Query 001132
Match_columns 1147
No_of_seqs 197 out of 524
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 12:40:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001132.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001132hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gjx_A Exportin-1; transport, 100.0 3.1E-59 1E-63 598.9 65.2 906 33-1143 28-1027(1073)
2 4hat_C Exportin-1; heat repeat 100.0 8E-54 2.7E-58 552.9 70.0 910 21-1143 11-1007(1023)
3 2x19_B Importin-13; nuclear tr 100.0 5.6E-43 1.9E-47 459.5 65.7 900 21-1144 16-955 (963)
4 3m1i_C Exportin-1; heat repeat 100.0 2.1E-40 7.4E-45 437.1 69.1 909 21-1143 11-1007(1049)
5 2x1g_F Cadmus; transport prote 100.0 9.5E-34 3.2E-38 371.9 68.3 914 33-1145 7-968 (971)
6 3ibv_A Exportin-T; karyopherin 100.0 3.4E-31 1.2E-35 342.2 72.8 914 21-1142 1-977 (980)
7 3a6p_A Exportin-5; exportin-5, 100.0 2E-24 6.9E-29 286.2 63.3 626 26-804 4-682 (1204)
8 4fdd_A Transportin-1; heat rep 99.8 1.6E-14 5.6E-19 186.6 61.1 151 23-186 7-161 (852)
9 1w9c_A CRM1 protein, exportin 99.7 2.1E-15 7.1E-20 165.3 18.9 157 854-1017 5-200 (321)
10 1wa5_C Importin alpha RE-expor 99.6 4.3E-09 1.5E-13 137.4 72.5 144 34-186 6-156 (960)
11 2bpt_A Importin beta-1 subunit 99.5 2.3E-08 7.9E-13 128.9 62.4 192 23-255 1-211 (861)
12 1qgr_A Protein (importin beta 99.1 4.3E-05 1.5E-09 98.4 64.1 183 36-255 4-204 (876)
13 1ibr_B P95, importin beta-1 su 98.5 1E-06 3.5E-11 104.4 17.0 184 35-255 3-204 (462)
14 1u6g_C TIP120 protein, CAND1; 78.4 24 0.00081 46.6 17.0 143 35-186 8-167 (1230)
15 4hxt_A De novo protein OR329; 69.8 53 0.0018 33.6 14.0 211 48-348 19-245 (252)
16 2bpt_A Importin beta-1 subunit 65.4 2.6E+02 0.0088 34.5 26.1 113 954-1092 613-725 (861)
17 3eiq_C Programmed cell death p 64.6 46 0.0016 37.1 12.4 111 29-144 214-329 (358)
18 2zu6_B Programmed cell death p 59.6 52 0.0018 35.8 11.5 111 29-144 163-278 (307)
19 4ffb_C Protein STU2; tubulin f 55.8 2E+02 0.0069 30.2 16.4 107 74-187 65-173 (278)
20 1xqr_A HSPBP1 protein; armadil 53.9 1.4E+02 0.0047 32.2 13.8 126 48-183 57-197 (296)
21 4db6_A Armadillo repeat protei 51.5 84 0.0029 31.2 11.1 109 62-182 11-125 (210)
22 4db8_A Armadillo-repeat protei 51.4 98 0.0034 31.7 12.0 113 62-181 53-166 (252)
23 3g2s_A C-terminal fragment of 50.1 1.6E+02 0.0055 28.2 11.9 97 34-134 15-121 (149)
24 4db6_A Armadillo repeat protei 46.5 1.3E+02 0.0043 29.8 11.5 108 63-182 54-167 (210)
25 4fdd_A Transportin-1; heat rep 44.5 5.4E+02 0.018 31.8 36.2 135 952-1114 683-821 (852)
26 1wiz_A DNA-binding protein SAT 40.4 12 0.0004 33.4 1.9 80 10-109 1-92 (101)
27 4hxt_A De novo protein OR329; 39.6 2.2E+02 0.0075 28.7 12.4 106 65-182 4-115 (252)
28 1x5b_A Signal transducing adap 37.3 2.9E+02 0.01 26.7 13.0 120 33-163 18-145 (163)
29 2nsz_A Programmed cell death p 33.2 2.9E+02 0.0098 25.5 10.6 110 30-144 5-119 (129)
30 3m1i_C Exportin-1; heat repeat 32.8 5.3E+02 0.018 32.9 16.8 143 954-1113 312-482 (1049)
31 1mhq_A ADP-ribosylation factor 32.2 3.2E+02 0.011 25.9 10.9 77 74-162 48-132 (148)
32 2qk2_A LP04448P; mini spindles 32.1 3.6E+02 0.012 27.3 12.5 131 953-1113 29-162 (242)
33 1ug3_A EIF4GI, eukaryotic prot 31.2 3.2E+02 0.011 29.9 12.4 113 29-144 8-122 (339)
34 1juq_A ADP-ribosylation factor 30.9 3.2E+02 0.011 26.6 10.9 63 33-95 16-81 (171)
35 3ldz_A STAM-1, signal transduc 30.8 2.8E+02 0.0094 26.1 10.1 93 34-134 9-109 (140)
36 1elk_A Target of MYB1; superhe 28.2 1.2E+02 0.0042 29.2 7.2 98 33-134 19-125 (157)
37 3ul1_B Importin subunit alpha- 27.4 3.2E+02 0.011 31.6 12.3 100 35-139 59-172 (510)
38 4ffb_C Protein STU2; tubulin f 27.2 1.7E+02 0.0058 30.8 9.1 108 984-1113 139-246 (278)
39 4b8j_A Importin subunit alpha- 23.3 4.2E+02 0.014 30.5 12.3 141 33-183 74-233 (528)
40 2ion_A PDCD4, programmed cell 22.9 4.6E+02 0.016 25.0 10.1 109 31-144 8-121 (152)
41 2x19_B Importin-13; nuclear tr 22.3 3.4E+02 0.012 34.2 12.0 57 951-1014 501-557 (963)
42 2jdq_A Importin alpha-1 subuni 21.3 3.7E+02 0.013 29.9 11.0 139 35-183 22-180 (450)
43 4fdd_B RNA-binding protein FUS 20.8 40 0.0014 22.3 1.3 14 11-24 2-15 (29)
44 3mab_A Uncharacterized protein 20.3 1.1E+02 0.0038 26.8 4.6 33 79-113 52-84 (93)
45 2lqh_B Forkhead box O3, FOXO3A 23.6 25 0.00085 25.4 0.0 12 9-21 24-35 (52)
No 1
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=3.1e-59 Score=598.89 Aligned_cols=906 Identities=14% Similarity=0.164 Sum_probs=633.6
Q ss_pred HHHHHHHHHhhCCCC--HHHHHHHHHhhhcCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Q 001132 33 HSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGF 110 (1147)
Q Consensus 33 ~~le~~~~~l~~~~~--r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~~~~lr~~ 110 (1147)
+.+|+++.++|+|.+ |++|+++|.+|+++|++|..|..||++|++++++|||+++|+++|.++|+.+|+++|.+||++
T Consensus 28 ~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~ 107 (1073)
T 3gjx_A 28 NLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKY 107 (1073)
T ss_dssp HHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHH
Confidence 455666777788753 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCC-----CchhHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhC
Q 001132 111 CLCFVMQHASS-----PEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFS 185 (1147)
Q Consensus 111 ll~~l~~~~~~-----~~~~v~~~l~~~la~i~K~~W~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~l~iL~~lv~E~s 185 (1147)
+++++.+...+ .++.+++|+++++|.|+|++|++ .|++++.++++.+.+ ++.++..++.+|..+++|..
T Consensus 108 Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~----~Wp~fi~dLv~~~~~--~~~~~~~~L~IL~~L~EEV~ 181 (1073)
T 3gjx_A 108 VVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK----HWPTFISDIVGASRT--SESLCQNNMVILKLLSEEVF 181 (1073)
T ss_dssp HHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh----hccHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHH
Confidence 99999875322 34777899999999999999998 688999999999874 78899999999999999976
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcccccccCCCCCc
Q 001132 186 PSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRK 265 (1147)
Q Consensus 186 ~~~ss~~~~~~~~h~k~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~~~~~d~~ 265 (1147)
..++ ..++..+..+.+..++.. ++.|++++..+|++. ....++..+|+++..+++|...+.
T Consensus 182 d~~~--~~l~~~r~~~lk~~L~~~-~~~Il~ll~~iL~~~-----------~~~~lv~~~L~~L~~~~sWI~i~~----- 242 (1073)
T 3gjx_A 182 DFSS--GQITQVKAKHLKDSMCNE-FSQIFQLCQFVMENS-----------QNAPLVHATLETLLRFLNWIPLGY----- 242 (1073)
T ss_dssp TSHH--HHBCHHHHHHHHHHHHHT-CHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHTTTSCTHH-----
T ss_pred hccc--ccccHHHHHHHHHHHHHH-HHHHHHHHHHHhccc-----------CCHHHHHHHHHHHHHHHHhcCHHH-----
Confidence 4321 134567778899999986 999999888877542 145678899999999999996553
Q ss_pred ccccccccccccccCCCCccccccccCCcccHHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhhHHHHHHHHHHhhc
Q 001132 266 ISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSL 345 (1147)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~~~llf~ly~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl 345 (1147)
+.+++++++++..+ + .++.++..|++||.++.+.
T Consensus 243 ----------------------------------i~~~~ll~~L~~~~--L----------~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 243 ----------------------------------IFETKLISTLIYKF--L----------NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp ----------------------------------HHSSSHHHHHHHHT--S----------SSHHHHHHHHHHHHHHHHS
T ss_pred ----------------------------------hccchHHHHHHHHh--c----------CChHHHHHHHHHHHHHHhc
Confidence 56677888774222 2 2377999999999999998
Q ss_pred ccCccCCCChhhHHHHHHHHHHhhhhhcCChhHHHHHHHhCCCh--hhHHHHHHHHHHHHhccChhhhHhhhhccCcchh
Q 001132 346 TGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSE--SEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGT 423 (1147)
Q Consensus 346 ~~~~f~~~~~~~r~~yl~~~l~~i~~il~~~~~~~~~~~~g~~~--~~~~e~cr~L~~l~~~~~~~~~~~~~~~~~q~~~ 423 (1147)
+.+ + ....-...+..++..+..+++...++.+++..|.++ +-+..+||++..+...|. .++..+.. .
T Consensus 277 ~~~---~-~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~-----~lIe~~p~--~ 345 (1073)
T 3gjx_A 277 SVS---Q-YEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHG-----QLLEKRLN--L 345 (1073)
T ss_dssp CSG---G-GHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHH-----HHHHHCGG--G
T ss_pred ccc---c-hHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHH-----HHHhcCcc--c
Confidence 532 1 112234566677777778888777788888877532 344568888877776653 11111000 0
Q ss_pred HHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhccc----ccCCCCC---------CChhhhhhHHHHHH-
Q 001132 424 LTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLD----STGRNVV---------LPLEVRNAAASLFA- 489 (1147)
Q Consensus 424 l~~l~~lt~~~i~~~~~~~~~~~~~~~es~~~lL~~W~~lv~~~~----~~~~~~~---------~p~~~~~~~~~I~~- 489 (1147)
.. .+...+-..... +..++ .|.+++++++|..|...+- +..+..+ .|... ..-..||.
T Consensus 346 ~~---~l~~~l~~ll~~-s~~~d---~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~-~~y~~i~~~ 417 (1073)
T 3gjx_A 346 RE---ALMEALHYMLLV-SEVEE---TEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRR-QLYLTVLSK 417 (1073)
T ss_dssp HH---HHHHHHHHHHHH-TTCSC---HHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHH-HTTHHHHHH
T ss_pred hH---HHHHHHHHHHHH-hCCCc---HHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHH-HHHHHHHHH
Confidence 00 001111111111 22233 7999999999999988652 1000010 11111 11123443
Q ss_pred --HHHhccccccccccCCCCCcch--hh--hcc--hhHHHHHHHHHHHhhhhchhhhHHHHHHHHHHHHHHHhcccCCCC
Q 001132 490 --LIVESELKVASASAMDDNGEFN--YL--QAS--ISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMID 561 (1147)
Q Consensus 490 --~yi~srl~~~~~~~~~~~d~~e--~~--~~d--~~~~~eqL~~ia~l~R~~~~~t~~~L~~ll~~~~~~l~~~~~~~~ 561 (1147)
..+.+||++|+++..+|+|++| ++ .|. ...|+-+.+++.++++.+++++...+.+.+.... +++ .
