BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001127
(1148 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6GFF2|PCRA_STAAR ATP-dependent DNA helicase PcrA OS=Staphylococcus aureus (strain
MRSA252) GN=pcrA PE=3 SV=1
Length = 730
Score = 254 bits (650), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 219/726 (30%), Positives = 346/726 (47%), Gaps = 119/726 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +N +Q EA PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I K+ M G ++ L
Sbjct: 123 D---VLKNENI-DSKKFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTPA+ +K ++ A + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV + YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 203 PEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF KD+ I L +NYRST+ I+ AA+ +I++N +R + K + T N++G KI E
Sbjct: 263 ILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + F+I +I++H NG Y +AILYR +V + F + +P+ +
Sbjct: 322 AMTERDEAEFVIREIMKHQRNGK----KYQDMAILYRTNAQSRVLEETFMKSNMPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR + ++K+
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINV--------PKRGVGPSSVEKVQNYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + A G K+ +TQ + L E+I L++ + + I + + V
Sbjct: 430 LQNNISMFDALGEADFIGLSKK--VTQ--ECLNFYELIQSLIKEQEFLE--IHEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
QK + +L +N L S + L ++ +F+S E N +++
Sbjct: 484 QKSGYRE----------MLERENTLES--RSRLENIDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E +T EN VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEADT----------ENGVTLMTMHSAKGLEFPIVFIMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGT-SVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
+ A+ +G ++EERR+ YVA+TRA + L+I + M+ Q PSRFLKEI
Sbjct: 579 IR----AIKSEGDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEI 634
Query: 936 PHHLRE 941
P L E
Sbjct: 635 PESLLE 640
>sp|Q8NVT1|PCRA_STAAW ATP-dependent DNA helicase PcrA OS=Staphylococcus aureus (strain
MW2) GN=pcrA PE=3 SV=1
Length = 730
Score = 254 bits (650), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 218/725 (30%), Positives = 344/725 (47%), Gaps = 117/725 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +N +Q EA PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I K+ M G ++ L
Sbjct: 123 D---VLKNENI-DSKKFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTPA+ +K ++ A + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV + YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 203 PEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF KD+ I L +NYRST+ I+ AA+ +I++N +R + K + T N++G KI E
Sbjct: 263 ILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + F+I +I++H NG Y +AILYR +V + F + +P+ +
Sbjct: 322 AMTERDEAEFVIREIMKHQRNGK----KYQDMAILYRTNAQSRVLEETFMKSNMPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR + ++K+
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINV--------PKRGVGPSSVEKVQNYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + A G K+ +TQ + L E+I L++ + + I + + V
Sbjct: 430 LQNNISMFDALGEADFIGLSKK--VTQ--ECLNFYELIQSLIKEQEFLE--IHEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
QK + +L +N L S + L ++ +F+S E N +++
Sbjct: 484 QKSGYRE----------MLERENTLES--RSRLENIDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E +T EN VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEADT----------ENGVTLMTMHSAKGLEFPIVFIMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ +E ++EERR+ YVA+TRA + L+I + M+ Q PSRFLKEIP
Sbjct: 579 IRAIK---SEDDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIP 635
Query: 937 HHLRE 941
L E
Sbjct: 636 ESLLE 640
>sp|Q6G828|PCRA_STAAS ATP-dependent DNA helicase PcrA OS=Staphylococcus aureus (strain
MSSA476) GN=pcrA PE=3 SV=1
Length = 730
Score = 254 bits (650), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 218/725 (30%), Positives = 344/725 (47%), Gaps = 117/725 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +N +Q EA PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I K+ M G ++ L
Sbjct: 123 D---VLKNENI-DSKKFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTPA+ +K ++ A + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV + YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 203 PEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF KD+ I L +NYRST+ I+ AA+ +I++N +R + K + T N++G KI E
Sbjct: 263 ILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + F+I +I++H NG Y +AILYR +V + F + +P+ +
Sbjct: 322 AMTERDEAEFVIREIMKHQRNGK----KYQDMAILYRTNAQSRVLEETFMKSNMPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR + ++K+
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINV--------PKRGVGPSSVEKVQNYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + A G K+ +TQ + L E+I L++ + + I + + V
Sbjct: 430 LQNNISMFDALGEADFIGLSKK--VTQ--ECLNFYELIQSLIKEQEFLE--IHEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
QK + +L +N L S + L ++ +F+S E N +++
Sbjct: 484 QKSGYRE----------MLERENTLES--RSRLENIDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E +T EN VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEADT----------ENGVTLMTMHSAKGLEFPIVFIMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ +E ++EERR+ YVA+TRA + L+I + M+ Q PSRFLKEIP
Sbjct: 579 IRAIK---SEDDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIP 635
Query: 937 HHLRE 941
L E
Sbjct: 636 ESLLE 640
>sp|Q5HEL7|PCRA_STAAC ATP-dependent DNA helicase PcrA OS=Staphylococcus aureus (strain
COL) GN=pcrA PE=3 SV=1
Length = 730
Score = 254 bits (650), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 218/725 (30%), Positives = 344/725 (47%), Gaps = 117/725 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +N +Q EA PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I K+ M G ++ L
Sbjct: 123 D---VLKNENI-DSKKFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTPA+ +K ++ A + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV + YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 203 PEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF KD+ I L +NYRST+ I+ AA+ +I++N +R + K + T N++G KI E
Sbjct: 263 ILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + F+I +I++H NG Y +AILYR +V + F + +P+ +
Sbjct: 322 AMTERDEAEFVIREIMKHQRNGK----KYQDMAILYRTNAQSRVLEETFMKSNMPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR + ++K+
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINV--------PKRGVGPSSVEKVQNYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + A G K+ +TQ + L E+I L++ + + I + + V
Sbjct: 430 LQNNISMFDALGEADFIGLSKK--VTQ--ECLNFYELIQSLIKEQEFLE--IHEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
QK + +L +N L S + L ++ +F+S E N +++
Sbjct: 484 QKSGYRE----------MLERENTLES--RSRLENIDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E +T EN VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEADT----------ENGVTLMTMHSAKGLEFPIVFIMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ +E ++EERR+ YVA+TRA + L+I + M+ Q PSRFLKEIP
Sbjct: 579 IRAIK---SEDDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIP 635
Query: 937 HHLRE 941
L E
Sbjct: 636 ESLLE 640
>sp|Q53727|PCRA_STAA8 ATP-dependent DNA helicase PcrA OS=Staphylococcus aureus (strain
NCTC 8325) GN=pcrA PE=1 SV=3
Length = 730
Score = 254 bits (650), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 218/725 (30%), Positives = 344/725 (47%), Gaps = 117/725 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +N +Q EA PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I K+ M G ++ L
Sbjct: 123 D---VLKNENI-DSKKFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTPA+ +K ++ A + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV + YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 203 PEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF KD+ I L +NYRST+ I+ AA+ +I++N +R + K + T N++G KI E
Sbjct: 263 ILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + F+I +I++H NG Y +AILYR +V + F + +P+ +
Sbjct: 322 AMTERDEAEFVIREIMKHQRNGK----KYQDMAILYRTNAQSRVLEETFMKSNMPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR + ++K+
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINV--------PKRGVGPSSVEKVQNYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + A G K+ +TQ + L E+I L++ + + I + + V
Sbjct: 430 LQNNISMFDALGEADFIGLSKK--VTQ--ECLNFYELIQSLIKEQEFLE--IHEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
QK + +L +N L S + L ++ +F+S E N +++
Sbjct: 484 QKSGYRE----------MLERENTLES--RSRLENIDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E +T EN VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEADT----------ENGVTLMTMHSAKGLEFPIVFIMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ +E ++EERR+ YVA+TRA + L+I + M+ Q PSRFLKEIP
Sbjct: 579 IRAIK---SEDDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIP 635
Query: 937 HHLRE 941
L E
Sbjct: 636 ESLLE 640
>sp|P64319|PCRA_STAAN ATP-dependent DNA helicase PcrA OS=Staphylococcus aureus (strain
N315) GN=pcrA PE=1 SV=1
Length = 730
Score = 254 bits (650), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 218/725 (30%), Positives = 344/725 (47%), Gaps = 117/725 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +N +Q EA PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I K+ M G ++ L
Sbjct: 123 D---VLKNENI-DSKKFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTPA+ +K ++ A + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV + YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 203 PEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF KD+ I L +NYRST+ I+ AA+ +I++N +R + K + T N++G KI E
Sbjct: 263 ILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + F+I +I++H NG Y +AILYR +V + F + +P+ +
Sbjct: 322 AMTERDEAEFVIREIMKHQRNGK----KYQDMAILYRTNAQSRVLEETFMKSNMPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR + ++K+
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINV--------PKRGVGPSSVEKVQNYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + A G K+ +TQ + L E+I L++ + + I + + V
Sbjct: 430 LQNNISMFDALGEADFIGLSKK--VTQ--ECLNFYELIQSLIKEQEFLE--IHEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
QK + +L +N L S + L ++ +F+S E N +++
Sbjct: 484 QKSGYRE----------MLERENTLES--RSRLENIDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E +T EN VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEADT----------ENGVTLMTMHSAKGLEFPIVFIMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ +E ++EERR+ YVA+TRA + L+I + M+ Q PSRFLKEIP
Sbjct: 579 IRAIK---SEDDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIP 635
Query: 937 HHLRE 941
L E
Sbjct: 636 ESLLE 640
>sp|P64318|PCRA_STAAM ATP-dependent DNA helicase PcrA OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=pcrA PE=1 SV=1
Length = 730
Score = 254 bits (650), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 218/725 (30%), Positives = 344/725 (47%), Gaps = 117/725 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +N +Q EA PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I K+ M G ++ L
Sbjct: 123 D---VLKNENI-DSKKFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTPA+ +K ++ A + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV + YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 203 PEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF KD+ I L +NYRST+ I+ AA+ +I++N +R + K + T N++G KI E
Sbjct: 263 ILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + F+I +I++H NG Y +AILYR +V + F + +P+ +
Sbjct: 322 AMTERDEAEFVIREIMKHQRNGK----KYQDMAILYRTNAQSRVLEETFMKSNMPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR + ++K+
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINV--------PKRGVGPSSVEKVQNYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + A G K+ +TQ + L E+I L++ + + I + + V
Sbjct: 430 LQNNISMFDALGEADFIGLSKK--VTQ--ECLNFYELIQSLIKEQEFLE--IHEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
QK + +L +N L S + L ++ +F+S E N +++
Sbjct: 484 QKSGYRE----------MLERENTLES--RSRLENIDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E +T EN VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEADT----------ENGVTLMTMHSAKGLEFPIVFIMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ +E ++EERR+ YVA+TRA + L+I + M+ Q PSRFLKEIP
Sbjct: 579 IRAIK---SEDDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIP 635
Query: 937 HHLRE 941
L E
Sbjct: 636 ESLLE 640
>sp|Q8CRT9|PCRA_STAES ATP-dependent DNA helicase PcrA OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=pcrA PE=3 SV=1
Length = 729
Score = 249 bits (636), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 217/734 (29%), Positives = 349/734 (47%), Gaps = 119/734 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++++N +Q EA PLLI+AG GSGK +SP NILA+TFT
Sbjct: 5 VKNMNSEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ ++I
Sbjct: 64 AAKEMKARVEHLVGEE-AQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQK-SVI 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ V EN + KR M G ++ L
Sbjct: 122 KDVLKSEN---IDSKRFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP + +K + ++ A + + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PE + YQ+ ++ I VDE+QDT+ QY+L+++LA+ + +VGD DQSI+ + GADI
Sbjct: 203 PETLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ K I L +NYRST+ I+ AA+ +I+HN +R + K + T NS G KI E
Sbjct: 263 ILSFEEDYPEAKTIFLEQNYRSTKNILNAANEVIKHNSER-KPKGLWTANSGGDKIQYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++H +G Y +AILYR +V + F + IP+ +
Sbjct: 322 AMTERDEAEYVVKEIMKHQRSGK----KYSEMAILYRTNAQSRVLEETFMKSNIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR I ++KI T
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINV--------PKRGIGPSSVEKIQTYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + G K+ +TQ + + EMI L++ + + I+ + + V
Sbjct: 430 LQNNISMFDALAEVDFIGLSKK--VTQ--ECISFYEMIQNLIKEQEFLE--ISEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
QK G + +L+ + + S + L ++ +F+S E N +++
Sbjct: 484 QK-----------SGYRDMLDREQSIES--RSRLENLDEFMS---VPKDYEENTPLEEQS 527
Query: 821 CINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
IN L + + I E +T +N VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 528 LINFLTDLSLVADIDEADT----------QNGVTLMTMHSAKGLEFPIVFIMGMEESLFP 577
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
+ +E +EEERR+ YVA+TRA + L+I M+ Q PSRFLKEI
