Query 001132
Match_columns 1147
No_of_seqs 197 out of 524
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 16:42:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001132.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001132hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1410 Nuclear transport rece 100.0 1E-164 3E-169 1362.3 73.3 998 33-1145 5-1068(1082)
2 COG5101 CRM1 Importin beta-rel 100.0 8.3E-69 1.8E-73 594.2 57.2 916 23-1143 11-1031(1053)
3 KOG4541 Nuclear transport rece 100.0 1.1E-63 2.4E-68 547.6 36.3 654 449-1147 4-748 (748)
4 KOG2020 Nuclear transport rece 100.0 4.2E-42 9.1E-47 422.2 56.6 788 48-1017 29-892 (1041)
5 KOG2022 Nuclear transport rece 100.0 2.4E-25 5.3E-30 259.7 73.2 917 31-1144 5-978 (982)
6 KOG4541 Nuclear transport rece 99.8 2.6E-17 5.7E-22 183.1 29.2 518 290-867 1-533 (748)
7 KOG2021 Nuclear mRNA export fa 99.8 2.1E-12 4.5E-17 149.5 63.7 260 33-365 3-275 (980)
8 PF08767 CRM1_C: CRM1 C termin 99.7 3.9E-16 8.5E-21 176.3 17.9 262 854-1143 3-317 (319)
9 KOG2171 Karyopherin (importin) 99.4 3.2E-07 6.9E-12 113.4 63.7 146 34-187 5-152 (1075)
10 KOG2023 Nuclear transport rece 99.4 1.3E-08 2.8E-13 117.4 47.3 714 24-1018 8-737 (885)
11 KOG2081 Nuclear transport regu 99.2 6.5E-09 1.4E-13 119.2 30.1 334 49-494 2-340 (559)
12 PF08389 Xpo1: Exportin 1-like 98.9 9.3E-09 2E-13 103.7 13.1 148 123-339 1-148 (148)
13 KOG1241 Karyopherin (importin) 98.6 0.0017 3.6E-08 77.6 44.3 132 48-186 18-163 (859)
14 KOG1991 Nuclear transport rece 98.6 0.005 1.1E-07 75.9 67.5 148 23-185 1-159 (1010)
15 PF03810 IBN_N: Importin-beta 98.5 2.4E-07 5.2E-12 82.1 7.9 66 51-116 1-76 (77)
16 KOG1993 Nuclear transport rece 97.8 0.00044 9.5E-09 82.5 17.0 163 32-218 3-177 (978)
17 COG5656 SXM1 Importin, protein 97.6 0.35 7.6E-06 58.4 49.0 139 41-184 12-157 (970)
18 KOG1992 Nuclear export recepto 97.6 0.034 7.4E-07 67.4 27.5 163 48-224 22-194 (960)
19 COG5657 CSE1 CAS/CSE protein i 96.8 0.07 1.5E-06 65.7 19.8 145 31-186 6-156 (947)
20 COG5215 KAP95 Karyopherin (imp 94.9 11 0.00024 44.8 49.2 108 48-162 22-143 (858)
21 KOG2274 Predicted importin 9 [ 91.5 49 0.0011 41.9 58.7 128 48-184 21-159 (1005)
22 KOG2171 Karyopherin (importin) 86.8 1.1E+02 0.0025 39.9 27.2 63 953-1019 362-424 (1075)
23 KOG1824 TATA-binding protein-i 73.2 2.7E+02 0.0059 35.9 19.8 162 77-260 146-314 (1233)
24 PF03991 Prion_octapep: Copper 63.8 3.6 7.8E-05 19.6 0.6 7 10-16 2-8 (8)
25 PF12348 CLASP_N: CLASP N term 46.8 2.7E+02 0.0059 29.7 12.8 109 982-1115 51-162 (228)
26 PF10521 DUF2454: Protein of u 43.3 3.1E+02 0.0067 30.7 12.8 172 137-377 107-278 (282)
27 COG5240 SEC21 Vesicle coat com 41.7 7.4E+02 0.016 30.3 17.4 206 861-1140 252-462 (898)
28 PF08167 RIX1: rRNA processing 41.1 1.6E+02 0.0034 30.1 9.1 117 953-1091 39-156 (165)
29 PF08623 TIP120: TATA-binding 36.9 98 0.0021 31.8 6.6 56 953-1015 41-96 (169)
30 PF13513 HEAT_EZ: HEAT-like re 36.6 81 0.0018 25.2 5.0 55 953-1011 1-55 (55)
31 PF13646 HEAT_2: HEAT repeats; 34.4 1.6E+02 0.0034 25.9 7.1 82 38-135 4-88 (88)
32 KOG0946 ER-Golgi vesicle-tethe 33.5 1.1E+03 0.025 30.1 19.0 193 33-257 22-244 (970)
33 cd00020 ARM Armadillo/beta-cat 31.9 2E+02 0.0043 26.5 7.9 107 64-181 8-119 (120)
34 PF06738 DUF1212: Protein of u 30.5 5.4E+02 0.012 26.7 11.5 106 21-138 60-166 (193)
35 PF02985 HEAT: HEAT repeat; I 28.6 80 0.0017 22.1 3.2 30 985-1014 1-30 (31)
36 KOG1991 Nuclear transport rece 27.8 1.5E+03 0.033 29.7 25.1 91 979-1093 497-588 (1010)
37 PF10441 Urb2: Urb2/Npa2 famil 24.6 8.9E+02 0.019 25.9 16.2 65 956-1020 5-74 (223)
38 PF12333 Ipi1_N: Rix1 complex 24.2 1.1E+02 0.0024 28.4 4.3 36 980-1015 7-42 (102)
39 PF01602 Adaptin_N: Adaptin N 23.2 3.5E+02 0.0075 33.1 9.8 90 74-180 89-179 (526)
40 PF11864 DUF3384: Domain of un 22.6 1.4E+03 0.03 27.6 15.7 230 26-344 2-244 (464)
41 PF00790 VHS: VHS domain; Int 22.0 2.9E+02 0.0063 27.2 7.1 95 35-135 10-114 (140)
42 PF03224 V-ATPase_H_N: V-ATPas 20.8 1.2E+03 0.027 26.2 16.0 83 54-138 94-178 (312)
43 PLN03076 ARF guanine nucleotid 20.5 1.9E+03 0.04 31.6 16.2 67 951-1017 1236-1303(1780)
44 KOG0368 Acetyl-CoA carboxylase 20.4 2E+03 0.044 30.3 15.2 152 953-1137 839-991 (2196)
No 1
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-164 Score=1362.33 Aligned_cols=998 Identities=19% Similarity=0.284 Sum_probs=887.3
Q ss_pred HHHHHHHHHhhCCCC---HHHHHHHHHhhhcCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhcccCCCCHHHHHHHHH
Q 001132 33 HSIEIACSSIQMHVN---PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIG 109 (1147)
Q Consensus 33 ~~le~~~~~l~~~~~---r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~~~~lr~ 109 (1147)
.++|.+|+.+|.+.| |.+||+.|.+|..+|+++++|+.+|++++.||.++.|+++|.+.+.++ +.||.++|.+||+
T Consensus 5 aqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~pYs~mlAst~L~Klvs~~-t~lpl~qrldir~ 83 (1082)
T KOG1410|consen 5 AQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSYPYSQMLASTCLMKLVSRK-TPLPLEQRLDIRN 83 (1082)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCC-CCCcHHHHHHHHH
Confidence 789999999999776 799999999999999999999999999999999999999999999998 5899999999999
Q ss_pred HHHHHHHhccCCCchhHHHHHHHHHHHHHHhhccCCCCCch--hhHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhCCC
Q 001132 110 FCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDK--EAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPS 187 (1147)
Q Consensus 110 ~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~--~~~~~~i~~~~~~~~s~~~~~~~l~iL~~lv~E~s~~ 187 (1147)
|+++|+.+++|.+++||...+++++|+++|.||+|..+.+. .+.+.++.++++. ++.+||++|+.||+.|++||+..
T Consensus 84 Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~-~~ve~~~igv~iLsqLvqemN~~ 162 (1082)
T KOG1410|consen 84 YILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQM-DNVEHCIIGVQILSQLVQEMNQA 162 (1082)
T ss_pred HHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhcc-CchHHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999998654221 2566667777764 56899999999999999999998
Q ss_pred CCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchh-hhHHHHHHHHHHHHHHHcccccccCCCCCcc
Q 001132 188 TSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAA-ASEVKACTAALRLLHQILNWDFQFDTSGRKI 266 (1147)
Q Consensus 188 ~ss~~~~~~~~h~k~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~-~~~~~l~~~~L~l~~~~LswdF~~~~~d~~~ 266 (1147)
+.+.|..+|||.+.+|||+.|.+||.+++..|+.... -+.+ .....++.++|++..+||+|||+|++.||+
T Consensus 163 ---~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~----~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEs- 234 (1082)
T KOG1410|consen 163 ---DGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVD----LNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDES- 234 (1082)
T ss_pred ---CCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcc----cCcccHhHhhHHHHHHHHHhhhccccccccccccc-
Confidence 6789999999999999999999999999999987762 1111 123578999999999999999999999997
Q ss_pred cccccccccccccCCCCccccccccCCcccHHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhhHHHHHHHHHHhhcc
Q 001132 267 SINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLT 346 (1147)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~~~llf~ly~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl~ 346 (1147)
+||..++|+|++||..|.|++++++||++|..+| |+++..++.||+|+||+|
T Consensus 235 -----------------sed~ctVQIPTsWRs~f~d~stlqlfFdly~slp-----------~~~S~~alsclvqlASvR 286 (1082)
T KOG1410|consen 235 -----------------SEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLP-----------PELSELALSCLVQLASVR 286 (1082)
T ss_pred -----------------cccccceecCcHHHHHhcCchHHHHHHHHhccCC-----------chhhHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999875 568999999999999999
Q ss_pred cCccCCCChhhHHHHHHHHHHhhhhhcCChhHHHHHHHhCCChhhHHHHHHHHHHHHhccChhhhHhhhhccCcchhHHH
Q 001132 347 GTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTL 426 (1147)
Q Consensus 347 ~~~f~~~~~~~r~~yl~~~l~~i~~il~~~~~~~~~~~~g~~~~~~~e~cr~L~~l~~~~~~~~~~~~~~~~~q~~~l~~ 426 (1147)
+++|++.+ |.+|+.++++|+..|+++|..++ ++.+||||||+|+||++| ||+++|.+
T Consensus 287 RsLFN~ae---Ra~yl~~Lv~Gvk~il~np~~Ls-------D~~nyHeFCRllaRlktN-------------YQL~ELv~ 343 (1082)
T KOG1410|consen 287 RSLFNGAE---RAKYLQHLVEGVKRILENPQGLS-------DPANYHEFCRLLARLKTN-------------YQLGELVK 343 (1082)
T ss_pred HHHhCCHH---HHHHHHHHHHHHHHHHhCCcCCC-------CcchHHHHHHHHHHHHhh-------------hhhHhhhc
Confidence 99997766 99999999999999999876444 689999999999999665 68888888
Q ss_pred HHHHHHHHHHH---HhhcccccccchHHHHHHHHHHHHHhhhcccccCCCCCCChhhhhhHHHHHHHHHhcccccccccc
Q 001132 427 LSNLMCEVVKV---LMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASA 503 (1147)
Q Consensus 427 l~~lt~~~i~~---~~~~~~~~~~~~~es~~~lL~~W~~lv~~~~~~~~~~~~p~~~~~~~~~I~~~yi~srl~~~~~~~ 503 (1147)
+++ |.++|+. +++.+...|.|+++|++|||..|.+|+.++||+ +...||.+.+|+|+|.++||+||+..++...
T Consensus 344 v~~-Y~e~irLiAeFTv~SLq~wefa~nSvyyLlt~WqRmvaSVPyv--k~~~phlLd~y~PeIt~afi~SRl~sV~~iv 420 (1082)
T KOG1410|consen 344 VEC-YPEVIRLIAEFTVTSLQHWEFAPNSVYYLLTLWQRMVASVPYV--KNTEPHLLDTYCPEITKAFITSRLQSVEIIV 420 (1082)
T ss_pred cCC-cHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhcCCcc--cCCChHHHhhhcHHHHHHHHHHHhhhhheec
Confidence 877 7777665 455567779999999999999999999999995 5567888999999999999999999887544
Q ss_pred CCCCCcchhhhcchhHHHHHHHHHHHhhhhchhhhHHHHHHHHHHHHHHHhcc--cCCCCc-c-hHHH-HHHHHHHHHhh
Q 001132 504 MDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQG--RGMIDP-T-ETLE-ELYSLLLITGH 578 (1147)
Q Consensus 504 ~~~~d~~e~~~~d~~~~~eqL~~ia~l~R~~~~~t~~~L~~ll~~~~~~l~~~--~~~~~~-~-~~~E-~L~WLi~i~g~ 578 (1147)
.|+ -|++.||.+...+||+.++++|||.|+.||.+|+++|++..+.|++. +++.+. + .+.| +|.|+|+|+|+
T Consensus 421 --rd~-~d~PLdd~~~~~q~le~l~~icRceYEkTc~llvq~fdq~aqsyqe~~~~~s~~~~d~ai~EgrL~Wlv~lvgt 497 (1082)
T KOG1410|consen 421 --RDG-LDDPLDDTGAVQQQLEQLATICRCEYEKTCALLVQLFDQNAQSYQELLQNGSANDADIAIQEGRLVWLVYLVGT 497 (1082)
T ss_pred --ccC-CCCcchhhHHHHHHHHHhhhhhhhhHhhHHHHHHHHHhhhHHHHHHHhcccCCCchhHHHHhhhhhhhHHHhHH
Confidence 222 45677777889999999999999999999999999999999988653 233222 2 5566 99999999999
Q ss_pred HcccCCCCccccCchhhhhhhhhhhhccCCchHhHHHHHHHHHHhhcCcccccccCCHHHHHHHHHHHHHHHhhhcCccc
Q 001132 579 VLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLE 658 (1147)
Q Consensus 579 ~l~d~~~ge~~~iP~~i~~~~~~~~~~~~~~vv~Li~~ll~l~~~~l~~~~~~~~~Sp~l~~~~l~fl~~~~~~YL~~~~ 658 (1147)
++++...|... +.++++++|..++| .+++++.+.+++. + ...+++.+++||+.+|+++|++
T Consensus 498 vV~gk~t~~St--------d~~d~mDgEL~arv---lql~nlmdsr~~~--~---~n~rle~ail~f~eqFRk~Yvg--- 558 (1082)
T KOG1410|consen 498 VVGGKTTATST--------DEHDAMDGELSARV---LQLVNLMDSRLPL--K---GNERLELAILHFLEQFRKAYVG--- 558 (1082)
T ss_pred Hhcceeccccc--------chhhhhhhHHHHHH---HHHHHhhhcccch--h---hhHHHHHHHHHHHHHHHHHHHH---
Confidence 99988766444 56788999988888 8999999887643 2 3678999999999999999998
Q ss_pred cccccCCCcCCCCCccccchhhHhHHHHhhcCCCCchhHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHhhcccccc
Q 001132 659 EFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCV 738 (1147)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~s~~v~~~l~~~fg~~~~g~~vl~~~l~~i~~~L~~w~~e~~v~~~t~~~LL~~L~~~~~~~~ 738 (1147)
|+. .++++++.++.+.+|. ++..+++++|+.||.+||++|++.++|++.++ .||++|+.+++.++
T Consensus 559 DQ~-------------~rsSkvY~rl~e~Lgi-~de~~~L~viv~KI~TNLK~w~~~e~vi~~tL-slf~dLs~GY~~~k 623 (1082)
T KOG1410|consen 559 DQI-------------QRSSKVYARLSEVLGI-TDESDVLGVIVGKILTNLKYWGRNEPVISLTL-SLFNDLSLGYSAVK 623 (1082)
T ss_pred HHH-------------HHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhhcccccCCchHHHHHH-HHHHHHhhhHHHHH
Confidence 655 3477899999999998 68899999999999999999999999999999 89999999999999
Q ss_pred hhhccchHHHHHHHhhchhhhhcccc------hhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhhCCCccc
Q 001132 739 HLVALGSWRELASAFANDKTLILLNS------TNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLK 812 (1147)
Q Consensus 739 ~l~~~~~~~~l~~~~~~~~~~~~l~~------~~~~~l~~al~~~~~~~~~~~~~~~~~~~~m~p~~~~~~~l~~~~~~~ 812 (1147)
+|+++|.++.+++||.++|++|.-+. ..|++||.++++++. .|.++++..|++||.|++..|+.+++..+.+
T Consensus 624 kL~kl~~VqfmlnNHT~ehF~FLg~~~~~~~~r~RTTFY~al~rLl~--~d~sede~~fe~fm~PLt~~fe~v~~~~~nn 701 (1082)
T KOG1410|consen 624 KLVKLDAVQFMLNNHTSEHFPFLGINIDLQDMRCRTTFYTALTRLLM--VDLSEDEDMFERFMLPLTDAFEGVLQVFQNN 701 (1082)
T ss_pred HHhcchhhhhHhcccchhhCcccccCccchhhhhHhHHHHHHHHHHh--hcccccHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999886332 367889999999865 4556678899999999999999888664432
Q ss_pred ccccchhHHHHHHHHHHHhhhhhhccCCC-cHHHHHHHHHhh-HHHHHHHHHHhccchHHHHHHHHHHHHHhhccccccc
Q 001132 813 NVSQQPDIILLVSCLLERLRGAANATEPR-TQKAIYEMGFSV-MNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLE 890 (1147)
Q Consensus 813 ~~~~~~~ii~~~~~ll~~lrGi~~a~~~~-~~~~l~~~l~~~-~~~~~~ll~~y~~~~~vv~~iLkl~~e~v~n~~~~l~ 890 (1147)
...+.+++..++|++|||||||.|.+++ +|.++|+|+||. +|++...++.|.++|+|++|||||++|+|+|+++|+.
T Consensus 702 -~f~ee~vK~~liGL~RDLRGiA~A~~tktsy~~LFdWmYP~~mpllq~~Ve~W~~~p~vtTPiLklmaE~v~NrsQRL~ 780 (1082)
T KOG1410|consen 702 -CFEEEQVKRILIGLCRDLRGIAFASNTKTSYQMLFDWMYPEYMPLLQRAVEKWYGCPDVTTPILKLMAELVQNRSQRLK 780 (1082)
T ss_pred -cccHHHHHHHHHHHHHHhhhhhhhhccchHHHHHHHHhhhhHHHHHHHHHHhcCCCCccccHHHHHHHHHHhhhHhhee
Confidence 3567889999999999999999999988 789999999999 9999999999999999999999999999999999999
Q ss_pred cc----chhhHHHHHHHHHHHhhcC------------------------------------ccceeEccCCchhhhhhch
Q 001132 891 VQ----ETNIVIDFCTRLLQLYSSH------------------------------------NIGKVDFSSDSIEAQAINI 930 (1147)
Q Consensus 891 ~~----~~~~l~~~~~~li~~y~~~------------------------------------~~g~~~l~~d~~~~~~l~~ 930 (1147)
|+ +|++|||+.+|++.+|+++ |+|+|.+|+|+..+++++.
T Consensus 781 Fd~SSpngiLLFrEtSKmv~~YG~riL~Lp~vskdqiY~~kyKgI~v~~siLk~AL~GnYv~FGVFrLYGD~~l~daL~~ 860 (1082)
T KOG1410|consen 781 FDVSSPNGILLFRETSKMVSIYGNRILQLPEVSKDQIYAEKYKGISVCFSILKNALSGNYVNFGVFRLYGDSALDDALQT 860 (1082)
T ss_pred cccCCCceeEEehhhhHHHHHHhhHhhcccCcchhhhHHHHhcCceehHHHHHHHhhcCccccceeeeeCchHHHHHHHH
Confidence 97 7899999999999999755 3689999999777777766
Q ss_pred hhHhhhhheeeecccccccccchhhHHhHHHHHHHHHhhchhhhhcCCHHHHHHHHHHHHhhccccCHHHHHHHHHHHHH
Q 001132 931 SQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRA 1010 (1147)
Q Consensus 931 ~~vv~~~l~~~ipli~~dll~yPkl~~~yf~Ll~~l~e~~~~~l~~L~~~~f~~ll~sl~~Gl~~~~~~I~~~~l~~l~~ 1010 (1147)
+.+|.+.||. .|+++|||+.++||.|++.+++.|+.++.+|+++.|.+++.||..||++.|+.|++.||.++|+
T Consensus 861 ----fvKm~lsIp~--sD~l~Y~Klsqsyy~llE~l~qdhm~Fi~nL~~~vfm~ll~Si~sGLt~lDt~v~ssccsslD~ 934 (1082)
T KOG1410|consen 861 ----FVKMLLSIPH--SDLLSYRKLSQSYYNLLEVLTQDHMPFITNLEPDVFMYLLRSISSGLTSLDTIVSSSCCSSLDT 934 (1082)
T ss_pred ----HHHHHhcCCH--HHHHhHHHHHHHHhhHHHHHHhccchhhhcCcHHHHHHHHHHHHhccchhhHHHHhHHHHHHHH
Confidence 6999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCccchhhhhccCCCC----CCCchhHHHHHHHHHHHHHHhhcCCCchHHHHhhhhHHHHhCCHHHHHH
Q 001132 1011 LASYHYKETGAGKVGLAAQAAGINNSN----GNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQR 1086 (1147)
Q Consensus 1011 l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~l~~ll~~il~~~~~~~~~~~~s~~Ll~LI~~~~~~f~~ 1086 (1147)
+++|+||+..++.++.....+++++.+ .+++|++++++|++++++++||||+||| ++||||++||++++++|..
