Query 001130
Match_columns 1148
No_of_seqs 696 out of 3687
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 16:39:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001130.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001130hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03008 Phospholipase D delta 100.0 8E-178 2E-182 1585.8 69.8 803 337-1148 4-868 (868)
2 PLN02270 phospholipase D alpha 100.0 9E-168 2E-172 1501.6 67.8 786 343-1148 4-808 (808)
3 PLN02352 phospholipase D epsil 100.0 3E-161 8E-166 1443.7 65.6 740 342-1148 5-758 (758)
4 KOG1329 Phospholipase D1 [Lipi 100.0 2E-144 5E-149 1289.8 53.8 751 336-1148 65-853 (887)
5 PLN02866 phospholipase D 100.0 1.1E-93 2.4E-98 872.4 52.2 531 506-1128 321-1060(1068)
6 PRK12452 cardiolipin synthetas 100.0 2.3E-47 5E-52 457.5 34.9 335 507-1040 132-466 (509)
7 PRK01642 cls cardiolipin synth 100.0 2.8E-46 6E-51 447.1 35.1 331 507-1040 108-440 (483)
8 PRK11263 cardiolipin synthase 100.0 9.1E-45 2E-49 424.1 35.4 326 510-1040 3-328 (411)
9 COG1502 Cls Phosphatidylserine 100.0 5.5E-35 1.2E-39 346.1 34.5 337 512-1040 57-395 (438)
10 PRK09428 pssA phosphatidylseri 100.0 1E-32 2.2E-37 325.2 32.5 352 509-1040 20-396 (451)
11 PHA02820 phospholipase-D-like 100.0 8.2E-32 1.8E-36 316.5 32.1 325 545-1037 26-360 (424)
12 PHA03003 palmytilated EEV memb 100.0 5.3E-31 1.1E-35 305.7 30.7 318 545-1039 31-348 (369)
13 PLN02230 phosphoinositide phos 99.9 1.5E-26 3.4E-31 276.5 11.7 178 285-482 374-597 (598)
14 KOG0169 Phosphoinositide-speci 99.9 1.7E-26 3.7E-31 274.9 9.7 177 286-484 524-745 (746)
15 PLN02223 phosphoinositide phos 99.9 1E-25 2.2E-30 264.8 14.8 173 288-481 317-535 (537)
16 PLN02222 phosphoinositide phos 99.9 4.2E-25 9.2E-30 263.9 13.1 178 285-482 357-580 (581)
17 cd04015 C2_plant_PLD C2 domain 99.9 2.5E-24 5.3E-29 222.0 16.3 142 342-483 2-158 (158)
18 PLN02952 phosphoinositide phos 99.9 1E-24 2.3E-29 261.4 12.5 176 285-482 375-596 (599)
19 PLN02228 Phosphoinositide phos 99.9 8.8E-24 1.9E-28 252.1 12.0 180 286-485 340-563 (567)
20 PF12357 PLD_C: Phospholipase 99.9 4.1E-22 8.9E-27 175.4 5.7 72 1068-1139 2-73 (74)
21 cd04016 C2_Tollip C2 domain pr 99.9 8.1E-21 1.8E-25 187.3 15.2 118 346-482 1-121 (121)
22 KOG1264 Phospholipase C [Lipid 99.8 2.5E-21 5.4E-26 227.3 12.3 176 286-488 972-1194(1267)
23 cd08379 C2D_MCTP_PRT_plant C2 99.8 9.1E-20 2E-24 181.1 13.7 114 349-478 2-125 (126)
24 cd04013 C2_SynGAP_like C2 doma 99.8 2.7E-19 5.8E-24 181.6 15.2 124 346-489 10-145 (146)
25 cd04042 C2A_MCTP_PRT C2 domain 99.8 4.1E-19 8.9E-24 174.7 15.3 119 349-484 2-121 (121)
26 cd08682 C2_Rab11-FIP_classI C2 99.8 3.9E-19 8.4E-24 176.2 13.4 117 349-481 1-126 (126)
27 PRK05443 polyphosphate kinase; 99.8 6.7E-18 1.5E-22 207.8 25.1 272 543-1040 346-634 (691)
28 cd04019 C2C_MCTP_PRT_plant C2 99.8 4.7E-18 1E-22 174.0 14.8 123 349-487 2-136 (150)
29 cd08400 C2_Ras_p21A1 C2 domain 99.8 1E-17 2.2E-22 166.5 15.9 119 347-484 4-124 (126)
30 cd08681 C2_fungal_Inn1p-like C 99.8 3.6E-18 7.8E-23 166.9 12.2 116 347-482 1-118 (118)
31 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.1E-17 2.3E-22 165.3 14.5 118 349-482 2-121 (121)
32 TIGR03705 poly_P_kin polyphosp 99.7 4.4E-17 9.6E-22 199.5 21.6 270 545-1039 339-624 (672)
33 cd04022 C2A_MCTP_PRT_plant C2 99.7 1.1E-17 2.5E-22 165.9 13.4 120 348-484 1-127 (127)
34 cd04014 C2_PKC_epsilon C2 doma 99.7 5.1E-17 1.1E-21 162.4 15.1 126 344-484 1-130 (132)
35 cd08378 C2B_MCTP_PRT_plant C2 99.7 3E-17 6.5E-22 162.0 12.7 113 349-483 2-120 (121)
36 cd08678 C2_C21orf25-like C2 do 99.7 5.7E-17 1.2E-21 160.8 14.5 122 349-487 1-124 (126)
37 cd08377 C2C_MCTP_PRT C2 domain 99.7 6.7E-17 1.5E-21 157.9 14.5 118 347-483 1-119 (119)
38 cd08391 C2A_C2C_Synaptotagmin_ 99.7 6.3E-17 1.4E-21 158.3 13.5 120 347-482 1-121 (121)
39 cd04024 C2A_Synaptotagmin-like 99.7 8.8E-17 1.9E-21 158.9 14.1 120 347-482 1-128 (128)
40 cd04036 C2_cPLA2 C2 domain pre 99.7 7.5E-17 1.6E-21 158.2 13.0 113 349-482 2-117 (119)
41 cd04044 C2A_Tricalbin-like C2 99.7 9.9E-17 2.2E-21 157.5 13.4 121 347-484 2-124 (124)
42 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 1.8E-16 3.9E-21 156.3 14.6 117 349-481 2-120 (121)
43 cd08376 C2B_MCTP_PRT C2 domain 99.7 1.7E-16 3.6E-21 154.7 14.2 112 349-483 2-115 (116)
44 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 2.5E-16 5.3E-21 155.3 14.1 117 349-481 2-123 (123)
45 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 2E-16 4.3E-21 157.8 13.6 120 348-483 1-133 (133)
46 cd08395 C2C_Munc13 C2 domain t 99.7 1.3E-16 2.8E-21 157.3 11.8 100 348-463 1-111 (120)
47 KOG1030 Predicted Ca2+-depende 99.7 7.4E-17 1.6E-21 163.9 10.0 98 343-456 2-100 (168)
48 cd04046 C2_Calpain C2 domain p 99.7 6.3E-16 1.4E-20 153.5 15.5 121 346-484 2-123 (126)
49 cd08373 C2A_Ferlin C2 domain f 99.7 5.3E-16 1.1E-20 153.9 13.9 117 353-489 2-122 (127)
50 cd08381 C2B_PI3K_class_II C2 d 99.7 2.5E-16 5.5E-21 155.7 11.2 101 346-462 12-121 (122)
51 cd04050 C2B_Synaptotagmin-like 99.7 3.5E-16 7.5E-21 150.3 11.5 98 349-464 2-102 (105)
52 cd08375 C2_Intersectin C2 doma 99.7 7.8E-16 1.7E-20 155.1 14.0 114 347-482 15-135 (136)
53 cd08688 C2_KIAA0528-like C2 do 99.7 5E-16 1.1E-20 150.5 11.0 100 349-464 1-109 (110)
54 cd08685 C2_RGS-like C2 domain 99.6 3.5E-16 7.7E-21 154.1 9.6 102 345-462 10-119 (119)
55 cd08382 C2_Smurf-like C2 domai 99.6 1.7E-15 3.6E-20 149.8 13.1 116 349-480 2-122 (123)
56 cd08387 C2A_Synaptotagmin-8 C2 99.6 1.1E-15 2.3E-20 151.0 11.6 103 346-463 15-123 (124)
57 cd04045 C2C_Tricalbin-like C2 99.6 1.6E-15 3.5E-20 149.5 12.7 104 347-466 1-105 (120)
58 cd08394 C2A_Munc13 C2 domain f 99.6 2.2E-15 4.9E-20 148.9 13.5 98 347-464 2-101 (127)
59 cd04010 C2B_RasA3 C2 domain se 99.6 1.4E-15 3E-20 155.4 12.4 104 348-468 1-126 (148)
60 cd04028 C2B_RIM1alpha C2 domai 99.6 1.5E-15 3.2E-20 154.7 11.8 106 345-465 27-139 (146)
61 cd08677 C2A_Synaptotagmin-13 C 99.6 1E-15 2.2E-20 149.9 10.0 99 346-462 13-118 (118)
62 cd04018 C2C_Ferlin C2 domain t 99.6 1.2E-15 2.6E-20 156.2 11.0 102 348-453 1-107 (151)
63 cd04051 C2_SRC2_like C2 domain 99.6 1.1E-15 2.5E-20 150.9 10.5 113 348-478 1-125 (125)
64 cd08385 C2A_Synaptotagmin-1-5- 99.6 1.9E-15 4.1E-20 149.1 11.8 104 345-463 14-123 (124)
65 cd04027 C2B_Munc13 C2 domain s 99.6 3.4E-15 7.4E-20 148.5 13.3 114 348-480 2-127 (127)
66 cd04029 C2A_SLP-4_5 C2 domain 99.6 2.7E-15 5.8E-20 149.0 12.3 103 345-462 13-124 (125)
67 cd04041 C2A_fungal C2 domain f 99.6 1.8E-15 4E-20 146.8 10.6 99 347-463 1-107 (111)
68 cd08393 C2A_SLP-1_2 C2 domain 99.6 2.2E-15 4.8E-20 149.5 10.3 103 346-463 14-125 (125)
69 cd04043 C2_Munc13_fungal C2 do 99.6 9.5E-15 2.1E-19 144.4 14.4 113 348-483 2-121 (126)
70 KOG1265 Phospholipase C [Lipid 99.6 7.5E-16 1.6E-20 183.7 7.3 155 285-471 607-812 (1189)
71 cd04030 C2C_KIAA1228 C2 domain 99.6 4.5E-15 9.8E-20 146.8 11.4 101 347-462 16-126 (127)
72 cd04017 C2D_Ferlin C2 domain f 99.6 1.6E-14 3.4E-19 145.2 15.3 118 348-485 2-134 (135)
73 cd04039 C2_PSD C2 domain prese 99.6 5.5E-15 1.2E-19 143.2 11.6 97 347-455 1-100 (108)
74 cd08676 C2A_Munc13-like C2 dom 99.6 2E-15 4.4E-20 154.9 8.8 119 319-462 6-153 (153)
75 cd04040 C2D_Tricalbin-like C2 99.6 7.3E-15 1.6E-19 142.8 12.1 105 349-468 1-107 (115)
76 cd08383 C2A_RasGAP C2 domain ( 99.6 1.6E-14 3.4E-19 140.7 14.3 112 349-482 2-117 (117)
77 cd04031 C2A_RIM1alpha C2 domai 99.6 5.9E-15 1.3E-19 145.4 11.4 102 346-463 15-125 (125)
78 cd04049 C2_putative_Elicitor-r 99.6 7.3E-15 1.6E-19 145.1 12.1 101 347-463 1-107 (124)
79 cd04052 C2B_Tricalbin-like C2 99.6 8.5E-15 1.8E-19 142.2 11.5 98 382-485 12-111 (111)
80 cd08386 C2A_Synaptotagmin-7 C2 99.6 1.1E-14 2.4E-19 143.7 11.9 103 346-463 15-124 (125)
81 cd08392 C2A_SLP-3 C2 domain fi 99.6 8.7E-15 1.9E-19 146.1 10.7 102 346-462 14-127 (128)
82 cd08521 C2A_SLP C2 domain firs 99.6 1.1E-14 2.5E-19 143.0 11.4 102 346-462 13-123 (123)
83 cd04011 C2B_Ferlin C2 domain s 99.6 1.9E-14 4.2E-19 139.5 12.0 97 348-464 5-110 (111)
84 cd08384 C2B_Rabphilin_Doc2 C2 99.6 8.9E-15 1.9E-19 146.2 9.6 108 346-470 12-127 (133)
85 cd08690 C2_Freud-1 C2 domain f 99.5 4.3E-14 9.3E-19 145.1 13.8 118 349-484 4-138 (155)
86 cd08680 C2_Kibra C2 domain fou 99.5 1.8E-14 3.9E-19 143.0 10.5 102 346-462 13-124 (124)
87 cd00275 C2_PLC_like C2 domain 99.5 7.1E-14 1.5E-18 138.1 14.3 116 348-482 3-127 (128)
88 cd08388 C2A_Synaptotagmin-4-11 99.5 4.8E-14 1E-18 140.7 12.5 102 346-462 15-126 (128)
89 cd08390 C2A_Synaptotagmin-15-1 99.5 3.9E-14 8.5E-19 139.3 11.7 103 346-463 13-122 (123)
90 cd08404 C2B_Synaptotagmin-4 C2 99.5 2.5E-14 5.5E-19 143.8 10.2 108 346-470 14-129 (136)
91 cd04032 C2_Perforin C2 domain 99.5 3.8E-14 8.3E-19 141.2 10.8 88 347-451 28-118 (127)
92 cd08403 C2B_Synaptotagmin-3-5- 99.5 2E-14 4.4E-19 144.0 8.7 109 345-470 12-128 (134)
93 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.5 3.8E-14 8.3E-19 147.0 10.6 103 345-462 25-136 (162)
94 cd08675 C2B_RasGAP C2 domain s 99.5 5.6E-14 1.2E-18 141.9 11.4 101 349-465 1-121 (137)
95 cd08406 C2B_Synaptotagmin-12 C 99.5 2.6E-14 5.6E-19 144.1 8.6 108 346-470 14-129 (136)
96 cd08402 C2B_Synaptotagmin-1 C2 99.5 2.6E-14 5.7E-19 143.5 8.7 109 345-470 13-129 (136)
97 cd08407 C2B_Synaptotagmin-13 C 99.5 2.2E-14 4.8E-19 144.8 7.8 111 345-470 13-131 (138)
98 cd08389 C2A_Synaptotagmin-14_1 99.5 5.5E-14 1.2E-18 139.4 10.2 101 347-463 16-123 (124)
99 cd08405 C2B_Synaptotagmin-7 C2 99.5 4E-14 8.7E-19 142.2 9.3 108 346-470 14-129 (136)
100 cd00138 PLDc Phospholipase D. 99.5 2.1E-13 4.5E-18 142.0 15.0 144 545-759 21-169 (176)
101 cd04038 C2_ArfGAP C2 domain pr 99.5 9.5E-14 2E-18 141.5 11.9 92 347-455 2-94 (145)
102 cd04026 C2_PKC_alpha_gamma C2 99.5 7.7E-14 1.7E-18 139.1 11.0 106 344-465 10-122 (131)
103 cd00276 C2B_Synaptotagmin C2 d 99.5 4E-14 8.7E-19 140.9 8.8 108 346-470 13-128 (134)
104 KOG0696 Serine/threonine prote 99.5 1.1E-14 2.5E-19 163.3 4.0 104 346-465 179-289 (683)
105 cd08410 C2B_Synaptotagmin-17 C 99.5 6.3E-14 1.4E-18 141.0 8.2 108 346-470 13-129 (135)
106 cd04009 C2B_Munc13-like C2 dom 99.5 1.2E-13 2.6E-18 138.4 9.9 91 347-452 16-118 (133)
107 cd04021 C2_E3_ubiquitin_ligase 99.5 3.8E-13 8.1E-18 133.6 13.3 116 348-480 3-124 (125)
108 cd08692 C2B_Tac2-N C2 domain s 99.5 1.4E-13 3E-18 138.0 9.9 110 345-470 12-129 (135)
109 cd04048 C2A_Copine C2 domain f 99.5 2E-13 4.3E-18 134.3 10.8 97 352-463 5-113 (120)
110 KOG1028 Ca2+-dependent phospho 99.5 4.6E-13 9.9E-18 158.2 15.2 179 346-546 166-354 (421)
111 PHA02820 phospholipase-D-like 99.5 7.1E-13 1.5E-17 156.9 16.3 147 799-1036 4-150 (424)
112 cd08691 C2_NEDL1-like C2 domai 99.5 5.8E-13 1.3E-17 134.5 13.2 114 349-480 3-136 (137)
113 cd08409 C2B_Synaptotagmin-15 C 99.5 1.2E-13 2.6E-18 139.4 8.3 108 346-469 14-129 (137)
114 cd04037 C2E_Ferlin C2 domain f 99.4 7.1E-13 1.5E-17 131.4 12.2 89 349-452 2-93 (124)
115 PLN03200 cellulose synthase-in 99.4 2.6E-13 5.7E-18 179.6 11.2 122 345-484 1978-2101(2102)
116 cd04035 C2A_Rabphilin_Doc2 C2 99.4 7.2E-13 1.6E-17 130.7 11.5 99 347-460 15-121 (123)
117 cd08408 C2B_Synaptotagmin-14_1 99.4 3.2E-13 6.9E-18 136.6 7.7 109 346-470 14-131 (138)
118 cd08686 C2_ABR C2 domain in th 99.4 1.6E-12 3.4E-17 127.3 12.0 79 349-448 1-91 (118)
119 cd00138 PLDc Phospholipase D. 99.4 1.1E-11 2.4E-16 129.1 14.9 130 839-1038 20-152 (176)
120 PRK13912 nuclease NucT; Provis 99.3 4.4E-11 9.5E-16 126.0 16.5 140 545-759 33-174 (177)
121 PHA03003 palmytilated EEV memb 99.3 1.8E-11 4E-16 142.9 14.5 141 546-759 217-363 (369)
122 PRK13912 nuclease NucT; Provis 99.3 2.8E-11 6.2E-16 127.4 14.1 127 840-1040 33-160 (177)
123 cd04047 C2B_Copine C2 domain s 99.3 1.7E-11 3.7E-16 118.5 10.8 94 351-462 4-108 (110)
124 PF00168 C2: C2 domain; Inter 99.2 2.7E-11 5.9E-16 109.7 9.2 81 349-444 1-85 (85)
125 KOG1011 Neurotransmitter relea 99.2 1.7E-11 3.6E-16 142.4 8.4 116 348-482 296-423 (1283)
126 KOG2059 Ras GTPase-activating 99.2 2.1E-11 4.5E-16 144.7 9.1 126 348-489 6-131 (800)
127 PRK12452 cardiolipin synthetas 99.2 6.1E-11 1.3E-15 143.7 12.4 152 515-759 329-480 (509)
128 PF13091 PLDc_2: PLD-like doma 99.2 1E-10 2.2E-15 115.1 10.0 114 845-1039 1-114 (126)
129 KOG3603 Predicted phospholipas 99.2 1.6E-08 3.5E-13 115.8 28.5 150 546-761 73-227 (456)
130 cd00030 C2 C2 domain. The C2 d 99.1 2.3E-10 4.9E-15 104.9 10.5 99 349-462 1-102 (102)
131 smart00239 C2 Protein kinase C 99.1 2.8E-10 6.2E-15 105.1 10.8 93 348-455 1-97 (101)
132 COG5038 Ca2+-dependent lipid-b 99.1 4.3E-10 9.4E-15 140.2 11.8 132 346-496 435-570 (1227)
133 PF13091 PLDc_2: PLD-like doma 99.0 1.2E-09 2.7E-14 107.3 11.1 125 550-756 1-126 (126)
134 COG5038 Ca2+-dependent lipid-b 99.0 5.6E-10 1.2E-14 139.2 10.2 129 339-484 1032-1162(1227)
135 KOG1328 Synaptic vesicle prote 99.0 3.6E-11 7.8E-16 141.9 -1.0 150 317-489 90-307 (1103)
136 KOG1028 Ca2+-dependent phospho 98.9 2.2E-09 4.8E-14 127.2 8.4 109 346-471 297-413 (421)
137 PRK11263 cardiolipin synthase 98.9 1.9E-08 4.1E-13 119.1 14.3 133 840-1038 18-154 (411)
138 cd08374 C2F_Ferlin C2 domain s 98.9 1.1E-08 2.5E-13 102.7 10.2 93 349-454 2-125 (133)
139 PRK01642 cls cardiolipin synth 98.8 1.5E-08 3.3E-13 122.6 13.1 136 545-759 318-454 (483)
140 PRK05443 polyphosphate kinase; 98.8 2.5E-08 5.4E-13 124.0 13.1 119 843-1040 351-481 (691)
141 cd08689 C2_fungal_Pkc1p C2 dom 98.8 1.4E-08 3E-13 96.9 8.4 88 349-452 1-88 (109)
142 KOG1031 Predicted Ca2+-depende 98.8 1.2E-08 2.6E-13 118.1 8.3 120 345-482 1-135 (1169)
143 smart00149 PLCYc Phospholipase 98.7 2.2E-09 4.8E-14 104.7 -1.5 58 286-350 41-101 (115)
144 KOG3603 Predicted phospholipas 98.7 2.1E-07 4.5E-12 106.9 13.7 156 546-760 277-440 (456)
145 PF00614 PLDc: Phospholipase D 98.6 8.3E-09 1.8E-13 75.7 0.8 27 662-696 2-28 (28)
146 PRK09428 pssA phosphatidylseri 98.6 3.4E-07 7.3E-12 109.5 14.8 137 840-1039 35-179 (451)
147 cd08630 PI-PLCc_delta3 Catalyt 98.6 4.9E-09 1.1E-13 115.2 -0.9 57 286-349 196-255 (258)
148 cd08595 PI-PLCc_zeta Catalytic 98.6 6.1E-09 1.3E-13 114.3 -0.4 57 286-349 195-254 (257)
149 cd08633 PI-PLCc_eta2 Catalytic 98.6 6E-09 1.3E-13 113.9 -0.5 58 285-349 191-251 (254)
150 cd08592 PI-PLCc_gamma Catalyti 98.6 5.4E-09 1.2E-13 113.0 -1.0 57 286-349 167-226 (229)
151 cd08596 PI-PLCc_epsilon Cataly 98.6 5.9E-09 1.3E-13 114.2 -1.2 57 286-349 192-251 (254)
152 cd08597 PI-PLCc_PRIP_metazoa C 98.6 6.9E-09 1.5E-13 114.4 -0.7 57 286-349 198-257 (260)
153 cd08629 PI-PLCc_delta1 Catalyt 98.6 8.8E-09 1.9E-13 113.0 0.1 57 286-349 196-255 (258)
154 cd08627 PI-PLCc_gamma1 Catalyt 98.6 1E-08 2.2E-13 110.5 0.5 56 287-349 168-226 (229)
155 cd08625 PI-PLCc_beta3 Catalyti 98.6 9.3E-09 2E-13 113.4 -0.1 57 286-349 196-255 (258)
156 cd08628 PI-PLCc_gamma2 Catalyt 98.6 7.8E-09 1.7E-13 113.4 -0.8 57 286-349 192-251 (254)
157 cd08624 PI-PLCc_beta2 Catalyti 98.6 8.4E-09 1.8E-13 113.4 -0.8 57 286-349 199-258 (261)
158 cd08631 PI-PLCc_delta4 Catalyt 98.6 8.2E-09 1.8E-13 113.4 -0.9 57 286-349 196-255 (258)
159 cd08632 PI-PLCc_eta1 Catalytic 98.6 8.7E-09 1.9E-13 112.4 -1.1 57 286-349 191-250 (253)
160 cd08594 PI-PLCc_eta Catalytic 98.6 1.2E-08 2.5E-13 110.1 -0.3 57 286-349 165-224 (227)
161 cd08626 PI-PLCc_beta4 Catalyti 98.5 1.2E-08 2.6E-13 112.1 -0.4 58 286-350 195-255 (257)
162 cd08623 PI-PLCc_beta1 Catalyti 98.5 1.5E-08 3.2E-13 111.4 -0.5 57 286-349 196-255 (258)
163 cd08599 PI-PLCc_plant Catalyti 98.5 2.1E-08 4.4E-13 108.8 -0.7 57 286-349 166-225 (228)
164 cd08591 PI-PLCc_beta Catalytic 98.5 2.5E-08 5.5E-13 109.5 -0.5 57 286-349 195-254 (257)
165 cd08598 PI-PLC1c_yeast Catalyt 98.5 1.9E-08 4E-13 109.2 -1.6 57 286-349 169-228 (231)
166 cd08558 PI-PLCc_eukaryota Cata 98.4 2.9E-08 6.4E-13 107.3 -0.7 57 286-349 164-223 (226)
167 cd08593 PI-PLCc_delta Catalyti 98.4 3.2E-08 7E-13 109.1 -0.5 57 286-349 195-254 (257)
168 smart00155 PLDc Phospholipase 98.4 3.4E-07 7.3E-12 67.4 3.4 26 996-1021 3-28 (28)
169 KOG1328 Synaptic vesicle prote 98.3 2.1E-07 4.5E-12 110.9 2.0 89 348-451 948-1048(1103)
170 PF00387 PI-PLC-Y: Phosphatidy 98.2 3.8E-08 8.3E-13 96.7 -5.9 54 287-347 44-100 (118)
171 COG1502 Cls Phosphatidylserine 98.2 8.7E-06 1.9E-10 97.3 11.4 135 548-759 273-409 (438)
172 KOG2059 Ras GTPase-activating 98.0 8.8E-06 1.9E-10 98.0 7.1 105 383-487 151-280 (800)
173 PF00614 PLDc: Phospholipase D 98.0 3.2E-06 6.9E-11 62.2 1.7 26 996-1021 3-28 (28)
174 KOG3964 Phosphatidylglycerolph 97.8 0.0011 2.4E-08 76.0 17.9 132 543-700 37-173 (469)
175 cd08683 C2_C2cd3 C2 domain fou 97.6 9E-05 2E-09 73.3 6.3 112 349-462 1-143 (143)
176 KOG1013 Synaptic vesicle prote 97.5 2.7E-05 5.8E-10 87.2 1.1 126 348-489 94-235 (362)
177 TIGR03705 poly_P_kin polyphosp 97.5 0.00085 1.8E-08 83.9 13.5 118 843-1039 342-471 (672)
178 KOG1011 Neurotransmitter relea 97.5 0.00023 5E-09 84.4 7.6 100 348-463 1126-1236(1283)
179 PF13918 PLDc_3: PLD-like doma 97.4 0.00091 2E-08 70.3 10.7 57 546-604 83-140 (177)
180 PLN02866 phospholipase D 97.4 0.0005 1.1E-08 87.7 9.7 61 840-907 344-404 (1068)
181 KOG0905 Phosphoinositide 3-kin 97.3 0.00013 2.7E-09 91.8 3.8 106 343-463 1520-1634(1639)
182 KOG1326 Membrane-associated pr 97.3 0.00013 2.7E-09 91.1 3.2 120 349-492 615-738 (1105)
183 PLN02964 phosphatidylserine de 97.3 0.00022 4.8E-09 88.3 5.0 102 345-468 52-157 (644)
184 KOG1013 Synaptic vesicle prote 97.1 0.00047 1E-08 77.5 4.9 98 348-462 234-339 (362)
185 smart00155 PLDc Phospholipase 97.0 0.00053 1.1E-08 50.5 3.0 25 663-695 3-27 (28)
186 PF07894 DUF1669: Protein of u 97.0 0.0035 7.7E-08 70.4 10.3 160 515-756 119-278 (284)
187 KOG2060 Rab3 effector RIM1 and 96.7 0.0017 3.7E-08 74.2 5.0 127 328-468 247-383 (405)
188 PF13090 PP_kinase_C: Polyphos 96.4 0.33 7.1E-06 56.2 20.5 137 545-754 18-160 (352)
189 PF07894 DUF1669: Protein of u 95.9 0.032 6.9E-07 62.9 9.4 131 840-1036 134-264 (284)
190 KOG1326 Membrane-associated pr 95.8 0.0031 6.7E-08 79.2 1.1 99 349-464 208-317 (1105)
191 KOG1327 Copine [Signal transdu 95.8 0.018 3.9E-07 69.5 7.2 96 355-467 144-250 (529)
192 COG0855 Ppk Polyphosphate kina 95.7 0.85 1.8E-05 56.3 20.9 96 541-675 348-448 (696)
193 cd08684 C2A_Tac2-N C2 domain f 95.5 0.011 2.4E-07 55.1 3.1 95 351-461 3-102 (103)
194 PF13918 PLDc_3: PLD-like doma 95.4 0.13 2.9E-06 54.4 11.3 55 842-910 84-144 (177)
195 KOG3837 Uncharacterized conser 95.4 0.015 3.2E-07 67.3 4.1 118 348-483 368-503 (523)
196 PLN02352 phospholipase D epsil 95.3 0.062 1.3E-06 67.8 9.6 61 544-604 452-519 (758)
197 PF12416 DUF3668: Cep120 prote 95.0 0.21 4.4E-06 58.3 12.2 120 349-487 2-136 (340)
198 cd00137 PI-PLCc Catalytic doma 95.0 0.0046 9.9E-08 70.1 -1.4 56 289-348 203-270 (274)
199 PF10358 NT-C2: N-terminal C2 94.9 0.42 9.1E-06 48.4 12.8 118 349-489 9-141 (143)
200 cd08398 C2_PI3K_class_I_alpha 94.8 0.16 3.5E-06 53.0 9.5 108 342-485 3-124 (158)
201 KOG1329 Phospholipase D1 [Lipi 93.9 0.22 4.7E-06 63.2 9.7 63 537-604 558-627 (887)
202 PF11495 Regulator_TrmB: Archa 93.4 0.14 3E-06 56.7 6.3 49 545-606 10-58 (233)
203 COG3886 Predicted HKD family n 92.9 1.3 2.8E-05 47.3 12.0 140 545-758 39-179 (198)
204 cd08693 C2_PI3K_class_I_beta_d 92.9 0.53 1.2E-05 49.9 9.4 75 343-434 4-87 (173)
205 PLN02270 phospholipase D alpha 92.7 0.52 1.1E-05 60.1 10.5 62 543-604 497-569 (808)
206 PLN03008 Phospholipase D delta 92.5 0.54 1.2E-05 60.1 10.2 61 544-604 566-633 (868)
207 KOG1452 Predicted Rho GTPase-a 91.2 0.39 8.4E-06 54.2 6.1 122 341-485 45-169 (442)
208 cd04012 C2A_PI3K_class_II C2 d 90.6 2.2 4.9E-05 45.0 11.0 88 345-447 6-116 (171)
209 cd08399 C2_PI3K_class_I_gamma 90.1 2.3 4.9E-05 45.4 10.5 126 342-487 5-142 (178)
210 cd08380 C2_PI3K_like C2 domain 90.0 1.6 3.5E-05 45.2 9.2 86 347-448 8-105 (156)
211 PF15627 CEP76-C2: CEP76 C2 do 88.6 2.7 5.9E-05 43.8 9.5 126 349-486 11-153 (156)
212 cd08397 C2_PI3K_class_III C2 d 88.5 1.4 3.1E-05 46.1 7.5 65 383-447 30-104 (159)
213 cd08687 C2_PKN-like C2 domain 87.7 3 6.5E-05 39.7 8.2 84 383-482 9-92 (98)
214 PF15625 CC2D2AN-C2: CC2D2A N- 84.2 4.2 9E-05 42.9 8.4 69 383-451 37-107 (168)
215 PF13090 PP_kinase_C: Polyphos 82.0 3.9 8.4E-05 47.7 7.6 94 885-1040 51-151 (352)
216 PF09565 RE_NgoFVII: NgoFVII r 81.2 6.6 0.00014 45.2 9.1 41 996-1038 79-124 (296)
217 KOG1327 Copine [Signal transdu 80.4 3.8 8.2E-05 50.2 7.0 84 395-481 41-130 (529)
218 PF14429 DOCK-C2: C2 domain in 79.9 5.3 0.00012 42.6 7.4 53 397-449 61-120 (184)
219 cd08695 C2_Dock-B C2 domains f 78.9 16 0.00034 39.5 10.4 37 397-433 55-94 (189)
220 PF00792 PI3K_C2: Phosphoinosi 76.9 9 0.00019 39.1 7.7 66 384-449 3-84 (142)
221 smart00142 PI3K_C2 Phosphoinos 75.1 14 0.00031 35.5 8.1 51 383-433 32-91 (100)
222 PF11618 DUF3250: Protein of u 74.9 15 0.00032 36.2 8.2 94 386-483 2-105 (107)
223 COG0855 Ppk Polyphosphate kina 74.5 9 0.00019 47.8 8.0 41 997-1039 437-484 (696)
224 cd08694 C2_Dock-A C2 domains f 73.4 17 0.00037 39.4 9.0 51 397-447 55-113 (196)
225 COG3886 Predicted HKD family n 73.4 35 0.00076 36.8 11.0 52 839-909 38-90 (198)
226 KOG4269 Rac GTPase-activating 72.9 8.2 0.00018 49.4 7.2 120 341-489 753-888 (1112)
227 KOG3964 Phosphatidylglycerolph 65.7 7.4 0.00016 45.8 4.5 55 840-910 39-93 (469)
228 cd08679 C2_DOCK180_related C2 64.2 18 0.0004 38.4 6.9 51 399-449 56-115 (178)
229 KOG0694 Serine/threonine prote 64.1 2.6 5.7E-05 52.6 0.6 92 383-483 28-121 (694)
230 cd08696 C2_Dock-C C2 domains f 62.7 25 0.00053 37.8 7.5 39 396-434 55-96 (179)
231 PF06087 Tyr-DNA_phospho: Tyro 61.7 5.3 0.00011 48.6 2.6 42 993-1035 344-402 (443)
232 cd08697 C2_Dock-D C2 domains f 50.9 58 0.0013 35.2 7.9 39 396-434 57-98 (185)
233 PF11495 Regulator_TrmB: Archa 48.7 33 0.00071 38.0 5.9 50 839-908 9-58 (233)
234 KOG3543 Ca2+-dependent activat 46.4 96 0.0021 38.6 9.4 113 348-482 342-458 (1218)
235 KOG1924 RhoA GTPase effector D 46.3 40 0.00087 43.0 6.5 13 439-451 707-719 (1102)
236 KOG2236 Uncharacterized conser 46.1 32 0.0007 41.4 5.5 12 47-58 453-464 (483)
237 PTZ00447 apical membrane antig 44.0 1.4E+02 0.003 35.0 9.8 110 348-484 59-172 (508)
238 cd05137 RasGAP_CLA2_BUD2 CLA2/ 40.5 29 0.00064 41.7 4.2 45 439-485 1-46 (395)
239 PF06219 DUF1005: Protein of u 39.7 2.8E+02 0.0061 33.6 11.6 100 383-484 36-168 (460)
240 KOG0260 RNA polymerase II, lar 37.7 1.6E+02 0.0035 39.6 10.0 6 228-233 1455-1460(1605)
241 PF06415 iPGM_N: BPG-independe 34.0 94 0.002 34.6 6.4 49 548-604 14-67 (223)
242 KOG0119 Splicing factor 1/bran 31.8 1.7E+02 0.0038 35.8 8.5 24 114-139 466-489 (554)
243 KOG0917 Uncharacterized conser 30.6 2.7E+02 0.0059 31.7 9.1 32 85-116 246-277 (338)
244 PF07615 Ykof: YKOF-related Fa 27.3 1.6E+02 0.0034 27.5 5.8 69 514-604 3-72 (81)
245 KOG4849 mRNA cleavage factor I 26.4 1.3E+02 0.0029 35.1 6.0 21 83-103 314-334 (498)
246 PF06087 Tyr-DNA_phospho: Tyro 22.7 58 0.0012 39.8 2.6 37 997-1036 101-141 (443)
247 KOG1120 Fe-S cluster biosynthe 22.0 36 0.00079 34.3 0.6 21 172-192 102-122 (134)
No 1
>PLN03008 Phospholipase D delta
Probab=100.00 E-value=8.2e-178 Score=1585.81 Aligned_cols=803 Identities=57% Similarity=0.995 Sum_probs=731.4
Q ss_pred CCCcceeeeceEEEEEEEEeeCCCCCCCCCccccccccc---------------------------cCCCCCCCCcEEEE
Q 001130 337 KGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNS---------------------------QMNTKITSDPYVTI 389 (1148)
Q Consensus 337 ~~~~~~~Ll~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k---------------------------~~~~~~~sDPYV~V 389 (1148)
+-++.+.||||+|.|||++|++|++||++.+++.++|.. ++.+++++||||+|
T Consensus 4 ~~~~~~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I 83 (868)
T PLN03008 4 KVSEDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTV 83 (868)
T ss_pred ccccceEEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEE
Confidence 456788999999999999999999999877755544430 12236679999999
Q ss_pred EECCEEEEeeeeeeCCCCCeeceEEEEEecCCCceEEEEEEEccCCCCcceeeEEEeceeeccCCcccceeeeccCCCCC
Q 001130 390 AVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKP 469 (1148)
Q Consensus 390 ~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~~~L~~~V~D~D~~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~ 469 (1148)
.+++++++||+|++++.||+|||+|+|.|+++...|.|+|+|+|.+++++||++.|||++|..|...+.|++|++.+|++
T Consensus 84 ~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp 163 (868)
T PLN03008 84 VVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKP 163 (868)
T ss_pred EECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCC
Confidence 99998888999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEEEEecccccccccCCCCCCCCCCCCCCCCCccccCCeeEecccccCCCCCCCceeecCCCccchhHHHHH
Q 001130 470 CKPGATLTLSIQYTPMERLSFYHRGVGEGPDYNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYD 549 (1148)
Q Consensus 470 ~~~~g~L~L~l~f~p~~~~~~y~~Gv~~~~~~~gvp~t~~P~r~Gn~V~ly~dg~~~~~~~p~i~l~~g~~y~~~~~f~a 549 (1148)
++.+++|+|+|+|+|++++..|.+||+++++|.|||.||||+|+||+||||||+|++|+++|.|.|++|+.|.+++||++
T Consensus 164 ~k~~~kl~v~lqf~pv~~~~~~~~gv~~~~~~~gvp~t~Fp~r~g~~VtlYqdAhv~d~~~p~i~l~~g~~y~~~rcwed 243 (868)
T PLN03008 164 PKAETAIFIDMKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWED 243 (868)
T ss_pred CCCCcEEEEEEEEEEccccccccccccCCcCCCCCCCccccCCCCCEeEEeccCCCCCCCCCccccCCCccccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccceEEEEeeccceeeEEeCCC--CchHHHHHHHHHHhhhcCCcEEEEEecCCCcccccccccccccccccH
Q 001130 550 ICNAISQAQRLIYITGWSVWHKVKLVRDAS--PALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDE 627 (1148)
Q Consensus 550 l~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~--~~~g~~L~dlL~~kA~rGVkVrILVwD~~~s~~~~g~k~~g~m~t~~~ 627 (1148)
|++||++||++|||++||++|+++|+|++. ...+.+|++||++||+|||+|+|||||+.+|...++++..|+|.|+|+
T Consensus 244 i~~AI~~Ak~~IyI~gWsl~~ei~L~R~~~~~~~~~~~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~~~~~~g~m~thde 323 (868)
T PLN03008 244 ICYAISEAHHMIYIVGWSIFHKIKLVRETKVPRDKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGTHDE 323 (868)
T ss_pred HHHHHHhhhheEEEeceeecceeEEecCCCCCCCCCccHHHHHHHHHHCCCEEEEEEecccccccccccccccccccccH
Confidence 999999999999999999999999999863 224689999999999999999999999999887777888999999999
Q ss_pred HHHHHhhcCCcEEEEccCcccccccccccc-----------cccccccccceEEEEcCCCCCCCccEEEEECCccCCCCC
Q 001130 628 ETRRVFKHSSVKVLLCPRIAGKRHSWAKQK-----------EVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGR 696 (1148)
Q Consensus 628 et~~~l~~~gV~v~l~p~~~~~~~~~~~~~-----------~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgR 696 (1148)
+++++|+|++|.|.+||+..+...+|+++. .++++|+||||+||||++.++++|+++|||||+|||+||
T Consensus 324 et~~~f~h~~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~~~r~~vAFvGGiDLc~gR 403 (868)
T PLN03008 324 ETRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDGR 403 (868)
T ss_pred HHHHhhcCCCeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCCCccceEEEEcceeccCCc
Confidence 999999999999999999877777777652 456789999999999998777789999999999999999
Q ss_pred CCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCHHHHHHHHHHHHHHHhhcCCCC----cccc-CCc
Q 001130 697 YDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHG----IKKL-KSG 771 (1148)
Q Consensus 697 wDt~~H~l~d~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GPaa~Dl~~~F~qrWn~~t~~~~----~~~l-~~~ 771 (1148)
|||+.|++++++++.+++||+|+++.+ ..+.|++||||+|++|+||||++|+.+|++||+++++... .++. ...
T Consensus 404 wDT~~H~l~~~l~t~~~~D~~np~~~~-~~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~aTg~~~~~~~~k~~~~~~ 482 (868)
T PLN03008 404 YDTPEHRILHDLDTVFKDDFHNPTFPA-GTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQ 482 (868)
T ss_pred cCCcCCCccccccccccccccCccccC-CCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHHhhCccccccccccccccc
Confidence 999999999999999999999998754 3457899999999999999999999999999999987431 1111 123
Q ss_pred hhhhhhhccCCCccCCCC-------------CC---CcccCCCCCceEEEEeecCCcccccCCCChhhhcccccccCccc
Q 001130 772 DDALLRIERIPGIIGISD-------------AP---SVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNV 835 (1148)
Q Consensus 772 ~~~l~~~~~~p~~~~~~~-------------~p---~~~~~~~~~~~vQvlRS~~~~s~~~~P~~P~~~~~~~l~~g~~~ 835 (1148)
++.++++++++.++.+.. .+ .....++++|.+|+|||++.|++++||+.+.++..++++|||+.
T Consensus 483 ~d~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~w~vQifRSId~~sa~g~P~~~~~~~~~~l~~gk~~ 562 (868)
T PLN03008 483 DDALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAKRL 562 (868)
T ss_pred cchhcchhhcccccCCCccccccccccccCCCCccCccccCCCCccccceeeecCchhhcCCCCCcchhhhhcccccccc
Confidence 566667777665543210 00 01135678899999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHhhccEEEEEEeEeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCC
Q 001130 836 LIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPT 915 (1148)
Q Consensus 836 ~~e~sI~~Ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p~ 915 (1148)
.+|+||++||++||++||||||||||||+++++.|+++++.++.|+|+++|+++|++|++++++|+|+||+|+||||++.
T Consensus 563 ~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IViP~~peG~~~ 642 (868)
T PLN03008 563 VVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVIPLWPEGDPK 642 (868)
T ss_pred chhhhHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEECCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHHHHHHHhHhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCCcc
Q 001130 916 GAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFM 995 (1148)
Q Consensus 916 ~~s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~L~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 995 (1148)
+++.|.|++|+++||+|||.+++++|+++|.+. +|.+|++|||||+|+.... ..++..++....++++|+++
T Consensus 643 sg~vq~Il~wq~~TM~~~~~~I~~~L~~~~~d~--~p~dyl~fy~L~~~e~~~~------~~~~~~~~~~~~a~~~rr~~ 714 (868)
T PLN03008 643 SGPVQEILYWQSQTMQMMYDVIAKELKAVQSDA--HPLDYLNFYCLGKREQLPD------DMPATNGSVVSDSYNFQRFM 714 (868)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--CccCEEEEecccccccccC------CCCCCCCchhhhhhhcccee
Confidence 999999999999999999999999999988654 5889999999999987632 12334556667788999999
Q ss_pred eeeeeEEEEEeCeEEEEcccccccccCCCCCCcceEEEEeCcchhhhhccCCCCchhHHHHHHHHHHHhCCCccccCCCc
Q 001130 996 IYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYTWARMKRHPYGQIYGYRMSLWAEHLGYIEDCFGQPE 1075 (1148)
Q Consensus 996 IYVHSKlmIVDD~~viIGSANLN~RSm~G~~DsEiav~i~dp~~~~~~~~~~~~g~~~~lR~~Lw~EHlG~~~~~f~~p~ 1075 (1148)
||||||+|||||++++|||||||+|||.|+||+||++.++++.++|+.+.+.++|+||+||++||+||||+.++.|.+|+
T Consensus 715 IYvHsK~~ivDd~~~~iGSaN~n~RS~~~~Rd~E~~~~~~~~~~~~~~~~~~~rg~I~g~R~sLwaEHLG~~~~~~~~p~ 794 (868)
T PLN03008 715 IYVHAKGMIVDDEYVLMGSANINQRSMAGTKDTEIAMGAYQPNHTWAHKGRHPRGQVYGYRMSLWAEHLGKTGDEFVEPS 794 (868)
T ss_pred EEEeeeEEEECCCEEEEeccccCHhhccCCCCceEeEEeccccccccccCcchhhHHHHHHHHHHHHHhCCCHHHccCCC
Confidence 99999999999999999999999999999999999999999999987777789999999999999999999999999999
Q ss_pred chhHHHHHhhhhhhhhhhhhhhhhcccccccccCcceeCCCCCccCCCCCCCCCCCCCccccccC-CCCcCCCC
Q 001130 1076 TLECVRKVRSVGENNWQQFAADDQSEMRSHLIKYPVEVDRKGKVRPIPGYETFPDVGGNIVGSFF-AIQENLTI 1148 (1148)
Q Consensus 1076 s~~~~~~v~~~~~~nw~~~a~~~~~~~~ghL~~~p~~~~~~g~~~~~~g~~~fpd~~~~i~g~~~-~~~~~~~~ 1148 (1148)
+++||++||++|++||++|+++++++|+|||++||+.|+.+|+|++|||+|+||||+|+|+|++. .||++|||
T Consensus 795 s~ecv~~vn~~a~~~w~~y~~~~~~~~~ghl~~yp~~v~~~g~v~~l~g~~~fpd~~~~v~g~~~~~lp~~ltt 868 (868)
T PLN03008 795 DLECLKKVNTISEENWKRFIDPKFSELQGHLIKYPLQVDVDGKVSPLPDYETFPDVGGKIIGAHSMALPDTLTT 868 (868)
T ss_pred CHHHHHHHHHHHHHHHHHhhccccccCCcccccCceEecCCCcEeeCCCCCcCCCCCCceeccccccCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999996 89999997
No 2
>PLN02270 phospholipase D alpha
Probab=100.00 E-value=9.1e-168 Score=1501.59 Aligned_cols=786 Identities=46% Similarity=0.841 Sum_probs=701.4
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCccccccccc----cCCCCCCCCcEEEEEECCEEEEeeeeeeC-CCCCeeceEEEEE
Q 001130 343 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNS----QMNTKITSDPYVTIAVAGAVVGRTFVISN-SEDPVWQQHFYVP 417 (1148)
Q Consensus 343 ~Ll~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k----~~~~~~~sDPYV~V~l~g~~~~RTkvi~n-t~NPvWNE~F~f~ 417 (1148)
.||||+|+|||++|++|++++. .+.+.+++.. ....++++||||+|.+++++++||+|+.| ..||+|||+|.++
T Consensus 4 ~llhg~l~~~i~ea~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~ 82 (808)
T PLN02270 4 ILLHGTLHATIYEVDKLHSGGG-PGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIY 82 (808)
T ss_pred eeeecceEEEEEEcccCCCcch-hhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEe
Confidence 4899999999999999998654 2223322221 11235679999999999999999999998 4799999999999
Q ss_pred ecCCCceEEEEEEEccCCCCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEEEecccccccccCCCCC
Q 001130 418 VAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLSFYHRGVGE 497 (1148)
Q Consensus 418 v~~~~~~L~~~V~D~D~~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~p~~~~~~y~~Gv~~ 497 (1148)
|+|..+.|.|+|||.|.++..+||.+.||+++|.+|..+++||+|++.+||+++++.+|||+|+|+|++.+..|.+||++
T Consensus 83 ~ah~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~~~~~~gv~~ 162 (808)
T PLN02270 83 CAHMASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKDRNWGRGIRS 162 (808)
T ss_pred eccCcceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcccCcchhcccCC
Confidence 99999999999999999999999999999999999999999999999999999998999999999999999999999965
Q ss_pred CCCCCCCCCCCCccccCCeeEecccccCCCCCCCceeecCCCccchhHHHHHHHHHHHHhccceEEEEeeccceeeEEeC
Q 001130 498 GPDYNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRD 577 (1148)
Q Consensus 498 ~~~~~gvp~t~~P~r~Gn~V~ly~dg~~~~~~~p~i~l~~g~~y~~~~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd 577 (1148)
++|.|||.||||+|+||+||||||+|++|+++|.|.|++|+.|.+++||++|++||++||++|||++|+|+++|+|+|+
T Consensus 163 -~~~~gvp~t~f~~r~g~~vtlyqdahv~~~~~p~i~l~~g~~~~~~~cwedi~~AI~~Ar~~IyI~GW~~d~~i~LvRd 241 (808)
T PLN02270 163 -AKFPGVPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDAITNAKHLIYITGWSVYTEISLVRD 241 (808)
T ss_pred -cCcCCCCCcccccCCCCeeEEeccccCCCCCCCccccCCCcccchhhhHHHHHHHHHhhhcEEEEEEeecCCCceEecC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC---chHHHHHHHHHHhhhcCCcEEEEEecCCCcccccccccccccccccHHHHHHhhcCCcEEEEccCccccccccc
Q 001130 578 ASP---ALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWA 654 (1148)
Q Consensus 578 ~~~---~~g~~L~dlL~~kA~rGVkVrILVwD~~~s~~~~g~k~~g~m~t~~~et~~~l~~~gV~v~l~p~~~~~~~~~~ 654 (1148)
+.. +...+|+++|++||++||+|+||+||+.++... ++..|+|.|++++++++|++.+|+|+++|+......+++
T Consensus 242 ~~~p~~~~~~~LGeLLk~KA~eGV~V~iLvWDd~ts~~~--~k~~g~m~thd~~t~~~f~~~~V~~~L~~r~P~~~~~~~ 319 (808)
T PLN02270 242 SRRPKPGGDVTIGELLKKKASEGVRVLLLVWDDRTSVDL--LKKDGLMATHDEETENFFRGTDVHCILCPRNPDDGGSIV 319 (808)
T ss_pred CCCCCCCCcchHHHHHHHHhcCCCEEEEEEEcCcccchh--hccccccccCHHHHHHHhccCCceEEEcCCCccccccee
Confidence 532 245799999999999999999999999887644 356789999999999999999999999998776556676
Q ss_pred ccccccccccccceEEEEcCCCCC---CCccEEEEECCccCCCCCCCCCCCCcccccccccCCCCCCCcccCC--CCCCC
Q 001130 655 KQKEVGTIYTHHQKTVIVDADAGY---NRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGN--TTGCP 729 (1148)
Q Consensus 655 ~~~~~~~~~~HHQKiVVVD~~~~~---~~r~~vAFVGGiDL~dgRwDt~~H~l~d~l~~~~~~Dy~np~~~~~--~~~~p 729 (1148)
++..+++.++||||+||||++.++ ++|+++|||||+|||++||||++|++|+++++.|++||+||.|.+. ..++|
T Consensus 320 ~~~~~~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~GRWDT~~H~lf~~Ldt~h~~Df~~p~~~~~~~~~g~P 399 (808)
T PLN02270 320 QDLQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFTGASITKGGP 399 (808)
T ss_pred eccccccccccceeEEEEccCCccccccccceEEEEcceeccCCcccCccccccccccccccccccCcccccccccCCCC
Confidence 666677889999999999997543 4799999999999999999999999999999999999999998763 46789
Q ss_pred CCCeeeeeeEEcCHHHHHHHHHHHHHHHhhcCCCCccccCCchhhhhhhccCCCccCCCCCCCcccCCCCCceEEEEeec
Q 001130 730 REPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSI 809 (1148)
Q Consensus 730 r~PWHDv~vrI~GPaa~Dl~~~F~qrWn~~t~~~~~~~l~~~~~~l~~~~~~p~~~~~~~~p~~~~~~~~~~~vQvlRS~ 809 (1148)
|+||||+||+|+||+|++|+.+|++||+.++++... ....++..+..+. .+...+.+.++|+||+|||+
T Consensus 400 r~PWhDvh~rVeGPaa~dL~~~F~~rW~~atg~~ll----------~~~~~~~~~~~P~-~~~~~p~d~~~w~VQvfRSi 468 (808)
T PLN02270 400 REPWHDIHSRLEGPIAWDVLFNFEQRWSKQGGKDIL----------VQLRELEDVIIPP-SPVMFPDDHEVWNVQLFRSI 468 (808)
T ss_pred CCCeEEEEEEEECHHHHHHHHHHHHHHHhhcCccch----------hhhcccccccCCC-CcccCCCcCCccccceeecc
Confidence 999999999999999999999999999998875311 1111111111111 11112345678999999999
Q ss_pred CCcccccCCCChhhhcccccccCcccchhhHHHHHHHHHHHhhccEEEEEEeEeecCCCCcccc----cccCcCCccHHH
Q 001130 810 DSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSY----RDLGANNLIPME 885 (1148)
Q Consensus 810 ~~~s~~~~P~~P~~~~~~~l~~g~~~~~e~sI~~Ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~----~~~g~~n~I~~~ 885 (1148)
+.+++++||+.|.++..+++++|++..++++|+.+|++||++||||||||||||+++++.|..+ ++.|+.|+||++
T Consensus 469 d~g~a~~~P~~~~~~~~~~lv~g~~~~~~rsI~~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~e 548 (808)
T PLN02270 469 DGGAAFGFPETPEAAAEAGLVSGKDNIIDRSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKE 548 (808)
T ss_pred cchhhccCCCCcchhhhcceeccCCCchhhHHHHHHHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchHH
Confidence 9999999999999888889999998888999999999999999999999999999999999765 788999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEEecCCCCCCCCCcchhHHHHHHHHhHhhHHHHHHHHHHHcCCceeecccccccccccCCcc
Q 001130 886 IALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNRE 965 (1148)
Q Consensus 886 ial~Ia~ai~a~rgv~V~IVlP~~Peg~p~~~s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~L~~r~ 965 (1148)
|+++|+++|+++++|+|+||+|+||||.+++.+.|.||+||++||+||+.+++++|+++|+.. +|++||+||||+|||
T Consensus 549 l~~kI~~ri~~~e~f~VyIViP~~peG~~e~~~vq~il~wq~~TM~~~~~~I~~~Lk~~g~~~--dp~dyL~ff~L~nre 626 (808)
T PLN02270 549 LSLKIVSKIEAGEKFTVYVVVPMWPEGIPESGSVQAILDWQRRTMEMMYKDVIQALRAKGLEE--DPRNYLTFFCLGNRE 626 (808)
T ss_pred HHHHHHHHHhCCCCCEEEEEECCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCccC--CccceEEEEeccccc
Confidence 999999999999999999999999999999999999999999999999999999999999753 688999999999999
Q ss_pred cccccCCCCCCCCCCCCchhhhhcccCCcceeeeeEEEEEeCeEEEEcccccccccCCCCCCcceEEEEeCcchhhhhcc
Q 001130 966 VIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYTWARMK 1045 (1148)
Q Consensus 966 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~IYVHSKlmIVDD~~viIGSANLN~RSm~G~~DsEiav~i~dp~~~~~~~~ 1045 (1148)
.....+..+ ...+.+++++..+++.++++||||||+|||||++++|||||||+|||.|++||||+|++++|.++.+.
T Consensus 627 ~~~~g~~~P-~~~~~~~~~~~~aq~~rr~~I~vH~K~~ivDd~~~~iGSaN~n~rS~~G~rDSEIam~a~qp~~~~~~-- 703 (808)
T PLN02270 627 VKKSGEYEP-SEKPEPDTDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLSTR-- 703 (808)
T ss_pred cccCcccCC-ccCCcccchhhhhhhccceeEEEeeeEEEEcCCEEEEeccccccccccCCccchhhhcccCccccccc--
Confidence 754322111 11233456677888999999999999999999999999999999999999999999999999877543
Q ss_pred CCCCchhHHHHHHHHHHHhCCCccccCCCcchhHHHHHhhhhhhhhhhhhhhhh-cccccccccCcceeCCCCCccCCCC
Q 001130 1046 RHPYGQIYGYRMSLWAEHLGYIEDCFGQPETLECVRKVRSVGENNWQQFAADDQ-SEMRSHLIKYPVEVDRKGKVRPIPG 1124 (1148)
Q Consensus 1046 ~~~~g~~~~lR~~Lw~EHlG~~~~~f~~p~s~~~~~~v~~~~~~nw~~~a~~~~-~~~~ghL~~~p~~~~~~g~~~~~~g 1124 (1148)
..++++|++||++||+||||+.++.|.+|+|++||++||++|++||++|+++++ .+|+|||++||+.|+.+|+|++|||
T Consensus 704 ~~~r~~i~~~R~~Lw~EHLG~~~~~f~~p~s~~cv~~v~~~a~~~w~~y~~~~~~~~~~ghl~~yp~~v~~~g~v~~l~g 783 (808)
T PLN02270 704 QPARGQIHGFRMSLWYEHLGMLDETFLDPESEECIQKVNQIADKYWDLYSSETLEHDLPGHLLRYPIGVASEGDITELPG 783 (808)
T ss_pred cchHHHHHHHHHHHHHHHhCCChhHhhCCCcHHHHHHHHHHHHHHHHHhcccccCCCCCcccccCceEecCCCcEeeCCC
Confidence 367899999999999999999999999999999999999999999999999999 5899999999999999999999999
Q ss_pred CCCCCCCCCccccccC-CCCcCCCC
Q 001130 1125 YETFPDVGGNIVGSFF-AIQENLTI 1148 (1148)
Q Consensus 1125 ~~~fpd~~~~i~g~~~-~~~~~~~~ 1148 (1148)
+|+||||+|+|+|++. .||++|||
T Consensus 784 ~~~fpd~~~~v~g~~~~~~p~~ltt 808 (808)
T PLN02270 784 TEFFPDTKARVLGAKSDYLPPILTT 808 (808)
T ss_pred CCcCCCCCCceeccccccCCccccC
Confidence 9999999999999996 89999997
No 3
>PLN02352 phospholipase D epsilon
Probab=100.00 E-value=3.5e-161 Score=1443.73 Aligned_cols=740 Identities=43% Similarity=0.744 Sum_probs=648.9
Q ss_pred eeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCC
Q 001130 342 VLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1148)
Q Consensus 342 ~~Ll~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~ 421 (1148)
-.||||+|++||++|+-+. +.+.. ...++ ...||||+|.+++++++|| .+..||+|||+|.++|+|.
T Consensus 5 ~~~lhg~l~~~i~~~~~~~--~~~~~--~~~~~------~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~ 71 (758)
T PLN02352 5 QKFFHGTLEATIFDATPYT--PPFPF--NCIFL------NGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHP 71 (758)
T ss_pred ccccccceEEEEEEeeehh--hcccc--ccccc------CCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeee
Confidence 4589999999999999322 11110 00011 1149999999999999999 6677999999999999999
Q ss_pred C-ceEEEEEEEccCCCCcceeeEEEeceeeccCCc-ccceeeeccCCCCCCCCCCcEEEEEEEecccccccccCCCCCCC
Q 001130 422 A-AEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGK-VEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLSFYHRGVGEGP 499 (1148)
Q Consensus 422 ~-~~L~~~V~D~D~~~ddfIG~v~IpL~eL~~G~~-~d~W~pL~~~~Gk~~~~~g~L~L~l~f~p~~~~~~y~~Gv~~~~ 499 (1148)
. +.|.|+|+| +..+||.+.||+++|..|.. +++||+|++.+||+++. .+|+|+|+|+|++++..|.+||++ +
T Consensus 72 ~~~~~~f~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~g~~~-~ 145 (758)
T PLN02352 72 LDSTITITLKT----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-LKLRFMLWFRPAELEPTWCKILEN-G 145 (758)
T ss_pred cCCcEEEEEec----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-CEEEEEEEEEEhhhCcchhhcccC-C
Confidence 8 799999999 58899999999999999966 99999999999999865 799999999999999999999976 6
Q ss_pred CCCCCCCCCCccccCCeeEecccccCCCCCCCceeecCCCccchhHHHHHHHHHHHHhccceEEEEeeccceeeEEeCCC
Q 001130 500 DYNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDAS 579 (1148)
Q Consensus 500 ~~~gvp~t~~P~r~Gn~V~ly~dg~~~~~~~p~i~l~~g~~y~~~~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~ 579 (1148)
+|.|||.||||+|+||+||||||+|++|+++|.|.+ .|.+.+||++|++||++||++|||++|+|+++|+|+|++.
T Consensus 146 ~~~gvp~~~f~~r~g~~v~lyqdah~~~~~~p~i~l----~~~~~~~f~al~eAI~~Ar~sI~I~gW~~d~~i~L~R~~~ 221 (758)
T PLN02352 146 SFQGLRNATFPQRSNCHVILYQDAHHCSTFQPPVDL----CGSPRKLWEDVYKAIEGAKHLIYIAGWSFNPKMVLVRDPE 221 (758)
T ss_pred CcCCcCCcccccCCCCEEEEEecCCCccccCCccee----ecCHHHHHHHHHHHHHhhccEEEEEEEEecCCceeccCcc
Confidence 999999999999999999999999999999999998 5788899999999999999999999999999999999863
Q ss_pred C----chHHHHHHHHHHhhhcCCcEEEEEecCCCcccccccccccccccccHHHHHHhhcCCcEEEEccCcccccccccc
Q 001130 580 P----ALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAK 655 (1148)
Q Consensus 580 ~----~~g~~L~dlL~~kA~rGVkVrILVwD~~~s~~~~g~k~~g~m~t~~~et~~~l~~~gV~v~l~p~~~~~~~~~~~ 655 (1148)
. +.+.+|+++|++||++||+||||+||+.++... ++..|+|.++++++.++|+|.+|+|+++|+...
T Consensus 222 ~~~p~~~g~~LgdLLk~KA~eGV~VrLLvWDd~~s~~~--~~~~g~m~th~~~~~~~f~h~~V~~~l~pr~~~------- 292 (758)
T PLN02352 222 TDIPHARGVKLGELLKRKAEEGVAVRVMLWDDETSLPI--IKNKGVMGTHDEDAFAYFKHTKVVCKLCPRLHK------- 292 (758)
T ss_pred cccccccchHHHHHHHHHHHCCCEEEEEEEcCCCcccc--cccccccccchHHHHhhccCCceEEeecccccc-------
Confidence 1 357999999999999999999999999887644 456788999999999999999999999987532
Q ss_pred cccccccccccceEEEEcCCCCC--CCccEEEEECCccCCCCCCCCCCCCcccccccc-cCCCCCCCcccCC--CCCCCC
Q 001130 656 QKEVGTIYTHHQKTVIVDADAGY--NRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTL-HKDDYHNPTFTGN--TTGCPR 730 (1148)
Q Consensus 656 ~~~~~~~~~HHQKiVVVD~~~~~--~~r~~vAFVGGiDL~dgRwDt~~H~l~d~l~~~-~~~Dy~np~~~~~--~~~~pr 730 (1148)
..++.|+||||+||||+++++ ++|+++|||||||||+|||||++|++++++++. |++||+|+.|.+. ..++||
T Consensus 293 --~~~~~~SHHQK~VVID~~~~~~~~~r~~vAFVGGIDLc~GRwDT~~H~l~d~l~t~~~~~Df~~~~~~g~~~~~g~PR 370 (758)
T PLN02352 293 --KFPTLFAHHQKTITVDTRANDSISEREIMSFVGGLDLCDGRYDTEEHSLFRTLNTESHCQDFYQTSIAGAKLQKGGPR 370 (758)
T ss_pred --ccccccccccceEEEccCCCCCccccceEEEEcceeccCCccCCccCCcccccccccccccccccccccccCCCCCCC
Confidence 245679999999999997543 468889999999999999999999999999875 7799999998863 467899
Q ss_pred CCeeeeeeEEcCHHHHHHHHHHHHHHHhhcCCCCccccCCchhhhhhhccCCCccCCCCCCCcccCCCCCceEEEEeecC
Q 001130 731 EPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSID 810 (1148)
Q Consensus 731 ~PWHDv~vrI~GPaa~Dl~~~F~qrWn~~t~~~~~~~l~~~~~~l~~~~~~p~~~~~~~~p~~~~~~~~~~~vQvlRS~~ 810 (1148)
+||||+||+|+||||+||.+||+||||++++... ++...+++.+...+. ....+.++|.||++||++
T Consensus 371 ~PWHDvh~~V~GpAA~Dv~~~F~qRW~~~~~~~~----------l~p~~~~~~~~~~p~---~~~~~~~~w~VQv~RSid 437 (758)
T PLN02352 371 EPWHDAHACIVGEAAWDVLTNFEQRWTKQCNPSV----------LVPTSSIRNLVHQPG---SSESNNRNWKVQVYRSID 437 (758)
T ss_pred CCcEeEEEEEECHHHHHHHHHHHHHHhhccCccc----------cCCcccccccccCCC---CCcccCCcccceEEEecC
Confidence 9999999999999999999999999999876431 111111111111110 112346789999999999
Q ss_pred CcccccCCCChhhhcccccccCcccchhhHHHHHHHHHHHhhccEEEEEEeEeecCCCCcccccccCcCCccHHHHHHHH
Q 001130 811 STSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKI 890 (1148)
Q Consensus 811 ~~s~~~~P~~P~~~~~~~l~~g~~~~~e~sI~~Ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~I 890 (1148)
.|++.+||.. ..+|+||++||++||++||||||||||||+++++.|+..++.++.|+|+++|+++|
T Consensus 438 ~~sa~~~P~~--------------~~~erSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~kI 503 (758)
T PLN02352 438 HVSASHMPRN--------------LPVERSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKI 503 (758)
T ss_pred ccccccCCCC--------------CchhhHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHHH
Confidence 9999888742 23589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcEEEEEecCCCCCCCCCcchhHHHHHHHHhHhhHHHHHHHHHHHcCCceeecccccccccccCCccccccc
Q 001130 891 ADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQT 970 (1148)
Q Consensus 891 a~ai~a~rgv~V~IVlP~~Peg~p~~~s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~L~~r~~~~~~ 970 (1148)
++|++++++|+|+||+|+||+|.+++.+.|.||+||++||+|||.+|.++|+++|.+. +|++||+|||||||+.....
