFT
Sbjct: 9 LRGMNPQQKEAVLA-TAGPLLLMAGAGSGKTRVLTHRVAYLIQEKDVNPWNILAITFTNK 67
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+RI ++VG ++++ ISTFHS +++ R EK+ F I Q
Sbjct: 68 AAREMRERIHALVG-PESEDIWISTFHSMCVRILRREVEKIGYNRNFTILDSSDQ----- 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ L++ ++K ++ D D + S+S+ K NK +
Sbjct: 122 --LSLMKR----MLKELNIDPKKYDPR-------------GILASISNAK----NKLQ-- 156
Query: 410 GMDVAKASGKTPAEFRKIGDEI----GAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
TPA K+ + A E Y L +D+ DLI +++L
Sbjct: 157 ----------TPANVSKLANSFIELQVARCYEAYQKELVKNQCMDFDDLIMNTIELFKKH 206
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
P+V YQ+ + I VDE+QDT+ QY+L+++LA + +VGD DQSI+ + GAD+
Sbjct: 207 PDVLAFYQNKFHYIHVDEYQDTNHAQYTLVRMLADRFENLCVVGDADQSIYGWRGADMQN 266
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
F D+ K I L +NYRST+ I+ AA+ +I+ N +R + KN+ TDN G KI+
Sbjct: 267 ILDFEDDYPAAKVILLEQNYRSTKTILTAANQVIKQNKQR-KAKNLWTDNEPGEKIVYFR 325
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
NE + F++ +I++ + YG A+LYR +V + + + IP+ +
Sbjct: 326 GGNEHDEGRFVVSEIVKRVRSKEH---IYGEFAVLYRTNAQSRVVEESLMKANIPYKLVG 382
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
G FY +K +R ++A L D R+ ++ ++ + +
Sbjct: 383 GQKFYSRKEIRDVLAYLNVLANPSDSISLERIINT---PKRGIGPGTVEKLKGFADENGW 439
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
S A ++ + ISG R LE L +T + M+P
Sbjct: 440 SLFEGAQNVNVSTISGKANRE-----------LEQFGLL----------LTDLQQMIPFL 478
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSV-LQYLLADVTDFLST------KFTAAKEEGNVDQ 816
L E V G LNE + +++ + + ++ +FLS ++ + E+ D
Sbjct: 479 SLTELTEEVLKRTG-YLNELKNQKTIESEARIENIQEFLSVTQEFDRRYASQAEDSEADP 537
Query: 817 DKKGC--INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
+K +N L D S E + + VTL T+H +KGLE+ IVF+ E
Sbjct: 538 TEKLAEFLNELALLADVDSFEE----------DSSQVTLMTLHAAKGLEFPIVFLVGMEE 587
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM---MDANWQLLQPSRF 931
PL + +EEERRL YV +TRA K+LF+ M + Q PSRF
Sbjct: 588 NLFPL-----SRALLEDKELEEERRLAYVGITRAEKQLFLTNAMTRNLYGRSQYNHPSRF 642
Query: 932 LKEIPHHLREVQAEQ 946
L+EI L ++ Q
Sbjct: 643 LEEIDDTLLHYESNQ 657
>gi|343510729|ref|ZP_08747940.1| ATP-dependent DNA helicase Rep [Vibrio scophthalmi LMG 19158]
gi|342800944|gb|EGU36438.1| ATP-dependent DNA helicase Rep [Vibrio scophthalmi LMG 19158]
Length = 672
Score = 219 bits (559), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 195/728 (26%), Positives = 345/728 (47%), Gaps = 96/728 (13%)
Query: 254 EAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAASEMRDRI 298
+ A +S P L++AG GSGK G NI A+TFT AA EM++R+
Sbjct: 8 DQAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAREMKERV 67
Query: 299 GSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVRLLENE 358
G +GK AK L +STFH+ L + + + L + F ++ + +
Sbjct: 68 GQTLGKQEAKGLMVSTFHTLGLNIIKREHKHLGLKAGFSLFD---------------DQD 112
Query: 359 KILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDVAKASG 418
++ ++K ++ L DG +R L ++S++K D + +A
Sbjct: 113 QLALLKELTETQL--DGDKDLLR--------QLLSAISNWK--------NDMLTPEQAKA 154
Query: 419 KTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKA 478
E ++ A E Y +R+ NALD+ DLI+ V LL T E +Q+ +
Sbjct: 155 YAQGE----QQQLFAFCFEMYQKQMRAYNALDFDDLIALPVLLLRTNEEARTRWQNRIRY 210
Query: 479 IIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKE 537
++VDE+QDT+ QY L+++L R+T+VGDDDQSI+S+ GA +D+ N K
Sbjct: 211 LLVDEYQDTNTSQYELVRLLVGQRERLTVVGDDDQSIYSWRGAKPQNLVLLGQDYPNLKL 270
Query: 538 IRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIID 597
I+L +NYRST I+ A+ LI +N + K++ ++ G K+ + NED + +
Sbjct: 271 IKLEQNYRSTNRILRCANILIANNPHVYE-KSLFSELPDGEKLKVLLAKNEDHEAERVTG 329
Query: 598 KILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRKKVVRAI 656
+I+ H + +Y AILYR ++ + + + ++P+ + G +F+ + ++ I
Sbjct: 330 EIIAHKF---LNRTNYRDYAILYRGNHQSRLIEKSLMQNRVPYKLSGGTSFFARAEIKDI 386
Query: 657 IAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAK 716
+A L+ + DD + R+ ++E ++ + + +R S A+ F
Sbjct: 387 MAYLKVLVNPDDDNAFLRIVNT---PKREIGPVTLEKLGSYANMRGKSLFEAS---FEMG 440
Query: 717 ISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDG 776
+ L ++ L I+ R ++ AV + V ++ + +L E +
Sbjct: 441 LEQHLTGRGLENLQRFTTWLVKIADQAERGDTVEAVRSLVRDIHYEDWLYETSSSP---- 496
Query: 777 GKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAFIDYISER 835
+ + +V+D S + A EG N DQ++K LK + ++ R
Sbjct: 497 -----------KAAEMRMKNVSDLYS--WIVADLEGDNYDQEEKS----LKEVVQRLTLR 539
Query: 836 ETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVE 895
+ R + ++ ++V L T+H SKGLE+ V++ + E +P H+ +++E +VE
Sbjct: 540 DMME-RNEEDEDSDAVQLMTLHASKGLEFPYVYLLGSEEGILP--HQ--TSIDED--NVE 592
Query: 896 EERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAEQSVQDQH 952
EERRL+YV +TRA+K+L F + +LL+P SRFL E+P E + + Q
Sbjct: 593 EERRLMYVGITRAQKELTFTMCRERRQYGELLKPTQSRFLDELPFDDVEWEQTKKPVTQE 652
Query: 953 ENIPEGTA 960
E + +G A
Sbjct: 653 ERMAKGQA 660
>gi|291613986|ref|YP_003524143.1| UvrD/REP helicase [Sideroxydans lithotrophicus ES-1]
gi|291584098|gb|ADE11756.1| UvrD/REP helicase [Sideroxydans lithotrophicus ES-1]
Length = 662
Score = 219 bits (559), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 186/717 (25%), Positives = 330/717 (46%), Gaps = 120/717 (16%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN Q EA + PLL++AG GSGK G SP NI A+TFT AA+
Sbjct: 5 LNPTQREA-IKYLGGPLLVLAGAGSGKTRVITHKLAYLIEECGYSPRNIAAITFTNKAAN 63
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EMR+R+G I+ AK +TISTFH+ +Q+ R L +F I+ + I E +
Sbjct: 64 EMRERVGKIMNGRDAKGMTISTFHALGMQILREDGPLLGYKKQFSIFDSADTGKIISELL 123
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ ++I + + MS++K
Sbjct: 124 GSPDKQEIRTAQSV----------------------------MSNWK------------- 142
Query: 413 VAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
A+ TP + + + + A + Y LR+ ++D+ DLI V+L T E
Sbjct: 143 ---AAFLTPEQAGSLAENEEQQRLALLYARYQETLRAYQSVDFDDLIRLPVELFKTHEEA 199
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDS 527
Q +Q ++ +++DE+QDT+ QY ++++LA +T+VGDDDQ+I+++ GA + +
Sbjct: 200 HQRWQHRFRYLLIDEYQDTNDCQYQMMKLLAGPRAAVTVVGDDDQAIYAWRGASTANLQN 259
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
+ D+ + I+L +NYRS++ I+++A+ LI++N K + KN+ +++ G + + +
Sbjct: 260 LQNDYPQLRVIKLEQNYRSSQRILQSANHLIKNNTKLFE-KNLWSEHGPGDPVRVFAAKD 318
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVA 646
E+ + ++ ++L H Y AILYR +VF+ R K+P+++ G +
Sbjct: 319 EENEAESVVLRLLAHKFENNTRFSDY---AILYRSNHLSRVFEEQLRTHKVPYSVSGGTS 375
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFI 706
F+ ++ + A LR + DD P +A ++ ++ + + R S
Sbjct: 376 FFDHAEIKDLTAYLR-LIANPDDDP--AFIRAITTPKRGIGNSTLEKLASYAGSRNVSLF 432
Query: 707 SAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRR---EPSISAVITSVANMVPQK 763
AA + S + Q Q +L + I+++ R EP + V+ + + + +
Sbjct: 433 EAAFE------SAMAHQLQPRQHEDLLTFCQFINRMQARAEKEP-CNEVLNDLLSAIDYE 485
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
L FD + +N ++V D +++ K A D+ +
Sbjct: 486 AWL-------FDSHEPRQAENKWKNV-----QDFVGWMNRKSEA-------DEKTMIAMT 526
Query: 824 VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
L A ++ + R+ E ++V+L+T+H +KGLE+ VF+ E +P HE
Sbjct: 527 QLIALLNLLESRDQE---------TDAVSLSTLHAAKGLEFGHVFLIGVEEGILP--HE- 574
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM---MDANWQLLQPSRFLKEIPH 937
+E +EEERRL+YV +TRA++ L I Y + PSRF+ E+P
Sbjct: 575 ---RSEAPEQIEEERRLMYVGITRAQRSLQISYCTRRKRGKEFAGCDPSRFIAELPQ 628
>gi|429888273|ref|ZP_19369760.1| ATP-dependent DNA helicase Rep [Vibrio cholerae PS15]
gi|429224656|gb|EKY30998.1| ATP-dependent DNA helicase Rep [Vibrio cholerae PS15]
Length = 671
Score = 219 bits (559), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 204/735 (27%), Positives = 357/735 (48%), Gaps = 99/735 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ +GK ++ L +STFH+ L + R + L + F ++
Sbjct: 62 EMKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALSLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R +L ++S++K D +
Sbjct: 110 ---DQDQLALLKELTEKQL--DGDKDLLR--------LLLSTISNWK--------NDMLT 148
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
+A E ++ A E Y ++S NALD+ DLI V LL + EV Q +
Sbjct: 149 PPQAKAMAKGE----QQQLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEEVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L+++L R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F + K I+L +NYRST I+ AA+ LI +N Q K + ++ + G K+ + +NED +
Sbjct: 265 FPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQ-KALFSELAEGEKLKVILANNEDHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +I+ H + Y AILYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AERVTAEIIAHKF---LNRTEYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ ++E ++ + + +R S +A+
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PKREIGPATLEKLGSYANMRGKSLFTASF 437
Query: 711 DI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQR 769
++ +SG L R+ L I+ R ++ AV V ++ + +L E
Sbjct: 438 ELGLEQHLSG----RGLDNLRRFTEWLVAIADNAERGNTVEAVRALVRDIRYEDWLYETS 493
Query: 770 AVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAF 828
A + + +V+D S + A EG N DQ +K LK
Sbjct: 494 ASP---------------KAAEMRMKNVSDLYS--WIVADLEGDNPDQQEK----TLKEV 532
Query: 829 IDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVN 888
+ ++ R+ R + +D+ ++V L T+H SKGLE+ V++ A E +P H+ +++
Sbjct: 533 VQRLTLRDMME-RGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILP--HQ--TSID 587
Query: 889 EKGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAE 945
E+ +VEEERRL+YV +TRA+++L F++ +L++P SRFL E+P E + +
Sbjct: 588 EE--NVEEERRLMYVGITRAQRELTFMVCKERRQFGELIKPTQSRFLDELPQEDIEWEVK 645
Query: 946 QSVQDQHENIPEGTA 960
+ Q E + +G A
Sbjct: 646 KKPVTQEERMAKGQA 660
>gi|429729238|ref|ZP_19263914.1| putative ATP-dependent DNA helicase PcrA [Peptostreptococcus
anaerobius VPI 4330]
gi|429145062|gb|EKX88161.1| putative ATP-dependent DNA helicase PcrA [Peptostreptococcus
anaerobius VPI 4330]
Length = 786
Score = 219 bits (559), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 210/731 (28%), Positives = 344/731 (47%), Gaps = 118/731 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L LN Q +A P+LI+AG GSGK I+PSNILA+TFT
Sbjct: 3 LDGLNPAQRQA-VERTEGPVLILAGAGSGKTKVLTTRISYLVEDKNINPSNILAITFTNK 61
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA+EMR+R+ SI+G+ + +++ ISTFHS +++ R K+ F+IY Q I
Sbjct: 62 AANEMRERVESIIGEES-RDMWISTFHSCCVRILRKDINKIGYNRSFVIYDSTDQLTLIK 120
Query: 350 EAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
E ++ L+ N+K KFE
Sbjct: 121 ECIKALDLNDK---------------------------------------------KFEP 135
Query: 409 DGMDVAKASGKT----PAEFRKI--GD---EIGAAILENYNGILRSCNALDYHDLISCSV 459
+ +S K P E+ + GD + A + Y L ALD+ DLI +V
Sbjct: 136 RALIAEISSAKDKLMDPKEYARYVSGDFWLDTVAQVYALYQERLMRNGALDFDDLIFKTV 195
Query: 460 KLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFN 518
+LL + +V Y+ ++ I+VDE+QDTS QY L+++LA H I +VGDDDQSI+ +
Sbjct: 196 ELLKSNEDVLNFYRARFRYIMVDEYQDTSKAQYELVKLLAMGHQNICVVGDDDQSIYGWR 255
Query: 519 GADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGS 578
GADI F KD+ ++L +NYRST+ I++ A+ LI +N++R + K + +D G
Sbjct: 256 GADIRNILEFEKDYNKVFVVKLEQNYRSTQVILDTANHLIANNIERKK-KRLWSDKKDGE 314
Query: 579 KIIIKECHNEDAQCAFIIDKILEHAS--NGPASICSYGSIAILYRRQVSGKVFQTAFRER 636
+ +K NE + +++++I E+AS N P Y A+LYR + + A
Sbjct: 315 LVKVKCLRNEVEEANYVVNEIYENASRTNRP-----YSDYAVLYRANAQARAIEDALNRF 369
Query: 637 KIPFNIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHID 695
+IP+NI+ G FY +K ++ ++A +R + DD +R+ + + + I+ ++
Sbjct: 370 QIPYNIYGGTKFYERKEIKDLLAYIRVIVNPQDDISVKRIIN---IPRRGIGLKTIEKLE 426
Query: 696 KISTIRKCSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+++ K S S D+ + IS K+ G + L I + + S S ++
Sbjct: 427 DRASMMKESLYSVLLDVDNNSDISTKAKK-----GINEFVDLIGIFRSLAESYSPSKMVE 481
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
+ M Y LE +V K +N Q + ++ +F+S + + +
Sbjct: 482 KILEMTG--YTLELEEIVK----KNEKMENGKAQEAQDRIDNLMEFISIAIEYEQSDVFM 535
Query: 815 DQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
++ K L+ F+ IS + + V+L T+H SKGLE+ +VF+ E
Sbjct: 536 EEAKN-----LQNFLANIS--LASDTEGEEEEFVEKVSLMTLHSSKGLEFPVVFMIGMEE 588
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQ 927
P+ + +S+EEERRL YV +TRA ++L++ LY + N +
Sbjct: 589 KIFPIARAISTMEE---SSIEEERRLCYVGITRAMRELYMTQAASRTLYGKTNVNLK--- 642
Query: 928 PSRFLKEIPHH 938
SRFLKE+P
Sbjct: 643 -SRFLKELPEE 652
>gi|261880622|ref|ZP_06007049.1| ATP-dependent DNA helicase [Prevotella bergensis DSM 17361]
gi|270332663|gb|EFA43449.1| ATP-dependent DNA helicase [Prevotella bergensis DSM 17361]
Length = 847
Score = 219 bits (559), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 212/741 (28%), Positives = 342/741 (46%), Gaps = 119/741 (16%)
Query: 243 KYLQSLNDQQLEAA--CGDMSTPLLIVAGPGSGK---------------GISPSNILAMT 285
++L LND Q EA C P L++AG G+GK G+ P NILA+T
Sbjct: 6 EFLAQLNDSQREAVEYC---DGPQLVIAGAGAGKTRVLTYKIAWLLEHHGMKPWNILALT 62
Query: 286 FTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQR 345
FT AA EM+ RIG +VG A+ L + TFHS ++ R A + S+F IY
Sbjct: 63 FTNKAAKEMKQRIGQLVGMERARYLQMGTFHSVFAKILRMEARNVGYGSDFTIYDE---- 118
Query: 346 RAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNK 405
+++ L++N +VK + D Y A++ SM+ +LC ++
Sbjct: 119 ---MDSRSLIKN----IVKAMGLDDKC------YKPAAVHSA-----ISMAKNRLCMPSQ 160
Query: 406 FERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+ DG ++ + E K+ E Y LR NA+D+ DL++ + ++L
Sbjct: 161 YAEDGDQRSRDRHRNMPETYKVYAE--------YQQRLRQANAMDFDDLLTVTYRMLKND 212
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISG 524
+ ++Y ++ ++VDE+QDT+ Q ++ +L RI +VGDD QSI++F GA I
Sbjct: 213 EAIRKKYVGQFQYVLVDEYQDTNFAQQQIVTLLTKEQQRICVVGDDYQSIYAFRGAKIDN 272
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+F K + K +L +NYRST+ IV AA+SL++HN ++ LK+V + N G K+ + E
Sbjct: 273 ILNFNKIYPGAKLFKLEQNYRSTQLIVAAANSLMKHNSRQI-LKDVYSKNEKGEKVTVFE 331
Query: 585 CHNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIP-- 639
++ + A + I +I + S C + AILYR + F+ R+ ++
Sbjct: 332 TVSDKREAAMVCQEIKRIKKEES------CRWSDFAILYRTNAQSRTFEDEMRKPEVGMG 385
Query: 640 --FNIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDK 696
+ IH G++FY++K ++ IIA R + D+ +RR+ + + I
Sbjct: 386 NCYRIHGGLSFYQRKEIKDIIAYFRLVVNPSDEEAFRRIIN---YPARGIGNTTLQKIIA 442
Query: 697 ISTIRKCSFISAACD--IFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+ + S C+ ++ QL + L L L+ E I+ T
Sbjct: 443 AAQQHQVSLWEVVCNPHVY-----------QLDVNKGTLSKLSSFQALI--EGFITKSKT 489
Query: 755 SVANMVPQKYLLEQRAV-VDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
S A + + ++EQ + D K E + R + L++ + DF+ +G
Sbjct: 490 SDALTLGNE-IIEQSGIKADLISDK-SPEGDSRRENVDALVSGIADFV---------QGQ 538
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+ D+ DY+S N + +TL TIH +KGLE+ VFV
Sbjct: 539 REDDQA----EYAGLADYLSTVSLMTDVDSDDGNGDKLTLMTIHSAKGLEFPTVFVVGME 594
Query: 874 ETEIPLVHEFNGAVNEKGT--SVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQ 924
E P ++ GT +EEERRLLYVA+TRA K ++ LY MDA
Sbjct: 595 ENIFP-------SIMSSGTPRELEEERRLLYVAITRAEKHCYLTWSHSRWLYGKMDA--- 644
Query: 925 LLQPSRFLKEIPHHLREVQAE 945
+ PSRFL +I V+ E
Sbjct: 645 FVNPSRFLNDIDPKYMTVRTE 665
>gi|15600489|ref|NP_253983.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa PAO1]
gi|107104399|ref|ZP_01368317.1| hypothetical protein PaerPA_01005475 [Pseudomonas aeruginosa PACS2]
gi|116053444|ref|YP_793770.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa UCBPP-PA14]
gi|218894399|ref|YP_002443269.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa LESB58]
gi|254238009|ref|ZP_04931332.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa C3719]
gi|254243817|ref|ZP_04937139.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa 2192]
gi|296392155|ref|ZP_06881630.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa PAb1]
gi|355643613|ref|ZP_09053435.1| ATP-dependent DNA helicase Rep [Pseudomonas sp. 2_1_26]
gi|416877528|ref|ZP_11919844.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa 152504]
gi|418587280|ref|ZP_13151312.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa MPAO1/P1]
gi|418591168|ref|ZP_13155068.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa MPAO1/P2]
gi|421171246|ref|ZP_15629120.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa ATCC 700888]
gi|421177559|ref|ZP_15635208.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa CI27]
gi|421183385|ref|ZP_15640845.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa E2]
gi|421519868|ref|ZP_15966539.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa PAO579]
gi|9951611|gb|AAG08681.1|AE004942_4 ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa PAO1]
gi|115588665|gb|ABJ14680.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa UCBPP-PA14]
gi|126169940|gb|EAZ55451.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa C3719]
gi|126197195|gb|EAZ61258.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa 2192]
gi|218774628|emb|CAW30445.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa LESB58]
gi|334839524|gb|EGM18206.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa 152504]
gi|354829563|gb|EHF13627.1| ATP-dependent DNA helicase Rep [Pseudomonas sp. 2_1_26]
gi|375042033|gb|EHS34700.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa MPAO1/P1]
gi|375049949|gb|EHS42436.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa MPAO1/P2]
gi|404345787|gb|EJZ72139.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa PAO579]
gi|404520750|gb|EKA31409.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa ATCC 700888]
gi|404529248|gb|EKA39296.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa CI27]
gi|404540293|gb|EKA49706.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa E2]
Length = 669
Score = 219 bits (559), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 194/721 (26%), Positives = 333/721 (46%), Gaps = 115/721 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+A+TFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAYLVQQCGIRAQYIVAVTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ K LT+STFH+ L + R E+L F I+ + +
Sbjct: 60 AAREMKERVGTLLRGGEGKGLTVSTFHNLGLNIIRKEHERLGYKPGFSIFDESDIKALLT 119
Query: 350 EAVRLLENEKILVVKRISTDMLTTDG------HFGYMRASLFMMNAMLFFSMSSFKLCQY 403
+ ++ K S D DG + G + L + L
Sbjct: 120 D----------IMQKEYSGD----DGVDEIKNYIGAWKNDLILPEEAL------------ 153
Query: 404 NKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
+ P E + A + +Y LR+ NA+D+ DLI VKL
Sbjct: 154 ------------EKARNPKE------QTAAIVYLHYQRTLRAYNAVDFDDLILQPVKLFQ 195
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-RITIVGDDDQSIFSFNGADI 522
P+V Q++Q+ + ++VDE+QDT+A QY L+++L + T+VGDDDQSI+++ GA
Sbjct: 196 EHPDVLQKWQNKVRYMLVDEYQDTNASQYLLVKLLVKDRAQFTVVGDDDQSIYAWRGARP 255
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
++DF + K + L +NYRST I++ A+ LI +N + K + ++ HG I +
Sbjct: 256 ENLMQLKEDFPSLKVVMLEQNYRSTSRILKCANVLIANNPHVFE-KQLWSEMGHGDPIRV 314
Query: 583 KECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
C NEDA+ I +I L + P Y AILYR K+ + + +IP+
Sbjct: 315 IRCRNEDAEAERIAMEILTLHLRTERP-----YSEFAILYRGNHQAKLMELKLQHHQIPY 369
Query: 641 NIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIST 699
+ G +F+ ++ V+ +++ R + DD + RV + +E ++ + +T
Sbjct: 370 RLSGGTSFFGRQEVKDLMSYFRLLVNPDDDNAFLRVIN---VPRREIGSATLEKLGNYAT 426
Query: 700 IRKCSFISAACDIFG-AKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
RK S + AACD G A+ + +L + ++ + +RR+ + + I + +
Sbjct: 427 QRKIS-MYAACDEMGLAEHLDSRFHERLQRFKRWM-------DGIRRQCAENEPIAVLRS 478
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
M V+D D L ++ V ++ +++V F + +++D+
Sbjct: 479 M-----------VMDIDYENWLRQNASSDKVAEFRMSNVW------FLIEALKNTLERDE 521
Query: 819 KGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
+G + + +A I + R+ + + + V + T+H SKGLE+ VF+ E +P
Sbjct: 522 EGDMTIEQA-IAKLVLRDMLERQQEEEEGAEGVQMMTLHASKGLEFPYVFIMGMEEEILP 580
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEI 935
+ +VEEERRL YV +TRAR+ L + + + + PSRFL E+
Sbjct: 581 HRSSI------EADTVEEERRLAYVGITRARQNLAMTFAAKRKQYGEIIDCSPSRFLDEL 634
Query: 936 P 936
P
Sbjct: 635 P 635
>gi|375361362|ref|YP_005129401.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|371567356|emb|CCF04206.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
Length = 739
Score = 219 bits (559), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 220/757 (29%), Positives = 334/757 (44%), Gaps = 146/757 (19%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTF 286
++ L LN Q EA PLL++AG GSGK ++P NILA+TF
Sbjct: 6 NQLLSGLNPVQQEA-VKTTDGPLLLMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITF 64
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR 346
T AA EM++R+ SI+G A E+ ISTFHS +++ R +++ F I Q
Sbjct: 65 TNKAAREMKERVESILGPG-ADEIWISTFHSMCVRILRRDIDRIGINRNFSILDTADQLS 123
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
I + IL + I G S+SS
Sbjct: 124 VI---------KGILKERNIDPKKFDPRSILG---------------SISS--------- 150
Query: 407 ERDGMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLL 462
AK P EF K D++ + + +Y L +LD+ DLI ++KL
Sbjct: 151 -------AKNELIEPEEFAKTAGGYYDQVTSDVYTDYQKKLLKNQSLDFDDLIMTTIKLF 203
Query: 463 STFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGAD 521
PEV + YQ ++ I VDE+QDT+ QY L++ LA+ I +VGD DQSI+ + GAD
Sbjct: 204 ERVPEVLEFYQRKFQYIHVDEYQDTNRAQYLLVKQLAARLENICVVGDSDQSIYRWRGAD 263
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII 581
I+ SF KD+ + I L +NYRST+ I++AA+ +I++N R + KN+ T+N G K+
Sbjct: 264 IANILSFEKDYPSANVILLEQNYRSTKRILQAANEVIKNNSNR-KPKNLWTENDEGIKLS 322
Query: 582 IKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN 641
NE + F+ KI E S+G + IAILYR +V + + + +N
Sbjct: 323 YYSGDNEFGEGQFVAGKIYELHSSGRRKLS---DIAILYRTNAQSRVIEETLLKSGLNYN 379
Query: 642 I-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFK------AFLLLEKEEKKRVIDHI 694
I G FY +K ++ I+A LR DD + R+ LEK ++ +
Sbjct: 380 IVGGTKFYDRKEIKDILAYLRLVSNPDDDISFTRIVNVPKRGVGATSLEKIASYAAMNGM 439
Query: 695 DKISTIRKCSFISA------ACDIFGAKISGTFKRSQLTQGRKVL----LTLEMISKLVR 744
I++ FI A D FGA I LT + L LT E++ K
Sbjct: 440 SMFQAIKQVDFIGVSAKAANALDGFGAMI------ENLTNMQDYLSITELTEEILEKTEY 493
Query: 745 REPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTK 804
RE + +K + Q + + D + ++ + +S + L+A +TD
Sbjct: 494 RE-----------MLKAEKSIEAQSRLENIDEFLSVTKNFEQKSEDKSLVAFLTDL---- 538
Query: 805 FTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEW 864
L A ID + ++E E +++VTL T+H +KGLE+
Sbjct: 539 -------------------ALIADIDQLDQKEEE------SGGKDAVTLMTLHAAKGLEF 573
Query: 865 DIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD---A 921
+VF+ E P +EEERRL YV +TRA ++L++ M
Sbjct: 574 PVVFLMGMEEGVFPHSRSLMEE-----AEMEEERRLAYVGITRAEEELYLTNAKMRTLFG 628
Query: 922 NWQLLQPSRFLKEIPHHLRE---------VQAEQSVQ 949
+ SRF++EIP L E +Q E+ VQ
Sbjct: 629 RTNMNPESRFIREIPGDLLENLNEKKTPRMQPERKVQ 665
>gi|385263783|ref|ZP_10041870.1| ATP-dependent DNA helicase PcrA [Bacillus sp. 5B6]
gi|385148279|gb|EIF12216.1| ATP-dependent DNA helicase PcrA [Bacillus sp. 5B6]
Length = 739
Score = 219 bits (559), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 218/762 (28%), Positives = 334/762 (43%), Gaps = 142/762 (18%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTF 286
++ L LN Q EA PLL++AG GSGK ++P NILA+TF
Sbjct: 6 NQLLSGLNPVQQEA-VKTTDGPLLLMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITF 64
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR 346
T AA EM++R+ SI+G A E+ ISTFHS +++ R +++ F I Q
Sbjct: 65 TNKAAREMKERVESILGPG-ADEIWISTFHSMCVRILRRDIDRIGINRNFSILDTADQLS 123
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
I + IL + I G S+SS
Sbjct: 124 VI---------KGILKERNIDPKKFDPRSILG---------------SISS--------- 150
Query: 407 ERDGMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLL 462
AK P EF K D++ + + +Y L +LD+ DLI ++KL
Sbjct: 151 -------AKNELIEPEEFAKTAGGYYDQVTSDVYTDYQKKLLKNQSLDFDDLIMTTIKLF 203
Query: 463 STFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGAD 521
PEV + YQ ++ I VDE+QDT+ QY L++ LA+ I +VGD DQSI+ + GAD
Sbjct: 204 ERVPEVLEFYQRKFQYIHVDEYQDTNRAQYLLVKQLAARLENICVVGDSDQSIYRWRGAD 263
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII 581
I+ SF KD+ + I L +NYRST+ I++AA+ +I++N R + KN+ T+N G K+
Sbjct: 264 IANILSFEKDYPSANVILLEQNYRSTKRILQAANEVIKNNSNR-KPKNLWTENDEGIKLS 322
Query: 582 IKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN 641
NE + F+ KI E S+G + IAILYR +V + + + +N
Sbjct: 323 YYSGDNEFGEGQFVAGKIYELHSSGRRKLS---DIAILYRTNAQSRVIEETLLKSGLNYN 379
Query: 642 I-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFK------AFLLLEKEEKKRVIDHI 694
I G FY +K ++ I+A LR DD + R+ LEK ++ +
Sbjct: 380 IVGGTKFYDRKEIKDILAYLRLVSNPDDDISFTRIVNVPKRGVGATSLEKIASYAAMNGM 439
Query: 695 DKISTIRKCSFISA------ACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPS 748
I++ FI A D FGA I LT + L E+ +++ +
Sbjct: 440 SMFQAIKQVDFIGVSAKAANALDGFGAMI------ENLTNMQDYLSITELTEEILEK--- 490
Query: 749 ISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAA 808
T M+ + +E Q L ++ +FLS T
Sbjct: 491 -----TEYREMLKAEKSIEA----------------------QSRLENIDEFLSV--TKN 521
Query: 809 KEEGNVDQDKKGCIN--VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDI 866
E+ + D+ + L A ID + ++E E +++VTL T+H +KGLE+ +
Sbjct: 522 FEQKSEDKSLVAFLTDLALIADIDQLDQKEEE------SGGKDAVTLMTLHAAKGLEFPV 575
Query: 867 VFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD---ANW 923
VF+ E P +EEERRL YV +TRA ++L++ M
Sbjct: 576 VFLMGMEEGVFPHSRSLMEE-----AEMEEERRLAYVGITRAEEELYLTNAKMRTLFGRT 630
Query: 924 QLLQPSRFLKEIPHHLRE---------VQAEQSVQDQHENIP 956
+ SRF++EIP L E +Q + VQ + +P
Sbjct: 631 NMNPESRFIREIPGDLLENLNEKKTPRMQPGRKVQPKRGPVP 672
>gi|312793467|ref|YP_004026390.1| uvrd/rep helicase [Caldicellulosiruptor kristjanssonii 177R1B]
gi|312180607|gb|ADQ40777.1| UvrD/REP helicase [Caldicellulosiruptor kristjanssonii 177R1B]
Length = 714
Score = 219 bits (559), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 202/735 (27%), Positives = 342/735 (46%), Gaps = 133/735 (18%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GIS-PSNILAMTFT 287
++L+ LN+QQ EA PLL++AG GSGK G++ P NILA+TFT
Sbjct: 2 EWLKELNEQQKEAVLS-TEGPLLVLAGAGSGKTRVITYRIAYILNMGLANPGNILAITFT 60
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM++RI +V + E+ +STFH+ ++ R A + ++ F+I+ +++
Sbjct: 61 NKAADEMKERIKRLVSTQSFSEMWVSTFHAACARILRMEAHNIGFSNNFVIFDTQDRQQL 120
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
+ E R++ D D + + S F N ++
Sbjct: 121 LKECF-----------DRLNIDPEKLDIRYVSRQISNFK-NQLI---------------- 152
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIG--AAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
P++ + GD G + + YN +L+ NA D+ DL+ +V L T
Sbjct: 153 ------------GPSDVYRYGDVDGRVVEVYKLYNKLLKEYNAFDFDDLLYYTVVLFETN 200
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISG 524
P++ ++YQ+ +K I+VDE+QDT+ Q+ + +L+ H + +VGDDDQSI+SF GA+I
Sbjct: 201 PDILEKYQNKFKYILVDEYQDTNHAQFYFIYLLSQKHRNVCVVGDDDQSIYSFRGANIKN 260
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
F K F + K I+L +NYRST+ I+ AA+ +I+HN R + K + TDN+ G KI +
Sbjct: 261 ILEFEKVFSDAKVIKLEKNYRSTKTILSAANEVIKHNYYR-KSKRLWTDNTEGEKIFLYS 319
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG 644
+E + F+ + +G S I +LYR F+ A +P+ + G
Sbjct: 320 AFDEVNEAEFVASSVKNLIESG----FSPSEIGVLYRTNAQSVNFENALSAYSVPYKVVG 375
Query: 645 -VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
+ FY +K ++ IIA LR DD R+ +R I + STI K
Sbjct: 376 ALRFYERKEIKDIIAYLRLITNPHDDLSLFRIINV--------PRRGIGN----STIEKI 423
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
+S ++ + +R++ +K +++ I+ + ++ +
Sbjct: 424 KALSEEYNVSAYTV--LLERAKFDFDKKTY-------------EKLNSFISLIEDLKAEA 468
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEE-----GNVDQ-- 816
ED + S ++ L+ D T +L + ++ EE N++Q
Sbjct: 469 ------------------EDLSVSSAIK-LVLDKTGYLESLLSSKSEEEFQRAKNIEQLI 509
Query: 817 ------DKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVA 870
+++ L+ F++ I+ +E TQ+ E V+L T+H +KGLE+++VF+
Sbjct: 510 SAAAIFEEENEEPTLQNFLNSIT-LSSEEEDTQK---EEKVSLMTVHAAKGLEFEVVFLT 565
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQ 927
E PLV +EEERRL YVA+TRA+K L + Y + + Q
Sbjct: 566 GLEEGLFPLVRAEEPVE--AEKELEEERRLCYVAITRAKKLLVLTYANNRRVFGRFSSRQ 623
Query: 928 PSRFLKEIPHHLREV 942
S F++EIP +V
Sbjct: 624 KSCFIEEIPQKYIQV 638
>gi|404494641|ref|YP_006718747.1| ATP-dependent DNA helicase Rep [Pelobacter carbinolicus DSM 2380]
gi|77546634|gb|ABA90196.1| ATP-dependent DNA helicase Rep [Pelobacter carbinolicus DSM 2380]
Length = 678
Score = 219 bits (559), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 145/440 (32%), Positives = 228/440 (51%), Gaps = 64/440 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +LN+QQ AA PLL++AG GSGK G+ ILA+TFT
Sbjct: 3 LSALNEQQ-RAAVRHTEGPLLLLAGAGSGKTRVITSRIAFLLQDRGVPSQAILAVTFTNK 61
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+ IVG+ AK + ISTFH+ +++ + E+L F IYG Q R I
Sbjct: 62 AAREMRERVEGIVGRKQAKGMVISTFHALCVRILKEDIEQLGYKKNFSIYGGADQLRLIR 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +++ ++T + D + S + +L ++F
Sbjct: 122 D-----------LLQEVNTGLRKFDAD-----------RVLWLISDAKNRLIPPDRF--- 156
Query: 410 GMDVAKASGKTPAEFRKIGDEIG---AAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
P GDE G A I Y L++ NA+D+ DLI +V+LL P
Sbjct: 157 ----------APTH----GDEYGPVVATIYPRYQRALKAFNAVDFDDLIMLTVRLLQDKP 202
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGF 525
V ++Y+ ++ ++VDE+QDT+A QY LL++LA H + +VGDDDQSI+ + GAD+
Sbjct: 203 AVLEKYRQRFRYLMVDEYQDTNAAQYRLLRLLAEGHRNLCVVGDDDQSIYGWRGADLGNI 262
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
F KDF IRL +NYRST I+ AA+++I++N+KR ++K + T + G KI C
Sbjct: 263 LDFEKDFPGTMVIRLEQNYRSTGNILTAANAVIRNNLKR-KIKALWTADGPGDKIDYLLC 321
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHG 644
+++ + ++++I+ A A + SY AIL+R V + F+ R + +P+ I G
Sbjct: 322 EDDEDEARVVVERIM--AERFKARL-SYRDFAILFRTNVQSRAFEEQLRYQDVPYVLIGG 378
Query: 645 VAFYRKKVVRAIIAMLRTTL 664
F+ +K V+ ++A R L
Sbjct: 379 QQFFDRKEVKDVLAYFRVLL 398
Score = 63.9 bits (154), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 68/121 (56%), Gaps = 11/121 (9%)
Query: 825 LKAFIDYISERETEHFRTQRHD---NENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
L+ F+D +S + + Q D ++V L ++H SKGLE+ VF+ + +P H
Sbjct: 529 LEGFLDKVSLLDRDEPPRQDKDAKLQRDAVVLMSLHSSKGLEFPCVFLVGMEDELLP--H 586
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSRFLKEIPHH 938
+ + N +++EEERRL YV +TRA+KKL +L + ++Q PS FL+EIP
Sbjct: 587 KKSKGAN---SNIEEERRLCYVGITRAQKKLTLLGAARRKKFGVMQLRSPSCFLEEIPDE 643
Query: 939 L 939
+
Sbjct: 644 V 644
>gi|192360051|ref|YP_001984019.1| DNA-dependent helicase II [Cellvibrio japonicus Ueda107]
gi|190686216|gb|ACE83894.1| DNA helicase II [Cellvibrio japonicus Ueda107]
Length = 769
Score = 219 bits (559), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 196/732 (26%), Positives = 324/732 (44%), Gaps = 118/732 (16%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTF 286
S L +LND Q EA L I+AG GSGK +SP +I+A+TF
Sbjct: 32 SHLLDNLNDAQREAVSAPAGNQL-ILAGAGSGKTRVLVHRIAWLIQVEQVSPYSIMAVTF 90
Query: 287 TTAAASEMRDRIGSIVGKA---------TAKELTISTFHSFSLQLCRSHAEKLERTSEFL 337
T AA EMR R+ + G++ ++ + + TFH + +L ++H + F
Sbjct: 91 TNKAAREMRARLDELFGQSLTDSGSQHINSRAMWVGTFHGLAHRLLKAHWQDAGLPQNFQ 150
Query: 338 IYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSS 397
I L ++++ ++KR+ + D + + R +++ +N
Sbjct: 151 I---------------LDSDDQLRMIKRVYQQLNLDDSKWPH-RQAIWYINGQ------- 187
Query: 398 FKLCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSC---NALDYHDL 454
K G P + D +L Y C +D+ +L
Sbjct: 188 -----------------KDEGLRPQHIEETADPFVRTMLSIYRAYEEDCARAGVVDFAEL 230
Query: 455 ISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQS 513
+ + +L P + + Y+ + I+VDEFQDT+++QY+ L++LA + +T VGDDDQS
Sbjct: 231 LLRAHELWLNKPHILEHYRQRFPFILVDEFQDTNSVQYAWLRVLAGKESVVTAVGDDDQS 290
Query: 514 IFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTD 573
I+ + GA I F +DF N + IRL +NYRST I+ AA+++I HN R K++ T
Sbjct: 291 IYGWRGAKIENIRQFSEDFPNTQLIRLEQNYRSTGNILHAANAVIAHNYGRLG-KDLWTQ 349
Query: 574 NSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
+ G I + NE + FI+++I G A + AILYR +V + A
Sbjct: 350 GAKGEPISLYAAFNEQDEARFIVERIQSWVKQGKAK----NTCAILYRSNAQSRVLEEAL 405
Query: 634 RERKIPFNIHGVA-FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID 692
IP+ I+G FY + ++ IA +R DD + RV + + +D
Sbjct: 406 LREAIPYRIYGGQRFYDRLEIKNAIAYMRLISNRHDDAAFERVINT---PTRGIGGKTVD 462
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSI--- 749
I + + CS AC+ A+ + + + + Q L ++ +L R I
Sbjct: 463 DIRLFAREQGCSLWQ-ACEQIIAQKALSARAANAVQ-----TFLALVQQLARAANDINIH 516
Query: 750 --SAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTA 807
+ + +A +V +E ++DF + + LQ L+ F +
Sbjct: 517 GDTPSLDEIARLV-----IEDTGLLDFHQSEKGEKGQARGENLQELINACRAFDA----- 566
Query: 808 AKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIV 867
+D + + L+ F+D + E TQ + E++V L T+H +KGLE+ +V
Sbjct: 567 --------EDAEEGVTPLQQFLDTAALDAGE---TQADEFEDAVQLMTLHSAKGLEFPLV 615
Query: 868 FVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQ 924
F+A E P H+ + + +EEERRL YV +TRA +KL I Y M +