Sbjct: 578 HIRAIK---SEDDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKEI 634
Query: 936 PHHLREVQAEQSVQ 949
P L + Q Q
Sbjct: 635 PEDLLDSHTGQKRQ 648
>sp|Q5HN29|PCRA_STAEQ ATP-dependent DNA helicase PcrA OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=pcrA PE=3 SV=1
Length = 729
Score = 249 bits (636), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 217/734 (29%), Positives = 349/734 (47%), Gaps = 119/734 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++++N +Q EA PLLI+AG GSGK +SP NILA+TFT
Sbjct: 5 VKNMNSEQSEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM+ R+ +VG+ A+ + +STFHS +++ R A+++ F I Q+ ++I
Sbjct: 64 AAKEMKARVEHLVGEE-AQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQK-SVI 121
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ V EN + KR M G ++ L
Sbjct: 122 KDVLKSEN---IDSKRFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTP + +K + ++ A + + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PE + YQ+ ++ I VDE+QDT+ QY+L+++LA+ + +VGD DQSI+ + GADI
Sbjct: 203 PETLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ K I L +NYRST+ I+ AA+ +I+HN +R + K + T NS G KI E
Sbjct: 263 ILSFEEDYPEAKTIFLEQNYRSTKNILNAANEVIKHNSER-KPKGLWTANSGGDKIQYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + +++ +I++H +G Y +AILYR +V + F + IP+ +
Sbjct: 322 AMTERDEAEYVVKEIMKHQRSGK----KYSEMAILYRTNAQSRVLEETFMKSNIPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR I ++KI T
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINV--------PKRGIGPSSVEKIQTYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + G K+ +TQ + + EMI L++ + + I+ + + V
Sbjct: 430 LQNNISMFDALAEVDFIGLSKK--VTQ--ECISFYEMIQNLIKEQEFLE--ISEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKG 820
QK G + +L+ + + S + L ++ +F+S E N +++
Sbjct: 484 QK-----------SGYRDMLDREQSIES--RSRLENLDEFMS---VPKDYEENTPLEEQS 527
Query: 821 CINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIP 878
IN L + + I E +T +N VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 528 LINFLTDLSLVADIDEADT----------QNGVTLMTMHSAKGLEFPIVFIMGMEESLFP 577
Query: 879 LVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
+ +E +EEERR+ YVA+TRA + L+I M+ Q PSRFLKEI
Sbjct: 578 HIRAIK---SEDDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKEI 634
Query: 936 PHHLREVQAEQSVQ 949
P L + Q Q
Sbjct: 635 PEDLLDSHTGQKRQ 648
>sp|P0A5A3|UVRD1_MYCTU ATP-dependent DNA helicase UvrD1 OS=Mycobacterium tuberculosis
GN=uvrD1 PE=1 SV=1
Length = 771
Score = 243 bits (620), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 213/736 (28%), Positives = 340/736 (46%), Gaps = 103/736 (13%)
Query: 238 PDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNIL 282
P + L LN QQ +A + S PLLIVAG GSGK G+ IL
Sbjct: 13 PSPADQLLDGLNPQQRQAVVHEGS-PLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQIL 71
Query: 283 AMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGH 341
A+TFT AA+EMR+R+ +VG+ A+ + +STFHS +++ R+ A +E S F IY
Sbjct: 72 AITFTNKAAAEMRERVVGLVGE-KARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDA 130
Query: 342 GQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
RR + +++ + L +KR S +L A + N ++ + L
Sbjct: 131 DDSRRLL----QMVGRDLGLDIKRYSPRLLAN--------AISNLKNELIDPHQALAGLT 178
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
+ D D+A+A A++ + Y LR+ NALD+ DLI +V +
Sbjct: 179 E------DSDDLARAV---------------ASVYDEYQRRLRAANALDFDDLIGETVAV 217
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN--------RITIVGDDDQS 513
L FP++ Q Y+ ++ ++VDE+QDT+ QY L++ L + + +VGD DQS
Sbjct: 218 LQAFPQIAQYYRRRFRHVLVDEYQDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQS 277
Query: 514 IFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTD 573
I++F GA I + F +D+ + + I L +NYRST+ I+ AA+S+I N R + K + TD
Sbjct: 278 IYAFRGATIRNIEDFERDYPDTRTILLEQNYRSTQNILSAANSVIARNAGRRE-KRLWTD 336
Query: 574 NSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
G I+ NE + F+ ++I A S +Y +A+ YR S + +
Sbjct: 337 AGAGELIVGYVADNEHDEARFVAEEIDALAE---GSEITYNDVAVFYRTNNSSRSLEEVL 393
Query: 634 RERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID 692
IP+ + GV FY +K +R I+A LR D RR+ ++ + D
Sbjct: 394 IRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSLRRILNT-------PRRGIGD 446
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRR-EPSISA 751
+ + + D A G + + +EM +L R + +
Sbjct: 447 RAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAEKAIAGFVEMFDELRGRLDDDLGE 506
Query: 752 VITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEE 811
++ +V + LE D +L DN L L++ +F ST A
Sbjct: 507 LVEAVLERTGYRRELE----ASTDPQELARLDN-----LNELVSVAHEF-STDRENAAAL 556
Query: 812 GNVDQDKKGCINVLKAFIDYIS-----ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDI 866
G D+D VL F++ +S + EH VTL T+H +KGLE+ +
Sbjct: 557 GPDDEDVPDT-GVLADFLERVSLVADADEIPEH-------GAGVVTLMTLHTAKGLEFPV 608
Query: 867 VFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW--Q 924
VFV + P + + T + EERRL YV +TRAR++L++ ++ ++W
Sbjct: 609 VFVTGWEDGMFPHMRALDNP-----TELSEERRLAYVGITRARQRLYVSRAIVRSSWGQP 663
Query: 925 LLQP-SRFLKEIPHHL 939
+L P SRFL+EIP L
Sbjct: 664 MLNPESRFLREIPQEL 679
>sp|P0A5A4|UVRD1_MYCBO ATP-dependent DNA helicase UvrD1 OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=uvrD1 PE=3 SV=1
Length = 771
Score = 243 bits (620), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 213/736 (28%), Positives = 340/736 (46%), Gaps = 103/736 (13%)
Query: 238 PDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNIL 282
P + L LN QQ +A + S PLLIVAG GSGK G+ IL
Sbjct: 13 PSPADQLLDGLNPQQRQAVVHEGS-PLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQIL 71
Query: 283 AMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEFLIYGH 341
A+TFT AA+EMR+R+ +VG+ A+ + +STFHS +++ R+ A +E S F IY
Sbjct: 72 AITFTNKAAAEMRERVVGLVGE-KARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDA 130
Query: 342 GQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLC 401
RR + +++ + L +KR S +L A + N ++ + L
Sbjct: 131 DDSRRLL----QMVGRDLGLDIKRYSPRLLAN--------AISNLKNELIDPHQALAGLT 178
Query: 402 QYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKL 461
+ D D+A+A A++ + Y LR+ NALD+ DLI +V +
Sbjct: 179 E------DSDDLARAV---------------ASVYDEYQRRLRAANALDFDDLIGETVAV 217
Query: 462 LSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN--------RITIVGDDDQS 513
L FP++ Q Y+ ++ ++VDE+QDT+ QY L++ L + + +VGD DQS
Sbjct: 218 LQAFPQIAQYYRRRFRHVLVDEYQDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQS 277
Query: 514 IFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTD 573
I++F GA I + F +D+ + + I L +NYRST+ I+ AA+S+I N R + K + TD
Sbjct: 278 IYAFRGATIRNIEDFERDYPDTRTILLEQNYRSTQNILSAANSVIARNAGRRE-KRLWTD 336
Query: 574 NSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633
G I+ NE + F+ ++I A S +Y +A+ YR S + +
Sbjct: 337 AGAGELIVGYVADNEHDEARFVAEEIDALAE---GSEITYNDVAVFYRTNNSSRSLEEVL 393
Query: 634 RERKIPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID 692
IP+ + GV FY +K +R I+A LR D RR+ ++ + D
Sbjct: 394 IRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSLRRILNT-------PRRGIGD 446
Query: 693 HIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRR-EPSISA 751
+ + + D A G + + +EM +L R + +
Sbjct: 447 RAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAEKAIAGFVEMFDELRGRLDDDLGE 506
Query: 752 VITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEE 811
++ +V + LE D +L DN L L++ +F ST A
Sbjct: 507 LVEAVLERTGYRRELE----ASTDPQELARLDN-----LNELVSVAHEF-STDRENAAAL 556
Query: 812 GNVDQDKKGCINVLKAFIDYIS-----ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDI 866
G D+D VL F++ +S + EH VTL T+H +KGLE+ +
Sbjct: 557 GPDDEDVPDT-GVLADFLERVSLVADADEIPEH-------GAGVVTLMTLHTAKGLEFPV 608
Query: 867 VFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW--Q 924
VFV + P + + T + EERRL YV +TRAR++L++ ++ ++W
Sbjct: 609 VFVTGWEDGMFPHMRALDNP-----TELSEERRLAYVGITRARQRLYVSRAIVRSSWGQP 663
Query: 925 LLQP-SRFLKEIPHHL 939
+L P SRFL+EIP L
Sbjct: 664 MLNPESRFLREIPQEL 679
>sp|Q9CD72|UVRD1_MYCLE ATP-dependent DNA helicase UvrD1 OS=Mycobacterium leprae (strain
TN) GN=uvrD PE=3 SV=1
Length = 778
Score = 239 bits (610), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 220/768 (28%), Positives = 351/768 (45%), Gaps = 104/768 (13%)
Query: 234 TQNMPD-EYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GIS 277
T PD E + L LN QQ +A + S PLLIVAG GSGK +
Sbjct: 6 TDAKPDSEVDRLLDGLNPQQRQAVVHEGS-PLLIVAGAGSGKTTVLARRIAYLIAARSVG 64
Query: 278 PSNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER-TSEF 336
S ILA+TFT AA+EMR+R+ +VG T + +STFHS +++ R+ A + S F
Sbjct: 65 VSQILAITFTNKAAAEMRERVARLVGDHTGPSMWVSTFHSTCVRILRNQASLIGGLNSNF 124
Query: 337 LIYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMS 396
IY R + +++ + L +KR S + M NA+ S
Sbjct: 125 SIYDVDDSRSLL----QMIGQDMGLDIKRYSPRL---------------MANAI-----S 160
Query: 397 SFKLCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLIS 456
+ K N+ VA S T R + A + Y LR+ NALD+ DLI
Sbjct: 161 NLK----NELIDAESAVANLSSDTDDLARTV-----ATVYGEYQRRLRTANALDFDDLIG 211
Query: 457 CSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-----------RIT 505
+V +L FP++ + Y+ ++ ++VDE+QDT+ QY L++ L H +
Sbjct: 212 ETVGILQAFPQIAEHYRRRFRHVLVDEYQDTNHAQYVLVRELVGHGARNSPDDMPPGELC 271
Query: 506 IVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRC 565
+VGD DQSI++F G+ IS + F +D+ + I L +NYRST+ I+ AA+S+I N R
Sbjct: 272 VVGDADQSIYAFRGSTISNIEDFERDYPDTTTILLEQNYRSTQNILSAANSVIARNFGRR 331
Query: 566 QLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVS 625
K + TD G I+ NE + FI D+I G +Y +A+LYR
Sbjct: 332 D-KRLWTDAGKGELIVGYVSDNEHDEAKFIADEIDALVGGGE---ITYDDVAVLYRANNL 387
Query: 626 GKVFQTAFRERKIPFNI-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEK 684
+ + F IP+ + G FY K +R +IA LR D RR+
Sbjct: 388 SRSLEEVFIPTGIPYKVVGGFCFYESKEIRDLIAYLRVLDNPGDAVSMRRILNT------ 441
Query: 685 EEKKRVIDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKL-V 743
++ + D + ++ + ++ D A G + + + ++ L
Sbjct: 442 -PRRGIGDRAEACVSVYAENTGTSFADALQAVAEGKVPMLNTRSVKAIAGFVALLDDLRC 500
Query: 744 RREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST 803
R + + ++ SV + YL E + D +L DN L L++ +F +
Sbjct: 501 RVDDDLGELVESV--LERSGYLRELESSTDPQ--ELARLDN-----LNELVSFAHEFSTE 551
Query: 804 KFTAAKEEGNV----DQDKKGCINVLKAFIDYIS-ERETEHFRTQRHDNENSVTLTTIHQ 858
+ AA ++ D+D L AF++ +S +T+ +N VTL T+H
Sbjct: 552 QANAAALAKSLHTPEDEDVPDT-GALAAFLEKVSLMSDTDQI---PENNSGVVTLMTLHA 607
Query: 859 SKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVM 918
+KGLE+ +VFV + +P + T + EERRL YV +TRAR++L++ +
Sbjct: 608 AKGLEFPVVFVTGWEDGMLPHMRTLGDP-----TELSEERRLAYVGITRARQRLYLSRAI 662
Query: 919 MDANW--QLLQP-SRFLKEIPHHLREVQAEQSV-QDQHENIPEGTAQF 962
++W +L P SRFL+EIP L + +S+ D + G ++F
Sbjct: 663 TRSSWGQPILNPESRFLREIPPEL--IDWRRSILTDSYSTPASGASRF 708
>sp|Q89A21|REP_BUCBP ATP-dependent DNA helicase rep OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=rep PE=3 SV=1
Length = 670
Score = 221 bits (562), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 207/721 (28%), Positives = 328/721 (45%), Gaps = 118/721 (16%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAAS 292
N+ Q + A +S P LI+AG GSGK P I A+TFT AA
Sbjct: 3 FNEHQ-KKAISYISGPCLILAGAGSGKTRVIINKIVHLIKICHFDPKCITAITFTNKAAC 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM+ RI +++ + + ISTFH+ L++ +S E L S F I+ Q + E V
Sbjct: 62 EMKSRILNVLSVNVSNLVKISTFHALGLEIIKSEIELLNIKSNFTIFDEQDQISILQEIV 121
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFK---LC--QYNKFE 407
E V++I S+S++K LC Q NK
Sbjct: 122 ---SKEDRSFVRQIRQ-------------------------SISNWKNKLLCPNQVNKIS 153
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
++ FR E YN L+S N LD+ DLI LL
Sbjct: 154 NSSIEFK--------FFR---------YYELYNAYLKSSNILDFDDLIFLPTILLRDNKL 196
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFD 526
+ + D K ++VDE+QDT+ +QY L+++L+S + T+VGDDDQSI+S+ GA+I F+
Sbjct: 197 SRERWNDKIKYLLVDEYQDTNFIQYKLIKLLSSKRSNFTLVGDDDQSIYSWRGANIHNFE 256
Query: 527 SFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECH 586
S + D+ N + I + NYRS+ I++ A++LI +N+ K + ++ +GS + I
Sbjct: 257 SLKHDYPNLRTIIMQHNYRSSGRILKVANALISNNLHFFN-KKLFSNLDYGSIVEIISAK 315
Query: 587 NEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGV 645
NE+ + I+ ++ H SN A Y AILYR K+F+ + KIP+ I +
Sbjct: 316 NEEDEARVILQTLMLHKSNYNA---QYKDYAILYRSNYQVKIFEKFLIKFKIPYKILANI 372
Query: 646 AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSF 705
+F+ + ++ +IA LR + D+ + RV L + + + + S R SF
Sbjct: 373 SFFSRPEIKDLIAYLRLIINPDDNAAFLRVVNRPL---RGIGAVTLQKLKEWSKKRNQSF 429
Query: 706 ISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYL 765
A+ DI + L ++ + ++ IS ++ P I + VA + +K+L
Sbjct: 430 FMASLDI---GLESILPVHNLKSLQEFVYLIQTISYQIQLNP-IEVLEKLVATIKYEKWL 485
Query: 766 LEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVL 825
+ + N L ++ L + + S KF V+
Sbjct: 486 MRSLKFSKLYVASIKNISIVLNWIINELKYKIMN--SKKF------------------VM 525
Query: 826 KAFIDYISERETEHFRTQRHDNE------NSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
K ID ISE F Q NE + V L T+H SKGLE+ VF+ E +P
Sbjct: 526 KYLIDIISE-----FILQNSLNEDIVINNDYVQLMTLHASKGLEFLYVFIVGVEEGVLPY 580
Query: 880 VHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLL---QPSRFLKEIP 936
+ E +++EERRL YV +TRA+KKLF+ Y + + ++ +PSRFL+E+P
Sbjct: 581 ---YRNTTME--NNIDEERRLAYVGITRAQKKLFLSYAIQRCQYGVVINTKPSRFLRELP 635
Query: 937 H 937
Sbjct: 636 Q 636
>sp|P56255|PCRA_GEOSE ATP-dependent DNA helicase PcrA OS=Geobacillus stearothermophilus
GN=pcrA PE=1 SV=1
Length = 724
Score = 218 bits (555), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 215/730 (29%), Positives = 334/730 (45%), Gaps = 124/730 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
L LN +Q EA PLLI+AG GSGK ++P NILA+TFT
Sbjct: 9 LAHLNKEQQEA-VRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNK 67
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EMR+R+ S++G A A+++ ISTFHS +++ R +++ F I Q +
Sbjct: 68 AAREMRERVQSLLGGA-AEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQ----L 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
++ + EK + K+ R L ++A
Sbjct: 123 SVMKTILKEKNIDPKKFEP------------RTILGTISA-------------------- 150
Query: 410 GMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
