Query 001128
Match_columns 1148
No_of_seqs 696 out of 3687
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 12:28:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001128.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001128hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v0w_A Phospholipase D; hydrol 100.0 2.3E-35 7.8E-40 354.4 21.1 381 545-1040 66-476 (506)
2 3hsi_A Phosphatidylserine synt 100.0 1.7E-32 6E-37 324.6 22.4 353 512-1038 24-401 (458)
3 1djx_A PLC-D1, phosphoinositid 99.9 5.8E-26 2E-30 278.2 8.4 172 286-483 402-623 (624)
4 3qr0_A Phospholipase C-beta (P 99.9 1.5E-23 5.1E-28 261.5 9.5 166 286-484 555-771 (816)
5 3ohm_B 1-phosphatidylinositol- 99.9 6.6E-24 2.3E-28 265.9 5.3 166 286-484 630-845 (885)
6 2zkm_X 1-phosphatidylinositol- 99.9 1.8E-23 6.3E-28 261.8 5.8 165 286-483 583-798 (799)
7 1xdp_A Polyphosphate kinase; P 99.9 5E-21 1.7E-25 235.0 18.3 271 545-1040 347-633 (687)
8 2fk9_A Protein kinase C, ETA t 99.8 9.3E-21 3.2E-25 193.7 12.3 141 329-483 11-156 (157)
9 2o8r_A Polyphosphate kinase; s 99.8 2.1E-19 7.2E-24 219.3 21.8 269 545-1040 352-639 (705)
10 2ep6_A MCTP2 protein; beta san 99.8 7E-19 2.4E-23 173.6 14.9 123 343-484 9-132 (133)
11 2dmh_A Myoferlin; beta-sandwic 99.8 7.2E-19 2.5E-23 174.7 14.7 124 345-487 5-136 (140)
12 3b7y_A E3 ubiquitin-protein li 99.8 1.5E-18 5E-23 175.2 15.7 123 346-484 19-153 (153)
13 1gmi_A Protein kinase C, epsil 99.8 7.8E-19 2.7E-23 174.2 12.7 130 343-485 2-134 (136)
14 3kwu_A MUNC13-1; calcium bindi 99.8 4.1E-18 1.4E-22 171.0 17.3 120 345-483 15-146 (148)
15 1wfj_A Putative elicitor-respo 99.8 5.4E-19 1.8E-23 174.8 10.5 125 344-488 7-134 (136)
16 1rlw_A Phospholipase A2, CALB 99.7 2.5E-18 8.5E-23 167.6 10.2 117 346-483 2-124 (126)
17 3m7f_B E3 ubiquitin-protein li 99.7 1.4E-17 4.9E-22 172.5 15.4 124 346-485 7-142 (176)
18 3pyc_A E3 ubiquitin-protein li 99.7 3.7E-17 1.2E-21 161.1 14.4 119 348-482 6-131 (132)
19 2nq3_A Itchy homolog E3 ubiqui 99.7 2.6E-17 8.8E-22 170.8 12.6 127 343-487 32-164 (173)
20 2b3r_A Phosphatidylinositol-4- 99.7 4.4E-16 1.5E-20 154.4 12.7 105 344-464 17-130 (134)
21 1rsy_A Synaptotagmin I; calciu 99.6 3.8E-16 1.3E-20 157.8 11.4 105 345-464 40-150 (152)
22 2d8k_A Synaptotagmin VII; exoc 99.6 5.3E-16 1.8E-20 154.5 11.7 106 345-465 24-136 (141)
23 1a25_A CALB, protein kinase C 99.6 4.3E-16 1.5E-20 156.7 10.9 106 344-465 28-140 (149)
24 3f04_A Synaptotagmin-1; C2A, c 99.6 2.9E-16 1E-20 156.6 9.6 104 345-463 32-141 (143)
25 1rh8_A Piccolo protein; beta-s 99.6 1.6E-16 5.6E-21 158.1 7.1 109 343-466 14-140 (142)
26 2bwq_A Regulating synaptic mem 99.6 4.6E-16 1.6E-20 152.1 10.2 101 346-462 17-128 (129)
27 3fbk_A RGS3, RGP3, regulator o 99.6 4.1E-16 1.4E-20 157.8 9.8 107 344-466 24-139 (153)
28 1v27_A Regulating synaptic mem 99.6 3.6E-16 1.2E-20 155.1 9.0 106 346-467 20-136 (141)
29 3fdw_A Synaptotagmin-like prot 99.6 3.7E-16 1.3E-20 157.1 9.2 108 346-468 22-138 (148)
30 2q3x_A Regulating synaptic mem 99.6 4.5E-16 1.5E-20 160.8 10.0 106 345-465 28-140 (171)
31 2z0u_A WW domain-containing pr 99.6 2.7E-16 9.1E-21 160.3 7.8 103 346-463 42-154 (155)
32 3rdl_A Protein kinase C alpha 99.6 8.3E-16 2.8E-20 151.7 11.0 105 345-465 14-125 (137)
33 1wfm_A Synaptotagmin XIII; C2 99.6 1.3E-15 4.5E-20 151.6 12.5 102 346-465 25-133 (138)
34 4ggj_A Mitochondrial cardiolip 99.6 1.3E-15 4.3E-20 161.2 13.0 132 545-760 46-178 (196)
35 2r83_A Synaptotagmin-1; C2A-C2 99.6 1.9E-15 6.6E-20 167.3 15.0 128 345-487 17-150 (284)
36 2dmg_A KIAA1228 protein; beta- 99.6 9.8E-16 3.3E-20 152.6 10.4 106 346-467 23-138 (142)
37 2chd_A Rabphilin-3A, exophilin 99.6 1.4E-15 4.8E-20 151.5 10.1 105 345-464 27-140 (142)
38 1w15_A Synaptotagmin IV; metal 99.6 1.5E-15 5E-20 153.4 9.8 108 345-469 28-143 (153)
39 3n5a_A Synaptotagmin-7; calciu 99.6 9.2E-16 3.1E-20 151.4 7.6 107 346-469 15-129 (138)
40 1ugk_A Synaptotagmin IV, KIAA1 99.6 4E-15 1.4E-19 147.6 11.4 105 345-464 20-133 (138)
41 2cm5_A Rabphilin-3A; protein t 99.6 1.8E-15 6.1E-20 155.1 8.7 106 346-468 36-149 (166)
42 1tjx_A Similar to synaptotagmi 99.6 7.1E-15 2.4E-19 149.4 11.9 91 345-450 23-121 (159)
43 2cjt_A UNC-13 homolog A, MUNC1 99.6 8.1E-15 2.8E-19 145.2 11.7 115 347-482 5-130 (131)
44 2enp_A B/K protein; C2 type 1, 99.6 4.2E-15 1.4E-19 149.0 8.3 110 346-464 25-141 (147)
45 1byr_A Protein (endonuclease); 99.5 6.2E-14 2.1E-18 141.3 13.4 134 545-760 14-149 (155)
46 3l9b_A Otoferlin; C2-domain, b 99.5 3.7E-14 1.3E-18 141.1 11.4 116 348-486 22-142 (144)
47 1byr_A Protein (endonuclease); 99.5 6.1E-14 2.1E-18 141.4 11.6 119 840-1039 14-133 (155)
48 1dqv_A Synaptotagmin III; beta 99.5 1E-13 3.4E-18 155.2 12.5 124 346-485 19-150 (296)
49 2cjs_A UNC-13 homolog A, MUNC1 99.5 5.9E-14 2E-18 144.9 9.7 85 347-452 14-99 (167)
50 3jzy_A Intersectin 2; C2 domai 99.5 1.4E-13 4.8E-18 164.7 14.1 115 346-482 386-506 (510)
51 3bxj_A RAS GTPase-activating p 99.5 4E-15 1.4E-19 177.8 0.5 124 343-486 7-159 (483)
52 4gel_A Mitochondrial cardiolip 99.5 5.7E-14 2E-18 150.3 9.2 154 540-760 53-210 (220)
53 4ggj_A Mitochondrial cardiolip 99.4 1.6E-13 5.6E-18 145.0 10.4 118 840-1040 46-163 (196)
54 3nsj_A Perforin-1; pore formin 99.4 3.7E-13 1.3E-17 162.0 14.0 107 347-483 394-503 (540)
55 1cjy_A CPLA2, protein (cytosol 99.4 3.6E-13 1.2E-17 166.9 7.6 103 346-463 17-125 (749)
56 2r83_A Synaptotagmin-1; C2A-C2 99.3 3.8E-12 1.3E-16 140.9 13.7 101 346-463 149-257 (284)
57 1dqv_A Synaptotagmin III; beta 99.3 1.3E-12 4.3E-17 146.2 3.5 109 346-470 151-267 (296)
58 1xdp_A Polyphosphate kinase; P 99.1 1.4E-10 4.7E-15 142.9 12.0 119 843-1040 350-480 (687)
59 4gel_A Mitochondrial cardiolip 99.1 2.6E-10 8.8E-15 121.9 11.0 138 840-1040 58-195 (220)
60 3pfq_A PKC-B, PKC-beta, protei 99.1 1.4E-10 4.8E-15 144.0 10.0 106 344-465 169-281 (674)
61 1yrk_A NPKC-delta, protein kin 99.0 2E-09 7E-14 104.3 13.6 110 347-483 6-124 (126)
62 2enj_A NPKC-theta, protein kin 99.0 1.8E-09 6.2E-14 106.0 11.9 109 349-483 12-129 (138)
63 3hsi_A Phosphatidylserine synt 98.8 1.8E-08 6.1E-13 119.5 11.9 122 840-1023 37-165 (458)
64 1v0w_A Phospholipase D; hydrol 98.6 9.1E-08 3.1E-12 114.9 9.6 137 839-1038 65-208 (506)
65 2o8r_A Polyphosphate kinase; s 98.2 5.3E-06 1.8E-10 102.0 11.8 120 842-1040 354-487 (705)
66 3qph_A TRMB, A global transcri 95.0 0.01 3.5E-07 67.6 3.2 35 1002-1039 192-230 (342)
67 3qph_A TRMB, A global transcri 93.9 0.079 2.7E-06 60.4 7.4 47 545-604 119-165 (342)
68 2f5t_X Archaeal transcriptiona 93.4 0.1 3.5E-06 56.3 6.6 50 545-607 10-59 (233)
69 2c1l_A Restriction endonucleas 82.7 1.2 4.2E-05 47.7 5.2 40 997-1038 103-145 (358)
70 2wxf_A Phosphatidylinositol-4, 81.0 3.4 0.00012 52.8 9.4 71 345-433 215-294 (940)
71 2yrb_A Protein fantom; beta sa 73.6 8.2 0.00028 38.9 7.9 98 385-484 44-150 (156)
72 3hhm_A Phosphatidylinositol-4, 71.0 6.2 0.00021 51.0 7.8 89 342-447 350-452 (1091)
73 3l4c_A Dedicator of cytokinesi 64.5 11 0.00038 40.1 6.9 38 397-434 79-119 (220)
74 1e7u_A Phosphatidylinositol 3- 63.3 19 0.00065 46.2 10.0 76 342-433 213-296 (961)
75 2y3a_A Phosphatidylinositol-4, 59.0 6.4 0.00022 51.1 4.6 75 341-433 347-430 (1092)
76 2f5t_X Archaeal transcriptiona 43.1 33 0.0011 36.7 6.3 50 839-908 9-58 (233)
77 1q32_A TDP1P;, tyrosyl-DNA pho 32.8 23 0.00079 42.6 3.4 42 993-1034 426-487 (544)
No 1
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=100.00 E-value=2.3e-35 Score=354.42 Aligned_cols=381 Identities=15% Similarity=0.120 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHHhhhcC--CcEEEEEecCCCccccccccccccc
Q 001128 545 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEG--VRVLLLVWDDPTSRSILGYKMDGVM 622 (1148)
Q Consensus 545 ~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rG--VkVrILVwD~~~s~~~~g~k~~g~m 622 (1148)
++|++|+++|++||++|+|++|.+ ++++ ..+.+|.++|++||+|| |+||||+ |+.++.....
T Consensus 66 ~~~~~l~~~I~~Ak~~I~i~~y~~------~~~d--~~g~~i~~aL~~aa~rGp~V~Vril~-D~~g~~~~~~------- 129 (506)
T 1v0w_A 66 RLLAKMTENIGNATRTVDISTLAP------FPNG--AFQDAIVAGLKESAAKGNKLKVRILV-GAAPVYHMNV------- 129 (506)
T ss_dssp HHHHHHHHHHHTCSSEEEEEEESS------CCCH--HHHHHHHHHHHHHHHTTCCEEEEEEE-ECCC--CCCC-------
T ss_pred HHHHHHHHHHHHhccEEEEEEeec------cCCC--hHHHHHHHHHHHHHhCCCCcEEEEEE-eCcccccccc-------
Confidence 689999999999999999999953 1333 36789999999999999 9999997 6644321100
Q ss_pred ccccHHHHHHhhcCCc------EEEEccCcccccccccccccccccccccceEEEEcCCCCCCCccEEEEECCccCCCCC
Q 001128 623 QTHDEETRRVFKHSSV------KVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGR 696 (1148)
Q Consensus 623 ~t~~~et~~~l~~~gV------~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgR 696 (1148)
......+.|+..|+ .+... . |.. ....+.+||+|++|||++ +||+||+||++++
T Consensus 130 --~~~~~~~~L~~~g~~~~~~~~~~~~-~-------~~~--~~~~~~r~H~K~~ViD~~--------~a~~Gg~Nl~~d~ 189 (506)
T 1v0w_A 130 --IPSKYRDELTAKLGKAAENITLNVA-S-------MTT--SKTAFSWNHSKILVVDGQ--------SALTGGINSWKDD 189 (506)
T ss_dssp --HHHHHHHHHHHHHGGGGGGEEEEEE-E-------ECS--BTTTTBCBCCCEEEETTT--------EEEEESCCCCHHH
T ss_pred --CCHHHHHHHHhcccceeecCccccc-c-------ccc--cCCccccceeeEEEECCc--------EEEeeccccCccc
Confidence 01223344444333 33210 0 000 001134899999999996 9999999998766
Q ss_pred CCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCHHHHHHHHHHHHHHHhhcCCC-CccccCCchhhh
Q 001128 697 YDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASKPH-GIKKLKSGDDAL 775 (1148)
Q Consensus 697 wDt~~H~l~d~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GPaa~Dl~~~F~qrWn~~t~~~-~~~~l~~~~~~l 775 (1148)
|.+. ..+|||++++|+||+|.++...|.++|+...... .+..+. ....
T Consensus 190 y~~~-----------------------------~~~~~D~~v~i~G~~v~~l~~~F~~~W~~~~~~~~~~~~~~-~~~~- 238 (506)
T 1v0w_A 190 YLDT-----------------------------THPVSDVDLALTGPAAGSAGRYLDTLWTWTCQNKSNIASVW-FAAS- 238 (506)
T ss_dssp HTSS-----------------------------SSCCBEEEEEEESHHHHHHHHHHHHHHHHHHHTTTSTTTEE-EEES-
T ss_pred cccC-----------------------------CCCceEEEEEEECHHHHHHHHHHHHHHhhhccccCChhhhc-cccc-
Confidence 6421 1479999999999999999999999999654210 000000 0000
Q ss_pred hhhccCCCccCCCCCCCcccCCCCCceEEEEeecCCcccccCCCChhh-----hccccccc-------Ccc-cchhhHHH
Q 001128 776 LRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKE-----ATSKNLVC-------GKN-VLIDMSIH 842 (1148)
Q Consensus 776 ~~~~~~p~~~~~~~~p~~~~~~~~~~~vQvlRS~~~~s~~~~P~~P~~-----~~~~~l~~-------g~~-~~~e~sI~ 842 (1148)
...+..+.... ...|.. ....+...+++............|..... +....++. |+. ...+..|.
T Consensus 239 ~~~~~~~~~~~-~~~p~~-~~~~~~~~~~~~~~~~~~i~~~~P~~~~~~~~w~~~~~~~~~d~P~~~~~~~~~~~~~~~~ 316 (506)
T 1v0w_A 239 GNAGCMPTMHK-DTNPKA-SPATGNVPVIAVGGLGVGIKDVDPKSTFRPDLPTASDTKCVVGLHDNTNADRDYDTVNPEE 316 (506)
T ss_dssp TTCCCCTTHHH-HHSCSS-CCCCSSEEEEEEECCCSSSCSCCTTCCCCCCCCCCSSSCSSTTCCCTTTSCHHHHHHCHHH
T ss_pred cccccCchhcc-ccCccc-CcccccccceecccccceeecCCccccccccCcccccceeeccccccccCcccccccccHH
Confidence 00000000000 000000 01112233333322111111111110000 00000000 000 00135799
Q ss_pred HHHHHHHHhhccEEEEEEeEeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCcchhHH
Q 001128 843 TAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRI 922 (1148)
Q Consensus 843 ~Ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p~~~s~~~i 922 (1148)
++|+++|.+||++|||++|||.+--. . ...+...++.+|.+|. ++||+|+||+|..++...
T Consensus 317 ~~~~~~I~~A~~~I~I~tq~~~pyf~-p--------~~~~~~~i~~aL~~Aa--~rGV~VrIl~~~~~~~~~-------- 377 (506)
T 1v0w_A 317 SALRALVASAKGHIEISQQDLNATCP-P--------LPRYDIRLYDALAAKM--AAGVKVRIVVSDPANRGA-------- 377 (506)
T ss_dssp HHHHHHHHTCSSEEEEEESCSSCCTT-T--------SCSCCHHHHHHHHHHH--HTTCEEEEEECCGGGCC---------
T ss_pred HHHHHHHhCcCcEEEEEecccccccc-C--------cccchHHHHHHHHHHH--hCCCcEEEEeCCCCchHH--------
Confidence 99999999999999999966653110 0 0001235677777664 589999999998652211
Q ss_pred HHHHHHh-HhhHHH---H--HHHHHHHcCCceeecc--cccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCCc
Q 001128 923 LFWQHKT-MQMMYE---T--IYKALVEVGLEGAFSP--QDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRF 994 (1148)
Q Consensus 923 l~~~~rT-m~~~~~---s--i~~~L~~~Gv~~~~~P--~~Yl~f~~L~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 994 (1148)
+.+.... +..+.+ . .-..|.+.|+.. ..+ ..-+.++.++.... +.. ..+.
T Consensus 378 ~~~a~~~~~~~L~~~~~~l~~gv~ll~~g~~e-~~~~~~~~l~i~~~~~~~~---~~~------------------~~~~ 435 (506)
T 1v0w_A 378 VGSGGYSQIKSLSEISDTLRNRLANITGGQQA-AKTAMCSNLQLATFRSSPN---GKW------------------ADGH 435 (506)
T ss_dssp -----CCCCSCTHHHHHHHHHHHHHHHTSHHH-HHHHHHHHEEEEECCSSSS---SSC------------------TTSC
T ss_pred HHHhHHHHHHHHHHhhhhhcccchhcccccch-hccccccceeeeeccccCc---ccc------------------ccCc
Confidence 1111100 000000 0 011233333200 000 00001111110000 000 0011
Q ss_pred ceeeeeEEEEEeCeEEEEcccccccccCCCCCCcceEEEEeCcchh
Q 001128 995 MIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1040 (1148)
Q Consensus 995 ~IYVHSKlmIVDD~~viIGSANLN~RSm~G~~DsEiav~i~dp~~~ 1040 (1148)
..++|+|+|||||++++|||+|||.||| +|++++|++++++
T Consensus 436 ~~~lHaK~~vvD~~~~~vGS~N~d~rS~-----~E~~l~i~~~~~a 476 (506)
T 1v0w_A 436 PYAQHHKLVSVDSSTFYIGSKNLYPSWL-----QDFGYIVESPEAA 476 (506)
T ss_dssp CCCBCCEEEEETTTEEEEESCCSSCCCS-----BCEEEEEECHHHH
T ss_pred cccceEEEEEECCcEEEEeCCCCCCcch-----hhceeEecCHHHH
Confidence 4589999999999999999999999999 3999999998754
No 2
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=100.00 E-value=1.7e-32 Score=324.64 Aligned_cols=353 Identities=15% Similarity=0.080 Sum_probs=213.8
Q ss_pred ccCCeeEecccccCCCCCCCceeecCCCccchhHHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHH
Q 001128 512 RKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLR 591 (1148)
Q Consensus 512 r~Gn~V~ly~dg~~~~~~~p~i~l~~g~~y~~~~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~ 591 (1148)
..||+|+++.+|. ++|++++++|++||++|+|++|.| .++ ..+..|.++|+
T Consensus 24 ~~~n~v~~l~~g~--------------------~~~~~l~~~I~~A~~~I~i~~~~~-------~~d--~~g~~l~~aL~ 74 (458)
T 3hsi_A 24 LQAEQIEFLGSSA--------------------EFKTQIIELIRNAKKRIYVTALYW-------QKD--EAGQEILDEIY 74 (458)
T ss_dssp CCGGGEEECCCHH--------------------HHHHHHHHHHHTCSSEEEEEESCB-------CSS--HHHHHHHHHHH
T ss_pred ccCCeEEEEeCHH--------------------HHHHHHHHHHHhcCCEEEEEEEEE-------ecC--cHHHHHHHHHH
Confidence 3589999999986 789999999999999999999954 343 36889999999
Q ss_pred Hhhhc--CCcEEEEEecCCC-cccccccccccccccc-cHHHHHHhh--cCCcEEE--Ecc-Cccccccccccccccccc
Q 001128 592 SKSQE--GVRVLLLVWDDPT-SRSILGYKMDGVMQTH-DEETRRVFK--HSSVKVL--LCP-RIAGKRHSWAKQKEVGTI 662 (1148)
Q Consensus 592 ~kA~r--GVkVrILVwD~~~-s~~~~g~k~~g~m~t~-~~et~~~l~--~~gV~v~--l~p-~~~~~~~~~~~~~~~~~~ 662 (1148)
+||+| ||+||||+ |+.. .+...| ..... .......|. +++|+|. ++. +.. + ...+
T Consensus 75 ~aa~r~~GV~Vril~-D~~~~~r~~~g-----~~~~~~~~~~~~~L~~~g~nv~v~~~~f~~p~~-----~-----~~~~ 138 (458)
T 3hsi_A 75 RVKQENPHLDVKVLI-DWHRAQRNLLG-----AEKSATNADWYCEQRQTYQLPDDPNMFFGVPIN-----T-----REVF 138 (458)
T ss_dssp HHHHHSTTCEEEEEE-ETTGGGSCCC----------CCHHHHHHHHHHHHTCTTCCCCEEEECSS-----S-----SGGG
T ss_pred HHHhcCCCCEEEEEE-ECccccccccc-----cccccccHHHHHHHHhhCCCceEeeeecCCccc-----c-----cccc
Confidence 99999 99999997 7631 111011 00000 112223332 3337776 553 211 1 1245
Q ss_pred ccccceEEEEcCCCCCCCccEEEEECCccCCCCCCCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcC
Q 001128 663 YTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDG 742 (1148)
Q Consensus 663 ~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~H~l~d~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~G 742 (1148)
.++|+|++|||++ + ++||+||+++|+... .....|+| +.|.|
T Consensus 139 ~r~H~Ki~viD~~--------v-~~~G~Ni~d~y~~~~---------------------------~~~~~drd--~~i~g 180 (458)
T 3hsi_A 139 GVLHVKGFVFDDT--------V-LYSGASINNVYLHQF---------------------------EKYRYDRY--QKITH 180 (458)
T ss_dssp CCEECCEEEETTE--------E-EEESCCBSTTTTTCS---------------------------SCCEECCE--EEEEC
T ss_pred CcceeeEEEECCC--------E-EEEeeecCHHHhcCC---------------------------cccCcchh--hhhcC
Confidence 7899999999995 7 556699999876421 11234777 44899
Q ss_pred HHHHHHHHHHH--HHHHhhcCCCCcccc--CC---chhhhhhh-ccCCCccCCCCCCCcccCCCCCceEEEEeecCCccc
Q 001128 743 PAAYDVLTNFE--ERWRKASKPHGIKKL--KS---GDDALLRI-ERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSV 814 (1148)
Q Consensus 743 Paa~Dl~~~F~--qrWn~~t~~~~~~~l--~~---~~~~l~~~-~~~p~~~~~~~~p~~~~~~~~~~~vQvlRS~~~~s~ 814 (1148)
|.+.|....|. ..|+...-.. +... .. +....... +.++..... ..+. ...+...+++.....