T Consensus 504 ~~kir~~e~f~V~IViP~~PeG~~e~~~vq~il~wq~~TM~~~y~~I~~~L~~~g~~~--~P~dYl~F~cL~n~e~~~~g 581 (758)
T PLN02352 504 ASKIRAKERFAVYILIPMWPEGVPESEPVQDILHWTRETMAMMYKLIGEAIQESGEPG--HPRDYLNFFCLANREEKRKG 581 (758)
T ss_pred HHHHhCCCCCEEEEEECCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCccC--ChhHheeeecccccccccCC
Confidence 9999999999999999999999999999999999999999999999999999998654 59999999999999976543
Q ss_pred CCCCCCCCCCCCchhhhhcccCCcceeeeeEEEEEeCeEEEEcccccccccCCCCCCcceEEEEeCcchhhhhccCCCCc
Q 001130 971 DTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYTWARMKRHPYG 1050 (1148)
Q Consensus 971 ~~~~~~~~~~~~~~~~~~~~~r~~~IYVHSKlmIVDD~~viIGSANLN~RSm~G~~DsEiav~i~dp~~~~~~~~~~~~g 1050 (1148)
+... ...+..++.++.+++.++++||||||+|||||+++||||||||+|||.|+|||||||++++++++.. ....+
T Consensus 582 ~~~~-~~~p~~~~~~~~~~~~rr~~IYVHSKlMIVDD~~viIGSANIN~RSM~G~rDSEia~~~~~~~~~~~---~~~~~ 657 (758)
T PLN02352 582 EFVP-PYSPHQKTQYWNAQKNRRFMVYVHSKLMIVDDTYILIGSANVNQRSMDGCRDTEIAIGCYQSKNGTN---TNNPR 657 (758)
T ss_pred cccc-ccCCCCCchhhhcccccceeEEEeeeEEEEcCcEEEEcccccccccccCcccchhhhcccccccCCC---cccch
Confidence 3221 1222344455677788889999999999999999999999999999999999999999999987532 24568
Q ss_pred hhHHHHHHHHHHHhCCCccccCCCcchhHHHHHhhhhhhhhhhhhhhhhccccc-ccccCcceeCCCCCccCC-CCCCCC
Q 001130 1051 QIYGYRMSLWAEHLGYIEDCFGQPETLECVRKVRSVGENNWQQFAADDQSEMRS-HLIKYPVEVDRKGKVRPI-PGYETF 1128 (1148)
Q Consensus 1051 ~~~~lR~~Lw~EHlG~~~~~f~~p~s~~~~~~v~~~~~~nw~~~a~~~~~~~~g-hL~~~p~~~~~~g~~~~~-~g~~~f 1128 (1148)
+|++||++||+||||+.++.|.+|+|++|++++|+++++||++|+++++++|+| ||++||+.|+.+|+|++| ||+++|
T Consensus 658 ~i~~~R~~L~~EHLG~~~~~f~~p~s~ec~~~v~~~~~~~w~~y~~~~~~~~~g~hl~~yp~~v~~~g~v~~l~~g~~~f 737 (758)
T PLN02352 658 DIQAYRMSLWYEHTGLDEESFLEPESLECVRRLRTIGEQMWEIYSGEEVVDMEGVHLVNYPISVTKDGAVEDLADGDGNF 737 (758)
T ss_pred HHHHHHHHHHHHHhCCCHHHhcCCCCHHHHHHHHHHHHHHHHhhccchhccCCCcccccCCeEecCCcceeecCCCCcCC
Confidence 999999999999999999999999999999999999999999999999999999 999999999999999999 699999
Q ss_pred CCCCCccccccC-CCCcCCCC
Q 001130 1129 PDVGGNIVGSFF-AIQENLTI 1148 (1148)
Q Consensus 1129 pd~~~~i~g~~~-~~~~~~~~ 1148 (1148)
|||+|+|+|++. .||++|||
T Consensus 738 pd~~~~v~g~~~~~~p~~lt~ 758 (758)
T PLN02352 738 PDTKTPVKGRRSKMLPPVFTT 758 (758)
T ss_pred CCCCCceeccccccCCccccC
Confidence 999999999996 89999997
No 4
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=100.00 E-value=2.1e-144 Score=1289.84 Aligned_cols=751 Identities=50% Similarity=0.811 Sum_probs=668.6
Q ss_pred CCCCcceeeeceEEEEEEEEeeCCCCCCCCCccccccc---c-------------c----------cCCCCCCCCcEEEE
Q 001130 336 TKGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMF---N-------------S----------QMNTKITSDPYVTI 389 (1148)
Q Consensus 336 q~~~~~~~Ll~GtL~VtV~eAk~L~~~D~~g~~~~~~~---~-------------k----------~~~~~~~sDPYV~V 389 (1148)
......+.|+||+|+++|+.+..+.+++.+..+....+ + | .+++..+.++|+++
T Consensus 65 ~~~~y~v~L~hG~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~e~Ylt~ 144 (887)
T KOG1329|consen 65 SSGSYTVELLHGTLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNINDNHDEKPSGPRSSLNSSMEKRKTLENYLTV 144 (887)
T ss_pred CCcceeeeeecCcEEEEEEecchhhhHHhHHHhhhhhcccccccccccccccccccCCCccCCcccchhhhhhccchhee
Confidence 35566778999999999999999986654333211110 0 0 01222446999999
Q ss_pred EECCEEEEeeeeeeCC-CCCeeceEEEEEecCCCceEEEEEEEccCCC-CcceeeEEEeceeeccCCcccceeeeccCCC
Q 001130 390 AVAGAVVGRTFVISNS-EDPVWQQHFYVPVAHSAAEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVLNGSG 467 (1148)
Q Consensus 390 ~l~g~~~~RTkvi~nt-~NPvWNE~F~f~v~~~~~~L~~~V~D~D~~~-ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~G 467 (1148)
.+....+.+|..+.+. .+|.|.+.|.+.+.+....++++|++.+..+ ..++|.+.+++..+..|..+++|+++++.++
T Consensus 145 ~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~~Il~~d~ 224 (887)
T KOG1329|consen 145 VLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWFPILDNDG 224 (887)
T ss_pred eechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccceeeeeccCC
Confidence 9999999999999886 9999999999999999999999999999988 9999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEEEEecccccccccCCCCCCCCCCCCCCCCCccccCCeeEecccccCCCCCCCceeecCCCccc-hhHH
Q 001130 468 KPCKPGATLTLSIQYTPMERLSFYHRGVGEGPDYNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYV-HGKC 546 (1148)
Q Consensus 468 k~~~~~g~L~L~l~f~p~~~~~~y~~Gv~~~~~~~gvp~t~~P~r~Gn~V~ly~dg~~~~~~~p~i~l~~g~~y~-~~~~ 546 (1148)
++++++..+.+.+.|.+++.+..|..|+..++++.+++.++|+++.||.|++|+|+|..+++.|.+.+++|++|+ .+.|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~g~gv~~~qd~Hr~~sf~P~r~~~~~kw~vd~~~~ 304 (887)
T KOG1329|consen 225 KPHQKGSNESLRLGFTPMEKDRNLKLGCKSGRSFRGWPGTIFPQRKGCGVTLYQDAHRFDSFAPVRTLDGGKWFVDGKKY 304 (887)
T ss_pred ccccCCcccceEEeeEeechhhhhhheeccccccCCccceeeehhccCceeeeecccccCCcCCcccCCCceEEEchhhH
Confidence 999888899999999999999999999999999999999999999999999999999999999999999999655 4578
Q ss_pred HHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHHhhhcCCcEEEEEecCCCccccccccccccccccc
Q 001130 547 WYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHD 626 (1148)
Q Consensus 547 f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILVwD~~~s~~~~g~k~~g~m~t~~ 626 (1148)
|++|++||++||+.|||+|||++|+++|+|+...+.+.||+++||+||++||+|+|||||++++...+ .+++
T Consensus 305 ~edi~dAI~~Ar~~IyItgWwl~pel~L~Rp~~~~~~~rLdelLK~KAeeGVrV~ilv~kdv~s~~~i--------~S~~ 376 (887)
T KOG1329|consen 305 WEDVADAIENARREIYITGWWLSPELYLVRPPKGPNDWRLDELLKRKAEEGVRVLILVWKDVTSALGI--------NSHY 376 (887)
T ss_pred HHHHHHHHHhhhhEEEEeccccCceEEEEccCCCCCceEHHHHHHHHHhCCcEEEEEEeccchhcccc--------Cchh
Confidence 99999999999999999999999999999998766789999999999999999999999999875432 3678
Q ss_pred HHHHHHhhcCCcEEEEccCcccccccccccccccccccccceEEEEcCCCCCCCccEEEEECCccCCCCCCCCCCCCccc
Q 001130 627 EETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFR 706 (1148)
Q Consensus 627 ~et~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~H~l~d 706 (1148)
++++.+++|++|+|++||+..++.. .++|+||||+||||++ +|||||+|||+|||||++|+|+|
T Consensus 377 ~k~~l~~lH~nV~vlr~P~~~~~~~--------~~~wtHHeK~VVVD~~--------v~fvGGlDLC~GRYDT~eH~L~d 440 (887)
T KOG1329|consen 377 EKTRLFFLHPNVKVLRCPRHPGSGP--------TTLWTHHEKLVVVDQE--------VAFVGGLDLCDGRYDTPEHPLFD 440 (887)
T ss_pred HHHHHhhcCCCeEEEECCCCcCCCC--------ceEEecceEEEEEcce--------eccccceeccccccCCccccccc
Confidence 8899999999999999998754321 3689999999999995 99999999999999999999999
Q ss_pred ccccccCCCCCCCcccC----CCCCCCCCCeeeeeeEEcCHHHHHHHHHHHHHHHhhcCCCCccccCCchhhhhhhccCC
Q 001130 707 TLQTLHKDDYHNPTFTG----NTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIP 782 (1148)
Q Consensus 707 ~l~~~~~~Dy~np~~~~----~~~~~pr~PWHDv~vrI~GPaa~Dl~~~F~qrWn~~t~~~~~~~l~~~~~~l~~~~~~p 782 (1148)
+++++|++||+|++|.+ ...++||||||||||+|.||+|+||++||+||||++...+.. +++.++.+.+++
T Consensus 441 ~~~~~~gkDy~n~~~~~~~~~dr~~~PRmPWHDvh~~v~G~~ArDvarhF~QRWn~~~~~K~~-----~~~~~p~L~p~~ 515 (887)
T KOG1329|consen 441 TLQTWHGKDYHNPNFKDFVDIDRKGGPRMPWHDVHCKVDGPAARDVARHFEQRWNKQKREKKP-----YDDSLPLLLPIS 515 (887)
T ss_pred cccccccccccCcccccchhcccCCCCCCCceeeeeeeeChhHHHHHHHHHHHHHHHhcccCC-----CCccceeecChh
Confidence 99999999999999998 678999999999999999999999999999999998754211 122222222333
Q ss_pred CccCCCCCCCcccCCCCCceEEEEeecCCcccccCCCChhhhcccccccCcccchhhHHHHHHHHHHHhhccEEEEEEeE
Q 001130 783 GIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQY 862 (1148)
Q Consensus 783 ~~~~~~~~p~~~~~~~~~~~vQvlRS~~~~s~~~~P~~P~~~~~~~l~~g~~~~~e~sI~~Ayl~aI~~Ak~fIYIENQY 862 (1148)
++..++. ..+.+++.|.+|++||++.+++.+ |+.+...++.||+...+|+||++||+++|++|||||||||||
T Consensus 516 ~~~~~~~---~~~~~~e~~~~q~f~si~~gs~~~----~qvlrs~g~wS~g~~~~e~SIq~AYv~~Ir~a~hFIYIENQf 588 (887)
T KOG1329|consen 516 DITGPSE---PNEEDPESWHVQVFRSIDGGSVAG----PQVLRSAGLWSGGINEIEDSIQNAYVKAIRNAEHFIYIENQF 588 (887)
T ss_pred hhcCCCC---ccccccccccccceeeccCCcccc----hHHhhhhcccccCCCchHHHHHHHHHHHHHhccceEEEeeee
Confidence 3322221 135677889999999999887654 667777889999998899999999999999999999999999
Q ss_pred eecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCC--CC--CCCCcchhHHHHHHHHhHhhHHHHHH
Q 001130 863 FIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWP--EG--VPTGAATQRILFWQHKTMQMMYETIY 938 (1148)
Q Consensus 863 Fi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~P--eg--~p~~~s~~~il~~~~rTm~~~~~si~ 938 (1148)
|+++++.|. ...|.+.++|+++|++|++|++.|+||||||+|| || .+++++.|+||+||+|||+|||++|+
T Consensus 589 Fi~ss~~~~-----~~~n~v~~ela~rIv~a~ra~e~frVYIVIPL~PgfEG~~~p~~~svqaIl~wQyrTms~g~~sI~ 663 (887)
T KOG1329|consen 589 FIGSSFNWD-----SVLNKVGDELALRIVKAIRAGEKFRVYIVIPLWPGFEGDDTPGSGSVQAILHWQYRTMSMGYKSIY 663 (887)
T ss_pred EEeeccCCC-----cccchHHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCCCCcchHHHHHHHHHHHHhhhHHHHH
Confidence 999988776 4567788999999999999999999999999999 88 78999999999999999999999999
Q ss_pred HHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCCcceeeeeEEEEEeCeEEEEcccccc
Q 001130 939 KALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANIN 1018 (1148)
Q Consensus 939 ~~L~~~Gv~~~~~P~~Yl~f~~L~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~IYVHSKlmIVDD~~viIGSANLN 1018 (1148)
++|++.|++- .+|.+|++|+|+++++.- +++.++||||||||+|||||+++||||||||
T Consensus 664 ~~Lka~g~d~-~~yi~f~~lr~~g~~e~~--------------------~~~~~~emIYVHsK~mIvDD~~vIIGSANIN 722 (887)
T KOG1329|consen 664 KALKAVGLDP-ADYIDFLGLRCLGNREEQ--------------------AQRLRREMIYVHSKLMIVDDEYVIIGSANIN 722 (887)
T ss_pred HHHHHhcCCc-cccceeeeeeeeeccccc--------------------cccceEEEEEEeeeeEEecCCEEEEeecccc
Confidence 9999999986 467788899999887641 2446789999999999999999999999999
Q ss_pred cccCCCCCCcceEEEEeCcchhhhhccCCCCchhHHHHHHHHHHHhCCCccccCCCcchhHHHHHhhhhhhhhhhhhhhh
Q 001130 1019 QRSMEGTRDTEIAMGAYQPEYTWARMKRHPYGQIYGYRMSLWAEHLGYIEDCFGQPETLECVRKVRSVGENNWQQFAADD 1098 (1148)
Q Consensus 1019 ~RSm~G~~DsEiav~i~dp~~~~~~~~~~~~g~~~~lR~~Lw~EHlG~~~~~f~~p~s~~~~~~v~~~~~~nw~~~a~~~ 1098 (1148)
+|||.|+|||||||+++|+.+++..+...++|++++|||+||+||||+.++.|.+|++++|++.++++.+++|..+|+++
T Consensus 723 qRSm~G~RDSEIA~~~~d~~~~~s~m~g~p~~f~~~lR~slw~EHLG~~~d~~~~Pe~~ec~dpv~d~~~~~W~~~a~~n 802 (887)
T KOG1329|consen 723 QRSMLGNRDSEIAMGIYDTNHVWSKMNGRPYGFIYGLRMSLWREHLGLLDDAFEEPESLECEDPVRDLFEDLWQRYAARN 802 (887)
T ss_pred hhhccCCccceeEEEEecccchhhccCCcchhHHHHHHHHHHHHHhCCCcccccCcchhhhhhhHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccCcceeCCCCCccCCCCCCCCCCCCCcccccc-CCCCcCCCC
Q 001130 1099 QSEMRSHLIKYPVEVDRKGKVRPIPGYETFPDVGGNIVGSF-FAIQENLTI 1148 (1148)
Q Consensus 1099 ~~~~~ghL~~~p~~~~~~g~~~~~~g~~~fpd~~~~i~g~~-~~~~~~~~~ 1148 (1148)
.+.+.|||++||+++..+|++.+++|.++|||+.|+|.|.+ .++|++||+
T Consensus 803 ~~~y~~~f~~yP~~~~~~g~~~~~~~~~~~pd~~~~~~~~~~~~~~~~lt~ 853 (887)
T KOG1329|consen 803 TTIYEGHFRCYPIDVVRTGKVTELPGDETFPDTLGKIIGSKSDALPENLTT 853 (887)
T ss_pred hhhhhceEEEcccccccCcceeecCCccccccccccccccccccCCccccc
Confidence 99999999999999999999999999999999999999997 699999986
No 5
>PLN02866 phospholipase D
Probab=100.00 E-value=1.1e-93 Score=872.37 Aligned_cols=531 Identities=31% Similarity=0.512 Sum_probs=409.5
Q ss_pred CCCCccc----cCCeeEecccccCCCCCCCceeecCCCccchhHHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCc
Q 001130 506 GTYFPLR----KGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPA 581 (1148)
Q Consensus 506 ~t~~P~r----~Gn~V~ly~dg~~~~~~~p~i~l~~g~~y~~~~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~ 581 (1148)
.+|+|.+ .||+|+||.||+ ++|++|++||++||++|+|++|||+|++||+|+..+.
T Consensus 321 ~SFAP~r~~~~~gN~vk~LvDG~--------------------dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~D~ 380 (1068)
T PLN02866 321 GSFAPPRGLTEDGSQAQWFIDGH--------------------AAFEAIASAIENAKSEIFITGWWLCPELYLRRPFHDH 380 (1068)
T ss_pred CCcCCCccccCCCCEEEEEeCHH--------------------HHHHHHHHHHHhcccEEEEEEccCCceEEEEecCCCc
Confidence 5789999 699999999997 7899999999999999999999999999999964345
Q ss_pred hHHHHHHHHHHhhhcCCcEEEEEecCCCcccccccccccccccccHHHHHHh--hcCCcEEEEccCcccccccccccccc
Q 001130 582 LDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVF--KHSSVKVLLCPRIAGKRHSWAKQKEV 659 (1148)
Q Consensus 582 ~g~~L~dlL~~kA~rGVkVrILVwD~~~s~~~~g~k~~g~m~t~~~et~~~l--~~~gV~v~l~p~~~~~~~~~~~~~~~ 659 (1148)
.+.+|+++|++||++||+||||+||+++..... .+..+++.+ .++||+|..+|... + ..
T Consensus 381 ~g~RL~~lL~rKAkrGVkVrVLLyD~vg~al~~----------~S~~~k~~L~~lh~gI~V~r~P~~~----~-----~~ 441 (1068)
T PLN02866 381 ESSRLDSLLEAKAKQGVQIYILLYKEVALALKI----------NSVYSKRRLLGIHENVKVLRYPDHF----S-----SG 441 (1068)
T ss_pred hHHHHHHHHHHHHHCCCEEEEEEECcccccccc----------CchhhHHHHHHhCCCeEEEecCccc----c-----cC
Confidence 789999999999999999999999997642111 011222222 37899998776421 0 12
Q ss_pred cccccccceEEEEcCCCCCCCccEEEEECCccCCCCCCCCCCCCcccc-cccccCCCCCCCcccC------------CCC
Q 001130 660 GTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRT-LQTLHKDDYHNPTFTG------------NTT 726 (1148)
Q Consensus 660 ~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~H~l~d~-l~~~~~~Dy~np~~~~------------~~~ 726 (1148)
.++||||||+||||++ +|||||+|||.|||||++|++.|. ...|+++||.|++... +..
T Consensus 442 ~ln~RhHRKIVVIDg~--------IAFvGGiNLc~GRWDT~~H~l~D~~~~~wPGkDY~Npr~~d~~~~~~~~~d~ldR~ 513 (1068)
T PLN02866 442 VYLWSHHEKLVIVDYQ--------ICFIGGLDLCFGRYDTPEHRVGDCPPVIWPGKDYYNPRESEPNSWEDTMKDELDRR 513 (1068)
T ss_pred cccccCCCCeEEECCC--------EEEecCcccCCCccCCcccccccccccccCcccccccccccccccccccccccccc
Confidence 3579999999999996 999999999999999999999884 4568899999986533 124
Q ss_pred CCCCCCeeeeeeEEcCHHHHHHHHHHHHHHHhhcCCCCccc----c-C--------Cc--------------h-------
Q 001130 727 GCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHGIKK----L-K--------SG--------------D------- 772 (1148)
Q Consensus 727 ~~pr~PWHDv~vrI~GPaa~Dl~~~F~qrWn~~t~~~~~~~----l-~--------~~--------------~------- 772 (1148)
..|||||||+||+|+||+|+||+++|++|||.+++.....+ + - .+ .
T Consensus 514 ~~pRmPWHDV~~~V~GpAardLa~hFvqRWN~at~~k~~~~~~~~ll~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 593 (1068)
T PLN02866 514 KYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRNKAPNEQAIPLLMPHHHMVIPHYLGGSEEEEIESKNQEDNQKGIA 593 (1068)
T ss_pred cCCCCCceEEEEEEECHHHHHHHHHHHHHHHHHhcccCcccccccccccccccccccccccccccccccccccccccccc
Confidence 56889999999999999999999999999998875431100 0 0 00 0
Q ss_pred --hhhh---hhccCCCccCC-------------------------------------CCCCC------------------
Q 001130 773 --DALL---RIERIPGIIGI-------------------------------------SDAPS------------------ 792 (1148)
Q Consensus 773 --~~l~---~~~~~p~~~~~-------------------------------------~~~p~------------------ 792 (1148)
+... ....+|.+.+. +..|.
T Consensus 594 ~~~~~~~~~~~~~~P~llP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 673 (1068)
T PLN02866 594 RQDSFSSRSSLQDIPLLLPQEADATDGSGGGHKLNGMNSTNGSLSFSFRKSKIEPVLPDTPMKGFVDDLGFLDLSVKMSS 673 (1068)
T ss_pred ccccccccccccccccCCCCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0000 00000000000 00000
Q ss_pred ----------------------------cccCCCCCceEEEEeecCCcccccCCCChhhhcccccccCcccchhhHHHHH
Q 001130 793 ----------------------------VRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTA 844 (1148)
Q Consensus 793 ----------------------------~~~~~~~~~~vQvlRS~~~~s~~~~P~~P~~~~~~~l~~g~~~~~e~sI~~A 844 (1148)
......+++.+||+||++.||+.. + .+|+||++|
T Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~QivRS~~~WS~G~-~-----------------~~E~SI~~A 735 (1068)
T PLN02866 674 AERGSKESDSEWWETQERGDQVGSADEVGQVGPRVSCRCQVIRSVSQWSAGT-S-----------------QVEESIHAA 735 (1068)
T ss_pred cccccccccccccccccccccccccccccccCCCCeEEEEEEeecccccCCC-C-----------------chHHHHHHH
Confidence 000123468999999999998521 0 158899999
Q ss_pred HHHHHHhhccEEEEEEeEeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCC--C-CC--CCcch
Q 001130 845 YVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPE--G-VP--TGAAT 919 (1148)
Q Consensus 845 yl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Pe--g-~p--~~~s~ 919 (1148)
|+++|++|+||||||||||+++.. .+..+.|+|+.+|+++|++|+++++.|+|+||||++|+ | .+ ++.+.
T Consensus 736 Yi~~I~~A~hfIYIENQFFis~~~-----~~~~i~N~I~~AL~~RI~rA~~~~~~frviIViP~~P~F~G~v~~~~~~sv 810 (1068)
T PLN02866 736 YCSLIEKAEHFIYIENQFFISGLS-----GDDTIQNRVLEALYRRILRAHKEKKCFRVIIVIPLLPGFQGGVDDGGAASV 810 (1068)
T ss_pred HHHHHHhcccEEEEeccccccccc-----ccccccchHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcCCCCCCccchhH
Confidence 999999999999999999999753 23467999999999999999999999999999999997 3 22 34679
Q ss_pred hHHHHHHHHhHhhHHHHHHHHHHHc-CCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCCcceee
Q 001130 920 QRILFWQHKTMQMMYETIYKALVEV-GLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYV 998 (1148)
Q Consensus 920 ~~il~~~~rTm~~~~~si~~~L~~~-Gv~~~~~P~~Yl~f~~L~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~IYV 998 (1148)
+.||+||++||++|+.+|+++|+++ |. +|.+|++|||||+++.+.... + -.+++|||
T Consensus 811 r~Im~~Q~~tI~rG~~Si~~~L~~~~g~----~p~dYisf~~LRn~~~l~~~~------------~------~vteqIYV 868 (1068)
T PLN02866 811 RAIMHWQYRTICRGKNSILHNLYDLLGP----KTHDYISFYGLRAYGRLFEGG------------P------LATSQIYV 868 (1068)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhCC----CHHHeEeeecccccccccCCC------------c------ccceeeEE
Confidence 9999999999999999999999985 53 577999999999987763111 0 12358999
Q ss_pred eeEEEEEeCeEEEEcccccccccCCCCCCcceEEEEeCcchhhhhccC---CCCchhHHHHHHHHHHHhCCCccc---cC
Q 001130 999 HSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYTWARMKR---HPYGQIYGYRMSLWAEHLGYIEDC---FG 1072 (1148)
Q Consensus 999 HSKlmIVDD~~viIGSANLN~RSm~G~~DsEiav~i~dp~~~~~~~~~---~~~g~~~~lR~~Lw~EHlG~~~~~---f~ 1072 (1148)
|||+|||||++++|||||||+|||.|++||||+|+++|++++...+.+ .+++++++||++||+||||+..+. +.
T Consensus 869 HsK~~IvDD~~~iiGSaNiN~RS~~G~rDsEia~~~~d~~~~~s~m~G~~~~ag~fa~~lR~~L~~EHLG~~~~~~~~~~ 948 (1068)
T PLN02866 869 HSKIMIVDDRAALIGSANINDRSLLGSRDSEIGVVIEDKEFVDSSMNGKPWKAGKFAHSLRLSLWSEHLGLRAGEIDKII 948 (1068)
T ss_pred EeeEEEEcCcEEEEccccccccccccCcCcceeeeeecccccccccCCccccccchhHHHHHHHHHHHhCCCchhhhccc
Confidence 999999999999999999999999999999999999999876544433 456789999999999999997643 45
Q ss_pred CCcchhHHH-HHhhhhhhhhh---------------------hhh----------------------------------h
Q 001130 1073 QPETLECVR-KVRSVGENNWQ---------------------QFA----------------------------------A 1096 (1148)
Q Consensus 1073 ~p~s~~~~~-~v~~~~~~nw~---------------------~~a----------------------------------~ 1096 (1148)
+|-+-+.+. .|+..|..|-. ++. .
T Consensus 949 DP~~d~~~k~~W~~~A~~Nt~Iy~~vF~c~P~d~Vr~~~~~~~~~~~~~~~~gh~~i~lg~~~~~~~~~~~~~~~~~~~~ 1028 (1068)
T PLN02866 949 DPVCDTTYKDLWMATAKTNTDIYQDVFSCIPNDLIHSRAALRQSMASRKEKLGHTTIDLGIAPEKLESYENGDIKSSDPM 1028 (1068)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccHHHHHHHhhhcccccCccccccccccccccccccccchhhhHH
Confidence 676655553 35666654431 111 2
Q ss_pred hhhcccccccccCcceeCCCCCccCCCCCCCC
Q 001130 1097 DDQSEMRSHLIKYPVEVDRKGKVRPIPGYETF 1128 (1148)
Q Consensus 1097 ~~~~~~~ghL~~~p~~~~~~g~~~~~~g~~~f 1128 (1148)
+++..++||||.||++|..++.++|.-+..+|
T Consensus 1029 ~~l~~I~G~lV~fPL~Fl~~E~L~p~~~~~e~ 1060 (1068)
T PLN02866 1029 ERLKSVRGHLVSFPLDFMCQEDLRPVFNESEY 1060 (1068)
T ss_pred HHHhhceEEEEechhhhhhhccCCCCcCccce
Confidence 45789999999999999999999887775554
No 6
>PRK12452 cardiolipin synthetase; Reviewed
Probab=100.00 E-value=2.3e-47 Score=457.52 Aligned_cols=335 Identities=26% Similarity=0.334 Sum_probs=255.3
Q ss_pred CCCccccCCeeEecccccCCCCCCCceeecCCCccchhHHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHH
Q 001130 507 TYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTL 586 (1148)
Q Consensus 507 t~~P~r~Gn~V~ly~dg~~~~~~~p~i~l~~g~~y~~~~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L 586 (1148)
+.+|...||+|++|.||+ ++|++++++|++||++|+|+.| +++++. .+..+
T Consensus 132 ~~~p~~~~n~~~ll~~g~--------------------~~~~~l~~~I~~Ak~~I~i~~y-------i~~~d~--~g~~i 182 (509)
T PRK12452 132 GGGPAADRTTTKLLTNGD--------------------QTFSEILQAIEQAKHHIHIQYY-------IYKSDE--IGTKV 182 (509)
T ss_pred cCCcccCCCEEEEeCCHH--------------------HHHHHHHHHHHHhCCEEEEEEE-------EEeCCc--HHHHH
Confidence 558999999999999997 7999999999999999999988 666664 78999
Q ss_pred HHHHHHhhhcCCcEEEEEecCCCcccccccccccccccccHHHHHHhhcCCcEEEEccCccccccccccccccccccccc
Q 001130 587 GELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHH 666 (1148)
Q Consensus 587 ~dlL~~kA~rGVkVrILVwD~~~s~~~~g~k~~g~m~t~~~et~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HH 666 (1148)
.++|++||+|||+||||+ |+.|+... .....+.|+++||+|..+.+.. .++. ....++|||
T Consensus 183 ~~aL~~aa~rGV~VRiL~-D~~Gs~~~------------~~~~~~~L~~aGi~v~~f~P~~---~~~~---~~~~n~RnH 243 (509)
T PRK12452 183 RDALIKKAKDGVIVRFLY-DGLGSNTL------------RRRFLQPMKEAGIEIVEFDPIF---SAWL---LETVNYRNH 243 (509)
T ss_pred HHHHHHHHHCCCEEEEEE-ECCCCCCC------------CHHHHHHHHhCCeEEEEecCcc---cccc---cccccCCCC
Confidence 999999999999999995 99887421 1245667889999998775432 1111 124678999
Q ss_pred ceEEEEcCCCCCCCccEEEEECCccCCCCCCCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCHHHH
Q 001130 667 QKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAY 746 (1148)
Q Consensus 667 QKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~H~l~d~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GPaa~ 746 (1148)
+|++|||++ +||+||+|+++++.... ....+|||+|++|+||+|.
T Consensus 244 RKi~VIDg~--------ia~~GG~Ni~d~y~~~~---------------------------~~~~~WrD~~~~i~Gp~V~ 288 (509)
T PRK12452 244 RKIVIVDGE--------IGFTGGLNVGDEYLGRS---------------------------KKFPVWRDSHLKVEGKALY 288 (509)
T ss_pred CeEEEEcCC--------EEEeCCcccchhhcCCC---------------------------CCCCCceEEEEEEECHHHH
Confidence 999999996 99999999999654210 1346899999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCccccCCchhhhhhhccCCCccCCCCCCCcccCCCCCceEEEEeecCCcccccCCCChhhhcc
Q 001130 747 DVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATS 826 (1148)
Q Consensus 747 Dl~~~F~qrWn~~t~~~~~~~l~~~~~~l~~~~~~p~~~~~~~~p~~~~~~~~~~~vQvlRS~~~~s~~~~P~~P~~~~~ 826 (1148)
+++..|.++|+.+++.... ..+.. ... +. ..|.. ....+...+|++.+.+ ..
T Consensus 289 ~l~~~F~~dW~~~~~~~~~---~~~~~-~~~----~~-----~~~~~-~~~~~~~~~q~~~sgp--------~~------ 340 (509)
T PRK12452 289 KLQAIFLEDWLYASSGLNT---YSWDP-FMN----RQ-----YFPGK-EISNAEGAVQIVASGP--------SS------ 340 (509)
T ss_pred HHHHHHHHHHHHhhCcccc---ccccc-ccc----hh-----cCCCc-cccCCCeEEEEEeCCC--------Cc------
Confidence 9999999999987643100 00000 000 00 00000 0112334688887632 11
Q ss_pred cccccCcccchhhHHHHHHHHHHHhhccEEEEEEeEeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEe
Q 001130 827 KNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVI 906 (1148)
Q Consensus 827 ~~l~~g~~~~~e~sI~~Ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVl 906 (1148)
.+.+|+++|+++|.+||++|||++|||+++. .+..+|..| +.+||+|+||+
T Consensus 341 ----------~~~~i~~~~l~~I~~A~~~I~I~tpYf~pd~-----------------~l~~aL~~A--a~rGV~Vrii~ 391 (509)
T PRK12452 341 ----------DDKSIRNTLLAVMGSAKKSIWIATPYFIPDQ-----------------ETLTLLRLS--AISGIDVRILY 391 (509)
T ss_pred ----------hhHHHHHHHHHHHHHhhhEEEEECCccCCCH-----------------HHHHHHHHH--HHcCCEEEEEc
Confidence 1358999999999999999999999999863 455555544 46999999999
Q ss_pred cCCCCCCCCCcchhHHHHHHHHhHhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhh
Q 001130 907 PMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEA 986 (1148)
Q Consensus 907 P~~Peg~p~~~s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~L~~r~~~~~~~~~~~~~~~~~~~~~~ 986 (1148)
|..+ ++.+++|+.+ ++++.|+++|+++++ |
T Consensus 392 p~~~--------D~~~~~~a~~-------~~~~~L~~aGv~I~~----y------------------------------- 421 (509)
T PRK12452 392 PGKS--------DSIISDQASQ-------SYFTPLLKAGASIYS----Y------------------------------- 421 (509)
T ss_pred CCCC--------ChHHHHHHHH-------HHHHHHHHcCCEEEE----e-------------------------------
Confidence 9743 5666666554 578999999999863 1
Q ss_pred hhcccCCcceeeeeEEEEEeCeEEEEcccccccccCCCCCCcceEEEEeCcchh
Q 001130 987 LSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1040 (1148)
Q Consensus 987 ~~~~~r~~~IYVHSKlmIVDD~~viIGSANLN~RSm~G~~DsEiav~i~dp~~~ 1040 (1148)
...++|+|+|||||++++|||+|||.||+. .|.|+++.++|++.+
T Consensus 422 -------~~~~lHaK~~ivD~~~a~vGS~Nld~RS~~--~n~E~~~~i~~~~~~ 466 (509)
T PRK12452 422 -------KDGFMHAKIVLVDDKIATIGTANMDVRSFE--LNYEIISVLYESETV 466 (509)
T ss_pred -------cCCCeeeeEEEECCCEEEEeCcccCHhHhh--hhhhccEEEECHHHH
Confidence 024899999999999999999999999998 899999999998753
No 7
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=100.00 E-value=2.8e-46 Score=447.15 Aligned_cols=331 Identities=24% Similarity=0.385 Sum_probs=253.7
Q ss_pred CCCccccCCeeEecccccCCCCCCCceeecCCCccchhHHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHH
Q 001130 507 TYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTL 586 (1148)
Q Consensus 507 t~~P~r~Gn~V~ly~dg~~~~~~~p~i~l~~g~~y~~~~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L 586 (1148)
+.+|...||+|+++.||+ ++|++|+++|++||++|+|+.| +++++. .+.++
T Consensus 108 ~~~~~~~~n~v~ll~~g~--------------------~~~~~l~~~I~~Ak~~I~l~~y-------i~~~d~--~g~~i 158 (483)
T PRK01642 108 QGIPGLKGNQLRLLTNGD--------------------ETFQAIIRDIELARHYILMEFY-------IWRPDG--LGDQV 158 (483)
T ss_pred cCCCccCCCEEEEEcCHH--------------------HHHHHHHHHHHHhhcEEEEEEE-------EEccCC--cHHHH
Confidence 557899999999999997 7899999999999999999998 556654 78999
Q ss_pred HHHHHHhhhcCCcEEEEEecCCCcccccccccccccccccHHHHHHhhcCCcEEEEc-cCcccccccccccccccccccc
Q 001130 587 GELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLC-PRIAGKRHSWAKQKEVGTIYTH 665 (1148)
Q Consensus 587 ~dlL~~kA~rGVkVrILVwD~~~s~~~~g~k~~g~m~t~~~et~~~l~~~gV~v~l~-p~~~~~~~~~~~~~~~~~~~~H 665 (1148)
.++|++||+|||+||||+ |+.|+.... .....+.|+..||+|..+ |... .++ .....++|+
T Consensus 159 ~~aL~~aa~rGV~VriL~-D~~Gs~~~~-----------~~~~~~~L~~~Gi~v~~~~p~~~---~~~---~~~~~n~Rn 220 (483)
T PRK01642 159 AEALIAAAKRGVRVRLLY-DSIGSFAFF-----------RSPYPEELRNAGVEVVEFLKVNL---GRV---FRRRLDLRN 220 (483)
T ss_pred HHHHHHHHHCCCEEEEEE-ECCCCCCCC-----------cHHHHHHHHHCCCEEEEecCCCc---ccc---ccccccccc
Confidence 999999999999999995 998874321 122456688899999987 4311 111 112457899
Q ss_pred cceEEEEcCCCCCCCccEEEEECCccCCC-CCCCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCHH
Q 001130 666 HQKTVIVDADAGYNRRKIIAFVGGLDLCD-GRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPA 744 (1148)
Q Consensus 666 HQKiVVVD~~~~~~~r~~vAFVGGiDL~d-gRwDt~~H~l~d~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GPa 744 (1148)
|+|++|||++ +||+||+|+++ +|.... ....+|||++++|+||+
T Consensus 221 HrKi~VIDg~--------ia~~Gg~Ni~d~~y~~~~---------------------------~~~~~w~D~~~~i~Gp~ 265 (483)
T PRK01642 221 HRKIVVIDGY--------IAYTGSMNVVDPEYFKQD---------------------------PGVGQWRDTHVRIEGPV 265 (483)
T ss_pred CceEEEEcCC--------EEEeCCcccCCHHHhCCC---------------------------CCCCCcEEEEEEEEcHH
Confidence 9999999996 99999999999 654210 12468999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCccccCCchhhhhhhccCCCccCCCCCCCcccCCCCCceEEEEeecCCcccccCCCChhhh
Q 001130 745 AYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEA 824 (1148)
Q Consensus 745 a~Dl~~~F~qrWn~~t~~~~~~~l~~~~~~l~~~~~~p~~~~~~~~p~~~~~~~~~~~vQvlRS~~~~s~~~~P~~P~~~ 824 (1148)
|.+++..|.++|+.++++.. ... .+.. ...+ ....+...+|++.+. |..+
T Consensus 266 v~~l~~~F~~dW~~~~~~~~---~~~----------~~~~---~~~~---~~~~~~~~~qi~~sg--------P~~~--- 315 (483)
T PRK01642 266 VTALQLIFAEDWEWETGERI---LPP----------PPDV---LIMP---FEEASGHTVQVIASG--------PGDP--- 315 (483)
T ss_pred HHHHHHHHHHHHHHHhCccc---CCC----------Cccc---ccCC---ccCCCCceEEEEeCC--------CCCh---
Confidence 99999999999998765310 000 0000 0000 011223468887763 2111
Q ss_pred cccccccCcccchhhHHHHHHHHHHHhhccEEEEEEeEeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEE
Q 001130 825 TSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYI 904 (1148)
Q Consensus 825 ~~~~l~~g~~~~~e~sI~~Ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~I 904 (1148)
+..|+++|+++|.+||++|||++|||+++. .+..+|..| +.+||+|+|
T Consensus 316 -------------~~~~~~~~~~~I~~A~~~I~I~tpYfip~~-----------------~i~~aL~~A--a~rGV~Vri 363 (483)
T PRK01642 316 -------------EETIHQFLLTAIYSARERLWITTPYFVPDE-----------------DLLAALKTA--ALRGVDVRI 363 (483)
T ss_pred -------------hhHHHHHHHHHHHHhccEEEEEcCCcCCCH-----------------HHHHHHHHH--HHcCCEEEE
Confidence 347999999999999999999999999863 455566554 479999999
Q ss_pred EecCCCCCCCCCcchhHHHHHHHHhHhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCch
Q 001130 905 VIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTP 984 (1148)
Q Consensus 905 VlP~~Peg~p~~~s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~L~~r~~~~~~~~~~~~~~~~~~~~ 984 (1148)
|+|..+ ++.+++|+.+ ++++.|.++|++++. |
T Consensus 364 l~p~~~--------d~~~~~~~~~-------~~~~~L~~~Gv~I~~----y----------------------------- 395 (483)
T PRK01642 364 IIPSKN--------DSLLVFWASR-------AFFTELLEAGVKIYR----Y----------------------------- 395 (483)
T ss_pred EeCCCC--------CcHHHHHHHH-------HHHHHHHHcCCEEEE----e-----------------------------
Confidence 999854 4566666654 478899999998863 1
Q ss_pred hhhhcccCCcceeeeeEEEEEeCeEEEEcccccccccCCCCCCcceEEEEeCcchh
Q 001130 985 EALSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1040 (1148)
Q Consensus 985 ~~~~~~~r~~~IYVHSKlmIVDD~~viIGSANLN~RSm~G~~DsEiav~i~dp~~~ 1040 (1148)
...++|||+|||||++++|||+|||.||+. .|.|+++.++|++++
T Consensus 396 ---------~~~~~HaK~~ivD~~~~~vGS~N~d~rS~~--~N~E~~~~i~d~~~~ 440 (483)
T PRK01642 396 ---------EGGLLHTKSVLVDDELALVGTVNLDMRSFW--LNFEITLVIDDTGFA 440 (483)
T ss_pred ---------CCCceEeEEEEECCCEEEeeCCcCCHhHHh--hhhcceEEEECHHHH
Confidence 023799999999999999999999999998 899999999998754
No 8
>PRK11263 cardiolipin synthase 2; Provisional
Probab=100.00 E-value=9.1e-45 Score=424.14 Aligned_cols=326 Identities=21% Similarity=0.309 Sum_probs=243.8
Q ss_pred ccccCCeeEecccccCCCCCCCceeecCCCccchhHHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHH
Q 001130 510 PLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGEL 589 (1148)
Q Consensus 510 P~r~Gn~V~ly~dg~~~~~~~p~i~l~~g~~y~~~~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dl 589 (1148)
+.+.||+|+|+.||+ ++|++++++|++||++|+|++|. +.++. .+..|.++
T Consensus 3 ~~~~gN~v~ll~~G~--------------------e~~~~l~~~I~~Ak~~I~i~~yi-------~~~d~--~g~~l~~a 53 (411)
T PRK11263 3 SWREGNRIQLLENGE--------------------QYYPRVFEAIAAAQEEILLETFI-------LFEDK--VGKQLHAA 53 (411)
T ss_pred cccCCCeEEEEeCHH--------------------HHHHHHHHHHHHhCCEEEEEEEE-------EecCc--hHHHHHHH
Confidence 678899999999997 89999999999999999999984 44443 68999999
Q ss_pred HHHhhhcCCcEEEEEecCCCcccccccccccccccccHHHHHHhhcCCcEEEEccCcccccccccccccccccccccceE
Q 001130 590 LRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKT 669 (1148)
Q Consensus 590 L~~kA~rGVkVrILVwD~~~s~~~~g~k~~g~m~t~~~et~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKi 669 (1148)
|++||+|||+||||+ |..++... .....+.|.+.||+|..+.+.. .++ ......+.++|+|+
T Consensus 54 L~~aa~rGV~Vril~-D~~gs~~~------------~~~~~~~L~~aGv~v~~~~p~~----~~~-~~~~~~~~R~HrKi 115 (411)
T PRK11263 54 LLAAAQRGVKVEVLV-DGYGSPDL------------SDEFVNELTAAGVRFRYFDPRP----RLL-GMRTNLFRRMHRKI 115 (411)
T ss_pred HHHHHHCCCEEEEEE-ECCCCCCC------------CHHHHHHHHHCCeEEEEeCCcc----ccc-ccccccccCCcceE
Confidence 999999999999996 88775321 1345667888999998764421 111 01122345999999
Q ss_pred EEEcCCCCCCCccEEEEECCccCCCCCCCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCHHHHHHH
Q 001130 670 VIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVL 749 (1148)
Q Consensus 670 VVVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~H~l~d~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GPaa~Dl~ 749 (1148)
+|||++ +|||||+|++++++.. .....|+|++++|+||+|.++.
T Consensus 116 iVIDg~--------~a~vGg~N~~~~~~~~----------------------------~g~~~w~D~~v~i~Gp~V~~l~ 159 (411)
T PRK11263 116 VVIDGR--------IAFVGGINYSADHLSD----------------------------YGPEAKQDYAVEVEGPVVADIH 159 (411)
T ss_pred EEEcCC--------EEEEcCeEchHhhccc----------------------------cCCCCceEEEEEEECHHHHHHH
Confidence 999996 9999999999865521 1125799999999999999999
Q ss_pred HHHHHHHHhhcCCCCccccCCchhhhhhhccCCCccCCCCCCCcccCCCCCceEEEEeecCCcccccCCCChhhhccccc
Q 001130 750 TNFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNL 829 (1148)
Q Consensus 750 ~~F~qrWn~~t~~~~~~~l~~~~~~l~~~~~~p~~~~~~~~p~~~~~~~~~~~vQvlRS~~~~s~~~~P~~P~~~~~~~l 829 (1148)
..|.+.|....... . ... +.+. .+ .....+...+|++.+- |..
T Consensus 160 ~~f~~~w~~~~~~~---~-------~~~--~~~~------~~--~~~~~g~~~~~~v~~~--------p~~--------- 202 (411)
T PRK11263 160 QFELEALPGQSAAR---R-------WWR--RHHR------AE--ENRQPGEAQALLVWRD--------NEE--------- 202 (411)
T ss_pred HHHHHHHhhcccch---h-------hhc--cccc------Cc--ccCCCCCeEEEEEECC--------Ccc---------
Confidence 99999997532110 0 000 0000 00 0011233346665431 110
Q ss_pred ccCcccchhhHHHHHHHHHHHhhccEEEEEEeEeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCC
Q 001130 830 VCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMW 909 (1148)
Q Consensus 830 ~~g~~~~~e~sI~~Ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~ 909 (1148)
....|+.+|+++|++||+.|||+|+||+++. .+..+|..| +++||+|+||+|..
T Consensus 203 -------~~~~i~~~~~~~i~~A~~~I~I~tpYf~p~~-----------------~l~~aL~~A--a~RGV~V~ii~~~~ 256 (411)
T PRK11263 203 -------HRDDIERHYLKALRQARREVIIANAYFFPGY-----------------RLLRALRNA--ARRGVRVRLILQGE 256 (411)
T ss_pred -------hHHHHHHHHHHHHHHhceEEEEEecCcCCCH-----------------HHHHHHHHH--HHCCCEEEEEeCCC
Confidence 1347999999999999999999999999863 355555554 46999999999974
Q ss_pred CCCCCCCcchhHHHHHHHHhHhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhc
Q 001130 910 PEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSR 989 (1148)
Q Consensus 910 Peg~p~~~s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~L~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 989 (1148)
+ +++++.|..+ .+++.|+++|++++. | +
T Consensus 257 ~--------d~~~~~~a~~-------~~~~~Ll~~Gv~I~~----y----~----------------------------- 284 (411)
T PRK11263 257 P--------DMPIVRVGAR-------LLYNYLLKGGVQIYE----Y----C----------------------------- 284 (411)
T ss_pred C--------CcHHHHHHHH-------HHHHHHHHCCCEEEE----e----c-----------------------------
Confidence 3 5667766554 478999999999863 1 0
Q ss_pred ccCCcceeeeeEEEEEeCeEEEEcccccccccCCCCCCcceEEEEeCcchh
Q 001130 990 KSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1040 (1148)
Q Consensus 990 ~~r~~~IYVHSKlmIVDD~~viIGSANLN~RSm~G~~DsEiav~i~dp~~~ 1040 (1148)
..++|+|+|||||++++|||+|||.|||. .|.|+++.|+|++++
T Consensus 285 -----~~~lHaK~~viD~~~~~vGS~Nld~rS~~--lN~E~~~~i~d~~~a 328 (411)
T PRK11263 285 -----RRPLHGKVALMDDHWATVGSSNLDPLSLS--LNLEANLIIRDRAFN 328 (411)
T ss_pred -----CCCceeEEEEECCCEEEEeCCcCCHHHhh--hhhhcCEEEeCHHHH
Confidence 13799999999999999999999999998 899999999999864
No 9
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=100.00 E-value=5.5e-35 Score=346.08 Aligned_cols=337 Identities=27% Similarity=0.380 Sum_probs=242.7
Q ss_pred ccCCeeEecccccCCCCCCCceeecCCCccchhHHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHH
Q 001130 512 RKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLR 591 (1148)
Q Consensus 512 r~Gn~V~ly~dg~~~~~~~p~i~l~~g~~y~~~~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~ 591 (1148)
..++.++++.++. +.|.++.++|++|+++|+|+.| ++.++. .+..+.++|.
T Consensus 57 ~~~~~~~~l~~~~--------------------~~~~~~~~~i~~a~~~I~~~~~-------i~~~d~--~~~~i~~~l~ 107 (438)
T COG1502 57 ISGNGVDLLKDGA--------------------DAFAALIELIEAAKKSIYLQYY-------IWQDDE--LGREILDALI 107 (438)
T ss_pred CCCCceEEecCHH--------------------HHHHHHHHHHHHHhhEEEEEEE-------EEeCCh--hHHHHHHHHH
Confidence 6788999999886 7899999999999999999887 666654 7899999999
Q ss_pred HhhhcCCcEEEEEecCCCcccccccccccccccccHHHHHHhhcCCc-EEEEccCcccccccccccccccccccccceEE
Q 001130 592 SKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSV-KVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTV 670 (1148)
Q Consensus 592 ~kA~rGVkVrILVwD~~~s~~~~g~k~~g~m~t~~~et~~~l~~~gV-~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiV 670 (1148)
++|++||+||+|+ |+.++...+ .......++++++ ++..+.+..... ......+.++|+|++
T Consensus 108 ~~a~~gv~vr~l~-D~~~~~~~~-----------~~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~~r~H~K~~ 170 (438)
T COG1502 108 EAAKRGVEVRLLL-DDIGSTRGL-----------LKSLLALLKRAGIEEVRLFNPASPRP-----LRFRRLNRRLHRKIV 170 (438)
T ss_pred HHHHcCCEEEEEE-ecCCCcccc-----------cHHHHHHHhcCCceEEEecCCccccc-----chhhhhhccccceEE
Confidence 9999999999996 887752111 1235567788898 666654332110 012335689999999
Q ss_pred EEcCCCCCCCccEEEEECCccCCCCCCCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCHHHHHHHH
Q 001130 671 IVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLT 750 (1148)
Q Consensus 671 VVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~H~l~d~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GPaa~Dl~~ 750 (1148)
|||++ ++|+||.|+.+.++... ....+|+|++++++||+|.++..
T Consensus 171 viD~~--------i~~vGg~N~~d~y~~~~---------------------------~~~~~~~D~~~~~~g~~v~~l~~ 215 (438)
T COG1502 171 VIDGK--------VAFVGGANIGDEYFHKD---------------------------KGLGYWRDLHVRITGPAVADLAR 215 (438)
T ss_pred EEcCC--------EEEecCcccchhhhccC---------------------------cCcccceeeeEEEECHHHHHHHH
Confidence 99995 99999999999876421 02358999999999999999999
Q ss_pred HHHHHHHhhcCCCCccccCCchhhhhhhccCCCccCCCCCCCcccCCCCCceEEEEeecCCcccccCCCChhhhcccccc
Q 001130 751 NFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLV 830 (1148)
Q Consensus 751 ~F~qrWn~~t~~~~~~~l~~~~~~l~~~~~~p~~~~~~~~p~~~~~~~~~~~vQvlRS~~~~s~~~~P~~P~~~~~~~l~ 830 (1148)
+|.++|+....... .+. .. ..+... .. . .........+|++.+.+... .
T Consensus 216 ~f~~~w~~~~~~~~--~~~---~~-----~~~~~~--~~-~--~~~~~~~~~~~~~~~~P~~~--------~-------- 264 (438)
T COG1502 216 LFIQDWNLESGSSK--PLL---AL-----VRPPLQ--SL-S--LLPVGRGSTVQVLSSGPDKG--------L-------- 264 (438)
T ss_pred HHHHHhhhccCcCc--ccc---cc-----cccccc--cc-c--ccccccCcceEEEecCCccc--------c--------
Confidence 99999998743210 000 00 000000 00 0 00011122357766642210 0
Q ss_pred cCcccchhhHHHHHHHHHHHhhccEEEEEEeEeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCC
Q 001130 831 CGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWP 910 (1148)
Q Consensus 831 ~g~~~~~e~sI~~Ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~P 910 (1148)
+.. ...+...|+.+|.+|+++|+|++|||+++. ++..+|..+ +.+||+|+|++|..
T Consensus 265 -~~~---~~~~~~~~~~~i~~A~~~i~i~~pYf~~~~-----------------~~~~al~~a--~~~Gv~V~ii~~~~- 320 (438)
T COG1502 265 -GSE---LIELNRLLLKAINSARESILIATPYFVPDR-----------------ELLAALKAA--ARRGVDVRIIIPSL- 320 (438)
T ss_pred -chh---hhhHHHHHHHHHHhhceEEEEEcCCcCCCH-----------------HHHHHHHHH--HhcCCEEEEEeCCC-
Confidence 000 112558999999999999999999999874 455555544 47999999999953
Q ss_pred CCCCCCcchhHHHHHHHHhHhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcc
Q 001130 911 EGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRK 990 (1148)
Q Consensus 911 eg~p~~~s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~L~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 990 (1148)
+..+..+++|..+ .++..|.+.|++++..+
T Consensus 321 -----~~~d~~~~~~~~~-------~~~~~l~~~gv~i~~~~-------------------------------------- 350 (438)
T COG1502 321 -----GANDSAIVHAAYR-------AYLKELLEAGVKVYEYP-------------------------------------- 350 (438)
T ss_pred -----CCCChHHHHHHHH-------HHHHHHHHhCCEEEEec--------------------------------------
Confidence 1335566665544 57899999999875310
Q ss_pred cCCcc-eeeeeEEEEEeCeEEEEcccccccccCCCCCCcceEEEEeCcchh
Q 001130 991 SGRFM-IYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1040 (1148)
Q Consensus 991 ~r~~~-IYVHSKlmIVDD~~viIGSANLN~RSm~G~~DsEiav~i~dp~~~ 1040 (1148)
. .++|+|+|||||++++|||+|||.||+. .|+|++++|+|+++.
T Consensus 351 ----~g~~lH~K~~iiD~~~~~vGS~N~~~rS~~--lN~E~~~~i~d~~~~ 395 (438)
T COG1502 351 ----GGAFLHSKVMIIDDRTVLVGSANLDPRSLR--LNFEVGLVIEDPELA 395 (438)
T ss_pred ----CCCcceeeEEEEcCCEEEEeCCcCCHhHHH--HhhhheeEEeCHHHH
Confidence 1 3899999999999999999999999999 899999999998653
No 10
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=100.00 E-value=1e-32 Score=325.22 Aligned_cols=352 Identities=16% Similarity=0.162 Sum_probs=223.3
Q ss_pred CccccCCeeEecccccCCCCCCCceeecCCCccchhHHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHH
Q 001130 509 FPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGE 588 (1148)
Q Consensus 509 ~P~r~Gn~V~ly~dg~~~~~~~p~i~l~~g~~y~~~~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~d 588 (1148)
+|. .++.|+++.+|. ++|++|+++|++||++|+|++| ++.+|+ .|..|.+
T Consensus 20 ~~~-~~~~v~~l~~~~--------------------~f~~~Ll~~I~~Ak~~I~l~~y-------~~~~D~--~g~~il~ 69 (451)
T PRK09428 20 IPQ-SPDDVETLYSPA--------------------DFRETLLEKIASAKKRIYIVAL-------YLEDDE--AGREILD 69 (451)
T ss_pred ccc-CcccEEEEcCHH--------------------HHHHHHHHHHHhcCCeEEEEEE-------EecCCc--hHHHHHH
Confidence 344 567899999986 7899999999999999999999 445553 7899999
Q ss_pred HHHHhh--hcCCcEEEEEecCCC-cccccccccccccccccHHHHHHhhc--CCcEEEEcc-Cccccccccccccccccc
Q 001130 589 LLRSKS--QEGVRVLLLVWDDPT-SRSILGYKMDGVMQTHDEETRRVFKH--SSVKVLLCP-RIAGKRHSWAKQKEVGTI 662 (1148)
Q Consensus 589 lL~~kA--~rGVkVrILVwD~~~-s~~~~g~k~~g~m~t~~~et~~~l~~--~gV~v~l~p-~~~~~~~~~~~~~~~~~~ 662 (1148)
+|.+|+ ++||+|+||+ |... .++..|... . .........++. +||++.++. +.. ....+
T Consensus 70 AL~~a~~~~~gv~VrvLv-D~~Ra~Rg~iG~~~---~-~~~~~~~~~l~~~~~gv~v~~f~~p~~----------~~e~~ 134 (451)
T PRK09428 70 ALYQAKQQNPELDIKVLV-DWHRAQRGLIGAAA---S-NTNADWYCEMAQEYPGVDIPVYGVPVN----------TREAL 134 (451)
T ss_pred HHHHHHhcCCCcEEEEEE-EcccccccccccCC---C-CcCHHHHHHHHHhCCCceEEEcCCccc----------cchhh
Confidence 999874 5899999997 8642 111111100 0 011233344443 368988772 211 01245
Q ss_pred ccccceEEEEcCCCCCCCccEEEEECCccCCCCCCCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcC
Q 001130 663 YTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDG 742 (1148)
Q Consensus 663 ~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~H~l~d~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~G 742 (1148)
.++|+|++|||++ |+|+| .||.+.|+... . ....|..++|+|
T Consensus 135 gr~HrKi~IiD~~--------v~ysG-aNi~d~Yl~~~---------------------------~--~~r~Dry~~i~g 176 (451)
T PRK09428 135 GVLHLKGFIIDDT--------VLYSG-ASLNNVYLHQH---------------------------D--KYRYDRYHLIRN 176 (451)
T ss_pred hhceeeEEEECCC--------EEEec-ccccHHHhcCC---------------------------c--ccCcceEEEEeC
Confidence 6899999999996 99987 79999765310 0 112377888999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCccccCC--------chhhhhhh-ccCCCccCCCCCCCcccCCCCCceEEEEeecCCcc
Q 001130 743 PAAYDVLTNFEERWRKASKPHGIKKLKS--------GDDALLRI-ERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTS 813 (1148)
Q Consensus 743 Paa~Dl~~~F~qrWn~~t~~~~~~~l~~--------~~~~l~~~-~~~p~~~~~~~~p~~~~~~~~~~~vQvlRS~~~~s 813 (1148)
|++.++...|++.|..++... ..+.. ........ ..... ...... .. .+.-.+++...+.
T Consensus 177 ~~la~~~~~fi~~~~~~~~~v--~~l~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~--~~-~~~~~~~v~p~~g--- 245 (451)
T PRK09428 177 AELADSMVNFIQQNLLNSPAV--NRLDQPNRPKTKEIKNDIRQFRQRLRD---AAYQFQ--GQ-ANNDELSVTPLVG--- 245 (451)
T ss_pred chHHHHHHHHHHHHhhccCcc--ccccccccccchhhHHHHHHHHHHHhh---hccCcc--cc-cCCCCeEEeeeec---
Confidence 999999999999998754321 00100 00000000 00000 000000 00 0001122222110
Q ss_pred cccCCCChhhhcccccccCcccchhhHHHHHHHHHHHhhccEEEEEEeEeecCCCCcccccccCcCCccHHHHHHHHHHH
Q 001130 814 VRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADK 893 (1148)
Q Consensus 814 ~~~~P~~P~~~~~~~l~~g~~~~~e~sI~~Ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~a 893 (1148)
.|+ ...+...++.+|..|++.|+|.++||+++. .+..+|..+
T Consensus 246 -----------------~g~----~~~l~~~~~~li~~A~~~i~I~TPYF~p~~-----------------~l~~~L~~a 287 (451)
T PRK09428 246 -----------------LGK----KNLLNKTIFHLMASAEQKLTICTPYFNLPA-----------------ILVRNIIRL 287 (451)
T ss_pred -----------------cCC----chHHHHHHHHHHhccCcEEEEEeCCcCCCH-----------------HHHHHHHHH
Confidence 011 136788999999999999999999999874 455566555
Q ss_pred HHcCCCcEEEEEecCCCCCCCCCcchhHHHHHHHHhHhhHHHH----H---HHHHHHcC---CceeecccccccccccCC
Q 001130 894 IRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYET----I---YKALVEVG---LEGAFSPQDYLNFFCLGN 963 (1148)
Q Consensus 894 i~a~rgv~V~IVlP~~Peg~p~~~s~~~il~~~~rTm~~~~~s----i---~~~L~~~G---v~~~~~P~~Yl~f~~L~~ 963 (1148)
+ ++|++|.||+|..-..+.....+++++.|.... ..|+. + +..|.++| ++++.+
T Consensus 288 ~--~rGv~V~Ii~~~~~andfy~~~d~~~~~~~~~p--y~ye~~lr~f~~~~~~li~~G~l~v~i~~~------------ 351 (451)
T PRK09428 288 L--RRGKKVEIIVGDKTANDFYIPPDEPFKIIGALP--YLYEINLRRFAKRLQYYIDNGQLNVRLWKD------------ 351 (451)
T ss_pred H--hcCCcEEEEcCCcccccCcCCCccHHHHhhhhH--HHHHHhhhhhHHHhhhhhhcCcceEEEEec------------
Confidence 3 689999999997532222222455666554432 11111 1 22455666 544320
Q ss_pred cccccccCCCCCCCCCCCCchhhhhcccCCcceeeeeEEEEEeCeEEEEcccccccccCCCCCCcceEEEEeCcchh
Q 001130 964 REVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1040 (1148)
Q Consensus 964 r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~IYVHSKlmIVDD~~viIGSANLN~RSm~G~~DsEiav~i~dp~~~ 1040 (1148)
..-.+|+|.|+|||+|++|||+|||.||+. +|.|++++|+|+...