Sbjct: 616 FLAGVEEGLFP--HKMSA---DDPDRLEEERRLAYVGITRAMEKLIITYAETRRMYGSET 670
Query: 925 LLQPSRFLKEIP 936
SRF+KEIP
Sbjct: 671 FNSVSRFVKEIP 682
>gi|52079148|ref|YP_077939.1| ATP-dependent DNA helicase [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|404488015|ref|YP_006712121.1| ATP-dependent DNA helicase PcrA [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|423681112|ref|ZP_17655951.1| ATP-dependent DNA helicase [Bacillus licheniformis WX-02]
gi|52002359|gb|AAU22301.1| ATP-dependent DNA helicase [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52347017|gb|AAU39651.1| ATP-dependent DNA helicase PcrA [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|383442218|gb|EID49927.1| ATP-dependent DNA helicase [Bacillus licheniformis WX-02]
Length = 739
Score = 219 bits (559), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 213/728 (29%), Positives = 328/728 (45%), Gaps = 123/728 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L LN Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 9 LSGLNKMQQEA-VKTTDGPLLIMAGAGSGKTRVLTHRIAYLMAEKRVAPWNILAITFTNK 67
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ SI+G A ++ ISTFHS +++ R +++ F I Q I
Sbjct: 68 AAREMKERVESILGPG-ADDIWISTFHSMCVRILRRDIDRIGINRNFSILDTSDQLSVI- 125
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ IL + I G S+SS
Sbjct: 126 --------KGILKERNIDPKKFDPRSILG---------------SISS------------ 150
Query: 410 GMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
AK P E+ K +++ + + ++Y LR +LD+ DLI ++ L
Sbjct: 151 ----AKNELIAPEEYEKTAGGFFEQVVSDVYKDYQKKLRKNQSLDFDDLIMTTIVLFDRV 206
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV + YQ ++ I VDE+QDT+ QY L++ +A I +VGD DQSI+ + GADI+
Sbjct: 207 PEVLEYYQRKFQYIHVDEYQDTNRAQYLLVKKMAQRFQNICVVGDSDQSIYRWRGADIAN 266
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF KD+ N I L +NYRST+ I+ AA+ +IQ+N R + KN+ T+N G+KI
Sbjct: 267 ILSFEKDYPNASVILLEQNYRSTKRILNAANEVIQNNSNR-KPKNLWTENDEGAKISYFR 325
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-H 643
NE + F+ KI E +G S+ IAILYR +V + + I +NI
Sbjct: 326 GDNEFGEGQFVAGKIRELVGSGKR---SFSDIAILYRTNAQSRVIEETLMKANINYNIVG 382
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID--HIDKISTIR 701
G FY +K ++ I+A LR DD + R+ KR + +DK
Sbjct: 383 GTKFYDRKEIKDILAYLRLVANPDDDISFARIVNV--------PKRGVGATSVDK----- 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
I+A D+ G + + L ++ I R ++ ++ N+
Sbjct: 430 ----IAAYADMNGMSLF------------EALGQVDFIGLSARAANALDEFRQTIENLTN 473
Query: 762 -QKYL----LEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQ 816
Q+YL L + + + ++L + L + Q L ++ +FLS T E+ + D+
Sbjct: 474 MQEYLSVTELTEEILEKTEYREMLKAEKSLEA--QSRLENIDEFLSV--TKNFEQQSEDK 529
Query: 817 DKKGCIN--VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
+ L A ID + ++E E N+++V L T+H +KGLE+ +VF+ E
Sbjct: 530 SLVAFLTDLALIADIDQLDQKEEE------TGNQDAVILMTLHAAKGLEFPVVFLMGLEE 583
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD---ANWQLLQPSRF 931
P +EEERRL YV +TRA ++L++ M + SRF
Sbjct: 584 GVFPHSRSLMEE-----AEMEEERRLAYVGITRAEEELYLTNARMRTLFGRTNMNPESRF 638
Query: 932 LKEIPHHL 939
+ EIP L
Sbjct: 639 IAEIPEEL 646
>gi|442805925|ref|YP_007374074.1| ATP-dependent DNA helicase PcrA [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442741775|gb|AGC69464.1| ATP-dependent DNA helicase PcrA [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 732
Score = 219 bits (558), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 145/449 (32%), Positives = 227/449 (50%), Gaps = 60/449 (13%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+Q LN QQ EA PLL++AG GSGK G+SP NILA+TFT
Sbjct: 4 IQGLNPQQKEAVL-HTEGPLLVLAGAGSGKTRVLTHRIAYLIEEKGVSPYNILAITFTNK 62
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ ++G A ++ TFHS +++ R E++ F+IY Q +
Sbjct: 63 AAGEMKERLEKLIG-TKALDVWAGTFHSCCVRILRREIERIGFGRNFVIYDTSDQETLMK 121
Query: 350 EAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFER 408
+ + L+ NEK+ K + ++ G + L + S F+L +
Sbjct: 122 DCISQLQYNEKLFPPKMVLAEI-------GRAKDELIDPEKYAIMAGSDFRLSKI----- 169
Query: 409 DGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
A + E Y L++ NALD+ D+I ++K+ FPEV
Sbjct: 170 ------------------------ARLYELYQKKLKANNALDFDDIIMYTLKIFDDFPEV 205
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDS 527
+ YQ+ +K I+VDE+QDT+ QY L+ +LA H + +VGDDDQSI+ + GA+I
Sbjct: 206 LEYYQNKFKYILVDEYQDTNTAQYVLVSMLAQKHRNVCVVGDDDQSIYGWRGANIRNILE 265
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
F KDF + I+L +NYRST I+ AA+++I++N R + K + T+N G K+ + E +
Sbjct: 266 FEKDFKGCRVIKLEQNYRSTANILNAANNVIKNNFGR-KPKTLWTENGEGDKVRVYEALD 324
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVA 646
E + F+ ++I G SY A+LYR +VF+ AF + +P+ I G
Sbjct: 325 EKEEAYFVANQIKSEVRKGRR---SYRDFAVLYRINAQSRVFEDAFMKNGVPYKIIGGHK 381
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRV 675
FY +K ++ IIA L+ DD +R+
Sbjct: 382 FYDRKEIKDIIAYLKVIQNPHDDISLKRI 410
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 8/98 (8%)
Query: 845 HDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVA 904
++ ++ V L T+H +KGLE+ +VF+ E P + F + +EEERRL YV
Sbjct: 546 NEEDDRVVLMTMHSAKGLEFPVVFLTGMEEGLFPGMRSFGSE-----SEMEEERRLCYVG 600
Query: 905 MTRARKKLFILYV---MMDANWQLLQPSRFLKEIPHHL 939
+TRA++ L++ Y M+ N +PSRF+ EIP L
Sbjct: 601 ITRAKENLYLTYAKTRMLFGNTTYTRPSRFIDEIPPEL 638
>gi|289677648|ref|ZP_06498538.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. syringae
FF5]
gi|422620700|ref|ZP_16689375.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. japonica
str. M301072]
gi|440719926|ref|ZP_20900349.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae BRIP34876]
gi|440728068|ref|ZP_20908288.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae BRIP34881]
gi|443640800|ref|ZP_21124650.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. syringae
B64]
gi|330901055|gb|EGH32474.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. japonica
str. M301072]
gi|440362399|gb|ELP99596.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae BRIP34881]
gi|440367166|gb|ELQ04235.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae BRIP34876]
gi|443280817|gb|ELS39822.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. syringae
B64]
Length = 669
Score = 219 bits (558), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 191/726 (26%), Positives = 325/726 (44%), Gaps = 125/726 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+AMTFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ + + LT+STFH+ L + R +L F I+
Sbjct: 60 AAREMKERVGTLLRGSEGRGLTVSTFHNLGLNIIRKEHTRLGYKPGFSIFDETD------ 113
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
VK + TD++ Q D
Sbjct: 114 -------------VKALMTDIM------------------------------QKEYSGDD 130
Query: 410 GMDVAK---ASGKT----PAEF----RKIGDEIGAAILENYNGILRSCNALDYHDLISCS 458
G+D K S K PAE R ++ A + +Y L++ NA+D+ DLI
Sbjct: 131 GVDEIKNMIGSWKNDLILPAEALENARNPKEQTAAIVYTHYQRTLKAYNAVDFDDLILLP 190
Query: 459 VKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSF 517
VKL ++ +++Q+ + ++VDE+QDT+A QY L+++L + ++ T+VGDDDQSI+++
Sbjct: 191 VKLFQEHADILEKWQNKVRYLLVDEYQDTNASQYLLVKLLIGTRHQFTVVGDDDQSIYAW 250
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GA + D+ + K + L +NYRST I+ A+ LI +N + K + ++ HG
Sbjct: 251 RGARPENLMLLKDDYPSLKVVMLEQNYRSTSRILRCANVLISNNPHAFE-KQLWSEMGHG 309
Query: 578 SKIIIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
+I + C NEDA+ + +I L ++ P Y AILYR K+ + +
Sbjct: 310 DEIRVIRCRNEDAEAERVAMEILTLHLRTDRP-----YSDFAILYRGNYQAKLIELKLQH 364
Query: 636 RKIPFNIHGV-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
++P+ + G +F+ ++ V+ ++A R + DD + RV + +E ++ +
Sbjct: 365 HQVPYRLSGGNSFFGRQEVKDLMAYFRLLVNPDDDNAFLRVIN---VPRREIGSTTLEKL 421
Query: 695 DKISTIRKCSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI 753
+T RK S +A +I G + F +L R + + V
Sbjct: 422 GNYATERKVSMYAATDEIGLGEHLDSRF-----------------TDRLQRFKRWMDGVR 464
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
A P L + V+D D L +++ Y +++V F +
Sbjct: 465 QQCAQNDPIAAL--RSMVMDIDYENWLRQNSSSEKAADYRMSNVW------FLIEALKNT 516
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+++D++G + + +A I + R+ + + D V + T+H SKGLE+ VF+
Sbjct: 517 LEKDEEGGMTIEEA-IGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGME 575
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSR 930
E +P + ++EEERRL YV +TRAR+ L + + + PSR
Sbjct: 576 EEILPHRSSI------EADTIEEERRLAYVGITRARQTLAFTFAAKRKQYGEIIDCAPSR 629
Query: 931 FLKEIP 936
FL E+P
Sbjct: 630 FLDELP 635
>gi|332298133|ref|YP_004440055.1| UvrD/REP helicase [Treponema brennaborense DSM 12168]
gi|332181236|gb|AEE16924.1| UvrD/REP helicase [Treponema brennaborense DSM 12168]
Length = 710
Score = 219 bits (558), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 157/489 (32%), Positives = 232/489 (47%), Gaps = 73/489 (14%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASE 293
LN +Q EA LLI+AG GSGK GI S ILA+TFT AA E
Sbjct: 9 LNQEQYEAVT-TTEGALLIIAGAGSGKTRVITFRIAHMLDKGIPQSQILALTFTNKAARE 67
Query: 294 MRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVR 353
M +R+ GK + LT+STFH+F +++ R E+L F IY + + I E R
Sbjct: 68 MEERVKEHTGKKL-QNLTVSTFHAFGVKILRQDIEQLGWRPNFSIYDETDRNQLIKETGR 126
Query: 354 LLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDV 413
L T D Y SLF S+ K+ +++ D
Sbjct: 127 ELG--------------FTADALDVYKVGSLF----------SNIKIGRWS------WDS 156
Query: 414 AKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQ 473
+ + + ++R + E Y L+ NA+D+ DLI+ +KL P+V +Y+
Sbjct: 157 SDSKTRGNDQYR--------TLYEEYQSGLKLYNAVDFDDLITLPIKLFKEHPDVLAKYR 208
Query: 474 DSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDSFRKDFL 533
+ +K I+VDEFQDTS QY + +LA N + +VGDDDQSI+S+ GA+ F +DF
Sbjct: 209 ERYKYIMVDEFQDTSIQQYEFMHLLADKN-VAVVGDDDQSIYSWRGANYENIRMFERDFP 267
Query: 534 NYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCA 593
+ KEIRL +NYRST I+ AA+ +I HN R K++ + N G I I NE A+
Sbjct: 268 DVKEIRLEQNYRSTETILAAANGVISHNTNRKD-KSLWSGNGSGKPIEIYLPENEAAEAD 326
Query: 594 FIIDKILEHASNGPASIC-----SYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAF 647
FI + I IC Y +L R + + AF E IP+ + G +F
Sbjct: 327 FIAESI--------QGICMAEKRKYDDFGVLMRANTQSRALEEAFLEANIPYTMSGGTSF 378
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
+++K ++ +I+ LR DD R+ + ++ I+ I+ ++ RKCS
Sbjct: 379 FQRKEIKDVISYLRVCANHDDDINLLRIINT---PRRGIGRKTIEDINAVANERKCSLWD 435
Query: 708 AACDIFGAK 716
A I G K
Sbjct: 436 AINAILGTK 444
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 58/103 (56%), Gaps = 7/103 (6%)
Query: 851 VTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARK 910
V L TIH SKGLE+ +VF+A A + IP ++ + +VEEERRL YVA+TRAR
Sbjct: 595 VNLMTIHASKGLEFPVVFIAGAEDGIIPHAR----SIEDGEENVEEERRLFYVAITRARD 650
Query: 911 KLFILYVMMDANWQLL---QPSRFLKEIPHHLREVQAEQSVQD 950
KLFI Q + PSRFL EIP HL E + D
Sbjct: 651 KLFISSCRKRRKMQSVVECTPSRFLDEIPEHLVEYHEPTAAVD 693
>gi|227523030|ref|ZP_03953079.1| ATP-dependent DNA helicase PcrA [Lactobacillus hilgardii ATCC 8290]
gi|227089848|gb|EEI25160.1| ATP-dependent DNA helicase PcrA [Lactobacillus hilgardii ATCC 8290]
Length = 743
Score = 219 bits (558), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 211/729 (28%), Positives = 342/729 (46%), Gaps = 126/729 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ LN Q +A P+LI+AG GSGK + P NILA+TFT
Sbjct: 7 LKGLNKDQKDAVI-HTEGPVLIMAGAGSGKTRVLTHRIAYIIEHNHVMPWNILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+ ++ + + ++ +STFH+ +++ R + ++L F I +QR
Sbjct: 66 AAREMRERVSKLLDE-SGDDVWVSTFHALCVRILRRNIDQLGFNRAFTIADTSEQR---- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+VKR+ ++ F RA L S+S+
Sbjct: 121 -----------TLVKRVLRELNIDPKRFD-PRAVLS--------SISN------------ 148
Query: 410 GMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
AK TP F+ D +I A + E Y LR +LD+ DLI +++L F
Sbjct: 149 ----AKNDLLTPKAFKAQADSDFDQIVADVYERYQAELRQNESLDFDDLIMTTIELFDQF 204
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISG 524
+V YQD + I VDE+QDT+ QY L+ LA ++ I +VGD DQSI+ + GA++
Sbjct: 205 SDVLSYYQDKFHYIHVDEYQDTNEAQYRLVNTLAKKSKNICVVGDADQSIYGWRGANMQN 264
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
F++D+ + L +NYRST+ +++AA+++I HN+ R KN+ T+N G KI
Sbjct: 265 ILDFKEDYPDAHVTLLEQNYRSTKTVLDAANAVIAHNLNRAD-KNLWTENEQGEKISYYR 323
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E+ + +++ KI E P +YGS AILYR +V + + IP+ +
Sbjct: 324 GQTENDEARYVVAKIQEEMGK-PKR--NYGSFAILYRTNAQSRVIEETLLKANIPYTMVG 380
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGC--DDGPYRRVFKAFLLLEKEEKKRVIDH--IDKIST 699
G FY +K +R +A L TL G D + RV E KR I ++K+ T
Sbjct: 381 GHKFYDRKEIRDALAYL--TLLGNPRDSMSFERVIN--------EPKRGIGETSLEKLRT 430
Query: 700 I---RKCSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITS 755
S + A+ +I +IS K S + + ++IS + ++ +++ IT
Sbjct: 431 FANDHGWSLLEASKNIDLANEISSRAKNS-------ISMFEQIISDVAKKLDTMT--ITE 481
Query: 756 VANMVPQK--YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
+ + K YL L L++ Q L ++ +F+S T ++ N
Sbjct: 482 LTEEILDKSGYL------------STLKSSKSLQA--QTRLENLEEFISV--TQKYDQDN 525
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
DQ G N+ ++++S+ + + + VTL T+H +KGLE+ +VF+
Sbjct: 526 PDQ--VGQDNL----VNFLSDLALVSDQDDLDEETSEVTLMTMHAAKGLEFPVVFIMGME 579
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSR 930
E PL A +E + ++EERRL YV +TRA++KL++ M+ Q SR
Sbjct: 580 EGLFPLSR---AAQDE--SELQEERRLAYVGITRAKEKLYLTNAYSRMLYGRRQNNPESR 634
Query: 931 FLKEIPHHL 939
F+ EI L
Sbjct: 635 FVNEIKPEL 643
>gi|410093918|ref|ZP_11290382.1| ATP-dependent DNA helicase Rep [Pseudomonas viridiflava UASWS0038]
gi|409758701|gb|EKN43976.1| ATP-dependent DNA helicase Rep [Pseudomonas viridiflava UASWS0038]
Length = 669
Score = 219 bits (558), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 191/726 (26%), Positives = 324/726 (44%), Gaps = 125/726 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+AMTFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIKAQYIVAMTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ + LT+STFH+ L + R +L F I+
Sbjct: 60 AAREMKERVGTLLRAGEGRGLTVSTFHNLGLNVIRKEHTRLGYKPGFSIFDETD------ 113
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
VK + TD++ Q D
Sbjct: 114 -------------VKALMTDIM------------------------------QKEYSGDD 130
Query: 410 GMDVAK---ASGKT----PAEF----RKIGDEIGAAILENYNGILRSCNALDYHDLISCS 458
G+D K + K PAE R ++ A + +Y L++ NA+D+ DLI
Sbjct: 131 GVDEIKNMIGAWKNDLILPAEALENSRNPKEQTAAIVYTHYQRTLKAYNAVDFDDLILLP 190
Query: 459 VKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSF 517
VKL ++ +++Q+ + ++VDE+QDT+A QY L+++L + ++ T+VGDDDQSI+++
Sbjct: 191 VKLFQEHADILEKWQNKVRYLLVDEYQDTNASQYLLVKLLIGTRHQFTVVGDDDQSIYAW 250
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GA + D+ + K + L +NYRST I+ A+ LI +N + K + ++ HG
Sbjct: 251 RGARPENLMLLKDDYPSLKVVMLEQNYRSTSRILRCANVLISNNPHEFE-KQLWSEMGHG 309
Query: 578 SKIIIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
+I + C NEDA+ + +I L ++ P Y AILYR K+ + +
Sbjct: 310 DEIRVIRCRNEDAEAERVAVEILTLHLRTDRP-----YSDFAILYRGNYQAKLIELKLQH 364
Query: 636 RKIPFNIHGV-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+IP+ + G +F+ ++ V+ ++A R + DD + RV + +E ++ +
Sbjct: 365 HQIPYRLSGGNSFFGRQEVKDLMAYFRLLVNPDDDNAFLRVIN---VPRREIGSTTLEKL 421
Query: 695 DKISTIRKCSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI 753
+T RK S +A +I G + F +L R + + V
Sbjct: 422 GNYATERKISMYAATDEIGLGEHLDSRF-----------------TDRLQRFKRWMDGVR 464
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
A P L + V+D D L +++ Y +++V F +
Sbjct: 465 QQCAQNDPIAAL--RSMVMDIDYENWLRQNSSSEKAADYRMSNVW------FLIEALKNT 516
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+++D++G + + +A I + R+ + + D V + T+H SKGLE+ VF+
Sbjct: 517 LEKDEEGGMTIEEA-IGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGME 575
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSR 930
E +P + ++EEERRL YV +TRAR+ L + + + PSR
Sbjct: 576 EEILPHRSSI------EADTIEEERRLAYVGITRARQTLAFTFAAKRKQYGEIIDCAPSR 629
Query: 931 FLKEIP 936
FL E+P
Sbjct: 630 FLDELP 635
>gi|297581602|ref|ZP_06943524.1| ATP-dependent DNA helicase Rep [Vibrio cholerae RC385]
gi|297534009|gb|EFH72848.1| ATP-dependent DNA helicase Rep [Vibrio cholerae RC385]
Length = 671
Score = 219 bits (558), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 203/735 (27%), Positives = 357/735 (48%), Gaps = 99/735 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ +GK ++ L +STFH+ L + R + L + F ++
Sbjct: 62 EMKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R +L ++S++K D +
Sbjct: 110 ---DQDQLALLKELTEKQL--DGDKDLLR--------LLLSTISNWK--------NDMLT 148
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
+A E ++ A E Y ++S NALD+ DLI V LL + EV Q +
Sbjct: 149 PPQAKAMAKGE----QQQLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEEVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L+++L R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F + K I+L +NYRST I+ AA+ LI +N Q K + ++ + G K+ + +NED +
Sbjct: 265 FPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQ-KALFSELAEGEKLKVILANNEDHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +I+ H + Y AILYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AERVTAEIIAHKF---LNRTEYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ ++E ++ + + +R S +A+
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PKREIGPATLEKLGSYANMRGKSLFTASF 437
Query: 711 DI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQR 769
++ +SG L R+ L I+ R ++ AV V ++ + +L E
Sbjct: 438 ELGLEQHLSG----RGLENLRRFTEWLVAIADNAERGNTVEAVRALVRDIRYEDWLYETS 493
Query: 770 AVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAF 828
A + + +V+D S + A EG N DQ +K LK
Sbjct: 494 ASP---------------KAAEMRMKNVSDLYS--WIVADLEGDNPDQQEK----TLKEV 532
Query: 829 IDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVN 888
+ ++ R+ R + +D+ ++V L T+H SKGLE+ V++ A E +P H+ +++
Sbjct: 533 VQRLTLRDMME-RGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILP--HQ--TSID 587
Query: 889 EKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW-QLLQP--SRFLKEIPHHLREVQAE 945
E+ +VEEERRL+YV +TRA+++L ++ + +L++P SRFL E+P E + +
Sbjct: 588 EE--NVEEERRLMYVGITRAQRELTLMVCKERRQFGELIKPTQSRFLDELPQEDIEWEVK 645
Query: 946 QSVQDQHENIPEGTA 960
+ Q E + +G A
Sbjct: 646 KKPVTQEERMAKGQA 660
>gi|343506350|ref|ZP_08743840.1| ATP-dependent DNA helicase Rep [Vibrio ichthyoenteri ATCC 700023]
gi|342802804|gb|EGU38204.1| ATP-dependent DNA helicase Rep [Vibrio ichthyoenteri ATCC 700023]
Length = 672
Score = 219 bits (558), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 195/728 (26%), Positives = 345/728 (47%), Gaps = 96/728 (13%)
Query: 254 EAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAASEMRDRI 298
+ A +S P L++AG GSGK G NI A+TFT AA EM++R+
Sbjct: 8 DQAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAREMKERV 67
Query: 299 GSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVRLLENE 358
G +GK +K L +STFH+ L + + + L + F ++ + +
Sbjct: 68 GQTLGKQESKGLMVSTFHTLGLNIIKREHKHLGLKAGFSLFD---------------DQD 112
Query: 359 KILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDVAKASG 418
++ ++K ++ L DG +R L ++S++K D + +A
Sbjct: 113 QLSLLKELTETQL--DGDKDLLR--------QLLSAISNWK--------NDMLTPEQAKA 154
Query: 419 KTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKA 478
E ++ A E Y +R+ NALD+ DLI+ V LL T E +Q+ +
Sbjct: 155 YAQGE----QQQLFAFCFEMYQKQMRAYNALDFDDLIALPVLLLRTNEEARTRWQNRIRY 210
Query: 479 IIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKE 537
++VDE+QDT+ QY L+++L R+T+VGDDDQSI+S+ GA +D+ N K
Sbjct: 211 LLVDEYQDTNTSQYELVRLLVGQRERLTVVGDDDQSIYSWRGAKPQNLVLLGQDYPNLKL 270
Query: 538 IRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIID 597
I+L +NYRST I+ A+ LI +N + K++ ++ G K+ + NED + +
Sbjct: 271 IKLEQNYRSTNRILRCANILIANNPHVYE-KSLFSELPDGEKLKVLLAKNEDHEAERVTG 329
Query: 598 KILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRKKVVRAI 656
+I+ H + +Y AILYR ++ + + + ++P+ + G +F+ + ++ I
Sbjct: 330 EIIAHKF---LNRTNYRDYAILYRGNHQSRLIEKSLMQNRVPYKLSGGTSFFARAEIKDI 386
Query: 657 IAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAK 716
+A L+ + DD + R+ ++E ++ + + +R S A+ F
Sbjct: 387 MAYLKVLVNPDDDNAFLRIVNT---PKREIGPVTLEKLGSYANMRGKSLFEAS---FEMG 440
Query: 717 ISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDG 776
+ L ++ L I+ R ++ AV + V ++ + +L E A
Sbjct: 441 LEQHLTGRGLENLQRFTTWLVKIADQAERGDTVEAVRSLVRDIHYEDWLYETSASP---- 496
Query: 777 GKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAFIDYISER 835
+ + +V+D S + A EG N DQ++K LK + ++ R
Sbjct: 497 -----------KAAEMRMKNVSDLYS--WIVADLEGDNYDQEEK----TLKEVVQRLTLR 539
Query: 836 ETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVE 895
+ R + ++ ++V L T+H SKGLE+ V++ + E +P H+ +++E +VE
Sbjct: 540 DMME-RNEEDEDSDAVQLMTLHASKGLEFPYVYLLGSEEGILP--HQ--TSIDED--NVE 592
Query: 896 EERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAEQSVQDQH 952
EERRL+YV +TRA+K+L F + +LL+P SRFL E+P E + + Q
Sbjct: 593 EERRLMYVGITRAQKELTFTMCRERRQYGELLKPTQSRFLDELPFDDVEWEQTKKPVTQE 652
Query: 953 ENIPEGTA 960
E + +G A
Sbjct: 653 ERMAKGQA 660
>gi|66043346|ref|YP_233187.1| ATP-dependent DNA helicase RepA [Pseudomonas syringae pv. syringae
B728a]
gi|422672669|ref|ZP_16732032.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. aceris
str. M302273]
gi|440743451|ref|ZP_20922760.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae BRIP39023]
gi|63254053|gb|AAY35149.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. syringae
B728a]
gi|330970406|gb|EGH70472.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. aceris
str. M302273]
gi|440375216|gb|ELQ11926.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae BRIP39023]
Length = 669
Score = 219 bits (558), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 191/726 (26%), Positives = 324/726 (44%), Gaps = 125/726 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+AMTFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ + LT+STFH+ L + R +L F I+
Sbjct: 60 AAREMKERVGTLLRGGEGRGLTVSTFHNLGLNIIRKEHTRLGYKPGFSIFDETD------ 113
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
VK + TD++ Q D
Sbjct: 114 -------------VKALMTDIM------------------------------QKEYSGDD 130
Query: 410 GMDVAK---ASGKT----PAEF----RKIGDEIGAAILENYNGILRSCNALDYHDLISCS 458
G+D K S K PAE R ++ A + +Y L++ NA+D+ DLI
Sbjct: 131 GVDEIKNMIGSWKNDLILPAEALENARNPKEQTAAIVYTHYQRTLKAYNAVDFDDLILLP 190
Query: 459 VKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSF 517
VKL ++ +++Q+ + ++VDE+QDT+A QY L+++L + ++ T+VGDDDQSI+++
Sbjct: 191 VKLFQEHADILEKWQNKVRYLLVDEYQDTNASQYLLVKLLIGTRHQFTVVGDDDQSIYAW 250
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GA + D+ + K + L +NYRST I+ A+ LI +N + K + ++ HG
Sbjct: 251 RGARPENLMLLKDDYPSLKVVMLEQNYRSTSRILRCANVLISNNPHAFE-KQLWSEMGHG 309
Query: 578 SKIIIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
+I + C NEDA+ + +I L ++ P Y AILYR K+ + +
Sbjct: 310 DEIRVIRCRNEDAEAERVAMEILTLHLRTDRP-----YSDFAILYRGNYQAKLIELKLQH 364
Query: 636 RKIPFNIHGV-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
++P+ + G +F+ ++ V+ ++A R + DD + RV + +E ++ +
Sbjct: 365 HQVPYRLSGGNSFFGRQEVKDLMAYFRLLVNPDDDNAFLRVIN---VPRREIGSTTLEKL 421
Query: 695 DKISTIRKCSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI 753
+T RK S +A +I G + F +L R + + V
Sbjct: 422 GNYATERKVSMYAATDEIGLGEHLDSRF-----------------TDRLQRFKRWMDGVR 464
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
A P L + V+D D L +++ Y +++V F +
Sbjct: 465 QQCAQNDPIAAL--RSMVMDIDYENWLRQNSSSEKAADYRMSNVW------FLIEALKNT 516
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+++D++G + + +A I + R+ + + D V + T+H SKGLE+ VF+
Sbjct: 517 LEKDEEGGMTIEEA-IGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGME 575
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSR 930
E +P + ++EEERRL YV +TRAR+ L + + + PSR
Sbjct: 576 EEILPHRSSI------EADTIEEERRLAYVGITRARQTLAFTFAAKRKQYGEIIDCAPSR 629
Query: 931 FLKEIP 936
FL E+P
Sbjct: 630 FLDELP 635
>gi|393199220|ref|YP_006461062.1| superfamily I DNA and RNA helicase [Solibacillus silvestris
StLB046]
gi|327438551|dbj|BAK14916.1| superfamily I DNA and RNA helicase [Solibacillus silvestris
StLB046]
Length = 752
Score = 219 bits (558), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 204/741 (27%), Positives = 327/741 (44%), Gaps = 149/741 (20%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAA 291
+N QQ EA PLLI+AG GSGK + PS ILA+TFT AA
Sbjct: 11 GMNPQQAEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLVVEREVYPSKILAITFTNKAA 69
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEA 351
EMR+RI I+G T + + +STFHS +++ R + +++ + F I Q I
Sbjct: 70 REMRERIDGILGNGTTESMWVSTFHSMCVRILRRNIDRIGYSKSFSILDSSDQLTVI--- 126
Query: 352 VRLLENEKI--------LVVKRIST---DMLTTDGHFGYMRASLFMMNAMLFFSMSSFKL 400
+L+ + I ++ IS+ + +T DG F N +
Sbjct: 127 KNILKQDNIDPKKYDPRAILNTISSAKNECITVDG---------FEEN-----------M 166
Query: 401 CQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVK 460
+N FE+ I A + + Y LR +LD+ DLI +++
Sbjct: 167 NPHNPFEK----------------------IVAQVYKGYQKRLRQNQSLDFDDLIMLTIR 204
Query: 461 LLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNG 519
L P+V + YQ+ ++ I VDE+QDT+ QY L+Q+LA R I +VGD DQSI+ + G
Sbjct: 205 LFKEAPDVLEFYQNKFQYIHVDEYQDTNKSQYLLVQLLAKKFRNICVVGDSDQSIYRWRG 264
Query: 520 ADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSK 579
ADIS SF KD+ K I L +NYRST+ I++AA+S+I+ N R + K ++T+N G
Sbjct: 265 ADISNILSFEKDYKEAKVIMLEQNYRSTKRILQAANSVIEKNKDRYK-KVLRTENPEGEM 323
Query: 580 IIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIP 639
I + + NE + +++ I + + + + AILYR +V + + +
Sbjct: 324 IQLYKAGNEQDEAQYVVRTIQKLMKDEDYKLDDF---AILYRTNAQSRVMEDVLVKSNMN 380
Query: 640 FNI-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI-----DH 693
+ I G FY +K ++ ++A LR DD R+ E KR I D
Sbjct: 381 YQIVGGTKFYDRKEIKDLLAYLRLIANNDDDLSLARIIN--------EPKRAIGATSFDK 432
Query: 694 IDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVR------REP 747
+ + R S A ++ +SG K + E ++R RE
Sbjct: 433 MLVYAMERDRSIFDAMGELVFMGLSG-----------KAATSAENFYNMIRSLSDRQREL 481
Query: 748 SISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTA 807
S++ ++ V + +L+ ++ + L ++ +FL+ T
Sbjct: 482 SVTEIVEEVLERSGYRQMLKAEKSIEAES----------------RLENIEEFLTV--TQ 523
Query: 808 AKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIV 867
A E + DQ + L D S E E + ++ L T+H +KGLE+ +V
Sbjct: 524 AFEARSEDQSLVAFLTDLALIADIDSLDEEEKAK-------GTIILMTMHAAKGLEFPVV 576
Query: 868 FVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMD 920
F+ E P E + EERRL+YV TRA ++L++ ++
Sbjct: 577 FIIGMEENIFPHSRSL-----ESEDEMAEERRLMYVGATRAEQRLYLSCAGSRTIFGRTG 631
Query: 921 ANWQLLQPSRFLKEIPHHLRE 941
N PSRFL+EI ++ E
Sbjct: 632 YN----APSRFLREIDENVLE 648
>gi|404398164|ref|ZP_10989748.1| ATP-dependent DNA helicase Rep [Pseudomonas fuscovaginae UPB0736]
Length = 669
Score = 219 bits (558), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 192/726 (26%), Positives = 327/726 (45%), Gaps = 125/726 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+AMTFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ + LT+STFH+ L + R +L F I+
Sbjct: 60 AAREMKERVGTLLRAGEGRGLTVSTFHNLGLNIIRKEHARLGYKPGFSIFDEAD------ 113
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
VK + TD++ Q D
Sbjct: 114 -------------VKALMTDIM------------------------------QKEYSGDD 130
Query: 410 GMDVAK---ASGKT----PAEF----RKIGDEIGAAILENYNGILRSCNALDYHDLISCS 458
G+D K S K PA+ R ++ A + +Y L++ NA+D+ DLI
Sbjct: 131 GVDEIKNMIGSWKNDLILPAQALENARNPKEQTAAIVYTHYQRTLKAFNAVDFDDLILLP 190
Query: 459 VKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSF 517
VKL ++ +++Q+ + ++VDE+QDT+A QY L+++L N+ T+VGDDDQSI+++
Sbjct: 191 VKLFEDNADILEKWQNRVRYLLVDEYQDTNASQYLLVKMLIGKRNQFTVVGDDDQSIYAW 250
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GA + D+ + K + L +NYRST I+ A+ LI +N + K + ++ HG
Sbjct: 251 RGARPENLMLLKDDYPSLKVVMLEQNYRSTSRILRCANVLISNNPHEFE-KQLWSEMGHG 309
Query: 578 SKIIIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
+I + C NEDA+ + +I L +N P Y AILYR K+ + +
Sbjct: 310 DEIRVIRCRNEDAEAERVAMEILTLHLRTNRP-----YSDFAILYRGNYQAKLIELKLQH 364
Query: 636 RKIPFNIHGV-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
++P+ + G +F+ ++ V+ ++A R + DD + RV + +E ++ +
Sbjct: 365 HQVPYRLSGGNSFFGRQEVKDLMAYFRLIVNPDDDNAFLRVIN---VPRREIGSTTLEKL 421
Query: 695 DKISTIRKCSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI 753
+T RK S +A +I G + F +L++ ++ + VR + + I
Sbjct: 422 GNYATERKISMYAATDEIGLGEHLDSRFT-ERLSRFKRFM-------DRVREQCAGEDPI 473
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
+++ +M V+D D L ++ Y +++V F +
Sbjct: 474 SALRSM-----------VMDIDYENWLRTNSSSDKAADYRMSNVW------FLIEALKNT 516
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+++D+ G + V A I + R+ + + D V + T+H SKGLE+ VF+
Sbjct: 517 LEKDEDGDMTVEDA-IGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGME 575
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSR 930
E +P + ++EEERRL YV +TRAR+ L + + + PSR
Sbjct: 576 EEILPHRSSI------EADTIEEERRLAYVGITRARQTLAFTFAAKRKQYGEVIDCAPSR 629
Query: 931 FLKEIP 936
FL E+P
Sbjct: 630 FLDELP 635
>gi|154685156|ref|YP_001420317.1| PcrA [Bacillus amyloliquefaciens FZB42]
gi|394992864|ref|ZP_10385633.1| PcrA [Bacillus sp. 916]
gi|154351007|gb|ABS73086.1| PcrA [Bacillus amyloliquefaciens FZB42]
gi|393806305|gb|EJD67655.1| PcrA [Bacillus sp. 916]
Length = 739
Score = 219 bits (558), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 216/740 (29%), Positives = 328/740 (44%), Gaps = 137/740 (18%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTF 286
++ L LN Q EA PLL++AG GSGK ++P NILA+TF
Sbjct: 6 NQLLSGLNPVQQEA-VKTTDGPLLLMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITF 64
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR 346
T AA EM++R+ SI+G A E+ ISTFHS +++ R +++ F I Q
Sbjct: 65 TNKAAREMKERVESILGPG-ADEIWISTFHSMCVRILRRDIDRIGINRNFSILDTADQLS 123
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
I + IL + I G S+SS
Sbjct: 124 VI---------KGILKERNIDPKKFDPRSILG---------------SISS--------- 150
Query: 407 ERDGMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLL 462
AK P EF K D++ + + +Y L +LD+ DLI ++KL
Sbjct: 151 -------AKNELIEPEEFAKTAGGYYDQVTSDVYTDYQKKLLKNQSLDFDDLIMTTIKLF 203
Query: 463 STFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGAD 521
PEV + YQ ++ I VDE+QDT+ QY L++ LA+ I +VGD DQSI+ + GAD
Sbjct: 204 ERVPEVLEFYQRKFQYIHVDEYQDTNRAQYLLVKQLAARLENICVVGDSDQSIYRWRGAD 263
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII 581
I+ SF KD+ + I L +NYRST+ I++AA+ +I++N R + KN+ T+N G K+
Sbjct: 264 IANILSFEKDYPSANVILLEQNYRSTKRILQAANEVIKNNSNR-KPKNLWTENDEGIKLS 322
Query: 582 IKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN 641
NE + F+ KI E S+G + IAILYR +V + + + +N
Sbjct: 323 YYSGDNEFGEGQFVAGKIYELHSSGRRKLS---DIAILYRTNAQSRVIEETLLKSGLNYN 379
Query: 642 I-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFK------AFLLLEKEEKKRVIDHI 694
I G FY +K ++ I+A LR DD + R+ LEK ++ +
Sbjct: 380 IVGGTKFYDRKEIKDILAYLRLVSNPDDDISFTRIVNVPKRGVGATSLEKIASYAAMNGM 439
Query: 695 DKISTIRKCSFISA------ACDIFGAKISGTFKRSQLTQGRKVL----LTLEMISKLVR 744
I++ FI A D FGA I LT + L LT E++ K
Sbjct: 440 SMFQAIKQVDFIGVSAKAANALDGFGAMI------ENLTNMQDYLSITELTEEILEKTEY 493
Query: 745 REPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTK 804
RE + +K + Q + + D + ++ + +S + L+A +TD
Sbjct: 494 RE-----------MLKAEKSIEAQSRLENIDEFLSVTKNFEQKSEDKSLVAFLTDL---- 538
Query: 805 FTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEW 864
L A ID + ++E E +++VTL T+H +KGLE+
Sbjct: 539 -------------------ALIADIDQLDQKEEE------SGGKDAVTLMTLHAAKGLEF 573
Query: 865 DIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD---A 921
+VF+ E P +EEERRL YV +TRA ++L++ M
Sbjct: 574 PVVFLMGMEEGVFPHSRSLMEE-----AEMEEERRLAYVGITRAEEELYLTNAKMRTLFG 628
Query: 922 NWQLLQPSRFLKEIPHHLRE 941
+ SRF++EIP L E
Sbjct: 629 RTNMNPESRFIREIPGDLLE 648
>gi|229527316|ref|ZP_04416709.1| ATP-dependent DNA helicase Rep [Vibrio cholerae 12129(1)]
gi|229335324|gb|EEO00808.1| ATP-dependent DNA helicase Rep [Vibrio cholerae 12129(1)]
Length = 671
Score = 219 bits (558), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 204/735 (27%), Positives = 357/735 (48%), Gaps = 99/735 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ +GK ++ L +STFH+ L + R + L + F ++
Sbjct: 62 EMKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R +L ++S++K D +
Sbjct: 110 ---DQDQLALLKELTEKQL--DGDKDLLR--------LLLSTISNWK--------NDMLT 148
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
+A E ++ A E Y ++S NALD+ DLI V LL + EV Q +
Sbjct: 149 PPQAKAMAKGE----QQQLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEEVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L+++L R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F + K I+L +NYRST I+ AA+ LI +N Q K + ++ + G K+ + +NED +
Sbjct: 265 FPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQ-KALFSELAEGEKLKVILANNEDHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +I+ H + Y AILYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AERVTAEIIAHKF---LNRTDYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ ++E ++ + + +R S +A+