T Consensus 181 ~~~~D~~~~~~~~~~~~g~~v~~-l~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~---~~~~~~~~~v~p~~~---- 251 (458)
T 3hsi_A 181 AELADSMVNFINDYLLDFSAVYP-LDVTNRPRTKEIRGNIRAYRKDLAQNGEY-SLKS---AVKLPNVLSVSPLFG---- 251 (458)
T ss_dssp HHHHHHHHHHHHHTTCCTTTCEE-SSSSCCCCGGGTHHHHHHHHHHHHHHCCC-CCSS---CBSSCSSCEEEEEEE----
T ss_pred chHHHHHHHHHHhhhhcCccchh-hHHHhcccchhhHHHHHHHHHhhhhcccc-cccc---cCCCCceEEEecCCC----
Confidence 99999999994 4565322100 0000 00 00000000 000000000 0000 000111123322100
Q ss_pred ccCCCChhhhcccccccCcccchhhHHHHHHHHHHHhhccEEEEEEeEeecCCCCcccccccCcCCccHHHHHHHHHHHH
Q 001128 815 RGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKI 894 (1148)
Q Consensus 815 ~~~P~~P~~~~~~~l~~g~~~~~e~sI~~Ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai 894 (1148)
.|. .+..|..+|+++|.+|++.|||+++||+++. .+..+|..|
T Consensus 252 ----------------~~~---~~~~i~~~~~~lI~~A~~~I~I~tpYf~p~~-----------------~~~~aL~~A- 294 (458)
T 3hsi_A 252 ----------------LGA---SGNELNQVIEDLFLQVQKKLVICTPYFNFPR-----------------TLQHKIATL- 294 (458)
T ss_dssp ----------------ESS---SSCHHHHHHHHHHHTCSSEEEEECSSSCCCH-----------------HHHHHHHHH-
T ss_pred ----------------CCC---chhHHHHHHHHHHHhcccEEEEEEeccCCCH-----------------HHHHHHHHH-
Confidence 010 1247899999999999999999999999863 466666655
Q ss_pred HcCCCcEEEEEecCCCCCCCCCcchhHHHHHHHHhH--hhHHHHH---HHHHHHcC---CceeecccccccccccCCccc
Q 001128 895 RAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTM--QMMYETI---YKALVEVG---LEGAFSPQDYLNFFCLGNREV 966 (1148)
Q Consensus 895 ~a~rgv~V~IVlP~~Peg~p~~~s~~~il~~~~rTm--~~~~~si---~~~L~~~G---v~~~~~P~~Yl~f~~L~~r~~ 966 (1148)
+++||+|+||+|...........+++++.+..+.. ....+.+ ++.|.++| ++++. |
T Consensus 295 -a~rGV~VrIi~~~~~and~y~~~~~~~~~~~~~~~lye~~~~~f~~~~~~l~~~G~i~V~i~~----~----------- 358 (458)
T 3hsi_A 295 -LENGKRVEIIVGDKVANDFYIPPEQPFKMAGALPYLYESNLRRFCEKFETQIESGQLVVRLWR----D----------- 358 (458)
T ss_dssp -HTTTCEEEEEEECGGGSTTCCCTTSCCCGGGGHHHHHHHHHHHHHHHTHHHHHHTSEEEEEEC----B-----------
T ss_pred -HHCCCeEEEEECCccccCCccCCcchhhhhcchHHHHHHhhhhhHHHHHHHHhCCCeEEEEEe----c-----------
Confidence 47999999999985311110111222222222110 0001111 34677788 44431 0
Q ss_pred ccccCCCCCCCCCCCCchhhhhcccCCcceeeeeEEEEEeCeEEEEcccccccccCCCCCCcceEEEEeCcc
Q 001128 967 IDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPE 1038 (1148)
Q Consensus 967 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~IYVHSKlmIVDD~~viIGSANLN~RSm~G~~DsEiav~i~dp~ 1038 (1148)
...++|+|+|||||++++|||+|||.||+. +|+|++++|++++
T Consensus 359 ---------------------------~~~~lHaK~~vvD~~~~~vGS~N~d~RS~~--lN~E~~~~i~~~~ 401 (458)
T 3hsi_A 359 ---------------------------GDNTYHLKGVWVDDRYILLTGNNLNPRAWR--LDAENGLLIYDPQ 401 (458)
T ss_dssp ---------------------------TTBEECCCEEEETTTEEEEECCCCSHHHHH--TCEEEEEEEECTT
T ss_pred ---------------------------CCCceeEEEEEECCeEEEecCCCCCcchhh--hCceeEEEEeCCc
Confidence 124899999999999999999999999998 9999999999986
No 3
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=99.92 E-value=5.8e-26 Score=278.18 Aligned_cols=172 Identities=27% Similarity=0.320 Sum_probs=147.9
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeee-----------------
Q 001128 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLL----------------- 345 (1148)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll----------------- 345 (1148)
..+.+|+.||.++|+ +| |+|.|+|||||+|+.+|. +||||||+ |+.++.++|.
T Consensus 402 ~~~~~~~~~n~~~l~RvY---P~g~R~~SSN~~P~~~W~----~G~QmvAlN~Qt~d~~m~ln~g~F~~ng~~GYvlKP~ 474 (624)
T 1djx_A 402 ESGNGFVRHNVSCLSRIY---PAGWRTDSSNYSPVEMWN----GGCQIVALNFQTPGPEMDVYLGCFQDNGGCGYVLKPA 474 (624)
T ss_dssp HHHHHHHHHHHHSCEEEE---CCTTCTTCCCCCSHHHHT----TTCCEEEECTTCCSHHHHHHHHHHHSGGGCSEEECCG
T ss_pred HhHHHHHHHhhhcceeec---cCCccCCCCCCCchHHhh----ccceeeeecccCCchHHhHHHHHhhcCCCCccEECCH
Confidence 446789999999999 99 999999999999998888 99999999 8887754332
Q ss_pred ---------------------ceEEEEEEEEeeCCCCCCC--CCccccccccccCCCCCCCCcEEEEEECC----EEEEe
Q 001128 346 ---------------------HGNLDIWIYSAKNLPNMDM--FHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGR 398 (1148)
Q Consensus 346 ---------------------~GtL~VtV~eAk~L~~~D~--~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~R 398 (1148)
.++|+|+|++|++|+.+|. .+. +||||+|.+.+ ...+|
T Consensus 475 ~lr~~~~~f~p~~~~~~~~~~~~~L~V~Vi~A~~L~~~d~~~~~~---------------~DPYV~V~l~g~~~d~~~~k 539 (624)
T 1djx_A 475 FLRDPNTTFNSRALTQGPWWRPERLRVRIISGQQLPKVNKNKNSI---------------VDPKVIVEIHGVGRDTGSRQ 539 (624)
T ss_dssp GGGCTTCCCCTTSCCSSTTCCCEEEEEEEEEEESCCCCSSCSSSC---------------CCEEEEEEEESSGGGCEEEE
T ss_pred HHcCCCCCcCcccccccCCccceEEEEEEEEcCCCCcccccccCC---------------CCcEEEEEEecCCCCcceee
Confidence 3479999999999998874 333 89999999965 24469
Q ss_pred eeeeeCC-CCCeeceEEEEEecCCC-ceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCc
Q 001128 399 TFVISNS-EDPVWQQHFYVPVAHSA-AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGAT 475 (1148)
Q Consensus 399 Tkvi~nt-~NPvWNE~F~f~v~~~~-~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~ 475 (1148)
|++++++ +||+|||+|.|.+..+. +.|+|+|||+|.. ++++||+++|||.+|..|. +|++|.+..|++.. .++
T Consensus 540 Tkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~~g~~~~-~~~ 615 (624)
T 1djx_A 540 TAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSKNGDQHP-SAT 615 (624)
T ss_dssp CCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEECCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECTTSCEEE-EEE
T ss_pred cccccCCCCCCccCceEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCCCcCCCC-ceE
Confidence 9999997 99999999999998765 7899999999985 6899999999999999875 69999999998753 468
Q ss_pred EEEEEEEe
Q 001128 476 LTLSIQYT 483 (1148)
Q Consensus 476 L~L~l~f~ 483 (1148)
|+|.++|.
T Consensus 616 L~v~i~~~ 623 (624)
T 1djx_A 616 LFVKISIQ 623 (624)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 88888875
No 4
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=99.88 E-value=1.5e-23 Score=261.48 Aligned_cols=166 Identities=24% Similarity=0.327 Sum_probs=140.2
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeec----------------
Q 001128 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLH---------------- 346 (1148)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~---------------- 346 (1148)
..+.+|+.||.++|+ +| |+|.|+|||||+|+.+|+ +||||||+ |+.+..++|.+
T Consensus 555 ~~~~~~v~~n~~~l~RvY---P~g~RidSSNy~P~~~W~----~G~QmVALN~QT~d~~m~LN~g~F~~nG~cGYVLKP~ 627 (816)
T 3qr0_A 555 DNPEDFVDYNKKQITRIY---PKGTRVDSSNYVPQIYWN----AGCQLVALNFQCFDIAMCVNLGVFEYNGCSGYLLKPE 627 (816)
T ss_dssp HCHHHHHHHTTTSCEEEE---CCTTCTTCCCCCTHHHHT----TTCSEECBCTTCCSHHHHHHHHHTTTTTTCSEEECCH
T ss_pred hhhHHHHHhhhcccceeC---CCccccCCCCCCchhhcc----cCceEEeecCcCCChhhhhhhhhhccCCceeeeecCh
Confidence 456789999999999 99 999999999999998888 99999999 98887554433
Q ss_pred ----------------------eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE------EEEe
Q 001128 347 ----------------------GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA------VVGR 398 (1148)
Q Consensus 347 ----------------------GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~------~~~R 398 (1148)
++|+|+|++|++|+.. . +||||+|.+.+. ...|
T Consensus 628 ~lr~~~~~f~p~~~~~~~~~~~~~L~V~Visaq~L~~~----~---------------~DPYV~V~l~g~p~d~~~~k~k 688 (816)
T 3qr0_A 628 FMRKLDKRFDPFTESTVDGVVAGTIEIKIISAQFLSDK----Q---------------ISSYVEVEMYGLPTDTVRKKFK 688 (816)
T ss_dssp HHHCTTCCCCTTCCSCCTTSCCEEEEEEEEEEECCCSS----C---------------CCEEEEEEEESSGGGCEEEEEE
T ss_pred HhcCCCcccCCCCCCCcCCccceEEEEEEEEcccCCCC----C---------------CCCeEEEEEeCCCcccccceee
Confidence 3699999999999742 2 799999999751 3359
Q ss_pred eeeeeC-CCCCeeceE-EEEE-ecCCC-ceEEEEEEEccCCCCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCC
Q 001128 399 TFVISN-SEDPVWQQH-FYVP-VAHSA-AEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGA 474 (1148)
Q Consensus 399 Tkvi~n-t~NPvWNE~-F~f~-v~~~~-~~L~~~V~D~D~~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g 474 (1148)
|+|+++ ++||+|||+ |.|. +..+. +.|+|+|+|++ ++|||+++|||++|..|. ++++|.+.+|++.. .+
T Consensus 689 Tkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D~d---ddfiG~~~ipL~~L~~Gy---R~vpL~~~~g~~~~-~a 761 (816)
T 3qr0_A 689 TKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSEEN---GKFIGHRVMPLDGIKPGY---RHVPLRNESNRPLG-LA 761 (816)
T ss_dssp CCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEETT---SCEEEEEEEESTTCCCEE---EEEEEECTTSCEEE-EE
T ss_pred eEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEecC---CCeeeEEEEEHHHcCCcc---eEEEEeCCCCCCCC-ce
Confidence 999986 699999998 9998 76554 78999999985 899999999999999885 68999999999764 35
Q ss_pred cEEEEEEEec
Q 001128 475 TLTLSIQYTP 484 (1148)
Q Consensus 475 ~L~L~l~f~p 484 (1148)
+|.+.+.+..
T Consensus 762 tLfv~i~~~~ 771 (816)
T 3qr0_A 762 SVFAHIVAKD 771 (816)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEe
Confidence 7888777654
No 5
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=99.88 E-value=6.6e-24 Score=265.85 Aligned_cols=166 Identities=24% Similarity=0.290 Sum_probs=140.7
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeece---------------
Q 001128 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG--------------- 347 (1148)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~G--------------- 347 (1148)
..+.+|+.||.++|+ +| |+|.|+|||||+|+.+|+ +||||||+ |+.++.++|.+|
T Consensus 630 ~~~~~~~~~n~~~l~RvY---P~g~RidSSNy~P~~~W~----~G~QmVALN~QT~d~~m~lN~g~F~~nG~cGYVLKP~ 702 (885)
T 3ohm_B 630 KSPMEFVEYNKQQLSRIY---PKGTRVDSSNYMPQLFWN----VGCQLVALNFQTLDVAMQLNAGVFEYNGRSGYLLKPE 702 (885)
T ss_dssp HSHHHHHHHHHHSCEEEE---CCTTCTTCCCCCTHHHHT----TTCSEECBCTTCCSHHHHHHHHHHTTGGGCSEEECCG
T ss_pred hCHHHHHHHhhccceeec---cCccccCCCCCCchhhcc----cCceeeeecCCCCCcccchhhhhhccCCceeeeecCH
Confidence 456789999999999 99 999999999999998888 99999999 998886655444
Q ss_pred -----------------------EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC-----EEEEee
Q 001128 348 -----------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-----AVVGRT 399 (1148)
Q Consensus 348 -----------------------tL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g-----~~~~RT 399 (1148)
+|+|+|++|++|+.. . +||||+|.+.+ ....||
T Consensus 703 ~lr~~~~~f~p~~~~~~~~~~~~~L~V~Visaq~L~~~----~---------------~DPYV~V~l~g~p~D~~~k~kT 763 (885)
T 3ohm_B 703 FMRRPDKSFDPFTEVIVDGIVANALRVKVISGQFLSDR----K---------------VGIYVEVDMFGLPVDTRRKYRT 763 (885)
T ss_dssp GGTCTTCCCCTTCSSCCTTCCCEEEEEEEEEEESCCSS----C---------------CCEEEEEEEESSTTTCBCCCCC
T ss_pred HHcCCCcCcCCCcCcccCcccceEEEEEEEEeccCccc----C---------------CCcEEEEEEeCCCcccccceee
Confidence 699999999999842 2 79999999965 223599
Q ss_pred eeeeC-CCCCeece-EEEEE-ecCCC-ceEEEEEEEccCCCCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCc
Q 001128 400 FVISN-SEDPVWQQ-HFYVP-VAHSA-AEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGAT 475 (1148)
Q Consensus 400 kvi~n-t~NPvWNE-~F~f~-v~~~~-~~L~~~V~D~D~~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~ 475 (1148)
+|+.+ ++||+||| +|.|. +..+. +.|+|+|||+| ++|||+++|||..|..|. ++++|.+..|++.. .++
T Consensus 764 kvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~d---ddfiG~~~lpL~~L~~Gy---R~vpL~~~~g~~l~-~at 836 (885)
T 3ohm_B 764 RTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEG---GKFVGHRILPVSAIRSGY---HYVCLRNEANQPLC-LPA 836 (885)
T ss_dssp CCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEETT---TEEEEEEEEETTTCCCEE---EEEEEECTTSCEEE-EEE
T ss_pred EEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcCC---ccEEeeEEEEHHHcCCCc---eEEEecCCCCCccC-ceE
Confidence 99986 59999999 69998 65554 78999999987 899999999999999885 67999999998753 458
Q ss_pred EEEEEEEec
Q 001128 476 LTLSIQYTP 484 (1148)
Q Consensus 476 L~L~l~f~p 484 (1148)
|.|.+.+..
T Consensus 837 Lfv~i~~~~ 845 (885)
T 3ohm_B 837 LLIYTEASD 845 (885)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEe
Confidence 888888653
No 6
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=99.87 E-value=1.8e-23 Score=261.83 Aligned_cols=165 Identities=22% Similarity=0.271 Sum_probs=139.3
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeece---------------
Q 001128 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG--------------- 347 (1148)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~G--------------- 347 (1148)
..+.+|+.||.++|+ +| |+|.|+|||||+|+.+|. +||||||+ |+.++.++|.+|
T Consensus 583 ~~~~~~~~~n~~~l~RvY---P~g~R~~SSN~~P~~~W~----~G~QmVAlN~Qt~d~~m~ln~g~F~~nG~cGYVlKP~ 655 (799)
T 2zkm_X 583 KASVQFVDYNKRQMSRIY---PKGTRMDSSNYMPQMFWN----AGCQMVALNFQTMDLPMQQNMAVFEFNGQSGYLLKHE 655 (799)
T ss_dssp HSHHHHHHHHHHSEEEEE---CCTTCTTCCCCCSHHHHH----TTCSEECBCTTCCSHHHHHHHHHTTTGGGCSEEECCG
T ss_pred HCHHHHHHHhhhcceeec---cCCCcCCCCCCCcHHHHh----ccceEeeeccccCchHHHHHHhhhhccCCCCceECCH
Confidence 456789999999999 99 999999999999997777 99999999 998886655433
Q ss_pred -----------------------EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC-----EEEEee
Q 001128 348 -----------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-----AVVGRT 399 (1148)
Q Consensus 348 -----------------------tL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g-----~~~~RT 399 (1148)
+|+|+|++|++|+. ++ +||||+|.+.+ ....||
T Consensus 656 ~lr~~~~~f~p~~~~~~~~~~~~~L~V~Visa~~L~~----~~---------------~DPYV~V~l~g~p~d~~~k~kT 716 (799)
T 2zkm_X 656 FMRRPDKQFNPFSVDRIDVVVATTLSITVISGQFLSE----RS---------------VRTYVEVELFGLPGDPKRRYRT 716 (799)
T ss_dssp GGTCTTSCCCTTSCCTTTTTTCEEEEEEEEEEESCCS----SC---------------CCEEEEEEEECCTTSCCCCEEC
T ss_pred HHhCCCccCCCcccccccceeeeeEEEEEEeccccCc----cC---------------CCcEEEEEEEecCCCcccceee
Confidence 79999999999984 22 79999999954 123599
Q ss_pred e-eeeC-CCCCeece-EEEE-EecCCC-ceEEEEEEEccCCCCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCC
Q 001128 400 F-VISN-SEDPVWQQ-HFYV-PVAHSA-AEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGA 474 (1148)
Q Consensus 400 k-vi~n-t~NPvWNE-~F~f-~v~~~~-~~L~~~V~D~D~~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g 474 (1148)
+ ++++ ++||+||| +|.| .+..+. +.|+|+|+|+| +++||+++|||++|..|. +|++|.+..|++.. .+
T Consensus 717 k~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~D~d---~d~iG~~~ipl~~L~~G~---r~v~L~~~~g~~~~-~~ 789 (799)
T 2zkm_X 717 KLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG---NKFLGHRIIPINALNSGY---HHLCLHSESNMPLT-MP 789 (799)
T ss_dssp CCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT---TEEEEEEEEEGGGBCCEE---EEEEEECTTCCEEE-EE
T ss_pred cccccCCCCCCeeecceEEEEEEccCCccEEEEEEEEeC---CCccceEeeehhhcCCCc---EEEeccCCCCCCCC-ce
Confidence 9 8865 69999999 6999 776554 78999999987 899999999999999885 68999999998764 46
Q ss_pred cEEEEEEEe
Q 001128 475 TLTLSIQYT 483 (1148)
Q Consensus 475 ~L~L~l~f~ 483 (1148)
.|.|.+++.
T Consensus 790 ~Lfv~i~~~ 798 (799)
T 2zkm_X 790 ALFIFLEMK 798 (799)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 888887764
No 7
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=99.85 E-value=5e-21 Score=235.03 Aligned_cols=271 Identities=13% Similarity=0.113 Sum_probs=181.4
Q ss_pred HHHHHHHHHHHHhcc-----ceEEEEeeccceeeEEeCCCCchHHHHHHHHHHhhhcCCcEEEEEecCCCcccccccccc
Q 001128 545 KCWYDICNAISQAQR-----LIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMD 619 (1148)
Q Consensus 545 ~~f~al~eAI~~Ar~-----sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILVwD~~~s~~~~g~k~~ 619 (1148)
+.|+.+++.|++|++ +|+|+.|.+. + +..|.++|++||++||+|+||+ |..+....
T Consensus 347 ~sf~~v~~~I~~A~~dp~v~~I~it~Y~~~-------~-----d~~I~~AL~~AA~rGV~VrVLv-d~~a~~~~------ 407 (687)
T 1xdp_A 347 HTFEHVLELLRQASFDPSVLAIKINIYRVA-------K-----DSRIIDSMIHAAHNGKKVTVVV-ELQARFDE------ 407 (687)
T ss_dssp BCTHHHHHHHHHHHHCTTEEEEEEEESSCC-------T-----TCHHHHHHHHHHHTTCEEEEEE-CTTCSSTT------
T ss_pred hhhhhHHHHHHHHhhCCcceEEEEEeeeec-------C-----cHHHHHHHHHHHhcCCEEEEEE-CCCcccch------
Confidence 578999999999997 9999888542 2 2579999999999999999997 76542110
Q ss_pred cccccccHHHHHHhhcCCcEEEEccCcccccccccccccccccccccceEEEEcCCCCCCCccEEEEECCccCCCCCCCC
Q 001128 620 GVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDN 699 (1148)
Q Consensus 620 g~m~t~~~et~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt 699 (1148)
.......+.|+.+||+|....+ .++.|.|++|||++.++ .-+..|||||.|+....+
T Consensus 408 ----~~n~~~~~~L~~aGV~V~~~~~----------------~~k~H~Ki~VID~re~~-~i~~~a~iGS~N~d~rs~-- 464 (687)
T 1xdp_A 408 ----EANIHWAKRLTEAGVHVIFSAP----------------GLKIHAKLFLISRKENG-EVVRYAHIGTGNFNEKTA-- 464 (687)
T ss_dssp ----TTTTTTTHHHHHHTCEEEECCT----------------TCEECCEEEEEEEEETT-EEEEEEEEESSCSCTTGG--
T ss_pred ----hhHHHHHHHHHHCCCEEEEecC----------------CccccceEEEEEeccCC-eEEEEEEEeCCcCCcchh--
Confidence 0011234556788999976522 24699999999952111 011239999999876422
Q ss_pred CCCCcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCH-HHHHHHHHHHHHHHhhcCCCCccccCCchhhhhhh
Q 001128 700 PHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGP-AAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRI 778 (1148)
Q Consensus 700 ~~H~l~d~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GP-aa~Dl~~~F~qrWn~~t~~~~~~~l~~~~~~l~~~ 778 (1148)
.-|+|+++++.|+ +|.++...|...|....... +
T Consensus 465 -------------------------------~~n~D~~l~i~~~~i~~~l~~~F~~~~~~s~~~~-------~------- 499 (687)
T 1xdp_A 465 -------------------------------RLYTDYSLLTADARITNEVRRVFNFIENPYRPVT-------F------- 499 (687)
T ss_dssp -------------------------------GTEEEEEEEECCHHHHHHHHHHHHHHHCTTSCCC-------C-------
T ss_pred -------------------------------hhcceEEEEEeCHHHHHHHHHHHHHHHhhccccc-------h-------
Confidence 3479999999987 69999999999998643210 0
Q ss_pred ccCCCccCCCCCCCcccCCCCCceEEEEeecCCcccccCCCChhhhcccccccCcccchhhHHHHHHHHHHHhhcc----
Q 001128 779 ERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQH---- 854 (1148)
Q Consensus 779 ~~~p~~~~~~~~p~~~~~~~~~~~vQvlRS~~~~s~~~~P~~P~~~~~~~l~~g~~~~~e~sI~~Ayl~aI~~Ak~---- 854 (1148)
..+ +.+ |.. ....+...+...|+.|++
T Consensus 500 --------------------~~l----~~s---------P~~----------------~~~~l~~~I~~ei~~A~~g~~~ 530 (687)
T 1xdp_A 500 --------------------DYL----MVS---------PQN----------------SRRLLYEMVDREIANAQQGLPS 530 (687)
T ss_dssp --------------------SSC----EEE---------TTS----------------HHHHHHHHHHHHHHHHHTTCCC
T ss_pred --------------------hhe----eeC---------Cch----------------hhHHHHHHHHHHHHHHHcCCCC
Confidence 000 000 100 122455566667888887
Q ss_pred EEEEEEeEeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCC---CCCCCcchhHHHHHHHHhHh
Q 001128 855 FIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPE---GVPTGAATQRILFWQHKTMQ 931 (1148)
Q Consensus 855 fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Pe---g~p~~~s~~~il~~~~rTm~ 931 (1148)
+|+|.+.| +++. .+..+|.+| +++||+|+||+...-. |.++ .++
T Consensus 531 ~I~i~~~~-lpD~-----------------~ii~AL~~A--a~rGV~VrLivrg~c~l~pgvp~-~sd------------ 577 (687)
T 1xdp_A 531 GITLKLNN-LVDK-----------------GLVDRLYAA--SSSGVPVNLLVRGMCSLIPNLEG-ISD------------ 577 (687)
T ss_dssp CEEEEESC-BCCH-----------------HHHHHHHHH--HHTTCCEEEEESSCBCBCTTCTT-TST------------
T ss_pred EEEEEeCC-CCCH-----------------HHHHHHHHH--HHCCCEEEEEEecccccCCCCCC-CCC------------
Confidence 89999887 4442 466666665 3699999999964310 1110 000
Q ss_pred hHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCCcceeeeeEEEEE---eCe
Q 001128 932 MMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIV---DDE 1008 (1148)
Q Consensus 932 ~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~L~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~IYVHSKlmIV---DD~ 1008 (1148)
.+.++- + + + ...=|+|+++. ||+
T Consensus 578 -------------ni~V~s----~---~--------------------------------~--r~Leh~rI~~f~~~dd~ 603 (687)
T 1xdp_A 578 -------------NIRAIS----I---V--------------------------------D--RYLEHDRVYIFENGGDK 603 (687)
T ss_dssp -------------TEEEEE----E---C--------------------------------S--SSEECCCEEEECGGGSC
T ss_pred -------------CEEEEE----e---h--------------------------------h--HHhhCCeEEEEcCCCCC
Confidence 011100 0 0 0 01238888888 889
Q ss_pred EEEEcccccccccCCCCCCcceEEEEeCcchh
Q 001128 1009 YVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1040 (1148)
Q Consensus 1009 ~viIGSANLN~RSm~G~~DsEiav~i~dp~~~ 1040 (1148)
+++||||||+.|||. ++-|+++.|+|+++.
