Query 001127
Match_columns 1148
No_of_seqs 479 out of 2395
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 12:25:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u4q_B ATP-dependent helicase/ 100.0 6.5E-77 2.2E-81 788.9 61.2 732 264-1069 4-895 (1166)
2 1pjr_A PCRA; DNA repair, DNA r 100.0 4.2E-73 1.4E-77 716.6 50.1 612 243-940 7-646 (724)
3 1uaa_A REP helicase, protein ( 100.0 1.8E-71 6E-76 699.0 53.6 610 247-939 2-637 (673)
4 3lfu_A DNA helicase II; SF1 he 100.0 4.9E-71 1.7E-75 693.4 54.2 614 242-940 4-641 (647)
5 3u4q_A ATP-dependent helicase/ 100.0 8.5E-63 2.9E-67 653.6 57.8 638 245-922 8-888 (1232)
6 1w36_B RECB, exodeoxyribonucle 100.0 5.2E-53 1.8E-57 558.6 51.4 423 431-919 331-820 (1180)
7 1w36_C RECC, exodeoxyribonucle 100.0 3.8E-31 1.3E-35 346.9 53.9 331 576-940 370-756 (1122)
8 4b3f_X DNA-binding protein smu 99.9 9.4E-27 3.2E-31 290.5 15.2 151 474-630 365-547 (646)
9 2xzl_A ATP-dependent helicase 99.9 7.9E-25 2.7E-29 276.5 17.2 156 473-635 515-697 (802)
10 3upu_A ATP-dependent DNA helic 99.9 1.4E-24 4.7E-29 260.2 17.8 150 475-639 128-278 (459)
11 2wjy_A Regulator of nonsense t 99.9 9.6E-24 3.3E-28 266.2 19.9 153 474-634 514-694 (800)
12 2gk6_A Regulator of nonsense t 99.9 8E-23 2.7E-27 253.5 20.7 154 474-635 338-519 (624)
13 3dmn_A Putative DNA helicase; 99.8 1.2E-20 4E-25 195.6 14.9 88 541-641 2-89 (174)
14 3e1s_A Exodeoxyribonuclease V, 99.7 6.4E-17 2.2E-21 197.6 14.3 134 475-634 279-419 (574)
15 1w36_D RECD, exodeoxyribonucle 99.5 6.2E-13 2.1E-17 164.0 21.4 86 475-560 262-377 (608)
16 3vkw_A Replicase large subunit 98.7 6.5E-08 2.2E-12 112.6 13.6 82 475-557 234-315 (446)
17 3dkp_A Probable ATP-dependent 94.5 0.069 2.4E-06 57.1 8.3 57 246-302 50-122 (245)
18 1qde_A EIF4A, translation init 94.4 0.1 3.5E-06 54.8 9.0 59 245-303 34-107 (224)
19 1vec_A ATP-dependent RNA helic 94.1 0.11 3.7E-06 53.7 8.3 58 246-303 24-96 (206)
20 3ber_A Probable ATP-dependent 93.9 0.16 5.5E-06 54.6 9.4 58 246-303 64-136 (249)
21 3bor_A Human initiation factor 93.6 0.094 3.2E-06 55.9 7.0 58 245-302 50-122 (237)
22 1hv8_A Putative ATP-dependent 93.5 0.13 4.5E-06 58.0 8.5 60 245-304 26-100 (367)
23 2gxq_A Heat resistant RNA depe 93.3 0.1 3.4E-06 54.1 6.5 57 246-302 22-96 (207)
24 3b6e_A Interferon-induced heli 93.1 0.12 4.1E-06 53.7 6.7 56 247-302 33-107 (216)
25 3fe2_A Probable ATP-dependent 93.1 0.2 6.8E-06 53.5 8.5 57 246-302 50-126 (242)
26 2pl3_A Probable ATP-dependent 93.0 0.21 7.3E-06 52.9 8.5 57 246-302 46-121 (236)
27 1t6n_A Probable ATP-dependent 92.8 0.19 6.6E-06 52.5 7.7 57 246-302 35-106 (220)
28 3iuy_A Probable ATP-dependent 92.7 0.13 4.4E-06 54.3 6.2 56 246-301 41-117 (228)
29 2fz4_A DNA repair protein RAD2 92.7 0.19 6.4E-06 53.7 7.5 54 247-300 93-155 (237)
30 2oxc_A Probable ATP-dependent 92.4 0.22 7.4E-06 52.7 7.6 57 246-302 45-116 (230)
31 1rif_A DAR protein, DNA helica 92.3 0.09 3.1E-06 57.7 4.5 56 247-302 113-181 (282)
32 3eiq_A Eukaryotic initiation f 92.2 0.33 1.1E-05 55.8 9.5 59 245-303 60-133 (414)
33 3pey_A ATP-dependent RNA helic 92.1 0.26 8.9E-06 56.1 8.4 58 245-302 25-99 (395)
34 1wrb_A DJVLGB; RNA helicase, D 92.1 0.35 1.2E-05 51.8 8.9 58 246-303 44-125 (253)
35 1q0u_A Bstdead; DEAD protein, 91.7 0.11 3.9E-06 54.4 4.3 58 246-303 25-97 (219)
36 3oiy_A Reverse gyrase helicase 91.5 0.15 5.2E-06 59.0 5.6 56 247-302 21-88 (414)
37 1s2m_A Putative ATP-dependent 91.4 0.34 1.2E-05 55.6 8.3 58 246-303 42-114 (400)
38 3fmo_B ATP-dependent RNA helic 90.8 0.36 1.2E-05 53.4 7.5 58 245-302 112-186 (300)
39 1xti_A Probable ATP-dependent 90.7 0.44 1.5E-05 54.3 8.3 58 246-303 29-101 (391)
40 3vkw_A Replicase large subunit 90.6 0.11 3.9E-06 60.4 3.2 57 263-320 163-225 (446)
41 2zpa_A Uncharacterized protein 90.6 1.1 3.6E-05 54.9 11.7 78 475-559 255-335 (671)
42 3i5x_A ATP-dependent RNA helic 90.6 0.74 2.5E-05 55.6 10.5 97 246-343 93-236 (563)
43 3sqw_A ATP-dependent RNA helic 90.3 0.81 2.8E-05 55.6 10.5 97 246-343 42-185 (579)
44 2z0m_A 337AA long hypothetical 90.0 0.19 6.5E-06 56.0 4.3 57 246-302 15-80 (337)
45 3ly5_A ATP-dependent RNA helic 89.8 0.18 6.2E-06 54.7 3.7 58 246-303 75-151 (262)
46 1fuu_A Yeast initiation factor 89.7 0.3 1E-05 55.7 5.7 59 245-303 41-114 (394)
47 3fht_A ATP-dependent RNA helic 89.7 0.41 1.4E-05 55.0 6.9 58 245-302 45-119 (412)
48 2oca_A DAR protein, ATP-depend 89.6 0.31 1E-05 58.2 5.9 55 247-301 113-180 (510)
49 2db3_A ATP-dependent RNA helic 89.4 0.77 2.6E-05 53.6 9.1 58 246-303 77-154 (434)
50 2j0s_A ATP-dependent RNA helic 89.2 0.39 1.3E-05 55.2 6.3 57 246-302 58-129 (410)
51 2i4i_A ATP-dependent RNA helic 89.1 0.71 2.4E-05 53.1 8.5 59 245-303 35-126 (417)
52 3fmp_B ATP-dependent RNA helic 88.5 0.54 1.8E-05 55.6 7.0 58 245-302 112-186 (479)
53 3l9o_A ATP-dependent RNA helic 88.5 0.57 1.9E-05 61.3 7.7 80 245-324 182-283 (1108)
54 1wp9_A ATP-dependent RNA helic 88.5 0.44 1.5E-05 55.6 6.2 57 247-303 9-77 (494)
55 3llm_A ATP-dependent RNA helic 88.4 0.42 1.5E-05 50.7 5.4 57 247-303 61-134 (235)
56 2fwr_A DNA repair protein RAD2 87.4 0.56 1.9E-05 55.3 6.1 54 247-300 93-155 (472)
57 3fho_A ATP-dependent RNA helic 87.3 0.54 1.8E-05 56.2 6.0 57 247-303 141-214 (508)
58 4f92_B U5 small nuclear ribonu 86.7 0.88 3E-05 62.2 8.1 59 245-303 924-997 (1724)
59 2va8_A SSO2462, SKI2-type heli 86.7 0.45 1.6E-05 59.4 5.0 54 246-299 29-96 (715)
60 3tbk_A RIG-I helicase domain; 85.1 0.82 2.8E-05 54.7 6.0 57 247-303 4-77 (555)
61 4a2p_A RIG-I, retinoic acid in 85.1 0.83 2.8E-05 54.7 6.1 57 247-303 7-80 (556)
62 1xx6_A Thymidine kinase; NESG, 84.4 0.85 2.9E-05 46.9 4.9 34 475-508 81-115 (191)
63 2xgj_A ATP-dependent RNA helic 84.4 1.1 3.6E-05 58.2 6.9 77 247-323 86-184 (1010)
64 4a4z_A Antiviral helicase SKI2 84.1 1.1 3.8E-05 58.0 6.9 77 247-323 39-139 (997)
65 4ddu_A Reverse gyrase; topoiso 84.0 0.83 2.8E-05 59.8 5.7 93 247-343 78-206 (1104)
66 2j9r_A Thymidine kinase; TK1, 82.0 0.82 2.8E-05 47.8 3.6 34 475-508 101-135 (214)
67 1gm5_A RECG; helicase, replica 80.4 0.46 1.6E-05 59.7 1.2 57 247-303 368-442 (780)
68 3h4r_A Exodeoxyribonuclease 8; 80.2 0.99 3.4E-05 48.9 3.6 40 989-1028 12-56 (265)
69 4f92_B U5 small nuclear ribonu 80.2 2.2 7.4E-05 58.4 7.7 74 245-318 77-192 (1724)
70 4a2q_A RIG-I, retinoic acid in 79.9 1.6 5.6E-05 55.1 6.1 59 245-303 246-321 (797)
71 2b8t_A Thymidine kinase; deoxy 78.6 1.5 5E-05 46.3 4.2 35 475-509 89-124 (223)
72 2zj8_A DNA helicase, putative 78.5 0.62 2.1E-05 58.3 1.5 55 246-300 22-90 (720)
73 2p6r_A Afuhel308 helicase; pro 77.7 0.59 2E-05 58.3 1.0 54 246-299 24-89 (702)
74 2v1x_A ATP-dependent DNA helic 77.7 1.6 5.5E-05 53.1 4.9 57 245-301 42-107 (591)
75 3e2i_A Thymidine kinase; Zn-bi 76.0 2 6.7E-05 44.9 4.2 35 474-508 100-135 (219)
76 4gl2_A Interferon-induced heli 75.7 1.2 4E-05 55.4 2.9 57 247-303 7-82 (699)
77 3l0a_A Putative exonuclease; R 75.1 1.4 4.7E-05 47.7 2.8 41 988-1028 17-68 (266)
78 4a2w_A RIG-I, retinoic acid in 73.2 2.9 0.0001 53.7 5.8 59 245-303 246-321 (936)
79 2orw_A Thymidine kinase; TMTK, 72.2 2 6.7E-05 43.8 3.1 35 475-509 76-111 (184)
80 2ykg_A Probable ATP-dependent 72.1 4.7 0.00016 49.8 7.1 58 246-303 12-86 (696)
81 2eyq_A TRCF, transcription-rep 71.2 2.2 7.6E-05 56.1 4.0 57 247-303 603-677 (1151)
82 2z83_A Helicase/nucleoside tri 70.3 2 6.8E-05 50.5 3.0 41 259-299 19-71 (459)
83 1c9k_A COBU, adenosylcobinamid 67.7 2 7E-05 43.6 2.0 37 264-301 2-46 (180)
84 2w00_A HSDR, R.ECOR124I; ATP-b 67.2 3.9 0.00013 52.9 4.9 75 247-321 271-389 (1038)
85 1gku_B Reverse gyrase, TOP-RG; 65.5 4.4 0.00015 52.8 5.0 54 248-302 58-123 (1054)
86 1w4r_A Thymidine kinase; type 64.6 3.9 0.00013 42.0 3.4 40 475-515 91-134 (195)
87 1oyw_A RECQ helicase, ATP-depe 64.4 2 7E-05 51.3 1.5 55 246-300 24-87 (523)
88 4a15_A XPD helicase, ATP-depen 63.4 3 0.0001 51.0 2.7 54 249-302 5-75 (620)
89 2v6i_A RNA helicase; membrane, 63.4 4.1 0.00014 47.4 3.8 39 261-299 2-52 (431)
90 1z3i_X Similar to RAD54-like; 62.7 29 0.00099 42.4 11.4 40 474-513 191-233 (644)
91 3h1t_A Type I site-specific re 62.4 4.5 0.00015 49.0 4.0 49 247-295 178-252 (590)
92 1tf5_A Preprotein translocase 61.8 13 0.00045 46.4 8.0 97 247-344 83-214 (844)
93 2vl7_A XPD; helicase, unknown 60.8 3.6 0.00012 49.4 2.8 54 247-300 7-73 (540)
94 3n70_A Transport activator; si 60.3 4 0.00014 39.4 2.5 16 259-274 22-37 (145)
95 1yks_A Genome polyprotein [con 60.1 4.3 0.00015 47.4 3.1 40 260-299 7-58 (440)
96 3o8b_A HCV NS3 protease/helica 59.8 5.7 0.00019 48.7 4.2 43 261-303 232-282 (666)
97 3crv_A XPD/RAD3 related DNA he 56.1 4.6 0.00016 48.5 2.6 54 248-301 4-70 (551)
98 2jlq_A Serine protease subunit 55.7 6.3 0.00021 46.1 3.5 39 261-299 19-69 (451)
99 2xau_A PRE-mRNA-splicing facto 55.6 5.9 0.0002 49.7 3.5 54 249-302 95-164 (773)
100 1nkt_A Preprotein translocase 53.8 23 0.00079 44.4 8.2 97 247-344 111-242 (922)
101 3co5_A Putative two-component 53.3 6.2 0.00021 38.0 2.5 16 259-274 25-40 (143)
102 2wv9_A Flavivirin protease NS2 53.1 7 0.00024 48.2 3.5 41 260-300 240-292 (673)
103 2whx_A Serine protease/ntpase/ 51.5 7 0.00024 47.7 3.1 40 260-299 185-236 (618)
104 2orv_A Thymidine kinase; TP4A 50.7 11 0.00037 39.8 4.0 33 475-508 90-123 (234)
105 3sr0_A Adenylate kinase; phosp 48.1 5 0.00017 41.6 0.9 12 264-275 3-14 (206)
106 3umf_A Adenylate kinase; rossm 47.2 5.4 0.00019 41.7 1.0 13 263-275 31-43 (217)
107 1jbk_A CLPB protein; beta barr 46.7 7.4 0.00025 38.4 1.9 15 260-274 42-56 (195)
108 3te6_A Regulatory protein SIR3 45.7 5.1 0.00017 44.6 0.5 20 255-274 39-58 (318)
109 3ec2_A DNA replication protein 45.5 5.1 0.00017 40.1 0.5 35 475-509 100-141 (180)
110 2w58_A DNAI, primosome compone 44.1 8.8 0.0003 39.0 2.1 13 262-274 55-67 (202)
111 3uie_A Adenylyl-sulfate kinase 43.5 9.7 0.00033 38.8 2.3 31 244-274 8-38 (200)
112 2fsf_A Preprotein translocase 43.5 35 0.0012 42.6 7.5 97 246-343 73-204 (853)
113 2bjv_A PSP operon transcriptio 43.2 20 0.00068 38.1 4.8 16 259-274 27-42 (265)
114 2kjq_A DNAA-related protein; s 43.0 12 0.00042 36.3 2.8 30 246-275 21-50 (149)
115 3bos_A Putative DNA replicatio 42.9 8.6 0.00029 39.8 1.8 16 260-275 51-66 (242)
116 2p65_A Hypothetical protein PF 41.6 7.4 0.00025 38.4 1.0 15 260-274 42-56 (187)
117 2chg_A Replication factor C sm 41.4 11 0.00036 38.3 2.2 26 475-500 102-127 (226)
118 3rc3_A ATP-dependent RNA helic 40.8 14 0.00047 45.5 3.4 40 262-301 156-202 (677)
119 1c4o_A DNA nucleotide excision 40.1 16 0.00056 44.8 3.9 42 263-304 30-79 (664)
120 4b4t_J 26S protease regulatory 37.3 16 0.00053 41.9 2.8 27 249-275 170-196 (405)
121 1ex7_A Guanylate kinase; subst 36.6 11 0.00038 38.3 1.3 14 261-274 1-14 (186)
122 3h4m_A Proteasome-activating n 36.0 15 0.00053 39.4 2.5 16 259-274 49-64 (285)
123 2dr3_A UPF0273 protein PH0284; 35.9 15 0.00053 38.2 2.4 39 260-299 22-71 (247)
124 1tue_A Replication protein E1; 35.5 8.1 0.00028 40.0 0.1 14 261-274 58-71 (212)
125 2qz4_A Paraplegin; AAA+, SPG7, 35.5 11 0.00039 39.8 1.3 15 260-274 38-52 (262)
126 3syl_A Protein CBBX; photosynt 34.6 11 0.00039 40.9 1.1 14 261-274 67-80 (309)
127 4b4t_M 26S protease regulatory 34.6 14 0.00047 42.9 1.9 26 249-274 203-228 (434)
128 4b4t_K 26S protease regulatory 34.3 17 0.00059 42.0 2.6 26 249-274 194-219 (428)
129 4b4t_L 26S protease subunit RP 33.7 18 0.0006 42.0 2.6 26 249-274 203-228 (437)
130 3lw7_A Adenylate kinase relate 33.5 12 0.00041 36.5 1.0 30 476-507 78-107 (179)
131 2qgz_A Helicase loader, putati 33.3 13 0.00045 40.9 1.3 14 261-274 152-165 (308)
132 1ly1_A Polynucleotide kinase; 32.6 12 0.00042 36.8 0.9 11 264-274 5-15 (181)
133 3kb2_A SPBC2 prophage-derived 32.0 13 0.00043 36.4 0.9 11 264-274 4-14 (173)
134 1ofh_A ATP-dependent HSL prote 31.9 15 0.0005 39.9 1.5 15 260-274 49-63 (310)
135 3b9p_A CG5977-PA, isoform A; A 31.1 14 0.00049 39.9 1.2 14 261-274 54-67 (297)
136 3dmq_A RNA polymerase-associat 31.0 34 0.0012 44.0 4.9 55 247-302 153-223 (968)
137 2x8a_A Nuclear valosin-contain 30.9 20 0.0007 38.6 2.4 25 250-274 33-57 (274)
138 3hws_A ATP-dependent CLP prote 30.6 21 0.00071 40.1 2.5 15 260-274 50-64 (363)
139 1lv7_A FTSH; alpha/beta domain 30.5 16 0.00054 38.7 1.4 15 260-274 44-58 (257)
140 1m7g_A Adenylylsulfate kinase; 30.2 21 0.00073 36.5 2.3 28 247-274 11-38 (211)
141 1g8p_A Magnesium-chelatase 38 30.1 15 0.0005 40.8 1.0 25 476-500 145-169 (350)
142 3t15_A Ribulose bisphosphate c 29.9 15 0.00051 40.1 1.1 13 263-275 38-50 (293)
143 2r62_A Cell division protease 29.4 14 0.00047 39.4 0.6 16 259-274 42-57 (268)
144 3cf0_A Transitional endoplasmi 29.3 23 0.0008 38.6 2.5 16 259-274 47-62 (301)
145 1z63_A Helicase of the SNF2/RA 29.2 34 0.0012 40.0 4.2 56 246-302 36-109 (500)
146 1l8q_A Chromosomal replication 29.1 16 0.00056 40.1 1.3 35 476-510 99-140 (324)
147 3pxg_A Negative regulator of g 29.0 23 0.00078 41.5 2.5 16 259-274 199-214 (468)
148 1ojl_A Transcriptional regulat 28.3 25 0.00085 38.5 2.5 16 259-274 23-38 (304)
149 3fb4_A Adenylate kinase; psych 27.9 16 0.00056 37.3 0.9 12 264-275 3-14 (216)
150 3nbx_X ATPase RAVA; AAA+ ATPas 27.8 16 0.00056 43.1 1.0 25 476-500 110-134 (500)
151 1kag_A SKI, shikimate kinase I 27.8 19 0.00066 35.2 1.4 13 262-274 5-17 (173)
152 3dl0_A Adenylate kinase; phosp 27.7 17 0.00057 37.3 0.9 12 264-275 3-14 (216)
153 3eie_A Vacuolar protein sortin 27.5 17 0.00059 40.1 1.1 14 261-274 51-64 (322)
154 2r2a_A Uncharacterized protein 27.5 17 0.00058 37.3 0.9 39 475-513 87-135 (199)
155 4b4t_H 26S protease regulatory 27.2 23 0.00077 41.3 2.0 27 249-275 231-257 (467)
156 3uk6_A RUVB-like 2; hexameric 26.9 18 0.00062 40.4 1.1 25 476-500 190-214 (368)
157 2r44_A Uncharacterized protein 26.9 13 0.00045 41.0 -0.0 28 477-504 111-138 (331)
158 3iij_A Coilin-interacting nucl 26.9 20 0.00069 35.5 1.3 13 262-274 12-24 (180)
159 2iyv_A Shikimate kinase, SK; t 26.8 20 0.0007 35.5 1.4 12 263-274 4-15 (184)
160 1nks_A Adenylate kinase; therm 26.5 19 0.00065 35.8 1.1 11 264-274 4-14 (194)
161 1d2n_A N-ethylmaleimide-sensit 26.5 17 0.00058 38.9 0.8 14 261-274 64-77 (272)
162 1xwi_A SKD1 protein; VPS4B, AA 26.4 18 0.00062 40.0 1.0 13 262-274 46-58 (322)
163 3cm0_A Adenylate kinase; ATP-b 26.2 19 0.00064 35.8 1.0 13 263-275 6-18 (186)
164 1qhx_A CPT, protein (chloramph 26.2 19 0.00064 35.5 0.9 12 263-274 5-16 (178)
165 4b4t_I 26S protease regulatory 26.0 24 0.00081 40.7 1.8 27 249-275 204-230 (437)
166 3pfi_A Holliday junction ATP-d 25.7 23 0.00078 39.1 1.6 35 475-509 106-140 (338)
167 1njg_A DNA polymerase III subu 25.4 20 0.00069 36.6 1.1 25 475-499 126-150 (250)
168 3trf_A Shikimate kinase, SK; a 25.4 20 0.0007 35.5 1.1 13 262-274 6-18 (185)
169 2qor_A Guanylate kinase; phosp 25.4 24 0.00083 35.8 1.7 14 261-274 12-25 (204)
170 1kht_A Adenylate kinase; phosp 25.4 20 0.00068 35.6 1.0 13 263-275 5-17 (192)
171 2vli_A Antibiotic resistance p 25.3 21 0.00074 35.2 1.2 13 263-275 7-19 (183)
172 1sxj_D Activator 1 41 kDa subu 25.3 26 0.0009 38.6 2.1 35 475-509 133-171 (353)
173 1zuh_A Shikimate kinase; alpha 25.3 19 0.00066 35.1 0.9 13 262-274 8-20 (168)
174 1via_A Shikimate kinase; struc 25.2 21 0.00072 35.2 1.1 12 263-274 6-17 (175)
175 1zp6_A Hypothetical protein AT 25.1 21 0.00071 35.6 1.1 13 262-274 10-22 (191)
176 2ipc_A Preprotein translocase 25.0 72 0.0025 40.2 5.9 96 247-343 79-212 (997)
177 1tev_A UMP-CMP kinase; ploop, 25.0 20 0.00069 35.6 0.9 11 264-274 6-16 (196)
178 1y63_A LMAJ004144AAA protein; 25.0 20 0.00069 35.8 0.9 13 262-274 11-23 (184)
179 1u0j_A DNA replication protein 24.9 21 0.00072 38.4 1.1 13 262-274 105-117 (267)
180 2rhm_A Putative kinase; P-loop 24.7 21 0.00072 35.5 1.0 12 264-275 8-19 (193)
181 1hqc_A RUVB; extended AAA-ATPa 24.7 24 0.00083 38.5 1.6 35 476-510 91-125 (324)
182 2b8t_A Thymidine kinase; deoxy 24.7 25 0.00085 36.8 1.6 26 263-288 14-50 (223)
183 2qp9_X Vacuolar protein sortin 24.5 23 0.00079 39.7 1.4 14 261-274 84-97 (355)
184 2c95_A Adenylate kinase 1; tra 24.4 22 0.00074 35.6 1.0 13 263-275 11-23 (196)
185 3tlx_A Adenylate kinase 2; str 24.3 21 0.00072 37.6 0.9 13 263-275 31-43 (243)
186 3bh0_A DNAB-like replicative h 24.2 37 0.0013 37.3 3.0 39 261-300 68-117 (315)
187 4fcw_A Chaperone protein CLPB; 24.2 17 0.0006 39.4 0.3 25 476-500 120-144 (311)
188 2v1u_A Cell division control p 24.1 20 0.0007 40.0 0.8 24 476-499 131-156 (387)
189 1qf9_A UMP/CMP kinase, protein 24.0 22 0.00076 35.2 1.0 13 263-275 8-20 (194)
190 2zts_A Putative uncharacterize 23.9 25 0.00084 36.6 1.4 38 261-299 30-79 (251)
191 2bwj_A Adenylate kinase 5; pho 23.9 22 0.00077 35.5 1.0 13 263-275 14-26 (199)
192 1e6c_A Shikimate kinase; phosp 23.7 22 0.00075 34.7 0.9 12 263-274 4-15 (173)
193 1um8_A ATP-dependent CLP prote 23.6 25 0.00086 39.6 1.5 15 260-274 71-85 (376)
194 1ixz_A ATP-dependent metallopr 23.3 34 0.0012 35.9 2.4 14 261-274 49-62 (254)
195 2orw_A Thymidine kinase; TMTK, 23.3 26 0.00088 35.3 1.3 24 264-287 6-40 (184)
196 2chq_A Replication factor C sm 23.3 25 0.00087 38.1 1.4 25 475-499 102-126 (319)
197 2d7d_A Uvrabc system protein B 23.3 45 0.0015 40.9 3.7 42 263-304 34-83 (661)
198 1zak_A Adenylate kinase; ATP:A 23.0 24 0.00081 36.4 1.0 14 262-275 6-19 (222)
199 1gvn_B Zeta; postsegregational 23.0 28 0.00097 37.7 1.7 11 264-274 36-46 (287)
200 2cdn_A Adenylate kinase; phosp 23.0 23 0.00079 35.8 0.9 13 263-275 22-34 (201)
201 1nlf_A Regulatory protein REPA 22.9 44 0.0015 35.8 3.2 15 260-274 29-43 (279)
202 2plr_A DTMP kinase, probable t 22.8 23 0.0008 35.7 0.9 11 264-274 7-17 (213)
203 2qby_B CDC6 homolog 3, cell di 22.8 31 0.0011 38.5 2.1 23 478-500 136-160 (384)
204 1iqp_A RFCS; clamp loader, ext 22.7 29 0.00099 37.7 1.7 25 475-499 110-134 (327)
205 1e4v_A Adenylate kinase; trans 22.7 24 0.00083 36.1 1.0 12 264-275 3-14 (214)
206 1ukz_A Uridylate kinase; trans 22.6 24 0.00082 35.7 0.9 12 264-275 18-29 (203)
207 2w0m_A SSO2452; RECA, SSPF, un 22.6 29 0.00098 35.5 1.6 28 261-288 23-61 (235)
208 2pbr_A DTMP kinase, thymidylat 22.5 24 0.00083 35.0 1.0 11 264-274 3-13 (195)
209 3pvs_A Replication-associated 22.4 30 0.001 40.3 1.8 34 475-508 106-139 (447)
210 3t61_A Gluconokinase; PSI-biol 22.4 25 0.00084 35.6 1.0 13 263-275 20-32 (202)
211 1zd8_A GTP:AMP phosphotransfer 22.3 25 0.00085 36.4 1.0 13 263-275 9-21 (227)
212 1knq_A Gluconate kinase; ALFA/ 22.2 25 0.00086 34.5 1.0 12 263-274 10-21 (175)
213 3vaa_A Shikimate kinase, SK; s 22.2 26 0.00089 35.4 1.1 13 262-274 26-38 (199)
214 1aky_A Adenylate kinase; ATP:A 22.0 25 0.00085 36.2 0.9 13 263-275 6-18 (220)
215 2pt5_A Shikimate kinase, SK; a 21.4 26 0.0009 34.0 0.9 12 264-275 3-14 (168)
216 2wwf_A Thymidilate kinase, put 21.3 27 0.00092 35.4 1.0 12 263-274 12-23 (212)
217 3hu3_A Transitional endoplasmi 21.1 41 0.0014 39.6 2.6 16 259-274 236-251 (489)
218 2z0h_A DTMP kinase, thymidylat 21.0 27 0.00092 34.9 0.9 11 264-274 3-13 (197)
219 2c9o_A RUVB-like 1; hexameric 20.8 27 0.00093 40.6 1.0 24 477-500 297-320 (456)
220 2z4s_A Chromosomal replication 20.7 28 0.00097 40.3 1.1 36 475-510 194-236 (440)
221 2xb4_A Adenylate kinase; ATP-b 20.6 28 0.00096 36.0 1.0 12 264-275 3-14 (223)
222 1jjv_A Dephospho-COA kinase; P 20.4 29 0.00098 35.2 1.0 11 264-274 5-15 (206)
223 1iy2_A ATP-dependent metallopr 20.4 43 0.0015 35.8 2.5 15 260-274 72-86 (278)
224 2j41_A Guanylate kinase; GMP, 20.3 29 0.00099 34.9 1.0 13 262-274 7-19 (207)
225 4eun_A Thermoresistant glucoki 20.3 29 0.00099 35.1 1.0 13 262-274 30-42 (200)
226 1in4_A RUVB, holliday junction 20.2 30 0.001 38.4 1.1 24 476-499 103-126 (334)
227 4gp7_A Metallophosphoesterase; 20.2 29 0.001 34.2 1.0 12 263-274 11-22 (171)
228 3be4_A Adenylate kinase; malar 20.0 30 0.001 35.6 1.0 13 263-275 7-19 (217)
No 1
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=100.00 E-value=6.5e-77 Score=788.92 Aligned_cols=732 Identities=13% Similarity=0.124 Sum_probs=568.7
Q ss_pred EEEEecCCCCC--------------CCCCCCEEEEeccHHHHHHHHHHHHhhhccccCCCceEechHHHHHHHHHHHHHH
Q 001127 264 LLIVAGPGSGK--------------GISPSNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEK 329 (1148)
Q Consensus 264 ~lI~G~AGSGK--------------~~~~~~ILvltft~~Aa~ei~~RL~~~l~~~~~~~v~V~Tfhs~a~rIl~~~~~~ 329 (1148)
-+|+|+||||| +..|.+||+++ ||+++++|++||...++..+..+++|+|||+||+++++++|
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lV-P~q~TFt~~~rl~~~l~~~~~~~~~V~TFhsla~~il~~~g-- 80 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLV-PDQMTFLMEYELAKTPDMGGMIRAQVFSFSRLAWRVLQHTG-- 80 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEEC-CGGGHHHHHHHHTCCSSCSEESSEEEECHHHHHHHHHHHHS--
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEe-cCcccHHHHHHHHHhhhhcceeeeEEecHHHHHHHHHHHcC--
Confidence 47999999999 44567888874 46677779999999888766788999999999999999986
Q ss_pred hcCCCCceecChHHHHHHHHHHHHHHHhhhHHHHhhhhccccccccchhhhHHHHHHHHHHhhhhhhhhHHhhhHHHHHh
Q 001127 330 LERTSEFLIYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409 (1148)
Q Consensus 330 ~~~~~~~~i~~~~~~~~~l~~il~~~~~~~~~~~~~~~~d~l~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~ 409 (1148)
...+.++++.++.+++++++..+..++ ..|..... ..+|.+.+.+
T Consensus 81 ---~~~~~ild~~~~~~ll~~il~~~~~~l---------------~~f~~~~~-----------------~~~f~~~l~~ 125 (1166)
T 3u4q_B 81 ---GMSRPFLTSTGVQMLLRKLIEEHKQEF---------------KVYQKASD-----------------KSGFTAQVER 125 (1166)
T ss_dssp ---CTTSCEECHHHHHHHHHHHHHHGGGGC---------------SSTTTTSS-----------------STHHHHHHHH
T ss_pred ---CCcccCcCHHHHHHHHHHHHHHhHHHH---------------HHHhhccC-----------------ChHHHHHHHH
Confidence 244689999999999999887665443 33332221 4567888888
Q ss_pred hHHHHHHcCCCHHHHHhhH-----------------HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhcccHHHHHHh
Q 001127 410 GMDVAKASGKTPAEFRKIG-----------------DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472 (1148)
Q Consensus 410 ~i~~~k~~~~~~e~l~~~~-----------------~~~~~~iy~~Y~~~L~~~~~iD~~Dll~~a~~lL~~~~~l~~~l 472 (1148)
.++++|+++++|+++.... ......+|+.|++.++ .+++||+|++..+.++|.+++.+.
T Consensus 126 ~is~~k~~~i~~~~l~~~~~~~~~~~~~~~~~~~~k~~~l~~iy~~y~~~l~-~~~~Df~Dll~~~~~~l~~~~~l~--- 201 (1166)
T 3u4q_B 126 MLTEFKRYCLEPEDIRRMAESGTASEYRGERVLSEKLHDLSILYQQMEKSLA-DQYLHSEDYLTLLAEHIPLAEDIK--- 201 (1166)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSTTSCCTTHHHHHHHHHHHHHHHHHHHHHST-TTCEEGGGHHHHHHHHSTTCGGGT---
T ss_pred HHHHHHHcCCCHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHhccccccC---
Confidence 9999999999999886542 1234689999999998 799999999999999999877653
Q ss_pred ccCcCEEEEecCccCCHHHHHHHHHHHc-CCcEE--EEcC--------CCCcccccCCCChHHHHHHHHh--cCCceEEE
Q 001127 473 QDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRIT--IVGD--------DDQSIFSFNGADISGFDSFRKD--FLNYKEIR 539 (1148)
Q Consensus 473 ~~~fd~IiIDEfQDftp~q~~lL~~L~~-~~~l~--lvGD--------~~QsIy~frga~~~lf~~l~~~--~~~~~~~~ 539 (1148)
.++|+|||||||||.|+.+|..|+. +.+++ +||| ++|+||+|+|+++..+..+.+. ++....+.
T Consensus 202 ---~~~IlVDEfQD~~~~Q~~ll~~L~~~~~~~~v~lvGD~~~~~~~~~~QsIY~~rga~~~~l~~~~~~~~~~~~~~~~ 278 (1166)
T 3u4q_B 202 ---GAHIYVDGFYQFTPQEFRVLEQLMVHAEHITFSLTADKPSYEREPHELELFRMTGKTYYRLHQKAKELNLDITYKEL 278 (1166)
T ss_dssp ---TCEEEECSCSCCCHHHHHHHHHHHHHCSEEEEEEECSSCCSSSCCCTTCTTHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ---CCEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEEeCcccccCCCCCCCcchhHHHHHHHHHHHHHHcCCCccccee
Confidence 2699999999999999999999987 44555 6699 8999999999999999999988 66567889
Q ss_pred eccCCCChhHHHHHHHhhhhhhhhhcccccccccCCCCceeEEecCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCcEEEE
Q 001127 540 LTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAIL 619 (1148)
Q Consensus 540 L~~nyRs~~~I~~~an~ll~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~E~~~Va~~I~~Lv~~~~~~g~~~~DIAVL 619 (1148)
|+.|||++++|+.+.+..+.. .... .+ ...+..+.++.+.+..+|+++|++.|++++.+ +|++|+|||||
T Consensus 279 L~~nyRs~~~il~~i~~~~~~----~~~~-~~--~~~~~~i~i~~~~~~~~Ea~~ia~~I~~l~~~---~g~~~~diAVL 348 (1166)
T 3u4q_B 279 SGTERHTKTPELAHLEAQYEA----RPAI-PY--AEKQEALTVMQAANRRAELEGIAREIHALVRE---KGYRYKDVAIL 348 (1166)
T ss_dssp CSCSTTTTCHHHHHHHHSSSC----SSCC-CC--CSCCSSEEEEEESSHHHHHHHHHHHHHHHHHT---SCCCGGGEEEE
T ss_pred cCCCCCCCCHHHHHHHHhHhh----cCCC-cc--CCCCCCeEEEEcCChHHHHHHHHHHHHHHHHh---cCCChhheEEE
Confidence 999999999998765543322 1111 11 13456699999999999999999999999984 59999999999
Q ss_pred EecC-cChHHHHHHHHHCCCCeEEc-CccccccHHHHHHHHHHHHhCCCCCCchHHHHHHH-hh-hhh--HHHHHHHHHH
Q 001127 620 YRRQ-VSGKVFQTAFRERKIPFNIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKA-FL-LLE--KEEKKRVIDH 693 (1148)
Q Consensus 620 ~r~~-~~~~~l~~~L~~~gIP~~i~-~~~l~~~p~v~~i~slL~~~~~~~d~~~~~~llk~-L~-~~~--~~~~~~~id~ 693 (1148)
+|++ .+...+..+|.++||||+++ +.+++++|+|+.++++|+++.++++..++.+++++ +. +.. .......++.
T Consensus 349 ~R~~~~~~~~i~~~L~~~gIP~~~~~~~~~~~~~~v~~lla~L~~~~~~~d~~~l~rlL~~p~~~gi~~~~~~~~~~l~~ 428 (1166)
T 3u4q_B 349 ARQPEDYKDMVKEVFADYEIPYFIDGKASMLNHPLIEFIRSSLDVLKGNWRYEAVFRCVKTELLFPLNEPKAKVREQVDQ 428 (1166)
T ss_dssp ESCGGGTHHHHHHHHHHTTCCEEESSCCBSTTSHHHHHHHHHHHHHHTTCCHHHHHHHHTTTSSSCSSSCHHHHHHHHHH
T ss_pred eCChHHHHHHHHHHHHHcCCCEEECCCcchhcCHHHHHHHHHHHHHHcCCCHHHHHHHHcCCCcCCccccccccHHHHHH
Confidence 9996 59999999999999999998 68999999999999999999999999999999998 33 333 2223566899
Q ss_pred HHHHHhhhccchHHHHh--hhhhccccch--------hh---h-h-hhHhhHHHHHHHHHHHHHHhhCCCHHHHHHHHHh
Q 001127 694 IDKISTIRKCSFISAAC--DIFGAKISGT--------FK---R-S-QLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758 (1148)
Q Consensus 694 Leny~~~~gi~~~~~~~--~~~~~~~~~~--------~~---~-~-~~~~~r~~~~~l~~l~~~~~~~~~~~~~~~~l~~ 758 (1148)
|++|+...|+++. .|. ..|....... .. . . .......+...+..+.+.+....+..+++..++.