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PKREIGPATLEKLGSYANMRGKSLFTASF 437
Query: 711 DI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQR 769
++ +SG L R+ L I+ R ++ AV V ++ + +L E
Sbjct: 438 ELGLEQHLSG----RGLDNLRRFTEWLVAIADNAERGNTVEAVRALVRDIRYEDWLYETS 493
Query: 770 AVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAF 828
A + + +V+D S + A EG N DQ +K LK
Sbjct: 494 ASP---------------KAAEMRMKNVSDLYS--WIVADLEGDNPDQQEK----TLKEV 532
Query: 829 IDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVN 888
+ ++ R+ R + +D+ ++V L T+H SKGLE+ V++ A E +P H+ +++
Sbjct: 533 VQRLTLRDMME-RGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILP--HQ--TSID 587
Query: 889 EKGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAE 945
E+ +VEEERRL+YV +TRA+++L F++ +L++P SRFL E+P E + +
Sbjct: 588 EE--NVEEERRLMYVGITRAQRELTFMVCKERRQFGELIKPTQSRFLDELPQEDIEWEVK 645
Query: 946 QSVQDQHENIPEGTA 960
+ Q E + +G A
Sbjct: 646 KKPVTQEERMAKGQA 660
>gi|421097940|ref|ZP_15558617.1| putative ATP-dependent helicase PcrA [Leptospira borgpetersenii
str. 200901122]
gi|410799012|gb|EKS01095.1| putative ATP-dependent helicase PcrA [Leptospira borgpetersenii
str. 200901122]
Length = 731
Score = 219 bits (558), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 216/745 (28%), Positives = 336/745 (45%), Gaps = 123/745 (16%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTF 286
S +L LN++Q +A + P+LI+AG GSGK G+ I A+TF
Sbjct: 3 SSFLIGLNEEQKKAVL-QTTGPVLILAGAGSGKTRVITHRIANLLVNHGMD--RICALTF 59
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR 346
T AA+EM +R+ ++V A L I TFHS L + R A S F +Y Q
Sbjct: 60 TNKAAAEMVERVKNLVPFIPAN-LQIKTFHSLCLYILRREAIFFGFDSAFTVYDTTLQES 118
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFK---LCQY 403
+ + VVK +S D+ F +ML +SS K L
Sbjct: 119 LLKQ-----------VVKDLSLDL-------------KFYKPSMLGNYISSLKDKMLSPE 154
Query: 404 NKFERDG-MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLL 462
E++G D +K E+ K D + A D+ DLI +V+L
Sbjct: 155 AYLEKEGRTDFSKTVSAIYKEYEKRKD---------------ASRAFDFGDLIWKTVQLF 199
Query: 463 STFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGAD 521
P+ +Y+ W+ ++VDE+QDT+ +QY L+ +LA R + +VGDDDQSI+S+ GAD
Sbjct: 200 QKSPDAIAKYRHKWEYVMVDEYQDTNKVQYQLVLLLAGEKRNLCVVGDDDQSIYSWRGAD 259
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII 581
I +F KDF I+L NYRS+ I+ AAS +I +N +R Q K + T+N GS I+
Sbjct: 260 IGNILNFEKDFPESTVIKLEENYRSSSNIILAASKVISNNTQRKQ-KEIFTNNPEGSPIV 318
Query: 582 IKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN 641
+ E NE + +I +I S G Y +IAI YR + F+ A R IP+
Sbjct: 319 LNEFENESEEAHGVITRIRSAYSYG----TEYKNIAIFYRTNSQSRYFEEALRNLGIPYK 374
Query: 642 IH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTI 700
I G F+ + ++ IA L D R+ + ID I + S
Sbjct: 375 IFGGFRFFDRAEIKDFIAYLSVVSNPLDSISLLRIVN---YPPRGIGDSGIDKIREFSLE 431
Query: 701 RKCSFISAAC--DIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
+ S + A DI K++ ++GR++ + S L+ + + N
Sbjct: 432 KGISLLEALGQEDI-------PLKKAAKSKGREL---YSLFSDLIEK---------AEKN 472
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV--DQ 816
P + LE LLN ++ +L + T+ + +E N +
Sbjct: 473 SSPSEIALE-----------LLNRS----GLMSHLRDEGTEESIARLENLQELVNSIEEY 517
Query: 817 DKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
+K L+ +++ IS +E + D N +T +H +KGLE+ IVF++ E
Sbjct: 518 EKNSDSPSLEEYLNQISLITSEEESKELIDYVNLMT---VHNAKGLEFKIVFLSGLEEGT 574
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ---PSRFLK 933
P H ++ + EEERRL YVA+TRAR++L + Y + ++ PSRFL
Sbjct: 575 FP--HSM--SLEDSHFGDEEERRLFYVALTRAREQLLLSYCRTSRKFGKVEDRIPSRFLS 630
Query: 934 EIPHHLREVQAEQSVQDQHENIPEG 958
E+P RE AE+ +++ P+G
Sbjct: 631 EVP---RECFAERVSRERTARRPQG 652
>gi|291547104|emb|CBL20212.1| Superfamily I DNA and RNA helicases [Ruminococcus sp. SR1/5]
Length = 760
Score = 219 bits (558), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 152/467 (32%), Positives = 234/467 (50%), Gaps = 58/467 (12%)
Query: 227 DTIQTIKTQNMPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK------------ 274
DT+ K + L +LN Q EAA PLLI+AG GSGK
Sbjct: 6 DTVHMEKEMEIKMSIHDALDTLNPMQREAAV-HTEGPLLILAGAGSGKTRVLTHRIAYLM 64
Query: 275 ---GISPSNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLE 331
G++P NILA+TFT AASEMR+R+ I G A+ + +STFHS +++ R H E L
Sbjct: 65 EEKGVNPWNILAITFTNKAASEMRERVNKIAGMG-AESVWVSTFHSACVRILRRHIEVLG 123
Query: 332 RTSEFLIYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAML 391
S F IY Q+ + E R + I+T + G +
Sbjct: 124 FGSNFTIYDADDQKTVMKEIFRKFD---------INTKIYKERG-------------VLA 161
Query: 392 FFSMSSFKLCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDY 451
S + +L + E + +G P + RKI A + + Y ILR NALD+
Sbjct: 162 EISHAKDELITPEEMELN-------AGGDP-DARKI-----AGMYKEYQSILRGNNALDF 208
Query: 452 HDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDD 510
DLI +V+L P++ YQ+ +K I+VDE+QDT+ Q+ + +LA + + +VGDD
Sbjct: 209 DDLIVKTVELFQHNPDILDYYQERFKYIMVDEYQDTNTAQFKFVSLLAEKYKNLCVVGDD 268
Query: 511 DQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNV 570
DQSI+ F GA+I F K F K +RL +NYRST+ I+ AA+ +I +N +R + K +
Sbjct: 269 DQSIYRFRGANIGNILGFEKVFPEAKVVRLEQNYRSTQNILNAANEVIVNNTERKE-KRL 327
Query: 571 QTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQ 630
T+N G K+ ++ +N + ++ +I++ NG Y A+LYR ++F+
Sbjct: 328 WTENEEGDKVHFRQFNNGFEEAEYVAGEIIQGRRNGK---FQYKDCAVLYRTNAQSRLFE 384
Query: 631 TAFRERKIPFNI-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVF 676
F +P+ I GV FY +K ++ +++ L+T DD RR+
Sbjct: 385 EKFLLANVPYKIVGGVNFYARKEIKDLLSYLKTIDNASDDLAVRRIL 431
Score = 53.1 bits (126), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 847 NENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMT 906
+++ V L T+H +KGLE+ VF+ + P + + + +EEERRL YV +T
Sbjct: 570 DQDYVLLMTLHSAKGLEFPNVFIVGMEDGVFP---GYASIWSGDPSDIEEERRLCYVGIT 626
Query: 907 RARKKLFILYV---MMDANWQLLQPSRFLKEIPHHL 939
RA K+L + M+ Q + SRF++E+P L
Sbjct: 627 RAMKELTLTCAKQRMIRGETQYNRVSRFVREVPREL 662
>gi|421732633|ref|ZP_16171751.1| PcrA [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|407073441|gb|EKE46436.1| PcrA [Bacillus amyloliquefaciens subsp. plantarum M27]
Length = 739
Score = 219 bits (558), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 214/738 (28%), Positives = 326/738 (44%), Gaps = 133/738 (18%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTF 286
++ L LN Q EA PLL++AG GSGK ++P NILA+TF
Sbjct: 6 NQLLSGLNPVQQEA-VKTTDGPLLLMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITF 64
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR 346
T AA EM++R+ SI+G A E+ ISTFHS +++ R +++ F I Q
Sbjct: 65 TNKAAREMKERVESILGPG-ADEIWISTFHSMCVRILRRDIDRIGINRNFSILDTADQLS 123
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
I + IL + I G S+SS
Sbjct: 124 VI---------KGILKERNIDPKKFDPRSILG---------------SISS--------- 150
Query: 407 ERDGMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLL 462
AK P EF K D++ + + +Y L +LD+ DLI ++KL
Sbjct: 151 -------AKNELIEPEEFAKTAGGYYDQVTSDVYTDYQKKLLKNQSLDFDDLIMTTIKLF 203
Query: 463 STFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGAD 521
PEV + YQ ++ I VDE+QDT+ QY L++ LA+ I +VGD DQSI+ + GAD
Sbjct: 204 ERVPEVLEFYQRKFQYIHVDEYQDTNRAQYLLVKQLAARLENICVVGDSDQSIYRWRGAD 263
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII 581
I+ SF KD+ + I L +NYRST+ I++AA+ +I++N R + KN+ T+N G K+
Sbjct: 264 IANILSFEKDYPSANVILLEQNYRSTKRILQAANEVIKNNSNR-KPKNLWTENDEGIKLS 322
Query: 582 IKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN 641
NE + F+ KI E S+G + IAILYR +V + + + +N
Sbjct: 323 YYSGDNEFGEGQFVAGKIYELHSSGRRKLS---DIAILYRTNAQSRVIEETLLKSGLNYN 379
Query: 642 I-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFK------AFLLLEKEEKKRVIDHI 694
I G FY +K ++ I+A LR DD + R+ LEK ++ +
Sbjct: 380 IVGGTKFYDRKEIKDILAYLRLVSNPDDDISFTRIVNVPKRGVGATSLEKIASYAAMNGM 439
Query: 695 DKISTIRKCSFISA------ACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPS 748
I++ FI A D FGA I LT + L E+ +++ +
Sbjct: 440 SMFQAIKQVDFIGVSAKAANALDGFGAMI------ENLTNMQDYLSITELTEEILEK--- 490
Query: 749 ISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAA 808
T M+ + +E Q L ++ +FLS T
Sbjct: 491 -----TEYREMLKAEKSIEA----------------------QSRLENIDEFLSV--TKN 521
Query: 809 KEEGNVDQDKKGCIN--VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDI 866
E+ + D+ + L A ID + ++E E +++VTL T+H +KGLE+ +
Sbjct: 522 FEQKSEDKSLVAFLTDLALIADIDQLDQKEEE------SGGKDAVTLMTLHAAKGLEFPV 575
Query: 867 VFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD---ANW 923
VF+ E P +EEERRL YV +TRA ++L++ M
Sbjct: 576 VFLMGMEEGVFPHSRSLMEE-----AEMEEERRLAYVGITRAEEELYLTNAKMRTLFGRT 630
Query: 924 QLLQPSRFLKEIPHHLRE 941
+ SRF++EIP L E
Sbjct: 631 NMNPESRFIREIPGDLLE 648
>gi|451347990|ref|YP_007446621.1| PcrA [Bacillus amyloliquefaciens IT-45]
gi|449851748|gb|AGF28740.1| PcrA [Bacillus amyloliquefaciens IT-45]
Length = 739
Score = 219 bits (558), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 214/738 (28%), Positives = 326/738 (44%), Gaps = 133/738 (18%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTF 286
++ L LN Q EA PLL++AG GSGK ++P NILA+TF
Sbjct: 6 NQLLSGLNPVQQEA-VKTTDGPLLLMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITF 64
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR 346
T AA EM++R+ SI+G A E+ ISTFHS +++ R +++ F I Q
Sbjct: 65 TNKAAREMKERVESILGPG-ADEIWISTFHSMCVRILRRDIDRIGINRNFSILDTADQLS 123
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
I + IL + I G S+SS
Sbjct: 124 VI---------KGILKERNIDPKKFDPRSILG---------------SISS--------- 150
Query: 407 ERDGMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLL 462
AK P EF K D++ + + +Y L +LD+ DLI ++KL
Sbjct: 151 -------AKNELIEPEEFAKTAGGYYDQVTSDVYTDYQKKLLKNQSLDFDDLIMTTIKLF 203
Query: 463 STFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGAD 521
PEV + YQ ++ I VDE+QDT+ QY L++ LA+ I +VGD DQSI+ + GAD
Sbjct: 204 ERVPEVLEFYQRKFQYIHVDEYQDTNRAQYLLVKQLAARLENICVVGDSDQSIYRWRGAD 263
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII 581
I+ SF KD+ + I L +NYRST+ I++AA+ +I++N R + KN+ T+N G K+
Sbjct: 264 IANILSFEKDYPSANVILLEQNYRSTKRILQAANEVIKNNSNR-KPKNLWTENDEGIKLS 322
Query: 582 IKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN 641
NE + F+ KI E S+G + IAILYR +V + + + +N
Sbjct: 323 YYSGDNEFGEGQFVAGKIYELHSSGRRKLS---DIAILYRTNAQSRVIEETLLKSGLNYN 379
Query: 642 I-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFK------AFLLLEKEEKKRVIDHI 694
I G FY +K ++ I+A LR DD + R+ LEK ++ +
Sbjct: 380 IVGGTKFYDRKEIKDILAYLRLVSNPDDDISFTRIVNVPKRGVGATSLEKIASYAAMNGM 439
Query: 695 DKISTIRKCSFISA------ACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPS 748
I++ FI A D FGA I LT + L E+ +++ +
Sbjct: 440 SMFQAIKQVDFIGVSAKAANALDGFGAMI------ENLTNMQDYLSITELTEEILEK--- 490
Query: 749 ISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAA 808
T M+ + +E Q L ++ +FLS T
Sbjct: 491 -----TEYREMLKAEKSIEA----------------------QSRLENIDEFLSV--TKN 521
Query: 809 KEEGNVDQDKKGCIN--VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDI 866
E+ + D+ + L A ID + ++E E +++VTL T+H +KGLE+ +
Sbjct: 522 FEQKSEDKSLVAFLTDLALIADIDQLDQKEEE------AGGKDAVTLMTLHAAKGLEFPV 575
Query: 867 VFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD---ANW 923
VF+ E P +EEERRL YV +TRA ++L++ M
Sbjct: 576 VFLMGMEEGVFPHSRSLMEE-----AEMEEERRLAYVGITRAEEELYLTNAKMRTLFGRT 630
Query: 924 QLLQPSRFLKEIPHHLRE 941
+ SRF++EIP L E
Sbjct: 631 NMNPESRFIREIPGDLLE 648
>gi|332874157|ref|ZP_08442081.1| putative ATP-dependent DNA helicase Rep [Acinetobacter baumannii
6014059]
gi|332737632|gb|EGJ68535.1| putative ATP-dependent DNA helicase Rep [Acinetobacter baumannii
6014059]
Length = 679
Score = 219 bits (557), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 202/724 (27%), Positives = 336/724 (46%), Gaps = 120/724 (16%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAAS 292
LN++Q E A PLL++AG GSGK I I AMTFT AA
Sbjct: 7 LNNKQ-EEAMKYTQGPLLVLAGAGSGKTSVITRKIAYLVQHCRIPAHRITAMTFTNKAAR 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ ++ + AK L++STFH+F L L R + L + F +I++A
Sbjct: 66 EMKERVTKLLSREEAKGLSVSTFHTFGLNLLRLELKNLPLKANF----------SILDAD 115
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM- 411
KRI D++ D G L A +S +K D +
Sbjct: 116 D---------CKRILMDLMHRDNLSGAESKELI---AKAMKKISDWK--------NDLIL 155
Query: 412 -DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
+ A ++ +TP + + A + + Y LR+ NA+D+ DLI +LL EV
Sbjct: 156 PEQAHSTCETPEDVQ------FAHLYQLYERNLRAYNAVDFDDLIVMPTRLLQENAEVRD 209
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFR 529
++Q+ + ++VDE+QDT+ QY L+++L + T VGDDDQSI+++ GA +
Sbjct: 210 KWQNRVRYLLVDEYQDTNTAQYILVKLLVGVMGQFTAVGDDDQSIYAWRGAKPENMALLK 269
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
+DF N I+L +N RST I++AA+ +IQ+N K + +D HG I I C N+D
Sbjct: 270 QDFPNLHIIKLEQNSRSTSRILKAANCVIQNNPHIFD-KKLWSDKGHGEVIRIITCRNDD 328
Query: 590 AQCAFIIDKILEHA-SNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAF 647
+ ++ +L H NG ++ A+LYR +V +T R+ +IP+ + G +F
Sbjct: 329 DEAERVVKDLLTHKLMNGK----NWKDYAVLYRGNFQARVLETQLRQMQIPYKLSGGTSF 384
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI--DKISTIRK--- 702
+ + ++ +++ LR + DD + R+ KR I + +K+ +
Sbjct: 385 FARAEIKDVMSYLRLIINPEDDSAFLRIINT--------PKRAIGPVTLEKLGLFAQENN 436
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S + A+ D ++S + TQ + + IS R + V M+ +
Sbjct: 437 LSLLGASSD---QRLSMVLPKKAETQLHEF---ADFISTFTRELLEDDEPVPKVRQMMNE 490
Query: 763 K----YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
Y+ EQ A + KL N +N L S +Q L+ D D+
Sbjct: 491 AGYIDYIREQSATPAQEKSKLDNIEN-LFSSIQNLINRAEDV----------------DE 533
Query: 819 KGCINVLKAFI--DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
K +V++ + D + +++ E ++ + V L T+H +KGLE+ V++ E
Sbjct: 534 KNIESVIRKLVLLDMLEQQQEE-------EDTDKVNLLTLHAAKGLEFPYVYIMGLEEEL 586
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDAN---WQLLQPSRFLK 933
+P H+ + A ++EEERRL+YV +TRAR+ L + N + + PSRFL
Sbjct: 587 LP--HKNSIA----AETIEEERRLMYVGITRARQGLTLTLAEQRKNGGQMKQMTPSRFLD 640
Query: 934 EIPH 937
E+P
Sbjct: 641 ELPQ 644
>gi|409349642|ref|ZP_11233046.1| ATP-dependent DNA helicase PcrA [Lactobacillus equicursoris CIP
110162]
gi|407878023|emb|CCK85104.1| ATP-dependent DNA helicase PcrA [Lactobacillus equicursoris CIP
110162]
Length = 740
Score = 219 bits (557), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 202/719 (28%), Positives = 334/719 (46%), Gaps = 111/719 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
LQ LN QQ++A PLL++AG GSGK ++P ILA+TFT
Sbjct: 7 LQGLNPQQVDA-VETTEGPLLVIAGAGSGKTSVLTRRIAYLVEEKRVAPWQILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R ++G A+++ +STFHS +++ R +++ +F I +Q
Sbjct: 66 AAKEMKEREEKLLGD-EARDIWMSTFHSLCVRILRRDGQQIGYDRDFSIADPSEQ----- 119
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAML--FFSMSSFKLCQYNKFE 407
+ ++KRI + L D R+ L ++ + S +K + FE
Sbjct: 120 ----------VTLIKRILKE-LDLDPKLYQPRSILGQISNAKNNLLTPSQYKAQAASPFE 168
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ DV +RK Y G L LD+ DLI ++ L P+
Sbjct: 169 KVVSDV----------YRK------------YQGSLERDMILDFDDLIMQTLVLFKESPD 206
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFD 526
+ YQ+ ++ I+VDE+QDT+ QY L ++LA + I +VGD DQSI+ + GA++
Sbjct: 207 TLEYYQNKFRYILVDEYQDTNEAQYELCRLLAKKYQNICVVGDADQSIYGWRGANMENIL 266
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
+F KD+ + K ++L +NYRST I++AA+++I HN R + K + TD G K+ +
Sbjct: 267 NFEKDYKSAKTVKLEQNYRSTGHILKAANAVIDHNENR-KAKRLWTDKGDGDKVHYYQAQ 325
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGV 645
++ + F++ KI E A Y AILYR + + E +P+ I G
Sbjct: 326 SDRDETRFVLSKIREEVK---AKKRKYQDFAILYRTNAQSRTMEETLVEANVPYQIVGGH 382
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSF 705
FY +K ++ I+A L+ D + R+ KR I S R +F
Sbjct: 383 KFYDRKEIKDIMAYLKLIANPSDSMSFNRIINV--------PKR---GIGTASVARLTAF 431
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYL 765
D G I + +L+ ++ S R+ + S + SV + +
Sbjct: 432 ----ADQMGGGIYEAARNVELS---------DVSSAAARKILAFSDQLASVISFAQTNTV 478
Query: 766 --LEQRAVVDFDGGKLLNEDNDLRSVLQYL--LADVTDFLST--KFTAAKEEGNVDQDKK 819
L +R + F K L +D + + L+ L ++ +FLS +F EE +D
Sbjct: 479 TDLTERVLEVFGYNKAL-KDEEAQGSLEAATRLENLQEFLSVTKRFDDNYEES---EDSS 534
Query: 820 GCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
+ L A + +S+++ + ++ VTL T+H +KGLE+ +VF+ + PL
Sbjct: 535 RLSDFL-AEVSLLSDQDD-------LETDDKVTLMTLHAAKGLEFPVVFLIGMEDNLFPL 586
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
+E +EEERRL YV +TRAR++L++ MM ++Q Q SRF+ EI
Sbjct: 587 GRAIK---DEDPNQLEEERRLAYVGITRAREELYLTSAYSRMMYGSFQHNQKSRFIDEI 642
>gi|381336159|ref|YP_005173934.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp.
mesenteroides J18]
gi|356644125|gb|AET29968.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp.
mesenteroides J18]
Length = 749
Score = 219 bits (557), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 201/737 (27%), Positives = 333/737 (45%), Gaps = 117/737 (15%)
Query: 237 MPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNI 281
MP E +Q +ND+Q EA PLLI+AG GSGK + P I
Sbjct: 1 MPIE--TLIQGMNDKQSEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAHLVQDKNVYPWRI 57
Query: 282 LAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGH 341
LA+TFT AA EMR+RI +V A+E+ +STFH+ ++++ R E++ F I
Sbjct: 58 LAITFTNKAAREMRERIAQLVDPEIAREIWVSTFHAMAVRILRRDGERIGLARNFTIIDT 117
Query: 342 GQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
QR ++KR+ D+ + + NA
Sbjct: 118 SAQR---------------TLMKRVINDLNLDTNQYDPRTILGTVSNA------------ 150
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
++ M AKA K + +E A + Y LR ++D+ DLI ++ L
Sbjct: 151 ------KNDMLTAKAYAKQAG---NVYEETVAEVYAAYQAELRRAQSVDFDDLIMSTIDL 201
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGA 520
P+V + YQ+ ++ + VDE+QDT+ QY+++ +LA +R + +VGD DQSI+ + GA
Sbjct: 202 FKQAPDVLERYQNQFEYLHVDEYQDTNDAQYTIVNLLAKRSRNLAVVGDADQSIYGWRGA 261
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
+++ +F KD+ + + L +NYRST+ I++AA+++I +N +R K++ T+N G KI
Sbjct: 262 NMNNILNFEKDYPDAHTVLLEQNYRSTQNILDAANAVINNNNERID-KSLWTENGKGDKI 320
Query: 581 IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
E + F++ I + A +Y A+LYR + + A + +P+
Sbjct: 321 TYYRAQTERDEANFVLANIQKSRQEKNA---AYSDFAVLYRTNAQSRGIEEALVKANMPY 377
Query: 641 N-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHID 695
+ G FY +K + I++ + D+ + RV E K+ + I+ +
Sbjct: 378 TMVGGHKFYERKEILDIMSYMNLMTNPADNAAFERVV-------NEPKRGIGATSINRLR 430
Query: 696 KISTIRKCSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+ S++ A +I +I+ K++ EM+ L R+ + +T
Sbjct: 431 DFANRMNLSYMGAIENIELAPEITA-------KAASKLIQFAEMMHNL--RQQTEFLTVT 481
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKE-EGN 813
+A + K Q L E ND S Q L ++ +FLS KE +
Sbjct: 482 ELAELAMTKSGYRQN----------LAEKNDPES--QGRLENLEEFLSV----TKEFDSK 525
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+ D ++ + D++S + + +VTL T+H +KGLE+ +VF+
Sbjct: 526 YNPDDPESVDPM---TDFLSSTALMSDLDDFEEGDGAVTLMTLHAAKGLEFPVVFLVGME 582
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLF-------ILYVMMDANWQLL 926
E PL +EEERRL YV +TRA KKL+ +LY AN
Sbjct: 583 EGIFPLSRAM-----MDDDQLEEERRLAYVGITRAMKKLYLTNAFSRLLYGRTQAN---- 633
Query: 927 QPSRFLKEIPHHLREVQ 943
+PSRF+ EI L + Q
Sbjct: 634 EPSRFIDEISSELLDTQ 650
>gi|255319912|ref|ZP_05361113.1| helicase, UvrD/Rep family [Acinetobacter radioresistens SK82]
gi|262379193|ref|ZP_06072349.1| ATP-dependent DNA helicase Rep [Acinetobacter radioresistens SH164]
gi|421465870|ref|ZP_15914557.1| putative ATP-dependent DNA helicase Rep [Acinetobacter
radioresistens WC-A-157]
gi|421857458|ref|ZP_16289793.1| ATP-dependent DNA helicase Rep [Acinetobacter radioresistens DSM
6976 = NBRC 102413]
gi|255303045|gb|EET82261.1| helicase, UvrD/Rep family [Acinetobacter radioresistens SK82]
gi|262298650|gb|EEY86563.1| ATP-dependent DNA helicase Rep [Acinetobacter radioresistens SH164]
gi|400204137|gb|EJO35122.1| putative ATP-dependent DNA helicase Rep [Acinetobacter
radioresistens WC-A-157]
gi|403187106|dbj|GAB75994.1| ATP-dependent DNA helicase Rep [Acinetobacter radioresistens DSM
6976 = NBRC 102413]
Length = 679
Score = 219 bits (557), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 200/723 (27%), Positives = 337/723 (46%), Gaps = 118/723 (16%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAAS 292
LN++QLEA PLL++AG GSGK I I AMTFT AA
Sbjct: 7 LNNKQLEA-MKYTQGPLLVLAGAGSGKTSVITRKIAYLIQQCRIPAHRITAMTFTNKAAR 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G ++ + K L++STFH+F L + R + + F +I++A
Sbjct: 66 EMKERVGKLLSREEIKGLSVSTFHTFGLNMLRLELKNTPLKNNF----------SILDAD 115
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM- 411
KRI D++ D G L A +S +K D +
Sbjct: 116 D---------CKRILMDLMHRDNLSGAESKELI---AKAMKKISDWK--------NDLIL 155
Query: 412 -DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
+ A ++ +TP + + A + + Y LR+ NA+D+ DLI +LL EV
Sbjct: 156 PEQAHSTCETPEDVQM------AHLYQLYERNLRAYNAVDFDDLIVMPTRLLQENAEVRD 209
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFR 529
++Q+ + ++VDE+QDT+ QY L+++L + T VGDDDQSI+++ GA +
Sbjct: 210 KWQNRVRYLLVDEYQDTNTAQYILVKLLVGVMGQFTAVGDDDQSIYAWRGAKPENMALLQ 269
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
+DF N K I+L +NYRST I+++A+++I +N K + +D HG I + C N+D
Sbjct: 270 QDFPNLKVIKLEQNYRSTSRILKSANAVIANNPHIFD-KQLWSDKGHGDVIRVITCRNDD 328
Query: 590 AQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFY 648
+ ++ IL H S Y A+LYR +V +T R+ +IP+ + G +F+
Sbjct: 329 DEAERVVKDILTHKLMNARSWKDY---AVLYRGNFQARVLETQLRQMQIPYKLSGGQSFF 385
Query: 649 RKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI--DKISTIRK---C 703
+ ++ +++ LR + DD + R+ KR I + +K+ +
Sbjct: 386 ARAEIKDVMSYLRLIINPEDDSAFLRIINT--------PKRAIGPVTLEKLGLFAQDNHL 437
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
S +SAA D +++ + +TQ + + I R + + M+ +
Sbjct: 438 SLLSAAGD---QRLTMVIPKKAVTQLHEF---ADFIGNFTRELLDDDEPVPKIRQMMNEA 491
Query: 764 ----YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKK 819
Y+ EQ A + KL N ++ L S +Q L+ D D K
Sbjct: 492 GYIDYIREQAATPAQEKSKLDNIES-LYSSIQSLINRAEDV----------------DDK 534
Query: 820 GCINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
+V++ +D + +++ E ++ + V L T+H +KGLE+ V++ E +
Sbjct: 535 NIESVIRKMVLLDMLEQQQEE-------EDIDKVNLLTLHAAKGLEFPYVYMIGLEEELL 587
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDAN---WQLLQPSRFLKE 934
P H+ N +E ++EEERRL+YV +TRAR+ L + N + + PSRFL E
Sbjct: 588 P--HK-NSIASE---TIEEERRLMYVGITRARQALTLTLAEQRKNGGQMKQMTPSRFLDE 641
Query: 935 IPH 937
+P
Sbjct: 642 LPQ 644
>gi|408410580|ref|ZP_11181789.1| ATP-dependent DNA helicase PcrA [Lactobacillus sp. 66c]
gi|408410801|ref|ZP_11182001.1| ATP-dependent DNA helicase PcrA [Lactobacillus sp. 66c]
gi|407875042|emb|CCK83807.1| ATP-dependent DNA helicase PcrA [Lactobacillus sp. 66c]
gi|407875263|emb|CCK83595.1| ATP-dependent DNA helicase PcrA [Lactobacillus sp. 66c]
Length = 740
Score = 219 bits (557), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 202/719 (28%), Positives = 334/719 (46%), Gaps = 111/719 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
LQ LN QQ++A PLL++AG GSGK ++P ILA+TFT
Sbjct: 7 LQGLNPQQVDA-VETTEGPLLVIAGAGSGKTSVLTRRIAYLVEEKRVAPWQILAITFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R ++G A+++ +STFHS +++ R +++ +F I +Q
Sbjct: 66 AAKEMKEREEKLLGD-EARDIWMSTFHSLCVRILRRDGQQIGYDRDFSIADPSEQ----- 119
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAML--FFSMSSFKLCQYNKFE 407
+ ++KRI + L D R+ L ++ + S +K + FE
Sbjct: 120 ----------VTLIKRILKE-LDLDPKLYQPRSILGQISNAKNNLLTPSQYKAQAASPFE 168
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+ DV +RK Y G L LD+ DLI ++ L P+
Sbjct: 169 KVVSDV----------YRK------------YQGSLERDMILDFDDLIMQTLVLFKESPD 206
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFD 526
+ YQ+ ++ I+VDE+QDT+ QY L ++LA + I +VGD DQSI+ + GA++
Sbjct: 207 TLEYYQNKFRYILVDEYQDTNEAQYELCRLLAKKYQNICVVGDADQSIYGWRGANMENIL 266
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
+F KD+ + K ++L +NYRST I++AA+++I HN R + K + TD G K+ +
Sbjct: 267 NFEKDYKSAKTVKLEQNYRSTGHILKAANAVIDHNENR-KAKRLWTDKGDGDKVHYYQAQ 325
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGV 645
++ + F++ KI E A Y AILYR + + E +P+ I G
Sbjct: 326 SDRDETRFVLSKIREEVK---AKKRKYQDFAILYRTNAQSRTMEETLVEANVPYQIVGGH 382
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSF 705
FY +K ++ I+A L+ D + R+ KR I S R +F
Sbjct: 383 KFYDRKEIKDIMAYLKLIANPSDSMSFNRIINV--------PKR---GIGTASVARLTAF 431
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYL 765
D G I + +L+ ++ S R+ + S + SV + +
Sbjct: 432 ----ADQMGGGIYEAARNVELS---------DVSSAAARKILAFSDQLASVISFAQTNTV 478
Query: 766 --LEQRAVVDFDGGKLLNEDNDLRSVLQYL--LADVTDFLST--KFTAAKEEGNVDQDKK 819
L +R + F K L +D + + L+ L ++ +FLS +F EE +D
Sbjct: 479 TDLTERVLEVFGYNKAL-KDEEAQGSLEAATRLENLQEFLSVTKRFDDNYEES---EDSS 534
Query: 820 GCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
+ L A + +S+++ + ++ VTL T+H +KGLE+ +VF+ + PL
Sbjct: 535 RLSDFL-AEVSLLSDQDD-------LETDDKVTLMTLHAAKGLEFPVVFLIGMEDNLFPL 586
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
+E +EEERRL YV +TRAR++L++ MM ++Q Q SRF+ EI
Sbjct: 587 GRAIK---DEDPNQLEEERRLAYVGITRAREELYLTSAYSRMMYGSFQHNQKSRFIDEI 642
>gi|431928849|ref|YP_007241883.1| ATP-dependent DNA helicase Rep [Pseudomonas stutzeri RCH2]
gi|431827136|gb|AGA88253.1| ATP-dependent DNA helicase Rep [Pseudomonas stutzeri RCH2]
Length = 669
Score = 219 bits (557), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 187/718 (26%), Positives = 335/718 (46%), Gaps = 109/718 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI +I+AMTFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAYLVQQCGIQARHIVAMTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+GS++ A A+ LT+STFH+ + + R ++ F I+ G
Sbjct: 60 AAREMKERVGSLLKGAEARGLTVSTFHNLGMNIIRKEYARMGYKPGFSIFDDGD------ 113
Query: 350 EAVRLLENEKILVVKRISTDMLTTD--GHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
+K + TD++ + G G ++ + ++
Sbjct: 114 -------------IKALLTDIMQKEYSGDDGADEIKNYI-----------------DSWK 143
Query: 408 RDGM--DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
D + D A A+ + P E + A + +Y L++ NA+D++DLI VKL
Sbjct: 144 NDLILPDEALANARNPKE------QTAAIVYLHYQRTLKAYNAVDFNDLILLPVKLFQEH 197
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISG 524
++ +++Q+ + ++VDE+QDT+A QY L+++L N+ T+VGDDDQSI+++ GA
Sbjct: 198 ADILEKWQNRIRYLLVDEYQDTNASQYLLVKLLVGMRNQFTVVGDDDQSIYAWRGARPEN 257
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
++D+ + K + L +NYRST I++ A+ LI +N + K + ++ HG +I +
Sbjct: 258 LMLLKEDYPSLKVVMLEQNYRSTSRILKCANILIANNPHVFE-KQLWSEMGHGDEIRVIR 316
Query: 585 CHNEDAQCAFIIDKIL-EHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH 643
NEDA+C + +IL EH + Y AILYR K+ + + +IP+ +
Sbjct: 317 TRNEDAECERVALEILTEHLR----TQRPYSDFAILYRGNYQAKLMELKLQHHQIPYRLS 372
Query: 644 -GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRK 702
G +F+ ++ V+ +++ R + DD + RV + +E ++ + ++ R
Sbjct: 373 GGTSFFARQEVKDLMSYFRLLVNPDDDNAFLRVIN---VPRREIGSTTLEKLGNYASERG 429
Query: 703 CSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
S +AA +I GA + + L + VR++ ++ I ++ +M
Sbjct: 430 ISMYAAADEIGLGAHLDSRYAER--------LARFKHWMDNVRQQCVVNEPIAAIRSM-- 479
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
V+D D L ++ V + +V F + +D+D+ G
Sbjct: 480 ---------VMDIDYENWLRQNASSDKVADARMGNVW------FLVDALKNTLDKDEDGD 524
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
+ + A I + R+ + + + V + T+H SKGLE+ V++ E +P
Sbjct: 525 MTIEDA-IGKLVLRDMLERQQEEEEGAEGVQMMTMHASKGLEFPSVYIIGFEEEILPHRS 583
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEIP 936
+ ++EEERRL YV +TRA++ L + + + + PSRFL E+P
Sbjct: 584 SI------ESDTIEEERRLAYVGITRAKRNLALTFAAKRKQYGEVIDCTPSRFLDELP 635
>gi|345017074|ref|YP_004819427.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344032417|gb|AEM78143.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 711
Score = 219 bits (557), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 218/725 (30%), Positives = 343/725 (47%), Gaps = 126/725 (17%)
Query: 245 LQSLNDQQLEAACGDMST--PLLIVAGPGSGKG---------------ISPSNILAMTFT 287
L SLND+Q EA M+T PLLI+AG GSGK +SPSNILA+TFT
Sbjct: 5 LGSLNDKQREAV---MTTEGPLLILAGAGSGKTRVLTRRIAYLIKEKKVSPSNILAITFT 61
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM+ R+ ++G +L +STFHS +++ R +K+ F+I+ Q+
Sbjct: 62 NKAAEEMKTRVEDLLG--YIGDLWVSTFHSACVRILRRDIDKIGYDRNFVIFDTTDQKAL 119
Query: 348 IIEAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
I E ++ L +EK VK + +NA+ SS
Sbjct: 120 IQECLKELNLSEKQYPVKTV--------------------LNAI-----SS--------- 145
Query: 407 ERDGMDVAKASGKTPAEFRKI-GDEIGAA----ILENYNGILRSCNALDYHDLISCSVKL 461
AK TP E+ + G+E + I + Y L+ NALD+ D+I +++L
Sbjct: 146 -------AKDKMVTPEEYIYVFGNEYRSKKISEIYKLYQKKLKKNNALDFDDIIIKTIEL 198
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGA 520
PEV YQ +K I+VDE+QDT+ QY + +LA R + +VGDDDQSI+ + GA
Sbjct: 199 FKESPEVLDFYQRKFKYIMVDEYQDTNMPQYHFVNMLAQKYRNLCVVGDDDQSIYGWRGA 258
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
D+ +F KD+ K I+L +NYRST+ I+EAA+ +I +N++R + K + T+N G +I
Sbjct: 259 DVKNILNFEKDYPEAKVIKLEQNYRSTKTILEAANHVIDNNIRRKK-KTLWTNNEEGERI 317
Query: 581 IIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKI 638
I+ E NE + F+I +I L+ N S+ AILYR + F+ A +I
Sbjct: 318 ILCELENEREEAEFVIQEIINLKERENR-----SFRDFAILYRTNAQSRAFEEALMRVRI 372
Query: 639 PFNIHG-VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKI 697
P+ + G + FY +K ++ IIA LR + DD ++R+ + ++ I+ ++
Sbjct: 373 PYKVVGALRFYDRKEIKDIIAYLRILVNPYDDISFKRIIN---VPKRGIGAATIEALEAT 429
Query: 698 STIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVA 757
+ + S A D AK+S K S L LE+I K + ++S VI
Sbjct: 430 ALEKDTSLFFAIDD---AKVSQRAKNSLLEFKE---FILELIDK--KDTMTVSEVIN--- 478
Query: 758 NMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQD 817
Y+LE+ G + + + + + ++ +FL+ AA E +D
Sbjct: 479 ------YILEE-------TGYIEELEKEESEQAEGRIENLNEFLN----AAYEFEESSED 521
Query: 818 KKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
K L+AF+ I+ + + SV L T+H +KGLE+ +VF+ E
Sbjct: 522 KS-----LEAFLSGITLVSDIDLAGEIGE---SVVLMTLHSAKGLEFPVVFMVGMEEGVF 573
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM---MDANWQLLQPSRFLKE 934
P F + YV +TR+++KL++ Y + Q SRF+ E
Sbjct: 574 PSFKSFTDEYELEEERRL-----CYVGITRSKEKLYLTYARRRNLYGKSQYSSYSRFISE 628
Query: 935 IPHHL 939
IP
Sbjct: 629 IPERF 633
>gi|406668134|ref|ZP_11075879.1| ATP-dependent DNA helicase pcrA [Bacillus isronensis B3W22]
gi|405384005|gb|EKB43459.1| ATP-dependent DNA helicase pcrA [Bacillus isronensis B3W22]
Length = 752
Score = 219 bits (557), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 207/735 (28%), Positives = 327/735 (44%), Gaps = 137/735 (18%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAA 291
+N QQ EA PLLI+AG GSGK + PS ILA+TFT AA
Sbjct: 11 GMNPQQAEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLVVEREVYPSKILAITFTNKAA 69
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEA 351
EMR+RI I+G T + + +STFHS +++ R + +++ + F I Q I
Sbjct: 70 REMRERIDGILGNGTTESMWVSTFHSMCVRILRRNIDRIGYSKSFSILDSSDQLTVI--- 126
Query: 352 VRLLENEKI--------LVVKRIST---DMLTTDGHFGYMRASLFMMNAMLFFSMSSFKL 400
+L+ + I ++ IS+ + +T DG F N +
Sbjct: 127 KNILKQDNIDPKKYDPRAILNTISSAKNECITVDG---------FEEN-----------M 166
Query: 401 CQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVK 460
+N FE+ I A + + Y LR +LD+ DLI +++
Sbjct: 167 NPHNPFEK----------------------IVAQVYKGYQKRLRQNQSLDFDDLIMLTIR 204
Query: 461 LLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNG 519
L P+V + YQ+ ++ I VDE+QDT+ QY L+Q+LA R I +VGD DQSI+ + G
Sbjct: 205 LFKEAPDVLEFYQNKFQYIHVDEYQDTNKSQYLLVQLLAKKFRNICVVGDSDQSIYRWRG 264
Query: 520 ADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSK 579
ADIS SF KD+ K I L +NYRST+ I++AA+S+I+ N R + K ++T+N G
Sbjct: 265 ADISNILSFEKDYKEAKVIMLEQNYRSTKRILQAANSVIEKNKDRYK-KVLRTENPEGEM 323
Query: 580 IIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIP 639
I + + NE + +++ I + + + + AILYR +V + + +
Sbjct: 324 IQLYKAGNEQDEAQYVVRTIQKLMKDEDYKLDDF---AILYRTNAQSRVMEDVLVKSNMN 380
Query: 640 FNI-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI-----DH 693
+ I G FY +K ++ ++A LR DD R+ E KR I D
Sbjct: 381 YQIVGGTKFYDRKEIKDLLAYLRLIANNDDDLSLARIIN--------EPKRAIGATSFDK 432
Query: 694 IDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI 753
+ + R S A ++ +SG S MI L R+ +S +
Sbjct: 433 MLVYAMERDRSIFDAMGELVFMGLSGKAATSAEN-------FYNMIRSLSDRQQELS--V 483
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
T + V +K Q +L + + + + L ++ +FL+ T A E +
Sbjct: 484 TEIVEEVLEKSGYRQ----------MLKAEKSIEA--ESRLENIEEFLTV--TQAFEARS 529
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
DQ + L D S E E + ++ L T+H +KGLE+ +VF+
Sbjct: 530 EDQSLVAFLTDLALIADIDSLDEEEKAK-------GTIILMTMHAAKGLEFPVVFIIGME 582
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLL 926
E P E + EERRL+YV TRA ++L++ ++ N
Sbjct: 583 ENIFPHSRSL-----ESEDEMAEERRLMYVGATRAEQRLYLSCAGSRTIFGRTGYN---- 633
Query: 927 QPSRFLKEIPHHLRE 941
PSRFL+EI ++ E
Sbjct: 634 APSRFLREIDENVLE 648
>gi|386586230|ref|YP_006082632.1| superfamily I DNA/RNA helicase [Streptococcus suis D12]