T Consensus 604 ~~~IGSAN~d~Rsl~--~n~Ev~~~I~d~~~~ 633 (687)
T 1xdp_A 604 KVYLSSADWMTRNID--YRIEVATPLLDPRLK 633 (687)
T ss_dssp EEEEESCCBSHHHHH--SEEEEEEECCSHHHH
T ss_pred EEEEEcCccchhhhh--hheeeeEEecCHHHH
Confidence 999999999999998 899999999998753
No 8
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=99.83 E-value=9.3e-21 Score=193.75 Aligned_cols=141 Identities=18% Similarity=0.299 Sum_probs=108.4
Q ss_pred CcccccCCCCCcceeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCC
Q 001128 329 NMQIVPSTKGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDP 408 (1148)
Q Consensus 329 g~q~Va~q~~~~~~~Ll~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NP 408 (1148)
..-.|+.......+.+++|+|+|+|++|++|+.+|..+++. +|.| ..+++||||+|.+++++++||+++++|+||
T Consensus 11 ~~~~~~~~~~~~~~~~~~g~L~V~VieA~~L~~~D~~~~~~--~f~~---~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP 85 (157)
T 2fk9_A 11 SSGLVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHS--LFKK---GHQLLDPYLTVSVDQVRVGQTSTKQKTNKP 85 (157)
T ss_dssp CSCCCC-------CCCEEEEEEEEEEEEECCCCCHHHHHTT--TSSS---SCCCCCEEEEEEETTEEEEECCCCSSCSSC
T ss_pred cCccccCCCCcchhccCccEEEEEEEEEECCCCcccccccc--cccc---CCCCCCeEEEEEECCEeeEEeeecCCCCCC
Confidence 34455554344456688999999999999999888543210 1111 112389999999999888899999999999
Q ss_pred eeceEEEEEecCCCceEEEEEEEccCCC-CcceeeEEEeceeeccC----CcccceeeeccCCCCCCCCCCcEEEEEEEe
Q 001128 409 VWQQHFYVPVAHSAAEVHFFVKDSDVVG-SELIGTVAIPVEQIYSG----GKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1148)
Q Consensus 409 vWNE~F~f~v~~~~~~L~~~V~D~D~~~-ddfIG~v~IpL~eL~~G----~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~ 483 (1148)
+|||+|.|.+.. ...|.|+|||+|..+ ||+||++.|+|++|..+ ...+.||+|.. .|+|+|+++|.
T Consensus 86 ~WNE~F~f~v~~-~~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~--------~G~i~l~l~~~ 156 (157)
T 2fk9_A 86 TYNEEFCANVTD-GGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP--------EGKVFVVITLT 156 (157)
T ss_dssp EEEEEEEEEEEE-ECEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS--------SCEEEEEEEEC
T ss_pred ccCcEEEEEcCC-CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC--------CcEEEEEEEEE
Confidence 999999999864 468999999999865 88999999999999865 66789999942 36899999884
No 9
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=99.82 E-value=2.1e-19 Score=219.32 Aligned_cols=269 Identities=14% Similarity=0.184 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHHhcc-----ceEEEEeeccceeeEEeCCCCchHHHHHHHHHHhhhcCCcEEEEEecCCCcccccccccc
Q 001128 545 KCWYDICNAISQAQR-----LIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMD 619 (1148)
Q Consensus 545 ~~f~al~eAI~~Ar~-----sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILVwD~~~s~~~~g~k~~ 619 (1148)
+.|+.++++|++|++ +|.|+.|.+ .++ ..|.++|++||++||+|+||| | .+++...
T Consensus 352 ~sf~~vi~~I~~A~~DP~V~sIk~tlYr~-------~~d-----s~Iv~ALi~AA~rGv~V~vLv-e-l~arfde----- 412 (705)
T 2o8r_A 352 YTYDYVVRLLMEAAISPDVSEIRLTQYRV-------AEN-----SSIISALEAAAQSGKKVSVFV-E-LKARFDE----- 412 (705)
T ss_dssp BCSHHHHHHHHHHHTCTTEEEEEEEESCC-------CSC-----CHHHHHHHHHHHTTCEEEEEE-C-CCSCC-------
T ss_pred HhHHHHHHHHHHhccCCCceEEEEEEEEE-------cCC-----HHHHHHHHHHHHCCCEEEEEE-e-CCCCcch-----
Confidence 679999999999999 999998854 222 589999999999999999997 7 4443210
Q ss_pred cccccccHHHHHHhhcCCcEEEEccCcccccccccccccccccccccceEEEEcCC--CCCCCccEEEEECCccCCCCCC
Q 001128 620 GVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDAD--AGYNRRKIIAFVGGLDLCDGRY 697 (1148)
Q Consensus 620 g~m~t~~~et~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~--~~~~~r~~vAFVGGiDL~dgRw 697 (1148)
..+..+.+.|+.+||+|...- ..+++|+|++|||++ .+++- +..+++|.-|..+.
T Consensus 413 ----e~ni~wa~~Le~aGv~Vv~g~----------------~~lk~H~Ki~lIdrr~~~~g~~-~~y~~igtGN~n~~-- 469 (705)
T 2o8r_A 413 ----ENNLRLSERMRRSGIRIVYSM----------------PGLKVHAKTALILYHTPAGERP-QGIALLSTGNFNET-- 469 (705)
T ss_dssp ------CHHHHHHHHHHTCEEEECC----------------TTCCBCCCEEEEEECCCSSSCC-CEEEEEESSCSSCC--
T ss_pred ----hhhHHHHHHHHHCCCEEEEcc----------------CCCCceeEEEEEecccccCCce-eEEEeccccceeee--
Confidence 012356777889999987531 236899999999985 32211 12333332222221
Q ss_pred CCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCH-HHHHHHHHHHHHHHhhcCCCCccccCCchhhhh
Q 001128 698 DNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGP-AAYDVLTNFEERWRKASKPHGIKKLKSGDDALL 776 (1148)
Q Consensus 698 Dt~~H~l~d~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GP-aa~Dl~~~F~qrWn~~t~~~~~~~l~~~~~~l~ 776 (1148)
...-|.|+++...+| ++.|+...|...|.....
T Consensus 470 -------------------------------tariy~D~~l~t~~~~i~~dl~~vF~~~tg~~~~--------------- 503 (705)
T 2o8r_A 470 -------------------------------TARIYSDTTLMTANTDIVHDVYRLFRILDGDPEP--------------- 503 (705)
T ss_dssp -------------------------------CSSCEEEEEEEECCHHHHHHHHHHHHHHTTCCCC---------------
T ss_pred -------------------------------EEEEEeeeeeeecChHHHHHHHHHHHHHhCCCCC---------------
Confidence 113478888888886 569999999666642100
Q ss_pred hhccCCCccCCCCCCCcccCCCCCceEEEEeecCCcccccCCCChhhhcccccccCcccchhhHHHHHHHHHHHhhcc--
Q 001128 777 RIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQH-- 854 (1148)
Q Consensus 777 ~~~~~p~~~~~~~~p~~~~~~~~~~~vQvlRS~~~~s~~~~P~~P~~~~~~~l~~g~~~~~e~sI~~Ayl~aI~~Ak~-- 854 (1148)
..+ .|++-+ |.. ....|.+.+..+|.+|++
T Consensus 504 ----------------------~~~-~~l~~s---------P~~----------------~~~~i~~~i~~eI~~Ak~G~ 535 (705)
T 2o8r_A 504 ----------------------ARF-SRLLVA---------RYN----------------MGEAITNLIEREIENVKRGK 535 (705)
T ss_dssp ----------------------SCC-SSCEET---------TTT----------------HHHHHHHHHHHHHHHHHTTC
T ss_pred ----------------------CCc-eEEEEC---------Cch----------------HHHHHHHHHHHHHHHHhcCC
Confidence 000 121111 111 134789999999999999
Q ss_pred --EEEEEEeEeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCC----CCCCCCCcchhHHHHHHHH
Q 001128 855 --FIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMW----PEGVPTGAATQRILFWQHK 928 (1148)
Q Consensus 855 --fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~----Peg~p~~~s~~~il~~~~r 928 (1148)
+|+|.++| +++. .+..+|.+| +.+||+|.||+-.. | |.+ .+
T Consensus 536 ~a~I~ik~n~-l~D~-----------------~ii~aL~~A--s~~GV~V~LIVRGiC~L~P-gv~--~s---------- 582 (705)
T 2o8r_A 536 RGYMLLKMNG-LQDK-----------------NVITQLYRA--SEAGVEIDLIVRGICCLVP-DMP--QS---------- 582 (705)
T ss_dssp CCEEEEEESC-BCCH-----------------HHHHHHHHH--HHTTCEEEEEESSCBCSCC-SSG--GG----------
T ss_pred CCEEEEEcCC-CCCH-----------------HHHHHHHHH--HHCCCeEEEEEccccccCC-CCC--CC----------
Confidence 99999998 5542 466666665 36899999999331 1 100 00
Q ss_pred hHhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCCcceeeeeEEEEE---
Q 001128 929 TMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIV--- 1005 (1148)
Q Consensus 929 Tm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~L~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~IYVHSKlmIV--- 1005 (1148)
..+.+.. ++ + ...=|+|++++
T Consensus 583 ---------------dni~V~S-------iv--------------------------------g--r~Leh~RIy~f~~g 606 (705)
T 2o8r_A 583 ---------------RNIRVTR-------LV--------------------------------D--MYLEHSRIWCFHNG 606 (705)
T ss_dssp ---------------TTEEEEE-------CC--------------------------------S--SSEECCCEEEECGG
T ss_pred ---------------CCeEEEe-------eH--------------------------------H--HHHhcCEEEEEECC
Confidence 0111110 00 0 11338899999
Q ss_pred eCeEEEEcccccccccCCCCCCcceEEEEeCcchh
Q 001128 1006 DDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1040 (1148)
Q Consensus 1006 DD~~viIGSANLN~RSm~G~~DsEiav~i~dp~~~ 1040 (1148)
||+++.||||||+.|||. ++-|+++.|+|+++.
T Consensus 607 d~~~~~IGSAn~m~Rnl~--~r~Ev~~~i~d~~~~ 639 (705)
T 2o8r_A 607 GKEEVFISSADWMKRNLY--NRIETACPVLDPTLR 639 (705)
T ss_dssp GSCEEEEESCCBCHHHHH--TSBCEEEECCSHHHH
T ss_pred CCcEEEEeccccchhhhh--heeEEEEEEcCHHHH
Confidence 999999999999999998 999999999999753
No 10
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=99.79 E-value=7e-19 Score=173.65 Aligned_cols=123 Identities=22% Similarity=0.333 Sum_probs=107.5
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCC
Q 001128 343 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA 422 (1148)
Q Consensus 343 ~Ll~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~ 422 (1148)
....|+|+|+|++|++|+.+|..+. +||||+|.+++.+. ||++++++.||+|||+|.|.+.+..
T Consensus 9 ~~~~~~L~v~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~-kT~~~~~t~nP~wne~f~f~~~~~~ 72 (133)
T 2ep6_A 9 VKDVGILQVKVLKAADLLAADFSGK---------------SDPFCLLELGNDRL-QTHTVYKNLNPEWNKVFTFPIKDIH 72 (133)
T ss_dssp CCCSEEEEEEEEEEESCCCSSSSSC---------------CCEEEEEEETTEEE-ECCCCSSCSSCCCCEEEEEEESCTT
T ss_pred cCCceEEEEEEEeeECCCCCCCCCC---------------cCeEEEEEECCEEE-EeeeecCCCCCccccEEEEEecCCC
Confidence 3456899999999999999988776 89999999999875 9999999999999999999998777
Q ss_pred ceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEEEec
Q 001128 423 AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1148)
Q Consensus 423 ~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~p 484 (1148)
..|+|+|||+|.. .+++||++.|++.++..|. +.|++|.+.+++. ...|+|+|.++|..
T Consensus 73 ~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~-~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 73 DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ-AFKGVIYLEMDLIY 132 (133)
T ss_dssp CEEEEEEEEEETTEEEEECCBCEEEGGGCCSSC--CEECCCBCSCTTS-CCSSEEEEEEEEEE
T ss_pred CEEEEEEEECCCCCCCCeeEEEEEEHHHccCCC--ceEEEeecCCCCC-ccceEEEEEEEEEe
Confidence 8999999999986 5899999999999998764 5899998776543 34579999999863
No 11
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=7.2e-19 Score=174.72 Aligned_cols=124 Identities=27% Similarity=0.463 Sum_probs=107.6
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCC---
Q 001128 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS--- 421 (1148)
Q Consensus 345 l~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~--- 421 (1148)
..|+|.|+|++|++|+.+|. +. +||||+|.+.+++ +||++++++.||+|||+|.|.+...
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~-g~---------------~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~ 67 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKF-GK---------------PDPIVSVIFKDEK-KKTKKVDNELNPVWNEILEFDLRGIPLD 67 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSS-SC---------------CCEEEEEECSSCE-EECCCCCSCSSCEEEEEEEEECSSCCCC
T ss_pred CCcEEEEEEEEeeCCCCCCC-CC---------------CCeEEEEEECCEe-EEeeeecCCCCCccCcEEEEEecccccC
Confidence 45789999999999999887 65 8999999999887 5999999999999999999998643
Q ss_pred -CceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceee---eccCCCCCCCCCCcEEEEEEEecccc
Q 001128 422 -AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYP---VLNGSGKPCKPGATLTLSIQYTPMER 487 (1148)
Q Consensus 422 -~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~p---L~~~~Gk~~~~~g~L~L~l~f~p~~~ 487 (1148)
...|+|+|||+|.. .+++||++.|++.+|..+...+.|++ |.+.+++. ..|+|+|+++|.|...
T Consensus 68 ~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~--~~G~l~l~~~~~p~~~ 136 (140)
T 2dmh_A 68 FSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQD--TGATIDLVIGYDPPSG 136 (140)
T ss_dssp TTCEEEEEEEETTCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCE--EEEEEEEEEEECCCBS
T ss_pred CCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCC--CCCEEEEEEEEECCCC
Confidence 47899999999986 57899999999999998887789988 77666653 3489999999998543
No 12
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=99.78 E-value=1.5e-18 Score=175.24 Aligned_cols=123 Identities=20% Similarity=0.341 Sum_probs=99.7
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC-----EEEEeeeeeeCCCCCeeceEEEEEecC
Q 001128 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-----AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g-----~~~~RTkvi~nt~NPvWNE~F~f~v~~ 420 (1148)
.|+|+|+|++|++|+.+|..+. +||||+|.+.+ ....||++++++.||+|||+|.|.+..
T Consensus 19 ~~~L~V~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 83 (153)
T 3b7y_A 19 SRIVRVRVIAGIGLAKKDILGA---------------SDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHP 83 (153)
T ss_dssp CEEEEEEEEEEESCC----------------------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECT
T ss_pred ccEEEEEEEEeeCCCCCCCCCC---------------CCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecC
Confidence 4679999999999999887776 89999999974 345699999999999999999999987
Q ss_pred CCceEEEEEEEccCC-CCcceeeEEEeceeeccCCcc------cceeeeccCCCCCCCCCCcEEEEEEEec
Q 001128 421 SAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKV------EGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1148)
Q Consensus 421 ~~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~------d~W~pL~~~~Gk~~~~~g~L~L~l~f~p 484 (1148)
....|+|+|||+|.. .+++||++.|+|.+|..+... +.||+|....++. +..|+|+|+++|.|
T Consensus 84 ~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 84 QQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKS-RVKGYLRLKMTYLP 153 (153)
T ss_dssp TTCEEEEEEEECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTC-CCCSEEEEEEEECC
T ss_pred CCCEEEEEEEECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCC-CcceEEEEEEEEeC
Confidence 778999999999986 588999999999999876532 5899997654432 45689999999986
No 13
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=99.78 E-value=7.8e-19 Score=174.25 Aligned_cols=130 Identities=17% Similarity=0.326 Sum_probs=104.8
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCC
Q 001128 343 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA 422 (1148)
Q Consensus 343 ~Ll~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~ 422 (1148)
.+++|+|+|+|++|++|+.+|.++++. +++. .+...+||||+|.+++..++||+++.+|.||+|||+|.|.+...
T Consensus 2 ~~~~g~L~v~v~~a~~L~~~d~~~~~~---~g~~-~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~- 76 (136)
T 1gmi_A 2 VVFNGLLKIKICEAVSLKPTAWSLRDA---VGPR-PQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG- 76 (136)
T ss_dssp CCEEEEEEEEEEEEESCCCCHHHHCC----CCSS-CCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-
T ss_pred cccceEEEEEEEeCcCCCCcccccccc---cccc-cCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-
Confidence 467899999999999999888654310 1110 01123899999999998888999999999999999999998755
Q ss_pred ceEEEEEEEccCC-CCcceeeEEEeceeeccC--CcccceeeeccCCCCCCCCCCcEEEEEEEecc
Q 001128 423 AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSG--GKVEGTYPVLNGSGKPCKPGATLTLSIQYTPM 485 (1148)
Q Consensus 423 ~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G--~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~p~ 485 (1148)
..|.|+|||+|.. .|++||++.|++.++..+ ...+.|++|. +.|+|+|+++|...
T Consensus 77 ~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~i~l~l~~~~~ 134 (136)
T 1gmi_A 77 RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE--------PEGKVYVIIDLSGS 134 (136)
T ss_dssp CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB--------SSCEEEEEEEEEEE
T ss_pred CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcC--------CCeEEEEEEEEEec
Confidence 7899999999975 488999999999999864 3358999984 23699999999764
No 14
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=99.77 E-value=4.1e-18 Score=171.01 Aligned_cols=120 Identities=25% Similarity=0.390 Sum_probs=104.4
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCCce
Q 001128 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAE 424 (1148)
Q Consensus 345 l~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~~~ 424 (1148)
..|.|.|+|++|++|+.+|..+. +||||+|.+++... ||++++++.||+|||+|.|.+......
T Consensus 15 ~~~~L~V~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~-kT~~~~~t~nP~Wne~f~f~v~~~~~~ 78 (148)
T 3kwu_A 15 WSAKISITVVCAQGLQAKDKTGS---------------SDPYVTVQVGKTKK-RTKTIYGNLNPVWEENFHFECHNSSDR 78 (148)
T ss_dssp CCEEEEEEEEEEESCCCCSTTSC---------------CCEEEEEEETTEEE-ECCCCCSCSSCEEEEEEEEEECSTTCE
T ss_pred cccEEEEEEEeeeCCCCCCCCCC---------------cCeEEEEEECCEEE-ECCccCCCCCCCcccEEEEEecCCCCE
Confidence 46899999999999999988776 89999999988775 999999999999999999999877889
Q ss_pred EEEEEEEccCC------------CCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEEEe
Q 001128 425 VHFFVKDSDVV------------GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1148)
Q Consensus 425 L~~~V~D~D~~------------~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~ 483 (1148)
|.|+|||+|.. .+++||++.|++.++. ...+.||+|....++. ...|+|+|+++|.
T Consensus 79 l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~~~~~~-~~~G~i~l~l~~e 146 (148)
T 3kwu_A 79 IKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDKRTDKS-AVSGAIRLHISVE 146 (148)
T ss_dssp EEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBCSSTTC-CCCCEEEEEEEEE
T ss_pred EEEEEEECCCCccccccccccCCCCccEEEEEEEHHHCc--CCCCEEEEcccCCCCC-CCceEEEEEEEEE
Confidence 99999999974 6999999999999994 3457999997554433 3457999999985
No 15
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=99.77 E-value=5.4e-19 Score=174.79 Aligned_cols=125 Identities=23% Similarity=0.423 Sum_probs=108.7
Q ss_pred eeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeee-CCCCCeeceEEEEEecCCC
Q 001128 344 LLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVIS-NSEDPVWQQHFYVPVAHSA 422 (1148)
Q Consensus 344 Ll~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~-nt~NPvWNE~F~f~v~~~~ 422 (1148)
...|+|+|+|++|++|+.+|..+. +||||+|.+.+.+. ||++++ ++.||+|||+|.|.+....
T Consensus 7 ~~~~~L~v~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~-kT~~~~~~~~nP~Wne~f~f~v~~~~ 70 (136)
T 1wfj_A 7 GPHGTLEVVLVSAKGLEDADFLNN---------------MDPYVQLTCRTQDQ-KSNVAEGMGTTPEWNETFIFTVSEGT 70 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCSSCS---------------SCCCEEEESSSCEE-ECCCCTTCCSSCEEEEEEEEEEESSC
T ss_pred CCcEEEEEEEEeccCCCCcccCCC---------------cCceEEEEECCccc-eeEeccCCCCCCccCcEEEEEECCCC
Confidence 356899999999999999887776 89999999999875 999998 8999999999999998777
Q ss_pred ceEEEEEEEccCC-CCcceeeEEEeceee-ccCCcccceeeeccCCCCCCCCCCcEEEEEEEeccccc
Q 001128 423 AEVHFFVKDSDVV-GSELIGTVAIPVEQI-YSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERL 488 (1148)
Q Consensus 423 ~~L~~~V~D~D~~-~ddfIG~v~IpL~eL-~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~p~~~~ 488 (1148)
..|+|+|||+|.. .+++||++.|+|.++ ..+...+.||+|. .+++ ..|+|+|+++|.|....