T Consensus 429 Le~~~~~~gi~g~-~w~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~f~~~l~~~~~~~~~~~~l~~ 507 (1166)
T 3u4q_B 429 LENYCIAYGIKGD-RWTKGDRFQYRRFVSLDDDFAQTDQEIEMENMLNDTRDWIVPPLFQLQKRMKKAKTVQEKAEALYR 507 (1166)
T ss_dssp HHHHHHHHTCCTH-HHHC------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBHHHHHHHHHH
T ss_pred HHHHHHHhCCChh-hcCCCCCceeecccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Confidence 9999999999975 333 2332111000 00 0 0 1112345666777777777777778888888777
Q ss_pred hcHHH----HHHHHhhhc-ccccccccccchhHHHHHHHHHHHHHHHHHhhhhhhhccCCcccccccccchHHHHHHHHH
Q 001127 759 MVPQK----YLLEQRAVV-DFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYIS 833 (1148)
Q Consensus 759 ~~~~~----~l~~~~~~~-~~~~~~~~~e~~q~~~vl~~lld~l~e~l~~~~~~~~~~~~~~~~~~~~~~~L~~f~~~L~ 833 (1148)
++..- .+..|.... ..+....+.++.|+|+.+..+++++.++.+.. ..++.+|+++|.
T Consensus 508 ~l~~~~~~~~l~~~~~~~~~~g~~~~~~~~~q~~~~l~~ll~~~~~~~~~~-----------------~~~l~~f~~~l~ 570 (1166)
T 3u4q_B 508 YLEETDVPLKLDQERQRAEDDGRIIEAQQHQQAWDAVIQLLEEFVEMMGDD-----------------EISLDLFQQMIE 570 (1166)
T ss_dssp HHHHTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHSTTS-----------------BCCHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------------ccCHHHHHHHHH
Confidence 74321 122232222 22223345677899999999999998876543 578999999999
Q ss_pred hhhhhhhcccCCCCCCcEEEEccccccCCCCCEEEEeecCCCCCccccccCCccCcc----------------cccHHHH
Q 001127 834 ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEK----------------GTSVEEE 897 (1148)
Q Consensus 834 ~~~~~~~~~~ip~~~D~V~V~Tih~sKGlE~~~VfV~Glneg~~P~~~~~~g~l~d~----------------e~~l~EE 897 (1148)
.++.....+.+|+..|+|+|+|+|.+||++||+|||+|+|+|+||.....++++++. .+.+++|
T Consensus 571 ~~l~~~~~~~~~~~~d~V~i~t~~~argl~f~~V~l~G~~eg~~P~~~~~~~~l~~~~R~~l~~~g~~l~~~~~~~~~ee 650 (1166)
T 3u4q_B 571 AGAESLTFSLIPPALDQVFVGNMDLSRMYGTSCTFVLGANDGVLPARPDENGVLSDDDREWLKTIGVELSSGGRERLLDE 650 (1166)
T ss_dssp HHHHHCBCCCCCCBSSCEEEEESSSCCCSSCSEEEEECCBTTTTTTCCCCCSSSCHHHHHHHHHHTCCCCCCSSHHHHHH
T ss_pred HHHHhCCcCCCCCCCCEEEEecCcccccCCCCEEEEeCCCcCCCCCCCCCCCCCCHHHHHHHHhCCCcCCCchHHHHHHh
Confidence 988877777888999999999999999999999999999999999998888876543 2467899
Q ss_pred HHHHHHHHhcccceEEEEEEeecccccccCCchhHHhhhhhhHHHHhhhhcccc-----------CCCchhhhhH-----
Q 001127 898 RRLLYVAMTRARKKLFILYVMMDANWQLLQPSRFLKEIPHHLREVQAEQSVQDQ-----------HENIPEGTAQ----- 961 (1148)
Q Consensus 898 rrL~YVAlTRAk~~L~LSy~~~d~~g~~~~PS~fl~~l~~~f~~~~~~~~~~~~-----------~~~~~~~~~~----- 961 (1148)
+|+||||||||+++|||||+..+.+|++..||+||.+|...||.+........+ ...+..++..
T Consensus 651 r~l~y~altrA~~~L~lsy~~~~~~~~~~~pS~~l~el~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 730 (1166)
T 3u4q_B 651 HFLIYMAFSSPSDRLYVSYPIADAEGKTLLPSMIVKRLEELFPHHKERLLTNEPEQVSDEEQLMYVVNKSVAQSFTASQL 730 (1166)
T ss_dssp HHHHHHHHTSCSSEEEEEEESSCSSSCCCCBCHHHHHHHHHSTTCCCEEECSCGGGSCHHHHTTSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCeEEEEEeccCCCCCccCCCHHHHHHHHHccccceeccccCcccccchhhhhhhCCHHHHHHHHHHHH
Confidence 999999999999999999999988899999999999999998754321110000 0111111111
Q ss_pred -------------------------------hhhcCCCccCCCcCCCcccccccccCcccChhhhhHHhhChhhhHHHhh
Q 001127 962 -------------------------------FTINLPREENCCETDLVSTDFLNVQLSGAATESMELLEACNGNSFLRRF 1010 (1148)
Q Consensus 962 -------------------------------L~~~~~~~~p~~~~~~~~~~~L~~~~~~~SvSrlE~~~~CPf~~Fl~~~ 1010 (1148)
+..++...++...+++...+.|||+++++|||+||+|.+|||+||+ +|
T Consensus 731 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lyg~~~~~S~S~le~~~~CP~~~f~-~y 809 (1166)
T 3u4q_B 731 RLWTREYDISDVWWSTYNVLMSEQDRLQSKKLFSSLFFRNEVKQLERSVSRQLYGERIQGSVSRMETFNACPFSHFA-SH 809 (1166)
T ss_dssp HHHHTTCCCCTHHHHHHHHHTSSTTHHHHHHHHTTTTCCCCCCCCCHHHHHHHTCSSBCCBHHHHHHHHHCHHHHHH-HT
T ss_pred HHhhhcCcccHHHHHHHHHHHhCchhHHHHHHHHhhcccCCCCCCCHHHHHHHhCCCcCCCHHHHHHHHhChHHHHH-Hh
Confidence 1222333334445666677889999999999999999999999999 88
Q ss_pred cCcc---------cchhhhHHHHHHHHhhcC-----------CHHHHHHHHHHHHHH-------HHhhhhhhHHHHHHHH
Q 001127 1011 SVED---------RSIISHLFHQWAKKKAFQ-----------EPKRLLNKVDFVIDE-------RLRVKKNKHKDVLRAL 1063 (1148)
Q Consensus 1011 Gl~~---------a~~iGtl~H~~le~~~~~-----------~~~~~~~~~~~~v~e-------~~~~s~~r~~~~~~~l 1063 (1148)
|+++ ++++||+||++++.+... +.+++.+++++++++ .+..+++|++|+..++
T Consensus 810 ~L~l~~~~~~~~~~~~~G~~~H~~Le~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 889 (1166)
T 3u4q_B 810 GLHLKERQFFKLEAPDIGQLFHSSLKLISDRLRDEKLDWRDLTKEQCELFSYDAVERLAPKLQKEILLSSNRHYYVKEKL 889 (1166)
T ss_dssp TSCCCCCCCSSCCSHHHHHHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHGGGSTTTHHHHSHHHHHHHHHH
T ss_pred ccCCCCccccCCCcchhhHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHH
Confidence 8833 678999999999998842 778899999999988 1447899999999999
Q ss_pred HHHhcc
Q 001127 1064 KSCLSS 1069 (1148)
Q Consensus 1064 ~~~l~~ 1069 (1148)
++++..
T Consensus 890 ~~~~~~ 895 (1166)
T 3u4q_B 890 QKIVTR 895 (1166)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988874
No 2
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=100.00 E-value=4.2e-73 Score=716.61 Aligned_cols=612 Identities=32% Similarity=0.461 Sum_probs=457.1
Q ss_pred HHhhcCCHHHHHHhccCCCCCEEEEecCCCCC---------------CCCCCCEEEEeccHHHHHHHHHHHHhhhccccC
Q 001127 243 KYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAASEMRDRIGSIVGKATA 307 (1148)
Q Consensus 243 ~~~~~Ln~~Qr~aV~~~~~~~~lI~G~AGSGK---------------~~~~~~ILvltft~~Aa~ei~~RL~~~l~~~~~ 307 (1148)
.++..||++|++||. ...++++|.|+||||| +.+|.+||++||||+||.+|++||...++.. .
T Consensus 7 ~~l~~Ln~~Q~~av~-~~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~-~ 84 (724)
T 1pjr_A 7 QLLAHLNKEQQEAVR-TTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGA-A 84 (724)
T ss_dssp HHHTTSCHHHHHHHH-CCSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGG-G
T ss_pred hHHhhCCHHHHHHHh-CCCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhccc-c
Confidence 367889999999994 5689999999999999 4578999999999999999999999987653 3
Q ss_pred CCceEechHHHHHHHHHHHHHHhcCCCCceecChHHHHHHHHHHHHHHHhhhHHHHhhhhccccccccchhhhHHHHHHH
Q 001127 308 KELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMM 387 (1148)
Q Consensus 308 ~~v~V~Tfhs~a~rIl~~~~~~~~~~~~~~i~~~~~~~~~l~~il~~~~~~~~~~~~~~~~d~l~~~~~f~~~~~~~~~~ 387 (1148)
.++.|+|||+||+++++.++...|.++++.++++.+...++.++++.+..+. ..|.
T Consensus 85 ~~~~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d~~~l~~~~~~~~~~~~---------------~~~~--------- 140 (724)
T 1pjr_A 85 EDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQLSVMKTILKEKNIDP---------------KKFE--------- 140 (724)
T ss_dssp TTSEEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHHHHHHHHHHHHTTSCTT---------------TTCC---------
T ss_pred cCcEEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHHHHHHHHHHHHHcCCCc---------------ccCC---------
Confidence 5789999999999999999998999999999999888888777665332110 1111
Q ss_pred HHHhhhhhhhhHHhhhHHHHHhhHHHHHHcCCCHHHHHhh----HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhc
Q 001127 388 NAMLFFSMSSFKLCQYNKFERDGMDVAKASGKTPAEFRKI----GDEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463 (1148)
Q Consensus 388 ~~~~~~~~~~~~~~~f~~~l~~~i~~~k~~~~~~e~l~~~----~~~~~~~iy~~Y~~~L~~~~~iD~~Dll~~a~~lL~ 463 (1148)
.+.+...++.+|+.+++|+.+... .......+|..|++.+++++.+||+|++..+.++|.
T Consensus 141 ----------------~~~~~~~i~~~k~~~~~~~~~~~~~~~~~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~~~~ll~ 204 (724)
T 1pjr_A 141 ----------------PRTILGTISAAKNELLPPEQFAKRASTYYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFD 204 (724)
T ss_dssp ----------------HHHHHHHHHHHHHTTCCHHHHTTC---CHHHHHHHHHHHHHHHHHHTTEECTTHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHcCCCHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 112334456788889998877532 234557899999999999999999999999999999
Q ss_pred ccHHHHHHhccCcCEEEEecCccCCHHHHHHHHHHHcC-CcEEEEcCCCCcccccCCCChHHHHHHHHhcCCceEEEecc
Q 001127 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTR 542 (1148)
Q Consensus 464 ~~~~l~~~l~~~fd~IiIDEfQDftp~q~~lL~~L~~~-~~l~lvGD~~QsIy~frga~~~lf~~l~~~~~~~~~~~L~~ 542 (1148)
++|.+...++.+|+||+||||||||+.|+.+|..|++. +++++|||++|+||+|||+++..+..|.+.|++...+.|+.
T Consensus 205 ~~~~v~~~~~~rf~~IlVDEfQDtn~~Q~~ll~~L~~~~~~l~vVGD~~QsIY~fRGA~~~~~~~f~~~~~~~~~i~L~~ 284 (724)
T 1pjr_A 205 RVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQNICAVGDADQSIYRWRGADIQNILSFERDYPNAKVILLEQ 284 (724)
T ss_dssp HCHHHHHHHHHHCSEEEESSGGGCCHHHHHHHHHHHTTTCCEEEEECGGGCCCGGGTCCTHHHHTHHHHSTTCEEEEECB
T ss_pred hCHHHHHHHHhhCCEEEEEhHhcCCHHHHHHHHHHHcCCCeEEEEECchhhcccccCCCHHHHHHHHHHCCCCcEEECCC
Confidence 99999999999999999999999999999999999874 68999999999999999999999999999998888999999
Q ss_pred CCCChhHHHHHHHhhhhhhhhhcccccccccCCCCceeEEecCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCcEEEEEec
Q 001127 543 NYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRR 622 (1148)
Q Consensus 543 nyRs~~~I~~~an~ll~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~E~~~Va~~I~~Lv~~~~~~g~~~~DIAVL~r~ 622 (1148)
||||++.|++++|.++.++..+.. +..++....|..+.++.+.+..+|+.+|++.|.+++.. +|++|+|||||+|+
T Consensus 285 NyRSt~~Il~~an~li~~n~~~~~-k~l~~~~~~g~~i~~~~~~~~~~Ea~~va~~I~~l~~~---~g~~~~diAIL~R~ 360 (724)
T 1pjr_A 285 NYRSTKRILQAANEVIEHNVNRKP-KRIWTENPEGKPILYYEAMNEADEAQFVAGRIREAVER---GERRYRDFAVLYRT 360 (724)
T ss_dssp CSSSCHHHHHHHHHHHTTCSSCCC-CCCBCSSCCCCCEEEEEEEEHHHHHHHHHHHHHHHHTT---TSCCGGGEEEEESS
T ss_pred CCCCCHHHHHHHHHHHHhCccccC-cccccccCCCCceEEEecCCHHHHHHHHHHHHHHHHHh---cCCChhheeeeeec
Confidence 999999999999999988765543 34455556677899999999999999999999999874 49999999999999
Q ss_pred CcChHHHHHHHHHCCCCeEEc-CccccccHHHHHHHHHHHHhCCCCCCchHHHHHHHhh-hhhHHHHHHHHHHHHHHHhh
Q 001127 623 QVSGKVFQTAFRERKIPFNIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFL-LLEKEEKKRVIDHIDKISTI 700 (1148)
Q Consensus 623 ~~~~~~l~~~L~~~gIP~~i~-~~~l~~~p~v~~i~slL~~~~~~~d~~~~~~llk~L~-~~~~~~~~~~id~Leny~~~ 700 (1148)
+.+...++.+|.++||||.+. +..++++|+|+.++++|+++.+++|..++.+++++.. +.. ...++.|++++..
T Consensus 361 ~~~~~~le~~L~~~gIPy~~~g~~~f~~~~eikd~la~Lr~~~np~d~~~~~ril~~p~~gi~----~~~l~~l~~~~~~ 436 (724)
T 1pjr_A 361 NAQSRVMEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIG----ASTIDKLVRYAAD 436 (724)
T ss_dssp GGGHHHHHHHHHHTTCCEEEETSCCGGGSHHHHHHHHHHHHHHCTTCHHHHHHHTTSSCCTTT----SCCCC--------
T ss_pred chhHHHHHHHHHHcCCCEEEeCCcchhhCHHHHHHHHHHHHHcCcCcHHHHHHHHcCcccCCC----HHHHHHHHHHHHH
Confidence 999999999999999999997 6899999999999999999999999999999998732 221 1225567777776
Q ss_pred hccchHHHHhhhhhccccchhhhhhhHhhHHHHHHHHHHHHHHhhCCCHHHHHHHHHhhcHH-HHHHHHhhhcccccccc
Q 001127 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQ-KYLLEQRAVVDFDGGKL 779 (1148)
Q Consensus 701 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~-~~l~~~~~~~~~~~~~~ 779 (1148)
.++.++..+...-... .........+.+...+..+..... ..++.++++.+++.... ..+... .
T Consensus 437 ~~~~~~~~~~~~~~~~----~~~~~~~~l~~f~~~l~~~~~~~~-~~~~~~~l~~il~~~g~~~~l~~~------~---- 501 (724)
T 1pjr_A 437 HELSLFEALGELEMIG----LGAKAAGALAAFRSQLEQWTQLQE-YVSVTELVEEVLDKSGYREMLKAE------R---- 501 (724)
T ss_dssp ----CTTTTTSHHHHC----CTTTTTTTTHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHTSHHHHHHHH------C----
T ss_pred cCCCHHHHHHHhhhcc----CCHHHHHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHhcCHHHHHHhc------C----
Confidence 6666544322110000 001111122345555555554332 34566666666554321 111110 0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhhhhhhhccCCcccccccccchHHHHHHHHHhhhh--hhhcccCCCCCCcEEEEccc
Q 001127 780 LNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERET--EHFRTQRHDNENSVTLTTIH 857 (1148)
Q Consensus 780 ~~e~~q~~~vl~~lld~l~e~l~~~~~~~~~~~~~~~~~~~~~~~L~~f~~~L~~~~~--~~~~~~ip~~~D~V~V~Tih 857 (1148)
..+...-+..+..+++.+.+|.... ...++.+|++.+..... ....+.+|+..|+|+|||+|
T Consensus 502 ~~~~~~r~~nl~~l~~~~~~~~~~~----------------~~~~l~~fl~~l~l~~~~~~~~~~~~~~~~d~V~lmTiH 565 (724)
T 1pjr_A 502 TIEAQSRLENLDEFLSVTKHFENVS----------------DDKSLIAFLTDLALISDLDELDGTEQAAEGDAVMLMTLH 565 (724)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHC----------------SCCCHHHHHHHTTTCC-------------CCCEEEEEGG
T ss_pred CcchHHHHHHHHHHHHHHHHHhhcC----------------CcchHHHHHHHHHhhcccccccccccCCCCCeEEEEeee
Confidence 0011112233334444444442210 12579999988764211 11112234678999999999
Q ss_pred cccCCCCCEEEEeecCCCCCccccccCCccCcccccHHHHHHHHHHHHhcccceEEEEEEee---cccccccCCchhHHh
Q 001127 858 QSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMM---DANWQLLQPSRFLKE 934 (1148)
Q Consensus 858 ~sKGlE~~~VfV~Glneg~~P~~~~~~g~l~d~e~~l~EErrL~YVAlTRAk~~L~LSy~~~---d~~g~~~~PS~fl~~ 934 (1148)
+|||+|||+|||+|+++|.||..... +..+.++|||||||||||||+++|||||+.. .++++...||+||.+
T Consensus 566 ~aKGLEf~~Vfl~g~~eg~~P~~~~~-----~~~~~~eEErRL~YVaiTRA~~~L~ls~~~~r~~~g~~~~~~pS~Fl~e 640 (724)
T 1pjr_A 566 AAKGLEFPVVFLIGMEEGIFPHNRSL-----EDDDEMEEERRLAYVGITRAEEELVLTSAQMRTLFGNIQMDPPSRFLNE 640 (724)
T ss_dssp GGTTCCEEEEEECCCBTBTTTBGGGG-----TCHHHHHHHHHHHHHHHTTEEEEEEEEEEEEEEETTEEECCCBCHHHHH
T ss_pred hhcCCCCCEEEEeCCCCCCCCccccC-----CChHHHHHHHHHHHHHHHHHhheEEEEeecccccCCCcCcCCcCHHHHH
Confidence 99999999999999999999976432 1224689999999999999999999999965 444556789999999
Q ss_pred hhhhhH
Q 001127 935 IPHHLR 940 (1148)
Q Consensus 935 l~~~f~ 940 (1148)
|+..+.
T Consensus 641 i~~~~~ 646 (724)
T 1pjr_A 641 IPAHLL 646 (724)
T ss_dssp SCGGGE
T ss_pred hCHHHH
Confidence 987653
No 3
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.8e-71 Score=699.00 Aligned_cols=610 Identities=28% Similarity=0.407 Sum_probs=468.5
Q ss_pred cCCHHHHHHhccCCCCCEEEEecCCCCC---------------CCCCCCEEEEeccHHHHHHHHHHHHhhhccccCCCce
Q 001127 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAASEMRDRIGSIVGKATAKELT 311 (1148)
Q Consensus 247 ~Ln~~Qr~aV~~~~~~~~lI~G~AGSGK---------------~~~~~~ILvltft~~Aa~ei~~RL~~~l~~~~~~~v~ 311 (1148)
.||++|++||. ..+++++|.|+||||| +.+|++||++||||+||.+|++||.+.++.....++.
T Consensus 2 ~L~~~Q~~av~-~~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~~~~ 80 (673)
T 1uaa_A 2 RLNPGQQQAVE-FVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARGLM 80 (673)
T ss_dssp CCCHHHHHHHH-CCSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTTSE
T ss_pred CCCHHHHHHHh-CCCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcccccCCE
Confidence 58999999994 5689999999999999 4578999999999999999999999988765566899
Q ss_pred EechHHHHHHHHHHHHHHhcCCCCceecChHHHHHHHHHHHHHHHhhhHHHHhhhhccccccccchhhhHHHHHHHHHHh
Q 001127 312 ISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAML 391 (1148)
Q Consensus 312 V~Tfhs~a~rIl~~~~~~~~~~~~~~i~~~~~~~~~l~~il~~~~~~~~~~~~~~~~d~l~~~~~f~~~~~~~~~~~~~~ 391 (1148)
|+|||+||+++++.++...+..+++.++++.+..+++.+++.. .. ..
T Consensus 81 v~Tfhs~~~~il~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~---~~------------------~~------------ 127 (673)
T 1uaa_A 81 ISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEG---LI------------------ED------------ 127 (673)
T ss_dssp EEEHHHHHHHHHHHHHHHTTCCCCCCEECHHHHHHHHHHHTST---TS------------------CS------------
T ss_pred EEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHHHHHHHHHHHHH---hc------------------cc------------
Confidence 9999999999999999888988889999988887777665431 00 00
Q ss_pred hhhhhhhHHhhhHHHHHhhHHHHHHcCCCHHHHHhh----HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhcccHH
Q 001127 392 FFSMSSFKLCQYNKFERDGMDVAKASGKTPAEFRKI----GDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPE 467 (1148)
Q Consensus 392 ~~~~~~~~~~~f~~~l~~~i~~~k~~~~~~e~l~~~----~~~~~~~iy~~Y~~~L~~~~~iD~~Dll~~a~~lL~~~~~ 467 (1148)
..++.+.+...++.+++.+++|+.+... .......+|..|++.+++++.+||+|++..+..+|.+++.
T Consensus 128 --------~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~~l~~~~~lDfdDll~~~~~lL~~~~~ 199 (673)
T 1uaa_A 128 --------DKVLLQQLISTISNWKNDLKTPSQAAASAIGERDRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQANEE 199 (673)
T ss_dssp --------CHHHHHHHHHHHHHHHTTTCCTTHHHHTCCSHHHHHHHHHHHHHHHHHHHHTCEEHHHHHHHHHHHHHHCHH
T ss_pred --------chhhHHHHHHHHHHHHHcCCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhChH
Confidence 0123344455566888888888776542 1344578999999999999999999999999999999999
Q ss_pred HHHHhccCcCEEEEecCccCCHHHHHHHHHHHc-CCcEEEEcCCCCcccccCCCChHHHHHHHHhcCCceEEEeccCCCC
Q 001127 468 VFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRS 546 (1148)
Q Consensus 468 l~~~l~~~fd~IiIDEfQDftp~q~~lL~~L~~-~~~l~lvGD~~QsIy~frga~~~lf~~l~~~~~~~~~~~L~~nyRs 546 (1148)
+...++.+|++|+||||||||+.|+.+|..|+. ++++++|||++|+||+|||+++..|..+.+.++....+.|+.||||
T Consensus 200 ~~~~~~~~~~~ilVDEfQDt~~~Q~~ll~~L~~~~~~l~~vGD~~QsIy~frga~~~~~~~~~~~~~~~~~~~L~~nyRs 279 (673)
T 1uaa_A 200 VRKRWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPALKVIKLEQNYRS 279 (673)
T ss_dssp HHHHHHTTCSEEEESCGGGCBHHHHHHHHHHHTTTCCEEEECCGGGCCCGGGTBCTTHHHHHHHHSTTCEEECCCCBSSS
T ss_pred HHHHHHhhCcEEEEeccccCCHHHHHHHHHHhcCCCeEEEEeCchhhhhhccCCCHHHHHHHHHhCCCCeEEECCCCCCC
Confidence 999999999999999999999999999999987 4689999999999999999999999999999987788999999999
Q ss_pred hhHHHHHHHhhhhhhhhhcccccccccCCCCceeEEecCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCcEEEEEecCcCh
Q 001127 547 TRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSG 626 (1148)
Q Consensus 547 ~~~I~~~an~ll~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~E~~~Va~~I~~Lv~~~~~~g~~~~DIAVL~r~~~~~ 626 (1148)
++.|++++|.++.++....+ +..++....|..+.++.+.+..+|+++|++.|.+++.. +|++|+|||||+|++.+.
T Consensus 280 ~~~I~~~an~~~~~~~~~~~-~~l~~~~~~g~~i~~~~~~~~~~e~~~va~~I~~l~~~---~g~~~~diaVL~r~~~~~ 355 (673)
T 1uaa_A 280 SGRILKAANILIANNPHVFE-KRLFSELGYGAELKVLSANNEEHEAERVTGELIAHHFV---NKTQYKDYAILYRGNHQS 355 (673)
T ss_dssp CHHHHHHHHHHHHTSCCSSC-CCCCBSSCCCCCBEEEECSSHHHHHHHHHHHHHHHHHH---HCCCTTTEEEEESSSGGG
T ss_pred ChHHHHHHHHHHHhchhccc-ccccccCCCCCCceEEecCCHHHHHHHHHHHHHHHHhc---cCCCccCEEEEEechhhH
Confidence 99999999999987654442 33344444566799999999999999999999999843 399999999999999999
Q ss_pred HHHHHHHHHCCCCeEEc-CccccccHHHHHHHHHHHHhCCCCCCchHHHHHHHhh-hhhHHHHHHHHHHHHHHHhhhccc
Q 001127 627 KVFQTAFRERKIPFNIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFL-LLEKEEKKRVIDHIDKISTIRKCS 704 (1148)
Q Consensus 627 ~~l~~~L~~~gIP~~i~-~~~l~~~p~v~~i~slL~~~~~~~d~~~~~~llk~L~-~~~~~~~~~~id~Leny~~~~gi~ 704 (1148)
..+...|.++||||++. +.+++++|+|+.++++|+++.++++..++.+++++.+ +.. ...++.+++++...++.
T Consensus 356 ~~l~~~L~~~gIp~~~~~~~~~~~~~~v~~lla~L~~~~~~~d~~~~~~~l~~p~~gi~----~~~l~~l~~~~~~~~~~ 431 (673)
T 1uaa_A 356 RVFEKFLMQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIG----PATLKKLGEWAMTRNKS 431 (673)
T ss_dssp TTHHHHHHHTTCCEEESCCCCGGGCHHHHHHHHHHHHHHCTTCHHHHHHHSSTTCCCCC----HHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHCCCCEEEeCCcccccCHHHHHHHHHHHHHcCCccHHHHHHHHcCcccCCC----HHHHHHHHHHHHHcCCC
Confidence 99999999999999997 6899999999999999999999999999999988733 333 23467788888888888
Q ss_pred hHHHHhhhhhccccchhhhhhhHhhHHHHHHHHHHHHHHhhCCCHHHHHHHHHhhcH-HHHHHHHhhhcccccccccccc
Q 001127 705 FISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP-QKYLLEQRAVVDFDGGKLLNED 783 (1148)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~~~~~~~~e~ 783 (1148)
++..|.+... ...+..........+...+..+...... .+.+++..+++... ..++..+. ....+.
T Consensus 432 ~~~~~~~~~~---~~~~~~~~~~~l~~~~~~l~~~~~~~~~--~~~~~l~~~l~~~~~~~~l~~~~--------~~~~~~ 498 (673)
T 1uaa_A 432 MFTASFDMGL---SQTLSGRGYEALTRFTHWLAEIQRLAER--EPIAAVRDLIHGMDYESWLYETS--------PSPKAA 498 (673)
T ss_dssp HHHHTTCTTH---HHHSCSHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTHHHHHHHHS--------SSHHHH
T ss_pred HHHHHHhhhh---ccCCCHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHhCHHHHHHhcc--------ccchhH
Confidence 7665532100 0000000111122333334444333222 45555544443321 11111110 001123
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhccCCcccccccccchHHHHHHHHHhhhhhhhcccCCCCCCcEEEEccccccCCC
Q 001127 784 NDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLE 863 (1148)
Q Consensus 784 ~q~~~vl~~lld~l~e~l~~~~~~~~~~~~~~~~~~~~~~~L~~f~~~L~~~~~~~~~~~ip~~~D~V~V~Tih~sKGlE 863 (1148)
.+.|+.+..+++.+.++.+.. .-+...++.+|++.+....... ....++..|+|+|||+|+|||+|
T Consensus 499 ~~~~~~l~~l~~~~~~~~~~~-------------~~~~~~~l~~fl~~l~~~~~~~-~~~~~~~~d~V~l~TiH~sKGLE 564 (673)
T 1uaa_A 499 EMRMKNVNQLFSWMTEMLEGS-------------ELDEPMTLTQVVTRFTLRDMME-RGESEEELDQVQLMTLHASKGLE 564 (673)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC-------------SSSCCCCHHHHHHHHHTTCCCC-C---CCCCCSEEEEESTTTSSCC
T ss_pred HHHHHHHHHHHHHHHHHHhcc-------------ccCCcCCHHHHHHHHHcccccc-ccccccCCCeeEEEeeeeccccc
Confidence 456666777777776664311 0011358999999987642111 12345678999999999999999
Q ss_pred CCEEEEeecCCCCCccccccCCccCcccccHHHHHHHHHHHHhcccceEEEEEEeecc-ccc--ccCCchhHHhhhhhh
Q 001127 864 WDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDA-NWQ--LLQPSRFLKEIPHHL 939 (1148)
Q Consensus 864 ~~~VfV~Glneg~~P~~~~~~g~l~d~e~~l~EErrL~YVAlTRAk~~L~LSy~~~d~-~g~--~~~PS~fl~~l~~~f 939 (1148)
||+|||+|+++|.||..... .++.++|||||||||||||+++|||||+..+. .|+ ...||+||.+|+...
T Consensus 565 f~~Vfl~g~~eg~~P~~~~~------~~~~~~EErRL~YVA~TRAk~~L~ls~~~~~~~~g~~~~~~pS~fl~ei~~~~ 637 (673)
T 1uaa_A 565 FPYVYMVGMEEGFLPHQSSI------DEDNIDEERRLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDD 637 (673)
T ss_dssp EEEEEECCCBSSTTTTHHHH------TTTCCHHHHHHHHHHHHTEEEEEEEEECSSCCGGGSCCCCCBCHHHHHSCTTT
T ss_pred CCEEEEecCcCCCCCCcccC------cchhHHHHHHHHHHHHHhhhheEEEEEeccccccCCccCCCCCHhHHHhCHHH
Confidence 99999999999999975421 12468899999999999999999999997664 454 358999999998654
No 4
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=100.00 E-value=4.9e-71 Score=693.42 Aligned_cols=614 Identities=28% Similarity=0.447 Sum_probs=471.4
Q ss_pred HHHhhcCCHHHHHHhccCCCCCEEEEecCCCCC---------------CCCCCCEEEEeccHHHHHHHHHHHHhhhcccc
Q 001127 242 SKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAASEMRDRIGSIVGKAT 306 (1148)
Q Consensus 242 ~~~~~~Ln~~Qr~aV~~~~~~~~lI~G~AGSGK---------------~~~~~~ILvltft~~Aa~ei~~RL~~~l~~~~ 306 (1148)
..++..||++|++||. ...++++|+||||||| +.+|.+||++||||+|+++|++||.+.++..
T Consensus 4 ~~~~~~Ln~~Q~~av~-~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~- 81 (647)
T 3lfu_A 4 SYLLDSLNDKQREAVA-APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTS- 81 (647)
T ss_dssp HHHHTTCCHHHHHHHT-CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSC-
T ss_pred hHhhhcCCHHHHHHHh-CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccc-
Confidence 4678899999999995 5689999999999999 4567999999999999999999999987754
Q ss_pred CCCceEechHHHHHHHHHHHHHHhcCCCCceecChHHHHHHHHHHHHHHHhhhHHHHhhhhccccccccchhhhHHHHHH
Q 001127 307 AKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFM 386 (1148)
Q Consensus 307 ~~~v~V~Tfhs~a~rIl~~~~~~~~~~~~~~i~~~~~~~~~l~~il~~~~~~~~~~~~~~~~d~l~~~~~f~~~~~~~~~ 386 (1148)
..++.|+|||+||+++++.++...+.++++.+++..+...++.+++..+.... ..+
T Consensus 82 ~~~~~v~Tfhs~~~~il~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---------------~~~--------- 137 (647)
T 3lfu_A 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKAMNLDE---------------KQW--------- 137 (647)
T ss_dssp CTTCEEEEHHHHHHHHHHHTTGGGTCCTTCEEECHHHHHHHHHHHHHHTTCCT---------------TTS---------
T ss_pred cCCcEEEcHHHHHHHHHHHHHHHhCCCCCCEEeCHHHHHHHHHHHHHHcCCCc---------------ccc---------
Confidence 37899999999999999999998898888999999988888877765433221 001
Q ss_pred HHHHhhhhhhhhHHhhhHHHHHhhHHHHHHcCCCHHHHHhh---HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhc
Q 001127 387 MNAMLFFSMSSFKLCQYNKFERDGMDVAKASGKTPAEFRKI---GDEIGAAILENYNGILRSCNALDYHDLISCSVKLLS 463 (1148)
Q Consensus 387 ~~~~~~~~~~~~~~~~f~~~l~~~i~~~k~~~~~~e~l~~~---~~~~~~~iy~~Y~~~L~~~~~iD~~Dll~~a~~lL~ 463 (1148)
..+.+...++++|..+++++.+... .......+|+.|++.+++++.+||+|++..+..++.
T Consensus 138 ----------------~~~~~~~~i~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~y~~~~~~~~~~df~dl~~~~~~~l~ 201 (647)
T 3lfu_A 138 ----------------PPRQAMWYINSQKDEGLRPHHIQSYGNPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWL 201 (647)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCCCCCC----CCHHHHHHHHHHHHHHHHHHHTEEEHHHHHHHHHHHHH
T ss_pred ----------------CHHHHHHHHHHHHHcCCCHHHHHhccchHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 1233445566888888888755432 234557899999999999999999999999999999
Q ss_pred ccHHHHHHhccCcCEEEEecCccCCHHHHHHHHHHHc-CCcEEEEcCCCCcccccCCCChHHHHHHHHhcCCceEEEecc
Q 001127 464 TFPEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTR 542 (1148)
Q Consensus 464 ~~~~l~~~l~~~fd~IiIDEfQDftp~q~~lL~~L~~-~~~l~lvGD~~QsIy~frga~~~lf~~l~~~~~~~~~~~L~~ 542 (1148)
+++.+...+..+|++|+|||||||||.|+.+|..|++ +.++++|||++|+||+|+|+++..|..+.+.++....+.|+.
T Consensus 202 ~~~~~~~~~~~~~~~ilVDE~QD~~~~q~~ll~~l~~~~~~l~~vGD~~QsIy~frga~~~~~~~~~~~~~~~~~~~L~~ 281 (647)
T 3lfu_A 202 NKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQ 281 (647)
T ss_dssp HCHHHHHHHHHHCCEEEESSGGGCCHHHHHHHHHHHTTTCEEEEEECGGGCCCGGGTCCTTHHHHHHHHCTTCEEEEECB
T ss_pred hCHHHHHHHHhhCCEEEEECcccCCHHHHHHHHHHhcCCCEEEEEcCchhhhccccCCCHHHHHHHHHhCCCCeEEEccc
Confidence 9999998888999999999999999999999999996 568999999999999999999999999999998888999999
Q ss_pred CCCChhHHHHHHHhhhhhhhhhcccccccccCCCCceeEEecCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCcEEEEEec
Q 001127 543 NYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRR 622 (1148)
Q Consensus 543 nyRs~~~I~~~an~ll~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~E~~~Va~~I~~Lv~~~~~~g~~~~DIAVL~r~ 622 (1148)
||||++.|++++|.++.++..+.. +..+.....|..+.++.+.+..+|+++|++.|++++.. |++|+|||||+|+
T Consensus 282 nyRs~~~I~~~~n~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~~ia~~I~~l~~~----g~~~~diaVL~r~ 356 (647)
T 3lfu_A 282 NYRSTSNILSAANALIENNNGRLG-KKLWTDGADGEPISLYCAFNELDEARFVVNRIKTWQDN----GGALAECAILYRS 356 (647)
T ss_dssp CSSSCHHHHHHHHHHHTTCSSCCC-CCCBCSSCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHT----TCCGGGEEEEESS
T ss_pred CCCCCHHHHHHHHHHHHhcccccC-CccccCCCCCCceEEEecCChHHHHHHHHHHHHHHHHc----CCCccCEEEEEeC
Confidence 999999999999999988765442 33344444566789999999999999999999999886 9999999999999
Q ss_pred CcChHHHHHHHHHCCCCeEEc-CccccccHHHHHHHHHHHHhCCCCCCchHHHHHHHh-hhhhHHHHHHHHHHHHHHHhh
Q 001127 623 QVSGKVFQTAFRERKIPFNIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAF-LLLEKEEKKRVIDHIDKISTI 700 (1148)
Q Consensus 623 ~~~~~~l~~~L~~~gIP~~i~-~~~l~~~p~v~~i~slL~~~~~~~d~~~~~~llk~L-~~~~~~~~~~~id~Leny~~~ 700 (1148)
+.+...+...|.++||||++. +.+++++|+++.++++|+++.++++..++.+++++. .+... ..++.+.+++..
T Consensus 357 ~~~~~~l~~~l~~~~Ip~~~~~~~~~~~~~~v~~ll~~L~~~~~p~d~~~l~~~l~~p~~gi~~----~~l~~l~~~~~~ 432 (647)
T 3lfu_A 357 NAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIGD----RTLDVVRQTSRD 432 (647)
T ss_dssp GGGHHHHHHHHHHTTCCEEESSSCCGGGSHHHHHHHHHHHHHHCTTCHHHHHHHTTSSCCCCCH----HHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHCCCCEEEeCCCCccccHHHHHHHHHHHHHcCCCCHHHHHHHHhCcccCCCH----HHHHHHHHHHHh
Confidence 999999999999999999997 679999999999999999999999999999999873 23332 236778888888
Q ss_pred hccchHHHHhhhhhccccchhhhhhhHhhHHHHHHHHHHHHHHhhCCCHHHHHHHHHhhcHHHHHHHHhhhccccccccc
Q 001127 701 RKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLL 780 (1148)
Q Consensus 701 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~ 780 (1148)
.++.++.+........ ............+...+..+..... ..++.++++.+++......... . .. .