gi|353738376|gb|AER19384.1| superfamily I DNA/RNA helicase [Streptococcus suis D12]
Length = 759
Score = 219 bits (557), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 205/728 (28%), Positives = 331/728 (45%), Gaps = 115/728 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R ++ ++ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKERAYAL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRSLM- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+L+N + K +L T S + L FE
Sbjct: 121 --KRILKNLNLDPKKWSERSILGT-------------------ISNAKNDLIDDKAFEAQ 159
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D+ +I A Y LR A+D+ DLI +++L PEV
Sbjct: 160 AGDLYT--------------QIVAKCYTAYQKELRQSEAVDFDDLIMLTLRLFDQNPEVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ +++AA+ +I++N R + K + T N+ G I +E
Sbjct: 266 EKDYPESKVVLLEENYRSTKNVLQAANEVIENNRNR-RPKKLWTQNAQGDLITYYRARDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ + F+ +I + G A Y A+LYR + + A + IP+ + G F
Sbjct: 325 NDEAIFVAGQIDQLHREGKA----YKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKF 380
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIRKC 703
Y +K +R +I+ L D+ Y R+ E K+ V +D + +T
Sbjct: 381 YSRKEIRDVISYLNIIANPSDNISYERIV-------NEPKRGVGPGTVDKLRDFATSHSM 433
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
S + A+ DI + I G ++ + + L +++ V+ +V N
Sbjct: 434 SLLEASQDIMLSPIKGKAAQAVFDLANLLYNLRNQLDNL-----TVTQVVEAVLN----- 483
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
Q +D L N L + + + ++ +FLS T +E +V++++ G
Sbjct: 484 ----QTGYID-----ALAAQNTLEANAR--IENIQEFLSV--TKNFDEKDVEEEETGLDR 530
Query: 824 VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
+ + +D +T+ T+ + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 531 LTRFLLDLALIADTDDGDTESSE----VTLMTLHAAKGLEFPVVFLIGMEENVFPL---- 582
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEIP 936
E+ +EEERRL YV +TRA + L+ + +AN +LL QPSRF++EI
Sbjct: 583 -SRAAEEEDELEEERRLAYVGITRAEQTLY----LTNANSRLLFGRTNYNQPSRFIREIS 637
Query: 937 HHLREVQA 944
L + Q
Sbjct: 638 SDLLDYQG 645
>gi|229521119|ref|ZP_04410540.1| ATP-dependent DNA helicase Rep [Vibrio cholerae TM 11079-80]
gi|419835101|ref|ZP_14358549.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-46B1]
gi|421341818|ref|ZP_15792227.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-43B1]
gi|421352989|ref|ZP_15803327.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HE-45]
gi|423733449|ref|ZP_17706680.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-41B1]
gi|424007745|ref|ZP_17750702.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-44C1]
gi|229342004|gb|EEO07005.1| ATP-dependent DNA helicase Rep [Vibrio cholerae TM 11079-80]
gi|395946995|gb|EJH57653.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-43B1]
gi|395955448|gb|EJH66044.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HE-45]
gi|408632308|gb|EKL04769.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-41B1]
gi|408859242|gb|EKL98903.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-46B1]
gi|408867861|gb|EKM07214.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-44C1]
Length = 671
Score = 219 bits (557), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 204/735 (27%), Positives = 357/735 (48%), Gaps = 99/735 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ +GK ++ L +STFH+ L + R + L + F ++
Sbjct: 62 EMKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R +L ++S++K D +
Sbjct: 110 ---DQDQLALLKELTEKQL--DGDKDLLR--------LLLSTISNWK--------NDMLT 148
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
+A E ++ A E Y ++S NALD+ DLI V LL + EV Q +
Sbjct: 149 PPQAKAMAKGE----QQQLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEEVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L+++L R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F + K I+L +NYRST I+ AA+ LI +N Q K + ++ + G K+ + +NED +
Sbjct: 265 FPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQ-KALFSELAEGEKLKVILANNEDHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +I+ H + Y AILYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AERVTAEIIAHKF---LNRTEYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ ++E ++ + + +R S +A+
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PKREIGPATLEKLGSYANMRGKSLFTASF 437
Query: 711 DI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQR 769
++ +SG L R+ L I+ R ++ AV V ++ + +L E
Sbjct: 438 ELGLEQHLSG----RGLENLRRFTEWLVAIADNAERGNTVEAVRALVRDIRYEDWLYETS 493
Query: 770 AVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAF 828
A + + +V+D S + A EG N DQ +K LK
Sbjct: 494 ASP---------------KAAEMRMKNVSDLYS--WIVADLEGDNPDQQEK----TLKEV 532
Query: 829 IDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVN 888
+ ++ R+ R + +D+ ++V L T+H SKGLE+ V++ A E +P H+ +++
Sbjct: 533 VQRLTLRDMME-RGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILP--HQ--TSID 587
Query: 889 EKGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAE 945
E+ +VEEERRL+YV +TRA+++L F++ +L++P SRFL E+P E + +
Sbjct: 588 EE--NVEEERRLMYVGITRAQRELTFMVCKERRQFGELIKPTQSRFLDELPQEDIEWEVK 645
Query: 946 QSVQDQHENIPEGTA 960
+ Q E + +G A
Sbjct: 646 KKPVTQEERMAKGQA 660
>gi|417819043|ref|ZP_12465662.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HE39]
gi|423944424|ref|ZP_17733105.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HE-40]
gi|423973870|ref|ZP_17736650.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HE-46]
gi|340042933|gb|EGR03894.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HE39]
gi|408662462|gb|EKL33405.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HE-40]
gi|408666453|gb|EKL37240.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HE-46]
Length = 671
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 204/735 (27%), Positives = 357/735 (48%), Gaps = 99/735 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ +GK ++ L +STFH+ L + R + L + F ++
Sbjct: 62 EMKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R +L ++S++K D +
Sbjct: 110 ---DQDQLALLKELTEKQL--DGDKDLLR--------LLLSTISNWK--------NDMLT 148
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
+A E ++ A E Y ++S NALD+ DLI V LL + EV Q +
Sbjct: 149 PPQAKAMAKGE----QQQLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEEVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L+++L R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F + K I+L +NYRST I+ AA+ LI +N Q K + ++ + G K+ + +NED +
Sbjct: 265 FPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQ-KALFSELAEGEKLKVILANNEDHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +I+ H + Y AILYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AERVTAEIIAHKF---LNRTEYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ ++E ++ + + +R S +A+
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PKREIGPATLEKLGSYANMRGKSLFTASF 437
Query: 711 DI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQR 769
++ +SG L R+ L I+ R ++ AV V ++ + +L E
Sbjct: 438 ELGLEQHLSG----RGLDNLRRFTEWLVAIADNAERGNTVEAVRALVRDIRYEDWLYETS 493
Query: 770 AVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAF 828
A + + +V+D S + A EG N DQ +K LK
Sbjct: 494 ASP---------------KAAEMRMKNVSDLYS--WIVADLEGDNPDQQEK----TLKEV 532
Query: 829 IDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVN 888
+ ++ R+ R + +D+ ++V L T+H SKGLE+ V++ A E +P H+ +++
Sbjct: 533 VQRLTLRDMME-RGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILP--HQ--TSID 587
Query: 889 EKGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAE 945
E+ +VEEERRL+YV +TRA+++L F++ +L++P SRFL E+P E + +
Sbjct: 588 EE--NVEEERRLMYVGITRAQRELTFMVCKERRQFGELIKPTQSRFLDELPQEDIEWEVK 645
Query: 946 QSVQDQHENIPEGTA 960
+ Q E + +G A
Sbjct: 646 KKPVTQEERMAKGQA 660
>gi|260775078|ref|ZP_05883977.1| ATP-dependent DNA helicase Rep [Vibrio coralliilyticus ATCC
BAA-450]
gi|260608995|gb|EEX35155.1| ATP-dependent DNA helicase Rep [Vibrio coralliilyticus ATCC
BAA-450]
Length = 672
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 200/735 (27%), Positives = 351/735 (47%), Gaps = 99/735 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPNQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G +GK +K L +STFH+ L + + + L S F ++
Sbjct: 62 EMKERVGQTLGKNESKGLMVSTFHTLGLNIIKREYKALGLKSGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R L ++S++K N
Sbjct: 110 ---DQDQLALLKELTEKQL--DGDKDLLR--------QLLSTISNWK----NDMLTPEQA 152
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
A A G+ F A + Y +++ NALD+ DLI+ V LL T EV Q +
Sbjct: 153 KAYAQGEQQQLF--------AFCFDMYQKQMKAYNALDFDDLIALPVLLLRTNEEVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQ-ILASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L++ I+ R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QNRIRYLLVDEYQDTNTSQYELVKLIVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
+ + + I+L +NYRST I+ AA+ LI +N + K++ ++ G K+ + +E+ +
Sbjct: 265 YPSLRLIKLEQNYRSTSRILRAANILIANNPHVYE-KSLFSEIPDGEKLKVLLAKDEEHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +++ H + Y AILYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AERVTGELIAHKF---LNRTDYRDYAILYRGNHQSRLIEKSLMQNRVPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ +E ++ + + +R S +
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PRREIGPVTLEKLGSYANMRGKSLFECSF 437
Query: 711 DI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQR 769
+I +SG L R+ L I+ R ++ AV + V ++ + +L E
Sbjct: 438 EIGLEQHLSG----RGLENLRRFSQWLVKIADQAERGDTVEAVRSLVRDINYEDWLYETS 493
Query: 770 AVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAF 828
A + + +V+D S + A EG N DQ++K +K
Sbjct: 494 ASP---------------KAAEMRMKNVSDLYS--WIVADLEGDNYDQEEK----TIKEV 532
Query: 829 IDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVN 888
+ ++ R+ R + D+ ++V L T+H SKGLE+ V++ + E +P H+ +++
Sbjct: 533 VQRLTLRDMME-RGEEDDDSDAVQLMTLHASKGLEFPYVYLIGSEEGILP--HQ--TSID 587
Query: 889 EKGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAE 945
E +VEEERRL+YV +TRA+++L F + +L++P SRFL E+P E +
Sbjct: 588 E--DNVEEERRLMYVGITRAQRELTFTMCKERRQFGELIKPTQSRFLDELPFDDVEWEVN 645
Query: 946 QSVQDQHENIPEGTA 960
+ Q Q E + +G A
Sbjct: 646 KKPQTQEERMAKGQA 660
>gi|419955782|ref|ZP_14471904.1| DNA-dependent helicase II [Pseudomonas stutzeri TS44]
gi|387967378|gb|EIK51681.1| DNA-dependent helicase II [Pseudomonas stutzeri TS44]
Length = 729
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 192/703 (27%), Positives = 327/703 (46%), Gaps = 107/703 (15%)
Query: 260 MSTPL---LIVAGPGSGKG---------------ISPSNILAMTFTTAAASEMRDRIGSI 301
++ PL L++AG GSGK S +IL++TFT AA+EMR RI +
Sbjct: 20 VAAPLGRQLVLAGAGSGKTRVLVHRIAWLHQVERASLHSILSVTFTNKAAAEMRQRIEQL 79
Query: 302 VGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVRLLENEKIL 361
+ + L + TFH + +L R+H ++ F I Q+R
Sbjct: 80 L-HVNPQGLWVGTFHGLAHRLLRAHWQEANLQQNFQILDSDDQQR--------------- 123
Query: 362 VVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDVAKASGKTP 421
+VKR+ + L D R + + +NA K G P
Sbjct: 124 LVKRVIRE-LGLDEQRWPARQAQWWINAQ------------------------KDEGLRP 158
Query: 422 AEFRKIGDEIGAAILENYNGILRSC---NALDYHDLISCSVKLLSTFPEVFQEYQDSWKA 478
+ GD A L+ Y ++C +D+ +L+ ++ L P + + YQ ++
Sbjct: 159 QNIQAGGDLFLATQLKIYEAYEQACARAGVIDFSELLLRALDLWRNHPGLLEHYQRRFRH 218
Query: 479 IIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKE 537
++VDEFQDT+A+QY+ L++LA + +VGDDDQSI+ + GA I F +DF + +
Sbjct: 219 VLVDEFQDTNAVQYAWLRLLARGGESLMVVGDDDQSIYGWRGARIENLQQFSQDFPDAET 278
Query: 538 IRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIID 597
IRL +NYRST CI++AA++LI +N R K + TD G I + NE + ++++
Sbjct: 279 IRLEQNYRSTACILKAANALIANNQGRLG-KELWTDGCEGEPISLYAAFNEHDEARYVVE 337
Query: 598 KILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGVA-FYRKKVVRAI 656
I + +G S IAILYR +V + A KIP+ I+G F+ + ++
Sbjct: 338 SIEKAIRDG----LSRSEIAILYRSNAQSRVLEEALLREKIPYRIYGGQRFFERAEIKNA 393
Query: 657 IAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAK 716
+A LR +D RV L + ++ ++ + +++ ++ S +A G K
Sbjct: 394 MAYLRLIQTRHNDAALERVIN---LPARGIGEKTVEALRQLAREQELSLWAALHQAVGNK 450
Query: 717 ISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDG 776
+ S L +E+I L + + + S+A +V +EQ ++ +
Sbjct: 451 VVSGRAASALNG------FVELIDSLALKVEGMQ--LHSMAQLV-----IEQSGLLAY-- 495
Query: 777 GKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERE 836
++ Q + ++ + +S AA+ N + +++ L AF+D+ S
Sbjct: 496 -----HRDEKGEKAQARVENLEELVS----AARAFDNFNDEQEDEQTPLAAFLDHASLEA 546
Query: 837 TEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEE 896
E Q ++E+SV L T+H +KGLE+ +VF+ E P H+ + E+ +EE
Sbjct: 547 GEQ---QAGEHEDSVQLMTLHSAKGLEFPLVFLVGMEEGLFP--HKMS---LEEAGRLEE 598
Query: 897 ERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
ERRL YV +TRA ++L I Y + + + SRF++EIP
Sbjct: 599 ERRLAYVGITRAMQQLTITYAETRRLYGSETYNKISRFVREIP 641
>gi|384264248|ref|YP_005419955.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|387897175|ref|YP_006327471.1| DNA helicase II / ATP-dependent DNA helicase [Bacillus
amyloliquefaciens Y2]
gi|380497601|emb|CCG48639.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|387171285|gb|AFJ60746.1| DNA helicase II / ATP-dependent DNA helicase [Bacillus
amyloliquefaciens Y2]
Length = 739
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 213/738 (28%), Positives = 326/738 (44%), Gaps = 133/738 (18%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTF 286
++ L LN Q EA PLL++AG GSGK ++P NILA+TF
Sbjct: 6 NQLLSGLNPVQQEA-VKTTDGPLLLMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITF 64
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR 346
T AA EM++R+ SI+G A E+ ISTFHS +++ R +++ F I Q
Sbjct: 65 TNKAAREMKERVESILGPG-ADEIWISTFHSMCVRILRRDIDRIGINRNFSILDTADQLS 123
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
I + IL + I G S+SS
Sbjct: 124 VI---------KGILKERNIDPKKFDPRSILG---------------SISS--------- 150
Query: 407 ERDGMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLL 462
AK P EF K D++ + + +Y L +LD+ DLI ++KL
Sbjct: 151 -------AKNELIEPEEFAKTAGGYYDQVTSDVYTDYQKKLLKNQSLDFDDLIMTTIKLF 203
Query: 463 STFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGAD 521
PEV + YQ ++ I VDE+QDT+ QY L++ LA+ I +VGD DQSI+ + GAD
Sbjct: 204 ERVPEVLEFYQRKFQYIHVDEYQDTNRAQYLLVKQLAARLENICVVGDSDQSIYRWRGAD 263
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII 581
I+ SF KD+ + I L +NYRST+ I++AA+ +I++N R + KN+ T+N G K+
Sbjct: 264 IANILSFEKDYPSANVILLEQNYRSTKRILQAANEVIKNNSNR-KPKNLWTENDEGIKLS 322
Query: 582 IKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN 641
NE + F+ KI E S+G + IAILYR +V + + + +N
Sbjct: 323 YYSGDNEFGEGQFVAGKIYELNSSGRRKLS---DIAILYRTNAQSRVIEETLLKSGLNYN 379
Query: 642 I-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFK------AFLLLEKEEKKRVIDHI 694
I G FY +K ++ I+A LR DD + R+ LEK ++ +
Sbjct: 380 IVGGTKFYDRKEIKDILAYLRLVSNPDDDISFTRIVNVPKRGVGATSLEKIASYAAMNGM 439
Query: 695 DKISTIRKCSFISA------ACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPS 748
+++ FI A D FGA I LT + L E+ +++ +
Sbjct: 440 SMFQAVKQVDFIGVSAKAANALDGFGAMI------ENLTNMQDYLSITELTEEILEK--- 490
Query: 749 ISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAA 808
T M+ + +E Q L ++ +FLS T
Sbjct: 491 -----TEYREMLKAEKSIEA----------------------QSRLENIDEFLSV--TKN 521
Query: 809 KEEGNVDQDKKGCIN--VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDI 866
E+ + D+ + L A ID + ++E E +++VTL T+H +KGLE+ +
Sbjct: 522 FEQKSEDKSLVAFLTDLALIADIDQLDQKEEE------SGGKDAVTLMTLHAAKGLEFPV 575
Query: 867 VFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD---ANW 923
VF+ E P +EEERRL YV +TRA ++L++ M
Sbjct: 576 VFLMGMEEGVFPHSRSLMEE-----AEMEEERRLAYVGITRAEEELYLTNAKMRTLFGRT 630
Query: 924 QLLQPSRFLKEIPHHLRE 941
+ SRF++EIP L E
Sbjct: 631 NMNPESRFIREIPGDLLE 648
>gi|309792836|ref|ZP_07687278.1| UvrD/REP helicase [Oscillochloris trichoides DG-6]
gi|308225148|gb|EFO78934.1| UvrD/REP helicase [Oscillochloris trichoides DG6]
Length = 741
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 150/462 (32%), Positives = 227/462 (49%), Gaps = 70/462 (15%)
Query: 237 MPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNI 281
MPD+ L + ++A G P+L++AGPGSGK + P I
Sbjct: 1 MPDDLFTGLNPAQQRAVQAVDG----PVLVLAGPGSGKTRVLTHRVAYLIRALQVDPYQI 56
Query: 282 LAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGH 341
LA+TFT AA EM+ R+ +VG+ A LT+ TFHS + R + L R +F+IY
Sbjct: 57 LAVTFTNKAAREMKQRLVHLVGEEAAYALTVGTFHSLCARFLRRDSVHLGRERDFVIYDG 116
Query: 342 GQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
Q R + VR L ++ R AML +SS
Sbjct: 117 DDQERLMRRVVRELNLDEKKYAPR-----------------------AMLA-RISS---- 148
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISC 457
AK PAE+ ++ DEI A E Y +LR NALD+ DL+
Sbjct: 149 ------------AKNELVGPAEYARLNRTYLDEIVARCYERYQQLLRQSNALDFDDLLVE 196
Query: 458 SVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS--HNRITIVGDDDQSIF 515
V L P V YQ + ++VDE+QDT+ QY+L++ LA+ HN + VGD+DQSI+
Sbjct: 197 MVHLFEQHPAVLGHYQRRYAYLLVDEYQDTNRAQYTLVKQLAAQRHN-LFAVGDNDQSIY 255
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
+ GADI F +D+ + + I L +NYRST+ I++ A ++I K+ KN+ TDN
Sbjct: 256 GWRGADIRNILQFEQDYPDAQVILLEQNYRSTQAILDTAQAVIAGGGKQKHRKNLWTDNG 315
Query: 576 HGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
G+K+ + E +++DA+ +F+ D+I ++G SYG A++YR + + AF +
Sbjct: 316 SGTKVSLHEGYDQDAEASFVADEIARLVASGE---VSYGDCAVMYRVNAQSRALEEAFIQ 372
Query: 636 RKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVF 676
+ + I G FY +K +R ++A LR T D+ RV
Sbjct: 373 HGLRYQIIGGTRFYDRKEIRDVLAYLRLTANPYDNVALTRVL 414
Score = 60.1 bits (144), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 846 DNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAM 905
D ++VT T+HQ+KGLE+ +VF+ E +P N + LLYV M
Sbjct: 551 DKADAVTCITLHQAKGLEYPVVFLVGLEEGLLPHSRSLNEREQVEEERR-----LLYVGM 605
Query: 906 TRARKKLFILYVMMDANW---QLLQPSRFLKEIPHHLREVQAEQSVQDQHENIPEGTAQF 962
TRAR++L++ Y A + + +RFL +IP +E+ A+ Q + P ++ F
Sbjct: 606 TRARQRLYLCYAFRRATFGRSNITTRTRFLADIP---KELLAQTKQQRKTTAPPAQSSMF 662
Query: 963 T 963
T
Sbjct: 663 T 663
>gi|418294027|ref|ZP_12905928.1| ATP-dependent DNA helicase Rep [Pseudomonas stutzeri ATCC 14405 =
CCUG 16156]
gi|379065411|gb|EHY78154.1| ATP-dependent DNA helicase Rep [Pseudomonas stutzeri ATCC 14405 =
CCUG 16156]
Length = 669
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 186/718 (25%), Positives = 338/718 (47%), Gaps = 109/718 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI +I+AMTFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAYLVQHCGIQARHIVAMTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+GS++ A A+ LT+STFH+ + + R ++ F I+ G
Sbjct: 60 AAREMKERVGSLLKGAEARGLTVSTFHNLGMNIIRKEYARMGYKPGFSIFDDGD------ 113
Query: 350 EAVRLLENEKILVVKRISTDMLTTD--GHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
+K + TD++ + G G ++ + ++
Sbjct: 114 -------------IKALLTDIMQKEYSGDDGADEIKNYI-----------------DSWK 143
Query: 408 RDGM--DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
D + D A A+ + P E + A + +Y L++ NA+D++DLI VKL
Sbjct: 144 NDLILPDEALANARNPKE------QTAAIVYLHYQRTLKAYNAVDFNDLILLPVKLFQEH 197
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISG 524
++ +++Q+ + ++VDE+QDT+A QY L+++L N+ T+VGDDDQSI+++ GA
Sbjct: 198 ADILEKWQNRIRYLLVDEYQDTNASQYLLVKLLVGMRNQFTVVGDDDQSIYAWRGARPEN 257
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
++D+ + K + L +NYRST I++ A+ LI +N + K + ++ G +I +
Sbjct: 258 LMLLKEDYPSLKVVMLEQNYRSTSRILKCANILIANNPHVFE-KQLWSEMGVGDEIRVIR 316
Query: 585 CHNEDAQCAFIIDKIL-EHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH 643
NEDA+C + +IL EH + Y AILYR K+ + + +IP+ +
Sbjct: 317 TRNEDAECERVALEILTEHLR----TQRPYSDFAILYRGNYQAKLMELKLQHHQIPYRLS 372
Query: 644 -GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRK 702
G +F+ ++ V+ +++ R + DD + RV + +E ++ + ++ R
Sbjct: 373 GGTSFFARQEVKDLMSYFRLLVNPDDDNAFLRVIN---VPRREIGSTTLEKLGNYASERG 429
Query: 703 CSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
S +AA +I GA + + +L + ++ + VR + ++ I ++ +M
Sbjct: 430 ISMYAAADEIGLGAHLDSRYT-DRLARFKRWM-------DGVREQCVVNEPIAAIRSM-- 479
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
V+D D L ++ V + +V F + +D+D+ G
Sbjct: 480 ---------VMDIDYENWLRQNASSDKVADARMGNVW------FLVDALKSTLDKDEDGD 524
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
+ + A I + R+ + + + + V + T+H SKGLE+ V++ E +P
Sbjct: 525 MTIEDA-IGKLVLRDMLERQQEEEEGADGVQMMTMHASKGLEFPSVYIIGFEEEILPHRS 583
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEIP 936
+ ++EEERRL YV +TRA++ L + + + + PSRFL E+P
Sbjct: 584 SI------EADTIEEERRLAYVGITRAKRNLALTFAAKRKQYGEVIDCTPSRFLDELP 635
>gi|344995959|ref|YP_004798302.1| UvrD/REP helicase [Caldicellulosiruptor lactoaceticus 6A]
gi|343964178|gb|AEM73325.1| UvrD/REP helicase [Caldicellulosiruptor lactoaceticus 6A]
Length = 714
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 201/735 (27%), Positives = 341/735 (46%), Gaps = 133/735 (18%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GIS-PSNILAMTFT 287
++L+ LN+QQ EA PLL++AG GSGK G++ P NILA+TFT
Sbjct: 2 EWLKELNEQQKEAVLS-TEGPLLVLAGAGSGKTRVITYRIAYILNMGLANPGNILAITFT 60
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM++RI +V + E+ +STFH+ ++ R A + ++ F+I+ +++
Sbjct: 61 NKAADEMKERIKRLVSTQSFSEMWVSTFHAACARILRMEAHNIGFSNNFVIFDTQDRQQL 120
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
+ E +++ D D + + S F N ++
Sbjct: 121 LKECF-----------DKLNIDPEKLDIRYVSRQISNFK-NQLI---------------- 152
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIG--AAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
P++ + GD G + + YN +L+ NA D+ DL+ +V L T
Sbjct: 153 ------------GPSDVYRYGDVDGRVVEVYKLYNKLLKEYNAFDFDDLLYYTVVLFETN 200
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISG 524
P++ ++YQ+ +K I+VDE+QDT+ Q+ + +L+ H + +VGDDDQSI+SF GA+I
Sbjct: 201 PDILEKYQNKFKYILVDEYQDTNHAQFYFVYLLSQKHRNVCVVGDDDQSIYSFRGANIKN 260
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
F K F + K IRL +NYRST+ I+ AA+ +I+HN R + K + TDN+ G KI +
Sbjct: 261 ILEFEKVFSDAKVIRLEKNYRSTKTILSAANEVIKHNYYR-KSKRLWTDNTEGEKIFLYS 319
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG 644
+E + F+ + +G I +LYR F+ A +P+ + G
Sbjct: 320 AFDEVNEAEFVASSVKNLIESGVLP----SEIGVLYRTNAQSVNFENALSAYSVPYKVVG 375
Query: 645 -VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
+ FY +K ++ IIA LR DD R+ +R I + STI K
Sbjct: 376 ALRFYERKEIKDIIAYLRLITNPHDDLSLFRIINV--------PRRGIGN----STIEKI 423
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
+S ++ + +R++ +K +++ I+ + ++ +
Sbjct: 424 KALSEEYNVSAYTV--LLERAKFDFDKKTY-------------EKLNSFISLIEDLKAEA 468
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEE-----GNVDQ-- 816
ED + S ++ L+ D T +L + ++ EE N++Q
Sbjct: 469 ------------------EDLSVSSAIK-LVLDKTGYLESLLSSKSEEEFQRAKNIEQLI 509
Query: 817 ------DKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVA 870
+++ L+ F++ I+ +E TQ+ E V+L T+H +KGLE+++VF+
Sbjct: 510 SAAAIFEEENEEPTLQNFLNSIT-LSSEEEDTQK---EEKVSLMTVHAAKGLEFEVVFLT 565
Query: 871 KANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQ 927
E PLV +EEERRL YVA+TRA+K L + Y + + Q
Sbjct: 566 GLEEGLFPLVRAEEPVE--AEKELEEERRLCYVAITRAKKLLVLTYANNRRVFGRFSSRQ 623
Query: 928 PSRFLKEIPHHLREV 942
S F++EIP +V
Sbjct: 624 KSCFIEEIPQKYIQV 638
>gi|262404900|ref|ZP_06081454.1| ATP-dependent DNA helicase Rep [Vibrio sp. RC586]
gi|262348984|gb|EEY98123.1| ATP-dependent DNA helicase Rep [Vibrio sp. RC586]
Length = 671
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 206/738 (27%), Positives = 355/738 (48%), Gaps = 99/738 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKYVSGPCLVLAGAGSGKTRVITNKMAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ +GK ++ L +STFH+ L + R + L + F ++
Sbjct: 62 EMKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R +L ++S++K D +
Sbjct: 110 ---DQDQLALLKELTEKQL--DGDKDLLR--------LLLSTISNWK--------NDMLT 148
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
+A E ++ A E Y ++S NALD+ DLI V LL + EV Q +
Sbjct: 149 PPQAKAMAKGE----QQQVFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSSEEVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT++ QY L+++L R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QNRIRYLLVDEYQDTNSSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F + K I+L +NYRST I+ AA+ LI +N Q K + ++ + G K+ + +NED +
Sbjct: 265 FPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQ-KALFSELAEGEKLKVILANNEDHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +I+ H + Y AILYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AERVTAEIIAHKF---LNRTEYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ ++E ++ + + +R S +A+
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PKREIGPATLEKLGSYANMRGKSLFAAS- 436
Query: 711 DIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRA 770
F + L R+ L I+ R ++ AV RA
Sbjct: 437 --FELGLEQHLGGRGLDNLRRFTEWLVAIADNAERGNTVEAV----------------RA 478
Query: 771 VV-DFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAF 828
+V D L E + + + +V+D S + A EG N DQ +K LK
Sbjct: 479 LVRDIRYDDWLYETSSSPKAAEMRMKNVSDLYS--WIVADLEGDNPDQQEK----TLKEV 532
Query: 829 IDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVN 888
+ ++ R+ R + +D+ ++V L T+H SKGLE+ V++ A E +P H+ +++
Sbjct: 533 VQRLTLRDMME-RGEENDDSDAVQLMTLHASKGLEFPFVYLIGAEEGILP--HQ--TSID 587
Query: 889 EKGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAE 945
E+ +VEEERRL+YV +TRA+++L FI+ +L++P SRFL E+P E + +
Sbjct: 588 EE--NVEEERRLMYVGITRAQRELTFIVCKERRQFGELIKPSQSRFLDELPQDDIEWEVK 645
Query: 946 QSVQDQHENIPEGTAQFT 963
+ Q E + +G A
Sbjct: 646 KKPVTQEERMAKGQAHIA 663
>gi|254853669|ref|ZP_05243017.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL R2-503]
gi|300765955|ref|ZP_07075927.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL N1-017]
gi|404281369|ref|YP_006682267.1| ATP-dependent DNA helicase [Listeria monocytogenes SLCC2755]
gi|404287187|ref|YP_006693773.1| ATP-dependent DNA helicase [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|258607048|gb|EEW19656.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL R2-503]
gi|300513341|gb|EFK40416.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL N1-017]
gi|404228004|emb|CBY49409.1| ATP-dependent DNA helicase [Listeria monocytogenes SLCC2755]
gi|404246116|emb|CBY04341.1| ATP-dependent DNA helicase [Listeria monocytogenes serotype 7 str.
SLCC2482]
Length = 733
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 209/738 (28%), Positives = 330/738 (44%), Gaps = 125/738 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q A PLLI+AG GSGK G++P NILA+TFT
Sbjct: 9 VDGLNPEQ-RRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTNK 67
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ RIG+++G A+ + ISTFHS +++ R +++ F I G + ++I
Sbjct: 68 AAREMKSRIGNLMG-GEAESIWISTFHSMCVRILRRDIDRIGYERNFTIL-DGSDQLSVI 125
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ IL K + G + S+S+ K N+
Sbjct: 126 KG--------ILKEKNVDPKKFEPRG---------------ILASISNAK----NELITA 158
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
+ +ASG D++ + E Y L+ ALD+ DLI +++L P+V
Sbjct: 159 SEYIKEASG--------FYDKMVGEVYEKYEKKLKKNQALDFDDLIMVTIQLFERVPDVL 210
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ ++ I VDE+QDT+ QY L++ LAS + +VGD DQSI+ + GADIS SF
Sbjct: 211 EYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRFKNLCVVGDSDQSIYGWRGADISNIMSF 270
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N K I L NYRST+ I+EAA+ +I++N R + K + T N+ G KI + E
Sbjct: 271 EKDYPNAKTILLEENYRSTKRILEAANRVIENNGNR-KPKKLWTSNAEGKKIFYHKALTE 329
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ A+++ KI E +N + + AILYR +V + F + + + + G F
Sbjct: 330 KEEAAYVVMKIQEEVNNSNRPLSDF---AILYRTNAQSRVMEEYFMKSNMAYTMVGGTKF 386
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFIS 707
Y +K ++ I+A LR DD R+ + ++ +D ++ ++T S
Sbjct: 387 YDRKEIKDILAYLRLISNNEDDISLTRIVN---VPKRGVGPGTLDKLNNVATTYDLSLFE 443
Query: 708 AACDIFGAKISGTFKRS---------QLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
I A IS + TQ + L E++ +++ + T
Sbjct: 444 VLNRIELAGISPKISKDLVAFHDLIRGFTQMQDFLSVTELVEEILEK--------TGYRA 495
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
M+ + +E Q L ++ +FLS KE D
Sbjct: 496 MLKNERTIEA----------------------QTRLENIDEFLSVTQNFEKE-----NDD 528
Query: 819 KGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
K I L D + + + +VTL T+H +KGLE+ +VF+ E P
Sbjct: 529 KTLIAFL---TDLALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFP 585
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFI-------LYVMMDANWQLLQPSRF 931
+ + +EEERRL YV +TRA ++LF+ LY +N Q SRF
Sbjct: 586 -----HSRAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRMLYGRPSSN----QESRF 636
Query: 932 LKEIPHHLREVQAEQSVQ 949
+ EIP L E+ E ++
Sbjct: 637 IGEIPRDLLELGNENKLK 654
>gi|302188185|ref|ZP_07264858.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. syringae
642]
Length = 669
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 190/726 (26%), Positives = 324/726 (44%), Gaps = 125/726 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+AMTFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ + LT+STFH+ L + R +L F I+
Sbjct: 60 AAREMKERVGTLLKGGEGRGLTVSTFHNLGLNIIRKEHTRLGYKPGFSIFDETD------ 113
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
VK + TD++ Q D
Sbjct: 114 -------------VKALMTDIM------------------------------QKEYSGDD 130
Query: 410 GMDVAK---ASGKT----PAEF----RKIGDEIGAAILENYNGILRSCNALDYHDLISCS 458
G+D K S K PAE R ++ A + +Y L++ NA+D+ DLI
Sbjct: 131 GVDEIKNMIGSWKNDLILPAEALENARNPKEQTAAIVYTHYQRTLKAYNAVDFDDLILLP 190
Query: 459 VKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSF 517
VKL ++ +++Q+ + ++VDE+QDT+A QY L+++L + ++ T+VGDDDQSI+++
Sbjct: 191 VKLFQEHADILEKWQNKVRYLLVDEYQDTNASQYLLVKLLIGTRHQFTVVGDDDQSIYAW 250
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GA + D+ + K + L +NYRST I+ A+ LI +N + K + ++ HG
Sbjct: 251 RGARPENLMLLKDDYPSLKVVMLEQNYRSTSRILRCANVLISNNPHAFE-KQLWSEMGHG 309
Query: 578 SKIIIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
+I + C NEDA+ + +I L ++ P Y AILYR K+ + +
Sbjct: 310 DEIRVIRCRNEDAEAERVAMEILTLHLRTDRP-----YSDFAILYRGNYQAKLIELKLQH 364
Query: 636 RKIPFNIHGV-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
++P+ + G +F+ ++ V+ ++A R + DD + RV + +E ++ +
Sbjct: 365 HQVPYRLSGGNSFFGRQEVKDLMAYFRLLVNPDDDNAFLRVIN---VPRREIGSTTLEKL 421
Query: 695 DKISTIRKCSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI 753
+T RK S +A +I G + + +L R + + V
Sbjct: 422 GNYATERKVSMYAATDEIGLGEHLDSRY-----------------TDRLQRFKRWMDGVR 464
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
A P L + V+D D L +++ Y +++V F +
Sbjct: 465 QQCAQNDPIAAL--RSMVMDIDYENWLRQNSSSEKAADYRMSNVW------FLIEALKNT 516
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+++D++G + + +A I + R+ + + D V + T+H SKGLE+ VF+
Sbjct: 517 LEKDEEGGMTIEEA-IGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGME 575
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSR 930
E +P + ++EEERRL YV +TRAR+ L + + + PSR
Sbjct: 576 EEILPHRSSI------EADTIEEERRLAYVGITRARQTLAFTFAAKRKQYGEIIDCAPSR 629
Query: 931 FLKEIP 936
FL E+P
Sbjct: 630 FLDELP 635
>gi|417809806|ref|ZP_12456487.1| ATP-dependent DNA helicase [Lactobacillus salivarius GJ-24]
gi|335350730|gb|EGM52226.1| ATP-dependent DNA helicase [Lactobacillus salivarius GJ-24]
Length = 740
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 204/719 (28%), Positives = 337/719 (46%), Gaps = 104/719 (14%)
Query: 244 YLQSLNDQQLEAA-CGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFT 287
+L +ND+Q EA C + PLLI+AG GSGK G++P NILA+TFT
Sbjct: 2 FLSGMNDKQSEAVLCTE--GPLLIMAGAGSGKTRVLTHRVAYLIEEKGVNPWNILAITFT 59
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EMR+R+ +++G+ A+++ +STFH+ +++ R AEK+ F I +QR
Sbjct: 60 NKAAREMRERVNNLMGEG-AEDIWVSTFHALCVRILRRDAEKIGFNRSFTIASTSEQR-- 116
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
++K++ D L D RA L +++ +
Sbjct: 117 -------------TLMKQVLND-LNIDTKKYDPRAILSVISNA----------------K 146
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
D +D + + F +I + A E Y L + A+D+ DLI +++L + PE
Sbjct: 147 NDLLDPKDYAQQANGPFEEI---VSKAYFE-YQNQLANNQAMDFDDLIMQTIRLFNESPE 202
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFD 526
+ YQ + I VDE+QDT+ QY L+ LA R + +VGD DQSI+ + GA++
Sbjct: 203 TLEFYQRKFHYIHVDEYQDTNEAQYELVNKLARKYRNLCVVGDADQSIYGWRGANMENIM 262
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
+F +D+ + I+L +NYRST+ I+ AA+++I++NV R K + TDN G KI +
Sbjct: 263 NFEEDYPDATVIKLEQNYRSTKNILAAANNVIENNVNRKD-KTLWTDNKQGDKIHYYRAN 321
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGV- 645
N + + +++ KI E N YG AILYR ++ + F + IP+ + G
Sbjct: 322 NANEEAYYVVKKIQEQIRNNGR---HYGDFAILYRTNAQSRIIEETFVKTNIPYKLVGAH 378
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSF 705
FY +K + +A LR D + R+ E KR I + + +R S
Sbjct: 379 KFYDRKEIMDTLAYLRLVTNPADSMSFERIVN--------EPKRSIGSV-TVGKLRTFSQ 429
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPS--ISAVITSVANMVPQK 763
I + +K S ++ EMI +L + S ++ V + ++ K
Sbjct: 430 IHGMSMLEASK-SAALAGVSAKASNELEKFAEMIEQLYEYQKSHNVTEVTERILDVTGYK 488
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
L++ L N L ++ ++L T K+ DQD +
Sbjct: 489 ANLQREDT--------LENRNRLENLEEFL------------TVTKQ---FDQDWEPEDE 525