T Consensus 71 ~~l~~~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~-~~~~---~~G~i~l~l~~~p~~~~ 134 (136)
T 1wfj_A 71 TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV-KDEE---YKGEIWVALSFKPSGPS 134 (136)
T ss_dssp CEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEE-ETTE---EEEEEEEEEEEEECCSC
T ss_pred CEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCCCcEEEEee-cCCc---cCEEEEEEEEEEeCCCC
Confidence 8999999999985 589999999999999 4566667899997 4443 34799999999997654
No 16
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=99.75 E-value=2.5e-18 Score=167.59 Aligned_cols=117 Identities=21% Similarity=0.354 Sum_probs=98.1
Q ss_pred ceEEEEEEEEeeCCCCC---CCCCccccccccccCCCCCCCCcEEEEEECC--EEEEeeeeeeCCCCCeeceEEEEEecC
Q 001128 346 HGNLDIWIYSAKNLPNM---DMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~---D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g--~~~~RTkvi~nt~NPvWNE~F~f~v~~ 420 (1148)
.|.|.|+|++|++|+.+ |..++ +||||+|.+.+ ...+||++++++.||+|||+|.|.+..
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~---------------~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 66 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDT---------------PDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDP 66 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCC---------------CCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECT
T ss_pred CcEEEEEEEeeeCCCCCCccccCCC---------------CCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecC
Confidence 47899999999999975 44454 89999999986 244699999999999999999999954
Q ss_pred C-CceEEEEEEEccCCCCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEEEe
Q 001128 421 S-AAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1148)
Q Consensus 421 ~-~~~L~~~V~D~D~~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~ 483 (1148)
. ...|+|+|||+|..++++||++.|+|.+|..|...+.|++|.. . ..|.|+|+++..
T Consensus 67 ~~~~~l~i~V~d~d~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~-~-----~~g~i~~~le~~ 124 (126)
T 1rlw_A 67 NQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQ-V-----TEMVLEMSLEVA 124 (126)
T ss_dssp TSCCEEEEEEEECCSSCCEEEEEEEEEGGGSCTTCEEEEEEEETT-T-----EEEEEEEEEECC
T ss_pred CCCCEEEEEEEECCCCCCceeEEEEEEHHHccCCCcEEEEEEcCC-C-----ceEEEEEEEEeC
Confidence 4 5789999999999889999999999999999988899999953 1 224666666543
No 17
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=99.74 E-value=1.4e-17 Score=172.46 Aligned_cols=124 Identities=21% Similarity=0.352 Sum_probs=98.9
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC-----EEEEeeeeeeCCCCCeeceEEEEEecC
Q 001128 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-----AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g-----~~~~RTkvi~nt~NPvWNE~F~f~v~~ 420 (1148)
.|+|+|+|++|++|+.+|..++ +||||+|.+.+ ....||++++++.||+|||+|.|.+..
T Consensus 7 ~g~L~V~v~~a~~L~~~d~~g~---------------~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~ 71 (176)
T 3m7f_B 7 TRVVRVKVIAGIGLAKKDILGA---------------SDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLP 71 (176)
T ss_dssp CEEEEEEEEEEESCC---CCCC---------------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECT
T ss_pred cEEEEEEEEEeeCCCCcCCCCC---------------cCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcC
Confidence 4789999999999999988776 89999999975 144699999999999999999999987
Q ss_pred CCceEEEEEEEccCC-CCcceeeEEEeceeeccCCcc-c-----ceeeeccCCCCCCCCCCcEEEEEEEecc
Q 001128 421 SAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKV-E-----GTYPVLNGSGKPCKPGATLTLSIQYTPM 485 (1148)
Q Consensus 421 ~~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~-d-----~W~pL~~~~Gk~~~~~g~L~L~l~f~p~ 485 (1148)
....|.|+|||+|.. .++|||++.|+|.+|..+... + .||+|....++. +..|+|+|+|+|.|.
T Consensus 72 ~~~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 72 QRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKS-RVKGYLRLKMTYLPK 142 (176)
T ss_dssp TTCEEEEEEEECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTC-CCCSEEEEEEEECC-
T ss_pred CCCEEEEEEEECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCC-ccCEEEEEEEEEEeC
Confidence 778999999999985 589999999999999876432 2 799997654432 345899999999997
No 18
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=99.72 E-value=3.7e-17 Score=161.09 Aligned_cols=119 Identities=21% Similarity=0.322 Sum_probs=98.1
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC-EEEEeeeeeeCCCCCeeceEEEEEecCCCceEE
Q 001128 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-AVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVH 426 (1148)
Q Consensus 348 tL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g-~~~~RTkvi~nt~NPvWNE~F~f~v~~~~~~L~ 426 (1148)
.|+|+|++|++|+.+|.++. +||||+|.+.+ ...+||+++++++||+|||+|.|.+.... .|.
T Consensus 6 ~L~V~v~~a~~L~~~d~~g~---------------sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~l~ 69 (132)
T 3pyc_A 6 KIRLTVLCAKNLAKKDFFRL---------------PDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD-SIT 69 (132)
T ss_dssp EEEEEEEEEESCCCCSTTCC---------------CCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETTC-CEE
T ss_pred EEEEEEEEeECCCCCCCCCC---------------cCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCCC-EEE
Confidence 69999999999999998876 89999999975 34469999999999999999999997654 599
Q ss_pred EEEEEccCCC----CcceeeEEEeceeec-cCCcccceeeeccCCC-CCCCCCCcEEEEEEE
Q 001128 427 FFVKDSDVVG----SELIGTVAIPVEQIY-SGGKVEGTYPVLNGSG-KPCKPGATLTLSIQY 482 (1148)
Q Consensus 427 ~~V~D~D~~~----ddfIG~v~IpL~eL~-~G~~~d~W~pL~~~~G-k~~~~~g~L~L~l~f 482 (1148)
|+|||+|..+ ++|||++.|++.+|. .+.....|++|....+ +..+..|+|+|+|++
T Consensus 70 ~~v~d~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 70 ISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp EEEEEGGGTTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred EEEEECCCCCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 9999999865 799999999999883 3333458899976532 223456899998875
No 19
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=99.71 E-value=2.6e-17 Score=170.84 Aligned_cols=127 Identities=24% Similarity=0.349 Sum_probs=101.9
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCC
Q 001128 343 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA 422 (1148)
Q Consensus 343 ~Ll~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~ 422 (1148)
....|+|+|+|++|++|++.+..++ +||||+|.+++.. +||+++++++||+|||+|.|.+. ..
T Consensus 32 ~~~~~~L~V~V~~A~~L~~~~~~~~---------------sDPYv~v~~~~~~-~kT~v~~~tlnP~Wne~f~f~v~-~~ 94 (173)
T 2nq3_A 32 LTMKSQLQITVISAKLKENKKNWFG---------------PSPYVEVTVDGQS-KKTEKCNNTNSPKWKQPLTVIVT-PV 94 (173)
T ss_dssp CSCCEEEEEEEEEEEECCCC--CCC---------------CCEEEEEEETTEE-EECCCCSSCSSCEEEEEEEEEEC-TT
T ss_pred cCCceEEEEEEEEeECCCCcccCCC---------------CCeEEEEEECCEE-eEccccCCCCCCeECCEEEEEeC-CC
Confidence 3456889999999999994433333 7999999999954 59999999999999999999985 47
Q ss_pred ceEEEEEEEccCC-CCcceeeEEEeceeeccCC-----cccceeeeccCCCCCCCCCCcEEEEEEEecccc
Q 001128 423 AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGG-----KVEGTYPVLNGSGKPCKPGATLTLSIQYTPMER 487 (1148)
Q Consensus 423 ~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~-----~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~p~~~ 487 (1148)
..|.|+|||+|.. .+++||++.|+|.+|..+. ..+.|++|...++. .+..|+|+|.+.+.+...
T Consensus 95 ~~L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~-~~~~G~L~v~l~~l~~~~ 164 (173)
T 2nq3_A 95 SKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEP-TETIGDLSICLDGLQLES 164 (173)
T ss_dssp CEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCT-TSEEEEEEEEEESEECC-
T ss_pred CEEEEEEEECCCCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCC-CcccEEEEEEEeeeecch
Confidence 8999999999986 5789999999999998542 12569999876432 234579999999987643
No 20
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=99.65 E-value=4.4e-16 Score=154.38 Aligned_cols=105 Identities=14% Similarity=0.267 Sum_probs=89.5
Q ss_pred eeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC----CEEEEeeeeeeCCCCCeeceEEEEE-e
Q 001128 344 LLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA----GAVVGRTFVISNSEDPVWQQHFYVP-V 418 (1148)
Q Consensus 344 Ll~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~----g~~~~RTkvi~nt~NPvWNE~F~f~-v 418 (1148)
...|.|.|+|++|++|+. +..+. +||||+|.+. +....||++++++.||+|||+|.|. +
T Consensus 17 ~~~~~L~V~V~~a~~L~~-~~~g~---------------~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v 80 (134)
T 2b3r_A 17 YRNGTLFIMVMHIKDLVT-EDGAD---------------PNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGY 80 (134)
T ss_dssp EETTEEEEEEEEEECCCC-TTSCC---------------CCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESC
T ss_pred ecCCEEEEEEEEeeCCCC-CCCCC---------------CCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCc
Confidence 456789999999999995 65555 8999999992 2334599999999999999999999 6
Q ss_pred cC---CCceEEEEEEEccCCC-CcceeeEEEeceeeccCCcccceeeecc
Q 001128 419 AH---SAAEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVLN 464 (1148)
Q Consensus 419 ~~---~~~~L~~~V~D~D~~~-ddfIG~v~IpL~eL~~G~~~d~W~pL~~ 464 (1148)
.. ....|.|+|||+|..+ +++||++.|+|.+|..+...+.||+|.+
T Consensus 81 ~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~ 130 (134)
T 2b3r_A 81 SKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTA 130 (134)
T ss_dssp CHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC
T ss_pred CHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCC
Confidence 53 2478999999999864 8899999999999998888899999964
No 21
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.65 E-value=3.8e-16 Score=157.79 Aligned_cols=105 Identities=26% Similarity=0.320 Sum_probs=91.6
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CEEEEeeeeeeCCCCCeeceEEEEEecCC-
Q 001128 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1148)
Q Consensus 345 l~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--g~~~~RTkvi~nt~NPvWNE~F~f~v~~~- 421 (1148)
..|.|.|+|++|++|+.+|..+. +||||+|.+. +....||++++++.||+|||+|.|.+...
T Consensus 40 ~~~~L~V~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~ 104 (152)
T 1rsy_A 40 QNNQLLVGIIQAAELPALDMGGT---------------SDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSE 104 (152)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSC---------------CCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHH
T ss_pred CCCEEEEEEEEeECCCCccCCCC---------------cCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHH
Confidence 35789999999999999887776 8999999994 23345999999999999999999998643
Q ss_pred --CceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeecc
Q 001128 422 --AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLN 464 (1148)
Q Consensus 422 --~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~ 464 (1148)
...|.|+|||+|.. .+++||++.|++.++..|...+.|++|.+
T Consensus 105 l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 150 (152)
T 1rsy_A 105 LGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 150 (152)
T ss_dssp HTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred cCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence 47899999999985 58999999999999998888899999964
No 22
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=5.3e-16 Score=154.48 Aligned_cols=106 Identities=23% Similarity=0.244 Sum_probs=91.2
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CEEEEeeeeeeCCCCCeeceEEEEEecC--
Q 001128 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAVVGRTFVISNSEDPVWQQHFYVPVAH-- 420 (1148)
Q Consensus 345 l~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--g~~~~RTkvi~nt~NPvWNE~F~f~v~~-- 420 (1148)
..|.|.|+|++|++|+.+|..+. +||||+|.+. +....||++++++.||+|||+|.|.+..
T Consensus 24 ~~~~L~v~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~ 88 (141)
T 2d8k_A 24 QESTLTVKIMKAQELPAKDFSGT---------------SDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYE 88 (141)
T ss_dssp SSCCEEEEEEEEESCCCCSSSSC---------------CCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHH
T ss_pred CCCEEEEEEEEeECCCCCCCCCC---------------CCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHH
Confidence 35689999999999999887776 8999999994 2334699999999999999999998532
Q ss_pred --CCceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeeccC
Q 001128 421 --SAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNG 465 (1148)
Q Consensus 421 --~~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~ 465 (1148)
....|+|+|||+|.. .+++||++.|++.+|..+...+.|++|...
T Consensus 89 ~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 136 (141)
T 2d8k_A 89 KVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPS 136 (141)
T ss_dssp HHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEEC
T ss_pred HcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCC
Confidence 247899999999985 589999999999999988878899999754
No 23
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.64 E-value=4.3e-16 Score=156.72 Aligned_cols=106 Identities=24% Similarity=0.371 Sum_probs=91.7
Q ss_pred eeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEeeeeeeCCCCCeeceEEEEEec
Q 001128 344 LLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVA 419 (1148)
Q Consensus 344 Ll~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~RTkvi~nt~NPvWNE~F~f~v~ 419 (1148)
...|.|.|+|++|++|+.+|..+. +||||+|.+.. ....||++++++.||+|||+|.|.+.
T Consensus 28 ~~~~~L~v~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~ 92 (149)
T 1a25_A 28 IDREVLIVVVRDAKNLVPMDPNGL---------------SDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 92 (149)
T ss_dssp ESSSEEEEEEEEEESCCCCSTTSC---------------CCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECC
T ss_pred ecCCEEEEEEEEeeCCCCCCCCCC---------------cCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEec
Confidence 346889999999999999987776 89999999974 33459999999999999999999987
Q ss_pred CC--CceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeeccC
Q 001128 420 HS--AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNG 465 (1148)
Q Consensus 420 ~~--~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~ 465 (1148)
.. ...|.|+|||+|.. .+++||++.|+|.+|..+ ..+.||+|.+.
T Consensus 93 ~~~~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~ 140 (149)
T 1a25_A 93 ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQ 140 (149)
T ss_dssp SGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCH
T ss_pred cccCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcC-ccCCeEEccCC
Confidence 54 36899999999986 588999999999999876 47799999753
No 24
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=99.64 E-value=2.9e-16 Score=156.60 Aligned_cols=104 Identities=26% Similarity=0.320 Sum_probs=90.8
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CEEEEeeeeeeCCCCCeeceEEEEEecCC-
Q 001128 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1148)
Q Consensus 345 l~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--g~~~~RTkvi~nt~NPvWNE~F~f~v~~~- 421 (1148)
..|.|.|+|++|++|+.+|..+. +||||+|.+. +....||++++++.||+|||+|.|.+...
T Consensus 32 ~~~~L~v~v~~a~~L~~~d~~g~---------------~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~ 96 (143)
T 3f04_A 32 QNNQLLVGIIQAAELPALDMGGT---------------SDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSE 96 (143)
T ss_dssp TTTEEEEEEEEEECCCCBGGGBC---------------CCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHH
T ss_pred CCCEEEEEEEEecCCCCCCCCCC---------------cCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhh
Confidence 45789999999999998887765 8999999993 33346999999999999999999998643
Q ss_pred --CceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeec
Q 001128 422 --AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1148)
Q Consensus 422 --~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~ 463 (1148)
...|+|+|||+|.. .+++||++.|+|.+|..+...+.|++|.
T Consensus 97 l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 141 (143)
T 3f04_A 97 LGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp HTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECB
T ss_pred cCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECc
Confidence 37899999999985 5899999999999999888889999995
No 25
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.63 E-value=1.6e-16 Score=158.09 Aligned_cols=109 Identities=25% Similarity=0.298 Sum_probs=93.2
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE-------------EEEeeeeeeCCCCCe
Q 001128 343 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA-------------VVGRTFVISNSEDPV 409 (1148)
Q Consensus 343 ~Ll~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~-------------~~~RTkvi~nt~NPv 409 (1148)
....|.|.|+|++|++|+.+|..+. +||||+|.+.+. ...||+++++++||+
T Consensus 14 ~y~~~~L~V~v~~a~~L~~~d~~g~---------------~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~ 78 (142)
T 1rh8_A 14 NYDLGNLIIHILQARNLVPRDNNGY---------------SDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPE 78 (142)
T ss_dssp EEETTEEEEEEEEEESCCCCSSSSC---------------SCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCE
T ss_pred EEcCCEEEEEEEEecCCCCCCCCCC---------------CCceEEEEEecCCCcccccccccccceeeccccCCCCCCC
Confidence 3447899999999999999988776 899999999863 235999999999999
Q ss_pred eceEEEEE-ecC---CCceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeeccCC
Q 001128 410 WQQHFYVP-VAH---SAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGS 466 (1148)
Q Consensus 410 WNE~F~f~-v~~---~~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~ 466 (1148)
|||+|.|. +.. ....|.|+|||+|.. .+++||++.|+|.++..+...+.||+|....
T Consensus 79 wne~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~ 140 (142)
T 1rh8_A 79 WNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT 140 (142)
T ss_dssp EEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred CCCEEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCccC
Confidence 99999997 532 347899999999986 5889999999999998877788999997543
No 26
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.63 E-value=4.6e-16 Score=152.15 Aligned_cols=101 Identities=25% Similarity=0.339 Sum_probs=83.6
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC----CEEEEeeeeeeCCCCCeeceEEEEEecC-
Q 001128 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA----GAVVGRTFVISNSEDPVWQQHFYVPVAH- 420 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~----g~~~~RTkvi~nt~NPvWNE~F~f~v~~- 420 (1148)
.|.|.|+|++|++|+.+|..+. +||||+|.+. +....||++++++.||+|||+|.|.+..
T Consensus 17 ~~~L~v~v~~a~~L~~~d~~~~---------------~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~ 81 (129)
T 2bwq_A 17 GHQLIVTILGAKDLPSREDGRP---------------RNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHR 81 (129)
T ss_dssp TTEEEEEEEEEESCCCCTTSCC---------------BCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCG
T ss_pred CCEEEEEEEEeeCCCCCCCCCC---------------CCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCH
Confidence 4789999999999999887776 8999999992 2344599999999999999999999532
Q ss_pred ---CCceEEEEEEEccCCC---CcceeeEEEeceeeccCCcccceeee
Q 001128 421 ---SAAEVHFFVKDSDVVG---SELIGTVAIPVEQIYSGGKVEGTYPV 462 (1148)
Q Consensus 421 ---~~~~L~~~V~D~D~~~---ddfIG~v~IpL~eL~~G~~~d~W~pL 462 (1148)
....|.|+|||+|..+ +++||++.|++.++.... .+.||+|
T Consensus 82 ~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L 128 (129)
T 2bwq_A 82 REFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKL 128 (129)
T ss_dssp GGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred HHhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence 2378999999999865 899999999999988644 7899998
No 27
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=99.63 E-value=4.1e-16 Score=157.83 Aligned_cols=107 Identities=23% Similarity=0.373 Sum_probs=90.1
Q ss_pred eeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEeeeeeeCCCCCeeceEEEEEe-
Q 001128 344 LLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPV- 418 (1148)
Q Consensus 344 Ll~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~RTkvi~nt~NPvWNE~F~f~v- 418 (1148)
...|.|.|+|++|++|+.+| .+. +||||+|.+.. ....||++++++.||+|||+|.|.+
T Consensus 24 ~~~~~L~V~v~~a~~L~~~d-~g~---------------~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~ 87 (153)
T 3fbk_A 24 AQDRVLLLHIIEGKGLISKQ-PGT---------------CDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQ 87 (153)
T ss_dssp ESSSEEEEEEEEEESCCCCS-SSC---------------CCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECC
T ss_pred CCCCEEEEEEEEeeCCCCCC-CCC---------------CCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecc
Confidence 45678999999999999888 455 89999999932 2335999999999999999999998
Q ss_pred -cCCCceEEEEEEEccCC-C-CcceeeEEEeceeecc-CCcccceeeeccCC
Q 001128 419 -AHSAAEVHFFVKDSDVV-G-SELIGTVAIPVEQIYS-GGKVEGTYPVLNGS 466 (1148)
Q Consensus 419 -~~~~~~L~~~V~D~D~~-~-ddfIG~v~IpL~eL~~-G~~~d~W~pL~~~~ 466 (1148)
......|.|+|||+|.. . +++||++.|+|.+|.. +...+.||+|.+..
T Consensus 88 ~~~~~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~ 139 (153)
T 3fbk_A 88 EEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEH 139 (153)
T ss_dssp GGGTTSEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTT
T ss_pred cHHhCCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChh
Confidence 44446799999999985 3 8999999999999984 67788999998654
No 28
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.63 E-value=3.6e-16 Score=155.10 Aligned_cols=106 Identities=24% Similarity=0.318 Sum_probs=89.6
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC----CEEEEeeeeeeCCCCCeeceEEEEEecC-
Q 001128 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA----GAVVGRTFVISNSEDPVWQQHFYVPVAH- 420 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~----g~~~~RTkvi~nt~NPvWNE~F~f~v~~- 420 (1148)
.|.|.|+|++|++|+.+|..+. +||||+|.+. +....||++++++.||+|||+|.|.+..
T Consensus 20 ~~~L~v~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~ 84 (141)
T 1v27_A 20 GHQLIVTILGAKDLPSREDGRP---------------RNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHR 84 (141)
T ss_dssp TTEEEEEEEEEESCCCCSSSCC---------------CCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCT
T ss_pred CCEEEEEEEEccCCCCcCCCCC---------------CCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCH
Confidence 4689999999999999988776 8999999993 2334599999999999999999999532
Q ss_pred C---CceEEEEEEEccCCC---CcceeeEEEeceeeccCCcccceeeeccCCC
Q 001128 421 S---AAEVHFFVKDSDVVG---SELIGTVAIPVEQIYSGGKVEGTYPVLNGSG 467 (1148)
Q Consensus 421 ~---~~~L~~~V~D~D~~~---ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~G 467 (1148)
. ...|+|+|||+|..+ +++||++.|+|.++.... .+.||+|...+.
T Consensus 85 ~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~~~ 136 (141)
T 1v27_A 85 REFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQTHDS 136 (141)
T ss_dssp TGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCCSS
T ss_pred HHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECccccc
Confidence 2 378999999999865 899999999999987554 789999986543
No 29
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=99.63 E-value=3.7e-16 Score=157.07 Aligned_cols=108 Identities=15% Similarity=0.252 Sum_probs=90.4
Q ss_pred ceEEEEEEEEeeCCCCCC-CCCccccccccccCCCCCCCCcEEEEEECC----EEEEeeeeeeCCCCCeeceEEEEEecC
Q 001128 346 HGNLDIWIYSAKNLPNMD-MFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D-~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~RTkvi~nt~NPvWNE~F~f~v~~ 420 (1148)
.|.|.|+|++|++|+.+| ..+. +||||+|.+.. ....||++++++.||+|||+|.|.+..
T Consensus 22 ~~~L~V~v~~a~~L~~~d~~~~~---------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 86 (148)
T 3fdw_A 22 TQSLVVHVKECHQLAYADEAKKR---------------SNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPE 86 (148)
T ss_dssp TTEEEEEEEEEESCCCSBTTTTB---------------CCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCS
T ss_pred CCEEEEEEEEecCCCCcccCCCC---------------CCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeCh
Confidence 578999999999999887 4555 89999999963 124599999999999999999999865
Q ss_pred C---CceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeeccCCCC
Q 001128 421 S---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGK 468 (1148)
Q Consensus 421 ~---~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk 468 (1148)
. ...|.|+|||+|.. .+++||++.|+|.++..+...+.||+|..+.+.