AK P +F K +++ + + + Y L ++LD+ DLI +++L
Sbjct: 151 ----AKNELLPPEQFAKRASTYYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRV 206
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
P+V YQ ++ I +DE+QDT+ QY+L++ LA I VGD DQSI+ + GADI
Sbjct: 207 PDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQNICAVGDADQSIYRWRGADIQN 266
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF +D+ N K I L +NYRST+ I++AA+ +I+HNV R + K + T+N G I+ E
Sbjct: 267 ILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNR-KPKRIWTENPEGKPILYYE 325
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-H 643
NE + F+ +I E G Y A+LYR +V + + IP+ I
Sbjct: 326 AMNEADEAQFVAGRIREAVERGER---RYRDFAVLYRTNAQSRVMEEMLLKANIPYQIVG 382
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKC 703
G+ FY +K ++ I+A LR DD R+ + ++ ID + + + +
Sbjct: 383 GLKFYDRKEIKDILAYLRVIANPDDDLSLLRIIN---VPKRGIGASTIDKLVRYAADHEL 439
Query: 704 SFISAACDI------FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVA 757
S A ++ A + RSQL Q T +
Sbjct: 440 SLFEALGELEMIGLGAKAAGALAAFRSQLEQW------------------------TQLQ 475
Query: 758 NMVPQKYLLEQRAVVDFDGGK-LLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQ 816
V L+E+ V+D G + +L + + + Q L ++ +FLS K NV
Sbjct: 476 EYVSVTELVEE--VLDKSGYREMLKAERTIEA--QSRLENLDEFLSV----TKHFENVSD 527
Query: 817 DKKGCINVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANE 874
D K I L A I + E + T++ ++V L T+H +KGLE+ +VF+ E
Sbjct: 528 D-KSLIAFLTDLALISDLDELDG----TEQAAEGDAVMLMTLHAAKGLEFPVVFLIGMEE 582
Query: 875 TEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD---ANWQLLQPSRF 931
P N ++ + +EEERRL YV +TRA ++L + M N Q+ PSRF
Sbjct: 583 GIFP----HNRSLEDD-DEMEEERRLAYVGITRAEEELVLTSAQMRTLFGNIQMDPPSRF 637
Query: 932 LKEIPHHLRE 941
L EIP HL E
Sbjct: 638 LNEIPAHLLE 647
>sp|Q9S3Q0|PCRA_LEUCI ATP-dependent DNA helicase PcrA OS=Leuconostoc citreum GN=pcrA PE=3
SV=1
Length = 749
Score = 217 bits (552), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 199/736 (27%), Positives = 331/736 (44%), Gaps = 135/736 (18%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAA 291
+N++Q EA PLLI+AG GSGK + P ILA+TFT AA
Sbjct: 9 GMNNKQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAHLVQDLNVFPWRILAITFTNKAA 67
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEA 351
EMR+RI +++ + A+++ +STFH+ ++++ R E + F I QR
Sbjct: 68 REMRERIAALLSEDVARDIWVSTFHALAVRILRRDGEAIGLAKNFTIIDTSAQRT----- 122
Query: 352 VRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
++KR+ D+ + QY+ GM
Sbjct: 123 ----------LMKRVINDL--------------------------NLDTNQYDPRTILGM 146
Query: 412 -DVAKASGKTPAEFRKIGD----EIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
AK P ++ K D E A + Y L+ ++D+ DLI ++ L + P
Sbjct: 147 ISNAKNDMLQPRDYAKAADNAFQETVAEVYTAYQAELKRSQSVDFDDLIMLTIDLFQSAP 206
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGF 525
+V YQ ++ + VDE+QDT+ QY+++ +LA ++ + +VGD DQSI+ + GA+++
Sbjct: 207 DVLARYQQQFEYLHVDEYQDTNDAQYTIVNLLAQRSKNLAVVGDADQSIYGWRGANMNNI 266
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
+F KD+ N + L +NYRST+ I++AA+++I HN +R K + T+N G +I
Sbjct: 267 LNFEKDYPNAHTVMLEQNYRSTQNILDAANAVINHNNERVP-KKLWTENGKGDQITYYRA 325
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHG 644
E + FI+ I + +Y A+LYR + + + + +P++ + G
Sbjct: 326 QTEHDEANFILSNIQQLRE---TKHMAYSDFAVLYRTNAQSRNIEESLVKANMPYSMVGG 382
Query: 645 VAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCS 704
FY +K + I+A + D+ + RV E KR + +++ +
Sbjct: 383 HKFYERKEILDIMAYMSLITNPDDNAAFERVVN--------EPKRGL----GATSLTRLR 430
Query: 705 FISAACDIFGAKISGTFK--RSQLTQGRKVLLTL-EMISKLVRREPSISAVITSVANMVP 761
++ ++ K G+ + S T+ LT EM+ L R+ S +T + +V
Sbjct: 431 ELANRLNVSYMKAIGSIELAPSITTKAASKFLTFAEMMHNL--RQQSEFLNVTELTELVM 488
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLST------KFTAAKEEGNVD 815
+ Q +L E ND S Q L ++ +FLS K+ E ++D
Sbjct: 489 TQSGYRQ----------MLAEKNDPDS--QARLENLEEFLSVTKEFDDKYQPEDPE-SID 535
Query: 816 --QDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
D G ++ D+ + + +VTL T+H +KGLE+ +VF+
Sbjct: 536 PVTDFLGTTALMSDLDDF-------------EEGDGAVTLMTLHAAKGLEFPVVFLIGLK 582
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLF-------ILYVMMDANWQLL 926
E PL ++E +EEERRL YV +TRA KKLF +LY AN
Sbjct: 583 EGIFPLSR---AMMDED--LLEEERRLAYVGITRAMKKLFLTNAFSRLLYGRTQAN---- 633
Query: 927 QPSRFLKEIPHHLREV 942
+PSRF+ EI L E
Sbjct: 634 EPSRFIAEISPELLET 649
>sp|O34580|PCRA_BACSU ATP-dependent DNA helicase PcrA OS=Bacillus subtilis (strain 168)
GN=pcrA PE=1 SV=1
Length = 739
Score = 213 bits (543), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 209/732 (28%), Positives = 330/732 (45%), Gaps = 121/732 (16%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTF 286
++ L LN Q EA PLL++AG GSGK ++P NILA+TF
Sbjct: 6 NQLLSGLNPVQQEA-VKTTDGPLLLMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITF 64
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR 346
T AA EM++R+ SI+G A ++ ISTFHS +++ R +++ F I Q
Sbjct: 65 TNKAAREMKERVESILGPG-ADDIWISTFHSMCVRILRRDIDRIGINRNFSILDTADQ-- 121
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
+ ++ + E+ L K+ R+ L +++
Sbjct: 122 --LSVIKGILKERNLDPKKFDP------------RSILGTISS----------------- 150
Query: 407 ERDGMDVAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLL 462
AK P EF K+ D++ + + +Y L +LD+ DLI ++KL
Sbjct: 151 -------AKNELTEPEEFSKVAGGYYDQVVSDVYADYQKKLLKNQSLDFDDLIMTTIKLF 203
Query: 463 STFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGAD 521
PEV + YQ ++ I VDE+QDT+ QY L++ LA + +VGD DQSI+ + GAD
Sbjct: 204 DRVPEVLEFYQRKFQYIHVDEYQDTNRAQYMLVKQLAERFQNLCVVGDSDQSIYRWRGAD 263
Query: 522 ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII 581
I+ SF KD+ N I L +NYRST+ I+ AA+ +I++N R + KN+ T+N G KI
Sbjct: 264 ITNILSFEKDYPNASVILLEQNYRSTKRILRAANEVIKNNSNR-KPKNLWTENDEGIKIS 322
Query: 582 IKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN 641
NE + F+ KI + S G + IAILYR +V + + + +N
Sbjct: 323 YYRGDNEFGEGQFVAGKIHQLHSTGKRKLSD---IAILYRTNAQSRVIEETLLKAGLNYN 379
Query: 642 I-HGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFK------AFLLLEKEEKKRVIDHI 694
I G FY +K ++ I+A LR DD + R+ LEK I+ +
Sbjct: 380 IVGGTKFYDRKEIKDILAYLRLVSNPDDDISFTRIVNVPKRGVGATSLEKIASYAAINGL 439
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVIT 754
I++ FI + A +F+ +MI L + +S IT
Sbjct: 440 SFFQAIQQVDFIGVSAK--AANALDSFR--------------QMIENLTNMQDYLS--IT 481
Query: 755 SVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNV 814
+ + K E R ++L + + + Q L ++ +FLS T E+ +
Sbjct: 482 ELTEEILDK--TEYR--------EMLKAEKSIEA--QSRLENIDEFLSV--TKNFEQKSE 527
Query: 815 DQDKKGCIN--VLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKA 872
D+ + L A ID + ++E E ++++TL T+H +KGLE+ +VF+
Sbjct: 528 DKTLVAFLTDLALIADIDQLDQKEEES------GGKDAITLMTLHAAKGLEFPVVFLMGL 581
Query: 873 NETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMD---ANWQLLQPS 929
E P +EEERRL YV +TRA ++L++ M + S
Sbjct: 582 EEGVFPHSRSLMEE-----AEMEEERRLAYVGITRAEQELYLTNAKMRTLFGRTNMNPES 636
Query: 930 RFLKEIPHHLRE 941
RF+ EIP L E
Sbjct: 637 RFIAEIPDDLLE 648
>sp|P03018|UVRD_ECOLI DNA helicase II OS=Escherichia coli (strain K12) GN=uvrD PE=1 SV=1
Length = 720
Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 193/719 (26%), Positives = 323/719 (44%), Gaps = 109/719 (15%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTF 286
S L SLND+Q EA S LL++AG GSGK SP +I+A+TF
Sbjct: 4 SYLLDSLNDKQREAVAAPRSN-LLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTF 62
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR 346
T AA+EMR RIG ++G + + + TFH + +L R+H +F I
Sbjct: 63 TNKAAAEMRHRIGQLMGTSQGG-MWVGTFHGLAHRLLRAHHMDANLPQDFQI-------- 113
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
L +++ ++KR+ M + + R +++ +N+
Sbjct: 114 -------LDSEDQLRLLKRLIKAMNLDEKQWP-PRQAMWYINSQ---------------- 149
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCN---ALDYHDLISCSVKLLS 463
K G P + G+ + + Y +C+ +D+ +L+ + +L
Sbjct: 150 --------KDEGLRPHHIQSYGNPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWL 201
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADI 522
P + Q Y++ + I+VDEFQDT+ +QY+ +++LA ++ IVGDDDQSI+ + GA +
Sbjct: 202 NKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMIVGDDDQSIYGWRGAQV 261
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
F DF + IRL +NYRST I+ AA++LI++N R K + TD + G I +
Sbjct: 262 ENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENNNGRLG-KKLWTDGADGEPISL 320
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI 642
NE + F++++I NG A AILYR +V + A + +P+ I
Sbjct: 321 YCAFNELDEARFVVNRIKTWQDNGGA----LAECAILYRSNAQSRVLEEALLQASMPYRI 376
Query: 643 H-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
+ G+ F+ ++ ++ ++ LR DD + RV + R +D + + S R
Sbjct: 377 YGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNT---PTRGIGDRTLDVVRQTSRDR 433
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ + A ++ K L S L R I A+ A+M
Sbjct: 434 QLTLWQACRELLQEKA----------------LAGRAASALQRFMELIDALAQETADMP- 476
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLS-TKFTAAKEEGNVDQDKKG 820
L Q V D G + + Q + ++ + ++ T+ + EE D+D
Sbjct: 477 ---LHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYNEE---DED--- 527
Query: 821 CINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLV 880
+ L+AF+ + + E Q +++V L T+H +KGLE+ VF+ E P
Sbjct: 528 -LMPLQAFLSHAA---LEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQ 583
Query: 881 HEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
+ +G +EEERRL YV +TRA +KL + Y + +PSRF+ E+P
Sbjct: 584 MSLD-----EGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELP 637
>sp|Q05311|UVRD_SALTY DNA helicase II OS=Salmonella typhimurium (strain LT2 / SGSC1412 /
ATCC 700720) GN=uvrD PE=3 SV=2
Length = 720
Score = 209 bits (532), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 189/722 (26%), Positives = 322/722 (44%), Gaps = 115/722 (15%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTF 286
S L SLND+Q EA S +L++AG GSGK SP +I+A+TF
Sbjct: 4 SYLLDSLNDKQREAVAAPRSN-MLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVTF 62
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR 346
T AA+EMR RIG ++G + + + TFH + +L R+H +F I
Sbjct: 63 TNKAAAEMRHRIGQLMGTSQGG-MWVGTFHGLAHRLLRAHHMDANLPQDFQI-------- 113
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
L +++ ++KR+ M + + R +++ +N+
Sbjct: 114 -------LDSEDQMRLLKRLIKAMNLDEKQWP-PRQAMWYINSQ---------------- 149
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCN---ALDYHDLISCSVKLLS 463
K G P + G+ + + Y +C+ +D+ +L+ + +L
Sbjct: 150 --------KDEGLRPHHIQSYGNPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWL 201
Query: 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADI 522
P + Q Y++ + I+VDEFQDT+ +QY+ +++LA ++ IVGDDDQSI+ + GA +
Sbjct: 202 NKPHILQHYRERFTNILVDEFQDTNNIQYAWVRLLAGDTGKVMIVGDDDQSIYGWRGAQV 261
Query: 523 SGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII 582
F DF + IRL +NYRST I+ AA++LI++N R K + TD G I +
Sbjct: 262 ENIQRFLNDFPGAQTIRLEQNYRSTSNILSAANALIENNNGRLG-KKLWTDGVDGEPISL 320
Query: 583 KECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI 642
NE + F++++I NG A AILYR +V + A + +P+ I
Sbjct: 321 YCAFNELDEARFVVNRIKTWQDNGGA----LAQCAILYRSNAQSRVLEEALLQASMPYRI 376
Query: 643 H-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIR 701
+ G+ F+ ++ ++ ++ LR DD + RV + R +D + + S R
Sbjct: 377 YGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNT---PTRGIGDRTLDVVRQTSRDR 433
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ + ++ K L S L R I A+ A+M
Sbjct: 434 QLTLWQVCRELLQEKA----------------LAGRAASALQRFMELIDALAQETADM-- 475
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADV----TDFLSTKFTAAKEEGNVDQD 817
++ R + +D+ LR++ + + + L TA ++ D+D
Sbjct: 476 PLHVQTDRVI----------KDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYNDED 525
Query: 818 KKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEI 877
+ + L+AF+ + + E Q +++V L T+H +KGLE+ VF+ E
Sbjct: 526 ED--LMPLQAFLSHAA---LEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580
Query: 878 PLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKE 934
P + +G +EEERRL YV +TRA +KL + Y + +PSRF+ E
Sbjct: 581 PSQMSLD-----EGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGE 635
Query: 935 IP 936
+P
Sbjct: 636 LP 637
>sp|O51889|REP_BUCAP ATP-dependent DNA helicase rep OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=rep PE=3 SV=1
Length = 658
Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 192/721 (26%), Positives = 338/721 (46%), Gaps = 99/721 (13%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAA 291
SLN Q + A ++ P LI+AG GSGK P NI+A+TFT AA
Sbjct: 2 SLNFNQ-KNAIELINGPCLILAGAGSGKTKVIINKIIYLINNCQYKPGNIIAVTFTNKAA 60
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEA 351
E++ R+ + K++ ISTFHS L++ + L+ S F ++
Sbjct: 61 HEIKVRLAKHLNLLQIKKMIISTFHSLGLEIIKKEINTLKFNSNFSLFD----------- 109
Query: 352 VRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
E ++++++K+I + + D ++ +FM+ S +K NKF
Sbjct: 110 ----ERDQMMLLKKICSKSIKNDTKL--LKKLVFMI--------SFWK----NKFLTPLQ 151
Query: 412 DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQE 471
A +F A + Y LR N LD+ DLI LL +
Sbjct: 152 VQLSAQSNLEKDF--------AFFYKQYTFHLRKSNILDFDDLICIPTSLLKNNQIIQNR 203
Query: 472 YQDSWKAIIVDEFQDTSAMQYSLLQILASHN-RITIVGDDDQSIFSFNGADISGFDSFRK 530
+Q ++VDE+QDT+ QY L+++L + N T+VGDDDQSI+S+ GA +K
Sbjct: 204 WQKKISYLLVDEYQDTNNSQYELIKMLTNVNSNFTLVGDDDQSIYSWRGAKPQNLFLIKK 263
Query: 531 DFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDA 590
DF N K I++ +NYRS I++AA+ LI +N+ + K + ++ +G+KI + NE
Sbjct: 264 DFPNLKIIKMEQNYRSYGRILKAANKLISNNLHYFK-KKLFSNLEYGNKIKVIIGKNEKN 322
Query: 591 QCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYR 649
+ I DKI+ SN I Y AILYR ++ + F ++ IP++I +F+
Sbjct: 323 EAEKIADKIIHECSN---DIMQYKDYAILYRGNYQSQILEKTFLKKNIPYDISTNSSFFS 379
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAA 709
+ ++ +++ LR + D+ + R+ + ++ ++ ++++++ + S +
Sbjct: 380 RPEIKDLLSYLRLIVNPDDNHAFIRILN---IPHRQIGLTTLNKLEELASKKNKSLFQIS 436
Query: 710 CDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQR 769
DI +I + + + + + ++ I KL + I ++ + N + + L
Sbjct: 437 NDI---EIKKILRERTVKKIKDFIYWIKKIIKLSLLKEDI--ILDKIINDIKYELWL--- 488