T Consensus 433 ~~~~~~~~l~~~~~~~---~l~~~~~~~l~~~~~~l~~~~~~~~-~~~~~~~~~~i~~~~g~~~~~~--~----~~---~ 499 (647)
T 3lfu_A 433 RQLTLWQACRELLQEK---ALAGRAASALQRFMELIDALAQETA-DMPLHVQTDRVIKDSGLRTMYE--Q----EK---G 499 (647)
T ss_dssp TTCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHTSHHHHHH--T----SC---S
T ss_pred cCCCHHHHHHHhhhcc---cCCHHHHHHHHHHHHHHHHHHHhhc-cCCHHHHHHHHHHhcCHHHHHh--h----hc---C
Confidence 8888766654321110 0000111112233334444433222 2456666666665432111110 0 00 0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhhhhhhccCCcccccccccchHHHHHHHHHhhhhhhhcccCCCCCCcEEEEcccccc
Q 001127 781 NEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSK 860 (1148)
Q Consensus 781 ~e~~q~~~vl~~lld~l~e~l~~~~~~~~~~~~~~~~~~~~~~~L~~f~~~L~~~~~~~~~~~ip~~~D~V~V~Tih~sK 860 (1148)
.+..+.++.+..+++.+.+|.... ......++..|++.+..... ....++..|+|+|||+|+||
T Consensus 500 ~~~~~~~~~l~~l~~~~~~~~~~~-------------~~~~~~~l~~fl~~~~l~~~---~~~~~~~~~~V~l~TiH~aK 563 (647)
T 3lfu_A 500 EKGQTRIENLEELVTATRQFSYNE-------------EDEDLMPLQAFLSHAALEAG---EGQADTWQDAVQLMTLHSAK 563 (647)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------------------CCSSHHHHHHHHHHHC-C---CSSCSSCCCCEEEEETGGGT
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcc-------------cccchhHHHHHHHHHhhhcc---ccccccCCCcEEEEeeeccc
Confidence 122334455555555555543211 00012347777776543321 22346678999999999999
Q ss_pred CCCCCEEEEeecCCCCCccccccCCccCcccccHHHHHHHHHHHHhcccceEEEEEEeecc---cccccCCchhHHhhhh
Q 001127 861 GLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDA---NWQLLQPSRFLKEIPH 937 (1148)
Q Consensus 861 GlE~~~VfV~Glneg~~P~~~~~~g~l~d~e~~l~EErrL~YVAlTRAk~~L~LSy~~~d~---~g~~~~PS~fl~~l~~ 937 (1148)
|+|||+|||+|+++|.||.....+ ....++|||||||||||||+++|||||+.... .++...||+||.+|++
T Consensus 564 GLEf~~Vfl~gl~eg~~P~~~~~~-----~~~~~eeErrL~YVa~TRAk~~L~ls~~~~~~~~g~~~~~~pSrfl~el~~ 638 (647)
T 3lfu_A 564 GLEFPQVFIVGMEEGMFPSQMSLD-----EGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPE 638 (647)
T ss_dssp TCCEEEEEECCCBTBTTTBTTCC-------CTTHHHHHHHHHHHHTTEEEEEEEEEEEEEEETTEEEECCBCHHHHHSCG
T ss_pred CccCCEEEEeCCcCCCCCCccccc-----CchhHHHHHHHHHHHHhHHhhheEEEEeccccccCCcCcCCCCccHHhhhH
Confidence 999999999999999999865322 23578999999999999999999999997642 3346789999999987
Q ss_pred hhH
Q 001127 938 HLR 940 (1148)
Q Consensus 938 ~f~ 940 (1148)
.+.
T Consensus 639 ~~~ 641 (647)
T 3lfu_A 639 ECV 641 (647)
T ss_dssp GGE
T ss_pred HHh
Confidence 653
No 5
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=100.00 E-value=8.5e-63 Score=653.63 Aligned_cols=638 Identities=22% Similarity=0.287 Sum_probs=414.2
Q ss_pred hhcCCHHHHHHhccCCCCCEEEEecCCCCC--------------C---CCCCCEEEEeccHHHHHHHHHHHHhhhccc--
Q 001127 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------G---ISPSNILAMTFTTAAASEMRDRIGSIVGKA-- 305 (1148)
Q Consensus 245 ~~~Ln~~Qr~aV~~~~~~~~lI~G~AGSGK--------------~---~~~~~ILvltft~~Aa~ei~~RL~~~l~~~-- 305 (1148)
...||++|++||. ..+++++|.|+||||| + ..+++||++||||+|+.+|++||...++..
T Consensus 8 ~~~~t~eQ~~~i~-~~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~~~ 86 (1232)
T 3u4q_A 8 DSTWTDDQWNAIV-STGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEKELV 86 (1232)
T ss_dssp --CCCHHHHHHHH-CCSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHh-CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHHHHhh
Confidence 4578999999995 4488999999999999 2 366899999999999999999999865421
Q ss_pred -------------cCCCceEechHHHHHHHHHHHHHHhcCCCCceecChHHHHHHHHHHHHHHHhhh-----HH---HHh
Q 001127 306 -------------TAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVRLLENEK-----IL---VVK 364 (1148)
Q Consensus 306 -------------~~~~v~V~Tfhs~a~rIl~~~~~~~~~~~~~~i~~~~~~~~~l~~il~~~~~~~-----~~---~~~ 364 (1148)
...++.|+|||+||+++++.++...++.+.|.++++.+...+..++++.+.... .. ...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~i~T~hsf~~~~l~~~~~~~~~~~~f~~~d~~~~~~l~~~~~~~~~e~~~~~~~~~f~~l~~ 166 (1232)
T 3u4q_A 87 QRPGSLHIRRQLSLLNRASISTLHSFCLQVLKKYYYLIDLDPGFRIADQTEGELIGDEVLDELFEDEYAKGEKAFFELVD 166 (1232)
T ss_dssp HSTTCHHHHHHHHHTTTSEEECHHHHHHHHHHHHGGGTTCCTTCEECCHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCcchHHHHHHHhccCCCeEEeHHHHHHHHHHhhHHhcCCCCCCeeCCHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 124689999999999999999999999999999888776655555544332210 00 000
Q ss_pred hhhcc-------------------------cccc--------------ccchhhhHHHHHH--H---HH----Hhhh---
Q 001127 365 RISTD-------------------------MLTT--------------DGHFGYMRASLFM--M---NA----MLFF--- 393 (1148)
Q Consensus 365 ~~~~d-------------------------~l~~--------------~~~f~~~~~~~~~--~---~~----~~~~--- 393 (1148)
.+..+ .+.. ...|......... . .. ....
T Consensus 167 ~~~~~~~d~~l~~li~~l~~~~~s~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 246 (1232)
T 3u4q_A 167 RYTTDRHDLDLQFLVKQVYEYSRSHPNPEAWLESFVHLYDVSEKSAIEELPFYQYVKEDIAMVLNGAKEKLLRALELTKA 246 (1232)
T ss_dssp HHSCSSCCHHHHHHHHHHHHHHTTSSSHHHHHHTTHHHHCCCTTCCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHccCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00000 0000 0000000000000 0 00 0000
Q ss_pred ----------------hhhhhH--HhhhHHHHH----------------------------------hhHHHHHH--cCC
Q 001127 394 ----------------SMSSFK--LCQYNKFER----------------------------------DGMDVAKA--SGK 419 (1148)
Q Consensus 394 ----------------~~~~~~--~~~f~~~l~----------------------------------~~i~~~k~--~~~ 419 (1148)
.+.... ...|..... +.+..++. ...
T Consensus 247 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~k~~~~~l~~~~f~~ 326 (1232)
T 3u4q_A 247 PGGPAPRADNFLDDLAQIDELIQHQDDFSELYKRVPAVSFKRAKAVKGDEFDPALLDEATDLRNGAKKLLEKLKTDYFTR 326 (1232)
T ss_dssp --------CHHHHHHHHHHHHHHTTTCHHHHHHHHHHTC------------CHHHHHHTTHHHHHHHHHHHHHHHHHSSS
T ss_pred cCChHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHhccccccCcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 000000 000110000 00000000 111
Q ss_pred CHHHHHhhH----------HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhccc--------HHHHHHhccCcCEEEE
Q 001127 420 TPAEFRKIG----------DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF--------PEVFQEYQDSWKAIIV 481 (1148)
Q Consensus 420 ~~e~l~~~~----------~~~~~~iy~~Y~~~L~~~~~iD~~Dll~~a~~lL~~~--------~~l~~~l~~~fd~IiI 481 (1148)
+++.+.... ..+...+++.|++.+++++.+||+|++..+..+|... +.+...++.+|++|+|
T Consensus 327 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~k~~~~~lDF~Dl~~~a~~lL~~~~~~~~~~p~~v~~~~~~~~~~IlV 406 (1232)
T 3u4q_A 327 SPEQHLKSLAEMKPVIETLVQLVISYGKRFEAAKQEKSIIDFSDLEHYCLAILTAENDKGEREPSEAARFYQEQFHEVLV 406 (1232)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEECHHHHHHHHHHHHBCCCC---CCBCHHHHHHHHHCSEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHhhhcccccccChHHHHHHHHhCCCEEEE
Confidence 222221110 1223578899999999999999999999999999875 6788889999999999
Q ss_pred ecCccCCHHHHHHHHHHHc----CCcEEEEcCCCCcccccCCCChHHHHHHHHhcCC-----ceEEEeccCCCChhHHHH
Q 001127 482 DEFQDTSAMQYSLLQILAS----HNRITIVGDDDQSIFSFNGADISGFDSFRKDFLN-----YKEIRLTRNYRSTRCIVE 552 (1148)
Q Consensus 482 DEfQDftp~q~~lL~~L~~----~~~l~lvGD~~QsIy~frga~~~lf~~l~~~~~~-----~~~~~L~~nyRs~~~I~~ 552 (1148)
||||||||.|+.||..|+. +.++++|||++|+||+|||+++.+|..+.+.|+. ...+.|..||||++.|++
T Consensus 407 DEfQDt~~~Q~~il~~L~~~~~~~~~l~~vGD~~QsIY~FRgAd~~~f~~~~~~~~~~~~~~~~~i~L~~NyRS~~~Il~ 486 (1232)
T 3u4q_A 407 DEYQDTNLVQESILQLVTSGPEETGNLFMVGDVKQSIYRFRLAEPLLFLSKYKRFTESGEGTGRKIDLNKNFRSRADILD 486 (1232)
T ss_dssp SSGGGCCHHHHHHHHHHSCSCTTSSCEEEEECGGGCCCTTTTCCTHHHHHHHHHSBSSCTTSCEEEEECEESSSCHHHHH
T ss_pred EccccCCHHHHHHHHHHhcCCCCCCcEEEEeCchHHhHhccCCCHHHHHHHHHHhhhhcCCCCcEeECCCCCCCChHHHH
Confidence 9999999999999999987 4689999999999999999999999999888852 277899999999999999
Q ss_pred HHHhhhhhhhhhc------cc-cccc----ccCCCCceeEEecC---------------CCHHHHHHHHHHHHHHHhhcC
Q 001127 553 AASSLIQHNVKRC------QL-KNVQ----TDNSHGSKIIIKEC---------------HNEDAQCAFIIDKILEHASNG 606 (1148)
Q Consensus 553 ~an~ll~~~~~~~------~~-~~~~----~~~~~g~~i~l~~~---------------~~~~~E~~~Va~~I~~Lv~~~ 606 (1148)
++|.++.+..... .. .... .....+..+.++.+ .+...|+.+||+.|++++.++
T Consensus 487 ~~n~lf~~~~~~~~~~i~y~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~iA~~I~~l~~~~ 566 (1232)
T 3u4q_A 487 STNFLFKQLMGGKIGEVDYDEQAELKLGAAYPDNDETETELLLIDNAEDTDASEEAEELETVQFEAKAIAKEIRKLISSP 566 (1232)
T ss_dssp HHHHHHHTTSCHHHHSSCCCTTTSCEECCCCCCCSSCSEEEEEEC-------------CHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHhhccccccccCCCchhhhcccCccCccCCCCCeEEEEecCCccccccccccccccHHHHHHHHHHHHHHHHhcC
Confidence 9999987652110 00 0000 00112333555443 456679999999999999762
Q ss_pred ---------CCCCCCCCcEEEEEecCcChHHHHHHHHHCCCCeEEc-CccccccHHHHHHHHHHHHhCCCCCCchHHHHH
Q 001127 607 ---------PASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVF 676 (1148)
Q Consensus 607 ---------~~~g~~~~DIAVL~r~~~~~~~l~~~L~~~gIP~~i~-~~~l~~~p~v~~i~slL~~~~~~~d~~~~~~ll 676 (1148)
..++++|+|||||+|++.+...+..+|.++||||+++ +..++++|+|+.++++|+++.+++++.++.+++
T Consensus 567 ~~v~d~~~~~~r~~~~~DIAIL~R~~~~~~~i~~~L~~~gIP~~~~~~~~~~~~~eV~~llalL~~i~np~d~~~l~~~L 646 (1232)
T 3u4q_A 567 FKVYDGKKKTHRNIQYRDIVILLRSMPWAPQIMEELRAQGIPVYANLTSGYFEAVEVAVALSVLKVIDNPYQDIPLASVL 646 (1232)
T ss_dssp CCBC---CCCCBCCCSTTEEEEESSSSSHHHHHHHHHHSSSCEEECCCSCCTTSHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred CceecccccccCCCCcCCEEEEEECchhHHHHHHHHhHCCCCEEEeCCCCcccCHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence 1126899999999999889999999999999999998 679999999999999999999999999999999
Q ss_pred HH-hhhhhHHHHHHHHHHHHHHHhhhccchHHHHhhhhhccccchhhhhhhHhhHHHHHHHHHHHHHHhhCCCHHHHHHH
Q 001127 677 KA-FLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITS 755 (1148)
Q Consensus 677 k~-L~~~~~~~~~~~id~Leny~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~l~~~~~~~~~~~~~~~~ 755 (1148)
++ +.++.... +..+.++. .+..++..+......... . .........+...+..++.... ..++.++++.
T Consensus 647 ~sp~~gl~~~~----l~~l~~~~--~~~~~~~~l~~~~~~~~~--~-~~~~~~~~~~~~~l~~~r~~~~-~~~~~~ll~~ 716 (1232)
T 3u4q_A 647 RSPIVGADENE----LSLIRLEN--KKAPYYEAMKDYLAAGDR--S-DELYQKLNTFYGHLQKWRAFSK-NHSVSELIWE 716 (1232)
T ss_dssp HSTTTCCCHHH----HHHHHTTC--SSSCHHHHHHHHHHHSCT--T-CHHHHHHHHHHHHHHHHHHHHH-HSCHHHHHHH
T ss_pred cCcccCCCHHH----HHHHHhhc--cCCCHHHHHHHHHhcCcc--h-HHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHH
Confidence 98 44444333 44444332 122333333221100000 0 0001122344555555554433 2346666666
Q ss_pred HHhhcHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHHHhhhhhhhccCCcccccccccchHHHHHHHHHhh
Q 001127 756 VANMVPQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISER 835 (1148)
Q Consensus 756 l~~~~~~~~l~~~~~~~~~~~~~~~~e~~q~~~vl~~lld~l~e~l~~~~~~~~~~~~~~~~~~~~~~~L~~f~~~L~~~ 835 (1148)
+++.... ....... . ...+-..-+..+++.+.+|.+.. ..++..|++++...
T Consensus 717 i~~~~~~---~~~l~~~--~------~g~~r~~nl~~L~~~a~~~~~~~-----------------~~~L~~Fl~~l~~~ 768 (1232)
T 3u4q_A 717 VYRDTKY---MDYVGGM--P------GGKQRQANLRVLYDRARQYESTA-----------------FRGLFRFLRFIERM 768 (1232)
T ss_dssp HHHHHCH---HHHHTTS--T------THHHHHHHHHHHHHHHHHHTTSS-----------------CCSHHHHHHHHHHH
T ss_pred HHHhcCH---HHHHhhC--C------chHHHHHHHHHHHHHHHHHHhcc-----------------cccHHHHHHHHHHH
Confidence 6543211 1110000 0 11122333555777766664322 46899999998754
Q ss_pred hhh----hhcccCCCCCCcEEEEccccccCCCCCEEEEeecCCCCCccccccCCccCc----------------------
Q 001127 836 ETE----HFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE---------------------- 889 (1148)
Q Consensus 836 ~~~----~~~~~ip~~~D~V~V~Tih~sKGlE~~~VfV~Glneg~~P~~~~~~g~l~d---------------------- 889 (1148)
... ......++..|+|+|||+|+|||+|||+|||+|+++|..|. ...++++.+
T Consensus 769 ~~~~~~~~~~~~~~~~~d~V~ImTIH~SKGLEfpvVfl~gl~~~~~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 847 (1232)
T 3u4q_A 769 QERGDDLGTARGLSEQEDVVRLMTIHSSKGLEFPVVFVAGLGRNFNMM-DLNKSYLLDKELGFGTKYIHPQLRISYPTLP 847 (1232)
T ss_dssp HHTTC----------CCCCEEEEEGGGTTTCCEEEEEEECTTSBCCCT-TSCSSEEEETTTEEEECEEETTTTEEECCHH
T ss_pred HhccccccccccccCCCCcEEEecchhccCCCCCEEEEccccccCCCc-CCCCCeeeccccCcCcceecchhccccCcHH
Confidence 321 11123457789999999999999999999999999995443 221111100
Q ss_pred --------ccccHHHHHHHHHHHHhcccceEEEEEEeeccc
Q 001127 890 --------KGTSVEEERRLLYVAMTRARKKLFILYVMMDAN 922 (1148)
Q Consensus 890 --------~e~~l~EErrL~YVAlTRAk~~L~LSy~~~d~~ 922 (1148)
..+.+.||+||||||||||+++||||++..+.+
T Consensus 848 ~~~~~~~~~~e~~~EE~RLLYVAlTRAk~~L~l~~~~~~~~ 888 (1232)
T 3u4q_A 848 LIAMKKKMRRELLSEELRVLYVALTRAKEKLFLIGSCKDHQ 888 (1232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEECSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccEEEEEEEeCchh
Confidence 124678999999999999999999999976643
No 6
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=100.00 E-value=5.2e-53 Score=558.59 Aligned_cols=423 Identities=17% Similarity=0.269 Sum_probs=285.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhcccH--HHHHHhccCcCEEEEecCccCCHHHHHHHHHHHc---CCcEE
Q 001127 431 IGAAILENYNGILRSCNALDYHDLISCSVKLLSTFP--EVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS---HNRIT 505 (1148)
Q Consensus 431 ~~~~iy~~Y~~~L~~~~~iD~~Dll~~a~~lL~~~~--~l~~~l~~~fd~IiIDEfQDftp~q~~lL~~L~~---~~~l~ 505 (1148)
....+++.|++.+++++.+||+|++..+..+|.+.+ .+...++.+|++|+|||||||||.||.||..|.. +.+++
T Consensus 331 ~~~~~~~~y~~~k~~~~~ldf~Dll~~~~~~L~~~~~~~l~~~~~~r~~~ilVDEfQDtn~~Q~~il~~L~~~~~~~~l~ 410 (1180)
T 1w36_B 331 ALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALL 410 (1180)
T ss_dssp HHHHHHHHHHHHHHHHTEECHHHHHHHHHHHHHSTTHHHHHHHHHHHCSEEEECSGGGCCHHHHHHHHHHHTTCTTCEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHccCchHHHHHHHHhCCCEEEEECCccCCHHHHHHHHHHHcCCCCCeEE
Confidence 446789999999999999999999999999998754 7888899999999999999999999999999986 35899
Q ss_pred EEcCCCCcccccCCCChHHHHHHHHhcCCceEEEeccCCCChhHHHHHHHhhhhhhhhhc-----ccccc----------
Q 001127 506 IVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRC-----QLKNV---------- 570 (1148)
Q Consensus 506 lvGD~~QsIy~frga~~~lf~~l~~~~~~~~~~~L~~nyRs~~~I~~~an~ll~~~~~~~-----~~~~~---------- 570 (1148)
+|||++|+||+|||+++..|..+.+.+ ...+.|..||||++.|++++|.++..+.... +..+.
T Consensus 411 ~VGD~kQSIY~FRGAd~~~~~~~~~~~--~~~~~L~~NyRS~~~Il~~~N~lf~~~~~~~~~~~i~~~~~~~~~~~~~~~ 488 (1180)
T 1w36_B 411 LIGDPKQAIYAFRGADIFTYMKARSEV--HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALR 488 (1180)
T ss_dssp EEECGGGCCCGGGTCCHHHHHHHHHHC--CCEEECCEETTSCHHHHHHHHHHHHSSSSTTSSTTSCCCCCEECGGGTTEE
T ss_pred EEECCccccccCcCCCHHHHHHHHHhc--CCceeCCCCcCCcHHHHHHHHHHHhccccccccCCCCcccccccccccccc
Confidence 999999999999999998777766654 3578999999999999999999987653221 00010
Q ss_pred cccCCC-CceeEEecCCC--------HHHHHHHHHHHHHHHhhcCC-----------CCCCCCCcEEEEEecCcChHHHH
Q 001127 571 QTDNSH-GSKIIIKECHN--------EDAQCAFIIDKILEHASNGP-----------ASICSYGSIAILYRRQVSGKVFQ 630 (1148)
Q Consensus 571 ~~~~~~-g~~i~l~~~~~--------~~~E~~~Va~~I~~Lv~~~~-----------~~g~~~~DIAVL~r~~~~~~~l~ 630 (1148)
+..... ...+.++...+ ...|+++||++|.+++..+. .+|++|+|||||+|++.+...+.
T Consensus 489 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ea~~iA~~I~~l~~~~~~~~~~~~~~~~~~~~~~~DIAIL~R~~~~~~~i~ 568 (1180)
T 1w36_B 489 FVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVR 568 (1180)
T ss_dssp EEETTEEECSEEEEECCSSCCCTTHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTEEEECCGGGEEEEESSHHHHHHHH
T ss_pred cccCCCCCCCeeEeecCCCccCcchHHHHHHHHHHHHHHHHHHhcccccceecCCcccCCCCcccEEEEeecchHHHHHH
Confidence 000111 11255543322 24689999999999986310 13789999999999988899999
Q ss_pred HHHHHCCCCeE-Ec-CccccccHHHHHHHHHHHHhCCCCCCchHHHHHHH-hhhhhHHHHHHHHHHHHHHHhhhccchHH
Q 001127 631 TAFRERKIPFN-IH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKA-FLLLEKEEKKRVIDHIDKISTIRKCSFIS 707 (1148)
Q Consensus 631 ~~L~~~gIP~~-i~-~~~l~~~p~v~~i~slL~~~~~~~d~~~~~~llk~-L~~~~~~~~~~~id~Leny~~~~gi~~~~ 707 (1148)
.+|.++||||. ++ +..++++|+|+.++++|+++.++.+..++.+++++ +++..... ++.+.+ +...|.
T Consensus 569 ~~L~~~gIP~~~~~~~~~~~~~~ev~~llalL~~l~~p~d~~~l~~~L~sp~~g~~~~~----l~~l~~-----~~~~~~ 639 (1180)
T 1w36_B 569 DALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALD----IETLNN-----DEHAWD 639 (1180)
T ss_dssp HHHHTTTCCEEETTCCCBGGGSSHHHHHHHHHHHHTCTTSHHHHHHHHHSGGGTCCHHH----HHHHHH-----CHHHHH
T ss_pred HHHHHCCCCEEEccCCCCcccCHHHHHHHHHHHHHHCcCChHHHHHHHhccccCCCHHH----HHHHhc-----CHHHHH
Confidence 99999999995 66 68999999999999999999999999999999998 44444332 222322 101111
Q ss_pred HHhhhhhccccchhhhhhhHhhHHHHHHHHHHHHHHhhCCCHHHHHHHHHhhcHHHHHHHHhhhcccccccccccchhHH
Q 001127 708 AACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFDGGKLLNEDNDLR 787 (1148)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~e~~q~~ 787 (1148)
.+.+ .+..+...+.. ..+..+++.++.... +...... . .++ .+..
T Consensus 640 ~~~~-----------------------~~~~~~~~~~~-~~~~~~l~~l~~~~~--~~~~l~~-~-~~g-------~~~~ 684 (1180)
T 1w36_B 640 VVVE-----------------------EFDGYRQIWRK-RGVMPMLRALMSARN--IAENLLA-T-AGG-------ERRL 684 (1180)
T ss_dssp HHHH-----------------------HHHHHHHHHHH-HCHHHHHHHHHHHTT--HHHHHHH-S-SSH-------HHHH
T ss_pred HHHH-----------------------HHHHHHHHHHh-cCHHHHHHHHHHhcC--HHHHHhc-C-Ccc-------HHHH
Confidence 1111 01111111111 122223333222111 0000000 0 000 0111
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccCCcccccccccchHHHHHHHHHhhhhhh-----h-cccCCCCCCcEEEEccccccC
Q 001127 788 SVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEH-----F-RTQRHDNENSVTLTTIHQSKG 861 (1148)
Q Consensus 788 ~vl~~lld~l~e~l~~~~~~~~~~~~~~~~~~~~~~~L~~f~~~L~~~~~~~-----~-~~~ip~~~D~V~V~Tih~sKG 861 (1148)
..+ ..+.+++... . .. ..++..|+++|....... . ....++..|+|+|||||+|||
T Consensus 685 ~nl----~~l~ell~~~-~------------~~-~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~d~V~ImTIHkSKG 746 (1180)
T 1w36_B 685 TDI----LHISELLQEA-G------------TQ-LESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKG 746 (1180)
T ss_dssp HHH----HHHHHHHHHH-H------------TT-CSCHHHHHHHHHHHHHSCCCCSTTBCCCCTTGGGSEEEEETTTTSS
T ss_pred HHH----HHHHHHHHHH-H------------hh-cCCHHHHHHHHHHHhhccCCCchhhhhcCcCccCeEEEEEEeccCC
Confidence 111 2223333221 0 00 125777888887543211 0 112345678999999999999
Q ss_pred CCCCEEEEeecCCCCCccc-----cccCC---cc--Cc--------ccccHHHHHHHHHHHHhcccceEEEEEEee
Q 001127 862 LEWDIVFVAKANETEIPLV-----HEFNG---AV--NE--------KGTSVEEERRLLYVAMTRARKKLFILYVMM 919 (1148)
Q Consensus 862 lE~~~VfV~Glneg~~P~~-----~~~~g---~l--~d--------~e~~l~EErrL~YVAlTRAk~~L~LSy~~~ 919 (1148)
+|||+|||+|++++ |.. +...+ .+ .. ..+.++||+||+|||||||+++|||+|+..
T Consensus 747 LEfpvVfl~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~Ee~RLlYVAlTRAk~~L~l~~~~~ 820 (1180)
T 1w36_B 747 LEYPLVWLPFITNF--RVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPL 820 (1180)
T ss_dssp CCEEEEEETTTTCC--CCCCSCEEECTTTCCEEEESSCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCC
T ss_pred CcCCEEEEeccccC--CCCCCCeeecCCCcceeecCCCcHHHHHHHHHHHHHHHhhHHhhhhcchhhheEEEeecc
Confidence 99999999999984 321 11110 01 00 123578999999999999999999999865
No 7
>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.25 PDB: 3k70_C*
Probab=100.00 E-value=3.8e-31 Score=346.89 Aligned_cols=331 Identities=15% Similarity=0.180 Sum_probs=221.7
Q ss_pred CCceeEEecCCCHHHHHHHHHHHHHHHhh-cCCCCCCCCCcEEEEEec-CcChHHHHHHHHHC---C-CCeEEc-Ccccc
Q 001127 576 HGSKIIIKECHNEDAQCAFIIDKILEHAS-NGPASICSYGSIAILYRR-QVSGKVFQTAFRER---K-IPFNIH-GVAFY 648 (1148)
Q Consensus 576 ~g~~i~l~~~~~~~~E~~~Va~~I~~Lv~-~~~~~g~~~~DIAVL~r~-~~~~~~l~~~L~~~---g-IP~~i~-~~~l~ 648 (1148)
.|..|.++.+.+..+|+++|+..|++++. + .|++|+||||++|+ +.|...|+.+|.++ | |||++. +.+++
T Consensus 370 ~~~~I~i~~a~s~~~Eae~Ia~~I~~l~~~~---~g~~~~DIAVL~rd~~~~s~~ie~~f~~~~~~~~IPy~i~~g~~~~ 446 (1122)
T 1w36_C 370 LDSSITFHVCHSPQREVEVLHDRLLAMLEED---PTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQ 446 (1122)
T ss_dssp TCCSSEEEEESSHHHHHHHHHHHHHHHHHHS---TTCCGGGEEEEESCHHHHHHHHHHHTSCCSSTTCCCCEECSEETGG
T ss_pred CCCcEEEEecCCHHHHHHHHHHHHHHHHHhC---CCCCcccEEEECCCHHHHHHHHHHHHhhCccCCccceEEcccchhh
Confidence 46679999999999999999999999983 4 59999999999999 88999999999999 8 999997 68999
Q ss_pred ccHHHHHHHHHHHHhCCCCCCchHHHHHHH-hh----hhhHHHHHHHHHHHHHHHhhhccch------------------
Q 001127 649 RKKVVRAIIAMLRTTLPGCDDGPYRRVFKA-FL----LLEKEEKKRVIDHIDKISTIRKCSF------------------ 705 (1148)
Q Consensus 649 ~~p~v~~i~slL~~~~~~~d~~~~~~llk~-L~----~~~~~~~~~~id~Leny~~~~gi~~------------------ 705 (1148)
++|++++++++|+++.++++..++.+++++ +. +.. ...++.+++++...|+++
T Consensus 447 ~~p~i~~llalL~L~~~~~d~~~llrlL~~P~~~~rfgi~----~~~l~~L~~~~~~~~ir~gld~~~r~~~~~~~~~~~ 522 (1122)
T 1w36_C 447 SHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDIT----EEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQH 522 (1122)
T ss_dssp GCHHHHHHHHHTTGGGCCCCHHHHHHHTTSHHHHHHTTCC----HHHHHHHHHHHHHHTCCSCSCHHHHHHTTCCCCSSS
T ss_pred hCHHHHHHHHHHHhccCCCCHHHHHHHHcChhhhhhcCCC----HHHHHHHHHHHHHhCCccCCCHHHHHhccCCccccC
Confidence 999999999999999999999999999887 22 222 344777888888777664
Q ss_pred -HHHHhh-hh-hcccc---c------hhhh-hh--hHhhHHHHHHHHHHHHHHh---hCCCHHHHHHHHHhhcHHHHHHH
Q 001127 706 -ISAACD-IF-GAKIS---G------TFKR-SQ--LTQGRKVLLTLEMISKLVR---REPSISAVITSVANMVPQKYLLE 767 (1148)
Q Consensus 706 -~~~~~~-~~-~~~~~---~------~~~~-~~--~~~~r~~~~~l~~l~~~~~---~~~~~~~~~~~l~~~~~~~~l~~ 767 (1148)
|....+ .. ..... + .+.. .. ......+...+..+..... ...+..++...+.+.+ ..
T Consensus 523 ~~~~~l~r~ll~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~l~~w~~~l~~~l-----~~ 597 (1122)
T 1w36_C 523 TWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML-----NA 597 (1122)
T ss_dssp SHHHHHHHHHHHHSSCSTTCCSSSCCCCTTSCSSTHHHHHHHHHHHHHHHHHHHHTSSCEEHHHHTTHHHHHH-----HH
T ss_pred CHHHhHHHHHhhhcccccchhhhccCCcchhccchHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-----HH
Confidence 110000 00 00000 0 0000 00 0001122222222222222 1122222211111110 00
Q ss_pred HhhhcccccccccccchhHHHHHHHHHHHHHHHHHhhhhhhhccCCcccccccccchHHHHHHHHHhhhhhhhcccCCCC
Q 001127 768 QRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHFRTQRHDN 847 (1148)
Q Consensus 768 ~~~~~~~~~~~~~~e~~q~~~vl~~lld~l~e~l~~~~~~~~~~~~~~~~~~~~~~~L~~f~~~L~~~~~~~~~~~ip~~ 847 (1148)
+.. .......+..++++.+..+++.+.++.. +...++..|.+++............ ..
T Consensus 598 ---l~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~-----------------~~~~~l~~fl~~L~~~l~~~~~~~~-~~ 655 (1122)
T 1w36_C 598 ---FFL-PDAETEAAMTLIEQQWQAIIAEGLGAQY-----------------GDAVPLSLLRDELAQRLDQERISQR-FL 655 (1122)
T ss_dssp ---HCC-CCSHHHHHHHHHHHHHHHHHHHHHHTCC-----------------CSEECHHHHHHHHHHHHHHCEECTT-TT
T ss_pred ---HhC-CCHhHHHHHHHHHHHHHHHHHHHHHcCC-----------------CCCCCHHHHHHHHHHHHhccccCCC-CC
Confidence 010 0000111223344444445444443211 1246899999999876554433221 23
Q ss_pred CCcEEEEccccccCCCCCEEEEeecCCCCCccccccCCc------c-CcccccHHHHHHHHHHHHhcccceEEEEEEeec
Q 001127 848 ENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGA------V-NEKGTSVEEERRLLYVAMTRARKKLFILYVMMD 920 (1148)
Q Consensus 848 ~D~V~V~Tih~sKGlE~~~VfV~Glneg~~P~~~~~~g~------l-~d~e~~l~EErrL~YVAlTRAk~~L~LSy~~~d 920 (1148)
.++|+|+|+|.+||+|||+|||+|+|||+||.....+++ + ......++||||+||||||||+++|||||+..+
T Consensus 656 ~~~V~l~Tlh~aKgLef~vVfllGlnEG~fP~~~~~~~~dll~~~l~~~dr~~~eEERrLfYvAltrA~~~L~LSy~~~~ 735 (1122)
T 1w36_C 656 AGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRS 735 (1122)
T ss_dssp SSSCEEECCCTTCCCCEEEEEEECCBTTTSSCCCCCCSSCHHHHSCCTTCCCHHHHHHHHHHHHHHHEEEEEEEEEECBC
T ss_pred CCeEEEeccccccCCCcCEEEEeCCCcccCCCCCCCCcHHHhhcccCCCchhhhHHHHHHHHHHHHhhcCeEEEEEeCCc
Confidence 789999999999999999999999999999987765443 0 112346899999999999999999999999876
Q ss_pred -ccccccCCchhHHhhhhhhH
Q 001127 921 -ANWQLLQPSRFLKEIPHHLR 940 (1148)
Q Consensus 921 -~~g~~~~PS~fl~~l~~~f~ 940 (1148)
.+|+...||+||.+|...+.
T Consensus 736 ~~~g~~~~PSrfL~eL~~~l~ 756 (1122)
T 1w36_C 736 IQDNSERFPSVLVQELIDYIG 756 (1122)
T ss_dssp SSSCCBCCBCHHHHHHHHHHH
T ss_pred CCCCCcCCCCHHHHHHHHHHH
Confidence 57778899999999987663
No 8
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=99.94 E-value=9.4e-27 Score=290.49 Aligned_cols=151 Identities=13% Similarity=0.194 Sum_probs=111.0
Q ss_pred cCcCEEEEecCccCCHHHHHHHHHHHcCCcEEEEcCCCC-------cccccCCCChHHHHHHHHhcCCceEEEeccCCCC
Q 001127 474 DSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQ-------SIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRS 546 (1148)
Q Consensus 474 ~~fd~IiIDEfQDftp~q~~lL~~L~~~~~l~lvGD~~Q-------sIy~frga~~~lf~~l~~~~~~~~~~~L~~nyRs 546 (1148)
..||+|+|||+...++.+. |..|....++++|||++| ..+.+.|.+.++|.++.+.++......|+.||||
T Consensus 365 ~~Fd~vIIDEAsQ~~e~~~--lipL~~~~~~ILVGD~~QLpP~v~~~~a~~~gl~~SlferL~~~~~~~~v~~L~~qYRm 442 (646)
T 4b3f_X 365 SYFDVVVIDECAQALEASC--WIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTLTVQYRM 442 (646)
T ss_dssp TCCSEEEETTGGGSCHHHH--TTTGGGSSEEEEEECTTSCCCCCSCHHHHHTTTTCCHHHHHHHHHGGGTEEECCEESSS
T ss_pred ccCCEEEEcCccccchHHH--HhhccccceEEEcCCccccCceecchhhhhccccchHHHHHHHhcCCceeeecccccCC
Confidence 5799999999977766543 445667789999999999 3456778889999999999887777889999999
Q ss_pred hhHHHHHHHhhhhhhhhhccc----------ccccccCCCCceeEEec---------------CCCHHHHHHHHHHHHHH
Q 001127 547 TRCIVEAASSLIQHNVKRCQL----------KNVQTDNSHGSKIIIKE---------------CHNEDAQCAFIIDKILE 601 (1148)
Q Consensus 547 ~~~I~~~an~ll~~~~~~~~~----------~~~~~~~~~g~~i~l~~---------------~~~~~~E~~~Va~~I~~ 601 (1148)
++.|++|+|..++++.-.... +........+.++.++. ...+..|+..|+..|..
T Consensus 443 hp~I~~f~n~~fY~g~L~~~~~~~~~~~~~lp~~~~~~~~~~p~~f~d~~g~~~~~~~~~~~~s~~N~~EA~~V~~~v~~ 522 (646)
T 4b3f_X 443 HQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDTAGCGLFELEEEDEQSKGNPGEVRLVSLHIQA 522 (646)
T ss_dssp CHHHHHHHHHHHSTTCCEECTTTTTCCGGGSTTCCCCTTTTCSEEEEECTTSSCCCCC-----CCCCHHHHHHHHHHHHH
T ss_pred cHHHHhhhHHhhcCCccccCcchhhhhhccccccccccccCCceEEEecCCCccccccccCCccccCHHHHHHHHHHHHH
Confidence 999999999999876421100 00111111122222221 22356799999999999
Q ss_pred HhhcCCCCCCCCCcEEEEEecCcChHHHH
Q 001127 602 HASNGPASICSYGSIAILYRRQVSGKVFQ 630 (1148)
Q Consensus 602 Lv~~~~~~g~~~~DIAVL~r~~~~~~~l~ 630 (1148)
++.. |++++|||||+||++|...|+
T Consensus 523 L~~~----gv~~~dIgVItpYraQ~~~l~ 547 (646)
T 4b3f_X 523 LVDA----GVPARDIAVVSPYNLQVDLLR 547 (646)
T ss_dssp HHHH----TCCGGGEEEEESCHHHHHHHH
T ss_pred HHhc----CCCcCcEEEECCCHHHHHHHH
Confidence 9987 999999999999876654443
No 9
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=7.9e-25 Score=276.47 Aligned_cols=156 Identities=15% Similarity=0.172 Sum_probs=107.7
Q ss_pred ccCcCEEEEecCccCCHHHHHHHHHHHcCCcEEEEcCCCCc---cccc----CCCChHHHHHHHHhcCCceEEEeccCCC
Q 001127 473 QDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQS---IFSF----NGADISGFDSFRKDFLNYKEIRLTRNYR 545 (1148)
Q Consensus 473 ~~~fd~IiIDEfQDftp~q~~lL~~L~~~~~l~lvGD~~Qs---Iy~f----rga~~~lf~~l~~~~~~~~~~~L~~nyR 545 (1148)
...|++|+|||+|+++..+ .++..+....++++|||++|. +++. .|....+|.++... +...+.|+.|||
T Consensus 515 ~~~fd~viIDEA~q~~e~~-~li~l~~~~~~lilvGD~~QL~pvv~s~~a~~~gl~~slferl~~~--~~~~~~L~~qYR 591 (802)
T 2xzl_A 515 DTKFRTVLIDESTQASEPE-CLIPIVKGAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLISL--GHVPIRLEVQYR 591 (802)
T ss_dssp CSCCSEEEETTGGGSCHHH-HHHHHTTTBSEEEEEECTTSCCCCCCCHHHHHTTTTCCHHHHHHHT--TCCCEECCEECS
T ss_pred hccCCEEEEECccccchHH-HHHHHHhCCCEEEEEeCccccCCeechhhhhhcCCchhHHHHHHhc--CCCceEeeeecC
Confidence 4489999999999999776 455544456799999999993 3321 13344677777543 234578999999
Q ss_pred ChhHHHHHHHhhhhhhhhhccc----ccc----cccCCCCceeEEecC------------CCHHHHHHHHHHHHHHHhhc
Q 001127 546 STRCIVEAASSLIQHNVKRCQL----KNV----QTDNSHGSKIIIKEC------------HNEDAQCAFIIDKILEHASN 605 (1148)
Q Consensus 546 s~~~I~~~an~ll~~~~~~~~~----~~~----~~~~~~g~~i~l~~~------------~~~~~E~~~Va~~I~~Lv~~ 605 (1148)
|++.|++|+|.+++++...... ... ......+.++.++.. ..+..|++.|++.|..++..