T Consensus 87 ~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~~ 138 (148)
T 3fdw_A 87 SLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISA 138 (148)
T ss_dssp TTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC---
T ss_pred hHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcCcccc
Confidence 4 35699999999985 488999999999999987778899999765444
No 30
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}
Probab=99.63 E-value=4.5e-16 Score=160.76 Aligned_cols=106 Identities=20% Similarity=0.285 Sum_probs=92.1
Q ss_pred eceEEEEEEEEeeCCCCCCC-CCccccccccccCCCCCCCCcEEEEEECC--E--EEEeeeeeeCCCCCeeceEEEEEec
Q 001128 345 LHGNLDIWIYSAKNLPNMDM-FHKTLGGMFNSQMNTKITSDPYVTIAVAG--A--VVGRTFVISNSEDPVWQQHFYVPVA 419 (1148)
Q Consensus 345 l~GtL~VtV~eAk~L~~~D~-~g~~~~~~~~k~~~~~~~sDPYV~V~l~g--~--~~~RTkvi~nt~NPvWNE~F~f~v~ 419 (1148)
..|.|.|+|++|++|+.+|. .+. +||||+|.+.. . ..+||++++++.||+|||+|.|.+.
T Consensus 28 ~~~~L~V~v~~a~~L~~~d~~~g~---------------~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~ 92 (171)
T 2q3x_A 28 KKGQLEVEVIRARSLTQKPGSKST---------------PAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDES 92 (171)
T ss_dssp ETTEEEEEEEEEESCCCCC---CC---------------CEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSC
T ss_pred CCCEEEEEEEEeeCCCCCCcCCCC---------------CCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEec
Confidence 57899999999999999885 455 89999999863 2 3569999999999999999999987
Q ss_pred CCCceEEEEEE-EccCC-CCcceeeEEEeceeeccCCcccceeeeccC
Q 001128 420 HSAAEVHFFVK-DSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNG 465 (1148)
Q Consensus 420 ~~~~~L~~~V~-D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~ 465 (1148)
.....|.|+|| |+|.. .+++||++.|+|.++..+...+.||+|...
T Consensus 93 ~~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 93 PQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp CTTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred CCCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 66789999999 99985 578999999999999988788999999754
No 31
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}
Probab=99.63 E-value=2.7e-16 Score=160.31 Aligned_cols=103 Identities=20% Similarity=0.272 Sum_probs=89.2
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC---E--EEEeeeeeeCCCCCeeceEEEEEecC
Q 001128 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG---A--VVGRTFVISNSEDPVWQQHFYVPVAH 420 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g---~--~~~RTkvi~nt~NPvWNE~F~f~v~~ 420 (1148)
.|.|.|+|++|++|+.+|..+. +||||+|.+.. . ...||+++++|+||+|||+|.|.+..
T Consensus 42 ~~~L~V~Vi~a~~L~~~d~~g~---------------sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~ 106 (155)
T 2z0u_A 42 NKQFAILIIQLSNLSALLQQQD---------------QKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSY 106 (155)
T ss_dssp TTEEEEEEEEEECGGGTCCSCC---------------SEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCH
T ss_pred CCEEEEEEEEccCcCCcccCCC---------------CCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCH
Confidence 4689999999999999998776 89999999964 2 24699999999999999999999864
Q ss_pred C---CceEEEEEEEccCC-CCcceeeEEEeceeec-cCCcccceeeec
Q 001128 421 S---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIY-SGGKVEGTYPVL 463 (1148)
Q Consensus 421 ~---~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~-~G~~~d~W~pL~ 463 (1148)
. ...|+|+|||+|.. ++++||++.|++.+|. .+...+.||+|.
T Consensus 107 ~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 107 PALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp HHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred HHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 3 36899999999985 5899999999999996 466778999985
No 32
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=99.63 E-value=8.3e-16 Score=151.71 Aligned_cols=105 Identities=25% Similarity=0.377 Sum_probs=91.0
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC----CEEEEeeeeeeCCCCCeeceEEEEEecC
Q 001128 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA----GAVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1148)
Q Consensus 345 l~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~----g~~~~RTkvi~nt~NPvWNE~F~f~v~~ 420 (1148)
..|.|.|+|++|++|+.+|..+. +||||+|.+. +....||++++++.||+|||+|.|.+..
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~---------------~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~ 78 (137)
T 3rdl_A 14 TDEKLHVTVRDAKNLIPMDPNGL---------------SDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKP 78 (137)
T ss_dssp ETTEEEEEEEEEESCCCCSTTSC---------------CCEEEEEEEECCTTCCCCEECCCCCSCSSCEEEEEEEEECCG
T ss_pred cCCEEEEEEEEeeCCCCCCCCCC---------------CCeeEEEEEEcCCCCCeeecCceEcCCCCCCcccEEEEEcCc
Confidence 56899999999999999888776 8999999993 2334599999999999999999999864
Q ss_pred C--CceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeeccC
Q 001128 421 S--AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNG 465 (1148)
Q Consensus 421 ~--~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~ 465 (1148)
. ...|.|+|||+|.. .+++||++.|+|.+|..+. .++||+|.+.
T Consensus 79 ~~~~~~l~i~v~d~d~~~~~~~iG~~~i~l~~l~~~~-~~~W~~L~~~ 125 (137)
T 3rdl_A 79 SDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMP-ASGWYKLLNQ 125 (137)
T ss_dssp GGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHSC-EEEEEECBCH
T ss_pred hhcCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCc-cCceEECcCc
Confidence 3 35799999999986 5889999999999998765 7899999764
No 33
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.63 E-value=1.3e-15 Score=151.55 Aligned_cols=102 Identities=15% Similarity=0.172 Sum_probs=87.2
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE---CCEEEEeeeeeeCCCCCeeceEEEEEecCC-
Q 001128 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV---AGAVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l---~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~- 421 (1148)
.|.|.|+|++|+ ++|..+. +||||+|.+ ++....||+|+++++||+|||+|.|.+...
T Consensus 25 ~~~L~V~v~~a~---~~d~~g~---------------sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~ 86 (138)
T 1wfm_A 25 KAELFVTRLEAV---TSNHDGG---------------CDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEE 86 (138)
T ss_dssp TTEEEEEEEEEE---CCCCSSC---------------CCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTS
T ss_pred CCEEEEEEEEEE---cCCCCCC---------------cceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHH
Confidence 468999999999 3676665 899999999 344456999999999999999999998654
Q ss_pred --CceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeeccC
Q 001128 422 --AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNG 465 (1148)
Q Consensus 422 --~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~ 465 (1148)
...|+|+|||+|.. .+++||++.|+|.++..+...+.|++|...
T Consensus 87 l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~ 133 (138)
T 1wfm_A 87 LPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS 133 (138)
T ss_dssp STTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred cCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCcccccceeeCcCC
Confidence 36899999999985 589999999999999877778899999754
No 34
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=99.62 E-value=1.3e-15 Score=161.19 Aligned_cols=132 Identities=17% Similarity=0.202 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHHhhhcCCcEEEEEecCCCccccccccccccccc
Q 001128 545 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQT 624 (1148)
Q Consensus 545 ~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILVwD~~~s~~~~g~k~~g~m~t 624 (1148)
++|.+|+++|++||++|+|+.|.|. + ..|.++|++||+|||+||||+ |......
T Consensus 46 ~~~~~ll~~I~~A~~sI~i~~y~~~-------~------~~i~~aL~~aa~rGV~Vrii~-D~~~~~~------------ 99 (196)
T 4ggj_A 46 SSLSRLLRALLAARSSLELCLFAFS-------S------PQLGRAVQLLHQRGVRVRVIT-DCDYMAL------------ 99 (196)
T ss_dssp CHHHHHHHHHHTCSSEEEEEESCBC-------C------HHHHHHHHHHHHTTCEEEEEE-SSCCC--------------
T ss_pred HHHHHHHHHHHHhheEEEEEEEEeC-------C------HHHHHHHHHHHHcCCcEEEEE-ecccccc------------
Confidence 5799999999999999999998662 1 579999999999999999997 7532110
Q ss_pred ccHHHHHHhhcCCcEEEEccCcccccccccccccccccccccceEEEEcCCCCCCCccEEEEECCccCCCCCCCCCCCCc
Q 001128 625 HDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPL 704 (1148)
Q Consensus 625 ~~~et~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~H~l 704 (1148)
.......|...||+|+.... ....|+|++|||++ ++|+||.|++...+.
T Consensus 100 -~~~~~~~l~~~gi~v~~~~~----------------~~~~H~K~~viD~~--------~~~~GS~N~t~~~~~------ 148 (196)
T 4ggj_A 100 -NGSQIGLLRKAGIQVRHDQD----------------LGYMHHKFAIVDKK--------VLITGSLNWTTQAIQ------ 148 (196)
T ss_dssp --CCHHHHHHHTTCEEEECCS----------------SSCCCCEEEEETTT--------EEEEESCCBCHHHHH------
T ss_pred -cHHHHHHHHhcCCCcccccc----------------cccccCcEEEEcce--------EEEecCccCChhhhc------
Confidence 01134557788999876532 13579999999996 999999998774321
Q ss_pred ccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEc-CHHHHHHHHHHHHHHHhhc
Q 001128 705 FRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKID-GPAAYDVLTNFEERWRKAS 760 (1148)
Q Consensus 705 ~d~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~-GPaa~Dl~~~F~qrWn~~t 760 (1148)
..| +..+.+. +++|..+.+.|++.|+...
T Consensus 149 --------------------------~n~-E~~~~i~~~~~~~~~~~~F~~~W~~~~ 178 (196)
T 4ggj_A 149 --------------------------NNR-ENVLIMEDTEYVRLFLEEFERIWEEFD 178 (196)
T ss_dssp --------------------------HCC-EEEEEECCHHHHHHHHHHHHHHHHHTC
T ss_pred --------------------------ccc-eeEEEEECHHHHHHHHHHHHHHHHhCC
Confidence 122 3444455 5579999999999999754
No 35
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.62 E-value=1.9e-15 Score=167.34 Aligned_cols=128 Identities=23% Similarity=0.311 Sum_probs=107.7
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC--EEEEeeeeeeCCCCCeeceEEEEEecCC-
Q 001128 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1148)
Q Consensus 345 l~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g--~~~~RTkvi~nt~NPvWNE~F~f~v~~~- 421 (1148)
..|.|.|+|++|++|+.+|..+. +||||+|.+.. ....||++++++.||+|||+|.|.+...
T Consensus 17 ~~~~L~v~v~~a~~L~~~d~~~~---------------~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~ 81 (284)
T 2r83_A 17 QNNQLLVGIIQAAELPALDMGGT---------------SDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSE 81 (284)
T ss_dssp TTTEEEEEEEEEECCCCCSSSSS---------------CCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGG
T ss_pred CCCEEEEEEEEeeCCCCCCCCCC---------------CCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHH
Confidence 45789999999999999988776 89999999953 2345999999999999999999998643
Q ss_pred --CceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEEEecccc
Q 001128 422 --AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMER 487 (1148)
Q Consensus 422 --~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~p~~~ 487 (1148)
...|+|+|||+|.. .+++||++.|+|.+|..+...+.|++|....+......|+|.+.++|.|...
T Consensus 82 ~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~~~ 150 (284)
T 2r83_A 82 LAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAG 150 (284)
T ss_dssp CTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEETTTT
T ss_pred hCcCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEecCcCC
Confidence 37899999999985 5899999999999999888888999998765433345579999999987543
No 36
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=9.8e-16 Score=152.60 Aligned_cols=106 Identities=23% Similarity=0.261 Sum_probs=88.8
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC--E--EEEeeeeeeCCCCCeeceEEEEEecCC
Q 001128 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--A--VVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g--~--~~~RTkvi~nt~NPvWNE~F~f~v~~~ 421 (1148)
.|.|.|+|++|++|+.+|..+ +||||+|.+.. . ...||++++++.||+|||+|.|.+...
T Consensus 23 ~~~L~v~v~~a~~L~~~d~~g----------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 86 (142)
T 2dmg_A 23 RNKLIVVVHACRNLIAFSEDG----------------SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLP 86 (142)
T ss_dssp TTEEEEEEEEEECCCCSSTTC----------------CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHH
T ss_pred CCEEEEEEEEeECCCCCCCCC----------------CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHH
Confidence 568999999999999887543 69999999942 2 345999999999999999999998543
Q ss_pred ---CceEEEEEEEccCCC---CcceeeEEEeceeeccCCcccceeeeccCCC
Q 001128 422 ---AAEVHFFVKDSDVVG---SELIGTVAIPVEQIYSGGKVEGTYPVLNGSG 467 (1148)
Q Consensus 422 ---~~~L~~~V~D~D~~~---ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~G 467 (1148)
...|.|+|||+|..+ +++||++.|+|.++..+...+.|++|....+
T Consensus 87 ~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~~ 138 (142)
T 2dmg_A 87 EVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSG 138 (142)
T ss_dssp HHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSCS
T ss_pred HhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCCCC
Confidence 258999999999754 4699999999999987777889999986543
No 37
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=99.60 E-value=1.4e-15 Score=151.48 Aligned_cols=105 Identities=24% Similarity=0.344 Sum_probs=90.2
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEeeeeeeCCCCCeeceEEEEE-ec
Q 001128 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVP-VA 419 (1148)
Q Consensus 345 l~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~RTkvi~nt~NPvWNE~F~f~-v~ 419 (1148)
..|.|.|+|++|++|+.+|..+. +||||+|.+.+ ....||++++++.||+|||+|.|. +.
T Consensus 27 ~~~~L~V~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~ 91 (142)
T 2chd_A 27 DNSNLQCTIIRAKGLKPMDSNGL---------------ADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGIT 91 (142)
T ss_dssp GGTEEEEEEEEEESCCCCCTTSC---------------CCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCC
T ss_pred CCCEEEEEEEEecCCCCCCCCCC---------------CCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccC
Confidence 45789999999999999987776 89999999975 234599999999999999999998 54
Q ss_pred CC---CceEEEEEEEccCCC-CcceeeEEEeceeeccCCcccceeeecc
Q 001128 420 HS---AAEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVLN 464 (1148)
Q Consensus 420 ~~---~~~L~~~V~D~D~~~-ddfIG~v~IpL~eL~~G~~~d~W~pL~~ 464 (1148)
.. ...|+|+|||+|..+ +++||++.|++.+|..+...+.|++|..
T Consensus 92 ~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 140 (142)
T 2chd_A 92 EEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER 140 (142)
T ss_dssp HHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred HHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence 32 268999999999864 7899999999999998887888998853
No 38
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Probab=99.60 E-value=1.5e-15 Score=153.36 Aligned_cols=108 Identities=22% Similarity=0.330 Sum_probs=86.3
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEE--EEeeeeeeCCCCCeeceEEEEEecC
Q 001128 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAV--VGRTFVISNSEDPVWQQHFYVPVAH 420 (1148)
Q Consensus 345 l~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l--~g~~--~~RTkvi~nt~NPvWNE~F~f~v~~ 420 (1148)
..|.|.|+|++|++|+.+|..+. +||||+|.+ ++.. ..||++++++.||+|||+|.|.+..
T Consensus 28 ~~~~L~v~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 92 (153)
T 1w15_A 28 TTNTLTVVVLKARHLPKSDVSGL---------------SDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPC 92 (153)
T ss_dssp TTTEEEEEEEEEESCC------C---------------CCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCS
T ss_pred CCCEEEEEEEEeECCCCcCCCCC---------------CCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCH
Confidence 35789999999999999887776 899999999 5543 4599999999999999999999865
Q ss_pred CC---ceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeeccCCCCC
Q 001128 421 SA---AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKP 469 (1148)
Q Consensus 421 ~~---~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~ 469 (1148)
.. ..|+|+|||+|.. .+++||++.|++.+ .+...+.|++|++..+++
T Consensus 93 ~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~p~~~ 143 (153)
T 1w15_A 93 ESLEEISVEFLVLDSERGSRNEVIGRLVLGATA--EGSGGGHWKEICDFPRRQ 143 (153)
T ss_dssp SSSTTEEEEEEEEECCTTSCCEEEEEEEESTTC--CSHHHHHHHHHHHSTTCC
T ss_pred HHhCceEEEEEEEeCCCCCCCcEEEEEEECCCC--CchHHHHHHHHHhCCCCe
Confidence 42 6799999999985 58899999999988 355567899998765553
No 39
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}
Probab=99.59 E-value=9.2e-16 Score=151.41 Aligned_cols=107 Identities=21% Similarity=0.323 Sum_probs=91.0
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEeeeeeeCCCCCeeceEEEEEecCC
Q 001128 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~RTkvi~nt~NPvWNE~F~f~v~~~ 421 (1148)
.|.|.|+|++|++|+.+|..+. +||||+|.+.+ ....||++++++.||+|||+|.|.+...
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~ 79 (138)
T 3n5a_A 15 ANSIIVNIIKARNLKAMDIGGT---------------SDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTE 79 (138)
T ss_dssp TTEEEEEEEEEESCCCCBTTTB---------------CCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGG
T ss_pred CCeEEEEEEEeeCCCCcCCCCC---------------cCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChh
Confidence 4789999999999999888776 89999999964 2446999999999999999999998654
Q ss_pred C---ceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeeccCCCCC
Q 001128 422 A---AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKP 469 (1148)
Q Consensus 422 ~---~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~ 469 (1148)
. ..|.|+|||+|.. .+++||++.|++.++. ...+.|++|+...+++
T Consensus 80 ~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~--~~~~~W~~l~~~~~~~ 129 (138)
T 3n5a_A 80 KLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGP--GEVKHWKDMIARPRQP 129 (138)
T ss_dssp GGGGEEEEEEEEECCSSSCCEEEEEEEESSSSCH--HHHHHHHHHHHSTTCC
T ss_pred hcCceEEEEEEEECCCCCCCcEEEEEEEccccCC--hHHHHHHHHHhCCCCe
Confidence 3 6799999999985 5889999999999754 3457899998777764
No 40
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.59 E-value=4e-15 Score=147.61 Aligned_cols=105 Identities=24% Similarity=0.365 Sum_probs=87.5
Q ss_pred eceEEEEEEEEeeCCCCCCCC-CccccccccccCCCCCCCCcEEEEEECC--EEEEeeeeeeCCCCCeeceEEEEE-ecC
Q 001128 345 LHGNLDIWIYSAKNLPNMDMF-HKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVP-VAH 420 (1148)
Q Consensus 345 l~GtL~VtV~eAk~L~~~D~~-g~~~~~~~~k~~~~~~~sDPYV~V~l~g--~~~~RTkvi~nt~NPvWNE~F~f~-v~~ 420 (1148)
..|.|.|+|++|++|+.+|.+ +. +||||+|.+.. ....||++++++.||+|||+|.|. +..
T Consensus 20 ~~~~L~v~v~~a~~L~~~d~~~~~---------------~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~ 84 (138)
T 1ugk_A 20 ERKAFVVNIKEARGLPAMDEQSMT---------------SDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPY 84 (138)
T ss_dssp GGTEEEEEEEEEESCCCCBTTTTB---------------CEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCS
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCC---------------CCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCH
Confidence 357899999999999998875 55 89999999953 344699999999999999999996 543
Q ss_pred C---CceEEEEEEEccCC-CCcceeeEEEeceeeccCC-cccceeeecc
Q 001128 421 S---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGG-KVEGTYPVLN 464 (1148)
Q Consensus 421 ~---~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~-~~d~W~pL~~ 464 (1148)
. ...|.|+|||+|.. .+++||++.|+|.+|..+. ....|++|..
T Consensus 85 ~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~ 133 (138)
T 1ugk_A 85 TQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133 (138)
T ss_dssp TTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred HHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence 2 36899999999985 5889999999999998764 3456788864
No 41
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Probab=99.58 E-value=1.8e-15 Score=155.08 Aligned_cols=106 Identities=22% Similarity=0.341 Sum_probs=90.3
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEeeeeeeCCCCCeeceEEEEEecCC
Q 001128 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~RTkvi~nt~NPvWNE~F~f~v~~~ 421 (1148)
.|.|.|+|++|++|+.+|..+. +||||+|.+.+ ....||++++++.||+|||+|.|.+...
T Consensus 36 ~~~L~V~v~~a~~L~~~d~~g~---------------~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 100 (166)
T 2cm5_A 36 QGGLIVGIIRCVHLAAMDANGY---------------SDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHS 100 (166)
T ss_dssp TTEEEEEEEEEESCCCCSTTSC---------------CCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGG
T ss_pred CCEEEEEEEEeECCCCccCCCC---------------CCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchH
Confidence 5789999999999999988776 89999999975 2446999999999999999999998653
Q ss_pred ---CceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeeccCCCC
Q 001128 422 ---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGK 468 (1148)
Q Consensus 422 ---~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk 468 (1148)
...|.|+|||+|.. .+++||++.|++.++. ...+.|++|+...++
T Consensus 101 ~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~--~~~~~W~~l~~~~~~ 149 (166)
T 2cm5_A 101 DLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG--ERLKHWYECLKNKDK 149 (166)
T ss_dssp GGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCH--HHHHHHHHHHHCTTC
T ss_pred hcCCCEEEEEEEECCCCCCCcEEEeEEEecccCC--chhHHHHHHHhCCCC
Confidence 35899999999986 4889999999999874 345689988876555
No 42
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*
Probab=99.57 E-value=7.1e-15 Score=149.43 Aligned_cols=91 Identities=30% Similarity=0.399 Sum_probs=78.8
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC--E--EEEeeeeeeCCCCCeeceEEEEEecC
Q 001128 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--A--VVGRTFVISNSEDPVWQQHFYVPVAH 420 (1148)
Q Consensus 345 l~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g--~--~~~RTkvi~nt~NPvWNE~F~f~v~~ 420 (1148)
..|.|.|+|++|++|+.+|..+. +||||+|.+.. . ...||++++++.||+|||+|.|.+..
T Consensus 23 ~~~~L~V~v~~a~~L~~~d~~g~---------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 87 (159)
T 1tjx_A 23 TAGKLTVVILEAKNLKKMDVGGL---------------SDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPF 87 (159)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSC---------------CCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCG
T ss_pred CCCEEEEEEEEeeCCCCccCCCC---------------CCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCH
Confidence 35789999999999999988776 89999999952 2 34699999999999999999999865
Q ss_pred C---CceEEEEEEEccCC-CCcceeeEEEeceee
Q 001128 421 S---AAEVHFFVKDSDVV-GSELIGTVAIPVEQI 450 (1148)
Q Consensus 421 ~---~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL 450 (1148)
. ...|.|+|||+|.. .+++||++.|++..+
T Consensus 88 ~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~ 121 (159)
T 1tjx_A 88 EQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 121 (159)
T ss_dssp GGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred HHhCCcEEEEEEEECCCCCCCceEEEEEECCCCC
Confidence 4 35799999999985 589999999999865
No 43
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.57 E-value=8.1e-15 Score=145.17 Aligned_cols=115 Identities=20% Similarity=0.298 Sum_probs=80.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeee-CCCCCeeceEEEEEecCCCceE
Q 001128 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVIS-NSEDPVWQQHFYVPVAHSAAEV 425 (1148)
Q Consensus 347 GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~-nt~NPvWNE~F~f~v~~~~~~L 425 (1148)
|.|.|+|++|++|.. .+. +||||+|.. +.. ||+++. ++.||+|||+|.|.+......|
T Consensus 5 ~~L~V~V~~A~~l~~---~g~---------------~DPYv~v~~--~~~-kt~~~~~~t~nP~WnE~f~f~v~~~~~~L 63 (131)
T 2cjt_A 5 SLLCVGVKKAKFDGA---QEK---------------FNTYVTLKV--QNV-KSTTIAVRGSQPSWEQDFMFEINRLDLGL 63 (131)
T ss_dssp EEEEEEEEEEECSSC---GGG---------------CEEEEEEEE--TTE-EEECCCEESSSCEEEEEEEEEECCCSSEE
T ss_pred eEEEEEEEEeECCCC---CCC---------------cCeEEEEEe--cCE-EEeEecCCCCCceECCEEEEEEeCCCCeE
Confidence 789999999998852 344 899999992 222 555554 6999999999999998777889
Q ss_pred EEEEEEccCCCCcceeeEEEeceeeccCCc------ccceeeeccCCCCCC----CCCCcEEEEEEE
Q 001128 426 HFFVKDSDVVGSELIGTVAIPVEQIYSGGK------VEGTYPVLNGSGKPC----KPGATLTLSIQY 482 (1148)
Q Consensus 426 ~~~V~D~D~~~ddfIG~v~IpL~eL~~G~~------~d~W~pL~~~~Gk~~----~~~g~L~L~l~f 482 (1148)
.|+|||+|..+|++||++.|+|++|..... ...|+.+..++|+.+ ...+.+.+.++|
T Consensus 64 ~~~V~D~d~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~p~~~~~~~~~~~ 130 (131)
T 2cjt_A 64 TVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF 130 (131)
T ss_dssp EEEEEECCSSCEEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred EEEEEECCCCCCCeEEEEEEEHHHhhhcCCCCccccEEcccccccCCCcCcceECCCccEEEEEEEe
Confidence 999999996678999999999999874321 112344443444432 233457777776
No 44
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=4.2e-15 Score=149.00 Aligned_cols=110 Identities=19% Similarity=0.258 Sum_probs=87.8
Q ss_pred ceEEEEEEEEeeCCCC-CCCCCccccccccccCCCCCCCCcEEEEEECC--EEEEeeeeeeCCCCCeeceEEEEEecCC-
Q 001128 346 HGNLDIWIYSAKNLPN-MDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~-~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g--~~~~RTkvi~nt~NPvWNE~F~f~v~~~- 421 (1148)
.|.|.|+|++|++|+. +|..+. ++. ...+||||+|.+.. ....||++++++.||+|||+|.|.+...