Query: 770 AVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFI 829
K+L E +++ + + ++++L GN + + ++K
Sbjct: 489 -------TKILKEPKKIKTSINNIYT-LSNWLKEML-----RGNEFEKPMNLLQIVKK-- 533
Query: 830 DYISERETEHFRTQRHD-NENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVN 888
++ R+ + Q ++ +N V L T+H SKGLE+ VF+ NE +P + N
Sbjct: 534 --MTLRDILEKKIQINEIPKNRVQLMTLHSSKGLEFSSVFIIGMNEGILPNIKSIN---- 587
Query: 889 EKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW-QLLQ--PSRFLKEIPHHLREVQAE 945
++EEERRL YV MTRARK+LF Y + Q L PSRFL E+P ++Q E
Sbjct: 588 --NDNIEEERRLTYVGMTRARKELFFTYCQTRIQYGQKLYTAPSRFLFELPQE--DLQWE 643
Query: 946 Q 946
+
Sbjct: 644 K 644
>sp|Q68WT1|UVRD_RICTY DNA helicase II OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=uvrD PE=3 SV=1
Length = 658
Score = 207 bits (528), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 206/726 (28%), Positives = 331/726 (45%), Gaps = 129/726 (17%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTT 288
++ +LN +Q +AA PLL++AG G+GK P NILA+TFT
Sbjct: 10 FMHTLNSEQKKAAL-HTEGPLLLLAGAGTGKTKVLTSRIANIIQQNLALPHNILAVTFTN 68
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER--TSEFLIYGHGQQRR 346
AA EM +R+ +++ + I TFHS + ++ R E L ++F I H Q
Sbjct: 69 KAAKEMSERVHNLI---NCYGVNIGTFHSMAAKILRDQIENLNLGLNNKFTIISHDDQLT 125
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
+ + V+L K I T T ++ +S +K
Sbjct: 126 LVKDIVKL--------KKDIDTKKYTP---------------KLIHIIISRWK------- 155
Query: 407 ERDGMDVAKASGK-TPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
G+ +K S T +++ I E Y L N LD+ DL+ + +L
Sbjct: 156 -DQGLLPSKLSASDTNLPLQRVA----KLIYEEYQKNLLISNVLDFGDLLLYNNELFIKN 210
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISG 524
PE+ + YQ+ ++ I++DE+QDT+ QY ++LAS R I VGDDDQSI+ + GA++
Sbjct: 211 PEILKYYQEKYRYILIDEYQDTNIAQYLWARMLASLYRNICCVGDDDQSIYGWRGAEVGN 270
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
F KDF I+L +NYRST I+ AAS++I +N R K + TD++ G KI I
Sbjct: 271 ILRFEKDFAGATIIKLEQNYRSTLPILAAASNVINNNKNRHS-KTLWTDSASGEKIKIIS 329
Query: 585 CHNEDAQCAFI---IDKILE----HASNGPASICSYGSIAILYRRQVSGKVFQTAFRERK 637
C ++ + +I IDK++ HA G+IAIL R + F+ AF
Sbjct: 330 CLSDKEEARYIACEIDKLVREERYHA----------GNIAILVRAGFQTRSFEEAFINSA 379
Query: 638 IPFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID--HI 694
+P+ I G+ FY + +R ++A +R +L D+ R+ KR I +
Sbjct: 380 MPYKIIGGLRFYERMEIRDVLAYIRISLNQNDNLALERIINV--------PKRAIGAASL 431
Query: 695 DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLE-MISKLVRREPSISAVI 753
+KI + IS I +G FK + +L ++ K + P I+ V
Sbjct: 432 NKIRSYALERNISNFVAIKEILETGIFKAKSYESLKDLLTKIDNWYEKFITDTP-INVVK 490
Query: 754 TSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGN 813
T + + L E++ F G++ N + LR++ ++ D+ DF+ + ++ E
Sbjct: 491 TILDDSGYLSMLQEEKTEEAF--GRIENINEMLRAIAEF--NDIHDFI--EHSSLVMENE 544
Query: 814 VDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKAN 873
V + G SVT+ T+H +KGLE+D+VF+
Sbjct: 545 VLETNYG----------------------------GSVTIMTLHAAKGLEFDVVFLPGWE 576
Query: 874 ETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV-MMDANWQLLQ--PSR 930
E P + EKG +EEERR+ YV +TRA+K L+I + ++++ PSR
Sbjct: 577 EGVFPSQRSLDED-GEKG--LEEERRIAYVGITRAKKDLYITHAESRKIFYEIVHSCPSR 633
Query: 931 FLKEIP 936
F+ EIP
Sbjct: 634 FINEIP 639
>sp|Q1RIP8|UVRD_RICBR Probable DNA helicase II homolog OS=Rickettsia bellii (strain
RML369-C) GN=uvrD PE=3 SV=1
Length = 653
Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 202/735 (27%), Positives = 330/735 (44%), Gaps = 130/735 (17%)
Query: 237 MPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNI 281
MP+ +L SLN+QQ + A PLL++AG G+GK SP NI
Sbjct: 1 MPNH--DFLHSLNEQQ-QKAVLHTEGPLLLLAGAGTGKTKVLTSRIANIIHQNLASPQNI 57
Query: 282 LAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER--TSEFLIY 339
LA+TFT AA EM++R+ ++V ++ L I TFHS + ++ R E L S F I
Sbjct: 58 LAVTFTNKAAKEMQERVHNLV---SSYGLNIGTFHSMAARILRDQIEHLNLGLNSRFTII 114
Query: 340 GHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFK 399
Q R I + V+L K + K+ + ++ ++ S + +L +SS
Sbjct: 115 SQDDQLRLIKDIVKL----KNIDTKKYAPKLI-------HIVISRWKDQGLLPNKLSS-- 161
Query: 400 LCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSV 459
+ P + + + E Y L N +D+ DL+ +
Sbjct: 162 ----------------SDTNLPLQ------RVAKLVYEEYQQNLLISNVVDFGDLLLYNN 199
Query: 460 KLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFN 518
+L P++ + YQ+ ++ I++DE+QDT+ +QY ++LAS ++ I VGDDDQSI+ +
Sbjct: 200 ELFIKNPDILKHYQERYRYILIDEYQDTNVVQYLWARMLASLSKNICCVGDDDQSIYGWR 259
Query: 519 GADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGS 578
GA++ F KDFLN I+L +NYRST I+ AAS++I +N R K + TD G
Sbjct: 260 GAEVGNILRFEKDFLNATIIKLEQNYRSTLPILAAASNVINNNKNR-HGKTLWTDKESGE 318
Query: 579 KIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKI 638
KI I C N+ + +I +I G S G+IAIL R + F+ AF +
Sbjct: 319 KIKIISCWNDKEEARYIAAEIARLVREGR---YSAGNIAILVRAGFQTRSFEEAFINSAM 375
Query: 639 PFN-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKI 697
P+ I G+ FY + +R ++A +R L D+ R+ KR I +
Sbjct: 376 PYKIIGGLRFYERMEIRDVLAYIRIALNQNDNLALERIINV--------PKRAIGAV--- 424
Query: 698 STIRKCSFISAACDI--FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRR------EPSI 749
T+ K + +I F A + L G + E + LV + S
Sbjct: 425 -TLNKIKLYAIEKNISNFAA------IKEMLEDGEIKTKSYETLKDLVTKISNWHERFSF 477
Query: 750 SAVITSVANMVPQKYLLE--QRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTA 807
A I ++ LE Q + G++ N + LR++ ++ D+ DF+ +
Sbjct: 478 DAPINVTKAILDDSGYLEMLQEEKTEEALGRIENINEMLRAIAEF--NDIHDFIEHS-SL 534
Query: 808 AKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIV 867
E +++ G + ++ T+H +KGLE+D+V
Sbjct: 535 VMENESLETSYGGSVTIM-----------------------------TLHGAKGLEFDVV 565
Query: 868 FVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV-MMDANWQLL 926
F+ E P + +EEERR+ YV +TRA+K+L+I + ++++
Sbjct: 566 FLPGWEEGVFPSQRSLDEE---GEKGLEEERRIAYVGITRAKKELYITHAESRKIFYEIV 622
Query: 927 Q--PSRFLKEIPHHL 939
+ PSRFL EIP +
Sbjct: 623 RSYPSRFLAEIPEEI 637
>sp|Q9ZD95|UVRD_RICPR Probable DNA helicase II homolog OS=Rickettsia prowazekii (strain
Madrid E) GN=uvrD PE=3 SV=1
Length = 658
Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 200/726 (27%), Positives = 333/726 (45%), Gaps = 123/726 (16%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTT 288
++ +LN +Q +AA PLL++AG G+GK P NILA+TFT
Sbjct: 10 FMHTLNAEQKKAAL-HTEGPLLLLAGAGTGKTKVLTSRIANIIHQNLALPHNILAVTFTN 68
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER--TSEFLIYGHGQQRR 346
AA EM +R+ +++ L I TFHS + ++ R E L + F I H Q
Sbjct: 69 KAAKEMSERVHNLI---NCYGLNIGTFHSMAAKILRDQIENLNLGFNNRFTIISHDDQLT 125
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
+ + V+L +K + K+ + ++ ++ S + +L +S+
Sbjct: 126 LVKDIVKL---KKDIDAKKYTPKLI-------HIIISRWKDQGLLPNKLST--------- 166
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
+ P + +I + E Y L N LD+ DL+ + +L P
Sbjct: 167 ---------SDTNLPLQ------KIAKLVYEEYQKNLLISNVLDFGDLLLYNNELFIKNP 211
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGF 525
V + YQ+ ++ I++DE+QDT+ QY ++LAS R I VGDDDQSI+ + GA++
Sbjct: 212 AVLKYYQEKYRYILIDEYQDTNIAQYLWARMLASLYRNICCVGDDDQSIYGWRGAEVGNI 271
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
F KDF I+L +NYRST I+ AAS++I +N R K + TD+S G KI I C
Sbjct: 272 LRFEKDFAGATIIKLEQNYRSTLPILAAASNVINNNKNRHS-KTLWTDSSSGEKIKIISC 330
Query: 586 HNEDAQCAFI---IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN- 641
++ + +I IDK+++ G+IAIL R + F+ AF IP+
Sbjct: 331 LSDKEEARYIACEIDKLVKEERYNA------GNIAILVRAGFQTRSFEEAFINSAIPYKI 384
Query: 642 IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID--HIDKIST 699
I G+ FY + +R ++A +R +L D+ R+ KR I ++KI +
Sbjct: 385 IGGLRFYERMEIRDVLAYIRISLNQNDNLALERIINV--------PKRAIGAASLNKIRS 436
Query: 700 I---RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSV 756
R S +A +I G K + +L ++ + + I+ V +
Sbjct: 437 YALERNISNFAAIKEILEI---GNIKAKSYESLKDLLTKIDNWYEQFIIDTPINVVKAIL 493
Query: 757 ANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQ 816
+ L E++ F G++ N + LR++ ++ D+ DF+ ++++ E V +
Sbjct: 494 DDSGYLAMLKEEKTEEAF--GRIENINEMLRAIAEF--NDIHDFI--EYSSLVMENEVLE 547
Query: 817 DKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETE 876
G SVT+ T+H +KGLE+D+VF+ E
Sbjct: 548 TNYG----------------------------GSVTIMTLHAAKGLEFDVVFLPGWEEGV 579
Query: 877 IPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV-MMDANWQLLQ--PSRFLK 933
P + EKG +EEERR+ YV +TRA+K L+I + +++++ PSRF+
Sbjct: 580 FPSQRSLDED-GEKG--LEEERRIAYVGITRAKKDLYITHAESRKIFYEIVRSCPSRFIN 636
Query: 934 EIPHHL 939
EIP +
Sbjct: 637 EIPDEI 642
>sp|Q9L6S1|REP_SALTY ATP-dependent DNA helicase rep OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=rep PE=3 SV=1
Length = 674
Score = 204 bits (520), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 196/727 (26%), Positives = 337/727 (46%), Gaps = 104/727 (14%)
Query: 260 MSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAASEMRDRIGSIVGK 304
++ P L++AG GSGK G +I A+TFT AA EM++R+G +G+
Sbjct: 14 VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGR 73
Query: 305 ATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVR-LLENEKILVV 363
A+ L ISTFH+ L + + L S F ++ Q + E L+E++K+L+
Sbjct: 74 KEARGLMISTFHTLGLDIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIEDDKVLLQ 133
Query: 364 KRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDVAKASGKTPAE 423
+ IST +S++K N + A A G+
Sbjct: 134 QLIST--------------------------ISNWK----NDLKTPAQAAAGAKGER--- 160
Query: 424 FRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDE 483
D I A Y+ +++CN LD+ DLI LL EV + +Q+ + ++VDE
Sbjct: 161 -----DRIFAHCYGLYDAHMKACNVLDFDDLILLPTLLLQRNDEVRERWQNKIRYLLVDE 215
Query: 484 FQDTSAMQYSLLQILASHN-RITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTR 542
+QDT+ QY L+++L R T+VGDDDQSI+S+ GA +DF + I+L +
Sbjct: 216 YQDTNTSQYELVKLLVGQRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPALQVIKLEQ 275
Query: 543 NYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEH 602
NYRS+ I++AA+ LI +N + K + ++ +G+++ + +NE+ + + +++ H
Sbjct: 276 NYRSSGRILKAANILIANNPHVFE-KRLFSELGYGAELKVLSANNEEHEAERVTGELIAH 334
Query: 603 ASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRKKVVRAIIAMLR 661
+ Y AILYR +VF+ + +IP+ I G +F+ + ++ ++A LR
Sbjct: 335 HF---VNKTQYKDYAILYRGNHQSRVFEKFLMQNRIPYKISGGTSFFSRPEIKDLLAYLR 391
Query: 662 TTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDI-FGAKISGT 720
DD + R+ ++E + + + + R S +A+ D+ K++G
Sbjct: 392 VLTNPDDDSAFLRIVNT---PKREIGPATLQKLGEWAMTRNKSLFTASFDMGLSQKLTGR 448
Query: 721 FKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLL 780
S LT + L I +L REP ++AV + + + +L E ++
Sbjct: 449 GYDS-LT---RFTHWLGEIQRLAEREP-VAAVRDLIHGIDYESWLYETSPSPKAAEMRMK 503
Query: 781 NEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFI--DYISERETE 838
N + L + +T+ L EGN + V+ F D + E+E
Sbjct: 504 N--------VNQLFSWMTEML---------EGNELDEPMTLTQVVTRFTLRDMMERGESE 546
Query: 839 HFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEER 898
+ + V L T+H SKGLE+ V++ E +P +++E ++EEER
Sbjct: 547 -------EELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP----HQSSIDED--NIEEER 593
Query: 899 RLLYVAMTRARKKL-FILYVMMDANWQLL--QPSRFLKEIPHHLREVQAEQSVQDQHENI 955
RL YV +TRA+K+L F L +L+ +PSRFL E+P + E+ V E +
Sbjct: 594 RLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEERM 653
Query: 956 PEGTAQF 962
+G +
Sbjct: 654 QKGQSHL 660
>sp|P09980|REP_ECOLI ATP-dependent DNA helicase rep OS=Escherichia coli (strain K12)
GN=rep PE=1 SV=3
Length = 673
Score = 204 bits (520), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 196/726 (26%), Positives = 336/726 (46%), Gaps = 102/726 (14%)
Query: 260 MSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAASEMRDRIGSIVGK 304
++ P L++AG GSGK G +I A+TFT AA EM++R+G +G+
Sbjct: 14 VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGR 73
Query: 305 ATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVR-LLENEKILVV 363
A+ L ISTFH+ L + + L + F ++ Q + E L+E++K+L+
Sbjct: 74 KEARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIEDDKVLLQ 133
Query: 364 KRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDVAKASGKTPAE 423
+ IST +S++K N + A A G+
Sbjct: 134 QLIST--------------------------ISNWK----NDLKTPSQAAASAIGER--- 160
Query: 424 FRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDE 483
D I A Y+ L++CN LD+ DLI LL EV + +Q+ + ++VDE
Sbjct: 161 -----DRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEEVRKRWQNKIRYLLVDE 215
Query: 484 FQDTSAMQYSLLQIL-ASHNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTR 542
+QDT+ QY L+++L S R T+VGDDDQSI+S+ GA +DF K I+L +
Sbjct: 216 YQDTNTSQYELVKLLVGSRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPALKVIKLEQ 275
Query: 543 NYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEH 602
NYRS+ I++AA+ LI +N + K + ++ +G+++ + +NE+ + + +++ H
Sbjct: 276 NYRSSGRILKAANILIANNPHVFE-KRLFSELGYGAELKVLSANNEEHEAERVTGELIAH 334
Query: 603 ASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRKKVVRAIIAMLR 661
+ Y AILYR +VF+ + +IP+ I G +F+ + ++ ++A LR
Sbjct: 335 HF---VNKTQYKDYAILYRGNHQSRVFEKFLMQNRIPYKISGGTSFFSRPEIKDLLAYLR 391
Query: 662 TTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKISGTF 721
DD + R+ ++E + + + + R S +A+ D+ +S T
Sbjct: 392 VLTNPDDDSAFLRIVNT---PKREIGPATLKKLGEWAMTRNKSMFTASFDM---GLSQTL 445
Query: 722 KRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLN 781
+ L I +L REP I+AV + M + +L E ++ N
Sbjct: 446 SGRGYEALTRFTHWLAEIQRLAEREP-IAAVRDLIHGMDYESWLYETSPSPKAAEMRMKN 504
Query: 782 EDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFI--DYISERETEH 839
+ L + +T+ L EG+ + V+ F D + E+E
Sbjct: 505 --------VNQLFSWMTEML---------EGSELDEPMTLTQVVTRFTLRDMMERGESE- 546
Query: 840 FRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERR 899
+ + V L T+H SKGLE+ V++ E +P H+ +++E +++EERR
Sbjct: 547 ------EELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP--HQ--SSIDED--NIDEERR 594
Query: 900 LLYVAMTRARKKL-FILYVMMDANWQLL--QPSRFLKEIPHHLREVQAEQSVQDQHENIP 956
L YV +TRA+K+L F L +L+ +PSRFL E+P + E+ V E +
Sbjct: 595 LAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEERMQ 654
Query: 957 EGTAQF 962
+G +
Sbjct: 655 KGQSHL 660
>sp|P45612|UVRD_MYCCT Probable DNA helicase II homolog OS=Mycoplasma capricolum subsp.