T Consensus 935 i~tYlfk~itr~~~p~~~~~~tpa~~r~l~~i~q~Pdil~qml~tl~~ii~Fedc~nQW--SlSRPlLgLILi~E~~fSd 1012 (1082)
T KOG1410|consen 935 IVTYLFKRITRSTKPTRKVGMTPAGDRFLHAIQQHPDILQQMLSTLINIIMFEDCRNQW--SLSRPLLGLILINEKYFSD 1012 (1082)
T ss_pred HHHHHHHHHhccCCCcCcCCCChhHHHHHHHHHhChHHHHHHHHHHHHHHhHHhhcccc--cccchhhHHHhhhHHHHHH
Confidence 999999999876655443333333322 2677999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHhhcCCCCCCCcChhhHHHHHHHHHHHHHHhhhccc
Q 001132 1087 LGSELIERQANPPFKSRLANALQSLTSSNQLSSTLDRVNYQRFRKNLTNFLVEVRGFLR 1145 (1147)
Q Consensus 1087 l~~~li~~q~~~~~~~~l~~aF~~L~~~~~~~~~l~~~nr~~F~~nl~~F~~~vr~~L~ 1145 (1147)
++.+|+++|| +++||++..||++||.|++ +|++.|||||||+|++.||++|+-.|+
T Consensus 1013 lk~~l~ssQp-~dkqq~l~~cF~~LM~~ve--~nL~~KNrD~FTQNLt~FRrdv~~~lk 1068 (1082)
T KOG1410|consen 1013 LKASLTSSQP-YDKQQDLDMCFTNLMEGVE--RNLTVKNRDRFTQNLTRFRRDVALVLK 1068 (1082)
T ss_pred HHHHHhcCCC-cchhHHHHHHHHHHHHHHh--hcccccchhHHHHHHHHHHHHHHHHhc
Confidence 9999999998 9999999999999999855 999999999999999999999987665
No 2
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=100.00 E-value=8.3e-69 Score=594.23 Aligned_cols=916 Identities=14% Similarity=0.182 Sum_probs=647.6
Q ss_pred CcHHHHHHHHHHHHHHHHHhhCCCC--HHHHHHHHHhhhcCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhcccCCCC
Q 001132 23 ADLAKLQSIMHSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLT 100 (1147)
Q Consensus 23 ~d~~~l~~~~~~le~~~~~l~~~~~--r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~ 100 (1147)
-|++.||.++. .+|.+.+ ++||+++|+.|++.|++|+++.+||++|+.|.++|.|+++|.+.|+++|+.+|
T Consensus 11 LdiallDkVVt-------tfyqg~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~~pqskyiALs~LdklIttkWkllp 83 (1053)
T COG5101 11 LDIALLDKVVT-------TFYQGDGRKQEQAQRILTKFQELPDAWTKADYILNNSKLPQSKYIALSLLDKLITTKWKLLP 83 (1053)
T ss_pred cCHHHHHHHHH-------HhcCCCchhHHHHHHHHHHHHhCchHHHHHHHHHhcccCcchhhhHHHHHHHHHHhhhhhCC
Confidence 45666655554 4556555 58999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCC-----chhHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhccC-CChhhHHHHH
Q 001132 101 ADEKKSLIGFCLCFVMQHASSP-----EGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGI-HGVDTQFIGI 174 (1147)
Q Consensus 101 ~~~~~~lr~~ll~~l~~~~~~~-----~~~v~~~l~~~la~i~K~~W~~~~~~~~~~~~~~i~~~~~~~-~s~~~~~~~l 174 (1147)
.+.|.+||+|+++.+++++.+. .+++.+++..+++.|+|++||. .||+|+.++++..+.+ .-.++.++.|
T Consensus 84 ~~~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~----nWP~FIpeli~~S~~s~~vCeNnmivL 159 (1053)
T COG5101 84 EGMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPR----NWPTFIPELINVSQISMEVCENNMIVL 159 (1053)
T ss_pred cHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhccc----ccchhhHHHHhhccchHHHHhccHHHH
Confidence 9999999999999999987553 5899999999999999999998 7899999999987741 1134568999
Q ss_pred HHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcc
Q 001132 175 NFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILN 254 (1147)
Q Consensus 175 ~iL~~lv~E~s~~~ss~~~~~~~~h~k~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Ls 254 (1147)
++|++.|++||.. .++..+.+..|.++.-+ +++||.+|.++|+... ++++++++|+.+.++|.
T Consensus 160 klLsEEvFdfSae-----qmTq~k~~~LkNqm~~E-F~qIF~lc~qiLE~~~-----------~~SLi~ATLesllrfl~ 222 (1053)
T COG5101 160 KLLSEEVFDFSAE-----QMTQVKKRLLKNQMKIE-FPQIFGLCKQILEYSR-----------DESLIEATLESLLRFLE 222 (1053)
T ss_pred HHhHHHHHhccHH-----HHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHHHHh
Confidence 9999999999986 56666777777888776 9999999999998764 67899999999999999
Q ss_pred cccccCCCCCcccccccccccccccCCCCccccccccCCcccHHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhhHH
Q 001132 255 WDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVS 334 (1147)
Q Consensus 255 wdF~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~~~llf~ly~~~~~~~~~~~~~~~~~l~~~ 334 (1147)
|.+.++ ++++++++++.+.+... |..+..
T Consensus 223 wiPl~y---------------------------------------IfeTnIieLv~~~f~s~------------pd~r~~ 251 (1053)
T COG5101 223 WIPLDY---------------------------------------IFETNIIELVLEHFNSM------------PDTRVA 251 (1053)
T ss_pred hCchhH---------------------------------------HHHHHHHHHHHHHhccC------------CchhHH
Confidence 998875 67789999999887664 557999
Q ss_pred HHHHHHHHhhccc-CccCCCChhhHHHHHHHHHHhhh-hhcCChhHHHHHHHhCC-ChhhH-HHHHHHHHHHHhccChhh
Q 001132 335 ARKLIVQLCSLTG-TVFPSDNGKMQEHHLLQLLSGIL-EWVDPPDVVAQAIESGK-SESEM-LDGCRALLSIATVTTPFV 410 (1147)
Q Consensus 335 ~l~cL~qLasl~~-~~f~~~~~~~r~~yl~~~l~~i~-~il~~~~~~~~~~~~g~-~~~~~-~e~cr~L~~l~~~~~~~~ 410 (1147)
|++||+++++|.+ +.-+...++.-.-++++++..+. ..++..+++.+++.... ++..+ ..++..|+.+-+.+
T Consensus 252 tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~~~---- 327 (1053)
T COG5101 252 TLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSLYEVY---- 327 (1053)
T ss_pred HHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHHHHHH----
Confidence 9999999999974 33222222333445666665554 45555566666655332 33333 33444444443221
Q ss_pred hHhhhhccCcchhHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhcccc-------cCCCC---------
Q 001132 411 FDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDS-------TGRNV--------- 474 (1147)
Q Consensus 411 ~~~~~~~~~q~~~l~~l~~lt~~~i~~~~~~~~~~~~~~~es~~~lL~~W~~lv~~~~~-------~~~~~--------- 474 (1147)
.+++.+ . +..+.+-..+-+.+.+ +.+++ .|.|+.+|++|..+|.++-+ ...++
T Consensus 328 -~~lLE~----~--e~~e~llnah~YLiqi-SrIne---reiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s~ 396 (1053)
T COG5101 328 -ISLLEA----R--EMAENLLNAHGYLIQI-SRINE---REIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQ 396 (1053)
T ss_pred -HHHhcC----h--hHHHHHHHHHHHhhhh-hhccH---HHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccch
Confidence 111111 0 1111222333344322 45555 89999999999999987522 10000
Q ss_pred ---CCChhh--hhhHHHHHH-------HHHhccccccccccCCCCCcch--hh----hcchhHHHHHHHHHHHhhhhchh
Q 001132 475 ---VLPLEV--RNAAASLFA-------LIVESELKVASASAMDDNGEFN--YL----QASISAMDERLSSYALIARAAID 536 (1147)
Q Consensus 475 ---~~p~~~--~~~~~~I~~-------~yi~srl~~~~~~~~~~~d~~e--~~----~~d~~~~~eqL~~ia~l~R~~~~ 536 (1147)
..|.-. ......+|. -.+..+|..|+++...++|++| ++ -|+.+.|+.+.+++.++++++..
T Consensus 397 ~istnpn~~~~~pLrkhiY~~ilsqLrlvlienMvrPEEVliVendegEivRefvketDtI~lYksmRevLvyLthL~v~ 476 (1053)
T COG5101 397 AISTNPNQDSTKPLRKHIYIGILSQLRLVLIENMVRPEEVLIVENDEGEIVREFVKETDTIELYKSMREVLVYLTHLIVD 476 (1053)
T ss_pred hccCCcchhcccchHHHHHHHHHHHHHHHHHHcCCCcceEEEEECCCcHHHHHHhccccHhHHHHHHhhHHHHHhhhhhh
Confidence 011100 012334443 2377889999999888888888 33 34578999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhcccCCCCcc-hHHHHHHHHHH-HHhhHcccCCCCccccCchhhhhhhhhhhhccCCchHhHH
Q 001132 537 ATVPLLTRLFSERFARLHQGRGMIDPT-ETLEELYSLLL-ITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLC 614 (1147)
Q Consensus 537 ~t~~~L~~ll~~~~~~l~~~~~~~~~~-~~~E~L~WLi~-i~g~~l~d~~~ge~~~iP~~i~~~~~~~~~~~~~~vv~Li 614 (1147)
++..+++..+.... . +.+|+ ..++.|||+|+ |+|++ ... .|+.++|.++
T Consensus 477 Dte~~mi~Klarq~------d-g~EWsw~nlNtLcWAIGSISGam-sE~---------------------~EkrF~Vnvi 527 (1053)
T COG5101 477 DTEKYMIGKLARQL------D-GKEWSWNNLNTLCWAIGSISGAM-SEV---------------------NEKRFFVNVI 527 (1053)
T ss_pred hHHHHHHHHHHHHh------c-CCccchhhHhHHHHHHhcccchh-hhH---------------------HHHHHHHHHH
Confidence 99999998877544 2 34777 78899999995 44444 311 3567899999
Q ss_pred HHHHHHHHhhcCcccccccCCHHHHHHHHHHHHHHHhhhcCccccccccCCCcCCCCCccccchhhHhHHHHhhcCCCCc
Q 001132 615 GSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQG 694 (1147)
Q Consensus 615 ~~ll~l~~~~l~~~~~~~~~Sp~l~~~~l~fl~~~~~~YL~~~~~~~~~~~~~~~~~~~~~~s~~v~~~l~~~fg~~~~g 694 (1147)
..++.||+...+++++++ +++.+|+.+|+|++ || .++ |.+.++|+++|+++||+++.|
T Consensus 528 KdLL~LcemKrgKdnKAV-----vASnIMyvvGQYpR-FL----kah------------w~FLkTVv~KLFEFMhE~HEG 585 (1053)
T COG5101 528 KDLLALCEMKRGKDNKAV-----VASNIMYVVGQYPR-FL----KAH------------WSFLKTVVKKLFEFMHEDHEG 585 (1053)
T ss_pred HHHHHHHHHhhcCCcchh-----hecceeeeeccchH-HH----HHH------------HHHHHHHHHHHHHHHhhhhhh
Confidence 999999999888888887 88899999999997 77 556 778889999999999999999
Q ss_pred --hhHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHhhcccccchhhccchHHHHHHHhhchhhhhcccchhhHHHHH
Q 001132 695 --KPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQ 772 (1147)
Q Consensus 695 --~~vl~~~l~~i~~~L~~w~~e~~v~~~t~~~LL~~L~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~l~~ 772 (1147)
+|+||+|++++.+|..+|-...+ . -.-|++..++.+... ..-.|.|.+++++|+
T Consensus 586 vqDMACDtFiKIvqKC~~hFv~Qq~-----g-----------------esEpFI~~Iirnl~k--tT~dL~pqQ~htfYe 641 (1053)
T COG5101 586 VQDMACDTFIKIVQKCPVHFVTQQE-----G-----------------ESEPFIVYIIRNLPK--TTGDLEPQQKHTFYE 641 (1053)
T ss_pred HHhhhHHHHHHHHHhCcHHHhhcCC-----C-----------------CCCcHHHHHHHhhhh--hcccCChHHHhHHHH
Confidence 89999999999999988822111 0 013556666666543 233478888999999
Q ss_pred HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhhCCCccc-ccccchhHHHHHHHHHHHhhhhhhccCCCcHHHHHHHHH
Q 001132 773 TLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLK-NVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGF 851 (1147)
Q Consensus 773 al~~~~~~~~~~~~~~~~~~~~m~p~~~~~~~l~~~~~~~-~~~~~~~ii~~~~~ll~~lrGi~~a~~~~~~~~l~~~l~ 851 (1147)
|+|++++..+...+..+..-.+|..++..|..+..+++-+ +.+.++.+.+-.-+.+...-..|.+.+.+.|
T Consensus 642 Acg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv~qa~~n~~~L~d~~tvki~an~~ktnVa~ctslg~~fy-------- 713 (1053)
T COG5101 642 ACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIVIQADENINRLSDTMTVKIDANKMKTNVAKCTSLGYRFY-------- 713 (1053)
T ss_pred HHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhhcccccc--------
Confidence 9999999876655667778999999999999987554433 4456677777777888888888888776543
Q ss_pred hh-HHHHHHHHHHhccchHHHHHHHHHHHHHhhccccc--cccc--chhhHHHHHHHHHHHhhcCc--c---c-ee----
Q 001132 852 SV-MNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISY--LEVQ--ETNIVIDFCTRLLQLYSSHN--I---G-KV---- 916 (1147)
Q Consensus 852 ~~-~~~~~~ll~~y~~~~~vv~~iLkl~~e~v~n~~~~--l~~~--~~~~l~~~~~~li~~y~~~~--~---g-~~---- 916 (1147)
|. ...+-.++..|...+..+. +.|.-.+.- -.+. ..+.+.+++++++.+|.++. . + .+
T Consensus 714 Pq~~~~y~~ml~ly~avs~~Is-------~~vaaeg~iatktp~vrglrtiKkEIlkLv~tyIska~dl~~V~n~lv~~l 786 (1053)
T COG5101 714 PQTCSSYCIMLFLYFAVSFDIS-------NSVAAEGLIATKTPAVRGLRTIKKEILKLVATYISKARDLKFVQNDLVNML 786 (1053)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-------HHHHhcccccccCccccchHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 33 4555566666655554443 222222111 1111 34789999999999997652 1 1 00
Q ss_pred ---EccC------CchhhhhhchhhHhhhh----------------heeeecccccccccchhhHHhHHHHHHHHHhhch
Q 001132 917 ---DFSS------DSIEAQAINISQVVFFG----------------LHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYP 971 (1147)
Q Consensus 917 ---~l~~------d~~~~~~l~~~~vv~~~----------------l~~~ipli~~dll~yPkl~~~yf~Ll~~l~e~~~ 971 (1147)
++.+ |...++.+++...++.+ +.|++.||..|+-+||+++++||.|++.+...++
T Consensus 787 ~eaVl~DY~nNvPdardaevLnl~ttiV~~v~~~i~~~~~l~l~svf~ctl~mi~kdf~EypEhr~~f~~Ll~~inl~sF 866 (1053)
T COG5101 787 CEAVLFDYKNNVPDARDAEVLNLGTTIVRNVESVIYLQRELFLISVFICTLIMIVKDFDEYPEHRKNFLLLLENINLFSF 866 (1053)
T ss_pred HHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhHHHHHhhhhhChHHHHHHHHHHHHHHHHhH
Confidence 2222 22334555554444333 4688889999999999999999999999999999
Q ss_pred hhhhcCCHHHHHHHHHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhh-----c-cCCCCC-----CC
Q 001132 972 ETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAA-----G-INNSNG-----NP 1040 (1147)
Q Consensus 972 ~~l~~L~~~~f~~ll~sl~~Gl~~~~~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~-----~~ 1040 (1147)
..+.++|++.|+.++.+|.|+++|..++|...+++++..+...+... | ++...+.. . .++... ..
T Consensus 867 ~afl~~p~p~Fklv~nti~wsfkhi~RDv~~~gLnill~l~kn~~~m---g-~~~~n~F~~~yy~s~l~~il~vltDsDh 942 (1053)
T COG5101 867 SAFLSFPQPSFKLVYNTILWSFKHINRDVSDLGLNILLILFKNCHEM---G-VPFINQFYAQYYMSTLENILGVLTDSDH 942 (1053)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHhccchHhhhhhHHHHHHHHHHHHh---C-CchHHHHHHHHHHHHHHHHHeeeeccch
Confidence 99999999999999999999999999999999999998887766442 1 11111000 0 000000 00
Q ss_pred chhHHHHH--HHHHHHHHHhhcCCCchHHHHhhhhHHHHhCCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHhhcCCCC
Q 001132 1041 EEGVLSRF--LRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQ-ANPPFKSRLANALQSLTSSNQL 1117 (1147)
Q Consensus 1041 ~~~~l~~~--l~~ll~~il~~~~~~~~~~~~s~~Ll~LI~~~~~~f~~l~~~li~~q-~~~~~~~~l~~aF~~L~~~~~~ 1117 (1147)
..++=++. +..++.+ -+| | ..|-|+|.=|-.+.-..+++...+.... | .-.|+.++.--..|..- +
T Consensus 943 KsgF~~Q~Llla~li~l--v~d--n----kisVPlyd~~~~n~~~lseyi~~l~~~sfp-~it~e~v~~f~~~l~~~-~- 1011 (1053)
T COG5101 943 KSGFDQQCLLLAFLIRL--VKD--N----KISVPLYDGINPNITILSEYIVGLFVKSFP-NITQESVKIFSVGLFEL-C- 1011 (1053)
T ss_pred hccchHHHHHHHHHHHH--Hhc--c----ccccccccCCCCchhhHHHHHHHHHHhhcC-cccHHHHHHHHHHHHHH-h-
Confidence 00111111 1122221 122 2 2456666666667777888777766654 4 33444444443444431 1
Q ss_pred CCCcChhhHHHHHHHHHHHHHHhhhc
Q 001132 1118 SSTLDRVNYQRFRKNLTNFLVEVRGF 1143 (1147)
Q Consensus 1118 ~~~l~~~nr~~F~~nl~~F~~~vr~~ 1143 (1147)
..-.-|...+..|+..|..+
T Consensus 1012 ------~d~~ifk~~~~df~vkv~e~ 1031 (1053)
T COG5101 1012 ------GDDEIFKEHVEDFRVKVYEF 1031 (1053)
T ss_pred ------CcHHHHHHHHHHHhhheeee
Confidence 23357899999999887654
No 3
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-63 Score=547.58 Aligned_cols=654 Identities=27% Similarity=0.304 Sum_probs=526.5
Q ss_pred hHHHHHHHHHH----HHH-hhhcccccCCCCCCChhhhhhHHHHHHHHHhcccccccccc--------C-CCCCcch--h
Q 001132 449 SWEARDILLDT----WTT-LLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASA--------M-DDNGEFN--Y 512 (1147)
Q Consensus 449 ~~es~~~lL~~----W~~-lv~~~~~~~~~~~~p~~~~~~~~~I~~~yi~srl~~~~~~~--------~-~~~d~~e--~ 512 (1147)
+.++.+.||+- |-. ++.+......+. .-+..+..+|++.|+++|+..+.... . +|+|.++ .
T Consensus 4 y~s~~d~Ll~s~~~~Wltnl~~~~~~~f~~~---Gf~~d~~V~v~n~~lq~hl~~~~ga~i~~an~V~~R~eee~~~l~~ 80 (748)
T KOG4541|consen 4 YASWCDVLLSSSHVGWLTNLYSSVRQKFDLE---GFWLDCPVAVSNRKLQVHLCSLAGAEIFPANNVQMRDEEELLLLTG 80 (748)
T ss_pred hHHHHHHHHhcCCcchHHHHHhhHHHHHhhh---hhHhhCcHHHHHHHHHHHhcccchhhcccccchhcccHHHHHhhcC
Confidence 46777777777 877 666532110111 12346789999999999998885411 1 1111111 1
Q ss_pred hhcchhHHHHHHHHHHHhhhhchhhhHHHHHHHHHHHHHHHhc----------ccCCCC-----cchHHHHHHHHHHHHh
Q 001132 513 LQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQ----------GRGMID-----PTETLEELYSLLLITG 577 (1147)
Q Consensus 513 ~~~d~~~~~eqL~~ia~l~R~~~~~t~~~L~~ll~~~~~~l~~----------~~~~~~-----~~~~~E~L~WLi~i~g 577 (1147)
.+||.+...+++...+..+|...+.+-+.. .+++..+.+++. ..|+.. ...+.|+.|||+++.|
T Consensus 81 ~edd~D~s~D~~~~~~~~gr~gae~c~~~~-~lle~~~t~lh~~~~~~~~~la~~GS~t~~s~~l~~~~eDqHWLmLVl~ 159 (748)
T KOG4541|consen 81 VEDDIDPSPDVISKEIEEGRSGAEMCDGCR-ALLEIGTTTLHVVFDQLLRSLAPFGSLTLLSMLLGEVVEDQHWLMLVLM 159 (748)
T ss_pred CCccCCcchhHHHHHHhcCchHHHHHHHHH-HHHHhcccccHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 134444467889999999999998888877 788877766652 113321 1367899999999999
Q ss_pred hHcccCCCCccccCchhhhhhhhh--------------------------hhhccCCchHhHHHHHHHHHHhhcCc--cc
Q 001132 578 HVLADEGEGEIPVVPNAIQTHFVD--------------------------TIEAAKHPVVLLCGSIIKFAEWSLDP--EA 629 (1147)
Q Consensus 578 ~~l~d~~~ge~~~iP~~i~~~~~~--------------------------~~~~~~~~vv~Li~~ll~l~~~~l~~--~~ 629 (1147)
..++|++.|+.+.+|..+..+... ...-+.|++|.+.++++.+.+.+++. ++
T Consensus 160 ~~~~dee~~~~~~~~~~~~~yt~~htsk~D~s~~~q~L~~~ge~~a~s~~~y~~e~d~~I~~~sa~~~~~~~e~~~v~a~ 239 (748)
T KOG4541|consen 160 ANSTDEETWSYEARDILLDTYTTLHTSKMDGSGGNQWLPPEGEHAAASLFSYIVESDLKIASASATTEDDADELASVSAM 239 (748)
T ss_pred HhccccccCCccCCCchHhhhhhhhcccccCCCcccccCCcccchhhhhhhhhhhcchHHHHhHHHhhhhHHHHHHHHHH
Confidence 999999999999998887776531 01225678899999999988766432 22
Q ss_pred ccccCCHHHHHHHHHHHHHHHhhhcCccccccccCCCcCCCCCccccchhhHhHHHHhhcCCCCc-hhHHHHHHHHHHHh
Q 001132 630 RASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQG-KPVLDIIVRISMTT 708 (1147)
Q Consensus 630 ~~~~~Sp~l~~~~l~fl~~~~~~YL~~~~~~~~~~~~~~~~~~~~~~s~~v~~~l~~~fg~~~~g-~~vl~~~l~~i~~~ 708 (1147)
...+.||++...+.||+.+|.++|....++++ +.. +..-..+|+..+.| .+.+.++++|++.+
T Consensus 240 ~~~l~Sp~l~~~l~rfl~a~~~~~~~~~~~~y------------~~~----s~~~~tv~p~~te~s~~~~~~ii~kVla~ 303 (748)
T KOG4541|consen 240 DERLGSPALIARLARFLDATIPFLAKLFSDHY------------ARL----SQGRGTVDPTETEESVYSLLLIIGKVLAD 303 (748)
T ss_pred HHhccCHHHHHHHHHHHHhhhhHHHHHhHHHH------------HHh----cCCCCCCCcccchhhHHHHHHHHHHHHHH
Confidence 22348999999999999999999887553433 221 12223455554555 79999999999999
Q ss_pred cccCCCchhHHHHHHHHHHHHHhhcccccchhhccchHHHHHHHhhchhhhhc-ccchhhHHHHHHHHHHHhcCCCCccc
Q 001132 709 LVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLIL-LNSTNQRSLAQTLVLSAYGMRNSESS 787 (1147)
Q Consensus 709 L~~w~~e~~v~~~t~~~LL~~L~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~l~~al~~~~~~~~~~~~~ 787 (1147)
+..|++|++++.+++ +.|-.++.+.+.....+.++.|+.++..+.+..+... +++..++.+|+++++.+++..|.++.