T Consensus 25 ~~~L~V~v~~a~~L~~~~d~~g~--~~~-------~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~ 95 (147)
T 2enp_A 25 HNHLTVRVIEARDLPPPISHDGS--RQD-------MAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLE 95 (147)
T ss_dssp TTEEEEEEEEEECCCCSCSSCCS--SCT-------TCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHH
T ss_pred CCEEEEEEEEEeCCCCccccccc--ccc-------CCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHH
Confidence 5789999999999998 355431 000 11389999999963 2345999999999999999999998643
Q ss_pred --CceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeecc
Q 001128 422 --AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLN 464 (1148)
Q Consensus 422 --~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~ 464 (1148)
...|+|+|||+|.. .+++||++.|+|.+|..+...+.|++|..
T Consensus 96 l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~ 141 (147)
T 2enp_A 96 AQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIP 141 (147)
T ss_dssp HHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBC
T ss_pred hccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeec
Confidence 35899999999985 58899999999999987766778999963
No 45
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=99.52 E-value=6.2e-14 Score=141.32 Aligned_cols=134 Identities=17% Similarity=0.236 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHHhhhcCCcEEEEEecCCCccccccccccccccc
Q 001128 545 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQT 624 (1148)
Q Consensus 545 ~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILVwD~~~s~~~~g~k~~g~m~t 624 (1148)
..++.+.++|++|+++|+|+.|.|. ...|.++|.++++|||+||||+ |...... .
T Consensus 14 ~~~~~~~~~i~~A~~~I~i~~~~~~-------------~~~i~~aL~~a~~rGV~Vril~-~~~~~~~-----------~ 68 (155)
T 1byr_A 14 SARVLVLSAIDSAKTSIRMMAYSFT-------------APDIMKALVAAKKRGVDVKIVI-DERGNTG-----------R 68 (155)
T ss_dssp HHHHHHHHHHHHCSSEEEEEESSBC-------------CHHHHHHHHHHHHTTCEEEEEE-ESTTCCS-----------H
T ss_pred cHHHHHHHHHHHHhhEEEEEEEEeC-------------CHHHHHHHHHHHHCCCEEEEEE-eCccccc-----------c
Confidence 5689999999999999999998652 1578999999999999999997 5433210 0
Q ss_pred ccHHHHHHhhcCCcEEEEccCcccccccccccccccccccccceEEEEcCCCCCCCccEEEEECCccCCCCCCCCCCCCc
Q 001128 625 HDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPL 704 (1148)
Q Consensus 625 ~~~et~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~H~l 704 (1148)
......+.|.+.|++++.+.. ...+|.|++|||++ ++++||.|++...+
T Consensus 69 ~~~~~~~~L~~~gv~v~~~~~----------------~~~~H~K~~iiD~~--------~~~iGS~N~~~~~~------- 117 (155)
T 1byr_A 69 ASIAAMNYIANSGIPLRTDSN----------------FPIQHDKVIIVDNV--------TVETGSFNFTKAAE------- 117 (155)
T ss_dssp HHHHHHHHHHHTTCCEEEECS----------------SSCCCCCEEEETTT--------EEEEESCCBSHHHH-------
T ss_pred ccHHHHHHHHHCCCeEEEcCC----------------cccccceEEEECCC--------EEEEECCCCCcccc-------
Confidence 012344556778999887532 12589999999996 99999999986311
Q ss_pred ccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcC-H-HHHHHHHHHHHHHHhhc
Q 001128 705 FRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDG-P-AAYDVLTNFEERWRKAS 760 (1148)
Q Consensus 705 ~d~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~G-P-aa~Dl~~~F~qrWn~~t 760 (1148)
..|++..+.|+| | .+.++...|.+.|+.+.
T Consensus 118 --------------------------~~n~E~~~~i~~~~~l~~~~~~~f~~~w~~~~ 149 (155)
T 1byr_A 118 --------------------------TKNSENAVVIWNMPKLAESFLEHWQDRWNQGR 149 (155)
T ss_dssp --------------------------HTSCEEEEEEESCHHHHHHHHHHHHHHHHTCE
T ss_pred --------------------------ccCcccEEEEcCcHHHHHHHHHHHHHHHHhCC
Confidence 235789999999 3 79999999999998653
No 46
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}
Probab=99.52 E-value=3.7e-14 Score=141.12 Aligned_cols=116 Identities=16% Similarity=0.310 Sum_probs=103.1
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeee-CCCCCeeceEEEEEecCC---Cc
Q 001128 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVIS-NSEDPVWQQHFYVPVAHS---AA 423 (1148)
Q Consensus 348 tL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~-nt~NPvWNE~F~f~v~~~---~~ 423 (1148)
.|+|+|.+|.+|+ ++ +|||++|.+.+.+. |||+++ ++.||+|||.|.|++..+ .+
T Consensus 22 sL~V~l~~a~~Lp-----g~---------------~Dp~akv~FRg~k~-kTkvi~~~~~npvfnE~F~wpl~~~ld~~e 80 (144)
T 3l9b_A 22 ALIVHLKTVSELR-----GR---------------ADRIAKVTFRGQSF-YSRVLENCEDVADFDETFRWPVASSIDRNE 80 (144)
T ss_dssp EEEEEEEEEESCC-----SC---------------EEEEEEEEETTEEE-ECCCEEEECSCEEEEEEEEEEESSCCCTTC
T ss_pred EEEEEEEEecCCC-----CC---------------CCCeEEEEEeccce-eeEEeccCCCCceEcceEEecCCCCCCCCC
Confidence 3999999999999 33 89999999998885 999998 699999999999998654 47
Q ss_pred eEEEEEEEccC-CCCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEEEeccc
Q 001128 424 EVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPME 486 (1148)
Q Consensus 424 ~L~~~V~D~D~-~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~p~~ 486 (1148)
.|.|.|+|++. .++++||++.|+|.++..+.....+.+|+|.++++.+ +.|.|.|+|.|..
T Consensus 81 ~L~v~V~d~~~v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~--a~I~l~l~Y~pp~ 142 (144)
T 3l9b_A 81 VLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIK--TSLSMEVRYQAAD 142 (144)
T ss_dssp EEEEEEEEECTTSCCEEEEEEEEESHHHHHHSEEEEEEEEECTTSCEEE--EEEEEEEEEEETT
T ss_pred EEEEEEEECccccCCCEEEEEEEEhHHhccCCeEEEeecccCCCCCccc--cEEEEEEEecCCC
Confidence 89999999998 4688999999999999987777788999999999765 7999999999864
No 47
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=99.50 E-value=6.1e-14 Score=141.38 Aligned_cols=119 Identities=19% Similarity=0.150 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHhhccEEEEEEeEeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCcch
Q 001128 840 SIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAAT 919 (1148)
Q Consensus 840 sI~~Ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p~~~s~ 919 (1148)
++.++++++|++|+++|+|+++||. + ..+..+|.+|. +|||+|+||++.....
T Consensus 14 ~~~~~~~~~i~~A~~~I~i~~~~~~-~-----------------~~i~~aL~~a~--~rGV~Vril~~~~~~~------- 66 (155)
T 1byr_A 14 SARVLVLSAIDSAKTSIRMMAYSFT-A-----------------PDIMKALVAAK--KRGVDVKIVIDERGNT------- 66 (155)
T ss_dssp HHHHHHHHHHHHCSSEEEEEESSBC-C-----------------HHHHHHHHHHH--HTTCEEEEEEESTTCC-------
T ss_pred cHHHHHHHHHHHHhhEEEEEEEEeC-C-----------------HHHHHHHHHHH--HCCCEEEEEEeCcccc-------
Confidence 6889999999999999999998883 2 24666777664 5899999999975320
Q ss_pred hHHHHHHHHhHhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCCcceeee
Q 001128 920 QRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVH 999 (1148)
Q Consensus 920 ~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~L~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~IYVH 999 (1148)
.+ .....++.|++.|+++++.. . ...+|
T Consensus 67 ----~~-------~~~~~~~~L~~~gv~v~~~~------------------~-----------------------~~~~H 94 (155)
T 1byr_A 67 ----GR-------ASIAAMNYIANSGIPLRTDS------------------N-----------------------FPIQH 94 (155)
T ss_dssp ----SH-------HHHHHHHHHHHTTCCEEEEC------------------S-----------------------SSCCC
T ss_pred ----cc-------ccHHHHHHHHHCCCeEEEcC------------------C-----------------------ccccc
Confidence 01 11246778889999876410 0 12589
Q ss_pred eEEEEEeCeEEEEcccccccccCCCCCCcceEEEEeCc-ch
Q 001128 1000 SKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQP-EY 1039 (1148)
Q Consensus 1000 SKlmIVDD~~viIGSANLN~RSm~G~~DsEiav~i~dp-~~ 1039 (1148)
+|+|||||++++|||+||+.||+. .|.|+++.+.++ +.
T Consensus 95 ~K~~iiD~~~~~iGS~N~~~~~~~--~n~E~~~~i~~~~~l 133 (155)
T 1byr_A 95 DKVIIVDNVTVETGSFNFTKAAET--KNSENAVVIWNMPKL 133 (155)
T ss_dssp CCEEEETTTEEEEESCCBSHHHHH--TSCEEEEEEESCHHH
T ss_pred ceEEEECCCEEEEECCCCCccccc--cCcccEEEEcCcHHH
Confidence 999999999999999999999997 799999999984 54
No 48
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.48 E-value=1e-13 Score=155.15 Aligned_cols=124 Identities=26% Similarity=0.330 Sum_probs=99.1
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEEEeeeeeeCCCCCeeceEEEEEecCC--
Q 001128 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVGRTFVISNSEDPVWQQHFYVPVAHS-- 421 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l--~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~-- 421 (1148)
.|.|.|+|++|++|+.+|..+. +||||+|.+ ++....||++++++.||+|||+|.|.+...
T Consensus 19 ~~~L~v~v~~a~~L~~~d~~g~---------------~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l 83 (296)
T 1dqv_A 19 SDQLVVRILQALDLPAKDSNGF---------------SDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAEL 83 (296)
T ss_dssp SCEEEEEEEEEECCCCCSTTSC---------------CCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGG
T ss_pred CCEEEEEEEEeECCCCcCCCCC---------------cCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHh
Confidence 4689999999999999998776 899999999 233345999999999999999999998543
Q ss_pred -CceEEEEEEEccCC-CCcceeeEEEe-ceeecc-CCcccceeeeccCCCCCCCCCCcEEEEEEEecc
Q 001128 422 -AAEVHFFVKDSDVV-GSELIGTVAIP-VEQIYS-GGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPM 485 (1148)
Q Consensus 422 -~~~L~~~V~D~D~~-~ddfIG~v~Ip-L~eL~~-G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~p~ 485 (1148)
...|+|+|||+|.. .+++||++.|+ +.++.. +...+.|++|....++. ...|+|++.+.|.|.
T Consensus 84 ~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~-~~~G~i~vsl~y~~~ 150 (296)
T 1dqv_A 84 AQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEK-ADLGELNFSLCYLPT 150 (296)
T ss_dssp SSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCC-SCCCEEEEEEEEETT
T ss_pred cCCEEEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeeccccccccc-cccceEEEEEEeccc
Confidence 25899999999985 58999999996 444443 34456899997654432 345799999998764
No 49
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.48 E-value=5.9e-14 Score=144.86 Aligned_cols=85 Identities=25% Similarity=0.337 Sum_probs=71.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeee-CCCCCeeceEEEEEecCCCceE
Q 001128 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVIS-NSEDPVWQQHFYVPVAHSAAEV 425 (1148)
Q Consensus 347 GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~-nt~NPvWNE~F~f~v~~~~~~L 425 (1148)
|.|.|+|++|++|. ..++ +||||+|.. +.. ||+++. ++.||+|||+|.|.+......|
T Consensus 14 ~~L~V~V~~A~~l~---~~g~---------------~DPYV~v~~--~~~-kt~~~~~~t~nP~WnE~f~f~v~~~~~~L 72 (167)
T 2cjs_A 14 SLLCVGVKKAKFDG---AQEK---------------FNTYVTLKV--QNV-ESTTIAVRGSQPSWEQDFMFEINRLDLGL 72 (167)
T ss_dssp CEEEEEEEEEECSS---CGGG---------------CEEEEEEEE--TTE-EEECCCEESSSCEEEEEEEEECCCTTSEE
T ss_pred EEEEEEEEEEECCC---CCCC---------------CCeEEEEEe--cce-EEEEecCCCCCCCCCCEEEEEeeCCCCEE
Confidence 56999999999884 2344 899999992 222 676665 6999999999999998877889
Q ss_pred EEEEEEccCCCCcceeeEEEeceeecc
Q 001128 426 HFFVKDSDVVGSELIGTVAIPVEQIYS 452 (1148)
Q Consensus 426 ~~~V~D~D~~~ddfIG~v~IpL~eL~~ 452 (1148)
.|+|||+|..+|++||++.|+|++|..
T Consensus 73 ~~~V~D~d~~~dd~iG~~~i~L~~l~~ 99 (167)
T 2cjs_A 73 TVEVWNKGLIWDTMVGTVWIPLRTIRQ 99 (167)
T ss_dssp EEEEEECCSSCCEEEEEEEEEGGGSCB
T ss_pred EEEEEECCCCCCceEEEEEEEHHHhcc
Confidence 999999996679999999999999864
No 50
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=99.47 E-value=1.4e-13 Score=164.74 Aligned_cols=115 Identities=18% Similarity=0.276 Sum_probs=98.2
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCC-ce
Q 001128 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA-AE 424 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~-~~ 424 (1148)
.|+|.|+|++|++|+.+|..|. +||||+|.+++.. .||+++++|.||+|||+|.|.+.... ..
T Consensus 386 ~~~l~v~v~~a~~L~~~d~~~~---------------sdpyv~v~~~~~~-~~T~~~~~t~nP~w~e~f~f~~~~~~~~~ 449 (510)
T 3jzy_A 386 IGRLMVHVIEATELKACKPNGK---------------SNPYCEISMGSQS-YTTRTIQDTLNPKWNFNCQFFIKDLYQDV 449 (510)
T ss_dssp CEEEEEEEEEEESCCCCSTTSC---------------CCEEEEEEETTEE-EECCCCSSCSSCEEEEEEEEEESCTTTCE
T ss_pred CceEEEEeceeecCCCCCCCCC---------------CCeEEEEEECCee-ccCCccCCCCCCccCceEEEEecCCCCCE
Confidence 4689999999999999998776 8999999998876 49999999999999999999997665 77
Q ss_pred EEEEEEEccCC-CCcceeeEEEeceeeccCCc----ccceeeeccCCCCCCCCCCcEEEEEEE
Q 001128 425 VHFFVKDSDVV-GSELIGTVAIPVEQIYSGGK----VEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1148)
Q Consensus 425 L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~----~d~W~pL~~~~Gk~~~~~g~L~L~l~f 482 (1148)
|+|+|||+|.. .+++||++.+++.+|..+.. .+.|++|.+. ..|+|+|.+.+
T Consensus 450 l~~~v~d~d~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~------~~G~i~l~~~l 506 (510)
T 3jzy_A 450 LCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV------PTGEVWVRFDL 506 (510)
T ss_dssp EEEEEEECCSSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS------SSCEEEEEEEE
T ss_pred EEEEEEeCCCCCCCCceEEEEEEHHHhccccCCCCceeeeecCCCC------CCceEEEEEEE
Confidence 99999999985 48999999999999987643 6789998532 23578777765
No 51
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}
Probab=99.47 E-value=4e-15 Score=177.76 Aligned_cols=124 Identities=22% Similarity=0.355 Sum_probs=23.3
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCC---CCCeeceEEEEEec
Q 001128 343 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNS---EDPVWQQHFYVPVA 419 (1148)
Q Consensus 343 ~Ll~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt---~NPvWNE~F~f~v~ 419 (1148)
.-..|.|+|+|++|++|+.+ .||||+|.+++...+||+++++| .||+|||+|.|.+.
T Consensus 7 ~r~~~~L~V~VieAk~L~~~--------------------ddpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~ 66 (483)
T 3bxj_A 7 RRVDNVLKLWIIEARELPPK--------------------KRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNL 66 (483)
T ss_dssp EEEEECC-----------------------------------------------------------------CCEECC--
T ss_pred ceeccEEEEEEEEcCCcCCC--------------------CCCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecC
Confidence 34568899999999999854 38999999999877899999999 99999999999976
Q ss_pred CCCceEEEEEEEc-c----CCCCcceeeEEEeceeeccCCcccceeeeccCCC---------------------CCCCCC
Q 001128 420 HSAAEVHFFVKDS-D----VVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSG---------------------KPCKPG 473 (1148)
Q Consensus 420 ~~~~~L~~~V~D~-D----~~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~G---------------------k~~~~~ 473 (1148)
.....|.|+|||. | ..+|++||++.|++++|..|...+.||+|.+.++ +..+..
T Consensus 67 ~~~~~L~v~V~d~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 146 (483)
T 3bxj_A 67 PAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGC 146 (483)
T ss_dssp ----------------------------------------CCEECC----------------------------------
T ss_pred CCccEEEEEEEecCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCC
Confidence 5568899999994 5 3678999999999999998888899999976543 112345
Q ss_pred CcEEEEEEEeccc
Q 001128 474 ATLTLSIQYTPME 486 (1148)
Q Consensus 474 g~L~L~l~f~p~~ 486 (1148)
|.|+|+++|.+..
T Consensus 147 G~lrL~v~~~~~~ 159 (483)
T 3bxj_A 147 PAVRLKARYQTMS 159 (483)
T ss_dssp ----CEEEEEECC
T ss_pred ceEEEEEEeeeee
Confidence 8999999998754
No 52
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=99.47 E-value=5.7e-14 Score=150.25 Aligned_cols=154 Identities=13% Similarity=0.104 Sum_probs=106.4
Q ss_pred ccchhHHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHHhhhcCCcEEEEEecCCCcccccccccc
Q 001128 540 SYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMD 619 (1148)
Q Consensus 540 ~y~~~~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILVwD~~~s~~~~g~k~~ 619 (1148)
.+...+.++.|+++|++||++|+|+.|.|. ...|.++|++||+|||+||||+ |...+....
T Consensus 53 ~~~~~~~~~~ii~~I~~A~~sI~i~~Y~~~-------------~~~I~~aL~~Aa~RGV~VRii~-D~~~~~~~~----- 113 (220)
T 4gel_A 53 THCSLRNVAKIVEQIDRAVYSIDLAIYTFT-------------SLFLADSIKRALQRGVIIRIIS-DGEMVYSKG----- 113 (220)
T ss_dssp TTCHHHHHHHHHHHHHTCSSEEEEECSCBC-------------CHHHHHHHHHHHHHTCEEEEEC-CTTTTTSTT-----
T ss_pred ccCcHHHHHHHHHHHHHhhhEEEEEEEEeC-------------CHHHHHHHHHHHHcCCeEEEEE-echhhhhhH-----
Confidence 345567899999999999999999998652 2579999999999999999996 865432110
Q ss_pred cccccccHHHHHHhhcCCcEEEEccCccccccccc--cc--ccccccccccceEEEEcCCCCCCCccEEEEECCccCCCC
Q 001128 620 GVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWA--KQ--KEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDG 695 (1148)
Q Consensus 620 g~m~t~~~et~~~l~~~gV~v~l~p~~~~~~~~~~--~~--~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dg 695 (1148)
.....+...++.+............++ .. ...+...+.|.|++|||++ ++++|+.|++..
T Consensus 114 --------~~~~~~~~~~~~~~~~~~~~~~h~K~~viD~~~~~~~~~~~~H~K~~v~D~~--------~v~~GS~N~t~~ 177 (220)
T 4gel_A 114 --------SQISMLAQLGVPVRVPITTNLMHNKFCIIDGFERVEEIRLLRKLKFMRPCYS--------IVISGSVNWTAL 177 (220)
T ss_dssp --------CHHHHHHHTTCCEEECCSSSCBCCCEEEESCHHHHHHHHHHTTCSCCCCCCC--------EEEEESCCBSHH
T ss_pred --------HHHHHHHhcCCcEEeecccccccceeEEEcchhcccccccccceeccccccc--------eEEecCcccccc
Confidence 112234445555544322111001110 00 0112345788888888885 999999997653
Q ss_pred CCCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCHHHHHHHHHHHHHHHhhc
Q 001128 696 RYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKAS 760 (1148)
Q Consensus 696 RwDt~~H~l~d~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GPaa~Dl~~~F~qrWn~~t 760 (1148)
-. ...|.|+.+...|++|.++.+.|.+.|+...
T Consensus 178 s~--------------------------------~~N~E~~~vi~~~~~a~~~~~~F~~~W~~~~ 210 (220)
T 4gel_A 178 GL--------------------------------GGNWENCIITADDKLTATFQAEFQRMWRAFA 210 (220)
T ss_dssp HH--------------------------------HTSBEEEEEECCHHHHHHHHHHHHHHHHHSE
T ss_pred cc--------------------------------ccCceEEEEEECHHHHHHHHHHHHHHHHhcc
Confidence 21 2468899998899999999999999999653
No 53
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=99.45 E-value=1.6e-13 Score=145.02 Aligned_cols=118 Identities=16% Similarity=0.159 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhhccEEEEEEeEeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCcch
Q 001128 840 SIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAAT 919 (1148)
Q Consensus 840 sI~~Ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p~~~s~ 919 (1148)
+...+++++|++||++|+|+. |++++ .+|+.+|.+| ++|||+|+||+...-.. .