T Consensus 592 m~p~I~~f~n~~fY~g~L~~~~~~~~r~~~~~~~~~~~~~~p~~f~~~~g~~~~~~~~~s~~N~~EA~~V~~~v~~L~~~ 671 (802)
T 2xzl_A 592 MNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWPIRGIPMMFWANYGREEISANGTSFLNRIEAMNCERIITKLFRD 671 (802)
T ss_dssp SCHHHHHHHHHHHSTTCCEESSCTTTTCCTTCCCCCSSTTCCEEEEECCCCCEECTTSSSEECHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHhcCCccccCCchhhhccccccCCCCCCCCCEEEEEcCCceeecCCCCCcCCHHHHHHHHHHHHHHHHc
Confidence 9999999999999876422100 000 011111222333221 13578999999999999876
Q ss_pred CCCCCCCCCcEEEEEecCcChHHHHHHHHH
Q 001127 606 GPASICSYGSIAILYRRQVSGKVFQTAFRE 635 (1148)
Q Consensus 606 ~~~~g~~~~DIAVL~r~~~~~~~l~~~L~~ 635 (1148)
|+.++|||||+|+++|...|++.|.+
T Consensus 672 ----g~~~~~IgVItpy~~Q~~~I~~~L~~ 697 (802)
T 2xzl_A 672 ----GVKPEQIGVITPYEGQRAYILQYMQM 697 (802)
T ss_dssp ----TCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred ----CCCcccEEEEcccHHHHHHHHHHHHH
Confidence 89999999999998887777666644
No 10
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.92 E-value=1.4e-24 Score=260.16 Aligned_cols=150 Identities=13% Similarity=0.096 Sum_probs=102.8
Q ss_pred CcCEEEEecCccCCHHHHHHHHHHHc-CCcEEEEcCCCCcccccCCCChHHHHHHHHhcCCceEEEeccCCCChhHHHHH
Q 001127 475 SWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEA 553 (1148)
Q Consensus 475 ~fd~IiIDEfQDftp~q~~lL~~L~~-~~~l~lvGD~~QsIy~frga~~~lf~~l~~~~~~~~~~~L~~nyRs~~~I~~~ 553 (1148)
++++|+|||+|++++.++..|..+.. ++++++|||++|.++-+.|+....+..+... +....+.|+.|||++..|+++
T Consensus 128 ~~~~iiiDE~~~~~~~~~~~l~~~~~~~~~~~~vGD~~Ql~~v~~g~~~~~l~~~~~~-~~~~~~~L~~~~R~~~~I~~~ 206 (459)
T 3upu_A 128 KCRVLICDEVSMYDRKLFKILLSTIPPWCTIIGIGDNKQIRPVDPGENTAYISPFFTH-KDFYQCELTEVKRSNAPIIDV 206 (459)
T ss_dssp SCSEEEESCGGGCCHHHHHHHHHHSCTTCEEEEEECTTSCCCCCTTSCSCCCCGGGTC-TTEEEEECCCCCCCCCHHHHH
T ss_pred CCCEEEEECchhCCHHHHHHHHHhccCCCEEEEECCHHHcCCccCCcchHhHHHHHhc-CCCcEEeceeeeeCCcHHHHH
Confidence 68899999999999999988877765 6689999999998888888754433333222 345788999999999999999
Q ss_pred HHhhhhhhhhhcccccccccCCCCceeEEecCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCcEEEEEecCcChHHHHHHH
Q 001127 554 ASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAF 633 (1148)
Q Consensus 554 an~ll~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~E~~~Va~~I~~Lv~~~~~~g~~~~DIAVL~r~~~~~~~l~~~L 633 (1148)
++.+..... .+.....+..+...... +++...+..+...+.. +-.+.++|||+|+|.+...+...+
T Consensus 207 a~~lr~g~~-------~~~~~~~~~~v~~~~~~---~~~~~~i~~~~~~~~~----~~~~~~~aIL~rtN~~~~~~n~~l 272 (459)
T 3upu_A 207 ATDVRNGKW-------IYDKVVDGHGVRGFTGD---TALRDFMVNYFSIVKS----LDDLFENRVMAFTNKSVDKLNSII 272 (459)
T ss_dssp HHHHHTTCC-------CCCEEETTEEEEECCSS---SSHHHHHHHHHHHTTT----CSCCTTEEEEESSHHHHHHHHHHH
T ss_pred HHHHHcCCC-------cchhccCCCCeEecCch---HHHHHHHHHHHHhcCC----cchhhceEEEEehHhHHHHHHHHH
Confidence 999865432 11111222223332221 2233333333332222 234569999999999999999999
Q ss_pred HHCCCC
Q 001127 634 RERKIP 639 (1148)
Q Consensus 634 ~~~gIP 639 (1148)
....+|
T Consensus 273 r~~~~~ 278 (459)
T 3upu_A 273 RKKIFE 278 (459)
T ss_dssp HHHHTT
T ss_pred HHHhhc
Confidence 886666
No 11
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=99.91 E-value=9.6e-24 Score=266.21 Aligned_cols=153 Identities=14% Similarity=0.138 Sum_probs=103.1
Q ss_pred cCcCEEEEecC-ccCCHHHHHHHHHHHcCCcEEEEcCCCC---cccccC----CCChHHHHHHHHhcCCceEEEeccCCC
Q 001127 474 DSWKAIIVDEF-QDTSAMQYSLLQILASHNRITIVGDDDQ---SIFSFN----GADISGFDSFRKDFLNYKEIRLTRNYR 545 (1148)
Q Consensus 474 ~~fd~IiIDEf-QDftp~q~~lL~~L~~~~~l~lvGD~~Q---sIy~fr----ga~~~lf~~l~~~~~~~~~~~L~~nyR 545 (1148)
..|++|+|||+ |++.|. .++..+....++++|||++| .|+++. |-...+|.++... +...+.|+.|||
T Consensus 514 ~~fd~viIDEAsQ~~e~~--~li~l~~~~~~~ilvGD~~QLpPvv~s~~a~~~gl~~SlFerL~~~--g~~~~~L~~qYR 589 (800)
T 2wjy_A 514 MQFRSILIDESTQATEPE--CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 589 (800)
T ss_dssp CCCSEEEETTGGGSCHHH--HHHHHTTTBSEEEEEECTTSCCCCCCCHHHHHTTTTSCHHHHHHHT--TCCCEECCEECS
T ss_pred CCCCEEEEECCCCCCcHH--HHHHHHhcCCeEEEecccccCCCeecchhhhhcCcchHHHHHHHhC--CCCceEehhhcC
Confidence 47999999999 666564 34444444678999999999 355432 3344678877653 224578999999
Q ss_pred ChhHHHHHHHhhhhhhhhhcc----ccc----ccccCCCCceeEEecCC------------CHHHHHHHHHHHHHHHhhc
Q 001127 546 STRCIVEAASSLIQHNVKRCQ----LKN----VQTDNSHGSKIIIKECH------------NEDAQCAFIIDKILEHASN 605 (1148)
Q Consensus 546 s~~~I~~~an~ll~~~~~~~~----~~~----~~~~~~~g~~i~l~~~~------------~~~~E~~~Va~~I~~Lv~~ 605 (1148)
|++.|++|++.+++++.-... ... ..+....+..+.++... .+..|++.|++.|..++..
T Consensus 590 m~p~I~~f~n~~fY~g~L~~~~~~~~r~~~~~~~~~~~~~~p~~f~~~~g~e~~~~~~~S~~N~~Ea~~V~~~v~~L~~~ 669 (800)
T 2wjy_A 590 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKA 669 (800)
T ss_dssp SCHHHHHHHHHHHSTTCCEESSCSGGGSCTTCCCCCSSTTSCEEEEECCCCCEECSSBSCEECHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHhhHHHhcCCccccCCchhhhccccccccccCCCCCEEEEEcCCceeecCCCCcccCHHHHHHHHHHHHHHHHc
Confidence 999999999999987642110 000 00111122223332221 2578999999999999876
Q ss_pred CCCCCCCCCcEEEEEecCcChHHHHHHHH
Q 001127 606 GPASICSYGSIAILYRRQVSGKVFQTAFR 634 (1148)
Q Consensus 606 ~~~~g~~~~DIAVL~r~~~~~~~l~~~L~ 634 (1148)
|+.++||+||+|++.|...|.+.|.
T Consensus 670 ----g~~~~dIgVItPy~~Q~~~I~~~L~ 694 (800)
T 2wjy_A 670 ----GAKPDQIGIITPYEGQRSYLVQYMQ 694 (800)
T ss_dssp ----TCCGGGEEEECSCHHHHHHHHHHHH
T ss_pred ----CCCcccEEEEeccHHHHHHHHHHHH
Confidence 8999999999999877666555543
No 12
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=99.89 E-value=8e-23 Score=253.55 Aligned_cols=154 Identities=14% Similarity=0.126 Sum_probs=103.2
Q ss_pred cCcCEEEEecC-ccCCHHHHHHHHHHHcCCcEEEEcCCCCc---ccccC----CCChHHHHHHHHhcCCceEEEeccCCC
Q 001127 474 DSWKAIIVDEF-QDTSAMQYSLLQILASHNRITIVGDDDQS---IFSFN----GADISGFDSFRKDFLNYKEIRLTRNYR 545 (1148)
Q Consensus 474 ~~fd~IiIDEf-QDftp~q~~lL~~L~~~~~l~lvGD~~Qs---Iy~fr----ga~~~lf~~l~~~~~~~~~~~L~~nyR 545 (1148)
..|++|+|||+ |++.|.+ ++..+....++++|||++|. ++++. |-...+|.++... +...+.|+.|||
T Consensus 338 ~~fd~viIDEAsQ~~e~~~--li~l~~~~~~~ilvGD~~QL~p~v~~~~~~~~gl~~Slferl~~~--~~~~~~L~~qYR 413 (624)
T 2gk6_A 338 MQFRSILIDESTQATEPEC--MVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 413 (624)
T ss_dssp CCCSEEEETTGGGSCHHHH--HHHHTTTBSEEEEEECTTSCCCCCSCHHHHHHTTTSCHHHHHHHT--TCCCEECCEECS
T ss_pred CCCCEEEEecccccCcHHH--HHHHHhcCCeEEEecChhccCCeeecHHHHHcCCchhHHHHHHhc--CCCcEEehhhhC
Confidence 47999999999 7776653 34334445689999999994 44432 2334678777653 224578999999
Q ss_pred ChhHHHHHHHhhhhhhhhhccc----cc----ccccCCCCceeEEecC------------CCHHHHHHHHHHHHHHHhhc
Q 001127 546 STRCIVEAASSLIQHNVKRCQL----KN----VQTDNSHGSKIIIKEC------------HNEDAQCAFIIDKILEHASN 605 (1148)
Q Consensus 546 s~~~I~~~an~ll~~~~~~~~~----~~----~~~~~~~g~~i~l~~~------------~~~~~E~~~Va~~I~~Lv~~ 605 (1148)
|++.|++|++.+++++...... .. .......+..+.++.. ..+..|++.|++.|..+++.
T Consensus 414 ~~~~I~~~~n~~fY~~~L~~~~~~~~r~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~ 493 (624)
T 2gk6_A 414 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKA 493 (624)
T ss_dssp SCHHHHHHHHHHHSTTCCEESSCTGGGCCTTCCCCCSSTTCCEEEEECCCCEECCTTSSCCEEHHHHHHHHHHHHHHHTT
T ss_pred cChhHHhhhHHhhcCcccccCCchhhhcccccCCCCCCCCCCEEEEEcCCcceecCCCCCccCHHHHHHHHHHHHHHHHc
Confidence 9999999999998865421100 00 0011111222322221 12467899999999998876
Q ss_pred CCCCCCCCCcEEEEEecCcChHHHHHHHHH
Q 001127 606 GPASICSYGSIAILYRRQVSGKVFQTAFRE 635 (1148)
Q Consensus 606 ~~~~g~~~~DIAVL~r~~~~~~~l~~~L~~ 635 (1148)
|+.++|||||+|++.+...|...|..
T Consensus 494 ----g~~~~dIgVItpy~~Q~~~i~~~l~~ 519 (624)
T 2gk6_A 494 ----GAKPDQIGIITPYEGQRSYLVQYMQF 519 (624)
T ss_dssp ----TCCGGGEEEECSCHHHHHHHHHHHHH
T ss_pred ----CCCCCeEEEEcCCHHHHHHHHHHHHh
Confidence 89999999999998777776665544
No 13
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=99.84 E-value=1.2e-20 Score=195.64 Aligned_cols=88 Identities=16% Similarity=0.203 Sum_probs=70.9
Q ss_pred ccCCCChhHHHHHHHhhhhhhhhhcccccccccCCCCceeEEecCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCcEEEEE
Q 001127 541 TRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILY 620 (1148)
Q Consensus 541 ~~nyRs~~~I~~~an~ll~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~E~~~Va~~I~~Lv~~~~~~g~~~~DIAVL~ 620 (1148)
++||||+++|++++|.++.++. .+.+....|..|.+..+.+..+|+.+|++.|.+ ... | ++|||||+
T Consensus 2 ~~NYRSt~~Il~~An~li~~~~------~~~~~~~~G~~p~~~~~~~~~~e~~~i~~~I~~-~~~----g--~~~iAVL~ 68 (174)
T 3dmn_A 2 NASYRSTQQITDFTKEILVNGE------AVTAFDRQGDLPNVVVTPNFEAGVDQVVDQLAM-NDS----E--RDTTAIIG 68 (174)
T ss_dssp -CCCCCCHHHHHHHHTTSCC--------------CCCCCCEEEEESSHHHHHHHHHHHHHH-HHH----T--TCCEEEEE
T ss_pred CCCCCChHHHHHHHHHHhcCCC------cccCCCCCCCCCEEEEeCCHHHHHHHHHHHHHH-hcc----C--CCcEEEEe
Confidence 4799999999999999997653 122224456779999999999999999999998 544 4 79999999
Q ss_pred ecCcChHHHHHHHHHCCCCeE
Q 001127 621 RRQVSGKVFQTAFRERKIPFN 641 (1148)
Q Consensus 621 r~~~~~~~l~~~L~~~gIP~~ 641 (1148)
|++.+...+...|.+.|||+.
T Consensus 69 r~~~~~~~l~~~L~~~gi~~~ 89 (174)
T 3dmn_A 69 KSLAECEALTKALKARGEQVT 89 (174)
T ss_dssp SSHHHHHHHHHHHHTTTCCEE
T ss_pred cCHHHHHHHHHHHHHcCCcce
Confidence 999999999999999999874
No 14
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=99.69 E-value=6.4e-17 Score=197.57 Aligned_cols=134 Identities=19% Similarity=0.172 Sum_probs=85.0
Q ss_pred CcCEEEEecCccCCHHHHHHHHHHH-cCCcEEEEcCCCCcccccCCCChHHHHHHHHhcCCceEEEeccCCCCh--hHHH
Q 001127 475 SWKAIIVDEFQDTSAMQYSLLQILA-SHNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRST--RCIV 551 (1148)
Q Consensus 475 ~fd~IiIDEfQDftp~q~~lL~~L~-~~~~l~lvGD~~QsIy~frga~~~lf~~l~~~~~~~~~~~L~~nyRs~--~~I~ 551 (1148)
.+++|+|||++.++..++..|.... .++++++|||++|..+-..|. .|..+.+. ...+.|+.+||+. ..|+
T Consensus 279 ~~dvlIIDEasml~~~~~~~Ll~~~~~~~~lilvGD~~QL~~v~~g~---~~~~l~~~---~~~~~L~~~~R~~~~s~I~ 352 (574)
T 3e1s_A 279 PYDLLIVDEVSMMGDALMLSLLAAVPPGARVLLVGDTDQLPPVDAGL---PLLALAQA---APTIKLTQVYRQAAKNPII 352 (574)
T ss_dssp SCSEEEECCGGGCCHHHHHHHHTTSCTTCEEEEEECTTSCCCSSSCC---HHHHHHHH---SCEEECCCCCHHHHTCHHH
T ss_pred cCCEEEEcCccCCCHHHHHHHHHhCcCCCEEEEEecccccCCccCCc---HHHHHHhc---CCEEEcceeEeCCCccHHH
Confidence 6789999999999988665543333 366899999999987766665 34444442 3578999999998 6799
Q ss_pred HHHHhhhhhhhhhcccccccccCCCCceeEEecCCCHHHHHHHHHHHHHHHhhcCCCCCCC-CCcEEEEEecCcC---hH
Q 001127 552 EAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICS-YGSIAILYRRQVS---GK 627 (1148)
Q Consensus 552 ~~an~ll~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~E~~~Va~~I~~Lv~~~~~~g~~-~~DIAVL~r~~~~---~~ 627 (1148)
.+++.+....... .. + .+.+....+.++.+..+.+.+. |+. .+|+.||++.+.. +.
T Consensus 353 ~~a~~i~~g~~~~-----~~-----~-d~~~~~~~~~~~~~~~i~~~~~---------~~~~~~~~~VL~~~~~g~~gv~ 412 (574)
T 3e1s_A 353 QAAHGLLHGEAPA-----WG-----D-KRLNLTEIEPDGGARRVALMVR---------ELGGPGAVQVLTPMRKGPLGMD 412 (574)
T ss_dssp HHHHHHHTTCCCC-----CC-----B-TTEEEEECCSTTCHHHHHHHHH---------HTTSGGGCEEEESCSSSTTSHH
T ss_pred HHHHHHhCCCCcc-----cC-----C-CeEEEeCCCHHHHHHHHHHHHh---------ccCcccCeEEEEeecCCchhHH
Confidence 9998876543211 11 1 1334433444333444443333 233 4899999998643 34
Q ss_pred HHHHHHH
Q 001127 628 VFQTAFR 634 (1148)
Q Consensus 628 ~l~~~L~ 634 (1148)
.+...+.
T Consensus 413 ~lN~~l~ 419 (574)
T 3e1s_A 413 HLNYHLQ 419 (574)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 15
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.48 E-value=6.2e-13 Score=164.00 Aligned_cols=86 Identities=21% Similarity=0.203 Sum_probs=59.8
Q ss_pred CcCEEEEecCccCCHHHH-HHHHHHHcCCcEEEEcCCCCcccccCCC-------------ChHHHHHHHHhcCC------
Q 001127 475 SWKAIIVDEFQDTSAMQY-SLLQILASHNRITIVGDDDQSIFSFNGA-------------DISGFDSFRKDFLN------ 534 (1148)
Q Consensus 475 ~fd~IiIDEfQDftp~q~-~lL~~L~~~~~l~lvGD~~QsIy~frga-------------~~~lf~~l~~~~~~------ 534 (1148)
.+++|+|||++.++..++ .++..+..+++++++||++|..+-..|+ +...+..+.+.++.
T Consensus 262 ~~d~lIIDEAsml~~~~~~~Ll~~l~~~~~liLvGD~~QL~~V~~G~vl~dl~~~~~~g~~~~~~~~l~~~~~~~~~~~~ 341 (608)
T 1w36_D 262 HLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGT 341 (608)
T ss_dssp SCSEEEECSGGGCBHHHHHHHHHTCCTTCEEEEEECTTSGGGTSTTBCHHHHGGGGTTCCCHHHHHHHHHHSSSCCCCCS
T ss_pred CCCEEEEechhhCCHHHHHHHHHhCCCCCEEEEEcchhhcCCCCCCcHHHHHHHHHhccccHHHHHHHHHhcCccccccc
Confidence 678999999999986654 3444444467999999999976644433 33444444443321
Q ss_pred ---c-----eEEEeccCCCChhH--HHHHHHhhhhh
Q 001127 535 ---Y-----KEIRLTRNYRSTRC--IVEAASSLIQH 560 (1148)
Q Consensus 535 ---~-----~~~~L~~nyRs~~~--I~~~an~ll~~ 560 (1148)
. ..+.|+.+||+... |..+++.+...
T Consensus 342 ~~~~~~~~~~~~~L~~~~R~~~~s~I~~la~~i~~g 377 (608)
T 1w36_D 342 GTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRG 377 (608)
T ss_dssp TTTTHHHHTTEEECCCCCCSSCCTTHHHHHHHHTSC
T ss_pred ccccccccccEEecceeeeeCCcchHHHHHHHHhcC
Confidence 0 26899999999865 99999887543
No 16
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=98.71 E-value=6.5e-08 Score=112.62 Aligned_cols=82 Identities=11% Similarity=0.015 Sum_probs=60.0
Q ss_pred CcCEEEEecCccCCHHHHHHHHHHHcCCcEEEEcCCCCcccccCCCChHHHHHHHHhcCCceEEEeccCCCChhHHHHHH
Q 001127 475 SWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRSTRCIVEAA 554 (1148)
Q Consensus 475 ~fd~IiIDEfQDftp~q~~lL~~L~~~~~l~lvGD~~QsIy~frga~~~lf~~l~~~~~~~~~~~L~~nyRs~~~I~~~a 554 (1148)
.++.|+|||++-..+..+..+..+.+..+++++||++|.-|-.++.....-..+. .+.......+..+||++..+..+.
T Consensus 234 ~~d~liiDE~sm~~~~~l~~l~~~~~~~~vilvGD~~Qlp~v~~~~~~~~~~~~~-~l~~~~~~~~~~SyR~p~dv~~lL 312 (446)
T 3vkw_A 234 QFKRLFIDEGLMLHTGCVNFLVEMSLCDIAYVYGDTQQIPYINRVTGFPYPAHFA-KLEVDEVETRRTTLRCPADVTHFL 312 (446)
T ss_dssp CCSEEEEETGGGSCHHHHHHHHHHTTCSEEEEEECTTSCCCCCCSTTCCCCHHHH-SCCCSEEEEECEESSCCHHHHHHH
T ss_pred cCCEEEEeCcccCCHHHHHHHHHhCCCCEEEEecCcccccCcccCCCccchhhhh-hcccCcEEEeeeEeCCCHHHHHHH
Confidence 4679999999999999888776777778999999999987765554322111221 121224556889999999999998
Q ss_pred Hhh
Q 001127 555 SSL 557 (1148)
Q Consensus 555 n~l 557 (1148)
+.+
T Consensus 313 s~l 315 (446)
T 3vkw_A 313 NQR 315 (446)
T ss_dssp HTT
T ss_pred Hhh
Confidence 765
No 17
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=94.54 E-value=0.069 Score=57.12 Aligned_cols=57 Identities=26% Similarity=0.155 Sum_probs=46.0
Q ss_pred hcCCHHHHHHhcc-CCCCCEEEEecCCCCC------------C---CCCCCEEEEeccHHHHHHHHHHHHhhh
Q 001127 246 QSLNDQQLEAACG-DMSTPLLIVAGPGSGK------------G---ISPSNILAMTFTTAAASEMRDRIGSIV 302 (1148)
Q Consensus 246 ~~Ln~~Qr~aV~~-~~~~~~lI~G~AGSGK------------~---~~~~~ILvltft~~Aa~ei~~RL~~~l 302 (1148)
..+++.|++++.. ..+.+++|.|+.|||| . ..+.++|++++|+..+.++.+++.+..
T Consensus 50 ~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 122 (245)
T 3dkp_A 50 QMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKIS 122 (245)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 4689999999832 2356799999999999 1 234589999999999999999998764
No 18
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=94.37 E-value=0.1 Score=54.84 Aligned_cols=59 Identities=17% Similarity=0.165 Sum_probs=47.2
Q ss_pred hhcCCHHHHHHhcc-CCCCCEEEEecCCCCC--------------CCCCCCEEEEeccHHHHHHHHHHHHhhhc
Q 001127 245 LQSLNDQQLEAACG-DMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASEMRDRIGSIVG 303 (1148)
Q Consensus 245 ~~~Ln~~Qr~aV~~-~~~~~~lI~G~AGSGK--------------~~~~~~ILvltft~~Aa~ei~~RL~~~l~ 303 (1148)
...+++.|++++.. -.+.+++|.|+.|||| .....++|++++|+..+.++.+++.+...
T Consensus 34 ~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 107 (224)
T 1qde_A 34 FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAF 107 (224)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhc
Confidence 34689999999842 2345799999999999 13456899999999999999999887643
No 19
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=94.06 E-value=0.11 Score=53.75 Aligned_cols=58 Identities=16% Similarity=0.053 Sum_probs=46.0
Q ss_pred hcCCHHHHHHhccC-CCCCEEEEecCCCCC--------------CCCCCCEEEEeccHHHHHHHHHHHHhhhc
Q 001127 246 QSLNDQQLEAACGD-MSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASEMRDRIGSIVG 303 (1148)
Q Consensus 246 ~~Ln~~Qr~aV~~~-~~~~~lI~G~AGSGK--------------~~~~~~ILvltft~~Aa~ei~~RL~~~l~ 303 (1148)
..+++.|++++..- .+.+++|.|+.|||| .....++|++++|+..+.++.+++.+...
T Consensus 24 ~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 96 (206)
T 1vec_A 24 EKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSK 96 (206)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHh
Confidence 36899999998432 345799999999999 12345899999999999999999877543
No 20
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=93.86 E-value=0.16 Score=54.65 Aligned_cols=58 Identities=21% Similarity=0.135 Sum_probs=46.4
Q ss_pred hcCCHHHHHHhcc-CCCCCEEEEecCCCCC--------------CCCCCCEEEEeccHHHHHHHHHHHHhhhc
Q 001127 246 QSLNDQQLEAACG-DMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASEMRDRIGSIVG 303 (1148)
Q Consensus 246 ~~Ln~~Qr~aV~~-~~~~~~lI~G~AGSGK--------------~~~~~~ILvltft~~Aa~ei~~RL~~~l~ 303 (1148)
..+++.|++++.. ..+.+++|.|+.|||| .....++|++++|+..+.++.+++.+...
T Consensus 64 ~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~ 136 (249)
T 3ber_A 64 TKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGS 136 (249)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhc
Confidence 4689999999842 2356799999999999 22345799999999999999998877643
No 21
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=93.61 E-value=0.094 Score=55.90 Aligned_cols=58 Identities=17% Similarity=0.168 Sum_probs=46.6
Q ss_pred hhcCCHHHHHHhccC-CCCCEEEEecCCCCC--------------CCCCCCEEEEeccHHHHHHHHHHHHhhh
Q 001127 245 LQSLNDQQLEAACGD-MSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASEMRDRIGSIV 302 (1148)
Q Consensus 245 ~~~Ln~~Qr~aV~~~-~~~~~lI~G~AGSGK--------------~~~~~~ILvltft~~Aa~ei~~RL~~~l 302 (1148)
...+++.|++++..- .+.+++|.|+.|||| ...+.++|++++|+..+.++.+++.+..
T Consensus 50 ~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 122 (237)
T 3bor_A 50 FEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALG 122 (237)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHh
Confidence 345899999998422 345799999999999 1245699999999999999999998764
No 22
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=93.52 E-value=0.13 Score=57.96 Aligned_cols=60 Identities=23% Similarity=0.205 Sum_probs=48.0
Q ss_pred hhcCCHHHHHHhccC--CCCCEEEEecCCCCC-------------CCCCCCEEEEeccHHHHHHHHHHHHhhhcc
Q 001127 245 LQSLNDQQLEAACGD--MSTPLLIVAGPGSGK-------------GISPSNILAMTFTTAAASEMRDRIGSIVGK 304 (1148)
Q Consensus 245 ~~~Ln~~Qr~aV~~~--~~~~~lI~G~AGSGK-------------~~~~~~ILvltft~~Aa~ei~~RL~~~l~~ 304 (1148)
...|++.|++++..- ...+++|.|+.|||| ...+.++|++++++..+.++.+++.+..+.
T Consensus 26 ~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 100 (367)
T 1hv8_A 26 FEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGN 100 (367)
T ss_dssp CCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCC
Confidence 346899999998432 225788899999999 224678999999999999999999887653
No 23
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=93.34 E-value=0.1 Score=54.05 Aligned_cols=57 Identities=19% Similarity=0.107 Sum_probs=46.0
Q ss_pred hcCCHHHHHHhcc-CCCCCEEEEecCCCCC------------C-----CCCCCEEEEeccHHHHHHHHHHHHhhh
Q 001127 246 QSLNDQQLEAACG-DMSTPLLIVAGPGSGK------------G-----ISPSNILAMTFTTAAASEMRDRIGSIV 302 (1148)
Q Consensus 246 ~~Ln~~Qr~aV~~-~~~~~~lI~G~AGSGK------------~-----~~~~~ILvltft~~Aa~ei~~RL~~~l 302 (1148)
..+++.|++++.. -.+.+++|.|+.|||| . ..+.++|++++|+..+.++.+++.+..
T Consensus 22 ~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 96 (207)
T 2gxq_A 22 TTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVA 96 (207)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHh
Confidence 4689999999842 2346799999999999 1 235689999999999999999988764
No 24
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=93.12 E-value=0.12 Score=53.70 Aligned_cols=56 Identities=20% Similarity=0.335 Sum_probs=43.7
Q ss_pred cCCHHHHHHhccC-CCCCEEEEecCCCCC-----------------CCCCCCEEEEeccHHHHHH-HHHHHHhhh
Q 001127 247 SLNDQQLEAACGD-MSTPLLIVAGPGSGK-----------------GISPSNILAMTFTTAAASE-MRDRIGSIV 302 (1148)
Q Consensus 247 ~Ln~~Qr~aV~~~-~~~~~lI~G~AGSGK-----------------~~~~~~ILvltft~~Aa~e-i~~RL~~~l 302 (1148)
.|++.|++++..- .+.+++|.|+.|||| ...+.++|++++++..+.+ +.+.+....
T Consensus 33 ~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 33 QLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred CchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 5899999998422 246799999999999 1236799999999999998 666666543
No 25
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=93.07 E-value=0.2 Score=53.49 Aligned_cols=57 Identities=18% Similarity=0.039 Sum_probs=45.8
Q ss_pred hcCCHHHHHHhcc-CCCCCEEEEecCCCCC-------------C------CCCCCEEEEeccHHHHHHHHHHHHhhh
Q 001127 246 QSLNDQQLEAACG-DMSTPLLIVAGPGSGK-------------G------ISPSNILAMTFTTAAASEMRDRIGSIV 302 (1148)
Q Consensus 246 ~~Ln~~Qr~aV~~-~~~~~~lI~G~AGSGK-------------~------~~~~~ILvltft~~Aa~ei~~RL~~~l 302 (1148)
..+++.|++++.. ..+.+++|.|+.|||| . ..+.++|++++|+..+.++.+.+.+..
T Consensus 50 ~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 126 (242)
T 3fe2_A 50 TEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYC 126 (242)
T ss_dssp CSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHH
Confidence 4589999999832 2356799999999999 1 235679999999999999998887764
No 26
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=92.97 E-value=0.21 Score=52.89 Aligned_cols=57 Identities=18% Similarity=0.110 Sum_probs=46.2
Q ss_pred hcCCHHHHHHhcc-CCCCCEEEEecCCCCC-------------C-----CCCCCEEEEeccHHHHHHHHHHHHhhh
Q 001127 246 QSLNDQQLEAACG-DMSTPLLIVAGPGSGK-------------G-----ISPSNILAMTFTTAAASEMRDRIGSIV 302 (1148)
Q Consensus 246 ~~Ln~~Qr~aV~~-~~~~~~lI~G~AGSGK-------------~-----~~~~~ILvltft~~Aa~ei~~RL~~~l 302 (1148)
..+++.|++++.. ..+.+++|.|+.|||| . ..+.++|++++|+..+.++.+++.+..
T Consensus 46 ~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 121 (236)
T 2pl3_A 46 RLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVG 121 (236)
T ss_dssp CBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 4689999998832 2356799999999999 0 235689999999999999999998764
No 27
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=92.78 E-value=0.19 Score=52.54 Aligned_cols=57 Identities=19% Similarity=0.189 Sum_probs=45.2
Q ss_pred hcCCHHHHHHhcc-CCCCCEEEEecCCCCC-------------C-CCCCCEEEEeccHHHHHHHHHHHHhhh
Q 001127 246 QSLNDQQLEAACG-DMSTPLLIVAGPGSGK-------------G-ISPSNILAMTFTTAAASEMRDRIGSIV 302 (1148)
Q Consensus 246 ~~Ln~~Qr~aV~~-~~~~~~lI~G~AGSGK-------------~-~~~~~ILvltft~~Aa~ei~~RL~~~l 302 (1148)
..+++.|++++.. -.+.+++|.++.|||| . ....++|++++|+..+.++.+++.+..
T Consensus 35 ~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (220)
T 1t6n_A 35 EHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 106 (220)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 3589999999842 2346799999999999 1 123489999999999999999887654
No 28
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=92.69 E-value=0.13 Score=54.33 Aligned_cols=56 Identities=21% Similarity=0.138 Sum_probs=46.0
Q ss_pred hcCCHHHHHHhcc-CCCCCEEEEecCCCCC------------C--------CCCCCEEEEeccHHHHHHHHHHHHhh
Q 001127 246 QSLNDQQLEAACG-DMSTPLLIVAGPGSGK------------G--------ISPSNILAMTFTTAAASEMRDRIGSI 301 (1148)
Q Consensus 246 ~~Ln~~Qr~aV~~-~~~~~~lI~G~AGSGK------------~--------~~~~~ILvltft~~Aa~ei~~RL~~~ 301 (1148)
..+++.|++++.. ..+.+++|.|+.|||| . ..+.++|++++|+..+.++.+++.+.
T Consensus 41 ~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 41 LKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 4789999999842 2356799999999999 1 15578999999999999999998875
No 29
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=92.67 E-value=0.19 Score=53.75 Aligned_cols=54 Identities=31% Similarity=0.266 Sum_probs=43.9
Q ss_pred cCCHHHHHHhcc-CCCCCEEEEecCCCCC--------CCCCCCEEEEeccHHHHHHHHHHHHh
Q 001127 247 SLNDQQLEAACG-DMSTPLLIVAGPGSGK--------GISPSNILAMTFTTAAASEMRDRIGS 300 (1148)
Q Consensus 247 ~Ln~~Qr~aV~~-~~~~~~lI~G~AGSGK--------~~~~~~ILvltft~~Aa~ei~~RL~~ 300 (1148)
.|++.|++++.. -..+.++|.|++|+|| .....+++++++++..+.++.+++.+
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~~~~~ 155 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGI 155 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHHHHGG
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 578999999842 2244588999999999 12367899999999999999999887
No 30
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=92.45 E-value=0.22 Score=52.74 Aligned_cols=57 Identities=25% Similarity=0.234 Sum_probs=45.9
Q ss_pred hcCCHHHHHHhcc-CCCCCEEEEecCCCCC--------------CCCCCCEEEEeccHHHHHHHHHHHHhhh
Q 001127 246 QSLNDQQLEAACG-DMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASEMRDRIGSIV 302 (1148)
Q Consensus 246 ~~Ln~~Qr~aV~~-~~~~~~lI~G~AGSGK--------------~~~~~~ILvltft~~Aa~ei~~RL~~~l 302 (1148)
..+++.|++++.. ..+.+++|.++.|||| .....++|++++|+..+.++.+++.+..
T Consensus 45 ~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 116 (230)
T 2oxc_A 45 ERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIG 116 (230)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 3589999999843 2246799999999999 1234689999999999999999998754
No 31
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=92.31 E-value=0.09 Score=57.68 Aligned_cols=56 Identities=18% Similarity=0.140 Sum_probs=44.5
Q ss_pred cCCHHHHHHhccCC-CCCEEEEecCCCCC------------CCCCCCEEEEeccHHHHHHHHHHHHhhh
Q 001127 247 SLNDQQLEAACGDM-STPLLIVAGPGSGK------------GISPSNILAMTFTTAAASEMRDRIGSIV 302 (1148)
Q Consensus 247 ~Ln~~Qr~aV~~~~-~~~~lI~G~AGSGK------------~~~~~~ILvltft~~Aa~ei~~RL~~~l 302 (1148)
.|++.|.+++.... ++..+|.|+.|||| .....++|++++|+..+.++.+++.+..
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~ 181 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYR 181 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhc
Confidence 78999999984222 34678889999999 1123489999999999999999998764
No 32
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=92.21 E-value=0.33 Score=55.78 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=47.3
Q ss_pred hhcCCHHHHHHhcc-CCCCCEEEEecCCCCC--------------CCCCCCEEEEeccHHHHHHHHHHHHhhhc
Q 001127 245 LQSLNDQQLEAACG-DMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASEMRDRIGSIVG 303 (1148)
Q Consensus 245 ~~~Ln~~Qr~aV~~-~~~~~~lI~G~AGSGK--------------~~~~~~ILvltft~~Aa~ei~~RL~~~l~ 303 (1148)
...+++.|++++.. -.+.+++|.|+.|||| .....++|++++|+..+.++.+++.+...
T Consensus 60 ~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 133 (414)
T 3eiq_A 60 FEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGD 133 (414)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGG
T ss_pred CCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhc
Confidence 34689999999832 2355789999999999 12567899999999999999999987653
No 33
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=92.13 E-value=0.26 Score=56.14 Aligned_cols=58 Identities=12% Similarity=0.116 Sum_probs=46.6
Q ss_pred hhcCCHHHHHHhccCC-C--CCEEEEecCCCCC--------------CCCCCCEEEEeccHHHHHHHHHHHHhhh
Q 001127 245 LQSLNDQQLEAACGDM-S--TPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASEMRDRIGSIV 302 (1148)
Q Consensus 245 ~~~Ln~~Qr~aV~~~~-~--~~~lI~G~AGSGK--------------~~~~~~ILvltft~~Aa~ei~~RL~~~l 302 (1148)
...+++.|++++..-. + .+++|.|+.|||| .....++|++++|+..+.++.+++.+..