T Consensus 418 L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~------~~~-~ 490 (1073)
T 3gjx_A 418 VRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQV------NGT-E 490 (1073)
T ss_dssp HHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH------TSC-C
T ss_pred HHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh------cCC-C
Confidence 3477999999987765666666 22 232 4688999999999999999999999888887654 222 4
Q ss_pred cc-hHHHHHHHHHHHH-hhHcccCCCCccccCchhhhhhhhhhhhccCCchHhHHHHHHHHHHhhcCcccccccCCHHHH
Q 001132 562 PT-ETLEELYSLLLIT-GHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLM 639 (1147)
Q Consensus 562 ~~-~~~E~L~WLi~i~-g~~l~d~~~ge~~~iP~~i~~~~~~~~~~~~~~vv~Li~~ll~l~~~~l~~~~~~~~~Sp~l~ 639 (1147)
|+ ..+|.++|.++.+ |++.. +.|...++.++..++++++...+++.++ .++
T Consensus 491 ~sW~~lea~~~aigaIag~~~~----------------------~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~-----~va 543 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHE----------------------EDEKRFLVTVIKDLLGLCEQKRGKDNKA-----IIA 543 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCH----------------------HHHHHHHHHHHHHHHHHHHHSCSHHHHH-----HHH
T ss_pred CCHHHHhHHHHHHHHHHCcCCc----------------------ccccchHHHHHHHHhcccccccccchhH-----HHH
Confidence 43 5889999999755 33311 0133457888899999998766665544 588
Q ss_pred HHHHHHHHHHHhhhcCccccccccCCCcCCCCCccccchhhHhHHHHhhcCCCCc--hhHHHHHHHHHHHhcccCCCchh
Q 001132 640 EAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQG--KPVLDIIVRISMTTLVSYPGEKD 717 (1147)
Q Consensus 640 ~~~l~fl~~~~~~YL~~~~~~~~~~~~~~~~~~~~~~s~~v~~~l~~~fg~~~~g--~~vl~~~l~~i~~~L~~w~~e~~ 717 (1147)
.+++|.+|||++ |+ ..+ +++...+.+.+++++++.++| +++++.|.++...|-..+..-.+
T Consensus 544 s~i~~vlgrY~~-wl----~~h------------~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~ 606 (1073)
T 3gjx_A 544 SNIMYIVGQYPR-FL----RAH------------WKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQV 606 (1073)
T ss_dssp HHHHHHHHHCHH-HH----HHC------------HHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCT
T ss_pred HHHHHHHhhhHH-HH----HhC------------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 899999999987 87 444 466778999999999988888 78999999888888876522100
Q ss_pred HHHHHHHHHHHHHhhcccccchhhccchHHHHHHHhhchhhhhcccchhhHHHHHHHHHHHhcCCCCccchHHHHHHHHH
Q 001132 718 LQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRH 797 (1147)
Q Consensus 718 v~~~t~~~LL~~L~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~m~p 797 (1147)
- -..|.+..+++.+.. ....++++....||+++|.+++..++...+.++++.+|.|
T Consensus 607 ~----------------------e~~p~i~~il~~~~~--~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~ 662 (1073)
T 3gjx_A 607 G----------------------EVMPFIDEILNNINT--IICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLL 662 (1073)
T ss_dssp T----------------------CSSCHHHHHHTSHHH--HHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHH
T ss_pred c----------------------ccchHHHHHHHHHHH--HHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 0 002333334433321 2234788888899999999999877666678899999999
Q ss_pred HHHHHHHhhCCCccc-ccccchhHHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHhh-HHHHHHHHHHhccchHHHHHHH
Q 001132 798 ATAYLVELSGKNDLK-NVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSV-MNPVLLLLEVYKHESAVVYLLL 875 (1147)
Q Consensus 798 ~~~~~~~l~~~~~~~-~~~~~~~ii~~~~~ll~~lrGi~~a~~~~~~~~l~~~l~~~-~~~~~~ll~~y~~~~~vv~~iL 875 (1147)
+.+.|+++.++...+ +...+++.++.+..++|++..+|.+.+.. +.++ .+++++++++|+.+++.+.
T Consensus 663 ~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~--------f~~~~~~i~~~~l~~y~~~s~~i~--- 731 (1073)
T 3gjx_A 663 PNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHP--------FVIQLGRIYLDMLNVYKCLSENIS--- 731 (1073)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGG--------GHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchh--------HHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 999999998643222 45667887889999999999999999864 3333 6778899999999888775
Q ss_pred HHHHHHhhcccccccc----cchhhHHHHHHHHHHHhhcCccc------ee-------EccCCc------hhhhhhchhh
Q 001132 876 KFVVDWVDGQISYLEV----QETNIVIDFCTRLLQLYSSHNIG------KV-------DFSSDS------IEAQAINISQ 932 (1147)
Q Consensus 876 kl~~e~v~n~~~~l~~----~~~~~l~~~~~~li~~y~~~~~g------~~-------~l~~d~------~~~~~l~~~~ 932 (1147)
+.|...+..... ...+.+++++++++++|..+.-. .+ ++.+|. ..+++|.+..
T Consensus 732 ----~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s 807 (1073)
T 3gjx_A 732 ----AAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMA 807 (1073)
T ss_dssp ----HHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHH
T ss_pred ----HHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHH
Confidence 333332222211 12477899999999999765310 00 333332 2356666666
Q ss_pred Hhhhhh----------------eeeecccccccccchhhHHhHHHHHHHHHhhchhhhhcCCHHHHHHHHHHHHhhcccc
Q 001132 933 VVFFGL----------------HIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQ 996 (1147)
Q Consensus 933 vv~~~l----------------~~~ipli~~dll~yPkl~~~yf~Ll~~l~e~~~~~l~~L~~~~f~~ll~sl~~Gl~~~ 996 (1147)
+++.++ .+|++||++|+.+||+++..||+|++.++++||..+.++|++.|+.+++|+.||++|.
T Consensus 808 ~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~ 887 (1073)
T 3gjx_A 808 IIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHT 887 (1073)
T ss_dssp HHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence 665553 4899999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHhhcCCCchHHHHhhhhHH-
Q 001132 997 DSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFP- 1075 (1147)
Q Consensus 997 ~~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~il~~~~~~~~~~~~s~~Ll~- 1075 (1147)
+++|+..++.++.+++..+.+. +..... + ..+....++..+|..+.--.+..-. .--+..|..
T Consensus 888 ~r~i~~~~l~~~~~ll~~~~~~-----~~~~~~-F---------~~~~~~~~~~~i~~v~td~~h~~~f-~~q~~il~~l 951 (1073)
T 3gjx_A 888 MRNVADTGLQILFTLLQNVAQE-----EAAAQS-F---------YQTYFCDILQHIFSVVTDTSHTAGL-TMHASILAYM 951 (1073)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTC-----HHHHHH-H---------HHHHHHHHHHHHHHHHTCTTCGGGH-HHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHhhcC-----hHHHHH-H---------HHHHHHHHHHHHHHHHhCchHhhhh-hHHHHHHHHH
Confidence 9999999999999988776431 111110 0 0223333444444422111111000 000111111
Q ss_pred --HHh--------------CCHHHHHHHHHHHH-HcCCCchHHHHHHHHHHHhhcCCCCCCCcChhhHHHHHHHHHHHHH
Q 001132 1076 --LIL--------------CEPRLYQRLGSELI-ERQANPPFKSRLANALQSLTSSNQLSSTLDRVNYQRFRKNLTNFLV 1138 (1147)
Q Consensus 1076 --LI~--------------~~~~~f~~l~~~li-~~q~~~~~~~~l~~aF~~L~~~~~~~~~l~~~nr~~F~~nl~~F~~ 1138 (1147)
++. -++.+.+++..+++ ++-|+ -.++.+..--..|.+. .++..+|+..+..|+.
T Consensus 952 ~~~~~~~~i~~~l~~~~~~~n~~~~~~~~~~~l~~~fp~-~~~~qi~~fv~~l~~~--------~~d~~~f~~~lrDFli 1022 (1073)
T 3gjx_A 952 FNLVEEGKISTPLNPGNPVNNQMFIQDYVANLLKSAFPH-LQDAQVKLFVTGLFSL--------NQDIPAFKEHLRDFLV 1022 (1073)
T ss_dssp HHHHTTTCCSCSSSCTTTTCHHHHHHHHHHHHHHHHCTT-SCHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCccccccccCCCccHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHH
Confidence 111 15678888888877 44453 3333344433355542 2467899999999999
Q ss_pred Hhhhc
Q 001132 1139 EVRGF 1143 (1147)
Q Consensus 1139 ~vr~~ 1143 (1147)
.+|.+
T Consensus 1023 ~~ke~ 1027 (1073)
T 3gjx_A 1023 QIKEF 1027 (1073)
T ss_dssp HHTSC
T ss_pred HHHHH
Confidence 98876
No 2
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=8e-54 Score=552.93 Aligned_cols=910 Identities=13% Similarity=0.165 Sum_probs=619.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhCCCC--HHHHHHHHHhhhcCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhcccCC
Q 001132 21 GPADLAKLQSIMHSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSF 98 (1147)
Q Consensus 21 ~~~d~~~l~~~~~~le~~~~~l~~~~~--r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~ 98 (1147)
.+||++.|+ +++..+|+|++ |++|+++|.+|+++|++|..|..||+++++++++|||+++|+++|.++|+.
T Consensus 11 ~~~dv~~Le-------~av~~ly~p~~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~ 83 (1023)
T 4hat_C 11 NDLDIALLD-------QVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKL 83 (1023)
T ss_dssp SCCCHHHHH-------HHHHHHHHCCHHHHHHHHHHHHHHHHCTTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred CCCCHHHHH-------HHHHHHhCCChHHHHHHHHHHHHHHcCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhc
Confidence 567766664 45555566654 799999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhccCCC-----chhHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhccCCChhhHHHH
Q 001132 99 LTADEKKSLIGFCLCFVMQHASSP-----EGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIG 173 (1147)
Q Consensus 99 l~~~~~~~lr~~ll~~l~~~~~~~-----~~~v~~~l~~~la~i~K~~W~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~ 173 (1147)
+|+++|..||+++++++.+...+. +++|++|++++++.|+|++|++ .|++++.++++.+.+ ++.++..+
T Consensus 84 L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~----~Wp~~l~dL~~~l~~--~~~~~~~~ 157 (1023)
T 4hat_C 84 LPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ----NWPEFIPELIGSSSS--SVNVCENN 157 (1023)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHTTT--CHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChh----hchHHHHHHHHHhcC--CHHHHHHH
Confidence 999999999999999998753222 5899999999999999999998 789999999999974 67789999
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHc
Q 001132 174 INFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQIL 253 (1147)
Q Consensus 174 l~iL~~lv~E~s~~~ss~~~~~~~~h~k~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~L 253 (1147)
+.+|..+.+|..... ...++..++++.+..++.. ++.||+++..+|... ....++..+|+++..++
T Consensus 158 L~iL~~L~EEV~~~~--~~~l~~~r~~~lk~~l~~~-~~~I~~ll~~iL~~~-----------~~~~l~~~~L~~l~s~l 223 (1023)
T 4hat_C 158 MIVLKLLSEEVFDFS--AEQMTQAKALHLKNSMSKE-FEQIFKLCFQVLEQG-----------ASSSLIVATLESLLRYL 223 (1023)
T ss_dssp HHHHHHHHHHHHTSC--TTTSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHC-----------SSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh--hccchHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC-----------CCHHHHHHHHHHHHHHH
Confidence 999999999965421 1256778888999999987 899999998888642 13467789999999999
Q ss_pred ccccccCCCCCcccccccccccccccCCCCccccccccCCcccHHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhhH
Q 001132 254 NWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAV 333 (1147)
Q Consensus 254 swdF~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~~~llf~ly~~~~~~~~~~~~~~~~~l~~ 333 (1147)
+|.+.+. +.++++++++|+.+.. +++++.
T Consensus 224 ~WI~i~~---------------------------------------i~~~~ll~~l~~~~L~------------~~~~r~ 252 (1023)
T 4hat_C 224 HWIPYRY---------------------------------------IYETNILELLSTKFMT------------SPDTRA 252 (1023)
T ss_dssp TTSCTHH---------------------------------------HHSSSHHHHHHTHHHH------------SHHHHH
T ss_pred HhCCHHH---------------------------------------hcchhHHHHHHHHHcC------------CHHHHH
Confidence 9986553 4567789988843332 167899
Q ss_pred HHHHHHHHHhhcccCccCCC--ChhhHHHHHHHHHHhh-hhhcCChhHHHHHHHhCCC--hhhHHHHHHHHHHHHhccCh
Q 001132 334 SARKLIVQLCSLTGTVFPSD--NGKMQEHHLLQLLSGI-LEWVDPPDVVAQAIESGKS--ESEMLDGCRALLSIATVTTP 408 (1147)
Q Consensus 334 ~~l~cL~qLasl~~~~f~~~--~~~~r~~yl~~~l~~i-~~il~~~~~~~~~~~~g~~--~~~~~e~cr~L~~l~~~~~~ 408 (1147)
.|.+||.++.+.+.+ ++. .+..-...+..++..+ ..+++....+.+++..|.+ ++-+..+||++..+...|.