Query: 824 VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
F+D++++ + + + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 526 ESDPFVDFLADLALVSDQDSVEEEPDEVTLMTLHAAKGLEFPVVFLMGLEEGIFPLSR-- 583
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFI---LYVMMDANWQLLQPSRFLKEIPHHL 939
AV ++ +EEERRL YV +TRA ++L++ + M+ Q SRF++EI L
Sbjct: 584 --AVMDE-NELEEERRLAYVGITRAEEELYLTNSISRMLYGKSQNNPASRFIEEIDEEL 639
>gi|168483162|ref|ZP_02708114.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
CDC1873-00]
gi|418175913|ref|ZP_12812509.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA41437]
gi|418218844|ref|ZP_12845511.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae NP127]
gi|172043466|gb|EDT51512.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
CDC1873-00]
gi|353842019|gb|EHE22069.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA41437]
gi|353875499|gb|EHE55351.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae NP127]
Length = 763
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 207/739 (28%), Positives = 331/739 (44%), Gaps = 135/739 (18%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA LLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGSLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLMK 121
Query: 350 EAVRLLE------NEKILV--VKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
++ L NE+ ++ + D++
Sbjct: 122 RILKQLNLDPKKWNERTILGTISNAKNDLID----------------------------- 152
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
DVA A A+ + +I A Y LR ++D+ DLI +++L
Sbjct: 153 ----------DVAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRL 197
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGA 520
P+V YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GA
Sbjct: 198 FDQNPDVLTYYQQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGA 257
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
D+ F KD+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I
Sbjct: 258 DMQNILDFEKDYPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQI 316
Query: 581 IIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKI 638
+ +E + F+ I L + N + A+LYR + + A + I
Sbjct: 317 VYYRADDELDEAVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNI 371
Query: 639 PFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VID 692
P+ + G FY +K +R IIA L D+ + R+ E KR ++
Sbjct: 372 PYTMVGGTKFYSRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGLGTVE 423
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAV 752
I + ++ S + A+ +I + I G +S +L E + L SI+ +
Sbjct: 424 KIRDFANLQNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITEL 478
Query: 753 ITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG 812
+ SV LE+ VD +LN L S + + ++ +FLS +
Sbjct: 479 VESV---------LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTT 521
Query: 813 NVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKA 872
+V +++ G + + D +T+ + + VTL T+H +KGLE+ +VF+
Sbjct: 522 DVTEEETGLDKLSRFLNDLALIADTDSGSQETSE----VTLMTLHAAKGLEFPVVFLIGM 577
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL------ 926
E PL E +EEERRL YV +TRA K ILY + +AN +LL
Sbjct: 578 EENVFPLSR-----ATEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNY 628
Query: 927 -QPSRFLKEIPHHLREVQA 944
+P+RF+ EI L E Q
Sbjct: 629 NRPTRFINEISSDLLEYQG 647
>gi|331091397|ref|ZP_08340236.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
2_1_46FAA]
gi|330404261|gb|EGG83808.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
2_1_46FAA]
Length = 741
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 147/451 (32%), Positives = 231/451 (51%), Gaps = 68/451 (15%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAA 291
+LN +Q EA PLLI+AG GSGK G++P NILA+TFT AA
Sbjct: 6 TLNTEQKEAVL-HTEGPLLILAGAGSGKTRVLTHRISYLIEEKGVNPWNILAITFTNKAA 64
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEA 351
EMR+R+ IVG + + + +STFHS +++ R H ++L + F IY Q+ + +
Sbjct: 65 GEMRERVDKIVGFGS-ESIWVSTFHSMCVRILRRHIDRLGYDTNFTIYDTDDQKTLMKDV 123
Query: 352 VRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
++L+ + + +R M +SS
Sbjct: 124 CKMLQIDTKVYKER------------------------MFLGEISS-------------- 145
Query: 412 DVAKASGKTPAEFR--KIGDEIG---AAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
AK TP E+ GD + A + + Y LR NALD+ DL+ +V+L T
Sbjct: 146 --AKNELVTPEEYELNAAGDYVKGKVAKVYKEYEKQLRDNNALDFDDLLLKTVQLFQTQA 203
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGF 525
+V YQ+ ++ I+VDE+QDT+ +Q+ L++ILA + + +VGDDDQSI+ F GA+I
Sbjct: 204 DVLDYYQERFRYIMVDEYQDTNTVQFQLIRILAGKYKNLCVVGDDDQSIYKFRGANIQNI 263
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
+F K F + + I+L +NYRST I+ AA+++I+HN R K + TDN G KI ++
Sbjct: 264 LNFEKVFADARVIKLEQNYRSTANILNAANAVIRHNTGRKD-KTLWTDNEEGEKIGFRQF 322
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHG 644
+ +I+D+I + S +Y AILYR ++F+ F IP+ I G
Sbjct: 323 DTAFDEAEYIVDEIRKGVSGKG---YTYSDNAILYRTNAQSRMFEEKFVAANIPYKIIEG 379
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRV 675
V FY ++ ++ +++ L+T G DD RR+
Sbjct: 380 VNFYARREIKDLLSYLKTIDNGKDDLAVRRI 410
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 8/118 (6%)
Query: 846 DNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAM 905
+N + V L T+H +KGLE+ V++A + P + + +EEERRL YV +
Sbjct: 547 ENSDYVVLMTLHSAKGLEFPNVYLAGMEDGLFP---SYMTITADDPMEIEEERRLCYVGI 603
Query: 906 TRARKKLFILYV---MMDANWQLLQPSRFLKEIPHHLREVQAEQSVQDQHENIPEGTA 960
TRARK L + M+ Q + SRFLKEIP L + V+ ++P+ TA
Sbjct: 604 TRARKHLTMTCARRRMIHGETQYNKLSRFLKEIPLEL--LDTGNIVEKNTMDVPKQTA 659
>gi|343516236|ref|ZP_08753277.1| ATP-dependent DNA helicase Rep [Vibrio sp. N418]
gi|342796656|gb|EGU32329.1| ATP-dependent DNA helicase Rep [Vibrio sp. N418]
Length = 672
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 194/728 (26%), Positives = 345/728 (47%), Gaps = 96/728 (13%)
Query: 254 EAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAASEMRDRI 298
+ A +S P L++AG GSGK G NI A+TFT AA EM++R+
Sbjct: 8 DQAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAREMKERV 67
Query: 299 GSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVRLLENE 358
G +GK AK L +STFH+ L + + + L + F ++ + +
Sbjct: 68 GQTLGKQEAKGLMVSTFHTLGLNIIKREHKHLGLKAGFSLFD---------------DQD 112
Query: 359 KILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDVAKASG 418
++ ++K ++ L DG +R L ++S++K D + +A
Sbjct: 113 QLALLKELTETQL--DGDKDLLR--------QLLSAISNWK--------NDMLTPEQAKA 154
Query: 419 KTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKA 478
E ++ A + Y +R+ NALD+ DLI+ V LL T E +Q+ +
Sbjct: 155 YAQGE----QQQLFAFCFDMYQKQMRAYNALDFDDLIALPVLLLRTNEEARTRWQNRIRY 210
Query: 479 IIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKE 537
++VDE+QDT+ QY L+++L R+T+VGDDDQSI+S+ GA +D+ N K
Sbjct: 211 LLVDEYQDTNTSQYELVRLLVGQRERLTVVGDDDQSIYSWRGAKPQNLVLLGQDYPNLKL 270
Query: 538 IRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIID 597
I+L +NYRST I+ A+ LI +N + K++ ++ G K+ + NED + +
Sbjct: 271 IKLEQNYRSTNRILRCANILIANNPHVYE-KSLFSELPDGEKLKVLLAKNEDHEAERVTG 329
Query: 598 KILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRKKVVRAI 656
+I+ H + +Y AILYR ++ + + + ++P+ + G +F+ + ++ I
Sbjct: 330 EIIAHKF---LNRTNYRDYAILYRGNHQSRLIEKSLMQNRVPYKLSGGTSFFARAEIKDI 386
Query: 657 IAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAK 716
+A L+ + DD + R+ ++E ++ + + +R S A+ F
Sbjct: 387 MAYLKVLVNPDDDNAFLRIVNT---PKREIGPVTLEKLGSYANMRGKSLFEAS---FEMG 440
Query: 717 ISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDG 776
+ L ++ L I+ R ++ AV + V ++ + +L E +
Sbjct: 441 LEQHLTGRGLENLQRFTTWLVKIADQAERGDTVEAVRSLVRDIHYEDWLYETSSSP---- 496
Query: 777 GKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAFIDYISER 835
+ + +V+D S + A EG N DQ++K LK + ++ R
Sbjct: 497 -----------KAAEMRMKNVSDLYS--WIVADLEGDNYDQEEKS----LKEVVQRLTLR 539
Query: 836 ETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVE 895
+ R + ++ ++V L T+H SKGLE+ V++ + E +P H+ +++E +VE
Sbjct: 540 DMME-RNEEDEDSDAVQLMTLHASKGLEFPYVYLLGSEEGILP--HQ--TSIDED--NVE 592
Query: 896 EERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAEQSVQDQH 952
EERRL+YV +TRA+K+L F + +LL+P SRFL E+P E + + Q
Sbjct: 593 EERRLMYVGITRAQKELTFTMCRERRQYGELLKPTQSRFLDELPFDDVEWEQTKKPVTQE 652
Query: 953 ENIPEGTA 960
E + +G A
Sbjct: 653 ERMAKGQA 660
>gi|419827864|ref|ZP_14351356.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-1A2]
gi|419831525|ref|ZP_14354994.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-61A2]
gi|422305579|ref|ZP_16392778.1| ATP-dependent DNA helicase Rep [Vibrio cholerae CP1035(8)]
gi|422915897|ref|ZP_16950251.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-02A1]
gi|423810965|ref|ZP_17714844.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-55C2]
gi|423846233|ref|ZP_17718617.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-59A1]
gi|423878399|ref|ZP_17722247.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-60A1]
gi|423996308|ref|ZP_17739585.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-02C1]
gi|424015011|ref|ZP_17754869.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-55B2]
gi|424018123|ref|ZP_17757935.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-59B1]
gi|424623501|ref|ZP_18061987.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-50A1]
gi|424628073|ref|ZP_18066394.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-51A1]
gi|424632023|ref|ZP_18070153.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-52A1]
gi|424635111|ref|ZP_18073143.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-55A1]
gi|424638933|ref|ZP_18076840.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-56A1]
gi|424647189|ref|ZP_18084877.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-57A1]
gi|443526060|ref|ZP_21092162.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-78A1]
gi|341641594|gb|EGS66119.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-02A1]
gi|408017306|gb|EKG54818.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-50A1]
gi|408022848|gb|EKG60038.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-52A1]
gi|408028153|gb|EKG65064.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-56A1]
gi|408028435|gb|EKG65326.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-55A1]
gi|408038394|gb|EKG74739.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-57A1]
gi|408059900|gb|EKG94635.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-51A1]
gi|408624228|gb|EKK97177.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-1A2]
gi|408628501|gb|EKL01239.1| ATP-dependent DNA helicase Rep [Vibrio cholerae CP1035(8)]
gi|408637241|gb|EKL09310.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-55C2]
gi|408644855|gb|EKL16528.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-60A1]
gi|408646134|gb|EKL17755.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-59A1]
gi|408652412|gb|EKL23627.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-61A2]
gi|408855298|gb|EKL95005.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-02C1]
gi|408862700|gb|EKM02204.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-55B2]
gi|408871244|gb|EKM10487.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-59B1]
gi|443455527|gb|ELT19292.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HC-78A1]
Length = 671
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 204/735 (27%), Positives = 357/735 (48%), Gaps = 99/735 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ +GK ++ L +STFH+ L + R + L + F ++
Sbjct: 62 EMKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R +L ++S++K D +
Sbjct: 110 ---DQDQLALLKELTEKQL--DGDKDLLR--------LLLSTISNWK--------NDMLT 148
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
+A E ++ A E Y ++S NALD+ DLI V LL + EV Q +
Sbjct: 149 PPQAKAIAKGE----QQQLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEEVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L+++L R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F + K I+L +NYRST I+ AA+ LI +N Q K + ++ + G K+ + +NED +
Sbjct: 265 FPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQ-KALFSELAEGEKLKVILANNEDHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +I+ H + Y AILYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AERVTAEIIAHKF---LNRTEYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ ++E ++ + + +R S +A+
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PKREIGPATLEKLGSYANMRGKSLFTASF 437
Query: 711 DI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQR 769
++ +SG L R+ L I+ R ++ AV V ++ + +L E
Sbjct: 438 ELGLEQHLSG----RGLENLRRFTEWLVAIADNAERGNTVEAVRALVRDIRYEDWLYETS 493
Query: 770 AVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAF 828
A + + +V+D S + A EG N DQ +K LK
Sbjct: 494 ASP---------------KAAEMRMKNVSDLYS--WIVADLEGDNPDQQEK----TLKEV 532
Query: 829 IDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVN 888
+ ++ R+ R + +D+ ++V L T+H SKGLE+ V++ A E +P H+ +++
Sbjct: 533 VQRLTLRDMME-RGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILP--HQ--TSID 587
Query: 889 EKGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAE 945
E+ +VEEERRL+YV +TRA+++L F++ +L++P SRFL E+P E + +
Sbjct: 588 EE--NVEEERRLMYVGITRAQRELTFMVCKERRQFGELIKPTQSRFLDELPQEDIEWEVK 645
Query: 946 QSVQDQHENIPEGTA 960
+ Q E + +G A
Sbjct: 646 KKPVTQEERMAKGQA 660
>gi|399889768|ref|ZP_10775645.1| ATP-dependent superfamily I DNA helicase, PCRA [Clostridium arbusti
SL206]
Length = 764
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 200/722 (27%), Positives = 333/722 (46%), Gaps = 117/722 (16%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EAA + P+L++AG GSGK I PS ILA+TFT AA
Sbjct: 7 LNKEQYEAAIA-VDGPVLVLAGAGSGKTRVLTYRIANMIENLNIYPSQILAITFTNKAAQ 65
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ +VG A+ + +STFHS +++ R +K+ F IY Q+ I + +
Sbjct: 66 EMKERVRELVGDE-AENMWVSTFHSSCVRILRREIDKIGYNKNFTIYDSADQKTLINQCI 124
Query: 353 RLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
+ + N+K + K I + + G + +L S +F+L +
Sbjct: 125 KEVGINDKDITDKEIISKI-------GDQKDNLISAQEYKRTSEKNFRLNRI-------- 169
Query: 412 DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQE 471
A + Y L+ NALD+ DLI +V+L +V Q
Sbjct: 170 ---------------------AEVYLLYQKKLKENNALDFDDLIFKTVELFKKHEDVLQF 208
Query: 472 YQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRK 530
YQ +K I++DE+QDT+ QY L ++LA H + +VGDDDQ I+ + GADI F K
Sbjct: 209 YQRKFKYIMIDEYQDTNKAQYELARLLAKQHKNLCVVGDDDQCIYGWRGADIRNILDFEK 268
Query: 531 DFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDA 590
D+ N K I+L NYRS I++AA+ +I++N K ++T + G+KI + +++
Sbjct: 269 DYANAKVIKLEENYRSKGNILKAANGVIKNNPHE-HFKMLRTRSEDGNKIRLYRSYSDME 327
Query: 591 QCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFYR 649
+ F+ ++I + +G Y AILYR ++F+ F +R +P+ I G+ FY
Sbjct: 328 EVEFVCNEIKKAVDSGEK---KYKDFAILYRTNAQSRLFEDVFMKRHLPYRIIGGLKFYD 384
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIST-IRKCSFISA 708
+K ++ I+A L+ D+ +RV + ++ +D I++ S I +C + S
Sbjct: 385 RKEIKDIMAYLKLICNPLDNISLKRVIN---VPKRGIGGTTVDKIERFSNEIEECVY-SC 440
Query: 709 ACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQ 768
DI I G R+ + V +I+ + R+ I V T + ++ Q LE+
Sbjct: 441 LLDI--QTIPGLTARNVSAINKFV----SIINSFMIRKEEIK-VSTLIEELLGQTGYLEE 493
Query: 769 RAVVDFDGGKLLNEDNDLRSV-----LQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
L + ND++ + LQ L++ DF N +DK
Sbjct: 494 -----------LKKSNDVQDITRIENLQELVSAAVDF-----------ENNSEDKS---- 527
Query: 824 VLKAFIDYISERETEHFRTQRHD-NENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
L +F+ E+ +D + +S + T+H +KGLE+ +VF+ P
Sbjct: 528 -LASFL----EKTALVADVDNYDVDSDSTVMMTVHSAKGLEFPVVFMVGMENGIFP---- 578
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM---MDANWQLLQPSRFLKEIPHHL 939
A +EE RRL YV +TRA+++L++ + S F+ E+P L
Sbjct: 579 -GAASLTDFAEMEESRRLAYVGITRAKEQLYMTSAQTRRVFGRTVAYGESDFIAEVPKEL 637
Query: 940 RE 941
+E
Sbjct: 638 KE 639
>gi|402701266|ref|ZP_10849245.1| ATP-dependent DNA helicase Rep [Pseudomonas fragi A22]
Length = 669
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 183/719 (25%), Positives = 327/719 (45%), Gaps = 111/719 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+AMTFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ K + LT+ TFH+ L + R +L F I+
Sbjct: 60 AAREMKERVGTLLKKGEGRGLTVCTFHNLGLNIIRKEHARLGYKPGFSIFDEAD------ 113
Query: 350 EAVRLLENEKILVVKRISTDML----TTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNK 405
VK + TD++ + D ++ + L + +
Sbjct: 114 -------------VKALMTDIMQKEYSGDDGVDEIKNMIGSWKNDLILPPQALE------ 154
Query: 406 FERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+ + P E + A + +Y L++ NA+D+ DLI VKL
Sbjct: 155 -----------NARNPKE------QTAAIVYTHYQRTLKAYNAVDFDDLILLPVKLFEEH 197
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQ-ILASHNRITIVGDDDQSIFSFNGADISG 524
++ +++Q+ + ++VDE+QDT+A QY L++ ++ + N+ T+VGDDDQSI+++ GA
Sbjct: 198 TDIREKWQNKVRYLLVDEYQDTNASQYLLVKYLIGTRNQFTVVGDDDQSIYAWRGARPEN 257
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+ D+ + K + L +NYRST I+ A+ LI +N + K + ++ HG ++ +
Sbjct: 258 LMLLKDDYPSLKVVMLEQNYRSTSRILRCANVLISNNPHAFE-KQLWSEMGHGDEVRVIR 316
Query: 585 CHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI 642
C NEDA+ + +I L ++ P Y AILYR K+ + + +IP+ +
Sbjct: 317 CRNEDAEAERVAVEILTLHLRTDRP-----YSDFAILYRGNYQAKLIELKLQHHQIPYRL 371
Query: 643 HGV-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
G +F+ ++ V+ ++A R + DD + RV + +E ++ + +T R
Sbjct: 372 SGGNSFFGRQEVKDLMAYFRLIVNPDDDNAFLRVIN---VPRREIGSTTLEKLGNYATER 428
Query: 702 KCSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
K S +A +I G + F +L + ++ + VR + S I ++ +M
Sbjct: 429 KISMYAATDEIGLGEHLDPRFT-DRLARFKRFM-------DRVREQCSGEDPIAALRSM- 479
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
++D D L ++ Y +++V F + +++D+ G
Sbjct: 480 ----------IMDIDYENWLRTNSSSEKAADYRMSNVW------FLVEALKNTLEKDEDG 523
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
+ + +A I + R+ + + D + V + T+H SKGLE+ VF+ E +P
Sbjct: 524 AMTIEEA-IGKLVLRDMLERQQEEEDGADGVQMMTLHASKGLEFPYVFIMGMEEEILPHR 582
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEIP 936
+ ++EEERRL YV +TRAR+ L + + + PSRFL E+P
Sbjct: 583 SSI------EADTIEEERRLAYVGITRARETLAFTFAAKRKQYGEIIDCAPSRFLDELP 635
>gi|422606533|ref|ZP_16678541.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. mori str.
301020]
gi|330890183|gb|EGH22844.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. mori str.
301020]
Length = 669
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 184/719 (25%), Positives = 323/719 (44%), Gaps = 111/719 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+AMTFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ + LT+STFH+ L + R +L F I+
Sbjct: 60 AAREMKERVGTLLRGGEGRGLTVSTFHNLGLNIIRKEHTRLGYKPGFSIFDETD------ 113
Query: 350 EAVRLLENEKILVVKRISTDML----TTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNK 405
VK + TD++ + D ++ + L + +
Sbjct: 114 -------------VKALMTDIMQKEYSGDDGVDEIKNMIGSWKNELILPADALE------ 154
Query: 406 FERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+ + P E + A + +Y L++ NA+D+ DLI VKL
Sbjct: 155 -----------NARNPKE------QTAAIVYTHYQRTLKAYNAVDFDDLILLPVKLFQEH 197
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISG 524
++ +++Q+ + ++VDE+QDT+A QY L+++L S ++ T+VGDDDQSI+++ GA
Sbjct: 198 ADILEKWQNKVRYLLVDEYQDTNASQYLLVKLLIGSRHQFTVVGDDDQSIYAWRGARPEN 257
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+ D+ + K + L +NYRST I+ A+ LI +N + K + ++ HG +I +
Sbjct: 258 LMLLKDDYPSLKVVMLEQNYRSTSRILRCANVLISNNPHAFE-KQLWSEMGHGDEIRVIR 316
Query: 585 CHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI 642
C NEDA+ + +I L ++ P Y AILYR K+ + + ++P+ +
Sbjct: 317 CRNEDAEAERVAMEILTLHLRTDRP-----YSDFAILYRGNYQAKLIELKLQHHQVPYRL 371
Query: 643 HGV-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
G +F+ ++ V+ ++A R + DD + RV + +E ++ + +T R
Sbjct: 372 SGGNSFFGRQEVKDLMAYFRLLVNPDDDNAFLRVIN---VPRREIGSTTLEKLGNYATER 428
Query: 702 KCSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV 760
K S +A +I G + + +L R + + V A
Sbjct: 429 KVSMYAATEEIGLGEHLDSRY-----------------TDRLQRFKRWMDGVRQQCAQND 471
Query: 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
P L + V+D D L +++ Y +++V F + +++D++G
Sbjct: 472 PIAAL--RSMVMDIDYENWLRQNSSSEKAADYRMSNVW------FLIEALKNTLEKDEEG 523
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
+ + +A I + R+ + + D V + T+H SKGLE+ VF+ E +P
Sbjct: 524 GMTIEEA-IGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPHR 582
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEIP 936
+ ++EEERRL YV +TRAR+ L + + + PSRFL E+P
Sbjct: 583 SSI------EADTIEEERRLAYVGITRARQTLAFTFAAKRKQYGEIIDCAPSRFLDELP 635
>gi|385786836|ref|YP_005817945.1| ATP-dependent DNA helicase Rep [Erwinia sp. Ejp617]
gi|310766108|gb|ADP11058.1| ATP-dependent DNA helicase Rep [Erwinia sp. Ejp617]
Length = 673
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 194/726 (26%), Positives = 347/726 (47%), Gaps = 102/726 (14%)
Query: 260 MSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAASEMRDRIGSIVGK 304
++ P L++AG GSGK G +I A+TFT A+ EM++R+ +G+
Sbjct: 14 VTGPCLVLAGAGSGKTRVITNKIAYLIRECGYQARHIAAVTFTNKASREMKERVAQTLGR 73
Query: 305 ATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV--RLLENEKILV 362
A+ L ISTFH+ L++ + L S F ++ Q + A+++ + + LEN+K L+
Sbjct: 74 KEARGLMISTFHTLGLEIIKREYAALGMKSNFSLFDD-QDQLALLKDLTEQWLENDKNLL 132
Query: 363 VKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDVAKASGKTPA 422
+ IST +S++K D MD +A+ +
Sbjct: 133 QQLIST--------------------------ISNWK--------NDLMDPPRAAAGALS 158
Query: 423 EFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVD 482
E D++ A Y+ L+SCN LD+ DLI L E + +Q + ++VD
Sbjct: 159 E----RDKLFAHCYALYDKHLKSCNVLDFDDLILLPTLLFQRNLEARERWQQRIRYLLVD 214
Query: 483 EFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLT 541
E+QDT+ QY L+++L + R T+VGDDDQSI+S+ GA ++DF + I+L
Sbjct: 215 EYQDTNTSQYELVKLLVGARARFTVVGDDDQSIYSWRGARPQNLVLLQEDFPALQVIKLE 274
Query: 542 RNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILE 601
+NYRS+ I++AA+ LI +N + K + ++ +G+++ + ++ED + +I +++
Sbjct: 275 QNYRSSERILKAANILIANNPHVFE-KRLFSELGYGAELKVVTANHEDHEAERVIGELIA 333
Query: 602 HASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRKKVVRAIIAML 660
H + Y AILYR +VF+ + +IP+ I G +F+ + ++ ++A L
Sbjct: 334 HHF---INKTQYKDYAILYRGNHQSRVFEKMLMQNRIPYRISGGTSFFSRPEIKDLLAYL 390
Query: 661 RTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDI-FGAKISG 719
R DD + R+ +E + + + + R S +A+ D+ G ++G
Sbjct: 391 RVLTNADDDSAFMRIVNT---PRREIGSATLQKLGEWAMQRNKSLFTASFDVGLGQTLTG 447
Query: 720 TFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKL 779
L ++ L+ I++L REP ++AV + + + +L E A ++
Sbjct: 448 ----RGLESLQRFTHWLQEIARLAEREP-VAAVRDLIRGVDYESWLFETSASPKAAEMRM 502
Query: 780 LNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEH 839
N + ++ Q++ T E ++D+ L + + R+
Sbjct: 503 KN----VNTLFQWM------------TEMLEGSDIDEPM-----TLTQVVTRFTLRDMME 541
Query: 840 FRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERR 899
R + + + V L T+H SKGLE+ VF+ E +P H+ +++E +VEEERR
Sbjct: 542 -RGESDEESDQVQLMTLHASKGLEFPYVFLVGMEEGLLP--HQ--SSLDE--NNVEEERR 594
Query: 900 LLYVAMTRARKKL-FILYVMMDANWQLL--QPSRFLKEIPHHLREVQAEQSVQDQHENIP 956
L YV +TRA+K+L F L +L+ +PSRFL E+P + ++E+ V E +
Sbjct: 595 LAYVGITRAQKELTFTLCRERRQYGELVRPEPSRFLLELPQDDLQWESERKVVSAEERMQ 654
Query: 957 EGTAQF 962
+G
Sbjct: 655 KGQGHL 660
>gi|417822327|ref|ZP_12468927.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HE48]
gi|340049570|gb|EGR10484.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HE48]
Length = 671
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 204/735 (27%), Positives = 357/735 (48%), Gaps = 99/735 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ +GK ++ L +STFH+ L + R + L + F ++
Sbjct: 62 EMKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R +L ++S++K D +
Sbjct: 110 ---DQDQLALLKELTEKQL--DGDKDLLR--------LLLSTISNWK--------NDMLT 148
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
+A E ++ A E Y ++S NALD+ DLI V LL + EV Q +
Sbjct: 149 PPQAKAIAKGE----QQQLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEEVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L+++L R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F + K I+L +NYRST I+ AA+ LI +N Q K + ++ + G K+ + +NED +
Sbjct: 265 FPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQ-KALFSELAEGEKLKVILANNEDHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +I+ H + Y AILYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AERVTAEIIAHKF---LNRTEYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ ++E ++ + + +R S +A+
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PKREIGPATLEKLGSYANMRGKSLFTASF 437
Query: 711 DI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQR 769
++ +SG L R+ L I+ R ++ AV V ++ + +L E
Sbjct: 438 ELGLEQHLSG----RGLDNLRRFTEWLVAIADNAERGNTVEAVRALVRDIRYEDWLYETS 493
Query: 770 AVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAF 828
A + + +V+D S + A EG N DQ +K LK
Sbjct: 494 ASP---------------KAAEMRMKNVSDLYS--WIVADLEGDNPDQQEK----TLKEV 532
Query: 829 IDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVN 888
+ ++ R+ R + +D+ ++V L T+H SKGLE+ V++ A E +P H+ +++
Sbjct: 533 VQRLTLRDMME-RGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILP--HQ--TSID 587
Query: 889 EKGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAE 945
E+ +VEEERRL+YV +TRA+++L F++ +L++P SRFL E+P E + +
Sbjct: 588 EE--NVEEERRLMYVGITRAQRELTFMVCKERRQFGELIKPTQSRFLDELPQEDIEWEVK 645
Query: 946 QSVQDQHENIPEGTA 960
+ Q E + +G A
Sbjct: 646 KKPVTQEERMAKGQA 660
>gi|421138389|ref|ZP_15598453.1| ATP-dependent DNA helicase Rep [Pseudomonas fluorescens BBc6R8]
gi|404510402|gb|EKA24308.1| ATP-dependent DNA helicase Rep [Pseudomonas fluorescens BBc6R8]
Length = 669
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 192/725 (26%), Positives = 319/725 (44%), Gaps = 123/725 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+AMTFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAHLIQSCGIRAQYIVAMTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ + LT+ TFH+ L + R +L F I+
Sbjct: 60 AAREMKERVGTLLKGGEGRGLTVCTFHNLGLNIIRKEHVRLGYKPGFSIFDETD------ 113
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
VK + TD++ Q D
Sbjct: 114 -------------VKALMTDIM------------------------------QKEYAGDD 130
Query: 410 GMDVAK---ASGKT----PAEF----RKIGDEIGAAILENYNGILRSCNALDYHDLISCS 458
G+D K S K PAE R ++ A + +Y L++ NA+D+ DLI
Sbjct: 131 GVDEIKNMIGSWKNDLILPAEALEAARNPKEQTAAIVYTHYQRTLKAFNAVDFDDLILLP 190
Query: 459 VKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSF 517
VKL ++ +++Q+ + ++VDE+QDT+A QY L+++L N+ T+VGDDDQSI+++
Sbjct: 191 VKLFQEHADILEKWQNKVRYLLVDEYQDTNASQYLLVKLLIGKRNQFTVVGDDDQSIYAW 250
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GA + D+ + K + L +NYRST I+ A+ LI +N + K + ++ HG
Sbjct: 251 RGARPENLMLLKDDYPSLKVVMLEQNYRSTSRILRCANVLISNNPHEFE-KQLWSEMGHG 309
Query: 578 SKIIIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
+I + C NEDA+ + ++ L ++ P Y AILYR K+ + +
Sbjct: 310 DEIRVIRCRNEDAEAERVAVELLTLHLRTDRP-----YSDFAILYRGNYQAKLIELKLQH 364
Query: 636 RKIPFNIHGV-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+IP+ + G +F+ ++ V+ ++A R + DD + RV + +E ++ +
Sbjct: 365 HQIPYRLSGGNSFFGRQEVKDLMAYFRLIVNPDDDNAFLRVIN---VPRREIGSTTLEKL 421
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
+T+RK S +A +I G L +L R + + V
Sbjct: 422 GNYATVRKISMYAATDEI----------------GLGEHLDTRFTDRLARFKRFMDKVRE 465
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
A P L + V+D D L ++ Y + +V F + +
Sbjct: 466 QCAGEDPISAL--RSMVMDIDYENWLRTNSSSDKAADYRMGNVW------FLIEALKNTL 517
Query: 815 DQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
++D++G + V A I + R+ + + D V + T+H SKGLE+ VF+ E
Sbjct: 518 EKDEEGEMTVEDA-IGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGMEE 576
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRF 931
+P + ++EEERRL YV +TRAR+ L + + + PSRF
Sbjct: 577 EILPHRSSI------EADTIEEERRLAYVGITRARQTLAFTFAAKRKQYGEIIDCAPSRF 630
Query: 932 LKEIP 936
L E+P
Sbjct: 631 LDELP 635
>gi|389856737|ref|YP_006358980.1| superfamily I DNA/RNA helicase [Streptococcus suis ST1]
gi|353740455|gb|AER21462.1| superfamily I DNA/RNA helicase [Streptococcus suis ST1]
Length = 759
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 205/728 (28%), Positives = 330/728 (45%), Gaps = 115/728 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L +ND+Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 5 LNGMNDRQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R ++ ++ I+TFHS +++ R A+ + F I G+QR +
Sbjct: 64 AAREMKERAYAL--NPATQDCLIATFHSMCVRMLRRDADHIGYNRNFTIVDPGEQRSLM- 120
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
R+L+N + K +L T S + L FE
Sbjct: 121 --KRILKNLNLDPKKWSERSILGT-------------------ISNAKNDLIDDKAFEAQ 159
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
D+ +I A Y LR A+D+ DLI +++L PEV
Sbjct: 160 AGDLYT--------------QIVAKCYTAYQKELRQSEAVDFDDLIMLTLRLFDQNPEVL 205
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
YQ ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F
Sbjct: 206 TYYQQKYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDF 265
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ K + L NYRST+ +++AA+ +I++N R + K + T N G I +E
Sbjct: 266 EKDYPESKVVLLEENYRSTKNVLQAANEVIENNRNR-RPKKLWTQNVQGDLITYYRARDE 324
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAF 647
+ + F+ +I + G A Y A+LYR + + A + IP+ + G F
Sbjct: 325 NDEAIFVAGQIDQLHREGKA----YKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKF 380
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV----IDHIDKISTIRKC 703
Y +K +R +I+ L D+ Y R+ E K+ V +D + +T
Sbjct: 381 YSRKEIRDVISYLNIIANPSDNISYERIV-------NEPKRGVGPGTVDKLRDFATSHSM 433
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
S + A+ DI + I G ++ + + L +++ V+ +V N
Sbjct: 434 SLLEASQDIMLSPIKGKAAQAVFDLANLLYNLRNQLDNL-----TVTQVVEAVLN----- 483
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
Q +D L N L + + + ++ +FLS T +E +V++++ G
Sbjct: 484 ----QTGYID-----ALAAQNTLEANAR--IENIQEFLSV--TKNFDEKDVEEEETGLDR 530
Query: 824 VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
+ + +D +T+ T+ + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 531 LTRFLLDLALIADTDDGDTESSE----VTLMTLHAAKGLEFPVVFLIGMEENVFPL---- 582
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEIP 936
E+ +EEERRL YV +TRA + L+ + +AN +LL QPSRF++EI
Sbjct: 583 -SRAAEEEDELEEERRLAYVGITRAEQTLY----LTNANSRLLFGRTNYNQPSRFIREIS 637
Query: 937 HHLREVQA 944
L + Q
Sbjct: 638 SDLLDYQG 645
>gi|212716069|ref|ZP_03324197.1| hypothetical protein BIFCAT_00982 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212661436|gb|EEB22011.1| hypothetical protein BIFCAT_00982 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 907
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 214/746 (28%), Positives = 335/746 (44%), Gaps = 129/746 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAA 290
++ LN QQ+EA LLI AG GSGK G S+ILA+TFT A
Sbjct: 32 IKDLNPQQMEA-VKYYGQALLIGAGAGSGKTRVLTRRIAWLLAHGFWASSILAITFTNKA 90
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIE 350
A+EMR+R+ ++VG A+ + ISTFHS +++ R +++ TS F IY R
Sbjct: 91 AAEMRERLAALVGP-EAEHMWISTFHSACVRILRRDGKEIGLTSGFSIYDTADCERL--- 146
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
V+L+ + + KR + ML G + SL L S C Y +R G
Sbjct: 147 -VKLISGDLNIDTKRYTPRMLL--GKISDCKNSLTSWQDQL----KSVN-CDYKPGQR-G 197
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
V+ +G DE+ A + Y L NA+D+ DLI +V+L P+V +
Sbjct: 198 YQVS--AGDV--------DELVAVVYAEYQHRLAMANAVDFDDLIMRTVELFQRCPQVSE 247
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILAS------------------HNRITIVGDDDQ 512
Y+ ++ + VDE+QDT+ QY L++ L+ + IT+VGD DQ
Sbjct: 248 YYRHKFRYVFVDEYQDTNHAQYVLVRELSGIDSGEQPDPQMRGAGRVGPSWITVVGDSDQ 307
Query: 513 SIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQT 572
SI++F GADI F +DF N K I L +NYRST+ I++AA+++I N R + K + T
Sbjct: 308 SIYAFRGADIRNIQDFEQDFPNAKTIMLEQNYRSTQTILDAANAVIARNENR-KPKKLWT 366
Query: 573 DNSHGSKIIIKECHNEDAQCAFIIDKILE-HASNGPASICSYGSIAILYRRQVSGKVFQT 631
G KI+ N + +I ++I H G +Y IAI+YR + +
Sbjct: 367 ALGEGDKIVGYAADNAQQEAGWIANEIARIHEEEG----IAYRDIAIMYRANAQSRSLEE 422
Query: 632 AFRERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV 690
A +P+ + G FY +K ++ +A L+ + D+ RR+ KR
Sbjct: 423 AMINANLPYQLVGGTKFYERKEIKDALAYLQAIVNPADNVNVRRILNV--------PKRG 474
Query: 691 IDHIDKISTIRKCSFISAACD-----IFGA-----KISGTFKRSQLTQG--RKVLLTLEM 738
+ +R I++ D FGA +I G R+ G R ++ L
Sbjct: 475 L-------GVRAEGLIASYADAHDTTFFGAIEHMEQIEGMSARTTKPLGVFRDMMHGLAD 527
Query: 739 ISKLVRREPSISAVITSVANMVPQKYLLE--QRAVVDFDGGKLLNEDNDLRSVLQYLLAD 796
+K +PS VA ++ + +LE QR+ D ++ D S LQ + A+
Sbjct: 528 FAKDHDTKPS-----EVVAEVLSKSGILEELQRSEDPQDASRV-----DNLSQLQSVAAE 577
Query: 797 VTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTI 856
E+ D G + D ++ + D+ VT+ T+
Sbjct: 578 F------------EQNTPDATLAGFLETTALVAD------SDQLPGENEDS-GKVTMMTL 618
Query: 857 HQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILY 916
H +KGLE+ VF+ + P H+ E + + EERRL YV +TRA+++L++