T Consensus 352 ------------------------------~~~~~HaK~i~vD~~~~~iGS~Nld~RS~~--ln~E~~l~i~d~~~~ 396 (451)
T PRK09428 352 ------------------------------GDNSYHLKGIWVDDRWMLLTGNNLNPRAWR--LDLENALLIHDPKQE 396 (451)
T ss_pred ------------------------------CCCcceEEEEEEeCCEEEEcCCCCChhHhh--hcccceEEEECChHH
Confidence 023689999999999999999999999998 999999999998743
No 11
>PHA02820 phospholipase-D-like protein; Provisional
Probab=100.00 E-value=8.2e-32 Score=316.50 Aligned_cols=325 Identities=16% Similarity=0.189 Sum_probs=210.3
Q ss_pred HHHHHHHHHHHHhccceEEEEeeccceeeEEeCC-CCchHHHHHHHHHHhhhcCCcEEEEEecCCCcccccccccccccc
Q 001130 545 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDA-SPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQ 623 (1148)
Q Consensus 545 ~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~-~~~~g~~L~dlL~~kA~rGVkVrILVwD~~~s~~~~g~k~~g~m~ 623 (1148)
.+++.+.++|.+||++|+|+.+.|.+ .+. ....|.+|.++|++||+|||+||||+ |..+..
T Consensus 26 ~t~~~~~~lI~~Ak~~I~I~s~yf~~-----~d~~~~~~G~~i~~aL~~aA~rGV~VRIL~-d~~~~~------------ 87 (424)
T PHA02820 26 STFNFWREILSNTTKTLDISSFYWSL-----SDEVGTNFGTMILNEIIQLPKRGVRVRIAV-NKSNKP------------ 87 (424)
T ss_pred CHHHHHHHHHHhhCcEEEEEeEEEec-----CccccchhHHHHHHHHHHHHHCCCEEEEEE-CCCCCc------------
Confidence 57899999999999999999985432 221 12347899999999999999999986 753210
Q ss_pred cccHHHHHHhhcCCcEEEEccCcccccccccccccccccccccceEEEEcCCCCCCCccEEEEECCccCCCCCCCCCCCC
Q 001130 624 THDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHP 703 (1148)
Q Consensus 624 t~~~et~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~H~ 703 (1148)
....+.|+.+||++..+.... + ...++|+|++|||++ ++|+||+|+.+ |+-+
T Consensus 88 ---~~~~~~L~~aGv~v~~~~~~~-----~-------~~~~~HrK~~VIDg~--------~~~iGS~Nid~-rsl~---- 139 (424)
T PHA02820 88 ---LKDVELLQMAGVEVRYIDITN-----I-------LGGVLHTKFWISDNT--------HIYLGSANMDW-RSLT---- 139 (424)
T ss_pred ---hhhHHHHHhCCCEEEEEecCC-----C-------CcccceeeEEEECCC--------EEEEeCCcCCh-hhhh----
Confidence 112345778999998764321 1 235799999999996 99999999976 4321
Q ss_pred cccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEE--cCHHHHHHHHHHHHHHHhhcCCCCccccCCchhhhhhhccC
Q 001130 704 LFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKI--DGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERI 781 (1148)
Q Consensus 704 l~d~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI--~GPaa~Dl~~~F~qrWn~~t~~~~~~~l~~~~~~l~~~~~~ 781 (1148)
..+|+++++ +|++|.+|.+.|.+.|+..++... . .+.. ..
T Consensus 140 ----------------------------~n~E~gv~i~~~g~~v~~L~~~F~~dW~~~~~~~~-~---~~~~------~~ 181 (424)
T PHA02820 140 ----------------------------QVKELGIAIFNNSNLAADLTQIFEVYWYLGVNNLP-Y---NWKN------FY 181 (424)
T ss_pred ----------------------------hCCceEEEEecchHHHHHHHHHHHHHHHhhccCCC-C---cccc------cc
Confidence 114677777 799999999999999997653210 0 0000 00
Q ss_pred CCccCCCCCCCcccCCCCCceEEEEeecCCcccccCCCChhhhcccccccCcccchhhHHHHHHHHHHHhhccEEEEEEe
Q 001130 782 PGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQ 861 (1148)
Q Consensus 782 p~~~~~~~~p~~~~~~~~~~~vQvlRS~~~~s~~~~P~~P~~~~~~~l~~g~~~~~e~sI~~Ayl~aI~~Ak~fIYIENQ 861 (1148)
|.... ...|. .....+....+++.+. |... ...+ .....++|+.+|.+||++|||+++
T Consensus 182 ~~~~~-~~~p~-~~~~~~~~~~~~~sss-----------P~~~----~~~~-----r~~~~~~~l~~I~~Ak~~I~I~tp 239 (424)
T PHA02820 182 PLYYN-TDHPL-SLNVSGVPHSVFIASA-----------PQQL----CTME-----RTNDLTALLSCIRNASKFVYVSVM 239 (424)
T ss_pred ccccc-cCCCc-ccccCCccceEEEeCC-----------Chhh----cCCC-----CCchHHHHHHHHHHHhhEEEEEEc
Confidence 10000 00000 0000111112333332 1100 0000 123579999999999999999999
Q ss_pred EeecCCC-------CcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCcchhHHHHHHHHhHhhHH
Q 001130 862 YFIGSSY-------NWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMY 934 (1148)
Q Consensus 862 YFi~~~~-------~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p~~~s~~~il~~~~rTm~~~~ 934 (1148)
||+|+.+ .|+ .|..+|.+|. +.|||+|+||+|.|++ ...+.|+.
T Consensus 240 yfvP~~~~~~~~~~yw~-------------~i~~AL~~AA-~~RGV~VriLvp~~~d--------~~~~~~a~------- 290 (424)
T PHA02820 240 NFIPIIYSKAGKILFWP-------------YIEDELRRAA-IDRKVSVKLLISCWQR--------SSFIMRNF------- 290 (424)
T ss_pred cccceeeccCCcccchH-------------HHHHHHHHHH-HhCCCEEEEEEeccCC--------CCccHHHH-------
Confidence 9999821 232 3455554321 3799999999999863 22333332
Q ss_pred HHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCCcceeeeeEEEEEeCeEEEEcc
Q 001130 935 ETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGS 1014 (1148)
Q Consensus 935 ~si~~~L~~~Gv~~~~~P~~Yl~f~~L~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~IYVHSKlmIVDD~~viIGS 1014 (1148)
...++.|.++|++++. .+|....+. ..-....++|||+||||| ++.|||
T Consensus 291 ~~~l~~L~~~gv~I~V------k~y~~p~~~------------------------~~~~~~~f~HaK~~vvD~-~a~IGT 339 (424)
T PHA02820 291 LRSIAMLKSKNINIEV------KLFIVPDAD------------------------PPIPYSRVNHAKYMVTDK-TAYIGT 339 (424)
T ss_pred HHHHHHHhccCceEEE------EEEEcCccc------------------------ccCCcceeeeeeEEEEcc-cEEEEC
Confidence 2457888889988741 112110000 000013589999999997 699999
Q ss_pred cccccccCCCCCCcceEEEEeCc
Q 001130 1015 ANINQRSMEGTRDTEIAMGAYQP 1037 (1148)
Q Consensus 1015 ANLN~RSm~G~~DsEiav~i~dp 1037 (1148)
||||.|||. .+.|+++.+++.
T Consensus 340 sN~D~rsf~--~n~ev~~~i~~~ 360 (424)
T PHA02820 340 SNWTGNYFT--DTCGVSINITPD 360 (424)
T ss_pred CcCCHHHHh--ccCcEEEEEecC
Confidence 999999998 899999999986
No 12
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=100.00 E-value=5.3e-31 Score=305.72 Aligned_cols=318 Identities=16% Similarity=0.183 Sum_probs=204.3
Q ss_pred HHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHHhhhcCCcEEEEEecCCCccccccccccccccc
Q 001130 545 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQT 624 (1148)
Q Consensus 545 ~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILVwD~~~s~~~~g~k~~g~m~t 624 (1148)
.+|++++++|++||++|+|+.|.+ .++++ ..+.+|.++|++||+|||+||||+ |..++
T Consensus 31 ~~~~~l~~~I~~Ak~~I~i~~yi~-----~~~~d--~~g~~i~~aL~~aa~rGV~Vril~-D~~~~-------------- 88 (369)
T PHA03003 31 STYECFDEIISQAKKYIYIASFCC-----NLRST--PEGRLILDKLKEAAESGVKVTILV-DEQSG-------------- 88 (369)
T ss_pred CHHHHHHHHHHhhhhEEEEEEEEe-----cccCC--chHHHHHHHHHHhccCCCeEEEEe-cCCCC--------------
Confidence 579999999999999999999942 13444 378999999999999999999996 87542
Q ss_pred ccHHHHHHhhcCCcEEEEccCcccccccccccccccccccccceEEEEcCCCCCCCccEEEEECCccCCCCCCCCCCCCc
Q 001130 625 HDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPL 704 (1148)
Q Consensus 625 ~~~et~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~H~l 704 (1148)
....+.|+..||+++.+.... ++..+..|.|++|||++ +||+||+||+++++.. .
T Consensus 89 --~~~~~~L~~~Gv~v~~~~~~~-----------~~~~~~~~~k~~IiDg~--------~~y~Gg~Ni~~~~~~~-~--- 143 (369)
T PHA03003 89 --DKDEEELQSSNINYIKVDIGK-----------LNNVGVLLGSFWVSDDR--------RCYIGNASLTGGSIST-I--- 143 (369)
T ss_pred --CccHHHHHHcCCEEEEEeccc-----------cCCCCceeeeEEEEcCc--------EEEEecCccCCcccCc-c---
Confidence 123456788899987653211 00012357899999996 9999999999975532 1
Q ss_pred ccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCHHHHHHHHHHHHHHHhhcCCCCccccCCchhhhhhhccCCCc
Q 001130 705 FRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIPGI 784 (1148)
Q Consensus 705 ~d~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GPaa~Dl~~~F~qrWn~~t~~~~~~~l~~~~~~l~~~~~~p~~ 784 (1148)
...+.|+|. ||+|.+|+..|.+.|+.++++....+.. .. ...+..
T Consensus 144 -----------------------~~~g~~~d~-----g~~v~~l~~~F~~~w~~~~~~~~~~~~~-----~~--~~~~~~ 188 (369)
T PHA03003 144 -----------------------KTLGVYSTY-----PPLATDLRRRFDTFKAFNKNKSVFNRLC-----CA--CCLPVS 188 (369)
T ss_pred -----------------------ccceeEecC-----cHHHHHHHHHHHHHHHhcCCCCcccccc-----cc--cCCccc
Confidence 123578883 9999999999999999765432000000 00 000000
Q ss_pred cCCCCCCCcccCCCCCceEEEEeecCCcccccCCCChhhhcccccccCcccchhhHHHHHHHHHHHhhccEEEEEEeEee
Q 001130 785 IGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFI 864 (1148)
Q Consensus 785 ~~~~~~p~~~~~~~~~~~vQvlRS~~~~s~~~~P~~P~~~~~~~l~~g~~~~~e~sI~~Ayl~aI~~Ak~fIYIENQYFi 864 (1148)
. + .....+ ...+++.+ .|... .+. ....++++|+++|.+||++|+|+++||+
T Consensus 189 ~-----~-~~~~~~--~~~~~~~s-----------~P~~~------~~~---~~~~~~~~ll~~I~~Ak~~I~I~t~yf~ 240 (369)
T PHA03003 189 T-----K-YHINNP--IGGVFFSD-----------SPEHL------LGY---SRTLDADVVLHKIKSAKKSIDLELLSLV 240 (369)
T ss_pred c-----c-ccccCC--CcceEEec-----------CChHH------cCC---CCCcCHHHHHHHHHHHhhEEEEEEeccc
Confidence 0 0 000001 01122222 11110 000 0124789999999999999999999998
Q ss_pred cCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCcchhHHHHHHHHhHhhHHHHHHHHHHHc
Q 001130 865 GSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEV 944 (1148)
Q Consensus 865 ~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p~~~s~~~il~~~~rTm~~~~~si~~~L~~~ 944 (1148)
+.....+ . . ....++..+|.+|. ++|||+|+||+|.+... +. ....+++.|+++
T Consensus 241 P~~~~d~----~-~--~~~~~i~~AL~~AA-a~RGV~VRILv~~~~~~------~~------------~~~~~~~~L~~~ 294 (369)
T PHA03003 241 PVIREDD----K-T--TYWPDIYNALIRAA-INRGVKVRLLVGSWKKN------DV------------YSMASVKSLQAL 294 (369)
T ss_pred cEEeeCC----C-C--ccHHHHHHHHHHHH-HcCCCEEEEEEecCCcC------Cc------------hhhhHHHHHHHc
Confidence 7521100 0 0 00124555555431 27999999999975311 10 012367889999
Q ss_pred CCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCCcceeeeeEEEEEeCeEEEEcccccccccCCC
Q 001130 945 GLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEG 1024 (1148)
Q Consensus 945 Gv~~~~~P~~Yl~f~~L~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~IYVHSKlmIVDD~~viIGSANLN~RSm~G 1024 (1148)
|+.... .+.+| ....|+|+|||||++++|||+||+.||+.
T Consensus 295 G~~~~i----~vri~-----------------------------------~~~~H~K~~VVD~~~a~iGS~N~d~~s~~- 334 (369)
T PHA03003 295 CVGNDL----SVKVF-----------------------------------RIPNNTKLLIVDDEFAHITSANFDGTHYL- 334 (369)
T ss_pred CCCCCc----eEeee-----------------------------------cCCCCceEEEEcCCEEEEeccccCchhhc-
Confidence 954210 00001 00169999999999999999999999998
Q ss_pred CCCcceEEEEeCcch
Q 001130 1025 TRDTEIAMGAYQPEY 1039 (1148)
Q Consensus 1025 ~~DsEiav~i~dp~~ 1039 (1148)
.+.|+++.+.++..
T Consensus 335 -~~~e~~~~~~~~~~ 348 (369)
T PHA03003 335 -HHAFVSFNTIDKEL 348 (369)
T ss_pred -cCCCeEEecCChhH
Confidence 78999888777654
No 13
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.93 E-value=1.5e-26 Score=276.51 Aligned_cols=178 Identities=19% Similarity=0.298 Sum_probs=148.9
Q ss_pred cCCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeece--------------
Q 001130 285 LSSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG-------------- 347 (1148)
Q Consensus 285 ~~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~G-------------- 347 (1148)
...+.+|+.||.++|+ +| |+|.|||||||+|+.+|. +||||||+ |+.++.+||.+|
T Consensus 374 ~~~~~~~v~~nk~~L~RIY---PkG~RvdSSNynP~~~W~----~GcQMVALN~Qt~d~~M~LN~G~F~~NG~CGYVLKP 446 (598)
T PLN02230 374 ASYGADVIRFTQKNFLRIY---PKGTRFNSSNYKPQIGWM----SGAQMIAFNMQGYGRALWLMEGMFRANGGCGYVKKP 446 (598)
T ss_pred HhhhHHHHHhhhhhceeeC---CCCCcCCCCCCCchhHhc----CceEEeeecccCCChHHHhhcchhccCCCCCceECC
Confidence 4677899999999999 99 999999999999997777 99999999 999998887777
Q ss_pred -----------------------EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEeee
Q 001130 348 -----------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTF 400 (1148)
Q Consensus 348 -----------------------tL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~RTk 400 (1148)
+|+|+|++|.+|+. ++...+++.+.. .||||+|.|.| ...+||+
T Consensus 447 ~~Lr~~~~~~~~fdP~~~~~~~~~L~V~VisGq~~~l-~~~k~~~~~~s~--------~DpyV~Vei~Gvp~D~~~~kT~ 517 (598)
T PLN02230 447 DFLMDAGPNGQDFYPKDNSCPKKTLKVKVCMGDGWLL-DFKKTHFDSYSP--------PDFFVRVGIAGAPVDEVMEKTK 517 (598)
T ss_pred HHhcCCCccccccCCCcCCCcCcEEEEEEEEccCccC-CCccccCCCCCC--------CCceEEEEEEECCCCCccccee
Confidence 58899999999862 222222222322 79999999976 3335999
Q ss_pred eeeCCCCCeeceEEEEEecCCC-ceEEEEEEEccC-CCCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEE
Q 001130 401 VISNSEDPVWQQHFYVPVAHSA-AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTL 478 (1148)
Q Consensus 401 vi~nt~NPvWNE~F~f~v~~~~-~~L~~~V~D~D~-~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L 478 (1148)
|+.|++||+|||+|.|++..++ +.|+|+|+|+|. .+++|||+++|||++|+.|. +.++|++.+|.++.. .+|.+
T Consensus 518 v~~n~~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~~-~~Ll~ 593 (598)
T PLN02230 518 IEYDTWTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYSS-TRLLM 593 (598)
T ss_pred ccCCCCCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCCC-CeeEE
Confidence 9999999999999999998886 899999999998 57899999999999999997 579999999998763 35555
Q ss_pred EEEE
Q 001130 479 SIQY 482 (1148)
Q Consensus 479 ~l~f 482 (1148)
+++|
T Consensus 594 ~f~~ 597 (598)
T PLN02230 594 RFEF 597 (598)
T ss_pred EEEe
Confidence 5554
No 14
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.93 E-value=1.7e-26 Score=274.85 Aligned_cols=177 Identities=25% Similarity=0.354 Sum_probs=151.4
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeece---------------
Q 001130 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG--------------- 347 (1148)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~G--------------- 347 (1148)
..+.+|+.||.+.|+ +| |++.|+|||||+|+.+|. +||||||+ |++++.++|++|
T Consensus 524 ~~~~~~v~~t~r~L~RvY---P~~~R~dSSNynPq~~W~----~G~QmVAlN~Qt~G~~l~L~~G~Fr~NGgCGYVlKP~ 596 (746)
T KOG0169|consen 524 EYGPDFVRHTQRNLLRVY---PKGLRVDSSNYNPQEFWN----HGCQMVALNFQTPGRMLDLNQGMFRANGGCGYVLKPD 596 (746)
T ss_pred HhhhHHHHHhHhheeeec---CCccccCCCCCChHHHHh----cCceEEEEecCCCChhhhhhhhhhccCCCccceECcH
Confidence 567799999999999 99 999999999999996666 99999999 999999999988
Q ss_pred --------------------EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE----EEEeee-ee
Q 001130 348 --------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA----VVGRTF-VI 402 (1148)
Q Consensus 348 --------------------tL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~----~~~RTk-vi 402 (1148)
+|+|+|++|+++.. ++..++++++ +||||.|+|.|. ...+|+ |.
T Consensus 597 ~L~~~~~~F~P~~~~~~~~~tL~IkI~sGq~~~~-~~~~~~~~~~----------~dP~v~VeI~Gvp~D~~~~~Tk~v~ 665 (746)
T KOG0169|consen 597 FLLDSGSTFDPKSNLPPVKKTLKIKIISGQGWLP-DFGKTKFGEI----------SDPDVYVEIAGVPADCAEQKTKVVK 665 (746)
T ss_pred HHcCCCCccCCCCCCCCCCceeEEEEEecCcccC-CCCCCccccc----------CCCCEEEEEcccccchhhhhceeec
Confidence 69999999998873 3333322222 799999999873 335999 55
Q ss_pred eCCCCCeeceEEEEEecCCC-ceEEEEEEEccCCC-CcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEE
Q 001130 403 SNSEDPVWQQHFYVPVAHSA-AEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSI 480 (1148)
Q Consensus 403 ~nt~NPvWNE~F~f~v~~~~-~~L~~~V~D~D~~~-ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l 480 (1148)
.|++||.|+|+|+|.+..++ +.|+|.|+|+|..+ |||+||++||+++|..|. +.++|++..|+.+.. .+|.+++
T Consensus 666 ~NgfnP~W~e~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~~~~-asLfv~i 741 (746)
T KOG0169|consen 666 NNGFNPIWDEEFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGY---RHVPLLSREGEALSS-ASLFVRI 741 (746)
T ss_pred cCCcCcccCCeEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHhhCce---eeeeecCCCCccccc-eeEEEEE
Confidence 66999999999999999987 99999999999966 999999999999999997 559999999998753 4777777
Q ss_pred EEec
Q 001130 481 QYTP 484 (1148)
Q Consensus 481 ~f~p 484 (1148)
++.+
T Consensus 742 ~~~~ 745 (746)
T KOG0169|consen 742 AIVE 745 (746)
T ss_pred EEec
Confidence 7653
No 15
>PLN02223 phosphoinositide phospholipase C
Probab=99.93 E-value=1e-25 Score=264.85 Aligned_cols=173 Identities=21% Similarity=0.358 Sum_probs=143.1
Q ss_pred CCCcccCCCCCcc-cCCcccCCCCc-CCCCCCcccCCCCCCCCCcccccC--CCCCcceeeece----------------
Q 001130 288 PGGFYGYPNDSFS-SYPERAYLGMI-DSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG---------------- 347 (1148)
Q Consensus 288 ~~~~~~~~~~~~~-~~~~~~~~~r~-~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~G---------------- 347 (1148)
+.+|+.||.+.|+ +| |+|.|+ |||||+|+.+|+ +||||||+ |+.++.++|.+|
T Consensus 317 ~~~~v~ft~~~l~RiY---PkG~R~~dSSNYnP~~~W~----~GcQmVALN~QT~d~~M~LN~G~F~~NG~CGYVLKP~~ 389 (537)
T PLN02223 317 ERDIISFTQKKFLRTR---PKKKNLLINAPYKPQRAWM----HGAQLIALSRKDDKEKLWLMQGMFRANGGCGYVKKPDF 389 (537)
T ss_pred chhhhhhcccceEEEC---CCCCccccCCCCCChhhcc----cceeEeeeccCCCChhHHhhcchhccCCCCCceECChh
Confidence 4789999999999 99 999995 999999997777 99999999 999998887777
Q ss_pred --------------------EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEeeeeee
Q 001130 348 --------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVIS 403 (1148)
Q Consensus 348 --------------------tL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~RTkvi~ 403 (1148)
+|+|+|++|++|+ .++..++ +... ..||||+|.|.| ...+||+|..
T Consensus 390 Lr~~~~~~~FdP~~~~~~~~~L~V~Visgq~~~-~~~~k~~-~~~s--------~~DpyV~VeI~Gvp~D~~~~kT~v~n 459 (537)
T PLN02223 390 LLNAGPSGVFYPTENPVVVKILKVKIYMGDGWI-VDFKKRI-GRLS--------KPDLYVRISIAGVPHDEKIMKTTVKN 459 (537)
T ss_pred hccCCcccccCCCCCcccceEEEEEEEEccccc-CCccccc-CCCC--------CCCeEEEEEEeeccCCcceeEEEeCC
Confidence 4899999999986 3322111 1111 279999999976 2335888888
Q ss_pred CCCCCeeceEEEEEecCCC-ceEEEEEEEccC-CCCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEE
Q 001130 404 NSEDPVWQQHFYVPVAHSA-AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQ 481 (1148)
Q Consensus 404 nt~NPvWNE~F~f~v~~~~-~~L~~~V~D~D~-~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~ 481 (1148)
|++||+|||+|.|.+..++ +.|+|+|+|+|. .+++|||+++|||++|+.|. ++++|++++|+++.. .+|.+++.
T Consensus 460 Ng~nPvWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~-~~Ll~~f~ 535 (537)
T PLN02223 460 NEWKPTWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSS-TMLLTRFK 535 (537)
T ss_pred CCcCceecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCC-ceEEEEEE
Confidence 8999999999999998886 889999999998 56899999999999999997 679999999998763 34444443
No 16
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.92 E-value=4.2e-25 Score=263.94 Aligned_cols=178 Identities=19% Similarity=0.312 Sum_probs=147.7
Q ss_pred cCCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeece--------------
Q 001130 285 LSSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG-------------- 347 (1148)
Q Consensus 285 ~~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~G-------------- 347 (1148)
...+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. .||||||+ |+.++.++|.+|
T Consensus 357 ~~~~~~~v~~n~~~L~RiY---P~G~RvdSSNynP~~~W~----~G~QmVALN~QT~d~~M~LN~G~F~~NG~cGYVLKP 429 (581)
T PLN02222 357 EKYAKQIVRFTQHNLLRIY---PKGTRVTSSNYNPLVGWS----HGAQMVAFNMQGYGRSLWLMQGMFRANGGCGYIKKP 429 (581)
T ss_pred HhhhHHHHHHhhhhceeeC---CCCCcCcCCCCCchhHhc----CCcEEeeccccCCChhhhhhcchhccCCCCceEECC
Confidence 4677899999999999 99 999999999999997777 99999999 999998877666
Q ss_pred -----------------------EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEeee
Q 001130 348 -----------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTF 400 (1148)
Q Consensus 348 -----------------------tL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~RTk 400 (1148)
+|+|+|+.|.+|. .+....+++.+. ..||||+|.|.| ....||+
T Consensus 430 ~~lr~~~~~~~~fdp~~~~~~~~~L~V~Visgq~~~-l~~~~~~~~~~~--------~~dpyV~Vei~G~p~D~~~~rTk 500 (581)
T PLN02222 430 DLLLKSGSDSDIFDPKATLPVKTTLRVTIYMGEGWY-FDFRHTHFDQYS--------PPDFYTRVGIAGVPGDTVMKKTK 500 (581)
T ss_pred HHhccCCccccccCCCCCCCccceEEEEEEEccccc-CCCCccccCCCC--------CCCeeEEEEEeccCCCcceeeeE
Confidence 4889999999875 222222222222 279999999975 3335999
Q ss_pred eeeCCCCCeeceEEEEEecCCC-ceEEEEEEEccC-CCCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEE
Q 001130 401 VISNSEDPVWQQHFYVPVAHSA-AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTL 478 (1148)
Q Consensus 401 vi~nt~NPvWNE~F~f~v~~~~-~~L~~~V~D~D~-~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L 478 (1148)
++.++.||+|||+|.|.+..++ +.|+|+|+|+|. .+++|||+.+|||+.|+.|. +.++|++.+|.++.. ..|.+
T Consensus 501 ~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~~-a~Lfv 576 (581)
T PLN02222 501 TLEDNWIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYKS-VKLLV 576 (581)
T ss_pred ecCCCCCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCCC-eeEEE
Confidence 9999999999999999988776 899999999997 55899999999999999997 579999999998763 46666
Q ss_pred EEEE
Q 001130 479 SIQY 482 (1148)
Q Consensus 479 ~l~f 482 (1148)
++.|
T Consensus 577 ~~~~ 580 (581)
T PLN02222 577 KVEF 580 (581)
T ss_pred EEEe
Confidence 6655
No 17
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.92 E-value=2.5e-24 Score=222.01 Aligned_cols=142 Identities=55% Similarity=0.884 Sum_probs=126.3
Q ss_pred eeeeceEEEEEEEEeeCCCCCCCCCcccccccccc---------------CCCCCCCCcEEEEEECCEEEEeeeeeeCCC
Q 001130 342 VLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQ---------------MNTKITSDPYVTIAVAGAVVGRTFVISNSE 406 (1148)
Q Consensus 342 ~~Ll~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~---------------~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~ 406 (1148)
.+||||+|+|+|++|++|++||..+.+.++++.+. ....+++||||+|.+++.+++||++++++.
T Consensus 2 ~~llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~ 81 (158)
T cd04015 2 AVLLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSE 81 (158)
T ss_pred ceEEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCC
Confidence 46899999999999999999997655555555431 124566899999999998888999999999
Q ss_pred CCeeceEEEEEecCCCceEEEEEEEccCCCCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEEEe
Q 001130 407 DPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1148)
Q Consensus 407 NPvWNE~F~f~v~~~~~~L~~~V~D~D~~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~ 483 (1148)
||+|||+|.|.+.+..+.|.|+|+|+|..++++||++.|+++++..|...+.||+|.+.+|++.+.+++|+|+++|+
T Consensus 82 nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 82 NPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred CCccceEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 99999999999988888999999999998999999999999999999889999999998999988889999999995
No 18
>PLN02952 phosphoinositide phospholipase C
Probab=99.91 E-value=1e-24 Score=261.37 Aligned_cols=176 Identities=19% Similarity=0.307 Sum_probs=145.8
Q ss_pred cCCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeece--------------
Q 001130 285 LSSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG-------------- 347 (1148)
Q Consensus 285 ~~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~G-------------- 347 (1148)
...+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. .||||||+ |+.++.++|.+|
T Consensus 375 ~~~~~~~v~~n~~~l~RiY---P~g~R~dSsNy~P~~~W~----~G~QmVAlN~Qt~d~~m~lN~g~F~~NG~cGYVlKP 447 (599)
T PLN02952 375 TTNGQDVVRFTQRNILRIY---PKGTRITSSNYKPLIGWM----HGAQMIAFNMQGYGKSLWLMHGMFRANGGCGYLKKP 447 (599)
T ss_pred HhhHHHHHHHhhhhceeeC---CCCCcCcCCCCCchhHhc----CccEEeeecccCCChHHHhhhchhccCCCCCceECC
Confidence 3567789999999999 99 999999999999997777 99999999 988887766555
Q ss_pred -----------------------EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEeee
Q 001130 348 -----------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTF 400 (1148)
Q Consensus 348 -----------------------tL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~RTk 400 (1148)
+|+|+|++|.+|+. +...++++.+.. .||||+|.+.| ....||+
T Consensus 448 ~~lr~~~~~~~~fdp~~~~~~~~~L~V~VisGq~l~l-p~~~~~~~~~~~--------~D~yV~V~i~G~p~D~~~~kTk 518 (599)
T PLN02952 448 DFLMKKGFHDEVFDPKKKLPVKKTLKVKVYLGDGWRL-DFSHTHFDSYSP--------PDFYTKMYIVGVPADNAKKKTK 518 (599)
T ss_pred HHHcccCCcccccCCCCCCCccceEEEEEEECcccCC-CCccccCCccCC--------CCceEEEEEeccCCCCcceeee
Confidence 58899999999863 322222333332 69999999976 2335999
Q ss_pred eeeCCCCCeeceEEEEEecCCC-ceEEEEEEEccC-CCCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEE
Q 001130 401 VISNSEDPVWQQHFYVPVAHSA-AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTL 478 (1148)
Q Consensus 401 vi~nt~NPvWNE~F~f~v~~~~-~~L~~~V~D~D~-~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L 478 (1148)
++.+++||+|||+|.|.+..++ +.|+|+|+|+|. .+++|||+++|||.+|..|. +|++|++.+|++++ .++|
T Consensus 519 vi~nN~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l~---~a~L 592 (599)
T PLN02952 519 IIEDNWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKLK---NVRL 592 (599)
T ss_pred eccCCCCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCCC---CEEE
Confidence 9999999999999999988775 889999999998 45889999999999999997 69999999999775 4455
Q ss_pred EEEE
Q 001130 479 SIQY 482 (1148)
Q Consensus 479 ~l~f 482 (1148)
.|+|
T Consensus 593 lv~f 596 (599)
T PLN02952 593 LMRF 596 (599)
T ss_pred EEEE
Confidence 5555
No 19
>PLN02228 Phosphoinositide phospholipase C
Probab=99.90 E-value=8.8e-24 Score=252.11 Aligned_cols=180 Identities=21% Similarity=0.319 Sum_probs=148.6
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeece---------------
Q 001130 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG--------------- 347 (1148)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~G--------------- 347 (1148)
..+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. .||||||+ |+.+..++|.+|
T Consensus 340 ~~~~~~v~hNkr~l~RvY---P~g~RvdSSNy~P~~~W~----~G~QmVALN~QT~d~~M~lN~g~F~~NG~cGYVLKP~ 412 (567)
T PLN02228 340 TRGTDLVRFTQRNLVRIY---PKGTRVDSSNYDPHVGWT----HGAQMVAFNMQGHGKQLWIMQGMFRANGGCGYVKKPR 412 (567)
T ss_pred hhHHHHHHHhhhhceeeC---CCCCcCCCCCCCchhHhc----CccEEeeecccCCChHHHhhcCchhhCCCCCceeCch
Confidence 466889999999999 99 999999999999997777 99999999 999987776655
Q ss_pred -------------------EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE----EEEeeeeeeC
Q 001130 348 -------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA----VVGRTFVISN 404 (1148)
Q Consensus 348 -------------------tL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~----~~~RTkvi~n 404 (1148)
+|+|+|++|++|+ .++...+++.+. ..||||+|.+.|. ...||+++.+
T Consensus 413 ~Lr~~~~~f~p~~~~p~~~~L~I~ViSGq~l~-lp~~~~~~~~~~--------~~DpyV~Vei~G~p~D~~~~rTk~~~n 483 (567)
T PLN02228 413 ILLDEHTLFDPCKRLPIKTTLKVKIYTGEGWD-LDFHLTHFDQYS--------PPDFFVKIGIAGVPRDTVSYRTETAVD 483 (567)
T ss_pred hhcccccccCCccCCCcCceEEEEEEECCccC-CCCCCCCCCCCC--------CCCcEEEEEEEecCCCCCcceeeccCC
Confidence 4899999999984 222111111111 2799999999652 2249999999
Q ss_pred CCCCee-ceEEEEEecCCC-ceEEEEEEEccC-CCCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEE
Q 001130 405 SEDPVW-QQHFYVPVAHSA-AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQ 481 (1148)
Q Consensus 405 t~NPvW-NE~F~f~v~~~~-~~L~~~V~D~D~-~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~ 481 (1148)
+.||+| ||+|.|.+..++ +.|+|+|+|+|. .+++|||+++|||+.|+.|. +.++|++..|+.+. .++|.+++.
T Consensus 484 ~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~-~atLfv~~~ 559 (567)
T PLN02228 484 QWFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYK-NTRLLVSFA 559 (567)
T ss_pred CCCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCC-CeEEEEEEE
Confidence 999999 999999988776 899999999986 56899999999999999997 57999999999875 357888888
Q ss_pred Eecc
Q 001130 482 YTPM 485 (1148)
Q Consensus 482 f~p~ 485 (1148)
+.+.
T Consensus 560 ~~~~ 563 (567)
T PLN02228 560 LDPP 563 (567)
T ss_pred EcCc
Confidence 7653
No 20
>PF12357 PLD_C: Phospholipase D C terminal ; InterPro: IPR024632 Phospholipase D (PLD) catalyses the hydrolysis of the phosphodiester bond of glycerophospholipids to generate phosphatidic acid and a free head group. Phospholipase D activities have been detected in simple to complex organisms from viruses and bacteria to yeast, plants, and mammals []. In higher organisms, PLD specifically catalyzes the hydrolysis of phosphatidylcholine (PC) to phosphatidic acid (PA) and choline and is activated in response to stimulators of vesicle transport, endocytosis, exocytosis, cell migration, and mitosis. This entry represents the C-terminal domain of eukaryotic phospholipase D. The domain is approximately 70 amino acids in length and contains a conserved FPD sequence motif.
Probab=99.85 E-value=4.1e-22 Score=175.40 Aligned_cols=72 Identities=54% Similarity=1.156 Sum_probs=70.5
Q ss_pred ccccCCCcchhHHHHHhhhhhhhhhhhhhhhhcccccccccCcceeCCCCCccCCCCCCCCCCCCCcccccc
Q 001130 1068 EDCFGQPETLECVRKVRSVGENNWQQFAADDQSEMRSHLIKYPVEVDRKGKVRPIPGYETFPDVGGNIVGSF 1139 (1148)
Q Consensus 1068 ~~~f~~p~s~~~~~~v~~~~~~nw~~~a~~~~~~~~ghL~~~p~~~~~~g~~~~~~g~~~fpd~~~~i~g~~ 1139 (1148)
++.|.+|+|++||++||++|++||++|+++++++|+||||+||+.|+.||+|++|||+++||||+|+|+|++
T Consensus 2 e~~F~~PesleCVr~Vn~iae~nW~~y~~ee~~dl~GHLl~YPv~V~~dG~V~~LpG~e~FPDt~~~VlG~~ 73 (74)
T PF12357_consen 2 EECFLEPESLECVRRVNEIAEENWKQYASEEVTDLPGHLLKYPVQVDRDGKVTPLPGCEFFPDTGGKVLGSK 73 (74)
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHhhccccccCCCccccCCeEEcCCCCEeeCCCCCcCCCCCCcccCCC
Confidence 678999999999999999999999999999999999999999999999999999999999999999999986
No 21
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.85 E-value=8.1e-21 Score=187.34 Aligned_cols=118 Identities=22% Similarity=0.387 Sum_probs=104.5
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeC-CCCCeeceEEEEEecCCCce
Q 001130 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISN-SEDPVWQQHFYVPVAHSAAE 424 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~n-t~NPvWNE~F~f~v~~~~~~ 424 (1148)
+|+|+|+|++|++|++.+ +|+ +||||+|.++++++ ||+|+.+ +.||+|||+|.|.+.+....
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~---------------sDPYv~i~lg~~~~-kT~v~~~~~~nP~WNe~F~f~v~~~~~~ 63 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTR---------------MDPYCRIRVGHAVY-ETPTAYNGAKNPRWNKTIQCTLPEGVDS 63 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCC---------------CCceEEEEECCEEE-EeEEccCCCCCCccCeEEEEEecCCCcE
Confidence 489999999999998777 565 89999999999887 9999877 89999999999999877778
Q ss_pred EEEEEEEccCCC-CcceeeEEEece-eeccCCcccceeeeccCCCCCCCCCCcEEEEEEE
Q 001130 425 VHFFVKDSDVVG-SELIGTVAIPVE-QIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1148)
Q Consensus 425 L~~~V~D~D~~~-ddfIG~v~IpL~-eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f 482 (1148)
|.|+|||+|.++ |++||.+.|+|. .+..|...+.||+|...+|++ ..|.|+|+|+|
T Consensus 64 l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~--~~g~i~l~l~y 121 (121)
T cd04016 64 IYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGED--KEGMINLVFSY 121 (121)
T ss_pred EEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCccCCC--CceEEEEEEeC
Confidence 999999999865 789999999996 688888889999998877764 44799999987
No 22
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.85 E-value=2.5e-21 Score=227.29 Aligned_cols=176 Identities=23% Similarity=0.376 Sum_probs=146.7
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeece---------------
Q 001130 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG--------------- 347 (1148)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~G--------------- 347 (1148)
+.+.+|.-||++++| .| |+|.|+|||||+|++||+ +|+||||+ |++.++|.|-+|
T Consensus 972 q~~~~lL~ynr~qlSRVY---PkGqRldSsNy~P~pmWn----~GsqmVALN~QTgDKpMQmNqa~F~~ngrcGYvLqPs 1044 (1267)
T KOG1264|consen 972 QKPVDLLKYNRKQLSRVY---PKGQRLDSSNYDPFPMWN----CGSQMVALNFQTGDKPMQMNQALFSLNGRCGYVLQPS 1044 (1267)
T ss_pred hccccccccccccceeec---CCCcccccCCCCCccccc----ccceeEEeeccCCCchhhhhHHHhhcCCceeeEecch
Confidence 678899999999999 99 999999999999999999 99999999 999998876555
Q ss_pred ---------------------EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC-----EEEEeeee
Q 001130 348 ---------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-----AVVGRTFV 401 (1148)
Q Consensus 348 ---------------------tL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g-----~~~~RTkv 401 (1148)
+|.|.|+.|+.|+.. |+ ...-|+|.|.|-| .+.++|.|
T Consensus 1045 ~Mrte~fdP~n~e~~~~l~p~~lsv~vigaRHL~k~---gr-------------~i~cPfVevEiiGa~~Dt~~~~t~~V 1108 (1267)
T KOG1264|consen 1045 SMRTEKFDPMNPESQRGLLPMTLSVKVLGARHLPKL---GR-------------SIACPFVEVEIIGAEYDTNKFKTTVV 1108 (1267)
T ss_pred hcccccCCCCChHHhccccceEEEEEEeeccccccC---CC-------------CccCCcEEEEEeccccCCCceEEEEe
Confidence 689999999999843 21 1257999999966 45557778
Q ss_pred eeCCCCCeec-eEEEEEecCCC-ceEEEEEEEccCCCC-cceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEE
Q 001130 402 ISNSEDPVWQ-QHFYVPVAHSA-AEVHFFVKDSDVVGS-ELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTL 478 (1148)
Q Consensus 402 i~nt~NPvWN-E~F~f~v~~~~-~~L~~~V~D~D~~~d-dfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L 478 (1148)
+.|++||+|| |+|+|.+..+. +.|+|.|+|.|++++ .|||+++.||..|+.|. +.+||.+.-.+-+ ..++|.|
T Consensus 1109 ~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySEdl-ELaSLLv 1184 (1267)
T KOG1264|consen 1109 NDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGF---RSVPLKNGYSEDL-ELASLLV 1184 (1267)
T ss_pred ccCCCCCCCCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhhccc---eeeecccCchhhh-hhhhhee
Confidence 8889999999 99999999887 999999999999775 59999999999999996 4589966544433 2346777
Q ss_pred EEEEeccccc
Q 001130 479 SIQYTPMERL 488 (1148)
Q Consensus 479 ~l~f~p~~~~ 488 (1148)
.++..|+.+.
T Consensus 1185 ~i~m~~~~~~ 1194 (1267)
T KOG1264|consen 1185 FIEMRPVLES 1194 (1267)
T ss_pred eeEeccccCc
Confidence 7776666553
No 23
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.82 E-value=9.1e-20 Score=181.12 Aligned_cols=114 Identities=24% Similarity=0.308 Sum_probs=103.9
Q ss_pred EEEEEEEeeC---CCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCCceE
Q 001130 349 LDIWIYSAKN---LPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEV 425 (1148)
Q Consensus 349 L~VtV~eAk~---L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~~~L 425 (1148)
|+|+|++|+| |+.+|..|+ +||||+|.+++++. ||++++++.||+|||+|.|.+.+....|
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~---------------sDPYv~i~~g~~~~-rTk~~~~~~nP~WnE~f~f~v~~~~~~l 65 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGS---------------TDAYCVAKYGPKWV-RTRTVEDSSNPRWNEQYTWPVYDPCTVL 65 (126)
T ss_pred eEEEEEEeECCccccccccCCC---------------CCeeEEEEECCEEe-EcCcccCCCCCcceeEEEEEecCCCCEE
Confidence 8999999999 788888776 99999999998876 9999999999999999999998888899
Q ss_pred EEEEEEccCC-------CCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEE
Q 001130 426 HFFVKDSDVV-------GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTL 478 (1148)
Q Consensus 426 ~~~V~D~D~~-------~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L 478 (1148)
.|+|||+|.. +|++||++.|+|+++..+...+.||+|.+.++++.+..|+|++
T Consensus 66 ~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 66 TVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred EEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 9999999986 7999999999999999998889999999887776777788875
No 24
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.81 E-value=2.7e-19 Score=181.60 Aligned_cols=124 Identities=25% Similarity=0.397 Sum_probs=110.4
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCCceE
Q 001130 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEV 425 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~~~L 425 (1148)
...|.|.|+||++|+.+ .||||+|.+++++++||+++.++.||.|||+|.|.+.+....|
T Consensus 10 ~~sL~v~V~EAk~Lp~~--------------------~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l 69 (146)
T cd04013 10 ENSLKLWIIEAKGLPPK--------------------KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVI 69 (146)
T ss_pred EEEEEEEEEEccCCCCc--------------------CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEE
Confidence 35799999999999853 4899999999999999999999999999999999998888899
Q ss_pred EEEEEEcc-CC----CCcceeeEEEeceeeccCCcccceeeeccCCCCC-------CCCCCcEEEEEEEecccccc
Q 001130 426 HFFVKDSD-VV----GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKP-------CKPGATLTLSIQYTPMERLS 489 (1148)
Q Consensus 426 ~~~V~D~D-~~----~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~-------~~~~g~L~L~l~f~p~~~~~ 489 (1148)
.|.|++.+ .. ++++||.+.||+++|..|...++||+|.+.++++ ++.+++|||+++|.++...+
T Consensus 70 ~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~~lP 145 (146)
T cd04013 70 TVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTRVLP 145 (146)
T ss_pred EEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEeeeCC
Confidence 99996543 33 5789999999999999999999999999998887 66778999999999987654
No 25
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.81 E-value=4.1e-19 Score=174.66 Aligned_cols=119 Identities=23% Similarity=0.363 Sum_probs=107.4
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCCceEEEE
Q 001130 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFF 428 (1148)
Q Consensus 349 L~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~~~L~~~ 428 (1148)
|+|+|++|++|+.+|..+. +||||+|.+++....||+++.++.||+|||+|.|.+......|.|+
T Consensus 2 L~v~v~~a~~L~~~d~~g~---------------~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~ 66 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGT---------------SDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIK 66 (121)
T ss_pred eEEEEEEeeCCCCcCCCCC---------------CCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEE
Confidence 8999999999998887765 8999999999877789999999999999999999998777899999
Q ss_pred EEEccCC-CCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEEEec
Q 001130 429 VKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1148)
Q Consensus 429 V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~p 484 (1148)
|||+|.. ++++||++.+++.+|..+...+.|++|.+.++. +..|+|+|.++|.|
T Consensus 67 v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~--~~~G~l~l~~~~~~ 121 (121)
T cd04042 67 VFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSD--EDLGYISLVVTLTP 121 (121)
T ss_pred EEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCCc--cCceEEEEEEEECC
Confidence 9999986 789999999999999988888999999876653 35689999999976
No 26
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.80 E-value=3.9e-19 Score=176.17 Aligned_cols=117 Identities=21% Similarity=0.374 Sum_probs=101.3
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecC------CC
Q 001130 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAH------SA 422 (1148)
Q Consensus 349 L~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~------~~ 422 (1148)
|+|+|++|+||+.+|..|. +||||+|.+++.+. ||++++++.||+|||+|.|.+.. ..
T Consensus 1 ~~V~V~~A~~L~~~d~~g~---------------~dpYv~v~l~~~~~-kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~ 64 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGT---------------NDAYVIIQLGKEKY-STSVKEKTTSPVWKEECSFELPGLLSGNGNR 64 (126)
T ss_pred CEEEEEECcCCcCCCCCcC---------------CCceEEEEECCeee-eeeeecCCCCCEeCceEEEEecCcccCCCcC
Confidence 5799999999998887665 89999999988775 99999999999999999999876 35
Q ss_pred ceEEEEEEEccCCC-CcceeeEEEeceeec--cCCcccceeeeccCCCCCCCCCCcEEEEEE
Q 001130 423 AEVHFFVKDSDVVG-SELIGTVAIPVEQIY--SGGKVEGTYPVLNGSGKPCKPGATLTLSIQ 481 (1148)
Q Consensus 423 ~~L~~~V~D~D~~~-ddfIG~v~IpL~eL~--~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~ 481 (1148)
..|.|+|||++..+ +++||++.|+++++. .+...+.||+|.+..++..+..|+|+|+|+
T Consensus 65 ~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 65 ATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred CEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 78999999999854 899999999999988 566778999998766655556689998874
No 27
>PRK05443 polyphosphate kinase; Provisional
Probab=99.79 E-value=6.7e-18 Score=207.76 Aligned_cols=272 Identities=16% Similarity=0.162 Sum_probs=188.4
Q ss_pred hhHHHHHHHHHHHHhcc-----ceEEEEeeccceeeEEeCCCCchHHHHHHHHHHhhhcCCcEEEEEecCCCcccccccc
Q 001130 543 HGKCWYDICNAISQAQR-----LIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYK 617 (1148)
Q Consensus 543 ~~~~f~al~eAI~~Ar~-----sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILVwD~~~s~~~~g~k 617 (1148)
|=+.|.-+++.|++|.+ +|.|+-|.+. ....|.++|++||++||+|+||| +... . +
T Consensus 346 PY~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~------------~~s~iv~aL~~Aa~~Gk~V~vlv-e~ka-r--f--- 406 (691)
T PRK05443 346 PYESFDPVVEFLRQAAADPDVLAIKQTLYRTS------------KDSPIVDALIEAAENGKQVTVLV-ELKA-R--F--- 406 (691)
T ss_pred CccCchHHHHHHHHhccCCCeeEEEEEEEEec------------CCHHHHHHHHHHHHcCCEEEEEE-ccCc-c--c---
Confidence 33689999999999998 8999988542 23789999999999999999998 4321 0 0
Q ss_pred cccccccccHHHHHHhhcCCcEEEEccCcccccccccccccccccccccceEEEEcCCCCCCCccEEEEECCccCCCCCC
Q 001130 618 MDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRY 697 (1148)
Q Consensus 618 ~~g~m~t~~~et~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRw 697 (1148)
....+..+.+.|+.+||+|+.-.. .+..|.|+++||++.++ +-+..|+||+.|+....
T Consensus 407 ----de~~n~~~~~~L~~aGv~V~y~~~----------------~~k~HaK~~lid~~e~~-~~~~~~~iGTgN~n~~s- 464 (691)
T PRK05443 407 ----DEEANIRWARRLEEAGVHVVYGVV----------------GLKTHAKLALVVRREGG-GLRRYVHLGTGNYNPKT- 464 (691)
T ss_pred ----cHHHHHHHHHHHHHcCCEEEEccC----------------CccceeEEEEEEeecCC-ceeEEEEEcCCCCCcch-
Confidence 001123456678889999965321 23589999999996433 34458999999998742
Q ss_pred CCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEE-cCHHHHHHHHHHHHHHHhhcCCCCccccCCchhhhh
Q 001130 698 DNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKI-DGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALL 776 (1148)
Q Consensus 698 Dt~~H~l~d~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI-~GPaa~Dl~~~F~qrWn~~t~~~~~~~l~~~~~~l~ 776 (1148)
...|.|+.+.+ ++..+.|+...|...|....... +
T Consensus 465 --------------------------------~~~y~D~~l~t~d~~i~~d~~~~F~~l~~~~~~~~-------~----- 500 (691)
T PRK05443 465 --------------------------------ARLYTDLSLLTADPEIGEDVTRLFNYLTGYSRPVK-------L----- 500 (691)
T ss_pred --------------------------------hhhccceeEEEeChHHHHHHHHHHHHHhCcCcccc-------c-----
Confidence 13578999985 55689999999998876421100 0
Q ss_pred hhccCCCccCCCCCCCcccCCCCCceEEEEeecCCcccccCCCChhhhcccccccCcccchhhHHHHHHHHHHHhhcc--
Q 001130 777 RIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQH-- 854 (1148)
Q Consensus 777 ~~~~~p~~~~~~~~p~~~~~~~~~~~vQvlRS~~~~s~~~~P~~P~~~~~~~l~~g~~~~~e~sI~~Ayl~aI~~Ak~-- 854 (1148)
-.++-+ |.. ....|.+.+..+|.+||+
T Consensus 501 --------------------------~~l~~s---------P~~----------------~~~~l~~~i~~ei~~Ak~G~ 529 (691)
T PRK05443 501 --------------------------RKLLVS---------PFT----------------LRERLLELIDREIANARAGK 529 (691)
T ss_pred --------------------------cEEeec---------Ccc----------------HHHHHHHHHHHHHHHHhcCC
Confidence 000000 111 234688899999999999
Q ss_pred --EEEEEEeEeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEe-------cCCCCCCCCCcchhHHHHH
Q 001130 855 --FIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVI-------PMWPEGVPTGAATQRILFW 925 (1148)
Q Consensus 855 --fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVl-------P~~Peg~p~~~s~~~il~~ 925 (1148)
+|+|.+.||. +. .+..+|..| +.+||+|.|++ |..|+ .+++..+
T Consensus 530 ~a~I~ik~n~l~-d~-----------------~ii~aL~~A--s~~GV~V~liVRGiC~l~pgipg-----~sd~i~v-- 582 (691)
T PRK05443 530 PARIIAKMNSLV-DP-----------------QIIDALYEA--SQAGVKIDLIVRGICCLRPGVPG-----LSENIRV-- 582 (691)
T ss_pred CCEEEEEcCCCC-CH-----------------HHHHHHHHH--HHCCCeEEEEEecccccCCCCCC-----CCCCEEE--
Confidence 9999999954 32 466666665 47899999999 22221 1122111
Q ss_pred HHHhHhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCCcceeeeeEEEEE
Q 001130 926 QHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIV 1005 (1148)
Q Consensus 926 ~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~L~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~IYVHSKlmIV 1005 (1148)
.+++.+++++ +++++ | -..
T Consensus 583 ---------~s~v~r~Leh-~rIy~----f------------------------------------------~~g----- 601 (691)
T PRK05443 583 ---------RSIVGRFLEH-SRIYY----F------------------------------------------GNG----- 601 (691)
T ss_pred ---------HHHHHHHHhc-CEEEE----E------------------------------------------eCC-----
Confidence 2466667663 45442 0 000
Q ss_pred eCeEEEEcccccccccCCCCCCcceEEEEeCcchh
Q 001130 1006 DDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1040 (1148)
Q Consensus 1006 DD~~viIGSANLN~RSm~G~~DsEiav~i~dp~~~ 1040 (1148)
||++++||||||+.|||. ++.|+++.|+|+...
T Consensus 602 d~~~~~iGSAn~d~Rsl~--~r~Ev~~~i~d~~~~ 634 (691)
T PRK05443 602 GDEEVYISSADWMPRNLD--RRVEVLFPILDPRLK 634 (691)
T ss_pred CCcEEEEECCCCCccccc--ceEEEeEEEeCHHHH
Confidence 889999999999999998 999999999998753
No 28
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.77 E-value=4.7e-18 Score=173.97 Aligned_cols=123 Identities=18% Similarity=0.226 Sum_probs=105.5
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeC-CCCCeeceEEEEEecCCC-ceEE
Q 001130 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISN-SEDPVWQQHFYVPVAHSA-AEVH 426 (1148)
Q Consensus 349 L~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~n-t~NPvWNE~F~f~v~~~~-~~L~ 426 (1148)
|+|+|++|++|+.+|.+|+ +||||+|.++++.. ||+++.+ +.||+|||+|.|.+.++. +.|.
T Consensus 2 L~V~Vi~A~~L~~~d~~g~---------------sDPYV~v~l~~~~~-kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~ 65 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRV---------------PEVFVKAQLGNQVL-RTRPSQTRNGNPSWNEELMFVAAEPFEDHLI 65 (150)
T ss_pred EEEEEEEeECCCCCCCCCC---------------CCeEEEEEECCEEe-eeEeccCCCCCCcccCcEEEEecCccCCeEE
Confidence 8999999999999988776 89999999999765 9999977 699999999999997654 6899
Q ss_pred EEEEEccCC-CCcceeeEEEeceeeccC----CcccceeeeccCCC-----CCCCCCCcEEEEEEEecccc
Q 001130 427 FFVKDSDVV-GSELIGTVAIPVEQIYSG----GKVEGTYPVLNGSG-----KPCKPGATLTLSIQYTPMER 487 (1148)
Q Consensus 427 ~~V~D~D~~-~ddfIG~v~IpL~eL~~G----~~~d~W~pL~~~~G-----k~~~~~g~L~L~l~f~p~~~ 487 (1148)
|+|+|++.. ++++||++.|+|.+|..+ ...+.||+|.+..| ++.+..|+|+|+++|.....
T Consensus 66 v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~ 136 (150)
T cd04019 66 LSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYH 136 (150)
T ss_pred EEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcce
Confidence 999999874 689999999999999754 45689999987765 55567789999999985443
No 29
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.76 E-value=1e-17 Score=166.47 Aligned_cols=119 Identities=19% Similarity=0.337 Sum_probs=100.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCC-ceE
Q 001130 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA-AEV 425 (1148)
Q Consensus 347 GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~-~~L 425 (1148)
..|+|+|++|++|+..+ . +||||+|.+++...+||+++ ++.||+|||+|.|.+.... ..|
T Consensus 4 ~~L~V~Vi~A~~L~~~~---~---------------~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l 64 (126)
T cd08400 4 RSLQLNVLEAHKLPVKH---V---------------PHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSF 64 (126)
T ss_pred eEEEEEEEEeeCCCCCC---C---------------CCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEE
Confidence 46999999999998532 2 89999999998777899985 6899999999999975543 678
Q ss_pred EEEEEEccC-CCCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEEEec
Q 001130 426 HFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1148)
Q Consensus 426 ~~~V~D~D~-~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~p 484 (1148)
+|.|+|++. .++++||++.|||.++..|...+.||+|...++++.+..|+|+|+|+|.+
T Consensus 65 ~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 65 TISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred EEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 999999987 46899999999999999988889999998765433456689999999976
No 30
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.76 E-value=3.6e-18 Score=166.87 Aligned_cols=116 Identities=22% Similarity=0.432 Sum_probs=100.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeC-CCCCeeceEEEEEecCC-Cce
Q 001130 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISN-SEDPVWQQHFYVPVAHS-AAE 424 (1148)
Q Consensus 347 GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~n-t~NPvWNE~F~f~v~~~-~~~ 424 (1148)
|+|+|+|++|++|++.|..++ +||||+|.+++.. +||+++.+ +.||+|||+|.|.+... .+.
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~---------------~dpyv~v~~~~~~-~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~ 64 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDK---------------QDPYCVLRIGGVT-KKTKTDFRGGQHPEWDEELRFEITEDKKPI 64 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCC---------------CCceEEEEECCCc-cccccccCCCCCCccCceEEEEecCCCCCE
Confidence 789999999999998887776 8999999999865 59998765 79999999999999764 478
Q ss_pred EEEEEEEccCCCCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEEE
Q 001130 425 VHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1148)
Q Consensus 425 L~~~V~D~D~~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f 482 (1148)
|.|+|||++..++++||++.+++.++..+...+.|++|.. +|+ ..|+|+|+|+|
T Consensus 65 l~i~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~-~~~---~~G~i~l~l~f 118 (118)
T cd08681 65 LKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELTL-KGR---YAGEVYLELTF 118 (118)
T ss_pred EEEEEEeCCCCCCcceEEEEEecHHHhhcCCCCCcEEecc-CCc---EeeEEEEEEEC
Confidence 9999999998779999999999999987777789999964 443 34799999987
No 31
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.75 E-value=1.1e-17 Score=165.26 Aligned_cols=118 Identities=25% Similarity=0.342 Sum_probs=100.4
Q ss_pred EEEEEEEeeCCCCCCC-CCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCCceEEE
Q 001130 349 LDIWIYSAKNLPNMDM-FHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 427 (1148)
Q Consensus 349 L~VtV~eAk~L~~~D~-~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~~~L~~ 427 (1148)
|+|+|++|+||+.++. .+. +||||+|.++++..+||+++++|.||+|||+|.|.+.+....|.|
T Consensus 2 l~v~v~~a~~L~~~~~~~g~---------------sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~ 66 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKM---------------RDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSF 66 (121)
T ss_pred eEEEEEEccCCCCCCCCCCC---------------cCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEE
Confidence 7899999999998753 233 899999999887778999999999999999999999876689999
Q ss_pred EEEEccCC-CCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEEE
Q 001130 428 FVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1148)
Q Consensus 428 ~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f 482 (1148)
.|||++.. ++++||++.++++++..+...+.||+|.... ...+..|+|+|+++|
T Consensus 67 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~-~~~~~~G~i~l~~~~ 121 (121)
T cd08401 67 YIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQPVD-ADSEVQGKVHLELRL 121 (121)
T ss_pred EEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEEEEccC-CCCcccEEEEEEEEC
Confidence 99999985 6899999999999999887789999996432 212346899999875
No 32
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=99.75 E-value=4.4e-17 Score=199.50 Aligned_cols=270 Identities=17% Similarity=0.190 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHhcc-----ceEEEEeeccceeeEEeCCCCchHHHHHHHHHHhhhcCCcEEEEEecCCCcccccccccc
Q 001130 545 KCWYDICNAISQAQR-----LIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMD 619 (1148)
Q Consensus 545 ~~f~al~eAI~~Ar~-----sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILVwD~~~s~~~~g~k~~ 619 (1148)
+.|+.+++.|++|.+ +|.|+-|.+. ...+|.++|.+||++||+|+||| +-... . +
T Consensus 339 ~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~~------------~~s~ii~aL~~Aa~~Gk~V~v~v-eLkAr---f----d 398 (672)
T TIGR03705 339 ESFDPVVEFLRQAAEDPDVLAIKQTLYRTS------------KDSPIIDALIEAAENGKEVTVVV-ELKAR---F----D 398 (672)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEEEEec------------CCcHHHHHHHHHHHcCCEEEEEE-Eehhh---c----c
Confidence 678999999999998 8999988542 13689999999999999999998 41110 0 0
Q ss_pred cccccccHHHHHHhhcCCcEEEEccCcccccccccccccccccccccceEEEEcCCCCCCCccEEEEECCccCCCCCCCC
Q 001130 620 GVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDN 699 (1148)
Q Consensus 620 g~m~t~~~et~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt 699 (1148)
. ..+.++.+.|+.+|++|+.-- ..+..|.|+++||.+.++ +-+..+++|.-|.+..
T Consensus 399 e---~~ni~wa~~le~aG~~viyg~----------------~~~k~H~K~~li~r~~~~-~~~~y~~igTgN~n~~---- 454 (672)
T TIGR03705 399 E---EANIRWARRLEEAGVHVVYGV----------------VGLKTHAKLALVVRREGG-ELRRYVHLGTGNYHPK---- 454 (672)
T ss_pred c---hhhHHHHHHHHHcCCEEEEcC----------------CCeeeeeEEEEEEEeeCC-ceEEEEEecCCCCCCc----
Confidence 0 112356677889999997621 125789999999985322 2234677777666553
Q ss_pred CCCCcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeE-EcCHHHHHHHHHHHHHHHhhcCCCCccccCCchhhhhhh
Q 001130 700 PHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSK-IDGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRI 778 (1148)
Q Consensus 700 ~~H~l~d~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vr-I~GPaa~Dl~~~F~qrWn~~t~~~~~~~l~~~~~~l~~~ 778 (1148)
-...|+|+++. .++..+.|+...|...|....... +.. ++
T Consensus 455 -----------------------------ta~~y~D~~l~t~~~~i~~d~~~~F~~l~~~~~~~~-------~~~-l~-- 495 (672)
T TIGR03705 455 -----------------------------TARLYTDLSLFTADPEIGRDVARVFNYLTGYSRPPK-------FKH-LL-- 495 (672)
T ss_pred -----------------------------ccccccceeEEEeChHHHHHHHHHHHHhhCCCcchh-------hHH-HH--
Confidence 12468999998 888999999999998876321100 000 00
Q ss_pred ccCCCccCCCCCCCcccCCCCCceEEEEeecCCcccccCCCChhhhcccccccCcccchhhHHHHHHHHHHHhhcc----
Q 001130 779 ERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQH---- 854 (1148)
Q Consensus 779 ~~~p~~~~~~~~p~~~~~~~~~~~vQvlRS~~~~s~~~~P~~P~~~~~~~l~~g~~~~~e~sI~~Ayl~aI~~Ak~---- 854 (1148)
+ -|.. ....+.+.+.+.|.+||+
T Consensus 496 -----------------------------~--------~P~~----------------~~~~~~~~i~~ei~~Ak~g~~~ 522 (672)
T TIGR03705 496 -----------------------------V--------SPFT----------------LRKRLLELIDREIENARAGKPA 522 (672)
T ss_pred -----------------------------h--------Ccch----------------HHHHHHHHHHHHHHHHHcCCCC
Confidence 0 0111 234688889999999999
Q ss_pred EEEEEEeEeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecC---CCCCCCCCcchhHHHHHHHHhHh
Q 001130 855 FIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPM---WPEGVPTGAATQRILFWQHKTMQ 931 (1148)
Q Consensus 855 fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~---~Peg~p~~~s~~~il~~~~rTm~ 931 (1148)
+|+|.++||. +. .+..+|..| +.+||+|.+++-+ +.-|.|+ .+++..+
T Consensus 523 ~I~ik~n~l~-D~-----------------~ii~aL~~A--s~aGV~V~LivRGiCcL~pgipg-~sd~i~v-------- 573 (672)
T TIGR03705 523 RIIAKMNSLV-DP-----------------DLIDALYEA--SQAGVKIDLIVRGICCLRPGVPG-LSENIRV-------- 573 (672)
T ss_pred EEEEEcCCCC-CH-----------------HHHHHHHHH--HHCCCeEEEEEecccccCCCCCC-CCCCEEE--------
Confidence 9999999955 32 466666665 4789999999911 0001111 1111111
Q ss_pred hHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCCcceeeeeEEEEE---eCe
Q 001130 932 MMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIV---DDE 1008 (1148)
Q Consensus 932 ~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~L~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~IYVHSKlmIV---DD~ 1008 (1148)
.+++.++++ |+|+++. ||+
T Consensus 574 ---~siv~r~Le-------------------------------------------------------h~rIy~f~~~~d~ 595 (672)
T TIGR03705 574 ---RSIVGRFLE-------------------------------------------------------HSRIYYFGNGGEE 595 (672)
T ss_pred ---EEEhhHhhC-------------------------------------------------------cCEEEEEeCCCCc
Confidence 123444444 4444443 688
Q ss_pred EEEEcccccccccCCCCCCcceEEEEeCcch
Q 001130 1009 YVILGSANINQRSMEGTRDTEIAMGAYQPEY 1039 (1148)
Q Consensus 1009 ~viIGSANLN~RSm~G~~DsEiav~i~dp~~ 1039 (1148)
++.||||||+.|||. ++-|+++.|+|+..