T Consensus 253 ~A~ecL~eIv~~~~~--~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~- 329 (1023)
T 4hat_C 253 ITLKCLTEVSNLKIP--QDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNR- 329 (1023)
T ss_dssp HHHHHHHHHHTSCCC--SSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHG-
T ss_pred HHHHHHHHHHccccC--CchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHH-
Confidence 999999999986521 111 1111223344445545 4566666667777777652 3445568888888877654
Q ss_pred hhhHhhhhccCcchhHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhcccccCCCCCCChhhhhhHHHHH
Q 001132 409 FVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLF 488 (1147)
Q Consensus 409 ~~~~~~~~~~~q~~~l~~l~~lt~~~i~~~~~~~~~~~~~~~es~~~lL~~W~~lv~~~~~~~~~~~~p~~~~~~~~~I~ 488 (1147)
.++..+ + .+...+.. ..+.+-.. ...++ .|.+.+++++|..+.+++-. . |.. ......+|
T Consensus 330 ----~li~~~-~-~~~~~l~~-~l~~Ll~~---~~~~d---~ei~~~tl~FW~~L~~~l~~---e---~~~-~~~~~~~~ 389 (1023)
T 4hat_C 330 ----ALLESD-E-SLRELLLN-AHQYLIQL---SKIEE---RELFKTTLDYWHNLVADLFY---E---PLK-KHIYEEIC 389 (1023)
T ss_dssp ----GGGTSC-G-GGHHHHHH-HHHHHHHH---TTSSC---HHHHHHHHHHHHHHHHHHTT---S---TTT-GGGGHHHH
T ss_pred ----HHHhCC-c-chhHHHHH-HHHHHHHh---hCCCc---HHHHHHHHHHHHHHHHHHHh---c---hHH-HHHHHHHH
Confidence 122111 0 00111111 11112111 22333 79999999999999986422 1 110 11112333
Q ss_pred H---HHHhccccccccccCCCCCcch--h----hhcchhHHHHHHHHHHHhhhhchhhhHHHHHHHHHHHHHHHhcccCC
Q 001132 489 A---LIVESELKVASASAMDDNGEFN--Y----LQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGM 559 (1147)
Q Consensus 489 ~---~yi~srl~~~~~~~~~~~d~~e--~----~~~d~~~~~eqL~~ia~l~R~~~~~t~~~L~~ll~~~~~~l~~~~~~ 559 (1147)
. ..+..||+.|+++...|+|++| + +.|+.+.|+...+++..++++.+.++.+.+.+.+.+.. .++
T Consensus 390 ~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l------~~~ 463 (1023)
T 4hat_C 390 SQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQI------DGS 463 (1023)
T ss_dssp HHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH------SST
T ss_pred HHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHh------cCC
Confidence 2 3367889999876433333333 1 13456788888899999999999999999888887654 121
Q ss_pred -CCcchHHHHHHHHHHHHhhHcccCCCCccccCchhhhhhhhhhhhccCCchHhHHHHHHHHHHhhcCcccccccCCHHH
Q 001132 560 -IDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRL 638 (1147)
Q Consensus 560 -~~~~~~~E~L~WLi~i~g~~l~d~~~ge~~~iP~~i~~~~~~~~~~~~~~vv~Li~~ll~l~~~~l~~~~~~~~~Sp~l 638 (1147)
.+| ...|-.+|+++ ++..+..+ . .+...+..++..++++++...+++. .+++
T Consensus 464 ~~~W-~~~EA~~~a~g---aIa~~~~~-------~-----------~e~~~l~~vi~~Ll~l~~~~~~~d~-----k~~v 516 (1023)
T 4hat_C 464 EWSW-HNINTLSWAIG---SISGTMSE-------D-----------TEKRFVVTVIKDLLDLCVKKRGKDN-----KAVV 516 (1023)
T ss_dssp TCCH-HHHHHHHHHHH---HTTTSSCH-------H-----------HHHHHHHHHHHHHHHHHHHCCSHHH-----HHHH
T ss_pred CCCH-HHHHHHHHHHH---HHHcCCCc-------h-----------hHHHHHHHHHHHHHHhhhccccCcc-----hHHH
Confidence 244 36677777765 44221110 0 1223466777888888875433222 4678
Q ss_pred HHHHHHHHHHHHhhhcCccccccccCCCcCCCCCccccchhhHhHHHHhhcCCCCc--hhHHHHHHHHHHHhcccCCCch
Q 001132 639 MEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQG--KPVLDIIVRISMTTLVSYPGEK 716 (1147)
Q Consensus 639 ~~~~l~fl~~~~~~YL~~~~~~~~~~~~~~~~~~~~~~s~~v~~~l~~~fg~~~~g--~~vl~~~l~~i~~~L~~w~~e~ 716 (1147)
..+++|.+|||++ |+ ..+ +++...+.+.++++++..+++ .++|+.|.+.+..|-....+.
T Consensus 517 ~~t~~~~lGry~~-wl----~~~------------~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~- 578 (1023)
T 4hat_C 517 ASDIMYVVGQYPR-FL----KAH------------WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQ- 578 (1023)
T ss_dssp HHHHHHHHHTCHH-HH----HHC------------HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSC-
T ss_pred HHHHHHHHHHHHH-HH----hcc------------HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhcc-
Confidence 8999999999986 77 323 344567788888888776565 566666666555554322000
Q ss_pred hHHHHHHHHHHHHHhhcccccchhhccchHHHHHHHhhchhhhhcccchhhHHHHHHHHHHHhcCCCCccchHHHHHHHH
Q 001132 717 DLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTR 796 (1147)
Q Consensus 717 ~v~~~t~~~LL~~L~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~m~ 796 (1147)
... -..|++..+++.+.. ....++++.+..+|++++.++.+.++.....++++.+|.
T Consensus 579 ---------------~~~------e~~p~~~~il~~l~~--~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~ 635 (1023)
T 4hat_C 579 ---------------QPR------ESEPFIQTIIRDIQK--TTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQ 635 (1023)
T ss_dssp ---------------CTT------CSSCHHHHHHHTHHH--HHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTH
T ss_pred ---------------CCC------CCchhHHHHHHHHHH--HHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHH
Confidence 000 003455555554322 122467777889999999999987766668889999999
Q ss_pred HHHHHHHHhhCCCccc-ccccchhHHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHhh-HHHHHHHHHHhccchHHHHHH
Q 001132 797 HATAYLVELSGKNDLK-NVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSV-MNPVLLLLEVYKHESAVVYLL 874 (1147)
Q Consensus 797 p~~~~~~~l~~~~~~~-~~~~~~~ii~~~~~ll~~lrGi~~a~~~~~~~~l~~~l~~~-~~~~~~ll~~y~~~~~vv~~i 874 (1147)
|+...|+++.+....+ ....+++.++.+..+|+++..+|.+.+.. +.|+ -+++++++++|..+++.+.
T Consensus 636 ~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~--------f~~~~~~i~~~~l~~y~~~s~~i~-- 705 (1023)
T 4hat_C 636 LPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGAD--------FYPQLGHIYYNMLQLYRAVSSMIS-- 705 (1023)
T ss_dssp HHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGG--------GHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHH--------HHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 9999999998543211 24456677888999999999999998864 2344 5788899999999998875
Q ss_pred HHHHHHHhhccccccccc----chhhHHHHHHHHHHHhhcCccc------ee-------EccCCc------hhhhhhchh
Q 001132 875 LKFVVDWVDGQISYLEVQ----ETNIVIDFCTRLLQLYSSHNIG------KV-------DFSSDS------IEAQAINIS 931 (1147)
Q Consensus 875 Lkl~~e~v~n~~~~l~~~----~~~~l~~~~~~li~~y~~~~~g------~~-------~l~~d~------~~~~~l~~~ 931 (1147)
+.+.+.+.+.... ..+.+++++++++++|..+.-. .+ ++.+|. ..++++.+.
T Consensus 706 -----~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~ 780 (1023)
T 4hat_C 706 -----AQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCM 780 (1023)
T ss_dssp -----HHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHH
T ss_pred -----HHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHHHH
Confidence 4444433333221 2467899999999999654310 00 222222 225556555
Q ss_pred hHhhhhh----------------eeeecccccccccchhhHHhHHHHHHHHHhhchhhhhcCCHHHHHHHHHHHHhhccc
Q 001132 932 QVVFFGL----------------HIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHH 995 (1147)
Q Consensus 932 ~vv~~~l----------------~~~ipli~~dll~yPkl~~~yf~Ll~~l~e~~~~~l~~L~~~~f~~ll~sl~~Gl~~ 995 (1147)
.+++.++ .+|++||++|+.+||+++..||+|++.++++||..+.++|++.|+.+++|+.||++|
T Consensus 781 s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h 860 (1023)
T 4hat_C 781 TTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKH 860 (1023)
T ss_dssp HHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCC
Confidence 5554443 489999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHhhcCCCchHHHHhhhhHH
Q 001132 996 QDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFP 1075 (1147)
Q Consensus 996 ~~~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~il~~~~~~~~~~~~s~~Ll~ 1075 (1147)
.+++|+..++.++.+++..+.+..+ ...... + ..+....++..+|..+.--.+..-. .--+..|..
T Consensus 861 ~~r~~~~~~l~~~~~ll~~~~~~~~---~~~~~~-f---------~~~~~~~~~~~~~~v~td~~h~~~f-~~~~~~l~~ 926 (1023)
T 4hat_C 861 NNRDVEVNGLQIALDLVKNIERMGN---VPFANE-F---------HKNYFFIFVSETFFVLTDSDHKSGF-SKQALLLMK 926 (1023)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCS---SHHHHH-H---------HHHHHHHHHHHHHHHHHSSSCGGGH-HHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhcCC---hHHHHH-H---------HHHHHHHHHHHHHHHHhCchhhhhH-HHHHHHHHH
Confidence 9999999999999999988764311 111111 0 0233333444444433211111100 001111111
Q ss_pred HH---------------------hCCHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHhhcCCCCCCCcChhhHHHHHHHH
Q 001132 1076 LI---------------------LCEPRLYQRLGSELIE-RQANPPFKSRLANALQSLTSSNQLSSTLDRVNYQRFRKNL 1133 (1147)
Q Consensus 1076 LI---------------------~~~~~~f~~l~~~li~-~q~~~~~~~~l~~aF~~L~~~~~~~~~l~~~nr~~F~~nl 1133 (1147)
|+ ..++.+.+++..+++. .-|+ -.++.+..--..|.+. .++..+|+..+
T Consensus 927 l~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~fp~-~~~~qi~~fv~~l~~~--------~~~~~~f~~~l 997 (1023)
T 4hat_C 927 LISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPH-LTSEQIASFLSALTKQ--------CKDLVVFKGTL 997 (1023)
T ss_dssp HHHHHHTTCCCSCSSCTTSSCTTCCHHHHHHHHHHHHHHHHCTT-SCHHHHHHHHHHHHHT--------TTCHHHHHHHH
T ss_pred HHHHHHcCCcccccCCccccCCCCchHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHc--------cCCHHHHHHHH
Confidence 11 1356788888777766 4452 3344444444456542 24678999999
Q ss_pred HHHHHHhhhc
Q 001132 1134 TNFLVEVRGF 1143 (1147)
Q Consensus 1134 ~~F~~~vr~~ 1143 (1147)
..|+..+|.+
T Consensus 998 rdfli~~ke~ 1007 (1023)
T 4hat_C 998 RDFLVQIKEV 1007 (1023)
T ss_dssp HHHHHHTTSS
T ss_pred HHHhHHhHhh
Confidence 9999988765
No 3
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=5.6e-43 Score=459.50 Aligned_cols=900 Identities=14% Similarity=0.114 Sum_probs=560.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHhhhcCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhcccC
Q 001132 21 GPADLAKLQSIMHSIEIACSSIQMHVN---PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWS 97 (1147)
Q Consensus 21 ~~~d~~~l~~~~~~le~~~~~l~~~~~---r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~ 97 (1147)
.+||..++ ++++++++.+|.+++ |++|+++|.+|+++|++|..|..||+++.+++++++|+++|++.|.++|+
T Consensus 16 ~~m~~~~~----~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~ 91 (963)
T 2x19_B 16 APALDFTV----ENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWS 91 (963)
T ss_dssp --CCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred ccCCHhhH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHH
Confidence 45665444 556777777666555 79999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhccC----CChhhHHHH
Q 001132 98 FLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGI----HGVDTQFIG 173 (1147)
Q Consensus 98 ~l~~~~~~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~~~~~~i~~~~~~~----~s~~~~~~~ 173 (1147)
.+++++|..||+++++++.+.. +.+++|++|++.+++.|+|++|++ .|++++.++++.+.+. .++.++..+
T Consensus 92 ~l~~~~~~~ir~~ll~~l~~~~-~~~~~ir~kl~~~la~i~~~~~p~----~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~ 166 (963)
T 2x19_B 92 DIPTDQYESLKAQLFTQITRFA-SGSKIVLTRLCVALASLALSMMPD----AWPCAVADMVRLFQAEDSPVDGQGRCLAL 166 (963)
T ss_dssp GSCGGGHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHHTTT----TSTTHHHHHHHHHCC------CHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhCcc----ccchHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 9999999999999999998864 457999999999999999999987 6889999999988631 145688999
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHc
Q 001132 174 INFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQIL 253 (1147)
Q Consensus 174 l~iL~~lv~E~s~~~ss~~~~~~~~h~k~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~L 253 (1147)
+.+|..+.+|....+ . +.+++..++..++.. ++.|+.++..++.... + ...+...+++++.