T Consensus 304 lvn~~sE~~L~~Da~-q~l~~lVe~~~~~~vvv~~e~~~~laeq~~s~~~~l~i~s~p~~~~lmkaLvl~gfa~~d~e~~ 382 (748)
T KOG4541|consen 304 LVNGESETALVPDAL-QSLFVLVEEANNHPVVVLSESIIKLAEQCLSAEMRLSIFSPPLMEALMKALVLWGFAYLDLEEE 382 (748)
T ss_pred HhcccchhhhhHHHH-HHHHHHHHHhccCCeeeccHHHHHHHHHHhccCCcccccCchHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999 8888999998888888889999999999887544332 56777999999999999988888889
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCcccccccchhHHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHhhHHHHHHHHHHhccc
Q 001132 788 NQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHE 867 (1147)
Q Consensus 788 ~~~~~~~m~p~~~~~~~l~~~~~~~~~~~~~~ii~~~~~ll~~lrGi~~a~~~~~~~~l~~~l~~~~~~~~~ll~~y~~~ 867 (1147)
.+++...++|+..||-..++++ ++.+++.+|+.-++.+.|++.|.+..++..+|++++....-|..+|+.|.+.
T Consensus 383 ~n~~~~~LqpL~~Rf~~~~nq~------~q~~~~~~Ii~~l~~~~g~a~a~q~d~~~~Lf~fL~~~~~~c~glm~s~~~~ 456 (748)
T KOG4541|consen 383 CNLGSNKLQPLPSRFFTYFNQH------NQGKFVLDIIVRLSLTSGTAYAGQKDLQRSLFQFLVLSAYGCRGLMASNQYV 456 (748)
T ss_pred HHHHHhhccccHHHHHHHhccc------chhhHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHhhhhhHHHHhhcc
Confidence 9999999999999999988776 3467888888999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhccccccccc-chhhHHHHHHHHHHHhhcCcccee---------------------------Ecc
Q 001132 868 SAVVYLLLKFVVDWVDGQISYLEVQ-ETNIVIDFCTRLLQLYSSHNIGKV---------------------------DFS 919 (1147)
Q Consensus 868 ~~vv~~iLkl~~e~v~n~~~~l~~~-~~~~l~~~~~~li~~y~~~~~g~~---------------------------~l~ 919 (1147)
+++|..|+..+.|+..+...|+..+ +++.+|..|+++.++|+..++|++ +|.
T Consensus 457 ~~~v~~i~~~~vdvs~k~~~y~~~e~~~~~ly~sclql~~~y~~~~~~r~rt~~a~~Ee~~sdl~lvl~lL~n~lskdF~ 536 (748)
T KOG4541|consen 457 KDLVAHITSSLVDVSNKSDLYNLAEQPDIILYVSCLQLERLYGAASATRPRTQRAIYEEGLSDLNLVLRLLENYLSKDFS 536 (748)
T ss_pred HHHHHHHHHHHHHhhhhhhhhccccChhHHHHHHHHHHHHHhhhhcccCcchHHHHHHhhhhHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999998854 689999999999999999887766 666
Q ss_pred CCchhhhhh-chhhHhhhhheeeecccccccccchhhHHhHHHHHHHHHhhchhhhhcCCHHHHHHHHHHHHhhccccCH
Q 001132 920 SDSIEAQAI-NISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDS 998 (1147)
Q Consensus 920 ~d~~~~~~l-~~~~vv~~~l~~~ipli~~dll~yPkl~~~yf~Ll~~l~e~~~~~l~~L~~~~f~~ll~sl~~Gl~~~~~ 998 (1147)
+++..++.. ..++||++|+++++|+||.++++|||+|.+||+++.+||+..|+++.++|.+.++.+++|+..||+.
T Consensus 537 ~~s~e~~~~~G~a~VV~~gl~~ilplm~~~lLk~P~lc~~~~~lIty~ce~~pe~la~~~~~l~~sl~qc~~LGMTg--- 613 (748)
T KOG4541|consen 537 SDSIETQSTNGIAQVVYFGLHIILPLMTLELLKYPKLCFDDVDLITYMCERAPEALASYHYKLKNSLNQCSGLGMTG--- 613 (748)
T ss_pred ccccccccccCcceEEEeeHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHhhccCCcc---
Confidence 665444444 3499999999999999999999999999999999999999999999999999999999999999993
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCCCCchhHHHH-HHHHHHHHHHhhcCCCchHHHHhhhhHHHH
Q 001132 999 EIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSR-FLRSLLQLLLFEDYSPDMVGTAADALFPLI 1077 (1147)
Q Consensus 999 ~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~ll~~il~~~~~~~~~~~~s~~Ll~LI 1077 (1147)
++...+|+..-+-+.++....++|.. .+.+.++.+ ||+++|+++++++|+++....++++||+||
T Consensus 614 e~~s~~l~~~~e~v~hfgspankgrc--------------TqnlafL~~efL~tvf~~ll~~~~~t~l~s~a~~Aly~LI 679 (748)
T KOG4541|consen 614 ESHSAGLHTDPEGVFHFGSPANKGRC--------------TQNLAFLSREFLRTVFHFLLFEDYSTDLVSTAADALYPLI 679 (748)
T ss_pred ccchHhhccChHhhhccccccccccc--------------cccHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 33444444444444444443333321 122445555 999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhhcCCCCCCCcChhhHHHHHHHHHHHHHHhhhccccC
Q 001132 1078 LCEPRLYQRLGSELIERQANPPFKSRLANALQSLTSSNQLSSTLDRVNYQRFRKNLTNFLVEVRGFLRTM 1147 (1147)
Q Consensus 1078 ~~~~~~f~~l~~~li~~q~~~~~~~~l~~aF~~L~~~~~~~~~l~~~nr~~F~~nl~~F~~~vr~~L~~~ 1147 (1147)
||+|..|++++++|+++|.||..+|||+.||.+||.+++ .++++|+||.+|++|+..|..+|.|+|+.+
T Consensus 680 ~~e~~~y~elvneL~skq~np~~~qrLa~Af~~Lt~sn~-~psldR~~~~~Frk~le~Fl~~V~Gllc~n 748 (748)
T KOG4541|consen 680 LCEPNLYQELVNELISKQANPNFKQRLANAFQVLTTSNQ-LPSLDRLNYQRFRKNLENFLVEVLGLLCLN 748 (748)
T ss_pred HhCHHHHHHHHHHHHhhccChHHHHHHHHHHHHHhccCC-CCCccHHHHHHHHHHHHHHHHHhhcccccC
Confidence 999999999999999999999999999999999999876 445999999999999999999999999875
No 4
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-42 Score=422.21 Aligned_cols=788 Identities=15% Similarity=0.169 Sum_probs=558.8
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccCCC-----
Q 001132 48 PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSP----- 122 (1147)
Q Consensus 48 r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~~~~lr~~ll~~l~~~~~~~----- 122 (1147)
|.+|++++.+|+..|++|..|..||+.|+++.++|||++.|++.|+.+|+.+|.++|.++|+|+...+....++.
T Consensus 29 r~eA~~~l~~lke~~~~~~~~~~iL~~s~~~~~k~f~Lqlle~vik~~W~~~~~~~r~glk~~v~~~~~~~~~~~~~~~~ 108 (1041)
T KOG2020|consen 29 RGEAQQILEELKEEPDSWLQVYLILKLSTNPILKYFALQLLENVIKFRWNSLPVEERVGLKNYVLTLIIEASPDEDVSET 108 (1041)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHhccCCchhheeeHHHHHHHHHHhcccCCccccHHHHHHHHHHHhhcCCcHhHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999999999998877655
Q ss_pred chhHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhccCCC-hhhHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHH
Q 001132 123 EGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHG-VDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQ 201 (1147)
Q Consensus 123 ~~~v~~~l~~~la~i~K~~W~~~~~~~~~~~~~~i~~~~~~~~s-~~~~~~~l~iL~~lv~E~s~~~ss~~~~~~~~h~k 201 (1147)
.+++++|++..++.|+|+.|+. .|++|+.++.+.+....+ .+..+..+.+|++.|++|++. .++..++.-
T Consensus 109 ~~~~~~kL~~i~Vqi~K~eWp~----~wp~~i~dl~~~s~~s~~~~el~m~Il~lLsEdvf~~ss~-----~~~q~~~~i 179 (1041)
T KOG2020|consen 109 EKHLLNKLNLILVQIVKREWPA----IWPTFIPDLAQSSKTSETVCELSMIILLLLSEEVFDFSSS-----ELTQQKIII 179 (1041)
T ss_pred HHHHHHHHhHHHHHHHHHHHHh----hcchhhhhHHHHhhcCcccchHHHHHHHHHHHHHhcccch-----HHHhhhHHH
Confidence 5899999999999999999998 799999999999875322 356688888999999999876 444556666
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcccccccCCCCCcccccccccccccccCC
Q 001132 202 CRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSS 281 (1147)
Q Consensus 202 ~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~~~~~d~~~~~~~~~~~~~~~~~~ 281 (1147)
.+.+.+. .+..||++|..+..++. .. ++.++|..+..+++|.+.++.
T Consensus 180 l~~~~~~-~f~~i~~l~~~~~~~a~-----------~~-~~~atl~tl~~fl~wip~~~I-------------------- 226 (1041)
T KOG2020|consen 180 LKNLLEN-EFQQIFTLCSYIKEKAN-----------SE-LLSATLETLLRFLEWIPLGYI-------------------- 226 (1041)
T ss_pred HHHHhhH-HHHHHHHHHHHHHhhhh-----------hH-HHHHHHHHHHHHhhcccHHHH--------------------
Confidence 6677776 49999999988765543 44 999999999999999998874
Q ss_pred CCccccccccCCcccHHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhhHHHHHHHHHHhhcccCccCCCChhhHHHH
Q 001132 282 SKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHH 361 (1147)
Q Consensus 282 ~~~~~~~~~~~p~~W~~~l~~~~~~~llf~ly~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl~~~~f~~~~~~~r~~y 361 (1147)
++.+.+..++..+.. .+.++..+++||.+++|..+.++... -..+
T Consensus 227 -------------------~~tn~l~~~l~~~ln------------~~~~r~~al~CL~ei~s~~~~~~~~~----~~~~ 271 (1041)
T KOG2020|consen 227 -------------------FETNILELLLNKFLN------------APELRNNALSCLTELLSRKRSIYERK----TVPM 271 (1041)
T ss_pred -------------------HHhhhHHHHHHhccc------------hHHHHHHHHHHHHHHHhccccchhHH----hHHH
Confidence 345556666655543 26789999999999999988744332 2345
Q ss_pred HHHHHHhhhhhcCChhHHHHHHHhCCChhh--H-HHHHHHHHHHHhccChhhhHhhhhccCcchhHHHHHHHHHHHHHHH
Q 001132 362 LLQLLSGILEWVDPPDVVAQAIESGKSESE--M-LDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVL 438 (1147)
Q Consensus 362 l~~~l~~i~~il~~~~~~~~~~~~g~~~~~--~-~e~cr~L~~l~~~~~~~~~~~~~~~~~q~~~l~~l~~lt~~~i~~~ 438 (1147)
++..+..+. .+.......+++..|...+. + ..+|..|..+...|. .++.+ .......+...+..++..
T Consensus 272 ~~~~~~~l~-~i~~~l~~~~~~~~~~~~dq~~fi~~l~~~l~~f~~~~~-----~lle~--~~~~~~~~~~~~~~li~i- 342 (1041)
T KOG2020|consen 272 FNLTIYQLR-SIPQDLDIPEVYSSLSDEDQDSFIEKLAQFLSLFFEQHI-----ALLES--SLSQRPVLLEALLELILI- 342 (1041)
T ss_pred HHHHHHHHH-HhhhhhchhhhhhcccHhHHHHHHHHHHHHHHHHHHHHH-----HHHcC--chhhhhHHHHHHHHHHHH-
Confidence 555555544 33333334445555543332 2 235555555543321 11111 000011111112222332
Q ss_pred hhcccccccchHHHHHHHHHHHHHhhhccccc-----CCCCCCChhh----hhhHHHHHHHH-------Hhccccccccc
Q 001132 439 MMNNTEEGTWSWEARDILLDTWTTLLVSLDST-----GRNVVLPLEV----RNAAASLFALI-------VESELKVASAS 502 (1147)
Q Consensus 439 ~~~~~~~~~~~~es~~~lL~~W~~lv~~~~~~-----~~~~~~p~~~----~~~~~~I~~~y-------i~srl~~~~~~ 502 (1147)
+..+. .+.+..+|++|..++.+..|. +-..+.|... .....++|+.| +..+|.+|+++
T Consensus 343 ---~~~~~---se~~~~~ld~W~~lv~~l~~~~~~ll~~s~~~~~~~~~~ri~~rk~~y~~~~~~~r~l~l~~m~~Pe~v 416 (1041)
T KOG2020|consen 343 ---STIEP---SEIFKICLDYWNKLVADLYYNKPPLLQLSTTLPSISDYSRIDFRKSIYQEFLSKLRLLRLERMAKPEEV 416 (1041)
T ss_pred ---hccCc---hhHHHHHHHHHHHHHHhhhcccccccccccccccccchhccchHHHHHHHHHHHHHHHHHHHhcCchhe
Confidence 34444 789999999999999987663 1111111100 01235666654 77889999988
Q ss_pred cCCCCCcch--hh--hc--chhHHHHHHHHHHHhhhhchhhhHHHHHHHHHHHHHHHhcccCCCCcc-hHHHHHHHHHH-
Q 001132 503 AMDDNGEFN--YL--QA--SISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPT-ETLEELYSLLL- 574 (1147)
Q Consensus 503 ~~~~~d~~e--~~--~~--d~~~~~eqL~~ia~l~R~~~~~t~~~L~~ll~~~~~~l~~~~~~~~~~-~~~E~L~WLi~- 574 (1147)
...++|.++ ++ .+ -...|....+..++++.++...+..+++..+..... |. .|. ...+.+||.++
T Consensus 417 live~~~~~~vre~~~~~~~~~ly~~~~e~l~~~~~L~~~~t~~~~~~kl~~~l~------~~-~~~~~~ln~l~~ai~s 489 (1041)
T KOG2020|consen 417 LIVENEQGEIVREFMKDHDFITLYPVLRETLVYLLHLDVVDTEKIMTEKLAIQLD------GD-EWSLHNLNRLCWAIGS 489 (1041)
T ss_pred eEEechHHHHHHHhccCcchhhhhHHHHHHHHHHHHhhhhhhhhhhhHhHHHHhh------HH-HHhhhhhhhHHHHHHH
Confidence 877777665 33 22 257799999999999999999999988877554431 11 232 46679999995
Q ss_pred HHhhHcccCCCCccccCchhhhhhhhhhhhccCCchHhHHHHHHHHHHhhcCcccccccCCHHHHHHHHHHHHHHHhhhc
Q 001132 575 ITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYL 654 (1147)
Q Consensus 575 i~g~~l~d~~~ge~~~iP~~i~~~~~~~~~~~~~~vv~Li~~ll~l~~~~l~~~~~~~~~Sp~l~~~~l~fl~~~~~~YL 654 (1147)
++|+++.+ .+.+.++.++.+++++|+...++++++. ++..+++..+++++ |+
T Consensus 490 isg~~~e~----------------------~e~k~~~~v~~d~l~l~E~~~~kdn~av-----i~~Ni~~vv~q~p~-Fl 541 (1041)
T KOG2020|consen 490 ISGRMLED----------------------MEKKFFVAVIRDLLNLCERKRGKDNKAV-----IASNIMYVVGQYPR-FL 541 (1041)
T ss_pred HHhhhHHH----------------------HHHHHHHHHHHHHHHHHHHhhcCCchhH-----HHHHHHHHhcccch-HH
Confidence 56655321 2345788999999999998877776665 77788888888875 66
Q ss_pred CccccccccCCCcCCCCCccccchhhHhHHHHhhcCCCCc--hhHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHhh
Q 001132 655 MPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQG--KPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVR 732 (1147)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~s~~v~~~l~~~fg~~~~g--~~vl~~~l~~i~~~L~~w~~e~~v~~~t~~~LL~~L~~ 732 (1147)
+.+ +.+++.++.++++++++.+.| +|.||+|++++.+|+.+| ++....
T Consensus 542 ----~~h------------~~~Lkt~~~~L~efmhe~h~gvqdmacd~F~~ii~~~~~~f-----v~~~~~--------- 591 (1041)
T KOG2020|consen 542 ----KAH------------WKFLKTVVHKLFEFMHETHEGVQDMACDTFIKIIQKCKRHF-----VITQLG--------- 591 (1041)
T ss_pred ----HHH------------HHHHHHHHHHHHHHHhhhhHHHHhhhHHHHHHHHHhhhhhh-----eeeccc---------
Confidence 444 556667889999999999998 899999999999999887 211111
Q ss_pred cccccchhhccchHHHHHHHhhchhhhhcccchhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhhCCC-cc
Q 001132 733 RKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKN-DL 811 (1147)
Q Consensus 733 ~~~~~~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~m~p~~~~~~~l~~~~-~~ 811 (1147)
-..|.+..+..+... ..-.+.+.+++.+|+++++++....++..++++...+|.-.+..|..++.++ +.
T Consensus 592 --------e~~~fv~~~~~~l~~--i~~~l~~~q~~~~~~al~~~V~~~~~~~~~~~~~~~~~vl~~~~~~nii~~~~~~ 661 (1041)
T KOG2020|consen 592 --------ETKPFVGELLLNLTA--ITEDLQPQQRHTFYEALGLMVSAEIDPAKAERLQSKLMVLPNRAWINIILQARCN 661 (1041)
T ss_pred --------ccccchHHHhhcccc--hhcCchHHHHHHHHHHHHHHHHHhCCHhhHHHHHhcccccchhhhcchhhcCccc
Confidence 123456566655432 2223567788999999998777777788888899999988889999976543 33
Q ss_pred cccccchhHHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHhh-HHHHHHHHHHhccchHHHHHHHHHHHHHhhccccccc
Q 001132 812 KNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSV-MNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLE 890 (1147)
Q Consensus 812 ~~~~~~~~ii~~~~~ll~~lrGi~~a~~~~~~~~l~~~l~~~-~~~~~~ll~~y~~~~~vv~~iLkl~~e~v~n~~~~l~ 890 (1147)
.....+.+.+..+..++..+..++.+.++.+. +. -.++.+.+.+|..++..+. ..+.+.+..-+
T Consensus 662 ~~~l~~~~~v~s~~~i~~~~~~~~~sl~~~f~--------~~~~~~~~d~~~l~~~~s~~v~-------~~~~~~~~~~t 726 (1041)
T KOG2020|consen 662 DEILKLLETVKSLLNILKTNSRALTSLGSTFV--------PQLGKIYLDMLQLYIKQSELVS-------INVTAGGSEKT 726 (1041)
T ss_pred HHhhcchHHHHHHHHHHHhHHHHHHhcCcccc--------cccccccHHHHHHHHHhccccc-------HHHhccccccc
Confidence 35667777777888888888888887776432 22 4556677777777776554 33333222221
Q ss_pred cc---c-hhhHHHHHHHHHHHhhcCccce----------------eEccC---Cchhhhhhc--------hhhH------
Q 001132 891 VQ---E-TNIVIDFCTRLLQLYSSHNIGK----------------VDFSS---DSIEAQAIN--------ISQV------ 933 (1147)
Q Consensus 891 ~~---~-~~~l~~~~~~li~~y~~~~~g~----------------~~l~~---d~~~~~~l~--------~~~v------ 933 (1147)
.+ + -+.+.+++.+++.+|....-+. |++-+ |-..+..+. .+..
T Consensus 727 ~~~~v~~~~svk~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~nvPd~r~~~vl~l~~~iv~~Lg~~i~~~~~ 806 (1041)
T KOG2020|consen 727 KTPFVKTLRSVKREILKLLETFISKSEQRDLYLLMLVPPLLDAVLFDYLDNVPDYRENEVLSLNATIVPKLGEFIPAELP 806 (1041)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccCcccchhHHHHhhhhHHHHHHHHHHHccCcchhcchHHHhhhhhhhhhhhHhhhhcc
Confidence 11 2 3678899999999887663110 00000 000111111 0000
Q ss_pred --hhhhheeeecccccccccchhhHHhHHHHHHHHHhhchhhhhcCCHHHHHHHHHHHHhhccccCHHHHHHHHHHHHHH
Q 001132 934 --VFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRAL 1011 (1147)
Q Consensus 934 --v~~~l~~~ipli~~dll~yPkl~~~yf~Ll~~l~e~~~~~l~~L~~~~f~~ll~sl~~Gl~~~~~~I~~~~l~~l~~l 1011 (1147)
...-+.+.+.|++.|+.+||+++..||.+++++.-.++..+.++|++.++.+..++.|.+.|..++|+..++.++..+
T Consensus 807 ~i~~~v~~c~l~m~~~d~qe~~e~~~~f~~lle~l~~~~~~~~~~l~~~~~~~~~~si~~~f~h~~r~i~~~~l~~l~~l 886 (1041)
T KOG2020|consen 807 LINIAVLECTLEMINKDFQEYPEHRLNFLLLLEALLLFCFPAFSELPADQVKLVSDSIVWAFHHTMRNIAENGLNILLEL 886 (1041)
T ss_pred HHHHHHHhhhhhccccccccchHHHHHHHHHHHHHHHhhhHHHHcCCchhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Confidence 011135778899999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred HHHHHh
Q 001132 1012 ASYHYK 1017 (1147)
Q Consensus 1012 ~~~~~~ 1017 (1147)
...+.+
T Consensus 887 ~k~~~~ 892 (1041)
T KOG2020|consen 887 LKNLAE 892 (1041)
T ss_pred HHHHHH
Confidence 765543
No 5
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=2.4e-25 Score=259.69 Aligned_cols=917 Identities=15% Similarity=0.102 Sum_probs=542.0
Q ss_pred HHHHHHHHHHHhhCCCC---HHHHHHHHHhhhcCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhcccCCCCHHHHHHH
Q 001132 31 IMHSIEIACSSIQMHVN---PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSL 107 (1147)
Q Consensus 31 ~~~~le~~~~~l~~~~~---r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~~~~l 107 (1147)
.++.+|.+..++|++++ .+.++++|...+++|++|+..+.+|+..+++.+|||+|.+|..+|.++|...|++++.+|
T Consensus 5 ~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~~evqyFGAltL~~ki~~~~e~~~~~~~~qL 84 (982)
T KOG2022|consen 5 LIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKSSEVQYFGALTLHDKINTRWEECPANEAVQL 84 (982)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCchhHHHHHhHHHHHHHHHhhhccCChhHHHHH
Confidence 57899999999999865 488999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhccCCCh-----hhHHHHHHHHHHHHh
Q 001132 108 IGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGV-----DTQFIGINFLESLVS 182 (1147)
Q Consensus 108 r~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~~~~~~i~~~~~~~~s~-----~~~~~~l~iL~~lv~ 182 (1147)
+.-++.-+...+ ..++.|.+|++..+|.++-.--+| .|+..+.+++..+..+.+| -+|.+.++.|+.+++
T Consensus 85 ~~klf~~l~~~~-g~~~lVl~kl~~sLasl~l~~~~d----~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~p~ 159 (982)
T KOG2022|consen 85 KLKLFLILSRFA-GGPKLVLNKLCASLASLILYMVPD----LWPTAIQDVIPTLQGQASPLVLADINCEILLEVLSFMPA 159 (982)
T ss_pred HHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHccc----cCCchHHHHHHHHhcccCccccchhhHHHHHHHhccCcH
Confidence 999999887775 469999999999999988655555 6788999999988754344 378999999999999
Q ss_pred hhCCCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHccccc-ccCC
Q 001132 183 EFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDF-QFDT 261 (1147)
Q Consensus 183 E~s~~~ss~~~~~~~~h~k~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF-~~~~ 261 (1147)
|+... .++..+....+. .|...-.....+++....+......+......-..+++|.. .|.- .+..