Sbjct: 619 HTAKGLEYPYVFLTGMEQGTFP--HQ---RAMEDTSELAEERRLAYVGITRAKRRLYVTR 673
Query: 917 VMMDANWQL---LQPSRFLKEIPHHL 939
+ A W + S+FL EIP L
Sbjct: 674 AAVRAQWGQANDMMHSQFLDEIPDEL 699
>gi|423092969|ref|ZP_17080765.1| ATP-dependent DNA helicase Rep [Pseudomonas fluorescens Q2-87]
gi|397882739|gb|EJK99226.1| ATP-dependent DNA helicase Rep [Pseudomonas fluorescens Q2-87]
Length = 669
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 194/724 (26%), Positives = 318/724 (43%), Gaps = 121/724 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+AMTFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+GS++ + LT+ TFH+ L + R +L F I+
Sbjct: 60 AAREMKERVGSLLRGGEGRGLTVCTFHNLGLNIIRKEHARLGYKPGFSIFDETD------ 113
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
VK + TD++ Q D
Sbjct: 114 -------------VKALMTDIM------------------------------QKEYSGDD 130
Query: 410 GMDVAK---ASGKT----PAEF----RKIGDEIGAAILENYNGILRSCNALDYHDLISCS 458
G+D K S K PAE R ++ A + +Y L++ NA+D+ DLI
Sbjct: 131 GVDEIKNMIGSWKNDLILPAEALENARNPKEQTAAIVYTHYQRTLKAFNAVDFDDLILLP 190
Query: 459 VKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSF 517
VKL ++ +++Q+ + ++VDE+QDT+A QY L+++L N+ T+VGDDDQSI+++
Sbjct: 191 VKLFQDHADILEKWQNKVRYLLVDEYQDTNASQYLLVKLLIGKRNQFTVVGDDDQSIYAW 250
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GA ++D+ + K + L +NYRST I+ A+ LI +N + K + ++ HG
Sbjct: 251 RGARPENLMLLKEDYPSLKVVMLEQNYRSTSRILRCANVLISNNPHEFE-KQLWSEMGHG 309
Query: 578 SKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERK 637
+I + C NEDA+ + +IL S + Y AILYR K+ + + +
Sbjct: 310 DEIRVIRCRNEDAEAERVAMEIL---SLHLRTDRPYSDFAILYRGNYQAKLIELKLQHHQ 366
Query: 638 IPFNIHGV-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDK 696
IP+ + G +F+ ++ V+ ++A R + DD + RV + +E ++ +
Sbjct: 367 IPYRLSGGNSFFGRQEVKDLMAYFRLIVNPDDDNAFLRVIN---VPRREIGSTTLEKLGN 423
Query: 697 ISTIRKCSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITS 755
+T RK S +A +I G + F +L R + + V
Sbjct: 424 YATERKISMYAATDEIGLGEHLDSRF-----------------TDRLARFKRFMDKVREQ 466
Query: 756 VANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVD 815
A P L + V+D D L ++ Y + +V F + ++
Sbjct: 467 CAGEDPISAL--RSMVMDIDYENWLRTNSSSDKAADYRMGNVW------FLIEALKNTLE 518
Query: 816 QDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANET 875
+D+ G + V A I + R+ + + D V + T+H SKGLE+ VF+ E
Sbjct: 519 KDEDGEMTVEDA-IGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGMEEE 577
Query: 876 EIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFL 932
+P + ++EEERRL YV +TRAR+ L + + + PSRFL
Sbjct: 578 ILPHRSSI------EADTIEEERRLAYVGITRARQTLAFTFAAKRKQYGEVIDCAPSRFL 631
Query: 933 KEIP 936
E+P
Sbjct: 632 DELP 635
>gi|3024353|sp|P56255.1|PCRA_GEOSE RecName: Full=ATP-dependent DNA helicase PcrA
gi|4930230|pdb|3PJR|A Chain A, Helicase Substrate Complex
gi|15988533|pdb|1QHG|A Chain A, Structure Of Dna Helicase Mutant With Adpnp
gi|157833507|pdb|1PJR|A Chain A, Structure Of Dna Helicase
Length = 724
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 215/730 (29%), Positives = 334/730 (45%), Gaps = 124/730 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L LN +Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 9 LAHLNKEQQEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNK 67
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+ S++G A A+++ ISTFHS +++ R +++ F I Q +
Sbjct: 68 AAREMRERVQSLLGGA-AEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQ----L 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++ + EK + K+ R L ++A
Sbjct: 123 SVMKTILKEKNIDPKKFEP------------RTILGTISA-------------------- 150
Query: 410 GMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
AK P +F K +++ + + + Y L ++LD+ DLI +++L
Sbjct: 151 ----AKNELLPPEQFAKRASTYYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRV 206
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
P+V YQ ++ I +DE+QDT+ QY+L++ LA I VGD DQSI+ + GADI
Sbjct: 207 PDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQNICAVGDADQSIYRWRGADIQN 266
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ N K I L +NYRST+ I++AA+ +I+HNV R + K + T+N G I+ E
Sbjct: 267 ILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNR-KPKRIWTENPEGKPILYYE 325
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-H 643
NE + F+ +I E G Y A+LYR +V + + IP+ I
Sbjct: 326 AMNEADEAQFVAGRIREAVERGER---RYRDFAVLYRTNAQSRVMEEMLLKANIPYQIVG 382
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
G+ FY +K ++ I+A LR DD R+ + ++ ID + + + +
Sbjct: 383 GLKFYDRKEIKDILAYLRVIANPDDDLSLLRIIN---VPKRGIGASTIDKLVRYAADHEL 439
Query: 704 SFISAACDI------FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVA 757
S A ++ A + RSQL Q T +
Sbjct: 440 SLFEALGELEMIGLGAKAAGALAAFRSQLEQW------------------------TQLQ 475
Query: 758 NMVPQKYLLEQRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQ 816
V L+E+ V+D G + +L + + + Q L ++ +FLS K NV
Sbjct: 476 EYVSVTELVEE--VLDKSGYREMLKAERTIEA--QSRLENLDEFLSV----TKHFENVSD 527
Query: 817 DKKGCINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
D K I L A I + E + T++ ++V L T+H +KGLE+ +VF+ E
Sbjct: 528 D-KSLIAFLTDLALISDLDELDG----TEQAAEGDAVMLMTLHAAKGLEFPVVFLIGMEE 582
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD---ANWQLLQPSRF 931
P N ++ + +EEERRL YV +TRA ++L + M N Q+ PSRF
Sbjct: 583 GIFP----HNRSLEDD-DEMEEERRLAYVGITRAEEELVLTSAQMRTLFGNIQMDPPSRF 637
Query: 932 LKEIPHHLRE 941
L EIP HL E
Sbjct: 638 LNEIPAHLLE 647
>gi|70733315|ref|YP_263089.1| ATP-dependent DNA helicase Rep [Pseudomonas protegens Pf-5]
gi|68347614|gb|AAY95220.1| ATP-dependent DNA helicase Rep [Pseudomonas protegens Pf-5]
Length = 669
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 192/724 (26%), Positives = 324/724 (44%), Gaps = 121/724 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+AMTFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ + LT+STFH+ L + R +L F I+
Sbjct: 60 AAREMKERVGTLLRSGEGRGLTVSTFHNLGLNIIRKEHVRLGYKPGFSIFDETD------ 113
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
VK + TD++ Q D
Sbjct: 114 -------------VKALMTDIM------------------------------QKEYSGDD 130
Query: 410 GMDVAK---ASGKT----PAEF----RKIGDEIGAAILENYNGILRSCNALDYHDLISCS 458
G+D K S K PAE R ++ A + +Y L++ NA+D+ DLI
Sbjct: 131 GVDEIKNMIGSWKNDLILPAEALENARNPKEQTAAIVYTHYQRTLKAFNAVDFDDLILLP 190
Query: 459 VKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSF 517
VKL ++ +++Q+ + ++VDE+QDT+A QY L+++L N+ T+VGDDDQSI+++
Sbjct: 191 VKLFEEHADILEKWQNKVRYLLVDEYQDTNASQYLLVKMLIGKRNQFTVVGDDDQSIYAW 250
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GA + D+ + K + L +NYRST I+ A+ LI +N + K + ++ HG
Sbjct: 251 RGARPENLMLLKDDYPSLKVVMLEQNYRSTSRILRCANVLISNNPHEFE-KQLWSEMGHG 309
Query: 578 SKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERK 637
+I + C NEDA+ + +IL S + Y AILYR K+ + + +
Sbjct: 310 DEIRVIRCRNEDAEAERVAMEIL---SLHLRTDRPYSDFAILYRGNYQAKLIELKLQHHQ 366
Query: 638 IPFNIHGV-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDK 696
+P+ + G +F+ ++ V+ ++A R + DD + RV + +E ++ +
Sbjct: 367 VPYRLSGGNSFFGRQEVKDLMAYFRLIVNPDDDNAFLRVIN---VPRREIGSTTLEKLGN 423
Query: 697 ISTIRKCSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITS 755
+T RK S +A +I G + F +L + ++ + VR + + I++
Sbjct: 424 YATERKISMYAATDEIGLGEHLDSRFT-DRLARFKRFM-------DRVREQCAGEDPISA 475
Query: 756 VANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVD 815
+ +M V+D D L ++ Y + +V F + ++
Sbjct: 476 LRSM-----------VMDIDYENWLRTNSSSDKAADYRMGNVW------FLIEALKNTLE 518
Query: 816 QDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANET 875
+D+ G + V A I + R+ + + D V + T+H SKGLE+ VF+ E
Sbjct: 519 KDEDGEMTVEDA-IGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGMEEE 577
Query: 876 EIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFL 932
+P + ++EEERRL YV +TRAR+ L + + + PSRFL
Sbjct: 578 ILPHRSSI------EADTIEEERRLAYVGITRARQTLAFTFAAKRKQYGEIIDCAPSRFL 631
Query: 933 KEIP 936
E+P
Sbjct: 632 DELP 635
>gi|421350015|ref|ZP_15800383.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HE-25]
gi|395955122|gb|EJH65725.1| ATP-dependent DNA helicase Rep [Vibrio cholerae HE-25]
Length = 671
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 203/737 (27%), Positives = 354/737 (48%), Gaps = 97/737 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ +GK ++ L +STFH+ L + R + L + F ++
Sbjct: 62 EMKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R +L ++S++K D +
Sbjct: 110 ---DQDQLALLKELTEKQL--DGDKDLLR--------LLLSTISNWK--------NDMLT 148
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
+A E ++ A E Y ++S NALD+ DLI V LL + EV Q +
Sbjct: 149 PPQAKAMAKGE----QQQLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSSEEVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT++ QY L+++L R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QNRIRYLLVDEYQDTNSSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F + K I+L +NYRST I+ AA+ LI +N Q K + ++ + G K+ + +NED +
Sbjct: 265 FPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQ-KALFSELAEGEKLKVILANNEDHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +I+ H + Y AILYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AERVTAEIIAHKF---LNRTEYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ ++E ++ + + +R S +A+
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PKREIGPATLEKLGSYANMRGKSLFAAS- 436
Query: 711 DIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRA 770
F + L R+ L I+ R ++ AV V ++ + +L E +
Sbjct: 437 --FELGLEQHLGGRGLDNLRRFTEWLVAIADNAERGNTVEAVRALVRDIRYEDWLYETSS 494
Query: 771 VVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAFI 829
+ + +V+D S + A EG N DQ +K LK +
Sbjct: 495 SP---------------KAAEMRMKNVSDLYS--WIVADLEGDNPDQQEK----TLKEVV 533
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
++ R+ R + +D+ ++V L T+H SKGLE+ V++ A E +P H+ +++E
Sbjct: 534 QRLTLRDMME-RGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILP--HQ--TSIDE 588
Query: 890 KGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAEQ 946
+ +VEEERRL+YV +TRA+++L FI+ +L++P SRFL E+P E + +
Sbjct: 589 E--NVEEERRLMYVGITRAQRELTFIVCKERRQFGELIKPSQSRFLDELPQDDIEWEVKN 646
Query: 947 SVQDQHENIPEGTAQFT 963
Q E + +G A
Sbjct: 647 KPVTQEERMAKGQAHIA 663
>gi|421163837|ref|ZP_15622515.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa ATCC 25324]
gi|404527291|gb|EKA37458.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa ATCC 25324]
Length = 669
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 193/721 (26%), Positives = 332/721 (46%), Gaps = 115/721 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+A+TFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAYLVQQCGIRAQYIVAVTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ K LT+STFH+ L + R E+L F I+ + +
Sbjct: 60 AAREMKERVGTLLRGGEGKGLTVSTFHNLGLNIIRKEHERLGYKPGFSIFDESDIKALLT 119
Query: 350 EAVRLLENEKILVVKRISTDMLTTDG------HFGYMRASLFMMNAMLFFSMSSFKLCQY 403
+ ++ K S D DG + G + L + L
Sbjct: 120 D----------IMQKEYSGD----DGVDEIKNYIGAWKNDLILPEEAL------------ 153
Query: 404 NKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
+ P E + A + +Y LR+ NA+D+ DLI VKL
Sbjct: 154 ------------EKARNPKE------QTAAIVYLHYQRTLRAYNAVDFDDLILQPVKLFQ 195
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-RITIVGDDDQSIFSFNGADI 522
P+V Q++Q+ + ++VDE+QDT+A QY L+++L + T+VGDDDQSI+++ GA
Sbjct: 196 EHPDVLQKWQNKVRYMLVDEYQDTNASQYLLVKLLVKDRAQFTVVGDDDQSIYAWRGARP 255
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
++DF + K + L +NYRST I++ A+ LI +N + K + ++ HG I +
Sbjct: 256 ENLMQLKEDFPSLKVVMLEQNYRSTSRILKCANVLIANNPHVFE-KQLWSEMGHGDPIRV 314
Query: 583 KECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
C NEDA+ I +I L + P Y ILYR K+ + + +IP+
Sbjct: 315 IRCRNEDAEAERIAMEILTLHLRTERP-----YSEFPILYRGNHQAKLMELKLQHHQIPY 369
Query: 641 NIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIST 699
+ G +F+ ++ V+ +++ R + DD + RV + +E ++ + +T
Sbjct: 370 RLSGGTSFFGRQEVKDLMSYFRLLVNPDDDNAFLRVIN---VPRREIGSATLEKLGNYAT 426
Query: 700 IRKCSFISAACDIFG-AKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
RK S + AACD G A+ + +L + ++ + +RR+ + + I + +
Sbjct: 427 QRKIS-MYAACDEMGLAEHLDSRFHERLQRFKRWM-------DDIRRQCAENEPIAVLRS 478
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
M V+D D L ++ V ++ +++V F + +++D+
Sbjct: 479 M-----------VMDIDYENWLRQNASSDKVAEFRMSNVW------FLIEALKNTLERDE 521
Query: 819 KGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
+G + + +A I + R+ + + + V + T+H SKGLE+ VF+ E +P
Sbjct: 522 EGDMTIEQA-IAKLVLRDMLERQQEEEEGAEGVQMMTLHASKGLEFPYVFIMGMEEEILP 580
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEI 935
+ +VEEERRL YV +TRAR+ L + + + + PSRFL E+
Sbjct: 581 HRSSI------EADTVEEERRLAYVGITRARQNLAMTFAAKRKQYGEIIDCSPSRFLDEL 634
Query: 936 P 936
P
Sbjct: 635 P 635
>gi|229512505|ref|ZP_04401977.1| ATP-dependent DNA helicase Rep [Vibrio cholerae TMA 21]
gi|229350504|gb|EEO15452.1| ATP-dependent DNA helicase Rep [Vibrio cholerae TMA 21]
Length = 671
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 203/737 (27%), Positives = 354/737 (48%), Gaps = 97/737 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ +GK ++ L +STFH+ L + R + L + F ++
Sbjct: 62 EMKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R +L ++S++K D +
Sbjct: 110 ---DQDQLALLKELTEKQL--DGDKDLLR--------LLLSTISNWK--------NDMLT 148
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
+A E ++ A E Y ++S NALD+ DLI V LL + EV Q +
Sbjct: 149 PPQAKAMAKGE----QQQLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEEVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L+++L R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F + K I+L +NYRST I+ AA+ LI +N Q K + ++ + G K+ + +NED +
Sbjct: 265 FPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQ-KALFSELAEGEKLKVILANNEDHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +I+ H + Y AILYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AERVTAEIIAHKF---LNRTEYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ ++E ++ + + +R S +A+
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PKREIGPATLEKLGSYANMRGKSLFAAS- 436
Query: 711 DIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRA 770
F + L R+ L I+ R ++ AV V ++ + +L E +
Sbjct: 437 --FELGLEQHLGGRGLDNLRRFTEWLVAIADNAERGNTVEAVRALVRDIRYEDWLYETSS 494
Query: 771 VVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAFI 829
+ + +V+D S + A EG N DQ +K LK +
Sbjct: 495 SP---------------KAAEMRMKNVSDLYS--WIVADLEGDNPDQQEK----TLKEVV 533
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
++ R+ R + +D+ ++V L T+H SKGLE+ V++ A E +P H+ +++E
Sbjct: 534 QRLTLRDMME-RGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILP--HQ--TSIDE 588
Query: 890 KGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAEQ 946
+ +VEEERRL+YV +TRA+++L FI+ +L++P SRFL E+P E + ++
Sbjct: 589 E--NVEEERRLMYVGITRAQRELTFIVCKERRQFGELIKPSQSRFLDELPQDDIEWEVKK 646
Query: 947 SVQDQHENIPEGTAQFT 963
Q E + +G A
Sbjct: 647 KPVTQEERMAKGQAHIA 663
>gi|397667572|ref|YP_006509109.1| DNA-dependent ATPase I and helicase II [Legionella pneumophila
subsp. pneumophila]
gi|395130983|emb|CCD09232.1| DNA-dependent ATPase I and helicase II [Legionella pneumophila
subsp. pneumophila]
Length = 721
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 202/735 (27%), Positives = 337/735 (45%), Gaps = 119/735 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ LN++Q +A + +L++AG GSGK +SP ILA+TFT
Sbjct: 7 LKGLNEKQRDAVTSPLGN-MLVLAGAGSGKTKVLVSRIAWLIEEQHLSPHAILAVTFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR R+ S++ +T L + TFH +L R H ++ +F I Q R
Sbjct: 66 AAGEMRSRLSSMLSTSTLG-LWVGTFHGLCHRLLRRHYKEANLPEQFHILDSEDQAR--- 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
V+KR+ + +N +++ Q F
Sbjct: 122 ------------VIKRV-----------------ILSLN----LDPEQWQVKQAQAF--- 145
Query: 410 GMDVAKASGKTPAEFRKIG---DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
++ K G P + + +I + Y + ++ +D+ +L+ + +LL
Sbjct: 146 -INSKKDEGLRPQHINALHYGPTKTLVSIYKAYEDVCQTSGVIDFAELLLRTHELLRDNE 204
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGF 525
E+ Y++ ++AI+VDEFQDT+ +QY+ +++LA H + VGDDDQSI+ + GA +
Sbjct: 205 EILAHYRERFQAILVDEFQDTNTIQYAWIRLLAGDHTAVLAVGDDDQSIYGWRGAKVENI 264
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
F DF + + IRL +NYRST I+ AA++LI +N R K + T S G KI++
Sbjct: 265 QQFVHDFKDTQIIRLEQNYRSTAMILNAANALIHNNSTRMG-KELWTAGSEGEKILVYSA 323
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-G 644
NE + F+ ++I + G S IA+LYR +V + A I + I+ G
Sbjct: 324 FNELDEARFVTERIGMELNQG----ASADEIAVLYRSNAQSRVLEEALLRVGIAYRIYGG 379
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCS 704
V F+ + ++ +A LR + DD + RV + ++ +D + + + +CS
Sbjct: 380 VRFFDRAEIKDTLAYLRLLVNPNDDTAFERVVN---FPTRGIGEKTLDEVRQYARAEQCS 436
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKY 764
A+ I + +G +R L + + ++I KL +V K
Sbjct: 437 LWDASKGILQS--TGLGQRGSLALAKFI----DLIEKL--------------QVVVANKE 476
Query: 765 LLEQRA-VVDFDG-----GKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
L EQ + V+ G K+ + ++ R D L AAK + + D+
Sbjct: 477 LDEQISDVIQHSGLYAHFSKIKGDKSESR----------VDNLQELINAAK-QFRYEYDE 525
Query: 819 KGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
+ + ++ +F+ + S E Q ++E SV L T+H +KGLE+ IVF+ E P
Sbjct: 526 EEELPLVNSFLAHAS---LESGELQAEEHERSVHLMTLHAAKGLEFPIVFLVGMEEGIFP 582
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSRFLKEI 935
++ E G +EEERRL YV MTRA +KL + Y + + + + SRFL+EI
Sbjct: 583 ----GRQSIEEPG-RLEEERRLCYVGMTRAMRKLVLSYAEVRRQYGREEYHRSSRFLREI 637
Query: 936 PHH-LREVQAEQSVQ 949
P L EV+ + Q
Sbjct: 638 PQQFLDEVRVKSRSQ 652
>gi|452975675|gb|EME75493.1| ATP-dependent DNA helicase PcrA [Bacillus sonorensis L12]
Length = 739
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 214/723 (29%), Positives = 331/723 (45%), Gaps = 113/723 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L LN+ Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 9 LNGLNNVQQEA-VKTTDGPLLIMAGAGSGKTRVLTHRIAYLMAEKRVAPWNILAITFTNK 67
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+DR+ SI+G A ++ ISTFHS +++ R +++ F I Q I
Sbjct: 68 AAREMKDRVESILGPG-ADDIWISTFHSMCVRILRRDIDRIGINRNFSILDTSDQLSVI- 125
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ IL + I G + S + +L ++E
Sbjct: 126 --------KGILKERNIDPKKFDPRSILGSI-------------SGAKNELIDPEEYE-- 162
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
KT F +++ + + ++Y LR +LD+ DLI +++L PEV
Sbjct: 163 ---------KTAGGFF---EQVVSDVYKDYQKKLRKNQSLDFDDLIMTTIRLFDRVPEVL 210
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSF 528
+ YQ ++ I VDE+QDT+ QY L++ +A I +VGD DQSI+ + GADI+ SF
Sbjct: 211 EYYQRKFQYIHVDEYQDTNRAQYLLVKKMAQRFQNICVVGDSDQSIYRWRGADIANILSF 270
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
KD+ N I L +NYRST+ I+ AA+ +I++N R + K + T+N G+KI NE
Sbjct: 271 EKDYPNASVILLEQNYRSTKRILNAANEVIKNNSNR-KPKKLWTENDEGAKISYFRGDNE 329
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVAF 647
+ F+ KI E +G SY IAILYR +V + + I +NI G F
Sbjct: 330 FGEGQFVAGKIRELVQSGKR---SYSDIAILYRTNAQSRVIEETLMKANISYNIVGGTKF 386
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID--HIDKISTIRKCSF 705
Y +K ++ I+A LR DD + R+ KR + +DKI+ +
Sbjct: 387 YDRKEIKDILAYLRLVANPDDDISFARIVNV--------PKRGVGATSVDKIAAYADMNG 438
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYL 765
+S +F A L Q + L+ + + L +I ++ NM Q+YL
Sbjct: 439 LS----LFEA----------LGQVDFIGLSAKAANAL----DDFRQMIENLTNM--QEYL 478
Query: 766 ----LEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
L + + + ++L + L + Q L ++ +FLS T E+ + D+
Sbjct: 479 SVTELTEEILEKTEYREMLKAEKSLEA--QSRLENIDEFLSV--TKNFEQQSEDKSLVAF 534
Query: 822 IN--VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
+ L A ID + ++E E N +V L T+H +KGLE+ +VF+ E P
Sbjct: 535 LTDLALIADIDQLDQQEEE------SGNNEAVILMTLHAAKGLEFPVVFLMGLEEGVFPH 588
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD---ANWQLLQPSRFLKEIP 936
+EEERRL YV +TRA ++L++ M + SRF+ EIP
Sbjct: 589 SRSLMEE-----AEMEEERRLAYVGITRAEEELYLTNARMRTLFGRTNMNPESRFIAEIP 643
Query: 937 HHL 939
L
Sbjct: 644 EEL 646
>gi|421156832|ref|ZP_15616270.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa ATCC 14886]
gi|404518603|gb|EKA29427.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa ATCC 14886]
Length = 669
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 192/721 (26%), Positives = 332/721 (46%), Gaps = 115/721 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+A+TFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAYLVQQCGIRAQYIVAVTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ K LT+STFH+ L + R E+L F I+ + +
Sbjct: 60 AAREMKERVGTLLRGGEGKGLTVSTFHNLGLNIIRKEHERLGYKPGFSIFDESDIKALLT 119
Query: 350 EAVRLLENEKILVVKRISTDMLTTDG------HFGYMRASLFMMNAMLFFSMSSFKLCQY 403
+ ++ K S D DG + G + L + L
Sbjct: 120 D----------IMQKEYSGD----DGVDEIKNYIGAWKNDLILPEEAL------------ 153
Query: 404 NKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
+ P E + A + +Y LR+ NA+D+ DLI VKL
Sbjct: 154 ------------EKARNPKE------QTAAIVYLHYQRTLRAYNAVDFDDLILQPVKLFQ 195
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-RITIVGDDDQSIFSFNGADI 522
P+V Q++Q+ + ++VDE+QDT+A QY L+++L + T+VGDDDQSI+++ GA
Sbjct: 196 EHPDVLQKWQNKVRYMLVDEYQDTNASQYLLVKLLVKDRAQFTVVGDDDQSIYAWRGARP 255
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
++DF + K + L +NYRST I++ A+ LI +N + K + ++ HG I +
Sbjct: 256 ENLMQLKEDFPSLKVVMLEQNYRSTSRILKCANVLIANNPHVFE-KQLWSEMGHGDPIRV 314
Query: 583 KECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
C NEDA+ I +I L + P Y AILYR K+ + + +IP+
Sbjct: 315 IRCRNEDAEAERIAMEILTLHLRTERP-----YSEFAILYRGNHQAKLMELKLQHHQIPY 369
Query: 641 NIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIST 699
+ G +F+ ++ V+ +++ R + DD + RV + +E ++ + +T
Sbjct: 370 RLSGGTSFFGRQEVKDLMSYFRLLVNPDDDNAFLRVIN---VPRREIGSATLEKLGNYAT 426
Query: 700 IRKCSFISAACDIFG-AKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
RK S + AAC+ G A+ + +L + ++ + +RR+ + + I + +
Sbjct: 427 QRKIS-MYAACEEMGLAEHLDSRFHERLQRFKRWM-------DGIRRQCAENEPIAVLRS 478
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
M V+D D L ++ V ++ +++V F + +++D+
Sbjct: 479 M-----------VMDIDYENWLRQNASSDKVAEFRMSNVW------FLIEALKNTLERDE 521
Query: 819 KGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
+G + + +A + R+ + + + V + T+H SKGLE+ VF+ E +P
Sbjct: 522 EGDMTIEQAIAKLVL-RDMLERQQEEEEGAEGVQMMTLHASKGLEFPYVFIMGMEEEILP 580
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEI 935
+ +VEEERRL YV +TRAR+ L + + + + PSRFL E+
Sbjct: 581 HRSSI------EADTVEEERRLAYVGITRARQNLAMTFAAKRKQYGEIIDCSPSRFLDEL 634
Query: 936 P 936
P
Sbjct: 635 P 635
>gi|326390898|ref|ZP_08212449.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter ethanolicus JW
200]
gi|325993046|gb|EGD51487.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter ethanolicus JW
200]
Length = 711
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 218/725 (30%), Positives = 343/725 (47%), Gaps = 126/725 (17%)
Query: 245 LQSLNDQQLEAACGDMST--PLLIVAGPGSGKG---------------ISPSNILAMTFT 287
L +LND+Q EA M+T PLLI+AG GSGK +SPSNILA+TFT
Sbjct: 5 LGNLNDKQREAV---MTTEGPLLILAGAGSGKTRVLTHRIAYLIKEKKVSPSNILAITFT 61
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM+ R+ ++G +L +STFHS +++ R +K+ F+I+ Q+
Sbjct: 62 NKAAEEMKTRVEDLLG--YIGDLWVSTFHSACVRILRRDIDKIGYDRNFVIFDTTDQKAL 119
Query: 348 IIEAVRLLE-NEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
I E ++ L +EK VK + +NA+ SS
Sbjct: 120 IQECLKELNLSEKQYPVKTV--------------------LNAI-----SS--------- 145
Query: 407 ERDGMDVAKASGKTPAEFRKI-GDEIGAA----ILENYNGILRSCNALDYHDLISCSVKL 461
AK TP E+ + G+E + I + Y L+ NALD+ D+I +++L
Sbjct: 146 -------AKDKMVTPEEYIYVFGNEYRSKKISEIYKLYQKKLKKNNALDFDDIIIKTIEL 198
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGA 520
PEV YQ +K I+VDE+QDT+ QY + +LA R + +VGDDDQSI+ + GA
Sbjct: 199 FKESPEVLDFYQRKFKYIMVDEYQDTNMPQYHFVNMLAQKYRNLCVVGDDDQSIYGWRGA 258
Query: 521 DISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKI 580
D+ +F KD+ K I+L +NYRST+ I+EAA+ +I +N++R + K + T+N G +I
Sbjct: 259 DVKNILNFEKDYPEAKVIKLEQNYRSTKTILEAANYVIDNNIRRKK-KTLWTNNEEGERI 317
Query: 581 IIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKI 638
I+ E NE + F+I +I L+ N S+ AILYR + F+ A +I
Sbjct: 318 ILCELENEREEAEFVIQEIINLKERENR-----SFRDFAILYRTNAQSRAFEEALMRVRI 372
Query: 639 PFNIHG-VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKI 697
P+ + G + FY +K ++ IIA LR + DD ++R+ + ++ I+ ++
Sbjct: 373 PYKVVGALRFYDRKEIKDIIAYLRILVNPYDDISFKRIIN---VPKRGIGAATIEALEAT 429
Query: 698 STIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVA 757
+ + S A D AK+S K S L LE+I K + ++S VI
Sbjct: 430 ALEKDTSLFFAIDD---AKVSQRAKNSLLEFKE---FILELIDK--KDTMTVSEVIN--- 478
Query: 758 NMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQD 817
Y+LE+ G + + + + + ++ +FL+ AA E +D
Sbjct: 479 ------YILEE-------TGYIEELEKEESEQAEGRIENLNEFLN----AAYEFEESSED 521
Query: 818 KKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
K L+AF+ I+ + + SV L T+H +KGLE+ IVF+ E
Sbjct: 522 KS-----LEAFLSGITLVSDIDLAGEIGE---SVVLMTLHSAKGLEFPIVFMVGMEEGIF 573
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM---MDANWQLLQPSRFLKE 934
P F + YV +TR+++KL++ Y + Q SRF+ E
Sbjct: 574 PSFKSFTDEYELEEERRL-----CYVGITRSKEKLYLTYARRRNLYGKSQYSSYSRFISE 628
Query: 935 IPHHL 939
IP
Sbjct: 629 IPERF 633
>gi|389680653|ref|ZP_10172003.1| ATP-dependent DNA helicase Rep [Pseudomonas chlororaphis O6]
gi|425902311|ref|ZP_18878902.1| ATP-dependent DNA helicase Rep [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|388555758|gb|EIM19001.1| ATP-dependent DNA helicase Rep [Pseudomonas chlororaphis O6]
gi|397881957|gb|EJK98445.1| ATP-dependent DNA helicase Rep [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
Length = 669
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 187/717 (26%), Positives = 318/717 (44%), Gaps = 107/717 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+AMTFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ + LT+STFH+ L + R +L F I+
Sbjct: 60 AAREMKERVGTLLRSGEGRGLTVSTFHNLGLNIIRKEHVRLGYKPGFSIFDETD------ 113
Query: 350 EAVRLLENEKILVVKRISTDML----TTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNK 405
VK + TD++ + D ++ + L + +
Sbjct: 114 -------------VKALMTDIMQKEYSGDDGVDEIKNMIGAWKNDLILPAQALE------ 154
Query: 406 FERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+ + P E + A + +Y L++ NA+D+ DLI VKL
Sbjct: 155 -----------NARNPKE------QTAAIVYTHYQRTLKAFNAVDFDDLILLPVKLFEEH 197
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISG 524
++ +++Q+ + ++VDE+QDT+A QY L+++L N+ T+VGDDDQSI+++ GA
Sbjct: 198 ADILEKWQNKVRYLLVDEYQDTNASQYLLVKMLIGKRNQFTVVGDDDQSIYAWRGARPEN 257
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
++D+ + K + L +NYRST I+ A+ LI +N + K + ++ HG +I +
Sbjct: 258 LMLLKEDYPSLKVVMLEQNYRSTSRILRCANVLISNNPHEFE-KQLWSEMGHGDEIRVIR 316
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG 644
C NEDA+ + +IL S + Y AILYR K+ + + +IP+ + G
Sbjct: 317 CRNEDAEAERVAMEIL---SLHLRTDRPYSDFAILYRGNYQAKLIELKLQHHQIPYRLSG 373
Query: 645 V-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
+F+ ++ V+ ++A R + DD + RV + +E ++ + +T RK
Sbjct: 374 GNSFFGRQEVKDLMAYFRLIVNPDDDNAFLRVIN---VPRREIGSTTLEKLGNYATERKI 430
Query: 704 SFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S +A +I G + F +L R + + V A P
Sbjct: 431 SMYAATDEIGLGEHLDSRF-----------------TDRLARFKRFMDKVREQCAGEDPI 473
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
L + V+D D L ++ Y + +V F + +++D+ G +
Sbjct: 474 SAL--RSMVMDIDYENWLRTNSSSDKAADYRMGNVW------FLIEALKNTLEKDEDGEM 525
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
V A I + R+ + + D V + T+H SKGLE+ VF+ E +P
Sbjct: 526 TVEDA-IGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPHRSS 584
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEIP 936
+ ++EEERRL YV +TRAR+ L + + + PSRFL E+P
Sbjct: 585 I------EADTIEEERRLAYVGITRARQTLAFTFAAKRKQYGEIIDCAPSRFLDELP 635
>gi|399010650|ref|ZP_10713015.1| ATP-dependent DNA helicase Rep [Pseudomonas sp. GM17]
gi|398106338|gb|EJL96377.1| ATP-dependent DNA helicase Rep [Pseudomonas sp. GM17]
Length = 669
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 187/717 (26%), Positives = 318/717 (44%), Gaps = 107/717 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+AMTFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ + LT+STFH+ L + R +L F I+
Sbjct: 60 AAREMKERVGTLLRSGEGRGLTVSTFHNLGLNIIRKEHVRLGYKPGFSIFDETD------ 113
Query: 350 EAVRLLENEKILVVKRISTDML----TTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNK 405
VK + TD++ + D ++ + L + +
Sbjct: 114 -------------VKALMTDIMQKEYSGDDGVDEIKNMIGAWKNDLILPAQALE------ 154
Query: 406 FERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+ + P E + A + +Y L++ NA+D+ DLI VKL
Sbjct: 155 -----------NARNPKE------QTAAIVYTHYQRTLKAFNAVDFDDLILLPVKLFEEH 197
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISG 524
++ +++Q+ + ++VDE+QDT+A QY L+++L N+ T+VGDDDQSI+++ GA
Sbjct: 198 ADILEKWQNKVRYLLVDEYQDTNASQYLLVKMLIGKRNQFTVVGDDDQSIYAWRGARPEN 257
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
++D+ + K + L +NYRST I+ A+ LI +N + K + ++ HG +I +
Sbjct: 258 LMLLKEDYPSLKVVMLEQNYRSTSRILRCANVLISNNPHEFE-KQLWSEMGHGDEIRVIR 316
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG 644
C NEDA+ + +IL S + Y AILYR K+ + + +IP+ + G
Sbjct: 317 CRNEDAEAERVAMEIL---SLHLRTDRPYSDFAILYRGNYQAKLIELKLQHHQIPYRLSG 373
Query: 645 V-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
+F+ ++ V+ ++A R + DD + RV + +E ++ + +T RK
Sbjct: 374 GNSFFGRQEVKDLMAYFRLIVNPDDDNAFLRVIN---VPRREIGSTTLEKLGNYATERKI 430
Query: 704 SFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S +A +I G + F +L R + + V A P
Sbjct: 431 SMYAATDEIGLGEHLDSRF-----------------TDRLARFKRFMDKVREQCAGEDPI 473
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
L + V+D D L ++ Y + +V F + +++D+ G +
Sbjct: 474 SAL--RSMVMDIDYENWLRTNSSSDKAADYRMGNVW------FLIEALKNTLEKDEDGEM 525
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
V A I + R+ + + D V + T+H SKGLE+ VF+ E +P
Sbjct: 526 TVEDA-IGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPHRSS 584
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEIP 936
+ ++EEERRL YV +TRAR+ L + + + PSRFL E+P
Sbjct: 585 I------EADTIEEERRLAYVGITRARQTLAFTFAAKRKQYGEVIDCAPSRFLDELP 635
>gi|146305294|ref|YP_001185759.1| ATP-dependent DNA helicase Rep [Pseudomonas mendocina ymp]
gi|145573495|gb|ABP83027.1| ATP-dependent DNA helicase Rep [Pseudomonas mendocina ymp]
Length = 669
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 187/718 (26%), Positives = 333/718 (46%), Gaps = 109/718 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI +I+AMTFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAHLVQNCGIQARHIVAMTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ + A+ LT+STFH+ + + R +L F I+ G
Sbjct: 60 AAREMKERVGTLLRGSEARGLTVSTFHNLGMNIIRKEYARLGYKPGFSIFDDGD------ 113
Query: 350 EAVRLLENEKILVVKRISTDMLTTD--GHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
+K + TD++ + G G + + ++
Sbjct: 114 -------------IKALLTDIMQKEYAGDDGADEVKNLI-----------------DSWK 143
Query: 408 RDGM--DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
D + D A A + P E + A + +Y L++ NA+D++DLI VKL
Sbjct: 144 NDLILPDEALAKARGPKE------QTAAIVYLHYQRTLKAYNAVDFNDLILLPVKLFQEH 197
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISG 524
P++ +++Q+ + ++VDE+QDT+A QY L+++L N+ T+VGDDDQSI+++ GA
Sbjct: 198 PDILEKWQNRIRYLLVDEYQDTNASQYLLVKMLVGMRNQFTVVGDDDQSIYAWRGARPEN 257
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
++D+ + K + L +NYRST I++ A+ LI +N + K + ++ HG +I +
Sbjct: 258 LMLLKEDYPSLKVVMLEQNYRSTSRILKCANILIANNPHVFE-KQLWSEMGHGDEIRVIR 316
Query: 585 CHNEDAQCAFIIDKIL-EHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH 643
NE+A+C + +IL EH + Y AILYR K+ + + +IP+ +
Sbjct: 317 TRNEEAECERVALEILTEHLR----TQRPYSDFAILYRGNYQAKLMELKLQHHQIPYRLS 372
Query: 644 -GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRK 702
G +F+ ++ V+ +++ R + DD + RV + +E ++ + ++ RK
Sbjct: 373 GGTSFFARQEVKDLMSYFRLLVNPDDDNAFLRVIN---VPRREIGSTTLEKLGNYASERK 429
Query: 703 CSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
S +AA +I G + F L VR+E + + I ++ +M
Sbjct: 430 ISMYAAAGEIGLGEHLDARFTER--------LQRFTRWMDRVRQECAQNDPIAAIRSM-- 479
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
V+D D L ++ V + +V F + +++D+ G
Sbjct: 480 ---------VMDIDYENWLRQNASSDKVADARMGNVW------FLVDALKNTLERDEDGD 524
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
+ + A I + R+ + + + V + T+H SKGLE+ V++ E +P
Sbjct: 525 MTIEDA-IGKLVLRDMLERQQEEEEGAEGVQMMTMHASKGLEFPSVYIIGFEEEILPHRS 583
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEIP 936
+ ++EEERRL YV +TRA++ L + + + + PSRFL E+P
Sbjct: 584 SI------EADTIEEERRLAYVGITRAKRNLTLTFAAKRKQYGEVIDCSPSRFLDELP 635
>gi|71735974|ref|YP_272392.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257482511|ref|ZP_05636552.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|416013379|ref|ZP_11561539.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. glycinea
str. B076]
gi|416022690|ref|ZP_11567783.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. glycinea
str. race 4]
gi|422406437|ref|ZP_16483466.1| ATP-dependent DNA helicase Rep, partial [Pseudomonas syringae pv.