T Consensus 167 l~iL~~l~ee~~~~~---~--~~~~r~~~~~~l~~~-~~~i~~ll~~~l~~~~--------~--~~~~~~~~l~~l~--- 227 (963)
T 2x19_B 167 LELLTVLPEEFQTSR---L--PQYRKGLVRTSLAVE-CGAVFPLLEQLLQQPS--------S--PSCVRQKVLKCFS--- 227 (963)
T ss_dssp HHHHHHHHHHHTTCC---C-----------CCSGGG-HHHHHHHHHHHHSCTT--------C--CHHHHHHHHHHHH---
T ss_pred HHHHHhCHHHHhccc---C--cHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCC--------C--chHHHHHHHHHHH---
Confidence 999999999986541 1 334444555555553 7888887666653210 1 1246677777664
Q ss_pred ccccccCCCCCcccccccccccccccCCCCccccccccCCcccHHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhhH
Q 001132 254 NWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAV 333 (1147)
Q Consensus 254 swdF~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~~~llf~ly~~~~~~~~~~~~~~~~~l~~ 333 (1147)
+|...+... ...+.+++.+|+.+. +++++.
T Consensus 228 ~wi~~~~~~-------------------------------------~~~~~ll~~l~~~l~-------------~~~~~~ 257 (963)
T 2x19_B 228 SWVQLEVPL-------------------------------------QDCEALIQAAFAALQ-------------DSELFD 257 (963)
T ss_dssp HHHTSSCCG-------------------------------------GGTHHHHHHHHHHTT-------------STTTHH
T ss_pred HHHcCCCCc-------------------------------------ccchHHHHHHHHHhC-------------CchHHH
Confidence 687644321 012456777775531 267899
Q ss_pred HHHHHHHHHhhcccCccCCCChhhHHHHHHHHHHhhhhhcCChhHHHHHHHhCCChhhHHHHHHHHHHHHhccChhhhHh
Q 001132 334 SARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDR 413 (1147)
Q Consensus 334 ~~l~cL~qLasl~~~~f~~~~~~~r~~yl~~~l~~i~~il~~~~~~~~~~~~g~~~~~~~e~cr~L~~l~~~~~~~~~~~ 413 (1147)
.+++||.++.+.+.+ ++ +..++..++.++...+ ..+..+...+ +.+.+..+|+++.++.+.++. .+.+
T Consensus 258 ~a~~~l~~i~~~~~~----~~---~~~~~~~l~~~~~~~~---~~~~~~~~~~-d~~~~~~~~~l~~~~~~~~~~-~l~~ 325 (963)
T 2x19_B 258 SSVEAIVNAISQPDA----QR---YVNTLLKLIPLVLGLQ---EQLRQAVQNG-DMETSHGICRIAVALGENHSR-ALLD 325 (963)
T ss_dssp HHHHHHHHHHTCTTG----GG---CHHHHHHHHHHHHTTH---HHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHccccc----cc---CHHHHHHHHHHHHhhH---HHHHHHHHCC-CHHHHHHHHHHHHHHHHHhHH-HHHc
Confidence 999999999875422 11 3446666666655442 1222222222 557788999999998876531 1110
Q ss_pred hhhccCcchhHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhcccccCCC--CCCChhhhhhHHHHHHHH
Q 001132 414 LLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRN--VVLPLEVRNAAASLFALI 491 (1147)
Q Consensus 414 ~~~~~~q~~~l~~l~~lt~~~i~~~~~~~~~~~~~~~es~~~lL~~W~~lv~~~~~~~~~--~~~p~~~~~~~~~I~~~y 491 (1147)
-... -..+..+...++. .+. ....+....+....++++|..++........+ .........+..++...
T Consensus 326 ~~~~------~~~~~~~l~~ll~-~~~-~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~- 396 (963)
T 2x19_B 326 QVEH------WQSFLALVNMIMF-CTG-IPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDV- 396 (963)
T ss_dssp CGGG------HHHHHHHHHHHHH-HHT-CSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-
T ss_pred Cccc------hHHHHHHHHHHHH-HHc-CCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH-
Confidence 0000 0111111111122 111 11001111234688899999998854321100 00000011223334333
Q ss_pred HhccccccccccCCCCCcchhhhcchhHHHHHHHHHHHhhhhchhhhHHHHHHHHHHHHHHHhcccCCCCcchHHHHHHH
Q 001132 492 VESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYS 571 (1147)
Q Consensus 492 i~srl~~~~~~~~~~~d~~e~~~~d~~~~~eqL~~ia~l~R~~~~~t~~~L~~ll~~~~~~l~~~~~~~~~~~~~E~L~W 571 (1147)
+..+|..|++...++.|++|. ++-.+..++..+.+..+++..+.++++.+.+.+.+..+++ .++.+|. ..|-..|
T Consensus 397 ll~~~~~p~~~~~~~~~~de~-~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~---~~~~~w~-~~eaal~ 471 (963)
T 2x19_B 397 LLHKAQFPSDEEYGFWSSDEK-EQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSS---EEPYSWQ-HTEALLY 471 (963)
T ss_dssp HHHHHSCCCHHHHHTSCHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTC---CCSCCHH-HHHHHHH
T ss_pred HHHHHcCCCcccccCCChhHH-HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhc---CCCCchH-HHHHHHH
Confidence 333555544321111111111 1112234455667777888888888888888887665433 1222442 3444444
Q ss_pred HHHHHhhHcccCCCCccccCchhhhhhhhhhhhccCCchHhHHHHHHHHHHhhcCcccccccCCHHHHHHHHHHHHHHHh
Q 001132 572 LLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQ 651 (1147)
Q Consensus 572 Li~i~g~~l~d~~~ge~~~iP~~i~~~~~~~~~~~~~~vv~Li~~ll~l~~~~l~~~~~~~~~Sp~l~~~~l~fl~~~~~ 651 (1147)
.+|++..+-.+.+. ..+.. ++.... .+.. -+|.+..+.+|+++||++
T Consensus 472 ---al~~i~~~~~~~~~-------------------~~l~~----l~~~l~-~l~~------~~~~vr~~~~~~l~~~~~ 518 (963)
T 2x19_B 472 ---GFQSIAETIDVNYS-------------------DVVPG----LIGLIP-RISI------SNVQLADTVMFTIGALSE 518 (963)
T ss_dssp ---HHHHHTTSCCSSCC-------------------SHHHH----HHHHGG-GSCC------CSHHHHHHHHHHHHHTHH
T ss_pred ---HHHHHHhhcCchhh-------------------HHHHH----HHHHHH-hCCC------CcHHHHHHHHHHHHHHHH
Confidence 44454221111111 12222 222211 1211 168899999999999985
Q ss_pred hhcCccccccccCCCcCCCCCccccchhhHhHHHHhhcCCCCchhHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHh
Q 001132 652 TYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALV 731 (1147)
Q Consensus 652 ~YL~~~~~~~~~~~~~~~~~~~~~~s~~v~~~l~~~fg~~~~g~~vl~~~l~~i~~~L~~w~~e~~v~~~t~~~LL~~L~ 731 (1147)
|+. + + .+ .+..+++++..++.. +.|...++ ..|..++
T Consensus 519 -~l~---~-~------------~~---------------------~l~~vl~~l~~~l~~----~~V~~~A~-~al~~l~ 555 (963)
T 2x19_B 519 -WLA---D-H------------PV---------------------MINSVLPLVLHALGN----PELSVSSV-STLKKIC 555 (963)
T ss_dssp -HHH---H-C------------HH---------------------HHTTTHHHHHHHTTC----GGGHHHHH-HHHHHHH
T ss_pred -HHH---h-C------------HH---------------------HHHHHHHHHHHHhCC----chHHHHHH-HHHHHHH
Confidence 653 1 1 01 111233344444432 45666677 6777777
Q ss_pred hcccccchhhccchHHHHHHHhhchhhhhcccchhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhhCCCcc
Q 001132 732 RRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDL 811 (1147)
Q Consensus 732 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~m~p~~~~~~~l~~~~~~ 811 (1147)
+. |+..+ .|.+..+++....--.-..++.+.+..+|++++.++.+.. ++....|+..+|.|+...|+++.+...
T Consensus 556 ~~---~~~~l-~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~~- 629 (963)
T 2x19_B 556 RE---CKYDL-PPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ-VEEILKNLHSLISPYIQQLEKLAEEIP- 629 (963)
T ss_dssp HH---TGGGC-TTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHSSCS-
T ss_pred HH---HHHHH-HhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHhCCC-
Confidence 54 22211 3667767655421000001455667789999999987654 466788999999999999999865431
Q ss_pred cccccchhHHHHHHHHHHHhhhhhhccCCC------------------cHHHHHHHHHhhHHHHHHHHHHhccchHHHHH
Q 001132 812 KNVSQQPDIILLVSCLLERLRGAANATEPR------------------TQKAIYEMGFSVMNPVLLLLEVYKHESAVVYL 873 (1147)
Q Consensus 812 ~~~~~~~~ii~~~~~ll~~lrGi~~a~~~~------------------~~~~l~~~l~~~~~~~~~ll~~y~~~~~vv~~ 873 (1147)
+++.+..+...++++.+++++.... +...+..++...++++..+++.|.++++++..
T Consensus 630 -----~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~ 704 (963)
T 2x19_B 630 -----NPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEA 704 (963)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -----CHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHH
Confidence 4555666678888888888887632 11234556666699999999999999999999
Q ss_pred HHHHHHHHhhcccccccccchhhHHHHHHHHHHHhhcCcccee---------EccCCc-hhhhhhchhhHhhhhheeeec
Q 001132 874 LLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKV---------DFSSDS-IEAQAINISQVVFFGLHIVTP 943 (1147)
Q Consensus 874 iLkl~~e~v~n~~~~l~~~~~~~l~~~~~~li~~y~~~~~g~~---------~l~~d~-~~~~~l~~~~vv~~~l~~~ip 943 (1147)
+++++..++........ ..+-..+-.++..|...+.+.+ .|..++ ..+........+ +.++++
T Consensus 705 ~~~~l~~~~~~~~~~~~----~~l~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~---~~~~l~ 777 (963)
T 2x19_B 705 VCAIFEKSVKTLLDDFA----PMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALFLLV---TSVTLT 777 (963)
T ss_dssp HHHHHHHHHHHSSSTTG----GGHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHhhccccc----ccHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCcchHHHHHHHHHHH---HHHHHH
Confidence 99999998865432221 1122222233334433221111 112221 111111111111 345567
Q ss_pred ccccccccchhhHHhHHHHHHHHHhhchhhhhcCCHHHHHHHHHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 001132 944 LMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGK 1023 (1147)
Q Consensus 944 li~~dll~yPkl~~~yf~Ll~~l~e~~~~~l~~L~~~~f~~ll~sl~~Gl~~~~~~I~~~~l~~l~~l~~~~~~~~~~~~ 1023 (1147)
+++.++.+||++++.||.|+..+++.||..+.. ++..|..++.++.+|+++.++++++.||+++..++++.. +.