capricolum (strain California kid / ATCC 27343 / NCTC
10154) GN=uvrD PE=3 SV=2
Length = 722
Score = 199 bits (505), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 197/736 (26%), Positives = 327/736 (44%), Gaps = 149/736 (20%)
Query: 255 AACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAASEMRDRIG 299
AA ++ P+ I+AG GSGK I PS ILA+TFT AA EM++R+
Sbjct: 16 AAVLNIDKPVRIIAGAGSGKTRVITTKIAYLIEKQNIDPSRILAVTFTNKAAKEMKERVL 75
Query: 300 SIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVR-----L 354
I + K ISTFHS+ ++ R + + +FLI Q+R I A++ L
Sbjct: 76 QITNNS-FKSPFISTFHSWCSKVLRIDGKHIGLEDKFLIIDSDDQKRIIKSALKESNIEL 134
Query: 355 LENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDVA 414
EN+K K+I L + +++ + +D +
Sbjct: 135 SENDKKTFDKKI---------------------------------LYKIKEWKEELVDPS 161
Query: 415 KASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQD 474
+A + K A I Y L N+LD+ DL +L E+ ++++
Sbjct: 162 EAILNATSTLEKNF----AVIYRLYQNTLLKNNSLDFDDLQIYVYRLFKQNNEILNKWRN 217
Query: 475 SWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDSFRKDFL 533
++ ++VDEFQDT+ +Q+SL++ L + N +T+VGD DQ+I+S+ GA + +F K +
Sbjct: 218 AYDYVLVDEFQDTNELQFSLIKFLTINTNHLTVVGDPDQTIYSWRGAKLDIILNFNKTYS 277
Query: 534 NYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCA 593
N I L +NYRST+ I++ ++S I++N R + K + T+N G K+++KEC+++ ++ +
Sbjct: 278 NAISIVLNQNYRSTKQILDISNSFIKNNKFR-EHKEIFTNNKSGKKVVLKECNSKTSEAS 336
Query: 594 FIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IHGVAFYRKKV 652
++ KI E G Y I ILYR + F+ +KIPF I G+ F +KV
Sbjct: 337 YVSSKIKELVKQG----YHYKDIFILYRMNAWSQEFEKELANKKIPFQLIGGIKFRERKV 392
Query: 653 VRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDI 712
++ +A L ++I D +S+ R I +I
Sbjct: 393 IKDAMAFL----------------------------KMISIKDNLSSQRVLGLIPKIGNI 424
Query: 713 FGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVV 772
KI T + L I L+ E ++ S+ + + L+E
Sbjct: 425 TIEKIINTANLNHLN-----------IFDLITNED--KTLLHSITKNLDE--LIEV---- 465
Query: 773 DFDGGKLLNEDN-DLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDY 831
F L DN ++ +L+YLL + K KE+ +++ + A D
Sbjct: 466 -FKTAHQLYLDNTNIEEILKYLL--IQSGYENKLKIRKEQDDLEN--------INALYDQ 514
Query: 832 ISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDI-------------VFVAKANETEIP 878
+ +R E F + + EN L Q + L DI V AK E ++
Sbjct: 515 L-KRFDEDFDPKYYSEENK--LIAFLQEEALTSDIDEAEQIDKVSLLTVHAAKGLENKVV 571
Query: 879 LVHEFNGAVNEKGTS------VEEERRLLYVAMTRARKKLFILYVMMDANWQL---LQPS 929
+ N + S +EEERR LYVA+TRA+ +LF+ YV D + + L+PS
Sbjct: 572 FITGLNQGIFPSRISETSINELEEERRALYVALTRAKDELFLTYVKGDYSHIMQSELKPS 631
Query: 930 RFLKEIPHHLREVQAE 945
+F+ E+ L E + +
Sbjct: 632 KFIHELDKDLYEFETQ 647
>sp|P44804|REP_HAEIN ATP-dependent DNA helicase rep OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rep PE=3 SV=1
Length = 670
Score = 192 bits (488), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 193/718 (26%), Positives = 330/718 (45%), Gaps = 112/718 (15%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN QQ + A ++ P L++AG GSGK G SP I A+TFT AA
Sbjct: 3 LNPQQ-QQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+ +GK +K L +STFH+ + + + L S ++
Sbjct: 62 EMKERVAHSIGKEQSKGLLVSTFHTLGFDILKREYKALGFKSNMTLFD------------ 109
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAM---LFFSMSSFKLCQYNKFERD 409
E+++ ++K ++ D+L D +R + +++ L +F L + K++
Sbjct: 110 ---EHDQFALLKELTADVLKEDKDL--LRELISVISNWKNDLISPKQAFALARDAKYQ-- 162
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
A E Y +R+ NALD+ DLI L EV
Sbjct: 163 ---------------------TFAKCYERYATQIRTYNALDFDDLIMLPTLLFKQNEEVR 201
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDSF 528
++Q + ++VDE+QDT+ QY L+++L T+VGDDDQSI+S+ GA
Sbjct: 202 SKWQAKIRYLLVDEYQDTNTSQYELIKLLVGDRACFTVVGDDDQSIYSWRGARPENMVRL 261
Query: 529 RKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNE 588
R DF I+L +NYRST+ I+ A+ LI +N + K + + G K+++ E NE
Sbjct: 262 RDDFPRLNVIKLEQNYRSTQRILHCANILIDNN-EHVFDKKLFSTIGKGEKLLVIEAKNE 320
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG-VAF 647
+ + I+ +++ H + Y AILYR ++ + + +IP+ I G +F
Sbjct: 321 EHEAERIVAELIAHRFSRK---TKYKDYAILYRGNHQSRLLEKVLMQNRIPYKISGGTSF 377
Query: 648 YRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRV-IDHIDKISTIRKCSFI 706
+ + ++ ++A LR + DD AFL + K+ + + K+ + + I
Sbjct: 378 FSRAEIKDMMAYLRLVVNQDDDA-------AFLRIVNTPKREIGTATLQKLGELAQEKHI 430
Query: 707 SAACDIFG----AKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ 762
S IF +I+ S GR ++ E+ ++ R EP AV + ++ + +
Sbjct: 431 SLFEAIFEFELIQRITPKAYDSLQKFGRWIV---ELNDEIQRSEPE-RAVRSMLSAIHYE 486
Query: 763 KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCI 822
+YL E ++ +++ + L V D L K E N++Q
Sbjct: 487 EYLYE--YATSPKAAEMQSKN------VATLFDWVADML--KGDETNEPMNLNQ------ 530
Query: 823 NVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHE 882
+ ++ R+ R + D+ + V L T+H SKGLE+ V++ E +P H+
Sbjct: 531 -----VVTRLTLRDMLE-RGEDDDDSDQVQLMTLHASKGLEFPYVYLIGMEEGILP--HQ 582
Query: 883 FNGAVNEKGTSVEEERRLLYVAMTRARKKL-FILYVMMDANWQLL--QPSRFLKEIPH 937
+++E +VEEERRL YV +TRA+K+L F L +L+ +PSRFL E+P+
Sbjct: 583 --TSIDE--DNVEEERRLAYVGITRAQKELTFSLCRERRQYGELVRPEPSRFLAELPN 636
>sp|Q4ULN5|UVRD_RICFE Probable DNA helicase II homolog OS=Rickettsia felis (strain ATCC
VR-1525 / URRWXCal2) GN=uvrD PE=3 SV=1
Length = 654
Score = 191 bits (485), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 200/730 (27%), Positives = 320/730 (43%), Gaps = 138/730 (18%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTT 288
++ +LN QQ + A PLL++AG G+GK SP NILA+TFT
Sbjct: 7 FIHTLNPQQ-QKAVLHTKGPLLLLAGAGTGKTKVLTSRIANIVHQNLASPQNILAVTFTN 65
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER--TSEFLIYGHGQQRR 346
AA EM +R+ S++ L I TFHS + ++ R E L + F I H Q +
Sbjct: 66 KAAKEMAERVNSLI---NCYGLNIGTFHSMAARILRDQIEHLNLGLNNRFTIISHDDQLK 122
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
+ + V+L K I T ++ +S +K
Sbjct: 123 LVKDIVKL---------KDIDTKKYAP---------------KLIHIIISRWK------- 151
Query: 407 ERDGMDVAKASGK-TPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
G+ +K S T +++ + E Y L N LD+ DL+ + +L
Sbjct: 152 -DQGLLPSKLSASDTNLPLQRVA----KLVYEEYQKNLLISNVLDFGDLLLYNNELFIKN 206
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISG 524
PE+ + YQ+ ++ I++DE+QDT+ +QY ++LAS + I VGDDDQSI+ + GA++
Sbjct: 207 PEILRYYQEKYRYILIDEYQDTNVVQYLWARMLASLYKNICCVGDDDQSIYGWRGAEVGN 266
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
F KDF I+L +NYRST I+ AAS++I +N R K + TD G KI I
Sbjct: 267 ILRFEKDFAGATIIKLEQNYRSTLPILAAASNVINNNKNR-HGKTLWTDRESGEKIKIIS 325
Query: 585 CHNEDAQCAFI---IDKIL-EHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
C ++ + +I IDK++ E N G+IAIL R + F+ AF +P+
Sbjct: 326 CWSDKEEARYIAGEIDKLVREDRYNA-------GNIAILVRAGFQTRSFEEAFINSAMPY 378
Query: 641 N-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVID--HIDKI 697
I G+ FY + +R ++A +R +L D+ R+ KR I ++KI
Sbjct: 379 KIIGGLRFYERMEIRDVLAYIRISLNQNDNLALERIINV--------PKRAIGAASLNKI 430
Query: 698 STIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRR------EPSISA 751
IS I + L G E + LV + SI A
Sbjct: 431 RVYALERNISNFAAI----------KEMLEMGEIKAKPYETLKDLVTKIDNWHERFSIDA 480
Query: 752 VITSVANMVPQKYLLE--QRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAK 809
I V ++ LE Q + G++ N + LR++ ++ D+ DF+ +
Sbjct: 481 PINVVKAILDDSGYLEMLQEEKTEEAFGRIENINEMLRAIAEF--NDIHDFIEHS-SLVM 537
Query: 810 EEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFV 869
E ++ + G + ++ T+H +KGLE+D+VF+
Sbjct: 538 ENEVLETNYGGSVTIM-----------------------------TLHAAKGLEFDVVFL 568
Query: 870 AKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV-MMDANWQLLQ- 927
E P + +EEERR+ YV +TRA+K L+I + +++++
Sbjct: 569 PGWEEGVFPSQRSLDEE---GEKGLEEERRIAYVGITRAKKDLYITHAESRKIFYEIVRS 625
Query: 928 -PSRFLKEIP 936
PSRF+ EIP
Sbjct: 626 YPSRFITEIP 635
>sp|Q92HZ6|UVRD_RICCN Probable DNA helicase II homolog OS=Rickettsia conorii (strain ATCC
VR-613 / Malish 7) GN=uvrD PE=3 SV=1
Length = 653
Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 196/728 (26%), Positives = 320/728 (43%), Gaps = 134/728 (18%)
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTT 288
++ +LN +Q +A PLL++AG G+GK SP NILA+TFT
Sbjct: 6 FIHTLNPEQQKAVL-HTEGPLLLLAGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTN 64
Query: 289 AAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER--TSEFLIYGHGQQRR 346
AA EM +R+ S++ L I TFHS + ++ R E L + F I H Q +
Sbjct: 65 KAAKEMAERVNSLI---NCYGLNIGTFHSMAARILRDQIEHLNLGLNNRFTIISHDDQLK 121
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
+ + V+ +K I T ++ +S +K
Sbjct: 122 LVKDIVK---------LKDIDTKKYAP---------------KLIHIIISRWK------- 150
Query: 407 ERDGMDVAKAS-GKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
G+ K S T +++ + E Y L N LD+ DL+ + +L
Sbjct: 151 -DQGLLPTKLSVSDTNLPLQRVA----KLVYEEYQKNLLISNVLDFGDLLLYNNELFIKN 205
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISG 524
E+ + YQ+ ++ I++DE+QDT+ +QY ++LAS + I VGDDDQSI+ + GA++
Sbjct: 206 SEILRYYQEKYRYILIDEYQDTNVVQYLWARMLASLYKNICCVGDDDQSIYGWRGAEVGN 265
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
F KDF I+L +NYRST I+ AAS++I +N R K + TD +G KI I
Sbjct: 266 ILRFEKDFAGATIIKLEQNYRSTLPILAAASNVINNNKNR-HGKTLWTDRENGEKIKIIS 324
Query: 585 CHNEDAQCAFI---IDKIL-EHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPF 640
C ++ + +I IDK++ E+ N G+IAIL R + F+ AF +P+
Sbjct: 325 CWSDKEEARYIAGEIDKLVRENRYNA-------GNIAILVRAGFQTRSFEEAFINSAMPY 377
Query: 641 N-IHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKIST 699
I G+ FY + +R ++A +R +L D+ R+ KR I ++
Sbjct: 378 KIIGGLRFYERMEIRDVLAYIRISLNQNDNLALERIINV--------PKRAIGAAS-LNK 428
Query: 700 IRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRR------EPSISAVI 753
IR + + K L G + E + LV + SI A I
Sbjct: 429 IRGYALERNISNFAAIK-------EMLEIGEIKAKSYETLKDLVTKIDNWYERFSIDAPI 481
Query: 754 TSVANMVPQKYLLE--QRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEE 811
V ++ LE Q + G++ N + LR++ ++ DV DF+ + E
Sbjct: 482 NVVKAILDDSGYLEMLQEEKTEEAFGRIENINEMLRAIAEF--NDVHDFIEHS-SLVMEN 538
Query: 812 GNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAK 871
++ + G + ++ T+H +KGLE+D+VF+
Sbjct: 539 EVLETNYGGSVTIM-----------------------------TLHAAKGLEFDVVFLPG 569
Query: 872 ANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV-MMDANWQLLQ--P 928
E P + +EEERR+ YV +TRA+K L+I + +++++ P
Sbjct: 570 WEEGVFPSQRSLDEE---GEKGLEEERRIAYVGITRAKKDLYITHAESRKIFYEIVRSYP 626
Query: 929 SRFLKEIP 936
SRF+ EIP
Sbjct: 627 SRFITEIP 634
>sp|O31626|YJCD_BACSU Putative ATP-dependent DNA helicase YjcD OS=Bacillus subtilis
(strain 168) GN=yjcD PE=1 SV=1
Length = 759
Score = 174 bits (440), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 140/487 (28%), Positives = 232/487 (47%), Gaps = 64/487 (13%)
Query: 435 ILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSL 494
+ E+Y + + D+ D+ S +L P++ ++YQ + I++DEFQD + +QY +
Sbjct: 300 LYEHYERQKKEHSQFDFDDMASACYELFIERPDLLEQYQSRFTYILIDEFQDINPVQYKI 359
Query: 495 LQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEA 553
+Q+LAS + VGDDDQSI++F G++ S F+KD+ K I LT NYRST IV +
Sbjct: 360 MQMLASPEQNLCCVGDDDQSIYAFRGSNPSFILDFQKDYPGAKTIYLTANYRSTHPIVSS 419
Query: 554 ASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSY 613
A +++ N R K ++ ++ ++E+ + ++ I E NG S
Sbjct: 420 ADIVVKKNKNRYA-KTLEAARDDIQVPVLFYPYDEEEEATMVVSDIKEKIQNG----ASP 474
Query: 614 GSIAILYRRQVSGKVFQTAFRERKIPFNI-HGV-AFYRKKVVRAIIAMLRTTLPGCDDGP 671
A+LYR G+ + IP+ GV +FY +++VR I+A L + D
Sbjct: 475 EDFAVLYRTNSGGRAIYERLHQSSIPYTADRGVQSFYSRRIVRQILAYLYASQNEDDTEA 534
Query: 672 YRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRK 731
+ + A L K+ ++ + +S C+ I A + K QL + +K
Sbjct: 535 IKHLLPALFL-----KQSALNTLKALSITEDCTMIKALAKL------PDLKPFQLDKIKK 583
Query: 732 VLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLR--SV 789
+ + + L +P + A+ + M +YL ++ +G KL +DLR V
Sbjct: 584 I---VPFFASLRTMKP-VEAITFAEGKMGFSEYLKKRGN----EGNKLEKGSDDLRDIKV 635
Query: 790 LQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNEN 849
+ + DFL A +D++ R E RT +E+
Sbjct: 636 VAKKFKTIPDFL-------------------------AHVDHM--RAAEKNRT----DEH 664
Query: 850 SVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKG--TSVEEERRLLYVAMTR 907
V L TIH+SKGLE+ V+V + IP H+F+ KG ++EEERRLLYVAMTR
Sbjct: 665 GVQLMTIHRSKGLEFKTVYVLGTVDGSIP--HDFSLETARKGDEAALEEERRLLYVAMTR 722
Query: 908 ARKKLFI 914
A++ L++
Sbjct: 723 AKQHLYL 729
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 19/123 (15%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAA 291
LN QL+A + PLL++AG GSGK GI P N+L +TFTT A
Sbjct: 135 GLNTDQLKAVT-ETEGPLLVLAGAGSGKTRVLTARAAHMIEHLGIPPENMLLVTFTTKAV 193
Query: 292 SEMRDRIGSIVG--KATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
+EM++R+ + G A + + TFHS ++ H+ + E L+ Q+ + I
Sbjct: 194 AEMKERMANQYGLQPAKVRRIVTGTFHSLFYKIL-YHSNSAKWNGEHLLKMEWQREQYIK 252
Query: 350 EAV 352
+A+
Sbjct: 253 KAL 255
>sp|P57654|REP_BUCAI ATP-dependent DNA helicase rep OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=rep PE=3 SV=1
Length = 645
Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 131/446 (29%), Positives = 210/446 (47%), Gaps = 59/446 (13%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAA 291
SLN Q + A + P LI+AG GSGK P NI A+TFT AA
Sbjct: 2 SLNFSQ-KNAVELTNGPCLILAGAGSGKTKVIINKIIYLINHCQYEPDNIAAVTFTNKAA 60
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEA 351
EMR R+ + K++ ISTFHS L++ + + LE + F +
Sbjct: 61 YEMRIRLSKYLNIPEIKKIIISTFHSLGLEIIKKEIDALELNNNFTL------------- 107
Query: 352 VRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGM 411
L E ++IL++K+I + + + L F +S +K NKF