T Consensus 596 ~~~igSAn~m~Rnl~--~r~E~~~~i~d~~~ 624 (672)
T TIGR03705 596 KVYISSADWMTRNLD--RRVEVLFPIEDPTL 624 (672)
T ss_pred EEEEECCCCCCCccc--ceEEEEEEEcCHHH
Confidence 999999999999998 99999999999874
No 33
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.74 E-value=1.1e-17 Score=165.90 Aligned_cols=120 Identities=20% Similarity=0.295 Sum_probs=101.8
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCC----c
Q 001130 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA----A 423 (1148)
Q Consensus 348 tL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~----~ 423 (1148)
+|.|+|++|++|+..|..+. +||||+|.+++++. ||++++++.||+|||+|.|.+.++. .
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~---------------~dpyv~v~~~~~~~-rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~ 64 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGS---------------SSAYVELDFDGQKK-RTRTKPKDLNPVWNEKLVFNVSDPSRLSNL 64 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCC---------------cCcEEEEEECCEEe-cceeEcCCCCCccceEEEEEccCHHHccCC
Confidence 38999999999998887665 89999999999875 9999999999999999999987543 5
Q ss_pred eEEEEEEEccCC--CCcceeeEEEeceeec-cCCcccceeeeccCCCCCCCCCCcEEEEEEEec
Q 001130 424 EVHFFVKDSDVV--GSELIGTVAIPVEQIY-SGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1148)
Q Consensus 424 ~L~~~V~D~D~~--~ddfIG~v~IpL~eL~-~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~p 484 (1148)
.|.|+|||++.. +++|||++.|++++|. .+.....||+|..+ ++..+..|+|+|+++|+.
T Consensus 65 ~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~-~~~~~~~G~l~l~~~~~~ 127 (127)
T cd04022 65 VLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKR-GLFSRVRGEIGLKVYITD 127 (127)
T ss_pred eEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeC-CCCCCccEEEEEEEEEcC
Confidence 799999999875 6899999999999998 56677899999754 322234689999999863
No 34
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.73 E-value=5.1e-17 Score=162.36 Aligned_cols=126 Identities=21% Similarity=0.379 Sum_probs=102.1
Q ss_pred eeceEEEEEEEEeeCCCCCCCCCcc-ccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCC
Q 001130 344 LLHGNLDIWIYSAKNLPNMDMFHKT-LGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA 422 (1148)
Q Consensus 344 Ll~GtL~VtV~eAk~L~~~D~~g~~-~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~ 422 (1148)
||.|+|+|+|++|++|...|..+.. +.+. ....+||||+|.+++++++||++++++.||+|||+|.|.+. ..
T Consensus 1 ~~~g~l~V~v~~a~~L~~~d~~~~~~~~~~------~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~ 73 (132)
T cd04014 1 MFTGTLKIKICEAVDLKPTDWSTRHAVPKK------GSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NG 73 (132)
T ss_pred CcceEEEEEEEEecCCCCCCchhhhccccc------CccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CC
Confidence 4789999999999999988763210 0000 01138999999999988889999999999999999999997 45
Q ss_pred ceEEEEEEEccCC-CCcceeeEEEeceeecc--CCcccceeeeccCCCCCCCCCCcEEEEEEEec
Q 001130 423 AEVHFFVKDSDVV-GSELIGTVAIPVEQIYS--GGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1148)
Q Consensus 423 ~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~--G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~p 484 (1148)
+.|.|.|+|++.. .+++||++.++|+++.. +...+.|++|. +.|+|+|+++|..
T Consensus 74 ~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 74 RNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred CEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 7899999998874 57899999999999997 56678999994 2368999998764
No 35
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.72 E-value=3e-17 Score=162.03 Aligned_cols=113 Identities=21% Similarity=0.374 Sum_probs=97.7
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCC-CceEEE
Q 001130 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHF 427 (1148)
Q Consensus 349 L~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~-~~~L~~ 427 (1148)
|.|+|++|++|+.+ . +||||+|.+.+.. +||++++++.||+|||+|.|.+.+. ...|.|
T Consensus 2 L~V~Vi~a~~L~~~----~---------------~Dpyv~v~l~~~~-~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~ 61 (121)
T cd08378 2 LYVRVVKARGLPAN----S---------------NDPVVEVKLGNYK-GSTKAIERTSNPEWNQVFAFSKDRLQGSTLEV 61 (121)
T ss_pred EEEEEEEecCCCcc----c---------------CCCEEEEEECCcc-ccccccCCCCCCccceEEEEEcCCCcCCEEEE
Confidence 89999999999865 3 8999999998865 5999999999999999999998774 578999
Q ss_pred EEEEccCCCCcceeeEEEeceeeccCC-----cccceeeeccCCCCCCCCCCcEEEEEEEe
Q 001130 428 FVKDSDVVGSELIGTVAIPVEQIYSGG-----KVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1148)
Q Consensus 428 ~V~D~D~~~ddfIG~v~IpL~eL~~G~-----~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~ 483 (1148)
+|||+|..++++||++.++++++..+. ..+.||+|.+..+. +..|+|+|+++|-
T Consensus 62 ~v~d~d~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~--~~~G~i~l~~~~~ 120 (121)
T cd08378 62 SVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGG--RVGGELMLAVWFG 120 (121)
T ss_pred EEEeCCCCcCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCC--ccceEEEEEEEec
Confidence 999999888999999999999987532 35689999877653 3458999999984
No 36
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.72 E-value=5.7e-17 Score=160.81 Aligned_cols=122 Identities=16% Similarity=0.307 Sum_probs=102.4
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC-EEEEeeeeeeCCCCCeeceEEEEEecCCCceEEE
Q 001130 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-AVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 427 (1148)
Q Consensus 349 L~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g-~~~~RTkvi~nt~NPvWNE~F~f~v~~~~~~L~~ 427 (1148)
|.|+|++|+||+. ..+. +||||+|.+++ ....||++++++.||+|||+|.|.+......|.|
T Consensus 1 l~v~v~~A~~L~~--~~g~---------------~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~ 63 (126)
T cd08678 1 LLVKNIKANGLSE--AAGS---------------SNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLF 63 (126)
T ss_pred CEEEEEEecCCCC--CCCC---------------cCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEE
Confidence 6799999999986 4444 89999999975 2335999999999999999999999765678999
Q ss_pred EEEEccCC-CCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEEEecccc
Q 001130 428 FVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMER 487 (1148)
Q Consensus 428 ~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~p~~~ 487 (1148)
+|||++.. .+++||++.+++.+|..+...+.|++|....++..+..|+|+|.++|.+..+
T Consensus 64 ~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~~ 124 (126)
T cd08678 64 EVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPAE 124 (126)
T ss_pred EEEECCCCCCCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecccc
Confidence 99999985 5899999999999999887778999997654433345689999999987653
No 37
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.72 E-value=6.7e-17 Score=157.90 Aligned_cols=118 Identities=25% Similarity=0.418 Sum_probs=102.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCCceEE
Q 001130 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVH 426 (1148)
Q Consensus 347 GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~~~L~ 426 (1148)
|+|+|+|++|++|+.++..+. +||||+|.+.+... ||++++++.||.|||+|.|.+.+....|.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~---------------~dPyv~v~~~~~~~-~T~~~~~t~nP~W~e~f~~~~~~~~~~l~ 64 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGK---------------SDPFCVLELVNARL-QTHTIYKTLNPEWNKIFTFPIKDIHDVLE 64 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCC---------------CCcEEEEEECCEee-ecceecCCcCCccCcEEEEEecCcCCEEE
Confidence 789999999999998887765 89999999988774 99999999999999999999987678999
Q ss_pred EEEEEccC-CCCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEEEe
Q 001130 427 FFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1148)
Q Consensus 427 ~~V~D~D~-~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~ 483 (1148)
|+|||++. .++++||++.+++.++..+. ..|++|.+..++. +..|+|.|+|+|.
T Consensus 65 ~~v~d~~~~~~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~-~~~G~i~l~~~~~ 119 (119)
T cd08377 65 VTVYDEDKDKKPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRT-RAKGSILLEMDVI 119 (119)
T ss_pred EEEEECCCCCCCceeeEEEEEHHHCCCCC--ceEEECcccCCCC-ceeeEEEEEEEeC
Confidence 99999988 56899999999999998664 5899998665443 2457999999873
No 38
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.71 E-value=6.3e-17 Score=158.28 Aligned_cols=120 Identities=23% Similarity=0.378 Sum_probs=98.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCC-CceE
Q 001130 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEV 425 (1148)
Q Consensus 347 GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~-~~~L 425 (1148)
|+|+|+|++|++|+.+|..... .....+||||+|.+++.. +||++++++.||+|||+|.|.+... ...|
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~---------~~~g~~dPyv~v~~~~~~-~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l 70 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGG---------LVKGKSDPYVIVRVGAQT-FKSKVIKENLNPKWNEVYEAVVDEVPGQEL 70 (121)
T ss_pred CeEEEEEEEccCCccccccccc---------CCCCCcCCEEEEEECCEe-EEccccCCCCCCcccceEEEEeCCCCCCEE
Confidence 6899999999999987753100 000128999999999855 6999999999999999999998754 5789
Q ss_pred EEEEEEccCCCCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEEE
Q 001130 426 HFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1148)
Q Consensus 426 ~~~V~D~D~~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f 482 (1148)
.|+|+|++..++++||++.+++.++..+...+.||+|.+. ..|+|+|+++|
T Consensus 71 ~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~~ 121 (121)
T cd08391 71 EIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLEW 121 (121)
T ss_pred EEEEEecCCCCCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEeC
Confidence 9999999988899999999999999987778899999643 23688888875
No 39
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.71 E-value=8.8e-17 Score=158.92 Aligned_cols=120 Identities=23% Similarity=0.424 Sum_probs=100.5
Q ss_pred eEEEEEEEEeeCCCCCCC--CCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCC-Cc
Q 001130 347 GNLDIWIYSAKNLPNMDM--FHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AA 423 (1148)
Q Consensus 347 GtL~VtV~eAk~L~~~D~--~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~-~~ 423 (1148)
|+|+|+|++|++|+..|. .+. +||||+|.+++.. .||++++++.||+|||+|.|++... ..
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~---------------~dPyv~v~~~~~~-~kT~~~~~t~~P~Wne~f~~~~~~~~~~ 64 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGK---------------SDPYAILSVGAQR-FKTQTIPNTLNPKWNYWCEFPIFSAQNQ 64 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCC---------------cCCeEEEEECCEE-EecceecCCcCCccCCcEEEEecCCCCC
Confidence 789999999999998887 554 8999999998776 4999999999999999999999873 58
Q ss_pred eEEEEEEEccCC-CCcceeeEEEeceeecc---CCcccceeeeccCC-CCCCCCCCcEEEEEEE
Q 001130 424 EVHFFVKDSDVV-GSELIGTVAIPVEQIYS---GGKVEGTYPVLNGS-GKPCKPGATLTLSIQY 482 (1148)
Q Consensus 424 ~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~---G~~~d~W~pL~~~~-Gk~~~~~g~L~L~l~f 482 (1148)
.|.|+|||++.. ++++||++.|++.++.. ....+.||+|.+.. ++.....|+|+|++.|
T Consensus 65 ~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 65 LLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred EEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 899999999985 68999999999999873 34467999997653 2223456899998864
No 40
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.71 E-value=7.5e-17 Score=158.19 Aligned_cols=113 Identities=27% Similarity=0.400 Sum_probs=96.6
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC--EEEEeeeeeeCCCCCeeceEEEEEecCC-CceE
Q 001130 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEV 425 (1148)
Q Consensus 349 L~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g--~~~~RTkvi~nt~NPvWNE~F~f~v~~~-~~~L 425 (1148)
|+|+|++|++|++.|..+. +||||+|.+.+ ...+||++++++.||+|||+|.|.+... ...|
T Consensus 2 L~V~vi~a~~L~~~~~~~~---------------~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l 66 (119)
T cd04036 2 LTVRVLRATNITKGDLLST---------------PDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVL 66 (119)
T ss_pred eEEEEEEeeCCCccCCCCC---------------CCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEE
Confidence 7899999999998887665 89999999964 3446999999999999999999998755 3679
Q ss_pred EEEEEEccCCCCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEEE
Q 001130 426 HFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1148)
Q Consensus 426 ~~~V~D~D~~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f 482 (1148)
.|+|||+|..++++||++.+++.+|..|...+.|++|.. .+ .|+|++.+.+
T Consensus 67 ~v~v~d~d~~~~~~iG~~~~~l~~l~~g~~~~~~~~L~~-~~-----~g~l~~~~~~ 117 (119)
T cd04036 67 ELTVMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSLNP-QG-----KEELEVEFLL 117 (119)
T ss_pred EEEEEECCCCCCcccEEEEEEHHHCCCCCcEEEEEECCC-CC-----CceEEEEEEe
Confidence 999999998889999999999999999988999999953 22 2577777664
No 41
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.70 E-value=9.9e-17 Score=157.54 Aligned_cols=121 Identities=28% Similarity=0.450 Sum_probs=100.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC-EEEEeeeeeeCCCCCeeceEEEEEecCCCceE
Q 001130 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-AVVGRTFVISNSEDPVWQQHFYVPVAHSAAEV 425 (1148)
Q Consensus 347 GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g-~~~~RTkvi~nt~NPvWNE~F~f~v~~~~~~L 425 (1148)
|+|+|+|++|++|+..+..++ .+||||+|.+.+ ...+||++++++.||+|||+|.|.+....+.|
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~--------------~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l 67 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGG--------------TVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPL 67 (124)
T ss_pred eEEEEEEEcccCCCcccccCC--------------CCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEE
Confidence 789999999999996654322 279999999998 46679999999999999999999998667899
Q ss_pred EEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEEEec
Q 001130 426 HFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1148)
Q Consensus 426 ~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~p 484 (1148)
.|+|||++.. ++++||++.+++.++..+...+.|...+..+|++ .|+|+++++|.|
T Consensus 68 ~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~---~G~i~~~l~~~p 124 (124)
T cd04044 68 NLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKP---VGELNYDLRFFP 124 (124)
T ss_pred EEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhhhcCCcc---ceEEEEEEEeCC
Confidence 9999999875 6899999999999999776655444433456664 379999999986
No 42
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.70 E-value=1.8e-16 Score=156.32 Aligned_cols=117 Identities=26% Similarity=0.440 Sum_probs=99.4
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCCceEEEE
Q 001130 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFF 428 (1148)
Q Consensus 349 L~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~~~L~~~ 428 (1148)
|.|+|++|++|+.+|..|+ +||||+|.+++..++||++++++.||+|||.|.|.+.+....|.|+
T Consensus 2 l~v~vi~a~~L~~~d~~g~---------------~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~ 66 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGS---------------SDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFY 66 (121)
T ss_pred EEEEEEEeeCCcCCCCCCC---------------CCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEE
Confidence 8999999999999988776 8999999999887789999999999999999999998777899999
Q ss_pred EEEccCC-CCcceeeEEEeceeeccC-CcccceeeeccCCCCCCCCCCcEEEEEE
Q 001130 429 VKDSDVV-GSELIGTVAIPVEQIYSG-GKVEGTYPVLNGSGKPCKPGATLTLSIQ 481 (1148)
Q Consensus 429 V~D~D~~-~ddfIG~v~IpL~eL~~G-~~~d~W~pL~~~~Gk~~~~~g~L~L~l~ 481 (1148)
|||++.. .+++||++.++++++..+ ...+.|++|...++.. +..|+|+|.++
T Consensus 67 v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~-~~~G~i~l~~~ 120 (121)
T cd04054 67 VLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDE-EVQGEIHLELS 120 (121)
T ss_pred EEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCC-ccccEEEEEEE
Confidence 9999985 589999999999988754 3478999996533221 23478888765
No 43
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.70 E-value=1.7e-16 Score=154.66 Aligned_cols=112 Identities=25% Similarity=0.340 Sum_probs=98.9
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCC-CceEEE
Q 001130 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHF 427 (1148)
Q Consensus 349 L~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~-~~~L~~ 427 (1148)
|+|+|++|++|+.+|..+. +||||+|.+++.. .||++++++.||+|||+|.|.+... ...|.|
T Consensus 2 ~~V~v~~a~~L~~~~~~~~---------------~dPyv~v~~~~~~-~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v 65 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGL---------------SDPYVKFRLGNEK-YKSKVCSKTLNPQWLEQFDLHLFDDQSQILEI 65 (116)
T ss_pred EEEEEEEEECCCCCCCCCC---------------CCcEEEEEECCEe-EecccccCCCCCceeEEEEEEecCCCCCEEEE
Confidence 7999999999998887665 8999999998876 4999999999999999999998776 588999
Q ss_pred EEEEccCC-CCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEEEe
Q 001130 428 FVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1148)
Q Consensus 428 ~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~ 483 (1148)
+|||++.. .+++||++.++++++..+...+.|++|.+. .|+|++.+.|+
T Consensus 66 ~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~-------~G~~~~~~~~~ 115 (116)
T cd08376 66 EVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDG-------EGSLLLLLTLT 115 (116)
T ss_pred EEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEccCC-------CcEEEEEEEec
Confidence 99999985 689999999999999988888999999632 26888888774
No 44
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.69 E-value=2.5e-16 Score=155.31 Aligned_cols=117 Identities=23% Similarity=0.374 Sum_probs=98.0
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCC-ceEEE
Q 001130 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA-AEVHF 427 (1148)
Q Consensus 349 L~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~-~~L~~ 427 (1148)
|+|+|++|++|+.+|..+. +||||+|.+++... +|++++++.||+|||+|.|.+.... ..|.|
T Consensus 2 L~v~vi~a~~L~~~d~~~~---------------~DPyv~v~~~~~~~-kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~ 65 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGT---------------SDPFVRVFYNGQTL-ETSVVKKSCYPRWNEVFEFELMEGADSPLSV 65 (123)
T ss_pred EEEEEEEeeCCCCCCCCCC---------------cCceEEEEECCEEE-eceeecCCCCCccCcEEEEEcCCCCCCEEEE
Confidence 8999999999998887665 89999999988764 9999999999999999999997764 78999
Q ss_pred EEEEccCC-CCcceeeEEEeceeeccCCcccceeeeccCCCC---CCCCCCcEEEEEE
Q 001130 428 FVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGK---PCKPGATLTLSIQ 481 (1148)
Q Consensus 428 ~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk---~~~~~g~L~L~l~ 481 (1148)
+|||++.. .+++||++.+++.++..+...+.||.|.....+ ..+..|.|+|.|+
T Consensus 66 ~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 66 EVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred EEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 99999975 478999999999999877777899999753222 1234567777653
No 45
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.69 E-value=2e-16 Score=157.84 Aligned_cols=120 Identities=23% Similarity=0.406 Sum_probs=100.0
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE------EEEeeeeeeCCCCCeeceEEEEEecCC
Q 001130 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA------VVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1148)
Q Consensus 348 tL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~------~~~RTkvi~nt~NPvWNE~F~f~v~~~ 421 (1148)
+|+|+|++|++|+.+|..+. +||||+|.+.+. ...||++++++.||+|||+|.|.+...
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~---------------~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~ 65 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGA---------------SDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR 65 (133)
T ss_pred CEEEEEEEeECCCcccCCCC---------------cCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC
Confidence 38999999999998887765 899999999764 235999999999999999999998766
Q ss_pred CceEEEEEEEccCC-CCcceeeEEEeceeeccCCc------ccceeeeccCCCCCCCCCCcEEEEEEEe
Q 001130 422 AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGK------VEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1148)
Q Consensus 422 ~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~------~d~W~pL~~~~Gk~~~~~g~L~L~l~f~ 483 (1148)
...|.|+|||++.. .+++||++.+++.++..+.. .+.||+|....++ .+..|+|+|++.|.
T Consensus 66 ~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~-~~~~G~l~~~~~~~ 133 (133)
T cd04033 66 EHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSK-SRVKGHLRLYMAYL 133 (133)
T ss_pred CCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCC-CcceeEEEEEEeeC
Confidence 67899999999985 58999999999999986532 4589999754322 23468999999984
No 46
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.69 E-value=1.3e-16 Score=157.35 Aligned_cols=100 Identities=19% Similarity=0.272 Sum_probs=85.5
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC------EEEEeeeeeeCCCCCeeceEEEEEecCC
Q 001130 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG------AVVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1148)
Q Consensus 348 tL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g------~~~~RTkvi~nt~NPvWNE~F~f~v~~~ 421 (1148)
.|+|+|++|++|+.++. |. +||||+|++.+ .+..||+++++++||+|||+|.|.+...
T Consensus 1 kL~V~Vi~A~~L~~~d~-g~---------------~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~ 64 (120)
T cd08395 1 KVTVKVVAANDLKWQTT-GM---------------FRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNE 64 (120)
T ss_pred CEEEEEEECcCCCcccC-CC---------------CCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCc
Confidence 38999999999998774 54 89999999832 2335899999999999999999998642
Q ss_pred ----CceEEEEEEEccCCC-CcceeeEEEeceeeccCCcccceeeec
Q 001130 422 ----AAEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1148)
Q Consensus 422 ----~~~L~~~V~D~D~~~-ddfIG~v~IpL~eL~~G~~~d~W~pL~ 463 (1148)
...|+|.|+|+|..+ +++||++.||+.++..+...+.|++|.
T Consensus 65 ~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~ 111 (120)
T cd08395 65 DDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPLG 111 (120)
T ss_pred CCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEECc
Confidence 257999999999754 889999999999999888888999994
No 47
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.69 E-value=7.4e-17 Score=163.92 Aligned_cols=98 Identities=24% Similarity=0.472 Sum_probs=90.5
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCC
Q 001130 343 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA 422 (1148)
Q Consensus 343 ~Ll~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~ 422 (1148)
.++.|.|+|+|++|.||...|+.++ +||||+|.+++++. ||+++.+++||+|||+|+|.+.++.
T Consensus 2 ~~~vGLL~v~v~~g~~L~~rD~~~s---------------SDPyVVl~lg~q~l-kT~~v~~n~NPeWNe~ltf~v~d~~ 65 (168)
T KOG1030|consen 2 EMLVGLLRVRVKRGKNLAIRDFLGS---------------SDPYVVLELGNQKL-KTRVVYKNLNPEWNEELTFTVKDPN 65 (168)
T ss_pred CccceEEEEEEEeecCeeeeccccC---------------CCCeEEEEECCeee-eeeeecCCCCCcccceEEEEecCCC
Confidence 3578999999999999999998766 89999999999997 9999999999999999999999999
Q ss_pred ceEEEEEEEccC-CCCcceeeEEEeceeeccCCcc
Q 001130 423 AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKV 456 (1148)
Q Consensus 423 ~~L~~~V~D~D~-~~ddfIG~v~IpL~eL~~G~~~ 456 (1148)
..|+++|||+|. ..|||||.+.|++..+..+...
T Consensus 66 ~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~~~ 100 (168)
T KOG1030|consen 66 TPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQKM 100 (168)
T ss_pred ceEEEEEEeCCCCCcccccceeeeccHHHHHHhhh
Confidence 999999999999 5699999999999999976544
No 48
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.68 E-value=6.3e-16 Score=153.50 Aligned_cols=121 Identities=18% Similarity=0.257 Sum_probs=101.2
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCCceE
Q 001130 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEV 425 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~~~L 425 (1148)
++.|+|+|++|++|+..|.+|. +||||+|.++++.. ||++++++.||+|||+|.|.+......|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~---------------~dPyv~v~~~~~~~-kT~v~~~t~nP~Wne~f~f~~~~~~~~l 65 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGG---------------ADPYVIIKCEGESV-RSPVQKDTLSPEFDTQAIFYRKKPRSPI 65 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCC---------------cCccEEEEECCEEE-EeCccCCCCCCcccceEEEEecCCCCEE
Confidence 4679999999999998887776 89999999999875 9999999999999999999988777899
Q ss_pred EEEEEEccCCCCcceeeEEEeceeeccCCcccceeeeccCCC-CCCCCCCcEEEEEEEec
Q 001130 426 HFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSG-KPCKPGATLTLSIQYTP 484 (1148)
Q Consensus 426 ~~~V~D~D~~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~G-k~~~~~g~L~L~l~f~p 484 (1148)
.|+|||++..++++||.+.+++.++.. ....|++|..... ...+..|.|.|++.+.+
T Consensus 66 ~i~V~d~~~~~d~~lG~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 66 KIQVWNSNLLCDEFLGQATLSADPNDS--QTLRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred EEEEEECCCCCCCceEEEEEecccCCC--cCceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 999999999889999999999987653 3457888853211 11234579999998765
No 49
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.67 E-value=5.3e-16 Score=153.90 Aligned_cols=117 Identities=33% Similarity=0.592 Sum_probs=101.9
Q ss_pred EEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCC---CceEEEEE
Q 001130 353 IYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFV 429 (1148)
Q Consensus 353 V~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~---~~~L~~~V 429 (1148)
|++|++|++ ..++ +||||+|.+.+.+. ||++++++.||+|||+|.|.+.+. ...|.|+|
T Consensus 2 vi~a~~L~~--~~g~---------------~Dpyv~v~~~~~~~-kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v 63 (127)
T cd08373 2 VVSLKNLPG--LKGK---------------GDRIAKVTFRGVKK-KTRVLENELNPVWNETFEWPLAGSPDPDESLEIVV 63 (127)
T ss_pred eEEeeCCcc--cCCC---------------CCCEEEEEECCEee-ecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEE
Confidence 789999986 4454 89999999988764 999999999999999999999764 47899999
Q ss_pred EEccCC-CCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEEEecccccc
Q 001130 430 KDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLS 489 (1148)
Q Consensus 430 ~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~p~~~~~ 489 (1148)
||++.. ++++||++.+++.++..+.....|++|.+.++++. .|+|++.++|.|...+-
T Consensus 64 ~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~--~~~l~l~~~~~~~~~~~ 122 (127)
T cd08373 64 KDYEKVGRNRLIGSATVSLQDLVSEGLLEVTEPLLDSNGRPT--GATISLEVSYQPPDGAV 122 (127)
T ss_pred EECCCCCCCceEEEEEEEhhHcccCCceEEEEeCcCCCCCcc--cEEEEEEEEEeCCCCcc
Confidence 999985 57999999999999998888889999988777754 47999999999987653
No 50
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.67 E-value=2.5e-16 Score=155.70 Aligned_cols=101 Identities=25% Similarity=0.407 Sum_probs=87.6
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEeeeeeeCCCCCeeceEEEEEe-cC
Q 001130 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPV-AH 420 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~RTkvi~nt~NPvWNE~F~f~v-~~ 420 (1148)
.|+|.|+|++|++|+.+| .+. +||||+|.+.. ...+||++++++.||+|||+|.|.+ ..
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~---------------~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~ 75 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSD---------------PDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPV 75 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCC---------------CCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCCh
Confidence 688999999999999888 555 89999999963 2235999999999999999999987 32
Q ss_pred ---CCceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeee
Q 001130 421 ---SAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1148)
Q Consensus 421 ---~~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL 462 (1148)
....|.|+|||+|.. ++++||++.|+|+++..+...+.||+|
T Consensus 76 ~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 76 EDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred HHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 247899999999984 589999999999999988778899987
No 51
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.67 E-value=3.5e-16 Score=150.31 Aligned_cols=98 Identities=26% Similarity=0.518 Sum_probs=86.9
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCC-CceEEE
Q 001130 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHF 427 (1148)
Q Consensus 349 L~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~-~~~L~~ 427 (1148)
|.|+|++|++|+..+..+. +||||+|.++++. .||++++++.||+|||+|.|.+.++ .+.|.|
T Consensus 2 L~V~v~~A~~L~~~~~~~~---------------~dpyv~v~~~~~~-~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v 65 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKE---------------PSPYVELTVGKTT-QKSKVKERTNNPVWEEGFTFLVRNPENQELEI 65 (105)
T ss_pred EEEEEeeecCCCCcccCCC---------------CCcEEEEEECCEE-EeCccccCCCCCcccceEEEEeCCCCCCEEEE
Confidence 8999999999998876554 8999999999965 5999999999999999999999875 478999
Q ss_pred EEEEccCCCCcceeeEEEeceeeccCC--cccceeeecc
Q 001130 428 FVKDSDVVGSELIGTVAIPVEQIYSGG--KVEGTYPVLN 464 (1148)
Q Consensus 428 ~V~D~D~~~ddfIG~v~IpL~eL~~G~--~~d~W~pL~~ 464 (1148)
+|+|++. +++||++.|+|.+|..+. ..+.||+|.+
T Consensus 66 ~v~d~~~--~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 66 EVKDDKT--GKSLGSLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred EEEECCC--CCccEEEEEEHHHhhccccceeeeeEecCC
Confidence 9999887 889999999999998653 5789999963
No 52
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.66 E-value=7.8e-16 Score=155.14 Aligned_cols=114 Identities=21% Similarity=0.360 Sum_probs=95.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCC-ceE
Q 001130 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA-AEV 425 (1148)
Q Consensus 347 GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~-~~L 425 (1148)
|.|+|+|++|++|+.+|..+. +||||+|.+++.. .||++++++.||.|||+|.|.+.+.. ..|
T Consensus 15 G~L~V~Vi~A~~L~~~d~~g~---------------~DPYv~v~~~~~~-~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l 78 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSNGK---------------SDPYCEVSMGSQE-HKTKVVSDTLNPKWNSSMQFFVKDLEQDVL 78 (136)
T ss_pred EEEEEEEEEeeCCCCCCCCCC---------------cCcEEEEEECCEe-eeccccCCCCCCccCceEEEEecCccCCEE
Confidence 789999999999998887775 8999999998876 49999999999999999999997654 789
Q ss_pred EEEEEEccCC-CCcceeeEEEeceeeccC-----CcccceeeeccCCCCCCCCCCcEEEEEEE
Q 001130 426 HFFVKDSDVV-GSELIGTVAIPVEQIYSG-----GKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1148)
Q Consensus 426 ~~~V~D~D~~-~ddfIG~v~IpL~eL~~G-----~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f 482 (1148)
.|+|||+|.. .|++||++.+++.++... .....|+.|. ++ ..|+|+|++.|
T Consensus 79 ~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~---~~---~~g~i~l~~~~ 135 (136)
T cd08375 79 CITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLH---EV---PTGEVVVKLDL 135 (136)
T ss_pred EEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEeccc---cc---cceeEEEEEEe
Confidence 9999999975 589999999999999852 2234566652 32 23699999887
No 53
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.65 E-value=5e-16 Score=150.50 Aligned_cols=100 Identities=25% Similarity=0.477 Sum_probs=87.4
Q ss_pred EEEEEEEeeCCCCCCC-CCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCee-ceEEEEEecCC---Cc
Q 001130 349 LDIWIYSAKNLPNMDM-FHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVW-QQHFYVPVAHS---AA 423 (1148)
Q Consensus 349 L~VtV~eAk~L~~~D~-~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvW-NE~F~f~v~~~---~~ 423 (1148)
|+|+|++|++|+.++. .+. +||||+|.+++.+ +||++++++.||+| ||+|.|.+.+. .+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~---------------~Dpyv~v~~~~~~-~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~ 64 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDL---------------TDAFVEVKFGSTT-YKTDVVKKSLNPVWNSEWFRFEVDDEELQDE 64 (110)
T ss_pred CEEEEEEEECCCccccCCCC---------------CCceEEEEECCee-EecceecCCCCCcccCcEEEEEcChHHcCCC
Confidence 6899999999998874 444 8999999998855 59999999999999 99999998764 36
Q ss_pred eEEEEEEEccCC-CCcceeeEEEeceeecc---CCcccceeeecc
Q 001130 424 EVHFFVKDSDVV-GSELIGTVAIPVEQIYS---GGKVEGTYPVLN 464 (1148)
Q Consensus 424 ~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~---G~~~d~W~pL~~ 464 (1148)
.|.|+|||+|.. ++++||++.+++.+|.. +...++||+|++
T Consensus 65 ~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 65 PLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred eEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 899999999985 57899999999999986 456889999986
No 54
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.65 E-value=3.5e-16 Score=154.06 Aligned_cols=102 Identities=20% Similarity=0.326 Sum_probs=87.7
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEeeeeeeCCCCCeeceEEEEEecC
Q 001130 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1148)
Q Consensus 345 l~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~RTkvi~nt~NPvWNE~F~f~v~~ 420 (1148)
-+|.|.|+|++|+||+.++ .+. +||||+|.+.. ...+||++++++.||+|||+|.|.+.+
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~---------------~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~ 73 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGT---------------CNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNE 73 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCC---------------CCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcCh
Confidence 4678999999999999888 554 89999999953 234599999999999999999999865
Q ss_pred C--CceEEEEEEEccCC--CCcceeeEEEeceeeccCCcccceeee
Q 001130 421 S--AAEVHFFVKDSDVV--GSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1148)
Q Consensus 421 ~--~~~L~~~V~D~D~~--~ddfIG~v~IpL~eL~~G~~~d~W~pL 462 (1148)
. ...|.|+|||++.. ++++||.+.|++.++..|...++||.|
T Consensus 74 ~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 74 RDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred HHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 4 35788999999874 478999999999999988878999986
No 55
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.64 E-value=1.7e-15 Score=149.82 Aligned_cols=116 Identities=20% Similarity=0.308 Sum_probs=93.2
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCCceEEEE
Q 001130 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFF 428 (1148)
Q Consensus 349 L~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~~~L~~~ 428 (1148)
|+|+|++|++|+.++.++. +||||+|.+++...+||++++++.||+|||+|.|.+.. ...|.|+
T Consensus 2 l~v~v~~A~~L~~~~~~~~---------------~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~ 65 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRL---------------PDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQ 65 (123)
T ss_pred eEEEEEEecCCCccCCCCC---------------CCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEE
Confidence 8999999999998887765 89999999986666799999999999999999999965 6789999
Q ss_pred EEEccCCC---CcceeeEEEeceeeccCC-cccceeeeccCCCCC-CCCCCcEEEEE
Q 001130 429 VKDSDVVG---SELIGTVAIPVEQIYSGG-KVEGTYPVLNGSGKP-CKPGATLTLSI 480 (1148)
Q Consensus 429 V~D~D~~~---ddfIG~v~IpL~eL~~G~-~~d~W~pL~~~~Gk~-~~~~g~L~L~l 480 (1148)
|||++..+ +++||++.+++.+|.... ....|++|....... ....|+|.+.+
T Consensus 66 V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 66 VFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 99998754 579999999999987443 336799996543321 11235665554
No 56
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.64 E-value=1.1e-15 Score=150.98 Aligned_cols=103 Identities=19% Similarity=0.331 Sum_probs=90.4
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEEEeeeeeeCCCCCeeceEEEEEecCC--
Q 001130 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVGRTFVISNSEDPVWQQHFYVPVAHS-- 421 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l--~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~-- 421 (1148)
.|.|.|+|++|++|+.+|..+. +||||+|.+ ++...+||++++++.||+|||+|.|.+...
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~---------------~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l 79 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGT---------------ADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQEL 79 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCC---------------CCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHh
Confidence 4789999999999998887765 899999999 445557999999999999999999998654
Q ss_pred -CceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeec
Q 001130 422 -AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1148)
Q Consensus 422 -~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~ 463 (1148)
...|.|+|||+|.. ++++||++.|+++++..+...+.||+|.
T Consensus 80 ~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 80 PKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 36899999999985 5889999999999999777889999984
No 57
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.64 E-value=1.6e-15 Score=149.53 Aligned_cols=104 Identities=35% Similarity=0.593 Sum_probs=93.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCCceEE
Q 001130 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVH 426 (1148)
Q Consensus 347 GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~~~L~ 426 (1148)
|.|+|+|++|++|+..+..+. +||||+|.+++...++|++++++.||+|||+|.|++.+..+.|.
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~---------------~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~ 65 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGK---------------IDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKIT 65 (120)
T ss_pred CeEEEEEEeeECCCCccCCCC---------------cCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEE
Confidence 789999999999998887665 89999999988777899999999999999999999988778999
Q ss_pred EEEEEccCC-CCcceeeEEEeceeeccCCcccceeeeccCC
Q 001130 427 FFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGS 466 (1148)
Q Consensus 427 ~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~ 466 (1148)
|+|||++.. .+++||++.+++.++..+ ..+.||.|++.+
T Consensus 66 v~v~d~~~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 66 LEVMDYEKVGKDRSLGSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred EEEEECCCCCCCCeeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence 999999985 477999999999999976 568999998765
No 58
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.63 E-value=2.2e-15 Score=148.92 Aligned_cols=98 Identities=21% Similarity=0.291 Sum_probs=85.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCCceEE
Q 001130 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVH 426 (1148)
Q Consensus 347 GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~~~L~ 426 (1148)
|.|.|+|++|++|+.++ . .||||+|.+++.+. ||+++++ .||+|||+|.|.+.+....|.
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~---------------~dPYV~Ik~g~~k~-kT~v~~~-~nP~WnE~F~F~~~~~~~~L~ 61 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---K---------------FNTYVTLKVQNVKS-TTIAVRG-SQPCWEQDFMFEINRLDLGLV 61 (127)
T ss_pred ceEEEEEEEeeCCCCCC---C---------------CCCeEEEEECCEEe-EeeECCC-CCCceeeEEEEEEcCCCCEEE
Confidence 57999999999997543 2 69999999998774 9999987 599999999999988777799
Q ss_pred EEEEEccCCCCcceeeEEEeceeeccCCcc--cceeeecc
Q 001130 427 FFVKDSDVVGSELIGTVAIPVEQIYSGGKV--EGTYPVLN 464 (1148)
Q Consensus 427 ~~V~D~D~~~ddfIG~v~IpL~eL~~G~~~--d~W~pL~~ 464 (1148)
|+|||+|.+.|||||++.|+|+++..+... ..||+|..
T Consensus 62 v~V~dkd~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 62 IELWNKGLIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred EEEEeCCCcCCCceEEEEEEhHHcccCCCCCCCccEecCh
Confidence 999999999999999999999999976544 78999953
No 59
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.63 E-value=1.4e-15 Score=155.38 Aligned_cols=104 Identities=20% Similarity=0.338 Sum_probs=85.8
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE----EEEeeeeeeCCCCCeeceEEEEEec----
Q 001130 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA----VVGRTFVISNSEDPVWQQHFYVPVA---- 419 (1148)
Q Consensus 348 tL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~----~~~RTkvi~nt~NPvWNE~F~f~v~---- 419 (1148)
.|.|+|++|++|+. ..|. +||||+|.+.+. ...||+++++++||+|||+|.|.+.
T Consensus 1 kL~V~Vi~ArnL~~--~~g~---------------sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~ 63 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGT---------------CDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSS 63 (148)
T ss_pred CEEEEEEeCcCCCC--CCCC---------------CCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccc
Confidence 38999999999986 3344 899999999762 2359999999999999999999984
Q ss_pred -----------CC-CceEEEEEEEccCC-CCcceeeEEEeceeeccC-CcccceeeeccCCCC
Q 001130 420 -----------HS-AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSG-GKVEGTYPVLNGSGK 468 (1148)
Q Consensus 420 -----------~~-~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G-~~~d~W~pL~~~~Gk 468 (1148)
+. ...|.|.|||++.. .++|||++.|++.+|..+ ...+.||+|...+.+
T Consensus 64 ~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~ 126 (148)
T cd04010 64 PEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEK 126 (148)
T ss_pred cccccccCCcccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccc
Confidence 11 25689999999874 689999999999999976 567899999765444
No 60
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.63 E-value=1.5e-15 Score=154.66 Aligned_cols=106 Identities=19% Similarity=0.276 Sum_probs=89.4
Q ss_pred eceEEEEEEEEeeCCCCCC-CCCccccccccccCCCCCCCCcEEEEEEC--CE--EEEeeeeeeCCCCCeeceEEEEEec
Q 001130 345 LHGNLDIWIYSAKNLPNMD-MFHKTLGGMFNSQMNTKITSDPYVTIAVA--GA--VVGRTFVISNSEDPVWQQHFYVPVA 419 (1148)
Q Consensus 345 l~GtL~VtV~eAk~L~~~D-~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--g~--~~~RTkvi~nt~NPvWNE~F~f~v~ 419 (1148)
..|.|.|+|++|+||+.++ ..+. +||||+|.+. +. ..+||+++++++||+|||+|.|.+.
T Consensus 27 ~~~~L~V~Vi~ArnL~~~~~~~g~---------------sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~ 91 (146)
T cd04028 27 KKGQLEVEVIRARGLVQKPGSKVL---------------PAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS 91 (146)
T ss_pred CCCEEEEEEEEeeCCCcccCCCCC---------------cCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc
Confidence 4689999999999998764 4444 8999999994 32 2459999999999999999999998
Q ss_pred CCCceEEEEEE-EccC-CCCcceeeEEEeceeeccCCcccceeeeccC
Q 001130 420 HSAAEVHFFVK-DSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNG 465 (1148)
Q Consensus 420 ~~~~~L~~~V~-D~D~-~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~ 465 (1148)
.....|.|+|| |++. .+++|||++.|+|+++..+.....||+|...
T Consensus 92 l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 92 PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 55688999999 5665 4588999999999999877777899999754
No 61
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.63 E-value=1e-15 Score=149.88 Aligned_cols=99 Identities=11% Similarity=0.174 Sum_probs=82.8
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC---EEEEeeeeeeCCCCCeeceEEEEEecCC-
Q 001130 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG---AVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g---~~~~RTkvi~nt~NPvWNE~F~f~v~~~- 421 (1148)
.|.|.|+|++|++|+ + .++ +||||+|.+.. ....+|+|+++|+||+|||+|.|.+...
T Consensus 13 ~~~L~V~vikA~~L~-~--~g~---------------sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~ 74 (118)
T cd08677 13 KAELHVNILEAENIS-V--DAG---------------CECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEE 74 (118)
T ss_pred CCEEEEEEEEecCCC-C--CCC---------------CCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHH
Confidence 578999999999998 2 243 89999999953 2345999999999999999999998654
Q ss_pred --CceEEEEEEEccC-CCCcceeeEEEeceeeccCCcccceeee
Q 001130 422 --AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1148)
Q Consensus 422 --~~~L~~~V~D~D~-~~ddfIG~v~IpL~eL~~G~~~d~W~pL 462 (1148)
...|.|+|+|+|. .++++||++.+++.++..+...+.|-.|
T Consensus 75 l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 75 SLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred hCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 3679999999999 4699999999999998666666788654
No 62
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.63 E-value=1.2e-15 Score=156.23 Aligned_cols=102 Identities=29% Similarity=0.454 Sum_probs=82.3
Q ss_pred EEEEEEEEeeCCCCCCCCCcc--ccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCC--Cc
Q 001130 348 NLDIWIYSAKNLPNMDMFHKT--LGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS--AA 423 (1148)
Q Consensus 348 tL~VtV~eAk~L~~~D~~g~~--~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~--~~ 423 (1148)
+|.|+|++|++|+.+|..+.. +.+.+ ......+||||+|.+++++. ||++++++.||+|||+|.|++..+ ..
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~---~~~~~~~DPYV~V~~~g~~~-kT~v~~~t~nPvWNE~f~f~v~~p~~~~ 76 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFL---GEKKELVDPYVEVSFAGQKV-KTSVKKNSYNPEWNEQIVFPEMFPPLCE 76 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccc---cCCCCCcCcEEEEEECCEee-ecceEcCCCCCCcceEEEEEeeCCCcCC
Confidence 389999999999999865410 00111 11233489999999999886 999999999999999999997543 57
Q ss_pred eEEEEEEEccCC-CCcceeeEEEeceeeccC
Q 001130 424 EVHFFVKDSDVV-GSELIGTVAIPVEQIYSG 453 (1148)
Q Consensus 424 ~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G 453 (1148)
.|.|+|||+|.. +|++||++.|++.+|...
T Consensus 77 ~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~ 107 (151)
T cd04018 77 RIKIQIRDWDRVGNDDVIGTHFIDLSKISNS 107 (151)
T ss_pred EEEEEEEECCCCCCCCEEEEEEEeHHHhccC
Confidence 899999999985 799999999999998864
No 63
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.63 E-value=1.1e-15 Score=150.87 Aligned_cols=113 Identities=26% Similarity=0.429 Sum_probs=95.7
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeee-CCCCCeeceEEEEEecCC-----
Q 001130 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVIS-NSEDPVWQQHFYVPVAHS----- 421 (1148)
Q Consensus 348 tL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~-nt~NPvWNE~F~f~v~~~----- 421 (1148)
+|+|+|++|++|+..+..++ +||||+|.+++....+|+++. ++.||+|||+|.|.+...
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~---------------~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~ 65 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGK---------------MKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQG 65 (125)
T ss_pred CEEEEEEEcccCCCCCcccC---------------CceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccC
Confidence 58999999999998877665 899999999883445999986 489999999999999776
Q ss_pred CceEEEEEEEccC-CCCcceeeEEEeceeeccCCcc-----cceeeeccCCCCCCCCCCcEEE
Q 001130 422 AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKV-----EGTYPVLNGSGKPCKPGATLTL 478 (1148)
Q Consensus 422 ~~~L~~~V~D~D~-~~ddfIG~v~IpL~eL~~G~~~-----d~W~pL~~~~Gk~~~~~g~L~L 478 (1148)
...|.|+|+|++. .++++||++.|++.++..+... ..||+|..++|++. |.|+|
T Consensus 66 ~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~---G~~~~ 125 (125)
T cd04051 66 RLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQ---GVLNF 125 (125)
T ss_pred ccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcC---eEEeC
Confidence 5789999999987 6688999999999999976543 68999998888753 57764
No 64
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.62 E-value=1.9e-15 Score=149.13 Aligned_cols=104 Identities=30% Similarity=0.345 Sum_probs=90.2
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC--EEEEeeeeeeCCCCCeeceEEEEEecCC-
Q 001130 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1148)
Q Consensus 345 l~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g--~~~~RTkvi~nt~NPvWNE~F~f~v~~~- 421 (1148)
-.|+|.|+|++|++|+.+|..+. +||||+|.+.+ ....||++++++.||+|||+|.|.+...
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~---------------~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~ 78 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGT---------------SDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSE 78 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCC---------------CCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHH
Confidence 34789999999999998887665 89999999853 3456999999999999999999998653
Q ss_pred --CceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeec
Q 001130 422 --AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1148)
Q Consensus 422 --~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~ 463 (1148)
...|.|+|||+|.. .+++||++.++++++..|...+.|++|.
T Consensus 79 l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 79 LGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred hCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 36899999999985 5789999999999998888889999984
No 65
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.62 E-value=3.4e-15 Score=148.46 Aligned_cols=114 Identities=25% Similarity=0.397 Sum_probs=95.2
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCCceEEE
Q 001130 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 427 (1148)
Q Consensus 348 tL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~~~L~~ 427 (1148)
.|+|+|++|++|+.+|..+. +||||+|.+++.. +||+++.++.||+|||+|.|.+......|.|
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~---------------~DPyv~v~~~~~~-~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i 65 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGT---------------SDPYVTVQVGKTK-KRTKTIPQNLNPVWNEKFHFECHNSSDRIKV 65 (127)
T ss_pred eEEEEEEECcCCcCCCCCCC---------------cCcEEEEEECCEe-eecceecCCCCCccceEEEEEecCCCCEEEE
Confidence 58999999999998887765 8999999998765 5999999999999999999999766778999
Q ss_pred EEEEccC------------CCCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEE
Q 001130 428 FVKDSDV------------VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSI 480 (1148)
Q Consensus 428 ~V~D~D~------------~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l 480 (1148)
+|||+|. ..+++||++.+++.++.. ..+.||.|...+++. ...|+|.|+|
T Consensus 66 ~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~~~~-~~~G~i~~~~ 127 (127)
T cd04027 66 RVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRTDKS-AVSGAIRLHI 127 (127)
T ss_pred EEEECCCCcccccceeccccCCCcceEEEEEhHHccC--CCCeEEECccCCCCC-cEeEEEEEEC
Confidence 9999985 258899999999998863 356899997654432 3457887764
No 66
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.62 E-value=2.7e-15 Score=149.02 Aligned_cols=103 Identities=21% Similarity=0.353 Sum_probs=87.4
Q ss_pred eceEEEEEEEEeeCCCCCCCC-CccccccccccCCCCCCCCcEEEEEECC----EEEEeeeeeeCCCCCeeceEEEEEec
Q 001130 345 LHGNLDIWIYSAKNLPNMDMF-HKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVA 419 (1148)
Q Consensus 345 l~GtL~VtV~eAk~L~~~D~~-g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~RTkvi~nt~NPvWNE~F~f~v~ 419 (1148)
..|+|.|+|++|+||+..|.. +. +||||+|.+.. ...+||++++++.||+|||+|.|.+.
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~---------------~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~ 77 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKR---------------SNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSIS 77 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCC---------------CCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECC
Confidence 357899999999999977643 33 89999999942 22359999999999999999999986
Q ss_pred CC---CceEEEEEEEccC-CCCcceeeEEEeceeeccCCcccceeee
Q 001130 420 HS---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1148)
Q Consensus 420 ~~---~~~L~~~V~D~D~-~~ddfIG~v~IpL~eL~~G~~~d~W~pL 462 (1148)
.. ...|.|+|||+|. .++++||++.|++.++......+.||+|
T Consensus 78 ~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 78 HSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred HHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 53 3679999999997 4588999999999999988888999998
No 67
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.62 E-value=1.8e-15 Score=146.82 Aligned_cols=99 Identities=27% Similarity=0.391 Sum_probs=85.0
Q ss_pred eEEEEEEEEeeCCCCCCCC-CccccccccccCCCCCCCCcEEEEEECC--EEEEeeeeeeCCCCCeeceEEEEEecCC--
Q 001130 347 GNLDIWIYSAKNLPNMDMF-HKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVAHS-- 421 (1148)
Q Consensus 347 GtL~VtV~eAk~L~~~D~~-g~~~~~~~~k~~~~~~~sDPYV~V~l~g--~~~~RTkvi~nt~NPvWNE~F~f~v~~~-- 421 (1148)
|+|+|+|++|++|+.+|.. +. +||||+|.+.+ +...||++++++.||+|||+|.|.+...
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~---------------~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~ 65 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGS---------------SDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEV 65 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCC---------------CCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhc
Confidence 7899999999999988876 55 89999999953 3456999999999999999999987643
Q ss_pred --CceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeec
Q 001130 422 --AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1148)
Q Consensus 422 --~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~ 463 (1148)
...|.|+|||+|.. .+++||++.+++.+|.. ..+|+++.
T Consensus 66 ~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~~---~~~~~~~~ 107 (111)
T cd04041 66 KAGERLSCRLWDSDRFTADDRLGRVEIDLKELIE---DRNWMGRR 107 (111)
T ss_pred cCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHhc---CCCCCccc
Confidence 46899999999985 58999999999999983 34788884
No 68
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.61 E-value=2.2e-15 Score=149.50 Aligned_cols=103 Identities=18% Similarity=0.258 Sum_probs=87.2
Q ss_pred ceEEEEEEEEeeCCCCCCCC-CccccccccccCCCCCCCCcEEEEEECC----EEEEeeeeeeCCCCCeeceEEEEEecC
Q 001130 346 HGNLDIWIYSAKNLPNMDMF-HKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~-g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~RTkvi~nt~NPvWNE~F~f~v~~ 420 (1148)
.+.|.|+|++|++|+.+|.. +. +||||+|.+.. ...+||++++++.||+|||+|.|.+..
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~---------------~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~ 78 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQR---------------SDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVER 78 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCC---------------CCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCH
Confidence 35799999999999988865 44 89999999942 223599999999999999999999864
Q ss_pred C---CceEEEEEEEccC-CCCcceeeEEEeceeeccCCcccceeeec
Q 001130 421 S---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1148)
Q Consensus 421 ~---~~~L~~~V~D~D~-~~ddfIG~v~IpL~eL~~G~~~d~W~pL~ 463 (1148)
. ...|.|+|||+|. .++++||++.|+|.++..+.....||+|.
T Consensus 79 ~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 79 EELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred HHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 3 3689999999997 45889999999999998777778999983
No 69
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.60 E-value=9.5e-15 Score=144.41 Aligned_cols=113 Identities=23% Similarity=0.257 Sum_probs=94.4
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC--EEEEeeeeeeCCCCCeeceEEEEEecCC-Cce
Q 001130 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVAHS-AAE 424 (1148)
Q Consensus 348 tL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g--~~~~RTkvi~nt~NPvWNE~F~f~v~~~-~~~ 424 (1148)
.|+|+|++|++|+.++..+. +||||+|.+.+ ...+||++++++.||+|||+|.|.+... ...
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~---------------~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~ 66 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGL---------------SDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLW 66 (126)
T ss_pred EEEEEEEEeECCCCCCCCCC---------------CCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCE
Confidence 48999999999998887665 89999999865 3557999999999999999999999875 478
Q ss_pred EEEEEEEccCC-CCcceeeEEEeceeecc---CCcccceeeeccCCCCCCCCCCcEEEEEEEe
Q 001130 425 VHFFVKDSDVV-GSELIGTVAIPVEQIYS---GGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1148)
Q Consensus 425 L~~~V~D~D~~-~ddfIG~v~IpL~eL~~---G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~ 483 (1148)
|.|+|||++.. .+++||++.++|.++.. |...+.|++|. + .|+|+|.+.+.
T Consensus 67 L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~-~-------~g~i~l~~~~~ 121 (126)
T cd04043 67 ISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD-T-------QGRLLLRVSME 121 (126)
T ss_pred EEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcC-C-------CCeEEEEEEEe
Confidence 99999999985 58899999999987653 44567899994 2 25778887764
No 70
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.60 E-value=7.5e-16 Score=183.71 Aligned_cols=155 Identities=25% Similarity=0.323 Sum_probs=125.9
Q ss_pred cCCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeece--------------
Q 001130 285 LSSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG-------------- 347 (1148)
Q Consensus 285 ~~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~G-------------- 347 (1148)
..++-+|+-||.+++| +| |+|.|||||||.|+.||+ +|||||++ |+....|.|--|
T Consensus 607 k~~~iefV~yNK~QlSRIY---PKgtRvdSSNymPqifWn----aGcQmVsLNfQT~dlaMQlN~g~FEyNG~sGYllKP 679 (1189)
T KOG1265|consen 607 KKSPIEFVNYNKRQLSRIY---PKGTRVDSSNYMPQIFWN----AGCQMVSLNFQTPDLAMQLNMGMFEYNGGSGYLLKP 679 (1189)
T ss_pred HhCchHHhhhhhHhhhccc---cCcccccccccchHHHHh----ccceEEEeeccCccHHHHhhhhheeecCCccceeCh
Confidence 3788999999999999 99 999999999999998888 99999999 888775544333
Q ss_pred ------------------------EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC------EEEE
Q 001130 348 ------------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG------AVVG 397 (1148)
Q Consensus 348 ------------------------tL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g------~~~~ 397 (1148)
||.|+|++|.=|..++ ..-||.|.+-| .+..
T Consensus 680 dfmRrpDr~fdPFse~~VdgvIA~t~sV~VISgqFLSdrk-------------------vgtyVEVdmfgLP~Dt~Rk~~ 740 (1189)
T KOG1265|consen 680 DFMRRPDRQFDPFSESPVDGVIAATLSVTVISGQFLSDRK-------------------VGTYVEVDMFGLPTDTIRKEF 740 (1189)
T ss_pred HHhhCCCcCcCCcccCcccceEEeeEEEEEEeeeeccccc-------------------cCceEEEEecCCCchhhhhhh
Confidence 7999999999887543 34699999865 1224
Q ss_pred eeeeeeC-CCCCeece-EEEEE-ecCC-CceEEEEEEEccCCCCcceeeEEEeceeeccCCcccceeeeccCCCCCCC
Q 001130 398 RTFVISN-SEDPVWQQ-HFYVP-VAHS-AAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCK 471 (1148)
Q Consensus 398 RTkvi~n-t~NPvWNE-~F~f~-v~~~-~~~L~~~V~D~D~~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~ 471 (1148)
||+++.+ +.||+||| -|.|. |.-+ .+.|+|.|++. +..|||+-.+||.-|..|. +.+-|.+..+.+..
T Consensus 741 rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeE---ggK~ig~RIlpvd~l~~GY---rhv~LRse~Nqpl~ 812 (1189)
T KOG1265|consen 741 RTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEE---GGKFIGQRILPVDGLNAGY---RHVCLRSESNQPLT 812 (1189)
T ss_pred hhccccCCCCCcccccCCcccceecccchhheeeeeecc---CCceeeeeccchhcccCcc---eeEEecCCCCCccc
Confidence 8888775 99999997 57886 3333 38899999985 5689999999999999997 56888777777654
No 71
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.60 E-value=4.5e-15 Score=146.78 Aligned_cols=101 Identities=24% Similarity=0.357 Sum_probs=88.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEeeeeeeCCCCCeeceEEEEEecCC-
Q 001130 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1148)
Q Consensus 347 GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~RTkvi~nt~NPvWNE~F~f~v~~~- 421 (1148)
+.|+|+|++|+||+.++..+. +||||+|.+.. ...+||++++++.||+|||+|.|.+...
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~---------------~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~ 80 (127)
T cd04030 16 QKLIVTVHKCRNLPPCDSSDI---------------PDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE 80 (127)
T ss_pred CEEEEEEEEEECCCCccCCCC---------------CCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHH
Confidence 679999999999998887665 89999999953 3346999999999999999999998543
Q ss_pred --CceEEEEEEEccCC---CCcceeeEEEeceeeccCCcccceeee
Q 001130 422 --AAEVHFFVKDSDVV---GSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1148)
Q Consensus 422 --~~~L~~~V~D~D~~---~ddfIG~v~IpL~eL~~G~~~d~W~pL 462 (1148)
...|.|.|||++.. .+++||++.|++.+|..+...++||+|
T Consensus 81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 36899999999873 689999999999999888788899998
No 72
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.60 E-value=1.6e-14 Score=145.24 Aligned_cols=118 Identities=21% Similarity=0.321 Sum_probs=95.6
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCC------
Q 001130 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS------ 421 (1148)
Q Consensus 348 tL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~------ 421 (1148)
.|+|+|++|++|+.+|..+. +||||+|.+++... ||++++++.||+|||+|.|.+...
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~-kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~ 65 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGL---------------SDPFARVSFLNQSQ-ETEVIKETLSPTWDQTLIFDEVELYGSPEE 65 (135)
T ss_pred EEEEEEEEeecCcCCCCCCC---------------CCCEEEEEECCeee-EeeeEcCCCCCccCcEEEEeeeeccCChHH
Confidence 38999999999999888776 89999999988764 999999999999999999975321
Q ss_pred ----CceEEEEEEEccCC-CCcceeeEEE-eceeecc---CCcccceeeeccCCCCCCCCCCcEEEEEEEecc
Q 001130 422 ----AAEVHFFVKDSDVV-GSELIGTVAI-PVEQIYS---GGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPM 485 (1148)
Q Consensus 422 ----~~~L~~~V~D~D~~-~ddfIG~v~I-pL~eL~~---G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~p~ 485 (1148)
...|.|+|||+|.. .|++||++.+ ++..+.. +.....|++|. +.|+ ..|+|.|.+.+.++
T Consensus 66 ~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~-~~~~---~~Geil~~~~~~~~ 134 (135)
T cd04017 66 IAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIY-KGGQ---SAGELLAAFELIEV 134 (135)
T ss_pred hhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEee-cCCC---chhheeEEeEEEEe
Confidence 25699999999985 4789999987 5555553 35667999996 3343 34799999988764
No 73
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.60 E-value=5.5e-15 Score=143.17 Aligned_cols=97 Identities=23% Similarity=0.353 Sum_probs=80.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCC--ce
Q 001130 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA--AE 424 (1148)
Q Consensus 347 GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~--~~ 424 (1148)
|.|.|+|++|++|+..|.... ....+||||+|.+++... ||++++++.||+|||+|.|.+.+.. ..
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~-----------~~~~~DPYv~v~~~~~~~-kT~v~~~t~nPvWne~f~f~v~~~~~~~~ 68 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTR-----------TGFDMDPFVIISFGRRVF-RTSWRRHTLNPVFNERLAFEVYPHEKNFD 68 (108)
T ss_pred CEEEEEEEeeeCCCCccccCC-----------CCCccCceEEEEECCEeE-eeeeecCCCCCcccceEEEEEeCccCCCE
Confidence 789999999999998764321 011279999999987664 9999999999999999999986543 57
Q ss_pred EEEEEEEccCC-CCcceeeEEEeceeeccCCc
Q 001130 425 VHFFVKDSDVV-GSELIGTVAIPVEQIYSGGK 455 (1148)
Q Consensus 425 L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~ 455 (1148)
|.|+|||+|.. .+++||++.++|++|..+..
T Consensus 69 L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 69 IQFKVLDKDKFSFNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred EEEEEEECCCCCCCcceEEEEEEHHHHHhhCC
Confidence 99999999974 68999999999999997643
No 74
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.59 E-value=2e-15 Score=154.86 Aligned_cols=119 Identities=22% Similarity=0.335 Sum_probs=96.5
Q ss_pred ccCCCCCCCCCcccccCCCCCcceeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE----
Q 001130 319 YAHSDSFNGQNMQIVPSTKGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA---- 394 (1148)
Q Consensus 319 ~~~~~~~~~~g~q~Va~q~~~~~~~Ll~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~---- 394 (1148)
|.+....|...+-.|+ +..+. .+.|+|+|++|++|..+|..|. +||||+|.+...
T Consensus 6 ~~~~~~~~~~~~~~~~-~~~~~-----~~~L~V~vi~a~~L~~~d~~g~---------------~DPyv~v~l~~~~~~~ 64 (153)
T cd08676 6 FGVSPEEHEALLERVR-EAEPP-----IFVLKVTVIEAKGLLAKDVNGF---------------SDPYCMLGIVPASRER 64 (153)
T ss_pred hCCCHHHHHHHHHHHH-hcCCC-----eEEEEEEEEeccCCcccCCCCC---------------CCceEEEEEccccccc
Confidence 5555666665555565 32222 3469999999999999998776 899999999531
Q ss_pred ------------------------EEEeeeeeeCCCCCeeceEEEEEecCC-CceEEEEEEEccCCCCcceeeEEEecee
Q 001130 395 ------------------------VVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHFFVKDSDVVGSELIGTVAIPVEQ 449 (1148)
Q Consensus 395 ------------------------~~~RTkvi~nt~NPvWNE~F~f~v~~~-~~~L~~~V~D~D~~~ddfIG~v~IpL~e 449 (1148)
.++||++++++.||+|||+|.|.+.+. ...|.|+|||++ +++||++.|++++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~ 141 (153)
T cd08676 65 NSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKD 141 (153)
T ss_pred ccccccccccccccccccccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHH
Confidence 246999999999999999999999765 478999999998 8999999999999
Q ss_pred eccCCcccceeee
Q 001130 450 IYSGGKVEGTYPV 462 (1148)
Q Consensus 450 L~~G~~~d~W~pL 462 (1148)
|. +...+.||+|
T Consensus 142 l~-~~~~d~W~~L 153 (153)
T cd08676 142 LP-SCGLDSWFKL 153 (153)
T ss_pred hC-CCCCCCeEeC
Confidence 98 4457999987
No 75
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.59 E-value=7.3e-15 Score=142.80 Aligned_cols=105 Identities=32% Similarity=0.448 Sum_probs=92.2
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCC-CceEEE
Q 001130 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHF 427 (1148)
Q Consensus 349 L~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~-~~~L~~ 427 (1148)
|+|+|++|++|+..+..+. +||||+|.+.+...+||+++.++.||+|||+|.|.+... .+.|.|
T Consensus 1 l~v~vi~a~~L~~~~~~~~---------------~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~ 65 (115)
T cd04040 1 LTVDVISAENLPSADRNGK---------------SDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKV 65 (115)
T ss_pred CEEEEEeeeCCCCCCCCCC---------------CCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEE
Confidence 5899999999998876665 899999999887767999999999999999999998764 578999
Q ss_pred EEEEccCC-CCcceeeEEEeceeeccCCcccceeeeccCCCC
Q 001130 428 FVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGK 468 (1148)
Q Consensus 428 ~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk 468 (1148)
+|||++.. ++++||++.+++.++..+...+.|++|....|.