T Consensus 778 ~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~-----~~ 851 (963)
T 2x19_B 778 LFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC-ERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCG-----EV 851 (963)
T ss_dssp HHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC-TTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTT-----SS
T ss_pred HHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC-CcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC-----Ch
Confidence 777888899999999999999999999998864 333499999999999999999999999999999987642 11
Q ss_pred ccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHhhcCCCchHHHHhhhhHHHHhCCHHHHHHHHHHHHHcC--CCchHH
Q 001132 1024 VGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQ--ANPPFK 1101 (1147)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~il~~~~~~~~~~~~s~~Ll~LI~~~~~~f~~l~~~li~~q--~~~~~~ 1101 (1147)
.+.. ... .+....++..+|..+.++.++.++ +..+..|+.|+..+++.|.+|..++++.+ |.....
T Consensus 852 ~~~~-~~~----------~~~~~~l~~~l~~~l~~~~~~~~~-~~~~~il~~l~~~~~~~~~~~l~~~l~~~~~p~~~~~ 919 (963)
T 2x19_B 852 ESVG-KVV----------QEDGRMLLIAVLEAIGGQASRSLM-DCFADILFALNKHCFSLLSMWIKEALQPPGFPSARLS 919 (963)
T ss_dssp CHHH-HHT----------TTSHHHHHHHHHHHHTTTSCGGGH-HHHHHHHHHHHHHSHHHHHHHHHHHTCSTTSSCTTCC
T ss_pred HHHH-HHH----------HHHHHHHHHHHHHHhcccCChhHH-HHHHHHHHHHHHHChHHHHHHHHHHhcccCCCCCcCC
Confidence 1111 111 234677888899988766666655 68899999999999999999999998532 222344
Q ss_pred HHHHHHHH-HhhcCCCCCCCcChhhHHHHHHHHHHHHHHhhhcc
Q 001132 1102 SRLANALQ-SLTSSNQLSSTLDRVNYQRFRKNLTNFLVEVRGFL 1144 (1147)
Q Consensus 1102 ~~l~~aF~-~L~~~~~~~~~l~~~nr~~F~~nl~~F~~~vr~~L 1144 (1147)
+..++.|. +|+. .+.++++|++.+..|...+||+-
T Consensus 920 ~~~~~~f~~~l~~--------~~~~~~~f~~~l~~F~~~~r~~~ 955 (963)
T 2x19_B 920 PEQKDTFSQQILR--------ERVNKRRVKEMVKEFTLLCRGLH 955 (963)
T ss_dssp HHHHHHHHHHHTC--------SSCCHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHH--------HHcCcHHHHHHHHHHHHHHcCcc
Confidence 55555554 3432 23478899999999999999974
No 4
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=2.1e-40 Score=437.14 Aligned_cols=909 Identities=14% Similarity=0.184 Sum_probs=557.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhCCCC--HHHHHHHHHhhhcCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhcccCC
Q 001132 21 GPADLAKLQSIMHSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSF 98 (1147)
Q Consensus 21 ~~~d~~~l~~~~~~le~~~~~l~~~~~--r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~ 98 (1147)
.++|++++ +++++.+|+|.+ |++||++|.+|+++|++|..|..||+++++++++++|+.+|++.|.++|..
T Consensus 11 ~~~~~~~l-------~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~ 83 (1049)
T 3m1i_C 11 NDLDIALL-------DQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKL 83 (1049)
T ss_dssp SCCCHHHH-------HHHHHHHHHCCHHHHHHHHHHHHHHHHSTTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGG
T ss_pred CcccHHHH-------HHHHHHHhCCChHHHHHHHHHHHHHHhCchHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCcc
Confidence 45665555 555555677653 799999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhccCCC-----chhHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhccCCChhhHHHH
Q 001132 99 LTADEKKSLIGFCLCFVMQHASSP-----EGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIG 173 (1147)
Q Consensus 99 l~~~~~~~lr~~ll~~l~~~~~~~-----~~~v~~~l~~~la~i~K~~W~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~ 173 (1147)
+++++|..||+++++++.+...+. +++|+++++.++|.|+|++|++ .|+++++++++.+.+ ++.++..+
T Consensus 84 l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~----~Wp~ll~~L~~~~~~--~~~~~~~~ 157 (1049)
T 3m1i_C 84 LPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ----NWPEFIPELIGSSSS--SVNVCENN 157 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHTT--CHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcc----cchHHHHHHHHHHcc--ChHHHHHH
Confidence 999999999999999998764222 3799999999999999999996 788999999999863 66778888
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHc
Q 001132 174 INFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQIL 253 (1147)
Q Consensus 174 l~iL~~lv~E~s~~~ss~~~~~~~~h~k~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~L 253 (1147)
+.+|..+.+|+...++++++ ..+....+..|++. +..||.++...++... ...+...+|+++..++
T Consensus 158 l~~L~~l~eev~~~~~~~~~--~~r~~~lk~~l~~~-~~~i~~~~~~~l~~~~-----------~~~~~~~aL~~l~~~l 223 (1049)
T 3m1i_C 158 MIVLKLLSEEVFDFSAEQMT--QAKALHLKNSMSKE-FEQIFKLCFQVLEQGS-----------SSSLIVATLESLLRYL 223 (1049)
T ss_dssp HHHHHHHHHHHHTSCTTTSC--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcchhhh--hHHHHHHHHHHHHH-HHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHH
Confidence 88888888887653222333 33434455778875 9999999888875421 3467889999999999
Q ss_pred ccccccCCCCCcccccccccccccccCCCCccccccccCCcccHHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhhH
Q 001132 254 NWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAV 333 (1147)
Q Consensus 254 swdF~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~~~llf~ly~~~~~~~~~~~~~~~~~l~~ 333 (1147)
+|...+. +.++.+++++++.|.. +++++.
T Consensus 224 ~wi~~~~---------------------------------------~~~~~ll~~l~~~~l~------------~~~~~~ 252 (1049)
T 3m1i_C 224 HWIPYRY---------------------------------------IYETNILELLSTKFMT------------SPDTRA 252 (1049)
T ss_dssp TTSCTHH---------------------------------------HHSSSHHHHHHTHHHH------------SHHHHH
T ss_pred hhCCHHH---------------------------------------HhhhhHHHHHHHHhCC------------CHhHHH
Confidence 9987543 3456788888876653 167899
Q ss_pred HHHHHHHHHhhcccCccCCCC---hhhHHHHHHHHHHhhhh-hcCChhHHHHHHHhCCC--hhhHHHHHHHHHHHHhccC
Q 001132 334 SARKLIVQLCSLTGTVFPSDN---GKMQEHHLLQLLSGILE-WVDPPDVVAQAIESGKS--ESEMLDGCRALLSIATVTT 407 (1147)
Q Consensus 334 ~~l~cL~qLasl~~~~f~~~~---~~~r~~yl~~~l~~i~~-il~~~~~~~~~~~~g~~--~~~~~e~cr~L~~l~~~~~ 407 (1147)
.+++||+++.+.+- ++.. ...-...+..++..+.. ++++...+...+..+.+ ++-+..+|+++..+...+.
T Consensus 253 ~a~~~L~~i~~~~~---~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~ 329 (1049)
T 3m1i_C 253 ITLKCLTEVSNLKI---PQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNR 329 (1049)
T ss_dssp HHHHHHHHHHHCCC---CTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC---CcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 99999999998752 2211 00011222334444433 55543334333433322 2334578888877765431
Q ss_pred hhhhHhhhhccCcchhHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhcccccCCCCCCChhhhhhHHHH
Q 001132 408 PFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASL 487 (1147)
Q Consensus 408 ~~~~~~~~~~~~q~~~l~~l~~lt~~~i~~~~~~~~~~~~~~~es~~~lL~~W~~lv~~~~~~~~~~~~p~~~~~~~~~I 487 (1147)
.++..... .-..+..+...++.. + .. + ..+....++++|..+++.+.. ..........+..++
T Consensus 330 -----~~~~~~~~--~~~~l~~~l~~ll~~-~--~~-~---d~~v~~~~lefw~~l~~~l~~---~~~~~~~~~~~l~~L 392 (1049)
T 3m1i_C 330 -----ALLESDES--LRELLLNAHQYLIQL-S--KI-E---ERELFKTTLDYWHNLVADLFY---EPLKKHIYEEICSQL 392 (1049)
T ss_dssp -----HHHHSCGG--GHHHHHHHHHHHHHH-H--TS-S---CHHHHHHHHHHHHHHHHHHHH---STTCGGGGHHHHHHH
T ss_pred -----HHHcCChh--hHHHHHHHHHHHHHH-H--cC-C---cHHHHHHHHHHHHHHHHHHHh---chhHHHHHHHHHHHH
Confidence 11111000 001111111111221 1 11 1 257788999999999884310 000111122334555
Q ss_pred HHHHHhccccccccccCCCCCcchh---h---hcchhHHHHHHHHHHHhhhhchhhhHHHHHHHHHHHHHHHhcccCCCC
Q 001132 488 FALIVESELKVASASAMDDNGEFNY---L---QASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMID 561 (1147)
Q Consensus 488 ~~~yi~srl~~~~~~~~~~~d~~e~---~---~~d~~~~~eqL~~ia~l~R~~~~~t~~~L~~ll~~~~~~l~~~~~~~~ 561 (1147)
.. .+..+|..|++....++|++|+ + .|+...++..-+.+-.+++..+.++.+.+.+.+.+..+ .+..+
T Consensus 393 v~-~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~-----~~~~~ 466 (1049)
T 3m1i_C 393 RL-VIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQID-----GSEWS 466 (1049)
T ss_dssp HH-HHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHT-----SSSCC
T ss_pred HH-HHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhC-----CCCCC
Confidence 53 3556777765432112222221 1 11224566667777778888888888888887775541 11223
Q ss_pred cchHHHHHHHHHHHHhhHcccCCCCccccCchhhhhhhhhhhhccCCchHhHHHHHHHHHHhhcCcccccccCCHHHHHH
Q 001132 562 PTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEA 641 (1147)
Q Consensus 562 ~~~~~E~L~WLi~i~g~~l~d~~~ge~~~iP~~i~~~~~~~~~~~~~~vv~Li~~ll~l~~~~l~~~~~~~~~Sp~l~~~ 641 (1147)
|. ..|-..|+ +|++ ++...+. .+...+..++..++++++...+.. -.|.+..+
T Consensus 467 W~-~~eaal~a---lgsi-a~~~~~~-----------------~e~~~l~~v~~~l~~l~~~~~~~~-----~~~~v~~~ 519 (1049)
T 3m1i_C 467 WH-NINTLSWA---IGSI-SGTMSED-----------------TEKRFVVTVIKDLLDLTVKKRGKD-----NKAVVASD 519 (1049)
T ss_dssp HH-HHHHHHHH---HHHT-TTSSCHH-----------------HHHHHHHHHHHHHHHHTTSSCSHH-----HHHHHHHH
T ss_pred HH-HHHHHHHH---HHHH-hcccCch-----------------hhHHHHHHHHHHHHHHHhhhcccc-----chHHHHHH
Confidence 32 34454454 4444 2221110 011125556666666655322111 14677778
Q ss_pred HHHHHHHHHhhhcCccccccccCCCcCCCCCccccchhhHhHHHHhhcCCCCchhHHHHHHHHHHHhcccCCCchhHHHH
Q 001132 642 IVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQEL 721 (1147)
Q Consensus 642 ~l~fl~~~~~~YL~~~~~~~~~~~~~~~~~~~~~~s~~v~~~l~~~fg~~~~g~~vl~~~l~~i~~~L~~w~~e~~v~~~ 721 (1147)
++|.++||.+ |+. .+ +++...+.+.+.+.++. .+.+|...