T Consensus 25 ~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 99 (395)
T 3pey_A 25 FQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMG 99 (395)
T ss_dssp CCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHh
Confidence 3468999999984222 2 6799999999999 1245689999999999999999998754
No 34
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=92.07 E-value=0.35 Score=51.79 Aligned_cols=58 Identities=19% Similarity=0.065 Sum_probs=45.6
Q ss_pred hcCCHHHHHHhcc-CCCCCEEEEecCCCCC-------------CC----------CCCCEEEEeccHHHHHHHHHHHHhh
Q 001127 246 QSLNDQQLEAACG-DMSTPLLIVAGPGSGK-------------GI----------SPSNILAMTFTTAAASEMRDRIGSI 301 (1148)
Q Consensus 246 ~~Ln~~Qr~aV~~-~~~~~~lI~G~AGSGK-------------~~----------~~~~ILvltft~~Aa~ei~~RL~~~ 301 (1148)
..+++.|++++.. -.+.+++|.|+.|||| .. ...++|++++|+..+.++.+++.+.
T Consensus 44 ~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 123 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKF 123 (253)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHH
Confidence 4689999999842 2346799999999999 11 1248999999999999999998876
Q ss_pred hc
Q 001127 302 VG 303 (1148)
Q Consensus 302 l~ 303 (1148)
..
T Consensus 124 ~~ 125 (253)
T 1wrb_A 124 SL 125 (253)
T ss_dssp HT
T ss_pred hc
Confidence 43
No 35
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=91.69 E-value=0.11 Score=54.35 Aligned_cols=58 Identities=14% Similarity=0.066 Sum_probs=45.9
Q ss_pred hcCCHHHHHHhcc-CCCCCEEEEecCCCCC--------------CCCCCCEEEEeccHHHHHHHHHHHHhhhc
Q 001127 246 QSLNDQQLEAACG-DMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASEMRDRIGSIVG 303 (1148)
Q Consensus 246 ~~Ln~~Qr~aV~~-~~~~~~lI~G~AGSGK--------------~~~~~~ILvltft~~Aa~ei~~RL~~~l~ 303 (1148)
..+++.|++++.. ..+.+++|.++.|||| .....++|++++|+..+.++.+++.+...
T Consensus 25 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 97 (219)
T 1q0u_A 25 YKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITK 97 (219)
T ss_dssp CSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhh
Confidence 4589999999832 2246799999999999 12346899999999999999998876543
No 36
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=91.53 E-value=0.15 Score=59.02 Aligned_cols=56 Identities=18% Similarity=0.105 Sum_probs=46.6
Q ss_pred cCCHHHHHHhccC-CCCCEEEEecCCCCC-----------CCCCCCEEEEeccHHHHHHHHHHHHhhh
Q 001127 247 SLNDQQLEAACGD-MSTPLLIVAGPGSGK-----------GISPSNILAMTFTTAAASEMRDRIGSIV 302 (1148)
Q Consensus 247 ~Ln~~Qr~aV~~~-~~~~~lI~G~AGSGK-----------~~~~~~ILvltft~~Aa~ei~~RL~~~l 302 (1148)
.+++.|++++..- .+.+++|.|+.|||| ...+.++|++++|+..+.++.+++.+..
T Consensus 21 ~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 88 (414)
T 3oiy_A 21 DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLA 88 (414)
T ss_dssp CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHc
Confidence 5899999998432 345789999999999 2356799999999999999999998753
No 37
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=91.41 E-value=0.34 Score=55.56 Aligned_cols=58 Identities=21% Similarity=0.142 Sum_probs=46.7
Q ss_pred hcCCHHHHHHhccC-CCCCEEEEecCCCCC--------------CCCCCCEEEEeccHHHHHHHHHHHHhhhc
Q 001127 246 QSLNDQQLEAACGD-MSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASEMRDRIGSIVG 303 (1148)
Q Consensus 246 ~~Ln~~Qr~aV~~~-~~~~~lI~G~AGSGK--------------~~~~~~ILvltft~~Aa~ei~~RL~~~l~ 303 (1148)
..|++.|++++..- .+.+++|.|+.|||| ...+.++|++++|+..+.++.+++.+...
T Consensus 42 ~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 114 (400)
T 1s2m_A 42 EKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGK 114 (400)
T ss_dssp CSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhc
Confidence 36899999998421 246789999999999 12456899999999999999999987654
No 38
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=90.80 E-value=0.36 Score=53.44 Aligned_cols=58 Identities=17% Similarity=0.100 Sum_probs=45.5
Q ss_pred hhcCCHHHHHHhccCC---CCCEEEEecCCCCC--------------CCCCCCEEEEeccHHHHHHHHHHHHhhh
Q 001127 245 LQSLNDQQLEAACGDM---STPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASEMRDRIGSIV 302 (1148)
Q Consensus 245 ~~~Ln~~Qr~aV~~~~---~~~~lI~G~AGSGK--------------~~~~~~ILvltft~~Aa~ei~~RL~~~l 302 (1148)
...+++-|+.++..-. +.++++.|+.|||| .....++||+++|+..+.++.+.+....
T Consensus 112 ~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~ 186 (300)
T 3fmo_B 112 FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMG 186 (300)
T ss_dssp CCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHH
Confidence 3568999999984322 26899999999999 1223379999999999999998887654
No 39
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=90.69 E-value=0.44 Score=54.31 Aligned_cols=58 Identities=19% Similarity=0.170 Sum_probs=46.5
Q ss_pred hcCCHHHHHHhcc-CCCCCEEEEecCCCCC--------------CCCCCCEEEEeccHHHHHHHHHHHHhhhc
Q 001127 246 QSLNDQQLEAACG-DMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASEMRDRIGSIVG 303 (1148)
Q Consensus 246 ~~Ln~~Qr~aV~~-~~~~~~lI~G~AGSGK--------------~~~~~~ILvltft~~Aa~ei~~RL~~~l~ 303 (1148)
..|++.|++++.. ..+.+++|.++.|||| .....++|++++|+..+.++.+++.+...
T Consensus 29 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 101 (391)
T 1xti_A 29 EHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSK 101 (391)
T ss_dssp CSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHh
Confidence 3589999999843 2356799999999999 12345899999999999999998877643
No 40
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=90.63 E-value=0.11 Score=60.37 Aligned_cols=57 Identities=26% Similarity=0.328 Sum_probs=44.3
Q ss_pred CEEEEecCCCCC------CCCCCCEEEEeccHHHHHHHHHHHHhhhccccCCCceEechHHHHH
Q 001127 263 PLLIVAGPGSGK------GISPSNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSL 320 (1148)
Q Consensus 263 ~~lI~G~AGSGK------~~~~~~ILvltft~~Aa~ei~~RL~~~l~~~~~~~v~V~Tfhs~a~ 320 (1148)
-.+|.|+||||| .....+++++|+|+.+++++++++.+. +........|.||++|..
T Consensus 163 v~~I~G~aGsGKTt~I~~~~~~~~~lVlTpT~~aa~~l~~kl~~~-~~~~~~~~~V~T~dsfL~ 225 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRVNFEEDLILVPGRQAAEMIRRRANAS-GIIVATKDNVRTVDSFLM 225 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHCCTTTCEEEESCHHHHHHHHHHHTTT-SCCCCCTTTEEEHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhccCCeEEEeCCHHHHHHHHHHhhhc-CccccccceEEEeHHhhc
Confidence 357889999999 234578999999999999999999653 222234568999999864
No 41
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=90.57 E-value=1.1 Score=54.90 Aligned_cols=78 Identities=19% Similarity=0.189 Sum_probs=59.6
Q ss_pred CcCEEEEecCccCCHHHHHHHHHHHcC-CcEEEEcCCCCcccccCCCChHHHHHHHHhcCCceEEEeccCCCC--hhHHH
Q 001127 475 SWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISGFDSFRKDFLNYKEIRLTRNYRS--TRCIV 551 (1148)
Q Consensus 475 ~fd~IiIDEfQDftp~q~~lL~~L~~~-~~l~lvGD~~QsIy~frga~~~lf~~l~~~~~~~~~~~L~~nyRs--~~~I~ 551 (1148)
..|.++|||+--.... +|..|... .+++++..-+ ++-|..-.+..+|....+....+.|+.-.|- +.+|-
T Consensus 255 ~~dlliVDEAAaIp~p---ll~~ll~~~~~v~~~tTv~----GYEGtGrgf~lk~~~~L~~~~~~~L~~piR~a~~DplE 327 (671)
T 2zpa_A 255 QADWLVVDEAAAIPAP---LLHQLVSRFPRTLLTTTVQ----GYEGTGRGFLLKFCARFPHLHRFELQQPIRWAQGCPLE 327 (671)
T ss_dssp CCSEEEEETGGGSCHH---HHHHHHTTSSEEEEEEEBS----STTBBCHHHHHHHHHTSTTCEEEECCSCSSSCTTCHHH
T ss_pred cCCEEEEEchhcCCHH---HHHHHHhhCCeEEEEecCC----cCCCcCcccccccHhhcCCCcEEEccCceecCCCCCHH
Confidence 4779999999888866 66667664 4788886544 5667666665788888888889999999887 56888
Q ss_pred HHHHhhhh
Q 001127 552 EAASSLIQ 559 (1148)
Q Consensus 552 ~~an~ll~ 559 (1148)
.+.+.++-
T Consensus 328 ~wl~~~ll 335 (671)
T 2zpa_A 328 KMVSEALV 335 (671)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhhC
Confidence 88876653
No 42
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=90.56 E-value=0.74 Score=55.60 Aligned_cols=97 Identities=14% Similarity=0.104 Sum_probs=64.1
Q ss_pred hcCCHHHHHHhccC---CCCCEEEEecCCCCC--------------C----CCCCCEEEEeccHHHHHHHHHHHHhhhcc
Q 001127 246 QSLNDQQLEAACGD---MSTPLLIVAGPGSGK--------------G----ISPSNILAMTFTTAAASEMRDRIGSIVGK 304 (1148)
Q Consensus 246 ~~Ln~~Qr~aV~~~---~~~~~lI~G~AGSGK--------------~----~~~~~ILvltft~~Aa~ei~~RL~~~l~~ 304 (1148)
..|++.|++++..- .+.+++|.|+.|||| . ....++||+++|+..+.++.+++.+..+.
T Consensus 93 ~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~ 172 (563)
T 3i5x_A 93 PGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDM 172 (563)
T ss_dssp SSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhh
Confidence 46899999998422 245789999999999 1 11348999999999999999998874211
Q ss_pred --------------------------ccCCCceEechHHHHHHHHHHHHHHhcCCCCceecChHH
Q 001127 305 --------------------------ATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQ 343 (1148)
Q Consensus 305 --------------------------~~~~~v~V~Tfhs~a~rIl~~~~~~~~~~~~~~i~~~~~ 343 (1148)
.....+-|.|..++...+.+. ....-..-.+.++|+..
T Consensus 173 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~~~~~~~~lViDEah 236 (563)
T 3i5x_A 173 NYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY-SNKFFRFVDYKVLDEAD 236 (563)
T ss_dssp CGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH-HHHHCTTCCEEEEETHH
T ss_pred ccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhc-cccccccceEEEEeCHH
Confidence 012357788888886544332 22111223356777665
No 43
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=90.26 E-value=0.81 Score=55.60 Aligned_cols=97 Identities=14% Similarity=0.104 Sum_probs=64.7
Q ss_pred hcCCHHHHHHhccC---CCCCEEEEecCCCCC--------------C----CCCCCEEEEeccHHHHHHHHHHHHhhhcc
Q 001127 246 QSLNDQQLEAACGD---MSTPLLIVAGPGSGK--------------G----ISPSNILAMTFTTAAASEMRDRIGSIVGK 304 (1148)
Q Consensus 246 ~~Ln~~Qr~aV~~~---~~~~~lI~G~AGSGK--------------~----~~~~~ILvltft~~Aa~ei~~RL~~~l~~ 304 (1148)
..|++.|++++..- .+..++|.|+.|||| . ....++||+++|+..+.++.+++.+....
T Consensus 42 ~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~ 121 (579)
T 3sqw_A 42 PGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDM 121 (579)
T ss_dssp SSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhh
Confidence 46899999998422 245788899999999 1 12348999999999999999998875310
Q ss_pred --------------------------ccCCCceEechHHHHHHHHHHHHHHhcCCCCceecChHH
Q 001127 305 --------------------------ATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQ 343 (1148)
Q Consensus 305 --------------------------~~~~~v~V~Tfhs~a~rIl~~~~~~~~~~~~~~i~~~~~ 343 (1148)
.....+-|.|..++...+.+. ....-..-.+.++|+..
T Consensus 122 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~-~~~~~~~~~~lViDEah 185 (579)
T 3sqw_A 122 NYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY-SNKFFRFVDYKVLDEAD 185 (579)
T ss_dssp CGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH-HHHHCTTCCEEEEETHH
T ss_pred cccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhc-cccccccCCEEEEEChH
Confidence 012457788998886544332 22122223355777665
No 44
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=89.98 E-value=0.19 Score=55.97 Aligned_cols=57 Identities=19% Similarity=0.120 Sum_probs=46.5
Q ss_pred hcCCHHHHHHhcc-CCCCCEEEEecCCCCC--------CCCCCCEEEEeccHHHHHHHHHHHHhhh
Q 001127 246 QSLNDQQLEAACG-DMSTPLLIVAGPGSGK--------GISPSNILAMTFTTAAASEMRDRIGSIV 302 (1148)
Q Consensus 246 ~~Ln~~Qr~aV~~-~~~~~~lI~G~AGSGK--------~~~~~~ILvltft~~Aa~ei~~RL~~~l 302 (1148)
..|++.|++++.. ..+.+++|.|+.|||| ...+.++|++++++..+.++.+++.+..
T Consensus 15 ~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~ 80 (337)
T 2z0m_A 15 KNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVASHIRDIG 80 (337)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 4689999999842 2356899999999999 2236789999999999999999998754
No 45
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=89.76 E-value=0.18 Score=54.68 Aligned_cols=58 Identities=19% Similarity=0.186 Sum_probs=46.4
Q ss_pred hcCCHHHHHHhcc-CCCCCEEEEecCCCCC-------------C-----CCCCCEEEEeccHHHHHHHHHHHHhhhc
Q 001127 246 QSLNDQQLEAACG-DMSTPLLIVAGPGSGK-------------G-----ISPSNILAMTFTTAAASEMRDRIGSIVG 303 (1148)
Q Consensus 246 ~~Ln~~Qr~aV~~-~~~~~~lI~G~AGSGK-------------~-----~~~~~ILvltft~~Aa~ei~~RL~~~l~ 303 (1148)
..+++.|++++.. -.+.+++|.|+.|||| . ..+.++|++++|+..+.++.+++.+...
T Consensus 75 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 151 (262)
T 3ly5_A 75 TNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMT 151 (262)
T ss_dssp CBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 4589999999832 2246789999999999 0 1467899999999999999999987654
No 46
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=89.70 E-value=0.3 Score=55.74 Aligned_cols=59 Identities=17% Similarity=0.165 Sum_probs=47.4
Q ss_pred hhcCCHHHHHHhcc-CCCCCEEEEecCCCCC--------------CCCCCCEEEEeccHHHHHHHHHHHHhhhc
Q 001127 245 LQSLNDQQLEAACG-DMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASEMRDRIGSIVG 303 (1148)
Q Consensus 245 ~~~Ln~~Qr~aV~~-~~~~~~lI~G~AGSGK--------------~~~~~~ILvltft~~Aa~ei~~RL~~~l~ 303 (1148)
...|++.|++++.. ..+.+++|.|+.|||| ...+.++|++++++..+.++.+++.+...
T Consensus 41 ~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 114 (394)
T 1fuu_A 41 FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAF 114 (394)
T ss_dssp CCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhc
Confidence 34789999999832 2256789999999999 12456999999999999999999887654
No 47
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=89.69 E-value=0.41 Score=54.96 Aligned_cols=58 Identities=17% Similarity=0.100 Sum_probs=46.0
Q ss_pred hhcCCHHHHHHhccCC---CCCEEEEecCCCCC--------------CCCCCCEEEEeccHHHHHHHHHHHHhhh
Q 001127 245 LQSLNDQQLEAACGDM---STPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASEMRDRIGSIV 302 (1148)
Q Consensus 245 ~~~Ln~~Qr~aV~~~~---~~~~lI~G~AGSGK--------------~~~~~~ILvltft~~Aa~ei~~RL~~~l 302 (1148)
...+++.|++++..-. +.+++|.|+.|||| .....++|++++|+..+.++.+++.+..
T Consensus 45 ~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 119 (412)
T 3fht_A 45 FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMG 119 (412)
T ss_dssp CCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHH
Confidence 3468999999984222 36799999999999 1234589999999999999988887754
No 48
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=89.56 E-value=0.31 Score=58.19 Aligned_cols=55 Identities=18% Similarity=0.154 Sum_probs=44.7
Q ss_pred cCCHHHHHHhccCC-CCCEEEEecCCCCC------------CCCCCCEEEEeccHHHHHHHHHHHHhh
Q 001127 247 SLNDQQLEAACGDM-STPLLIVAGPGSGK------------GISPSNILAMTFTTAAASEMRDRIGSI 301 (1148)
Q Consensus 247 ~Ln~~Qr~aV~~~~-~~~~lI~G~AGSGK------------~~~~~~ILvltft~~Aa~ei~~RL~~~ 301 (1148)
.|++.|++|+..-. +...+|.|+.|||| .....++|++++|+..+.+..+++.+.
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHh
Confidence 78999999984322 35689999999999 123349999999999999999999765
No 49
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=89.40 E-value=0.77 Score=53.60 Aligned_cols=58 Identities=16% Similarity=0.105 Sum_probs=46.7
Q ss_pred hcCCHHHHHHhcc-CCCCCEEEEecCCCCC--------------C-----CCCCCEEEEeccHHHHHHHHHHHHhhhc
Q 001127 246 QSLNDQQLEAACG-DMSTPLLIVAGPGSGK--------------G-----ISPSNILAMTFTTAAASEMRDRIGSIVG 303 (1148)
Q Consensus 246 ~~Ln~~Qr~aV~~-~~~~~~lI~G~AGSGK--------------~-----~~~~~ILvltft~~Aa~ei~~RL~~~l~ 303 (1148)
..+++.|++++.. ..+.++++.|+.|||| . ....++|++++|+..+.++.+.+.+...
T Consensus 77 ~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 154 (434)
T 2db3_A 77 KIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAF 154 (434)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhc
Confidence 4689999999832 2356799999999999 1 1245899999999999999999987654
No 50
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=89.20 E-value=0.39 Score=55.25 Aligned_cols=57 Identities=14% Similarity=0.147 Sum_probs=46.3
Q ss_pred hcCCHHHHHHhcc-CCCCCEEEEecCCCCC--------------CCCCCCEEEEeccHHHHHHHHHHHHhhh
Q 001127 246 QSLNDQQLEAACG-DMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASEMRDRIGSIV 302 (1148)
Q Consensus 246 ~~Ln~~Qr~aV~~-~~~~~~lI~G~AGSGK--------------~~~~~~ILvltft~~Aa~ei~~RL~~~l 302 (1148)
..+++.|++++.. -.+.+++|.|+.|||| .....++|++++|+..+.++.+++.+..
T Consensus 58 ~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 129 (410)
T 2j0s_A 58 EKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALG 129 (410)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHh
Confidence 4589999999842 2356799999999999 1246799999999999999999887653
No 51
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=89.11 E-value=0.71 Score=53.08 Aligned_cols=59 Identities=20% Similarity=0.101 Sum_probs=46.4
Q ss_pred hhcCCHHHHHHhcc-CCCCCEEEEecCCCCC---------------CC-----------------CCCCEEEEeccHHHH
Q 001127 245 LQSLNDQQLEAACG-DMSTPLLIVAGPGSGK---------------GI-----------------SPSNILAMTFTTAAA 291 (1148)
Q Consensus 245 ~~~Ln~~Qr~aV~~-~~~~~~lI~G~AGSGK---------------~~-----------------~~~~ILvltft~~Aa 291 (1148)
...+++.|++++.. ..+.+++|.|+.|||| .. ...++|++++|+..+
T Consensus 35 ~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~ 114 (417)
T 2i4i_A 35 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELA 114 (417)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHH
T ss_pred CCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHH
Confidence 35789999999832 2356899999999999 10 014799999999999
Q ss_pred HHHHHHHHhhhc
Q 001127 292 SEMRDRIGSIVG 303 (1148)
Q Consensus 292 ~ei~~RL~~~l~ 303 (1148)
.++.+++.+...
T Consensus 115 ~q~~~~~~~~~~ 126 (417)
T 2i4i_A 115 VQIYEEARKFSY 126 (417)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 999999987653
No 52
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=88.50 E-value=0.54 Score=55.56 Aligned_cols=58 Identities=17% Similarity=0.100 Sum_probs=45.1
Q ss_pred hhcCCHHHHHHhccCC---CCCEEEEecCCCCC--------------CCCCCCEEEEeccHHHHHHHHHHHHhhh
Q 001127 245 LQSLNDQQLEAACGDM---STPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASEMRDRIGSIV 302 (1148)
Q Consensus 245 ~~~Ln~~Qr~aV~~~~---~~~~lI~G~AGSGK--------------~~~~~~ILvltft~~Aa~ei~~RL~~~l 302 (1148)
...+++.|++++..-. ..+++|.|+.|||| .....++||+++|+..+.++.+++.+..
T Consensus 112 ~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 186 (479)
T 3fmp_B 112 FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMG 186 (479)
T ss_dssp CCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHH
Confidence 4568999999984322 26789999999999 1122389999999999999988887654
No 53
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=88.50 E-value=0.57 Score=61.34 Aligned_cols=80 Identities=16% Similarity=0.098 Sum_probs=61.8
Q ss_pred hhcCCHHHHHHhc-cCCCCCEEEEecCCCCC-----------CCCCCCEEEEeccHHHHHHHHHHHHhhhccc-------
Q 001127 245 LQSLNDQQLEAAC-GDMSTPLLIVAGPGSGK-----------GISPSNILAMTFTTAAASEMRDRIGSIVGKA------- 305 (1148)
Q Consensus 245 ~~~Ln~~Qr~aV~-~~~~~~~lI~G~AGSGK-----------~~~~~~ILvltft~~Aa~ei~~RL~~~l~~~------- 305 (1148)
.-.|++.|++|+. ...+.+++|.|+.|||| ...+.+++|+++|+..+.++.+++.+..+..
T Consensus 182 ~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~ 261 (1108)
T 3l9o_A 182 PFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDI 261 (1108)
T ss_dssp SSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCcc
Confidence 3358999999994 33456799999999999 2346799999999999999999998865421
Q ss_pred ---cCCCceEechHHHHHHHHH
Q 001127 306 ---TAKELTISTFHSFSLQLCR 324 (1148)
Q Consensus 306 ---~~~~v~V~Tfhs~a~rIl~ 324 (1148)
....+-|+|...|...+.+
T Consensus 262 ~~~~~~~IlV~Tpe~L~~~L~~ 283 (1108)
T 3l9o_A 262 TINPDAGCLVMTTEILRSMLYR 283 (1108)
T ss_dssp BCCCSCSEEEEEHHHHHHHHHH
T ss_pred ccCCCCCEEEeChHHHHHHHHc
Confidence 1245788999888765544
No 54
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=88.49 E-value=0.44 Score=55.60 Aligned_cols=57 Identities=18% Similarity=0.069 Sum_probs=47.9
Q ss_pred cCCHHHHHHhccCCCCCEEEEecCCCCC------------CCCCCCEEEEeccHHHHHHHHHHHHhhhc
Q 001127 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK------------GISPSNILAMTFTTAAASEMRDRIGSIVG 303 (1148)
Q Consensus 247 ~Ln~~Qr~aV~~~~~~~~lI~G~AGSGK------------~~~~~~ILvltft~~Aa~ei~~RL~~~l~ 303 (1148)
.|.+.|++++.....++++|.++.|+|| ...+.++|++++++..+.+..+++.+..+
T Consensus 9 ~l~~~Q~~~i~~~~~~~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~ 77 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFN 77 (494)
T ss_dssp CCCHHHHHHHHHGGGSCEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBC
T ss_pred CccHHHHHHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhC
Confidence 6889999999544455899999999999 12578999999999999999999988764
No 55
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=88.40 E-value=0.42 Score=50.70 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=42.9
Q ss_pred cCCHHHHHHhcc-CCCCCEEEEecCCCCC--------------CC--CCCCEEEEeccHHHHHHHHHHHHhhhc
Q 001127 247 SLNDQQLEAACG-DMSTPLLIVAGPGSGK--------------GI--SPSNILAMTFTTAAASEMRDRIGSIVG 303 (1148)
Q Consensus 247 ~Ln~~Qr~aV~~-~~~~~~lI~G~AGSGK--------------~~--~~~~ILvltft~~Aa~ei~~RL~~~l~ 303 (1148)
.+.+.|.+++.. ..+..++|.|+.|||| .. ...+++++.+++..+.++.+++....+
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~ 134 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERG 134 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTT
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhc
Confidence 357788888732 2355688899999999 11 123899999999999999999986554
No 56
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=87.39 E-value=0.56 Score=55.27 Aligned_cols=54 Identities=31% Similarity=0.266 Sum_probs=44.4
Q ss_pred cCCHHHHHHhcc-CCCCCEEEEecCCCCC--------CCCCCCEEEEeccHHHHHHHHHHHHh
Q 001127 247 SLNDQQLEAACG-DMSTPLLIVAGPGSGK--------GISPSNILAMTFTTAAASEMRDRIGS 300 (1148)
Q Consensus 247 ~Ln~~Qr~aV~~-~~~~~~lI~G~AGSGK--------~~~~~~ILvltft~~Aa~ei~~RL~~ 300 (1148)
.|++.|++++.. ..++..+|.|+.|||| ...+.++||+++++..+.+..+++.+
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~~~~~~ 155 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGI 155 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHHHHHHGGG
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHh
Confidence 579999999843 2345688999999999 12357999999999999999999987
No 57
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=87.33 E-value=0.54 Score=56.19 Aligned_cols=57 Identities=12% Similarity=0.141 Sum_probs=45.3
Q ss_pred cCCHHHHHHhccCC---CCCEEEEecCCCCC--------------CCCCCCEEEEeccHHHHHHHHHHHHhhhc
Q 001127 247 SLNDQQLEAACGDM---STPLLIVAGPGSGK--------------GISPSNILAMTFTTAAASEMRDRIGSIVG 303 (1148)
Q Consensus 247 ~Ln~~Qr~aV~~~~---~~~~lI~G~AGSGK--------------~~~~~~ILvltft~~Aa~ei~~RL~~~l~ 303 (1148)
.+++.|++|+..-. ..+++|.|+.|||| .....++|++++++..+.++.+++.+..+
T Consensus 141 ~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~ 214 (508)
T 3fho_A 141 XXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGK 214 (508)
T ss_dssp ECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHST
T ss_pred CcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCC
Confidence 57888988873221 36799999999999 22345899999999999999999988654
No 58
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=86.69 E-value=0.88 Score=62.16 Aligned_cols=59 Identities=19% Similarity=0.075 Sum_probs=48.4
Q ss_pred hhcCCHHHHHHhc--cCCCCCEEEEecCCCCC-------------CCCCCCEEEEeccHHHHHHHHHHHHhhhc
Q 001127 245 LQSLNDQQLEAAC--GDMSTPLLIVAGPGSGK-------------GISPSNILAMTFTTAAASEMRDRIGSIVG 303 (1148)
Q Consensus 245 ~~~Ln~~Qr~aV~--~~~~~~~lI~G~AGSGK-------------~~~~~~ILvltft~~Aa~ei~~RL~~~l~ 303 (1148)
...+|+-|.+++. ...+.+++|.||.|||| ..++.+++++++++..+.+..+.+.+.++
T Consensus 924 f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~ 997 (1724)
T 4f92_B 924 FPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQ 997 (1724)
T ss_dssp CSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhc
Confidence 4579999999983 35567899999999999 23567899999999999998888776544
No 59
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=86.66 E-value=0.45 Score=59.42 Aligned_cols=54 Identities=26% Similarity=0.166 Sum_probs=45.5
Q ss_pred hcCCHHHHHHhcc--CCCCCEEEEecCCCCC------------CCCCCCEEEEeccHHHHHHHHHHHH
Q 001127 246 QSLNDQQLEAACG--DMSTPLLIVAGPGSGK------------GISPSNILAMTFTTAAASEMRDRIG 299 (1148)
Q Consensus 246 ~~Ln~~Qr~aV~~--~~~~~~lI~G~AGSGK------------~~~~~~ILvltft~~Aa~ei~~RL~ 299 (1148)
..|++.|.+++.. ..+.+++|.|+.|||| ...+.+++++++++..+.++.+++.
T Consensus 29 ~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~ 96 (715)
T 2va8_A 29 KKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFK 96 (715)
T ss_dssp CBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHH
Confidence 4789999999943 3467899999999999 1246799999999999999999994
No 60
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=85.09 E-value=0.82 Score=54.67 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=46.1
Q ss_pred cCCHHHHHHhccC-CCCCEEEEecCCCCC-------------CCC---CCCEEEEeccHHHHHHHHHHHHhhhc
Q 001127 247 SLNDQQLEAACGD-MSTPLLIVAGPGSGK-------------GIS---PSNILAMTFTTAAASEMRDRIGSIVG 303 (1148)
Q Consensus 247 ~Ln~~Qr~aV~~~-~~~~~lI~G~AGSGK-------------~~~---~~~ILvltft~~Aa~ei~~RL~~~l~ 303 (1148)
.|++.|.+++... .+.+++|.++.|||| ... +.++||+++|+..+.+..+.+.+...
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 77 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFE 77 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhc
Confidence 4789999998432 356799999999999 222 67899999999999999999887654
No 61
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=85.07 E-value=0.83 Score=54.73 Aligned_cols=57 Identities=18% Similarity=0.207 Sum_probs=45.9
Q ss_pred cCCHHHHHHhccC-CCCCEEEEecCCCCC-------------CCC---CCCEEEEeccHHHHHHHHHHHHhhhc
Q 001127 247 SLNDQQLEAACGD-MSTPLLIVAGPGSGK-------------GIS---PSNILAMTFTTAAASEMRDRIGSIVG 303 (1148)
Q Consensus 247 ~Ln~~Qr~aV~~~-~~~~~lI~G~AGSGK-------------~~~---~~~ILvltft~~Aa~ei~~RL~~~l~ 303 (1148)
.|++.|.+++..- .+.+++|.++.|||| ... +.++|++++|+..+.++.+.+.+...
T Consensus 7 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 7 KARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp -CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 5789999998432 356799999999999 222 67899999999999999999987654
No 62
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=84.45 E-value=0.85 Score=46.93 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=28.7
Q ss_pred CcCEEEEecCccCCHHHHHHHHHHHcC-CcEEEEc
Q 001127 475 SWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVG 508 (1148)
Q Consensus 475 ~fd~IiIDEfQDftp~q~~lL~~L~~~-~~l~lvG 508 (1148)
.||+|+|||+|.+++.+...|..|... ..+++.|
T Consensus 81 ~~dvViIDEaqfl~~~~v~~l~~l~~~~~~Vi~~G 115 (191)
T 1xx6_A 81 DTEVIAIDEVQFFDDEIVEIVNKIAESGRRVICAG 115 (191)
T ss_dssp TCSEEEECSGGGSCTHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEe
Confidence 589999999999999999999988764 4677776
No 63
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=84.37 E-value=1.1 Score=58.23 Aligned_cols=77 Identities=16% Similarity=0.114 Sum_probs=58.5
Q ss_pred cCCHHHHHHhcc-CCCCCEEEEecCCCCC-----------CCCCCCEEEEeccHHHHHHHHHHHHhhhccc---------
Q 001127 247 SLNDQQLEAACG-DMSTPLLIVAGPGSGK-----------GISPSNILAMTFTTAAASEMRDRIGSIVGKA--------- 305 (1148)
Q Consensus 247 ~Ln~~Qr~aV~~-~~~~~~lI~G~AGSGK-----------~~~~~~ILvltft~~Aa~ei~~RL~~~l~~~--------- 305 (1148)
.|++.|++++.. ..+.+++|.|+.|||| ...+.++|++++++..+.+..+++.+..+..
T Consensus 86 ~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~~ 165 (1010)
T 2xgj_A 86 TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITI 165 (1010)
T ss_dssp CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCEE
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCcc
Confidence 489999999832 2356789999999999 1246799999999999999999998765421
Q ss_pred -cCCCceEechHHHHHHHH
Q 001127 306 -TAKELTISTFHSFSLQLC 323 (1148)
Q Consensus 306 -~~~~v~V~Tfhs~a~rIl 323 (1148)
....+-|+|...|...+.
T Consensus 166 ~~~~~IvV~Tpe~L~~~L~ 184 (1010)
T 2xgj_A 166 NPDAGCLVMTTEILRSMLY 184 (1010)
T ss_dssp CTTCSEEEEEHHHHHHHHH
T ss_pred CCCCCEEEEcHHHHHHHHH
Confidence 123577889887765444
No 64
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=84.10 E-value=1.1 Score=57.96 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=57.8
Q ss_pred cCCHHHHHHhcc-CCCCCEEEEecCCCCC-----------CCCCCCEEEEeccHHHHHHHHHHHHhhhcc----------
Q 001127 247 SLNDQQLEAACG-DMSTPLLIVAGPGSGK-----------GISPSNILAMTFTTAAASEMRDRIGSIVGK---------- 304 (1148)
Q Consensus 247 ~Ln~~Qr~aV~~-~~~~~~lI~G~AGSGK-----------~~~~~~ILvltft~~Aa~ei~~RL~~~l~~---------- 304 (1148)
.|++.|++++.. ..+.+++|.|+.|||| ...+.+++|+++++..+.++.+++.+.++.
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~ 118 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDV 118 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSC
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 489999999842 2356799999999999 234578999999999999999999886521
Q ss_pred --ccCCCceEechHHHHHHHH
Q 001127 305 --ATAKELTISTFHSFSLQLC 323 (1148)
Q Consensus 305 --~~~~~v~V~Tfhs~a~rIl 323 (1148)
.....+-|.|...+...+.
T Consensus 119 ~~~~~~~IlV~Tpe~L~~~l~ 139 (997)
T 4a4z_A 119 QINPDANCLIMTTEILRSMLY 139 (997)
T ss_dssp EECTTSSEEEEEHHHHHHHHH
T ss_pred ccCCCCCEEEECHHHHHHHHH
Confidence 1124567888888755443
No 65
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=83.98 E-value=0.83 Score=59.79 Aligned_cols=93 Identities=13% Similarity=0.071 Sum_probs=65.3
Q ss_pred cCCHHHHHHhccC-CCCCEEEEecCCCCC-----------CCCCCCEEEEeccHHHHHHHHHHHHhhhc----------c
Q 001127 247 SLNDQQLEAACGD-MSTPLLIVAGPGSGK-----------GISPSNILAMTFTTAAASEMRDRIGSIVG----------K 304 (1148)
Q Consensus 247 ~Ln~~Qr~aV~~~-~~~~~lI~G~AGSGK-----------~~~~~~ILvltft~~Aa~ei~~RL~~~l~----------~ 304 (1148)
.+++.|++++..- .+.+++|.|+.|||| ...+.++||+++|+..+.++.+++.+... .
T Consensus 78 ~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg 157 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSS 157 (1104)
T ss_dssp CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTT
T ss_pred CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 6899999998432 356899999999999 23567899999999999999999998321 0
Q ss_pred c--------------cCCCceEechHHHHHHHHHHHHHHhcCCCCceecChHH
Q 001127 305 A--------------TAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQ 343 (1148)
Q Consensus 305 ~--------------~~~~v~V~Tfhs~a~rIl~~~~~~~~~~~~~~i~~~~~ 343 (1148)
. +...+-|.|.+++...+-. .....-.+.++|+..
T Consensus 158 ~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~----l~~~~l~~lViDEaH 206 (1104)
T 4ddu_A 158 MKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK----LSQKRFDFVFVDDVD 206 (1104)
T ss_dssp CCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH----HHTSCCSEEEESCHH
T ss_pred CCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh----hcccCcCEEEEeCCC
Confidence 0 1145678998888543322 111233467778763
No 66
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=81.99 E-value=0.82 Score=47.79 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=28.6
Q ss_pred CcCEEEEecCccCCHHHHHHHHHHHc-CCcEEEEc
Q 001127 475 SWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVG 508 (1148)
Q Consensus 475 ~fd~IiIDEfQDftp~q~~lL~~L~~-~~~l~lvG 508 (1148)
.|++|+|||+|.|++.+..+|..|.. +..+++.|
T Consensus 101 ~~dvViIDEaQF~~~~~V~~l~~l~~~~~~Vi~~G 135 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGDIVEVVQVLANRGYRVIVAG 135 (214)
T ss_dssp SCCEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEECcccCCHHHHHHHHHHhhCCCEEEEEe
Confidence 58999999999999999999998876 44677765
No 67
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=80.42 E-value=0.46 Score=59.69 Aligned_cols=57 Identities=21% Similarity=0.049 Sum_probs=46.0
Q ss_pred cCCHHHHHHhccC-------CCCCEEEEecCCCCC-----------CCCCCCEEEEeccHHHHHHHHHHHHhhhc
Q 001127 247 SLNDQQLEAACGD-------MSTPLLIVAGPGSGK-----------GISPSNILAMTFTTAAASEMRDRIGSIVG 303 (1148)
Q Consensus 247 ~Ln~~Qr~aV~~~-------~~~~~lI~G~AGSGK-----------~~~~~~ILvltft~~Aa~ei~~RL~~~l~ 303 (1148)
.|++.|++++..- ...+++|.|+.|||| ...+.+++++++|+..+.++.+++.+.++
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~ 442 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFS 442 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhh
Confidence 6899999988321 123789999999999 12357999999999999999999988764
No 68
>3h4r_A Exodeoxyribonuclease 8; exonuclease, recombination, hydrolase; 2.80A {Escherichia coli}
Probab=80.21 E-value=0.99 Score=48.94 Aligned_cols=40 Identities=10% Similarity=0.125 Sum_probs=33.9
Q ss_pred ccChhhhhHHhhChhhhHHHhhcC-----cccchhhhHHHHHHHH
Q 001127 989 GAATESMELLEACNGNSFLRRFSV-----EDRSIISHLFHQWAKK 1028 (1148)
Q Consensus 989 ~~SvSrlE~~~~CPf~~Fl~~~Gl-----~~a~~iGtl~H~~le~ 1028 (1148)
.+|.|+|-.|..||..|+.+..+. ..+.++|+++|.++-.