T Consensus 66 ~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~~ 107 (115)
T cd04040 66 EVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGGG 107 (115)
T ss_pred EEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcCCCCc
Confidence 99999975 588999999999999988888999999755443
No 76
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.59 E-value=1.6e-14 Score=140.68 Aligned_cols=112 Identities=23% Similarity=0.418 Sum_probs=88.8
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCC---CceE
Q 001130 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS---AAEV 425 (1148)
Q Consensus 349 L~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~---~~~L 425 (1148)
|+|+|++|++|+.+ +. +||||+|.+++...+||+++++ .||+|||+|.|.+... ...|
T Consensus 2 L~v~vi~a~~l~~~---~~---------------~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l 62 (117)
T cd08383 2 LRLRILEAKNLPSK---GT---------------RDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTL 62 (117)
T ss_pred eEEEEEEecCCCcC---CC---------------CCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEE
Confidence 89999999999865 43 8999999999977789999999 9999999999999763 3567
Q ss_pred EEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEEE
Q 001130 426 HFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1148)
Q Consensus 426 ~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f 482 (1148)
.|.|+|.+.. .+.++|. ++|..+..+...+.||+|...+++. +..|+|+|.++|
T Consensus 63 ~i~v~d~~~~~~~~~~g~--v~l~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 117 (117)
T cd08383 63 SFYNKDKRSKDRDIVIGK--VALSKLDLGQGKDEWFPLTPVDPDS-EVQGSVRLRARY 117 (117)
T ss_pred EEEEEecccCCCeeEEEE--EEecCcCCCCcceeEEECccCCCCC-CcCceEEEEEEC
Confidence 7888887654 3445665 5555566677788999998665543 345799999987
No 77
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.59 E-value=5.9e-15 Score=145.43 Aligned_cols=102 Identities=22% Similarity=0.317 Sum_probs=84.7
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEeeeeeeCCCCCeeceEEEEEecC-
Q 001130 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAH- 420 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~RTkvi~nt~NPvWNE~F~f~v~~- 420 (1148)
.|.|.|+|++|++|+.++..+. +||||+|.+.+ ...+||++++++.||+|||+|.|.+..
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~---------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~ 79 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSL---------------RNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRR 79 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCC---------------CCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCH
Confidence 3679999999999998887665 89999999965 244699999999999999999998644
Q ss_pred ---CCceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeec
Q 001130 421 ---SAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1148)
Q Consensus 421 ---~~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~ 463 (1148)
....|.|+|||++.. ++++||++.++|++... .....||+|.
T Consensus 80 ~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L~ 125 (125)
T cd04031 80 ETLKERTLEVTVWDYDRDGENDFLGEVVIDLADALL-DDEPHWYPLQ 125 (125)
T ss_pred HHhCCCEEEEEEEeCCCCCCCcEeeEEEEecccccc-cCCcceEECc
Confidence 247899999999974 57899999999998433 3346899983
No 78
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.59 E-value=7.3e-15 Score=145.06 Aligned_cols=101 Identities=26% Similarity=0.489 Sum_probs=90.1
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeC-CCCCeeceEEEEEecCC----
Q 001130 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISN-SEDPVWQQHFYVPVAHS---- 421 (1148)
Q Consensus 347 GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~n-t~NPvWNE~F~f~v~~~---- 421 (1148)
|+|+|+|++|++|++++..+. +||||+|.+.+... +|+++.+ +.||+|||+|.|.+...
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~---------------~dpyv~v~~~~~~~-~T~~~~~~t~nP~Wne~f~f~v~~~~~~~ 64 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGK---------------IDPYVIIQCRTQER-KSKVAKGDGRNPEWNEKFKFTVEYPGWGG 64 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCC---------------cCceEEEEECCEee-eeeEcCCCCCCCcccceEEEEecCcccCC
Confidence 789999999999998887665 89999999988764 8998875 99999999999999876
Q ss_pred CceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeec
Q 001130 422 AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1148)
Q Consensus 422 ~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~ 463 (1148)
...|.|+|+|++.. ++++||++.+++.++..+...+.|++|.
T Consensus 65 ~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~ 107 (124)
T cd04049 65 DTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELV 107 (124)
T ss_pred CCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEee
Confidence 47899999999875 5899999999999999887889999995
No 79
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.58 E-value=8.5e-15 Score=142.23 Aligned_cols=98 Identities=19% Similarity=0.358 Sum_probs=85.4
Q ss_pred CCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCC-CceEEEEEEEccCCCCcceeeEEEeceeecc-CCcccce
Q 001130 382 TSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHFFVKDSDVVGSELIGTVAIPVEQIYS-GGKVEGT 459 (1148)
Q Consensus 382 ~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~-~~~L~~~V~D~D~~~ddfIG~v~IpL~eL~~-G~~~d~W 459 (1148)
.+||||+|.++++..+||++++++.||+|||+|.|.+.+. ...|.|+|+|++..++++||.+.++|+++.. +...+.|
T Consensus 12 ~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~~~w 91 (111)
T cd04052 12 LLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVGQQW 91 (111)
T ss_pred CCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhcccee
Confidence 3899999999988778999999999999999999999876 4779999999998889999999999999864 4456899
Q ss_pred eeeccCCCCCCCCCCcEEEEEEEecc
Q 001130 460 YPVLNGSGKPCKPGATLTLSIQYTPM 485 (1148)
Q Consensus 460 ~pL~~~~Gk~~~~~g~L~L~l~f~p~ 485 (1148)
|+|.+ + ..|+|+++++|.|+
T Consensus 92 ~~L~~---~---~~G~i~~~~~~~p~ 111 (111)
T cd04052 92 FPLSG---N---GQGRIRISALWKPV 111 (111)
T ss_pred EECCC---C---CCCEEEEEEEEecC
Confidence 99964 2 34799999999985
No 80
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.58 E-value=1.1e-14 Score=143.72 Aligned_cols=103 Identities=22% Similarity=0.252 Sum_probs=87.7
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CEEEEeeeeeeCCCCCeeceEEEEEecCC--
Q 001130 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAVVGRTFVISNSEDPVWQQHFYVPVAHS-- 421 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--g~~~~RTkvi~nt~NPvWNE~F~f~v~~~-- 421 (1148)
.++|.|+|++|++|+.+|..+. +||||+|.+. +....||++++++.||+|||+|.|.+...
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~---------------~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~ 79 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGT---------------SDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEK 79 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCC---------------CCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHH
Confidence 3579999999999998887765 8999999993 33446999999999999999999975322
Q ss_pred --CceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeec
Q 001130 422 --AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1148)
Q Consensus 422 --~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~ 463 (1148)
...|.|+|||+|.. ++++||++.|+++++..+...+.|+.|.
T Consensus 80 l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 80 LQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred hCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 35799999999975 5889999999999999888889999984
No 81
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.57 E-value=8.7e-15 Score=146.07 Aligned_cols=102 Identities=23% Similarity=0.280 Sum_probs=85.6
Q ss_pred ceEEEEEEEEeeCCCCCCCC-CccccccccccCCCCCCCCcEEEEEECC----EEEEeeeeeeCCCCCeeceEEEEEecC
Q 001130 346 HGNLDIWIYSAKNLPNMDMF-HKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~-g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~RTkvi~nt~NPvWNE~F~f~v~~ 420 (1148)
.+.|.|+|++|+||+.+|.. +. +||||+|.+.. ....||++++++.||+|||+|.|.+..
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~---------------~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~ 78 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKK---------------CHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEA 78 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCC---------------CCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCH
Confidence 46899999999999988764 54 89999999942 223599999999999999999999865
Q ss_pred C---CceEEEEEEEccC-CCCcceeeEEEeceeecc---CCcccceeee
Q 001130 421 S---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYS---GGKVEGTYPV 462 (1148)
Q Consensus 421 ~---~~~L~~~V~D~D~-~~ddfIG~v~IpL~eL~~---G~~~d~W~pL 462 (1148)
. ...|.|.|||++. .++++||++.|+|+++.. +.....||+|
T Consensus 79 ~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 79 DLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred HHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 3 3689999999997 568899999999999864 3466799998
No 82
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.57 E-value=1.1e-14 Score=143.03 Aligned_cols=102 Identities=24% Similarity=0.415 Sum_probs=86.8
Q ss_pred ceEEEEEEEEeeCCCCCC-CCCccccccccccCCCCCCCCcEEEEEECC--E--EEEeeeeeeCCCCCeeceEEEEEecC
Q 001130 346 HGNLDIWIYSAKNLPNMD-MFHKTLGGMFNSQMNTKITSDPYVTIAVAG--A--VVGRTFVISNSEDPVWQQHFYVPVAH 420 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D-~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g--~--~~~RTkvi~nt~NPvWNE~F~f~v~~ 420 (1148)
.|.|.|+|++|++|+.++ ..+. +||||+|.+.. . ..+||++++++.||+|||+|.|.+..
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~---------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~ 77 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKR---------------SNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISK 77 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCC---------------CCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCH
Confidence 478999999999999887 4444 89999999842 1 34699999999999999999999865
Q ss_pred C---CceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeee
Q 001130 421 S---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1148)
Q Consensus 421 ~---~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL 462 (1148)
. ...|.|+|||++.. .+++||++.+++.++..+...+.||+|
T Consensus 78 ~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 78 SQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred HHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 3 36899999999974 578999999999999878778899987
No 83
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.56 E-value=1.9e-14 Score=139.49 Aligned_cols=97 Identities=21% Similarity=0.309 Sum_probs=83.6
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCC-----C
Q 001130 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-----A 422 (1148)
Q Consensus 348 tL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~-----~ 422 (1148)
.|+|+|++|++|+ .+. +||||+|.+++++. ||++++++.||+|||+|.|.+..+ .
T Consensus 5 ~l~V~v~~a~~L~----~~~---------------~dpyv~v~~~~~~~-kT~~~~~t~nP~wne~f~f~~~~~~~~l~~ 64 (111)
T cd04011 5 QVRVRVIEARQLV----GGN---------------IDPVVKVEVGGQKK-YTSVKKGTNCPFYNEYFFFNFHESPDELFD 64 (111)
T ss_pred EEEEEEEEcccCC----CCC---------------CCCEEEEEECCEee-eeeEEeccCCCccccEEEEecCCCHHHHhc
Confidence 4899999999998 233 89999999998875 999999999999999999997654 2
Q ss_pred ceEEEEEEEccCC-CCcceeeEEEeceeeccC---Ccccceeeecc
Q 001130 423 AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSG---GKVEGTYPVLN 464 (1148)
Q Consensus 423 ~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G---~~~d~W~pL~~ 464 (1148)
..|.|+|+|++.. ++++||++.|+++++..+ ...+.|++|.+
T Consensus 65 ~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 65 KIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred CeEEEEEEcCcccccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 5799999999985 489999999999999866 34678999965
No 84
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.56 E-value=8.9e-15 Score=146.18 Aligned_cols=108 Identities=22% Similarity=0.342 Sum_probs=91.0
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEeeeeeeCCCCCeeceEEEEEecCC
Q 001130 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~RTkvi~nt~NPvWNE~F~f~v~~~ 421 (1148)
.|.|.|+|++|++|+.+|..+. +||||+|.+.+ ....||++++++.||+|||+|.|.+...
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~---------------~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~ 76 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGY---------------SDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHS 76 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCC---------------CCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHH
Confidence 4789999999999998887765 89999999953 2345999999999999999999998654
Q ss_pred ---CceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeeccCCCCCC
Q 001130 422 ---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1148)
Q Consensus 422 ---~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~ 470 (1148)
...|.|+|||+|.. .+++||++.|++.+ .|...+.|++++...+++.
T Consensus 77 ~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~~~ 127 (133)
T cd08384 77 DLAKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDKKI 127 (133)
T ss_pred HhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCCCCh
Confidence 36799999999974 58999999999985 4666789999987766654
No 85
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.55 E-value=4.3e-14 Score=145.12 Aligned_cols=118 Identities=17% Similarity=0.321 Sum_probs=92.1
Q ss_pred EEEEEEEeeC--CCCCCCCCccccccccccCCCCCCCCcEEEEEE----CCEEEEeeeeeeCCCCCeeceEEEEEecCC-
Q 001130 349 LDIWIYSAKN--LPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV----AGAVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1148)
Q Consensus 349 L~VtV~eAk~--L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l----~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~- 421 (1148)
++++|..|.+ |+..+..+. +||||++++ .+....||+|+++|.||+|||+|.|.+...
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~---------------~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~ 68 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKD---------------LDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKH 68 (155)
T ss_pred eEEEEEEeeccccCCCcCCCC---------------CCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEecccc
Confidence 3455555555 666554444 899999998 344456999999999999999999998644
Q ss_pred --------CceEEEEEEEccCC--CCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEEEec
Q 001130 422 --------AAEVHFFVKDSDVV--GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1148)
Q Consensus 422 --------~~~L~~~V~D~D~~--~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~p 484 (1148)
...|.|+|||++.+ .|++||++.|+|+.+......+.|++|++ ..|+ .+|+|++.++...
T Consensus 69 ~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~-~~k~--~Gg~l~v~ir~r~ 138 (155)
T cd08690 69 RSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMD-GRKA--TGGKLEVKVRLRE 138 (155)
T ss_pred chhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhh-CCCC--cCCEEEEEEEecC
Confidence 24699999999974 69999999999999987767778999974 3343 4579999998653
No 86
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.55 E-value=1.8e-14 Score=143.04 Aligned_cols=102 Identities=21% Similarity=0.298 Sum_probs=85.4
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC-----EEEEeeeeeeCCCCCeeceEEEEEecC
Q 001130 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-----AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g-----~~~~RTkvi~nt~NPvWNE~F~f~v~~ 420 (1148)
.|.|.|+|++|+||+.++..+. +||||+|.+-. ...+||++++++.||+|||+|.|++..
T Consensus 13 ~~~L~V~V~~arnL~~~~~~~~---------------~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~ 77 (124)
T cd08680 13 DSSLVISVEQLRNLSALSIPEN---------------SKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISS 77 (124)
T ss_pred CCEEEEEEeEecCCcccccCCC---------------CCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCH
Confidence 4679999999999998876554 89999999842 224699999999999999999999865
Q ss_pred C---CceEEEEEEEccCC-CCcceeeEEEeceeecc-CCcccceeee
Q 001130 421 S---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYS-GGKVEGTYPV 462 (1148)
Q Consensus 421 ~---~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~-G~~~d~W~pL 462 (1148)
. ...|.|+|||++.. .+++||++.|+++++.. +.....||+|
T Consensus 78 ~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 78 TKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred HHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 3 47899999999874 58899999999999954 3456789876
No 87
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.54 E-value=7.1e-14 Score=138.06 Aligned_cols=116 Identities=29% Similarity=0.501 Sum_probs=95.7
Q ss_pred EEEEEEEEeeCCCCCC--CCCccccccccccCCCCCCCCcEEEEEECC-----EEEEeeeeeeCCC-CCeeceEEEEEec
Q 001130 348 NLDIWIYSAKNLPNMD--MFHKTLGGMFNSQMNTKITSDPYVTIAVAG-----AVVGRTFVISNSE-DPVWQQHFYVPVA 419 (1148)
Q Consensus 348 tL~VtV~eAk~L~~~D--~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g-----~~~~RTkvi~nt~-NPvWNE~F~f~v~ 419 (1148)
.|+|+|++|++|+.++ ..+. +||||+|++.+ ....||+++.++. ||+|||+|.|.+.
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~---------------~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~ 67 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSI---------------VDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVT 67 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCc---------------cCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEe
Confidence 4899999999999876 3443 89999999943 2235999988876 9999999999987
Q ss_pred CCC-ceEEEEEEEccCCCCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEEE
Q 001130 420 HSA-AEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1148)
Q Consensus 420 ~~~-~~L~~~V~D~D~~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f 482 (1148)
.+. ..|.|+|+|++..++++||++.+++++|..|. +|++|.+.+|+.. ..|.|.+.+++
T Consensus 68 ~~~~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~~g~---~~~~l~~~~~~~~-~~~~l~v~~~~ 127 (128)
T cd00275 68 VPELAFLRFVVYDEDSGDDDFLGQACLPLDSLRQGY---RHVPLLDSKGEPL-ELSTLFVHIDI 127 (128)
T ss_pred CCCeEEEEEEEEeCCCCCCcEeEEEEEEhHHhcCce---EEEEecCCCCCCC-cceeEEEEEEE
Confidence 665 67999999999878899999999999997664 7899998888743 34688888875
No 88
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.54 E-value=4.8e-14 Score=140.65 Aligned_cols=102 Identities=25% Similarity=0.358 Sum_probs=83.1
Q ss_pred ceEEEEEEEEeeCCCCCCCC-CccccccccccCCCCCCCCcEEEEEECC--EEEEeeeeeeCCCCCeeceEEEEE-ecC-
Q 001130 346 HGNLDIWIYSAKNLPNMDMF-HKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVP-VAH- 420 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~-g~~~~~~~~k~~~~~~~sDPYV~V~l~g--~~~~RTkvi~nt~NPvWNE~F~f~-v~~- 420 (1148)
.++|.|+|++|++|+.+|.. +. +||||+|.+.. ....||++++++.||+|||+|.|. +..
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~---------------~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~ 79 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGT---------------SDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYN 79 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCC---------------cCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHH
Confidence 35799999999999988765 43 89999999952 334599999999999999999994 332
Q ss_pred --CCceEEEEEEEccCC-CCcceeeEEEeceeeccC--Ccccceeee
Q 001130 421 --SAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSG--GKVEGTYPV 462 (1148)
Q Consensus 421 --~~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G--~~~d~W~pL 462 (1148)
....|+|+|||+|.. ++++||++.|+|+++..+ .....|++|
T Consensus 80 ~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 80 QLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred HhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 135799999999874 688999999999998644 556788887
No 89
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.54 E-value=3.9e-14 Score=139.31 Aligned_cols=103 Identities=18% Similarity=0.243 Sum_probs=87.7
Q ss_pred ceEEEEEEEEeeCCCCCC-CCCccccccccccCCCCCCCCcEEEEEEC--CEEEEeeeeeeCCCCCeeceEEEEEecCC-
Q 001130 346 HGNLDIWIYSAKNLPNMD-MFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D-~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--g~~~~RTkvi~nt~NPvWNE~F~f~v~~~- 421 (1148)
.+.|.|+|++|++|+.++ ..+. +||||+|.+. +...+||++++++.||+|||+|.|.+...
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~---------------~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~ 77 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAH---------------CDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKE 77 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCC---------------CCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHH
Confidence 457999999999999887 4444 8999999983 34456999999999999999999998653
Q ss_pred --CceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeec
Q 001130 422 --AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1148)
Q Consensus 422 --~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~ 463 (1148)
...|.|+|||++.. .+++||++.|+|.++......+.|++|.
T Consensus 78 l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 78 LQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred hcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 35799999999985 4889999999999999877778999984
No 90
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.53 E-value=2.5e-14 Score=143.75 Aligned_cols=108 Identities=27% Similarity=0.402 Sum_probs=90.4
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CEE--EEeeeeeeCCCCCeeceEEEEEecCC
Q 001130 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAV--VGRTFVISNSEDPVWQQHFYVPVAHS 421 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--g~~--~~RTkvi~nt~NPvWNE~F~f~v~~~ 421 (1148)
.++|.|+|++|++|+.+|..+. +||||+|.+. ++. ..||+|++++.||+|||+|.|.+...
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~---------------~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~ 78 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGL---------------ADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSE 78 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCC---------------CCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHH
Confidence 4679999999999998887775 8999999984 332 35899999999999999999998642
Q ss_pred ---CceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeeccCCCCCC
Q 001130 422 ---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1148)
Q Consensus 422 ---~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~ 470 (1148)
...|.|+|||+|.. ++++||++.|++.. .+...+.|++|.+..|++.
T Consensus 79 ~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~~i 129 (136)
T cd08404 79 ELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRRQI 129 (136)
T ss_pred HhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCCee
Confidence 35789999999985 58899999999998 4666789999987777754
No 91
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.53 E-value=3.8e-14 Score=141.21 Aligned_cols=88 Identities=28% Similarity=0.397 Sum_probs=76.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecC--CCce
Q 001130 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAH--SAAE 424 (1148)
Q Consensus 347 GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~--~~~~ 424 (1148)
|+|+|+|++|++|+ .+..+. +||||+|.+++++ +||++++++.||+|||+|.|.... ....
T Consensus 28 ~~L~V~V~~A~~L~-~d~~g~---------------~DPYVkV~~~~~~-~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~ 90 (127)
T cd04032 28 ATLTVTVLRATGLW-GDYFTS---------------TDGYVKVFFGGQE-KRTEVIWNNNNPRWNATFDFGSVELSPGGK 90 (127)
T ss_pred EEEEEEEEECCCCC-cCcCCC---------------CCeEEEEEECCcc-ccCceecCCCCCcCCCEEEEecccCCCCCE
Confidence 67999999999998 455554 8999999998884 599999999999999999997533 3588
Q ss_pred EEEEEEEccCC-CCcceeeEEEeceeec
Q 001130 425 VHFFVKDSDVV-GSELIGTVAIPVEQIY 451 (1148)
Q Consensus 425 L~~~V~D~D~~-~ddfIG~v~IpL~eL~ 451 (1148)
|+|+|||+|.. .+++||++.++|....
T Consensus 91 L~v~V~D~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 91 LRFEVWDRDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred EEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence 99999999985 7999999999998655
No 92
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.52 E-value=2e-14 Score=143.96 Aligned_cols=109 Identities=30% Similarity=0.407 Sum_probs=90.6
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CE--EEEeeeeeeCCCCCeeceEEEEEecC
Q 001130 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GA--VVGRTFVISNSEDPVWQQHFYVPVAH 420 (1148)
Q Consensus 345 l~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--g~--~~~RTkvi~nt~NPvWNE~F~f~v~~ 420 (1148)
.+|+|+|+|++|++|+.+|..+. +||||+|.+. ++ ..+||++++++.||+|||+|.|.+..
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~---------------~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~ 76 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGF---------------SDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPP 76 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCC---------------CCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCH
Confidence 46789999999999999988776 8999999984 32 24599999999999999999999754
Q ss_pred CC---ceEEEEEEEccCCC-CcceeeEEEeceeeccCCcccceeeeccCCCCCC
Q 001130 421 SA---AEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1148)
Q Consensus 421 ~~---~~L~~~V~D~D~~~-ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~ 470 (1148)
.. ..|.|+|||+|..+ +++||++.|++. ..+...+.|++++...|++.
T Consensus 77 ~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~~~~~ 128 (134)
T cd08403 77 ENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANPRKPI 128 (134)
T ss_pred HHhCCCEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCCCCee
Confidence 32 46999999999855 899999999987 34555689999998878754
No 93
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.52 E-value=3.8e-14 Score=147.02 Aligned_cols=103 Identities=25% Similarity=0.369 Sum_probs=84.8
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC----CEEEEeeeeeeCCCCCeeceEEEEEecC
Q 001130 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA----GAVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1148)
Q Consensus 345 l~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~----g~~~~RTkvi~nt~NPvWNE~F~f~v~~ 420 (1148)
..|+|.|+|++|+||+.+|..+. +||||+|.+. +...+||+|++++.||+|||+|.|.+..
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~---------------~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~ 89 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGT---------------SDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVS 89 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCC---------------CCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCC
Confidence 46889999999999998887665 8999999983 2344699999999999999999998532
Q ss_pred C----CceEEEEEEEccCCC-CcceeeEEEeceeeccCCcccceeee
Q 001130 421 S----AAEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPV 462 (1148)
Q Consensus 421 ~----~~~L~~~V~D~D~~~-ddfIG~v~IpL~eL~~G~~~d~W~pL 462 (1148)
. ...|.|+|||+|..+ +++||++.+++.++..-...+.|+.|
T Consensus 90 ~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 90 PEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred HHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 2 257999999999855 89999999999998754445566655
No 94
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.52 E-value=5.6e-14 Score=141.86 Aligned_cols=101 Identities=19% Similarity=0.379 Sum_probs=86.8
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC---EEEEeeeeeeCCCCCeeceEEEEEecCC----
Q 001130 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG---AVVGRTFVISNSEDPVWQQHFYVPVAHS---- 421 (1148)
Q Consensus 349 L~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g---~~~~RTkvi~nt~NPvWNE~F~f~v~~~---- 421 (1148)
|.|+|++|++|+.+ ..+. +||||+|.+.+ ...+||+++.++.||+|||+|.|.+...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~---------------~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~ 64 (137)
T cd08675 1 LSVRVLECRDLALK-SNGT---------------CDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYE 64 (137)
T ss_pred CEEEEEEccCCCcc-cCCC---------------CCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEcccccccc
Confidence 67999999999877 5554 89999999983 3446999999999999999999998654
Q ss_pred ------------CceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeeccC
Q 001130 422 ------------AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNG 465 (1148)
Q Consensus 422 ------------~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~ 465 (1148)
...|.|+|||++.. +++|||++.|++.++..+...+.||+|...
T Consensus 65 ~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 65 KKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred ccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 36799999999986 689999999999999877677899999654
No 95
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.51 E-value=2.6e-14 Score=144.15 Aligned_cols=108 Identities=20% Similarity=0.245 Sum_probs=89.4
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CEE--EEeeeeeeCCCCCeeceEEEEEecCC
Q 001130 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAV--VGRTFVISNSEDPVWQQHFYVPVAHS 421 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--g~~--~~RTkvi~nt~NPvWNE~F~f~v~~~ 421 (1148)
.+.|.|+|++|+||+.+|..+. +||||+|.+- +.+ .+||+|++++.||+|||+|.|.+...
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~---------------~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~ 78 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTT---------------ADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAI 78 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCC---------------CCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHH
Confidence 3579999999999998886665 8999999993 222 34899999999999999999998643
Q ss_pred ---CceEEEEEEEccC-CCCcceeeEEEeceeeccCCcccceeeeccCCCCCC
Q 001130 422 ---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1148)
Q Consensus 422 ---~~~L~~~V~D~D~-~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~ 470 (1148)
...|+|+|+|+|. .++++||++.|+.. ..|...+.|..++...+++.
T Consensus 79 ~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~--~~g~~~~hW~~ml~~~~~~v 129 (136)
T cd08406 79 VLQDLSLRVTVAESTEDGKTPNVGHVIIGPA--ASGMGLSHWNQMLASLRKPV 129 (136)
T ss_pred HhCCcEEEEEEEeCCCCCCCCeeEEEEECCC--CCChhHHHHHHHHHCCCCee
Confidence 4779999999997 56899999999776 45777889999987766643
No 96
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.51 E-value=2.6e-14 Score=143.52 Aligned_cols=109 Identities=27% Similarity=0.401 Sum_probs=90.5
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CE--EEEeeeeeeCCCCCeeceEEEEEecC
Q 001130 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GA--VVGRTFVISNSEDPVWQQHFYVPVAH 420 (1148)
Q Consensus 345 l~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--g~--~~~RTkvi~nt~NPvWNE~F~f~v~~ 420 (1148)
.+|+|+|+|++|++|+.+|..+. +||||+|.+. +. ..+||++++++.||+|||+|.|.+..
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~---------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~ 77 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGL---------------SDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPF 77 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCC---------------CCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCH
Confidence 45789999999999998887765 8999999994 22 34589999999999999999999864
Q ss_pred CC---ceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeeccCCCCCC
Q 001130 421 SA---AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1148)
Q Consensus 421 ~~---~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~ 470 (1148)
.. ..|.|+|||++.. .+++||++.|++.. .|...+.|++|+...+++.
T Consensus 78 ~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~~~~~~~ 129 (136)
T cd08402 78 EQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA--TGAELRHWSDMLASPRRPI 129 (136)
T ss_pred HHhCCCEEEEEEEeCCCCCCCceeEEEEECCcc--CChHHHHHHHHHhCCCCee
Confidence 32 4799999999985 47899999999975 3666789999987766643
No 97
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.51 E-value=2.2e-14 Score=144.84 Aligned_cols=111 Identities=19% Similarity=0.219 Sum_probs=90.9
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC--EE--EEeeeeeeCCCCCeeceEEEEEecC
Q 001130 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--AV--VGRTFVISNSEDPVWQQHFYVPVAH 420 (1148)
Q Consensus 345 l~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g--~~--~~RTkvi~nt~NPvWNE~F~f~v~~ 420 (1148)
..|.|.|+|++|+||..+|.... .++||||+|.+.. ++ .+||++++++.||+|||+|.|.+.+
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~-------------~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~ 79 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLL-------------LGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPS 79 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCC-------------CCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCH
Confidence 35789999999999998874321 1289999999854 22 3599999999999999999999875
Q ss_pred C---CceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeeccCCCCCC
Q 001130 421 S---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1148)
Q Consensus 421 ~---~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~ 470 (1148)
. ...|.|+|+|+|.. ++++||++.|++.. .|...+.|..++...+++.
T Consensus 80 ~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~p~~~v 131 (138)
T cd08407 80 ELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDNPRRQI 131 (138)
T ss_pred HHhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhCCCCch
Confidence 4 36799999999984 58999999999974 6777889999987777754
No 98
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.51 E-value=5.5e-14 Score=139.43 Aligned_cols=101 Identities=19% Similarity=0.259 Sum_probs=85.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CEEEEeeeeeeCCCCCeeceEEEEE-ecCC--
Q 001130 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAVVGRTFVISNSEDPVWQQHFYVP-VAHS-- 421 (1148)
Q Consensus 347 GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--g~~~~RTkvi~nt~NPvWNE~F~f~-v~~~-- 421 (1148)
+.|.|+|++|+||+.++..+. +||||++.+. +....||+++++ .||+|||+|.|+ +...
T Consensus 16 ~~L~V~Vi~a~nL~~~~~~~~---------------~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l 79 (124)
T cd08389 16 RKLTVTVIRAQDIPTKDRGGA---------------SSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEEL 79 (124)
T ss_pred CEEEEEEEEecCCCchhcCCC---------------CCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHh
Confidence 579999999999998886554 8999998873 234469999988 999999999998 5432
Q ss_pred -CceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeec
Q 001130 422 -AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1148)
Q Consensus 422 -~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~ 463 (1148)
...|.|+|+|++.. ++++||++.|+|+++..+.....|++|.
T Consensus 80 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 80 NNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred ccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 46799999999974 4899999999999999888888999984
No 99
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.51 E-value=4e-14 Score=142.21 Aligned_cols=108 Identities=22% Similarity=0.354 Sum_probs=90.6
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CE--EEEeeeeeeCCCCCeeceEEEEEecCC
Q 001130 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GA--VVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--g~--~~~RTkvi~nt~NPvWNE~F~f~v~~~ 421 (1148)
.|+|.|+|++|++|+.++..+. +||||+|.+. +. ...||++++++.||+|||+|.|.+...
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~---------------~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~ 78 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGT---------------SDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLE 78 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCC---------------CCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHH
Confidence 4789999999999998887765 8999999983 22 235999999999999999999997532
Q ss_pred ---CceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeeccCCCCCC
Q 001130 422 ---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1148)
Q Consensus 422 ---~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~ 470 (1148)
...|.|+|+|++.. .+++||++.|++.+. |...+.|++|+...+++.
T Consensus 79 ~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~~~~ 129 (136)
T cd08405 79 RLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPRQPV 129 (136)
T ss_pred HhCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCCCch
Confidence 35799999999985 578999999999876 666789999998777754
No 100
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.51 E-value=2.1e-13 Score=141.96 Aligned_cols=144 Identities=22% Similarity=0.248 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHHhhhcCCcEEEEEecCCCccccccccccccccc
Q 001130 545 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQT 624 (1148)
Q Consensus 545 ~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILVwD~~~s~~~~g~k~~g~m~t 624 (1148)
++++.++++|.+|+++|+|+.|.|++.. ......|.+.|++++++||+|+||+++.......
T Consensus 21 ~~~~~i~~~I~~A~~~I~i~~~~~~~~~-------~~~~~~l~~~L~~a~~rGv~V~il~~~~~~~~~~----------- 82 (176)
T cd00138 21 SDLDALLEAISNAKKSIYIASFYLSPLI-------TEYGPVILDALLAAARRGVKVRILVDEWSNTDLK----------- 82 (176)
T ss_pred hHHHHHHHHHHhhheEEEEEEeEecccc-------cccchHHHHHHHHHHHCCCEEEEEEcccccCCch-----------
Confidence 6799999999999999999999765422 0135789999999999999999998544321100
Q ss_pred ccHHHHHHhhc---CCcEEEEccCcccccccccccccccccccccceEEEEcCCCCCCCccEEEEECCccCCCCCCCCCC
Q 001130 625 HDEETRRVFKH---SSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPH 701 (1148)
Q Consensus 625 ~~~et~~~l~~---~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~ 701 (1148)
........+.. .++++...+.... ...++|+|++|||++ ++++||.|+.+.+|.
T Consensus 83 ~~~~~~~~l~~~~~~~i~~~~~~~~~~------------~~~~~H~K~~iiD~~--------~~~vGS~N~~~~~~~--- 139 (176)
T cd00138 83 ISSAYLDSLRALLDIGVRVFLIRTDKT------------YGGVLHTKLVIVDDE--------TAYIGSANLDGRSLT--- 139 (176)
T ss_pred HHHHHHHHHHHhhcCceEEEEEcCCcc------------cccceeeeEEEEcCC--------EEEEECCcCChhhhh---
Confidence 01122333443 3788776543210 235899999999996 999999999997652
Q ss_pred CCcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCH--HHHHHHHHHHHHHHhh
Q 001130 702 HPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGP--AAYDVLTNFEERWRKA 759 (1148)
Q Consensus 702 H~l~d~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GP--aa~Dl~~~F~qrWn~~ 759 (1148)
.++|+.+.+++| +|.++.+.|.+.|+..
T Consensus 140 ------------------------------~~~e~~~~~~~~~~~~~~~~~~f~~~w~~~ 169 (176)
T cd00138 140 ------------------------------LNSEVGVVIYDPASLAADLKASLERDWNST 169 (176)
T ss_pred ------------------------------hhcceEEEEeChHHHHHHHHHHHHHHHhcC
Confidence 357999999999 7999999999999964
No 101
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.50 E-value=9.5e-14 Score=141.51 Aligned_cols=92 Identities=27% Similarity=0.473 Sum_probs=82.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCCceEE
Q 001130 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVH 426 (1148)
Q Consensus 347 GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~~~L~ 426 (1148)
|.|+|+|++|++|+..|. +. +||||+|.++++. +||++++++.||+|||+|.|.+.++...|.
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~---------------sDPYV~v~~g~~~-~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~ 64 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TS---------------SDPYVVLTLGNQK-VKTRVIKKNLNPVWNEELTLSVPNPMAPLK 64 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CC---------------cCcEEEEEECCEE-EEeeeEcCCCCCeecccEEEEecCCCCEEE
Confidence 889999999999997776 44 8999999998876 499999999999999999999988888999
Q ss_pred EEEEEccCC-CCcceeeEEEeceeeccCCc
Q 001130 427 FFVKDSDVV-GSELIGTVAIPVEQIYSGGK 455 (1148)
Q Consensus 427 ~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~ 455 (1148)
|+|||+|.. .+++||++.+++.+|.....
T Consensus 65 ~~V~D~d~~~~dd~iG~a~i~l~~l~~~~~ 94 (145)
T cd04038 65 LEVFDKDTFSKDDSMGEAEIDLEPLVEAAK 94 (145)
T ss_pred EEEEECCCCCCCCEEEEEEEEHHHhhhhhh
Confidence 999999975 58999999999999986543
No 102
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.50 E-value=7.7e-14 Score=139.10 Aligned_cols=106 Identities=26% Similarity=0.408 Sum_probs=90.4
Q ss_pred eeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEeeeeeeCCCCCeeceEEEEEec
Q 001130 344 LLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVA 419 (1148)
Q Consensus 344 Ll~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~RTkvi~nt~NPvWNE~F~f~v~ 419 (1148)
+-.|+|+|+|++|++|+..+..+. +||||+|.+.+ ...+||++++++.||.|||+|.|.+.
T Consensus 10 ~~~~~l~v~i~~a~nL~~~~~~~~---------------~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~ 74 (131)
T cd04026 10 VKDNKLTVEVREAKNLIPMDPNGL---------------SDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLK 74 (131)
T ss_pred ECCCEEEEEEEEeeCCCCcCCCCC---------------CCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCC
Confidence 344789999999999998776554 89999999963 34579999999999999999999986
Q ss_pred CC--CceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeeccC
Q 001130 420 HS--AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNG 465 (1148)
Q Consensus 420 ~~--~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~ 465 (1148)
.. ...|.|+|||++.. ++++||++.++++++... ..+.||+|.+.
T Consensus 75 ~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 75 PADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred chhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 54 46899999999874 588999999999999854 67899999764
No 103
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.50 E-value=4e-14 Score=140.94 Aligned_cols=108 Identities=27% Similarity=0.377 Sum_probs=92.2
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE----EEEeeeeeeCCCCCeeceEEEEEecCC
Q 001130 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA----VVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~----~~~RTkvi~nt~NPvWNE~F~f~v~~~ 421 (1148)
.|+|.|+|++|++|+..+..+. +||||+|.+.+. ..+||++++++.||+|||+|.|.+...
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~---------------~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~ 77 (134)
T cd00276 13 AERLTVVVLKARNLPPSDGKGL---------------SDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAE 77 (134)
T ss_pred CCEEEEEEEEeeCCCCccCCCC---------------CCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHH
Confidence 3689999999999998876555 899999998642 346999999999999999999998754
Q ss_pred ---CceEEEEEEEccC-CCCcceeeEEEeceeeccCCcccceeeeccCCCCCC
Q 001130 422 ---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1148)
Q Consensus 422 ---~~~L~~~V~D~D~-~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~ 470 (1148)
...|.|+|+|.+. .++++||++.+++.+ .|...+.|++|++..+++.
T Consensus 78 ~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~~ 128 (134)
T cd00276 78 QLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKPI 128 (134)
T ss_pred HhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCce
Confidence 3789999999987 568899999999999 6777899999998777643
No 104
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.49 E-value=1.1e-14 Score=163.34 Aligned_cols=104 Identities=27% Similarity=0.411 Sum_probs=91.2
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC----CEEEEeeeeeeCCCCCeeceEEEEEecCC
Q 001130 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA----GAVVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~----g~~~~RTkvi~nt~NPvWNE~F~f~v~~~ 421 (1148)
...|+|+|.+|+||-+||.+|. +||||++.+- +...+|||+|+.++||+|||+|+|.+...
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGl---------------SDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~ 243 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGL---------------SDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPS 243 (683)
T ss_pred CceEEEEehhhccccccCCCCC---------------CCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccc
Confidence 3469999999999999999997 9999999994 24446999999999999999999998644
Q ss_pred --CceEEEEEEEccC-CCCcceeeEEEeceeeccCCcccceeeeccC
Q 001130 422 --AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNG 465 (1148)
Q Consensus 422 --~~~L~~~V~D~D~-~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~ 465 (1148)
.+.|.|+|||||. +++||+|...+.+++|.. ..+++||.|++.
T Consensus 244 DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~K-~p~~GWyKlLsq 289 (683)
T KOG0696|consen 244 DKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQK-APVDGWYKLLSQ 289 (683)
T ss_pred cccceeEEEEecccccccccccceecccHHHHhh-cchhhHHHHhhh
Confidence 4889999999998 679999999999999985 457899999875
No 105
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.48 E-value=6.3e-14 Score=140.98 Aligned_cols=108 Identities=27% Similarity=0.407 Sum_probs=87.5
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC-C-E--EEEeeeeeeCCCCCeeceEEEEEecCC
Q 001130 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA-G-A--VVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~-g-~--~~~RTkvi~nt~NPvWNE~F~f~v~~~ 421 (1148)
.|.|+|+|++|++|+.+|..+. +||||+|.+. + . ..+||++++++.||+|||+|.|.+...
T Consensus 13 ~~~L~V~vi~a~~L~~~d~~g~---------------~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~ 77 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTDMSQG---------------SDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQE 77 (135)
T ss_pred CCeEEEEEEEecCCCcccCCCC---------------CCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHH
Confidence 3789999999999998887775 8999999983 2 2 235999999999999999999998543
Q ss_pred ---CceEEEEEEEccC-CCCcceeeEEEeceeeccCC-cccceeeeccCCCCCC
Q 001130 422 ---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGG-KVEGTYPVLNGSGKPC 470 (1148)
Q Consensus 422 ---~~~L~~~V~D~D~-~~ddfIG~v~IpL~eL~~G~-~~d~W~pL~~~~Gk~~ 470 (1148)
...|.|+|+|+|. .++++||++.|.. +..|. ..+.|+.|++..+++.
T Consensus 78 ~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~--~~~~~~~~~~W~~l~~~~~~~~ 129 (135)
T cd08410 78 ELENVSLVFTVYGHNVKSSNDFIGRIVIGQ--YSSGPSETNHWRRMLNSQRTAV 129 (135)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEEEEEEEcC--ccCCchHHHHHHHHHhCCCCEe
Confidence 2469999999997 5689999998764 34333 4689999998877754
No 106
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.48 E-value=1.2e-13 Score=138.43 Aligned_cols=91 Identities=27% Similarity=0.415 Sum_probs=79.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC------EEEEeeeeeeCCCCCeeceEEEEEecC
Q 001130 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG------AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1148)
Q Consensus 347 GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g------~~~~RTkvi~nt~NPvWNE~F~f~v~~ 420 (1148)
+.|.|+|++|++|+.++..+. +||||+|.+.+ ...+||+++++|+||+|||+|.|.+..
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~---------------~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~ 80 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGS---------------SDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPP 80 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCC---------------CCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEech
Confidence 469999999999998887665 89999999963 335699999999999999999999865
Q ss_pred C-----CceEEEEEEEccCCC-CcceeeEEEeceeecc
Q 001130 421 S-----AAEVHFFVKDSDVVG-SELIGTVAIPVEQIYS 452 (1148)
Q Consensus 421 ~-----~~~L~~~V~D~D~~~-ddfIG~v~IpL~eL~~ 452 (1148)
. ...|.|+|||++..+ +++||++.++|++|..
T Consensus 81 ~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 81 EQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred hhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 2 368999999999865 8999999999999984
No 107
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.48 E-value=3.8e-13 Score=133.59 Aligned_cols=116 Identities=26% Similarity=0.379 Sum_probs=89.6
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCCceEEE
Q 001130 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 427 (1148)
Q Consensus 348 tL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~~~L~~ 427 (1148)
.|.|+|.+|+ |...+..+. +||||+|.+++...+||++++++.||+|||+|.|.+. ....|.|
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~---------------~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~ 65 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFK---------------PDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEF 65 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCC---------------CCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEE
Confidence 5899999999 544544444 8999999999875679999999999999999999985 4578999
Q ss_pred EEEEccCC-CCcceeeEEEeceeeccCCc-----ccceeeeccCCCCCCCCCCcEEEEE
Q 001130 428 FVKDSDVV-GSELIGTVAIPVEQIYSGGK-----VEGTYPVLNGSGKPCKPGATLTLSI 480 (1148)
Q Consensus 428 ~V~D~D~~-~ddfIG~v~IpL~eL~~G~~-----~d~W~pL~~~~Gk~~~~~g~L~L~l 480 (1148)
+|||++.. .+++||++.++|.++..+.. ...|++|..+..-..+..|.|.+.+
T Consensus 66 ~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 66 KVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 99999985 68999999999999885321 2358888643310123346776654
No 108
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.47 E-value=1.4e-13 Score=137.98 Aligned_cols=110 Identities=17% Similarity=0.261 Sum_probs=85.7
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC--CE--EEEeeeeeeCCC-CCeeceEEEEEec
Q 001130 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GA--VVGRTFVISNSE-DPVWQQHFYVPVA 419 (1148)
Q Consensus 345 l~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~--g~--~~~RTkvi~nt~-NPvWNE~F~f~v~ 419 (1148)
..|.|+|+|++|+||++++..+. +||||+|++- ++ ..+||+++++|. ||+|||+|.|.+.
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~---------------~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~ 76 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLT---------------LSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVT 76 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCC---------------CCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCC
Confidence 34789999999999997643332 7999999984 22 335999999995 6999999999987
Q ss_pred CCC--ceEEEEEEEccC-CCCcceeeEEEeceeeccCCcccceeeeccCCCCCC
Q 001130 420 HSA--AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1148)
Q Consensus 420 ~~~--~~L~~~V~D~D~-~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~ 470 (1148)
... ..|.|+|+|+|. .++++||++.|+.++. .+...++|..++...++++
T Consensus 77 ~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr~~i 129 (135)
T cd08692 77 QQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPEKVV 129 (135)
T ss_pred chhheeEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHhCCCCee
Confidence 654 456777888876 4689999999999864 3455789999987666654
No 109
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.47 E-value=2e-13 Score=134.29 Aligned_cols=97 Identities=29% Similarity=0.401 Sum_probs=83.3
Q ss_pred EEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEE------EEeeeeeeCCCCCeeceEEEEEecC-CCce
Q 001130 352 WIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAV------VGRTFVISNSEDPVWQQHFYVPVAH-SAAE 424 (1148)
Q Consensus 352 tV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~------~~RTkvi~nt~NPvWNE~F~f~v~~-~~~~ 424 (1148)
..++|++|+++|..+. +||||+|.+.+.. .+||++++++.||+|||+|.|.+.. ....
T Consensus 5 ~~i~a~~L~~~d~~g~---------------~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~ 69 (120)
T cd04048 5 LSISCRNLLDKDVLSK---------------SDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQK 69 (120)
T ss_pred EEEEccCCCCCCCCCC---------------CCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeE
Confidence 4588999999888776 8999999997643 5799999999999999999998643 3478
Q ss_pred EEEEEEEccC-----CCCcceeeEEEeceeeccCCcccceeeec
Q 001130 425 VHFFVKDSDV-----VGSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1148)
Q Consensus 425 L~~~V~D~D~-----~~ddfIG~v~IpL~eL~~G~~~d~W~pL~ 463 (1148)
|.|+|||+|. .++++||++.+++.+|..+.....|++|.
T Consensus 70 l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 70 LRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred EEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 9999999995 46899999999999999877777899994
No 110
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=4.6e-13 Score=158.23 Aligned_cols=179 Identities=21% Similarity=0.197 Sum_probs=131.0
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE--EEEeeeeeeCCCCCeeceEEEEEecCC--
Q 001130 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA--VVGRTFVISNSEDPVWQQHFYVPVAHS-- 421 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~--~~~RTkvi~nt~NPvWNE~F~f~v~~~-- 421 (1148)
+..|.|+|++|++|+.+|..|. +||||++.+-.. ...+|+|.++++||+|||+|.|.+...
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g~---------------sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l 230 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGGT---------------SDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEEL 230 (421)
T ss_pred CCEEEEEEEEecCCCcccCCCC---------------CCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHh
Confidence 3469999999999999994443 899999999642 334999999999999999999997654
Q ss_pred -CceEEEEEEEccC-CCCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEEEeccccc-ccccC---CC
Q 001130 422 -AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERL-SFYHR---GV 495 (1148)
Q Consensus 422 -~~~L~~~V~D~D~-~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~p~~~~-~~y~~---Gv 495 (1148)
...|.|.|||.|. .++++||++.+++..+......+.|.+|........+..|+|.++++|.|.... ..+-. ..
T Consensus 231 ~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~ltv~v~kar~L 310 (421)
T KOG1028|consen 231 SNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGRLTVVVIKARNL 310 (421)
T ss_pred ccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCeEEEEEEEecCC
Confidence 4789999999999 569999999999998887666778999976533333334799999999998552 22211 11
Q ss_pred CCCCCCCCCCCCCCccccCCeeEecccccCCCCCCCceeecCCCccchhHH
Q 001130 496 GEGPDYNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKC 546 (1148)
Q Consensus 496 ~~~~~~~gvp~t~~P~r~Gn~V~ly~dg~~~~~~~p~i~l~~g~~y~~~~~ 546 (1148)
.. .+-.+.++ |.+ +++++.++....++++.++....+++.++.+
T Consensus 311 ~~-~~~~~~~d---~~V---k~~l~~~~~~~~kkkT~~~~~~~npv~nesf 354 (421)
T KOG1028|consen 311 KS-MDVGGLSD---PYV---KVTLLDGDKRLSKKKTSVKKKTLNPVFNETF 354 (421)
T ss_pred Cc-ccCCCCCC---ccE---EEEEecCCceeeeeeeecccCCCCCcccccE
Confidence 11 11122333 333 6778877765566677777777776655443
No 111
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.46 E-value=7.1e-13 Score=156.85 Aligned_cols=147 Identities=18% Similarity=0.165 Sum_probs=105.7
Q ss_pred CCceEEEEeecCCcccccCCCChhhhcccccccCcccchhhHHHHHHHHHHHhhccEEEEEEeEeecCCCCcccccccCc
Q 001130 799 ESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGA 878 (1148)
Q Consensus 799 ~~~~vQvlRS~~~~s~~~~P~~P~~~~~~~l~~g~~~~~e~sI~~Ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~ 878 (1148)
..|.++++.|++.+. +|+.. -.+..++++++|.+||++|+|+++||+++.. .
T Consensus 4 ~~~~~~~vesiP~~~--~~~~~-----------------~~~t~~~~~~lI~~Ak~~I~I~s~yf~~~d~-------~-- 55 (424)
T PHA02820 4 DNTIAVITETIPIGM--QFDKV-----------------YLSTFNFWREILSNTTKTLDISSFYWSLSDE-------V-- 55 (424)
T ss_pred cccEEEEEEecCCCC--CCCCC-----------------CCCHHHHHHHHHHhhCcEEEEEeEEEecCcc-------c--
Confidence 346789999987654 23210 1378999999999999999999999995421 0
Q ss_pred CCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCcchhHHHHHHHHhHhhHHHHHHHHHHHcCCceeecccccccc
Q 001130 879 NNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNF 958 (1148)
Q Consensus 879 ~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p~~~s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f 958 (1148)
....+..+..+|++| +++||+|+|+++.. +. + ....+.|+++|+++++.
T Consensus 56 ~~~~G~~i~~aL~~a--A~rGV~VRIL~d~~--~~-------~-------------~~~~~~L~~aGv~v~~~------- 104 (424)
T PHA02820 56 GTNFGTMILNEIIQL--PKRGVRVRIAVNKS--NK-------P-------------LKDVELLQMAGVEVRYI------- 104 (424)
T ss_pred cchhHHHHHHHHHHH--HHCCCEEEEEECCC--CC-------c-------------hhhHHHHHhCCCEEEEE-------
Confidence 011234566777665 46999999999852 10 0 12346799999988631
Q ss_pred cccCCcccccccCCCCCCCCCCCCchhhhhcccCCcceeeeeEEEEEeCeEEEEcccccccccCCCCCCcceEEEEeC
Q 001130 959 FCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQ 1036 (1148)
Q Consensus 959 ~~L~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~IYVHSKlmIVDD~~viIGSANLN~RSm~G~~DsEiav~i~d 1036 (1148)
.... .....+|+|+||||+++++|||+||+.||+. .+.|+++.+.+
T Consensus 105 -~~~~-----------------------------~~~~~~HrK~~VIDg~~~~iGS~Nid~rsl~--~n~E~gv~i~~ 150 (424)
T PHA02820 105 -DITN-----------------------------ILGGVLHTKFWISDNTHIYLGSANMDWRSLT--QVKELGIAIFN 150 (424)
T ss_pred -ecCC-----------------------------CCcccceeeEEEECCCEEEEeCCcCChhhhh--hCCceEEEEec
Confidence 0000 0013589999999999999999999999997 89999998875
No 112
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.46 E-value=5.8e-13 Score=134.46 Aligned_cols=114 Identities=25% Similarity=0.388 Sum_probs=88.4
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC--E----------EEEeeeeeeCCCCCee-ceEEE
Q 001130 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--A----------VVGRTFVISNSEDPVW-QQHFY 415 (1148)
Q Consensus 349 L~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g--~----------~~~RTkvi~nt~NPvW-NE~F~ 415 (1148)
..|++++|++|+ ++.+|+ +||||+|.+.. . ...||+++++++||+| ||+|.
T Consensus 3 ~~~~~~~A~~L~-~~~fg~---------------~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~ 66 (137)
T cd08691 3 FSLSGLQARNLK-KGMFFN---------------PDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFV 66 (137)
T ss_pred EEEEEEEeCCCC-CccCCC---------------CCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEE
Confidence 689999999998 777776 99999999953 1 2469999999999999 99999
Q ss_pred EEecCCCceEEEEEEEccCC----CCcceeeEEEeceeeccCC---cccceeeeccCCCCCCCCCCcEEEEE
Q 001130 416 VPVAHSAAEVHFFVKDSDVV----GSELIGTVAIPVEQIYSGG---KVEGTYPVLNGSGKPCKPGATLTLSI 480 (1148)
Q Consensus 416 f~v~~~~~~L~~~V~D~D~~----~ddfIG~v~IpL~eL~~G~---~~d~W~pL~~~~Gk~~~~~g~L~L~l 480 (1148)
|.+. ....|.|+|+|++.. .+++||++.|++.+|..+. ....|++|...... ..-.|+|.|.+
T Consensus 67 f~v~-~~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~-s~v~G~~~l~~ 136 (137)
T cd08691 67 FVGL-PTDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPT-DHVSGQLTFRF 136 (137)
T ss_pred EEcC-CCCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCC-CcEEEEEEEEe
Confidence 9985 346899999998753 2799999999999998653 34578998533222 22335666554
No 113
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.46 E-value=1.2e-13 Score=139.36 Aligned_cols=108 Identities=19% Similarity=0.266 Sum_probs=89.9
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC--E--EEEeeeeeeCCCCCeeceEEEEEecCC
Q 001130 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--A--VVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g--~--~~~RTkvi~nt~NPvWNE~F~f~v~~~ 421 (1148)
.+.|.|+|++|++|+.++ .+. +||||+|.+.. . ..+||++++++.||+|||+|.|.+...
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~---------------~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~ 77 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAH---------------TSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSR 77 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCC---------------CCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHH
Confidence 367999999999999888 554 89999999853 2 235999999999999999999998533
Q ss_pred ---CceEEEEEEEccC-CCCcceeeEEEeceeeccCCcccceeeeccCCCCC
Q 001130 422 ---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKP 469 (1148)
Q Consensus 422 ---~~~L~~~V~D~D~-~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~ 469 (1148)
...|.|+|+|.+. .++++||++.|+......|...+.|..++...+++
T Consensus 78 ~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~ 129 (137)
T cd08409 78 QLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKEL 129 (137)
T ss_pred HhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCc
Confidence 2679999999986 56889999999987777788889999998665553
No 114
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.44 E-value=7.1e-13 Score=131.43 Aligned_cols=89 Identities=27% Similarity=0.449 Sum_probs=78.6
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEE-EeeeeeeCCCCCeeceEEEEEecCC-CceEE
Q 001130 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVV-GRTFVISNSEDPVWQQHFYVPVAHS-AAEVH 426 (1148)
Q Consensus 349 L~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~-~RTkvi~nt~NPvWNE~F~f~v~~~-~~~L~ 426 (1148)
|+|+|++|++|+++|..+. +||||+|.+++... .||++++++.||+|||+|.|.+..+ .+.|.
T Consensus 2 lrV~Vi~a~~L~~~d~~g~---------------~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~ 66 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGK---------------SDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILK 66 (124)
T ss_pred EEEEEEECcCCCCCCCCCC---------------CCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEE
Confidence 7999999999999887776 89999999988654 5899999999999999999998655 47899
Q ss_pred EEEEEccCC-CCcceeeEEEeceeecc
Q 001130 427 FFVKDSDVV-GSELIGTVAIPVEQIYS 452 (1148)
Q Consensus 427 ~~V~D~D~~-~ddfIG~v~IpL~eL~~ 452 (1148)
|+|||+|.. .+++||++.+++.+..-
T Consensus 67 ~~V~d~d~~~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 67 ISVMDYDLLGSDDLIGETVIDLEDRFF 93 (124)
T ss_pred EEEEECCCCCCCceeEEEEEeeccccc
Confidence 999999985 68999999999987763
No 115
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.43 E-value=2.6e-13 Score=179.57 Aligned_cols=122 Identities=20% Similarity=0.409 Sum_probs=101.9
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCC--
Q 001130 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA-- 422 (1148)
Q Consensus 345 l~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~-- 422 (1148)
+-|.|+|+|++|++|. .+ +++ +||||+|.+++...+||||++++.||+|||+|+|.+.++.
T Consensus 1978 ~~G~L~V~V~~a~nl~-~~-~~~---------------sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~ 2040 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK-QS-MGN---------------TNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKG 2040 (2102)
T ss_pred CCcceEEEEeeccccc-cc-cCC---------------CCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCC
Confidence 4589999999999998 33 343 8999999999764459999999999999999999888765
Q ss_pred ceEEEEEEEccCCCCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEEEec
Q 001130 423 AEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1148)
Q Consensus 423 ~~L~~~V~D~D~~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~p 484 (1148)
..|+|+|||+|.++++.+|.+.|++.++..+.....||+|.+ +|++.+..-.|+|.++|.+
T Consensus 2041 ~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L~~-~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2041 QKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLNP-ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CceEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeeecCc-ccccCCCcceEEEEEEecC
Confidence 679999999999999999999999999998888999999973 3332221124899988864
No 116
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.43 E-value=7.2e-13 Score=130.69 Aligned_cols=99 Identities=23% Similarity=0.334 Sum_probs=81.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEeeeeeeCCCCCeeceEEEEEecCC-
Q 001130 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1148)
Q Consensus 347 GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~RTkvi~nt~NPvWNE~F~f~v~~~- 421 (1148)
++|.|+|++|++|++.+..+. +||||+|.+.+ ...+||++++++.||+|||+|.|.....
T Consensus 15 ~~L~V~v~~a~~L~~~~~~~~---------------~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~ 79 (123)
T cd04035 15 SALHCTIIRAKGLKAMDANGL---------------SDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEE 79 (123)
T ss_pred CEEEEEEEEeeCCCCCCCCCC---------------CCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHH
Confidence 579999999999998877665 89999999832 2346999999999999999999963222
Q ss_pred ---CceEEEEEEEccCCCCcceeeEEEeceeeccCCccccee
Q 001130 422 ---AAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTY 460 (1148)
Q Consensus 422 ---~~~L~~~V~D~D~~~ddfIG~v~IpL~eL~~G~~~d~W~ 460 (1148)
...|.|+|||++..++++||++.+++++|..+...+.|+
T Consensus 80 ~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~ 121 (123)
T cd04035 80 DIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNI 121 (123)
T ss_pred HhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeec
Confidence 368999999998778899999999999999776554444
No 117
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.41 E-value=3.2e-13 Score=136.56 Aligned_cols=109 Identities=20% Similarity=0.302 Sum_probs=88.4
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC---CE--EEEeeeeeeCCCCCeeceEEEEEecC
Q 001130 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA---GA--VVGRTFVISNSEDPVWQQHFYVPVAH 420 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~---g~--~~~RTkvi~nt~NPvWNE~F~f~v~~ 420 (1148)
.|+|.|+|++|+||+.++..+. +||||+|.+. +. ..+||++++++.||+|||+|.|.+..
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~---------------~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~ 78 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKA---------------PDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVAL 78 (138)
T ss_pred CCeEEEEEEEecCCCccccCCC---------------CCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCH
Confidence 4789999999999998887665 8999999993 22 23599999999999999999999864
Q ss_pred C---CceEEEEEEEccC-CCCcceeeEEEeceeeccCCcccceeeeccCCCCCC
Q 001130 421 S---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1148)
Q Consensus 421 ~---~~~L~~~V~D~D~-~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~ 470 (1148)
. ...|.|+|+|++. .++++||++.|++...-. ...+.|+.++...+++.
T Consensus 79 ~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~~~~~~v 131 (138)
T cd08408 79 FQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGE-EEEEHWNEMKESKGQQV 131 (138)
T ss_pred HHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCCc-hHHHHHHHHHhCCCCEE
Confidence 3 3689999999986 568999999998874321 34578999987666643
No 118
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.41 E-value=1.6e-12 Score=127.26 Aligned_cols=79 Identities=16% Similarity=0.363 Sum_probs=66.8
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEeeeeeeCCCCCeeceEEEEEecCCCce
Q 001130 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHSAAE 424 (1148)
Q Consensus 349 L~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~RTkvi~nt~NPvWNE~F~f~v~~~~~~ 424 (1148)
|.|+|++|+||+ +. +||||+|.++. ...+|||++++|+||+|||+|.|.+.. ...
T Consensus 1 L~V~V~~A~~L~-----~~---------------sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~ 59 (118)
T cd08686 1 LNVIVHSAQGFK-----QS---------------ANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQT 59 (118)
T ss_pred CEEEEEeCCCCC-----CC---------------CCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCE
Confidence 689999999996 22 79999999964 345799999999999999999999974 679
Q ss_pred EEEEEEEcc-------C-CCCcceeeEEEece
Q 001130 425 VHFFVKDSD-------V-VGSELIGTVAIPVE 448 (1148)
Q Consensus 425 L~~~V~D~D-------~-~~ddfIG~v~IpL~ 448 (1148)
|+|.|||++ . ..|++||.+.|.|.
T Consensus 60 L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 60 LRILCYEKCYSKVKLDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred EEEEEEEcccccccccccCcccEEEEEEEEEC
Confidence 999999983 3 45889988888774
No 119
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.35 E-value=1.1e-11 Score=129.08 Aligned_cols=130 Identities=23% Similarity=0.295 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHHhhccEEEEEEeEeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCcc
Q 001130 839 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAA 918 (1148)
Q Consensus 839 ~sI~~Ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p~~~s 918 (1148)
.++.++++++|++|++.|+|+++||.+.. .....++..+|.+|. ++|++|+||+........
T Consensus 20 ~~~~~~i~~~I~~A~~~I~i~~~~~~~~~------------~~~~~~l~~~L~~a~--~rGv~V~il~~~~~~~~~---- 81 (176)
T cd00138 20 RSDLDALLEAISNAKKSIYIASFYLSPLI------------TEYGPVILDALLAAA--RRGVKVRILVDEWSNTDL---- 81 (176)
T ss_pred chHHHHHHHHHHhhheEEEEEEeEecccc------------cccchHHHHHHHHHH--HCCCEEEEEEcccccCCc----
Confidence 47899999999999999999999998631 000236777887775 469999999998653210
Q ss_pred hhHHHHHHHHhHhhHHHHHHHHHHHc---CCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCCcc
Q 001130 919 TQRILFWQHKTMQMMYETIYKALVEV---GLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFM 995 (1148)
Q Consensus 919 ~~~il~~~~rTm~~~~~si~~~L~~~---Gv~~~~~P~~Yl~f~~L~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 995 (1148)
.....+.+.|.+. |++++..+ ... ...
T Consensus 82 -------------~~~~~~~~~l~~~~~~~i~~~~~~----------~~~---------------------------~~~ 111 (176)
T cd00138 82 -------------KISSAYLDSLRALLDIGVRVFLIR----------TDK---------------------------TYG 111 (176)
T ss_pred -------------hHHHHHHHHHHHhhcCceEEEEEc----------CCc---------------------------ccc
Confidence 0112344556554 56554210 000 012
Q ss_pred eeeeeEEEEEeCeEEEEcccccccccCCCCCCcceEEEEeCcc
Q 001130 996 IYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPE 1038 (1148)
Q Consensus 996 IYVHSKlmIVDD~~viIGSANLN~RSm~G~~DsEiav~i~dp~ 1038 (1148)
..+|+|+||||++.++|||+|++.+++. .|.|+++.+.+++
T Consensus 112 ~~~H~K~~iiD~~~~~vGS~N~~~~~~~--~~~e~~~~~~~~~ 152 (176)
T cd00138 112 GVLHTKLVIVDDETAYIGSANLDGRSLT--LNSEVGVVIYDPA 152 (176)
T ss_pred cceeeeEEEEcCCEEEEECCcCChhhhh--hhcceEEEEeChH
Confidence 4789999999999999999999999998 7999999999986
No 120
>PRK13912 nuclease NucT; Provisional
Probab=99.31 E-value=4.4e-11 Score=126.00 Aligned_cols=140 Identities=21% Similarity=0.288 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHHhhhcCCcEEEEEecCCCccccccccccccccc
Q 001130 545 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQT 624 (1148)
Q Consensus 545 ~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILVwD~~~s~~~~g~k~~g~m~t 624 (1148)
+++..|+++|.+|+++|+|+.|.+ .+ ..|.++|.+|++|||+|+||+ |...+...