T Consensus 520 ~~~~lgry~~-~~~----~~------------~~~l~~vl~~ll~~l~~-----------------------~~~~V~~~ 559 (1049)
T 3m1i_C 520 IMYVVGQYPR-FLK----AH------------WNFLRTVILKLFEFMHE-----------------------THEGVQDM 559 (1049)
T ss_dssp HHHHHHHCHH-HHH----HC------------HHHHHHHHHHHHHHTTS-----------------------SCHHHHHH
T ss_pred HHHHHHHHHH-HHH----hH------------HHHHHHHHHHHHHHhcC-----------------------CCHHHHHH
Confidence 9999999985 663 12 12222334444444432 13455555
Q ss_pred HHHHHHHHHhhcccccchhhc------cchHHHHHHHhhchhhhhcccchhhHHHHHHHHHHHhcCCCCccchHHHHHHH
Q 001132 722 TCNQLLHALVRRKNVCVHLVA------LGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLT 795 (1147)
Q Consensus 722 t~~~LL~~L~~~~~~~~~l~~------~~~~~~l~~~~~~~~~~~~l~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~m 795 (1147)
++ ..|..++.... ..++. .|.+..+++.+.. ....++++....+|++++.+++...+.+....++..+|
T Consensus 560 A~-~al~~l~~~~~--~~l~~~~~~~~~p~~~~il~~l~~--~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~ 634 (1049)
T 3m1i_C 560 AC-DTFIKIVQKCK--YHFVIQQPRESEPFIQTIIRDIQK--TTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLM 634 (1049)
T ss_dssp HH-HHHHHHHHHHT--HHHHSCCTTCSSCHHHHHHHTHHH--HHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHT
T ss_pred HH-HHHHHHHHHHH--HHhhcccCCCCCcHHHHHHHHHHH--HHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 66 56666665421 12221 2667777765432 12235556677899999999887665566788999999
Q ss_pred HHHHHHHHHhhCCCccc-ccccchhHHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHhhHHHHHHHHHHhccch------
Q 001132 796 RHATAYLVELSGKNDLK-NVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHES------ 868 (1147)
Q Consensus 796 ~p~~~~~~~l~~~~~~~-~~~~~~~ii~~~~~ll~~lrGi~~a~~~~~~~~l~~~l~~~~~~~~~ll~~y~~~~------ 868 (1147)
.|+.++|.++.+....+ +...+++.+..+..+++++..++.+.+....+.+- +++.+++.+|...+
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~-------~i~~~~l~~~~~~~~~~~~~ 707 (1049)
T 3m1i_C 635 QLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLG-------HIYYNMLQLYRAVSSMISAQ 707 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 99999999987543211 11224455556778999999999888765332111 12222222222211
Q ss_pred ------------------HHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHhhcCccceeEccCCchhhhhhch
Q 001132 869 ------------------AVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKVDFSSDSIEAQAINI 930 (1147)
Q Consensus 869 ------------------~vv~~iLkl~~e~v~n~~~~l~~~~~~~l~~~~~~li~~y~~~~~g~~~l~~d~~~~~~l~~ 930 (1147)
.+...+++++..+..+.. -+...-...+=..+-.++..|.+.... . . .+..+.+
T Consensus 708 ~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~-~l~~~~~~~~~~~l~~ll~~~~~~~~~-~---~---~~~~l~l 779 (1049)
T 3m1i_C 708 VAAEGLIATKTPKVRGLRTIKKEILKLVETYISKAR-NLDDVVKVLVEPLLNAVLEDYMNNVPD-A---R---DAEVLNC 779 (1049)
T ss_dssp HHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCS-CHHHHHHHTHHHHHHHHHHHHHHSCGG-G---C---CTHHHHH
T ss_pred HHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHhCCcc-c---c---cHHHHHH
Confidence 222333444444433210 000000000111122233344321111 0 0 0011111
Q ss_pred hhHh---------------hhh-heeeecccccccccchhhHHhHHHHHHHHHhhchhhhhcCCHHHHHHHHHHHHhhcc
Q 001132 931 SQVV---------------FFG-LHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLH 994 (1147)
Q Consensus 931 ~~vv---------------~~~-l~~~ipli~~dll~yPkl~~~yf~Ll~~l~e~~~~~l~~L~~~~f~~ll~sl~~Gl~ 994 (1147)
+..+ +.. +.+++++|+.++.+||+++..||.|+..+.++||..+..+|++.|..+++++.||++
T Consensus 780 ~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~ 859 (1049)
T 3m1i_C 780 MTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFK 859 (1049)
T ss_dssp HHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 1111 111 235567777889999999999999999999999999998999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHhhcCCCchHHHHhhhhH
Q 001132 995 HQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALF 1074 (1147)
Q Consensus 995 ~~~~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~il~~~~~~~~~~~~s~~Ll 1074 (1147)
|.++++.+.+++++..+.+...+ .+........ ..+.+..++..+|..++...++. -.+..+..|.
T Consensus 860 ~~~~~~~~~~l~~l~~l~~~~~~---~~~~~~~~~f----------~~~~~~~l~~~~~~~l~~~~h~s-~~~~~~~~l~ 925 (1049)
T 3m1i_C 860 HNNRDVEVNGLQIALDLVKNIER---MGNVPFANEF----------HKNYFFIFVSETFFVLTDSDHKS-GFSKQALLLM 925 (1049)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHH---SCSCHHHHHH----------HHHHHHHHHHHHHHHHHSTTCGG-GHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHh---cCChHHHHHH----------HHHHHHHHHHHHHHHHhcchHhh-hHHHHHHHHH
Confidence 99999999999999999988643 1111111111 13556678888888665444443 3456777888
Q ss_pred HHHhC---------------------CHHHHHHHHHHHHHcCCCchHHHHHHHHH-HHhhcCCCCCCCcChhhHHHHHHH
Q 001132 1075 PLILC---------------------EPRLYQRLGSELIERQANPPFKSRLANAL-QSLTSSNQLSSTLDRVNYQRFRKN 1132 (1147)
Q Consensus 1075 ~LI~~---------------------~~~~f~~l~~~li~~q~~~~~~~~l~~aF-~~L~~~~~~~~~l~~~nr~~F~~n 1132 (1147)
.||.. +..++.++..+++.+.- |...+.-.+.| ..|... +.+|.+|++.
T Consensus 926 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~f~~~l~~~--------~~~~~~f~~~ 996 (1049)
T 3m1i_C 926 KLISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAF-PHLTSEQIASFLSALTKQ--------YKDLVVFKGT 996 (1049)
T ss_dssp HHHHHHHTTCCCSCSSCGGGSSTTCCHHHHHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHC--------TTCHHHHHHH
T ss_pred HHHHHHhcCcccccccCccccCCCCCcHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHc--------cCCHHHHHHH
Confidence 77631 44588888888884432 22333444444 555542 4567899999
Q ss_pred HHHHHHHhhhc
Q 001132 1133 LTNFLVEVRGF 1143 (1147)
Q Consensus 1133 l~~F~~~vr~~ 1143 (1147)
+..|..++|++
T Consensus 997 ~rdf~~~~~~~ 1007 (1049)
T 3m1i_C 997 LRDFLVQIKEV 1007 (1049)
T ss_dssp HHHHHHHHTSS
T ss_pred HHHHhHhhhhh
Confidence 99999999986
No 5
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=9.5e-34 Score=371.91 Aligned_cols=914 Identities=11% Similarity=0.076 Sum_probs=528.8
Q ss_pred HHHHHHHHHhhCCC--CHHHHHHHHHhhhcCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Q 001132 33 HSIEIACSSIQMHV--NPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGF 110 (1147)
Q Consensus 33 ~~le~~~~~l~~~~--~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~~~~lr~~ 110 (1147)
++++++++.+|+|. .|++|+++|.+|+++|++|..|..||+.+++++++++|+++|+++|.++|..+|+++|..||++
T Consensus 7 ~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ 86 (971)
T 2x1g_F 7 ARLEEAVVSFYRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQK 86 (971)
T ss_dssp ----CTHHHHHTSTTTC----CHHHHHTTTSTHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHH
Confidence 45666666667754 3899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCchhHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhccCC-----ChhhHHHHHHHHHHHHhhhC
Q 001132 111 CLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIH-----GVDTQFIGINFLESLVSEFS 185 (1147)
Q Consensus 111 ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~~~~~~i~~~~~~~~-----s~~~~~~~l~iL~~lv~E~s 185 (1147)
+++++.+.. +.+++|++|++.+++.|+|+.|+ .|++++.++.+.+.+.. ++.++..++.+|..+.+|..
T Consensus 87 ll~~l~~~~-~~~~~vr~kl~~~la~i~~~~~p-----~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~ 160 (971)
T 2x1g_F 87 ILESIVRFA-GGPKIVLNRLCISLGAYIVHMLG-----EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQ 160 (971)
T ss_dssp HHHHHHHHT-TSCHHHHHHHHHHHHHHHHHTTC-----C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHHHHccc-----cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHh
Confidence 999998875 45799999999999999999998 48899999999986410 45689999999999999975
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcc--cccccCCCC
Q 001132 186 PSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILN--WDFQFDTSG 263 (1147)
Q Consensus 186 ~~~ss~~~~~~~~h~k~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Ls--wdF~~~~~d 263 (1147)
..+ .. .+....+..++. .++.++.++.+++..... .........+...+|+++..++. |.+.+
T Consensus 161 ~~~----~~--~~r~~~~~~l~~-~~~~vl~ll~~~l~~~~~----~~~~~~~~~~~~~al~~l~~~~~~~~ip~~---- 225 (971)
T 2x1g_F 161 VIH----TS--VKRVVLRAEIAK-RVQLVIHTVERYLKLQMN----RVWDAEAYSNMNRAVKCVGTWIKNIGYTIE---- 225 (971)
T ss_dssp HCC----CS--SCHHHHHHHHHT-THHHHHHHHHHHHHHHTT----SCCCHHHHHHHHHHHHHHHHHHHHSCCCGG----
T ss_pred ccC----cH--HHHHHHHHHHHH-HHHHHHHHHHHHHhcccC----CCCCccchhHHHHHHHHHHHHHhhCCcCcc----
Confidence 432 11 122233444544 378888877777654321 00001123677889998887776 65433
Q ss_pred CcccccccccccccccCCCCccccccccCCcccHHHhhccchHHHHHHH---HHH-hhhcccCCC-CCCCchhhHHHHHH
Q 001132 264 RKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNL---YSA-LRQKFSSEG-YWLDCPIAVSARKL 338 (1147)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~~~llf~l---y~~-~~~~~~~~~-~~~~~~l~~~~l~c 338 (1147)
.++.+++++|++ |.. .+.. .+|. ...+++++..+++|
T Consensus 226 -------------------------------------~~~~ll~~l~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~ 267 (971)
T 2x1g_F 226 -------------------------------------GCVTITAVLLEVVHKCYWPCIHA-GDGCMTADENELAESCLKT 267 (971)
T ss_dssp -------------------------------------GHHHHHHHHHHHHHHHHSSSCC----CCCCHHHHHHHHHHHHH
T ss_pred -------------------------------------ccccHHHHHHhhhhhhccccccc-cccccCcCCcHHHHHHHHH
Confidence 114466777761 110 0000 0000 00126789999999
Q ss_pred HHHHhhcccCccCCCChhhHHHHHHHHHHhhhhhcCChhHHHHHHHhCCC---hhhHHHHHHHHHHHHhccChhhhHhhh
Q 001132 339 IVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKS---ESEMLDGCRALLSIATVTTPFVFDRLL 415 (1147)
Q Consensus 339 L~qLasl~~~~f~~~~~~~r~~yl~~~l~~i~~il~~~~~~~~~~~~g~~---~~~~~e~cr~L~~l~~~~~~~~~~~~~ 415 (1147)
|+++.+...+ + .+..++..++.++..+.+. ...+...+ + ++..+.+||++.++.+.+.. .+.+-+
T Consensus 268 l~~i~~~~~~-----~--~~~~~~~~l~~~~~~~~~~---~~~~~~~~-d~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~ 335 (971)
T 2x1g_F 268 MVNIIIQPDC-----H--NYPKTAFVLIKMFLDSLSE---ITKTEWKR-ENDNEDIIVHIYMLFVSSVERHST-LLLSGI 335 (971)
T ss_dssp HHHHHHCSGG-----G--GCHHHHHHHHHHHHHHHHH---HHHHHSSS-SCSCSHHHHHHHHHHHHHHHHTHH-HHHHHH
T ss_pred HHHHHcCccc-----c--ccHHHHHHHHHHHHHhHHH---HHHHHhcc-cccchHHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 9999876421 1 2556777777766554321 11111111 3 36778899999999876431 111000
Q ss_pred hccCcchhHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhcccccCCCCCCChhhhhhHHHHHHHHHh--
Q 001132 416 KSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVE-- 493 (1147)
Q Consensus 416 ~~~~q~~~l~~l~~lt~~~i~~~~~~~~~~~~~~~es~~~lL~~W~~lv~~~~~~~~~~~~p~~~~~~~~~I~~~yi~-- 493 (1147)
...... ....+..+...++. .+. ...-.....+.....+++|..+++...........+. ......++|...+.