T Consensus 12 aiS~S~l~~~~~~Pa~~~~~~~~~~~~~~s~A~~~Gt~~H~~vLe 56 (265)
T 3h4r_A 12 GISKSQLDDIADTPALYLWRKNAPVDTTKTKTLDLGTAFHCRVLE 56 (265)
T ss_dssp CBCHHHHHHHHHCHHHHHHHTTSCCCCCCCSCCTHHHHHHHHHSS
T ss_pred CCCHHHHHHHhcCcHHHHHhccCCCCCCCcHHHHHHHHHHHHHhC
Confidence 699999999999999999966554 2477999999998753
No 69
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=80.16 E-value=2.2 Score=58.38 Aligned_cols=74 Identities=20% Similarity=0.274 Sum_probs=56.7
Q ss_pred hhcCCHHHHHHhc--cCCCCCEEEEecCCCCC----------------------CCCCCCEEEEeccHHHHHHHHHHHHh
Q 001127 245 LQSLNDQQLEAAC--GDMSTPLLIVAGPGSGK----------------------GISPSNILAMTFTTAAASEMRDRIGS 300 (1148)
Q Consensus 245 ~~~Ln~~Qr~aV~--~~~~~~~lI~G~AGSGK----------------------~~~~~~ILvltft~~Aa~ei~~RL~~ 300 (1148)
...||+-|.+++. ...+.+++|.||-|||| ...+.++++++++++.+.++.+.+.+
T Consensus 77 ~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~ 156 (1724)
T 4f92_B 77 FKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGK 156 (1724)
T ss_dssp CSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHH
Confidence 4579999999873 35577899999999999 01346899999999999999988876
Q ss_pred hhcccc------------------CCCceEechHHH
Q 001127 301 IVGKAT------------------AKELTISTFHSF 318 (1148)
Q Consensus 301 ~l~~~~------------------~~~v~V~Tfhs~ 318 (1148)
.++..+ ...+-|.|..+|
T Consensus 157 ~~~~~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkl 192 (1724)
T 4f92_B 157 RLATYGITVAELTGDHQLCKEEISATQIIVCTPEKW 192 (1724)
T ss_dssp HHTTTTCCEEECCSSCSSCCTTGGGCSEEEECHHHH
T ss_pred HHhhCCCEEEEEECCCCCCccccCCCCEEEECHHHH
Confidence 543210 124678999887
No 70
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=79.93 E-value=1.6 Score=55.13 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=46.9
Q ss_pred hhcCCHHHHHHhccC-CCCCEEEEecCCCCC-------------CCC---CCCEEEEeccHHHHHHHHHHHHhhhc
Q 001127 245 LQSLNDQQLEAACGD-MSTPLLIVAGPGSGK-------------GIS---PSNILAMTFTTAAASEMRDRIGSIVG 303 (1148)
Q Consensus 245 ~~~Ln~~Qr~aV~~~-~~~~~lI~G~AGSGK-------------~~~---~~~ILvltft~~Aa~ei~~RL~~~l~ 303 (1148)
...|++.|.+++... .+.+++|.++.|||| ... +.++||+++|+..+.+..+++.+..+
T Consensus 246 ~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 457899999998432 356799999999999 222 78999999999999999999887654
No 71
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=78.60 E-value=1.5 Score=46.34 Aligned_cols=35 Identities=29% Similarity=0.162 Sum_probs=29.9
Q ss_pred CcCEEEEecCccCCHHHHHHHHHHHc-CCcEEEEcC
Q 001127 475 SWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGD 509 (1148)
Q Consensus 475 ~fd~IiIDEfQDftp~q~~lL~~L~~-~~~l~lvGD 509 (1148)
.++.|+|||+|.+++.+..++..|.. +..++++|=
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl 124 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVANILAENGFVVIISGL 124 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECC
T ss_pred CCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEec
Confidence 58899999999999999999988876 457888873
No 72
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=78.49 E-value=0.62 Score=58.28 Aligned_cols=55 Identities=22% Similarity=0.080 Sum_probs=45.7
Q ss_pred hcCCHHHHHHhcc--CCCCCEEEEecCCCCC------------CCCCCCEEEEeccHHHHHHHHHHHHh
Q 001127 246 QSLNDQQLEAACG--DMSTPLLIVAGPGSGK------------GISPSNILAMTFTTAAASEMRDRIGS 300 (1148)
Q Consensus 246 ~~Ln~~Qr~aV~~--~~~~~~lI~G~AGSGK------------~~~~~~ILvltft~~Aa~ei~~RL~~ 300 (1148)
..|++.|.+++.. ..+.+++|.|+.|||| ...+.+++++++++.++.++.+++.+
T Consensus 22 ~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~ 90 (720)
T 2zj8_A 22 ESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQD 90 (720)
T ss_dssp CBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGG
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHH
Confidence 4789999999843 3467789999999999 11467999999999999999999953
No 73
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=77.75 E-value=0.59 Score=58.30 Aligned_cols=54 Identities=24% Similarity=0.166 Sum_probs=44.7
Q ss_pred hcCCHHHHHHhcc-CCCCCEEEEecCCCCC-----------CCCCCCEEEEeccHHHHHHHHHHHH
Q 001127 246 QSLNDQQLEAACG-DMSTPLLIVAGPGSGK-----------GISPSNILAMTFTTAAASEMRDRIG 299 (1148)
Q Consensus 246 ~~Ln~~Qr~aV~~-~~~~~~lI~G~AGSGK-----------~~~~~~ILvltft~~Aa~ei~~RL~ 299 (1148)
..|++.|++++.. ..+.+++|.|+.|||| ...+.+++++++++..+.++.+++.
T Consensus 24 ~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~ 89 (702)
T 2p6r_A 24 EELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFK 89 (702)
T ss_dssp -CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHH
Confidence 4689999999843 3467899999999999 1246799999999999999999994
No 74
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=77.74 E-value=1.6 Score=53.07 Aligned_cols=57 Identities=18% Similarity=0.156 Sum_probs=45.9
Q ss_pred hhcCCHHHHHHhccC-CCCCEEEEecCCCCC--------CCCCCCEEEEeccHHHHHHHHHHHHhh
Q 001127 245 LQSLNDQQLEAACGD-MSTPLLIVAGPGSGK--------GISPSNILAMTFTTAAASEMRDRIGSI 301 (1148)
Q Consensus 245 ~~~Ln~~Qr~aV~~~-~~~~~lI~G~AGSGK--------~~~~~~ILvltft~~Aa~ei~~RL~~~ 301 (1148)
...+.+.|+++|..- .+.+++|.+|.|||| ...++.+||++++...+.+..+++...
T Consensus 42 ~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~~g~~lVisP~~~L~~q~~~~l~~~ 107 (591)
T 2v1x_A 42 LEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQL 107 (591)
T ss_dssp CCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTSSSEEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHHHhc
Confidence 346789999998432 356799999999999 235679999999999999988888764
No 75
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=76.04 E-value=2 Score=44.93 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=28.8
Q ss_pred cCcCEEEEecCccCCHHHHHHHHHHHcC-CcEEEEc
Q 001127 474 DSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVG 508 (1148)
Q Consensus 474 ~~fd~IiIDEfQDftp~q~~lL~~L~~~-~~l~lvG 508 (1148)
..+++|+|||+|=|++.+...+..|+.. ..+++.|
T Consensus 100 ~~~dvV~IDEaQFf~~~~v~~l~~la~~gi~Vi~~G 135 (219)
T 3e2i_A 100 TNVDVIGIDEVQFFDDEIVSIVEKLSADGHRVIVAG 135 (219)
T ss_dssp TTCSEEEECCGGGSCTHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCCEEEEechhcCCHHHHHHHHHHHHCCCEEEEee
Confidence 4788999999999999999999988863 4566555
No 76
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=75.69 E-value=1.2 Score=55.39 Aligned_cols=57 Identities=18% Similarity=0.345 Sum_probs=45.8
Q ss_pred cCCHHHHHHhccCC-CCCEEEEecCCCCC-----------------CCCCCCEEEEeccHHHHHHH-HHHHHhhhc
Q 001127 247 SLNDQQLEAACGDM-STPLLIVAGPGSGK-----------------GISPSNILAMTFTTAAASEM-RDRIGSIVG 303 (1148)
Q Consensus 247 ~Ln~~Qr~aV~~~~-~~~~lI~G~AGSGK-----------------~~~~~~ILvltft~~Aa~ei-~~RL~~~l~ 303 (1148)
.|.+.|.+++.... +.+++|.++.|||| ...+.++||++++...+.+. .+++.+..+
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 57899999984322 46789999999999 11237899999999999999 998888765
No 77
>3l0a_A Putative exonuclease; RER070207002219, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; HET: PE4; 2.19A {Eubacterium rectale}
Probab=75.07 E-value=1.4 Score=47.65 Aligned_cols=41 Identities=2% Similarity=0.031 Sum_probs=34.9
Q ss_pred cccChhhhhHHh------hChhhhHHHhhcC-----cccchhhhHHHHHHHH
Q 001127 988 SGAATESMELLE------ACNGNSFLRRFSV-----EDRSIISHLFHQWAKK 1028 (1148)
Q Consensus 988 ~~~SvSrlE~~~------~CPf~~Fl~~~Gl-----~~a~~iGtl~H~~le~ 1028 (1148)
-.+|+|++-.|. .||..++.+--|- ..|..+|+++|..+|.
T Consensus 17 ~y~S~S~~k~f~~~~~~~~cea~~~a~l~g~~~~~~~~all~Gs~vH~~~E~ 68 (266)
T 3l0a_A 17 EYMSVSGYKDFAGTYGKMPCEFYGMEKLNGRWEDEKSTALLVGSYVDSYFEG 68 (266)
T ss_dssp HCEEHHHHHHHHCBTTBCCCHHHHHHHHHTSCCCCCCHHHHHHHHHHHHHHT
T ss_pred ceEcHHHHHHHHhhcccCCCHHHHHHHHcCCCCcCCCcHHHHhHHHHHHHHH
Confidence 369999999999 9999999955555 2388999999999986
No 78
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=73.16 E-value=2.9 Score=53.75 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=46.2
Q ss_pred hhcCCHHHHHHhccC-CCCCEEEEecCCCCC-------------CCC---CCCEEEEeccHHHHHHHHHHHHhhhc
Q 001127 245 LQSLNDQQLEAACGD-MSTPLLIVAGPGSGK-------------GIS---PSNILAMTFTTAAASEMRDRIGSIVG 303 (1148)
Q Consensus 245 ~~~Ln~~Qr~aV~~~-~~~~~lI~G~AGSGK-------------~~~---~~~ILvltft~~Aa~ei~~RL~~~l~ 303 (1148)
...|.+.|.+++... .+.+++|.++.|||| ... +.++||+++|+..+.+..+++.+..+
T Consensus 246 ~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 446899999998432 356789999999999 111 67899999999999999998887654
No 79
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=72.15 E-value=2 Score=43.79 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=28.1
Q ss_pred CcCEEEEecCccCCHHHHHHHHHHHc-CCcEEEEcC
Q 001127 475 SWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGD 509 (1148)
Q Consensus 475 ~fd~IiIDEfQDftp~q~~lL~~L~~-~~~l~lvGD 509 (1148)
.+++|+|||+|.+++.+...|..+.. +..++++|=
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~~~~Vi~~Gl 111 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGL 111 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHCCCCEEEEee
Confidence 57799999999998888888887776 446676664
No 80
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=72.07 E-value=4.7 Score=49.84 Aligned_cols=58 Identities=16% Similarity=0.098 Sum_probs=45.9
Q ss_pred hcCCHHHHHHhccC-CCCCEEEEecCCCCC--------------C--CCCCCEEEEeccHHHHHHHHHHHHhhhc
Q 001127 246 QSLNDQQLEAACGD-MSTPLLIVAGPGSGK--------------G--ISPSNILAMTFTTAAASEMRDRIGSIVG 303 (1148)
Q Consensus 246 ~~Ln~~Qr~aV~~~-~~~~~lI~G~AGSGK--------------~--~~~~~ILvltft~~Aa~ei~~RL~~~l~ 303 (1148)
..|.+.|.+++... .+.+++|.++.|||| . ..+.++|++++|+..+.+..+.+.+..+
T Consensus 12 ~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~ 86 (696)
T 2ykg_A 12 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFE 86 (696)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhc
Confidence 45799999998433 356899999999999 1 1227899999999999999998887653
No 81
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=71.16 E-value=2.2 Score=56.10 Aligned_cols=57 Identities=18% Similarity=0.123 Sum_probs=45.7
Q ss_pred cCCHHHHHHhccCC-----CC--CEEEEecCCCCC-----------CCCCCCEEEEeccHHHHHHHHHHHHhhhc
Q 001127 247 SLNDQQLEAACGDM-----ST--PLLIVAGPGSGK-----------GISPSNILAMTFTTAAASEMRDRIGSIVG 303 (1148)
Q Consensus 247 ~Ln~~Qr~aV~~~~-----~~--~~lI~G~AGSGK-----------~~~~~~ILvltft~~Aa~ei~~RL~~~l~ 303 (1148)
.+++.|++++..-. +. +++|.|+.|||| ...+.+++++++|+..+.++.+++.+.++
T Consensus 603 ~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~ 677 (1151)
T 2eyq_A 603 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFA 677 (1151)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhh
Confidence 46999999983211 22 689999999999 24567999999999999999999987654
No 82
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=70.26 E-value=2 Score=50.52 Aligned_cols=41 Identities=22% Similarity=0.240 Sum_probs=33.9
Q ss_pred CCCCCEEEEecCCCCCC------------CCCCCEEEEeccHHHHHHHHHHHH
Q 001127 259 DMSTPLLIVAGPGSGKG------------ISPSNILAMTFTTAAASEMRDRIG 299 (1148)
Q Consensus 259 ~~~~~~lI~G~AGSGK~------------~~~~~ILvltft~~Aa~ei~~RL~ 299 (1148)
..+.+++|.|+.||||+ ..+.++||+++|+..+.++.+++.
T Consensus 19 ~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~ 71 (459)
T 2z83_A 19 RKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR 71 (459)
T ss_dssp STTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTT
T ss_pred hcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhc
Confidence 34567888899999991 145789999999999999998885
No 83
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=67.68 E-value=2 Score=43.57 Aligned_cols=37 Identities=30% Similarity=0.454 Sum_probs=22.5
Q ss_pred EEEEecCCCCC--------CCCCCCEEEEeccHHHHHHHHHHHHhh
Q 001127 264 LLIVAGPGSGK--------GISPSNILAMTFTTAAASEMRDRIGSI 301 (1148)
Q Consensus 264 ~lI~G~AGSGK--------~~~~~~ILvltft~~Aa~ei~~RL~~~ 301 (1148)
++|+|+||||| .. +.+++++.-....-.+|.+|+...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC------CHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCCCCHHHHHHHHHH
Confidence 68999999999 33 556777665455567888887764
No 84
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=67.19 E-value=3.9 Score=52.91 Aligned_cols=75 Identities=11% Similarity=0.059 Sum_probs=54.7
Q ss_pred cCCHHHHHHhccCC---------------CCCEEEEecCCCCC-----------C--CCCCCEEEEeccHHHHHHHHHHH
Q 001127 247 SLNDQQLEAACGDM---------------STPLLIVAGPGSGK-----------G--ISPSNILAMTFTTAAASEMRDRI 298 (1148)
Q Consensus 247 ~Ln~~Qr~aV~~~~---------------~~~~lI~G~AGSGK-----------~--~~~~~ILvltft~~Aa~ei~~RL 298 (1148)
.+.+.|..||.... ....+|.++.|||| . ....++||+++++..+.++.+.+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~f 350 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKEY 350 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHHH
Confidence 57899999884211 24689999999999 1 23469999999999999998887
Q ss_pred Hhhhcc----------------ccCCCceEechHHHHHH
Q 001127 299 GSIVGK----------------ATAKELTISTFHSFSLQ 321 (1148)
Q Consensus 299 ~~~l~~----------------~~~~~v~V~Tfhs~a~r 321 (1148)
....+. .....+-|.|+++|...
T Consensus 351 ~~f~~~~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~ 389 (1038)
T 2w00_A 351 QRFSPDSVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNL 389 (1038)
T ss_dssp HTTSTTCSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHH
T ss_pred HHhcccccccccCHHHHHHHhcCCCCCEEEEEHHHHHHH
Confidence 664321 12346788999998764
No 85
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=65.50 E-value=4.4 Score=52.79 Aligned_cols=54 Identities=15% Similarity=0.022 Sum_probs=44.3
Q ss_pred CCHHHHHHhcc-CCCCCEEEEecCCCCC-----------CCCCCCEEEEeccHHHHHHHHHHHHhhh
Q 001127 248 LNDQQLEAACG-DMSTPLLIVAGPGSGK-----------GISPSNILAMTFTTAAASEMRDRIGSIV 302 (1148)
Q Consensus 248 Ln~~Qr~aV~~-~~~~~~lI~G~AGSGK-----------~~~~~~ILvltft~~Aa~ei~~RL~~~l 302 (1148)
+ +-|.+++.. -.+.+++|.|+.|||| ...+.++|++++|+..+.++.+++.+..
T Consensus 58 p-~iQ~~ai~~il~g~dvlv~apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~ 123 (1054)
T 1gku_B 58 R-AIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYA 123 (1054)
T ss_dssp C-HHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHH
Confidence 6 899998832 2356899999999999 2345789999999999999999998665
No 86
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=64.57 E-value=3.9 Score=41.98 Aligned_cols=40 Identities=15% Similarity=0.077 Sum_probs=29.9
Q ss_pred CcCEEEEecCccCCHHHHHHHHHHHc-CCcEEEEc---CCCCccc
Q 001127 475 SWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVG---DDDQSIF 515 (1148)
Q Consensus 475 ~fd~IiIDEfQDftp~q~~lL~~L~~-~~~l~lvG---D~~QsIy 515 (1148)
.+|+|+|||+|=| +.|..++..|.. +..+++.| |-....|
T Consensus 91 ~~DvIlIDEaQFf-k~~ve~~~~L~~~gk~VI~~GL~~DF~~~~F 134 (195)
T 1w4r_A 91 GVAVIGIDEGQFF-PDIVEFCEAMANAGKTVIVAALDGTFQRKPF 134 (195)
T ss_dssp TCSEEEESSGGGC-TTHHHHHHHHHHTTCEEEEEEESBCTTSSBC
T ss_pred CCCEEEEEchhhh-HHHHHHHHHHHHCCCeEEEEecccccccccc
Confidence 4789999999999 779999998887 44666665 5444433
No 87
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=64.36 E-value=2 Score=51.34 Aligned_cols=55 Identities=16% Similarity=0.114 Sum_probs=44.4
Q ss_pred hcCCHHHHHHhcc-CCCCCEEEEecCCCCC--------CCCCCCEEEEeccHHHHHHHHHHHHh
Q 001127 246 QSLNDQQLEAACG-DMSTPLLIVAGPGSGK--------GISPSNILAMTFTTAAASEMRDRIGS 300 (1148)
Q Consensus 246 ~~Ln~~Qr~aV~~-~~~~~~lI~G~AGSGK--------~~~~~~ILvltft~~Aa~ei~~RL~~ 300 (1148)
..+.+.|++++.. -.+.+++|.++.|||| ...++.+||+++++..+.+..+++..
T Consensus 24 ~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P~~aL~~q~~~~l~~ 87 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQLQA 87 (523)
T ss_dssp SSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHhCCCEEEECChHHHHHHHHHHHHH
Confidence 4678999999842 2356799999999999 22457899999999999998888875
No 88
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=63.40 E-value=3 Score=50.98 Aligned_cols=54 Identities=20% Similarity=0.195 Sum_probs=41.7
Q ss_pred CHHHHHHhc-----cCCCCCEEEEecCCCCC------------CCCCCCEEEEeccHHHHHHHHHHHHhhh
Q 001127 249 NDQQLEAAC-----GDMSTPLLIVAGPGSGK------------GISPSNILAMTFTTAAASEMRDRIGSIV 302 (1148)
Q Consensus 249 n~~Qr~aV~-----~~~~~~~lI~G~AGSGK------------~~~~~~ILvltft~~Aa~ei~~RL~~~l 302 (1148)
-+.|++++. ...++++++.+|.|||| ...+.+++++|.|+..+.++.+.+....
T Consensus 5 R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 5 RQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHh
Confidence 467877662 23467899999999999 1235799999999999999988776653
No 89
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=63.39 E-value=4.1 Score=47.35 Aligned_cols=39 Identities=23% Similarity=0.253 Sum_probs=32.1
Q ss_pred CCCEEEEecCCCCC------------CCCCCCEEEEeccHHHHHHHHHHHH
Q 001127 261 STPLLIVAGPGSGK------------GISPSNILAMTFTTAAASEMRDRIG 299 (1148)
Q Consensus 261 ~~~~lI~G~AGSGK------------~~~~~~ILvltft~~Aa~ei~~RL~ 299 (1148)
+.+++|.|+.|||| ...+.+++++++|+..+.++.+.+.
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~ 52 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR 52 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC
Confidence 35688999999999 1245699999999999999887764
No 90
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=62.74 E-value=29 Score=42.42 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=31.6
Q ss_pred cCcCEEEEecCccC---CHHHHHHHHHHHcCCcEEEEcCCCCc
Q 001127 474 DSWKAIIVDEFQDT---SAMQYSLLQILASHNRITIVGDDDQS 513 (1148)
Q Consensus 474 ~~fd~IiIDEfQDf---tp~q~~lL~~L~~~~~l~lvGD~~Qs 513 (1148)
..|++|+|||+|-+ +...+..+..+....++.+.|-|-|.
T Consensus 191 ~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN 233 (644)
T 1z3i_X 191 GKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQN 233 (644)
T ss_dssp SCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGG
T ss_pred CCccEEEEECceecCChhhHHHHHHHhcccCcEEEEecCcccC
Confidence 47899999999986 45666777777556689999999885
No 91
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=62.35 E-value=4.5 Score=49.00 Aligned_cols=49 Identities=20% Similarity=0.121 Sum_probs=30.7
Q ss_pred cCCHHHHHHhccC------CCCCEEEEecCCCCC-------------CC-------CCCCEEEEeccHHHHHHHH
Q 001127 247 SLNDQQLEAACGD------MSTPLLIVAGPGSGK-------------GI-------SPSNILAMTFTTAAASEMR 295 (1148)
Q Consensus 247 ~Ln~~Qr~aV~~~------~~~~~lI~G~AGSGK-------------~~-------~~~~ILvltft~~Aa~ei~ 295 (1148)
.|.+.|.++|..- ..+.++|.++.|||| .. ...++|++++++..+.+..
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~ 252 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPK 252 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC---------
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHH
Confidence 6899999998421 235578889999999 22 5689999999999999887
No 92
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=61.84 E-value=13 Score=46.42 Aligned_cols=97 Identities=19% Similarity=0.251 Sum_probs=67.7
Q ss_pred cCCHHHHHHhccCCCCCEEEEecCCCCC-----------CCCCCCEEEEeccHHHHHHHHHHHHhhh---ccc------c
Q 001127 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK-----------GISPSNILAMTFTTAAASEMRDRIGSIV---GKA------T 306 (1148)
Q Consensus 247 ~Ln~~Qr~aV~~~~~~~~lI~G~AGSGK-----------~~~~~~ILvltft~~Aa~ei~~RL~~~l---~~~------~ 306 (1148)
..++-|..++-.-..|. +..+..|||| ...+..++|+|+|+-.|.+..+.+.... +-. +
T Consensus 83 ~pt~VQ~~~ip~ll~G~-Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg 161 (844)
T 1tf5_A 83 FPFKVQLMGGVALHDGN-IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNS 161 (844)
T ss_dssp CCCHHHHHHHHHHHTTS-EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTT
T ss_pred CCcHHHHHhhHHHhCCC-EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCC
Confidence 67899999874334566 7789999999 2456689999999999998877665543 210 0
Q ss_pred ----------CCCceEechHHHHHHHHHHHHH----Hh-cCCCCceecChHHH
Q 001127 307 ----------AKELTISTFHSFSLQLCRSHAE----KL-ERTSEFLIYGHGQQ 344 (1148)
Q Consensus 307 ----------~~~v~V~Tfhs~a~rIl~~~~~----~~-~~~~~~~i~~~~~~ 344 (1148)
...+.|.|..+|++..++.+-. .. ...-.+.++++.+.
T Consensus 162 ~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~ 214 (844)
T 1tf5_A 162 MSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDS 214 (844)
T ss_dssp SCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHH
T ss_pred CCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhh
Confidence 1347899999999998887531 11 12334677887664
No 93
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=60.81 E-value=3.6 Score=49.38 Aligned_cols=54 Identities=24% Similarity=0.196 Sum_probs=40.8
Q ss_pred cCCHHHHHHhc-----cCCCCCEEEEecCCCCC--------CCCCCCEEEEeccHHHHHHHHHHHHh
Q 001127 247 SLNDQQLEAAC-----GDMSTPLLIVAGPGSGK--------GISPSNILAMTFTTAAASEMRDRIGS 300 (1148)
Q Consensus 247 ~Ln~~Qr~aV~-----~~~~~~~lI~G~AGSGK--------~~~~~~ILvltft~~Aa~ei~~RL~~ 300 (1148)
.+.+.|++++. ...+++++|.+|.|||| .....+++++|+|+..+.++.+.+..
T Consensus 7 ~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~~~~~~~~~~t~~l~~q~~~~~~~ 73 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQLKKKVLIFTRTHSQLDSIYKNAKL 73 (540)
T ss_dssp --CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHh
Confidence 45678888642 12456789999999999 22357999999999999999887765
No 94
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=60.31 E-value=4 Score=39.42 Aligned_cols=16 Identities=19% Similarity=0.648 Sum_probs=14.2
Q ss_pred CCCCCEEEEecCCCCC
Q 001127 259 DMSTPLLIVAGPGSGK 274 (1148)
Q Consensus 259 ~~~~~~lI~G~AGSGK 274 (1148)
....+++|.|+|||||
T Consensus 22 ~~~~~vll~G~~GtGK 37 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGR 37 (145)
T ss_dssp TCCSCEEEESSTTSSH
T ss_pred CCCCCEEEECCCCCCH
Confidence 4567899999999999
No 95
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=60.09 E-value=4.3 Score=47.36 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=33.3
Q ss_pred CCCCEEEEecCCCCC------------CCCCCCEEEEeccHHHHHHHHHHHH
Q 001127 260 MSTPLLIVAGPGSGK------------GISPSNILAMTFTTAAASEMRDRIG 299 (1148)
Q Consensus 260 ~~~~~lI~G~AGSGK------------~~~~~~ILvltft~~Aa~ei~~RL~ 299 (1148)
.+.+++|.|+.|||| ...+.+++++++|+..+.++.+.+.
T Consensus 7 ~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~ 58 (440)
T 1yks_A 7 KGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFH 58 (440)
T ss_dssp TTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHh
Confidence 356788999999999 1234689999999999999998886
No 96
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=59.83 E-value=5.7 Score=48.69 Aligned_cols=43 Identities=21% Similarity=0.202 Sum_probs=35.4
Q ss_pred CCCEEEEecCCCCC--------CCCCCCEEEEeccHHHHHHHHHHHHhhhc
Q 001127 261 STPLLIVAGPGSGK--------GISPSNILAMTFTTAAASEMRDRIGSIVG 303 (1148)
Q Consensus 261 ~~~~lI~G~AGSGK--------~~~~~~ILvltft~~Aa~ei~~RL~~~l~ 303 (1148)
+..+++.|+.|||| ...+.++||+++|+.++.++.+++.+..+
T Consensus 232 ~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~PTReLA~Qia~~l~~~~g 282 (666)
T 3o8b_A 232 FQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHG 282 (666)
T ss_dssp CEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHS
T ss_pred CCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcchHHHHHHHHHHHHHHhC
Confidence 34578889999999 22456999999999999999998877654
No 97
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=56.15 E-value=4.6 Score=48.54 Aligned_cols=54 Identities=20% Similarity=0.074 Sum_probs=41.5
Q ss_pred CCHHHHHHhc-----cCCCCCEEEEecCCCCC--------CCCCCCEEEEeccHHHHHHHHHHHHhh
Q 001127 248 LNDQQLEAAC-----GDMSTPLLIVAGPGSGK--------GISPSNILAMTFTTAAASEMRDRIGSI 301 (1148)
Q Consensus 248 Ln~~Qr~aV~-----~~~~~~~lI~G~AGSGK--------~~~~~~ILvltft~~Aa~ei~~RL~~~ 301 (1148)
+-+.|++++. ...+++++|.++.|||| ...+.+++++|+|+..+.++.+.+...
T Consensus 4 ~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~~~~v~i~~pt~~l~~q~~~~~~~l 70 (551)
T 3crv_A 4 LRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPIYRDLTKI 70 (551)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHHCSEEEEEESSGGGHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHH
Confidence 4577888552 22456789999999999 224579999999999999998777654
No 98
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=55.66 E-value=6.3 Score=46.07 Aligned_cols=39 Identities=23% Similarity=0.347 Sum_probs=31.4
Q ss_pred CCCEEEEecCCCCCC------------CCCCCEEEEeccHHHHHHHHHHHH
Q 001127 261 STPLLIVAGPGSGKG------------ISPSNILAMTFTTAAASEMRDRIG 299 (1148)
Q Consensus 261 ~~~~lI~G~AGSGK~------------~~~~~ILvltft~~Aa~ei~~RL~ 299 (1148)
...++|.|+.||||+ ..+.++|++++|+..+.++.+++.
T Consensus 19 ~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~ 69 (451)
T 2jlq_A 19 KRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALR 69 (451)
T ss_dssp TCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhc
Confidence 334588899999991 245799999999999999988773
No 99
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=55.57 E-value=5.9 Score=49.71 Aligned_cols=54 Identities=17% Similarity=0.181 Sum_probs=39.6
Q ss_pred CHHHHHHhcc--CCCCCEEEEecCCCCC-----------C-CC--CCCEEEEeccHHHHHHHHHHHHhhh
Q 001127 249 NDQQLEAACG--DMSTPLLIVAGPGSGK-----------G-IS--PSNILAMTFTTAAASEMRDRIGSIV 302 (1148)
Q Consensus 249 n~~Qr~aV~~--~~~~~~lI~G~AGSGK-----------~-~~--~~~ILvltft~~Aa~ei~~RL~~~l 302 (1148)
...|++++.. ..+..++|.|+.|||| . .. +.+++++.+++.++.++.+++...+
T Consensus 95 ~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~ 164 (773)
T 2xau_A 95 VHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEM 164 (773)
T ss_dssp GGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHh
Confidence 4567666632 2244688999999999 1 11 4569999999999999999887654
No 100
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=53.77 E-value=23 Score=44.44 Aligned_cols=97 Identities=18% Similarity=0.233 Sum_probs=67.2
Q ss_pred cCCHHHHHHhccCCCCCEEEEecCCCCC-----------CCCCCCEEEEeccHHHHHHHHHHHHhhh---ccc------c
Q 001127 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK-----------GISPSNILAMTFTTAAASEMRDRIGSIV---GKA------T 306 (1148)
Q Consensus 247 ~Ln~~Qr~aV~~~~~~~~lI~G~AGSGK-----------~~~~~~ILvltft~~Aa~ei~~RL~~~l---~~~------~ 306 (1148)
..++-|..++..-..|. +..+..|||| ...+..++|+|+|+-.|.+..+.+.... +-. +
T Consensus 111 rP~~VQ~~~ip~Ll~G~-Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg 189 (922)
T 1nkt_A 111 RPFDVQVMGAAALHLGN-VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILAT 189 (922)
T ss_dssp CCCHHHHHHHHHHHTTE-EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTT
T ss_pred CCCHHHHHHHHhHhcCC-EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCC
Confidence 56888998874334555 7779999999 2446789999999999988777665442 210 0
Q ss_pred ----------CCCceEechHHHHHHHHHHHH-----HHhcCCCCceecChHHH
Q 001127 307 ----------AKELTISTFHSFSLQLCRSHA-----EKLERTSEFLIYGHGQQ 344 (1148)
Q Consensus 307 ----------~~~v~V~Tfhs~a~rIl~~~~-----~~~~~~~~~~i~~~~~~ 344 (1148)
...+.++|..+|++..|+..- ......-.+.++++.+.
T Consensus 190 ~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDs 242 (922)
T 1nkt_A 190 MTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDS 242 (922)
T ss_dssp CCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHH
T ss_pred CCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHH
Confidence 135789999999988888752 11122345778888763
No 101
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=53.29 E-value=6.2 Score=37.99 Aligned_cols=16 Identities=19% Similarity=0.416 Sum_probs=13.9
Q ss_pred CCCCCEEEEecCCCCC
Q 001127 259 DMSTPLLIVAGPGSGK 274 (1148)
Q Consensus 259 ~~~~~~lI~G~AGSGK 274 (1148)
....+++|.|+|||||
T Consensus 25 ~~~~~vll~G~~GtGK 40 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPF 40 (143)
T ss_dssp TCSSCEEEEEETTCCH
T ss_pred CCCCcEEEECCCCccH
Confidence 3467899999999999
No 102
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=53.08 E-value=7 Score=48.19 Aligned_cols=41 Identities=20% Similarity=0.209 Sum_probs=33.7
Q ss_pred CCCCEEEEecCCCCC------------CCCCCCEEEEeccHHHHHHHHHHHHh
Q 001127 260 MSTPLLIVAGPGSGK------------GISPSNILAMTFTTAAASEMRDRIGS 300 (1148)
Q Consensus 260 ~~~~~lI~G~AGSGK------------~~~~~~ILvltft~~Aa~ei~~RL~~ 300 (1148)
.+.+++|.|+.|||| ...+.++||+++|+..+.++.+++..
T Consensus 240 ~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~ 292 (673)
T 2wv9_A 240 KRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRG 292 (673)
T ss_dssp TTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhc
Confidence 356788899999999 12346899999999999999988763
No 103
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=51.48 E-value=7 Score=47.68 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=33.2
Q ss_pred CCCCEEEEecCCCCCC------------CCCCCEEEEeccHHHHHHHHHHHH
Q 001127 260 MSTPLLIVAGPGSGKG------------ISPSNILAMTFTTAAASEMRDRIG 299 (1148)
Q Consensus 260 ~~~~~lI~G~AGSGK~------------~~~~~ILvltft~~Aa~ei~~RL~ 299 (1148)
.+.++++.|+.||||. ..+.++||+++|+..+.++.+++.
T Consensus 185 ~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~ 236 (618)
T 2whx_A 185 KKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR 236 (618)
T ss_dssp TTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhc
Confidence 4567888899999991 235689999999999999998875
No 104
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=50.70 E-value=11 Score=39.76 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=26.0
Q ss_pred CcCEEEEecCccCCHHHHHHHHHHHc-CCcEEEEc
Q 001127 475 SWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVG 508 (1148)
Q Consensus 475 ~fd~IiIDEfQDftp~q~~lL~~L~~-~~~l~lvG 508 (1148)
.+|+|+|||+|-|+. -..++..+.. +..+++.|
T Consensus 90 ~~dvViIDEaQF~~~-v~el~~~l~~~gi~VI~~G 123 (234)
T 2orv_A 90 GVAVIGIDEGQFFPD-IVEFCEAMANAGKTVIVAA 123 (234)
T ss_dssp TCSEEEESSGGGCTT-HHHHHHHHHHTTCEEEEEC
T ss_pred cCCEEEEEchhhhhh-HHHHHHHHHhCCCEEEEEe
Confidence 588999999999986 6677777766 44677775
No 105
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=48.11 E-value=5 Score=41.58 Aligned_cols=12 Identities=50% Similarity=1.088 Sum_probs=10.6
Q ss_pred EEEEecCCCCCC
Q 001127 264 LLIVAGPGSGKG 275 (1148)
Q Consensus 264 ~lI~G~AGSGK~ 275 (1148)
++|+|||||||+
T Consensus 3 Iil~GpPGsGKg 14 (206)
T 3sr0_A 3 LVFLGPPGAGKG 14 (206)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 678899999995
No 106
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=47.24 E-value=5.4 Score=41.72 Aligned_cols=13 Identities=54% Similarity=1.224 Sum_probs=10.8
Q ss_pred CEEEEecCCCCCC
Q 001127 263 PLLIVAGPGSGKG 275 (1148)
Q Consensus 263 ~~lI~G~AGSGK~ 275 (1148)
.++|+|||||||+
T Consensus 31 iI~llGpPGsGKg 43 (217)
T 3umf_A 31 VIFVLGGPGSGKG 43 (217)
T ss_dssp EEEEECCTTCCHH
T ss_pred EEEEECCCCCCHH
Confidence 3677899999994
No 107
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=46.66 E-value=7.4 Score=38.45 Aligned_cols=15 Identities=27% Similarity=0.605 Sum_probs=12.8
Q ss_pred CCCCEEEEecCCCCC
Q 001127 260 MSTPLLIVAGPGSGK 274 (1148)
Q Consensus 260 ~~~~~lI~G~AGSGK 274 (1148)
..++++|.|+|||||
T Consensus 42 ~~~~~ll~G~~G~GK 56 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGK 56 (195)
T ss_dssp SSCEEEEECCTTSCH
T ss_pred CCCceEEECCCCCCH
Confidence 346789999999999
No 108
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=45.72 E-value=5.1 Score=44.55 Aligned_cols=20 Identities=15% Similarity=0.127 Sum_probs=15.3
Q ss_pred HhccCCCCCEEEEecCCCCC
Q 001127 255 AACGDMSTPLLIVAGPGSGK 274 (1148)
Q Consensus 255 aV~~~~~~~~lI~G~AGSGK 274 (1148)
++.....++++|.|+|||||
T Consensus 39 ~i~~~~~~~lli~GpPGTGK 58 (318)
T 3te6_A 39 SLMSSQNKLFYITNADDSTK 58 (318)
T ss_dssp HHHTTCCCEEEEECCCSHHH
T ss_pred HhcCCCCCeEEEECCCCCCH
Confidence 33344566789999999999
No 109
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=45.50 E-value=5.1 Score=40.06 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=22.9
Q ss_pred CcCEEEEecCc--cCCHHHHHHHHHHH-----cCCcEEEEcC
Q 001127 475 SWKAIIVDEFQ--DTSAMQYSLLQILA-----SHNRITIVGD 509 (1148)
Q Consensus 475 ~fd~IiIDEfQ--Dftp~q~~lL~~L~-----~~~~l~lvGD 509 (1148)
..+.+++||+. ..++.....+..+. .+..++++..
T Consensus 100 ~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn 141 (180)
T 3ec2_A 100 NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTN 141 (180)
T ss_dssp TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 45699999997 67777666655443 2445666654
No 110
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=44.07 E-value=8.8 Score=38.96 Aligned_cols=13 Identities=31% Similarity=0.406 Sum_probs=12.1
Q ss_pred CCEEEEecCCCCC
Q 001127 262 TPLLIVAGPGSGK 274 (1148)
Q Consensus 262 ~~~lI~G~AGSGK 274 (1148)
.+++|.|++||||
T Consensus 55 ~~~~l~G~~GtGK 67 (202)
T 2w58_A 55 KGLYLHGSFGVGK 67 (202)
T ss_dssp CEEEEECSTTSSH
T ss_pred CeEEEECCCCCCH
Confidence 6799999999999
No 111
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=43.51 E-value=9.7 Score=38.76 Aligned_cols=31 Identities=16% Similarity=0.127 Sum_probs=20.2
Q ss_pred HhhcCCHHHHHHhccCCCCCEEEEecCCCCC
Q 001127 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK 274 (1148)
Q Consensus 244 ~~~~Ln~~Qr~aV~~~~~~~~lI~G~AGSGK 274 (1148)
....++..++.......+..+.|.|++||||
T Consensus 8 ~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGK 38 (200)
T 3uie_A 8 HECSVEKVDRQRLLDQKGCVIWVTGLSGSGK 38 (200)
T ss_dssp --CCCCHHHHHHHHTSCCEEEEEECSTTSSH
T ss_pred cccccCHHHHHHhcCCCCeEEEEECCCCCCH
Confidence 3445677777666333344567789999999
No 112
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=43.50 E-value=35 Score=42.60 Aligned_cols=97 Identities=14% Similarity=0.180 Sum_probs=66.0
Q ss_pred hcCCHHHHHHhccCCCCCEEEEecCCCCC-----------CCCCCCEEEEeccHHHHHHHHHHHHhhh---ccc------
Q 001127 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGK-----------GISPSNILAMTFTTAAASEMRDRIGSIV---GKA------ 305 (1148)
Q Consensus 246 ~~Ln~~Qr~aV~~~~~~~~lI~G~AGSGK-----------~~~~~~ILvltft~~Aa~ei~~RL~~~l---~~~------ 305 (1148)
...++-|..++-.-..|. +..+..|||| ...+..++|+|+|+..|.+..+.+.... +-.