T Consensus 33 ~~~~~l~~~I~~Ak~sI~i~~Y~~-------~~------~~i~~aL~~Aa~RGV~VrIll-d~~~~~~~----------- 87 (177)
T PRK13912 33 DALNKLVSLISNARSSIKIAIYSF-------TH------KDIAKALKSAAKRGVKISIIY-DYESNHNN----------- 87 (177)
T ss_pred HHHHHHHHHHHhcccEEEEEEEEE-------ch------HHHHHHHHHHHHCCCEEEEEE-eCccccCc-----------
Confidence 678999999999999999998854 22 579999999999999999996 76543110
Q ss_pred ccHHHHHHh-hcCCcEEEEccCcccccccccccccccccccccceEEEEcCCCCCCCccEEEEECCccCCCCCCCCCCCC
Q 001130 625 HDEETRRVF-KHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHP 703 (1148)
Q Consensus 625 ~~~et~~~l-~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~H~ 703 (1148)
......++ +..++++.......... ......+|.|++|||++ ++++|+.|++...+..
T Consensus 88 -~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~H~K~~viD~~--------~~~iGS~N~t~~s~~~---- 146 (177)
T PRK13912 88 -DQSTIGYLDKYPNIKVCLLKGLKAKN--------GKYYGIMHQKVAIIDDK--------IVVLGSANWSKNAFEN---- 146 (177)
T ss_pred -chhHHHHHHhCCCceEEEecCccccC--------cccccccceeEEEEcCC--------EEEEeCCCCChhHhcc----
Confidence 01111222 23567766543211000 01124689999999996 9999999999865521
Q ss_pred cccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCHH-HHHHHHHHHHHHHhh
Q 001130 704 LFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPA-AYDVLTNFEERWRKA 759 (1148)
Q Consensus 704 l~d~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GPa-a~Dl~~~F~qrWn~~ 759 (1148)
| +++.+.++.|. +.++.+.|.+.|...
T Consensus 147 --------------N---------------~E~~lii~d~~~~~~~~~~F~~~~~~s 174 (177)
T PRK13912 147 --------------N---------------YEVLLITDDTETILKAKEYFQKMLGSC 174 (177)
T ss_pred --------------C---------------CceEEEECCHHHHHHHHHHHHHHHHhc
Confidence 1 35677888884 799999999999864
No 121
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.30 E-value=1.8e-11 Score=142.90 Aligned_cols=141 Identities=18% Similarity=0.231 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHhccceEEEEeeccceeeEEeCCC-CchHHHHHHHHHHhh-hcCCcEEEEEecCCCcccccccccccccc
Q 001130 546 CWYDICNAISQAQRLIYITGWSVWHKVKLVRDAS-PALDCTLGELLRSKS-QEGVRVLLLVWDDPTSRSILGYKMDGVMQ 623 (1148)
Q Consensus 546 ~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~-~~~g~~L~dlL~~kA-~rGVkVrILVwD~~~s~~~~g~k~~g~m~ 623 (1148)
..++++++|.+||++|+|+.+.|.| .++.+. ...+..|.++|++|| +|||+||||+ +..+.... .
T Consensus 217 ~~~~ll~~I~~Ak~~I~I~t~yf~P---~~~~d~~~~~~~~i~~AL~~AAa~RGV~VRILv-~~~~~~~~-------~-- 283 (369)
T PHA03003 217 DADVVLHKIKSAKKSIDLELLSLVP---VIREDDKTTYWPDIYNALIRAAINRGVKVRLLV-GSWKKNDV-------Y-- 283 (369)
T ss_pred CHHHHHHHHHHHhhEEEEEEecccc---EEeeCCCCccHHHHHHHHHHHHHcCCCEEEEEE-ecCCcCCc-------h--
Confidence 3588999999999999999997755 333322 124578999998885 9999999997 65432110 0
Q ss_pred cccHHHHHHhhcCCcE----EEEccCcccccccccccccccccccccceEEEEcCCCCCCCccEEEEECCccCCCCCCCC
Q 001130 624 THDEETRRVFKHSSVK----VLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDN 699 (1148)
Q Consensus 624 t~~~et~~~l~~~gV~----v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt 699 (1148)
.....+.|+..|++ |..+ .+.+|+|++|||++ +|||||.|+...++..
T Consensus 284 --~~~~~~~L~~~G~~~~i~vri~------------------~~~~H~K~~VVD~~--------~a~iGS~N~d~~s~~~ 335 (369)
T PHA03003 284 --SMASVKSLQALCVGNDLSVKVF------------------RIPNNTKLLIVDDE--------FAHITSANFDGTHYLH 335 (369)
T ss_pred --hhhHHHHHHHcCCCCCceEeee------------------cCCCCceEEEEcCC--------EEEEeccccCchhhcc
Confidence 11234456666644 2221 12379999999996 9999999998755431
Q ss_pred CCCCcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCHHHHHHHHHHHHHHHhh
Q 001130 700 PHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKA 759 (1148)
Q Consensus 700 ~~H~l~d~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GPaa~Dl~~~F~qrWn~~ 759 (1148)
..|.++ ..++|++|.++...|.++|+..
T Consensus 336 -------------------------------~~e~~~-~~~~~~~a~~l~~~F~~dW~~~ 363 (369)
T PHA03003 336 -------------------------------HAFVSF-NTIDKELVKELSAIFERDWTSS 363 (369)
T ss_pred -------------------------------CCCeEE-ecCChhHHHHHHHHHHHHhCCc
Confidence 122332 2468999999999999999854
No 122
>PRK13912 nuclease NucT; Provisional
Probab=99.29 E-value=2.8e-11 Score=127.43 Aligned_cols=127 Identities=21% Similarity=0.224 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhhccEEEEEEeEeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCcch
Q 001130 840 SIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAAT 919 (1148)
Q Consensus 840 sI~~Ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p~~~s~ 919 (1148)
.+...++++|++|++.|+|+. |++.. .+++.+|.+|. +|||+|+||++...... ..
T Consensus 33 ~~~~~l~~~I~~Ak~sI~i~~-Y~~~~-----------------~~i~~aL~~Aa--~RGV~VrIlld~~~~~~----~~ 88 (177)
T PRK13912 33 DALNKLVSLISNARSSIKIAI-YSFTH-----------------KDIAKALKSAA--KRGVKISIIYDYESNHN----ND 88 (177)
T ss_pred HHHHHHHHHHHhcccEEEEEE-EEEch-----------------HHHHHHHHHHH--HCCCEEEEEEeCccccC----cc
Confidence 577889999999999999996 65543 25777777764 69999999998753210 00
Q ss_pred hHHHHHHHHhHhhHHHHHHHHHHH-cCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCCcceee
Q 001130 920 QRILFWQHKTMQMMYETIYKALVE-VGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYV 998 (1148)
Q Consensus 920 ~~il~~~~rTm~~~~~si~~~L~~-~Gv~~~~~P~~Yl~f~~L~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~IYV 998 (1148)
.. ....|.+ .+++.... ..+.. . ......++
T Consensus 89 ~~---------------~~~~l~~~~~~~~~~~-------~~~~~----~----------------------~~~~~~~~ 120 (177)
T PRK13912 89 QS---------------TIGYLDKYPNIKVCLL-------KGLKA----K----------------------NGKYYGIM 120 (177)
T ss_pred hh---------------HHHHHHhCCCceEEEe-------cCccc----c----------------------Cccccccc
Confidence 00 0111111 13332210 00000 0 00012368
Q ss_pred eeEEEEEeCeEEEEcccccccccCCCCCCcceEEEEeCcchh
Q 001130 999 HSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1040 (1148)
Q Consensus 999 HSKlmIVDD~~viIGSANLN~RSm~G~~DsEiav~i~dp~~~ 1040 (1148)
|+|+||||++++++||+||+.+|+. .|.|+++++.|++..
T Consensus 121 H~K~~viD~~~~~iGS~N~t~~s~~--~N~E~~lii~d~~~~ 160 (177)
T PRK13912 121 HQKVAIIDDKIVVLGSANWSKNAFE--NNYEVLLITDDTETI 160 (177)
T ss_pred ceeEEEEcCCEEEEeCCCCChhHhc--cCCceEEEECCHHHH
Confidence 9999999999999999999999998 899999999998753
No 123
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.28 E-value=1.7e-11 Score=118.47 Aligned_cols=94 Identities=29% Similarity=0.498 Sum_probs=76.2
Q ss_pred EEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE-----EEEeeeeeeCCCCCeeceEEEEEecC-----
Q 001130 351 IWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA-----VVGRTFVISNSEDPVWQQHFYVPVAH----- 420 (1148)
Q Consensus 351 VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~-----~~~RTkvi~nt~NPvWNE~F~f~v~~----- 420 (1148)
+-.++|++|+.+|..+. +||||+|.+.+. ..+||++++++.||+|| +|.|++..
T Consensus 4 ~~~i~a~~L~~~d~~~~---------------~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~ 67 (110)
T cd04047 4 ELQFSGKKLDKKDFFGK---------------SDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGD 67 (110)
T ss_pred EEEEEeCCCCCCCCCCC---------------CCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCC
Confidence 44679999999998776 899999998543 35799999999999999 79888642
Q ss_pred CCceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeee
Q 001130 421 SAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1148)
Q Consensus 421 ~~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL 462 (1148)
....|.|+|||+|.. ++++||++.+++++|..+. ..++.+
T Consensus 68 ~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~~~~--~~~~~~ 108 (110)
T cd04047 68 YDRPIKIEVYDYDSSGKHDLIGEFETTLDELLKSS--PLEFEL 108 (110)
T ss_pred cCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHhcCC--CceEEe
Confidence 257899999999986 5899999999999998443 234444
No 124
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.24 E-value=2.7e-11 Score=109.68 Aligned_cols=81 Identities=41% Similarity=0.642 Sum_probs=69.5
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE--EEEeeeeeeCCCCCeeceEEEEEecCC-CceE
Q 001130 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA--VVGRTFVISNSEDPVWQQHFYVPVAHS-AAEV 425 (1148)
Q Consensus 349 L~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~--~~~RTkvi~nt~NPvWNE~F~f~v~~~-~~~L 425 (1148)
|+|+|++|++|+..+..+. +||||+|.+.+. ...+|+++.++.+|.|||+|.|.+... .+.|
T Consensus 1 L~v~I~~a~~L~~~~~~~~---------------~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l 65 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGK---------------PDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSL 65 (85)
T ss_dssp EEEEEEEEESSSSSSTTSS---------------BEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEE
T ss_pred CEEEEEEEECCCCcccCCc---------------ccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccce
Confidence 7899999999997775554 899999999872 225999999999999999999996544 4679
Q ss_pred EEEEEEccCCC-CcceeeEE
Q 001130 426 HFFVKDSDVVG-SELIGTVA 444 (1148)
Q Consensus 426 ~~~V~D~D~~~-ddfIG~v~ 444 (1148)
.|+|||++..+ +++||+++
T Consensus 66 ~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 66 SFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp EEEEEEETSSSSEEEEEEEE
T ss_pred EEEEEECCCCCCCCEEEEEC
Confidence 99999999876 89999985
No 125
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=1.7e-11 Score=142.40 Aligned_cols=116 Identities=26% Similarity=0.401 Sum_probs=97.3
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCCceEEE
Q 001130 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 427 (1148)
Q Consensus 348 tL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~~~L~~ 427 (1148)
.++++|++|+||...|..|+ +||||++.+++.+. ||++|..++||+|||.|+|.|.+....|++
T Consensus 296 kitltvlcaqgl~akdktg~---------------sdpyvt~qv~ktkr-rtrti~~~lnpvw~ekfhfechnstdrikv 359 (1283)
T KOG1011|consen 296 KITLTVLCAQGLIAKDKTGK---------------SDPYVTAQVGKTKR-RTRTIHQELNPVWNEKFHFECHNSTDRIKV 359 (1283)
T ss_pred eeEEeeeecccceecccCCC---------------CCCcEEEeecccch-hhHhhhhccchhhhhheeeeecCCCceeEE
Confidence 68999999999999988877 99999999999885 999999999999999999999998899999
Q ss_pred EEEEccC------------CCCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEEE
Q 001130 428 FVKDSDV------------VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1148)
Q Consensus 428 ~V~D~D~------------~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f 482 (1148)
.|||.|. ..|||+|++.|.+..|. | ..+-||.|..+..|.. ..|.|+|.|..
T Consensus 360 rvwded~dlksklrqkl~resddflgqtvievrtls-g-emdvwynlekrtdksa-vsgairlhisv 423 (1283)
T KOG1011|consen 360 RVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLS-G-EMDVWYNLEKRTDKSA-VSGAIRLHISV 423 (1283)
T ss_pred EEecCcccHHHHHHHHhhhcccccccceeEEEEecc-c-chhhhcchhhccchhh-ccceEEEEEEE
Confidence 9999884 23899999999998876 4 3678999965544432 33566666553
No 126
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.22 E-value=2.1e-11 Score=144.68 Aligned_cols=126 Identities=24% Similarity=0.302 Sum_probs=110.1
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCCceEEE
Q 001130 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 427 (1148)
Q Consensus 348 tL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~~~L~~ 427 (1148)
.|+|+|.+|+||+..+..|. .||||+|.++.+.+.||.++.+++.|.|.|+|+|.+...-..|.|
T Consensus 6 sl~vki~E~knL~~~~~~g~---------------~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~f 70 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGM---------------RDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSF 70 (800)
T ss_pred ceeEEEeecccCCCCCCCCC---------------cCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEE
Confidence 48999999999999887776 899999999999999999999999999999999999877789999
Q ss_pred EEEEccCCCCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEEEecccccc
Q 001130 428 FVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLS 489 (1148)
Q Consensus 428 ~V~D~D~~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~p~~~~~ 489 (1148)
-|||.|...|+.||++.|.-++|..-...+.||.|..-+-.. .-+|+|+|.+++.+.....
T Consensus 71 Yv~D~d~~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~ds-EVQG~v~l~l~~~e~~~~~ 131 (800)
T KOG2059|consen 71 YVWDRDLKRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDS-EVQGKVHLELALTEAIQSS 131 (800)
T ss_pred EEeccccccccccceeeeeHHHHhhCCCCccceeccccCCCh-hhceeEEEEEEeccccCCC
Confidence 999999888999999999999998766788999995332221 2457999999999887754
No 127
>PRK12452 cardiolipin synthetase; Reviewed
Probab=99.20 E-value=6.1e-11 Score=143.74 Aligned_cols=152 Identities=16% Similarity=0.207 Sum_probs=111.9
Q ss_pred CeeEecccccCCCCCCCceeecCCCccchhHHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHHhh
Q 001130 515 GKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKS 594 (1148)
Q Consensus 515 n~V~ly~dg~~~~~~~p~i~l~~g~~y~~~~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA 594 (1148)
+.++++.+|.. ......+..++++|.+||++|+|++..| +.+ ..+.++|+.||
T Consensus 329 ~~~q~~~sgp~---------------~~~~~i~~~~l~~I~~A~~~I~I~tpYf------~pd------~~l~~aL~~Aa 381 (509)
T PRK12452 329 GAVQIVASGPS---------------SDDKSIRNTLLAVMGSAKKSIWIATPYF------IPD------QETLTLLRLSA 381 (509)
T ss_pred eEEEEEeCCCC---------------chhHHHHHHHHHHHHHhhhEEEEECCcc------CCC------HHHHHHHHHHH
Confidence 46888877741 1123678999999999999999998533 222 57899999999
Q ss_pred hcCCcEEEEEecCCCcccccccccccccccccHHHHHHhhcCCcEEEEccCcccccccccccccccccccccceEEEEcC
Q 001130 595 QEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDA 674 (1148)
Q Consensus 595 ~rGVkVrILVwD~~~s~~~~g~k~~g~m~t~~~et~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~ 674 (1148)
+|||+||||+ +....... .........+.|...||++..+.+ ...|.|++|||+
T Consensus 382 ~rGV~Vrii~-p~~~D~~~--------~~~a~~~~~~~L~~aGv~I~~y~~-----------------~~lHaK~~ivD~ 435 (509)
T PRK12452 382 ISGIDVRILY-PGKSDSII--------SDQASQSYFTPLLKAGASIYSYKD-----------------GFMHAKIVLVDD 435 (509)
T ss_pred HcCCEEEEEc-CCCCChHH--------HHHHHHHHHHHHHHcCCEEEEecC-----------------CCeeeeEEEECC
Confidence 9999999997 54321100 000012234456678999977643 137999999999
Q ss_pred CCCCCCccEEEEECCccCCCCCCCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCHHHHHHHHHHHH
Q 001130 675 DAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEE 754 (1148)
Q Consensus 675 ~~~~~~r~~vAFVGGiDL~dgRwDt~~H~l~d~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GPaa~Dl~~~F~q 754 (1148)
+ +|+||+.|+....+ +..|.+..+..+++.|.++...|.+
T Consensus 436 ~--------~a~vGS~Nld~RS~--------------------------------~~n~E~~~~i~~~~~~~~l~~~f~~ 475 (509)
T PRK12452 436 K--------IATIGTANMDVRSF--------------------------------ELNYEIISVLYESETVHDIKRDFED 475 (509)
T ss_pred C--------EEEEeCcccCHhHh--------------------------------hhhhhccEEEECHHHHHHHHHHHHH
Confidence 6 99999999977533 1356688888999999999999999
Q ss_pred HHHhh
Q 001130 755 RWRKA 759 (1148)
Q Consensus 755 rWn~~ 759 (1148)
+|...
T Consensus 476 d~~~s 480 (509)
T PRK12452 476 DFKHS 480 (509)
T ss_pred HHHhC
Confidence 99865
No 128
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.17 E-value=1e-10 Score=115.05 Aligned_cols=114 Identities=25% Similarity=0.377 Sum_probs=75.1
Q ss_pred HHHHHHhhccEEEEEEeEeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCcchhHHHH
Q 001130 845 YVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILF 924 (1148)
Q Consensus 845 yl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p~~~s~~~il~ 924 (1148)
++++|++|++.|+|..+||... .++.+|+.+ +.+|++|+|++...... .....
T Consensus 1 l~~~i~~A~~~i~i~~~~~~~~------------------~i~~~l~~~--~~~gv~v~ii~~~~~~~-------~~~~~ 53 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYITDP------------------DIIKALLDA--AKRGVKVRIIVDSNQDD-------SEAIN 53 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS-SC------------------HHHHHHHHH--HHTT-EEEEEEECGGGH-------HCCCS
T ss_pred CHHHHhccCCEEEEEEEecCcH------------------HHHHHHHHH--HHCCCeEEEEECCCccc-------cchhh
Confidence 4689999999999999999432 355556553 47899999999873210 00000
Q ss_pred HHHHhHhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCCcceeeeeEEEE
Q 001130 925 WQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMI 1004 (1148)
Q Consensus 925 ~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~L~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~IYVHSKlmI 1004 (1148)
......+.+.+.+.|++++ .++|+|++|
T Consensus 54 ------~~~~~~~~~~~~~~~i~v~----------------------------------------------~~~H~K~~i 81 (126)
T PF13091_consen 54 ------LASLKELRELLKNAGIEVR----------------------------------------------NRLHAKFYI 81 (126)
T ss_dssp ------HHHHHHHHHHHHHTTHCEE----------------------------------------------S-B--EEEE
T ss_pred ------hHHHHHHHhhhccceEEEe----------------------------------------------cCCCcceEE
Confidence 0011123344466776543 158999999
Q ss_pred EeCeEEEEcccccccccCCCCCCcceEEEEeCcch
Q 001130 1005 VDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEY 1039 (1148)
Q Consensus 1005 VDD~~viIGSANLN~RSm~G~~DsEiav~i~dp~~ 1039 (1148)
+||++++|||+||+.+|+. +|.|+++.+.+++.
T Consensus 82 ~d~~~~iiGS~N~t~~~~~--~n~E~~~~~~~~~~ 114 (126)
T PF13091_consen 82 IDDKVAIIGSANLTSSSFR--RNYELGVIIDDPEL 114 (126)
T ss_dssp ETTTEEEEES--CSCCCSC--TSEEEEEEEECHHH
T ss_pred ecCccEEEcCCCCCcchhc--CCcceEEEEECHHH
Confidence 9999999999999999997 89999999999863
No 129
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=99.16 E-value=1.6e-08 Score=115.81 Aligned_cols=150 Identities=15% Similarity=0.059 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHhccceEEEEeeccce-eeEE-eCCCCchHHHHHHHHHHhhhcCCcEEEEEecCCCcccccccccccccc
Q 001130 546 CWYDICNAISQAQRLIYITGWSVWHK-VKLV-RDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQ 623 (1148)
Q Consensus 546 ~f~al~eAI~~Ar~sI~I~~W~~~p~-i~L~-rd~~~~~g~~L~dlL~~kA~rGVkVrILVwD~~~s~~~~g~k~~g~m~ 623 (1148)
++++.++.|++|+++|+|..|-.+=. ..+- .+.....|..+..+|.+++.+||.|||..--..+.. .
T Consensus 73 T~eaW~~Ll~sA~~eldIas~ywsL~~~d~~~~dsSt~~G~~vy~~L~~~~~~gIsiriA~~~p~~~~--~--------- 141 (456)
T KOG3603|consen 73 TKEAWLELLSTAQEELDIASFYWSLTGKDTGVVDSSTQYGEQVYNTLLALAKSGVKIRIAQSYPSGGP--P--------- 141 (456)
T ss_pred HHHHHHHHhhccceEEEEEEEeeccccceeccCCCcchHHHHHHHHHHHhccCCeEEEEEeecCCCCC--C---------
Confidence 46888999999999999987532211 1111 111223588999999999999999999872222111 0
Q ss_pred cccHHHHHHhhcCC-cEEEEccCcccccccccccccccccccccceEEEEcCCCCCCCccEEEEECCccCCCCCCCCCCC
Q 001130 624 THDEETRRVFKHSS-VKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHH 702 (1148)
Q Consensus 624 t~~~et~~~l~~~g-V~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~H 702 (1148)
+.....|+..| ++++-.... .|. + -.-.|-|..|||++ --|+||.|+.+. =-|+
T Consensus 142 ---~~d~~~Le~~Gaa~vr~id~~-----~l~-----g-~GvlHtKf~vvD~k--------hfylGSaNfDWr-SlTq-- 196 (456)
T KOG3603|consen 142 ---NADLQVLESLGLAQVRSIDMN-----RLT-----G-GGVLHTKFWVVDIK--------HFYLGSANFDWR-SLTQ-- 196 (456)
T ss_pred ---cccHHHHHhCCCceEEeeccc-----ccc-----c-CceEEEEEEEEecc--------eEEEeccccchh-hccc--
Confidence 11223445555 666543211 111 0 23579999999996 889999999874 2121
Q ss_pred CcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEc--CHHHHHHHHHHHHHHHhhcC
Q 001130 703 PLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKID--GPAAYDVLTNFEERWRKASK 761 (1148)
Q Consensus 703 ~l~d~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~--GPaa~Dl~~~F~qrWn~~t~ 761 (1148)
--.+++.++ --.|.||.+.|++.|.....
T Consensus 197 ------------------------------vkElGv~v~NCpclakDL~kiFe~yW~lg~~ 227 (456)
T KOG3603|consen 197 ------------------------------VKELGVVVRNCPCLAKDLKKIFERYWYLGNA 227 (456)
T ss_pred ------------------------------eeEeeeEEecChhHHHHHHHHHHHHhcCCCC
Confidence 013333332 24799999999999996543
No 130
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.15 E-value=2.3e-10 Score=104.94 Aligned_cols=99 Identities=33% Similarity=0.571 Sum_probs=83.0
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecC-CCceEEE
Q 001130 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAH-SAAEVHF 427 (1148)
Q Consensus 349 L~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~-~~~~L~~ 427 (1148)
|.|.|++|++|........ .||||+|.+.+...++|+++.++.||.|||.|.|.+.. ....|.|
T Consensus 1 l~v~i~~~~~l~~~~~~~~---------------~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i 65 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGK---------------SDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTV 65 (102)
T ss_pred CEEEEEeeeCCCCcCCCCC---------------CCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEE
Confidence 5799999999986533332 89999999998455699999999999999999999987 5678999
Q ss_pred EEEEccCCC-CcceeeEEEeceeec-cCCcccceeee
Q 001130 428 FVKDSDVVG-SELIGTVAIPVEQIY-SGGKVEGTYPV 462 (1148)
Q Consensus 428 ~V~D~D~~~-ddfIG~v~IpL~eL~-~G~~~d~W~pL 462 (1148)
+|++.+..+ +++||++.+++.++. .+.....|++|
T Consensus 66 ~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 66 EVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEecCCCCCCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 999988754 789999999999998 55666678765
No 131
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.14 E-value=2.8e-10 Score=105.13 Aligned_cols=93 Identities=39% Similarity=0.654 Sum_probs=79.6
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE--EEEeeeeeeCCCCCeeceEEEEEecCC-Cce
Q 001130 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA--VVGRTFVISNSEDPVWQQHFYVPVAHS-AAE 424 (1148)
Q Consensus 348 tL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~--~~~RTkvi~nt~NPvWNE~F~f~v~~~-~~~ 424 (1148)
+|.|+|++|++|...+..+. .+|||+|.+.+. ..++|+++.++.||.|||+|.|.+... ...
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~---------------~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~ 65 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGK---------------SDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAE 65 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCC---------------CCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCE
Confidence 37899999999986554332 799999999876 457999999999999999999999887 789
Q ss_pred EEEEEEEccCCC-CcceeeEEEeceeeccCCc
Q 001130 425 VHFFVKDSDVVG-SELIGTVAIPVEQIYSGGK 455 (1148)
Q Consensus 425 L~~~V~D~D~~~-ddfIG~v~IpL~eL~~G~~ 455 (1148)
|.|+|||.+..+ +.+||.+.+++.++..+..
T Consensus 66 l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 66 LEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred EEEEEEecCCccCCceeEEEEEEHHHcccCcc
Confidence 999999988754 8899999999999887653
No 132
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.08 E-value=4.3e-10 Score=140.16 Aligned_cols=132 Identities=23% Similarity=0.388 Sum_probs=107.8
Q ss_pred ceEEEEEEEEeeCCCCCC--CCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCCc
Q 001130 346 HGNLDIWIYSAKNLPNMD--MFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAA 423 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D--~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~~ 423 (1148)
-|+|.|+|.+|++|...| ..+ +.|||+++...+...+||++++++.||+|||+|++.+....+
T Consensus 435 IGVv~vkI~sa~~lk~~d~~i~~---------------~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d 499 (1227)
T COG5038 435 IGVVEVKIKSAEGLKKSDSTING---------------TVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTD 499 (1227)
T ss_pred eEEEEEEEeeccCcccccccccC---------------CCCceEEEEeccccCCccceeeccCCccccceEEEEecccCC
Confidence 378999999999999776 233 389999999999988999999999999999999999998889
Q ss_pred eEEEEEEEccC-CCCcceeeEEEeceeeccCCcc-cceeeeccCCCCCCCCCCcEEEEEEEecccccccccCCCC
Q 001130 424 EVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKV-EGTYPVLNGSGKPCKPGATLTLSIQYTPMERLSFYHRGVG 496 (1148)
Q Consensus 424 ~L~~~V~D~D~-~~ddfIG~v~IpL~eL~~G~~~-d~W~pL~~~~Gk~~~~~g~L~L~l~f~p~~~~~~y~~Gv~ 496 (1148)
.|.|+|||.+. ..|+++|.+.|+|..|...... +..+.++ .+++. .|.|+..++|+|..++..-..|..
T Consensus 500 ~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~-~~~k~---vGrL~yDl~ffp~~e~k~~~~~s~ 570 (1227)
T COG5038 500 PLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL-RNTKN---VGRLTYDLRFFPVIEDKKELKGSV 570 (1227)
T ss_pred ceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeee-ccCcc---ceEEEEeeeeecccCCcccccccc
Confidence 99999999554 6789999999999988854333 3356664 45553 369999999999988765444444
No 133
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.04 E-value=1.2e-09 Score=107.30 Aligned_cols=125 Identities=22% Similarity=0.388 Sum_probs=84.1
Q ss_pred HHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHHhhhcCCcEEEEEecCCCcccccccccccccccccHHH
Q 001130 550 ICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEET 629 (1148)
Q Consensus 550 l~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILVwD~~~s~~~~g~k~~g~m~t~~~et 629 (1148)
|.++|++|+++|+|+.+.|. ...|.++|..++++||+|+|++.+........ -.......
T Consensus 1 l~~~i~~A~~~i~i~~~~~~-------------~~~i~~~l~~~~~~gv~v~ii~~~~~~~~~~~-------~~~~~~~~ 60 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYIT-------------DPDIIKALLDAAKRGVKVRIIVDSNQDDSEAI-------NLASLKEL 60 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS--------------SCHHHHHHHHHHHTT-EEEEEEECGGGHHCCC-------SHHHHHHH
T ss_pred CHHHHhccCCEEEEEEEecC-------------cHHHHHHHHHHHHCCCeEEEEECCCccccchh-------hhHHHHHH
Confidence 57899999999999998651 13578888889999999999983322100000 00011233
Q ss_pred HHHhhcCCcEEEEccCcccccccccccccccccccccceEEEEcCCCCCCCccEEEEECCccCCCCCCCCCCCCcccccc
Q 001130 630 RRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQ 709 (1148)
Q Consensus 630 ~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~H~l~d~l~ 709 (1148)
.+.++..|+++. .+.|.|++|||++ ++++|+.|++...|.
T Consensus 61 ~~~~~~~~i~v~---------------------~~~H~K~~i~d~~--------~~iiGS~N~t~~~~~----------- 100 (126)
T PF13091_consen 61 RELLKNAGIEVR---------------------NRLHAKFYIIDDK--------VAIIGSANLTSSSFR----------- 100 (126)
T ss_dssp HHHHHHTTHCEE---------------------S-B--EEEEETTT--------EEEEES--CSCCCSC-----------
T ss_pred HhhhccceEEEe---------------------cCCCcceEEecCc--------cEEEcCCCCCcchhc-----------
Confidence 444566777765 1489999999986 999999999987652
Q ss_pred cccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCHH-HHHHHHHHHHHH
Q 001130 710 TLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPA-AYDVLTNFEERW 756 (1148)
Q Consensus 710 ~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GPa-a~Dl~~~F~qrW 756 (1148)
..++..+.++++. +.++.+.|.+.|
T Consensus 101 ----------------------~n~E~~~~~~~~~~~~~~~~~F~~~W 126 (126)
T PF13091_consen 101 ----------------------RNYELGVIIDDPELVKELIREFDQMW 126 (126)
T ss_dssp ----------------------TSEEEEEEEECHHHHHHHHHHTHH-H
T ss_pred ----------------------CCcceEEEEECHHHHHHHHHHHhccC
Confidence 2368999999996 999999999889
No 134
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.03 E-value=5.6e-10 Score=139.16 Aligned_cols=129 Identities=26% Similarity=0.411 Sum_probs=102.7
Q ss_pred CcceeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEe
Q 001130 339 SLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPV 418 (1148)
Q Consensus 339 ~~~~~Ll~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v 418 (1148)
+-.+.--.|.|+|.+..|.||+..|.++. +||||++.+.++.+.||+++++|+||+|||+|.+++
T Consensus 1032 ~~emv~nsG~l~I~~~~~~nl~~~d~ng~---------------sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v 1096 (1227)
T COG5038 1032 PVEMVENSGYLTIMLRSGENLPSSDENGY---------------SDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEV 1096 (1227)
T ss_pred cceeecccCcEEEEEeccCCCcccccCCC---------------CCceEEEEecceecccccchhccCCCCccccceEee
Confidence 33445558999999999999999998887 899999999999888999999999999999999998
Q ss_pred cCC-CceEEEEEEEccC-CCCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEEEec
Q 001130 419 AHS-AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1148)
Q Consensus 419 ~~~-~~~L~~~V~D~D~-~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~p 484 (1148)
... ...++|.|+|||. .+++.||++.|+|+.|..|......++|. ..+ ....+|.++....|.+
T Consensus 1097 ~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~ld-gk~-~~~~~g~~~~~~~~r~ 1162 (1227)
T COG5038 1097 LNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLD-GKT-FIVLDGTLHPGFNFRS 1162 (1227)
T ss_pred eccccceEEEEEeecccCCCccccccccccHhhcCcCCccceeeecc-Ccc-eEecccEeecceecch
Confidence 744 5789999999998 56899999999999999886655555553 222 1223345544444443
No 135
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.02 E-value=3.6e-11 Score=141.85 Aligned_cols=150 Identities=21% Similarity=0.329 Sum_probs=117.3
Q ss_pred CcccCCCCCCCCCcccccCCCCCcceeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC----
Q 001130 317 LVYAHSDSFNGQNMQIVPSTKGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA---- 392 (1148)
Q Consensus 317 ~p~~~~~~~~~~g~q~Va~q~~~~~~~Ll~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~---- 392 (1148)
+.|.-....|..++..|. |-...++. |.|.+.+|+||-++|.+|. +|||+++.+-
T Consensus 90 ~~fg~~~~eh~~~~e~v~-~~k~P~~~-----l~is~~~ak~l~akd~ngf---------------SdP~~m~g~~p~~~ 148 (1103)
T KOG1328|consen 90 NAFGGDAAEHNALMEKVK-QNKPPSVL-----LNISLLEAKDLIAKDVNGF---------------SDPFAMMGVVPGTR 148 (1103)
T ss_pred HHhCCCHhHhhhcccccc-CCCCCcHH-----HHHHHHHhcCccccCCCCC---------------CChhhhhccccccc
Confidence 345555577888888886 32223332 7899999999999999887 8999999881
Q ss_pred ----------------------C----EEEEeeeeeeCCCCCeeceEEEEEecCCC-ceEEEEEEEccCC----------
Q 001130 393 ----------------------G----AVVGRTFVISNSEDPVWQQHFYVPVAHSA-AEVHFFVKDSDVV---------- 435 (1148)
Q Consensus 393 ----------------------g----~~~~RTkvi~nt~NPvWNE~F~f~v~~~~-~~L~~~V~D~D~~---------- 435 (1148)
| +-++-|.|+++|+||+|+|+|.|.+.+.. ..+++.+||+|..
T Consensus 149 ~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~L 228 (1103)
T KOG1328|consen 149 KENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSL 228 (1103)
T ss_pred cccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHH
Confidence 1 12346888999999999999999998764 7899999998841
Q ss_pred ---------------------------CCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEEEeccccc
Q 001130 436 ---------------------------GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERL 488 (1148)
Q Consensus 436 ---------------------------~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~p~~~~ 488 (1148)
.|||+|++.|||.+|... ..++||.|..++.+. +-.|.++|+++....+..
T Consensus 229 NeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~~-Gld~WFkLepRS~~S-~VqG~~~LklwLsT~e~~ 306 (1103)
T KOG1328|consen 229 NEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPPD-GLDQWFKLEPRSDKS-KVQGQVKLKLWLSTKEEG 306 (1103)
T ss_pred hhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCcc-hHHHHhccCcccccc-cccceEEEEEEEeeeccc
Confidence 178999999999999964 478999998766654 456799999999877665
Q ss_pred c
Q 001130 489 S 489 (1148)
Q Consensus 489 ~ 489 (1148)
.
T Consensus 307 ~ 307 (1103)
T KOG1328|consen 307 R 307 (1103)
T ss_pred c
Confidence 4
No 136
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=2.2e-09 Score=127.24 Aligned_cols=109 Identities=28% Similarity=0.455 Sum_probs=89.0
Q ss_pred ceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEeeeeeeCCCCCeeceEEEEEecCC
Q 001130 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1148)
Q Consensus 346 ~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~RTkvi~nt~NPvWNE~F~f~v~~~ 421 (1148)
+|.|+|.|++|++|+.+|..+. +||||++.+-. ...+||.+++++.||+|||+|.|.+...
T Consensus 297 ~g~ltv~v~kar~L~~~~~~~~---------------~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~ 361 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSMDVGGL---------------SDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPE 361 (421)
T ss_pred CCeEEEEEEEecCCCcccCCCC---------------CCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHH
Confidence 5899999999999999988776 89999999832 2335999999999999999999987533
Q ss_pred ---CceEEEEEEEccCCC-CcceeeEEEeceeeccCCcccceeeeccCCCCCCC
Q 001130 422 ---AAEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCK 471 (1148)
Q Consensus 422 ---~~~L~~~V~D~D~~~-ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~ 471 (1148)
...|.|+|||+|.++ +++||.+.+.... .|.....|..+++..+++..
T Consensus 362 ~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~p~~pv~ 413 (421)
T KOG1028|consen 362 QLAEVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEMLNSPRKPVA 413 (421)
T ss_pred HhheeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHHhCccCcee
Confidence 257899999999855 7799998887765 55567789999877776543
No 137
>PRK11263 cardiolipin synthase 2; Provisional
Probab=98.86 E-value=1.9e-08 Score=119.06 Aligned_cols=133 Identities=15% Similarity=0.286 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhhccEEEEEEeEeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCcch
Q 001130 840 SIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAAT 919 (1148)
Q Consensus 840 sI~~Ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p~~~s~ 919 (1148)
++..+++++|++||++|+||+.+|..+. ++.+++.+|.+| +++||+|+|+++.... . .
T Consensus 18 e~~~~l~~~I~~Ak~~I~i~~yi~~~d~--------------~g~~l~~aL~~a--a~rGV~Vril~D~~gs--~----~ 75 (411)
T PRK11263 18 QYYPRVFEAIAAAQEEILLETFILFEDK--------------VGKQLHAALLAA--AQRGVKVEVLVDGYGS--P----D 75 (411)
T ss_pred HHHHHHHHHHHHhCCEEEEEEEEEecCc--------------hHHHHHHHHHHH--HHCCCEEEEEEECCCC--C----C
Confidence 6889999999999999999998887653 245677777766 4699999999987421 0 0
Q ss_pred hHHHHHHHHhHhhHHHHHHHHHHHcCCceee-cccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCCcceee
Q 001130 920 QRILFWQHKTMQMMYETIYKALVEVGLEGAF-SPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYV 998 (1148)
Q Consensus 920 ~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~-~P~~Yl~f~~L~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~IYV 998 (1148)
+...+.+.|.++|+++++ +|.. .+.+.+ - + .-...
T Consensus 76 -------------~~~~~~~~L~~aGv~v~~~~p~~--~~~~~~--~----------------~-----------~~~R~ 111 (411)
T PRK11263 76 -------------LSDEFVNELTAAGVRFRYFDPRP--RLLGMR--T----------------N-----------LFRRM 111 (411)
T ss_pred -------------CCHHHHHHHHHCCeEEEEeCCcc--cccccc--c----------------c-----------cccCC
Confidence 012467889999998853 3321 000000 0 0 00147
Q ss_pred eeEEEEEeCeEEEEcccccccccCC--CC-CCcceEEEEeCcc
Q 001130 999 HSKGMIVDDEYVILGSANINQRSME--GT-RDTEIAMGAYQPE 1038 (1148)
Q Consensus 999 HSKlmIVDD~~viIGSANLN~RSm~--G~-~DsEiav~i~dp~ 1038 (1148)
|.|++|||+++++|||.||.+.-+. |. .-.++++.++.|.
T Consensus 112 HrKiiVIDg~~a~vGg~N~~~~~~~~~g~~~w~D~~v~i~Gp~ 154 (411)
T PRK11263 112 HRKIVVIDGRIAFVGGINYSADHLSDYGPEAKQDYAVEVEGPV 154 (411)
T ss_pred cceEEEEcCCEEEEcCeEchHhhccccCCCCceEEEEEEECHH
Confidence 9999999999999999999764442 21 1367788888875
No 138
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.86 E-value=1.1e-08 Score=102.66 Aligned_cols=93 Identities=19% Similarity=0.241 Sum_probs=75.8
Q ss_pred EEEEEEEeeCCCCCCC--CCccccccccccCCCCCCCCcEEEEEECC--EEEEeeeeeeCCCC--CeeceEEEEEecCC-
Q 001130 349 LDIWIYSAKNLPNMDM--FHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSED--PVWQQHFYVPVAHS- 421 (1148)
Q Consensus 349 L~VtV~eAk~L~~~D~--~g~~~~~~~~k~~~~~~~sDPYV~V~l~g--~~~~RTkvi~nt~N--PvWNE~F~f~v~~~- 421 (1148)
|+|.|.+|++++..+. .|. ..+||||++.+.+ ...++|.|..+++| |+||+.|.|++..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~-------------~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~ 68 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGE-------------KMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLP 68 (133)
T ss_pred EEEEEEECcCCcccccccCCc-------------cccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCC
Confidence 8999999999765443 332 1289999999987 34469999999999 99999999987551
Q ss_pred -----------------------CceEEEEEEEccC-CCCcceeeEEEeceeeccCC
Q 001130 422 -----------------------AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGG 454 (1148)
Q Consensus 422 -----------------------~~~L~~~V~D~D~-~~ddfIG~v~IpL~eL~~G~ 454 (1148)
...|.|+|||+|. ..||+||.+.|++..+..+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 69 AEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ccceeEEEeeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 2578999999998 56999999999999888664
No 139
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=98.85 E-value=1.5e-08 Score=122.65 Aligned_cols=136 Identities=21% Similarity=0.231 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHHhhhcCCcEEEEEecCCCccccccccccccccc
Q 001130 545 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQT 624 (1148)
Q Consensus 545 ~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILVwD~~~s~~~~g~k~~g~m~t 624 (1148)
.....+.++|.+||++|+|++-. ++. ...+.++|+.||+|||+|+||+ +........ ..
T Consensus 318 ~~~~~~~~~I~~A~~~I~I~tpY------fip------~~~i~~aL~~Aa~rGV~Vril~-p~~~d~~~~--------~~ 376 (483)
T PRK01642 318 TIHQFLLTAIYSARERLWITTPY------FVP------DEDLLAALKTAALRGVDVRIII-PSKNDSLLV--------FW 376 (483)
T ss_pred HHHHHHHHHHHHhccEEEEEcCC------cCC------CHHHHHHHHHHHHcCCEEEEEe-CCCCCcHHH--------HH
Confidence 45778999999999999998732 222 2579999999999999999997 443211100 00
Q ss_pred ccHHHHHHhhcCCcEEEEccCcccccccccccccccccccccceEEEEcCCCCCCCccEEEEECCccCCCCCCCCCCCCc
Q 001130 625 HDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPL 704 (1148)
Q Consensus 625 ~~~et~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~H~l 704 (1148)
......+.+...||++..+.. ...|.|++|||++ +++||+.|+...-|.
T Consensus 377 ~~~~~~~~L~~~Gv~I~~y~~-----------------~~~HaK~~ivD~~--------~~~vGS~N~d~rS~~------ 425 (483)
T PRK01642 377 ASRAFFTELLEAGVKIYRYEG-----------------GLLHTKSVLVDDE--------LALVGTVNLDMRSFW------ 425 (483)
T ss_pred HHHHHHHHHHHcCCEEEEeCC-----------------CceEeEEEEECCC--------EEEeeCCcCCHhHHh------
Confidence 011233445678999876532 1379999999996 999999999664331
Q ss_pred ccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCH-HHHHHHHHHHHHHHhh
Q 001130 705 FRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGP-AAYDVLTNFEERWRKA 759 (1148)
Q Consensus 705 ~d~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GP-aa~Dl~~~F~qrWn~~ 759 (1148)
.| +++.+.|.++ .+.++.+.|.++|...
T Consensus 426 ------------~N---------------~E~~~~i~d~~~~~~l~~~f~~d~~~s 454 (483)
T PRK01642 426 ------------LN---------------FEITLVIDDTGFAADLAAMQEDYFARS 454 (483)
T ss_pred ------------hh---------------hcceEEEECHHHHHHHHHHHHHHHHhC
Confidence 01 3678888887 5899999999999864
No 140
>PRK05443 polyphosphate kinase; Provisional
Probab=98.80 E-value=2.5e-08 Score=123.99 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=92.1
Q ss_pred HHHHHHHHhhcc-----EEEEEEeEeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCc
Q 001130 843 TAYVKAIRSAQH-----FIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGA 917 (1148)
Q Consensus 843 ~Ayl~aI~~Ak~-----fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p~~~ 917 (1148)
+..++.|++|.+ .|.|+-..+..++ .|+.+|.+| +++|++|.|+++..+-
T Consensus 351 ~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~s-----------------~iv~aL~~A--a~~Gk~V~vlve~kar------ 405 (691)
T PRK05443 351 DPVVEFLRQAAADPDVLAIKQTLYRTSKDS-----------------PIVDALIEA--AENGKQVTVLVELKAR------ 405 (691)
T ss_pred hHHHHHHHHhccCCCeeEEEEEEEEecCCH-----------------HHHHHHHHH--HHcCCEEEEEEccCcc------
Confidence 457889999999 8999765554432 567777776 4789999999998541
Q ss_pred chhHHHHHHHHhHhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCCccee
Q 001130 918 ATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIY 997 (1148)
Q Consensus 918 s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~L~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~IY 997 (1148)
+..|+. ..++++|.++|+++.|. | ....
T Consensus 406 ----fde~~n-------~~~~~~L~~aGv~V~y~---~--------------------------------------~~~k 433 (691)
T PRK05443 406 ----FDEEAN-------IRWARRLEEAGVHVVYG---V--------------------------------------VGLK 433 (691)
T ss_pred ----ccHHHH-------HHHHHHHHHcCCEEEEc---c--------------------------------------CCcc
Confidence 112222 24678999999998541 1 0237
Q ss_pred eeeEEEEEeCe-------EEEEcccccccccCCCCCCcceEEEEeCcchh
Q 001130 998 VHSKGMIVDDE-------YVILGSANINQRSMEGTRDTEIAMGAYQPEYT 1040 (1148)
Q Consensus 998 VHSKlmIVDD~-------~viIGSANLN~RSm~G~~DsEiav~i~dp~~~ 1040 (1148)
+|||+++||++ |+.|||+|+|.||.. .++|+++.+.|++.+
T Consensus 434 ~HaK~~lid~~e~~~~~~~~~iGTgN~n~~s~~--~y~D~~l~t~d~~i~ 481 (691)
T PRK05443 434 THAKLALVVRREGGGLRRYVHLGTGNYNPKTAR--LYTDLSLLTADPEIG 481 (691)
T ss_pred ceeEEEEEEeecCCceeEEEEEcCCCCCcchhh--hccceeEEEeChHHH
Confidence 89999999999 999999999999998 899999999998764
No 141
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.80 E-value=1.4e-08 Score=96.92 Aligned_cols=88 Identities=24% Similarity=0.327 Sum_probs=71.8
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCCceEEEE
Q 001130 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFF 428 (1148)
Q Consensus 349 L~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~~~L~~~ 428 (1148)
|+|+|..|+++...+... +++ .+||||.|.+++...+||++ +.||+|||+|.|++. ....+.|+
T Consensus 1 L~I~V~~~RdvdH~~~~~-----~~~-------~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEiel~ 64 (109)
T cd08689 1 LTITITSARDVDHIASPR-----FSK-------RPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEEEVI 64 (109)
T ss_pred CEEEEEEEecCccccchh-----hcc-------CCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEEEEE
Confidence 689999999998666211 111 28999999999997789988 589999999999994 57889999
Q ss_pred EEEccCCCCcceeeEEEeceeecc
Q 001130 429 VKDSDVVGSELIGTVAIPVEQIYS 452 (1148)
Q Consensus 429 V~D~D~~~ddfIG~v~IpL~eL~~ 452 (1148)
|||......-.||...|.+++|..
T Consensus 65 VyDk~~~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 65 VYDKGGDQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred EEeCCCCeecceeeehhhHHHHHH
Confidence 999865555689999999988874
No 142
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.78 E-value=1.2e-08 Score=118.06 Aligned_cols=120 Identities=23% Similarity=0.433 Sum_probs=100.0
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeec-eEEEEEecCC--
Q 001130 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQ-QHFYVPVAHS-- 421 (1148)
Q Consensus 345 l~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWN-E~F~f~v~~~-- 421 (1148)
|-|.|.|+|..|++|+-||..+. +.|.||.|.+++... ||.|..+++||.|| +-|.|.|.+.
T Consensus 1 mpgkl~vki~a~r~lpvmdkasd--------------~tdafveik~~n~t~-ktdvf~kslnp~wnsdwfkfevddadl 65 (1169)
T KOG1031|consen 1 MPGKLGVKIKAARHLPVMDKASD--------------LTDAFVEIKFANTTF-KTDVFLKSLNPQWNSDWFKFEVDDADL 65 (1169)
T ss_pred CCCcceeEEEeccCCcccccccc--------------cchheeEEEecccce-ehhhhhhhcCCcccccceEEecChhhh
Confidence 46889999999999999987554 379999999999987 99999999999999 5789998765
Q ss_pred -CceEEEEEEEccC-CCCcceeeEEEeceeecc----------CCcccceeeeccCCCCCCCCCCcEEEEEEE
Q 001130 422 -AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYS----------GGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1148)
Q Consensus 422 -~~~L~~~V~D~D~-~~ddfIG~v~IpL~eL~~----------G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f 482 (1148)
.+.|.|.+.|+|. +.+|-||++.|.+..|.. |..+.+|||+++.-.. -.|+|.+.++.
T Consensus 66 qdeplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihg---irgeinvivkv 135 (1169)
T KOG1031|consen 66 QDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHG---IRGEINVIVKV 135 (1169)
T ss_pred ccCCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceeccc---ccceeEEEEEE
Confidence 3779999999998 669999999999987762 3566899999976332 34688887774
No 143
>smart00149 PLCYc Phospholipase C, catalytic domain (part); domain Y. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=98.67 E-value=2.2e-09 Score=104.69 Aligned_cols=58 Identities=22% Similarity=0.226 Sum_probs=52.4
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEEE
Q 001130 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNLD 350 (1148)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~GtL~ 350 (1148)
..+.+|+.||.+.|+ +| |++.|+|||||+|..+|. .||||||+ |+.++.++|.+|...
T Consensus 41 ~~~~~~~~~n~~~l~RvY---P~g~R~dSSNy~P~~~W~----~G~QmVAlN~Qt~d~~m~lN~g~F~ 101 (115)
T smart00149 41 KAPTDFVRYNQRQLSRVY---PKGTRVDSSNYNPQVFWN----AGCQMVALNFQTPDKPMQLNQGMFR 101 (115)
T ss_pred HhHHHHHHhccccceEEC---cCCCcCCCCCCCCHHHHc----CCceEeEeecCCCChHHHHHhhHhh
Confidence 456789999999999 99 999999999999997777 99999999 999999998887554
No 144
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=98.66 E-value=2.1e-07 Score=106.92 Aligned_cols=156 Identities=17% Similarity=0.286 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHHhhhcCCcEEEEEecCCCccc-cccccccccccc
Q 001130 546 CWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRS-ILGYKMDGVMQT 624 (1148)
Q Consensus 546 ~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILVwD~~~s~~-~~g~k~~g~m~t 624 (1148)
-.++|+..|..|++.|+|......|.+....+ . .-+.|+++|+++|-|||+||+||-+..-+.. +.+ .+.
T Consensus 277 DL~ail~~i~~A~~fv~isVMdY~Ps~~y~k~-~--~fw~iDdaiR~aa~RgV~vR~lvs~~~~~~~~m~~-----~L~- 347 (456)
T KOG3603|consen 277 DLEAILNTIDEAQKFVYISVMDYFPSTIYSKN-H--RFWEIDDAIRRAAVRGVKVRLLVSCWKHSEPSMFR-----FLR- 347 (456)
T ss_pred hHHHHHHHHHHHhhheeeeehhccchheeecC-c--chhhhhHHHHHHhhcceEEEEEEeccCCCCchHHH-----HHH-
Confidence 47999999999999999999888887443333 2 3459999999999999999999832211100 000 000
Q ss_pred ccHHHHHHhhcCCcEEEEc--cCcccccccccccccccccccccceEEEEcCCCCCCCccEEEEECCccCCCCCCCCCCC
Q 001130 625 HDEETRRVFKHSSVKVLLC--PRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHH 702 (1148)
Q Consensus 625 ~~~et~~~l~~~gV~v~l~--p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~H 702 (1148)
.-......+++..|+|.++ |..... .+.....+|.|++|-+. .||+|--|.+.+||-...
T Consensus 348 SLq~l~~~~~~~~iqvk~f~VP~~~~~--------~ip~~Rv~HnKymVTe~---------aayIGTSNws~dYf~~Ta- 409 (456)
T KOG3603|consen 348 SLQDLSDPLENGSIQVKFFIVPQTNIE--------KIPFARVNHNKYMVTES---------AAYIGTSNWSGDYFTSTA- 409 (456)
T ss_pred HHHHhcCccccCceEEEEEEeCCCccc--------cCchhhhccceeEEeec---------ceeeeccCCCccceeccC-
Confidence 0000111224567787765 543211 12334689999999997 899999999999883210
Q ss_pred CcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEE-----cCHHHHHHHHHHHHHHHhhc
Q 001130 703 PLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKI-----DGPAAYDVLTNFEERWRKAS 760 (1148)
Q Consensus 703 ~l~d~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI-----~GPaa~Dl~~~F~qrWn~~t 760 (1148)
-+++.| .|+++.+|...|+++|+...
T Consensus 410 --------------------------------G~~ivv~q~~~~~~~~~ql~~vFeRdW~S~Y 440 (456)
T KOG3603|consen 410 --------------------------------GTAIVVRQTPHKGTLVSQLKAVFERDWNSTY 440 (456)
T ss_pred --------------------------------ceEEEEecCCCCCcHHHHHHHHHhhcccccc
Confidence 122222 46799999999999999653
No 145
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.63 E-value=8.3e-09 Score=75.67 Aligned_cols=27 Identities=63% Similarity=1.040 Sum_probs=18.5
Q ss_pred cccccceEEEEcCCCCCCCccEEEEECCccCCCCC
Q 001130 662 IYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGR 696 (1148)
Q Consensus 662 ~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgR 696 (1148)
.++||||++|||++ +|||||+|||++|
T Consensus 2 ~~~~H~K~~vvD~~--------~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 2 GGSHHQKFVVVDDR--------VAFVGGANLCDGR 28 (28)
T ss_dssp TBEE---EEEETTT--------EEEEE---SSHHH
T ss_pred CcceeeEEEEEcCC--------EEEECceecCCCC
Confidence 47899999999996 9999999999864
No 146
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=98.63 E-value=3.4e-07 Score=109.54 Aligned_cols=137 Identities=18% Similarity=0.205 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhhccEEEEEEeEeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCC--CCCCCc
Q 001130 840 SIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPE--GVPTGA 917 (1148)
Q Consensus 840 sI~~Ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Pe--g~p~~~ 917 (1148)
.+..+++++|++|+++||||+-||-.+. ++.+++.+|.+|.++++||+|+|++...-. |..+..
T Consensus 35 ~f~~~Ll~~I~~Ak~~I~l~~y~~~~D~--------------~g~~il~AL~~a~~~~~gv~VrvLvD~~Ra~Rg~iG~~ 100 (451)
T PRK09428 35 DFRETLLEKIASAKKRIYIVALYLEDDE--------------AGREILDALYQAKQQNPELDIKVLVDWHRAQRGLIGAA 100 (451)
T ss_pred HHHHHHHHHHHhcCCeEEEEEEEecCCc--------------hHHHHHHHHHHHHhcCCCcEEEEEEEcccccccccccC
Confidence 6889999999999999999999998664 256888999988888899999999986311 000000
Q ss_pred chhHHHHHHHHhHhhHHHHHHHHHHHcC--CceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCCcc
Q 001130 918 ATQRILFWQHKTMQMMYETIYKALVEVG--LEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFM 995 (1148)
Q Consensus 918 s~~~il~~~~rTm~~~~~si~~~L~~~G--v~~~~~P~~Yl~f~~L~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 995 (1148)
+ .....+++..|.++| +++.+ |....+ .+...
T Consensus 101 ~------------~~~~~~~~~~l~~~~~gv~v~~--------f~~p~~--------------------------~~e~~ 134 (451)
T PRK09428 101 A------------SNTNADWYCEMAQEYPGVDIPV--------YGVPVN--------------------------TREAL 134 (451)
T ss_pred C------------CCcCHHHHHHHHHhCCCceEEE--------cCCccc--------------------------cchhh
Confidence 0 001134677788764 66643 211000 00001
Q ss_pred eeeeeEEEEEeCeEEEEcccccccccCCC----CCCcceEEEEeCcch
Q 001130 996 IYVHSKGMIVDDEYVILGSANINQRSMEG----TRDTEIAMGAYQPEY 1039 (1148)
Q Consensus 996 IYVHSKlmIVDD~~viIGSANLN~RSm~G----~~DsEiav~i~dp~~ 1039 (1148)
...|-|++||||++++.| ||||+--+.. ..|. .+.|++|..
T Consensus 135 gr~HrKi~IiD~~v~ysG-aNi~d~Yl~~~~~~r~Dr--y~~i~g~~l 179 (451)
T PRK09428 135 GVLHLKGFIIDDTVLYSG-ASLNNVYLHQHDKYRYDR--YHLIRNAEL 179 (451)
T ss_pred hhceeeEEEECCCEEEec-ccccHHHhcCCcccCcce--EEEEeCchH
Confidence 247999999999999999 8999855431 1244 566777763
No 147
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=98.62 E-value=4.9e-09 Score=115.24 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=52.6
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001130 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1148)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1148)
..+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. .||||||+ |+.++.++|.+|..
T Consensus 196 ~~~~~~v~~n~~~l~RiY---PkgtRidSSNynP~~~W~----~G~QmVALN~QT~d~~M~LN~G~F 255 (258)
T cd08630 196 EAGNSFVRHNARQLTRVY---PLGLRMNSANYSPQEMWN----SGCQLVALNFQTPGYEMDLNAGRF 255 (258)
T ss_pred HhHHHHHHhhhcccceeC---CCCCcCCCCCCCcHHHhc----CCCeEEEecccCCChhhhhhcccc
Confidence 566789999999999 99 999999999999997777 99999999 99999999998864
No 148
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=98.61 E-value=6.1e-09 Score=114.27 Aligned_cols=57 Identities=21% Similarity=0.111 Sum_probs=52.7
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001130 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1148)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1148)
..+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. +||||||+ |+.++.++|.+|..
T Consensus 195 ~~~~~~v~~n~r~l~RvY---P~GtRidSSNynP~~~W~----~G~QmVALN~Qt~d~~M~LN~G~F 254 (257)
T cd08595 195 SSGADFVGHTQRFITRIY---PKGTRASSSNYNPQEFWN----VGCQMVALNFQTLGAPMDLQNGKF 254 (257)
T ss_pred HhHHHHHHHhhcCCceeC---cCCCCCCCCCCCcHHHHc----CCCeEEEecccCCChhhhhhcCcc
Confidence 566789999999999 99 999999999999997777 99999999 99999999998854
No 149
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=98.61 E-value=6e-09 Score=113.88 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=53.0
Q ss_pred cCCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001130 285 LSSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1148)
Q Consensus 285 ~~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1148)
...+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. .||||||+ |+.++.++|.+|..
T Consensus 191 ~~~~~~~v~~N~~~l~RvY---P~G~RvdSSNy~P~~~W~----~G~QmVALN~Qt~d~~m~lN~g~F 251 (254)
T cd08633 191 QQKPAQYLRFNQRQLSRIY---PSSYRVDSSNYNPQPFWN----AGCQMVALNYQSEGRMLQLNRAKF 251 (254)
T ss_pred HHCHHHHHHhhhhcccccC---CCCCCCCCCCCCchHHhc----CCCeEEEecccCCCchhHhhcccc
Confidence 3567789999999999 99 999999999999997777 99999999 99999999988864
No 150
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=98.61 E-value=5.4e-09 Score=113.04 Aligned_cols=57 Identities=19% Similarity=0.086 Sum_probs=52.5
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001130 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1148)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1148)
..+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. .||||||+ |+.+..++|.+|..
T Consensus 167 ~~~~~~v~~n~~~l~RvY---P~g~RvdSSNy~P~~~W~----~G~QmVAlN~Qt~d~~m~lN~g~F 226 (229)
T cd08592 167 QKGKIFLKYNRRQLSRVY---PKGQRVDSSNYDPVPMWN----CGSQMVALNFQTPDKPMQLNQALF 226 (229)
T ss_pred hhHHHHHHhhhhcceeeC---CCCCcCcCCCCCchHHhc----CCceEEEeeccCCChhHHhhcccc
Confidence 577889999999999 99 999999999999997777 99999999 99999999888854
No 151
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=98.59 E-value=5.9e-09 Score=114.24 Aligned_cols=57 Identities=19% Similarity=0.121 Sum_probs=52.6
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001130 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1148)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1148)
..+.+|+.||.+.|+ +| |+|.|||||||+|+.+|. .||||||+ |+.++.++|.+|..
T Consensus 192 ~~~~~lv~~n~~~l~RiY---P~g~RvdSSNynP~~~W~----~G~QmVALN~Qt~d~~m~LN~G~F 251 (254)
T cd08596 192 RYPQKLVQHTRCQLLRTY---PAATRIDSSNPNPLIFWL----HGLQLVALNYQTDDLPMHLNAAMF 251 (254)
T ss_pred HCHHHHHHhhhhcceeec---cCCCcCCCCCCCcHHHHh----CCCeEEeecccCCChHHHhhhchh
Confidence 566889999999999 99 999999999999997777 99999999 99999999988854
No 152
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=98.59 E-value=6.9e-09 Score=114.44 Aligned_cols=57 Identities=26% Similarity=0.230 Sum_probs=52.6
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001130 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1148)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1148)
..+.+|+.||.+.|+ +| |+|.|+|||||+|..+|. .||||||+ |+.++.++|.+|..
T Consensus 198 ~~~~~~v~~n~~~l~RvY---P~G~RvdSSNynP~~~W~----~G~QmVALN~Qt~d~~M~lN~g~F 257 (260)
T cd08597 198 EFPEDFVNYNKKFLSRVY---PSPMRVDSSNYNPQDFWN----CGCQIVAMNYQTPGLMMDLNTGKF 257 (260)
T ss_pred HCHHHHHHHhhhcCceeC---cCCCCCCCCCCCchHHhc----CCCeEeeecccCCChhhhhhcccc
Confidence 566889999999999 99 999999999999997777 99999999 99999999988864
No 153
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=98.59 E-value=8.8e-09 Score=112.95 Aligned_cols=57 Identities=23% Similarity=0.106 Sum_probs=52.4
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001130 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1148)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1148)
..+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. .||||||+ |+.++.++|.+|..
T Consensus 196 ~~~~~~v~~n~~~l~RiY---P~g~RvdSSNy~P~~~W~----~G~QmVALN~Qt~d~~m~LN~G~F 255 (258)
T cd08629 196 ESGNGFVRHNVSCLSRIY---PAGWRTDSSNYSPVEMWN----GGCQIVALNFQTPGPEMDVYLGCF 255 (258)
T ss_pred HhHHHHHHhchhccceeC---CCCCCCCCCCCCchHHhc----CCceEEEecccCCChhHHhhhchh
Confidence 456789999999999 99 999999999999997777 99999999 99999999988854
No 154
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=98.59 E-value=1e-08 Score=110.54 Aligned_cols=56 Identities=18% Similarity=0.067 Sum_probs=51.2
Q ss_pred CCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001130 287 SPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1148)
Q Consensus 287 ~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1148)
.+.+|+.||.+.|+ +| |+|.|+|||||+|..+|. .||||||+ |+.++.++|..|..
T Consensus 168 ~~~~fv~~n~~~l~RiY---P~G~RidSSNy~P~~~W~----~G~QmVALN~Qt~d~~M~LN~G~F 226 (229)
T cd08627 168 KGKKFLQYNRRQLSRIY---PKGQRLDSSNYDPLPMWI----CGSQLVALNFQTPDKPMQMNQALF 226 (229)
T ss_pred hHHHHHHhcccceeEeC---CCCCcCcCCCCCchhHhc----cCcEEEEeeccCCCcchhhhcCcc
Confidence 45689999999999 99 999999999999997777 99999999 99999999888753
No 155
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=98.58 E-value=9.3e-09 Score=113.41 Aligned_cols=57 Identities=26% Similarity=0.245 Sum_probs=52.1
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001130 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1148)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1148)
..+.+|+.||.+.|+ +| |+|.|||||||+|..+|. .||||||+ |+.++.++|..|..