T Consensus 160 e~q~~-----~l~~t~~~~l~~-----eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~---~Wi~~i~~~ 226 (982)
T KOG2022|consen 160 EFQHV-----TLPLTRRSVLRG-----ELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVE---QWIRYISLT 226 (982)
T ss_pred hhhhc-----cchhHHHHHHHH-----HHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHH---HHHHHhccc
Confidence 99876 555555444443 23333333333444444321111111111122356777777 4553 2211
Q ss_pred CCCcccccccccccccccCCCCccccccccCCcccHHHhhccchHHHHHHHHHHhhh-cccCCC---CCCCchhhHHHHH
Q 001132 262 SGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQ-KFSSEG---YWLDCPIAVSARK 337 (1147)
Q Consensus 262 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~~~llf~ly~~~~~-~~~~~~---~~~~~~l~~~~l~ 337 (1147)
...+ ...++.+++.-...-+ ....+. +..+..++..++.
T Consensus 227 ~~~c-------------------------------------~~i~~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~ 269 (982)
T KOG2022|consen 227 GMDC-------------------------------------DQITQVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLL 269 (982)
T ss_pred cccH-------------------------------------HHHHHHHHHHHhhhccccccchhhhcccchhhhccchHH
Confidence 1000 1122333332111000 000000 0000011111111
Q ss_pred HHHHHhhcccCccCCCChhhHHHHHHHHHHhh---hhhcCChhHHHHHHHhCCC--hhhHHHHHHHHHHHHhccChhhhH
Q 001132 338 LIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGI---LEWVDPPDVVAQAIESGKS--ESEMLDGCRALLSIATVTTPFVFD 412 (1147)
Q Consensus 338 cL~qLasl~~~~f~~~~~~~r~~yl~~~l~~i---~~il~~~~~~~~~~~~g~~--~~~~~e~cr~L~~l~~~~~~~~~~ 412 (1147)
..+..+ -.++ -..|-+.+..-+ ..++...+...+.. .+.+ +++++.||++.....+|+.+-.+.
T Consensus 270 ~~v~~i-------~q~d---~~~y~nti~~li~i~~~~l~e~~~~~~~~-e~~d~~~e~i~~~~~i~v~~~En~l~~lid 338 (982)
T KOG2022|consen 270 ASVNDI-------IQPD---CEFYRNTITLLISICLGILQEVSGKIQEE-ENADASEEEIVTFLAITVSSVENHLPTLID 338 (982)
T ss_pred HHHHHh-------cChH---HHhccchHHHHHHHHHHHHHHHHHHHHHH-hCCCchhHHHHHHHHHHHHHHhcccHHHHH
Confidence 111110 0111 122333222211 11122112212222 2334 789999999999999998644444
Q ss_pred hhhhccCcchhHHHHHHHHHHHHHHH--hhcccccccchHHHHHHHHHHHHHhhhcccccCCCCCCChhhhhhHHHHHHH
Q 001132 413 RLLKSIRPFGTLTLLSNLMCEVVKVL--MMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFAL 490 (1147)
Q Consensus 413 ~~~~~~~q~~~l~~l~~lt~~~i~~~--~~~~~~~~~~~~es~~~lL~~W~~lv~~~~~~~~~~~~p~~~~~~~~~I~~~ 490 (1147)
..- .|+. .++....++.. +.+++.......-.....|+||..|.+++.... +...++.-..+..+||..
T Consensus 339 ~~~-----~g~~---~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~-~e~~~~~~~i~~~qIy~q 409 (982)
T KOG2022|consen 339 CAA-----QGEQ---SELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTI-NETQQIKKQILSQQIYAQ 409 (982)
T ss_pred HHh-----hcch---HHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhh-hccCCcchhHHHHHHHHH
Confidence 321 0111 12223333322 234555555545566778999999998775432 223444444567788887
Q ss_pred HHhcccccccc---ccCCCCCcchhhhcchhHHHHHHHHHHHhhhhchhhhHHHHHHHHHHHH-H----HHhccc--CCC
Q 001132 491 IVESELKVASA---SAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERF-A----RLHQGR--GMI 560 (1147)
Q Consensus 491 yi~srl~~~~~---~~~~~~d~~e~~~~d~~~~~eqL~~ia~l~R~~~~~t~~~L~~ll~~~~-~----~l~~~~--~~~ 560 (1147)
.++--+.|..- ..-..-..++ .||. ...|.+..++....+..+.+.. + .+.+.- |..
T Consensus 410 lvei~l~K~~~Ps~e~~~~W~S~s---------~e~F----~~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~ 476 (982)
T KOG2022|consen 410 LVEILLKKLALPSKEIWLSWSSDS---------REQF----ESYRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDE 476 (982)
T ss_pred HHHHHHHHhcCCCHHHhccCCcch---------HHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCC
Confidence 76655554432 1111111122 2334 3456666677776666665332 2 222221 222
Q ss_pred CcchHHHHHHHHHHHHhhHcccCCCCccccCchhhhhhhhhhhhccCCchHhHHHHHHHHHHhhcCcccccccCCHHHHH
Q 001132 561 DPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLME 640 (1147)
Q Consensus 561 ~~~~~~E~L~WLi~i~g~~l~d~~~ge~~~iP~~i~~~~~~~~~~~~~~vv~Li~~ll~l~~~~l~~~~~~~~~Sp~l~~ 640 (1147)
+| ..++++.-+++-.-.+..+.++.+.+.+|. +++.+- ..+.....|++..
T Consensus 477 ~p-~s~~~tEaci~~~~sva~~~~~t~~~~i~r-----------------------l~~~~a-----sik~S~~n~ql~~ 527 (982)
T KOG2022|consen 477 DP-DSLNRTEACIFQFQSVAEYLGETESTWIPR-----------------------LFETSA-----SIKLSAPNPQLLS 527 (982)
T ss_pred Cc-hHHHHHHHHHHHHHHHHhhcCcchhHHHHH-----------------------HHHhcc-----ccccccCChhHHH
Confidence 33 477788888877777755444334443332 333322 1122225799999
Q ss_pred HHHHHHHHHHhhhcCccccccccCCCcCCCCCccccchhhHhHHHHhhcCCCCchhHHHHHHHHHHHhcccCCCchhHHH
Q 001132 641 AIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQE 720 (1147)
Q Consensus 641 ~~l~fl~~~~~~YL~~~~~~~~~~~~~~~~~~~~~~s~~v~~~l~~~fg~~~~g~~vl~~~l~~i~~~L~~w~~e~~v~~ 720 (1147)
+.+..++..+. |++ ++.. +.-.+.+.|+...|.......+.
T Consensus 528 Tss~~igs~s~-~l~---e~P~-------------~ln~sl~~L~~~Lh~sk~s~q~i---------------------- 568 (982)
T KOG2022|consen 528 TSSDLIGSLSN-WLG---EHPM-------------YLNPSLPLLFQGLHNSKESEQAI---------------------- 568 (982)
T ss_pred HHHHHHHHHHH-HHh---cCCc-------------ccCchHHHHHHHhcCchHHHHHH----------------------
Confidence 99999999875 887 4331 11124566777776421111111
Q ss_pred HHHHHHHHHHhhcccccchhhccchHHHHHHHhhchh-hhhcccchhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHH
Q 001132 721 LTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDK-TLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHAT 799 (1147)
Q Consensus 721 ~t~~~LL~~L~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~~~l~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~m~p~~ 799 (1147)
.-|+.|++. |+. +++++-.=+.+.+.+. +.....++.+.++|+++|++.+... +++...|+.+++.|+-
T Consensus 569 ----~tl~tlC~~---C~~--~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~-pEe~~kyl~~lin~il 638 (982)
T KOG2022|consen 569 ----STLKTLCET---CPE--SLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLK-PEEIPKYLMKLINPIL 638 (982)
T ss_pred ----HHHHHHHHh---hhh--hCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhcc-HHhHHHHHHHHHHHHH
Confidence 123333332 222 3434322222211111 1122345667889999999998765 7888999999999999
Q ss_pred HHHHHhhCCCcccccccchhHHHHHHHHHHHhhhhhhccCCC---------cH-------HHHHHHHHhhHHHHHHHHHH
Q 001132 800 AYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPR---------TQ-------KAIYEMGFSVMNPVLLLLEV 863 (1147)
Q Consensus 800 ~~~~~l~~~~~~~~~~~~~~ii~~~~~ll~~lrGi~~a~~~~---------~~-------~~l~~~l~~~~~~~~~ll~~ 863 (1147)
..++..+... . .+++-...+...+-+...++.+...+ .. ..+.+++...++++.++++.
T Consensus 639 ~qle~~l~~~-i----~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~ 713 (982)
T KOG2022|consen 639 SQLEINLAPG-I----DDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSM 713 (982)
T ss_pred HHHHHhhcCC-C----CCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHH
Confidence 9887775442 1 11111111222222222222222111 01 16678888889999999999
Q ss_pred hccchHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHhhcC---ccc---eeEccCCc-hhhhhhchhhHhhh
Q 001132 864 YKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSH---NIG---KVDFSSDS-IEAQAINISQVVFF 936 (1147)
Q Consensus 864 y~~~~~vv~~iLkl~~e~v~n~~~~l~~~~~~~l~~~~~~li~~y~~~---~~g---~~~l~~d~-~~~~~l~~~~vv~~ 936 (1147)
|-++++|+..+++-+..-+.+-...+....--.++..+.+. .+...- .++ ...++.+. ..+-.......++.
T Consensus 714 ~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~-~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q 792 (982)
T KOG2022|consen 714 WLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRF-LTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQ 792 (982)
T ss_pred HhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHh-ccchHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH
Confidence 99999999999999888765543331111223455555552 111100 000 01222210 01111111122222
Q ss_pred hheeeecccccccccchhhHHhHHHHHHHHHhhchhhhhcCCHHHHHHHHH-HHHhhccccCHHHHHHHHHHHHHHHHHH
Q 001132 937 GLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLG-TLDFGLHHQDSEIVDMCLRALRALASYH 1015 (1147)
Q Consensus 937 ~l~~~ipli~~dll~yPkl~~~yf~Ll~~l~e~~~~~l~~L~~~~f~~ll~-sl~~Gl~~~~~~I~~~~l~~l~~l~~~~ 1015 (1147)
....+..- .-+...|++...+|.+++.+.+.+|.++... ...|+.++. +...+|++.++..++.+++++.+|+++.
T Consensus 793 ~sl~lf~~--~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~-~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~ 869 (982)
T KOG2022|consen 793 QSLLLFEQ--HPFSNQPDIYLQLIGFVRQILKKIPKFLEPS-MLAFTSLILICAFILLNSPEPTTIRAASQFLTALATYA 869 (982)
T ss_pred HHHHHHhc--cCCCCCchHHHHHHHHHHHHHHhCcCccccc-hHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhc
Confidence 22222222 3357789999999999999999999876433 356777777 9999999999999999999999999987
Q ss_pred HhhhcCCCccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHhhcCCCchHHHHhhhhHHHHhCCHHHHHHHHHHHHHcC
Q 001132 1016 YKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQ 1095 (1147)
Q Consensus 1016 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~il~~~~~~~~~~~~s~~Ll~LI~~~~~~f~~l~~~li~~q 1095 (1147)
+++.... ....+ .+.=+.++..+|..+ ++..++.-++.+++.|++|..-++..-..|..+.++..
T Consensus 870 ~s~~~~t---v~~~V-----------~~~G~~Li~~im~~v-gg~~~RS~ld~~aDIL~al~~k~~se~r~wl~~~lq~~ 934 (982)
T KOG2022|consen 870 TSHDLVT---VTSVV-----------AEIGPILIYAIMRGV-GGEASRSTLDALADILLALNAKFFSETRTWLKAVLQIP 934 (982)
T ss_pred ccchhHH---HHHHH-----------HhcchHHHHHHHHHh-cCcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 6633100 00001 112223577777766 67776667899999999999999999999999999543
Q ss_pred CCc--hHHHHHHHHHHHhhcCCCCCCCcChhhHHHHHHHHHHHHHHhhhcc
Q 001132 1096 ANP--PFKSRLANALQSLTSSNQLSSTLDRVNYQRFRKNLTNFLVEVRGFL 1144 (1147)
Q Consensus 1096 ~~~--~~~~~l~~aF~~L~~~~~~~~~l~~~nr~~F~~nl~~F~~~vr~~L 1144 (1147)
..| .........|.+.+. .+|-||+.|.+.+..|-.+.||+-
T Consensus 935 gfPs~~~s~e~k~rf~t~ll-------rer~n~R~~k~~il~~~L~~~~l~ 978 (982)
T KOG2022|consen 935 GFPSAGVSNEIKSRFVTSLL-------RERGNKRNFKQQILEFNLACTGLP 978 (982)
T ss_pred CCCcccCChHHHHHHHHHHH-------HHHhcHHHHHHHHHHHHHHhcCCC
Confidence 223 445777888988886 468999999999999999999874
No 6
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.6e-17 Score=183.07 Aligned_cols=518 Identities=56% Similarity=0.847 Sum_probs=348.5
Q ss_pred ccCCcccHHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhhHHHHHHHHHHhhccc-CccCCCChhhHHHHHHHHHHh
Q 001132 290 VQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTG-TVFPSDNGKMQEHHLLQLLSG 368 (1147)
Q Consensus 290 ~~~p~~W~~~l~~~~~~~llf~ly~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl~~-~~f~~~~~~~r~~yl~~~l~~ 368 (1147)
++|..+|-+.+++...+.|+-++|...++++..++-|.|+++........+++|++.| -+|+......|.+..-..++|
T Consensus 1 v~~y~s~~d~Ll~s~~~~Wltnl~~~~~~~f~~~Gf~~d~~V~v~n~~lq~hl~~~~ga~i~~an~V~~R~eee~~~l~~ 80 (748)
T KOG4541|consen 1 VKPYASWCDVLLSSSHVGWLTNLYSSVRQKFDLEGFWLDCPVAVSNRKLQVHLCSLAGAEIFPANNVQMRDEEELLLLTG 80 (748)
T ss_pred CcchHHHHHHHHhcCCcchHHHHHhhHHHHHhhhhhHhhCcHHHHHHHHHHHhcccchhhcccccchhcccHHHHHhhcC
Confidence 3577899999999999999999999988877666667888888887777899999998 678776655677777778888
Q ss_pred hhhhcCC-hhHHHHHHHhCCChhhHHHHHHHHHHHHhccChhhhHhhhhccCcchhHHHHHHHHH------HHHHHHhh-
Q 001132 369 ILEWVDP-PDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMC------EVVKVLMM- 440 (1147)
Q Consensus 369 i~~il~~-~~~~~~~~~~g~~~~~~~e~cr~L~~l~~~~~~~~~~~~~~~~~q~~~l~~l~~lt~------~~i~~~~~- 440 (1147)
..+..++ ++.+.-....|+...++...|+.+-...+....-.+...+.+....|....+..+.. +|+-.+.+
T Consensus 81 ~edd~D~s~D~~~~~~~~gr~gae~c~~~~~lle~~~t~lh~~~~~~~~~la~~GS~t~~s~~l~~~~eDqHWLmLVl~~ 160 (748)
T KOG4541|consen 81 VEDDIDPSPDVISKEIEEGRSGAEMCDGCRALLEIGTTTLHVVFDQLLRSLAPFGSLTLLSMLLGEVVEDQHWLMLVLMA 160 (748)
T ss_pred CCccCCcchhHHHHHHhcCchHHHHHHHHHHHHHhcccccHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776 555554445555556666777765544332211144433344444444433333222 44444444
Q ss_pred cccccccchHHHHHHHHHHHHHhhhc-ccccCCCCCCChhhhhhHHHHHHHHHhccccccccccCCCCCcchhhhcchhH
Q 001132 441 NNTEEGTWSWEARDILLDTWTTLLVS-LDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISA 519 (1147)
Q Consensus 441 ~~~~~~~~~~es~~~lL~~W~~lv~~-~~~~~~~~~~p~~~~~~~~~I~~~yi~srl~~~~~~~~~~~d~~e~~~~d~~~ 519 (1147)
....++.|..++.+..+..|..+-.+ ++..+...-.|++.++.+..+++--+++-+.-..-++.-+++.+| .+....
T Consensus 161 ~~~dee~~~~~~~~~~~~~yt~~htsk~D~s~~~q~L~~~ge~~a~s~~~y~~e~d~~I~~~sa~~~~~~~e--~~~v~a 238 (748)
T KOG4541|consen 161 NSTDEETWSYEARDILLDTYTTLHTSKMDGSGGNQWLPPEGEHAAASLFSYIVESDLKIASASATTEDDADE--LASVSA 238 (748)
T ss_pred hccccccCCccCCCchHhhhhhhhcccccCCCcccccCCcccchhhhhhhhhhhcchHHHHhHHHhhhhHHH--HHHHHH
Confidence 34667788999999999999987766 443322223455555566777654445554443333222232222 112222
Q ss_pred HHHHHHHHHHhhhh--chhhhHHHHHHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHhhHcccC--CCCccccCchhh
Q 001132 520 MDERLSSYALIARA--AIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADE--GEGEIPVVPNAI 595 (1147)
Q Consensus 520 ~~eqL~~ia~l~R~--~~~~t~~~L~~ll~~~~~~l~~~~~~~~~~~~~E~L~WLi~i~g~~l~d~--~~ge~~~iP~~i 595 (1147)
..++|-.-+.+.|+ -...+.+.+..++....+++++..+..+|...-+..+-+.+|+|++|++- .++|+.+.|+.+
T Consensus 239 ~~~~l~Sp~l~~~l~rfl~a~~~~~~~~~~~~y~~~s~~~~tv~p~~te~s~~~~~~ii~kVla~lvn~~sE~~L~~Da~ 318 (748)
T KOG4541|consen 239 MDERLGSPALIARLARFLDATIPFLAKLFSDHYARLSQGRGTVDPTETEESVYSLLLIIGKVLADLVNGESETALVPDAL 318 (748)
T ss_pred HHHhccCHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCCCCCcccchhhHHHHHHHHHHHHHHHhcccchhhhhHHHH
Confidence 33444433333332 14667788888888888888776665566544445444449999999988 567999999998
Q ss_pred hhhhhhhhhccCCchHhHHHHHHHHHHhhcCcccccccCCHHHHHHHHHHHHHHHhhhcCccccccccCCCcCCCCCccc
Q 001132 596 QTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQH 675 (1147)
Q Consensus 596 ~~~~~~~~~~~~~~vv~Li~~ll~l~~~~l~~~~~~~~~Sp~l~~~~l~fl~~~~~~YL~~~~~~~~~~~~~~~~~~~~~ 675 (1147)
+-......+.+.+++|.++....++.+.+.+..++-..+||.+.+++||++-.|.-+|+-.+++...+. +
T Consensus 319 q~l~~lVe~~~~~~vvv~~e~~~~laeq~~s~~~~l~i~s~p~~~~lmkaLvl~gfa~~d~e~~~n~~~----------~ 388 (748)
T KOG4541|consen 319 QSLFVLVEEANNHPVVVLSESIIKLAEQCLSAEMRLSIFSPPLMEALMKALVLWGFAYLDLEEECNLGS----------N 388 (748)
T ss_pred HHHHHHHHHhccCCeeeccHHHHHHHHHHhccCCcccccCchHHHHHHHHHHHHHHHHhhHHHHHHHHH----------h
Confidence 777766666788999999999999999988777776678999999999999999999986553333221 1
Q ss_pred cchhhHhHHHHhhcCCCCchhHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHhhcccccchhhccchHHHHHHHhhc
Q 001132 676 QSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFAN 755 (1147)
Q Consensus 676 ~s~~v~~~l~~~fg~~~~g~~vl~~~l~~i~~~L~~w~~e~~v~~~t~~~LL~~L~~~~~~~~~l~~~~~~~~l~~~~~~ 755 (1147)
....+..+++.+|.+.+.|+...+++++.-.++...++++.+.... | ++++.
T Consensus 389 ~LqpL~~Rf~~~~nq~~q~~~~~~Ii~~l~~~~g~a~a~q~d~~~~----L-------------------f~fL~----- 440 (748)
T KOG4541|consen 389 KLQPLPSRFFTYFNQHNQGKFVLDIIVRLSLTSGTAYAGQKDLQRS----L-------------------FQFLV----- 440 (748)
T ss_pred hccccHHHHHHHhcccchhhHHHHHHHHHHHhccccccccchhHHH----H-------------------HHHHH-----
Confidence 2234567889999998888888888888888887777766654211 1 11111
Q ss_pred hhhhhcccchhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhhCCCcccccccchhHHHHHHHH-HHHhhhh
Q 001132 756 DKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCL-LERLRGA 834 (1147)
Q Consensus 756 ~~~~~~l~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~m~p~~~~~~~l~~~~~~~~~~~~~~ii~~~~~l-l~~lrGi 834 (1147)
..++.++|.+. ..+|.+..+.-+...+..+.+..+......+++++.-+.++ +.+++|.
T Consensus 441 ------------~~~~~c~glm~--------s~~~~~~~v~~i~~~~vdvs~k~~~y~~~e~~~~~ly~sclql~~~y~~ 500 (748)
T KOG4541|consen 441 ------------LSAYGCRGLMA--------SNQYVKDLVAHITSSLVDVSNKSDLYNLAEQPDIILYVSCLQLERLYGA 500 (748)
T ss_pred ------------HHHhhhhhHHH--------HhhccHHHHHHHHHHHHHhhhhhhhhccccChhHHHHHHHHHHHHHhhh
Confidence 13455555443 34566777777777777777665544344678888777777 8899999
Q ss_pred hhccCCCcHHHHHHHHHhhHHHHHHHHHHhccc
Q 001132 835 ANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHE 867 (1147)
Q Consensus 835 ~~a~~~~~~~~l~~~l~~~~~~~~~ll~~y~~~ 867 (1147)
..+..++++...++.-+..+..+.++++.|..-
T Consensus 501 ~~~~r~rt~~a~~Ee~~sdl~lvl~lL~n~lsk 533 (748)
T KOG4541|consen 501 ASATRPRTQRAIYEEGLSDLNLVLRLLENYLSK 533 (748)
T ss_pred hcccCcchHHHHHHhhhhHHHHHHHHHHHHhhh
Confidence 999999988888888777777777777766443
No 7
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=2.1e-12 Score=149.52 Aligned_cols=260 Identities=12% Similarity=0.086 Sum_probs=203.9
Q ss_pred HHHHHHHHHhhCC-CC---HHHHHHHHHhhhcCCCcHHHHHHHHhcC-CchhHHHHHHHHHHHHHhcccCCCCHHHHHHH
Q 001132 33 HSIEIACSSIQMH-VN---PAAAEATILGLCQSPQPYKACQFILENS-QVANARFQAAAAIRDAAMREWSFLTADEKKSL 107 (1147)
Q Consensus 33 ~~le~~~~~l~~~-~~---r~~Ae~~L~~f~~~~~~~~~~~~iL~~S-~~~~~~f~a~~~L~~~i~~~W~~l~~~~~~~l 107 (1147)
+.+|+|+.....| .| ++||-+++.+++.+|++|+.|..+|-++ +++.++||++++|.+.+....+.....+..-+
T Consensus 3 ddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne~nl~elqlv 82 (980)
T KOG2021|consen 3 DDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYNEANLNELQLV 82 (980)
T ss_pred hHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccCCHHHHHHH
Confidence 4567777766665 23 6999999999999999999999999777 77899999999999999988888999999999
Q ss_pred HHHHHHHHHhc-----cCCCchhHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhccCCChhhHHHHHHHHHHHHh
Q 001132 108 IGFCLCFVMQH-----ASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVS 182 (1147)
Q Consensus 108 r~~ll~~l~~~-----~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~l~iL~~lv~ 182 (1147)
|.-+..|+... ....|.|+++|+.++++-+.-..+++ .|.+||.++...+....-.+....-|++|.++=.