Sbjct: 108 --LDEKDQILLLKKICKKEIKNN----------IQLLKKLNFMISYWK----NKFLTPLQ 151
Query: 412 DVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQE 471
A +F A + E Y L N LD+ DLI LL ++
Sbjct: 152 VQLLAKSSQEKDF--------AYVYEQYTNYLYKANILDFDDLICMPTLLLKNNKKIKIR 203
Query: 472 YQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFDSFRK 530
+Q ++VDE+QDT+ QY L+++LA+ N T+VGDDDQSI+S+ GA+ +K
Sbjct: 204 WQKKISYLLVDEYQDTNNSQYELIKMLANKNSDFTLVGDDDQSIYSWRGANPQNIFLLKK 263
Query: 531 DFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDA 590
DF N K I++ NYRS+ I++AA+SLI +N+ + K + + +G+ I + NE+
Sbjct: 264 DFPNLKIIKMEHNYRSSGRILKAANSLIANNIHYLE-KKLFSQLKYGNLIKVLIGKNEEN 322
Query: 591 QCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI-HGVAFYR 649
+ I+ KI+ + Y AILYR ++ + A + IP+NI +F+
Sbjct: 323 EAQKIVKKIISQYAKKK---IKYRDFAILYRGNYQSRILEKALIKENIPYNISEKSSFFS 379
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRV 675
+ ++ +++ LR + D+ + R+
Sbjct: 380 RPEIKDLLSYLRVVINRDDNHAFMRI 405
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 55/98 (56%), Gaps = 15/98 (15%)
Query: 846 DNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGT---SVEEERRLLY 902
+ ++ V L T+H SKGLE+ VF+ E +P N+K ++EEERRL Y
Sbjct: 547 EQQDRVQLMTLHASKGLEFPAVFIIGMCEGILP---------NQKSIDNDNIEEERRLTY 597
Query: 903 VAMTRARKKLFILYVMMDANW-QLLQ--PSRFLKEIPH 937
V +TRA+K+LF Y + Q+L PSRFL E+P
Sbjct: 598 VGITRAKKQLFFTYCYKRTQYGQILDMLPSRFLFELPQ 635
>sp|Q02322|UVRD_HAEIN DNA helicase II OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=uvrD PE=1 SV=2
Length = 727
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 145/531 (27%), Positives = 228/531 (42%), Gaps = 96/531 (18%)
Query: 435 ILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSL 494
I + Y +D+ +L+ +L P + Q YQ ++ I+VDEFQDT+ +QY
Sbjct: 178 IYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVDEFQDTNKIQYKW 237
Query: 495 LQILASH-NRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEA 553
++ILA ++ IVGDDDQSI+ + GA I F KDF + IRL +NYRST I+ +
Sbjct: 238 IKILAGKTGQVMIVGDDDQSIYGWRGAQIENIQKFLKDF-KAETIRLEQNYRSTANILNS 296
Query: 554 ASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSY 613
A+ LI +N R KN+ T+ G + I NE + F+ +I + +G
Sbjct: 297 ANELIANNSDRLG-KNLWTEGEKGDPVGIYSAFNELDEAKFVASQIQDWVEHG----GKL 351
Query: 614 GSIAILYRRQVSGKVFQTAFRERKIPFNIHGVAFYRKKVVRAIIAMLRTTLPGCDDGPYR 673
A+LYR +V + A++R +P
Sbjct: 352 DDCAVLYRSNSQSRVIEE--------------------------ALIRCQIP-------Y 378
Query: 674 RVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVL 733
R++ E++E K D ++ +R I+ D F+R T R +
Sbjct: 379 RIYGGMRFFERQEIK------DALAYLR---LINNRQD------DAAFERVINTPTRGIG 423
Query: 734 -LTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQY 792
TL+++ L R E I+ + + Q+ +L RA + L L +
Sbjct: 424 DRTLDILRNLTR-ERQIT--LWQAVQVATQENMLAGRASTALLRFQELINSLQLDTAEMP 480
Query: 793 LLADVTDFLSTKFTAAKEEGNVDQDKKGCINV------------------------LKAF 828
L A TDF+ K + E ++ +KG + + L AF
Sbjct: 481 LFAQ-TDFV-IKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKPDNAEEMTELTAF 538
Query: 829 IDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVN 888
+ + S E Q +++ V + T+H +KGLE+ VF+ E P F
Sbjct: 539 LTHASLEAGEE---QASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPSFRSF----- 590
Query: 889 EKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEIP 936
E+ +EEERRL YV +TRA+KKL I Y + A + PSRF+ E+P
Sbjct: 591 EEPGRLEEERRLAYVGITRAKKKLTISYAESRRLYAKEERHLPSRFIAELP 641
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 53/103 (51%), Gaps = 19/103 (18%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTF 286
S+ L LND+Q E + L ++AG GSGK IS +I+A+TF
Sbjct: 5 SELLDGLNDKQRERVAAPLGNHL-VLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVTF 63
Query: 287 TTAAASEMRDRIGSIVGKATAKEL---TISTFHSFSLQLCRSH 326
T AA+EMR RI S + K +L I TFHS + +L R+H
Sbjct: 64 TNKAAAEMRHRIQSTLAKHAQHQLFGMWIGTFHSIAHRLLRAH 106
>sp|P75438|Y340_MYCPN Probable DNA helicase MPN_340 OS=Mycoplasma pneumoniae (strain ATCC
29342 / M129) GN=MPN_340 PE=3 SV=1
Length = 529
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 111/422 (26%), Positives = 190/422 (45%), Gaps = 72/422 (17%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
++ LN +Q A D + + +G G+GK G++P +ILA TFT
Sbjct: 1 MEHLNQEQKAAVTCDNGVNV-VYSGAGTGKTTVIAERFAYLVNEKGVNPQSILAFTFTDK 59
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEK----LERTSEFLI-YGHGQQ 344
AASEMR RI ++ + + ++L I TFHSF+ + + H + L ++ F Y G Q
Sbjct: 60 AASEMRQRIIKLIPQKSLQDLHIYTFHSFANRFLQKHGKSDFAILSDSNRFFSDYEMGDQ 119
Query: 345 RRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYN 404
+ ++E + K D+ + + S+F+ +
Sbjct: 120 LQTVVE-----------IYKNKVVDLELDNLEYN-----------------SAFRDACTD 151
Query: 405 KFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLST 464
F D ++ +FRK A L Y L + N D+ DLI + LL
Sbjct: 152 TFNEDFSTISNG------QFRKRA----ATALRAYQNYLITNNLFDFSDLIIETCHLLKG 201
Query: 465 FPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADIS 523
E+ Q + +S I+VDEFQDT+ QY L+++LA +H + +VGD +Q I+ + GA +
Sbjct: 202 NSELLQAFTESVHYILVDEFQDTNLAQYELVKLLATTHPNLFLVGDSNQMIYGWRGAVVE 261
Query: 524 GFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKII-- 581
F+ + DF KE T+NYRS + ++ A+ ++ ++ + V +S SK +
Sbjct: 262 IFELLKNDFQAVKEFYTTQNYRSIQAVLAVANDVLTAIARKERKALVLLHSSIDSKAVPV 321
Query: 582 ---IKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVF-QTAFRERK 637
N+D + + ++ H +NG Y +A+L+R+ F QT +
Sbjct: 322 HYKANSLKNQDQWIIYQMKQL--HLNNG----VPYDQMAVLFRKNKHLDAFSQTVLEDGD 375
Query: 638 IP 639
+P
Sbjct: 376 LP 377
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 851 VTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARK 910
+ L TIH +KGLE++ VFV E P +H ++G+ K + EE +L YVA+TRA++
Sbjct: 381 LNLLTIHAAKGLEFEAVFVYGLVERAFPSLH-WDGSDKHK---LLEEMKLFYVAITRAKQ 436
Query: 911 KLFILYVMMDANWQLLQPSRFLKEIPHHLREVQAEQSVQDQHENIPEGTAQFT 963
LF++ V +++ +PSRFLK I + Q ++Q + P+ +T
Sbjct: 437 FLFLVSVSVESFNAYYEPSRFLKLIEKEHLQTQKAAYFKEQLKTQPKPVNLYT 489
>sp|Q10213|SRS2_SCHPO ATP-dependent DNA helicase srs2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=srs2 PE=3 SV=1
Length = 887
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 119/438 (27%), Positives = 197/438 (44%), Gaps = 41/438 (9%)
Query: 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTF 286
S YL+ LN++Q + I+AGPGSGK I+ +++ TF
Sbjct: 5 SSYLKFLNEEQ-RISVQSPHKYTQILAGPGSGKTRVLTARVAYLLQKNHIAAEDLIIATF 63
Query: 287 TTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRR 346
T AA+E++ RI +I+G + A +L TFHS + + + + + +S +LI +
Sbjct: 64 TNKAANEIKLRIEAILGNSEASKLISGTFHSIAYKYLVKYGKHIGLSSNWLIADRNDTQA 123
Query: 347 AIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKF 406
+ + L+ K + I LT R + N +L
Sbjct: 124 IMKRLLDSLKKAKNPIASGIRGQELTPQNALN--RITKLKSNGLLV-------------- 167
Query: 407 ERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP 466
+ GMD +++ + Y L N D+ DL+ + LL P
Sbjct: 168 -KPGMDQLSLINGLEEPPKELQSHQSVELYRLYQTSLWKNNLADFDDLLLNFILLLQKQP 226
Query: 467 EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGF 525
+ + K I++DEFQDTS +QY L+++LA N ITIVGD DQSI+ F A+I
Sbjct: 227 DCVRNI----KHILIDEFQDTSKIQYFLVKLLALQNSDITIVGDPDQSIYGFRSAEIRNL 282
Query: 526 DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKEC 585
+ +DF + + L RNYRS + I+E A S+I + R + K +++++ K +
Sbjct: 283 NQMSEDFEGTQVLHLERNYRSAKPILELALSIISQDKSRPK-KGLKSNHISSLKPHYRLF 341
Query: 586 HNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGV 645
+ + +I +I + P I Y IAIL R + + A E +P+ + GV
Sbjct: 342 ETNNKESYWIAREIKRIVGSCPELIF-YNDIAILVRSSSLTRSLEHALSELGVPYRMVGV 400
Query: 646 -AFYRKKVVRAIIAMLRT 662
F+ ++ +R +IA LR
Sbjct: 401 NKFFDREEIRDLIAYLRV 418
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 843 QRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLY 902
Q+ VT++T+H +KGLEW +VF+ E IP + + ++EERRLLY
Sbjct: 579 QKEGESQKVTISTLHAAKGLEWPVVFLPCLCENIIP---------HSRSDDLDEERRLLY 629
Query: 903 VAMTRARKKLFI 914
V TRA+ L++
Sbjct: 630 VGATRAQALLYL 641
>sp|P12954|SRS2_YEAST ATP-dependent DNA helicase SRS2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SRS2 PE=1 SV=2
Length = 1174
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 122/457 (26%), Positives = 202/457 (44%), Gaps = 66/457 (14%)
Query: 239 DEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILA 283
D + + LN QQ AA D + L ++AGPG+GK I P +I+
Sbjct: 6 DLWLHLVSQLNTQQRAAALFDYTRGLQVIAGPGTGKTKVLTSRVAYLILHHHIHPRDIIV 65
Query: 284 MTFTTAAASEMRDRIGSIVGKATAK--ELTISTFHSFSLQLCRSHAEKLERTSEFLIYGH 341
TFT AA+EM++R+ ++ A EL I TFHS L++ +GH
Sbjct: 66 TTFTNKAANEMKERLQEMLRGAGVNISELLIGTFHSICLKILYR-------------FGH 112
Query: 342 GQQRRAIIEAVRLLENEKILVVKRIST---DML--TTDGHFGYMRASLFMMNAMLFFSMS 396
V L ++ +I+ K I DM+ D Y + +N + S +
Sbjct: 113 ---------LVDLQKDWRIIDEKEIDVILDDMIEKVPDQIRDYASSITRKVN-LCMPSKN 162
Query: 397 SFKLCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAIL----ENYNGILRSCNALDYH 452
+ + K + + K++ P E+ I D A L + Y L N LD+
Sbjct: 163 GDEWTIHPKLIKKQISKLKSNAILPEEY--ILDSNHDAALGYFYQIYQSELSKKNTLDFD 220
Query: 453 DLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-----ITIV 507
DL+ + +LL+ + K ++VDEFQDT+ +Q L+ + A N +TIV
Sbjct: 221 DLLMYTFRLLTRV-----RVLSNIKHVLVDEFQDTNGIQLDLMFLFAKGNHHLSRGMTIV 275
Query: 508 GDDDQSIFSFNGADISGF-DSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLI-QHNVKRC 565
GD DQSI++F A F + RK + Y I L NYRS++ I+ + LI Q N R
Sbjct: 276 GDPDQSIYAFRNALAHNFLEMGRKCPIEYSTIILVENYRSSQKILNTSEILITQQNKGRQ 335
Query: 566 QLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVS 625
++ + + ++ ++L + P ++ ++ AIL R++
Sbjct: 336 NRAPLRAQFDLDFPPVYMNFPAYFLEAPSLVRELL-YLKALP-NLFTFNDFAILVRQRRQ 393
Query: 626 GKVFQTAFRERKIPFN-IHGVAFYRKKVVRAIIAMLR 661
K ++A E +IP+ I G +F+ K RA++ +L+
Sbjct: 394 IKRIESALIEHRIPYKIIRGHSFWDSKETRAMLNLLK 430
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 28/90 (31%)
Query: 851 VTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGA-------------------VNEKG 891
VT++TIH +KGLEW +VF+ E IP V FN + K
Sbjct: 644 VTISTIHGAKGLEWPVVFIPGCEEGIIPCV--FNDDKKDESEEDEEEDQENSKKDASPKK 701
Query: 892 T-------SVEEERRLLYVAMTRARKKLFI 914
T S++EERR+ +VA TRA+ L++
Sbjct: 702 TRVLSVEDSIDEERRMFFVAQTRAKYLLYL 731
>sp|P75437|UVRD_MYCPN Probable DNA helicase II homolog OS=Mycoplasma pneumoniae (strain
ATCC 29342 / M129) GN=uvrD PE=3 SV=1
Length = 715
Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 115/412 (27%), Positives = 192/412 (46%), Gaps = 87/412 (21%)
Query: 248 LNDQQLEAA-CGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAA 291
LN +Q A CG ++ +G G+GK I+PSNILA+T+T AA
Sbjct: 9 LNKEQRAAVTCGKGVN--IVYSGAGTGKTTIISQRFAYLFNQKRINPSNILALTYTRKAA 66
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEA 351
SEM+ RI ++ + K++ I TFHSF + R +K F+I
Sbjct: 67 SEMKQRILELLPEKYHKDVNIYTFHSFCSRFLREEGQK-----NFVIDDDLSNFLKDFLK 121
Query: 352 VRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFK-------LCQYN 404
L+++K+L + DG NA F +S K LC+++
Sbjct: 122 ESELKSQKVLQI---------IDG----------FKNAYFDFDTNSLKDDERLVELCEFH 162
Query: 405 KFERDGMDVAKASGKTPAE--FRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLL 462
+D P E F+ + AA +E Y + N +D+ DL+ + LL
Sbjct: 163 ------LD--------PQERNFQLFKETAIAAFVE-YEKGKQQNNKIDFADLLIKTCTLL 207
Query: 463 STFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGAD 521
S ++ +++ ++ I+ DEFQDT+ +QY L+++LASH++ + +VGD++Q I+ + GA
Sbjct: 208 SKDHKLLRKWSKKFQYILGDEFQDTNQIQYELIKMLASHHQNLFLVGDNNQMIYRWRGAV 267
Query: 522 ISGFDSFRKDF--LNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHG-- 577
DS + DF E +T+NYR + I+ A+S++ K Q D++ G
Sbjct: 268 SDIIDSLKSDFKVRPENEFYITQNYRCDQNILTVANSIL----GTIYAKENQPDSTKGFL 323
Query: 578 -SKI------IIKECHNEDAQCAFIIDKILE-HASNGPASICSYGSIAILYR 621
S I + + + + Q ++II+KI H ++G Y +AIL+R
Sbjct: 324 FSAIKSNRLPVYFQASSVEGQHSWIINKIKNLHKNHG----IQYKDMAILFR 371
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 4/92 (4%)
Query: 844 RHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYV 903
+ +N + L T+H +KGLE++ VF+ N+ PL + N ++ + +E RL YV
Sbjct: 537 KQSKDNVINLITVHSAKGLEFEAVFIYGINQDNFPLKSK-NQIIDLQREL--DELRLFYV 593
Query: 904 AMTRARKKLFILYVMMDANWQLLQPSRFLKEI 935
A+TRA+K LF+L V + +++ PS+F++ I
Sbjct: 594 ALTRAKKYLFLLSVYQMSG-EIIYPSKFIRFI 624
>sp|P64320|UVRD2_MYCTU ATP-dependent DNA helicase UvrD2 OS=Mycobacterium tuberculosis
GN=uvrD2 PE=1 SV=1
Length = 700
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 112/461 (24%), Positives = 187/461 (40%), Gaps = 94/461 (20%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
+ L+DQQ EA P+ ++AG G+GK ++ +LA+TFT
Sbjct: 9 IAGLDDQQREAVLAPRG-PVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQR 67
Query: 290 AASEMRDRI---------GSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYG 340
AA EMR R+ GS VG A TFH+ + + R ++ I
Sbjct: 68 AAGEMRSRLRALDAAARTGSGVGAVQAL-----TFHAAAYRQLRYFWSRV-------IAD 115
Query: 341 HGQQRRAIIEAVRLLENEKILVVKRIST---------DMLTTDGHFGYMRASLFMMNAML 391
G Q L + K VV R ++ D+ G + +ASL +
Sbjct: 116 TGWQ----------LLDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYV 165
Query: 392 FFSMSSFKLCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDY 451
VA A P + +I AA+ Y + + +
Sbjct: 166 -------------------TAVAAARRDPPLDAAQI-----AAVYSEYEALKARGDGVTL 201
Query: 452 HDLISCSVKLLSTF---PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQI-LASHNRITIV 507
D + + V +E+QD ++ +VDE+QD + +Q +L L + +T+V
Sbjct: 202 LDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTPLQQRVLSAWLGDRDDLTVV 261
Query: 508 GDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQL 567
GD +Q+I+SF GA F + F + +RL R+YRST +V A+ +I R
Sbjct: 262 GDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTPQVVSLANRVIAAARGRVAG 321