T Consensus 73 ~~p~~VQ~~~i~~ll~G~-Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~G 151 (853)
T 2fsf_A 73 MRHFDVQLLGGMVLNERC-IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLP 151 (853)
T ss_dssp CCCCHHHHHHHHHHHSSE-EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCT
T ss_pred CCCChHHHhhcccccCCe-eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 466899998874334555 7778999999 2345689999999999988877665543 110
Q ss_pred c----------CCCceEechHHHHHHHHHHHHH-----HhcCCCCceecChHH
Q 001127 306 T----------AKELTISTFHSFSLQLCRSHAE-----KLERTSEFLIYGHGQ 343 (1148)
Q Consensus 306 ~----------~~~v~V~Tfhs~a~rIl~~~~~-----~~~~~~~~~i~~~~~ 343 (1148)
+ ...+-|.|..+|.+..++..-. .....-.+.++++.+
T Consensus 152 G~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD 204 (853)
T 2fsf_A 152 GMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVD 204 (853)
T ss_dssp TCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHH
T ss_pred CCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchH
Confidence 0 1347889999998888886521 111233467778765
No 113
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=43.24 E-value=20 Score=38.11 Aligned_cols=16 Identities=38% Similarity=0.831 Sum_probs=13.9
Q ss_pred CCCCCEEEEecCCCCC
Q 001127 259 DMSTPLLIVAGPGSGK 274 (1148)
Q Consensus 259 ~~~~~~lI~G~AGSGK 274 (1148)
....+++|.|+|||||
T Consensus 27 ~~~~~vll~G~~GtGK 42 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGK 42 (265)
T ss_dssp TSCSCEEEECCTTSCH
T ss_pred CCCCCEEEECCCCCcH
Confidence 3467899999999999
No 114
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=42.99 E-value=12 Score=36.27 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=20.3
Q ss_pred hcCCHHHHHHhccCCCCCEEEEecCCCCCC
Q 001127 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGKG 275 (1148)
Q Consensus 246 ~~Ln~~Qr~aV~~~~~~~~lI~G~AGSGK~ 275 (1148)
...|.++..++..-.+..+.|.|++||||.
T Consensus 21 ~g~n~~~~~~l~~~~g~~~~l~G~~G~GKT 50 (149)
T 2kjq_A 21 GTENAELVYVLRHKHGQFIYVWGEEGAGKS 50 (149)
T ss_dssp SCCTHHHHHHCCCCCCSEEEEESSSTTTTC
T ss_pred cCccHHHHHHHHhcCCCEEEEECCCCCCHH
Confidence 345666666653223446788899999994
No 115
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=42.89 E-value=8.6 Score=39.83 Aligned_cols=16 Identities=13% Similarity=0.111 Sum_probs=13.5
Q ss_pred CCCCEEEEecCCCCCC
Q 001127 260 MSTPLLIVAGPGSGKG 275 (1148)
Q Consensus 260 ~~~~~lI~G~AGSGK~ 275 (1148)
...+++|.|+|||||.
T Consensus 51 ~~~~~ll~G~~G~GKT 66 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRT 66 (242)
T ss_dssp SCSEEEEECSTTSSHH
T ss_pred CCCeEEEECCCCCCHH
Confidence 4567899999999993
No 116
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=41.62 E-value=7.4 Score=38.40 Aligned_cols=15 Identities=27% Similarity=0.618 Sum_probs=12.9
Q ss_pred CCCCEEEEecCCCCC
Q 001127 260 MSTPLLIVAGPGSGK 274 (1148)
Q Consensus 260 ~~~~~lI~G~AGSGK 274 (1148)
..++++|.|+|||||
T Consensus 42 ~~~~vll~G~~G~GK 56 (187)
T 2p65_A 42 TKNNPILLGDPGVGK 56 (187)
T ss_dssp SSCEEEEESCGGGCH
T ss_pred CCCceEEECCCCCCH
Confidence 356789999999999
No 117
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=41.42 E-value=11 Score=38.32 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=19.2
Q ss_pred CcCEEEEecCccCCHHHHHHHHHHHc
Q 001127 475 SWKAIIVDEFQDTSAMQYSLLQILAS 500 (1148)
Q Consensus 475 ~fd~IiIDEfQDftp~q~~lL~~L~~ 500 (1148)
....|+|||++.+++.....|..+..
T Consensus 102 ~~~vliiDe~~~l~~~~~~~l~~~l~ 127 (226)
T 2chg_A 102 PFKIIFLDEADALTADAQAALRRTME 127 (226)
T ss_dssp SCEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred CceEEEEeChhhcCHHHHHHHHHHHH
Confidence 45689999999999876665555443
No 118
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=40.83 E-value=14 Score=45.54 Aligned_cols=40 Identities=15% Similarity=0.053 Sum_probs=31.7
Q ss_pred CCEEEEecCCCCC-------CCCCCCEEEEeccHHHHHHHHHHHHhh
Q 001127 262 TPLLIVAGPGSGK-------GISPSNILAMTFTTAAASEMRDRIGSI 301 (1148)
Q Consensus 262 ~~~lI~G~AGSGK-------~~~~~~ILvltft~~Aa~ei~~RL~~~ 301 (1148)
..++|.|+.|||| .....+.+++++|+.++.++.+++.+.
T Consensus 156 k~vlv~apTGSGKT~~al~~l~~~~~gl~l~PtR~LA~Qi~~~l~~~ 202 (677)
T 3rc3_A 156 KIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFEKSNAA 202 (677)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSSSEEEEESSHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCeEEEeCHHHHHHHHHHHHHhc
Confidence 4678889999999 112245599999999999999998763
No 119
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=40.14 E-value=16 Score=44.84 Aligned_cols=42 Identities=12% Similarity=0.205 Sum_probs=34.9
Q ss_pred CEEEEecCCCCC--------CCCCCCEEEEeccHHHHHHHHHHHHhhhcc
Q 001127 263 PLLIVAGPGSGK--------GISPSNILAMTFTTAAASEMRDRIGSIVGK 304 (1148)
Q Consensus 263 ~~lI~G~AGSGK--------~~~~~~ILvltft~~Aa~ei~~RL~~~l~~ 304 (1148)
...+.|.+|||| ...+..+||++++...|.++...|...++.
T Consensus 30 ~~~l~g~tgs~kt~~~a~~~~~~~~~~lvv~~~~~~A~ql~~el~~~~~~ 79 (664)
T 1c4o_A 30 FVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAEFRELFPE 79 (664)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHHHCTT
T ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecCHHHHHHHHHHHHHHCCC
Confidence 467889999999 122457999999999999999999988653
No 120
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.27 E-value=16 Score=41.94 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=18.5
Q ss_pred CHHHHHHhccCCCCCEEEEecCCCCCC
Q 001127 249 NDQQLEAACGDMSTPLLIVAGPGSGKG 275 (1148)
Q Consensus 249 n~~Qr~aV~~~~~~~~lI~G~AGSGK~ 275 (1148)
+++-.+........-+++.|||||||+
T Consensus 170 ~pe~f~~~gi~~prGvLL~GPPGTGKT 196 (405)
T 4b4t_J 170 HPELFESLGIAQPKGVILYGPPGTGKT 196 (405)
T ss_dssp CHHHHHHHTCCCCCCEEEESCSSSSHH
T ss_pred CHHHHHhCCCCCCCceEEeCCCCCCHH
Confidence 555555443344455899999999993
No 121
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=36.64 E-value=11 Score=38.31 Aligned_cols=14 Identities=43% Similarity=0.819 Sum_probs=12.5
Q ss_pred CCCEEEEecCCCCC
Q 001127 261 STPLLIVAGPGSGK 274 (1148)
Q Consensus 261 ~~~~lI~G~AGSGK 274 (1148)
+.|++|.||+|+||
T Consensus 1 ~RpIVi~GPSG~GK 14 (186)
T 1ex7_A 1 SRPIVISGPSGTGK 14 (186)
T ss_dssp CCCEEEECCTTSSH
T ss_pred CCEEEEECCCCCCH
Confidence 35789999999999
No 122
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=35.96 E-value=15 Score=39.37 Aligned_cols=16 Identities=31% Similarity=0.669 Sum_probs=13.6
Q ss_pred CCCCCEEEEecCCCCC
Q 001127 259 DMSTPLLIVAGPGSGK 274 (1148)
Q Consensus 259 ~~~~~~lI~G~AGSGK 274 (1148)
....+++|.|+|||||
T Consensus 49 ~~~~~~ll~G~~GtGK 64 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGK 64 (285)
T ss_dssp CCCSEEEEESSSSSSH
T ss_pred CCCCeEEEECCCCCcH
Confidence 4456799999999999
No 123
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=35.92 E-value=15 Score=38.16 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=26.1
Q ss_pred CCCCEEEEecCCCCC-----------CCCCCCEEEEeccHHHHHHHHHHHH
Q 001127 260 MSTPLLIVAGPGSGK-----------GISPSNILAMTFTTAAASEMRDRIG 299 (1148)
Q Consensus 260 ~~~~~lI~G~AGSGK-----------~~~~~~ILvltft~~Aa~ei~~RL~ 299 (1148)
.+..++|.|+||||| ...++++++++.... ..++.+++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHH
Confidence 344578889999999 124568888886553 455555554
No 124
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=35.54 E-value=8.1 Score=40.05 Aligned_cols=14 Identities=21% Similarity=0.363 Sum_probs=11.9
Q ss_pred CCCEEEEecCCCCC
Q 001127 261 STPLLIVAGPGSGK 274 (1148)
Q Consensus 261 ~~~~lI~G~AGSGK 274 (1148)
.+.++|.|||||||
T Consensus 58 kn~ili~GPPGtGK 71 (212)
T 1tue_A 58 KNCLVFCGPANTGK 71 (212)
T ss_dssp CSEEEEESCGGGCH
T ss_pred ccEEEEECCCCCCH
Confidence 34589999999999
No 125
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=35.52 E-value=11 Score=39.76 Aligned_cols=15 Identities=33% Similarity=0.687 Sum_probs=13.0
Q ss_pred CCCCEEEEecCCCCC
Q 001127 260 MSTPLLIVAGPGSGK 274 (1148)
Q Consensus 260 ~~~~~lI~G~AGSGK 274 (1148)
...+++|.|+|||||
T Consensus 38 ~~~~vll~G~~GtGK 52 (262)
T 2qz4_A 38 VPKGALLLGPPGCGK 52 (262)
T ss_dssp CCCEEEEESCTTSSH
T ss_pred CCceEEEECCCCCCH
Confidence 456789999999999
No 126
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=34.60 E-value=11 Score=40.94 Aligned_cols=14 Identities=29% Similarity=0.648 Sum_probs=12.3
Q ss_pred CCCEEEEecCCCCC
Q 001127 261 STPLLIVAGPGSGK 274 (1148)
Q Consensus 261 ~~~~lI~G~AGSGK 274 (1148)
..+++|.|+|||||
T Consensus 67 ~~~vll~G~~GtGK 80 (309)
T 3syl_A 67 TLHMSFTGNPGTGK 80 (309)
T ss_dssp CCEEEEEECTTSSH
T ss_pred CceEEEECCCCCCH
Confidence 44689999999999
No 127
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.59 E-value=14 Score=42.85 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=16.6
Q ss_pred CHHHHHHhccCCCCCEEEEecCCCCC
Q 001127 249 NDQQLEAACGDMSTPLLIVAGPGSGK 274 (1148)
Q Consensus 249 n~~Qr~aV~~~~~~~~lI~G~AGSGK 274 (1148)
+++...........-++++|||||||
T Consensus 203 ~pe~f~~~g~~~prGvLLyGPPGTGK 228 (434)
T 4b4t_M 203 RADKFKDMGIRAPKGALMYGPPGTGK 228 (434)
T ss_dssp CSHHHHHHCCCCCCEEEEESCTTSSH
T ss_pred CHHHHHhCCCCCCCeeEEECcCCCCH
Confidence 34433333233345589999999999
No 128
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.25 E-value=17 Score=41.95 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=17.4
Q ss_pred CHHHHHHhccCCCCCEEEEecCCCCC
Q 001127 249 NDQQLEAACGDMSTPLLIVAGPGSGK 274 (1148)
Q Consensus 249 n~~Qr~aV~~~~~~~~lI~G~AGSGK 274 (1148)
+++-..........-++++|||||||
T Consensus 194 ~p~~~~~~g~~~prGiLL~GPPGtGK 219 (428)
T 4b4t_K 194 QADLYEQIGIDPPRGVLLYGPPGTGK 219 (428)
T ss_dssp CHHHHHHHCCCCCCEEEEESCTTTTH
T ss_pred CHHHHHhCCCCCCceEEEECCCCCCH
Confidence 55555444333344589999999999
No 129
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.75 E-value=18 Score=42.01 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=17.5
Q ss_pred CHHHHHHhccCCCCCEEEEecCCCCC
Q 001127 249 NDQQLEAACGDMSTPLLIVAGPGSGK 274 (1148)
Q Consensus 249 n~~Qr~aV~~~~~~~~lI~G~AGSGK 274 (1148)
+++-..........-++++|||||||
T Consensus 203 ~p~~f~~~g~~~prGvLL~GPPGtGK 228 (437)
T 4b4t_L 203 NPEIFQRVGIKPPKGVLLYGPPGTGK 228 (437)
T ss_dssp CHHHHHHHCCCCCCEEEEESCTTSSH
T ss_pred CHHHHHhCCCCCCCeEEEECCCCCcH
Confidence 55554444333445589999999999
No 130
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=33.47 E-value=12 Score=36.46 Aligned_cols=30 Identities=10% Similarity=0.140 Sum_probs=21.5
Q ss_pred cCEEEEecCccCCHHHHHHHHHHHcCCcEEEE
Q 001127 476 WKAIIVDEFQDTSAMQYSLLQILASHNRITIV 507 (1148)
Q Consensus 476 fd~IiIDEfQDftp~q~~lL~~L~~~~~l~lv 507 (1148)
.+.|++|++ .++.+...+..+.....+++.
T Consensus 78 ~~~vi~dg~--~~~~~~~~l~~~~~~~~~~i~ 107 (179)
T 3lw7_A 78 HDLVVFDGV--RSLAEVEEFKRLLGDSVYIVA 107 (179)
T ss_dssp CSCEEEECC--CCHHHHHHHHHHHCSCEEEEE
T ss_pred CCeEEEeCC--CCHHHHHHHHHHhCCCcEEEE
Confidence 457999998 889998888887754333333
No 131
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=33.27 E-value=13 Score=40.93 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=12.6
Q ss_pred CCCEEEEecCCCCC
Q 001127 261 STPLLIVAGPGSGK 274 (1148)
Q Consensus 261 ~~~~lI~G~AGSGK 274 (1148)
..+++|.|+|||||
T Consensus 152 ~~~lll~G~~GtGK 165 (308)
T 2qgz_A 152 QKGLYLYGDMGIGK 165 (308)
T ss_dssp CCEEEEECSTTSSH
T ss_pred CceEEEECCCCCCH
Confidence 46799999999999
No 132
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=32.62 E-value=12 Score=36.77 Aligned_cols=11 Identities=55% Similarity=1.029 Sum_probs=9.9
Q ss_pred EEEEecCCCCC
Q 001127 264 LLIVAGPGSGK 274 (1148)
Q Consensus 264 ~lI~G~AGSGK 274 (1148)
++|.|+|||||
T Consensus 5 I~i~G~~GsGK 15 (181)
T 1ly1_A 5 ILTIGCPGSGK 15 (181)
T ss_dssp EEEECCTTSSH
T ss_pred EEEecCCCCCH
Confidence 57789999999
No 133
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=31.97 E-value=13 Score=36.37 Aligned_cols=11 Identities=9% Similarity=0.027 Sum_probs=10.0
Q ss_pred EEEEecCCCCC
Q 001127 264 LLIVAGPGSGK 274 (1148)
Q Consensus 264 ~lI~G~AGSGK 274 (1148)
++|.|++||||
T Consensus 4 i~l~G~~GsGK 14 (173)
T 3kb2_A 4 IILEGPDCCFK 14 (173)
T ss_dssp EEEECSSSSSH
T ss_pred EEEECCCCCCH
Confidence 67889999999
No 134
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=31.93 E-value=15 Score=39.86 Aligned_cols=15 Identities=27% Similarity=0.574 Sum_probs=13.2
Q ss_pred CCCCEEEEecCCCCC
Q 001127 260 MSTPLLIVAGPGSGK 274 (1148)
Q Consensus 260 ~~~~~lI~G~AGSGK 274 (1148)
...++++.|+|||||
T Consensus 49 ~~~~vll~G~~GtGK 63 (310)
T 1ofh_A 49 TPKNILMIGPTGVGK 63 (310)
T ss_dssp CCCCEEEECCTTSSH
T ss_pred CCceEEEECCCCCCH
Confidence 456899999999999
No 135
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=31.15 E-value=14 Score=39.92 Aligned_cols=14 Identities=43% Similarity=0.816 Sum_probs=12.5
Q ss_pred CCCEEEEecCCCCC
Q 001127 261 STPLLIVAGPGSGK 274 (1148)
Q Consensus 261 ~~~~lI~G~AGSGK 274 (1148)
...++|.|+|||||
T Consensus 54 ~~~vll~Gp~GtGK 67 (297)
T 3b9p_A 54 AKGLLLFGPPGNGK 67 (297)
T ss_dssp CSEEEEESSSSSCH
T ss_pred CCeEEEECcCCCCH
Confidence 56789999999999
No 136
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=31.03 E-value=34 Score=43.98 Aligned_cols=55 Identities=18% Similarity=0.141 Sum_probs=39.8
Q ss_pred cCCHHHHHHhc---cCCCCCEEEEecCCCCC-------------CCCCCCEEEEeccHHHHHHHHHHHHhhh
Q 001127 247 SLNDQQLEAAC---GDMSTPLLIVAGPGSGK-------------GISPSNILAMTFTTAAASEMRDRIGSIV 302 (1148)
Q Consensus 247 ~Ln~~Qr~aV~---~~~~~~~lI~G~AGSGK-------------~~~~~~ILvltft~~Aa~ei~~RL~~~l 302 (1148)
.|.+.|++++. ....+..+|.++.|+|| ....+++||++++ ....+....+.+.+
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f 223 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRF 223 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHS
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHh
Confidence 47889999883 22344566778999999 2345689999999 77777777776544
No 137
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=30.94 E-value=20 Score=38.59 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=16.1
Q ss_pred HHHHHHhccCCCCCEEEEecCCCCC
Q 001127 250 DQQLEAACGDMSTPLLIVAGPGSGK 274 (1148)
Q Consensus 250 ~~Qr~aV~~~~~~~~lI~G~AGSGK 274 (1148)
+...+.+.......++++|+|||||
T Consensus 33 ~~~l~~~~l~~~~GvlL~Gp~GtGK 57 (274)
T 2x8a_A 33 PDQFKALGLVTPAGVLLAGPPGCGK 57 (274)
T ss_dssp HHHHHHTTCCCCSEEEEESSTTSCH
T ss_pred HHHHHHcCCCCCCeEEEECCCCCcH
Confidence 3333434333333499999999999
No 138
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=30.65 E-value=21 Score=40.10 Aligned_cols=15 Identities=33% Similarity=0.612 Sum_probs=13.1
Q ss_pred CCCCEEEEecCCCCC
Q 001127 260 MSTPLLIVAGPGSGK 274 (1148)
Q Consensus 260 ~~~~~lI~G~AGSGK 274 (1148)
...++++.|+|||||
T Consensus 50 ~~~~vll~GppGtGK 64 (363)
T 3hws_A 50 GKSNILLIGPTGSGK 64 (363)
T ss_dssp CCCCEEEECCTTSSH
T ss_pred CCCeEEEECCCCCCH
Confidence 356799999999999
No 139
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=30.49 E-value=16 Score=38.71 Aligned_cols=15 Identities=40% Similarity=0.833 Sum_probs=12.7
Q ss_pred CCCCEEEEecCCCCC
Q 001127 260 MSTPLLIVAGPGSGK 274 (1148)
Q Consensus 260 ~~~~~lI~G~AGSGK 274 (1148)
...+++|+|+|||||
T Consensus 44 ~~~~vll~G~~GtGK 58 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGK 58 (257)
T ss_dssp CCCEEEEECCTTSCH
T ss_pred CCCeEEEECcCCCCH
Confidence 345689999999999
No 140
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=30.15 E-value=21 Score=36.49 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=19.9
Q ss_pred cCCHHHHHHhccCCCCCEEEEecCCCCC
Q 001127 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK 274 (1148)
Q Consensus 247 ~Ln~~Qr~aV~~~~~~~~lI~G~AGSGK 274 (1148)
.....++.......+..+.|.|++||||
T Consensus 11 ~~~~~~r~~~~~~~~~~i~~~G~~GsGK 38 (211)
T 1m7g_A 11 ALTRSERTELRNQRGLTIWLTGLSASGK 38 (211)
T ss_dssp CCCHHHHHHHHTSSCEEEEEECSTTSSH
T ss_pred ccCHHHhhcccCCCCCEEEEECCCCCCH
Confidence 4567788776444344467789999999
No 141
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=30.06 E-value=15 Score=40.81 Aligned_cols=25 Identities=20% Similarity=0.086 Sum_probs=18.0
Q ss_pred cCEEEEecCccCCHHHHHHHHHHHc
Q 001127 476 WKAIIVDEFQDTSAMQYSLLQILAS 500 (1148)
Q Consensus 476 fd~IiIDEfQDftp~q~~lL~~L~~ 500 (1148)
...|+|||++.+++.....|..+..
T Consensus 145 ~~vl~iDEi~~l~~~~~~~Ll~~le 169 (350)
T 1g8p_A 145 RGYLYIDECNLLEDHIVDLLLDVAQ 169 (350)
T ss_dssp TEEEEETTGGGSCHHHHHHHHHHHH
T ss_pred CCEEEEeChhhCCHHHHHHHHHHHh
Confidence 4589999999999876555444443
No 142
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=29.88 E-value=15 Score=40.06 Aligned_cols=13 Identities=46% Similarity=0.562 Sum_probs=10.9
Q ss_pred CEEEEecCCCCCC
Q 001127 263 PLLIVAGPGSGKG 275 (1148)
Q Consensus 263 ~~lI~G~AGSGK~ 275 (1148)
.+++.|+|||||+
T Consensus 38 ~lLl~GppGtGKT 50 (293)
T 3t15_A 38 ILGIWGGKGQGKS 50 (293)
T ss_dssp EEEEEECTTSCHH
T ss_pred EEEEECCCCCCHH
Confidence 3778899999993
No 143
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=29.37 E-value=14 Score=39.41 Aligned_cols=16 Identities=38% Similarity=0.798 Sum_probs=13.1
Q ss_pred CCCCCEEEEecCCCCC
Q 001127 259 DMSTPLLIVAGPGSGK 274 (1148)
Q Consensus 259 ~~~~~~lI~G~AGSGK 274 (1148)
....+++|.|+|||||
T Consensus 42 ~~~~~vll~G~~GtGK 57 (268)
T 2r62_A 42 KIPKGVLLVGPPGTGK 57 (268)
T ss_dssp CCCSCCCCBCSSCSSH
T ss_pred CCCceEEEECCCCCcH
Confidence 3455689999999999
No 144
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=29.25 E-value=23 Score=38.57 Aligned_cols=16 Identities=38% Similarity=0.563 Sum_probs=13.3
Q ss_pred CCCCCEEEEecCCCCC
Q 001127 259 DMSTPLLIVAGPGSGK 274 (1148)
Q Consensus 259 ~~~~~~lI~G~AGSGK 274 (1148)
.....++|.|+|||||
T Consensus 47 ~~~~~vLL~Gp~GtGK 62 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGK 62 (301)
T ss_dssp CCCSEEEEECSSSSSH
T ss_pred CCCceEEEECCCCcCH
Confidence 3455689999999999
No 145
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=29.20 E-value=34 Score=40.00 Aligned_cols=56 Identities=11% Similarity=0.132 Sum_probs=39.6
Q ss_pred hcCCHHHHHHhcc-----CCCCCEEEEecCCCCC-------------CCCCCCEEEEeccHHHHHHHHHHHHhhh
Q 001127 246 QSLNDQQLEAACG-----DMSTPLLIVAGPGSGK-------------GISPSNILAMTFTTAAASEMRDRIGSIV 302 (1148)
Q Consensus 246 ~~Ln~~Qr~aV~~-----~~~~~~lI~G~AGSGK-------------~~~~~~ILvltft~~Aa~ei~~RL~~~l 302 (1148)
..|.+.|++++.. ..+...++..+.|+|| .....++||++++. ...+..+.+.+..
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~-l~~qw~~e~~~~~ 109 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLS-VLKNWEEELSKFA 109 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECST-THHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHH-HHHHHHHHHHHHC
Confidence 4578999998732 2345667778999999 23457899999854 6677777776653
No 146
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=29.10 E-value=16 Score=40.12 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=23.5
Q ss_pred cCEEEEecCccCC---HHHHHHHHHH---Hc-CCcEEEEcCC
Q 001127 476 WKAIIVDEFQDTS---AMQYSLLQIL---AS-HNRITIVGDD 510 (1148)
Q Consensus 476 fd~IiIDEfQDft---p~q~~lL~~L---~~-~~~l~lvGD~ 510 (1148)
.+.++|||+|.++ ..|..++..+ .. +..++++++.
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 5699999999988 4565555543 23 3467777763
No 147
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=28.98 E-value=23 Score=41.49 Aligned_cols=16 Identities=25% Similarity=0.561 Sum_probs=13.7
Q ss_pred CCCCCEEEEecCCCCC
Q 001127 259 DMSTPLLIVAGPGSGK 274 (1148)
Q Consensus 259 ~~~~~~lI~G~AGSGK 274 (1148)
...++++++|+|||||
T Consensus 199 ~~~~~~LL~G~pG~GK 214 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGK 214 (468)
T ss_dssp SSSCEEEEESCTTTTT
T ss_pred cCCCCeEEECCCCCCH
Confidence 4566789999999999
No 148
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=28.25 E-value=25 Score=38.54 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=14.1
Q ss_pred CCCCCEEEEecCCCCC
Q 001127 259 DMSTPLLIVAGPGSGK 274 (1148)
Q Consensus 259 ~~~~~~lI~G~AGSGK 274 (1148)
....+++|.|+|||||
T Consensus 23 ~~~~~vLi~Ge~GtGK 38 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGK 38 (304)
T ss_dssp STTSCEEEESCTTSCH
T ss_pred CCCCcEEEECCCCchH
Confidence 4567899999999999
No 149
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=27.94 E-value=16 Score=37.32 Aligned_cols=12 Identities=42% Similarity=1.021 Sum_probs=10.5
Q ss_pred EEEEecCCCCCC
Q 001127 264 LLIVAGPGSGKG 275 (1148)
Q Consensus 264 ~lI~G~AGSGK~ 275 (1148)
++|.|+|||||+
T Consensus 3 I~l~G~~GsGKs 14 (216)
T 3fb4_A 3 IVLMGLPGAGKG 14 (216)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 678899999993
No 150
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=27.84 E-value=16 Score=43.14 Aligned_cols=25 Identities=12% Similarity=0.119 Sum_probs=17.7
Q ss_pred cCEEEEecCccCCHHHHHHHHHHHc
Q 001127 476 WKAIIVDEFQDTSAMQYSLLQILAS 500 (1148)
Q Consensus 476 fd~IiIDEfQDftp~q~~lL~~L~~ 500 (1148)
.+.++|||+..+++.....|..++.
T Consensus 110 ~~IL~IDEI~r~~~~~q~~LL~~le 134 (500)
T 3nbx_X 110 AEIVFLDEIWKAGPAILNTLLTAIN 134 (500)
T ss_dssp CSEEEEESGGGCCHHHHHHHHHHHH
T ss_pred ceeeeHHhHhhhcHHHHHHHHHHHH
Confidence 4589999999998775554444443
No 151
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=27.84 E-value=19 Score=35.20 Aligned_cols=13 Identities=31% Similarity=0.613 Sum_probs=11.4
Q ss_pred CCEEEEecCCCCC
Q 001127 262 TPLLIVAGPGSGK 274 (1148)
Q Consensus 262 ~~~lI~G~AGSGK 274 (1148)
..+.|.|++||||
T Consensus 5 ~~i~l~G~~GsGK 17 (173)
T 1kag_A 5 RNIFLVGPMGAGK 17 (173)
T ss_dssp CCEEEECCTTSCH
T ss_pred CeEEEECCCCCCH
Confidence 4578999999999
No 152
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=27.74 E-value=17 Score=37.32 Aligned_cols=12 Identities=50% Similarity=1.055 Sum_probs=10.5
Q ss_pred EEEEecCCCCCC
Q 001127 264 LLIVAGPGSGKG 275 (1148)
Q Consensus 264 ~lI~G~AGSGK~ 275 (1148)
++|.|+|||||+
T Consensus 3 I~l~G~~GsGKs 14 (216)
T 3dl0_A 3 LVLMGLPGAGKG 14 (216)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 678899999993
No 153
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=27.50 E-value=17 Score=40.06 Aligned_cols=14 Identities=36% Similarity=0.816 Sum_probs=12.1
Q ss_pred CCCEEEEecCCCCC
Q 001127 261 STPLLIVAGPGSGK 274 (1148)
Q Consensus 261 ~~~~lI~G~AGSGK 274 (1148)
...+++.|+|||||
T Consensus 51 ~~~vLl~GppGtGK 64 (322)
T 3eie_A 51 TSGILLYGPPGTGK 64 (322)
T ss_dssp CCEEEEECSSSSCH
T ss_pred CCeEEEECCCCCcH
Confidence 34589999999999
No 154
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=27.46 E-value=17 Score=37.28 Aligned_cols=39 Identities=26% Similarity=0.190 Sum_probs=24.0
Q ss_pred CcCEEEEecCccCCH---H---HHHHHHHHHcC----CcEEEEcCCCCc
Q 001127 475 SWKAIIVDEFQDTSA---M---QYSLLQILASH----NRITIVGDDDQS 513 (1148)
Q Consensus 475 ~fd~IiIDEfQDftp---~---q~~lL~~L~~~----~~l~lvGD~~Qs 513 (1148)
+...|+|||+|.+-+ . ..++|..|..+ -.++++|-+...
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~ 135 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKL 135 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGG
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHH
Confidence 355999999999821 1 12455555432 268888876443
No 155
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.18 E-value=23 Score=41.29 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=18.2
Q ss_pred CHHHHHHhccCCCCCEEEEecCCCCCC
Q 001127 249 NDQQLEAACGDMSTPLLIVAGPGSGKG 275 (1148)
Q Consensus 249 n~~Qr~aV~~~~~~~~lI~G~AGSGK~ 275 (1148)
+++...........-++++|||||||+
T Consensus 231 ~pe~f~~~Gi~pprGILLyGPPGTGKT 257 (467)
T 4b4t_H 231 SPERFATLGIDPPKGILLYGPPGTGKT 257 (467)
T ss_dssp CHHHHHHHTCCCCSEEEECSCTTSSHH
T ss_pred CHHHHHHCCCCCCCceEeeCCCCCcHH
Confidence 555555443334455899999999993
No 156
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=26.93 E-value=18 Score=40.40 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=19.8
Q ss_pred cCEEEEecCccCCHHHHHHHHHHHc
Q 001127 476 WKAIIVDEFQDTSAMQYSLLQILAS 500 (1148)
Q Consensus 476 fd~IiIDEfQDftp~q~~lL~~L~~ 500 (1148)
...|+|||++.+++.....|..+..
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le 214 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALE 214 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTT
T ss_pred CceEEEhhccccChHHHHHHHHHhh
Confidence 4599999999999887776666554
No 157
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=26.91 E-value=13 Score=41.01 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=20.0
Q ss_pred CEEEEecCccCCHHHHHHHHHHHcCCcE
Q 001127 477 KAIIVDEFQDTSAMQYSLLQILASHNRI 504 (1148)
Q Consensus 477 d~IiIDEfQDftp~q~~lL~~L~~~~~l 504 (1148)
..++|||++.+++.....|..++....+
T Consensus 111 ~vl~iDEi~~~~~~~~~~Ll~~l~~~~~ 138 (331)
T 2r44_A 111 NFILADEVNRSPAKVQSALLECMQEKQV 138 (331)
T ss_dssp SEEEEETGGGSCHHHHHHHHHHHHHSEE
T ss_pred cEEEEEccccCCHHHHHHHHHHHhcCce
Confidence 4899999999998766665555543333
No 158
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=26.86 E-value=20 Score=35.45 Aligned_cols=13 Identities=38% Similarity=0.800 Sum_probs=11.5
Q ss_pred CCEEEEecCCCCC
Q 001127 262 TPLLIVAGPGSGK 274 (1148)
Q Consensus 262 ~~~lI~G~AGSGK 274 (1148)
..++|.|++||||
T Consensus 12 ~~i~i~G~~GsGK 24 (180)
T 3iij_A 12 PNILLTGTPGVGK 24 (180)
T ss_dssp CCEEEECSTTSSH
T ss_pred CeEEEEeCCCCCH
Confidence 4588999999999
No 159
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=26.82 E-value=20 Score=35.53 Aligned_cols=12 Identities=50% Similarity=0.791 Sum_probs=10.8
Q ss_pred CEEEEecCCCCC
Q 001127 263 PLLIVAGPGSGK 274 (1148)
Q Consensus 263 ~~lI~G~AGSGK 274 (1148)
.+.|.|+|||||
T Consensus 4 ~I~l~G~~GsGK 15 (184)
T 2iyv_A 4 KAVLVGLPGSGK 15 (184)
T ss_dssp SEEEECSTTSSH
T ss_pred eEEEECCCCCCH
Confidence 478899999999
No 160
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=26.55 E-value=19 Score=35.78 Aligned_cols=11 Identities=36% Similarity=0.622 Sum_probs=10.0
Q ss_pred EEEEecCCCCC
Q 001127 264 LLIVAGPGSGK 274 (1148)
Q Consensus 264 ~lI~G~AGSGK 274 (1148)
++|.|+|||||
T Consensus 4 I~i~G~~GsGK 14 (194)
T 1nks_A 4 GIVTGIPGVGK 14 (194)
T ss_dssp EEEEECTTSCH
T ss_pred EEEECCCCCCH
Confidence 67889999999
No 161
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=26.54 E-value=17 Score=38.86 Aligned_cols=14 Identities=36% Similarity=0.527 Sum_probs=12.2
Q ss_pred CCCEEEEecCCCCC
Q 001127 261 STPLLIVAGPGSGK 274 (1148)
Q Consensus 261 ~~~~lI~G~AGSGK 274 (1148)
..+++|.|+|||||
T Consensus 64 ~~~vLl~G~~GtGK 77 (272)
T 1d2n_A 64 LVSVLLEGPPHSGK 77 (272)
T ss_dssp EEEEEEECSTTSSH
T ss_pred CeEEEEECCCCCcH
Confidence 45689999999999
No 162
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=26.38 E-value=18 Score=40.00 Aligned_cols=13 Identities=38% Similarity=0.828 Sum_probs=11.8
Q ss_pred CCEEEEecCCCCC
Q 001127 262 TPLLIVAGPGSGK 274 (1148)
Q Consensus 262 ~~~lI~G~AGSGK 274 (1148)
..+++.|+|||||
T Consensus 46 ~~iLL~GppGtGK 58 (322)
T 1xwi_A 46 RGILLFGPPGTGK 58 (322)
T ss_dssp SEEEEESSSSSCH
T ss_pred ceEEEECCCCccH
Confidence 4689999999999
No 163
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=26.25 E-value=19 Score=35.77 Aligned_cols=13 Identities=38% Similarity=0.981 Sum_probs=10.7
Q ss_pred CEEEEecCCCCCC
Q 001127 263 PLLIVAGPGSGKG 275 (1148)
Q Consensus 263 ~~lI~G~AGSGK~ 275 (1148)
.+.|.|+|||||+
T Consensus 6 ~I~l~G~~GsGKS 18 (186)
T 3cm0_A 6 AVIFLGPPGAGKG 18 (186)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEECCCCCCHH
Confidence 3678899999993
No 164
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=26.22 E-value=19 Score=35.51 Aligned_cols=12 Identities=25% Similarity=0.628 Sum_probs=10.4
Q ss_pred CEEEEecCCCCC
Q 001127 263 PLLIVAGPGSGK 274 (1148)
Q Consensus 263 ~~lI~G~AGSGK 274 (1148)
.++|.|+|||||
T Consensus 5 ~i~l~G~~GsGK 16 (178)
T 1qhx_A 5 MIILNGGSSAGK 16 (178)
T ss_dssp EEEEECCTTSSH
T ss_pred EEEEECCCCCCH
Confidence 367789999999
No 165
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.99 E-value=24 Score=40.73 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=17.1
Q ss_pred CHHHHHHhccCCCCCEEEEecCCCCCC
Q 001127 249 NDQQLEAACGDMSTPLLIVAGPGSGKG 275 (1148)
Q Consensus 249 n~~Qr~aV~~~~~~~~lI~G~AGSGK~ 275 (1148)
+++..+........-++++|||||||+
T Consensus 204 ~pe~f~~~Gi~~prGvLLyGPPGTGKT 230 (437)
T 4b4t_I 204 HPELYEEMGIKPPKGVILYGAPGTGKT 230 (437)
T ss_dssp CCHHHHHHTCCCCSEEEEESSTTTTHH
T ss_pred CHHHHHhCCCCCCCCCceECCCCchHH
Confidence 344433332233455899999999993
No 166
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=25.67 E-value=23 Score=39.10 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=21.7
Q ss_pred CcCEEEEecCccCCHHHHHHHHHHHcCCcEEEEcC
Q 001127 475 SWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGD 509 (1148)
Q Consensus 475 ~fd~IiIDEfQDftp~q~~lL~~L~~~~~l~lvGD 509 (1148)
....|+|||++.+++.....|........+.++|.
T Consensus 106 ~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~ 140 (338)
T 3pfi_A 106 EGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIG 140 (338)
T ss_dssp TTCEEEEETGGGCCHHHHHHHHHHHHTSCC-----
T ss_pred CCCEEEEechhhcCHHHHHHHHHHHHhccchhhcc
Confidence 34599999999999876666655555444444443
No 167
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=25.43 E-value=20 Score=36.63 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=18.4
Q ss_pred CcCEEEEecCccCCHHHHHHHHHHH
Q 001127 475 SWKAIIVDEFQDTSAMQYSLLQILA 499 (1148)
Q Consensus 475 ~fd~IiIDEfQDftp~q~~lL~~L~ 499 (1148)
....|+|||++.+++.....|..+.