T Consensus 83 R~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~----~WnsfF~dlmsv~~~~s~~~~~dfflkvllaIds 158 (980)
T KOG2021|consen 83 RFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPD----CWNSFFDDLMSVFQVDSAISGLDFFLKVLLAIDS 158 (980)
T ss_pred HHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHhcccchhhHHHHHHHHHHhhh
Confidence 99999987642 12368999999999999999999998 7999999999887641112235677888888888
Q ss_pred hhCCCCCCCCCCCHHH---HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHccccccc
Q 001132 183 EFSPSTSSAMGLPREF---HEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQF 259 (1147)
Q Consensus 183 E~s~~~ss~~~~~~~~---h~k~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~~ 259 (1147)
|.... ++-.+.+. ....|..+|+.+.++|-+.-.++++.-.. .-++.+...+|+|+-+..||+=++
T Consensus 159 Eiad~---dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n--------~~npgl~~~cLdc~g~fVSWIdIn 227 (980)
T KOG2021|consen 159 EIADQ---DVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYEN--------IVNPGLINSCLDCIGSFVSWIDIN 227 (980)
T ss_pred Hhhhc---cccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhc--------cCCchHHHHHHHHHHHHhhhhhhh
Confidence 88665 34444444 55678899999999999988888865431 115578899999999999998655
Q ss_pred CCCCCcccccccccccccccCCCCccccccccCCcccHHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhhHHHHHHH
Q 001132 260 DTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLI 339 (1147)
Q Consensus 260 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~~~llf~ly~~~~~~~~~~~~~~~~~l~~~~l~cL 339 (1147)
- +.+...+.+++.+... .+++..|-.|+
T Consensus 228 L---------------------------------------IaNd~f~nLLy~fl~i-------------eelR~aac~ci 255 (980)
T KOG2021|consen 228 L---------------------------------------IANDYFLNLLYKFLNI-------------EELRIAACNCI 255 (980)
T ss_pred h---------------------------------------hhchhHHHHHHHHHhH-------------HHHHHHHHHHH
Confidence 3 3456688888877653 56899999999
Q ss_pred HHHhhcccCccCCCChhhHHHHHHHH
Q 001132 340 VQLCSLTGTVFPSDNGKMQEHHLLQL 365 (1147)
Q Consensus 340 ~qLasl~~~~f~~~~~~~r~~yl~~~ 365 (1147)
..+.|=+-+ +- ++...++.+
T Consensus 256 laiVsKkMk----P~--dKL~lln~L 275 (980)
T KOG2021|consen 256 LAIVSKKMK----PM--DKLALLNML 275 (980)
T ss_pred HHHHhcCCC----hh--HHHHHHHHH
Confidence 999886532 12 356666655
No 8
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=99.69 E-value=3.9e-16 Score=176.30 Aligned_cols=262 Identities=17% Similarity=0.248 Sum_probs=176.9
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHhhcCcc-----c--------eeEccC
Q 001132 854 MNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNI-----G--------KVDFSS 920 (1147)
Q Consensus 854 ~~~~~~ll~~y~~~~~vv~~iLkl~~e~v~n~~~~l~~~~~~~l~~~~~~li~~y~~~~~-----g--------~~~l~~ 920 (1147)
..++.+++++|..+++.+.....--++.+.+... ....+.+.|++++++++|.++.- . ..++.+
T Consensus 3 ~~i~~d~l~lY~~~s~~i~~~v~~~G~~~~~~~~---~~~lr~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~D 79 (319)
T PF08767_consen 3 GRIYLDMLNLYRAYSQIISQAVAESGEIATKTPK---VRLLRTIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGD 79 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-GGGGGSHH---HHHHHHHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCchhhccHH---HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999887333332332222110 01247899999999999976531 0 003333
Q ss_pred Cc------hhhhhhchhhHhhhhh----------------eeeecccccccccchhhHHhHHHHHHHHHhhchhhhhcCC
Q 001132 921 DS------IEAQAINISQVVFFGL----------------HIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLS 978 (1147)
Q Consensus 921 d~------~~~~~l~~~~vv~~~l----------------~~~ipli~~dll~yPkl~~~yf~Ll~~l~e~~~~~l~~L~ 978 (1147)
|. ..++++++..+++.++ .+++|||++|+.+||++|.+||+||+.+++.||..+.+||
T Consensus 80 Y~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp 159 (319)
T PF08767_consen 80 YQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLP 159 (319)
T ss_dssp HHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-
T ss_pred HhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCC
Confidence 32 3467777776766664 4799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHh
Q 001132 979 TEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLF 1058 (1147)
Q Consensus 979 ~~~f~~ll~sl~~Gl~~~~~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~il~ 1058 (1147)
++.|+.+++++.||++|.+++|+..||+++..+++.+.+ .++..... ...+.+-.+++.+|..+.-
T Consensus 160 ~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~----~~~~~~~~----------F~~~y~~~il~~if~vltD 225 (319)
T PF08767_consen 160 PEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK----TNPEFANQ----------FYQQYYLDILQDIFSVLTD 225 (319)
T ss_dssp HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-----SHHHHHH----------HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh----cCHHHHHH----------HHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999988 11111111 1135556677777876544
Q ss_pred hcCCCchHHHHhhhhHHHHhC----------------CHHHHHHHHHHHHHc-CCCchHHHHHHHHH-HHhhcCCCCCCC
Q 001132 1059 EDYSPDMVGTAADALFPLILC----------------EPRLYQRLGSELIER-QANPPFKSRLANAL-QSLTSSNQLSST 1120 (1147)
Q Consensus 1059 ~~~~~~~~~~~s~~Ll~LI~~----------------~~~~f~~l~~~li~~-q~~~~~~~~l~~aF-~~L~~~~~~~~~ 1120 (1147)
.++... ...-+..|..|+.. +.++-.++..+++.+ -| ...+...+.| ..|...
T Consensus 226 ~~Hk~g-f~~q~~iL~~Lf~~ve~~~i~~~l~~~~~~n~~~v~~~i~~~L~~~Fp--~l~~~qi~~fv~~Lf~~------ 296 (319)
T PF08767_consen 226 SDHKSG-FKLQSQILSNLFRLVESGSIQVPLFDPGMSNQEFVSEYIANLLSEAFP--NLSPKQIENFVQGLFEL------ 296 (319)
T ss_dssp TT-GGG-HHHHHHHHHHHHHHHHTT-SSSSSSSTTT-HHHHHHHHHHHHHHHH-T--TS-HHHHHHHHHHHHHT------
T ss_pred cccHHH-HHHHHHHHHHHHHHHHcccccccccCCCCccHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHh------
Confidence 444433 23456667777743 233444555455444 34 2333333333 334331
Q ss_pred cChhhHHHHHHHHHHHHHHhhhc
Q 001132 1121 LDRVNYQRFRKNLTNFLVEVRGF 1143 (1147)
Q Consensus 1121 l~~~nr~~F~~nl~~F~~~vr~~ 1143 (1147)
..++.+|+.++..|+..+|.+
T Consensus 297 --~~d~~~Fk~~lrDFlI~~kef 317 (319)
T PF08767_consen 297 --NNDPEKFKTHLRDFLIQLKEF 317 (319)
T ss_dssp --TT-HHHHHHHHHHHHHHHTST
T ss_pred --cCCHHHHHHHHHHHhhhhhhc
Confidence 246899999999999998865
No 9
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=3.2e-07 Score=113.35 Aligned_cols=146 Identities=20% Similarity=0.221 Sum_probs=128.1
Q ss_pred HHHHHHHHhhCCCC--HHHHHHHHHhhhcCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Q 001132 34 SIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFC 111 (1147)
Q Consensus 34 ~le~~~~~l~~~~~--r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~~~~lr~~l 111 (1147)
.|+++...+.+|.| |++||+.|...-..+.......+|+..+.++.++-+|+-.+|+.+++.|+.|+.+.|.+||.-+
T Consensus 5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~l 84 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNEVRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSL 84 (1075)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 45556666678766 8999999996655555899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCchhHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhCCC
Q 001132 112 LCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPS 187 (1147)
Q Consensus 112 l~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~l~iL~~lv~E~s~~ 187 (1147)
|.-+.+- ..+.||.|++.++|.|.|..-++ .|+..+.-+.+.+++ +++..+..++.||..+++-|+..
T Consensus 85 L~~~~~E---~~~~vr~k~~dviAeia~~~l~e----~WPell~~L~q~~~S-~~~~~rE~al~il~s~~~~~~~~ 152 (1075)
T KOG2171|consen 85 LEIIQSE---TEPSVRHKLADVIAEIARNDLPE----KWPELLQFLFQSTKS-PNPSLRESALLILSSLPETFGNT 152 (1075)
T ss_pred HHHHHhc---cchHHHHHHHHHHHHHHHhcccc----chHHHHHHHHHHhcC-CCcchhHHHHHHHHhhhhhhccc
Confidence 9987665 37899999999999999988766 799899999998875 57889999999999999999775
No 10
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.3e-08 Score=117.36 Aligned_cols=714 Identities=16% Similarity=0.187 Sum_probs=353.1
Q ss_pred cHHHHHHHHHHHHHHHHHhhCCCC--HHHHHHHHHhhhcCCCcHHHHHHHHhcCCc--hhHHHHHHHHHHHHHhcccCCC
Q 001132 24 DLAKLQSIMHSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILENSQV--ANARFQAAAAIRDAAMREWSFL 99 (1147)
Q Consensus 24 d~~~l~~~~~~le~~~~~l~~~~~--r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~--~~~~f~a~~~L~~~i~~~W~~l 99 (1147)
|.+-|+++++-++ .-.+|.. |+.+...+.+|+..|+--.+..+||-+.++ .-++-.|.-+|++-+.-+|..+
T Consensus 8 ~e~~l~ql~~lLk----~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~ 83 (885)
T KOG2023|consen 8 DEQGLQQLAQLLK----NSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSI 83 (885)
T ss_pred cHHHHHHHHHHHH----hccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCC
Confidence 3445544444443 3345432 688999999999999988888889966554 4677788889999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhccCCChhhHHHHHHHHHH
Q 001132 100 TADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLES 179 (1147)
Q Consensus 100 ~~~~~~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~l~iL~~ 179 (1147)
+++...-+|.-+++-+. +.++.||.-.-.++-.|+-.+-. .+|+..++.+.+.+.+ .+..+|.=+..-|+-
T Consensus 84 ~~~~~~yiKs~~l~~lg----d~~~lIr~tvGivITTI~s~~~~----~~wpelLp~L~~~L~s-~d~n~~EgA~~AL~K 154 (885)
T KOG2023|consen 84 PSEVLDYIKSECLHGLG----DASPLIRATVGIVITTIASTGGL----QHWPELLPQLCELLDS-PDYNTCEGAFGALQK 154 (885)
T ss_pred ChHHHHHHHHHHHhhcc----CchHHHHhhhhheeeeeeccccc----ccchhHHHHHHHHhcC-CcccccchhHHHHHH
Confidence 99888877777766542 34556666555555555543333 3677899999999874 234566666666666
Q ss_pred HHhhhCCC-CCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcccccc
Q 001132 180 LVSEFSPS-TSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQ 258 (1147)
Q Consensus 180 lv~E~s~~-~ss~~~~~~~~h~k~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~ 258 (1147)
+.|+-..- .+--...+.. -.+++++++.- . +..++-..++.|+.+++
T Consensus 155 IcEDsa~~lds~~~~rpl~-----------~mipkfl~f~~----h------------~spkiRs~A~~cvNq~i----- 202 (885)
T KOG2023|consen 155 ICEDSAQFLDSDVLTRPLN-----------IMIPKFLQFFK----H------------PSPKIRSHAVGCVNQFI----- 202 (885)
T ss_pred HHhhhHHHHhhhcccCchH-----------HhHHHHHHHHh----C------------CChhHHHHHHhhhhhee-----
Confidence 66554332 1101122221 12444444321 0 13345567777777543
Q ss_pred cCCCCCcccccccccccccccCCCCccccccccCCcccHHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhhHHHHHH
Q 001132 259 FDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKL 338 (1147)
Q Consensus 259 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~~~llf~ly~~~~~~~~~~~~~~~~~l~~~~l~c 338 (1147)
....+.- ++.=..+++.+|.+. .+ .+|+.+...-..
T Consensus 203 ~~~~qal---------------------------------~~~iD~Fle~lFala----nD-------~~~eVRk~vC~a 238 (885)
T KOG2023|consen 203 IIQTQAL---------------------------------YVHIDKFLEILFALA----ND-------EDPEVRKNVCRA 238 (885)
T ss_pred ecCcHHH---------------------------------HHHHHHHHHHHHHHc----cC-------CCHHHHHHHHHH
Confidence 2211100 001123445555443 11 347788877777
Q ss_pred HHHHhhcccCccCCCChhhHHHHHHHHHHhhhhhcCChhHHHHHHHhCCChhhHHHHHHHHHHHHhcc-ChhhhHhhhhc
Q 001132 339 IVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVT-TPFVFDRLLKS 417 (1147)
Q Consensus 339 L~qLasl~~~~f~~~~~~~r~~yl~~~l~~i~~il~~~~~~~~~~~~g~~~~~~~e~cr~L~~l~~~~-~~~~~~~~~~~ 417 (1147)
++-|--+|.+= -.-++.++++-+....+. .+++.=.|.|.....+++.- +...+..
T Consensus 239 lv~Llevr~dk--------l~phl~~IveyML~~tqd-----------~dE~VALEACEFwla~aeqpi~~~~L~p---- 295 (885)
T KOG2023|consen 239 LVFLLEVRPDK--------LVPHLDNIVEYMLQRTQD-----------VDENVALEACEFWLALAEQPICKEVLQP---- 295 (885)
T ss_pred HHHHHHhcHHh--------cccchHHHHHHHHHHccC-----------cchhHHHHHHHHHHHHhcCcCcHHHHHH----
Confidence 87777666321 233555555444333222 13454578888888888652 1111111
Q ss_pred cCcchhHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhcccccCCCCCCChhhhhhHHHHHHHHHhcccc
Q 001132 418 IRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELK 497 (1147)
Q Consensus 418 ~~q~~~l~~l~~lt~~~i~~~~~~~~~~~~~~~es~~~lL~~W~~lv~~~~~~~~~~~~p~~~~~~~~~I~~~yi~srl~ 497 (1147)
++ ..+..-++.. +...+++ -.||+ +.. .....|. -++ .|=-.|..+|..
T Consensus 296 -----~l---~kliPvLl~~--M~Ysd~D-------~~LL~-------~~e---eD~~vpD-ree---DIkPRfhksk~~ 344 (885)
T KOG2023|consen 296 -----YL---DKLIPVLLSG--MVYSDDD-------IILLK-------NNE---EDESVPD-REE---DIKPRFHKSKEH 344 (885)
T ss_pred -----HH---HHHHHHHHcc--Ccccccc-------HHHhc-------Ccc---ccccCCc-hhh---hccchhhhchhc
Confidence 11 2222222222 1111111 12221 000 0011111 001 111234445544
Q ss_pred ccccccCCCCC-cchhhhcc----hhHHHHHHHHHHHhhhhchhhhHHHHHHHHHHHHHHHhcccCCCCcchHHHHHHHH
Q 001132 498 VASASAMDDNG-EFNYLQAS----ISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSL 572 (1147)
Q Consensus 498 ~~~~~~~~~~d-~~e~~~~d----~~~~~eqL~~ia~l~R~~~~~t~~~L~~ll~~~~~~l~~~~~~~~~~~~~E~L~WL 572 (1147)
.-.+...+||| |||+++|| ...++--=..+..++..-.++.++.+.-++.+.. ++.+|- .+ .--
T Consensus 345 ~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L-------~~~~W~---vr-Eag 413 (885)
T KOG2023|consen 345 GNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHL-------SSEEWK---VR-EAG 413 (885)
T ss_pred cCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHc-------Ccchhh---hh-hhh
Confidence 33332222222 12111111 2223322222223333334455666655555443 222221 11 122
Q ss_pred HHHHhhHcccCCCCccccCchhhhhhhhhhhhccCCchHhHHHHHHHHHHhhcCcccccccCCHHHHHHHHHHHHHHHhh
Q 001132 573 LLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQT 652 (1147)
Q Consensus 573 i~i~g~~l~d~~~ge~~~iP~~i~~~~~~~~~~~~~~vv~Li~~ll~l~~~~l~~~~~~~~~Sp~l~~~~l~fl~~~~~~ 652 (1147)
|+..|++-.+.-+|-.|..| .||.-++.+.. +. .|-+.+-.-|.+.||.+
T Consensus 414 vLAlGAIAEGcM~g~~p~Lp-------------------eLip~l~~~L~-----DK-----kplVRsITCWTLsRys~- 463 (885)
T KOG2023|consen 414 VLALGAIAEGCMQGFVPHLP-------------------ELIPFLLSLLD-----DK-----KPLVRSITCWTLSRYSK- 463 (885)
T ss_pred HHHHHHHHHHHhhhcccchH-------------------HHHHHHHHHhc-----cC-----ccceeeeeeeeHhhhhh-
Confidence 44556662222233222222 23333343332 11 33466666799999975
Q ss_pred hcCccccccccCCCcCCCCCccccchhhHhHHHHhhcCCCCchhHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHhh
Q 001132 653 YLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVR 732 (1147)
Q Consensus 653 YL~~~~~~~~~~~~~~~~~~~~~~s~~v~~~l~~~fg~~~~g~~vl~~~l~~i~~~L~~w~~e~~v~~~t~~~LL~~L~~ 732 (1147)
|+..++ + +++. ++ ++.-+++++.. ++.+|.+.+| .-+..+-.
T Consensus 464 wv~~~~--~------------~~~f----~p-------------vL~~ll~~llD------~NK~VQEAAc-sAfAtleE 505 (885)
T KOG2023|consen 464 WVVQDS--R------------DEYF----KP-------------VLEGLLRRLLD------SNKKVQEAAC-SAFATLEE 505 (885)
T ss_pred hHhcCC--h------------Hhhh----HH-------------HHHHHHHHHhc------ccHHHHHHHH-HHHHHHHH
Confidence 886431 1 1111 11 22223333332 3355777777 45555543
Q ss_pred cccccchhhccchHHHHHHHhhchhhhhcccchhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhhCCCccc
Q 001132 733 RKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLK 812 (1147)
Q Consensus 733 ~~~~~~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~m~p~~~~~~~l~~~~~~~ 812 (1147)
. .+..|| |++..|++++... +.+...+.-..||.|+|..+-+....=....|++.+|.|+-++|+.+...
T Consensus 506 ~--A~~eLV--p~l~~IL~~l~~a--f~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~---- 575 (885)
T KOG2023|consen 506 E--AGEELV--PYLEYILDQLVFA--FGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDS---- 575 (885)
T ss_pred h--ccchhH--HHHHHHHHHHHHH--HHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcc----
Confidence 3 233443 5666777665421 11122222335888888765443322236789999999999999887432
Q ss_pred ccccchhHHHHHHHHHHHhhhhhhccCCCcHH---HHHHHHHhhHHHHHHHHHHhccchHHHHHHHHHHHHHhhcccccc
Q 001132 813 NVSQQPDIILLVSCLLERLRGAANATEPRTQK---AIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYL 889 (1147)
Q Consensus 813 ~~~~~~~ii~~~~~ll~~lrGi~~a~~~~~~~---~l~~~l~~~~~~~~~ll~~y~~~~~vv~~iLkl~~e~v~n~~~~l 889 (1147)
++++. -+|+++..|+.|.+..+.+ .+|+=.+..+..+...+..-.++|. +.
T Consensus 576 ----DKdLf----PLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~------------------~~ 629 (885)
T KOG2023|consen 576 ----DKDLF----PLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPT------------------VE 629 (885)
T ss_pred ----cchHH----HHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCcc------------------cc
Confidence 24444 9999999999999876431 2222222222222222222222222 22
Q ss_pred cccch--hhHHHHHHHHHHHhhcCccceeEccCCchhhhhhchhhHhhhhheeeecccccccccchhhHHhHHHHHHHHH
Q 001132 890 EVQET--NIVIDFCTRLLQLYSSHNIGKVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLL 967 (1147)
Q Consensus 890 ~~~~~--~~l~~~~~~li~~y~~~~~g~~~l~~d~~~~~~l~~~~vv~~~l~~~ipli~~dll~yPkl~~~yf~Ll~~l~ 967 (1147)
.+++- +.-...++.+.+-.+.+- -.+-.- .+-+++ .. .| + .| .-|++|.+-|.||.-++
T Consensus 630 ~pdkdfiI~sLDL~SGLaegLg~~i---e~Lva~---snl~~l-----ll-~C---~--~D--~~peVRQS~FALLGDlt 690 (885)
T KOG2023|consen 630 APDKDFIIVSLDLLSGLAEGLGSHI---EPLVAQ---SNLLDL-----LL-QC---L--QD--EVPEVRQSAFALLGDLT 690 (885)
T ss_pred CCCcceEEEeHHHHhHHHHHhhhch---HHHhhh---ccHHHH-----HH-HH---h--cc--CChHHHHHHHHHHHHHH
Confidence 22210 111112222222222110 000000 000111 00 01 1 11 35999999999999999
Q ss_pred hhchhhhhcCCHHHHHHHHHHHHhhccccCHHHHHHHHHHHHHHHHHHHhh
Q 001132 968 EVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKE 1018 (1147)
Q Consensus 968 e~~~~~l~~L~~~~f~~ll~sl~~Gl~~~~~~I~~~~l~~l~~l~~~~~~~ 1018 (1147)
..|++.+.--- +.|..++. .-+......++..++=++..++..+...