glycinea str. race 4]
gi|422595363|ref|ZP_16669651.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. lachrymans
str. M301315]
gi|422683507|ref|ZP_16741767.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|71556527|gb|AAZ35738.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320326736|gb|EFW82781.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. glycinea
str. B076]
gi|320331290|gb|EFW87233.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330881655|gb|EGH15804.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330985668|gb|EGH83771.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. lachrymans
str. M301315]
gi|331012841|gb|EGH92897.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
Length = 669
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 190/726 (26%), Positives = 324/726 (44%), Gaps = 125/726 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+AMTFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ + LT+STFH+ L + R +L F I+
Sbjct: 60 AAREMKERVGTLLRGGEGRGLTVSTFHNLGLNIIRKEHTRLGYKPGFSIFDETD------ 113
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
VK + TD++ Q D
Sbjct: 114 -------------VKALMTDIM------------------------------QKEYSGDD 130
Query: 410 GMDVAK---ASGKT----PAEF----RKIGDEIGAAILENYNGILRSCNALDYHDLISCS 458
G+D K S K PA+ R ++ A + +Y L++ NA+D+ DLI
Sbjct: 131 GVDEIKNMIGSWKNDLILPADALENARNPKEQTAAIVYTHYQRTLKAYNAVDFDDLILLP 190
Query: 459 VKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSF 517
VKL ++ +++Q+ + ++VDE+QDT+A QY L+++L S ++ T+VGDDDQSI+++
Sbjct: 191 VKLFQEHADILEKWQNKVRYLLVDEYQDTNASQYLLVKLLIGSRHQFTVVGDDDQSIYAW 250
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GA + D+ + K + L +NYRST I+ A+ LI +N + K + ++ HG
Sbjct: 251 RGARPENLMLLKDDYPSLKVVMLEQNYRSTSRILRCANVLISNNPHAFE-KQLWSEMGHG 309
Query: 578 SKIIIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
+I + C NEDA+ + +I L ++ P Y AILYR K+ + +
Sbjct: 310 DEIRVIRCRNEDAEAERVAMEILTLHLRTDRP-----YSDFAILYRGNYQAKLIELKLQH 364
Query: 636 RKIPFNIHGV-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
++P+ + G +F+ ++ V+ ++A R + DD + RV + +E ++ +
Sbjct: 365 HQVPYRLSGGNSFFGRQEVKDLMAYFRLLVNPDDDNAFLRVIN---VPRREIGSTTLEKL 421
Query: 695 DKISTIRKCSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI 753
+T RK S +A +I G + + +L R + + V
Sbjct: 422 GNYATERKVSMYAATEEIGLGEHLDSRY-----------------TDRLQRFKRWMDGVR 464
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
A P L + V+D D L +++ Y +++V F +
Sbjct: 465 QQCAQNDPIAAL--RSMVMDIDYENWLRQNSSSEKAADYRMSNVW------FLIEALKNT 516
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+++D++G + + +A I + R+ + + D V + T+H SKGLE+ VF+
Sbjct: 517 LEKDEEGGMTIEEA-IGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGME 575
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSR 930
E +P + ++EEERRL YV +TRAR+ L + + + PSR
Sbjct: 576 EEILPHRSSI------EADTIEEERRLAYVGITRARQTLAFTFAAKRKQYGEIIDCAPSR 629
Query: 931 FLKEIP 936
FL E+P
Sbjct: 630 FLDELP 635
>gi|444378981|ref|ZP_21178167.1| ATP-dependent DNA helicase Rep [Enterovibrio sp. AK16]
gi|443676930|gb|ELT83625.1| ATP-dependent DNA helicase Rep [Enterovibrio sp. AK16]
Length = 672
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 194/726 (26%), Positives = 342/726 (47%), Gaps = 96/726 (13%)
Query: 256 ACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAASEMRDRIGS 300
A +S P L++AG GSGK G +I A+TFT AA EM++R+G
Sbjct: 10 AVHHVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARHIAAVTFTNKAAREMKERVGQ 69
Query: 301 IVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVRLLENEKI 360
+ + A+ L +STFH+ L + R + L + F ++ + +++
Sbjct: 70 TLNRQEARGLMVSTFHTLGLNIIRREYKSLGLKAGFSLFD---------------DQDQM 114
Query: 361 LVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDVAKASGKT 420
++K ++ D L D ++N +L ++S++K D + +A
Sbjct: 115 ALLKELTEDELDGDKD---------LLNQLLH-TISNWK--------NDMLTPQQAESAA 156
Query: 421 PAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAII 480
E D++ A Y +++ NALD+ DLI V LL T EV + +Q + ++
Sbjct: 157 MGE----RDQLFAHCYAMYQKQMKAYNALDFDDLILMPVILLKTNQEVRERWQSKIRYLL 212
Query: 481 VDEFQDTSAMQYSLLQILASHN-RITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIR 539
VDE+QDT+ QY L+++L R T+VGDDDQSI+S+ GA +DF + K I+
Sbjct: 213 VDEYQDTNTSQYQLVKLLVGERARFTVVGDDDQSIYSWRGAQPKNLLMLNQDFPSLKVIK 272
Query: 540 LTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKI 599
L +NYRST I+ AA+ LI +N + K + + G + + + +NE+ + ++ +I
Sbjct: 273 LEQNYRSTSRILRAANILIANNPHVFE-KTLFSALPDGEMLKVLKANNEEHEAERVVGEI 331
Query: 600 LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRKKVVRAIIA 658
+ H + Y AILYR ++F+ A + +IP+ I G +F+ + ++ I+A
Sbjct: 332 IAHKF---MNRTDYKDYAILYRGNHQSRLFEKALMQNRIPYKISGGTSFFARAEIKDIMA 388
Query: 659 MLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKIS 718
LR DD + R+ +E ++ + + +R S SA+ F +
Sbjct: 389 YLRLLTNQDDDNAFLRIVNT---PRREIGPVTLEKLGTYANMRGKSLFSAS---FELGLQ 442
Query: 719 GTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGK 778
L ++ + +S R ++ AV + V + + +L E A
Sbjct: 443 EHLNGRGLESLQRFTRWIVELSDQFERGDAVDAVRSLVRDSHYEDWLYETSASP------ 496
Query: 779 LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAFIDYISERET 837
+ + +V+D S + A EG N D + + L+ + ++ R+
Sbjct: 497 ---------KAAEMRMKNVSDLYS--WIVADLEGDNYDNE----VKTLREVVQRLTLRDM 541
Query: 838 EHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEE 897
R + D+ + V L T+H SKGLE+ V++ E +P H+ +++E +VEEE
Sbjct: 542 ME-RGEDDDDADQVQLMTLHASKGLEFPYVYLVGMEEGFLP--HQ--SSIDED--NVEEE 594
Query: 898 RRLLYVAMTRARKKL-FILYVMMDANWQLLQ--PSRFLKEIPHHLREVQAEQSVQDQHEN 954
RRL YV +TRA++++ F L +L++ PSRFL+E+P+ E + ++ Q Q E
Sbjct: 595 RRLAYVGITRAQREMTFTLCKERRQYGELIKPLPSRFLEELPYDDVEWEEKKKPQTQEER 654
Query: 955 IPEGTA 960
+ +G A
Sbjct: 655 MAKGQA 660
>gi|420142447|ref|ZP_14650046.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa CIG1]
gi|403244826|gb|EJY58683.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa CIG1]
Length = 669
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 193/721 (26%), Positives = 332/721 (46%), Gaps = 115/721 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+A+TFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAYLVQQCGIRAQYIVAVTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ K LT+STFH+ L + R E+L F I+ + +
Sbjct: 60 AAREMKERVGTLLRGGEGKGLTVSTFHNLGLNIIRKEHERLGYKPGFSIFDESDIKALLT 119
Query: 350 EAVRLLENEKILVVKRISTDMLTTDG------HFGYMRASLFMMNAMLFFSMSSFKLCQY 403
+ ++ K S D DG + G + L + L
Sbjct: 120 D----------IMQKEYSGD----DGVDEIKNYIGAWKNDLILPEEAL------------ 153
Query: 404 NKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
+ P E + A + +Y LR+ NA+D+ DLI VKL
Sbjct: 154 ------------EKARNPKE------QTAAIVYLHYQRTLRAYNAVDFDDLILQPVKLFQ 195
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-RITIVGDDDQSIFSFNGADI 522
P+V Q++Q+ + ++VDE+QDT+A QY L+++L + T+VGDDDQSI+++ GA
Sbjct: 196 EHPDVLQKWQNKVRYMLVDEYQDTNASQYLLVKLLVKDRAQFTVVGDDDQSIYAWRGARP 255
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
++DF + K + L +NYRS I++ A+ LI +N + K + ++ HG I +
Sbjct: 256 ENLMQLKEDFPSLKVVMLEQNYRSPSRILKCANVLIANNPHVFE-KQLWSEMGHGDPIRV 314
Query: 583 KECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
C NEDA+ I +I L + P Y AILYR K+ + + +IP+
Sbjct: 315 IRCRNEDAEAERIAMEILTLHLRTERP-----YSEFAILYRGNHQAKLMELKLQHHQIPY 369
Query: 641 NIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIST 699
+ G +F+ ++ V+ +++ R + DD + RV + +E ++ + +T
Sbjct: 370 RLSGGTSFFGRQEVKDLMSYFRLLVNPDDDNAFLRVIN---VPRREIGSATLEKLGNYAT 426
Query: 700 IRKCSFISAACDIFG-AKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
RK S + AACD G A+ + +L + ++ + +RR+ + + I + +
Sbjct: 427 QRKIS-MYAACDEMGLAEHLDSRFHERLQRFKRWMDD-------IRRQCAENEPIAVLRS 478
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
M V+D D L ++ V ++ +++V F + +++D+
Sbjct: 479 M-----------VMDIDYENWLRQNASSDKVAEFRMSNVW------FLIEALKNTLERDE 521
Query: 819 KGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
+G + + +A I + R+ + + + V + T+H SKGLE+ VF+ E +P
Sbjct: 522 EGDMTIEQA-IAKLVLRDMLERQQEEEEGAEGVQMMTLHASKGLEFPYVFIMGMEEEILP 580
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEI 935
+ +VEEERRL YV +TRAR+ L + + + + PSRFL E+
Sbjct: 581 HRSSI------EADTVEEERRLAYVGITRARQNLAMTFAAKRKQYGEIIDCSPSRFLDEL 634
Query: 936 P 936
P
Sbjct: 635 P 635
>gi|149910342|ref|ZP_01898985.1| putative ATP-dependent DNA helicase Rep [Moritella sp. PE36]
gi|149806590|gb|EDM66558.1| putative ATP-dependent DNA helicase Rep [Moritella sp. PE36]
Length = 671
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 194/710 (27%), Positives = 325/710 (45%), Gaps = 95/710 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKYISGPCLVLAGAGSGKTRVITTKIAHLVQNCSYKACNIAALTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++RI +GK AK L +STFH+ L + R + L F ++
Sbjct: 62 EMKERIAKTLGKKEAKGLMVSTFHTLGLNIIRKEYKTLGIKQAFTLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ D L D + L ++S++K N+
Sbjct: 110 ---DQDQLALLKELTQDTLEEDKE----------LIDQLRSAISNWK----NELVLPPQA 152
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
+A+A + P D++ A ++Y +++ NALD+ DLI LL EV + +
Sbjct: 153 IARA--QMPQ------DKLFAQCYDDYLRHMKAYNALDFDDLIMMPTLLLRLNEEVRERW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQILASHN-RITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L++++ + + T+VGDDDQSI+S+ GA +KD
Sbjct: 205 QNKIRYLLVDEYQDTNTSQYELVKLIVGQSAKFTVVGDDDQSIYSWRGARPENLTLLQKD 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F K ++L +NYRST+ I++AA+ LI +N K + ++ +G I + NE+ +
Sbjct: 265 FPGLKVVKLEQNYRSTQRILKAANILIDNNPHEFN-KRLFSELGYGEPIKVFTTKNEEHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
++ ++L H + Y AILYR ++F+ A +IP+ I G +F+ +
Sbjct: 324 AEKVVSELLAHKF---MARSDYKDYAILYRGNHQSRLFEKALMTNRIPYKISGGTSFFSR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ ++A LR + DD + RV + +E ++ + + +R S +A+
Sbjct: 381 AEIKDMMAYLRLLVNPDDDNAFLRVVN---VPRREIGPTTLEKLGNYANMRNISLFAAS- 436
Query: 711 DIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRA 770
F + T L R L ++ +R SI AV V ++ + +L E
Sbjct: 437 --FEMGLEQTLTGRGLLAVRGFTRWLVELADQEQRSDSIDAVRDMVRDIHYEDWLYETST 494
Query: 771 VVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFID 830
++ N R V + L D D EE + Q +
Sbjct: 495 SAKAAEMRMKNVSELYRWVTEMLKGDDLD----------EEMTLAQ-----------VVT 533
Query: 831 YISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEK 890
++ R+ R + D+ + V L T H SKGLE+ VF+ E +P + N
Sbjct: 534 RLTLRDMLE-RNEEEDDSDQVQLMTYHASKGLEYPYVFMVGMEEGILPHQSSIDDDPN-- 590
Query: 891 GTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEIPH 937
VEEERRL YV +TRA+K LF++ + + +PSRFL E+P
Sbjct: 591 ---VEEERRLAYVGITRAQKVLFMMLCKERRQFGEVVKPEPSRFLLELPQ 637
>gi|23428614|gb|AAM12391.1| helicase II [Zymomonas mobilis subsp. mobilis str. CP4 = NRRL
B-14023]
Length = 777
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 212/736 (28%), Positives = 326/736 (44%), Gaps = 131/736 (17%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGKGIS---------------PSNILAMTFTT 288
YL LN +Q E LL++AG G+GK + PS ILA+TFT
Sbjct: 18 YLARLNPEQKEV-VRTTEGALLVLAGAGTGKTAALTARLAYLVETLKAWPSQILAVTFTN 76
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAI 348
AA EM+ R+G ++G + TFHS + ++ R HAE + S+F+I Q R +
Sbjct: 77 KAAREMQMRVGYLLGSFAENMPWLGTFHSIAAKMLRRHAELVGLKSDFIILDTDDQIRLL 136
Query: 349 --------IEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKL 400
I+ + + ++ R LT D G SL M+ + F
Sbjct: 137 KQLIQGQGIDEKQWPAKQLAGIIDRWKNRGLTPDKIAGKEEDSLLMVKVLRF-------- 188
Query: 401 CQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVK 460
+ Y L S NA D+ DL+ +
Sbjct: 189 -----------------------------------ILAYQKRLLSLNACDFGDLLLHMLV 213
Query: 461 LLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNG 519
+L+ EV Y D ++ I+VDE+QDT+ QY L++LA NR I VGDDDQSI+S+ G
Sbjct: 214 ILTQHREVLDSYHDRFRYIMVDEYQDTNQAQYLWLRLLAQKNRNICCVGDDDQSIYSWRG 273
Query: 520 ADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSK 579
A+++ F +DF K IRL NYRST I+ AAS LI HN R K + T+ G K
Sbjct: 274 AEVANILRFEEDFPGAKIIRLEHNYRSTPQILGAASGLITHNNARLG-KTLWTERDQGEK 332
Query: 580 I-IIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKI 638
+ II + + D +N P + +AIL R Q + F+ F + +
Sbjct: 333 VKIIGVWDGAEEARQLVADVQNLRRANIPLN-----KMAILIRAQFQSREFEDIFIAKNL 387
Query: 639 PFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKI 697
P+ I G FY + +R +A LR DD + R+ + ++ K+ ++ + I
Sbjct: 388 PYRIIGGFRFYERAEIRDALAYLRVIAQPTDDLAFERIVN---VPKRGIGKKAMEKLIFI 444
Query: 698 STIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTL-EMISKLVRREPSISAVITSV 756
S R + +A D + S+ T G K+ +L ++++ S+S V S
Sbjct: 445 SKTRYSKYQAAFLDRIPLAEAAEKLVSEKTLGSKITQSLGQLMNDFSEWRKSLSVV--SH 502
Query: 757 ANMVPQKYLLEQRAVVDFDGGK-LLNEDNDLRSV--LQYLLADVTDFLSTKFTAAKEEGN 813
A++ R ++D G K +L ND++S L+ L T+ A EE
Sbjct: 503 ADVT--------RKMLDESGYKVMLRAVNDVQSAGRLENL---------TELARAMEE-- 543
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDN---ENSVTLTTIHQSKGLEWDIVFVA 870
+ L +F++++S H+N ++ +TL T+H +KGLE+D VF+
Sbjct: 544 --------YDDLGSFLEHVS-------LVMDHENDPIDDKITLMTMHAAKGLEFDHVFLP 588
Query: 871 KANETEIPLVHEFN-GAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM---MDANWQLL 926
E P + G +N S+EEERRL YV +TRA+K I + + W
Sbjct: 589 GWEEGVFPSQRSLDEGGLN----SLEEERRLAYVGITRAKKCCTIFHAANRRVYGQWIAS 644
Query: 927 QPSRFLKEIP-HHLRE 941
PSRF+ E+P H+ E
Sbjct: 645 TPSRFISELPDDHIEE 660
>gi|331000444|ref|ZP_08324119.1| putative DNA helicase II [Parasutterella excrementihominis YIT
11859]
gi|329571776|gb|EGG53456.1| putative DNA helicase II [Parasutterella excrementihominis YIT
11859]
Length = 781
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 202/721 (28%), Positives = 330/721 (45%), Gaps = 115/721 (15%)
Query: 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAA 290
+SLN QQ +A + + L I+AG GSGK PS ILA+TFT A
Sbjct: 6 ESLNKQQAQAVTAEPKSAL-ILAGAGSGKTRVLTSRIAYLLQQNMAHPSEILAVTFTNKA 64
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIE 350
A EM R+ +++ + + + TFH +L R H ++ S F I
Sbjct: 65 AKEMLARLQNMI-PINPRAMWVGTFHGLCNRLLRLHHQEAGLPSTFAI------------ 111
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
L ++++ V+KR+ M+A+ FK + F
Sbjct: 112 ---LDMSDQLGVIKRV-------------MKAN--------GIDTEEFKPREVQNFINRC 147
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
+ K + + ++F K D+ I Y +L+ A D+ +L+ + +LLS +
Sbjct: 148 KEEGKRASEVYSKFSK--DKAYIQIYAMYEAVLQREGACDFAELLLRAYELLSRNEMIRH 205
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILAS------HNRITIVGDDDQSIFSFNGADISG 524
YQ+ ++ I+VDEFQDT+ +QY L++LA N + VGDDDQSI++F GA++
Sbjct: 206 HYQERFRFILVDEFQDTNVLQYEWLKLLAGLGEKNPPNAVFAVGDDDQSIYAFRGANVGN 265
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF ++F + IRL +NYRS I++AA++LI +N +R KN+ TD G KI
Sbjct: 266 MMSFVQEFRIGEPIRLEQNYRSQGNILDAANALISNNSERMG-KNLWTDAGKGEKIRANR 324
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH- 643
N+ + F+ I E+ G S IAILYR ++F+T R IPF ++
Sbjct: 325 SDNDFDEARFVCSTIQEYIDKG----VSPEDIAILYRSNAQSRLFETELTRRGIPFMVYG 380
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
G+ F+ + ++ +A +R DD + RV + + + I+++ +T
Sbjct: 381 GLRFFDRAEIKNAMAYMRLAENPSDDSAFLRVVN---VPARGIGAKSIENLVDFATTNGI 437
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
S + I GA + + ++ TL ++ + E + A + + +K
Sbjct: 438 SLFESMQYIRGAAANKFAAFKE------IIDTL----RVAKDEMPLPAFV----DFTVEK 483
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG-CI 822
L +D +G + + +L S Q + KEE ++ G +
Sbjct: 484 SGLRNMYELDPNGSERIENLQELTSAAQGFI--------------KEEAIDTENSDGTAV 529
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
L A ++S E Q +++V L T+H SKGLE+DIVF+ E P
Sbjct: 530 ENLSALAGFVSHASLEAGENQAQVGQDAVQLMTVHASKGLEFDIVFITGLEEDMFP---H 586
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ-------PSRFLKEI 935
F ++K +++EERRL+YVA+TRARK+L++ A ++LQ PS FL EI
Sbjct: 587 FRSKNDKK--ALQEERRLMYVAITRARKELYLTL----AEERMLQGRSFSSYPSSFLTEI 640
Query: 936 P 936
P
Sbjct: 641 P 641
>gi|156972811|ref|YP_001443718.1| ATP-dependent DNA helicase [Vibrio harveyi ATCC BAA-1116]
gi|156524405|gb|ABU69491.1| hypothetical protein VIBHAR_00483 [Vibrio harveyi ATCC BAA-1116]
Length = 671
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 198/737 (26%), Positives = 348/737 (47%), Gaps = 97/737 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G +GKA +K L +STFH+ L + + + L + F ++
Sbjct: 62 EMKERVGQTLGKAESKGLMVSTFHTLGLNIIKREYKHLGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R L +S++K D +
Sbjct: 110 ---DQDQLALLKELTEKQL--DGDKDLLR--------QLLSCISNWK--------NDMLT 148
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
+A E ++ A E Y +++ NALD+ DLIS V+LL EV Q +
Sbjct: 149 PEQAKVLAQGE----QQQLFAFCFEMYQKQMKAYNALDFDDLISLPVQLLRNNEEVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQ-ILASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY L++ I+ R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 QNRIRYLLVDEYQDTNTSQYDLVKLIVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
+ N + I+L +NYRST I+ AA+ LI +N + K++ ++ G K+ + NE+ +
Sbjct: 265 YPNLRLIKLEQNYRSTSRILRAANILIANNPHVYE-KSLFSEIPDGEKLKVLLAKNEEHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +++ H + Y AILYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AERVTGELIAHKF---LNRTEYKDYAILYRGNHQSRLIEKSLMQNRVPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ +E ++ + + +R S +
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PRREIGPVTLEKLGSYANMRGKSLFEVS- 436
Query: 711 DIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRA 770
F + L R+ L I+ R ++ AV + V ++ + +L E A
Sbjct: 437 --FEMGLEQHLTGRGLENLRRFTKWLVAIADQAERGDTVEAVRSLVRDIHYEDWLYETSA 494
Query: 771 VVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAFI 829
+ + +V+D S + A EG N DQ +K LK +
Sbjct: 495 SP---------------KAAEMRMKNVSDLYS--WIVADLEGDNYDQAEK----TLKEVV 533
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
++ R+ R + ++ ++V L T+H SKGLE+ V++ + E +P H+ +++E
Sbjct: 534 QRLTLRDMME-RGEEDEDSDAVQLMTLHASKGLEFPFVYLIGSEEGILP--HQ--TSIDE 588
Query: 890 KGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAEQ 946
+VEEERRL+YV +TRA+++L F + +L++P SRFL E+P E +A +
Sbjct: 589 --DNVEEERRLMYVGITRAQRELTFTMCKERRQFGELIKPTQSRFLDELPFDDVEWEANK 646
Query: 947 SVQDQHENIPEGTAQFT 963
E + +G A
Sbjct: 647 KPVSAEERMAKGQAHIA 663
>gi|398876599|ref|ZP_10631753.1| ATP-dependent DNA helicase Rep [Pseudomonas sp. GM67]
gi|398884772|ref|ZP_10639698.1| ATP-dependent DNA helicase Rep [Pseudomonas sp. GM60]
gi|398193494|gb|EJM80594.1| ATP-dependent DNA helicase Rep [Pseudomonas sp. GM60]
gi|398204092|gb|EJM90901.1| ATP-dependent DNA helicase Rep [Pseudomonas sp. GM67]
Length = 669
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 191/726 (26%), Positives = 327/726 (45%), Gaps = 125/726 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+AMTFT
Sbjct: 1 MSRLNPRQQEAVSY-VGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ + LT+ TFH+ L + R +L F I+
Sbjct: 60 AAREMKERVGTLLKGGEGRGLTVCTFHNLGLNIIRKEHVRLGYKPGFSIFDETD------ 113
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
VK + TD++ Q D
Sbjct: 114 -------------VKALMTDIM------------------------------QKEYAGDD 130
Query: 410 GMDVAK---ASGKT----PAEF----RKIGDEIGAAILENYNGILRSCNALDYHDLISCS 458
G+D K S K PAE R ++ A + +Y L++ NA+D+ DLI
Sbjct: 131 GVDEIKNMIGSWKNDLILPAEALENSRNPKEQTAAIVYTHYQRTLKAFNAVDFDDLILLP 190
Query: 459 VKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSF 517
VKL ++ +++Q+ + ++VDE+QDT+A QY L+++L + N+ T+VGDDDQSI+++
Sbjct: 191 VKLFQEHADILEKWQNKVRYLLVDEYQDTNASQYLLVKLLIGTRNQFTVVGDDDQSIYAW 250
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GA + D+ + K + L +NYRST I+ A+ LI +N + K + ++ HG
Sbjct: 251 RGARPENLMLLKDDYPSLKVVMLEQNYRSTSRILRCANVLISNNPHEFE-KQLWSEMGHG 309
Query: 578 SKIIIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
+I + C NEDA+ + ++ L ++ P Y AILYR K+ + +
Sbjct: 310 DEIRVIRCRNEDAEAERVAVELLTLHLRTDRP-----YSDFAILYRGNYQAKLIELKLQH 364
Query: 636 RKIPFNIHGV-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+IP+ + G +F+ ++ V+ ++A R + DD + RV + +E ++ +
Sbjct: 365 HQIPYRLSGGNSFFGRQEVKDLMAYFRLIVNPDDDNAFLRVIN---VPRREIGSTTLEKL 421
Query: 695 DKISTIRKCSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI 753
+T RK S +A +I G + F +L++ ++ + VR + + I
Sbjct: 422 GNYATERKISMYAATDEIGLGEHLDARFT-DRLSRFKRFM-------DKVREQCAGEDPI 473
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
+++ +M V+D D L ++ Y + +V F +
Sbjct: 474 SALRSM-----------VMDIDYENWLRTNSSSDKAADYRMGNVW------FLIEALKNT 516
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+++D++G + V A I + R+ + + D V + T+H SKGLE+ VF+
Sbjct: 517 LEKDEEGEMTVEDA-IGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGME 575
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSR 930
E +P + ++EEERRL YV +TRAR+ L + + + PSR
Sbjct: 576 EEILPHRSSI------EADTIEEERRLAYVGITRARQTLAFTFAAKRKQYGEIIDCAPSR 629
Query: 931 FLKEIP 936
FL E+P
Sbjct: 630 FLDELP 635
>gi|397664310|ref|YP_006505848.1| DNA-dependent ATPase I and helicase II [Legionella pneumophila
subsp. pneumophila]
gi|395127721|emb|CCD05920.1| DNA-dependent ATPase I and helicase II [Legionella pneumophila
subsp. pneumophila]
Length = 721
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 202/735 (27%), Positives = 336/735 (45%), Gaps = 119/735 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ LN++Q +A + +L++AG GSGK +SP ILA+TFT
Sbjct: 7 LKGLNEKQRDAVTSPLGN-MLVLAGAGSGKTKVLVSRIAWLIEEQHLSPHAILAVTFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR R+ S++ T L + TFH +L R H ++ +F I Q R
Sbjct: 66 AAGEMRSRLSSMLSTPTLG-LWVGTFHGLCHRLLRRHYKEANLPEQFHILDSEDQAR--- 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
V+KR+ + +N +++ Q F
Sbjct: 122 ------------VIKRV-----------------ILSLN----LDPEQWQVKQAQAF--- 145
Query: 410 GMDVAKASGKTPAEFRKIG---DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
++ K G P + + +I + Y + ++ +D+ +L+ + +LL
Sbjct: 146 -INSKKDEGLRPQHINALHYGPTKTLVSIYKAYEDVCQTSGVIDFAELLLRTHELLRDNE 204
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGF 525
E+ Y++ ++AI+VDEFQDT+ +QY+ +++LA H + VGDDDQSI+ + GA +
Sbjct: 205 EILAHYRERFQAILVDEFQDTNTIQYAWIRLLAGDHTAVLAVGDDDQSIYGWRGAKVENI 264
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
F DF + + IRL +NYRST I+ AA++LI +N R K + T S G KI++
Sbjct: 265 QQFVHDFKDTQIIRLEQNYRSTAMILNAANALIHNNSTRMG-KELWTAGSEGEKILVYSA 323
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-G 644
NE + F+ ++I + G S IA+LYR +V + A I + I+ G
Sbjct: 324 FNELDEARFVTERIGMELNQG----ASADEIAVLYRSNAQSRVLEEALLRAGIAYRIYGG 379
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCS 704
V F+ + ++ +A LR + DD + RV + ++ +D + + + +CS
Sbjct: 380 VRFFDRAEIKDTLAYLRLLVNPNDDTAFERVVN---FPTRGIGEKTLDEVRQYARAEQCS 436
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKY 764
A+ I + +G +R L + + ++I KL +V K
Sbjct: 437 LWDASKGILQS--TGLGQRGSLALAKFI----DLIEKL--------------QVVVANKE 476
Query: 765 LLEQRA-VVDFDG-----GKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
L EQ + V+ G K+ + ++ R D L AAK + + D+
Sbjct: 477 LDEQISDVIQHSGLYAHFSKIKGDKSESR----------VDNLQELINAAK-QFRYEYDE 525
Query: 819 KGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
+ + ++ +F+ + S E Q ++E SV L T+H +KGLE+ IVF+ E P
Sbjct: 526 EEELPLVNSFLAHAS---LESGELQADEHERSVHLMTLHAAKGLEFPIVFLVGMEEGIFP 582
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSRFLKEI 935
++ E G +EEERRL YV MTRA +KL + Y + + + + SRFL+EI
Sbjct: 583 ----GRQSIEEPG-RLEEERRLCYVGMTRAMRKLVLSYAEVRRQYGREEYHRSSRFLREI 637
Query: 936 PHH-LREVQAEQSVQ 949
P L EV+ + Q
Sbjct: 638 PQQFLDEVRVKSRSQ 652
>gi|392987019|ref|YP_006485606.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa DK2]
gi|419754000|ref|ZP_14280394.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa PADK2_CF510]
gi|384399491|gb|EIE45860.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa PADK2_CF510]
gi|392322524|gb|AFM67904.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa DK2]
Length = 669
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 191/721 (26%), Positives = 330/721 (45%), Gaps = 115/721 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+A+TFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAYLVQQCGIRAQYIVAVTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ K LT+STFH+ L + R E+L F I+
Sbjct: 60 AAREMKERVGTLLRGGEGKGLTVSTFHNLGLNIIRKEHERLGYKPGFSIFDES------- 112
Query: 350 EAVRLLENEKILVVKRISTDMLTTDG------HFGYMRASLFMMNAMLFFSMSSFKLCQY 403
+ K L+ + + DG + G + L + L
Sbjct: 113 -------DIKALLSDIMQKEYSGNDGVDEIKNYIGAWKNDLILPEEAL------------ 153
Query: 404 NKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
+ P E + A + +Y LR+ NA+D+ DLI VKL
Sbjct: 154 ------------EKARNPKE------QTAAIVYLHYQRTLRAYNAVDFDDLILQPVKLFQ 195
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-RITIVGDDDQSIFSFNGADI 522
P+V Q++Q+ + ++VDE+QDT+A QY L+++L + T+VGDDDQSI+++ GA
Sbjct: 196 EHPDVLQKWQNKVRYMLVDEYQDTNASQYLLVKLLVKDRAQFTVVGDDDQSIYAWRGARP 255
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
++DF + K + L +NYRST I++ A+ LI +N + K + ++ HG I +
Sbjct: 256 ENLMQLKEDFPSLKVVMLEQNYRSTSRILKCANVLIANNPHVFE-KQLWSEMGHGDPIRV 314
Query: 583 KECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
C NEDA+ I +I L + P Y AILYR K+ + + +IP+
Sbjct: 315 IRCRNEDAEAERIAMEILTLHLRTERP-----YSEFAILYRGNHQAKLMELKLQHHQIPY 369
Query: 641 NIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIST 699
+ G +F+ ++ V+ +++ R + DD + RV + +E ++ + +T
Sbjct: 370 RLSGGTSFFGRQEVKDLMSYFRLLVNPDDDNAFLRVIN---VPRREIGSATLEKLGNYAT 426
Query: 700 IRKCSFISAACDIFG-AKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
RK S + AAC+ G A+ + +L + ++ + +RR+ + + I + +
Sbjct: 427 QRKIS-MYAACEEMGLAEHLDSRFHERLQRFKRWM-------DGIRRQCAENEPIAVLRS 478
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
M V+D D L ++ V ++ +++V F + +++D+
Sbjct: 479 M-----------VMDIDYENWLRQNASSDKVAEFRMSNVW------FLIEALKNTLERDE 521
Query: 819 KGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
+G + + +A + R+ + + + V + T+H SKGLE+ VF+ E +P
Sbjct: 522 EGDMTIEQAIAKLVL-RDMLERQQEEEEGAEGVQMMTLHASKGLEFPYVFIMGMEEEILP 580
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEI 935
+ +VEEERRL YV +TRAR+ L + + + + PSRFL E+
Sbjct: 581 HRSSI------EADTVEEERRLAYVGITRARQNLAMTFAAKRKQYGEIIDCSPSRFLDEL 634
Query: 936 P 936
P
Sbjct: 635 P 635
>gi|303257893|ref|ZP_07343902.1| DNA helicase II [Burkholderiales bacterium 1_1_47]
gi|302859236|gb|EFL82318.1| DNA helicase II [Burkholderiales bacterium 1_1_47]
Length = 787
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 202/721 (28%), Positives = 330/721 (45%), Gaps = 115/721 (15%)
Query: 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAA 290
+SLN QQ +A + + L I+AG GSGK PS ILA+TFT A
Sbjct: 12 ESLNKQQAQAVTAEPKSAL-ILAGAGSGKTRVLTSRIAYLLQQNMAHPSEILAVTFTNKA 70
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIE 350
A EM R+ +++ + + + TFH +L R H ++ S F I
Sbjct: 71 AKEMLARLQNMI-PINPRAMWVGTFHGLCNRLLRLHHQEAGLPSTFAI------------ 117
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
L ++++ V+KR+ M+A+ FK + F
Sbjct: 118 ---LDMSDQLGVIKRV-------------MKAN--------GIDTEEFKPREVQNFINRC 153
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
+ K + + ++F K D+ I Y +L+ A D+ +L+ + +LLS +
Sbjct: 154 KEEGKRASEVYSKFSK--DKAYIQIYAMYEAVLQREGACDFAELLLRAYELLSRNEMIRH 211
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILAS------HNRITIVGDDDQSIFSFNGADISG 524
YQ+ ++ I+VDEFQDT+ +QY L++LA N + VGDDDQSI++F GA++
Sbjct: 212 HYQERFRFILVDEFQDTNVLQYEWLKLLAGLGEKNPPNAVFAVGDDDQSIYAFRGANVGN 271
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF ++F + IRL +NYRS I++AA++LI +N +R KN+ TD G KI
Sbjct: 272 MMSFVQEFRIGEPIRLEQNYRSQGNILDAANALISNNSERMG-KNLWTDAGKGEKIRANR 330
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH- 643
N+ + F+ I E+ G S IAILYR ++F+T R IPF ++
Sbjct: 331 SDNDFDEARFVCSTIQEYIDKG----VSPEDIAILYRSNAQSRLFETELTRRGIPFMVYG 386
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
G+ F+ + ++ +A +R DD + RV + + + I+++ +T
Sbjct: 387 GLRFFDRAEIKNAMAYMRLAENPSDDSAFLRVVN---VPARGIGAKSIENLVDFATTNGI 443
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
S + I GA + + ++ TL ++ + E + A + + +K
Sbjct: 444 SLFESMQYIRGAAANKFAAFKE------IIDTL----RVAKDEMPLPAFV----DFTVEK 489
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG-CI 822
L +D +G + + +L S Q + KEE ++ G +
Sbjct: 490 SGLRNMYELDPNGSERIENLQELTSAAQGFI--------------KEEAIDTENSDGTAV 535
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
L A ++S E Q +++V L T+H SKGLE+DIVF+ E P
Sbjct: 536 ENLSALAGFVSHASLEAGENQAQVGQDAVQLMTVHASKGLEFDIVFITGLEEDMFP---H 592
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQ-------PSRFLKEI 935
F ++K +++EERRL+YVA+TRARK+L++ A ++LQ PS FL EI
Sbjct: 593 FRSKNDKK--ALQEERRLMYVAITRARKELYLTL----AEERMLQGRSFSSYPSSFLTEI 646
Query: 936 P 936
P
Sbjct: 647 P 647
>gi|90581490|ref|ZP_01237284.1| putative ATP-dependent DNA helicase Rep [Photobacterium angustum
S14]
gi|90437351|gb|EAS62548.1| putative ATP-dependent DNA helicase Rep [Photobacterium angustum
S14]
Length = 671
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 198/735 (26%), Positives = 347/735 (47%), Gaps = 97/735 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK NI A+TFT AA
Sbjct: 3 LNPRQTEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCDYKARNIAALTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G +G+ +K L +STFH+ L + R + L + F ++
Sbjct: 62 EMKERVGQTLGRQESKGLMVSTFHTLGLNIIRREYKHLGLKASFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ D L D + L S+S++K D +
Sbjct: 110 ---DQDQMALLKELTEDELEGDKD----------LLKQLMSSISNWK--------NDMLS 148
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
A A+ +E D++ A E Y +++ NALD+ DLI V LL EV + +
Sbjct: 149 PADATAHARSE----RDQLFAHCYEMYQRQMKAYNALDFDDLILMPVLLLRDNAEVRKHW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQILASHN-RITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY +++L R T+VGDDDQSI+S+ GA KD
Sbjct: 205 QNRIRYLLVDEYQDTNTSQYLFVKLLVGERARFTVVGDDDQSIYSWRGAQPENLGLLNKD 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F + K I+L +NYRST I+ A+ LI +N + K + ++ G+ + + NE+ +
Sbjct: 265 FPSLKVIKLEQNYRSTSRILRTANILIANNPHLFE-KALFSEIPDGAMLKVITAKNEEHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+I +++ H + +Y AILYR ++F+ + + +IP+ I G +F+ +
Sbjct: 324 AEKVIGELIAHRF---MNNTAYKDYAILYRGNHQSRLFEKSLMQNRIPYKISGGTSFFSR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR DD + R+ +E ++ + + +R S +A+
Sbjct: 381 SEIKDIMAYLRLLTNLDDDNAFLRIVNT---PRREIGPVTLEKLGTYANMRGKSLFAASF 437
Query: 711 DI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQR 769
++ +SG L ++ + ++ R +++AV V ++ + +L E
Sbjct: 438 EMGLEQHLSG----RGLESLQRFTHWVNQLADNAERGDTVAAVRQLVRDIHYEDWLYETS 493
Query: 770 AVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFI 829
+ + +V+D S TA E N D ++K LK +
Sbjct: 494 PSP---------------KAAEMRMKNVSDLYSW-ITADLEGDNYDNEEK----TLKEVV 533
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
++ R+ R + D+ + V L T+H SKGLE+ VF+ E +P H+ +++E
Sbjct: 534 QRLTLRDMME-RGEDDDDADQVQLMTLHASKGLEFPYVFLVGTEEGILP--HQ--TSIDE 588
Query: 890 KGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLL--QPSRFLKEIPHHLREVQAEQ 946
+ +V+EERRL YV +TRA+++L F L +L+ +PSRFL E+P E ++E+
Sbjct: 589 E--NVDEERRLAYVGITRAQRELTFTLCKERRQYGELIKPEPSRFLYELPQDDLEWESER 646
Query: 947 SVQDQHENIPEGTAQ 961
E + +G A
Sbjct: 647 KPVSAEERMNKGQAH 661
>gi|225075883|ref|ZP_03719082.1| hypothetical protein NEIFLAOT_00906 [Neisseria flavescens
NRL30031/H210]
gi|224952829|gb|EEG34038.1| hypothetical protein NEIFLAOT_00906 [Neisseria flavescens
NRL30031/H210]
Length = 666
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 188/721 (26%), Positives = 326/721 (45%), Gaps = 125/721 (17%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN QQ +AA + PLL++AG GSGK G P + A+TFT AA+
Sbjct: 3 LNPQQ-QAAVKYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAT 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ ++ K+ + LTI TFHS +++ R A ++ F I
Sbjct: 62 EMQERVSKMLPKSQTRGLTICTFHSLGMKILREEANQIGYKKNFSILD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHF--GYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
STD G G + ++F + + K +
Sbjct: 110 --------------STDSAKIIGELLGGTGKEAIFKAQHQISLWKNDLKTPE-------- 147
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
DV + + + ++ A + +Y L+S A+D+ DLI LL EV
Sbjct: 148 -DVVQTASN-------VWEQQTARVYASYQETLQSYQAVDFDDLIRLPAVLLQQNSEVRN 199
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFR 529
++Q + ++VDE QDT+ Q++L+++L + T VGDDDQSI+++ GA++ +
Sbjct: 200 KWQRRLRYLLVDECQDTNTCQFTLMKLLTGAEGMFTAVGDDDQSIYAWRGANMENLRKMQ 259
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
+D+ K I+L +NYRST I++ A+ +I++N K K + + G + + C +E
Sbjct: 260 EDYPQMKVIKLEQNYRSTARILKIANKVIENNPKLFT-KKLWSQFGEGEIVKVVACQSEQ 318
Query: 590 AQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG-VAFY 648
+ +++ +I++ G Y A+LYR ++F+ A R ++P+ + G +F+
Sbjct: 319 HEADWVVSQIVKQKLVG-GDKTQYADFAVLYRGNHQARIFEEALRSARVPYQLSGGQSFF 377
Query: 649 RKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID-HIDKISTI---RKCS 704
K ++ +++ LR L +D P AFL K+ + D + K++T +CS
Sbjct: 378 DKAEIKDVLSYLRL-LANPNDDP------AFLRAVTTPKRGIGDVTLGKLNTYAHEHECS 430
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKY 764
AA + R L ++MI R + S + N++ +
Sbjct: 431 LYEAAQTEEALALLNHTNRQYLQA------FMDMIES-YRAKAETSEAGELIHNLLKE-- 481
Query: 765 LLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINV 824
+D++ L NE+ + + D+T +L K +QD K I +
Sbjct: 482 -------IDYENHLLDNEEGKAGEIKWRNVTDLTGWLERKG---------EQDGKNIIEL 525
Query: 825 -----LKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
L ++ SE E ++V L+T+H SKGLE+ VF+ E +P
Sbjct: 526 AQTIALMTLLEGKSEEEV-----------DAVKLSTLHASKGLEYPYVFLVGCEEGILP- 573
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM---MDANWQLLQPSRFLKEIP 936
N ++ E +VEEERRL+YV +TRA+++L + + + WQ +PSRF+ E+P
Sbjct: 574 ---HNDSIEED--NVEEERRLMYVGITRAKRQLTLTHCLKRKKQGTWQFPEPSRFIDEMP 628
Query: 937 H 937
Sbjct: 629 Q 629
>gi|229524876|ref|ZP_04414281.1| ATP-dependent DNA helicase Rep [Vibrio cholerae bv. albensis VL426]
gi|229338457|gb|EEO03474.1| ATP-dependent DNA helicase Rep [Vibrio cholerae bv. albensis VL426]
Length = 671
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 203/735 (27%), Positives = 357/735 (48%), Gaps = 99/735 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK G NI A+TFT AA
Sbjct: 3 LNPRQDEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ +GK ++ L +STFH+ L + R + L + F ++
Sbjct: 62 EMKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ L DG +R +L ++S++K D +
Sbjct: 110 ---DQDQLALLKELTEKQL--DGDKDLLR--------LLLSTISNWK--------NDMLT 148
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
+A E ++ A E Y ++S NALD+ DLI V LL + EV Q +
Sbjct: 149 PPQAKAMAKGE----QQQLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEEVRQRW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKD 531
++ + ++VDE+QDT+ QY L+++L R+T+VGDDDQSI+S+ GA +D
Sbjct: 205 RNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGED 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F + K I+L +NYRST I+ AA+ LI +N Q K + ++ + G K+ + +NED +
Sbjct: 265 FPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQ-KALFSELAEGEKLKVILANNEDHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+ +I+ H + Y AILYR ++ + + + ++P+ + G +F+ +
Sbjct: 324 AERVTAEIIAHKF---LNRTEYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFAR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR + DD + R+ ++E ++ + + +R S +A+
Sbjct: 381 AEIKDIMAYLRVLVNPDDDNAFLRIVNT---PKREIGPATLEKLGSYANMRGKSLFTASF 437
Query: 711 DI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQR 769
++ +SG L R+ L I+ R ++ AV V ++ + +L E
Sbjct: 438 ELGLEQHLSG----RGLENLRRFTEWLVTIADNAERGNTVEAVRALVRDIRYEDWLYETS 493
Query: 770 AVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEG-NVDQDKKGCINVLKAF 828
A + + +V+D S + A EG N DQ +K LK
Sbjct: 494 ASP---------------KAAEMRMKNVSDLYS--WIVADLEGDNPDQQEK----TLKEV 532
Query: 829 IDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVN 888
+ ++ R+ R + +D+ ++V L T+H SKGLE+ V++ A E +P H+ +++
Sbjct: 533 VQRLTLRDMME-RGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILP--HQ--TSID 587
Query: 889 EKGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLLQP--SRFLKEIPHHLREVQAE 945
E+ +VEEERRL+YV +TRA+++L F++ +L++P SRFL E+P E + +
Sbjct: 588 EE--NVEEERRLMYVGITRAQRELTFMVCKERRQFGELIKPTQSRFLDELPQEDIEWEVK 645
Query: 946 QSVQDQHENIPEGTA 960
+ Q E + +G A
Sbjct: 646 KKPVTQEERMAKGQA 660
>gi|313106720|ref|ZP_07792937.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa 39016]
gi|386061473|ref|YP_005977995.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa M18]
gi|386068951|ref|YP_005984255.1| ATP-dependent DNA helicase [Pseudomonas aeruginosa NCGM2.S1]
gi|424943903|ref|ZP_18359666.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa NCMG1179]
gi|451987059|ref|ZP_21935221.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa 18A]
gi|310879439|gb|EFQ38033.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa 39016]
gi|346060349|dbj|GAA20232.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa NCMG1179]
gi|347307779|gb|AEO77893.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa M18]
gi|348037510|dbj|BAK92870.1| ATP-dependent DNA helicase [Pseudomonas aeruginosa NCGM2.S1]
gi|451755374|emb|CCQ87744.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa 18A]
Length = 658
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 189/706 (26%), Positives = 326/706 (46%), Gaps = 114/706 (16%)
Query: 260 MSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAASEMRDRIGSIVGK 304
+ PLL++AG GSGK GI I+A+TFT AA EM++R+G+++
Sbjct: 4 VGGPLLVLAGAGSGKTSVITRKIAYLVQQCGIRAQYIVAVTFTNKAAREMKERVGTLLRG 63
Query: 305 ATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVRLLENEKILVVK 364
K LT+STFH+ L + R E+L F I+ + + + ++ K
Sbjct: 64 GEGKGLTVSTFHNLGLNIIRKEHERLGYKPGFSIFDESDIKALLTD----------IMQK 113
Query: 365 RISTDMLTTDG------HFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDVAKASG 418
S D DG + G + L + L
Sbjct: 114 EYSGD----DGVDEIKNYIGAWKNDLILPEEAL------------------------EKA 145
Query: 419 KTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKA 478
+ P E + A + +Y LR+ NA+D+ DLI VKL P+V Q++Q+ +
Sbjct: 146 RNPKE------QTAAIVYLHYQRTLRAYNAVDFDDLILQPVKLFQEHPDVLQKWQNKVRY 199
Query: 479 IIVDEFQDTSAMQYSLLQILASHN-RITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKE 537