T Consensus 196 ~~~~~~v~~N~~~l~RvY---P~G~RvdSSNydP~~~W~----~G~QmVALN~QT~D~~M~LN~G~F 255 (258)
T cd08625 196 KSPMEFVEYNKKQLSRIY---PKGTRVDSSNYMPQLFWN----VGCQMVALNFQTLDLAMQLNMGVF 255 (258)
T ss_pred hCHHHHHHhhhcceeeec---cCCCcCcCCCCCChhHhc----CcceEEEeecCCCCcchhhhcccc
Confidence 456789999999999 99 999999999999998888 99999999 99999999888754
No 156
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=98.58 E-value=7.8e-09 Score=113.39 Aligned_cols=57 Identities=19% Similarity=0.143 Sum_probs=52.2
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001130 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1148)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1148)
..+.+|+.||.+.|+ +| |+|.|+|||||+|..+|. .||||||+ |+.++.++|.+|..
T Consensus 192 ~~~~~~v~~N~~~l~RvY---P~G~RvdSSNynP~~~W~----~G~QmVALN~QT~d~~M~LN~G~F 251 (254)
T cd08628 192 QKPVQLLKYNRKGLTRVY---PKGQRVDSSNYDPFRLWL----CGSQMVALNFQTADKYMQLNHALF 251 (254)
T ss_pred hHHHHHHHHhHhhhhhhC---CCCCcCCCCCCCchHHhc----CCCeEEEeeccCCChhhhhhhhhc
Confidence 456789999999999 99 999999999999998877 99999999 99999999888854
No 157
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=98.57 E-value=8.4e-09 Score=113.43 Aligned_cols=57 Identities=19% Similarity=0.121 Sum_probs=52.1
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001130 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1148)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1148)
..+.+|+.||.+.|+ +| |+|.|+|||||+|..+|. .||||||+ |+.++.++|..|..
T Consensus 199 ~~~~~fv~~N~~~l~RiY---P~G~RvdSSNynP~~~W~----~G~QmVALN~QT~D~~M~LN~G~F 258 (261)
T cd08624 199 KASVQFVEYNKRQMSRIY---PKGTRMDSSNYMPQMFWN----VGCQMVALNFQTMDLPMQQNMALF 258 (261)
T ss_pred HhHHHHHHhchhheeeeC---CCCCcccCcCCCchHHhc----CCCeEEEecccCCChhhhhhcccc
Confidence 455789999999999 99 999999999999998887 99999999 99999999888854
No 158
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=98.57 E-value=8.2e-09 Score=113.37 Aligned_cols=57 Identities=21% Similarity=0.082 Sum_probs=52.4
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001130 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1148)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1148)
..+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. .||||||+ |+.++.++|.+|..
T Consensus 196 ~~~~~~v~~n~~~l~RiY---P~g~RvdSSNy~P~~~W~----~G~QmVALN~Qt~d~~m~LN~G~F 255 (258)
T cd08631 196 EAGNEFVQHNTWQLSRVY---PSGLRTDSSNYNPQEMWN----AGCQMVALNFQTAGLEMDLNDGLF 255 (258)
T ss_pred hchHHHHHHHHhcCceeC---cCCCCCCCCCCCcHHHHh----CCCeEeeecccCCChhHHhhcchh
Confidence 456789999999999 99 999999999999997777 99999999 99999999988854
No 159
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=98.56 E-value=8.7e-09 Score=112.42 Aligned_cols=57 Identities=19% Similarity=0.171 Sum_probs=52.5
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001130 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1148)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1148)
..+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. .||||||+ |+.++.++|.+|..
T Consensus 191 ~~~~~~v~~n~~~l~RvY---P~g~RidSSNy~P~~~W~----~G~QmVAlN~Qt~d~~m~LN~g~F 250 (253)
T cd08632 191 QKAEQFMTYNQKQLTRIY---PSAYRIDSSNFNPLPYWN----VGCQLVALNYQSEGRMMQLNRAKF 250 (253)
T ss_pred HhHHHHHHHhhhccceeC---CCCCcCcCCCCCcHHHhc----CCCeEEEecccCCChhHHhhcccc
Confidence 566789999999999 99 999999999999997777 99999999 99999999998864
No 160
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=98.55 E-value=1.2e-08 Score=110.12 Aligned_cols=57 Identities=19% Similarity=0.163 Sum_probs=52.4
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001130 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1148)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1148)
..+.+|+.||.+.|+ +| |+|.|+|||||+|..+|. .||||||+ |+.++.++|..|..
T Consensus 165 ~~~~~~v~~n~~~l~RiY---P~g~RvdSSNy~P~~~W~----~G~QmVALN~Qt~d~~m~LN~g~F 224 (227)
T cd08594 165 QKAAQFLRFNQRQLSRIY---PSAYRIDSSNFNPQPYWN----AGCQLVALNYQTEGRMLQLNRAKF 224 (227)
T ss_pred HHHHHHHHhcccccceeC---CCCCcCcCCCCCchHHhc----CCceEEEecccCCChhhHhhcccc
Confidence 567889999999999 99 999999999999998877 99999999 99999999888754
No 161
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=98.55 E-value=1.2e-08 Score=112.05 Aligned_cols=58 Identities=24% Similarity=0.271 Sum_probs=52.7
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEEE
Q 001130 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNLD 350 (1148)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~GtL~ 350 (1148)
..+.+|+.||.+.|+ +| |+|.|||||||+|+.+|. .||||||+ |+.++.++|.+|...
T Consensus 195 ~~~~~~v~~n~~~l~RiY---P~G~RvdSSNynP~~~W~----~G~QmVALN~Qt~d~~m~LN~G~F~ 255 (257)
T cd08626 195 TSAIEFVNYNKRQMSRIY---PKGTRVDSSNYMPQIFWN----AGCQMVSLNFQTPDLGMQLNQGKFE 255 (257)
T ss_pred HHHHHHHHHhhhcCceeC---cCCCCCcCCCCCcHHHhc----CCCeEEEecccCCChhHHhhhcccc
Confidence 456789999999999 99 999999999999997777 99999999 999999999988643
No 162
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=98.52 E-value=1.5e-08 Score=111.41 Aligned_cols=57 Identities=25% Similarity=0.224 Sum_probs=52.1
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001130 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1148)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1148)
..+.+|+.||.+.|+ +| |+|.|+|||||+|..+|. .||||||+ |+.++.++|.+|..
T Consensus 196 ~~~~~~v~~N~~~l~RvY---P~G~RvdSSNy~P~~~W~----~G~QmVALN~QT~d~~M~LN~G~F 255 (258)
T cd08623 196 KSPVEFVEYNKMQLSRIY---PKGTRVDSSNYMPQLFWN----AGCQMVALNFQTVDLSMQINMGMY 255 (258)
T ss_pred hCHHHHHHHhhhhceeec---cCCCcccCCCCCChhhhc----CCceEEEeecCCCCcchhhhcccc
Confidence 556789999999999 99 999999999999998887 99999999 99999999888753
No 163
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=98.48 E-value=2.1e-08 Score=108.79 Aligned_cols=57 Identities=18% Similarity=0.100 Sum_probs=52.6
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001130 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1148)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1148)
..+.+|+.||.+.|+ +| |+|.|+|||||+|..+|. .||||||+ |+.++.++|.+|..
T Consensus 166 ~~~~~~v~~n~~~l~RvY---P~g~RvdSSNy~P~~~W~----~G~QmVALN~Qt~d~~m~LN~G~F 225 (228)
T cd08599 166 EHPTDLIEFTQKNLLRVY---PAGLRITSSNYDPMLAWM----HGAQMVALNMQGYDRPLWLNRGKF 225 (228)
T ss_pred hcHHHHHHHhhccceeec---cCCcccCCCCCCChHHhc----CcceEeeeecCCCChhhhhhcccc
Confidence 567789999999999 99 999999999999997777 99999999 99999999888854
No 164
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=98.47 E-value=2.5e-08 Score=109.51 Aligned_cols=57 Identities=26% Similarity=0.299 Sum_probs=52.2
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001130 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1148)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1148)
..+.+|+.||.+.|+ +| |+|.|+|||||+|..+|. .||||||+ |+.++.++|.+|..
T Consensus 195 ~~~~~~v~~n~~~l~RvY---P~g~RvdSSNynP~~~W~----~G~QmVALN~Qt~d~~m~lN~g~F 254 (257)
T cd08591 195 KSPIEFVNYNKRQLSRIY---PKGTRVDSSNYMPQIFWN----AGCQMVALNFQTPDLPMQLNQGKF 254 (257)
T ss_pred HHHHHHHHHhhhcCceeC---cCCCcCcCCCCCcHHHhc----CCCeEEEecCcCCChhHHhhcccc
Confidence 456789999999999 99 999999999999997777 99999999 99999999988854
No 165
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=98.46 E-value=1.9e-08 Score=109.20 Aligned_cols=57 Identities=16% Similarity=0.051 Sum_probs=52.2
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001130 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1148)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1148)
..+.+|+.||.+.|+ +| |+|.|+|||||+|..+|. .||||||+ |+.++.++|.+|..
T Consensus 169 ~~~~~lv~~n~~~l~RvY---P~g~RvdSSNynP~~~W~----~G~QmVALN~Qt~d~~m~LN~G~F 228 (231)
T cd08598 169 DKRAALDKHNRRHLMRVY---PSGTRISSSNFNPLPFWR----AGVQMVALNWQTYDLGMQLNEAMF 228 (231)
T ss_pred HHHHHHHHHhhhceeeeC---CCCCcCCCCCCCcHHHHh----CCCeEEEecccCCChhhhhhcccc
Confidence 466789999999999 99 999999999999997777 99999999 99999999888854
No 166
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=98.44 E-value=2.9e-08 Score=107.35 Aligned_cols=57 Identities=26% Similarity=0.290 Sum_probs=52.3
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001130 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1148)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1148)
..+.+|+.||.+.|+ +| |+|.|+|||||+|..+|. .||||||+ |+.++.++|..|..
T Consensus 164 ~~~~~l~~~n~~~l~RvY---P~g~RvdSSNynP~~~W~----~G~QmVALN~Qt~d~~m~LN~g~F 223 (226)
T cd08558 164 ESPEEFVKYNKRQLSRVY---PKGTRVDSSNYNPQPFWN----AGCQMVALNYQTPDLPMQLNQGKF 223 (226)
T ss_pred HChHHHHHhcccceeEEC---cCCCcCCCCCCCcHHHHh----CCCeEeeecccCCChhhhhhcccc
Confidence 467899999999999 99 999999999999997777 99999999 99999999888753
No 167
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=98.44 E-value=3.2e-08 Score=109.06 Aligned_cols=57 Identities=23% Similarity=0.055 Sum_probs=52.3
Q ss_pred CCCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceEE
Q 001130 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1148)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~GtL 349 (1148)
..+.+|..||.+.|+ +| |+|.|+|||||+|..+|. .||||||+ |+.++.++|.+|..
T Consensus 195 ~~~~~lv~~n~~~l~RvY---P~g~RidSSNynP~~~W~----~G~QmVALN~Qt~D~~m~LN~G~F 254 (257)
T cd08593 195 ESGNEFVRHNKRQLSRIY---PAGLRTDSSNYDPQEMWN----VGCQIVALNFQTPGEEMDLNDGLF 254 (257)
T ss_pred HhHHHHHHhhhhccceeC---CCCCcCCCCCCCcHHHHh----CCCeEeeecccCCChHHHhhhchh
Confidence 456789999999999 99 999999999999997777 99999999 99999999988854
No 168
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=98.36 E-value=3.4e-07 Score=67.44 Aligned_cols=26 Identities=54% Similarity=0.700 Sum_probs=24.4
Q ss_pred eeeeeEEEEEeCeEEEEccccccccc
Q 001130 996 IYVHSKGMIVDDEYVILGSANINQRS 1021 (1148)
Q Consensus 996 IYVHSKlmIVDD~~viIGSANLN~RS 1021 (1148)
...|+|+||||+++++|||+||+.||
T Consensus 3 ~~~H~K~~v~D~~~~~iGs~N~~~~~ 28 (28)
T smart00155 3 GVLHTKLMIVDDEIAYIGSANLDGRS 28 (28)
T ss_pred CcEEeEEEEEcCCEEEEeCccCCCCC
Confidence 47899999999999999999999987
No 169
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.31 E-value=2.1e-07 Score=110.90 Aligned_cols=89 Identities=27% Similarity=0.406 Sum_probs=77.2
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCE------EEEeeeeeeCCCCCeeceEEEEEecCC
Q 001130 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA------VVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1148)
Q Consensus 348 tL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~------~~~RTkvi~nt~NPvWNE~F~f~v~~~ 421 (1148)
+|.|.|+-|+++-+.|.+|. +||||+|++... ...||+|+.+|+||+++|+|+|.|.-.
T Consensus 948 ~L~veVlhA~diipLD~NGl---------------SDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e 1012 (1103)
T KOG1328|consen 948 TLVVEVLHAKDIIPLDSNGL---------------SDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPE 1012 (1103)
T ss_pred chhhhhhccccccccCCCCC---------------CCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCcc
Confidence 68888999999988998887 999999999763 335999999999999999999998532
Q ss_pred -----CceEEEEEEEccC-CCCcceeeEEEeceeec
Q 001130 422 -----AAEVHFFVKDSDV-VGSELIGTVAIPVEQIY 451 (1148)
Q Consensus 422 -----~~~L~~~V~D~D~-~~ddfIG~v~IpL~eL~ 451 (1148)
.+.|.|+|+|+|. ..+||-|++.+.|..+.
T Consensus 1013 ~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1013 PCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred ccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 3679999999998 56999999999888776
No 170
>PF00387 PI-PLC-Y: Phosphatidylinositol-specific phospholipase C, Y domain This entry is for the whole phospholipase C protein; InterPro: IPR001711 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), an eukaryotic intracellular enzyme, plays an important role in signal transduction processes [] (see IPR001192 from INTERPRO). It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as 'X-box' (see IPR000909 from INTERPRO) and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. At the C-terminal of the Y-box, there is a C2 domain (see IPR000008 from INTERPRO) possibly involved in Ca-dependent membrane attachment.; GO: 0004435 phosphatidylinositol phospholipase C activity, 0006629 lipid metabolic process, 0007165 signal transduction, 0035556 intracellular signal transduction; PDB: 3OHM_B 2FJU_B 2ZKM_X 3QR1_D 3QR0_A 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=98.21 E-value=3.8e-08 Score=96.73 Aligned_cols=54 Identities=20% Similarity=0.142 Sum_probs=38.8
Q ss_pred CCCCcccCCCCCcc-cCCcccCCCCcCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeece
Q 001130 287 SPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG 347 (1148)
Q Consensus 287 ~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~G 347 (1148)
.+.+|+.||.+.++ +| |++.|+|||||+|..+|. .||||||+ |+.+..++|-.|
T Consensus 44 ~~~~l~~~~~~~l~Rvy---P~~~R~~SsN~~P~~~W~----~G~Q~vALN~Qt~d~~m~ln~g 100 (118)
T PF00387_consen 44 HPSELVEHNKRHLVRVY---PSGTRIDSSNFNPLPFWN----CGCQMVALNFQTPDEPMQLNQG 100 (118)
T ss_dssp CHHHHHHHHHHSEEEEE-----TT-TT-----THHHHT----TT-SEEEB-TTS-SHHHHHHHH
T ss_pred ccchHHHhcccceEEec---CCccccCCCCCChHHHhh----ccCccceeeccCCChhHHHHHh
Confidence 46789999999999 99 999999999999997777 99999999 999998876554
No 171
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=98.16 E-value=8.7e-06 Score=97.26 Aligned_cols=135 Identities=22% Similarity=0.306 Sum_probs=94.7
Q ss_pred HHHHHHHHHhccceEEEE-eeccceeeEEeCCCCchHHHHHHHHHHhhhcCCcEEEEEecCCCccccccccccccccccc
Q 001130 548 YDICNAISQAQRLIYITG-WSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHD 626 (1148)
Q Consensus 548 ~al~eAI~~Ar~sI~I~~-W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILVwD~~~s~~~~g~k~~g~m~t~~ 626 (1148)
..++++|.+|+++|+|+. |.+ . +..+.++|+.++++||+|+|++ ++.+.... .......
T Consensus 273 ~~~~~~i~~A~~~i~i~~pYf~-------~------~~~~~~al~~a~~~Gv~V~ii~-~~~~~~d~------~~~~~~~ 332 (438)
T COG1502 273 RLLLKAINSARESILIATPYFV-------P------DRELLAALKAAARRGVDVRIII-PSLGANDS------AIVHAAY 332 (438)
T ss_pred HHHHHHHHhhceEEEEEcCCcC-------C------CHHHHHHHHHHHhcCCEEEEEe-CCCCCCCh------HHHHHHH
Confidence 679999999999999998 633 2 3578899999999999999998 63221100 0000001
Q ss_pred HHHHHHhhcCCcEEEEccCcccccccccccccccccccccceEEEEcCCCCCCCccEEEEECCccCCCCCCCCCCCCccc
Q 001130 627 EETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFR 706 (1148)
Q Consensus 627 ~et~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~H~l~d 706 (1148)
......+...|+++...+. + ...|.|++|||++ +++||+.|+...-+..
T Consensus 333 ~~~~~~l~~~gv~i~~~~~--------------g--~~lH~K~~iiD~~--------~~~vGS~N~~~rS~~l------- 381 (438)
T COG1502 333 RAYLKELLEAGVKVYEYPG--------------G--AFLHSKVMIIDDR--------TVLVGSANLDPRSLRL------- 381 (438)
T ss_pred HHHHHHHHHhCCEEEEecC--------------C--CcceeeEEEEcCC--------EEEEeCCcCCHhHHHH-------
Confidence 1233445678888865533 0 2589999999996 9999999998853310
Q ss_pred ccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCH-HHHHHHHHHHHHHHhh
Q 001130 707 TLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGP-AAYDVLTNFEERWRKA 759 (1148)
Q Consensus 707 ~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GP-aa~Dl~~~F~qrWn~~ 759 (1148)
| -.+.+.|+.+ .+.++...|...|...
T Consensus 382 -----------N---------------~E~~~~i~d~~~~~~~~~~~~~~~~~s 409 (438)
T COG1502 382 -----------N---------------FEVGLVIEDPELALKLRREFEADLARS 409 (438)
T ss_pred -----------h---------------hhheeEEeCHHHHHHHHHHHHHHHHHH
Confidence 1 2467788888 7899999999777654
No 172
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.01 E-value=8.8e-06 Score=97.96 Aligned_cols=105 Identities=19% Similarity=0.368 Sum_probs=80.8
Q ss_pred CCcEEEEEECCE---EEEeeeeeeCCCCCeeceEEEEEecCC----------------CceEEEEEEE-ccC-CCCccee
Q 001130 383 SDPYVTIAVAGA---VVGRTFVISNSEDPVWQQHFYVPVAHS----------------AAEVHFFVKD-SDV-VGSELIG 441 (1148)
Q Consensus 383 sDPYV~V~l~g~---~~~RTkvi~nt~NPvWNE~F~f~v~~~----------------~~~L~~~V~D-~D~-~~ddfIG 441 (1148)
+||||+|...+. ...+|+++++|.+|.|||.|.|.+... .-.|++++|+ ++. .+++|+|
T Consensus 151 ~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlG 230 (800)
T KOG2059|consen 151 CDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLG 230 (800)
T ss_pred CCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhce
Confidence 899999998762 225999999999999999999987644 1357888888 444 4589999
Q ss_pred eEEEeceeeccCCcccceeeeccC-CCCC---CCCCCcEEEEEEEecccc
Q 001130 442 TVAIPVEQIYSGGKVEGTYPVLNG-SGKP---CKPGATLTLSIQYTPMER 487 (1148)
Q Consensus 442 ~v~IpL~eL~~G~~~d~W~pL~~~-~Gk~---~~~~g~L~L~l~f~p~~~ 487 (1148)
++.+|+..+......+.||-|... +|+. -+..|.+++.+.|+...-
T Consensus 231 evrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~V 280 (800)
T KOG2059|consen 231 EVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHV 280 (800)
T ss_pred eEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeecee
Confidence 999999998865566799999653 3332 235578999999875444
No 173
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=97.97 E-value=3.2e-06 Score=62.22 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=17.9
Q ss_pred eeeeeEEEEEeCeEEEEccccccccc
Q 001130 996 IYVHSKGMIVDDEYVILGSANINQRS 1021 (1148)
Q Consensus 996 IYVHSKlmIVDD~~viIGSANLN~RS 1021 (1148)
...|+|++||||++++|||+||+.|+
T Consensus 3 ~~~H~K~~vvD~~~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 3 GSHHQKFVVVDDRVAFVGGANLCDGR 28 (28)
T ss_dssp BEE---EEEETTTEEEEE---SSHHH
T ss_pred cceeeEEEEEcCCEEEECceecCCCC
Confidence 46899999999999999999999875
No 174
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=97.75 E-value=0.0011 Score=75.99 Aligned_cols=132 Identities=18% Similarity=0.196 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHHhh--hcCCcEEEEEecCC-Ccccccccccc
Q 001130 543 HGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKS--QEGVRVLLLVWDDP-TSRSILGYKMD 619 (1148)
Q Consensus 543 ~~~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA--~rGVkVrILVwD~~-~s~~~~g~k~~ 619 (1148)
|.++|+.+...|.+|+++|+|+.-- |=. ....|.+.|..+. +.-.+|.||+ |.. +.+...+...
T Consensus 37 p~~fy~~lk~~I~~aq~Ri~lasLY------lG~-----~E~elv~cl~~aL~~~~~L~v~iLl-D~~rgtr~~~~~~s- 103 (469)
T KOG3964|consen 37 PPEFYQRLKKLIKKAQRRIFLASLY------LGK-----LERELVDCLSNALEKNPSLKVSILL-DFLRGTRELPNSCS- 103 (469)
T ss_pred CHHHHHHHHHHHHHhhheeeeeeec------cch-----hHHHHHHHHHHHhccCCCcEEEeeh-hhhhhcccCcccch-
Confidence 3478999999999999999999752 311 3467777777764 4579999997 643 2222111000
Q ss_pred cccccccHHHHHHhhcCCcEEEEc--cCcccccccccccccccccccccceEEEEcCCCCCCCccEEEEECCccCCCCCC
Q 001130 620 GVMQTHDEETRRVFKHSSVKVLLC--PRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRY 697 (1148)
Q Consensus 620 g~m~t~~~et~~~l~~~gV~v~l~--p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRw 697 (1148)
|....-..+++. ..|++.++ |...+.....+-.+..-.....|-|+.-+|++ ..+-|.||..+|+
T Consensus 104 --~llp~~l~kkf~--e~vd~~lyhtp~Lrg~~k~Lvp~rfneg~GlQhmKIy~fdde---------viiSGanls~dyf 170 (469)
T KOG3964|consen 104 --ALLPVWLGKKFP--ERVDESLYHTPFLRGLSKSLVPARFNEGLGLQHMKIYGFDDE---------VIISGANLSNDYF 170 (469)
T ss_pred --hhchHHHhhhhh--hhhceeeecChhhhhhhhhcCchhhccccchhhhhhhcccHh---------hhcccccchhhhh
Confidence 000000111111 23555544 32222211111111111246789999999994 5788999999876
Q ss_pred CCC
Q 001130 698 DNP 700 (1148)
Q Consensus 698 Dt~ 700 (1148)
-+.
T Consensus 171 TNR 173 (469)
T KOG3964|consen 171 TNR 173 (469)
T ss_pred ccc
Confidence 443
No 175
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.64 E-value=9e-05 Score=73.33 Aligned_cols=112 Identities=25% Similarity=0.355 Sum_probs=76.5
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC---CEEEEeeeeeeCCCCCeeceEEEEEec------
Q 001130 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA---GAVVGRTFVISNSEDPVWQQHFYVPVA------ 419 (1148)
Q Consensus 349 L~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~---g~~~~RTkvi~nt~NPvWNE~F~f~v~------ 419 (1148)
|.|.|++|.||+.....-. .+-....-.-.++.++||+|.+. +.+..+|+++-++..|.+|-+|+|+|.
T Consensus 1 lsv~I~RA~GLqaAA~~la--~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~ 78 (143)
T cd08683 1 LSVQIHRASGLQAAARALA--EQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRN 78 (143)
T ss_pred CeEEeehhhhHHHHHHHHh--hhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcC
Confidence 4688899999864211000 00000000012347999999963 455569999999999999999999875
Q ss_pred --CC--------CceEEEEEEEccC-----------CCCcceeeEEEeceeeccC-Ccccceeee
Q 001130 420 --HS--------AAEVHFFVKDSDV-----------VGSELIGTVAIPVEQIYSG-GKVEGTYPV 462 (1148)
Q Consensus 420 --~~--------~~~L~~~V~D~D~-----------~~ddfIG~v~IpL~eL~~G-~~~d~W~pL 462 (1148)
.. .+.+.|+||+.+. .+|-+||.+.||+.+|... ..+.+||++
T Consensus 79 ~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 79 SGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred CCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 11 2568999998664 2355899999999998843 457899985
No 176
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=2.7e-05 Score=87.15 Aligned_cols=126 Identities=18% Similarity=0.186 Sum_probs=89.7
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC-----EEEEeeeeeeCCCCCeeceEEEEE--ecC
Q 001130 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-----AVVGRTFVISNSEDPVWQQHFYVP--VAH 420 (1148)
Q Consensus 348 tL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g-----~~~~RTkvi~nt~NPvWNE~F~f~--v~~ 420 (1148)
.|+++|..|++|+.||+.+. .|||++..+.. .. .||++..+++||.|||+-... ..+
T Consensus 94 ~~~~tl~~a~~lk~~~~~~~---------------~d~~~~~~llpga~kl~s-lr~~t~~n~lN~~w~etev~~~i~~~ 157 (362)
T KOG1013|consen 94 MLDTTLDRAKGLKPMDINGL---------------ADPYVKLHLLPGAGKLNS-LRTKTTRNTLNPEWNETEVYEGITDD 157 (362)
T ss_pred hcceeechhcccchhhhhhh---------------cchHHhhhcccchhhhhh-hhHHhhccCcCcceeccceecccccc
Confidence 48999999999999999887 79999999853 23 389999999999999965544 333
Q ss_pred C--CceEEEEEEEccC-CCCcceeeEEEeceeeccCCc--ccceeeeccC----CCCCCCCCCcEEEEEEEecccccc
Q 001130 421 S--AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGK--VEGTYPVLNG----SGKPCKPGATLTLSIQYTPMERLS 489 (1148)
Q Consensus 421 ~--~~~L~~~V~D~D~-~~ddfIG~v~IpL~eL~~G~~--~d~W~pL~~~----~Gk~~~~~g~L~L~l~f~p~~~~~ 489 (1148)
. ...+++.|.|++. ..++++|+..+++..|.+... ...||.-..+ +..-....|.|.+++.|.......
T Consensus 158 ~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~~l 235 (362)
T KOG1013|consen 158 DTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTTPGL 235 (362)
T ss_pred hhhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCCCce
Confidence 2 2567888888887 458999999999998886432 2223322111 111124557888888887665544
No 177
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=97.49 E-value=0.00085 Score=83.90 Aligned_cols=118 Identities=19% Similarity=0.198 Sum_probs=83.9
Q ss_pred HHHHHHHHhhcc-----EEEEEEeEeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCc
Q 001130 843 TAYVKAIRSAQH-----FIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGA 917 (1148)
Q Consensus 843 ~Ayl~aI~~Ak~-----fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p~~~ 917 (1148)
...++.|++|.+ .|.|+-.-+..++ .|+.+|.+| +++|++|.|++-...-.+ ++.
T Consensus 342 ~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~~s-----------------~ii~aL~~A--a~~Gk~V~v~veLkArfd-e~~ 401 (672)
T TIGR03705 342 DPVVEFLRQAAEDPDVLAIKQTLYRTSKDS-----------------PIIDALIEA--AENGKEVTVVVELKARFD-EEA 401 (672)
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEEecCCc-----------------HHHHHHHHH--HHcCCEEEEEEEehhhcc-chh
Confidence 568889999998 8999764443332 467777776 468999999998532111 111
Q ss_pred chhHHHHHHHHhHhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCCccee
Q 001130 918 ATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIY 997 (1148)
Q Consensus 918 s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~L~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~IY 997 (1148)
+ . .+.+.|.++|+++.|. + ....
T Consensus 402 n----i------------~wa~~le~aG~~viyg---------~--------------------------------~~~k 424 (672)
T TIGR03705 402 N----I------------RWARRLEEAGVHVVYG---------V--------------------------------VGLK 424 (672)
T ss_pred h----H------------HHHHHHHHcCCEEEEc---------C--------------------------------CCee
Confidence 1 1 2456899999988641 1 0247
Q ss_pred eeeEEEEEeC-------eEEEEcccccccccCCCCCCcceEEEEeCcch
Q 001130 998 VHSKGMIVDD-------EYVILGSANINQRSMEGTRDTEIAMGAYQPEY 1039 (1148)
Q Consensus 998 VHSKlmIVDD-------~~viIGSANLN~RSm~G~~DsEiav~i~dp~~ 1039 (1148)
+|||+|+||+ +++.||+.|+|..... .=+++++...+++.
T Consensus 425 ~H~K~~li~r~~~~~~~~y~~igTgN~n~~ta~--~y~D~~l~t~~~~i 471 (672)
T TIGR03705 425 THAKLALVVRREGGELRRYVHLGTGNYHPKTAR--LYTDLSLFTADPEI 471 (672)
T ss_pred eeeEEEEEEEeeCCceEEEEEecCCCCCCcccc--cccceeEEEeChHH
Confidence 8999999997 4799999999999765 56788888777654
No 178
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.00023 Score=84.45 Aligned_cols=100 Identities=18% Similarity=0.262 Sum_probs=79.1
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC------EEEEeeeeeeCCCCCeeceEEEEEecCC
Q 001130 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG------AVVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1148)
Q Consensus 348 tL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g------~~~~RTkvi~nt~NPvWNE~F~f~v~~~ 421 (1148)
.++|+|+.|.+|+ -...|. -.|||.|.+-| ++...||++.|+|.|.+||+|+|.+...
T Consensus 1126 kvtvkvvaandlk-wqtsgm---------------FrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e 1189 (1283)
T KOG1011|consen 1126 KVTVKVVAANDLK-WQTSGM---------------FRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNE 1189 (1283)
T ss_pred eEEEEEEeccccc-chhccc---------------cccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccC
Confidence 3789999999987 222222 57999999854 4445899999999999999999998544
Q ss_pred C----ceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeeec
Q 001130 422 A----AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1148)
Q Consensus 422 ~----~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL~ 463 (1148)
. -.|.|.|+|+.-- .|..+|.+.++|.++.....--.|+||.
T Consensus 1190 ~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLg 1236 (1283)
T KOG1011|consen 1190 GGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVADKGSCACWVPLG 1236 (1283)
T ss_pred CCCceEEEEEeehhheeecccceeeeeeeehhhHhhcCceeEeeecc
Confidence 2 5699999999874 4679999999999998665566899993
No 179
>PF13918 PLDc_3: PLD-like domain
Probab=97.42 E-value=0.00091 Score=70.31 Aligned_cols=57 Identities=23% Similarity=0.316 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHHhh-hcCCcEEEEE
Q 001130 546 CWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKS-QEGVRVLLLV 604 (1148)
Q Consensus 546 ~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA-~rGVkVrILV 604 (1148)
-.++|+..|++|+++|||+-....|.+.- .. ...-...|+++|++|| +|||+||+||
T Consensus 83 DldAIl~~I~~A~~fI~IsVMdY~P~~~~-~~-~~~YWP~ID~ALR~AA~~R~V~VRlLI 140 (177)
T PF13918_consen 83 DLDAILSVIDSAKKFIYISVMDYLPTSRY-SK-PNRYWPVIDDALRRAAIERGVKVRLLI 140 (177)
T ss_pred HHHHHHHHHHhHhheEEEEEeecCCeeec-CC-CCCcchhHHHHHHHHHHHcCCeEEEEE
Confidence 37899999999999999999988884422 22 1235678999999987 8999999998
No 180
>PLN02866 phospholipase D
Probab=97.38 E-value=0.0005 Score=87.74 Aligned_cols=61 Identities=18% Similarity=0.267 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhhccEEEEEEeEeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEec
Q 001130 840 SIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIP 907 (1148)
Q Consensus 840 sI~~Ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP 907 (1148)
....+++++|++||++|||+.=.|-+..+.+... ...++..+...|.+| |++||+|+||+=
T Consensus 344 dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~-----~D~~g~RL~~lL~rK--AkrGVkVrVLLy 404 (1068)
T PLN02866 344 AAFEAIASAIENAKSEIFITGWWLCPELYLRRPF-----HDHESSRLDSLLEAK--AKQGVQIYILLY 404 (1068)
T ss_pred HHHHHHHHHHHhcccEEEEEEccCCceEEEEecC-----CCchHHHHHHHHHHH--HHCCCEEEEEEE
Confidence 6789999999999999999653333222211100 011245566666654 678999999853
No 181
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.35 E-value=0.00013 Score=91.85 Aligned_cols=106 Identities=20% Similarity=0.258 Sum_probs=82.1
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEeeeeeeCCCCCeeceEEEEE-
Q 001130 343 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVP- 417 (1148)
Q Consensus 343 ~Ll~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~RTkvi~nt~NPvWNE~F~f~- 417 (1148)
-.-.|+|.|-|.-||+|.-.. .|. .+||||+..+-. +...||||+++|.||.+||.....
T Consensus 1520 sY~~~~LtImV~H~K~L~~Lq-dg~--------------~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g 1584 (1639)
T KOG0905|consen 1520 SYNNGTLTIMVMHAKGLALLQ-DGQ--------------DPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDG 1584 (1639)
T ss_pred EEcCceEEEEhhhhccccccc-CCC--------------CCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecC
Confidence 345789999999999996321 122 289999999943 333599999999999999987654
Q ss_pred --ecCC-CceEEEEEEEccC-CCCcceeeEEEeceeeccCCcccceeeec
Q 001130 418 --VAHS-AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1148)
Q Consensus 418 --v~~~-~~~L~~~V~D~D~-~~ddfIG~v~IpL~eL~~G~~~d~W~pL~ 463 (1148)
.... .+.|.+.||..+. ..+.|+|.++|+|.++.......+||.|-
T Consensus 1585 ~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1585 FPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred Cchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeecc
Confidence 3323 3789999998776 55889999999999888665556999993
No 182
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.31 E-value=0.00013 Score=91.08 Aligned_cols=120 Identities=20% Similarity=0.247 Sum_probs=91.1
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEE-eeeeeeCCCCCeeceEEEEEecCC-CceEE
Q 001130 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVG-RTFVISNSEDPVWQQHFYVPVAHS-AAEVH 426 (1148)
Q Consensus 349 L~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~-RTkvi~nt~NPvWNE~F~f~v~~~-~~~L~ 426 (1148)
.+|.|++|-+|...|.+|. +||||+|.++++... ++..+.+|+||++++-|.+.+.-+ +..+.
T Consensus 615 vrVyvv~A~~L~p~D~ng~---------------adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~ 679 (1105)
T KOG1326|consen 615 VRVYVVEAFSLQPSDGNGD---------------ADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLI 679 (1105)
T ss_pred EEEEEEEeeeccccCCCCC---------------cCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcce
Confidence 7899999999999999887 899999999998753 788899999999999999988766 47799
Q ss_pred EEEEEccCCC-CcceeeEEEeceeeccCCcccceeeeccC-CCCCCCCCCcEEEEEEEeccccccccc
Q 001130 427 FFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVLNG-SGKPCKPGATLTLSIQYTPMERLSFYH 492 (1148)
Q Consensus 427 ~~V~D~D~~~-ddfIG~v~IpL~eL~~G~~~d~W~pL~~~-~Gk~~~~~g~L~L~l~f~p~~~~~~y~ 492 (1148)
++|+|+|..+ |+.||++.|.++ .+|+...+. .|.. ..-......+++.++.....|.
T Consensus 680 v~vyd~D~~~~d~~iget~iDLE--------nR~~T~~~a~cgla-q~y~v~g~n~W~d~~~ps~iL~ 738 (1105)
T KOG1326|consen 680 VEVYDHDLEAQDEKIGETTIDLE--------NRWLTRHRARCGLA-QTYCVSGANIWRDRMDPSQILK 738 (1105)
T ss_pred eEEEEeecccccchhhceehhhh--------hcccCcCCcccCcc-ceeeeeccccccCccCHHHHHH
Confidence 9999999955 899999999875 256655543 3332 2223444455555554444443
No 183
>PLN02964 phosphatidylserine decarboxylase
Probab=97.29 E-value=0.00022 Score=88.29 Aligned_cols=102 Identities=15% Similarity=0.240 Sum_probs=78.7
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCC-c
Q 001130 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA-A 423 (1148)
Q Consensus 345 l~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~-~ 423 (1148)
..|.+.|+|++|+ |++ .|+|..+-.-|.++.||.+.++|.||+|||+..|.|.... .
T Consensus 52 ~~~~~~~~~~~~~----~~~------------------~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~ 109 (644)
T PLN02964 52 FSGIALLTLVGAE----MKF------------------KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPH 109 (644)
T ss_pred ccCeEEEEeehhh----hcc------------------CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcc
Confidence 4578999999998 443 4887665554555569999999999999999998886554 5
Q ss_pred eEEEEEEEccC-CCCcceeeEEEeceeeccCCccc--ceeeeccCCCC
Q 001130 424 EVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVE--GTYPVLNGSGK 468 (1148)
Q Consensus 424 ~L~~~V~D~D~-~~ddfIG~v~IpL~eL~~G~~~d--~W~pL~~~~Gk 468 (1148)
..+|.|+|++. ..++++|.+.+++.++...+..+ .-|.+++++|.
T Consensus 110 ~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgd 157 (644)
T PLN02964 110 LARISVFETNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSS 157 (644)
T ss_pred eEEEEEEecCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCC
Confidence 56999999998 56899999999998887554322 23778888765
No 184
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.00047 Score=77.51 Aligned_cols=98 Identities=19% Similarity=0.223 Sum_probs=75.8
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEeeeeeeCCCCCeeceEEEEEecCCC-
Q 001130 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHSA- 422 (1148)
Q Consensus 348 tL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~RTkvi~nt~NPvWNE~F~f~v~~~~- 422 (1148)
-|.|+++.+..|..+|.++. +||||.+.+.. +..+||++.+++.||++||+|.|.+.+..
T Consensus 234 ~l~vt~iRc~~l~ssDsng~---------------sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdL 298 (362)
T KOG1013|consen 234 GLIVTIIRCSHLASSDSNGY---------------SDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDL 298 (362)
T ss_pred ceEEEEEEeeeeeccccCCC---------------CCccceeecCCCcchhhcccCcchhccCCccccccccccCCccch
Confidence 48999999999999998887 99999998853 22359999999999999999999876542
Q ss_pred --ceEEEEEEEccCC-CCcceeeEEEeceeeccCCcccceeee
Q 001130 423 --AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1148)
Q Consensus 423 --~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G~~~d~W~pL 462 (1148)
..+.|.|||++.- +.+++|-+..-. ...+....+|+..
T Consensus 299 a~~kv~lsvgd~~~G~s~d~~GG~~~g~--~rr~~v~~h~gr~ 339 (362)
T KOG1013|consen 299 AYKKVALSVGDYDIGKSNDSIGGSMLGG--YRRGEVHKHWGRC 339 (362)
T ss_pred hcceEEEeecccCCCcCccCCCcccccc--cccchhhcCcccc
Confidence 6789999999984 688888755443 2334444555543
No 185
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=97.04 E-value=0.00053 Score=50.52 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=22.5
Q ss_pred ccccceEEEEcCCCCCCCccEEEEECCccCCCC
Q 001130 663 YTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDG 695 (1148)
Q Consensus 663 ~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dg 695 (1148)
.++|+|++|||++ .+||||.|++..
T Consensus 3 ~~~H~K~~v~D~~--------~~~iGs~N~~~~ 27 (28)
T smart00155 3 GVLHTKLMIVDDE--------IAYIGSANLDGR 27 (28)
T ss_pred CcEEeEEEEEcCC--------EEEEeCccCCCC
Confidence 4799999999996 999999999874
No 186
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=96.99 E-value=0.0035 Score=70.38 Aligned_cols=160 Identities=19% Similarity=0.231 Sum_probs=95.0
Q ss_pred CeeEecccccCCCCCCCceeecCCCccchhHHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHHhh
Q 001130 515 GKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKS 594 (1148)
Q Consensus 515 n~V~ly~dg~~~~~~~p~i~l~~g~~y~~~~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA 594 (1148)
.+|++|..- |..+.|.| =+.+-+.|.+|++-|-|..=. +.| ..-|.|||.++-
T Consensus 119 Tr~~vy~qP--p~~~~p~I-------------KE~vR~~I~~A~kVIAIVMD~-------FTD-----~dIf~DLleAa~ 171 (284)
T PF07894_consen 119 TRATVYFQP--PKDGQPHI-------------KEVVRRMIQQAQKVIAIVMDV-------FTD-----VDIFCDLLEAAN 171 (284)
T ss_pred ceEEEEeCC--CCCCCCCH-------------HHHHHHHHHHhcceeEEEeec-------ccc-----HHHHHHHHHHHH
Confidence 689998764 22333444 367888899999999987643 333 256777777766
Q ss_pred hcCCcEEEEEecCCCcccccccccccccccccHHHHHHhhcCCcEEEEccCcccccccccccccccccccccceEEEEcC
Q 001130 595 QEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDA 674 (1148)
Q Consensus 595 ~rGVkVrILVwD~~~s~~~~g~k~~g~m~t~~~et~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~ 674 (1148)
+|||-||||+ |......++.. ..-+.- .... -.|++|+..... .+.......+-..-++|+++||+
T Consensus 172 kR~VpVYiLL-D~~~~~~Fl~M--c~~~~v----~~~~--~~nmrVRsv~G~-----~y~~rsg~k~~G~~~eKF~lvD~ 237 (284)
T PF07894_consen 172 KRGVPVYILL-DEQNLPHFLEM--CEKLGV----NLQH--LKNMRVRSVTGC-----TYYSRSGKKFKGQLKEKFMLVDG 237 (284)
T ss_pred hcCCcEEEEe-chhcChHHHHH--HHHCCC----Chhh--cCCeEEEEecCC-----eeecCCCCeeeCcccceeEEEec
Confidence 9999999998 87654322110 000000 0111 234454432110 01000011234578999999999
Q ss_pred CCCCCCccEEEEECCccCCCCCCCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCHHHHHHHHHHHH
Q 001130 675 DAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEE 754 (1148)
Q Consensus 675 ~~~~~~r~~vAFVGGiDL~dgRwDt~~H~l~d~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GPaa~Dl~~~F~q 754 (1148)
+ .+..|..-+++--+ .-| +-+-..+.|.+|....+-|..
T Consensus 238 ~--------~V~~GSYSFtWs~~--~~~-------------------------------r~~~~~~tGq~Ve~FD~EFR~ 276 (284)
T PF07894_consen 238 D--------KVISGSYSFTWSSS--RVH-------------------------------RNLVTVLTGQIVESFDEEFRE 276 (284)
T ss_pred c--------cccccccceeeccc--ccc-------------------------------cceeEEEeccccchHhHHHHH
Confidence 6 77888876665311 111 235678999999998888876
Q ss_pred HH
Q 001130 755 RW 756 (1148)
Q Consensus 755 rW 756 (1148)
-.
T Consensus 277 Ly 278 (284)
T PF07894_consen 277 LY 278 (284)
T ss_pred HH
Confidence 54
No 187
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.0017 Score=74.21 Aligned_cols=127 Identities=17% Similarity=0.193 Sum_probs=91.1
Q ss_pred CCcccccC---CCCCcceeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC-E---EEEeee
Q 001130 328 QNMQIVPS---TKGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-A---VVGRTF 400 (1148)
Q Consensus 328 ~g~q~Va~---q~~~~~~~Ll~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g-~---~~~RTk 400 (1148)
+|-|.-+. +.-...++=-.|.|+|.|++|++|..+...+. .++|||+|.+-+ . ...+||
T Consensus 247 VgRq~la~P~mg~iq~~~~d~~g~l~vEii~ar~l~~k~~~k~--------------~~apyVkVYlL~~g~c~ak~ktk 312 (405)
T KOG2060|consen 247 VGRQTLAAPNMGDIQIALMDSKGDLEVEIIRARGLVVKPGSKS--------------LPAPYVKVYLLENGFCIAKKKTK 312 (405)
T ss_pred hhhhhhcCcccccchhhhhcccCceeEEEEecccccccCCccc--------------ccCceeEEEEcCCCceecccccc
Confidence 55555443 22223333445789999999999975543221 289999999843 1 224899
Q ss_pred eeeCCCCCeeceEEEEEecCCCceEEEEEEE-ccC-CCCcceeeEEEeceeeccCC-cccceeeeccCCCC
Q 001130 401 VISNSEDPVWQQHFYVPVAHSAAEVHFFVKD-SDV-VGSELIGTVAIPVEQIYSGG-KVEGTYPVLNGSGK 468 (1148)
Q Consensus 401 vi~nt~NPvWNE~F~f~v~~~~~~L~~~V~D-~D~-~~ddfIG~v~IpL~eL~~G~-~~d~W~pL~~~~Gk 468 (1148)
...+|..|.+-++..|.-.-+...|.++||- +.. ..+.|+|.+.|-+.+|-... ...+||+|+....+
T Consensus 313 ~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgsssl 383 (405)
T KOG2060|consen 313 SARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSSSL 383 (405)
T ss_pred cccccCchhhhhhhhhccCCCccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCCccC
Confidence 9999999988888888877677889999984 333 34679999999999998664 66799999865443
No 188
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=96.38 E-value=0.33 Score=56.20 Aligned_cols=137 Identities=19% Similarity=0.207 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHhc-----cceEEEEeeccceeeEEeCCCCchHHHHHHHHHHhhhcCCcEEEEEecCCCcccccccccc
Q 001130 545 KCWYDICNAISQAQ-----RLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMD 619 (1148)
Q Consensus 545 ~~f~al~eAI~~Ar-----~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILVwD~~~s~~~~g~k~~ 619 (1148)
+.|+.+++-|++|- .+|.|+-| |-+ ....|.++|.+||+.|-+|.++| . ...+ .+
T Consensus 18 ~sf~~vv~fl~eAA~DP~V~aIk~TLY---------R~a---~~S~iv~aLi~AA~nGK~Vtv~v-E-LkAR------FD 77 (352)
T PF13090_consen 18 ESFDPVVDFLREAAEDPDVLAIKITLY---------RVA---SNSPIVNALIEAAENGKQVTVLV-E-LKAR------FD 77 (352)
T ss_dssp B-TCHHHHHHHHHCC-TTEEEEEEEES---------SS----TT-HHHHHHHHHHHTT-EEEEEE-S-TTSS------ST
T ss_pred cccHHHHHHHHHHhcCCCccEEEEEEE---------ecC---CCCHHHHHHHHHHHcCCEEEEEE-E-Eecc------cc
Confidence 57888999999884 46777766 433 34789999999999999999998 2 1111 11
Q ss_pred cccccccHHHHHHhhcCCcEEEEccCcccccccccccccccccccccceEEEEcCCCCCCCccEEEEECCccCCCCCCCC
Q 001130 620 GVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDN 699 (1148)
Q Consensus 620 g~m~t~~~et~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt 699 (1148)
... +-.+.+.|+.+|++|..--+ .+--|-|+++|=-+..+ +-+..+++|--|....
T Consensus 78 Ee~---Ni~Wa~~Le~aGv~ViyG~~----------------glKvHaK~~lI~R~e~~-~~~~Y~hlgTGNyNe~---- 133 (352)
T PF13090_consen 78 EEN---NIHWAKRLEEAGVHVIYGVP----------------GLKVHAKICLIVRREGG-GLRRYAHLGTGNYNEK---- 133 (352)
T ss_dssp TCC---CCCCCHHHHHCT-EEEE--T----------------T-EE--EEEEEEEEETT-EEEEEEEEESS-SSTT----
T ss_pred HHH---HhHHHhhHHhcCeEEEcCCC----------------ChhheeeEEEEEEEeCC-cEEEEEEEcCCCcCcc----
Confidence 110 01245668899999976321 13469999998654222 2345777776665442
Q ss_pred CCCCcccccccccCCCCCCCcccCCCCCCCCCCeeeeeeEEcCH-HHHHHHHHHHH
Q 001130 700 PHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGP-AAYDVLTNFEE 754 (1148)
Q Consensus 700 ~~H~l~d~l~~~~~~Dy~np~~~~~~~~~pr~PWHDv~vrI~GP-aa~Dl~~~F~q 754 (1148)
+ ..-+-|+.+.-.-+ .+.|+...|..
T Consensus 134 ----------------------------T-Ar~YtD~~l~Ta~~~i~~D~~~~F~~ 160 (352)
T PF13090_consen 134 ----------------------------T-ARIYTDLSLFTADPEIGADVAKLFNY 160 (352)
T ss_dssp ----------------------------H-CCCEEEEEEEE--HHHHHHHHHHHHH
T ss_pred ----------------------------c-hhheecceeecCCHHHHHHHHHHHHH
Confidence 0 12356888877776 58999999853
No 189
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=95.91 E-value=0.032 Score=62.90 Aligned_cols=131 Identities=20% Similarity=0.214 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhhccEEEEEEeEeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCcch
Q 001130 840 SIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAAT 919 (1148)
Q Consensus 840 sI~~Ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p~~~s~ 919 (1148)
+|.+...++|++|++-|=|..=-|+. .+|..-|.+|.. +|+|-||||+... +.
T Consensus 134 ~IKE~vR~~I~~A~kVIAIVMD~FTD------------------~dIf~DLleAa~-kR~VpVYiLLD~~--------~~ 186 (284)
T PF07894_consen 134 HIKEVVRRMIQQAQKVIAIVMDVFTD------------------VDIFCDLLEAAN-KRGVPVYILLDEQ--------NL 186 (284)
T ss_pred CHHHHHHHHHHHhcceeEEEeecccc------------------HHHHHHHHHHHH-hcCCcEEEEechh--------cC
Confidence 79999999999999999999988873 467777777642 7899999999862 22
Q ss_pred hHHHHHHHHhHhhHHHHHHHHHHHcCCceeecccccccccccCCcccccccCCCCCCCCCCCCchhhhhcccCCcceeee
Q 001130 920 QRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVH 999 (1148)
Q Consensus 920 ~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~L~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~IYVH 999 (1148)
+.++ +.-.+.++.... +-++|-|-.- |.. -.++..+.+.+-++
T Consensus 187 ~~Fl---------------~Mc~~~~v~~~~-------~~nmrVRsv~-G~~--------------y~~rsg~k~~G~~~ 229 (284)
T PF07894_consen 187 PHFL---------------EMCEKLGVNLQH-------LKNMRVRSVT-GCT--------------YYSRSGKKFKGQLK 229 (284)
T ss_pred hHHH---------------HHHHHCCCChhh-------cCCeEEEEec-CCe--------------eecCCCCeeeCccc
Confidence 2222 223334443321 1111111110 000 00111223456799
Q ss_pred eEEEEEeCeEEEEcccccccccCCCCCCcceEEEEeC
Q 001130 1000 SKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQ 1036 (1148)
Q Consensus 1000 SKlmIVDD~~viIGSANLN~RSm~G~~DsEiav~i~d 1036 (1148)
.|.||||.+.|+-||--+..-|-. .|.-+..++..
T Consensus 230 eKF~lvD~~~V~~GSYSFtWs~~~--~~r~~~~~~tG 264 (284)
T PF07894_consen 230 EKFMLVDGDKVISGSYSFTWSSSR--VHRNLVTVLTG 264 (284)
T ss_pred ceeEEEecccccccccceeecccc--cccceeEEEec
Confidence 999999999999999999988876 66667666543
No 190
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=95.82 E-value=0.0031 Score=79.21 Aligned_cols=99 Identities=23% Similarity=0.287 Sum_probs=76.4
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEec---------
Q 001130 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVA--------- 419 (1148)
Q Consensus 349 L~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~--------- 419 (1148)
|++.|+.|+.|..+|..+. +|||+.|.+.++.. .|-++.+|+||.||++..|.-.
T Consensus 208 lR~yiyQar~L~a~dk~~~---------------sdp~a~v~f~~qs~-~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~ 271 (1105)
T KOG1326|consen 208 LRSYIYQARALGAPDKDDE---------------SDPDAAVEFCGQSK-ETEVVPGTLNPTWDQTIIFDEVEIYGEAHLV 271 (1105)
T ss_pred hHHHHHHHHhhcCCCcccC---------------CCchhhhhcccccc-eeEeecCcCCCCccceeeccceeecCccchh
Confidence 7788888888887776554 89999999998885 9999999999999999988621
Q ss_pred -CCCceEEEEEEEccCCC-CcceeeEEEeceeeccCCcccceeeecc
Q 001130 420 -HSAAEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVLN 464 (1148)
Q Consensus 420 -~~~~~L~~~V~D~D~~~-ddfIG~v~IpL~eL~~G~~~d~W~pL~~ 464 (1148)
..-..+.|+|+|.|..+ ++|+|+......-+.. ...-.|+++..
T Consensus 272 ~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~r 317 (1105)
T KOG1326|consen 272 LKNPPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTMR 317 (1105)
T ss_pred hcCCCeEEEEeehhhhhchHHhhcccccceEEEec-CCccceEEeec
Confidence 11246789999999854 8999998775443333 23457999963
No 191
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=95.80 E-value=0.018 Score=69.48 Aligned_cols=96 Identities=27% Similarity=0.444 Sum_probs=66.5
Q ss_pred EeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEEC---C--EEEEeeeeeeCCCCCeeceEEEEEe-----cCCCce
Q 001130 355 SAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA---G--AVVGRTFVISNSEDPVWQQHFYVPV-----AHSAAE 424 (1148)
Q Consensus 355 eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~---g--~~~~RTkvi~nt~NPvWNE~F~f~v-----~~~~~~ 424 (1148)
+|++|.++|++++ +|||..+.-- + ..+.||.+++++++|.|-+ |.+.+ .+....
T Consensus 144 ~~~~ld~kd~f~k---------------sd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~ 207 (529)
T KOG1327|consen 144 RAKNLDPKDFFSK---------------SDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRP 207 (529)
T ss_pred eeeecCccccccc---------------CCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCc
Confidence 3455566666665 8999877542 2 3446999999999999986 44443 233578
Q ss_pred EEEEEEEccCCCC-cceeeEEEeceeeccCCcccceeeeccCCC
Q 001130 425 VHFFVKDSDVVGS-ELIGTVAIPVEQIYSGGKVEGTYPVLNGSG 467 (1148)
Q Consensus 425 L~~~V~D~D~~~d-dfIG~v~IpL~eL~~G~~~d~W~pL~~~~G 467 (1148)
+.+.|+|+|..++ ++||++..+++++.. ......+.+.++++
T Consensus 208 ~~i~~~d~~~~~~~~~ig~~~tt~~~~~~-~~~~~~~~~~~~~~ 250 (529)
T KOG1327|consen 208 IQIECYDYDSNGKHDLIGKFQTTLSELQE-PGSPNQIMLINPKK 250 (529)
T ss_pred eEEEEeccCCCCCcCceeEecccHHHhcc-cCCcccccccChhh
Confidence 8999999998665 999999999998873 22223344544443
No 192
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=95.75 E-value=0.85 Score=56.32 Aligned_cols=96 Identities=19% Similarity=0.209 Sum_probs=64.4
Q ss_pred cchhHHHHHHHHHHHHhcc-----ceEEEEeeccceeeEEeCCCCchHHHHHHHHHHhhhcCCcEEEEEecCCCcccccc
Q 001130 541 YVHGKCWYDICNAISQAQR-----LIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILG 615 (1148)
Q Consensus 541 y~~~~~f~al~eAI~~Ar~-----sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILVwD~~~s~~~~g 615 (1148)
|.|=+.|+.+.+.|++|-. .|-++ |.|.+. ...|.++|.+||+.|-+|.+|| . ...
T Consensus 348 hHPYeSF~~Vv~fl~qAA~DP~VLAIKqT---------LYRt~~---dSpIV~ALi~AA~nGKqVtvlV-E-LkA----- 408 (696)
T COG0855 348 HHPYESFEPVVEFLRQAAADPDVLAIKQT---------LYRTSK---DSPIVRALIDAAENGKQVTVLV-E-LKA----- 408 (696)
T ss_pred ECchhhhHHHHHHHHHhhcCCCeEEEEEE---------EEecCC---CCHHHHHHHHHHHcCCeEEEEE-E-Ehh-----
Confidence 3344789999999999965 23333 556543 4689999999999999999998 1 100
Q ss_pred cccccccccccHHHHHHhhcCCcEEEEccCcccccccccccccccccccccceEEEEcCC
Q 001130 616 YKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDAD 675 (1148)
Q Consensus 616 ~k~~g~m~t~~~et~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~ 675 (1148)
..+.. .+-.+.+.|+.+||+|++-- .-+--|.||++|=-+
T Consensus 409 -RFDEE---~NI~WAk~LE~AGvhVvyG~----------------~glKtHAKm~lVvRr 448 (696)
T COG0855 409 -RFDEE---ANIHWAKRLERAGVHVVYGV----------------VGLKTHAKMLLVVRR 448 (696)
T ss_pred -hcChh---hhhHHHHHHHhCCcEEEecc----------------cceeeeeeEEEEEEe
Confidence 00100 11145677889999998631 124579999888554
No 193
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=95.51 E-value=0.011 Score=55.14 Aligned_cols=95 Identities=12% Similarity=0.192 Sum_probs=66.3
Q ss_pred EEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEE--EEECCEEEEeeeeeeCCCCCeeceEEEEEecCC---CceE
Q 001130 351 IWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVT--IAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS---AAEV 425 (1148)
Q Consensus 351 VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~--V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~---~~~L 425 (1148)
|||+.+++|.=....|. .+.-|++ +.+.+....||.+.+...||+++|+|.|.+.-. .-.|
T Consensus 3 itv~~c~d~s~~~~~~e--------------~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L 68 (103)
T cd08684 3 ITVLKCKDLSWPSSCGE--------------NPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRL 68 (103)
T ss_pred EEEEEecccccccccCc--------------CCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEE
Confidence 78889998863332232 1223443 444555556999999999999999999987543 3456
Q ss_pred EEEEEEccCCCCcceeeEEEeceeeccCCcccceee
Q 001130 426 HFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYP 461 (1148)
Q Consensus 426 ~~~V~D~D~~~ddfIG~v~IpL~eL~~G~~~d~W~p 461 (1148)
.|.|.. .+-+.+.||.+.+.+.++-. +..+.|.+
T Consensus 69 ~fsv~~-~~~RKe~iG~~sL~l~s~ge-eE~~HW~e 102 (103)
T cd08684 69 VFKIQT-QTPRKRTIGECSLSLRTLST-QETDHWLE 102 (103)
T ss_pred EEEeec-cCCccceeeEEEeecccCCH-HHhhhhhc
Confidence 777776 44567899999999987764 34567765
No 194
>PF13918 PLDc_3: PLD-like domain
Probab=95.45 E-value=0.13 Score=54.37 Aligned_cols=55 Identities=24% Similarity=0.410 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhccEEEEEEeEeecCC------CCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCC
Q 001130 842 HTAYVKAIRSAQHFIYIENQYFIGSS------YNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWP 910 (1148)
Q Consensus 842 ~~Ayl~aI~~Ak~fIYIENQYFi~~~------~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~P 910 (1148)
.+|+++.|..|++||||+=--++|.. ..|+ .|-.+|.+|+ -.|||+|++++..|.
T Consensus 84 ldAIl~~I~~A~~fI~IsVMdY~P~~~~~~~~~YWP-------------~ID~ALR~AA-~~R~V~VRlLIS~W~ 144 (177)
T PF13918_consen 84 LDAILSVIDSAKKFIYISVMDYLPTSRYSKPNRYWP-------------VIDDALRRAA-IERGVKVRLLISCWK 144 (177)
T ss_pred HHHHHHHHHhHhheEEEEEeecCCeeecCCCCCcch-------------hHHHHHHHHH-HHcCCeEEEEEeecC
Confidence 58999999999999999987777643 1354 2333333322 268999999999985
No 195
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=95.35 E-value=0.015 Score=67.33 Aligned_cols=118 Identities=17% Similarity=0.211 Sum_probs=84.8
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEeeeeeeCCCCCeeceEEEEEecCC--
Q 001130 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS-- 421 (1148)
Q Consensus 348 tL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~RTkvi~nt~NPvWNE~F~f~v~~~-- 421 (1148)
.|++.|.++.+++-..- ..| .|-||++.+.- ....+|.||++|..|.++|.|.+.+...
T Consensus 368 elel~ivrg~~~pvp~g-p~h--------------ld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~ 432 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPGG-PMH--------------LDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPG 432 (523)
T ss_pred HhHHHHhhcccCCCCCC-chh--------------HHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCc
Confidence 36677777776653221 111 46777777632 2224999999999999999999987641
Q ss_pred ----------CceEEEEEEEccC--CCCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEEEe
Q 001130 422 ----------AAEVHFFVKDSDV--VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1148)
Q Consensus 422 ----------~~~L~~~V~D~D~--~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~ 483 (1148)
.--+.|+|+.+.. -+|.++|.+.|.++.|.....++..++|. +|++. .+|+|.++++..
T Consensus 433 ~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~--DGRK~-vGGkLevKvRiR 503 (523)
T KOG3837|consen 433 LNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLK--DGRKA-VGGKLEVKVRIR 503 (523)
T ss_pred ccHHHHHHHHhcCeeEEEeeccccccccceeceeeeeehhhhcccchhhceecc--ccccc-cCCeeEEEEEEe
Confidence 1247899998876 35889999999999888777778889995 45543 457888888865
No 196
>PLN02352 phospholipase D epsilon
Probab=95.27 E-value=0.062 Score=67.83 Aligned_cols=61 Identities=21% Similarity=0.256 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHhccceEEEEeeccceeeEEeCCC-----CchHHHHHHHHHHh--hhcCCcEEEEE
Q 001130 544 GKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDAS-----PALDCTLGELLRSK--SQEGVRVLLLV 604 (1148)
Q Consensus 544 ~~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~-----~~~g~~L~dlL~~k--A~rGVkVrILV 604 (1148)
.+...+.++||++|||+|||+.=-|-...+.+..+. .-.+..|.+.|.+| +.++-+|+|++
T Consensus 452 rSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~kI~~kir~~e~f~V~IVi 519 (758)
T PLN02352 452 RSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVYILI 519 (758)
T ss_pred hHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 456899999999999999998532222222232211 12456777777776 55678888887
No 197
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.00 E-value=0.21 Score=58.28 Aligned_cols=120 Identities=18% Similarity=0.195 Sum_probs=91.2
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCC-------
Q 001130 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS------- 421 (1148)
Q Consensus 349 L~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~------- 421 (1148)
+-|.|++|+|.+... + -.-.|...+++... .|-.+..+..|.||.+..+.+...
T Consensus 2 ivl~i~egr~F~~~~---~---------------~~~vv~a~~ng~~l-~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~ 62 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---R---------------HPIVVEAKFNGESL-ETDPVPHTESPQFNTELAWECDRKALKQHRL 62 (340)
T ss_pred EEEEEecccCCCCCC---C---------------ccEEEEEEeCCcee-eecCCCCCCCceeecceeeeccHHHHHHhhc
Confidence 568899999998541 1 35688889999987 888888899999999999987532
Q ss_pred -CceEEEEEEEccC--CCCcceeeEEEeceee---ccC--CcccceeeeccCCCCCCCCCCcEEEEEEEecccc
Q 001130 422 -AAEVHFFVKDSDV--VGSELIGTVAIPVEQI---YSG--GKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMER 487 (1148)
Q Consensus 422 -~~~L~~~V~D~D~--~~ddfIG~v~IpL~eL---~~G--~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~p~~~ 487 (1148)
...|+++++.-|. ...+.||.+.++|..+ ..+ .....||+|++.+++..+...+|.|.|.......