Query: 568 KNVQTDNSH--GSKIIIKECHNEDAQCAFIIDKILEHASNG-PASICSYGSIAILYRRQV 624
++ G E +E A+ A + I ++G P S +AILYR
Sbjct: 322 SKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIASGTPPS-----EVAILYRVNA 376
Query: 625 SGKVFQTAFRERKIPFNIHGVA--FYRKKVVRAIIAMLRTT 663
+V++ A + I + + G F R+++ +A++A+ R +
Sbjct: 377 QSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVS 417
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 849 NSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRA 908
VTL ++H +KGLEWD VF+ + +P+ H N + VEEERRLLYV +TRA
Sbjct: 494 QGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSE--PVEEERRLLYVGITRA 551
Query: 909 RKKLFILYVM--MDANWQLLQPSRFLKEIPHHLR 940
R L + + + Q +PSRFL I R
Sbjct: 552 RVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTR 585
>sp|P64321|UVRD2_MYCBO ATP-dependent DNA helicase UvrD2 OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=uvrD2 PE=3 SV=1
Length = 700
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 112/461 (24%), Positives = 187/461 (40%), Gaps = 94/461 (20%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTA 289
+ L+DQQ EA P+ ++AG G+GK ++ +LA+TFT
Sbjct: 9 IAGLDDQQREAVLAPRG-PVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQR 67
Query: 290 AASEMRDRI---------GSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYG 340
AA EMR R+ GS VG A TFH+ + + R ++ I
Sbjct: 68 AAGEMRSRLRALDAAARTGSGVGAVQAL-----TFHAAAYRQLRYFWSRV-------IAD 115
Query: 341 HGQQRRAIIEAVRLLENEKILVVKRIST---------DMLTTDGHFGYMRASLFMMNAML 391
G Q L + K VV R ++ D+ G + +ASL +
Sbjct: 116 TGWQ----------LLDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYV 165
Query: 392 FFSMSSFKLCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDY 451
VA A P + +I AA+ Y + + +
Sbjct: 166 -------------------TAVAAARRDPPLDAAQI-----AAVYSEYEALKARGDGVTL 201
Query: 452 HDLISCSVKLLSTF---PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQI-LASHNRITIV 507
D + + V +E+QD ++ +VDE+QD + +Q +L L + +T+V
Sbjct: 202 LDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTPLQQRVLSAWLGDRDDLTVV 261
Query: 508 GDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQL 567
GD +Q+I+SF GA F + F + +RL R+YRST +V A+ +I R
Sbjct: 262 GDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTPQVVSLANRVIAAARGRVAG 321
Query: 568 KNVQTDNSH--GSKIIIKECHNEDAQCAFIIDKILEHASNG-PASICSYGSIAILYRRQV 624
++ G E +E A+ A + I ++G P S +AILYR
Sbjct: 322 SKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIASGTPPS-----EVAILYRVNA 376
Query: 625 SGKVFQTAFRERKIPFNIHGVA--FYRKKVVRAIIAMLRTT 663
+V++ A + I + + G F R+++ +A++A+ R +
Sbjct: 377 QSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVS 417
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 849 NSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRA 908
VTL ++H +KGLEWD VF+ + +P+ H N + VEEERRLLYV +TRA
Sbjct: 494 QGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSE--PVEEERRLLYVGITRA 551
Query: 909 RKKLFILYVM--MDANWQLLQPSRFLKEIPHHLR 940
R L + + + Q +PSRFL I R
Sbjct: 552 RVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTR 585
>sp|P15038|HELD_ECOLI Helicase IV OS=Escherichia coli (strain K12) GN=helD PE=1 SV=2
Length = 684
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 109/398 (27%), Positives = 178/398 (44%), Gaps = 46/398 (11%)
Query: 234 TQNMPDEYSKYLQS-----LNDQQLEAAC-GDMSTPLLIVAGPGSGKG------------ 275
T+ M EY+ + + LN Q A G+ S LL++AG GSGK
Sbjct: 178 TEAMLTEYADFFRQVESSPLNPAQARAVVNGEHS--LLVLAGAGSGKTSVLVARAGWLLA 235
Query: 276 ---ISPSNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLER 332
SP IL + F AA EM +RI + +++T TFH+ +L + + ++K+
Sbjct: 236 RGEASPEQILLLAFGRKAAEEMDERIRE---RLHTEDITARTFHALALHIIQQGSKKVPI 292
Query: 333 TSEFLIYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLF 392
S+ L + I R +EK K LT + + + F + L
Sbjct: 293 VSK-LENDTAARHELFIAEWRKQCSEKKAQAKGWR-QWLTEEMQWSVPEGN-FWDDEKLQ 349
Query: 393 FSMSSFKLCQYNKFER-DGMDVAKASGKTPAEFRKIGDE---IGAAILENYNGILRSCNA 448
++S +L ++ R G A+ P E R + + + A +L+ + G L++ NA
Sbjct: 350 RRLAS-RLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENA 408
Query: 449 LDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITI-- 506
+D+ LI ++ +L + WK I+VDEFQD S + +LL L N T
Sbjct: 409 VDFSGLIHQAIVILEK-----GRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLF 463
Query: 507 -VGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRC 565
VGDD Q+I+ F+GA +S +F ++F + L YR I E A+ IQ N
Sbjct: 464 AVGDDWQAIYRFSGAQMSLTTAFHENFGEGERCDLDTTYRFNSRIGEVANRFIQQNP--G 521
Query: 566 QLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHA 603
QLK ++G K + +++Q ++DK+ +A
Sbjct: 522 QLKKPLNSLTNGDKKAVTLL--DESQLDALLDKLSGYA 557
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 25/82 (30%)
Query: 851 VTLTTIHQSKGLEWDIV-----------FVAKANET-----EIPLVHEFNGAVNEKGTSV 894
+ TIH SKG + D V F A A E+ +P V +F A
Sbjct: 589 IDFMTIHASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPDA-------- 640
Query: 895 EEERRLLYVAMTRARKKLFILY 916
EERRL+YVA+TRAR +++ L+
Sbjct: 641 -EERRLMYVALTRARHRVWALF 661
>sp|P47486|UVRD_MYCGE Probable DNA helicase II homolog OS=Mycoplasma genitalium (strain
ATCC 33530 / G-37 / NCTC 10195) GN=uvrD PE=3 SV=1
Length = 703
Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 185/404 (45%), Gaps = 69/404 (17%)
Query: 248 LNDQQLEA-ACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAA 291
+N+QQ +A +CG ++ +G G+GK + PS ILA+TFT AA
Sbjct: 1 MNEQQKQAISCGKGVN--VVYSGAGTGKTTIITNRFAYLVNKEKVDPSRILAITFTKKAA 58
Query: 292 SEMRDRIGSIVGKATAKELTISTFHS----FSLQLCRSHAEKLERTSEFLIYGHGQQRRA 347
EM+ RI ++ + A++ I TFHS F +Q + + S FL +
Sbjct: 59 KEMQFRILKLIDSSLAEKTNIYTFHSFCNKFLIQTLKKRFIIDDDISYFLKEFLADSKLD 118
Query: 348 IIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFE 407
I A ++++N K F + + L LC+++
Sbjct: 119 INLAKQIIDNFK---------------NTFADFEINKLDQDERLI------SLCEHSLLN 157
Query: 408 RDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467
+D ++ KT I A I N IL N LD+HDL+ + LLS +
Sbjct: 158 KDE---EYSTLKTQL--------INAFISYEKNKILN--NKLDFHDLLIKTCNLLSNDND 204
Query: 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNR-ITIVGDDDQSIFSFNGADISGFD 526
+ ++ + ++ I+VDEFQDT+ +QY L+++L + N+ + +VGD++Q I+ + GA
Sbjct: 205 LLNQWSEQFQHILVDEFQDTNQIQYELIKMLVTKNKNLFLVGDNNQMIYRWRGAVNGIIT 264
Query: 527 SFRKDFLNYK--EIRLTRNYRSTRCIVEAASSLI------QHNVKRCQLKNVQTDNSHGS 578
+ + DF K E + +NYR + I+ A+ ++ + VK + T NS
Sbjct: 265 ALKHDFNVPKSNEFFINQNYRCDQNILAVANQILLKIMAYEKQVKTEKNLLFSTLNS-DK 323
Query: 579 KIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRR 622
K + + + + Q +I +KI A N I ++ +AIL+R+
Sbjct: 324 KPVYFQAESVENQANWIFNKI--KALNQTEKI-NFKDMAILFRK 364
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 53/87 (60%), Gaps = 4/87 (4%)
Query: 849 NSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRA 908
+++ L T+H +KGLE++ VF+ N+ + PL N N++ + +E +L YVA+TRA
Sbjct: 530 DTINLLTVHAAKGLEFEAVFIYGMNQGDFPLFLSQNQ--NDEQHLI-DELKLFYVAITRA 586
Query: 909 RKKLFILYVMMDANWQLLQPSRFLKEI 935
++ LFI V+ N ++PS FL I
Sbjct: 587 KRFLFITAVLQINN-NSIKPSSFLNYI 612
>sp|P53528|UVRD2_MYCLE ATP-dependent DNA helicase UvrD2 OS=Mycobacterium leprae (strain
TN) GN=uvrD2 PE=3 SV=2
Length = 714
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 111/455 (24%), Positives = 185/455 (40%), Gaps = 83/455 (18%)
Query: 247 SLNDQQLEAACGDMSTPLLIVAGPGSGKG---------------ISPSNILAMTFTTAAA 291
L+D+Q EA P+ ++AG G+GK ++ +LA+TFT AA
Sbjct: 11 GLDDEQREAVLAPRG-PVCVLAGAGTGKTRTITHRIAHLVGAGHVATGQVLAVTFTQRAA 69
Query: 292 SEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQR----RA 347
+EMR R+ ++ A +S F + R F H Q R R
Sbjct: 70 AEMRSRLRALGAAVQA----VSDF-------------GVVRVLTFHAAAHRQLRYFWPRV 112
Query: 348 IIEAVRLLENEKILVVKRIST---------DMLTTDGHFGYMRASLFMMNAMLFFSMSSF 398
I + L + K V R ++ D+ G + +ASL +
Sbjct: 113 IGDTGWQLLDSKFATVARAASSVRLHAGTDDVCDLAGEIEWAKASLIGPEEYV------- 165
Query: 399 KLCQYNKFERDGMDVAKASGKTPAEFRKIGDEIGA--AILENYNGILRSCNALDYHDLIS 456
VA TP + +I A A+ NG+ LD+ DL+
Sbjct: 166 ------------AAVAAIGRDTPLDAAQIASVYAAYEALKARGNGV-PGVTLLDFDDLLL 212
Query: 457 CSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQI-LASHNRITIVGDDDQSIF 515
+ + V +E++D ++ +VDE+QD + +Q +L L + +T+VGD +Q+I+
Sbjct: 213 HTAAAIENDAAVAEEFRDRYRCFVVDEYQDVTPLQQRVLSAWLGDRDDLTVVGDANQTIY 272
Query: 516 SFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS 575
SF GA F + F + +RL R+YRST +V A+ +I R Q
Sbjct: 273 SFTGASPCFLLDFPRRFPDATVVRLERDYRSTPQVVSLANQVIAAAHGRVADSKFQLSGQ 332
Query: 576 H--GSKIIIKECHNED---AQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQ 630
G E +E A A I +++E + S IA+LYR + ++
Sbjct: 333 REPGPAASFHEYSDEPAEAAAVAASIARLIEFGT-------SPSEIAVLYRVNAQSEAYE 385
Query: 631 TAFRERKIPFNIHGVA--FYRKKVVRAIIAMLRTT 663
A E I + + G F R+++ +A++A+ R+
Sbjct: 386 EALTEVGIAYQVRGGEGFFNRQEIKQALLALQRSA 420
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 6/90 (6%)
Query: 849 NSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEF-NGAVNEKGTSVEEERRLLYVAMTR 907
VTL ++H KGLEWD VF+ + +P+ +GA +E VEEERRLLYV +TR
Sbjct: 501 QGVTLASLHAVKGLEWDAVFLVGLADGTLPISRALAHGAESEP---VEEERRLLYVGITR 557
Query: 908 ARKKLFILYVM--MDANWQLLQPSRFLKEI 935
AR L + + + Q +PSRFL +I
Sbjct: 558 ARVYLALSWALSRTPGGRQSRKPSRFLNDI 587
>sp|B9DIS2|ADDA_STACT ATP-dependent helicase/nuclease subunit A OS=Staphylococcus
carnosus (strain TM300) GN=addA PE=3 SV=1
Length = 1220
Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 129/593 (21%), Positives = 252/593 (42%), Gaps = 121/593 (20%)
Query: 401 CQYNKFERDGMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVK 460
Q + F R D+ KA A ++ +I +++ ++ RS N LD+ D ++K
Sbjct: 316 VQQDYFSRSAEDL-KADMAKLAPRVEVLSQITRDVIDTFSKKKRSRNILDFSDYEHFALK 374
Query: 461 LL----STFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILA----SHNRITIVGDDDQ 512
+L T ++ + Y++ + I+VDE+QDT+ +Q +L + + + +VGD Q
Sbjct: 375 ILMNEDGTPTDLAKHYRNGFDEILVDEYQDTNRVQEQILSCIKRGDETDGNLFMVGDVKQ 434
Query: 513 SIFSFNGAD----ISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLK 568
SI+ F AD I + F D I L++N+RS ++ + L +H + +
Sbjct: 435 SIYKFRQADPSLFIEKYSRFSHDGTTGMRIDLSQNFRSRPEVLSTTNYLFKHMMDESVGE 494
Query: 569 NVQTDNS---HGS-----------KIIIKECHNE----DAQCAFI---IDKILEH----- 602
+ + + +G+ +++++ +E + + +I +++I+ H
Sbjct: 495 IIYDEAAQLYYGAPFDDKPHPLNLNVMVEDKESELTGTEQEAEYIANQVEEIMNHREVYD 554
Query: 603 ASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGV-AFYRKKVVRAIIAMLR 661
G SY I IL R + Q AF+ R IPF+++ ++ + VR +++ LR
Sbjct: 555 MGTGSYRKPSYKDIVILERGYNRSRELQQAFKNRDIPFHVNSKEGYFEQTEVRLVLSFLR 614
Query: 662 TTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHI--DKISTIRKCSFISAACDIFGAKISG 719
T D P + ++ L+ + VI D+++ IR S D F I
Sbjct: 615 TV-----DNPLQDIYLVGLM------RSVIYQFTEDELARIRVT---SPNDDYFYQSIQH 660
Query: 720 TFKRSQ-----LTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDF 774
K + + + + L L+ + P V ++ + Y R V+ +
Sbjct: 661 YLKTKEADPDLVAKLQDFLKDLKFYQEFSLEHP--------VYQLIDRFY--NNRLVIQY 710
Query: 775 DGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISE 834
G + + R+ L L +F ++ F +G ++ FID + +
Sbjct: 711 FSGMIGGKGR--RANLYGLYNKAIEFENSSF-------------RGLFQFIR-FIDELID 754
Query: 835 RETEHFRTQR--HDNENSVTLTTIHQSKGLEWDIVFVA-------KANETEIPLVHEFNG 885
R + F + N++ V + TIH SKGLE+ V + +++ + ++++ G
Sbjct: 755 RGKD-FGEENVVGPNDDVVRMMTIHASKGLEFPFVIYSGLSKSFNRSDLYKPVILNQKYG 813
Query: 886 -----------------------AVNEKGTSVEEERRLLYVAMTRARKKLFIL 915
A+ EK + EE RL+YVA+TRA+++LF++
Sbjct: 814 MGMTYFDVEKDFAFPSLASVTLRAITEKEM-ISEEMRLMYVALTRAKEQLFLV 865
Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 30/102 (29%)
Query: 265 LIVAGPGSGKG---------------ISPSNILAMTFTTAAASEMRDRIGSIVGKATAKE 309
L+ A GSGK I +L +TFT +A EM+ R+ + KA+ ++
Sbjct: 27 LVAAAAGSGKTAVLVERIIQRILRDEIDVDRLLVVTFTNLSAREMKHRVEKRIQKASLED 86
Query: 310 LT---------------ISTFHSFSLQLCRSHAEKLERTSEF 336
+ IST HSF L+L + H + L+ F
Sbjct: 87 PSNTHLKNQRVKIHQAQISTLHSFCLKLIQQHYDVLDIDPNF 128
>sp|Q8DPR6|ADDA_STRR6 ATP-dependent helicase/nuclease subunit A OS=Streptococcus
pneumoniae (strain ATCC BAA-255 / R6) GN=addA PE=3 SV=1
Length = 1216
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 97/170 (57%), Gaps = 12/170 (7%)
Query: 435 ILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSL 494
+E Y R NA ++ D+ ++++L FP+V + YQ+ + ++VDE+QDT+ +Q +
Sbjct: 372 FVEAYRQRKRQENAFEFADISHYTIEILENFPQVRESYQERFHEVMVDEYQDTNHIQERM 431
Query: 495 LQILAS-HNRITIVGDDDQSIFSFNGADISGF-DSFRKDFLNYKEIRLT---RNYRSTRC 549
L++L++ HNR +VGD QSI+ F AD F + F++ N +E RL N+RS+
Sbjct: 432 LELLSNGHNRF-MVGDIKQSIYRFRQADPQIFNEKFQRYAQNPQEGRLIILKENFRSSSE 490
Query: 550 IVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII---KECHNEDAQCAFII 596
++ A + + + + + ++ + DN H +++ K N D + AF++
Sbjct: 491 VLSATNDVFERLMDQ-EVGEINYDNKH--QLVFANTKLTPNPDNKAAFLL 537
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 41/109 (37%)
Query: 848 ENSVTLTTIHQSKGLEWDIVFVAKANE--------TEIPLVHEFN-----------GAV- 887
+++V L TIH+SKGLE+ VF+ ++ +E+ L + GAV
Sbjct: 789 KDAVELMTIHKSKGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVE 848
Query: 888 ------------------NEKG---TSVEEERRLLYVAMTRARKKLFIL 915
NE+ S E+ RLLYVAMTRA KKL+++
Sbjct: 849 DHYPKTIKLSIPSLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLV 897
>sp|Q97QP9|ADDA_STRPN ATP-dependent helicase/nuclease subunit A OS=Streptococcus
pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
GN=addA PE=3 SV=1
Length = 1216
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 97/170 (57%), Gaps = 12/170 (7%)
Query: 435 ILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSL 494
+E Y R NA ++ D+ ++++L FP+V + YQ+ + ++VDE+QDT+ +Q +
Sbjct: 372 FVEAYRQRKRQENAFEFADISHYTIEILENFPQVRESYQERFHEVMVDEYQDTNHIQERM 431