T Consensus 46 ~~~~~ll~~I~~A~~sI~i~~-y~~~~-----------------~~i~~aL~~a--a~rGV~Vrii~D~~~~~----~-- 99 (196)
T 4ggj_A 46 SSLSRLLRALLAARSSLELCL-FAFSS-----------------PQLGRAVQLL--HQRGVRVRVITDCDYMA----L-- 99 (196)
T ss_dssp CHHHHHHHHHHTCSSEEEEEE-SCBCC-----------------HHHHHHHHHH--HHTTCEEEEEESSCCC--------
T ss_pred HHHHHHHHHHHHhheEEEEEE-EEeCC-----------------HHHHHHHHHH--HHcCCcEEEEEeccccc----c--
Confidence 456789999999999999998 44433 2577777776 46899999999642110 0
Q ss_pred hHHHHHHHHhHhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCCcceeee
Q 001128 920 QRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVH 999 (1148)
Q Consensus 920 ~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~L~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~IYVH 999 (1148)
..+.+..|.++|+++++.. ....+|
T Consensus 100 --------------~~~~~~~l~~~gi~v~~~~-----------------------------------------~~~~~H 124 (196)
T 4ggj_A 100 --------------NGSQIGLLRKAGIQVRHDQ-----------------------------------------DLGYMH 124 (196)
T ss_dssp ---------------CCHHHHHHHTTCEEEECC-----------------------------------------SSSCCC
T ss_pred --------------cHHHHHHHHhcCCCccccc-----------------------------------------cccccc
Confidence 0123567889999876410 012579
Q ss_pred eEEEEEeCeEEEEcccccccccCCCCCCcceEEEEeCcchh
Q 001128 1000 SKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1040 (1148)
Q Consensus 1000 SKlmIVDD~~viIGSANLN~RSm~G~~DsEiav~i~dp~~~ 1040 (1148)
+|+||||++++++||+||+.||+. .|.|..++++|++.+
T Consensus 125 ~K~~viD~~~~~~GS~N~t~~~~~--~n~E~~~~i~~~~~~ 163 (196)
T 4ggj_A 125 HKFAIVDKKVLITGSLNWTTQAIQ--NNRENVLIMEDTEYV 163 (196)
T ss_dssp CEEEEETTTEEEEESCCBCHHHHH--HCCEEEEEECCHHHH
T ss_pred CcEEEEcceEEEecCccCChhhhc--ccceeEEEEECHHHH
Confidence 999999999999999999999998 799999999988753
No 54
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=99.44 E-value=3.7e-13 Score=162.05 Aligned_cols=107 Identities=21% Similarity=0.264 Sum_probs=90.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecC--CCce
Q 001128 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAH--SAAE 424 (1148)
Q Consensus 347 GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~--~~~~ 424 (1148)
|.|+|+|++|++|+. |.+++ +||||+|.+++.+ .||+|+++++||+|||+|.|.+.. ....
T Consensus 394 ~~L~V~V~~A~~L~~-D~~g~---------------sDPYV~v~l~~~~-~kTkvik~tlNP~Wne~f~f~~~~~~~~~~ 456 (540)
T 3nsj_A 394 AHLVVSNFRAEHLWG-DYTTA---------------TDAYLKVFFGGQE-FRTGVVWNNNNPRWTDKMDFENVLLSTGGP 456 (540)
T ss_dssp EEEEEEEEEEESCCC-SSCSC---------------CCEEEEEEETTEE-EECCCBCSCSSCBCCCCEEEEEEETTTCCC
T ss_pred cEEEEEEEEccCCCc-ccCCC---------------cCeEEEEEECCEe-eeeeeecCCCCCCCCeEEEEEEecCCCCCE
Confidence 689999999999998 88876 8999999999977 699999999999999999998643 4588
Q ss_pred EEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEEEe
Q 001128 425 VHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1148)
Q Consensus 425 L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~ 483 (1148)
|+|+|||+|.. .|||||++.++|. .|. .+.|++|. .|.|+++++.+
T Consensus 457 L~~~V~D~D~~~~dD~LG~~~~~L~---~g~-~~~~~~l~---------~G~l~~~~~~~ 503 (540)
T 3nsj_A 457 LRVQVWDADYGWDDDLLGSCDRSPH---SGF-HEVTCELN---------HGRVKFSYHAK 503 (540)
T ss_dssp EEEEEEECCSSSCCEEEEEEEECCC---SEE-EEEEEECS---------SSEEEEEEEEE
T ss_pred EEEEEEECCCCCCCCEEEEEEEEee---CCc-EEEEEEcC---------CeEEEEEEEEE
Confidence 99999999985 5799999999987 353 56788862 14777777754
No 55
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A
Probab=99.37 E-value=3.6e-13 Score=166.88 Aligned_cols=103 Identities=22% Similarity=0.366 Sum_probs=91.7
Q ss_pred ceEEEEEEEEeeCCCC---CCCCCccccccccccCCCCCCCCcEEEEEECC--EEEEeeeeeeCCCCCeeceEEEEEecC
Q 001128 346 HGNLDIWIYSAKNLPN---MDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~---~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g--~~~~RTkvi~nt~NPvWNE~F~f~v~~ 420 (1148)
.|+|+|+|++|++|+. +|..++ +||||+|.+.+ ...+||+|+++++||+|||+|.|.+..
T Consensus 17 ~g~L~V~Vi~A~nL~~~~~~D~~g~---------------sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~ 81 (749)
T 1cjy_A 17 SHKFTVVVLRATKVTKGAFGDMLDT---------------PDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDP 81 (749)
T ss_dssp CEEEEEEEEEEECCCSCHHHHHHCC---------------CCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECT
T ss_pred ccEEEEEEEEEECCCCccccCCCCC---------------cCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecC
Confidence 4789999999999998 776665 89999999985 234599999999999999999999987
Q ss_pred C-CceEEEEEEEccCCCCcceeeEEEeceeeccCCcccceeeec
Q 001128 421 S-AAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1148)
Q Consensus 421 ~-~~~L~~~V~D~D~~~ddfIG~v~IpL~eL~~G~~~d~W~pL~ 463 (1148)
. ...|+|+|||+|..++++||++.|+|.+|..|...+.|++|.
T Consensus 82 ~~~~~L~~~V~D~D~~~ddfIG~v~I~L~~L~~g~~~~~w~~L~ 125 (749)
T 1cjy_A 82 NQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFN 125 (749)
T ss_dssp TSCCBCEEEEEECCSSSCEEEEEECCBSTTSCTTCCCCEEEEET
T ss_pred CCCCEEEEEEEECCCCCCceeEEEEEEHHHcCCCCceEEEEecC
Confidence 4 478999999999877999999999999999888888999995
No 56
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.35 E-value=3.8e-12 Score=140.87 Aligned_cols=101 Identities=29% Similarity=0.385 Sum_probs=82.2
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CE--EEEeeeeeeCCCCCeeceEEEEEecCC
Q 001128 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GA--VVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--g~--~~~RTkvi~nt~NPvWNE~F~f~v~~~ 421 (1148)
.|.|.|+|++|++|+.+|..+. +||||+|.+. +. ...||++++++.||+|||+|.|.+...
T Consensus 149 ~~~l~v~v~~a~~L~~~d~~~~---------------~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 213 (284)
T 2r83_A 149 AGKLTVVILEAKNLKKMDVGGL---------------SDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE 213 (284)
T ss_dssp TTEEEEEEEEEESCCCCSTTSC---------------CCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTT
T ss_pred CCceEEEEEEeECCCCcCCCCC---------------cCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHH
Confidence 4679999999999999988776 8999999984 33 346999999999999999999998654
Q ss_pred ---CceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeec
Q 001128 422 ---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1148)
Q Consensus 422 ---~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~ 463 (1148)
...|.|+|||+|.. .+++||++.|++..+.. ...+|+.++
T Consensus 214 ~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~--~~~~w~~~~ 257 (284)
T 2r83_A 214 QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGA--ELRHWSDML 257 (284)
T ss_dssp TGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHH--HHHHHHHHH
T ss_pred HhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCc--HHHHHHHHH
Confidence 25799999999985 58899999999987532 233454444
No 57
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.26 E-value=1.3e-12 Score=146.25 Aligned_cols=109 Identities=28% Similarity=0.352 Sum_probs=88.6
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CE--EEEeeeeeeCCCCCeeceEEEEEecCC
Q 001128 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GA--VVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--g~--~~~RTkvi~nt~NPvWNE~F~f~v~~~ 421 (1148)
.|.|.|+|++|++|+.+|..+. +||||+|.+. +. ...||++++++.||+|||+|.|.+...
T Consensus 151 ~~~l~v~v~~a~~L~~~d~~g~---------------~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 215 (296)
T 1dqv_A 151 AGLLTVTIIKASNLKAMDLTGF---------------SDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPE 215 (296)
T ss_dssp TTEEEEEEEEEESCCCCSSSSC---------------CCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSG
T ss_pred cceeEEEEEEeecCCccCCCCC---------------CCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHH
Confidence 4789999999999999998776 8999999996 32 335999999999999999999998654
Q ss_pred C---ceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeeccCCCCCC
Q 001128 422 A---AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1148)
Q Consensus 422 ~---~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~ 470 (1148)
. ..|.|+|||+|.. .+++||++.|++.++.. ...+.|+.|+...+++.
T Consensus 216 ~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~-~~~~~W~~~~~~~~~~~ 267 (296)
T 1dqv_A 216 SVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP-HGREHWAEMLANPRKPV 267 (296)
T ss_dssp GGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCH-HHHHHHHTSSSSSSSCS
T ss_pred HccCcEEEEEEEeCCCCCCCceEEEEEECCccCCc-hhHHHHHHHHhCCCCce
Confidence 2 5799999999986 58999999999987643 13467777776555543
No 58
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=99.12 E-value=1.4e-10 Score=142.89 Aligned_cols=119 Identities=21% Similarity=0.232 Sum_probs=89.9
Q ss_pred HHHHHHHHhhcc-----EEEEEEeEeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCc
Q 001128 843 TAYVKAIRSAQH-----FIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGA 917 (1148)
Q Consensus 843 ~Ayl~aI~~Ak~-----fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p~~~ 917 (1148)
++++++|++|++ .|+| ++||++.. ..++.+|++| +++|++|+||++...... ...
T Consensus 350 ~~v~~~I~~A~~dp~v~~I~i-t~Y~~~~d----------------~~I~~AL~~A--A~rGV~VrVLvd~~a~~~-~~~ 409 (687)
T 1xdp_A 350 EHVLELLRQASFDPSVLAIKI-NIYRVAKD----------------SRIIDSMIHA--AHNGKKVTVVVELQARFD-EEA 409 (687)
T ss_dssp HHHHHHHHHHHHCTTEEEEEE-EESSCCTT----------------CHHHHHHHHH--HHTTCEEEEEECTTCSST-TTT
T ss_pred hhHHHHHHHHhhCCcceEEEE-EeeeecCc----------------HHHHHHHHHH--HhcCCEEEEEECCCcccc-hhh
Confidence 568899999997 9999 99998432 1577777776 468999999999864110 000
Q ss_pred chhHHHHHHHHhHhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCCccee
Q 001128 918 ATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIY 997 (1148)
Q Consensus 918 s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~L~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~IY 997 (1148)
...+++.|.++|+++++. . ....
T Consensus 410 ----------------n~~~~~~L~~aGV~V~~~----~-------------------------------------~~~k 432 (687)
T 1xdp_A 410 ----------------NIHWAKRLTEAGVHVIFS----A-------------------------------------PGLK 432 (687)
T ss_dssp ----------------TTTTTHHHHHHTCEEEEC----C-------------------------------------TTCE
T ss_pred ----------------HHHHHHHHHHCCCEEEEe----c-------------------------------------CCcc
Confidence 113568899999988641 0 0124
Q ss_pred eeeEEEEEe----CeE---EEEcccccccccCCCCCCcceEEEEeCcchh
Q 001128 998 VHSKGMIVD----DEY---VILGSANINQRSMEGTRDTEIAMGAYQPEYT 1040 (1148)
Q Consensus 998 VHSKlmIVD----D~~---viIGSANLN~RSm~G~~DsEiav~i~dp~~~ 1040 (1148)
+|+|+|||| |++ +.|||+|+|.||+. .++|+++.+.+++.+
T Consensus 433 ~H~Ki~VID~re~~~i~~~a~iGS~N~d~rs~~--~n~D~~l~i~~~~i~ 480 (687)
T 1xdp_A 433 IHAKLFLISRKENGEVVRYAHIGTGNFNEKTAR--LYTDYSLLTADARIT 480 (687)
T ss_dssp ECCEEEEEEEEETTEEEEEEEEESSCSCTTGGG--TEEEEEEEECCHHHH
T ss_pred ccceEEEEEeccCCeEEEEEEEeCCcCCcchhh--hcceEEEEEeCHHHH
Confidence 899999999 455 99999999999997 899999999988643
No 59
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=99.09 E-value=2.6e-10 Score=121.86 Aligned_cols=138 Identities=16% Similarity=-0.000 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhhccEEEEEEeEeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCcch
Q 001128 840 SIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAAT 919 (1148)
Q Consensus 840 sI~~Ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p~~~s~ 919 (1148)
...+.++++|.+||+.|+|+. |++++ .+|+.+|.+| ++|||+|+||+....... .
T Consensus 58 ~~~~~ii~~I~~A~~sI~i~~-Y~~~~-----------------~~I~~aL~~A--a~RGV~VRii~D~~~~~~----~- 112 (220)
T 4gel_A 58 RNVAKIVEQIDRAVYSIDLAI-YTFTS-----------------LFLADSIKRA--LQRGVIIRIISDGEMVYS----K- 112 (220)
T ss_dssp HHHHHHHHHHHTCSSEEEEEC-SCBCC-----------------HHHHHHHHHH--HHHTCEEEEECCTTTTTS----T-
T ss_pred HHHHHHHHHHHHhhhEEEEEE-EEeCC-----------------HHHHHHHHHH--HHcCCeEEEEEechhhhh----h-
Confidence 456778999999999999997 55544 2577788776 468999999997532110 0
Q ss_pred hHHHHHHHHhHhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCCcceeee
Q 001128 920 QRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVH 999 (1148)
Q Consensus 920 ~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~L~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~IYVH 999 (1148)
...+..|...|+...+.... ...+....... + ..... +.....|
T Consensus 113 ---------------~~~~~~~~~~~~~~~~~~~~------~~~h~K~~viD----------~-~~~~~----~~~~~~H 156 (220)
T 4gel_A 113 ---------------GSQISMLAQLGVPVRVPITT------NLMHNKFCIID----------G-FERVE----EIRLLRK 156 (220)
T ss_dssp ---------------TCHHHHHHHTTCCEEECCSS------SCBCCCEEEES----------C-HHHHH----HHHHHTT
T ss_pred ---------------HHHHHHHHhcCCcEEeeccc------ccccceeEEEc----------c-hhccc----ccccccc
Confidence 01245566677765431000 00000000000 0 00000 0112468
Q ss_pred eEEEEEeCeEEEEcccccccccCCCCCCcceEEEEeCcchh
Q 001128 1000 SKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1040 (1148)
Q Consensus 1000 SKlmIVDD~~viIGSANLN~RSm~G~~DsEiav~i~dp~~~ 1040 (1148)
.|++|+|++++++||+||+.||+. .|.|..+++.++..+
T Consensus 157 ~K~~v~D~~~v~~GS~N~t~~s~~--~N~E~~~vi~~~~~a 195 (220)
T 4gel_A 157 LKFMRPCYSIVISGSVNWTALGLG--GNWENCIITADDKLT 195 (220)
T ss_dssp CSCCCCCCCEEEEESCCBSHHHHH--TSBEEEEEECCHHHH
T ss_pred eeccccccceEEecCccccccccc--cCceEEEEEECHHHH
Confidence 888888899999999999999998 799999999988654
No 60
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=99.08 E-value=1.4e-10 Score=143.98 Aligned_cols=106 Identities=25% Similarity=0.410 Sum_probs=90.3
Q ss_pred eeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC----CEEEEeeeeeeCCCCCeeceEEEEEec
Q 001128 344 LLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA----GAVVGRTFVISNSEDPVWQQHFYVPVA 419 (1148)
Q Consensus 344 Ll~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~----g~~~~RTkvi~nt~NPvWNE~F~f~v~ 419 (1148)
+..+.|.|+|++|++|..+|.++. +||||+|.+. .....||+++++++||+|||+|.|.+.
T Consensus 169 ~~~~~L~V~v~~a~~L~~~d~~g~---------------sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~ 233 (674)
T 3pfq_A 169 IDREVLIVVVRDAKNLVPMDPNGL---------------SDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLK 233 (674)
T ss_dssp ECSSEEEEEEEEEESCCCCSTTSS---------------CCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECC
T ss_pred eccceeeeeeecccccCCCCcccc---------------cCcccccccccCccccccccccccccccCCCccceeeeecc
Confidence 456789999999999999998876 8999999992 222359999999999999999999986
Q ss_pred CC--CceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeeccC
Q 001128 420 HS--AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNG 465 (1148)
Q Consensus 420 ~~--~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~ 465 (1148)
.. ...|.|+|||+|.. .+++||++.+++.+|..+. .++|+.|++.
T Consensus 234 ~~~~~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~ 281 (674)
T 3pfq_A 234 ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQ 281 (674)
T ss_dssp STTTTCEEEEEEEECCSSSCCEECCBCCCBTTHHHHCC-EEEEEECBCT
T ss_pred cCCccceeeeEEeecccccccccccccccchhhhccCC-cccceeeccc
Confidence 44 36799999999984 5899999999999998654 4799999864
No 61
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Probab=99.03 E-value=2e-09 Score=104.33 Aligned_cols=110 Identities=18% Similarity=0.231 Sum_probs=85.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEE---ee-eeeeCCCCCeeceEEEEEecCCC
Q 001128 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVG---RT-FVISNSEDPVWQQHFYVPVAHSA 422 (1148)
Q Consensus 347 GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~---RT-kvi~nt~NPvWNE~F~f~v~~~~ 422 (1148)
+.|+|.+.++.--+-+.. + ...||||.|.++..... +| .++++|..|+|||+|.-.+. ..
T Consensus 6 ~flRi~~~~~~~~~~~~~-~--------------~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~-~G 69 (126)
T 1yrk_A 6 PFLRIAFNSYELGSLQAE-D--------------EANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIY-EG 69 (126)
T ss_dssp CEEEEEEEEEECSSCCCS-S--------------SSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECC-TT
T ss_pred ccEEeeeccccccccCCc-c--------------ccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeee-CC
Confidence 448999877663221111 1 12799999999987766 77 77778999999999998876 46
Q ss_pred ceEEEEEEEccCCCCcceeeEEEeceeec-----cCCcccceeeeccCCCCCCCCCCcEEEEEEEe
Q 001128 423 AEVHFFVKDSDVVGSELIGTVAIPVEQIY-----SGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1148)
Q Consensus 423 ~~L~~~V~D~D~~~ddfIG~v~IpL~eL~-----~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~ 483 (1148)
+.|.|.|++... +||+.|+|++++|. .+...+.|+.|. +.|+|++.++|+
T Consensus 70 r~l~i~Vfh~a~---~fvAn~tV~~edL~~~c~~~~g~~e~WvdLe--------P~Gkl~~~i~~~ 124 (126)
T 1yrk_A 70 RVIQIVLMRAAE---EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQ--------PQAKVLMSVQYF 124 (126)
T ss_dssp CEEEEEEEEETT---EEEEEEEEEHHHHHHHHHTTTTEEEEEEECB--------SSCEEEEEEEEE
T ss_pred EEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCCCceEEEEecc--------cCcEEEEEEEEe
Confidence 789999997554 99999999999999 345678999994 346899999875
No 62
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}
Probab=99.00 E-value=1.8e-09 Score=105.98 Aligned_cols=109 Identities=18% Similarity=0.290 Sum_probs=86.9
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEE---Eee-eeeeCCCCCeeceEEEEEecCCCce
Q 001128 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVV---GRT-FVISNSEDPVWQQHFYVPVAHSAAE 424 (1148)
Q Consensus 349 L~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~---~RT-kvi~nt~NPvWNE~F~f~v~~~~~~ 424 (1148)
|+|.+.+.+--+-+...+. ..||||.|.++.... ++| .++++|..|+|||+|.-.+. ..+.
T Consensus 12 lRi~l~~~~~~~~~~~~~~--------------~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~-~Gr~ 76 (138)
T 2enj_A 12 LRIGLSNFDCGSCQSCQGE--------------AVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHIN-KGRV 76 (138)
T ss_dssp EEEEEEEEECCCCCCSCCC--------------CCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCC-SSCE
T ss_pred eEEEeeccccCCCCCcccc--------------cCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEE-CCeE
Confidence 8999988775442221111 279999999999877 889 77888999999999998875 4678
Q ss_pred EEEEEEEccCCCCcceeeEEEeceeec-----cCCcccceeeeccCCCCCCCCCCcEEEEEEEe
Q 001128 425 VHFFVKDSDVVGSELIGTVAIPVEQIY-----SGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1148)
Q Consensus 425 L~~~V~D~D~~~ddfIG~v~IpL~eL~-----~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~ 483 (1148)
|.|.|++... +||..|+|++++|. .+...+.|+.|. +.|+|++.++|.
T Consensus 77 l~i~Vfh~a~---~fVAn~tV~~edL~~~ck~~~g~~e~WvdLe--------P~Gkl~v~i~~~ 129 (138)
T 2enj_A 77 MQIIVKGKNV---DLISETTVELYSLAERCRKNNGKTEIWLELK--------PQGRMLMNARYF 129 (138)
T ss_dssp EEEEEECSSC---SCCEEEEEESHHHHHHHHHTTTCEEEEEECB--------SSCEEEEEEEEC
T ss_pred EEEEEEcCCC---CeeeEEEEEHHHHHhhhccCCCceEEEEecc--------cCcEEEEEEEEE
Confidence 9999996544 99999999999999 345678999994 346899999985
No 63
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=98.77 E-value=1.8e-08 Score=119.49 Aligned_cols=122 Identities=22% Similarity=0.307 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhhccEEEEEEeEeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCC-CCcc
Q 001128 840 SIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVP-TGAA 918 (1148)
Q Consensus 840 sI~~Ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p-~~~s 918 (1148)
.+..+++++|++||++|+||..||.++. ++.+++.+|.+|.++++||+|+||++.....-. .+..
T Consensus 37 ~~~~~l~~~I~~A~~~I~i~~~~~~~d~--------------~g~~l~~aL~~aa~r~~GV~Vril~D~~~~~r~~~g~~ 102 (458)
T 3hsi_A 37 EFKTQIIELIRNAKKRIYVTALYWQKDE--------------AGQEILDEIYRVKQENPHLDVKVLIDWHRAQRNLLGAE 102 (458)
T ss_dssp HHHHHHHHHHHTCSSEEEEEESCBCSSH--------------HHHHHHHHHHHHHHHSTTCEEEEEEETTGGGSCCC---
T ss_pred HHHHHHHHHHHhcCCEEEEEEEEEecCc--------------HHHHHHHHHHHHHhcCCCCEEEEEEECccccccccccc
Confidence 5789999999999999999999998753 245788888888776779999999997421000 0000
Q ss_pred hhHHHHHHHHhHhhHHHHHHHHHHHcC--Ccee--ecccccccccc--cCCcccccccCCCCCCCCCCCCchhhhhcccC
Q 001128 919 TQRILFWQHKTMQMMYETIYKALVEVG--LEGA--FSPQDYLNFFC--LGNREVIDQTDTSLSGNPTAPNTPEALSRKSG 992 (1148)
Q Consensus 919 ~~~il~~~~rTm~~~~~si~~~L~~~G--v~~~--~~P~~Yl~f~~--L~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r 992 (1148)
.. ....+++..|+++| +++. . |. ++.++
T Consensus 103 --~~---------~~~~~~~~~L~~~g~nv~v~~~~--------f~~p~~~~~--------------------------- 136 (458)
T 3hsi_A 103 --KS---------ATNADWYCEQRQTYQLPDDPNMF--------FGVPINTRE--------------------------- 136 (458)
T ss_dssp -------------CCHHHHHHHHHHHHTCTTCCCCE--------EEECSSSSG---------------------------
T ss_pred --cc---------cccHHHHHHHHhhCCCceEeeee--------cCCcccccc---------------------------
Confidence 00 00135678888877 6554 2 11 11000
Q ss_pred CcceeeeeEEEEEeCeEEEEcccccccccCC
Q 001128 993 RFMIYVHSKGMIVDDEYVILGSANINQRSME 1023 (1148)
Q Consensus 993 ~~~IYVHSKlmIVDD~~viIGSANLN~RSm~ 1023 (1148)
.....|.|++||||++++.| +||+++.+.