T Consensus 63 ~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 63 QRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred cCCceEEEEEEecCCCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 2568999998873 4578999999999988 555 4567899999884443333357888888765544
No 198
>cd00137 PI-PLCc Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic a
Probab=94.95 E-value=0.0046 Score=70.06 Aligned_cols=56 Identities=18% Similarity=0.118 Sum_probs=47.0
Q ss_pred CCcccCCCCCcc-cCCcccCCCC---------cCCCCCCcccCCCCCCCCCcccccC--CCCCcceeeeceE
Q 001130 289 GGFYGYPNDSFS-SYPERAYLGM---------IDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGN 348 (1148)
Q Consensus 289 ~~~~~~~~~~~~-~~~~~~~~~r---------~~ssn~~p~~~~~~~~~~g~q~Va~--q~~~~~~~Ll~Gt 348 (1148)
.+|..|+++.|+ +| |++.| +|||||+|..+|...+ .||||||+ |+..+.+.|..|.
T Consensus 203 ~~~~~~n~~~l~~ny---psgtr~~~~~~~~a~~snn~~p~~~w~~~~-~g~qiValdfqt~~~~~~ln~~~ 270 (274)
T cd00137 203 VQFVDYNKNQLSRNY---PSGTSGGTAWYYYAMDSNNYMPQMFWNANP-AGCGIVILDFQTMDLPMQQYMAV 270 (274)
T ss_pred HHHHhcCcceEEEEc---cCccCCCCcchhhHhhcCccChHHHhcccc-CCceEEEeeCcCCCccHHHHhhh
Confidence 457888888999 99 99999 9999999998888543 49999999 8888877766554
No 199
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=94.86 E-value=0.42 Score=48.35 Aligned_cols=118 Identities=22% Similarity=0.331 Sum_probs=79.1
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEE--EEeeeeeeC-CCCCeeceEEEEEecC---C-
Q 001130 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAV--VGRTFVISN-SEDPVWQQHFYVPVAH---S- 421 (1148)
Q Consensus 349 L~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~--~~RTkvi~n-t~NPvWNE~F~f~v~~---~- 421 (1148)
+.|+|.+..+++..+ .-.||+...++.. .+.|..... +-.-.|||+|.+.+.- .
T Consensus 9 ~~l~i~~l~~~p~~~-------------------~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k 69 (143)
T PF10358_consen 9 FDLTIHELENLPSSN-------------------GKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKK 69 (143)
T ss_pred EEEEEEEeECcCCCC-------------------CEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCC
Confidence 789999999998511 2346666666554 334544333 6667999999988631 1
Q ss_pred -----CceEEEEEEEccCCCC-cceeeEEEeceeeccC--CcccceeeeccCCCCCCCCCCcEEEEEEEecccccc
Q 001130 422 -----AAEVHFFVKDSDVVGS-ELIGTVAIPVEQIYSG--GKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLS 489 (1148)
Q Consensus 422 -----~~~L~~~V~D~D~~~d-dfIG~v~IpL~eL~~G--~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~p~~~~~ 489 (1148)
...+.|.|+.....+. ..+|.+.|.|.+...- .....-++|... + +..+.|+|+|++.+...+.
T Consensus 70 ~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--~--~~~a~L~isi~~~~~~~~~ 141 (143)
T PF10358_consen 70 SKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--K--KSNATLSISISLSELREDP 141 (143)
T ss_pred CCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--C--CCCcEEEEEEEEEECccCC
Confidence 2457888988754444 5999999999999863 344556666433 1 2346899999988766543
No 200
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.76 E-value=0.16 Score=53.02 Aligned_cols=108 Identities=15% Similarity=0.194 Sum_probs=68.8
Q ss_pred eeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEEE---eeeeeeCCCCCeeceEEEE
Q 001130 342 VLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVG---RTFVISNSEDPVWQQHFYV 416 (1148)
Q Consensus 342 ~~Ll~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l--~g~~~~---RTkvi~nt~NPvWNE~F~f 416 (1148)
+|=+...++|+|++++++.-.+ .+|-||++.+ +++... .|+-+. ..++.|||-.+|
T Consensus 3 lwd~~~~~~v~i~~~~~~~~~~------------------~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~f 63 (158)
T cd08398 3 LWKINSNLRIKILCATYVNVND------------------IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDY 63 (158)
T ss_pred ceeCCCCeEEEEEeeccCCCCC------------------cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEc
Confidence 4455667999999999987321 1688998876 444331 344344 367999998888
Q ss_pred Eec--CC--CceEEEEEEEccCCC-----CcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEEEecc
Q 001130 417 PVA--HS--AAEVHFFVKDSDVVG-----SELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPM 485 (1148)
Q Consensus 417 ~v~--~~--~~~L~~~V~D~D~~~-----ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~p~ 485 (1148)
++. +. .+.|.|+||+....+ ...||.+.++ |++.+|.-. .|...|.|+-.+.
T Consensus 64 pI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~---------------LFd~~~~Lr--~G~~~L~lW~~~~ 124 (158)
T cd08398 64 DIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNIN---------------LFDYTDTLV--SGKMALNLWPVPH 124 (158)
T ss_pred ccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEE---------------EECCCChhh--CCCEEEEEEcCCc
Confidence 753 22 488999999865421 1346666555 444444322 3577888886544
No 201
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=93.90 E-value=0.22 Score=63.24 Aligned_cols=63 Identities=17% Similarity=0.214 Sum_probs=38.0
Q ss_pred CCCccchhHHHHHHHHHHHHhccceEEEEeeccceeeEEeCC-----CCchHHHHHHHHHHh--hhcCCcEEEEE
Q 001130 537 RGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDA-----SPALDCTLGELLRSK--SQEGVRVLLLV 604 (1148)
Q Consensus 537 ~g~~y~~~~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~-----~~~~g~~L~dlL~~k--A~rGVkVrILV 604 (1148)
.|........-.|-+.+|++|+|.|||+.=-| |-.-. ....+..|.+-+.+| |++--+|+|+|
T Consensus 558 ~g~~~~e~SIq~AYv~~Ir~a~hFIYIENQfF-----i~ss~~~~~~~n~v~~ela~rIv~a~ra~e~frVYIVI 627 (887)
T KOG1329|consen 558 GGINEIEDSIQNAYVKAIRNAEHFIYIENQFF-----IGSSFNWDSVLNKVGDELALRIVKAIRAGEKFRVYIVI 627 (887)
T ss_pred cCCCchHHHHHHHHHHHHHhccceEEEeeeeE-----EeeccCCCcccchHHHHHHHHHHHHHhcCCceEEEEEE
Confidence 34444444557889999999999999975211 21111 112334444444444 55668888887
No 202
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=93.42 E-value=0.14 Score=56.67 Aligned_cols=49 Identities=27% Similarity=0.282 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHHhhhcCCcEEEEEec
Q 001130 545 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWD 606 (1148)
Q Consensus 545 ~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILVwD 606 (1148)
...+.+.+.|++|+++|+|..|. ..-..|.+.|++|.+|||+|.|+++.
T Consensus 10 ~I~~~i~elI~~Ae~eI~is~~~-------------~~l~~l~~~L~~a~~rGV~V~li~~~ 58 (233)
T PF11495_consen 10 TILERIRELIENAESEIYISIPP-------------EFLEELRDELEEAVDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHC-SSEEEEEE-G-------------GGHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHhheEEEEEcCH-------------HHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 45789999999999999999982 13468999999999999999999965
No 203
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=92.95 E-value=1.3 Score=47.28 Aligned_cols=140 Identities=19% Similarity=0.282 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHhccceEEEEeeccceeeEEeCCCCchHHHHHHHHHHhhhcCCcEEEEEecCCCccccccccccccccc
Q 001130 545 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQT 624 (1148)
Q Consensus 545 ~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~kA~rGVkVrILVwD~~~s~~~~g~k~~g~m~t 624 (1148)
.....|.+.|+.|++...+.+| +-.++ -.-|.+.|..+.++||++|||- ++-... |
T Consensus 39 ~il~~Li~~l~k~~ef~IsVaF-------it~sG----~sll~~~L~d~~~Kgvkgkilt-s~Ylnf------------T 94 (198)
T COG3886 39 KILPRLIDELEKADEFEISVAF-------ITESG----LSLLFDLLLDLVNKGVKGKILT-SDYLNF------------T 94 (198)
T ss_pred hHHHHHHHHHhcCCeEEEEEEE-------eeCcc----HHHHHHHHHHHhcCCceEEEec-ccccCc------------c
Confidence 5688999999999998888877 33332 3677899999999999999995 432211 1
Q ss_pred ccHHHHHHhhcCCcEEEEccCcccccccccccccccccccccceEEEEcCCCCCCCccEEEEECCccCCCCCCCCCCCCc
Q 001130 625 HDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPL 704 (1148)
Q Consensus 625 ~~~et~~~l~~~gV~v~l~p~~~~~~~~~~~~~~~~~~~~HHQKiVVVD~~~~~~~r~~vAFVGGiDL~dgRwDt~~H~l 704 (1148)
+-...++.+.-.+|+|+++.-. ...+|-|-.|.-... ...|+||..||++.-.- ..|
T Consensus 95 dP~al~~Ll~~~nve~r~~~~~---------------~~~fH~KgYiFe~~~-----~~taiiGSsNlt~sALt-~n~-- 151 (198)
T COG3886 95 DPVALRKLLMLKNVELRVSTIG---------------SANFHTKGYIFEHNT-----GITAIIGSSNLTDSALT-VNE-- 151 (198)
T ss_pred CHHHHHHHHhhhccceEEEecC---------------ccccccceeEEEecc-----eEEEEEccchhhhhhcc-cCH--
Confidence 1112345555566888765321 235777776654321 25899999999997431 111
Q ss_pred ccccccccCCCCCCCcccCCCCCCCCCCee-eeeeEEcCHHHHHHHHHHHHHHHh
Q 001130 705 FRTLQTLHKDDYHNPTFTGNTTGCPREPWH-DLHSKIDGPAAYDVLTNFEERWRK 758 (1148)
Q Consensus 705 ~d~l~~~~~~Dy~np~~~~~~~~~pr~PWH-Dv~vrI~GPaa~Dl~~~F~qrWn~ 758 (1148)
-|- -+...-.|..|..+...|+..|..
T Consensus 152 ---------------------------Ewn~k~s~~~~g~i~~~~k~~f~r~~~~ 179 (198)
T COG3886 152 ---------------------------EWNLKVSSSKNGDIVKEVKVTFERQFQN 179 (198)
T ss_pred ---------------------------HHHhhhccccccchHHHHHHHHHHHHHh
Confidence 111 122334677899999999999983
No 204
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=92.89 E-value=0.53 Score=49.91 Aligned_cols=75 Identities=19% Similarity=0.291 Sum_probs=51.1
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEEE---eeeeeeCCCCCeeceEEEEE
Q 001130 343 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVG---RTFVISNSEDPVWQQHFYVP 417 (1148)
Q Consensus 343 ~Ll~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l--~g~~~~---RTkvi~nt~NPvWNE~F~f~ 417 (1148)
|=.+..++|+|+.+.+|.-.+ . ..+-||++.| +++... .|+.+.-+..+.|||.+.|+
T Consensus 4 w~~~~~f~i~i~~~~~~~~~~--~---------------~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~ 66 (173)
T cd08693 4 WDIEEKFSITLHKISNLNAAE--R---------------TMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFD 66 (173)
T ss_pred eccCCCEEEEEEEeccCccCC--C---------------CceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcc
Confidence 444556899999999997411 1 1567888765 454432 55555545779999988887
Q ss_pred ec--CC--CceEEEEEEEccC
Q 001130 418 VA--HS--AAEVHFFVKDSDV 434 (1148)
Q Consensus 418 v~--~~--~~~L~~~V~D~D~ 434 (1148)
+. +. .+.|.|+||+...
T Consensus 67 I~i~dLPr~ArLciti~~~~~ 87 (173)
T cd08693 67 INVCDLPRMARLCFAIYEVSK 87 (173)
T ss_pred cchhcCChhHeEEEEEEEecc
Confidence 53 22 4889999998653
No 205
>PLN02270 phospholipase D alpha
Probab=92.75 E-value=0.52 Score=60.07 Aligned_cols=62 Identities=19% Similarity=0.124 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHHHhccceEEEEeeccceeeEEeCC--------C-CchHHHHHHHHHHh--hhcCCcEEEEE
Q 001130 543 HGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDA--------S-PALDCTLGELLRSK--SQEGVRVLLLV 604 (1148)
Q Consensus 543 ~~~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~--------~-~~~g~~L~dlL~~k--A~rGVkVrILV 604 (1148)
..+...+.++||++||++|||+.=-|-....-+..+ . .-....|...|.+| +.++-+|+|++
T Consensus 497 ~rsI~~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIVi 569 (808)
T PLN02270 497 DRSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVV 569 (808)
T ss_pred hhHHHHHHHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence 346789999999999999999752222211111100 0 11345566666665 66789999987
No 206
>PLN03008 Phospholipase D delta
Probab=92.51 E-value=0.54 Score=60.06 Aligned_cols=61 Identities=18% Similarity=0.132 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHhccceEEEEeeccceeeEEeCCC-----CchHHHHHHHHHHh--hhcCCcEEEEE
Q 001130 544 GKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDAS-----PALDCTLGELLRSK--SQEGVRVLLLV 604 (1148)
Q Consensus 544 ~~~f~al~eAI~~Ar~sI~I~~W~~~p~i~L~rd~~-----~~~g~~L~dlL~~k--A~rGVkVrILV 604 (1148)
.....+.+++|++|||.|||+.=-|-...+.+.... .-.+..|...|.+| +.++-+|+|++
T Consensus 566 ~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IVi 633 (868)
T PLN03008 566 KSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVI 633 (868)
T ss_pred hhHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEE
Confidence 345789999999999999997632322222221110 12455677777666 56788899887
No 207
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=91.16 E-value=0.39 Score=54.19 Aligned_cols=122 Identities=15% Similarity=0.162 Sum_probs=77.9
Q ss_pred ceeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecC
Q 001130 341 KVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1148)
Q Consensus 341 ~~~Ll~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~ 420 (1148)
.+.-..|.|.+.+++++||+-..... .-+.+.||++.++.+-.+||.|-....-=.|.|+|++.+.
T Consensus 45 ~~~s~tGiL~~H~~~GRGLr~~p~~k-------------glt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv- 110 (442)
T KOG1452|consen 45 RLVSSTGILYFHAYNGRGLRMTPQQK-------------GLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVV- 110 (442)
T ss_pred eeecccceEEEEEecccccccChhcc-------------CceeeeeeeeeecccCccccccccCCCCccchhhceeecc-
Confidence 44557789999999999997432211 1237999999999877678887766677789999999876
Q ss_pred CCceEEEEEEEccCC-CCc--ceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEEEecc
Q 001130 421 SAAEVHFFVKDSDVV-GSE--LIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPM 485 (1148)
Q Consensus 421 ~~~~L~~~V~D~D~~-~dd--fIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~p~ 485 (1148)
....+.+-|+.|+.. ... ..| -|.+..+. ....++-+.|.- .+.|++-|+|.|...
T Consensus 111 ~~~vl~~lvySW~pq~RHKLC~~g--~l~~~~v~-rqspd~~~Al~l------ePrgq~~~r~~~~Dp 169 (442)
T KOG1452|consen 111 NIEVLHYLVYSWPPQRRHKLCHLG--LLEAFVVD-RQSPDRVVALYL------EPRGQPPLRLPLADP 169 (442)
T ss_pred cceeeeEEEeecCchhhccccccc--hhhhhhhh-hcCCcceeeeec------ccCCCCceecccCCh
Confidence 345788889988863 233 244 22222222 122233344421 233567777776544
No 208
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=90.58 E-value=2.2 Score=45.02 Aligned_cols=88 Identities=16% Similarity=0.280 Sum_probs=56.2
Q ss_pred eceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEEE---eeeeee--C--CCCCeeceEEE
Q 001130 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVG---RTFVIS--N--SEDPVWQQHFY 415 (1148)
Q Consensus 345 l~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l--~g~~~~---RTkvi~--n--t~NPvWNE~F~ 415 (1148)
....+.|+|.++.+++....... .|.||++.| +++... .|+... + ...+.|||...
T Consensus 6 v~~~~~i~v~~~h~~~~~~~~~~---------------~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~ 70 (171)
T cd04012 6 VTDLLSVTVSSLHRIPPTWVQSF---------------EDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIE 70 (171)
T ss_pred ccccEEEEEEEeecCChHHhhcc---------------ccEEEEEEEEECCEECcCceeccccccccCccccccccceEE
Confidence 44568999999999985432111 688998876 444432 343221 1 33578999888
Q ss_pred EEec--CC--CceEEEEEEEccCCC----------CcceeeEEEec
Q 001130 416 VPVA--HS--AAEVHFFVKDSDVVG----------SELIGTVAIPV 447 (1148)
Q Consensus 416 f~v~--~~--~~~L~~~V~D~D~~~----------ddfIG~v~IpL 447 (1148)
|++. +. ++.|.|+|++....+ ...||.+.++|
T Consensus 71 F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~L 116 (171)
T cd04012 71 FPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPL 116 (171)
T ss_pred CccchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEee
Confidence 8753 22 488999999866532 34666666554
No 209
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=90.05 E-value=2.3 Score=45.42 Aligned_cols=126 Identities=9% Similarity=0.017 Sum_probs=67.4
Q ss_pred eeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEE--EeeeeeeCCCCCeeceEEEEE
Q 001130 342 VLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVV--GRTFVISNSEDPVWQQHFYVP 417 (1148)
Q Consensus 342 ~~Ll~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l--~g~~~--~RTkvi~nt~NPvWNE~F~f~ 417 (1148)
+|=+...++|+|..+..+ +.+.... ..-||++.| ++... .+|+.+..+.++.|||-+.|+
T Consensus 5 lwdi~~~friki~~~~~~-~~~~~~~---------------~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~ 68 (178)
T cd08399 5 LWDCDRKFRVKILGIDIP-VLPRNTD---------------LTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFD 68 (178)
T ss_pred eEecCCCEEEEEEeeccc-CcCCCCc---------------eEEEEEEEEEECCeecccceeeccCCCCCccccccEECc
Confidence 344455688999888733 2221110 234666544 33322 156666667789999987777
Q ss_pred ec--CC--CceEEEEEEEccCCC--CcceeeEEEeceeeccCCcccce--eeeccCCCCCCCCCCcEEEEEEEecccc
Q 001130 418 VA--HS--AAEVHFFVKDSDVVG--SELIGTVAIPVEQIYSGGKVEGT--YPVLNGSGKPCKPGATLTLSIQYTPMER 487 (1148)
Q Consensus 418 v~--~~--~~~L~~~V~D~D~~~--ddfIG~v~IpL~eL~~G~~~d~W--~pL~~~~Gk~~~~~g~L~L~l~f~p~~~ 487 (1148)
+. +. .+.|.|+||+....+ ....|.- +.++-......-+| +.|+|.+|.-. .|...|.++-.|...
T Consensus 69 I~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~wvn~~LFD~~~~Lr--~G~~~L~~W~~~~~~ 142 (178)
T cd08399 69 IKIKDLPKGALLNLQIYCGKAPALSSKKSAES--PSSESKGKHQLLYYVNLLLIDHRFLLR--TGEYVLHMWQISGKG 142 (178)
T ss_pred cccccCChhhEEEEEEEEEecCcccccccccc--cccccccccceEEEEEEEEEcCCCcee--cCCEEEEEecCCCcc
Confidence 53 32 488999999864321 1122221 11111111111134 45677666532 368888888766433
No 210
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=90.01 E-value=1.6 Score=45.18 Aligned_cols=86 Identities=20% Similarity=0.252 Sum_probs=55.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEE--CCEEE---EeeeeeeCCCCCeeceEEEEEec--
Q 001130 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVV---GRTFVISNSEDPVWQQHFYVPVA-- 419 (1148)
Q Consensus 347 GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l--~g~~~---~RTkvi~nt~NPvWNE~F~f~v~-- 419 (1148)
..++|+|....++...+. . ..+-||++.+ +++.. ..|+......++.|||...|++.
T Consensus 8 ~~~~i~i~~~~~~~~~~~-~---------------~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~ 71 (156)
T cd08380 8 FNLRIKIHGITNINLLDS-E---------------DLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILIS 71 (156)
T ss_pred CCeEEEEEeeccccccCC-C---------------ceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhh
Confidence 457888888888764110 0 1567888766 44322 13433333478999998888753
Q ss_pred CC--CceEEEEEEEccCCC---CcceeeEEEece
Q 001130 420 HS--AAEVHFFVKDSDVVG---SELIGTVAIPVE 448 (1148)
Q Consensus 420 ~~--~~~L~~~V~D~D~~~---ddfIG~v~IpL~ 448 (1148)
+. ++.|.|+|++.+..+ ...||.+.++|=
T Consensus 72 ~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lF 105 (156)
T cd08380 72 DLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLF 105 (156)
T ss_pred cCChhheEEEEEEEEecCCCCcceEEEEEeEEeE
Confidence 22 488999999977643 468888877664
No 211
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=88.57 E-value=2.7 Score=43.82 Aligned_cols=126 Identities=14% Similarity=0.255 Sum_probs=79.0
Q ss_pred EEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCC-------
Q 001130 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS------- 421 (1148)
Q Consensus 349 L~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~------- 421 (1148)
|.|+|+.++-.-.- ... .+....+-..+-+.+.++++ +|+.+..+.+|.++|.|.|++...
T Consensus 11 L~l~vlgGkAFld~--l~~---------~~~~~~s~~~l~l~f~~QRF-~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~ 78 (156)
T PF15627_consen 11 LHLRVLGGKAFLDH--LQE---------PEGQVCSTFTLHLHFRGQRF-RSKPVPCACEPDFNEEFLFELPRDSFGAGST 78 (156)
T ss_pred EEEEEeCchhHhhh--hhc---------cCCCCceEEEEEEEecCceE-ecCCcccccCCCCCCcEEEEecccccccccc
Confidence 78888888754311 110 00011144566777789997 999999999999999999997543
Q ss_pred -------CceEEEEEEEccCCC-CcceeeEEEeceeeccCCcc--cceeeeccCCCCCCCCCCcEEEEEEEeccc
Q 001130 422 -------AAEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKV--EGTYPVLNGSGKPCKPGATLTLSIQYTPME 486 (1148)
Q Consensus 422 -------~~~L~~~V~D~D~~~-ddfIG~v~IpL~eL~~G~~~--d~W~pL~~~~Gk~~~~~g~L~L~l~f~p~~ 486 (1148)
.+.|++.|.--|..+ ..++|.-.+.=..+...... ..-+.|.+......-..|.|.|++...|..
T Consensus 79 ~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 79 ATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred hhHhhcCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 134677776656533 36888877766555432221 334566554433223457888888877653
No 212
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=88.47 E-value=1.4 Score=46.11 Aligned_cols=65 Identities=17% Similarity=0.246 Sum_probs=45.5
Q ss_pred CCcEEEEEE--CCEEE---EeeeeeeCCCCCeeceEEEEEecC--C--CceEEEEEEEccCC-CCcceeeEEEec
Q 001130 383 SDPYVTIAV--AGAVV---GRTFVISNSEDPVWQQHFYVPVAH--S--AAEVHFFVKDSDVV-GSELIGTVAIPV 447 (1148)
Q Consensus 383 sDPYV~V~l--~g~~~---~RTkvi~nt~NPvWNE~F~f~v~~--~--~~~L~~~V~D~D~~-~ddfIG~v~IpL 447 (1148)
+|-||++.+ +++.. ..|+.+.-+..+.|||-..|++.- . .+.|.|+|||.+.. ....||.++++|
T Consensus 30 ~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~l 104 (159)
T cd08397 30 SDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSL 104 (159)
T ss_pred CCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEee
Confidence 788998876 44432 156555557778999988887642 2 48899999997654 345777776665
No 213
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=87.67 E-value=3 Score=39.67 Aligned_cols=84 Identities=18% Similarity=0.258 Sum_probs=60.4
Q ss_pred CCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCCceEEEEEEEccCCCCcceeeEEEeceeeccCCcccceeee
Q 001130 383 SDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1148)
Q Consensus 383 sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~~~L~~~V~D~D~~~ddfIG~v~IpL~eL~~G~~~d~W~pL 462 (1148)
++-.+++.++++.++.|.-.. -.+..|+|+|.|.+. ....|+|.|+=.|. ..+-|...+.|++...+. -++|
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~Ld-RsRELEI~VywrD~--RslCav~~lrLEd~~~~~----~~~l 80 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELE-RSRELEIAVYWRDW--RSLCAVKFLKLEDERHEV----QLDM 80 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEee-cccEEEEEEEEecc--hhhhhheeeEhhhhcccc----eecc
Confidence 577899999999999887644 357789999999987 45689999986655 457777788888744321 2344
Q ss_pred ccCCCCCCCCCCcEEEEEEE
Q 001130 463 LNGSGKPCKPGATLTLSIQY 482 (1148)
Q Consensus 463 ~~~~Gk~~~~~g~L~L~l~f 482 (1148)
.+.|.+...++|
T Consensus 81 --------epqg~l~~ev~f 92 (98)
T cd08687 81 --------EPQLCLVAELTF 92 (98)
T ss_pred --------ccccEEEEEEEe
Confidence 234566777776
No 214
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=84.21 E-value=4.2 Score=42.94 Aligned_cols=69 Identities=14% Similarity=0.189 Sum_probs=57.1
Q ss_pred CCcEEEEEECCEEEEeeeeeeC--CCCCeeceEEEEEecCCCceEEEEEEEccCCCCcceeeEEEeceeec
Q 001130 383 SDPYVTIAVAGAVVGRTFVISN--SEDPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIY 451 (1148)
Q Consensus 383 sDPYV~V~l~g~~~~RTkvi~n--t~NPvWNE~F~f~v~~~~~~L~~~V~D~D~~~ddfIG~v~IpL~eL~ 451 (1148)
...|++|.++++.+.+|+...- ...=.+||.|.+.+..--..|.|+||......+.+|+++.||+-...
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGLSDRLLAEVFVPVPGST 107 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCccceEEEEEEeeCCCCc
Confidence 5689999999999988876543 44457899999999876789999999988888999999999975443
No 215
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=81.97 E-value=3.9 Score=47.68 Aligned_cols=94 Identities=18% Similarity=0.264 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCcchhHHHHHHHHhHhhHHHHHHHHHHHcCCceeecccccccccccCCc
Q 001130 885 EIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNR 964 (1148)
Q Consensus 885 ~ial~Ia~ai~a~rgv~V~IVlP~~Peg~p~~~s~~~il~~~~rTm~~~~~si~~~L~~~Gv~~~~~P~~Yl~f~~L~~r 964 (1148)
.|+.+|.+|.+ .|=+|.+++-...-.+ +.++. +| .++|.++|+++.|. +
T Consensus 51 ~iv~aLi~AA~--nGK~Vtv~vELkARFD-Ee~Ni----~W------------a~~Le~aGv~ViyG---------~--- 99 (352)
T PF13090_consen 51 PIVNALIEAAE--NGKQVTVLVELKARFD-EENNI----HW------------AKRLEEAGVHVIYG---------V--- 99 (352)
T ss_dssp HHHHHHHHHHH--TT-EEEEEESTTSSST-TCCCC----CC------------CHHHHHCT-EEEE--------------
T ss_pred HHHHHHHHHHH--cCCEEEEEEEEecccc-HHHHh----HH------------HhhHHhcCeEEEcC---------C---
Confidence 57788888755 4666777776543222 12222 23 46799999988651 1
Q ss_pred ccccccCCCCCCCCCCCCchhhhhcccCCcceeeeeEEEEEe-------CeEEEEcccccccccCCCCCCcceEEEEeCc
Q 001130 965 EVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVD-------DEYVILGSANINQRSMEGTRDTEIAMGAYQP 1037 (1148)
Q Consensus 965 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~IYVHSKlmIVD-------D~~viIGSANLN~RSm~G~~DsEiav~i~dp 1037 (1148)
...-||||+++|= -+|+-||+-|.|...-. .=|.+++..-++
T Consensus 100 -----------------------------~glKvHaK~~lI~R~e~~~~~~Y~hlgTGNyNe~TAr--~YtD~~l~Ta~~ 148 (352)
T PF13090_consen 100 -----------------------------PGLKVHAKICLIVRREGGGLRRYAHLGTGNYNEKTAR--IYTDLSLFTADP 148 (352)
T ss_dssp -----------------------------TT-EE--EEEEEEEEETTEEEEEEEEESS-SSTTHCC--CEEEEEEEE--H
T ss_pred -----------------------------CChhheeeEEEEEEEeCCcEEEEEEEcCCCcCccchh--heecceeecCCH
Confidence 0247999999884 28999999999999886 678888888887
Q ss_pred chh
Q 001130 1038 EYT 1040 (1148)
Q Consensus 1038 ~~~ 1040 (1148)
+.+
T Consensus 149 ~i~ 151 (352)
T PF13090_consen 149 EIG 151 (352)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 216
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=81.21 E-value=6.6 Score=45.24 Aligned_cols=41 Identities=32% Similarity=0.330 Sum_probs=29.7
Q ss_pred eeeeeEEEEE----eCeEEEEccccccc-ccCCCCCCcceEEEEeCcc
Q 001130 996 IYVHSKGMIV----DDEYVILGSANINQ-RSMEGTRDTEIAMGAYQPE 1038 (1148)
Q Consensus 996 IYVHSKlmIV----DD~~viIGSANLN~-RSm~G~~DsEiav~i~dp~ 1038 (1148)
+-+|+|+.+. =+..++||||||.. -.+. .+-.| ++++.|+.
T Consensus 79 ~~~HgKlY~f~k~g~~~~a~IGSANfS~~~~~~-~~~~E-~~v~~D~~ 124 (296)
T PF09565_consen 79 PPYHGKLYIFSKNGKPFRAYIGSANFSQINGFT-RRQYE-AMVTCDPN 124 (296)
T ss_pred CCcccEEEEEecCCCceEEEEeecccccccccc-cccee-EEEecChH
Confidence 4689999999 24689999999988 3332 36779 66666653
No 217
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=80.36 E-value=3.8 Score=50.20 Aligned_cols=84 Identities=30% Similarity=0.426 Sum_probs=58.3
Q ss_pred EEEeeeeeeCCCCCeeceEEEEEecCC-CceEEEEEEEccC-----CCCcceeeEEEeceeeccCCcccceeeeccCCCC
Q 001130 395 VVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHFFVKDSDV-----VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGK 468 (1148)
Q Consensus 395 ~~~RTkvi~nt~NPvWNE~F~f~v~~~-~~~L~~~V~D~D~-----~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk 468 (1148)
.++||.++.+.+||.|-+.|.+...-. .+.|+|+++|-+. ...+|+|++...++++.+..... .+|..+.++
T Consensus 41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~--~~l~~~~~~ 118 (529)
T KOG1327|consen 41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLT--GPLLLKPGK 118 (529)
T ss_pred cccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhh--hhhhcccCc
Confidence 446999999999999999998775433 4889999998775 34789999999999888543322 233334444
Q ss_pred CCCCCCcEEEEEE
Q 001130 469 PCKPGATLTLSIQ 481 (1148)
Q Consensus 469 ~~~~~g~L~L~l~ 481 (1148)
.. ..|.|.+.+.
T Consensus 119 ~~-~~g~iti~ae 130 (529)
T KOG1327|consen 119 NA-GSGTITISAE 130 (529)
T ss_pred cC-CcccEEEEee
Confidence 32 2345555554
No 218
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=79.94 E-value=5.3 Score=42.56 Aligned_cols=53 Identities=11% Similarity=0.186 Sum_probs=31.8
Q ss_pred EeeeeeeCCCCCeeceEEEEEecCC---CceEEEEEEEccCCC----CcceeeEEEecee
Q 001130 397 GRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSDVVG----SELIGTVAIPVEQ 449 (1148)
Q Consensus 397 ~RTkvi~nt~NPvWNE~F~f~v~~~---~~~L~~~V~D~D~~~----ddfIG~v~IpL~e 449 (1148)
..|.|..++.+|.|+|+|.+.+... ...|.|++++..... +..+|-+.+||-+
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 4788888899999999999988544 378999999866521 2578877777765
No 219
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=78.90 E-value=16 Score=39.53 Aligned_cols=37 Identities=19% Similarity=0.543 Sum_probs=30.4
Q ss_pred EeeeeeeCCCCCeeceEEEEEecCC---CceEEEEEEEcc
Q 001130 397 GRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSD 433 (1148)
Q Consensus 397 ~RTkvi~nt~NPvWNE~F~f~v~~~---~~~L~~~V~D~D 433 (1148)
.+|-|...+.+|.|||++.+.+... ...|.|++++..
T Consensus 55 ~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S 94 (189)
T cd08695 55 YRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCS 94 (189)
T ss_pred EEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEee
Confidence 4899999999999999999987533 478999887644
No 220
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=76.90 E-value=9 Score=39.08 Aligned_cols=66 Identities=23% Similarity=0.363 Sum_probs=42.7
Q ss_pred CcEEEEEE--CCE----EEEeeeeeeCC-CCCeeceEEEEEec--CC--CceEEEEEEEccCCCC-----cceeeEEEec
Q 001130 384 DPYVTIAV--AGA----VVGRTFVISNS-EDPVWQQHFYVPVA--HS--AAEVHFFVKDSDVVGS-----ELIGTVAIPV 447 (1148)
Q Consensus 384 DPYV~V~l--~g~----~~~RTkvi~nt-~NPvWNE~F~f~v~--~~--~~~L~~~V~D~D~~~d-----dfIG~v~IpL 447 (1148)
+.||++.| +++ .+..|+.+.-+ .++.|||.+.|++. +. ++.|.|+|++.+.... ..||.+.++|
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l 82 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL 82 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence 34555555 343 22366666655 89999998888753 22 5889999998776443 5888888776
Q ss_pred ee
Q 001130 448 EQ 449 (1148)
Q Consensus 448 ~e 449 (1148)
=+
T Consensus 83 Fd 84 (142)
T PF00792_consen 83 FD 84 (142)
T ss_dssp B-
T ss_pred EC
Confidence 43
No 221
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=75.10 E-value=14 Score=35.51 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=34.6
Q ss_pred CCcEEEEEE--CCEEEE---eeeeeeCCCCCeeceEEEEEec--CC--CceEEEEEEEcc
Q 001130 383 SDPYVTIAV--AGAVVG---RTFVISNSEDPVWQQHFYVPVA--HS--AAEVHFFVKDSD 433 (1148)
Q Consensus 383 sDPYV~V~l--~g~~~~---RTkvi~nt~NPvWNE~F~f~v~--~~--~~~L~~~V~D~D 433 (1148)
+|-||++.+ +++... .|+.+.-...+.|||-..|++. +. .+.|.|+||+..
T Consensus 32 ~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 32 SDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred ceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 478998876 444331 5554444666899998888753 22 488999999853
No 222
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=74.90 E-value=15 Score=36.15 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=51.2
Q ss_pred EEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCC--------CceEEEEEEEccCCCCcceeeEEEeceeeccC--Cc
Q 001130 386 YVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS--------AAEVHFFVKDSDVVGSELIGTVAIPVEQIYSG--GK 455 (1148)
Q Consensus 386 YV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~--------~~~L~~~V~D~D~~~ddfIG~v~IpL~eL~~G--~~ 455 (1148)
||++.+-.-....|-++. +.+|..|-+-.+.|... ...+.|+++.---..-..||.+.|++.++... ..
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~ 80 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGER 80 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCce
Confidence 566666554444666666 89999998877777644 25688888765433356899999999999843 34
Q ss_pred ccceeeeccCCCCCCCCCCcEEEEEEEe
Q 001130 456 VEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1148)
Q Consensus 456 ~d~W~pL~~~~Gk~~~~~g~L~L~l~f~ 483 (1148)
+.....|.+.+|+. -|.|.+.++..
T Consensus 81 i~~~~~l~g~~~~~---~g~l~y~~rl~ 105 (107)
T PF11618_consen 81 IHGSATLVGVSGED---FGTLEYWIRLR 105 (107)
T ss_dssp EEEEEEE-BSSS-T---SEEEEEEEEEE
T ss_pred EEEEEEEeccCCCe---EEEEEEEEEec
Confidence 66778888887773 36888877743
No 223
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=74.52 E-value=9 Score=47.81 Aligned_cols=41 Identities=29% Similarity=0.455 Sum_probs=32.2
Q ss_pred eeeeEEEEEe----C---eEEEEcccccccccCCCCCCcceEEEEeCcch
Q 001130 997 YVHSKGMIVD----D---EYVILGSANINQRSMEGTRDTEIAMGAYQPEY 1039 (1148)
Q Consensus 997 YVHSKlmIVD----D---~~viIGSANLN~RSm~G~~DsEiav~i~dp~~ 1039 (1148)
-+|||+++|= | +|+-+|+-|.|..+-. .=|.+++..-|++.
T Consensus 437 KtHAKm~lVvRrE~~~lrrY~HlGTGNYn~~TAr--iYTD~sl~Tad~~i 484 (696)
T COG0855 437 KTHAKMLLVVRREGGKLRRYVHLGTGNYNPKTAR--LYTDLSLLTADPEI 484 (696)
T ss_pred eeeeeEEEEEEecCCcEEEEEEecCCCCCcccee--eeeechhccCCHHH
Confidence 5799999883 3 7999999999999876 55666766666654
No 224
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=73.44 E-value=17 Score=39.39 Aligned_cols=51 Identities=12% Similarity=0.281 Sum_probs=37.1
Q ss_pred EeeeeeeCCCCCeeceEEEEEecCC---CceEEEEEEEccCC--CC---cceeeEEEec
Q 001130 397 GRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSDVV--GS---ELIGTVAIPV 447 (1148)
Q Consensus 397 ~RTkvi~nt~NPvWNE~F~f~v~~~---~~~L~~~V~D~D~~--~d---dfIG~v~IpL 447 (1148)
.+|-|...+.+|.|+|++.+.+.-. ...|.|++++.... +| ..+|-+.+||
T Consensus 55 ~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL 113 (196)
T cd08694 55 YKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKL 113 (196)
T ss_pred EEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEee
Confidence 4898989999999999999987533 47899999774431 12 3566655555
No 225
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=73.37 E-value=35 Score=36.80 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHhhccEEEEEEeEeecCCCCcccccccCcCCccHHHH-HHHHHHHHHcCCCcEEEEEecCC
Q 001130 839 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEI-ALKIADKIRAHERFAAYIVIPMW 909 (1148)
Q Consensus 839 ~sI~~Ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~i-al~Ia~ai~a~rgv~V~IVlP~~ 909 (1148)
..|...++..|+.|+.|..+. -|+..+ +..+ ...+..+ .++|++++|++...
T Consensus 38 e~il~~Li~~l~k~~ef~IsV--aFit~s---------------G~sll~~~L~d~--~~Kgvkgkilts~Y 90 (198)
T COG3886 38 EKILPRLIDELEKADEFEISV--AFITES---------------GLSLLFDLLLDL--VNKGVKGKILTSDY 90 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEE--EEeeCc---------------cHHHHHHHHHHH--hcCCceEEEecccc
Confidence 368999999999999999888 466554 1122 2223332 48999999999764
No 226
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=72.87 E-value=8.2 Score=49.40 Aligned_cols=120 Identities=19% Similarity=0.232 Sum_probs=76.1
Q ss_pred ceeeeceEEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECC----EEEEeeeeeeCCCCCeeceEEEE
Q 001130 341 KVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYV 416 (1148)
Q Consensus 341 ~~~Ll~GtL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g----~~~~RTkvi~nt~NPvWNE~F~f 416 (1148)
...+.-|.|.+.+.+|.+|..- ...||+..++. ...++|+++.+|..|.||++|++
T Consensus 753 eSpl~ygflh~~vhsat~lkqs--------------------~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv 812 (1112)
T KOG4269|consen 753 ESPLLYGFLHVIVHSATGLKQS--------------------RNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHV 812 (1112)
T ss_pred cCcccccceeeeeccccccccc--------------------cceeeehhhhhhccccccccceeeecccCCCCChhccc
Confidence 4457778999999999998731 46799888753 33369999999999999999999
Q ss_pred EecCCCceEEEEEEEccCC-----------CCcceeeEEEeceeeccCCcccceeeeccC-CCCCCCCCCcEEEEEEEec
Q 001130 417 PVAHSAAEVHFFVKDSDVV-----------GSELIGTVAIPVEQIYSGGKVEGTYPVLNG-SGKPCKPGATLTLSIQYTP 484 (1148)
Q Consensus 417 ~v~~~~~~L~~~V~D~D~~-----------~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~-~Gk~~~~~g~L~L~l~f~p 484 (1148)
++... +.++|...+++.- .+...|...+-+.--... ...|+.-... +| ..+...|.|.+
T Consensus 813 ~~~~s-qS~r~~~~ek~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~~~--d~d~~t~v~~~n~------~~ve~~v~~ss 883 (1112)
T KOG4269|consen 813 PVIES-QSSRLEKTEKSTPVEKLIDSHSQNSQNEEKRSRMKLDPQPHH--DADWYTQVIDMNG------IVVETSVKFSS 883 (1112)
T ss_pred chhhc-cccchhhhcccchHHHhhhccchhhcccccccccccCccccc--cccCccChhhhcC------cceeeeEEecc
Confidence 87633 3455666665531 133455554444322111 1235543222 22 25678888887
Q ss_pred ccccc
Q 001130 485 MERLS 489 (1148)
Q Consensus 485 ~~~~~ 489 (1148)
...-.
T Consensus 884 ss~Ss 888 (1112)
T KOG4269|consen 884 SSTSS 888 (1112)
T ss_pred ccccc
Confidence 65543
No 227
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=65.68 E-value=7.4 Score=45.84 Aligned_cols=55 Identities=15% Similarity=0.217 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhhccEEEEEEeEeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecCCC
Q 001130 840 SIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWP 910 (1148)
Q Consensus 840 sI~~Ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~~P 910 (1148)
..++.+.+.|.+||+.|+|.+=|.-.. ..+++..|-.++..+..++|-|++...-
T Consensus 39 ~fy~~lk~~I~~aq~Ri~lasLYlG~~----------------E~elv~cl~~aL~~~~~L~v~iLlD~~r 93 (469)
T KOG3964|consen 39 EFYQRLKKLIKKAQRRIFLASLYLGKL----------------ERELVDCLSNALEKNPSLKVSILLDFLR 93 (469)
T ss_pred HHHHHHHHHHHHhhheeeeeeeccchh----------------HHHHHHHHHHHhccCCCcEEEeehhhhh
Confidence 467889999999999999999888542 4688999999999999999999997643
No 228
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=64.22 E-value=18 Score=38.35 Aligned_cols=51 Identities=14% Similarity=0.243 Sum_probs=35.3
Q ss_pred eeeeeCCCCCeeceEEEEEecCC---CceEEEEEEEccCCC------CcceeeEEEecee
Q 001130 399 TFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSDVVG------SELIGTVAIPVEQ 449 (1148)
Q Consensus 399 Tkvi~nt~NPvWNE~F~f~v~~~---~~~L~~~V~D~D~~~------ddfIG~v~IpL~e 449 (1148)
|.++..+.+|.|+|+|.+.+... ...|.|++++-+... ...+|-+.+||-+
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 44444449999999999987433 477999998866422 3467777666643
No 229
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=64.09 E-value=2.6 Score=52.62 Aligned_cols=92 Identities=13% Similarity=0.041 Sum_probs=63.2
Q ss_pred CCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCCceEEEEEEEccCC-CCcceeeEEEeceeeccC-Cccccee
Q 001130 383 SDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSG-GKVEGTY 460 (1148)
Q Consensus 383 sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~~~L~~~V~D~D~~-~ddfIG~v~IpL~eL~~G-~~~d~W~ 460 (1148)
.|||+.|.+.-...+.+.+...+.+|.|+|+|.+.+. ....+.|.|+..... .+.+..++.+-.++++.. ...+.|.
T Consensus 28 l~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~-~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~w~ 106 (694)
T KOG0694|consen 28 LQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVV-AGGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRLWV 106 (694)
T ss_pred hhhhheeccceeecccccCCCCCCCchhhhheeeeee-cCCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhhcc
Confidence 6999999998877777777888999999999999954 455678888876532 244555566666655532 2345788
Q ss_pred eeccCCCCCCCCCCcEEEEEEEe
Q 001130 461 PVLNGSGKPCKPGATLTLSIQYT 483 (1148)
Q Consensus 461 pL~~~~Gk~~~~~g~L~L~l~f~ 483 (1148)
.+ .+.| ++...+.++
T Consensus 107 ~~-~~~g-------~~~~~~~~~ 121 (694)
T KOG0694|consen 107 LI-EELG-------TLLKPAALT 121 (694)
T ss_pred cc-cccc-------ceeeeeccc
Confidence 86 3443 455555544
No 230
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=62.73 E-value=25 Score=37.75 Aligned_cols=39 Identities=10% Similarity=0.121 Sum_probs=31.9
Q ss_pred EEeeeeeeCCCCCeeceEEEEEecCC---CceEEEEEEEccC
Q 001130 396 VGRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSDV 434 (1148)
Q Consensus 396 ~~RTkvi~nt~NPvWNE~F~f~v~~~---~~~L~~~V~D~D~ 434 (1148)
...|.|...+.+|.|+|+|.+.+.-. ...|.|+.++-+.
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~ 96 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISC 96 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeec
Confidence 35899999999999999999987543 3679999988554
No 231
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=61.71 E-value=5.3 Score=48.62 Aligned_cols=42 Identities=24% Similarity=0.270 Sum_probs=28.8
Q ss_pred CcceeeeeEEEEEeC-------eEEEEcccccccccCCCC----------CCcceEEEEe
Q 001130 993 RFMIYVHSKGMIVDD-------EYVILGSANINQRSMEGT----------RDTEIAMGAY 1035 (1148)
Q Consensus 993 ~~~IYVHSKlmIVDD-------~~viIGSANLN~RSm~G~----------~DsEiav~i~ 1035 (1148)
|..+..|+|+++... .|+++|||||-.-.+ |. +|.|++|++.
T Consensus 344 R~~~~pH~K~y~~~~~~~~~~~~W~~lgShNLS~aAW-G~~~~~~~~l~i~nyElGVl~~ 402 (443)
T PF06087_consen 344 RSRAPPHIKTYMRFSKNDFKSLGWFYLGSHNLSKAAW-GKRSKNGSQLSIRNYELGVLFL 402 (443)
T ss_dssp TTTS-B--EEEEEEE-TTTSEECEEEEES--BSHHHH--EEETTTTCCEESSBEEEEEEE
T ss_pred CCCcCcceEEEEEecCCCCCccceEEeCcccCCHHHh-cccccCCceeeecceEEEEEEe
Confidence 345678999999986 599999999976554 34 7999999983
No 232
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=50.87 E-value=58 Score=35.17 Aligned_cols=39 Identities=8% Similarity=0.192 Sum_probs=31.8
Q ss_pred EEeeeeeeCCCCCeeceEEEEEecCC---CceEEEEEEEccC
Q 001130 396 VGRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSDV 434 (1148)
Q Consensus 396 ~~RTkvi~nt~NPvWNE~F~f~v~~~---~~~L~~~V~D~D~ 434 (1148)
...|.|...+.+|.|+|++.+.+.-. ...|.|+.++-+.
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc 98 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSC 98 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeecc
Confidence 45899999999999999999987533 4679999988653
No 233
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=48.70 E-value=33 Score=38.01 Aligned_cols=50 Identities=14% Similarity=0.093 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHhhccEEEEEEeEeecCCCCcccccccCcCCccHHHHHHHHHHHHHcCCCcEEEEEecC
Q 001130 839 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPM 908 (1148)
Q Consensus 839 ~sI~~Ayl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~g~~n~I~~~ial~Ia~ai~a~rgv~V~IVlP~ 908 (1148)
..|.+...++|++|++.|||....=. -.++...|.+| .++||+|+|++..
T Consensus 9 ~~I~~~i~elI~~Ae~eI~is~~~~~------------------l~~l~~~L~~a--~~rGV~V~li~~~ 58 (233)
T PF11495_consen 9 ETILERIRELIENAESEIYISIPPEF------------------LEELRDELEEA--VDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHC-SSEEEEEE-GGG------------------HHHHHHHHHHH--HHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHHhheEEEEEcCHHH------------------HHHHHHHHHHH--HHCCCEEEEEEeC
Confidence 47889999999999999999854210 12455555554 3689999999976
No 234
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=46.38 E-value=96 Score=38.64 Aligned_cols=113 Identities=12% Similarity=0.171 Sum_probs=74.8
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCCeeceEEEEEecCCCceEEE
Q 001130 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 427 (1148)
Q Consensus 348 tL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NPvWNE~F~f~v~~~~~~L~~ 427 (1148)
.|+|.|.+.+||+....+. =-||++.+.|.+. +|--. ...-|.|.-.=.|...++...+++
T Consensus 342 smevvvmevqglksvapnr-----------------ivyctmevegekl-qtdqa-easkp~wgtqgdfstthplpvvkv 402 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVAPNR-----------------IVYCTMEVEGEKL-QTDQA-EASKPKWGTQGDFSTTHPLPVVKV 402 (1218)
T ss_pred eeeEEEeeeccccccCCCe-----------------eEEEEEEeccccc-ccchh-hhcCCCCCcCCCcccCCCCceeEE
Confidence 5899999999998654322 2599999999776 55432 256799999888888888777777
Q ss_pred EEEEccC----CCCcceeeEEEeceeeccCCcccceeeeccCCCCCCCCCCcEEEEEEE
Q 001130 428 FVKDSDV----VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1148)
Q Consensus 428 ~V~D~D~----~~ddfIG~v~IpL~eL~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f 482 (1148)
.++-... ..|.-+|++.|--..= ......|+.+.-++..+- ..-+|+|.++.
T Consensus 403 klftestgvlaledkelgrvil~ptpn--s~ks~ewh~mtvpknsqd-qdlkiklavrm 458 (1218)
T KOG3543|consen 403 KLFTESTGVLALEDKELGRVILQPTPN--SAKSPEWHTMTVPKNSQD-QDLKIKLAVRM 458 (1218)
T ss_pred EEEeecceeEEeechhhCeEEEecCCC--CcCCccceeeecCCCCcC-ccceEEEEEec
Confidence 7776543 4577899987743211 123347888765544432 22355665553
No 235
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=46.33 E-value=40 Score=42.99 Aligned_cols=13 Identities=31% Similarity=0.733 Sum_probs=6.8
Q ss_pred ceeeEEEeceeec
Q 001130 439 LIGTVAIPVEQIY 451 (1148)
Q Consensus 439 fIG~v~IpL~eL~ 451 (1148)
|+|...+|-++|.
T Consensus 707 flgS~rmpyeeik 719 (1102)
T KOG1924|consen 707 FLGSFRMPYEEIK 719 (1102)
T ss_pred HHhhccCCHHHHH
Confidence 5555555555444
No 236
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.12 E-value=32 Score=41.43 Aligned_cols=12 Identities=67% Similarity=1.118 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCC
Q 001130 47 PAYPYQPSACPP 58 (1148)
Q Consensus 47 ~~~~~~~~~~~~ 58 (1148)
|+||+|-++-||
T Consensus 453 p~~P~~~~pppP 464 (483)
T KOG2236|consen 453 PAYPHQQSPPPP 464 (483)
T ss_pred CCCccccCCCCC
Confidence 577888877666
No 237
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=44.03 E-value=1.4e+02 Score=35.01 Aligned_cols=110 Identities=11% Similarity=0.106 Sum_probs=74.7
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccccCCCCCCCCcEEEEEECCEEEEeeeeeeCCCCC--eeceEEEEEecCCCceE
Q 001130 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDP--VWQQHFYVPVAHSAAEV 425 (1148)
Q Consensus 348 tL~VtV~eAk~L~~~D~~g~~~~~~~~k~~~~~~~sDPYV~V~l~g~~~~RTkvi~nt~NP--vWNE~F~f~v~~~~~~L 425 (1148)
.|-|.|.+-.++... ...|+.+..+...+ +|..+.-+..- .-.|...+.+..-...|
T Consensus 59 ~LLVeI~EI~~i~k~--------------------khiyIef~~Gr~d~-TT~~IpTsKK~RI~IqqRV~IkIRQcDnTL 117 (508)
T PTZ00447 59 YLLVKINEIFNINKY--------------------KHIYIIFSTDKYDF-TTDEIPTNKKNRIHIDQRVDIKIRQCDETL 117 (508)
T ss_pred eEEEEehhhhccccc--------------------eeEEEEEEcCceEE-EccccccCcCceEEEeeeeeeeeeecCceE
Confidence 377888887766521 35799999988876 66554433222 23355555666556789
Q ss_pred EEEEEEccCCCCcceeeEEEece-eeccC-CcccceeeeccCCCCCCCCCCcEEEEEEEec
Q 001130 426 HFFVKDSDVVGSELIGTVAIPVE-QIYSG-GKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1148)
Q Consensus 426 ~~~V~D~D~~~ddfIG~v~IpL~-eL~~G-~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~p 484 (1148)
++.|+-...++..-||.+.|.+. ++..+ -....||-+ .++|+.. .++.|.|.-
T Consensus 118 kI~lfKKkLvkk~hIgdI~InIn~dIIdk~FPKnkWy~c-~kDGq~~-----cRIqLSFhK 172 (508)
T PTZ00447 118 RVDLFTTKLTKKVHIGQIKIDINASVISKSFPKNEWFVC-FKDGQEI-----CKVQMSFYK 172 (508)
T ss_pred EEEEEeccccceeEEEEEEecccHHHHhccCCccceEEE-ecCCcee-----eeEEEEehh
Confidence 99999888888999999999985 34444 345689999 4777743 356666654
No 238
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=40.53 E-value=29 Score=41.67 Aligned_cols=45 Identities=18% Similarity=0.315 Sum_probs=34.1
Q ss_pred ceeeEEEecee-eccCCcccceeeeccCCCCCCCCCCcEEEEEEEecc
Q 001130 439 LIGTVAIPVEQ-IYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPM 485 (1148)
Q Consensus 439 fIG~v~IpL~e-L~~G~~~d~W~pL~~~~Gk~~~~~g~L~L~l~f~p~ 485 (1148)
++|.+.||+.. +..|...+.||++.+...+..+ .|.+ |+++|...
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~~-~~~l-lk~~~~~~ 46 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSVG-EGLI-IKVSSEEN 46 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCcC-cceE-EEEEeeec
Confidence 48999999999 5567788999999987666543 4566 67777543
No 239
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=39.69 E-value=2.8e+02 Score=33.57 Aligned_cols=100 Identities=18% Similarity=0.253 Sum_probs=58.2
Q ss_pred CCcEEEEEECCEEEEeeeeeeC----CCCC-eec---eEEEEEec-------CC-----CceEEEEEEEccC-------C
Q 001130 383 SDPYVTIAVAGAVVGRTFVISN----SEDP-VWQ---QHFYVPVA-------HS-----AAEVHFFVKDSDV-------V 435 (1148)
Q Consensus 383 sDPYV~V~l~g~~~~RTkvi~n----t~NP-vWN---E~F~f~v~-------~~-----~~~L~~~V~D~D~-------~ 435 (1148)
+..||+|.|.+-.. +|..+.= +.++ .=+ -.|++.-. .+ ...|+|.||--.. .
T Consensus 36 spCfC~IrL~~fP~-Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~ 114 (460)
T PF06219_consen 36 SPCFCEIRLKGFPS-QTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGN 114 (460)
T ss_pred CCeEEEEecCCCCc-cceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccccc
Confidence 57799999998654 4443321 1221 111 24555411 11 1468999987443 2
Q ss_pred CCcceeeEEEeceeec--cCC---cccceeeeccCCC-CCCCCCCcEEEEEEEec
Q 001130 436 GSELIGTVAIPVEQIY--SGG---KVEGTYPVLNGSG-KPCKPGATLTLSIQYTP 484 (1148)
Q Consensus 436 ~ddfIG~v~IpL~eL~--~G~---~~d~W~pL~~~~G-k~~~~~g~L~L~l~f~p 484 (1148)
...+||++.|+|. +. .+. ...+|+.|=..++ +..+..++|||.++-.|
T Consensus 115 ~~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~Ep 168 (460)
T PF06219_consen 115 SGKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEP 168 (460)
T ss_pred cceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccC
Confidence 4579999999997 33 222 2368999933221 11224679999999554
No 240
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=37.72 E-value=1.6e+02 Score=39.64 Aligned_cols=6 Identities=50% Similarity=1.010 Sum_probs=2.3
Q ss_pred CCCCCC
Q 001130 228 NSPAYP 233 (1148)
Q Consensus 228 ~~~~~~ 233 (1148)
+++.|.
T Consensus 1455 tsp~ys 1460 (1605)
T KOG0260|consen 1455 TSPNYS 1460 (1605)
T ss_pred CCCCCC
Confidence 334443
No 241
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=33.97 E-value=94 Score=34.57 Aligned_cols=49 Identities=22% Similarity=0.282 Sum_probs=31.7
Q ss_pred HHHHHHHHHhc---cceEEEEeeccceeeEEeCCC-CchHHHHHHHHHHhhhcCCc-EEEEE
Q 001130 548 YDICNAISQAQ---RLIYITGWSVWHKVKLVRDAS-PALDCTLGELLRSKSQEGVR-VLLLV 604 (1148)
Q Consensus 548 ~al~eAI~~Ar---~sI~I~~W~~~p~i~L~rd~~-~~~g~~L~dlL~~kA~rGVk-VrILV 604 (1148)
+.+.++|+.|+ ..++|.| |..++. ...-.-|..+|+.++++||+ |+|-+
T Consensus 14 ~~l~~~~~~~k~~~~~lHl~G--------LlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~ 67 (223)
T PF06415_consen 14 PVLLEAIEHAKKNGGRLHLMG--------LLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHA 67 (223)
T ss_dssp HHHHHHHHHHCCTT--EEEEE--------EESS-SSS--HHHHHHHHHHHHHTT-SEEEEEE
T ss_pred HHHHHHHHHHHhcCCeEEEEE--------EecCCCccccHHHHHHHHHHHHHcCCCEEEEEE
Confidence 45666677776 4899998 556654 34567788899999999987 65544
No 242
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=31.83 E-value=1.7e+02 Score=35.83 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=12.6
Q ss_pred cccccccccCCCCCCCcccccCCCch
Q 001130 114 YPYAQAQSSQDHYPFPETTAQLPSGV 139 (1148)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (1148)
+.-.|+|+| |-||+-.|.-.|-|+
T Consensus 466 Pg~~s~~~s--~~P~q~s~~~~pp~~ 489 (554)
T KOG0119|consen 466 PGMQSAQSS--SLPQQASTTSIPPGD 489 (554)
T ss_pred CCccccccc--cCCcccccccCCccc
Confidence 334444444 445555566666664
No 243
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.63 E-value=2.7e+02 Score=31.75 Aligned_cols=32 Identities=41% Similarity=0.599 Sum_probs=26.9
Q ss_pred cccCCCCCCCCCCCCCCCCCCcccccCCCccc
Q 001130 85 YPYEHPAPVSSSMPQTPQHSSSFEYFPHPYPY 116 (1148)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (1148)
-++..|+|+-||.+..|.|+.+|.+-|-|-|+
T Consensus 246 a~~nnP~p~ySst~~ap~ps~f~~~~P~~qP~ 277 (338)
T KOG0917|consen 246 APANNPAPVYSSTGVAPNPSTFFTIQPTPQPI 277 (338)
T ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 35889999999999999999988887766444
No 244
>PF07615 Ykof: YKOF-related Family; InterPro: IPR011522 This entry represents YkoF-related proteins. YkoF is involved in the hydroxymethyl pyrimidine (HMP) salvage pathway []. The domain is found in pairs in these proteins.; PDB: 1S7H_A 1S99_A 1SBR_B.
Probab=27.32 E-value=1.6e+02 Score=27.54 Aligned_cols=69 Identities=17% Similarity=0.219 Sum_probs=46.6
Q ss_pred CCeeEecccccCCCCCCCceeecCCCccchhHHHHHHHHHHHHhcc-ceEEEEeeccceeeEEeCCCCchHHHHHHHHHH
Q 001130 514 GGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQR-LIYITGWSVWHKVKLVRDASPALDCTLGELLRS 592 (1148)
Q Consensus 514 Gn~V~ly~dg~~~~~~~p~i~l~~g~~y~~~~~f~al~eAI~~Ar~-sI~I~~W~~~p~i~L~rd~~~~~g~~L~dlL~~ 592 (1148)
|+++.||.=|. .+..+.|.++|+.+++ -+++..-.++. .++.+....-..|.++..+
T Consensus 3 ~a~~SLYPmg~-------------------~dy~~~I~~~i~~~~~~gl~~~t~~~sT---~l~G~~~~Vf~~l~~~~~~ 60 (81)
T PF07615_consen 3 GAQFSLYPMGT-------------------DDYMDVILGAIDRLDDSGLWVETDHYST---QLRGDEEDVFDALEAAFER 60 (81)
T ss_dssp EEEEEEEETTS-------------------TTHHHHHHHHHHHCHHTTSEEEEETTEE---EEECBHHHHHHHHHHHHHH
T ss_pred eEEEEecccCC-------------------ccHHHHHHHHHHHHhhcCcEEeecccEE---EEECCHHHHHHHHHHHHHH
Confidence 67888886543 1456889999998874 57776654433 4555443345667777777
Q ss_pred hhhcCCcEEEEE
Q 001130 593 KSQEGVRVLLLV 604 (1148)
Q Consensus 593 kA~rGVkVrILV 604 (1148)
++++|..|-+-+
T Consensus 61 a~~~~~H~v~~~ 72 (81)
T PF07615_consen 61 AAEEGPHVVMVV 72 (81)
T ss_dssp HHCCSSSEEEEE
T ss_pred HhccCCeEEEEE
Confidence 888888776654
No 245
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=26.38 E-value=1.3e+02 Score=35.10 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=14.0
Q ss_pred cccccCCCCCCCCCCCCCCCC
Q 001130 83 LLYPYEHPAPVSSSMPQTPQH 103 (1148)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ 103 (1148)
.+-|+-.|.|-+.||-..||-
T Consensus 314 h~NpaffpPP~~~s~GppP~~ 334 (498)
T KOG4849|consen 314 HNNPAFFPPPQLGSMGPPPQM 334 (498)
T ss_pred ccCcccCCCCCcCcCCCCCCC
Confidence 445666677778888766653
No 246
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=22.71 E-value=58 Score=39.79 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=24.1
Q ss_pred eeeeEEEEE---eC-eEEEEcccccccccCCCCCCcceEEEEeC
Q 001130 997 YVHSKGMIV---DD-EYVILGSANINQRSMEGTRDTEIAMGAYQ 1036 (1148)
Q Consensus 997 YVHSKlmIV---DD-~~viIGSANLN~RSm~G~~DsEiav~i~d 1036 (1148)
--|||+||. |+ --++|.||||-..-+. +-|=+|-+-|
T Consensus 101 ~hHsKm~ll~y~~~~lRVvI~TaNl~~~Dw~---~~~q~vw~~d 141 (443)
T PF06087_consen 101 THHSKMMLLFYEDGSLRVVIPTANLTPYDWN---NKTQGVWIQD 141 (443)
T ss_dssp -B--EEEEEEETTCEEEEEEESS-BSHHHHC---SSB-EEEE--
T ss_pred cccceeEEEEeCCccEEEEEECCCCCHHHHC---CcceeEEEec
Confidence 569999998 67 7899999999888775 4555665544
No 247
>KOG1120 consensus Fe-S cluster biosynthesis protein ISA1 (contains a HesB-like domain) [Inorganic ion transport and metabolism]
Probab=22.01 E-value=36 Score=34.27 Aligned_cols=21 Identities=48% Similarity=0.646 Sum_probs=17.8
Q ss_pred CCcchhhccccCcccccCCCC
Q 001130 172 GQDSFVQDKLSSGRVFSRPHH 192 (1148)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~ 192 (1148)
-+-.||.|||+|+.||+.||-
T Consensus 102 teMDyvddkL~Sefvf~npna 122 (134)
T KOG1120|consen 102 TEMDYVDDKLSSEFVFSNPNA 122 (134)
T ss_pred ceehhhhhhhcCceEeeCCCc
Confidence 345689999999999999983
Done!