Query: 495 LQILAS-HNRITIVGDDDQSIFSFNGADISGF-DSFRKDFLNYKEIRLT---RNYRSTRC 549
L++L++ HNR +VGD QSI+ F AD F + F++ N +E RL N+RS+
Sbjct: 432 LELLSNGHNRF-MVGDIKQSIYRFRQADPQIFNEKFQRYAQNPQEGRLIILKENFRSSSE 490
Query: 550 IVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII---KECHNEDAQCAFII 596
++ A + + + + + ++ + DN H +++ K N D + AF++
Sbjct: 491 VLSATNDVFERLMDQ-EVGEINYDNKH--QLVFANTKLTPNPDNKAAFLL 537
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 41/109 (37%)
Query: 848 ENSVTLTTIHQSKGLEWDIVFVAKANE--------TEIPLVHEFN-----------GAV- 887
+++V L TIH+SKGLE+ VF+ ++ +E+ L + GAV
Sbjct: 789 KDAVELMTIHKSKGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVE 848
Query: 888 ------------------NEKG---TSVEEERRLLYVAMTRARKKLFIL 915
NE+ S E+ RLLYVAMTRA KKL+++
Sbjct: 849 DHYPKTIKLSIPSLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLV 897
>sp|Q04KF8|ADDA_STRP2 ATP-dependent helicase/nuclease subunit A OS=Streptococcus
pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=addA
PE=3 SV=1
Length = 1216
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 97/170 (57%), Gaps = 12/170 (7%)
Query: 435 ILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSL 494
+E Y R NA ++ D+ ++++L FP+V + YQ+ + ++VDE+QDT+ +Q +
Sbjct: 372 FVEAYRQRKRQENAFEFADISHYTIEILENFPQVRESYQERFHEVMVDEYQDTNHIQERM 431
Query: 495 LQILAS-HNRITIVGDDDQSIFSFNGADISGF-DSFRKDFLNYKEIRLT---RNYRSTRC 549
L++L++ HNR +VGD QSI+ F AD F + F++ N +E RL N+RS+
Sbjct: 432 LELLSNGHNRF-MVGDIKQSIYRFRQADPQIFNEKFQRYAQNPQEGRLIILKENFRSSSE 490
Query: 550 IVEAASSLIQHNVKRCQLKNVQTDNSHGSKIII---KECHNEDAQCAFII 596
++ A + + + + + ++ + DN H +++ K N D + AF++
Sbjct: 491 VLSATNDVFERLMDQ-EVGEINYDNKH--QLVFANTKLTPNPDNKAAFLL 537
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 41/109 (37%)
Query: 848 ENSVTLTTIHQSKGLEWDIVFVAKANE--------TEIPLVHEFN-----------GAV- 887
+++V L TIH+SKGLE+ VF+ ++ +E+ L + GAV
Sbjct: 789 KDAVELMTIHKSKGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVE 848
Query: 888 ------------------NEKG---TSVEEERRLLYVAMTRARKKLFIL 915
NE+ S E+ RLLYVAMTRA KKL+++
Sbjct: 849 DHYPKTIKLSIPSLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLV 897
>sp|Q5HQJ4|ADDA_STAEQ ATP-dependent helicase/nuclease subunit A OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=addA PE=3
SV=1
Length = 1218
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 129/566 (22%), Positives = 241/566 (42%), Gaps = 121/566 (21%)
Query: 430 EIGAAILENYNGILRSCNALDYHDLISCSVKLLS----TFPEVFQEYQDSWKAIIVDEFQ 485
+I +++++ RS N LD+ D ++++L+ + + + Y++ +K I+VDE+Q
Sbjct: 344 QIVQDVIQSFGVQKRSRNILDFSDYEHFALRILTNEDGSPSRIAETYREHFKEILVDEYQ 403
Query: 486 DTSAMQYSLLQILAS---HN-RITIVGDDDQSIFSFNGADISGFDSFRKDFLNYK----- 536
DT+ +Q +L + + H+ + +VGD QSI+ F AD S F F +
Sbjct: 404 DTNRVQEKILSCIKTGEEHDGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFSSSGNESGL 463
Query: 537 EIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDN-------------SHGSKI-II 582
I L++N+RS + ++ + L +H + Q+ + D+ SH ++ +
Sbjct: 464 RIDLSQNFRSRQEVLSTTNYLFKHMMDE-QVGEISYDDAAQLYFGAPYDEVSHPVQLRAL 522
Query: 583 KECHNEDA-------QCAFIIDK---ILEHAS-----NGPASICSYGSIAILYRRQVSGK 627
E +E++ + +I+++ I+ H + G +Y I IL R +
Sbjct: 523 VEASSENSDLTGSEQEANYIVEQVKDIINHQNVYDMKTGQYRKATYKDIVILERSFGQAR 582
Query: 628 VFQTAFRERKIPFNIHGV-AFYRKKVVRAIIAMLRTTLPGCDD----GPYRRVFKAFLLL 682
Q AF+ IPF+++ ++ + VR +++ LRT D G R V F
Sbjct: 583 NLQQAFKNNDIPFHVNSKEGYFEQTEVRLVLSFLRTIDNPLQDIYLVGLMRSVIYQFTEE 642
Query: 683 EKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKISGTFKRS-QLTQGRKVLLTLEMISK 741
E E + V H D K I D +++ R Q Q + + + +
Sbjct: 643 ELAEIRVVSPHDDYFYQSIKNYMIDEKAD---SRLVDKLNRFIQDIQKYQNYSQSQPVYQ 699
Query: 742 LVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFL 801
L+ + + VI + ++ GGK R+ L L +F
Sbjct: 700 LIDKFYNDHFVIQYFSGLI---------------GGK------GRRANLYGLFNKAVEFE 738
Query: 802 STKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQR--HDNENSVTLTTIHQS 859
++ F +G ++ FID + +R+ + F + N+N V + TIH S
Sbjct: 739 NSSF-------------RGLFQFIR-FIDELIDRKKD-FGEENVVGPNDNVVRMMTIHSS 783
Query: 860 KGLEWDIVFVA----KANETEI--PLV-----------HEFNG-------------AVNE 889
KGLE+ V + K N+ ++ P++ + N A+NE
Sbjct: 784 KGLEFPFVIYSGLSKKFNKGDLNAPVILNQQYGLGMDYFDVNKDMAFPSLASVAYRAINE 843
Query: 890 KGTSVEEERRLLYVAMTRARKKLFIL 915
K + EE RL+YVA+TRA+++L ++
Sbjct: 844 KEL-ISEEMRLIYVALTRAKEQLILV 868
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 30/103 (29%)
Query: 264 LLIVAGPGSGK---------------GISPSNILAMTFTTAAASEMRDRIGSIVGKATAK 308
+L+ A GSGK + +L +TFT +A EM+ R+ + +A+ K
Sbjct: 26 ILVAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSAREMKHRVDKRIQEASFK 85
Query: 309 ---------------ELTISTFHSFSLQLCRSHAEKLERTSEF 336
+ IST HSF L+L + H + L+ F
Sbjct: 86 DPNNEHLKNQRIKIHQAQISTLHSFCLKLIQQHYDVLDIDPHF 128
>sp|B2IPX3|ADDA_STRPS ATP-dependent helicase/nuclease subunit A OS=Streptococcus
pneumoniae (strain CGSP14) GN=addA PE=3 SV=1
Length = 1216
Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 86/147 (58%), Gaps = 7/147 (4%)
Query: 435 ILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSL 494
+E Y R NA ++ D+ ++++L FP+V + YQ+ + ++VDE+QDT+ +Q +
Sbjct: 372 FVEAYRQRKRQENAFEFADISHYTIEILENFPQVRESYQERFHEVMVDEYQDTNHIQERM 431
Query: 495 LQILAS-HNRITIVGDDDQSIFSFNGADISGF-DSFRKDFLNYKE---IRLTRNYRSTRC 549
L++L++ HNR +VGD QSI+ F AD F + F++ N +E I L N+RS+
Sbjct: 432 LELLSNGHNRF-MVGDIKQSIYRFRQADPQIFNEKFQRYAQNPQEGKLILLKENFRSSSE 490
Query: 550 IVEAASSLIQHNVKRCQLKNVQTDNSH 576
++ A + + + + + ++ + DN H
Sbjct: 491 VLSATNDVFERLMDQ-EVGEINYDNKH 516
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 41/109 (37%)
Query: 848 ENSVTLTTIHQSKGLEWDIVFVAKANE--------TEIPLVHEFN-----------GAV- 887
+++V L TIH+SKGLE+ VF+ ++ +E+ L + GAV
Sbjct: 789 KDAVELMTIHKSKGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVE 848
Query: 888 ------------------NEKG---TSVEEERRLLYVAMTRARKKLFIL 915
NE+ S E+ RLLYVAMTRA KKL+++
Sbjct: 849 DHYPKTIKLSIPSLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLV 897
>sp|B1IBR6|ADDA_STRPI ATP-dependent helicase/nuclease subunit A OS=Streptococcus
pneumoniae (strain Hungary19A-6) GN=addA PE=3 SV=1
Length = 1216
Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 86/147 (58%), Gaps = 7/147 (4%)
Query: 435 ILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSL 494
+E Y R NA ++ D+ ++++L FP+V + YQ+ + ++VDE+QDT+ +Q +
Sbjct: 372 FVEAYRQRKRQENAFEFADISHYTIEILENFPQVRESYQERFHEVMVDEYQDTNHIQERM 431
Query: 495 LQILAS-HNRITIVGDDDQSIFSFNGADISGF-DSFRKDFLNYKE---IRLTRNYRSTRC 549
L++L++ HNR +VGD QSI+ F AD F + F++ N +E I L N+RS+
Sbjct: 432 LELLSNGHNRF-MVGDIKQSIYRFRQADPQIFNEKFQRYAQNPQEGKLILLKENFRSSSE 490
Query: 550 IVEAASSLIQHNVKRCQLKNVQTDNSH 576
++ A + + + + + ++ + DN H
Sbjct: 491 VLSATNDVFERLMDQ-EVGEINYDNKH 516
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 41/109 (37%)
Query: 848 ENSVTLTTIHQSKGLEWDIVFVAKANE--------TEIPLVHEFN-----------GAV- 887
+++V L TIH+SKGLE+ VF+ ++ +E+ L + GAV
Sbjct: 789 KDAVELMTIHKSKGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVE 848
Query: 888 ------------------NEKG---TSVEEERRLLYVAMTRARKKLFIL 915
NE+ S E+ RLLYVAMTRA KKL+++
Sbjct: 849 DHYPKTIKLSIPSLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLV 897
>sp|Q49WA6|ADDA_STAS1 ATP-dependent helicase/nuclease subunit A OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=addA PE=3 SV=1
Length = 1219
Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 123/562 (21%), Positives = 234/562 (41%), Gaps = 115/562 (20%)
Query: 430 EIGAAILENYNGILRSCNALDYHDLISCSVKLL----STFPEVFQEYQDSWKAIIVDEFQ 485
++ A ++E +N RS N LD+ D ++++L E+ Y+ ++ I+VDE+Q
Sbjct: 347 QVTADVIEQFNQKKRSRNLLDFSDYEHFALRILMDSNGNPSEIADMYRKQFEEILVDEYQ 406
Query: 486 DTSAMQYSLLQILA----SHNRITIVGDDDQSIFSFNGAD----ISGFDSFRKDFLNYK- 536
DT+ +Q ++ + + + +VGD QSI+ F AD I ++ F D +
Sbjct: 407 DTNRVQEKIIACIKRGDEADGNLFMVGDVKQSIYKFRQADPSLFIGKYNRFTLDGSEHGM 466
Query: 537 EIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS---HGS-----------KIII 582
I L++N+RS ++ + L +H + + V D + +G+ ++I
Sbjct: 467 RIDLSQNFRSREEVLTTTNYLFKHMMDEAVGEIVYDDAAQLYYGAPFDHKPHDVQLNMLI 526
Query: 583 KECHNE----DAQCAFIIDKILEHASNGPASIC--------SYGSIAILYRRQVSGKVFQ 630
++ ++ + + +I+ ++ + S SY I IL R + Q
Sbjct: 527 EDASSDLNGSEQEAEYIVQQVEKIMSQHEIYDIKTEQYRKPSYKDIVILERSYGQARKIQ 586
Query: 631 TAFRERKIPFNIHGV-AFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKR 689
AF++ IPF+++ ++ + V+ I++ LRT D P + ++ L+ +
Sbjct: 587 QAFKDHNIPFHVNSKEGYFEQTEVQLILSFLRTI-----DNPLQDIYLVGLM------RS 635
Query: 690 VIDHI--DKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREP 747
VI D++S IR S D F I +K++ L + + +
Sbjct: 636 VIYQFTEDELSNIR---VFSPNDDYFYQSIKHYMAND--VANKKLVAKLASFLEDIEQYQ 690
Query: 748 SIS---AVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTK 804
S V + Y+++ + + GGK R+ L L +F ++
Sbjct: 691 DYSQSHPVYQLIDKFYNDHYVIQYFSGI--IGGK------GRRANLYGLFNKAVEFENSS 742
Query: 805 FTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQR--HDNENSVTLTTIHQSKGL 862
F +G ++ FID + ER + F + N++ V + TIH SKGL
Sbjct: 743 F-------------RGLYQFIR-FIDELIERGKD-FGEENIVGPNDDVVRMMTIHSSKGL 787
Query: 863 EWDIVFVAKAN-------------------------ETEIPLVHEFNGAVNEKGTS---- 893
E+ V + + + E L + +V K +
Sbjct: 788 EFPFVIYSGLSRKFRRDDLHRPVILNQSYGLGMAYYDVESNLSYPSLSSVTYKAIAEKEM 847
Query: 894 VEEERRLLYVAMTRARKKLFIL 915
V EE RL+YVA+TRA+++LF++
Sbjct: 848 VSEEMRLIYVALTRAKEQLFLI 869
Score = 40.8 bits (94), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 30/103 (29%)
Query: 264 LLIVAGPGSGKG---------------ISPSNILAMTFTTAAASEMRDRIGSIVGKATAK 308
+L+ A GSGK I +L +TFT A+A EM+ R+ + +A+ +
Sbjct: 29 ILVAAAAGSGKTAVLVERIIQRIIRDEIDVDKLLVVTFTNASAREMKQRVDQRIQEASIE 88
Query: 309 ---------------ELTISTFHSFSLQLCRSHAEKLERTSEF 336
+ IST HSF L+L + H + L+ F
Sbjct: 89 NPDNAHLKNQRVKIHQAQISTLHSFCLKLIQQHYDVLDIDPNF 131
>sp|B8ZQ32|ADDA_STRPJ ATP-dependent helicase/nuclease subunit A OS=Streptococcus
pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=addA
PE=3 SV=1
Length = 1216
Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 86/147 (58%), Gaps = 7/147 (4%)
Query: 435 ILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKAIIVDEFQDTSAMQYSL 494
+E Y R NA ++ D+ ++++L FP+V + YQ+ + ++VDE+QDT+ +Q +
Sbjct: 372 FVEAYRQRKRQENAFEFADISHYTIEILENFPQVRESYQERFHEVMVDEYQDTNHIQERM 431
Query: 495 LQILAS-HNRITIVGDDDQSIFSFNGADISGF-DSFRKDFLNYKE---IRLTRNYRSTRC 549
L++L++ HNR +VGD QSI+ F AD F + F++ N +E I L N+RS+
Sbjct: 432 LELLSNGHNRF-MVGDIKQSIYRFRQADPQIFNEKFQRYAQNPQEGKLILLKANFRSSSE 490
Query: 550 IVEAASSLIQHNVKRCQLKNVQTDNSH 576
++ A + + + + + ++ + DN H
Sbjct: 491 VLSATNDVFERLMDQ-EVGEINYDNKH 516
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 41/109 (37%)
Query: 848 ENSVTLTTIHQSKGLEWDIVFVAKANE--------TEIPLVHEFN-----------GAV- 887
+++V L TIH+SKGLE+ VF+ ++ +E+ L + GAV
Sbjct: 789 KDAVELMTIHKSKGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVE 848
Query: 888 ------------------NEKG---TSVEEERRLLYVAMTRARKKLFIL 915
NE+ S E+ RLLYVAMTRA KKL+++
Sbjct: 849 DHYPKTIKLSIPSLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLV 897
>sp|Q7A6H4|ADDA_STAAN ATP-dependent helicase/nuclease subunit A OS=Staphylococcus aureus
(strain N315) GN=addA PE=1 SV=1
Length = 1217
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 89/368 (24%), Positives = 165/368 (44%), Gaps = 67/368 (18%)
Query: 373 TDGHFGY----MRASLFMMNAMLFFSMSSFKLCQYNK------------FERDGMDVAKA 416
TD FG + A + N M+ ++ KL QY K F R+ D+ KA
Sbjct: 274 TDHEFGARLPNVTAKIKEANEMMVDALEDAKL-QYKKYKSLIDKVKNDYFSREADDL-KA 331
Query: 417 SGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLS----TFPEVFQEY 472
+ A K I ++ +N RS N LD+ D ++++L+ + E+ + Y
Sbjct: 332 DMQQLAPRVKYLARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESY 391
Query: 473 QDSWKAIIVDEFQDTSAMQYSLLQILAS---HN-RITIVGDDDQSIFSFNGADISGFDSF 528
+ ++ I+VDE+QDT+ +Q +L + + HN + +VGD QSI+ F AD S F
Sbjct: 392 RQHFQEILVDEYQDTNRVQEKILSCIKTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEK 451
Query: 529 RKDFL-----NYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNS----HGS- 578
+ F + I L++N+RS + ++ + + +H + Q+ V+ D + +G+
Sbjct: 452 YQRFTIDGDGTGRRIDLSQNFRSRKEVLSTTNYIFKHMMDE-QVGEVKYDEAAQLYYGAP 510
Query: 579 ----------KIIIK------ECHNEDAQCAFIIDK---ILEH-----ASNGPASICSYG 614
K++++ + + + FI+++ ILEH G +Y
Sbjct: 511 YDESDHPVNLKVLVEADQEHSDLTGSEQEAHFIVEQVKDILEHQKVYDMKTGSYRSATYK 570
Query: 615 SIAILYRRQVSGKVFQTAFRERKIPFNIHG-VAFYRKKVVRAIIAMLRTTLPGCDDGPYR 673
I IL R + Q AF+ IPF+++ ++ + VR +++ LR D P +
Sbjct: 571 DIVILERSFGQARNLQQAFKNEDIPFHVNSREGYFEQTEVRLVLSFLRAI-----DNPLQ 625
Query: 674 RVFKAFLL 681
++ L+
Sbjct: 626 DIYLVGLM 633
Score = 40.8 bits (94), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 30/97 (30%)
Query: 264 LLIVAGPGSGK---------------GISPSNILAMTFTTAAASEMRDRI------GSIV 302
+L+ A GSGK GI +L +TFT +A EM+ R+ SI
Sbjct: 27 VLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRVDQRIQEASIA 86
Query: 303 GKATA---------KELTISTFHSFSLQLCRSHAEKL 330
A A + IST HSF L+L + H + L
Sbjct: 87 DPANAHLKNQRIKIHQAQISTLHSFCLKLIQQHYDVL 123
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 397,253,338
Number of Sequences: 539616
Number of extensions: 16273407
Number of successful extensions: 45671
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 94
Number of HSP's that attempted gapping in prelim test: 44560
Number of HSP's gapped (non-prelim): 828
length of query: 1148
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1019
effective length of database: 121,958,995
effective search space: 124276215905
effective search space used: 124276215905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)