T Consensus 691 k~c~~~v~p~~-~~fl~~lg---~Nl~~~~isv~nNA~WAiGeia~k~g~~ 737 (885)
T KOG2023|consen 691 KACFEHVIPNL-ADFLPILG---ANLNPENISVCNNAIWAIGEIALKMGLK 737 (885)
T ss_pred HHHHHhccchH-HHHHHHHh---hcCChhhchHHHHHHHHHHHHHHHhchh
Confidence 99988874221 33444444 4555556778888888888888765543
No 11
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=6.5e-09 Score=119.17 Aligned_cols=334 Identities=16% Similarity=0.143 Sum_probs=204.8
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccCCCchhHHH
Q 001132 49 AAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQA 128 (1147)
Q Consensus 49 ~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~~~~lr~~ll~~l~~~~~~~~~~v~~ 128 (1147)
..|.++|.+||+++++|..|..||..-...++.+||+++++++|.+..+.+|+.+-.++|+-++..+.+-. +.++.++.
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~-~~~~~i~t 80 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQKCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELH-DHPDVIRT 80 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHH-hCCchHHH
Confidence 36899999999999999999999998888899999999999999999999999999999998888776654 34558999
Q ss_pred HHHHHHHHHH--HhhccCCCCCchhhHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHh
Q 001132 129 KISSVAAQLM--KRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISL 206 (1147)
Q Consensus 129 ~l~~~la~i~--K~~W~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~l~iL~~lv~E~s~~~ss~~~~~~~~h~k~~~sF 206 (1147)
+++..+|.+. -.+|. +.+.++++.... .+...+..|.+|..+++|+.+.++. .| -.| +..|
T Consensus 81 QL~vavA~Lal~~~~W~--------n~I~e~v~~~~~--~~~~~~~lLeiL~VlPEE~~~~~~~-~~----a~R--r~e~ 143 (559)
T KOG2081|consen 81 QLAVAVAALALHMPEWV--------NPIFELVRALSN--KHPAVPILLEILKVLPEETRDIRLT-VG----ANR--RHEF 143 (559)
T ss_pred HHHHHHHHHHHHhHhhc--------chHHHHHHHhhc--CCccHHHHHHHHHhCcHhhcchhhh-hh----hhh--HHHH
Confidence 9999998887 34554 466677776653 3333679999999999999876331 11 111 1234
Q ss_pred hhh---hhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcccccccCCCCCcccccccccccccccCCCC
Q 001132 207 ELD---YLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSK 283 (1147)
Q Consensus 207 ~~~---~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~~~~~d~~~~~~~~~~~~~~~~~~~~ 283 (1147)
.++ .-..+......+|+... ......+.++++++. ||--.+-.+-+.
T Consensus 144 ~~~l~~~~~~~L~~l~~lLe~~~---------l~~~~~l~~Vl~~l~---SWl~~~~~~~d~------------------ 193 (559)
T KOG2081|consen 144 IDELAAQVSKVLVFLSDLLERSD---------LKSSDDLEQVLRCLG---SWLRLHVFPPDQ------------------ 193 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHhhcC---------CChhhHHHHHHHHHh---hhhhhccCCHHH------------------
Confidence 333 22333333444444332 113567888888888 776533321000
Q ss_pred ccccccccCCcccHHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhhHHHHHHHHHHhhcccCccCCCChhhHHHHHH
Q 001132 284 RSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLL 363 (1147)
Q Consensus 284 ~~~~~~~~~p~~W~~~l~~~~~~~llf~ly~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl~~~~f~~~~~~~r~~yl~ 363 (1147)
+...--++.+.|..-. +.++-..+.+|+..+-.=. .+.+. .+ .|-.
T Consensus 194 ---------------v~a~~pLi~l~F~sl~-------------~~~lhe~At~cic~ll~~~----~~~~~-~~-~~~~ 239 (559)
T KOG2081|consen 194 ---------------VLASFPLITLAFRSLS-------------DDELHEEATECICALLYCS----LDRSE-GL-PLAA 239 (559)
T ss_pred ---------------HHhhhHHHHHHHHHcc-------------cchhhHHHHHHHHHHHHHh----hhhhc-cC-chhH
Confidence 1222235666665432 1346667888887753211 11111 11 2444
Q ss_pred HHHHhhhhhcCChhHHHHHHHhCCChhhHHHHHHHHHHHHhccChhhhHhhhhccCcchhHHHHHHHHHHHHHHHhhccc
Q 001132 364 QLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNT 443 (1147)
Q Consensus 364 ~~l~~i~~il~~~~~~~~~~~~g~~~~~~~e~cr~L~~l~~~~~~~~~~~~~~~~~q~~~l~~l~~lt~~~i~~~~~~~~ 443 (1147)
.++.+. .++++.-+...+ |-+.+.....||++..+...|- ...+..+.+++..+.. +-..+ ..
T Consensus 240 ~l~~~v-~~L~~~~~~a~~---~~d~d~~~a~~RIFtel~eaf~------~~i~~np~~~l~~vel-----lLl~~--~h 302 (559)
T KOG2081|consen 240 ILFIGV-IILETAFHLAMA---GEDLDKNEAICRIFTELGEAFV------VLISTNPEEFLRIVEL-----LLLVA--GH 302 (559)
T ss_pred HHhccc-cccchHHHHhhc---ccCHHHHHHHHHHHHHHHHHHH------HHHhhCCCcchhHHHH-----HHHhc--cC
Confidence 444443 466655555432 2245666678898888876431 1112222233322211 11111 11
Q ss_pred ccccchHHHHHHHHHHHHHhhhcccccCCCCCCChhhhhhHHHHHHHHHhc
Q 001132 444 EEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVES 494 (1147)
Q Consensus 444 ~~~~~~~es~~~lL~~W~~lv~~~~~~~~~~~~p~~~~~~~~~I~~~yi~s 494 (1147)
.+ .+...+-+.+|.++-+.+.-. + . .-+..+|++|...
T Consensus 303 -~~---~evie~SF~fW~~lse~l~~~-~---~-----~~~~~~frpy~~r 340 (559)
T KOG2081|consen 303 -ND---TEVIEASFNFWYSLSEELTLT-D---D-----DEALGIFRPYFLR 340 (559)
T ss_pred -Cc---hhhhhhhHHhhhhhHHHHhcc-c---c-----HHHHHHhHHHHHH
Confidence 12 388999999999988765321 0 1 1245677777443
No 12
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.93 E-value=9.3e-09 Score=103.72 Aligned_cols=148 Identities=16% Similarity=0.212 Sum_probs=117.0
Q ss_pred chhHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHH
Q 001132 123 EGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQC 202 (1147)
Q Consensus 123 ~~~v~~~l~~~la~i~K~~W~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~l~iL~~lv~E~s~~~ss~~~~~~~~h~k~ 202 (1147)
|++|++|++.++|.|+++.||+ .|+++++++.+.+.. ++.++..++.+|..+++|+...+ ....+.++++..
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~----~Wp~~l~~l~~~~~~--~~~~~~~~L~iL~~l~eEi~~~~--~~~~~~~r~~~l 72 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQ----QWPDFLEDLLQLLQS--SPQHLELVLRILRILPEEITDFR--RSSLSQERRREL 72 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTT----TSTTHHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHTSH--CCHSHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChh----hCchHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHhhh--chhhhHHHHHHH
Confidence 6899999999999999999998 788999999999985 78899999999999999997631 125566677777
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcccccccCCCCCcccccccccccccccCCC
Q 001132 203 RISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSS 282 (1147)
Q Consensus 203 ~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~~~~~d~~~~~~~~~~~~~~~~~~~ 282 (1147)
+..+++. .+.||....+++.+.... ....+...+|+++..+++|.....
T Consensus 73 ~~~l~~~-~~~i~~~l~~~l~~~~~~--------~~~~~~~~~L~~l~s~i~~~~~~~---------------------- 121 (148)
T PF08389_consen 73 KDALRSN-SPDILEILSQILSQSSSE--------ANEELVKAALKCLKSWISWIPIEL---------------------- 121 (148)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHCHC--------CHHHHHHHHHHHHHHHTTTS-HHH----------------------
T ss_pred HHHHHHH-HHHHHHHHHHHHHhhccc--------cHHHHHHHHHHHHHHHHHhCCHHH----------------------
Confidence 8878776 888888888877665421 126788999999999999876553
Q ss_pred CccccccccCCcccHHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhhHHHHHHH
Q 001132 283 KRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLI 339 (1147)
Q Consensus 283 ~~~~~~~~~~p~~W~~~l~~~~~~~llf~ly~~~~~~~~~~~~~~~~~l~~~~l~cL 339 (1147)
+.+.++++++|+... ++++...|.+||
T Consensus 122 -----------------i~~~~~l~~~~~~l~-------------~~~~~~~A~~cl 148 (148)
T PF08389_consen 122 -----------------IINSNLLNLIFQLLQ-------------SPELREAAAECL 148 (148)
T ss_dssp -----------------HHSSSHHHHHHHHTT-------------SCCCHHHHHHHH
T ss_pred -----------------hccHHHHHHHHHHcC-------------CHHHHHHHHHhC
Confidence 455668888887641 266899999997
No 13
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=0.0017 Score=77.64 Aligned_cols=132 Identities=14% Similarity=0.087 Sum_probs=101.2
Q ss_pred HHHHHHHHHhhhcCCC--cHHHHHHHHhcCC-chhHHHHHHHHHHHHHh-----------cccCCCCHHHHHHHHHHHHH
Q 001132 48 PAAAEATILGLCQSPQ--PYKACQFILENSQ-VANARFQAAAAIRDAAM-----------REWSFLTADEKKSLIGFCLC 113 (1147)
Q Consensus 48 r~~Ae~~L~~f~~~~~--~~~~~~~iL~~S~-~~~~~f~a~~~L~~~i~-----------~~W~~l~~~~~~~lr~~ll~ 113 (1147)
|++||+.|.+++++.- -....-.+|-+-+ +++++..|.-.|++.+. .+|-.++.+.|+++|++++.
T Consensus 18 ~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~ 97 (859)
T KOG1241|consen 18 RKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILR 97 (859)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7999999999997543 3455556665554 56999999999988765 68999999999999999998
Q ss_pred HHHhccCCCchhHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhCC
Q 001132 114 FVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSP 186 (1147)
Q Consensus 114 ~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~l~iL~~lv~E~s~ 186 (1147)
-+- ...+.+.+...+++|.|...+-|.. .|+.++..++..+...++..+..-.|+-+.-+.++..+
T Consensus 98 tL~----~~ep~~~s~Aaq~va~IA~~ElP~n---~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~p 163 (859)
T KOG1241|consen 98 TLG----SPEPRRPSSAAQCVAAIACIELPQN---QWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDP 163 (859)
T ss_pred HcC----CCCCCccchHHHHHHHHHHhhCchh---hCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCH
Confidence 762 2457778889999999998888862 78999999998886422233446667766666666654
No 14
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=0.005 Score=75.88 Aligned_cols=148 Identities=15% Similarity=0.256 Sum_probs=122.2
Q ss_pred CcHHHHHHHHHHHHHHHHHhhCCCC-HHHHHHHHHhhhcCCCcHHHHHHHHhcCCch-hHHHHHHHHHHHHHhcccCC--
Q 001132 23 ADLAKLQSIMHSIEIACSSIQMHVN-PAAAEATILGLCQSPQPYKACQFILENSQVA-NARFQAAAAIRDAAMREWSF-- 98 (1147)
Q Consensus 23 ~d~~~l~~~~~~le~~~~~l~~~~~-r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~-~~~f~a~~~L~~~i~~~W~~-- 98 (1147)
||.+.+ ++.+.+ ++-++++ |+.||+.|.++.+.|.-...|-+|.-....+ -|+--|+--++++|++.|+.
T Consensus 1 md~~~l---~~~~~~---T~d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~ 74 (1010)
T KOG1991|consen 1 MDLQSL---LQIFRA---TIDSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHE 74 (1010)
T ss_pred CChHHH---HHHHHH---hcCCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccC
Confidence 455554 344433 4444444 8999999999999999999988888777777 66999999999999999975
Q ss_pred -------CCHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhccCCChhhHH
Q 001132 99 -------LTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQF 171 (1147)
Q Consensus 99 -------l~~~~~~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~~~~~~i~~~~~~~~s~~~~~ 171 (1147)
+++++|.-+|+-++.++++. |..+|.++..++-.|+|...|+ .|+.+++.+...+++ ++..+..
T Consensus 75 ~~g~~~~I~e~dk~~irenIl~~iv~~----p~~iRvql~~~l~~Ii~~D~p~----~Wp~l~d~i~~~Lqs-~~~~~vy 145 (1010)
T KOG1991|consen 75 APGRPFGIPEEDKAVIRENILETIVQV----PELIRVQLTACLNTIIKADYPE----QWPGLLDKIKNLLQS-QDANHVY 145 (1010)
T ss_pred CCCCcCCCChHHHHHHHHHHHHHHHhC----chHHHHHHHHHHHHHHhcCCcc----cchhHHHHHHHHhcC-cchhhHH
Confidence 57899999999999998765 7899999999999999998886 799999999999985 3556778
Q ss_pred HHHHHHHHHHhhhC
Q 001132 172 IGINFLESLVSEFS 185 (1147)
Q Consensus 172 ~~l~iL~~lv~E~s 185 (1147)
-||-.|..|+.-+-
T Consensus 146 ~aLl~l~qL~k~ye 159 (1010)
T KOG1991|consen 146 GALLCLYQLFKTYE 159 (1010)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888887664
No 15
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.54 E-value=2.4e-07 Score=82.13 Aligned_cols=66 Identities=26% Similarity=0.344 Sum_probs=62.1
Q ss_pred HHHHHHhhhcC-CCcHHHHHHHH-hcCCchhHHHHHHHHHHHHHhcccC--------CCCHHHHHHHHHHHHHHHH
Q 001132 51 AEATILGLCQS-PQPYKACQFIL-ENSQVANARFQAAAAIRDAAMREWS--------FLTADEKKSLIGFCLCFVM 116 (1147)
Q Consensus 51 Ae~~L~~f~~~-~~~~~~~~~iL-~~S~~~~~~f~a~~~L~~~i~~~W~--------~l~~~~~~~lr~~ll~~l~ 116 (1147)
||+.|.+|++. |+.|..|..|+ +.+.+++++++|+.+|++.|.++|. .+|+++|..||+++++.+.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 89999999999 99999999999 5555789999999999999999999 9999999999999999875
No 16
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.00044 Score=82.55 Aligned_cols=163 Identities=11% Similarity=0.079 Sum_probs=127.1
Q ss_pred HHHHHHHHHHhhCCCC---HHHHHHHHHhhhcCCCcHHHHHHHHhcCCch-hHHHHHHHHHHHHHhcccC-----CCCHH
Q 001132 32 MHSIEIACSSIQMHVN---PAAAEATILGLCQSPQPYKACQFILENSQVA-NARFQAAAAIRDAAMREWS-----FLTAD 102 (1147)
Q Consensus 32 ~~~le~~~~~l~~~~~---r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~-~~~f~a~~~L~~~i~~~W~-----~l~~~ 102 (1147)
.+.|++| ++++ ++-||+.|.+..+.|.-......|.-+.++. .+++.|+--+++.|.|.|. .+|++
T Consensus 3 vq~Lq~A-----ts~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~E 77 (978)
T KOG1993|consen 3 VQVLQQA-----TSQDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPE 77 (978)
T ss_pred HHHHHHh-----cCCCcccchhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcCCcccCCHH
Confidence 4556666 4445 5999999999999999998888887777665 9999999999999999995 69999
Q ss_pred HHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhccC---CChhhHHHHHHHHHH
Q 001132 103 EKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGI---HGVDTQFIGINFLES 179 (1147)
Q Consensus 103 ~~~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~~~~~~i~~~~~~~---~s~~~~~~~l~iL~~ 179 (1147)
+|..||.-++....+ ....+..+...++++|++..+|- +||+.++++.+.++.+ |+...+.-++-.|..
T Consensus 78 EK~~iR~~Ll~~~~E----~~nQlaiQ~AvlisrIARlDyPr----eWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ 149 (978)
T KOG1993|consen 78 EKDFIRCNLLLHSDE----ENNQLAIQNAVLISRIARLDYPR----EWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHH 149 (978)
T ss_pred HHHHHHHHHHHhccc----chhHHHHHHHHHHHHHHhcCCCc----cchhHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 999999988776432 35677888889999999988775 8999999999988854 344455566777788
Q ss_pred HHhhhCCCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHH
Q 001132 180 LVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWA 218 (1147)
Q Consensus 180 lv~E~s~~~ss~~~~~~~~h~k~~~sF~~~~L~~if~~~ 218 (1147)
++-++++.| =.+++..|.+. -+.|+.+.
T Consensus 150 ilK~Lat~R----------L~a~rk~F~el-~~~I~~~l 177 (978)
T KOG1993|consen 150 ILKALATKR----------LLADRKAFYEL-APEILTIL 177 (978)
T ss_pred HHHHHHHhH----------HhhhhHHHHHH-hHHHHHHH
Confidence 888887651 12577778775 45666633
No 17
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.35 Score=58.40 Aligned_cols=139 Identities=16% Similarity=0.223 Sum_probs=112.0
Q ss_pred HhhCCCC-HHHHHHHHHhhhcCCCcHHHHHHHHhcC-CchhHHHHHHHHHHHHHhcccCC-----CCHHHHHHHHHHHHH
Q 001132 41 SIQMHVN-PAAAEATILGLCQSPQPYKACQFILENS-QVANARFQAAAAIRDAAMREWSF-----LTADEKKSLIGFCLC 113 (1147)
Q Consensus 41 ~l~~~~~-r~~Ae~~L~~f~~~~~~~~~~~~iL~~S-~~~~~~f~a~~~L~~~i~~~W~~-----l~~~~~~~lr~~ll~ 113 (1147)
++-+.++ |..||+.|.++.+.|.-...|-+|+..- -...++.-|+--++++|+|.|+. ++++++.+.|.|+.+
T Consensus 12 Tldada~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~Dek~e~K~~lie 91 (970)
T COG5656 12 TLDADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADEKSEAKKYLIE 91 (970)
T ss_pred HhccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCcccHHHHHHHHH
Confidence 4444333 8999999999999999999999988665 44699999999999999999986 556799999999999
Q ss_pred HHHhccCCCchhHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhccCCChhhHHHHHHHHHHHHhhh
Q 001132 114 FVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEF 184 (1147)
Q Consensus 114 ~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~l~iL~~lv~E~ 184 (1147)
-+......-+...|..+...+..|.--+|+.+ -|+ +++...+++.+ +...+...||..+.++-.-+
T Consensus 92 nil~v~l~sp~~tr~~l~ail~~I~seD~ps~---~wg-l~p~~~nll~s-~ea~~vy~gLlcl~elfkay 157 (970)
T COG5656 92 NILDVFLYSPEVTRTALNAILVNIFSEDKPSD---LWG-LFPKAANLLRS-SEANHVYTGLLCLEELFKAY 157 (970)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHhccccCchh---hcc-cchHHHHhhcc-cchhHHHHHHHHHHHHHHHH
Confidence 88877655577788888888999999999842 576 88888888875 34567788988887765433
No 18
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.034 Score=67.41 Aligned_cols=163 Identities=12% Similarity=0.132 Sum_probs=122.2
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHhcCC-chhHHHHHHHHHHHHHhcccC-------CCCHHHHHHHHHHHHHHHHhcc
Q 001132 48 PAAAEATILGLCQSPQPYKACQFILENSQ-VANARFQAAAAIRDAAMREWS-------FLTADEKKSLIGFCLCFVMQHA 119 (1147)
Q Consensus 48 r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~-~~~~~f~a~~~L~~~i~~~W~-------~l~~~~~~~lr~~ll~~l~~~~ 119 (1147)
|+-||+.|.+..-++..--..-.++.+++ .+..+.-|+..+++.++|+|. .+..++|+.||.-++....+.
T Consensus 22 rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s- 100 (960)
T KOG1992|consen 22 RKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSS- 100 (960)
T ss_pred CchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcC-
Confidence 79999999999988777666777888887 569999999999999999994 467789999999999976554
Q ss_pred CCCchhHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhccCCChhhHHHHHHHHHH-HHhhhCCC-CCCCCCCCHH
Q 001132 120 SSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLES-LVSEFSPS-TSSAMGLPRE 197 (1147)
Q Consensus 120 ~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~l~iL~~-lv~E~s~~-~ss~~~~~~~ 197 (1147)
+.-+..++..++..|.|+++|+ .|++.++++++.+.+ ++- +...|.--..+ +---|..- || ---|.
T Consensus 101 ---~~~iQ~qlseal~~Ig~~DFP~----kWptLl~dL~~~ls~-~D~-~~~~gVL~tahsiFkr~R~efrS---daL~~ 168 (960)
T KOG1992|consen 101 ---PFNIQKQLSEALSLIGKRDFPD----KWPTLLPDLVARLSS-GDF-NVINGVLVTAHSIFKRYRPEFRS---DALWL 168 (960)
T ss_pred ---cHHHHHHHHHHHHHHhccccch----hhHHHHHHHHhhccc-cch-HHHHHHHHHHHHHHHhcCccccc---HHHHH
Confidence 5778999999999999999998 799999999999874 232 23334333333 43344332 33 22355
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 001132 198 FHEQCRISLELDYLKTFYCWARDAALS 224 (1147)
Q Consensus 198 ~h~k~~~sF~~~~L~~if~~~~~~L~~ 224 (1147)
.-++|--.|..- |..+|+...+..+.
T Consensus 169 EIK~vLd~f~~P-lt~Lf~~t~~l~~~ 194 (960)
T KOG1992|consen 169 EIKLVLDRFAEP-LTDLFRKTMELIQR 194 (960)
T ss_pred HHHHHHHhhHhH-HHHHHHHHHHHHhh
Confidence 666777777654 77888777665543
No 19
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=96.81 E-value=0.07 Score=65.72 Aligned_cols=145 Identities=9% Similarity=0.100 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHhhhcCCCcHHHHHHHHhcCCch-hHHHHHHHHHHHHHhcccCC-----CCHHHH
Q 001132 31 IMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENSQVA-NARFQAAAAIRDAAMREWSF-----LTADEK 104 (1147)
Q Consensus 31 ~~~~le~~~~~l~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~-~~~f~a~~~L~~~i~~~W~~-----l~~~~~ 104 (1147)
++.+++.+- -..|+.++.||+.|.++.+.++---+...|--..+++ ..+.-|+--+++.|.++|.. +.++++
T Consensus 6 vv~~~~~aq--s~~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~ 83 (947)
T COG5657 6 VVKQLDLAQ--SPDPPSVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSILPDEN 83 (947)
T ss_pred HHHHHHhhc--CCCCchHhhHHHHHHhhhccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCCCccc
Confidence 344555541 1123348999999999999999666666666555454 88999999999999999964 777888
Q ss_pred HHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhccCCChhhHHHHHHHHHHHHhhh
Q 001132 105 KSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEF 184 (1147)
Q Consensus 105 ~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~l~iL~~lv~E~ 184 (1147)
.-||.-++..+.+.. ....-+...++++|+...+|+ +|++.++++...++. ++.....-.+..+.+++.++
T Consensus 84 v~IR~~l~~lii~s~----n~l~iq~a~avs~IA~~DfPd----eWpTL~~DL~~~Ls~-~D~~tn~~~L~~~h~Ifk~~ 154 (947)
T COG5657 84 VLIRDELFSLIISSS----NQLQIQNALAVSRIARLDFPD----EWPTLVPDLLSLLSE-KDMVTNENSLRVLHHIFKRL 154 (947)
T ss_pred hHHHHHHHHHHHccc----chHHHHHHHHHHHHHhccCcc----cchhHHHHHHhhhcc-cchHHHHHHHHHHHHHHHHH
Confidence 899999999988763 233338889999999999998 899999999999874 34444555666666666666
Q ss_pred CC
Q 001132 185 SP 186 (1147)
Q Consensus 185 s~ 186 (1147)
..