T Consensus 137 -~~~r~H~Ki~viD~~v~~~G-~Ni~d~y~~ 165 (458)
T 3hsi_A 137 -VFGVLHVKGFVFDDTVLYSG-ASINNVYLH 165 (458)
T ss_dssp -GGCCEECCEEEETTEEEEES-CCBSTTTTT
T ss_pred -ccCcceeeEEEECCCEEEEe-eecCHHHhc
Confidence 12368999999999998877 999999986
No 64
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=98.56 E-value=9.1e-08 Score=114.89 Aligned_cols=137 Identities=12% Similarity=0.110 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHhhccEEEEEEeEe-ecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCC--cEEEEEecCCCCCCCC
Q 001128 839 MSIHTAYVKAIRSAQHFIYIENQYF-IGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHER--FAAYIVIPMWPEGVPT 915 (1148)
Q Consensus 839 ~sI~~Ayl~aI~~Ak~fIYIENQYF-i~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rg--v~V~IVlP~~Peg~p~ 915 (1148)
..+..+++++|++||++|+|+..+| ..+. +...++.+|.+|. +|| |+|+||+...+.+...
T Consensus 65 ~~~~~~l~~~I~~Ak~~I~i~~y~~~~~d~--------------~g~~i~~aL~~aa--~rGp~V~Vril~D~~g~~~~~ 128 (506)
T 1v0w_A 65 KRLLAKMTENIGNATRTVDISTLAPFPNGA--------------FQDAIVAGLKESA--AKGNKLKVRILVGAAPVYHMN 128 (506)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEEESSCCCHH--------------HHHHHHHHHHHHH--HTTCCEEEEEEEECCC--CCC
T ss_pred HHHHHHHHHHHHHhccEEEEEEeeccCCCh--------------HHHHHHHHHHHHH--hCCCCcEEEEEEeCccccccc
Confidence 4689999999999999999997663 3221 2346777777764 567 9999999874321100
Q ss_pred CcchhHHHHHHHHhHhhHHHHHHHHHHHcCCceeecccccccccc--cCCcccccccCCCCCCCCCCCCchhhhhcccCC
Q 001128 916 GAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFC--LGNREVIDQTDTSLSGNPTAPNTPEALSRKSGR 993 (1148)
Q Consensus 916 ~~s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~--L~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 993 (1148)
. ....+.+.|+++|+++.. ++.+.. +... ..+
T Consensus 129 --~--------------~~~~~~~~L~~~g~~~~~----~~~~~~~~~~~~--------------------------~~~ 162 (506)
T 1v0w_A 129 --V--------------IPSKYRDELTAKLGKAAE----NITLNVASMTTS--------------------------KTA 162 (506)
T ss_dssp --C--------------HHHHHHHHHHHHHGGGGG----GEEEEEEEECSB--------------------------TTT
T ss_pred --c--------------CCHHHHHHHHhcccceee----cCcccccccccc--------------------------CCc
Confidence 0 112456778877764321 111110 0000 000
Q ss_pred cceeeeeEEEEEeCeEEEEccccc-ccccCCC-CCCcceEEEEeCcc
Q 001128 994 FMIYVHSKGMIVDDEYVILGSANI-NQRSMEG-TRDTEIAMGAYQPE 1038 (1148)
Q Consensus 994 ~~IYVHSKlmIVDD~~viIGSANL-N~RSm~G-~~DsEiav~i~dp~ 1038 (1148)
....|.|++|||++++++||+|| +++.+.. ..-.++.+.++.+.
T Consensus 163 -~~r~H~K~~ViD~~~a~~Gg~Nl~~d~y~~~~~~~~D~~v~i~G~~ 208 (506)
T 1v0w_A 163 -FSWNHSKILVVDGQSALTGGINSWKDDYLDTTHPVSDVDLALTGPA 208 (506)
T ss_dssp -TBCBCCCEEEETTTEEEEESCCCCHHHHTSSSSCCBEEEEEEESHH
T ss_pred -cccceeeEEEECCcEEEeeccccCccccccCCCCceEEEEEEECHH
Confidence 12579999999999999999998 6665531 02378888888764
No 65
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=98.17 E-value=5.3e-06 Score=102.01 Aligned_cols=120 Identities=13% Similarity=0.139 Sum_probs=88.2
Q ss_pred HHHHHHHHHhhcc-----EEEEEEeEeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCC
Q 001128 842 HTAYVKAIRSAQH-----FIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTG 916 (1148)
Q Consensus 842 ~~Ayl~aI~~Ak~-----fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p~~ 916 (1148)
.++++++|++|++ .|.|+ .|.++.. ..|+.+|++| |++|++|+||+....-.. ..
T Consensus 354 f~~vi~~I~~A~~DP~V~sIk~t-lYr~~~d----------------s~Iv~ALi~A--A~rGv~V~vLvel~arfd-ee 413 (705)
T 2o8r_A 354 YDYVVRLLMEAAISPDVSEIRLT-QYRVAEN----------------SSIISALEAA--AQSGKKVSVFVELKARFD-EE 413 (705)
T ss_dssp SHHHHHHHHHHHTCTTEEEEEEE-ESCCCSC----------------CHHHHHHHHH--HHTTCEEEEEECCCSCC----
T ss_pred HHHHHHHHHHhccCCCceEEEEE-EEEEcCC----------------HHHHHHHHHH--HHCCCEEEEEEeCCCCcc-hh
Confidence 4679999999999 99974 4555432 2577888877 468999999998532111 00
Q ss_pred cchhHHHHHHHHhHhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCCcce
Q 001128 917 AATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMI 996 (1148)
Q Consensus 917 ~s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~L~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~I 996 (1148)
++ ..+.+.|.++|+++.+. +. ..
T Consensus 414 ~n----------------i~wa~~Le~aGv~Vv~g---------~~--------------------------------~l 436 (705)
T 2o8r_A 414 NN----------------LRLSERMRRSGIRIVYS---------MP--------------------------------GL 436 (705)
T ss_dssp -C----------------HHHHHHHHHHTCEEEEC---------CT--------------------------------TC
T ss_pred hh----------------HHHHHHHHHCCCEEEEc---------cC--------------------------------CC
Confidence 11 13578899999988641 00 12
Q ss_pred eeeeEEEEEeCe---------EEEEcccccccccCCCCCCcceEEEEeCcchh
Q 001128 997 YVHSKGMIVDDE---------YVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1040 (1148)
Q Consensus 997 YVHSKlmIVDD~---------~viIGSANLN~RSm~G~~DsEiav~i~dp~~~ 1040 (1148)
.+|+|++|||++ |+.+|+.|+|..+.. .-+++++...++..+
T Consensus 437 k~H~Ki~lIdrr~~~~g~~~~y~~igtGN~n~~tar--iy~D~~l~t~~~~i~ 487 (705)
T 2o8r_A 437 KVHAKTALILYHTPAGERPQGIALLSTGNFNETTAR--IYSDTTLMTANTDIV 487 (705)
T ss_dssp CBCCCEEEEEECCCSSSCCCEEEEEESSCSSCCCSS--CEEEEEEEECCHHHH
T ss_pred CceeEEEEEecccccCCceeEEEeccccceeeeEEE--EEeeeeeeecChHHH
Confidence 579999999987 788999999999997 789999999888753
No 66
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=94.96 E-value=0.01 Score=67.64 Aligned_cols=35 Identities=11% Similarity=-0.066 Sum_probs=29.6
Q ss_pred EEEEeCeEEEEccccc----ccccCCCCCCcceEEEEeCcch
Q 001128 1002 GMIVDDEYVILGSANI----NQRSMEGTRDTEIAMGAYQPEY 1039 (1148)
Q Consensus 1002 lmIVDD~~viIGSANL----N~RSm~G~~DsEiav~i~dp~~ 1039 (1148)
++|+|++++++|++|. +.||+. .+.| ++++.|+.+
T Consensus 192 l~ivD~~~alv~~~~~~~~~~~rS~~--~~~e-aliv~~~~l 230 (342)
T 3qph_A 192 IGMTDGKEVVTIQNATFDSIGPPSFK--STYP-EIIFSQYSL 230 (342)
T ss_dssp EEEETTTEEEEECSSSCCSSCCCEEE--ECCH-HHHHHHHHH
T ss_pred EEEEECCEEEEecccccccccccccc--cccc-EEEEECHHH
Confidence 5999999999999998 349997 7888 888877664
No 67
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=93.95 E-value=0.079 Score=60.37 Aligned_cols=47 Identities=19% Similarity=0.126 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHHhhhcCCcEEEEE
Q 001128 545 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLV 604 (1148)
Q Consensus 545 ~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILV 604 (1148)
.....+.+.|.+|+++|++..|. ..-..+.+.|+++++|||+|++++
T Consensus 119 ~I~~ri~eli~~A~~eI~i~~~~-------------~~l~~l~~~L~~a~~RGV~Vrvi~ 165 (342)
T 3qph_A 119 EAIEMFRESLYSAKNEVIVVTPS-------------EFFETIREDLIKTLERGVTVSLYI 165 (342)
T ss_dssp HHHHHHHHHHHHCSSEEEEEECH-------------HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHhhheEEEEEeCH-------------HHHHHHHHHHHHHHhCCCEEEEEE
Confidence 45889999999999999999872 123567789999999999999997
No 68
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=93.35 E-value=0.1 Score=56.34 Aligned_cols=50 Identities=18% Similarity=0.062 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHHhhhcCCcEEEEEecC
Q 001128 545 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDD 607 (1148)
Q Consensus 545 ~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILVwD~ 607 (1148)
...+.+.+.|++|+++|+|..|. ..-..|.+.|++|++|||.|+|+++..
T Consensus 10 ~Ii~r~~e~I~~A~~el~lsi~~-------------e~l~~l~~~L~~A~~rGV~V~liv~~~ 59 (233)
T 2f5t_X 10 EAIEMFRESLYSAKNEVIVVTPS-------------EFFETIREDLIKTLERGVTVSLYIDKI 59 (233)
T ss_dssp HHHHHHHHHHHTCSSEEEEEECG-------------GGHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred HHHHHHHHHHHHhhhEEEEEeCH-------------HHHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 45789999999999999998871 245789999999999999999999653
No 69
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=82.67 E-value=1.2 Score=47.71 Aligned_cols=40 Identities=18% Similarity=0.163 Sum_probs=34.9
Q ss_pred eeeeEEEEE---eCeEEEEcccccccccCCCCCCcceEEEEeCcc
Q 001128 997 YVHSKGMIV---DDEYVILGSANINQRSMEGTRDTEIAMGAYQPE 1038 (1148)
Q Consensus 997 YVHSKlmIV---DD~~viIGSANLN~RSm~G~~DsEiav~i~dp~ 1038 (1148)
.+|+|+... |.+.+||||.||..--|. .|-|+++.+++..
T Consensus 103 i~HaK~Yg~~~n~g~~LIV~SgNfT~pGms--QNvE~sllld~~T 145 (358)
T 2c1l_A 103 ILHAKLYGTSNNLGESLVVSSGNFTGPGMS--QNIEASLLLDNNT 145 (358)
T ss_dssp CBCCEEEEEEETTEEEEEEESCCBSTTTTT--TSBEEEEEECHHH
T ss_pred ecchhhhcccCCCceEEEEecCCccccccc--cceeEEEEEcCCC
Confidence 579998876 568899999999999997 8999999998764
No 70
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=81.03 E-value=3.4 Score=52.84 Aligned_cols=71 Identities=13% Similarity=0.241 Sum_probs=49.4
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEE---EeeeeeeCCCCCeeceEEEEEec
Q 001128 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVV---GRTFVISNSEDPVWQQHFYVPVA 419 (1148)
Q Consensus 345 l~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l--~g~~~---~RTkvi~nt~NPvWNE~F~f~v~ 419 (1148)
+...|.|+|..+.++...+ . .+-||++.+ +++.. ..|+.+.-..+|.|||.+.|++.
T Consensus 215 ~~~~f~i~i~~~~~~~~~~---~---------------~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~ 276 (940)
T 2wxf_A 215 LEQPFSIELIEGRKVNADE---R---------------MKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDIS 276 (940)
T ss_dssp CCSEEEEEEEEEECCCC---------------------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEE
T ss_pred cCCceEEEEEEecccCCCC---C---------------ceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccc
Confidence 3456899999999987321 1 577888776 44433 24555555788999998888753
Q ss_pred --CC--CceEEEEEEEcc
Q 001128 420 --HS--AAEVHFFVKDSD 433 (1148)
Q Consensus 420 --~~--~~~L~~~V~D~D 433 (1148)
+. .+.|.|+||+..
T Consensus 277 i~dLPr~a~L~~ti~~~~ 294 (940)
T 2wxf_A 277 VCDLPRMARLCFALYAVV 294 (940)
T ss_dssp GGGCCTTCEEEEEEEEEC
T ss_pred cccCCcccEEEEEEEEec
Confidence 22 488999999853
No 71
>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=73.62 E-value=8.2 Score=38.94 Aligned_cols=98 Identities=14% Similarity=0.115 Sum_probs=69.3
Q ss_pred cEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCC--------CceEEEEEEEccCCCCcceeeEEEeceeeccC-Cc
Q 001128 385 PYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS--------AAEVHFFVKDSDVVGSELIGTVAIPVEQIYSG-GK 455 (1148)
Q Consensus 385 PYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~--------~~~L~~~V~D~D~~~ddfIG~v~IpL~eL~~G-~~ 455 (1148)
.||++.+-.-....|-++. ..+|.+|-+-.+.|... ...|.|+++...-..-+.||++.|++.+|... ..
T Consensus 44 tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~lELhqa~g~~~~tla~~~I~l~~lLe~~~~ 122 (156)
T 2yrb_A 44 TFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEVHQAYSTEYETIAACQLKFHEILEKSGR 122 (156)
T ss_dssp EEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEEEEECSSCEEEEEEEEECCSHHHHCCSC
T ss_pred EEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEEEEEEeeCCCceEEEEEEEEhHHhhCcCCc
Confidence 3666666554443566555 89999999888877543 24688888875434446899999999999844 34
Q ss_pred ccceeeeccCCCCCCCCCCcEEEEEEEec
Q 001128 456 VEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1148)
Q Consensus 456 ~d~W~pL~~~~Gk~~~~~g~L~L~l~f~p 484 (1148)
+.+..+|.+.+|+. ..-|.|.+.|++..
T Consensus 123 i~g~~~L~g~~g~~-~~~G~LeywiRL~~ 150 (156)
T 2yrb_A 123 IFCTASLIGTKGDI-PNFGTVEYWFRLRV 150 (156)
T ss_dssp EEEEEEECBSSSCC-TTSEEEEEEEEEEE
T ss_pred eEEEEEEEcCCCCc-ceEEEEEEEEEEec
Confidence 56677998887742 13469999998763
No 72
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=70.98 E-value=6.2 Score=51.02 Aligned_cols=89 Identities=15% Similarity=0.196 Sum_probs=56.4
Q ss_pred eeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEE---EeeeeeeCCCCCeeceEEEE
Q 001128 342 VLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVV---GRTFVISNSEDPVWQQHFYV 416 (1148)
Q Consensus 342 ~~Ll~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l--~g~~~---~RTkvi~nt~NPvWNE~F~f 416 (1148)
+|-+...++|+|..+.++.. +.... .+-||++.+ +++.. .+|+.+. ..+|.|||.++|
T Consensus 350 lw~~~~~f~v~i~~~~~~n~-~~~~~---------------~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f 412 (1091)
T 3hhm_A 350 LWVINSALRIKILCATYVNV-NIRDI---------------DKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNY 412 (1091)
T ss_dssp GGGCCSEEEEEEEEESCCCC-CCSSC---------------CCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEE
T ss_pred hhhCCCCEEEEEEEecCCCC-Ccccc---------------ceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEe
Confidence 45667789999999998863 22111 577998888 33222 2444333 567889997777
Q ss_pred Ee--cCC--CceEEEEEEEccCC-----CCcceeeEEEec
Q 001128 417 PV--AHS--AAEVHFFVKDSDVV-----GSELIGTVAIPV 447 (1148)
Q Consensus 417 ~v--~~~--~~~L~~~V~D~D~~-----~ddfIG~v~IpL 447 (1148)
++ .+. .+.|.|+|++.... ....||.+.++|
T Consensus 413 ~i~i~dLPr~arL~~tl~~~~~~~~~~~~~~~lg~~n~~l 452 (1091)
T 3hhm_A 413 DIYIPDLPRAARLCLSICSVKGRKGAKEEHCPLAWGNINL 452 (1091)
T ss_dssp EEEGGGCCTTCEEEEEECCCCCCC-------CCEEEEEES
T ss_pred cCccccCChhcEEEEEEEEecCccCcccccceeEEeeeee
Confidence 75 332 48999999986542 123566665555
No 73
>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}
Probab=64.51 E-value=11 Score=40.06 Aligned_cols=38 Identities=11% Similarity=0.308 Sum_probs=31.2
Q ss_pred EeeeeeeCCCCCeeceEEEEEecCC---CceEEEEEEEccC
Q 001128 397 GRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSDV 434 (1148)
Q Consensus 397 ~RTkvi~nt~NPvWNE~F~f~v~~~---~~~L~~~V~D~D~ 434 (1148)
.+|-|...+.+|.|+|++.+.+... ...|.|++++...
T Consensus 79 ~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~ 119 (220)
T 3l4c_A 79 YKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSS 119 (220)
T ss_dssp EECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCC
T ss_pred EEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecc
Confidence 4888888899999999999988543 3789999987554
No 74
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=63.33 E-value=19 Score=46.20 Aligned_cols=76 Identities=11% Similarity=0.056 Sum_probs=48.5
Q ss_pred eeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEEE--eeeeeeCCCCCeeceEEEEE
Q 001128 342 VLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVG--RTFVISNSEDPVWQQHFYVP 417 (1148)
Q Consensus 342 ~~Ll~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l--~g~~~~--RTkvi~nt~NPvWNE~F~f~ 417 (1148)
+|-+...++|+|..+......+ .. .++-||++.| +++... +|+-+.-+.+|.|||.++|+
T Consensus 213 lw~~~~~f~i~i~~~~~~~~~~-~~---------------~~~~~V~~~l~~G~~~l~~~~t~~~~~~~~~~Wne~l~f~ 276 (961)
T 1e7u_A 213 LWDCDRKFRVKIRGIDIPVLPR-TA---------------DLTVFVEANIQYGQQVLCQRRTSPKPFTEEVLWNVWLEFS 276 (961)
T ss_dssp CSCCCSEEEEEEEEEECSSCCT-TS---------------CEEEEEEEEEEETTEEEEEEECCCEECCSEEEEEEEEEEE
T ss_pred eeeccCceEEEEeecccccccC-CC---------------CceEEEEEEEEECCEEcccceeeccccCCCcccceeEEec
Confidence 4556667899999886421000 01 1577888766 555443 44444446789999987776
Q ss_pred ec--CC--CceEEEEEEEcc
Q 001128 418 VA--HS--AAEVHFFVKDSD 433 (1148)
Q Consensus 418 v~--~~--~~~L~~~V~D~D 433 (1148)
+. +. .+.|.|+||+..
T Consensus 277 i~i~dLPr~a~L~~ti~~~~ 296 (961)
T 1e7u_A 277 IKIKDLPKGALLNLQIYCGA 296 (961)
T ss_dssp EEGGGCCTTCEEEEEEEEEE
T ss_pred cccccCCcccEEEEEEEecc
Confidence 53 32 488999999754
No 75
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=59.05 E-value=6.4 Score=51.10 Aligned_cols=75 Identities=13% Similarity=0.178 Sum_probs=51.3
Q ss_pred ceeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEEE---eeeeeeCCCCCeeceEEE
Q 001128 341 KVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVG---RTFVISNSEDPVWQQHFY 415 (1148)
Q Consensus 341 ~~~Ll~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l--~g~~~~---RTkvi~nt~NPvWNE~F~ 415 (1148)
.+|-+...++|+|..+.++...+ . .+-||++.+ +++... +|+.+.-..+|.|||.+.
T Consensus 347 s~~~~~~~f~i~i~~~~~~~~~~---~---------------~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~ 408 (1092)
T 2y3a_A 347 HIWDNNNPFQITLVKGNKLNTEE---T---------------VKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLE 408 (1092)
T ss_dssp -CCCCCSEEEEEECCCCCCCCCS---S---------------CCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEE
T ss_pred ehhhcCCCEEEEEEEeccCCCCC---C---------------ceEEEEEEEEECCEEccCceecccccCCCCCccceeEE
Confidence 45667788999999999986321 1 567777555 555432 455544477899999888
Q ss_pred EEec--CC--CceEEEEEEEcc
Q 001128 416 VPVA--HS--AAEVHFFVKDSD 433 (1148)
Q Consensus 416 f~v~--~~--~~~L~~~V~D~D 433 (1148)
|++. +. .+.|.|+||+..
T Consensus 409 f~i~~~dLPr~a~L~~ti~~~~ 430 (1092)
T 2y3a_A 409 FDINICDLPRMARLCFAVYAVL 430 (1092)
T ss_dssp EEEESSSCCTTCEEEEECCCC-
T ss_pred eCCccccCChhcEEEEEEEEec
Confidence 7753 22 488999998853
No 76
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=43.10 E-value=33 Score=36.74 Aligned_cols=50 Identities=10% Similarity=0.068 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHhhccEEEEEEeEeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecC
Q 001128 839 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPM 908 (1148)
Q Consensus 839 ~sI~~Ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~ 908 (1148)
..|.+-..++|++|++.|+| .++.. . -.++...|.+| .++||.|+|++..
T Consensus 9 e~Ii~r~~e~I~~A~~el~l----si~~e-------------~-l~~l~~~L~~A--~~rGV~V~liv~~ 58 (233)
T 2f5t_X 9 DEAIEMFRESLYSAKNEVIV----VTPSE-------------F-FETIREDLIKT--LERGVTVSLYIDK 58 (233)
T ss_dssp HHHHHHHHHHHHTCSSEEEE----EECGG-------------G-HHHHHHHHHHH--HHTTCEEEEEESS
T ss_pred HHHHHHHHHHHHHhhhEEEE----EeCHH-------------H-HHHHHHHHHHH--HHCCCEEEEEEcC
Confidence 36888899999999999999 33321 1 13455556655 3689999999975
No 77
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication, transcription, hydrolase, replication,transcription, hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP: d.136.1.3 d.136.1.3
Probab=32.79 E-value=23 Score=42.59 Aligned_cols=42 Identities=29% Similarity=0.233 Sum_probs=30.3
Q ss_pred CcceeeeeEEEEE---------e---C----eEEEEcccccccccCCC----CCCcceEEEE
Q 001128 993 RFMIYVHSKGMIV---------D---D----EYVILGSANINQRSMEG----TRDTEIAMGA 1034 (1148)
Q Consensus 993 ~~~IYVHSKlmIV---------D---D----~~viIGSANLN~RSm~G----~~DsEiav~i 1034 (1148)
|....-|.|++|- | | .|++||||||-.-.+.- -++.||+|++
T Consensus 426 R~~a~PHiKty~r~~~~~~~~~~~~~~~~~i~W~lltSaNLSkaAWG~~~k~irnyElGVL~ 487 (544)
T 1q32_A 426 RGTTPAHSKFYMHCATNSAGPCDASQVFKELEWCLYTSANLSQTAWGTVSRKPRNYEAGVLY 487 (544)
T ss_dssp TTTCCBCCEEEEEEEECC-------CTTSEESEEEEESCCBSHHHHCCSSSCCSSBEEEEEE
T ss_pred CCCccCceEEEEeeccccccccccCCCccceeEEEEccccCCHHHhhhhhccccceEeEEEe
Confidence 4457889999873 2 2 48999999996543320 1789999999
Done!