T Consensus 336 ~~~~~~-~~~~l~~~l~~ll~-~~~-~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~l 411 (971)
T 2x1g_F 336 TSADPE-LSILVHRIVQEILH-CTD-KPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHK-CWEYIKPLYAHLTRIL 411 (971)
T ss_dssp HTCCHH-HHHHHHHHHHHHHH-HHH-CSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CH-HHHHHHHHHHHHHHHH
T ss_pred ccCccc-ccHHHHHHHHHHHH-HHc-CCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHH-HHHHHHHHHHHHHHHH
Confidence 000000 00111121222222 111 1000001145667899999998763311100000111 11122233333222
Q ss_pred -ccccccccccCCCCCcchhhhcc-hhHHHHHHHHHHHhhhhchhhhHHHHHHHHHHHHHHHhcccCCCCcchHHHHHHH
Q 001132 494 -SELKVASASAMDDNGEFNYLQAS-ISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYS 571 (1147)
Q Consensus 494 -srl~~~~~~~~~~~d~~e~~~~d-~~~~~eqL~~ia~l~R~~~~~t~~~L~~ll~~~~~~l~~~~~~~~~~~~~E~L~W 571 (1147)
.++..|++...+++| .+++++ ...++.--+.+-.+++..++.+.+.+.+.+.+....+.. +..+|. +..=
T Consensus 412 ~~~~~~p~~~~~~~~d--~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~--~~~~w~----~~ea 483 (971)
T 2x1g_F 412 VRKSEQPDEKSLAKWS--SDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQR--HPTHWT----KLEA 483 (971)
T ss_dssp HHHTSCCCTTTTSCSC--HHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHH--CTTCCH----HHHH
T ss_pred HHHhcCCCcccccccC--HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccC--CCCcHH----HHHH
Confidence 344444321111111 111111 223344455566667777777888888888776655532 122443 5555
Q ss_pred HHHHHhhHcccCCCCccccCchhhhhhhhhhhhccCCchHhHHHHHHHHHHhhcCcccccccCCHHHHHHHHHHHHHHHh
Q 001132 572 LLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQ 651 (1147)
Q Consensus 572 Li~i~g~~l~d~~~ge~~~iP~~i~~~~~~~~~~~~~~vv~Li~~ll~l~~~~l~~~~~~~~~Sp~l~~~~l~fl~~~~~ 651 (1147)
+++..|++..+-.+++. ..+.. ++.+.. .+..+. ..|.+..+.+|+++||+.
T Consensus 484 al~~l~~iae~~~~~~~-------------------~~l~~----l~~~l~-~l~~~d----~~~~vr~~a~~~l~~~~~ 535 (971)
T 2x1g_F 484 CIYSFQSVAEHFGGEEK-------------------RQIPR----LMRVLA-EIPYEK----LNVKLLGTALETMGSYCN 535 (971)
T ss_dssp HHHHHHHTTTC-------------------------CHHHH----HHHHHH-HSCTTT----SCHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHhhcChhhh-------------------HHHHH----HHHHHH-hcCccc----cCHHHHHHHHHHHHHHHH
Confidence 66667776221111111 11222 222111 122111 268899999999999984
Q ss_pred hhcCccccccccCCCcCCCCCccccchhhHhHHHHhhcCCCCchhHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHh
Q 001132 652 TYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALV 731 (1147)
Q Consensus 652 ~YL~~~~~~~~~~~~~~~~~~~~~~s~~v~~~l~~~fg~~~~g~~vl~~~l~~i~~~L~~w~~e~~v~~~t~~~LL~~L~ 731 (1147)
|+..+ . +... .+++.+++ .+ . .+|...++ ..|..++
T Consensus 536 -~l~~~---~-------------~~l~-----------------~vl~~l~~----~l-~----~~v~~~A~-~al~~l~ 571 (971)
T 2x1g_F 536 -WLMEN---P-------------AYIP-----------------PAINLLVR----GL-N----SSMSAQAT-LGLKELC 571 (971)
T ss_dssp -HHC--------------------CHH-----------------HHHHHHHH----HH-H----SSCHHHHH-HHHHHHH
T ss_pred -HHhcC---H-------------HHHH-----------------HHHHHHHH----Hh-C----hHHHHHHH-HHHHHHH
Confidence 66411 1 1111 12222332 22 1 34556666 6777777
Q ss_pred hcccccchhhccchHHHHHHHhhchhhhhcccchhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhhCCCcc
Q 001132 732 RRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDL 811 (1147)
Q Consensus 732 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~m~p~~~~~~~l~~~~~~ 811 (1147)
+. |+..+ .|.+..+++.+..--.-..++.+.+..++++++.++.... +++...|+..++.|+...|+++.+....
T Consensus 572 ~~---~~~~l-~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~-~~~~~~~~~~ll~~l~~~l~~~~~~~~~ 646 (971)
T 2x1g_F 572 RD---CQLQL-KPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR-PEEIPKYLDIIVSPCFEELQAICQADSK 646 (971)
T ss_dssp HH---CHHHH-HHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC-TTHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HH---HHHhc-cccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 54 22211 2555555654321000001445667789999999987654 5677889999999999999998765321
Q ss_pred cccccchhHHHHHHHHHHHhhhhhhccCCCc---------HHHHHHHHHhhHHHHHHHHHHhccchHHHHHHHHHHHHHh
Q 001132 812 KNVSQQPDIILLVSCLLERLRGAANATEPRT---------QKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWV 882 (1147)
Q Consensus 812 ~~~~~~~~ii~~~~~ll~~lrGi~~a~~~~~---------~~~l~~~l~~~~~~~~~ll~~y~~~~~vv~~iLkl~~e~v 882 (1147)
+++-+..++..+..+.|++.+..+.. ...+..++...++++..+++.|.++++|+..+++++...+
T Consensus 647 -----~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~ 721 (971)
T 2x1g_F 647 -----TPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAI 721 (971)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred -----ChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 23334455677777777777665420 1223445555588888888888888999999999999887
Q ss_pred hcccccccccchhhHHHHHHHHHHHhhcCcccee---------EccCCchhhhhhchhhHhhhhh-eeeecccc----cc
Q 001132 883 DGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKV---------DFSSDSIEAQAINISQVVFFGL-HIVTPLMS----GD 948 (1147)
Q Consensus 883 ~n~~~~l~~~~~~~l~~~~~~li~~y~~~~~g~~---------~l~~d~~~~~~l~~~~vv~~~l-~~~ipli~----~d 948 (1147)
...+..+.+ .+=..+-.++..|.....+.+ .|+.++...+.+. ..+..+ ..++.+++ ++
T Consensus 722 ~~~~~~~~p----~l~~~~~~l~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~~~l~---~~~~~~~~~~~~~l~~~~~~~ 794 (971)
T 2x1g_F 722 TNLRSSFQP----MLQDLCLFIVASFQTRCCAPTLEISKTAIVMFFKDEGCKPLMQ---QLLREFIQHSFKLFESTPEQN 794 (971)
T ss_dssp HHHHC--CT----HHHHHHHHHHHHCC--CCHHHHHHHHHHHTTCCC-----HHHH---HHHHHHHHHHHHHHTSCTTTH
T ss_pred Hhhhhhccc----cHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCcchHHHHH---HHHHHHHHHHHHHHhcccccC
Confidence 654332211 111122222333433211100 2222211001111 111110 11122222 36
Q ss_pred cccchhhHHhHHHHHHHHHhhchhhhhcCCHHH-HHHHHHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhhcCCCccch
Q 001132 949 LLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEA-FAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLA 1027 (1147)
Q Consensus 949 ll~yPkl~~~yf~Ll~~l~e~~~~~l~~L~~~~-f~~ll~sl~~Gl~~~~~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~ 1027 (1147)
+.++|++++.||.|+..+.+.+|..+.. ++. +..++.+...++++.++++.+.++.++..+++.- ......
T Consensus 795 ~~~~pd~~~~~f~ll~~~l~~~p~~~~~--s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~-----~~~~~~- 866 (971)
T 2x1g_F 795 FSNISDTMETFFGCLTQIIKKIPQVLED--KTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQS-----RNHAHV- 866 (971)
T ss_dssp HHHTHHHHHHHHHHHHHHHHSSGGGGGC--TTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHH-----TTCHHH-
T ss_pred CccCchHHHHHHHHHHHHHHhCcHHHcC--CcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC-----CchHHH-
Confidence 6789999999999999999999998854 345 8999999999999999999999999998887761 111001
Q ss_pred hhhhccCCCCCCCchhHHHHHHHHHHHHHHhhcCCCchHHHHhhhhHHHHhCCHHHHHHHHHHHHHc--CCCchHHHHHH
Q 001132 1028 AQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIER--QANPPFKSRLA 1105 (1147)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~l~~~l~~ll~~il~~~~~~~~~~~~s~~Ll~LI~~~~~~f~~l~~~li~~--q~~~~~~~~l~ 1105 (1147)
.+.. ......+++.++..+ .+.+..+.++.++..|..|+..+|+.+..|..+.+.. -|.....+..+
T Consensus 867 ~~~~----------~~~g~~l~~~l~~~~-~~~~~~s~~~~~a~~l~~l~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~ 935 (971)
T 2x1g_F 867 TEVV----------LATGEQTLYTAMMCV-GYLTPRSQVDKFADILLAMNRKYAAEMAVWMKSLMSTPNFPTQLITDADK 935 (971)
T ss_dssp HHHH----------HHHHHHHHHHHHHHH-HTTSCGGGGGGGHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCSSSCHHHH
T ss_pred HHHH----------HHhHHHHHHHHHHHh-cccCChhHHHHHHHHHHHHHHHCcHHHHHHHHHHhcccCCCCCcCCHHHH
Confidence 1111 244555677777765 4567778788999999999999999999999988862 23333455666
Q ss_pred HHHH-HhhcCCCCCCCcChhhHHHHHHHHHHHHHHhhhccc
Q 001132 1106 NALQ-SLTSSNQLSSTLDRVNYQRFRKNLTNFLVEVRGFLR 1145 (1147)
Q Consensus 1106 ~aF~-~L~~~~~~~~~l~~~nr~~F~~nl~~F~~~vr~~L~ 1145 (1147)
+.|. +|+.. |.++++|++.+..|...+||+-.
T Consensus 936 ~~f~~~l~~~--------~~~~r~~~~~~~~f~~~~r~~~~ 968 (971)
T 2x1g_F 936 TRYTALIIKE--------KVNKRLLQQHLSEMAMKTRGLTE 968 (971)
T ss_dssp HHHHHHHHHC--------SSCHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHH--------HhChHhHHHHHHHHHHHHcCccc
Confidence 6664 55432 33689999999999999999753
No 6
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=3.4e-31 Score=342.20 Aligned_cols=914 Identities=12% Similarity=0.099 Sum_probs=505.6
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhCCC-C---HHHHHHHHHhhhcCCCcHHHHHHHHhcCC--chhHHHHHHHHHHHHHhc
Q 001132 21 GPADLAKLQSIMHSIEIACSSIQMHV-N---PAAAEATILGLCQSPQPYKACQFILENSQ--VANARFQAAAAIRDAAMR 94 (1147)
Q Consensus 21 ~~~d~~~l~~~~~~le~~~~~l~~~~-~---r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~--~~~~~f~a~~~L~~~i~~ 94 (1147)
|+||++++ ++|.+..|.|. + |++|+++|.+||++|++|..|..||.+++ +++++|||+++|+++|.
T Consensus 1 ~~m~~~~v-------~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~- 72 (980)
T 3ibv_A 1 GPMSAQDV-------ENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR- 72 (980)
T ss_dssp --CHHHHH-------HHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH-
T ss_pred CCCCHHHH-------HHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-
Confidence 57886665 33333334543 3 79999999999999999999999999875 78999999999999999
Q ss_pred ccCCCCHH----HHHHHHHHHHHHHHhcc-CCCchhHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhccCCCh-h
Q 001132 95 EWSFLTAD----EKKSLIGFCLCFVMQHA-SSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGV-D 168 (1147)
Q Consensus 95 ~W~~l~~~----~~~~lr~~ll~~l~~~~-~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~~~~~~i~~~~~~~~s~-~ 168 (1147)
.++++ ++..||+++++++.+.. .+.+++|++|++.+++.|+|+.|++ .|++++.++++.+.+ +++ .