T Consensus 155 r~ 156 (947)
T COG5657 155 RR 156 (947)
T ss_pred hh
Confidence 53
No 20
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=94.95 E-value=11 Score=44.84 Aligned_cols=108 Identities=15% Similarity=0.166 Sum_probs=82.9
Q ss_pred HHHHHHHHHhhhcCCCc--HH-HHHHHHhcCCchhHHHHHHHHHHHHHh-----------cccCCCCHHHHHHHHHHHHH
Q 001132 48 PAAAEATILGLCQSPQP--YK-ACQFILENSQVANARFQAAAAIRDAAM-----------REWSFLTADEKKSLIGFCLC 113 (1147)
Q Consensus 48 r~~Ae~~L~~f~~~~~~--~~-~~~~iL~~S~~~~~~f~a~~~L~~~i~-----------~~W~~l~~~~~~~lr~~ll~ 113 (1147)
|..||+.|+++++..-. .. .++.+-+.-+++|.++.|.-+|++.+. .+|-.++++.|.++|...+.
T Consensus 22 rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~ 101 (858)
T COG5215 22 RLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALR 101 (858)
T ss_pred cccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence 78999999999864322 12 223344666789999999999988765 67988999999999888887
Q ss_pred HHHhccCCCchhHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhc
Q 001132 114 FVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVL 162 (1147)
Q Consensus 114 ~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~~~~~~i~~~~~ 162 (1147)
-+.+ ..+-.-+...+++|.|...+-+.. .|+.++.+++..+.
T Consensus 102 aL~s----~epr~~~~Aaql~aaIA~~Elp~~---~wp~lm~~mv~nvg 143 (858)
T COG5215 102 ALKS----PEPRFCTMAAQLLAAIARMELPNS---LWPGLMEEMVRNVG 143 (858)
T ss_pred HhcC----CccHHHHHHHHHHHHHHHhhCccc---cchHHHHHHHHhcc
Confidence 6532 345566778899999999888863 68889999888775
No 21
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=91.50 E-value=49 Score=41.93 Aligned_cols=128 Identities=11% Similarity=0.084 Sum_probs=96.1
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHH-hcCCchhHHHHHHHHHHHHHhcccCCC----------CHHHHHHHHHHHHHHHH
Q 001132 48 PAAAEATILGLCQSPQPYKACQFIL-ENSQVANARFQAAAAIRDAAMREWSFL----------TADEKKSLIGFCLCFVM 116 (1147)
Q Consensus 48 r~~Ae~~L~~f~~~~~~~~~~~~iL-~~S~~~~~~f~a~~~L~~~i~~~W~~l----------~~~~~~~lr~~ll~~l~ 116 (1147)
|.+||..|.++...+.--...-.+. ..-.+-..+-+|+-.|++.|..+|... +.+.|.-||+-+++.+.
T Consensus 21 r~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~~~e~~K~~IRe~Ll~~l~ 100 (1005)
T KOG2274|consen 21 RSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLIVSEEVKALIREQLLNLLD 100 (1005)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCcccHHHHHHHHHHHHhhhh
Confidence 8999999999988777444444444 443445677788899999999999753 34566777777777665
Q ss_pred hccCCCchhHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhccCCChhhHHHHHHHHHHHHhhh
Q 001132 117 QHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEF 184 (1147)
Q Consensus 117 ~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~l~iL~~lv~E~ 184 (1147)
+..+.+++....++..|..-.||| +|+..+.-+.+.+.. ++.++.--+++.|.++..|.
T Consensus 101 ----~sn~ki~~~vay~is~Ia~~D~Pd----~WpElv~~i~~~l~~-~n~n~i~~am~vL~el~~ev 159 (1005)
T KOG2274|consen 101 ----DSNSKIRSAVAYAISSIAAVDYPD----EWPELVPFILKLLSS-GNENSIHGAMRVLAELSDEV 159 (1005)
T ss_pred ----ccccccchHHHHHHHHHHhccCch----hhHHHHHHHHHHHhc-cchhhhhhHHHHHHHHHHHH
Confidence 346889999999999999999999 898888888888874 46666656666666665554
No 22
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.83 E-value=1.1e+02 Score=39.87 Aligned_cols=63 Identities=17% Similarity=0.145 Sum_probs=53.0
Q ss_pred hhhHHhHHHHHHHHHhhchhhhhcCCHHHHHHHHHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhh
Q 001132 953 PKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKET 1019 (1147)
Q Consensus 953 Pkl~~~yf~Ll~~l~e~~~~~l~~L~~~~f~~ll~sl~~Gl~~~~~~I~~~~l~~l~~l~~~~~~~~ 1019 (1147)
+|.+++-..-|..+.|-|++.+.. .+-.++..+.-||+..++.|--.+|.+|..+.+.+-...
T Consensus 362 w~~R~AaL~Als~i~EGc~~~m~~----~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~i 424 (1075)
T KOG2171|consen 362 WKERHAALLALSVIAEGCSDVMIG----NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEI 424 (1075)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHH----HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHH
Confidence 667777777788899999888753 578899999999999999999999999999998765443
No 23
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=73.18 E-value=2.7e+02 Score=35.91 Aligned_cols=162 Identities=11% Similarity=0.061 Sum_probs=89.4
Q ss_pred chhHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhccCCCCCchhhHHHH
Q 001132 77 VANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQ 156 (1147)
Q Consensus 77 ~~~~~f~a~~~L~~~i~~~W~~l~~~~~~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~~~~~~ 156 (1147)
..-++..++-+|...+.|.-..+|. .-..+-.+++.-+.. .-..||.+.+.+++.+.-.+-- ..+.+
T Consensus 146 ~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s----~R~aVrKkai~~l~~la~~~~~--------~ly~~ 212 (1233)
T KOG1824|consen 146 VSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQS----PRLAVRKKAITALGHLASSCNR--------DLYVE 212 (1233)
T ss_pred chhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccC----hHHHHHHHHHHHHHHHHHhcCH--------HHHHH
Confidence 3457777888888888888777776 445555555443321 2356899999888888754432 24444
Q ss_pred HHHHhccC----CChhhHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhh---hhhhHHHHHHHHHHHHHHHHHh
Q 001132 157 VHQAVLGI----HGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLE---LDYLKTFYCWARDAALSVTKQI 229 (1147)
Q Consensus 157 i~~~~~~~----~s~~~~~~~l~iL~~lv~E~s~~~ss~~~~~~~~h~k~~~sF~---~~~L~~if~~~~~~L~~~~~~~ 229 (1147)
+++-+-.. .++.......+.|+++.-.-+.-..+..+.. --.-..|. +..=...=+.|++.++.+..++
T Consensus 213 li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~i----vp~v~~y~~~~e~~dDELrE~~lQale~fl~rc 288 (1233)
T KOG1824|consen 213 LIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKI----VPLVADYCNKIEEDDDELREYCLQALESFLRRC 288 (1233)
T ss_pred HHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchh----hHHHHHHhcccccCcHHHHHHHHHHHHHHHHhC
Confidence 44433221 1222334445555555433322211112211 11222333 1122334456778888877664
Q ss_pred hccchhhhHHHHHHHHHHHHHHHcccccccC
Q 001132 230 IESDAAASEVKACTAALRLLHQILNWDFQFD 260 (1147)
Q Consensus 230 ~~~~~~~~~~~l~~~~L~l~~~~LswdF~~~ 260 (1147)
+.. -...+...++++...++||+.-.
T Consensus 289 p~e-----i~p~~pei~~l~l~yisYDPNy~ 314 (1233)
T KOG1824|consen 289 PKE-----ILPHVPEIINLCLSYISYDPNYN 314 (1233)
T ss_pred hhh-----hcccchHHHHHHHHHhccCCCCC
Confidence 321 23456789999999999998544
No 24
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=63.78 E-value=3.6 Score=19.59 Aligned_cols=7 Identities=43% Similarity=0.587 Sum_probs=4.8
Q ss_pred CCCCCCC
Q 001132 10 GGGGDDG 16 (1147)
Q Consensus 10 ~~~~~~~ 16 (1147)
-||||+|
T Consensus 2 hgG~Wgq 8 (8)
T PF03991_consen 2 HGGGWGQ 8 (8)
T ss_pred CCCcCCC
Confidence 3788865
No 25
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=46.82 E-value=2.7e+02 Score=29.73 Aligned_cols=109 Identities=19% Similarity=0.126 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHhhcC
Q 001132 982 FAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDY 1061 (1147)
Q Consensus 982 f~~ll~sl~~Gl~~~~~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~il~~~~ 1061 (1147)
+..++..+...++..-+.|+..+|.++..++..+-+.. ......++..++..+ .+-
T Consensus 51 l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~----------------------~~~~~~~l~~Ll~~~--~~~ 106 (228)
T PF12348_consen 51 LRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHF----------------------EPYADILLPPLLKKL--GDS 106 (228)
T ss_dssp HH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGG----------------------HHHHHHHHHHHHHGG--G--
T ss_pred HHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhH----------------------HHHHHHHHHHHHHHH--ccc
Confidence 33444677788888889999999999999987763321 123444455555522 333
Q ss_pred CCchHHHHhhhhHHHHhCCH--HHH-HHHHHHHHHcCCCchHHHHHHHHHHHhhcCC
Q 001132 1062 SPDMVGTAADALFPLILCEP--RLY-QRLGSELIERQANPPFKSRLANALQSLTSSN 1115 (1147)
Q Consensus 1062 ~~~~~~~~s~~Ll~LI~~~~--~~f-~~l~~~li~~q~~~~~~~~l~~aF~~L~~~~ 1115 (1147)
+.....++..+|..++...+ ... .......+.+ .+|..|....+++...+...
T Consensus 107 ~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~-Kn~~vR~~~~~~l~~~l~~~ 162 (228)
T PF12348_consen 107 KKFIREAANNALDAIIESCSYSPKILLEILSQGLKS-KNPQVREECAEWLAIILEKW 162 (228)
T ss_dssp -HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHTT-
T ss_pred cHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHc
Confidence 33455677778888886555 222 3333333333 35778888888888887653
No 26
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=43.28 E-value=3.1e+02 Score=30.71 Aligned_cols=172 Identities=10% Similarity=0.052 Sum_probs=97.2
Q ss_pred HHHhhccCCCCCchhhHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhhhhHHHHH
Q 001132 137 LMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYC 216 (1147)
Q Consensus 137 i~K~~W~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~l~iL~~lv~E~s~~~ss~~~~~~~~h~k~~~sF~~~~L~~if~ 216 (1147)
-+++.|.+ +.|+-++.-+...+-. .++.....||.+|..+++...... -..+++++|.++|+
T Consensus 107 ~~~~~~i~---~~~~liiP~iL~llDD-~~~~~K~~G~~lL~~ll~~~~~~~--------------~~~L~~tGl~~v~~ 168 (282)
T PF10521_consen 107 QLDRPWIS---QHWPLIIPPILNLLDD-YSPEIKIQGCQLLHHLLEKVPAAE--------------WDILRRTGLFSVFE 168 (282)
T ss_pred cCCcchHH---HhhhHHHhhHHHHhcC-CCHHHHHHHHHHHHHHHHhCChhh--------------hHHHHHcChHHHHH
Confidence 45566654 2566677777777753 367888999999999998876651 34577778888888
Q ss_pred HHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcccccccCCCCCcccccccccccccccCCCCccccccccCCccc
Q 001132 217 WARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAW 296 (1147)
Q Consensus 217 ~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~W 296 (1147)
-++. ....-.+...+..+...++..+..++..++.=.+.... ..
T Consensus 169 ~al~---~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~---------------------------------~~ 212 (282)
T PF10521_consen 169 DALF---PCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDS---------------------------------NP 212 (282)
T ss_pred HHHH---HHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCc---------------------------------cc
Confidence 6543 33332222222233456777777777776532221110 01
Q ss_pred HHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhhHHHHHHHHHHhhcccCccCCCChhhHHHHHHHHHHhhhhhcCCh
Q 001132 297 CDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPP 376 (1147)
Q Consensus 297 ~~~l~~~~~~~llf~ly~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl~~~~f~~~~~~~r~~yl~~~l~~i~~il~~~ 376 (1147)
|....+.-+-+.++.-+..... ...+.+....++-|..+...-|- .-.+|+++++-.+.+++.+|
T Consensus 213 r~~~l~~~l~e~IL~~~~~~~~-------~~~~~l~~~ll~~l~~~i~~lGi--------~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 213 RSTWLDKILREGILSSMEHESS-------FSYPRLRTVLLQQLPPIIDELGI--------SSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred chHHHHHHHHHHHhhhceeccc-------cCchhHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHHhcCC
Confidence 1111222222323332222111 01255677776666665543331 24779999999888888765
Q ss_pred h
Q 001132 377 D 377 (1147)
Q Consensus 377 ~ 377 (1147)
.
T Consensus 278 f 278 (282)
T PF10521_consen 278 F 278 (282)
T ss_pred C
Confidence 4
No 27
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=41.69 E-value=7.4e+02 Score=30.32 Aligned_cols=206 Identities=21% Similarity=0.297 Sum_probs=123.3
Q ss_pred HHHhccchHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHhhcCccceeEccCCchhhhhhchhhHhhhhhee
Q 001132 861 LEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKVDFSSDSIEAQAINISQVVFFGLHI 940 (1147)
Q Consensus 861 l~~y~~~~~vv~~iLkl~~e~v~n~~~~l~~~~~~~l~~~~~~li~~y~~~~~g~~~l~~d~~~~~~l~~~~vv~~~l~~ 940 (1147)
.++.+.+|+.-..+-.|+..+..++ +-.++-++.+.++.++..|.|- +|+ +.+++. .
T Consensus 252 ~~ll~~n~q~~~q~rpfL~~wls~k--------~emV~lE~Ar~v~~~~~~nv~~-~~~-----~~~vs~-----L---- 308 (898)
T COG5240 252 VELLKENSQALLQLRPFLNSWLSDK--------FEMVFLEAARAVCALSEENVGS-QFV-----DQTVSS-----L---- 308 (898)
T ss_pred HHHHHhChHHHHHHHHHHHHHhcCc--------chhhhHHHHHHHHHHHHhccCH-HHH-----HHHHHH-----H----
Confidence 3455678888888888888887765 4567778888898888777541 111 111111 1
Q ss_pred eecccccccccchhhHH--hHHHHHHHHHhhchhhhhcCCHHHHHHHHHHHHhhccccCHHHHHHHHHHHHHHHHHHHhh
Q 001132 941 VTPLMSGDLLKYPKLCH--DYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKE 1018 (1147)
Q Consensus 941 ~ipli~~dll~yPkl~~--~yf~Ll~~l~e~~~~~l~~L~~~~f~~ll~sl~~Gl~~~~~~I~~~~l~~l~~l~~~~~~~ 1018 (1147)
.-|++-|.... +....|..+...+|+++..-.++. ++ -++..+..|++.+..+| +
T Consensus 309 ------~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~ev-----Es---LIsd~Nr~IstyAITtL---L------ 365 (898)
T COG5240 309 ------RTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEV-----ES---LISDENRTISTYAITTL---L------ 365 (898)
T ss_pred ------HHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhH-----HH---HhhcccccchHHHHHHH---H------
Confidence 22333344333 345567777888999874333331 12 23445667776664443 2
Q ss_pred hcCCCccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHhhcCCCchHHHHhhhhHHHHhCCHHHHHHHHHHHHHcC---
Q 001132 1019 TGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQ--- 1095 (1147)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~il~~~~~~~~~~~~s~~Ll~LI~~~~~~f~~l~~~li~~q--- 1095 (1147)
+.|. .+.+.++++.+-+++ .|.+-+.---+-+++-+|-+..|.....+..-|.+.-
T Consensus 366 -KTGt------------------~e~idrLv~~I~sfv--hD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~e 424 (898)
T COG5240 366 -KTGT------------------EETIDRLVNLIPSFV--HDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQE 424 (898)
T ss_pred -HcCc------------------hhhHHHHHHHHHHHH--HhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhc
Confidence 2232 244666666666644 3443332224678888999888887766666554442
Q ss_pred CCchHHHHHHHHHHHhhcCCCCCCCcChhhHHHHHHHHHHHHHHh
Q 001132 1096 ANPPFKSRLANALQSLTSSNQLSSTLDRVNYQRFRKNLTNFLVEV 1140 (1147)
Q Consensus 1096 ~~~~~~~~l~~aF~~L~~~~~~~~~l~~~nr~~F~~nl~~F~~~v 1140 (1147)
..-+-+.....|....|.. ++..|+|=-++|..|.-++
T Consensus 425 Gg~eFK~~~Vdaisd~~~~-------~p~skEraLe~LC~fIEDc 462 (898)
T COG5240 425 GGLEFKKYMVDAISDAMEN-------DPDSKERALEVLCTFIEDC 462 (898)
T ss_pred ccchHHHHHHHHHHHHHhh-------CchHHHHHHHHHHHHHhhc
Confidence 2234456666666666653 4688899999999998765
No 28
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=41.07 E-value=1.6e+02 Score=30.14 Aligned_cols=117 Identities=24% Similarity=0.298 Sum_probs=70.0
Q ss_pred hhhHHhHHHHHHHHHhhc-hhhhhcCCHHHHHHHHHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhh
Q 001132 953 PKLCHDYFSLLSHLLEVY-PETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAA 1031 (1147)
Q Consensus 953 Pkl~~~yf~Ll~~l~e~~-~~~l~~L~~~~f~~ll~sl~~Gl~~~~~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~ 1031 (1147)
|+-+-.=-.|+..+++.+ ++.+.+--..-+..++.-|+. .....+...|+.++..+..+.. +.+.+.....
T Consensus 39 ~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~---~~~~~~~~~ai~~L~~l~~~~~-----~~p~l~Rei~ 110 (165)
T PF08167_consen 39 AYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK---PDPPSVLEAAIITLTRLFDLIR-----GKPTLTREIA 110 (165)
T ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHhc-----CCCchHHHHh
Confidence 444555556777777777 444433333334444444443 4446677888888888887653 2222221111
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHHhhcCCCchHHHHhhhhHHHHhCCHHHHHHHHHHH
Q 001132 1032 GINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSEL 1091 (1147)
Q Consensus 1032 ~~~~~~~~~~~~~l~~~l~~ll~~il~~~~~~~~~~~~s~~Ll~LI~~~~~~f~~l~~~l 1091 (1147)
...++.++..+++.+ ++ ......+-+.|..||..+|..|..+..++
T Consensus 111 ----------tp~l~~~i~~ll~l~--~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki 156 (165)
T PF08167_consen 111 ----------TPNLPKFIQSLLQLL--QD--SSCPETALDALATLLPHHPTTFRPFANKI 156 (165)
T ss_pred ----------hccHHHHHHHHHHHH--hc--cccHHHHHHHHHHHHHHCCccccchHHHH
Confidence 123666777777744 32 34456788999999999998777666654
No 29
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=36.88 E-value=98 Score=31.78 Aligned_cols=56 Identities=21% Similarity=0.355 Sum_probs=45.3
Q ss_pred hhhHHhHHHHHHHHHhhchhhhhcCCHHHHHHHHHHHHhhccccCHHHHHHHHHHHHHHHHHH
Q 001132 953 PKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYH 1015 (1147)
Q Consensus 953 Pkl~~~yf~Ll~~l~e~~~~~l~~L~~~~f~~ll~sl~~Gl~~~~~~I~~~~l~~l~~l~~~~ 1015 (1147)
=++|+..|.++..+.+.++..+ + +..++..+..||+- +.+|-..|+..+..++...
T Consensus 41 LelRK~ayE~lytlLd~~~~~~---~---~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~ 96 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRI---D---ISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLA 96 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS-------HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHHhC---C---HHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhC
Confidence 3689999999999999777654 2 56679999999988 9999999999999887644
No 30
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=36.57 E-value=81 Score=25.23 Aligned_cols=55 Identities=24% Similarity=0.219 Sum_probs=41.8
Q ss_pred hhhHHhHHHHHHHHHhhchhhhhcCCHHHHHHHHHHHHhhccccCHHHHHHHHHHHHHH
Q 001132 953 PKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRAL 1011 (1147)
Q Consensus 953 Pkl~~~yf~Ll~~l~e~~~~~l~~L~~~~f~~ll~sl~~Gl~~~~~~I~~~~l~~l~~l 1011 (1147)
|.++.+-...|..+.+.+++.+. +....++..+...|+..+.+|-..++.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~----~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQ----PYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHH----HHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 55666666677777776666543 46778888899999988899999999888754
No 31
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=34.42 E-value=1.6e+02 Score=25.86 Aligned_cols=82 Identities=16% Similarity=0.103 Sum_probs=50.2
Q ss_pred HHHHhhCCCC---HHHHHHHHHhhhcCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHH
Q 001132 38 ACSSIQMHVN---PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCF 114 (1147)
Q Consensus 38 ~~~~l~~~~~---r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~~~~lr~~ll~~ 114 (1147)
+.+.+...++ |..|-..|.++. +++..+....+| ++.++.++..|+.+|... +. .+....+.+.
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i--------~~---~~~~~~L~~~ 70 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGELG-DPEAIPALIELL-KDEDPMVRRAAARALGRI--------GD---PEAIPALIKL 70 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCCT-HHHHHHHHHHHH-TSSSHHHHHHHHHHHHCC--------HH---HHTHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHH-cCCCHHHHHHHHHHHHHh--------CC---HHHHHHHHHH
Confidence 3344434455 566777776654 577888888888 678889999999988754 11 2233444443
Q ss_pred HHhccCCCchhHHHHHHHHHH
Q 001132 115 VMQHASSPEGYVQAKISSVAA 135 (1147)
Q Consensus 115 l~~~~~~~~~~v~~~l~~~la 135 (1147)
+.+ +....|+......++
T Consensus 71 l~~---~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 71 LQD---DDDEVVREAAAEALG 88 (88)
T ss_dssp HTC----SSHHHHHHHHHHHH
T ss_pred HcC---CCcHHHHHHHHhhcC
Confidence 322 135667777766553
No 32
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.53 E-value=1.1e+03 Score=30.08 Aligned_cols=193 Identities=13% Similarity=0.064 Sum_probs=100.1
Q ss_pred HHHHHHHHHhhCC---CCHHHHHHHHHhhhcC------CCcHHHHHHHHhcCC-chhHHHHHHHHHHHHHhcccCCCCH-
Q 001132 33 HSIEIACSSIQMH---VNPAAAEATILGLCQS------PQPYKACQFILENSQ-VANARFQAAAAIRDAAMREWSFLTA- 101 (1147)
Q Consensus 33 ~~le~~~~~l~~~---~~r~~Ae~~L~~f~~~------~~~~~~~~~iL~~S~-~~~~~f~a~~~L~~~i~~~W~~l~~- 101 (1147)
+.++.+|...+++ .||+.|-.-|..|.+. .+.....-..|++-. ++...=+|+-++-..+.++-...-.