T Consensus 126 ~~~vlviDe~~~l~~~~~~~l~~~l 150 (250)
T 1njg_A 126 RFKVYLIDEVHMLSRHSFNALLKTL 150 (250)
T ss_dssp SSEEEEEETGGGSCHHHHHHHHHHH
T ss_pred CceEEEEECcccccHHHHHHHHHHH
Confidence 4568999999999987665554444
No 168
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=25.40 E-value=20 Score=35.51 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=11.1
Q ss_pred CCEEEEecCCCCC
Q 001127 262 TPLLIVAGPGSGK 274 (1148)
Q Consensus 262 ~~~lI~G~AGSGK 274 (1148)
..++|.|++||||
T Consensus 6 ~~i~l~G~~GsGK 18 (185)
T 3trf_A 6 TNIYLIGLMGAGK 18 (185)
T ss_dssp CEEEEECSTTSSH
T ss_pred CEEEEECCCCCCH
Confidence 3578889999999
No 169
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=25.39 E-value=24 Score=35.82 Aligned_cols=14 Identities=36% Similarity=0.703 Sum_probs=11.6
Q ss_pred CCCEEEEecCCCCC
Q 001127 261 STPLLIVAGPGSGK 274 (1148)
Q Consensus 261 ~~~~lI~G~AGSGK 274 (1148)
+..++|.|++||||
T Consensus 12 ~~~i~l~G~sGsGK 25 (204)
T 2qor_A 12 IPPLVVCGPSGVGK 25 (204)
T ss_dssp CCCEEEECCTTSCH
T ss_pred CCEEEEECCCCCCH
Confidence 44578889999999
No 170
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=25.36 E-value=20 Score=35.59 Aligned_cols=13 Identities=23% Similarity=0.537 Sum_probs=10.8
Q ss_pred CEEEEecCCCCCC
Q 001127 263 PLLIVAGPGSGKG 275 (1148)
Q Consensus 263 ~~lI~G~AGSGK~ 275 (1148)
.++|.|+|||||+
T Consensus 5 ~I~i~G~~GsGKs 17 (192)
T 1kht_A 5 VVVVTGVPGVGST 17 (192)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEECCCCCCHH
Confidence 4678899999993
No 171
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=25.33 E-value=21 Score=35.17 Aligned_cols=13 Identities=31% Similarity=0.276 Sum_probs=6.7
Q ss_pred CEEEEecCCCCCC
Q 001127 263 PLLIVAGPGSGKG 275 (1148)
Q Consensus 263 ~~lI~G~AGSGK~ 275 (1148)
.++|.|+|||||.
T Consensus 7 ~I~l~G~~GsGKS 19 (183)
T 2vli_A 7 IIWINGPFGVGKT 19 (183)
T ss_dssp EEEEECCC----C
T ss_pred EEEEECCCCCCHH
Confidence 3677899999993
No 172
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=25.31 E-value=26 Score=38.64 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=22.6
Q ss_pred CcCEEEEecCccCCHHHHH-HHHHHHcC---CcEEEEcC
Q 001127 475 SWKAIIVDEFQDTSAMQYS-LLQILASH---NRITIVGD 509 (1148)
Q Consensus 475 ~fd~IiIDEfQDftp~q~~-lL~~L~~~---~~l~lvGD 509 (1148)
.+..|+|||++.+++.... ++..+-.. ..++++++
T Consensus 133 ~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 133 PYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEES
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 5679999999999985444 44444332 24555554
No 173
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=25.30 E-value=19 Score=35.12 Aligned_cols=13 Identities=38% Similarity=0.567 Sum_probs=11.3
Q ss_pred CCEEEEecCCCCC
Q 001127 262 TPLLIVAGPGSGK 274 (1148)
Q Consensus 262 ~~~lI~G~AGSGK 274 (1148)
.++.|.|++||||
T Consensus 8 ~~i~l~G~~GsGK 20 (168)
T 1zuh_A 8 QHLVLIGFMGSGK 20 (168)
T ss_dssp CEEEEESCTTSSH
T ss_pred ceEEEECCCCCCH
Confidence 3578899999999
No 174
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=25.19 E-value=21 Score=35.18 Aligned_cols=12 Identities=33% Similarity=0.537 Sum_probs=10.9
Q ss_pred CEEEEecCCCCC
Q 001127 263 PLLIVAGPGSGK 274 (1148)
Q Consensus 263 ~~lI~G~AGSGK 274 (1148)
.+.|.|+|||||
T Consensus 6 ~i~i~G~~GsGK 17 (175)
T 1via_A 6 NIVFIGFMGSGK 17 (175)
T ss_dssp CEEEECCTTSCH
T ss_pred EEEEEcCCCCCH
Confidence 478899999999
No 175
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=25.12 E-value=21 Score=35.60 Aligned_cols=13 Identities=54% Similarity=0.846 Sum_probs=11.0
Q ss_pred CCEEEEecCCCCC
Q 001127 262 TPLLIVAGPGSGK 274 (1148)
Q Consensus 262 ~~~lI~G~AGSGK 274 (1148)
..+.|+|++||||
T Consensus 10 ~~i~l~G~~GsGK 22 (191)
T 1zp6_A 10 NILLLSGHPGSGK 22 (191)
T ss_dssp EEEEEEECTTSCH
T ss_pred eEEEEECCCCCCH
Confidence 3477889999999
No 176
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=25.03 E-value=72 Score=40.21 Aligned_cols=96 Identities=16% Similarity=0.165 Sum_probs=65.7
Q ss_pred cCCHHHHHHhccCCCCCEEEEecCCCCC-----------CCCCCCEEEEeccHHHHHHHHHHHHhhhc---cc-------
Q 001127 247 SLNDQQLEAACGDMSTPLLIVAGPGSGK-----------GISPSNILAMTFTTAAASEMRDRIGSIVG---KA------- 305 (1148)
Q Consensus 247 ~Ln~~Qr~aV~~~~~~~~lI~G~AGSGK-----------~~~~~~ILvltft~~Aa~ei~~RL~~~l~---~~------- 305 (1148)
..++-|..++-.-..|. +..+..|||| ...+..++|+|+|+-.|.+..+-+..... -.
T Consensus 79 ~Pt~VQ~~~ip~LlqG~-IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg 157 (997)
T 2ipc_A 79 RHFDVQLIGGAVLHEGK-IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHA 157 (997)
T ss_dssp CCCHHHHHHHHHHHTTS-EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTT
T ss_pred CCcHHHHhhcccccCCc-eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 56889998874334555 6678999999 24556899999999999988877665432 10
Q ss_pred ---------cCCCceEechHHHHHHHHHHHHH----Hhc-C---CCCceecChHH
Q 001127 306 ---------TAKELTISTFHSFSLQLCRSHAE----KLE-R---TSEFLIYGHGQ 343 (1148)
Q Consensus 306 ---------~~~~v~V~Tfhs~a~rIl~~~~~----~~~-~---~~~~~i~~~~~ 343 (1148)
....+.|+|..+|.+..++..-. ... . .-.+.++++.+
T Consensus 158 ~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaD 212 (997)
T 2ipc_A 158 STPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVD 212 (997)
T ss_dssp CCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHH
T ss_pred CCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechH
Confidence 01347889999998888887521 111 1 23466777765
No 177
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=24.99 E-value=20 Score=35.64 Aligned_cols=11 Identities=45% Similarity=1.238 Sum_probs=9.9
Q ss_pred EEEEecCCCCC
Q 001127 264 LLIVAGPGSGK 274 (1148)
Q Consensus 264 ~lI~G~AGSGK 274 (1148)
++|.|+|||||
T Consensus 6 I~l~G~~GsGK 16 (196)
T 1tev_A 6 VFVLGGPGAGK 16 (196)
T ss_dssp EEEECCTTSSH
T ss_pred EEEECCCCCCH
Confidence 67789999999
No 178
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=24.98 E-value=20 Score=35.79 Aligned_cols=13 Identities=46% Similarity=0.876 Sum_probs=11.1
Q ss_pred CCEEEEecCCCCC
Q 001127 262 TPLLIVAGPGSGK 274 (1148)
Q Consensus 262 ~~~lI~G~AGSGK 274 (1148)
..++|+|++||||
T Consensus 11 ~~I~l~G~~GsGK 23 (184)
T 1y63_A 11 INILITGTPGTGK 23 (184)
T ss_dssp CEEEEECSTTSSH
T ss_pred CEEEEECCCCCCH
Confidence 3478889999999
No 179
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=24.86 E-value=21 Score=38.44 Aligned_cols=13 Identities=15% Similarity=0.386 Sum_probs=11.3
Q ss_pred CCEEEEecCCCCC
Q 001127 262 TPLLIVAGPGSGK 274 (1148)
Q Consensus 262 ~~~lI~G~AGSGK 274 (1148)
+.+++.|||||||
T Consensus 105 n~~~l~GppgtGK 117 (267)
T 1u0j_A 105 NTIWLFGPATTGK 117 (267)
T ss_dssp CEEEEECSTTSSH
T ss_pred cEEEEECCCCCCH
Confidence 3488889999999
No 180
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=24.73 E-value=21 Score=35.53 Aligned_cols=12 Identities=25% Similarity=0.725 Sum_probs=10.2
Q ss_pred EEEEecCCCCCC
Q 001127 264 LLIVAGPGSGKG 275 (1148)
Q Consensus 264 ~lI~G~AGSGK~ 275 (1148)
++|.|+|||||.
T Consensus 8 I~l~G~~GsGKS 19 (193)
T 2rhm_A 8 IIVTGHPATGKT 19 (193)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 577799999993
No 181
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=24.71 E-value=24 Score=38.50 Aligned_cols=35 Identities=17% Similarity=0.071 Sum_probs=23.6
Q ss_pred cCEEEEecCccCCHHHHHHHHHHHcCCcEEEEcCC
Q 001127 476 WKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDD 510 (1148)
Q Consensus 476 fd~IiIDEfQDftp~q~~lL~~L~~~~~l~lvGD~ 510 (1148)
...|+|||++.+++.....|..+.....+.++|+.
T Consensus 91 ~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~ 125 (324)
T 1hqc_A 91 GDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQ 125 (324)
T ss_dssp TCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSS
T ss_pred CCEEEEECCcccccchHHHHHHHHHhhhhHHhccc
Confidence 45899999999998665555444444455555543
No 182
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=24.67 E-value=25 Score=36.79 Aligned_cols=26 Identities=15% Similarity=0.032 Sum_probs=19.0
Q ss_pred CEEEEecCCCCC-----------CCCCCCEEEEeccH
Q 001127 263 PLLIVAGPGSGK-----------GISPSNILAMTFTT 288 (1148)
Q Consensus 263 ~~lI~G~AGSGK-----------~~~~~~ILvltft~ 288 (1148)
-.+|.|++|||| ...+.+++++.|..
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 356678899999 23567888887654
No 183
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=24.52 E-value=23 Score=39.73 Aligned_cols=14 Identities=36% Similarity=0.816 Sum_probs=12.3
Q ss_pred CCCEEEEecCCCCC
Q 001127 261 STPLLIVAGPGSGK 274 (1148)
Q Consensus 261 ~~~~lI~G~AGSGK 274 (1148)
...++|.|+|||||
T Consensus 84 ~~~iLL~GppGtGK 97 (355)
T 2qp9_X 84 TSGILLYGPPGTGK 97 (355)
T ss_dssp CCCEEEECSTTSCH
T ss_pred CceEEEECCCCCcH
Confidence 45699999999999
No 184
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=24.39 E-value=22 Score=35.56 Aligned_cols=13 Identities=62% Similarity=1.244 Sum_probs=10.9
Q ss_pred CEEEEecCCCCCC
Q 001127 263 PLLIVAGPGSGKG 275 (1148)
Q Consensus 263 ~~lI~G~AGSGK~ 275 (1148)
.+.|.|+|||||+
T Consensus 11 ~I~l~G~~GsGKs 23 (196)
T 2c95_A 11 IIFVVGGPGSGKG 23 (196)
T ss_dssp EEEEEECTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4678899999993
No 185
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=24.28 E-value=21 Score=37.64 Aligned_cols=13 Identities=46% Similarity=0.986 Sum_probs=10.7
Q ss_pred CEEEEecCCCCCC
Q 001127 263 PLLIVAGPGSGKG 275 (1148)
Q Consensus 263 ~~lI~G~AGSGK~ 275 (1148)
.++|.|+|||||+
T Consensus 31 ~I~l~G~~GsGKs 43 (243)
T 3tlx_A 31 RYIFLGAPGSGKG 43 (243)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 3677899999993
No 186
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=24.20 E-value=37 Score=37.33 Aligned_cols=39 Identities=21% Similarity=0.184 Sum_probs=25.4
Q ss_pred CCCEEEEecCCCCC-----------CCCCCCEEEEeccHHHHHHHHHHHHh
Q 001127 261 STPLLIVAGPGSGK-----------GISPSNILAMTFTTAAASEMRDRIGS 300 (1148)
Q Consensus 261 ~~~~lI~G~AGSGK-----------~~~~~~ILvltft~~Aa~ei~~RL~~ 300 (1148)
+.-++|.|+||+|| ...+.+++++++- -...++..|+..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS-SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC-CCHHHHHHHHHH
Confidence 44467779999999 2234677777754 445566666654
No 187
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=24.19 E-value=17 Score=39.41 Aligned_cols=25 Identities=12% Similarity=0.357 Sum_probs=18.1
Q ss_pred cCEEEEecCccCCHHHHHHHHHHHc
Q 001127 476 WKAIIVDEFQDTSAMQYSLLQILAS 500 (1148)
Q Consensus 476 fd~IiIDEfQDftp~q~~lL~~L~~ 500 (1148)
+..|+|||+..+++.....|..+..
T Consensus 120 ~~vl~lDEi~~l~~~~~~~Ll~~le 144 (311)
T 4fcw_A 120 YSVILFDAIEKAHPDVFNILLQMLD 144 (311)
T ss_dssp SEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred CeEEEEeChhhcCHHHHHHHHHHHh
Confidence 4599999999999865555444444
No 188
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=24.09 E-value=20 Score=39.99 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=16.7
Q ss_pred cCEEEEecCccCCHH--HHHHHHHHH
Q 001127 476 WKAIIVDEFQDTSAM--QYSLLQILA 499 (1148)
Q Consensus 476 fd~IiIDEfQDftp~--q~~lL~~L~ 499 (1148)
...|+|||+|.+... +..+|..|.
T Consensus 131 ~~vlilDEi~~l~~~~~~~~~l~~l~ 156 (387)
T 2v1u_A 131 IYIIVLDEIDFLPKRPGGQDLLYRIT 156 (387)
T ss_dssp EEEEEEETTTHHHHSTTHHHHHHHHH
T ss_pred eEEEEEccHhhhcccCCCChHHHhHh
Confidence 448999999999874 444554443
No 189
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=23.99 E-value=22 Score=35.24 Aligned_cols=13 Identities=54% Similarity=1.198 Sum_probs=10.7
Q ss_pred CEEEEecCCCCCC
Q 001127 263 PLLIVAGPGSGKG 275 (1148)
Q Consensus 263 ~~lI~G~AGSGK~ 275 (1148)
.+.|.|+|||||.
T Consensus 8 ~I~l~G~~GsGKs 20 (194)
T 1qf9_A 8 VVFVLGGPGSGKG 20 (194)
T ss_dssp EEEEEESTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 3677899999993
No 190
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=23.92 E-value=25 Score=36.61 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=23.6
Q ss_pred CCCEEEEecCCCCC------------CCCCCCEEEEeccHHHHHHHHHHHH
Q 001127 261 STPLLIVAGPGSGK------------GISPSNILAMTFTTAAASEMRDRIG 299 (1148)
Q Consensus 261 ~~~~lI~G~AGSGK------------~~~~~~ILvltft~~Aa~ei~~RL~ 299 (1148)
+.-++|.|+||+|| ...+..++++++... ..++.+|+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~-~~~~~~~~~ 79 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER-ARDLRREMA 79 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC-HHHHHHHHH
Confidence 34467889999999 122456777776543 344455544
No 191
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=23.88 E-value=22 Score=35.54 Aligned_cols=13 Identities=62% Similarity=1.260 Sum_probs=10.9
Q ss_pred CEEEEecCCCCCC
Q 001127 263 PLLIVAGPGSGKG 275 (1148)
Q Consensus 263 ~~lI~G~AGSGK~ 275 (1148)
.+.|.|+|||||.
T Consensus 14 ~I~l~G~~GsGKs 26 (199)
T 2bwj_A 14 IIFIIGGPGSGKG 26 (199)
T ss_dssp EEEEEECTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4678899999993
No 192
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=23.68 E-value=22 Score=34.73 Aligned_cols=12 Identities=33% Similarity=0.841 Sum_probs=10.7
Q ss_pred CEEEEecCCCCC
Q 001127 263 PLLIVAGPGSGK 274 (1148)
Q Consensus 263 ~~lI~G~AGSGK 274 (1148)
.+.|.|++||||
T Consensus 4 ~I~l~G~~GsGK 15 (173)
T 1e6c_A 4 PIFMVGARGCGM 15 (173)
T ss_dssp CEEEESCTTSSH
T ss_pred eEEEECCCCCCH
Confidence 478899999999
No 193
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=23.56 E-value=25 Score=39.56 Aligned_cols=15 Identities=33% Similarity=0.658 Sum_probs=13.3
Q ss_pred CCCCEEEEecCCCCC
Q 001127 260 MSTPLLIVAGPGSGK 274 (1148)
Q Consensus 260 ~~~~~lI~G~AGSGK 274 (1148)
...++++.|+|||||
T Consensus 71 ~~~~ill~Gp~GtGK 85 (376)
T 1um8_A 71 SKSNILLIGPTGSGK 85 (376)
T ss_dssp CCCCEEEECCTTSSH
T ss_pred CCCCEEEECCCCCCH
Confidence 456799999999999
No 194
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=23.34 E-value=34 Score=35.91 Aligned_cols=14 Identities=43% Similarity=0.781 Sum_probs=11.9
Q ss_pred CCCEEEEecCCCCC
Q 001127 261 STPLLIVAGPGSGK 274 (1148)
Q Consensus 261 ~~~~lI~G~AGSGK 274 (1148)
...++|+|+|||||
T Consensus 49 ~~g~ll~G~~G~GK 62 (254)
T 1ixz_A 49 PKGVLLVGPPGVGK 62 (254)
T ss_dssp CSEEEEECCTTSSH
T ss_pred CCeEEEECCCCCCH
Confidence 33489999999999
No 195
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=23.30 E-value=26 Score=35.31 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=17.8
Q ss_pred EEEEecCCCCC-----------CCCCCCEEEEecc
Q 001127 264 LLIVAGPGSGK-----------GISPSNILAMTFT 287 (1148)
Q Consensus 264 ~lI~G~AGSGK-----------~~~~~~ILvltft 287 (1148)
.+|.|++|||| ...+.+++++++.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~ 40 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPK 40 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 56779999999 1245678887766
No 196
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=23.29 E-value=25 Score=38.06 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=18.1
Q ss_pred CcCEEEEecCccCCHHHHHHHHHHH
Q 001127 475 SWKAIIVDEFQDTSAMQYSLLQILA 499 (1148)
Q Consensus 475 ~fd~IiIDEfQDftp~q~~lL~~L~ 499 (1148)
.+..|+|||++.+++.....|..+.
T Consensus 102 ~~~vliiDe~~~l~~~~~~~L~~~l 126 (319)
T 2chq_A 102 PFKIIFLDEADALTADAQAALRRTM 126 (319)
T ss_dssp CCEEEEEETGGGSCHHHHHTTGGGT
T ss_pred CceEEEEeCCCcCCHHHHHHHHHHH
Confidence 4679999999999986555444333
No 197
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=23.26 E-value=45 Score=40.86 Aligned_cols=42 Identities=12% Similarity=0.211 Sum_probs=35.0
Q ss_pred CEEEEecCCCCC--------CCCCCCEEEEeccHHHHHHHHHHHHhhhcc
Q 001127 263 PLLIVAGPGSGK--------GISPSNILAMTFTTAAASEMRDRIGSIVGK 304 (1148)
Q Consensus 263 ~~lI~G~AGSGK--------~~~~~~ILvltft~~Aa~ei~~RL~~~l~~ 304 (1148)
+..+.|.+|||| ...+..+||++.+...|.++...|...++.
T Consensus 34 ~~~l~g~~gs~k~~~~a~~~~~~~~~~lvv~~~~~~A~~l~~el~~~~~~ 83 (661)
T 2d7d_A 34 HQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEFFPN 83 (661)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred cEEEECcCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHHcCC
Confidence 467889999999 122457999999999999999999988653
No 198
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=23.03 E-value=24 Score=36.38 Aligned_cols=14 Identities=43% Similarity=0.795 Sum_probs=11.5
Q ss_pred CCEEEEecCCCCCC
Q 001127 262 TPLLIVAGPGSGKG 275 (1148)
Q Consensus 262 ~~~lI~G~AGSGK~ 275 (1148)
..++|.|+|||||+
T Consensus 6 ~~I~l~G~~GsGKs 19 (222)
T 1zak_A 6 LKVMISGAPASGKG 19 (222)
T ss_dssp CCEEEEESTTSSHH
T ss_pred eEEEEECCCCCCHH
Confidence 34788899999993
No 199
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=23.02 E-value=28 Score=37.75 Aligned_cols=11 Identities=55% Similarity=0.945 Sum_probs=9.6
Q ss_pred EEEEecCCCCC
Q 001127 264 LLIVAGPGSGK 274 (1148)
Q Consensus 264 ~lI~G~AGSGK 274 (1148)
++|.|+|||||
T Consensus 36 ivl~G~sGsGK 46 (287)
T 1gvn_B 36 FLLGGQPGSGK 46 (287)
T ss_dssp EEEECCTTSCT
T ss_pred EEEECCCCCCH
Confidence 56679999999
No 200
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=23.00 E-value=23 Score=35.77 Aligned_cols=13 Identities=46% Similarity=1.027 Sum_probs=10.8
Q ss_pred CEEEEecCCCCCC
Q 001127 263 PLLIVAGPGSGKG 275 (1148)
Q Consensus 263 ~~lI~G~AGSGK~ 275 (1148)
.++|.|+|||||.
T Consensus 22 ~I~l~G~~GsGKS 34 (201)
T 2cdn_A 22 RVLLLGPPGAGKG 34 (201)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 3677899999993
No 201
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=22.88 E-value=44 Score=35.76 Aligned_cols=15 Identities=33% Similarity=0.366 Sum_probs=12.4
Q ss_pred CCCCEEEEecCCCCC
Q 001127 260 MSTPLLIVAGPGSGK 274 (1148)
Q Consensus 260 ~~~~~lI~G~AGSGK 274 (1148)
.+..+.|.|++||||
T Consensus 29 ~G~i~~i~G~~GsGK 43 (279)
T 1nlf_A 29 AGTVGALVSPGGAGK 43 (279)
T ss_dssp TTSEEEEEESTTSSH
T ss_pred CCCEEEEEcCCCCCH
Confidence 345678889999999
No 202
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=22.80 E-value=23 Score=35.74 Aligned_cols=11 Identities=36% Similarity=0.444 Sum_probs=9.8
Q ss_pred EEEEecCCCCC
Q 001127 264 LLIVAGPGSGK 274 (1148)
Q Consensus 264 ~lI~G~AGSGK 274 (1148)
+.|.|+|||||
T Consensus 7 I~i~G~~GsGK 17 (213)
T 2plr_A 7 IAFEGIDGSGK 17 (213)
T ss_dssp EEEECCTTSSH
T ss_pred EEEEcCCCCCH
Confidence 57789999999
No 203
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=22.78 E-value=31 Score=38.53 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=16.1
Q ss_pred EEEEecCccCCHHH-HHH-HHHHHc
Q 001127 478 AIIVDEFQDTSAMQ-YSL-LQILAS 500 (1148)
Q Consensus 478 ~IiIDEfQDftp~q-~~l-L~~L~~ 500 (1148)
.|+|||+|.+...+ ..+ +..|..
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~ 160 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLR 160 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHT
T ss_pred EEEEECHHHhccCCCCceeHHHHhc
Confidence 89999999887642 344 555554
No 204
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=22.74 E-value=29 Score=37.72 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=18.2
Q ss_pred CcCEEEEecCccCCHHHHHHHHHHH
Q 001127 475 SWKAIIVDEFQDTSAMQYSLLQILA 499 (1148)
Q Consensus 475 ~fd~IiIDEfQDftp~q~~lL~~L~ 499 (1148)
.+..|+|||++.+++.....|..+.
T Consensus 110 ~~~vliiDe~~~l~~~~~~~L~~~l 134 (327)
T 1iqp_A 110 SFKIIFLDEADALTQDAQQALRRTM 134 (327)
T ss_dssp SCEEEEEETGGGSCHHHHHHHHHHH
T ss_pred CCeEEEEeCCCcCCHHHHHHHHHHH
Confidence 5669999999999976555444443
No 205
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=22.69 E-value=24 Score=36.09 Aligned_cols=12 Identities=33% Similarity=0.916 Sum_probs=10.5
Q ss_pred EEEEecCCCCCC
Q 001127 264 LLIVAGPGSGKG 275 (1148)
Q Consensus 264 ~lI~G~AGSGK~ 275 (1148)
++|.|+|||||+
T Consensus 3 I~l~G~~GsGKs 14 (214)
T 1e4v_A 3 IILLGAPVAGKG 14 (214)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 678899999994
No 206
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=22.62 E-value=24 Score=35.65 Aligned_cols=12 Identities=50% Similarity=1.345 Sum_probs=10.1
Q ss_pred EEEEecCCCCCC
Q 001127 264 LLIVAGPGSGKG 275 (1148)
Q Consensus 264 ~lI~G~AGSGK~ 275 (1148)
+.|.|++||||+
T Consensus 18 I~l~G~~GsGKs 29 (203)
T 1ukz_A 18 IFVLGGPGAGKG 29 (203)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 577799999993
No 207
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=22.60 E-value=29 Score=35.55 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=19.3
Q ss_pred CCCEEEEecCCCCC-----------CCCCCCEEEEeccH
Q 001127 261 STPLLIVAGPGSGK-----------GISPSNILAMTFTT 288 (1148)
Q Consensus 261 ~~~~lI~G~AGSGK-----------~~~~~~ILvltft~ 288 (1148)
+..+.|.|++|||| ....++++++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 44578889999999 11346777776544
No 208
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=22.54 E-value=24 Score=35.02 Aligned_cols=11 Identities=36% Similarity=0.444 Sum_probs=9.9
Q ss_pred EEEEecCCCCC
Q 001127 264 LLIVAGPGSGK 274 (1148)
Q Consensus 264 ~lI~G~AGSGK 274 (1148)
+.|.|++||||
T Consensus 3 I~l~G~~GsGK 13 (195)
T 2pbr_A 3 IAFEGIDGSGK 13 (195)
T ss_dssp EEEECSTTSCH
T ss_pred EEEECCCCCCH
Confidence 57889999999
No 209
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=22.45 E-value=30 Score=40.28 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=18.5
Q ss_pred CcCEEEEecCccCCHHHHHHHHHHHcCCcEEEEc
Q 001127 475 SWKAIIVDEFQDTSAMQYSLLQILASHNRITIVG 508 (1148)
Q Consensus 475 ~fd~IiIDEfQDftp~q~~lL~~L~~~~~l~lvG 508 (1148)
....|||||++.++..+...|........++++|
T Consensus 106 ~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI~ 139 (447)
T 3pvs_A 106 RRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIG 139 (447)
T ss_dssp CCEEEEEETTTCC------CCHHHHHTTSCEEEE
T ss_pred CCcEEEEeChhhhCHHHHHHHHHHHhcCceEEEe
Confidence 4559999999999976655444444444555554
No 210
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=22.39 E-value=25 Score=35.59 Aligned_cols=13 Identities=31% Similarity=0.675 Sum_probs=11.3
Q ss_pred CEEEEecCCCCCC
Q 001127 263 PLLIVAGPGSGKG 275 (1148)
Q Consensus 263 ~~lI~G~AGSGK~ 275 (1148)
.++|.|++||||.
T Consensus 20 ~I~l~G~~GsGKS 32 (202)
T 3t61_A 20 SIVVMGVSGSGKS 32 (202)
T ss_dssp CEEEECSTTSCHH
T ss_pred EEEEECCCCCCHH
Confidence 5788899999993
No 211
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=22.33 E-value=25 Score=36.39 Aligned_cols=13 Identities=54% Similarity=1.002 Sum_probs=10.9
Q ss_pred CEEEEecCCCCCC
Q 001127 263 PLLIVAGPGSGKG 275 (1148)
Q Consensus 263 ~~lI~G~AGSGK~ 275 (1148)
.++|.|+|||||+
T Consensus 9 ~I~l~G~~GsGKs 21 (227)
T 1zd8_A 9 RAVIMGAPGSGKG 21 (227)
T ss_dssp EEEEEECTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4678899999993
No 212
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=22.24 E-value=25 Score=34.51 Aligned_cols=12 Identities=33% Similarity=0.551 Sum_probs=10.5
Q ss_pred CEEEEecCCCCC
Q 001127 263 PLLIVAGPGSGK 274 (1148)
Q Consensus 263 ~~lI~G~AGSGK 274 (1148)
.+.|+|++||||
T Consensus 10 ~i~l~G~~GsGK 21 (175)
T 1knq_A 10 IYVLMGVSGSGK 21 (175)
T ss_dssp EEEEECSTTSCH
T ss_pred EEEEEcCCCCCH
Confidence 467889999999
No 213
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=22.18 E-value=26 Score=35.44 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=11.3
Q ss_pred CCEEEEecCCCCC
Q 001127 262 TPLLIVAGPGSGK 274 (1148)
Q Consensus 262 ~~~lI~G~AGSGK 274 (1148)
..++|+|++||||
T Consensus 26 ~~i~l~G~~GsGK 38 (199)
T 3vaa_A 26 VRIFLTGYMGAGK 38 (199)
T ss_dssp CEEEEECCTTSCH
T ss_pred CEEEEEcCCCCCH
Confidence 4578889999999
No 214
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=22.03 E-value=25 Score=36.17 Aligned_cols=13 Identities=38% Similarity=1.030 Sum_probs=10.8
Q ss_pred CEEEEecCCCCCC
Q 001127 263 PLLIVAGPGSGKG 275 (1148)
Q Consensus 263 ~~lI~G~AGSGK~ 275 (1148)
.++|.|+|||||+
T Consensus 6 ~I~l~G~~GsGKs 18 (220)
T 1aky_A 6 RMVLIGPPGAGKG 18 (220)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4677899999993
No 215
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=21.43 E-value=26 Score=33.99 Aligned_cols=12 Identities=25% Similarity=0.335 Sum_probs=10.5
Q ss_pred EEEEecCCCCCC
Q 001127 264 LLIVAGPGSGKG 275 (1148)
Q Consensus 264 ~lI~G~AGSGK~ 275 (1148)
+.|.|++||||.
T Consensus 3 I~l~G~~GsGKs 14 (168)
T 2pt5_A 3 IYLIGFMCSGKS 14 (168)
T ss_dssp EEEESCTTSCHH
T ss_pred EEEECCCCCCHH
Confidence 678899999993
No 216
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=21.31 E-value=27 Score=35.38 Aligned_cols=12 Identities=25% Similarity=0.177 Sum_probs=10.3
Q ss_pred CEEEEecCCCCC
Q 001127 263 PLLIVAGPGSGK 274 (1148)
Q Consensus 263 ~~lI~G~AGSGK 274 (1148)
.+.|.|++||||
T Consensus 12 ~I~l~G~~GsGK 23 (212)
T 2wwf_A 12 FIVFEGLDRSGK 23 (212)
T ss_dssp EEEEEESTTSSH
T ss_pred EEEEEcCCCCCH
Confidence 367789999999
No 217
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=21.11 E-value=41 Score=39.57 Aligned_cols=16 Identities=31% Similarity=0.617 Sum_probs=13.5
Q ss_pred CCCCCEEEEecCCCCC
Q 001127 259 DMSTPLLIVAGPGSGK 274 (1148)
Q Consensus 259 ~~~~~~lI~G~AGSGK 274 (1148)
....+++|.|+|||||
T Consensus 236 ~~~~~vLL~GppGtGK 251 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGK 251 (489)
T ss_dssp CCCCEEEEECSTTSSH
T ss_pred CCCCcEEEECcCCCCH
Confidence 3456699999999999
No 218
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=21.00 E-value=27 Score=34.85 Aligned_cols=11 Identities=36% Similarity=0.440 Sum_probs=9.8
Q ss_pred EEEEecCCCCC
Q 001127 264 LLIVAGPGSGK 274 (1148)
Q Consensus 264 ~lI~G~AGSGK 274 (1148)
+.|.|++||||
T Consensus 3 I~l~G~~GsGK 13 (197)
T 2z0h_A 3 ITFEGIDGSGK 13 (197)
T ss_dssp EEEECSTTSSH
T ss_pred EEEECCCCCCH
Confidence 56789999999
No 219
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=20.82 E-value=27 Score=40.62 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=17.0
Q ss_pred CEEEEecCccCCHHHHHHHHHHHc
Q 001127 477 KAIIVDEFQDTSAMQYSLLQILAS 500 (1148)
Q Consensus 477 d~IiIDEfQDftp~q~~lL~~L~~ 500 (1148)
..++|||++-+++.....|...+.
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lE 320 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALE 320 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTT
T ss_pred eEEEEechhhcCHHHHHHHHHHhh
Confidence 588999999888765555544443
No 220
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=20.70 E-value=28 Score=40.31 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=23.9
Q ss_pred CcCEEEEecCccCC---HHHHHHHHHH---Hc-CCcEEEEcCC
Q 001127 475 SWKAIIVDEFQDTS---AMQYSLLQIL---AS-HNRITIVGDD 510 (1148)
Q Consensus 475 ~fd~IiIDEfQDft---p~q~~lL~~L---~~-~~~l~lvGD~ 510 (1148)
..+.++|||+|.+. ..|..++..+ .. +..++++.+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 46699999999887 4666666554 33 3455555553
No 221
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=20.57 E-value=28 Score=36.00 Aligned_cols=12 Identities=58% Similarity=0.947 Sum_probs=10.3
Q ss_pred EEEEecCCCCCC
Q 001127 264 LLIVAGPGSGKG 275 (1148)
Q Consensus 264 ~lI~G~AGSGK~ 275 (1148)
++|.|+|||||+
T Consensus 3 I~l~G~~GsGKs 14 (223)
T 2xb4_A 3 ILIFGPNGSGKG 14 (223)
T ss_dssp EEEECCTTSCHH
T ss_pred EEEECCCCCCHH
Confidence 678899999993
No 222
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=20.38 E-value=29 Score=35.17 Aligned_cols=11 Identities=45% Similarity=0.706 Sum_probs=10.0
Q ss_pred EEEEecCCCCC
Q 001127 264 LLIVAGPGSGK 274 (1148)
Q Consensus 264 ~lI~G~AGSGK 274 (1148)
+.|.|++||||
T Consensus 5 i~l~G~~GsGK 15 (206)
T 1jjv_A 5 VGLTGGIGSGK 15 (206)
T ss_dssp EEEECSTTSCH
T ss_pred EEEECCCCCCH
Confidence 57889999999
No 223
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=20.35 E-value=43 Score=35.76 Aligned_cols=15 Identities=40% Similarity=0.784 Sum_probs=12.3
Q ss_pred CCCCEEEEecCCCCC
Q 001127 260 MSTPLLIVAGPGSGK 274 (1148)
Q Consensus 260 ~~~~~lI~G~AGSGK 274 (1148)
....++|+|++||||
T Consensus 72 ~~~gvll~Gp~GtGK 86 (278)
T 1iy2_A 72 IPKGVLLVGPPGVGK 86 (278)
T ss_dssp CCCEEEEECCTTSSH
T ss_pred CCCeEEEECCCcChH
Confidence 334489999999999
No 224
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=20.30 E-value=29 Score=34.95 Aligned_cols=13 Identities=23% Similarity=0.450 Sum_probs=10.9
Q ss_pred CCEEEEecCCCCC
Q 001127 262 TPLLIVAGPGSGK 274 (1148)
Q Consensus 262 ~~~lI~G~AGSGK 274 (1148)
..+.|.|++||||
T Consensus 7 ~~i~l~G~~GsGK 19 (207)
T 2j41_A 7 LLIVLSGPSGVGK 19 (207)
T ss_dssp CEEEEECSTTSCH
T ss_pred CEEEEECCCCCCH
Confidence 3467889999999
No 225
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=20.27 E-value=29 Score=35.10 Aligned_cols=13 Identities=31% Similarity=0.595 Sum_probs=11.0
Q ss_pred CCEEEEecCCCCC
Q 001127 262 TPLLIVAGPGSGK 274 (1148)
Q Consensus 262 ~~~lI~G~AGSGK 274 (1148)
..+.|+|++||||
T Consensus 30 ~~i~l~G~~GsGK 42 (200)
T 4eun_A 30 RHVVVMGVSGSGK 42 (200)
T ss_dssp CEEEEECCTTSCH
T ss_pred cEEEEECCCCCCH
Confidence 3477889999999
No 226
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=20.17 E-value=30 Score=38.35 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=17.8
Q ss_pred cCEEEEecCccCCHHHHHHHHHHH
Q 001127 476 WKAIIVDEFQDTSAMQYSLLQILA 499 (1148)
Q Consensus 476 fd~IiIDEfQDftp~q~~lL~~L~ 499 (1148)
.+.++|||++.+++.....|....
T Consensus 103 ~~v~~iDE~~~l~~~~~e~L~~~~ 126 (334)
T 1in4_A 103 GDVLFIDEIHRLNKAVEELLYSAI 126 (334)
T ss_dssp TCEEEEETGGGCCHHHHHHHHHHH
T ss_pred CCEEEEcchhhcCHHHHHHHHHHH
Confidence 458999999999986666654443
No 227
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=20.16 E-value=29 Score=34.18 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=10.5
Q ss_pred CEEEEecCCCCC
Q 001127 263 PLLIVAGPGSGK 274 (1148)
Q Consensus 263 ~~lI~G~AGSGK 274 (1148)
-+.|+|++||||
T Consensus 11 i~~l~G~nGsGK 22 (171)
T 4gp7_A 11 LVVLIGSSGSGK 22 (171)
T ss_dssp EEEEECCTTSCH
T ss_pred EEEEECCCCCCH
Confidence 467889999999
No 228
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=20.03 E-value=30 Score=35.56 Aligned_cols=13 Identities=54% Similarity=1.168 Sum_probs=10.8
Q ss_pred CEEEEecCCCCCC
Q 001127 263 PLLIVAGPGSGKG 275 (1148)
Q Consensus 263 ~~lI~G~AGSGK~ 275 (1148)
.++|.|+|||||+
T Consensus 7 ~I~l~G~~GsGKs 19 (217)
T 3be4_A 7 NLILIGAPGSGKG 19 (217)
T ss_dssp EEEEEECTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4678899999993
Done!