++VDE+QDT+A QY L+++L + T+VGDDDQSI+++ GA ++DF + K
Sbjct: 200 MLVDEYQDTNASQYLLVKLLVKDRAQFTVVGDDDQSIYAWRGARPENLMQLKEDFPSLKV 259
Query: 538 IRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIID 597
+ L +NYRST I++ A+ LI +N + K + ++ HG I + C NEDA+ I
Sbjct: 260 VMLEQNYRSTSRILKCANVLIANNPHVFE-KQLWSEMGHGDPIRVIRCRNEDAEAERIAM 318
Query: 598 KI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRKKVVR 654
+I L + P Y AILYR K+ + + +IP+ + G +F+ ++ V+
Sbjct: 319 EILTLHLRTERP-----YSEFAILYRGNHQAKLMELKLQHHQIPYRLSGGTSFFGRQEVK 373
Query: 655 AIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFG 714
+++ R + DD + RV + +E ++ + +T RK S + AACD G
Sbjct: 374 DLMSYFRLLVNPDDDNAFLRVIN---VPRREIGSATLEKLGNYATQRKIS-MYAACDEMG 429
Query: 715 -AKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVD 773
A+ + +L + ++ + +RR+ + + I + +M V+D
Sbjct: 430 LAEHLDSRFHERLQRFKRWM-------DGIRRQCAENEPIAVLRSM-----------VMD 471
Query: 774 FDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYIS 833
D L ++ V ++ +++V F + +++D++G + + +A I +
Sbjct: 472 IDYENWLRQNASSDKVAEFRMSNVW------FLIEALKNTLERDEEGDMTIEQA-IAKLV 524
Query: 834 ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTS 893
R+ + + + V + T+H SKGLE+ VF+ E +P + +
Sbjct: 525 LRDMLERQQEEEEGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPHRSSI------EADT 578
Query: 894 VEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEIP 936
VEEERRL YV +TRAR+ L + + + + PSRFL E+P
Sbjct: 579 VEEERRLAYVGITRARQNLAMTFAAKRKQYGEIIDCSPSRFLDELP 624
>gi|307610545|emb|CBX00132.1| DNA helicase II [Legionella pneumophila 130b]
Length = 721
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 202/735 (27%), Positives = 336/735 (45%), Gaps = 119/735 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ LN++Q +A + +L++AG GSGK +SP ILA+TFT
Sbjct: 7 LKGLNEKQRDAVTSPLGN-MLVLAGAGSGKTKVLVSRIAWLIEEQHLSPHAILAVTFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR R+ S++ T L + TFH +L R H ++ +F I Q R
Sbjct: 66 AAGEMRSRLSSMLSTPTLG-LWVGTFHGLCHRLLRRHYKEANLPEQFHILDSEDQAR--- 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
V+KR+ + +N +++ Q F
Sbjct: 122 ------------VIKRV-----------------ILSLN----LDPEQWQVKQAQAF--- 145
Query: 410 GMDVAKASGKTPAEFRKIG---DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
++ K G P + + +I + Y + ++ +D+ +L+ + +LL
Sbjct: 146 -INSKKDEGLRPQHINALHYGPTKTLVSIYKAYEDVCQTSGVIDFAELLLRTHELLRDNE 204
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGF 525
E+ Y++ ++AI+VDEFQDT+ +QY+ +++LA H + VGDDDQSI+ + GA +
Sbjct: 205 EILAHYRERFQAILVDEFQDTNTIQYAWIRLLAGDHTAVLAVGDDDQSIYGWRGAKVENI 264
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
F DF + + IRL +NYRST I+ AA++LI +N R K + T S G KI++
Sbjct: 265 QQFIHDFKDTQIIRLEQNYRSTAMILNAANALIHNNSTRMG-KELWTAGSEGEKILVYSA 323
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-G 644
NE + F+ ++I + G S IA+LYR +V + A I + I+ G
Sbjct: 324 FNELDEARFVTERIGMELNQG----ASADEIAVLYRSNAQSRVLEEALLRAGIAYRIYGG 379
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCS 704
V F+ + ++ +A LR + DD + RV + ++ +D + + + +CS
Sbjct: 380 VRFFDRAEIKDTLAYLRLLVNPNDDTAFERVVN---FPTRGIGEKTLDEVRQYARAEQCS 436
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKY 764
A+ I + +G +R L + + ++I KL +V K
Sbjct: 437 LWGASKGIL--QSTGLGQRGSLALAKFI----DLIEKL--------------QVVVANKE 476
Query: 765 LLEQRA-VVDFDG-----GKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
L EQ + V+ G K+ + ++ R D L AAK + + D+
Sbjct: 477 LDEQISDVIQHSGLYAHFSKIKGDKSESR----------VDNLQELINAAK-QFRYEYDE 525
Query: 819 KGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
+ + ++ +F+ + S E Q ++E SV L T+H +KGLE+ IVF+ E P
Sbjct: 526 EEKLPLVNSFLAHASLESGE---LQADEHERSVHLMTLHAAKGLEFPIVFLVGMEEGIFP 582
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSRFLKEI 935
++ E G +EEERRL YV MTRA +KL + Y + + + + SRFL+EI
Sbjct: 583 ----GRQSIEEPG-RLEEERRLCYVGMTRAMRKLVLSYAEVRRQYGREEYHRSSRFLREI 637
Query: 936 PHH-LREVQAEQSVQ 949
P L EV+ + Q
Sbjct: 638 PQQFLDEVRVKSRSQ 652
>gi|312622478|ref|YP_004024091.1| uvrd/rep helicase [Caldicellulosiruptor kronotskyensis 2002]
gi|312202945|gb|ADQ46272.1| UvrD/REP helicase [Caldicellulosiruptor kronotskyensis 2002]
Length = 714
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 206/725 (28%), Positives = 342/725 (47%), Gaps = 113/725 (15%)
Query: 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GIS-PSNILAMTFT 287
++L+ LN+QQ EA PLL++AG GSGK G++ P NILA+TFT
Sbjct: 2 EWLKELNEQQKEAVLS-TEGPLLVLAGAGSGKTRVITYRIAYILNMGLADPGNILAITFT 60
Query: 288 TAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
AA EM++RI +V + E+ +STFH+ ++ R A + ++ F+I+ + +
Sbjct: 61 NKAADEMKERIKRLVSTQSFSEMWVSTFHAACARILRMEAHNIGFSNNFVIFDTQDRNQL 120
Query: 348 IIEAVRLL--ENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNK 405
+ E L + EK+ D+ H ++ L
Sbjct: 121 LKECFDKLNIDPEKL--------DIRYVSRHISNLKNQLI-------------------- 152
Query: 406 FERDGMDVAKASGKTPAEFRKIGDEIG--AAILENYNGILRSCNALDYHDLISCSVKLLS 463
P++ + G+ G + + YN +L+ NA D+ DL+ +V L
Sbjct: 153 --------------GPSDVYRYGEVDGRVVEVYKLYNKLLKEYNAFDFDDLLYYTVVLFE 198
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADI 522
T P++ ++YQ+ +K I+VDE+QDT+ Q+ + +L+ H I +VGDDDQSI+SF GA+I
Sbjct: 199 TNPDILEKYQNKFKYILVDEYQDTNHAQFYFVYLLSQKHRNICVVGDDDQSIYSFRGANI 258
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
F K F + K I+L +NYRST+ I+ AA+ +I++N R + K + TDN G KI +
Sbjct: 259 KNILEFEKVFSDAKVIKLEKNYRSTKTILSAANEVIKNNNYR-KFKKLWTDNIDGEKIFL 317
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI 642
+E + F+ + +G S I +LYR F+ A +P+ +
Sbjct: 318 YSAFDEVNEAEFVASSVKNLIESG----ISPSEIGVLYRTNAQSVNFENALSAYSVPYKV 373
Query: 643 HG-VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
G + FY +K ++ IIA LR DD R+ +R I + STI
Sbjct: 374 VGALRFYERKEIKDIIAYLRLITNPHDDLSLFRIINV--------PRRGIGN----STIE 421
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
K +S ++ I +R++ +K T E ++ + + A +++
Sbjct: 422 KVKVLSEEYNVSAYTI--LLERAKFNFDKK---TYERLNGFISLIEDLKAEAENLSVSAA 476
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLA-DVTDFLSTKFTAAKEEGNVDQDKKG 820
K +LE+ ++ LL+ +S ++ A ++ +ST A EE N +
Sbjct: 477 IKLVLEKTGYLE----SLLSS----KSEEEFQRAKNIEQLIST--AAIFEEENEEP---- 522
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
L+ F++ I+ +E TQ+ E V+L T+H +KGLE+++VF+ E PLV
Sbjct: 523 ---TLQNFLNSIT-LSSEDEDTQK---EEKVSLMTVHAAKGLEFEVVFLTGLEEGLFPLV 575
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIPH 937
+ +EEERRL YVA+TRA+K L + Y + + Q S F++EIP
Sbjct: 576 RAEEPI--DAEKELEEERRLCYVAITRAKKLLVLTYANNRRVFGRFSSRQRSCFIEEIPQ 633
Query: 938 HLREV 942
+V
Sbjct: 634 RYIQV 638
>gi|298160822|gb|EFI01840.1| ATP-dependent DNA helicase Rep [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 669
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 190/726 (26%), Positives = 323/726 (44%), Gaps = 125/726 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+AMTFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ + LT+STFH+ L + R +L F I+
Sbjct: 60 AAREMKERVGTLLRGGEGRGLTVSTFHNLGLNIIRKEHTRLGYKPGFSIFDETD------ 113
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
VK + TD++ Q D
Sbjct: 114 -------------VKALMTDIM------------------------------QKEYSGDD 130
Query: 410 GMDVAK---ASGKT----PAEF----RKIGDEIGAAILENYNGILRSCNALDYHDLISCS 458
G+D K S K PA+ R ++ A + +Y L++ NA+D+ DLI
Sbjct: 131 GVDEIKNMIGSWKNDLILPADALENARNPKEQTAAIVYTHYQRTLKAYNAVDFDDLILLP 190
Query: 459 VKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSF 517
VKL ++ +++Q+ + ++VDE+QDT+A QY L+++L S ++ T+VGDDDQSI+++
Sbjct: 191 VKLFQEHADILEKWQNKVRYLLVDEYQDTNASQYLLVKLLIGSRHQFTVVGDDDQSIYAW 250
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GA + D+ + K + L +NYRST I+ A+ LI +N + K + ++ HG
Sbjct: 251 RGARPENLMLLKDDYPSLKVVMLEQNYRSTSRILRCANVLISNNPHAFE-KQLWSEMGHG 309
Query: 578 SKIIIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
+I + C NEDA+ + +I L ++ P Y AILYR K+ +
Sbjct: 310 DEIRVIRCRNEDAEAERVAMEILTLHLRTDRP-----YSDFAILYRGNYQAKLIELKLHH 364
Query: 636 RKIPFNIHGV-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
++P+ + G +F+ ++ V+ ++A R + DD + RV + +E ++ +
Sbjct: 365 HQVPYRLSGGNSFFGRQEVKDLMAYFRLLVNPDDDNAFLRVIN---VPRREIGSTTLEKL 421
Query: 695 DKISTIRKCSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI 753
+T RK S +A +I G + + +L R + + V
Sbjct: 422 GNYATERKVSMYAATEEIGLGEHLDSRY-----------------TDRLQRFKRWMDGVR 464
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
A P L + V+D D L +++ Y +++V F +
Sbjct: 465 QQCAQNDPIAAL--RSMVMDIDYENWLRQNSSSEKAADYRMSNVW------FLIEALKNT 516
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+++D++G + + +A I + R+ + + D V + T+H SKGLE+ VF+
Sbjct: 517 LEKDEEGGMTIEEA-IGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGME 575
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSR 930
E +P + ++EEERRL YV +TRAR+ L + + + PSR
Sbjct: 576 EEILPHRSSI------EADTIEEERRLAYVGITRARQTLAFTFAAKRKQYGEIIDCAPSR 629
Query: 931 FLKEIP 936
FL E+P
Sbjct: 630 FLDELP 635
>gi|443473909|ref|ZP_21063930.1| ATP-dependent DNA helicase Rep [Pseudomonas pseudoalcaligenes
KF707]
gi|442904844|gb|ELS29759.1| ATP-dependent DNA helicase Rep [Pseudomonas pseudoalcaligenes
KF707]
Length = 670
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 189/719 (26%), Positives = 333/719 (46%), Gaps = 109/719 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI +I+A+TFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAYLVQQCGIRAQHIVAVTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ S++ + K LT+STFH+ L + R +L F I+
Sbjct: 60 AAREMKERVSSLLRGSEGKGLTVSTFHNLGLNIIRKEHSRLGYKPGFSIFDESD------ 113
Query: 350 EAVRLLENEKILVVKRISTDMLTTD--GHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
+K + TD++ + G G ++ N ++
Sbjct: 114 -------------IKALLTDIMQKEYSGDDGVDEIKNYIGN-----------------WK 143
Query: 408 RDGM--DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
D + D A A + P E + A + +Y L++ NA+D+ DLI VKL
Sbjct: 144 NDLILPDEALARARNPKE------QTAAIVYLHYQRTLKAYNAVDFDDLILLPVKLFQDN 197
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-RITIVGDDDQSIFSFNGADISG 524
P++ +++Q + ++VDE+QDT+A QY L+++L H + T+VGDDDQSI+++ GA
Sbjct: 198 PDILEKWQHRVRYMLVDEYQDTNASQYLLVKLLVQHRAQFTVVGDDDQSIYAWRGARPEN 257
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
++DF + K + L +NYRST I++ A+ LI +N + K + ++ G I +
Sbjct: 258 LMQLKEDFPSLKVVMLEQNYRSTSRILKCANILIANNPHVFE-KQLWSEMGVGDPIRVIR 316
Query: 585 CHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI 642
C NEDA+ I +I L + P Y AILYR K+ + + +IP+ +
Sbjct: 317 CRNEDAEAERIAMEILTLHLRTQRP-----YSEFAILYRGNHQAKLMELKLQHHQIPYRL 371
Query: 643 H-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
G +F+ ++ V+ +++ R + DD + RV + +E ++ + +T R
Sbjct: 372 SGGTSFFGRQEVKDLMSYFRLLVNPDDDNAFLRVIN---VPRREIGSTTLEKLGNYATER 428
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
S + AACD G + ++ Q K + VR++ + + I ++ +M
Sbjct: 429 GIS-MYAACDEMGLSEHLDSRFTERLQRFKRFM------DKVRQQCAQNDPIAALRSM-- 479
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
V+D D + ++ V + + +V F + +++D++G
Sbjct: 480 ---------VMDIDYENWIRQNASSDKVADFRMGNVW------FLVDALKNTLERDEEGG 524
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
+ + +A I + R+ + + + + V + T+H SKGLE+ VF+ E +P
Sbjct: 525 MTIEEA-IAKLVLRDMLERQQEEEEGADGVQMMTLHASKGLEFPYVFIMGVEEDILPHRS 583
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEIPH 937
+ ++EEERRL YV +TRAR+ L + + + + PSRFL+E+P
Sbjct: 584 SI------EADTIEEERRLAYVGITRARQNLAMTFAAKRKQYGEIIDCSPSRFLEELPQ 636
>gi|319638182|ref|ZP_07992945.1| ATP-dependent DNA helicase [Neisseria mucosa C102]
gi|317400455|gb|EFV81113.1| ATP-dependent DNA helicase [Neisseria mucosa C102]
Length = 666
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 189/720 (26%), Positives = 332/720 (46%), Gaps = 123/720 (17%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN QQ +AA + PLL++AG GSGK G P + A+TFT AA+
Sbjct: 3 LNPQQ-QAAVQYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAT 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ ++ K+ + LTI TFHS +++ R A + F +I+++
Sbjct: 62 EMQERVAKMLPKSQMRGLTICTFHSLGMKILREEANHIGYKKNF----------SILDST 111
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
++ KI+ ++L G +A + +
Sbjct: 112 ---DSAKII------GELLGGTGKEAIFKA-------------------------QHQIS 137
Query: 413 VAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
+ K KTP E + ++ A + +Y L+S A+D+ DLI LL EV
Sbjct: 138 LWKNDLKTPEEAVQTASNAWEQQTARVYASYQETLQSYQAVDFDDLIRLPAVLLQQNSEV 197
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDS 527
++Q + ++VDE QDT+ Q++L+++L + T VGDDDQSI+++ GA++
Sbjct: 198 RNKWQRRLRYLLVDECQDTNTCQFTLMKLLTGAEGMFTAVGDDDQSIYAWRGANMENLRK 257
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
++D+ K I+L +NYRST I++ A+ +I++N K K + + G + + C +
Sbjct: 258 MQEDYPQMKVIKLEQNYRSTARILKIANKVIENNPKLFT-KKLWSQFGEGEIVKVVACQS 316
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVA 646
E + +++ +I++ G Y A+LYR ++F+ A R +IP+ + G +
Sbjct: 317 EQHEADWVVSQIVKQKLVG-GDKTQYADFAVLYRGNHQARIFEEALRSARIPYQLSGGQS 375
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID-HIDKISTI---RK 702
F+ K ++ +++ LR L +D P AFL K+ + D + K++T +
Sbjct: 376 FFDKAEIKDVLSYLR-LLANPNDDP------AFLRAVTTPKRGIGDVTLGKLNTYAHEHE 428
Query: 703 CSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
CS AA + R L ++MI R + IS + N++ +
Sbjct: 429 CSLYEAAQTEEALALLNHTNRQHLQA------FMDMIES-YRAKAEISEAGELIHNLLRE 481
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
+D++ L NE+ + + D+T +L K +QD K I
Sbjct: 482 ---------IDYENHLLANEEGKAGEIKWRNVTDLTGWLEHKG---------EQDGKNII 523
Query: 823 NVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
+ + A + + + E ++V L+T+H SKGLE+ VF+ E +P
Sbjct: 524 ELAQTIALMTLLEGKGEEEV--------DAVKLSTLHASKGLEYPYVFLVGCEEGILP-- 573
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM---MDANWQLLQPSRFLKEIPH 937
N ++ E +VEEERRL+YV +TRA+++L + + + WQ +PSRF+ E+P
Sbjct: 574 --HNDSIEED--NVEEERRLMYVGITRAKRQLTLTHCLKRKKQGTWQFPEPSRFIDEMPQ 629
>gi|89073889|ref|ZP_01160396.1| putative ATP-dependent DNA helicase Rep [Photobacterium sp. SKA34]
gi|89050424|gb|EAR55925.1| putative ATP-dependent DNA helicase Rep [Photobacterium sp. SKA34]
Length = 671
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 199/735 (27%), Positives = 345/735 (46%), Gaps = 97/735 (13%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN +Q EA +S P L++AG GSGK NI A+TFT AA
Sbjct: 3 LNPRQTEA-VKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCDYKARNIAALTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G +G+ +K L +STFH+ L + R + L S F ++
Sbjct: 62 EMKERVGQTLGRQESKGLMVSTFHTLGLNIIRREYKHLGLKSSFSLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
+ +++ ++K ++ D L D + L S+S++K D +
Sbjct: 110 ---DQDQMALLKELTEDELEGDKD----------LLKQLMSSISNWK--------NDMLS 148
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
A A+ +E D++ A E Y +++ NALD+ DLI V LL EV + +
Sbjct: 149 PADATAHARSE----RDQLFAHCYEMYQRQMKAYNALDFDDLILMPVLLLRDNAEVRKHW 204
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQILASHN-RITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q+ + ++VDE+QDT+ QY +++L R T+VGDDDQSI+S+ GA KD
Sbjct: 205 QNRIRYLLVDEYQDTNTSQYLFVKLLVGERARFTVVGDDDQSIYSWRGAQPENLGLLNKD 264
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
F + K I+L +NYRST I+ A+ LI +N + K + ++ G+ + + NE+ +
Sbjct: 265 FPSLKVIKLEQNYRSTSRILRTANILIANNPHLFE-KALFSEIPDGAMLKVITAKNEEHE 323
Query: 592 CAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRK 650
+I +++ H + +Y AILYR ++F+ + + +IP+ I G +F+ +
Sbjct: 324 AEKVIGELIAHRF---MNNTAYKDYAILYRGNHQSRLFEKSLMQNRIPYKISGGTSFFSR 380
Query: 651 KVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAAC 710
++ I+A LR DD + R+ +E ++ + + +R S +A+
Sbjct: 381 SEIKDIMAYLRLLTNLDDDNAFLRIVNT---PRREIGPVTLEKLGTYANMRGKSLFAASF 437
Query: 711 DI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQR 769
++ +SG + L +L+ + V + + +VA + ++
Sbjct: 438 EMGLEQHLSG-----------RGLESLQRFTHWVNQLADNAERGDTVA--------VVRQ 478
Query: 770 AVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFI 829
V D L E + + + +V+D S TA E N D ++K LK +
Sbjct: 479 LVRDIHYEDWLYETSPSPKAAEMRMKNVSDLYSW-ITADLEGDNYDNEEK----TLKEVV 533
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
++ R+ R + D+ + V L T+H SKGLE+ VF+ E +P H+ +++E
Sbjct: 534 QRLTLRDMME-RGEDDDDADQVQLMTLHASKGLEFPYVFLVGTEEGILP--HQ--TSIDE 588
Query: 890 KGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEIPHHLREVQAEQ 946
+ +V+EERRL YV +TRA+++L + L +PSRFL E+P E ++E+
Sbjct: 589 E--NVDEERRLAYVGITRAQRELIFTLCKERRQYGELIKPEPSRFLYELPQDDLEWESER 646
Query: 947 SVQDQHENIPEGTAQ 961
E + +G A
Sbjct: 647 KPVSAEERMNKGQAH 661
>gi|418162151|ref|ZP_12798837.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA17328]
gi|353828194|gb|EHE08337.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA17328]
Length = 756
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 212/728 (29%), Positives = 333/728 (45%), Gaps = 119/728 (16%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAAS 292
+ND+Q EA LLI+AG GSGK ++P NILA+TFT AA
Sbjct: 1 MNDRQAEA-VQTTEGSLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAR 59
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R S+ ++ I+TFHS +++ R A+ + F I G+QR
Sbjct: 60 EMKERAYSL--NPATQDCLIATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRT------ 111
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
++KRI L D R L + S + L D
Sbjct: 112 ---------LMKRI-LKQLNLDPKKWNERTILGTI------SNAKNDLID---------D 146
Query: 413 VAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472
VA A A+ + +I A Y LR ++D+ DLI +++L P+V Y
Sbjct: 147 VAYA-----AQAGDMYTQIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPDVLTYY 201
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSFRKD 531
Q ++ I VDE+QDT+ QY L+++LAS I +VGD DQSI+ + GAD+ F KD
Sbjct: 202 QQKFQYIHVDEYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDFEKD 261
Query: 532 FLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQ 591
+ K + L NYRST+ I++AA+ +I++N R + KN+ T N+ G +I+ +E +
Sbjct: 262 YPKAKVVLLEENYRSTKTILQAANEVIKNNKNR-RPKNLWTQNADGEQIVYYRADDELDE 320
Query: 592 CAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFY 648
F+ I L + N + A+LYR + + A + IP+ + G FY
Sbjct: 321 AVFVARTIDELSRSQN-----FLHKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKFY 375
Query: 649 RKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR-----VIDHIDKISTIRKC 703
+K +R IIA L D+ + R+ E KR ++ I + ++
Sbjct: 376 SRKEIRDIIAYLNLIANLSDNISFERIIN--------EPKRGIGLGTVEKIRDFANLQNM 427
Query: 704 SFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQK 763
S + A+ +I + I G +S +L E + L SI+ ++ SV
Sbjct: 428 SMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHL-----SITELVESV------- 475
Query: 764 YLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN 823
LE+ VD +LN L S + + ++ +FLS + +V +++ G ++
Sbjct: 476 --LEKTGYVD-----ILNAQATLESKAR--VENIEEFLSVT-KNFDDTTDVTEEETG-LD 524
Query: 824 VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF 883
L F++ ++ +Q + VTL T+H +KGLE+ +VF+ E PL
Sbjct: 525 KLSRFLNDLALIADTDSGSQE---TSEVTLMTLHAAKGLEFPVVFLIGMEENVFPLSR-- 579
Query: 884 NGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL-------QPSRFLKEIP 936
E +EEERRL YV +TRA K ILY + +AN +LL +P+RF+ EI
Sbjct: 580 ---ATEDPDELEEERRLAYVGITRAEK---ILY-LTNANSRLLFGRTNYNRPTRFINEIS 632
Query: 937 HHLREVQA 944
L E Q
Sbjct: 633 SDLLEYQG 640
>gi|398976595|ref|ZP_10686501.1| ATP-dependent DNA helicase Rep [Pseudomonas sp. GM25]
gi|398139431|gb|EJM28432.1| ATP-dependent DNA helicase Rep [Pseudomonas sp. GM25]
Length = 669
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 189/717 (26%), Positives = 330/717 (46%), Gaps = 107/717 (14%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+AMTFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ + LT+ TFH+ L + R E+L F I+
Sbjct: 60 AAREMKERVGTLLRAGEGRGLTVCTFHNLGLNIIRKEHERLGYKPGFSIFDETD------ 113
Query: 350 EAVRLLENEKILVVKRISTDMLTTD--GHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
VK + TD++ + G G M+ A ++
Sbjct: 114 -------------VKSLMTDIMQKEYAGDDGVDEIK-NMIGA----------------WK 143
Query: 408 RDGMDVAKA--SGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
D + A+A + + P E + A + +Y L++ NA+D+ DLI VKL
Sbjct: 144 NDLILPAQALENARNPKE------QTAAIVYTHYQRTLKAFNAVDFDDLILLPVKLFEEH 197
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISG 524
++ +++Q+ + ++VDE+QDT+A QY L+++L N+ T+VGDDDQSI+++ GA
Sbjct: 198 ADILEKWQNKVRYLLVDEYQDTNASQYLLVKMLIGKRNQFTVVGDDDQSIYAWRGARPEN 257
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+ D+ + K + L +NYRST I+ A+ LI +N + K + ++ HG +I +
Sbjct: 258 LMLLKDDYPSLKVVMLEQNYRSTSRILRCANVLISNNPHEFE-KQLWSEMGHGDEIRVIR 316
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG 644
C NEDA+ + +IL S + Y AILYR K+ + + ++P+ + G
Sbjct: 317 CRNEDAEAERVAMEIL---SLHLRTDRPYSDFAILYRGNYQAKLIELKLQHHQVPYRLSG 373
Query: 645 V-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
+F+ ++ V+ ++A R + DD + RV + +E ++ + +T RK
Sbjct: 374 GNSFFGRQEVKDLMAYFRLIVNPDDDNAFLRVIN---VPRREIGSTTLEKLGNYATERKI 430
Query: 704 SFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S +A ++ G + F +L++ ++ + VR + + I+++ +M
Sbjct: 431 SMYAATDELGLGEHLDSRFT-DRLSRFKRFM-------DKVREQCAGEDPISALRSM--- 479
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
V+D D L ++ Y +++V F + +++D+ G +
Sbjct: 480 --------VMDIDYENWLRTNSSSDKAADYRMSNVW------FLIEALKNTLEKDEDGEM 525
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
V A I + R+ + + D V + T+H SKGLE+ VF+ E +P
Sbjct: 526 TVEDA-IGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPHRSS 584
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEIP 936
+ ++EEERRL YV +TRAR+ L + + + PSRFL E+P
Sbjct: 585 I------EADTIEEERRLAYVGITRARQTLAFTFAAKRKQYGEIIDCAPSRFLDELP 635
>gi|54297755|ref|YP_124124.1| DNA-dependent helicase II [Legionella pneumophila str. Paris]
gi|148359389|ref|YP_001250596.1| DNA dependent ATPase I and helicase II [Legionella pneumophila str.
Corby]
gi|296107435|ref|YP_003619135.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Legionella
pneumophila 2300/99 Alcoy]
gi|53751540|emb|CAH12958.1| DNA helicase II [Legionella pneumophila str. Paris]
gi|148281162|gb|ABQ55250.1| DNA dependent ATPase I and helicase II [Legionella pneumophila str.
Corby]
gi|295649336|gb|ADG25183.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Legionella
pneumophila 2300/99 Alcoy]
Length = 721
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 202/735 (27%), Positives = 336/735 (45%), Gaps = 119/735 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L+ LN++Q +A + +L++AG GSGK +SP ILA+TFT
Sbjct: 7 LKGLNEKQRDAVTSPLGN-MLVLAGAGSGKTKVLVSRIAWLIEEQHLSPHAILAVTFTNK 65
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR R+ S++ T L + TFH +L R H ++ +F I Q R
Sbjct: 66 AAGEMRSRLSSMLSTPTLG-LWVGTFHGLCHRLLRRHYKEANLPEQFHILDSEDQAR--- 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
V+KR+ + +N +++ Q F
Sbjct: 122 ------------VIKRV-----------------ILSLN----LDPEQWQVKQAQAF--- 145
Query: 410 GMDVAKASGKTPAEFRKIG---DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
++ K G P + + +I + Y + ++ +D+ +L+ + +LL
Sbjct: 146 -INSKKDEGLRPQHINALHYGPTKTLVSIYKAYEDVCQTSGVIDFAELLLRTHELLRDNE 204
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGF 525
E+ Y++ ++AI+VDEFQDT+ +QY+ +++LA H + VGDDDQSI+ + GA +
Sbjct: 205 EILAHYRERFQAILVDEFQDTNTIQYAWIRLLAGDHTAVLAVGDDDQSIYGWRGAKVENI 264
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
F DF + + IRL +NYRST I+ AA++LI +N R K + T S G KI++
Sbjct: 265 QQFVHDFKDTQIIRLEQNYRSTAMILNAANALIHNNSTRMG-KELWTAGSEGEKILVYSA 323
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-G 644
NE + F+ ++I + G S IA+LYR +V + A I + I+ G
Sbjct: 324 FNELDEARFVTERIGMELNQG----ASADEIAVLYRSNAQSRVLEEALLRVGIAYRIYGG 379
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCS 704
V F+ + ++ +A LR + DD + RV + ++ +D + + + +CS
Sbjct: 380 VRFFDRAEIKDTLAYLRLLVNPNDDTAFERVVN---FPTRGIGEKTLDEVRQYARAEQCS 436
Query: 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKY 764
A+ I + +G +R L + + ++I KL +V K
Sbjct: 437 LWDASKGILQS--TGLGQRGSLALAKFI----DLIEKL--------------QVVVANKE 476
Query: 765 LLEQRA-VVDFDG-----GKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
L EQ + V+ G K+ + ++ R D L AAK + + D+
Sbjct: 477 LDEQISDVIQHSGLYAHFSKIKGDKSESR----------VDNLQELINAAK-QFRYEYDE 525
Query: 819 KGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
+ + ++ +F+ + S E Q ++E SV L T+H +KGLE+ IVF+ E P
Sbjct: 526 EEELPLVNSFLAHAS---LESGELQADEHERSVHLMTLHAAKGLEFPIVFLVGMEEGIFP 582
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSRFLKEI 935
++ E G +EEERRL YV MTRA +KL + Y + + + + SRFL+EI
Sbjct: 583 ----GRQSIEEPG-RLEEERRLCYVGMTRAMRKLVLSYAEVRRQYGREEYHRSSRFLREI 637
Query: 936 PHH-LREVQAEQSVQ 949
P L EV+ + Q
Sbjct: 638 PQQFLDEVRVKSRSQ 652
>gi|227530244|ref|ZP_03960293.1| ATP-dependent DNA helicase PcrA [Lactobacillus vaginalis ATCC
49540]
gi|227349833|gb|EEJ40124.1| ATP-dependent DNA helicase PcrA [Lactobacillus vaginalis ATCC
49540]
Length = 761
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 210/757 (27%), Positives = 348/757 (45%), Gaps = 117/757 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +ND+Q EA PLL++AG GSGK G+ P NILA+TFT
Sbjct: 11 LDGMNDKQTEAVL-TTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKGVLPWNILAITFTNK 69
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G ++G+ +A+++ +STFH+ +++ R EKL F I +QR
Sbjct: 70 AAREMQERVGKLLGE-SARDIWVSTFHALCVRILRRDIEKLGYNRAFTIADTSEQR---- 124
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++KRI ++ F R+ L
Sbjct: 125 -----------TLMKRICAELNIDTKKFD-PRSIL------------------------S 148
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
+ AK + +TP ++ K + + + A + Y L + +LD+ DLI +++L
Sbjct: 149 AISNAKNALQTPDDYSKEANSMFENMVARAYKLYQRELEANQSLDFDDLIMKTIELFEKD 208
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISG 524
E + YQD + I VDE+QDT+ QY L+ +LA + + +VGD DQSI+ + GA+++
Sbjct: 209 QETLEFYQDKFHYIHVDEYQDTNDAQYKLVNMLAQGYKNLCVVGDADQSIYGWRGANMNN 268
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
+F D+ + L +NYRST+ I++AA+ +I +NV R + K + T+N G +I
Sbjct: 269 ILNFEHDYPQAHTVMLEQNYRSTQTILDAANEVIDNNVYRKK-KKLWTENGKGDQISYYR 327
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
NE + FI+ KI E Y AILYR ++ + F + +P+ +
Sbjct: 328 AQNEHDEAQFIVSKIKEEREKNN---YKYNDFAILYRTNAQSRMIEETFLKSSVPYTMVG 384
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI-----DHIDKIS 698
G FY +K +R I+A L + D + RV KR I DH+ + +
Sbjct: 385 GHKFYDRKEIRDILAYLTLIVNPQDSMSFERVVNT--------PKRGIGMTSVDHLREFA 436
Query: 699 TIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
S + AA ++ A T R ++ + +L+R +T A
Sbjct: 437 NDNNWSLLEAAENVDIANNISTRTRVKIDE----------FGQLMRN-------LTKQAE 479
Query: 759 MVPQKYLLEQRAVVDFDG-GKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQD 817
+ L E+ ++D G K L +D L S Q ++ +F S T +E + D+D
Sbjct: 480 FLNLTDLTEE--ILDKSGYNKALEQDKSLES--QARRENLDEFKSV--TQEYDEQHKDED 533
Query: 818 KKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
N ++ +++++ + + +VTL T+H +KGLE+ +VF+ E
Sbjct: 534 D----NNIQKITNFLADLALVSDQDDVDEQAPAVTLMTLHAAKGLEFPVVFLVGMEEGIF 589
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKE 934
PL +EEERRL YV +TRA+KKL++ ++ Q QPSRF++E
Sbjct: 590 PLSRAILED-----DELEEERRLAYVGITRAKKKLYLTNAFSRLLYGRIQRNQPSRFVEE 644
Query: 935 IPHHLREVQAEQSVQD-QHENIPEGTAQFTINLPREE 970
I L + + +Q + + +P G T RE+
Sbjct: 645 INPDLLKFENDQPAERLGGQKLPFGGEAATATTYREQ 681
>gi|452879547|ref|ZP_21956636.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa VRFPA01]
gi|452183917|gb|EME10935.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa VRFPA01]
Length = 669
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 192/721 (26%), Positives = 332/721 (46%), Gaps = 115/721 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+A+TFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAYLVQQCGIRAQYIVAVTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+GS++ + LT+STFH+ L + R E+L F I+ + +
Sbjct: 60 AAREMKERVGSLLRGGEGRGLTVSTFHNLGLNIIRKEHERLGYKPGFSIFDESDIKALLT 119
Query: 350 EAVRLLENEKILVVKRISTDMLTTDG------HFGYMRASLFMMNAMLFFSMSSFKLCQY 403
+ ++ K S D DG + G + L + L
Sbjct: 120 D----------IMQKEYSGD----DGVDEIKNYIGAWKNDLILPEEAL------------ 153
Query: 404 NKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463
+ P E + A + +Y LR+ NA+D+ DLI VKL
Sbjct: 154 ------------EKARNPRE------QTAAIVYLHYQRTLRAYNAVDFDDLILQPVKLFQ 195
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-RITIVGDDDQSIFSFNGADI 522
P++ Q++Q+ + ++VDE+QDT+A QY L+++L + T+VGDDDQSI+++ GA
Sbjct: 196 EHPDILQKWQNRVRYMLVDEYQDTNASQYLLVKLLVKDRAQFTVVGDDDQSIYAWRGARP 255
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
++DF + K + L +NYRST I++ A+ LI +N + K + ++ HG I +
Sbjct: 256 ENLMQLKEDFPSLKVVMLEQNYRSTSRILKCANVLIANNPHVFE-KQLWSEMGHGDPIRV 314
Query: 583 KECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
C NEDA+ I +I L + P Y AILYR K+ + + +IP+
Sbjct: 315 IRCRNEDAEAERIAMEILTLHLRTERP-----YSEFAILYRGNHQAKLMELKLQHHQIPY 369
Query: 641 NIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIST 699
+ G +F+ ++ V+ +++ R + DD + RV + +E ++ + +T
Sbjct: 370 RLSGGTSFFGRQEVKDLMSYFRLLVNPDDDNAFLRVIN---VPRREIGSATLEKLGNYAT 426
Query: 700 IRKCSFISAACDIFG-AKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758
R S + AACD G A+ + +L + ++ + +RR+ + + I + +
Sbjct: 427 QRNIS-MYAACDEMGLAEHLDSRFHERLQRFKRWM-------DGIRRQCAENEPIAVLRS 478
Query: 759 MVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDK 818
M V+D D L ++ V ++ +++V F + +++D+
Sbjct: 479 M-----------VMDIDYENWLRQNASSDKVAEFRMSNVW------FLIEALKNTLERDE 521
Query: 819 KGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
+G + + +A I + R+ + + + V + T+H SKGLE+ VF+ E +P
Sbjct: 522 EGDMTIEQA-IAKLVLRDMLERQQEEEEGAEGVQMMTLHASKGLEFPYVFIMGMEEEILP 580
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEI 935
+ +VEEERRL YV +TRAR+ L + + + + PSRFL E+
Sbjct: 581 HRSSI------EADTVEEERRLAYVGITRARQNLAMTFAAKRKQYGEIIDCSPSRFLDEL 634
Query: 936 P 936
P
Sbjct: 635 P 635
>gi|392422823|ref|YP_006459427.1| ATP-dependent DNA helicase Rep [Pseudomonas stutzeri CCUG 29243]
gi|390985011|gb|AFM35004.1| ATP-dependent DNA helicase Rep [Pseudomonas stutzeri CCUG 29243]
Length = 669
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 187/718 (26%), Positives = 339/718 (47%), Gaps = 109/718 (15%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI +I+AMTFT
Sbjct: 1 MSRLNPRQQEA-VNYVGGPLLVLAGAGSGKTSVITRKIAYLVQHCGIQARHIVAMTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+GS++ A A+ LT+STFH+ + + R ++ F I+ G
Sbjct: 60 AAREMKERVGSLLKGAEARGLTVSTFHNLGMNIIRKEYARMGYKPGFSIFDDGD------ 113
Query: 350 EAVRLLENEKILVVKRISTDMLTTD--GHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
+K + TD++ + G G ++ + ++
Sbjct: 114 -------------IKALLTDIMQKEYSGDDGADEIKNYI-----------------DSWK 143
Query: 408 RDGM--DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
D + D A A+ + P E + A + +Y L++ NA+D++DLI VKL
Sbjct: 144 NDLILPDEALANARNPKE------QTAAIVYLHYQRTLKAYNAVDFNDLILLPVKLFQEH 197
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISG 524
++ +++Q+ + ++VDE+QDT+A QY L+++L N+ T+VGDDDQSI+++ GA
Sbjct: 198 ADILEKWQNRIRYLLVDEYQDTNASQYLLVKLLVGMRNQFTVVGDDDQSIYAWRGARPEN 257
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
++D+ + K + L +NYRST I++ A+ LI +N + K + ++ HG +I +
Sbjct: 258 LMLLKEDYPSLKVVMLEQNYRSTSRILKCANILIANNPHVFE-KQLWSEMGHGDEIRVIR 316
Query: 585 CHNEDAQCAFIIDKIL-EHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH 643
NEDA+C + +IL EH + Y AILYR K+ + + +IP+ +
Sbjct: 317 TRNEDAECERVALEILTEHLR----TQRPYSDFAILYRGNYQAKLMELKLQHHQIPYRLS 372
Query: 644 -GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRK 702
G +F+ ++ V+ +++ R + DD + RV + +E ++ + ++ R
Sbjct: 373 GGTSFFARQEVKDLMSYFRLLVNPDDDNAFLRVIN---VPRREIGSTTLEKLGNYASERG 429
Query: 703 CSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
S +AA +I GA + + +L++ + + VR++ + + I ++ +M
Sbjct: 430 ISMYAAADEIGLGAHLDSRYA-ERLSRFKHWMDN-------VRQQCAQNDPIAAIRSM-- 479
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
V+D D L ++ V + +V F + +D+D+ G
Sbjct: 480 ---------VMDIDYENWLRQNASSDKVADARMGNVW------FLVDALKSTLDKDEDGD 524
Query: 822 INVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVH 881
+ + A I + R+ + + + V + T+H SKGLE+ V++ E +P
Sbjct: 525 MTIEDA-IGKLVLRDMLERQQEEEEGAEGVQMMTMHASKGLEFPSVYIIGFEEEILPHRS 583
Query: 882 EFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEIP 936
+ ++EEERRL YV +TRA++ L + + + + PSRFL E+P
Sbjct: 584 SI------EADTIEEERRLAYVGITRAKRNLALTFAAKRKQYGEVIDCTPSRFLDELP 635
>gi|90416555|ref|ZP_01224486.1| ATP-dependent DNA helicase Rep [gamma proteobacterium HTCC2207]
gi|90331754|gb|EAS46982.1| ATP-dependent DNA helicase Rep [gamma proteobacterium HTCC2207]
Length = 676
Score = 217 bits (552), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 200/716 (27%), Positives = 323/716 (45%), Gaps = 99/716 (13%)
Query: 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAA 290
+SLN QQ +AA + PLL++AG GSGK GI NI A+TFT A
Sbjct: 3 KSLNPQQ-QAALKYIDGPLLVLAGAGSGKTSVITQKIAYLVEECGIPARNIAAVTFTNKA 61
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIE 350
A EM+ R+ S++ A + LT+STFH+ L + RS + L F I R + E
Sbjct: 62 AREMKARVASLLSGADGRGLTVSTFHNLGLNIIRSEIKALGFKPGFSILDQEDCRNLLKE 121
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
LL L K I T T N +L +
Sbjct: 122 ---LLARNTELDEKLIDTAQNTISN----------WKNGLL-----------------EP 151
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
VA AS ++ A + E Y L++ NA+D+ DLI V L PEV
Sbjct: 152 HQVASASASN-------SEQATAMLYERYQRALKAYNAVDFDDLIMTPVLLFRNKPEVLD 204
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDSFR 529
+++ + ++VDE+QDT+ QY L++ L + + +T+VGDDDQSI+++ GA +
Sbjct: 205 KWKRRIRYLLVDEYQDTNLAQYELVRTLVNDKQALTVVGDDDQSIYAWRGARPENLMQLQ 264
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
DF I+L +NYRST I++AA++LI +N K + ++ G + NED
Sbjct: 265 TDFPTLNIIKLEQNYRSTGRILKAANTLIANNPHLIS-KALWSELGPGDPLRFISSDNED 323
Query: 590 AQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVAFY 648
+C ++++I++ C Y A+LYR K+ + + + IP+ I G +FY
Sbjct: 324 DECERVVNEIIDMRLK---RRCKYSDFAVLYRGNYQAKIIEIKLQSQSIPYEITGGQSFY 380
Query: 649 RKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISA 708
K ++ I+A LR + DD R+ ++ ++ + + S R S A
Sbjct: 381 AKTEIKDIMAYLRLIINPDDDNAMLRIINT---PRRQIGPTTLEKLGEYSNKRTLSLYDA 437
Query: 709 ACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYL--L 766
++ ++ T + L + ++ ++ I++ V I A+ + ++ +YL L
Sbjct: 438 IDEV---GLTATMPANSLERLKRFKHWVQNINRNVYNGKPIEAINEMLDDI---EYLDWL 491
Query: 767 EQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCIN--V 824
+Q A D K DN +Q+LL + L TA EE D + I+ +
Sbjct: 492 KQNASSDHVAHK--RWDN-----VQFLLKQLAQVLKNDETATDEEKG-DSKIENAISKLI 543
Query: 825 LKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFN 884
L+ +D R + ++ V L T+H +KGLE+ VF+ E +P +
Sbjct: 544 LRDLLD----------REKEESADDKVQLMTLHAAKGLEFLHVFMVGMEEDILPHKNSVE 593
Query: 885 GAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSRFLKEIPH 937
G ++EEERRL YV +TRA++ L + + PSRF+ E+P
Sbjct: 594 GG------AIEEERRLAYVGITRAQRTLTMTSARQRTQFGDTSPTTPSRFVDELPE 643
>gi|398996853|ref|ZP_10699696.1| ATP-dependent DNA helicase Rep [Pseudomonas sp. GM21]
gi|398125654|gb|EJM15121.1| ATP-dependent DNA helicase Rep [Pseudomonas sp. GM21]
Length = 669
Score = 217 bits (552), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 191/726 (26%), Positives = 327/726 (45%), Gaps = 125/726 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
+ LN +Q EA + PLL++AG GSGK GI I+AMTFT
Sbjct: 1 MSRLNPRQQEAVSY-VGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+G+++ + LT+ TFH+ L + R +L F I+
Sbjct: 60 AAREMKERVGTLLKGGEGRGLTVCTFHNLGLNIIRKEHVRLGYKPGFSIFDETD------ 113
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
VK + TD++ Q D
Sbjct: 114 -------------VKALMTDIM------------------------------QKEYAGDD 130
Query: 410 GMDVAK---ASGKT----PAEF----RKIGDEIGAAILENYNGILRSCNALDYHDLISCS 458
G+D K S K PAE R ++ A + +Y L++ NA+D+ DLI
Sbjct: 131 GVDEIKNMIGSWKNDLILPAEALENARNPKEQTAAIVYTHYQRTLKAFNAVDFDDLILLP 190
Query: 459 VKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSF 517
VKL ++ +++Q+ + ++VDE+QDT+A QY L+++L + N+ T+VGDDDQSI+++
Sbjct: 191 VKLFQEHADILEKWQNKVRYLLVDEYQDTNASQYLLVKLLIGTRNQFTVVGDDDQSIYAW 250
Query: 518 NGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG 577
GA + D+ + K + L +NYRST I+ A+ LI +N + K + ++ HG
Sbjct: 251 RGARPENLMLLKDDYPSLKVVMLEQNYRSTSRILRCANVLISNNPHEFE-KQLWSEMGHG 309
Query: 578 SKIIIKECHNEDAQCAFIIDKI--LEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRE 635
+I + C NEDA+ + ++ L ++ P Y AILYR K+ + +
Sbjct: 310 DEIRVIRCRNEDAEAERVAVELLTLHLRTDRP-----YSDFAILYRGNYQAKLIELKLQH 364
Query: 636 RKIPFNIHGV-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI 694
+IP+ + G +F+ ++ V+ ++A R + DD + RV + +E ++ +
Sbjct: 365 HQIPYRLSGGNSFFGRQEVKDLMAYFRLIVNPDDDNAFLRVIN---VPRREIGSTTLEKL 421
Query: 695 DKISTIRKCSFISAACDI-FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVI 753
+T RK S +A +I G + F +L++ ++ + VR + + I
Sbjct: 422 GNYATERKISMYAATDEIGLGEHLDTRFT-DRLSRFKRFM-------DRVREQCAGEDPI 473
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
+++ +M V+D D L ++ Y + +V F +
Sbjct: 474 SALRSM-----------VMDIDYENWLRTNSSSDKAADYRMGNVW------FLIEALKNT 516
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
+++D++G + V A I + R+ + + D V + T+H SKGLE+ VF+
Sbjct: 517 LEKDEEGEMTVEDA-IGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGME 575
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSR 930
E +P + ++EEERRL YV +TRAR+ L + + + PSR
Sbjct: 576 EEILPHRSSI------EADTIEEERRLAYVGITRARQTLAFTFAAKRKQYGEIIDCAPSR 629
Query: 931 FLKEIP 936
FL E+P
Sbjct: 630 FLDELP 635
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,509,545,206
Number of Sequences: 23463169
Number of extensions: 666044543
Number of successful extensions: 1887258
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8431
Number of HSP's successfully gapped in prelim test: 7607
Number of HSP's that attempted gapping in prelim test: 1798305
Number of HSP's gapped (non-prelim): 51437
length of query: 1148
length of database: 8,064,228,071
effective HSP length: 154
effective length of query: 994
effective length of database: 8,745,867,341
effective search space: 8693392136954
effective search space used: 8693392136954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 83 (36.6 bits)