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~d 101 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMD 101 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcc
Confidence 4456666666664 3688888888777652 344555556666554 4577777888887777776311100
Q ss_pred H--HHHHHH--------------HHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhccCCCC--CchhhHHHHHHHHhcc
Q 001132 102 D--EKKSLI--------------GFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTS--SDKEAFFSQVHQAVLG 163 (1147)
Q Consensus 102 ~--~~~~lr--------------~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~--~~~~~~~~~i~~~~~~ 163 (1147)
+ +-.++- +-|++|+-.. .-+||--.++++..+++.-=.+.-. -.-|.=+..++..+..
T Consensus 102 ds~qsdd~g~~iae~fik~qd~I~lll~~~e~~----DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 102 DSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF----DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred cchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh----chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 1 112222 2333433222 4567777788887777532211000 0001222333333331
Q ss_pred CCC-hhhHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHH
Q 001132 164 IHG-VDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKAC 242 (1147)
Q Consensus 164 ~~s-~~~~~~~l~iL~~lv~E~s~~~ss~~~~~~~~h~k~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~ 242 (1147)
+ +.-+--++-+|.+++-+-+. ..--..|++- +.+.|.+ ++.= ++ ....-++
T Consensus 178 --srE~IRNe~iLlL~eL~k~n~~-------------IQKlVAFENa-FerLfsI----IeeE------Gg--~dGgIVv 229 (970)
T KOG0946|consen 178 --SREPIRNEAILLLSELVKDNSS-------------IQKLVAFENA-FERLFSI----IEEE------GG--LDGGIVV 229 (970)
T ss_pred --hhhhhchhHHHHHHHHHccCch-------------HHHHHHHHHH-HHHHHHH----HHhc------CC--CCCcchH
Confidence 2 12223456677777644332 2334567764 5555543 2221 11 1233577
Q ss_pred HHHHHHHHHHccccc
Q 001132 243 TAALRLLHQILNWDF 257 (1147)
Q Consensus 243 ~~~L~l~~~~LswdF 257 (1147)
.-+|.++.++|..+-
T Consensus 230 eDCL~ll~NLLK~N~ 244 (970)
T KOG0946|consen 230 EDCLILLNNLLKNNI 244 (970)
T ss_pred HHHHHHHHHHHhhCc
Confidence 899999999996653
No 33
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=31.91 E-value=2e+02 Score=26.53 Aligned_cols=107 Identities=13% Similarity=-0.005 Sum_probs=59.3
Q ss_pred cHHHHHHHHhcCCchhHHHHHHHHHHHHHhcccCCCCHHHHHHH-----HHHHHHHHHhccCCCchhHHHHHHHHHHHHH
Q 001132 64 PYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSL-----IGFCLCFVMQHASSPEGYVQAKISSVAAQLM 138 (1147)
Q Consensus 64 ~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~~~~l-----r~~ll~~l~~~~~~~~~~v~~~l~~~la~i~ 138 (1147)
..+....+|... +++++..|+.+|.+..... ++.+..+ -..+++++.. ...-|+...+.++..+.
T Consensus 8 ~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~-----~~~~~~~~~~~~i~~l~~~l~~----~~~~v~~~a~~~L~~l~ 77 (120)
T cd00020 8 GLPALVSLLSSS-DENVQREAAWALSNLSAGN-----NDNIQAVVEAGGLPALVQLLKS----EDEEVVKAALWALRNLA 77 (120)
T ss_pred ChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCC-----HHHHHHHHHCCChHHHHHHHhC----CCHHHHHHHHHHHHHHc
Confidence 455556666544 4789999999998887652 3333333 2344444322 25677788888888887
Q ss_pred HhhccCCCCCchhhHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 001132 139 KRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLV 181 (1147)
Q Consensus 139 K~~W~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~l~iL~~lv 181 (1147)
..+......-....++..+.+.+.. .+......++.+|..+.
T Consensus 78 ~~~~~~~~~~~~~g~l~~l~~~l~~-~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 78 AGPEDNKLIVLEAGGVPKLVNLLDS-SNEDIQKNATGALSNLA 119 (120)
T ss_pred cCcHHHHHHHHHCCChHHHHHHHhc-CCHHHHHHHHHHHHHhh
Confidence 5442110000011245555555543 24455566666666554
No 34
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=30.47 E-value=5.4e+02 Score=26.74 Aligned_cols=106 Identities=18% Similarity=0.128 Sum_probs=64.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHhhhcCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhcccCCC
Q 001132 21 GPADLAKLQSIMHSIEIACSSIQMHV-NPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFL 99 (1147)
Q Consensus 21 ~~~d~~~l~~~~~~le~~~~~l~~~~-~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l 99 (1147)
+..|..++ .++.++..++...+ +.++|.+.|.+..+.|..|+.-..++- .-.++..+--...-.|..+
T Consensus 60 ~~~nl~~l----~~v~~l~~~~~~~~~~~~ea~~~L~~I~~~~~~y~~~~~~l~-------~~l~~~~fa~lfgg~~~~~ 128 (193)
T PF06738_consen 60 RGVNLDKL----AAVNRLSRRIVAGQLSLEEAIERLDEIDREPPRYPPWLVILA-------AGLASAAFALLFGGSWIDM 128 (193)
T ss_pred CCcCHHHH----HHHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCCCHHHHHHH-------HHHHHHHHHHHHCCCHHHH
Confidence 45777788 66777777776543 579999999999999977666555442 1222223333344555544
Q ss_pred CHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHH
Q 001132 100 TADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLM 138 (1147)
Q Consensus 100 ~~~~~~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~ 138 (1147)
-..--.++--+++....++- ..++++.+-+...++.++
T Consensus 129 ~~a~i~g~~~~~~~~~~~r~-~~~~~~~~~~aa~~~~~~ 166 (193)
T PF06738_consen 129 IVAFILGLLVGLLRQLLSRR-RLNSFIQEFIAAFLASLL 166 (193)
T ss_pred HHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHH
Confidence 45555555555666555553 356666665554444433
No 35
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=28.64 E-value=80 Score=22.12 Aligned_cols=30 Identities=23% Similarity=0.186 Sum_probs=24.6
Q ss_pred HHHHHHhhccccCHHHHHHHHHHHHHHHHH
Q 001132 985 VLGTLDFGLHHQDSEIVDMCLRALRALASY 1014 (1147)
Q Consensus 985 ll~sl~~Gl~~~~~~I~~~~l~~l~~l~~~ 1014 (1147)
++..+..+++..+.+|-..++.++..++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 456677888999999999999999998864
No 36
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.82 E-value=1.5e+03 Score=29.74 Aligned_cols=91 Identities=12% Similarity=0.130 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhhcc-ccCHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCCCCchhHHHHHHHHHHHHHH
Q 001132 979 TEAFAHVLGTLDFGLH-HQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLL 1057 (1147)
Q Consensus 979 ~~~f~~ll~sl~~Gl~-~~~~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~il 1057 (1147)
+..+...+++...+|. +.+..|--.+.-+|..|++..-.+ . +.....+++++..+|.++
T Consensus 497 ~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~----~---------------e~~~~hvp~~mq~lL~L~- 556 (1010)
T KOG1991|consen 497 PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQA----D---------------EKVSAHVPPIMQELLKLS- 556 (1010)
T ss_pred hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhh----h---------------hhHhhhhhHHHHHHHHHH-
Confidence 4566666666666666 555555544544554444432110 0 111234666677777733
Q ss_pred hhcCCCchHHHHhhhhHHHHhCCHHHHHHHHHHHHH
Q 001132 1058 FEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIE 1093 (1147)
Q Consensus 1058 ~~~~~~~~~~~~s~~Ll~LI~~~~~~f~~l~~~li~ 1093 (1147)
.++.++ .++..+-.+|+-+.+.-+-++-++++
T Consensus 557 -ne~End---~Lt~vme~iV~~fseElsPfA~eL~q 588 (1010)
T KOG1991|consen 557 -NEVEND---DLTNVMEKIVCKFSEELSPFAVELCQ 588 (1010)
T ss_pred -Hhcchh---HHHHHHHHHHHHHHHhhchhHHHHHH
Confidence 677765 48999999999888777666666653
No 37
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=24.58 E-value=8.9e+02 Score=25.94 Aligned_cols=65 Identities=22% Similarity=0.174 Sum_probs=49.9
Q ss_pred HHhHHHHHHHHHhhchhhhhcCCHHHHHHHHHHHHhhc-----cccCHHHHHHHHHHHHHHHHHHHhhhc
Q 001132 956 CHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGL-----HHQDSEIVDMCLRALRALASYHYKETG 1020 (1147)
Q Consensus 956 ~~~yf~Ll~~l~e~~~~~l~~L~~~~f~~ll~sl~~Gl-----~~~~~~I~~~~l~~l~~l~~~~~~~~~ 1020 (1147)
-....+.++.+...+|..+.+...+....++..+..++ .....+|-..+|+.+..++.++.....
T Consensus 5 ~~~~l~~l~~ll~~~~~~~sq~~ie~~l~~~~~~~~~~~~~~~~~~~~~if~~~~~ll~~il~~hr~~l~ 74 (223)
T PF10441_consen 5 ILLILEILKQLLSSKPWLFSQYNIEQILSILSTLFSSLRNTLSADSSPSIFISLCRLLSSILRHHRFKLS 74 (223)
T ss_pred HHHHHHHHHHHHhcCchhccchhHHHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHhHHHHc
Confidence 34456677778888898888888888888888888775 233477888899999999988765553
No 38
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=24.19 E-value=1.1e+02 Score=28.44 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhccccCHHHHHHHHHHHHHHHHHH
Q 001132 980 EAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYH 1015 (1147)
Q Consensus 980 ~~f~~ll~sl~~Gl~~~~~~I~~~~l~~l~~l~~~~ 1015 (1147)
..+..++-.+.-||+|..++|-..++.+|+-++.++
T Consensus 7 p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~ 42 (102)
T PF12333_consen 7 PFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHA 42 (102)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHC
Confidence 456778888999999999999999999999999986
No 39
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=23.20 E-value=3.5e+02 Score=33.09 Aligned_cols=90 Identities=17% Similarity=0.215 Sum_probs=63.2
Q ss_pred cCCchhHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhccCCCCCchhh-
Q 001132 74 NSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEA- 152 (1147)
Q Consensus 74 ~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~~~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~~- 152 (1147)
+++|++++-.|+++|-... +++-...+-..+.+.+.. ..++||.+.+.++.++.+.. ++ .-+.
T Consensus 89 ~~~n~~~~~lAL~~l~~i~-------~~~~~~~l~~~v~~ll~~----~~~~VRk~A~~~l~~i~~~~-p~----~~~~~ 152 (526)
T PF01602_consen 89 NSPNPYIRGLALRTLSNIR-------TPEMAEPLIPDVIKLLSD----PSPYVRKKAALALLKIYRKD-PD----LVEDE 152 (526)
T ss_dssp CSSSHHHHHHHHHHHHHH--------SHHHHHHHHHHHHHHHHS----SSHHHHHHHHHHHHHHHHHC-HC----CHHGG
T ss_pred cCCCHHHHHHHHhhhhhhc-------ccchhhHHHHHHHHHhcC----CchHHHHHHHHHHHHHhccC-HH----HHHHH
Confidence 3578899999999998865 345555666666665432 35799999999999999873 33 1122
Q ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHH
Q 001132 153 FFSQVHQAVLGIHGVDTQFIGINFLESL 180 (1147)
Q Consensus 153 ~~~~i~~~~~~~~s~~~~~~~l~iL~~l 180 (1147)
+++.+.+.+.. .++.....++.++.++
T Consensus 153 ~~~~l~~lL~d-~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 153 LIPKLKQLLSD-KDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHHHTTH-SSHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccC-CcchhHHHHHHHHHHH
Confidence 67788888853 3566667777777776
No 40
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=22.64 E-value=1.4e+03 Score=27.56 Aligned_cols=230 Identities=16% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhhhcCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhcccCCCCHHHHH
Q 001132 26 AKLQSIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKK 105 (1147)
Q Consensus 26 ~~l~~~~~~le~~~~~l~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~~~ 105 (1147)
+.|..=++++++++..+..-+- ..++++ |..++.+++..+.+.++--|...|...|.++ ...-.
T Consensus 2 ~~l~~R~~a~~~l~~~i~~~~~-~~i~~i----------W~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~-----~~~~~ 65 (464)
T PF11864_consen 2 QPLSERIKAAEELCESIQKYPL-SSIEEI----------WYAAKDLIDPNQPSEARRAALELLIACIKRQ-----DSSSG 65 (464)
T ss_pred CCHHHHHHHHHHHHHHHHhCCc-hHHHHH----------HHHHhhhcCCCCCHHHHHHHHHHHHHHHHcc-----ccccH
Q ss_pred HHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhC
Q 001132 106 SLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFS 185 (1147)
Q Consensus 106 ~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~l~iL~~lv~E~s 185 (1147)
..|...++-+.... .+-.......++..+++.|= .-..|..++..++.. ++....+.-.
T Consensus 66 ~~R~~fF~~I~~~~---~~~d~~~~l~aL~~LT~~Gr------di~~~~~~i~~~L~~------------wl~~~~~~~~ 124 (464)
T PF11864_consen 66 LMRAEFFRDISDPS---NDDDFDLRLEALIALTDNGR------DIDFFEYEIGPFLLS------------WLEPSYQAAR 124 (464)
T ss_pred HHHHHHHHHHhcCC---CchhHHHHHHHHHHHHcCCc------CchhcccchHHHHHH------------HHHHHHHHHH
Q ss_pred CC-CCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHH------------HHHHHHHHHhhccchhhhHHHHHHHHHHHHHHH
Q 001132 186 PS-TSSAMGLPREFHEQCRISLELDYLKTFYCWAR------------DAALSVTKQIIESDAAASEVKACTAALRLLHQI 252 (1147)
Q Consensus 186 ~~-~ss~~~~~~~~h~k~~~sF~~~~L~~if~~~~------------~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~ 252 (1147)
.. +....+.............++..+.++|++.. ..+......+...-........++.+|+++..+
T Consensus 125 ~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldai 204 (464)
T PF11864_consen 125 SARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAI 204 (464)
T ss_pred HHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Q ss_pred cccccccCCCCCcccccccccccccccCCCCccccccccCCcccHHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhh
Q 001132 253 LNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIA 332 (1147)
Q Consensus 253 LswdF~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~~~llf~ly~~~~~~~~~~~~~~~~~l~ 332 (1147)
.+|...+...= +.++..|...|.. ..++
T Consensus 205 i~y~~iP~~sl---------------------------------------~~~i~vLCsi~~~-------------~~l~ 232 (464)
T PF11864_consen 205 ITYGDIPSESL---------------------------------------SPCIEVLCSIVNS-------------VSLC 232 (464)
T ss_pred HHcCcCChHHH---------------------------------------HHHHHHHhhHhcc-------------cccc
Q ss_pred HHHHHHHHHHhh
Q 001132 333 VSARKLIVQLCS 344 (1147)
Q Consensus 333 ~~~l~cL~qLas 344 (1147)
..+-+++.-|+.
T Consensus 233 ~~~w~~m~nL~~ 244 (464)
T PF11864_consen 233 KPSWRTMRNLLK 244 (464)
T ss_pred hhHHHHHHHHHc
No 41
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=22.02 E-value=2.9e+02 Score=27.23 Aligned_cols=95 Identities=14% Similarity=0.032 Sum_probs=49.3
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHhhhcCCCcHHHHHHHHh---cCCchhHHHHHHHHHHHHHhcccCCCCHHHHHHH----
Q 001132 35 IEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILE---NSQVANARFQAAAAIRDAAMREWSFLTADEKKSL---- 107 (1147)
Q Consensus 35 le~~~~~l~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~---~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~~~~l---- 107 (1147)
+++|+......+|-...-++-...+.++..-..+-..|. .+.++.+++.|+.+|..++.+. ++.-+.++
T Consensus 10 i~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNc----g~~f~~ev~~~~ 85 (140)
T PF00790_consen 10 IEKATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNC----GPRFHREVASKE 85 (140)
T ss_dssp HHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHS----HHHHHHHHTSHH
T ss_pred HHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcC----CHHHHHHHhHHH
Confidence 555554443333434444444444444444333333331 2388999999999999999885 23333332
Q ss_pred -HHHHHHHHHhccCCCchh--HHHHHHHHHH
Q 001132 108 -IGFCLCFVMQHASSPEGY--VQAKISSVAA 135 (1147)
Q Consensus 108 -r~~ll~~l~~~~~~~~~~--v~~~l~~~la 135 (1147)
-+.+...+.... .... |++++..++.
T Consensus 86 fl~~l~~l~~~~~--~~~~~~Vk~k~l~ll~ 114 (140)
T PF00790_consen 86 FLDELVKLIKSKK--TDPETPVKEKILELLQ 114 (140)
T ss_dssp HHHHHHHHHHHTT--THHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHccCC--CCchhHHHHHHHHHHH
Confidence 223333333332 2333 8888776543
No 42
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=20.82 E-value=1.2e+03 Score=26.22 Aligned_cols=83 Identities=16% Similarity=0.127 Sum_probs=45.8
Q ss_pred HHHhhhcCC--CcHHHHHHHHhcCCchhHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccCCCchhHHHHHH
Q 001132 54 TILGLCQSP--QPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKIS 131 (1147)
Q Consensus 54 ~L~~f~~~~--~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~~~~lr~~ll~~l~~~~~~~~~~v~~~l~ 131 (1147)
.+..+.+.+ .+|.....+|+++ +.|++.-|+..|...+...=..- .....++-.++++++.+.....+.-+..-.+
T Consensus 94 ~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~~~~~~~-~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av 171 (312)
T PF03224_consen 94 LFLELAKQDDSDPYSPFLKLLDRN-DSFIQLKAAFILTSLLSQGPKRS-EKLVKEALPKLLQWLSSQLSSSDSELQYIAV 171 (312)
T ss_dssp HHHHHHH-TTH--HHHHHHH-S-S-SHHHHHHHHHHHHHHHTSTTT---HHHHHHHHHHHHHHHH-TT-HHHH---HHHH
T ss_pred HHHHhcccccchhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHHHHHHhhcCCCcchHHHHH
Confidence 344444433 3788887767655 88999999999999988762111 1111355678888887643212233334555
Q ss_pred HHHHHHH
Q 001132 132 SVAAQLM 138 (1147)
Q Consensus 132 ~~la~i~ 138 (1147)
++++.++
T Consensus 172 ~~L~~LL 178 (312)
T PF03224_consen 172 QCLQNLL 178 (312)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666666
No 43
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=20.54 E-value=1.9e+03 Score=31.59 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=56.6
Q ss_pred cchhhHHhHHHHHHHHHhhchhhhhcCCHHHHHHHHHHHH-hhccccCHHHHHHHHHHHHHHHHHHHh
Q 001132 951 KYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLD-FGLHHQDSEIVDMCLRALRALASYHYK 1017 (1147)
Q Consensus 951 ~yPkl~~~yf~Ll~~l~e~~~~~l~~L~~~~f~~ll~sl~-~Gl~~~~~~I~~~~l~~l~~l~~~~~~ 1017 (1147)
.+|.+...-|..++.+++.|+..+..+|++.|..++.|+. ++-+..+.+|+-.+++.+-.++.++.+
T Consensus 1236 ~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~ 1303 (1780)
T PLN03076 1236 DHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAE 1303 (1780)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHh
Confidence 4689999999999999999988888888899999999985 775566788988888888877777754
No 44
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=20.42 E-value=2e+03 Score=30.26 Aligned_cols=152 Identities=19% Similarity=0.242 Sum_probs=99.9
Q ss_pred hhhHHhHHHHHHHHHhhchhhhhcCCHHHHHHHHHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhc
Q 001132 953 PKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAG 1032 (1147)
Q Consensus 953 Pkl~~~yf~Ll~~l~e~~~~~l~~L~~~~f~~ll~sl~~Gl~~~~~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~ 1032 (1147)
|++.+.+ +.+.+.+-....+.|..++..++++-..++.-.+.++...-.+.|..|.+.+ .+|+..|.
T Consensus 839 ~~l~~~~----~~~~~~~~s~~t~FPakql~~il~~~~~~~~~~~~~~~~~~~~pl~~l~~~y-------~~g~~~H~-- 905 (2196)
T KOG0368|consen 839 PNLDKSL----ESLVAKSASRITQFPAKQLAKILDAHLATLNRAEREVLFVNIQPLLKLVSRY-------SGGLEAHA-- 905 (2196)
T ss_pred hhHHHHH----HHHHHHHhhhcccCcHHHHHHHHHHHhhccccccchhhhhhhhHHHHHHHHh-------cccHHHHH--
Confidence 4444443 3333444444568999999999999999998888888888878877777655 23444442
Q ss_pred cCCCCCCCchhHHHHHHHHHHHH-HHhhcCCCchHHHHhhhhHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHh
Q 001132 1033 INNSNGNPEEGVLSRFLRSLLQL-LLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQANPPFKSRLANALQSL 1111 (1147)
Q Consensus 1033 ~~~~~~~~~~~~l~~~l~~ll~~-il~~~~~~~~~~~~s~~Ll~LI~~~~~~f~~l~~~li~~q~~~~~~~~l~~aF~~L 1111 (1147)
.+++.++|+.-++. =+|+..+. ...+.++.|=--+..-+...+..+++.+. -..+.+|.-+.-..
T Consensus 906 ---------~~v~~~Lle~Yl~VEk~F~~~~~----~~e~~i~~lr~~~~~d~~kVv~~i~SHs~-i~~KN~Lv~~ll~~ 971 (2196)
T KOG0368|consen 906 ---------KEVVHDLLEEYLEVEKLFNGRDS----HYEDVILRLREENKKDLKKVVDIILSHSQ-IKSKNKLVLALLDQ 971 (2196)
T ss_pred ---------HHHHHHHHHHHHHHHHHhccCcc----hHHHHHHHHHHhhhhHHHHHHHHHHcchh-hhhhhHHHHHHHHH
Confidence 35666777766664 34654443 35666666665566667888888887765 45556665555444
Q ss_pred hcCCCCCCCcChhhHHHHHHHHHHHH
Q 001132 1112 TSSNQLSSTLDRVNYQRFRKNLTNFL 1137 (1147)
Q Consensus 1112 ~~~~~~~~~l~~~nr~~F~~nl~~F~ 1137 (1147)
+.+ .+.++-+.|+++|.++.
T Consensus 972 l~~------~s~~~~~~f~~iL~~l~ 991 (2196)
T KOG0368|consen 972 LKP------PSSKVSDEFRDILRKLT 991 (2196)
T ss_pred hcC------CCCCCCHHHHHHHHHHH
Confidence 432 45677788888887774
Done!