T Consensus 73 ---~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~----~Wp~~i~~l~~~~~~-~~~~~ 144 (980)
T 3ibv_A 73 ---EWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS----NWNDFFASLQGVIAA-SSQSE 144 (980)
T ss_dssp ---HCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHHH-HCCHH
T ss_pred ---hCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc----cCchHHHHHHHHhcC-CChhH
Confidence 59999 99999999999998742 1358999999999999999999998 789999999999975 233 3
Q ss_pred hHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHH---HHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHH
Q 001132 169 TQFIGINFLESLVSEFSPSTSSAMGLPREFHEQ---CRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAA 245 (1147)
Q Consensus 169 ~~~~~l~iL~~lv~E~s~~~ss~~~~~~~~h~k---~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~ 245 (1147)
.....|++|..+.+|+... .+.++.+.+.| .|..++++++..|++.++.+|.+.... .+..+...+
T Consensus 145 ~~~~~LriL~~i~EEv~~~---~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~--------~~~~l~~~~ 213 (980)
T 3ibv_A 145 FSNFYLKVLLSIGDEIADS---LVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNA--------KNYGTVGLC 213 (980)
T ss_dssp HHHHHHHHHHHHHHHHCCC---CSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--------TCHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHhc---ccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhcc--------CCHHHHHHH
Confidence 5677888999888998764 23455544444 488899888999999999999876421 244678999
Q ss_pred HHHHHHHcccccccCCCCCcccccccccccccccCCCCccccccccCCcccHHHhhccchHHHHHHHHHHhhhcccCCCC
Q 001132 246 LRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGY 325 (1147)
Q Consensus 246 L~l~~~~LswdF~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~~~llf~ly~~~~~~~~~~~~ 325 (1147)
|+|+..+++|...+. +.++.+++++|+...
T Consensus 214 L~~l~s~i~wi~~~~---------------------------------------i~~~~ll~~l~~~L~----------- 243 (980)
T 3ibv_A 214 LQVYAQWVSWININL---------------------------------------IVNEPCMNLLYSFLQ----------- 243 (980)
T ss_dssp HHHHHHHTTTSCHHH---------------------------------------HHCHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHhhcCHHh---------------------------------------hhcchHHHHHHHHcC-----------
Confidence 999999999986553 555778888885532
Q ss_pred CCCchhhHHHHHHHHHHhhcccCccCCCChhhHHHHHHHHHHhhhhhcCChhHHHHHHHhCCChhhHHHHHHHHHHHHhc
Q 001132 326 WLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATV 405 (1147)
Q Consensus 326 ~~~~~l~~~~l~cL~qLasl~~~~f~~~~~~~r~~yl~~~l~~i~~il~~~~~~~~~~~~g~~~~~~~e~cr~L~~l~~~ 405 (1147)
+++++..|.+||.++.+-+.+ ++ .+...+..+ .+..++.... ....+.+....+||++..+.+.
T Consensus 244 --~~~~r~~A~ecL~ei~~k~~~----~~--~k~~li~~l--~L~~~~~~l~------~~~~D~d~~~~la~L~~~~ge~ 307 (980)
T 3ibv_A 244 --IEELRCAACETMTEIVNKKMK----PL--EKLNLLNIL--NLNLFFSKSQ------EQSTDPNFDEHVAKLINAQGVE 307 (980)
T ss_dssp --SHHHHHHHHHHHHHHHHSCCC----HH--HHHHHHHHH--HHHHHHCC-----------CCHHHHHHHHHHHHHHHHH
T ss_pred --ChHHHHHHHHHHHHHHHcCCC----hh--hHHHHHHHH--hHHHHHHHHh------cccccHHHHHHHHHHHHHHHHH
Confidence 267899999999999986542 22 344444442 2333443211 0012455556788888877653
Q ss_pred cChhhhHhhhhccCc-chhH-HHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhcccccCCCCCCChhhhhh
Q 001132 406 TTPFVFDRLLKSIRP-FGTL-TLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNA 483 (1147)
Q Consensus 406 ~~~~~~~~~~~~~~q-~~~l-~~l~~lt~~~i~~~~~~~~~~~~~~~es~~~lL~~W~~lv~~~~~~~~~~~~p~~~~~~ 483 (1147)
+... . +.... ..+. .........++... ......+ +.+.....+.+|..++....+...+.+.+.....+
T Consensus 308 l~~~--~---~~~~~~~~~~~~~~~~~l~~ll~~l-L~~~~~~--~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~ 379 (980)
T 3ibv_A 308 LVAI--K---SDPSELSPELKENCSFQLYNLFPYL-IRYLSDD--YDETSTAVFPFLSDLLVSLRKESSSKELSASLKEF 379 (980)
T ss_dssp HHHH--H---TSCC--CHHHHHHHHHHHHHTHHHH-HHHHTCS--SHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHH
T ss_pred HHHH--c---cCccccchhhhhhHHHHHHHHHHHH-HHHhCCC--chhHHHHHHHHHHHHHHHHHhccccccccHHHHHH
Confidence 2211 0 00000 0000 01111111122221 1111111 24777889999999987554321122233322233
Q ss_pred HHHHHHHHHhccccccccccCCCCCcchhhhcc-hhHHHHHHHHHHHhhhhchhhhHHHHHHHHHHHHHHHhcccCCCCc
Q 001132 484 AASLFALIVESELKVASASAMDDNGEFNYLQAS-ISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDP 562 (1147)
Q Consensus 484 ~~~I~~~yi~srl~~~~~~~~~~~d~~e~~~~d-~~~~~eqL~~ia~l~R~~~~~t~~~L~~ll~~~~~~l~~~~~~~~~ 562 (1147)
..++... +..||+.|++...+++||+|+ +++ .+.+++.-..+-.+++..++.+..++.+.+.....+... + ..
T Consensus 380 l~~Ll~~-li~k~~yp~d~~~~~~~d~ed-~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~--~--~~ 453 (980)
T 3ibv_A 380 LKSLLEA-IIKKMKYDESQEWDDDPDSEE-EAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAAT--L--SP 453 (980)
T ss_dssp HHHHHHH-HHHTTSCCTTCCCCCCSSSST-HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT--S--CH
T ss_pred HHHHHHH-HHHHccCCCccccccccchhH-HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhc--c--cC
Confidence 4444433 455777776532111111111 111 122333333344455666777777555555544432211 1 11
Q ss_pred chHHHHHHHHHHHHhhHcccCCCCccccCchhhhhhhhhhhhccCCchHhHHHHHHHHHHhhcCcccccccCCHHHHHHH
Q 001132 563 TETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAI 642 (1147)
Q Consensus 563 ~~~~E~L~WLi~i~g~~l~d~~~ge~~~iP~~i~~~~~~~~~~~~~~vv~Li~~ll~l~~~~l~~~~~~~~~Sp~l~~~~ 642 (1147)
...|+++.=.++..|++ ++........+ .++...+-.++.-+.++.+..+.. .-.|++..+.
T Consensus 454 ~~~W~~~EaaL~~l~~i-aE~i~~~~~~~------------~~~~~~lp~l~~ll~~ll~s~i~~-----~~hp~V~~~~ 515 (980)
T 3ibv_A 454 ENSWQLIEFALYETYIF-GEGLRGPDAFF------------NEVDKSPTVLSQILALVTTSQVCR-----HPHPLVQLLY 515 (980)
T ss_dssp HHHHHHHHHHHHHHHHT-TTTCCSGGGTB------------CSSSCCBCHHHHHHHHHHHSSTTT-----CCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH-Hhhcccccccc------------CcccchhHHHHHHHHHHHhCCCCC-----CCCHHHHHHH
Confidence 24577888888888887 43221100000 001111112222233333322211 1368999999
Q ss_pred HHHHHHHHhhhcCccccccccCCCcCCCCCccccchhhHhHHHHhhcCCCCchhHHHHHHHHHHHhcccCCCchhHHHHH
Q 001132 643 VWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELT 722 (1147)
Q Consensus 643 l~fl~~~~~~YL~~~~~~~~~~~~~~~~~~~~~~s~~v~~~l~~~fg~~~~g~~vl~~~l~~i~~~L~~w~~e~~v~~~t 722 (1147)
+|.++||.+ |+. . + .+. .+++.++|=. .-| .-..+..|...+
T Consensus 516 ~~~l~rys~-~~~---~-~------------~~~----l~~~L~~ll~-~~g----------------l~~~~~~V~~~a 557 (980)
T 3ibv_A 516 MEILVRYAS-FFD---Y-E------------SAA----IPALIEYFVG-PRG----------------IHNTNERVRPRA 557 (980)
T ss_dssp HHHHHHTGG-GGG---T-C------------CTT----HHHHHHHHTS-TTT----------------TTCCCTTTHHHH
T ss_pred HHHHHHHHH-HHh---c-C------------chh----HHHHHHHHhc-ccc----------------ccCCChhHHHHH
Confidence 999999975 773 2 2 111 2233333311 001 012234455566
Q ss_pred HHHHHHHHhhcccccchhhccchHHHHHHHhhchhhhhc-cc-------------------chhhHHHHHHHHHHHhcCC
Q 001132 723 CNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLIL-LN-------------------STNQRSLAQTLVLSAYGMR 782 (1147)
Q Consensus 723 ~~~LL~~L~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~-l~-------------------~~~~~~l~~al~~~~~~~~ 782 (1147)
+ .+|..+++. |+..+ .|....+++.+..- .... .| .+.+..+|+++|.+++...
T Consensus 558 ~-~af~~f~~~---~~~~L-~~~~~~il~~l~~l-L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~ 631 (980)
T 3ibv_A 558 W-YLFYRFVKS---IKKQV-VNYTESSLAMLGDL-LNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGN 631 (980)
T ss_dssp H-HHHHHHHHH---TTTTC-SSSHHHHHHHTTGG-GCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSC
T ss_pred H-HHHHHHHHH---hhHHh-hhHHHHHHHHHHHh-hcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCC
Confidence 6 677777664 23222 35666666554210 0000 01 1135569999999987654
Q ss_pred -CCccchHHHHHHHHHHHHHHHHhhCCCcccccccchhHHHHHHHHHHHhhhhhhccCCC--cHHHHHHHHHhhHHHHHH
Q 001132 783 -NSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPR--TQKAIYEMGFSVMNPVLL 859 (1147)
Q Consensus 783 -~~~~~~~~~~~~m~p~~~~~~~l~~~~~~~~~~~~~~ii~~~~~ll~~lrGi~~a~~~~--~~~~l~~~l~~~~~~~~~ 859 (1147)
+++....+++.++.|+...++..++...... .+.. ++..++..+.-++++.... ....+...+.+.++.+..
T Consensus 632 ~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~----~~~~-~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~ 706 (980)
T 3ibv_A 632 LTPEEQALYCDSLINALIGKANAALSSDLSAL----ENII-SVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFL 706 (980)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTSCC------CHHH-HHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhcccCc----cHHH-HHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHH
Confidence 3456788999999999999999986543211 1111 3334444444444443211 111256777778999999
Q ss_pred HHHHhccchHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHhhcCcccee---------EccCC--chhhhhh
Q 001132 860 LLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKV---------DFSSD--SIEAQAI 928 (1147)
Q Consensus 860 ll~~y~~~~~vv~~iLkl~~e~v~n~~~~l~~~~~~~l~~~~~~li~~y~~~~~g~~---------~l~~d--~~~~~~l 928 (1147)
+++.|..+..|...+.++|..++...+..+.+- +=+.+-.++..|.....+.| .|.++ +..++.+
T Consensus 707 ~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~----lp~~i~~ll~~~~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll 782 (980)
T 3ibv_A 707 ILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPK----VPQLISILLNSIDMNELVDVLSFISQLIHIYKDNMMEITNRML 782 (980)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTT----HHHHHHHHHHHCCTTTHHHHHHHHHHHHHHTTTTSHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHH----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888765443321 11222222222322211111 22222 1122333
Q ss_pred ch-hhHhhhhheeeecccccccccchhhHHhHHHHHHHHHhhchhhhh-cC-CHHHHHHHHHHHHhh-ccccCHHHHHHH
Q 001132 929 NI-SQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVA-QL-STEAFAHVLGTLDFG-LHHQDSEIVDMC 1004 (1147)
Q Consensus 929 ~~-~~vv~~~l~~~ipli~~dll~yPkl~~~yf~Ll~~l~e~~~~~l~-~L-~~~~f~~ll~sl~~G-l~~~~~~I~~~~ 1004 (1147)
.. ...++..|.- -+.-|+.+.+-+.+.++||.|+..+..+....+. .- ....|..++.++..+ ..+.|+.+.+.|
T Consensus 783 ~~l~~~if~~l~~-~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a 861 (980)
T 3ibv_A 783 PTLLMRIFSSLSA-APQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSS 861 (980)
T ss_dssp HHHHHHHHHHTTC-----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHH
Confidence 22 2222222221 1222344567788999999999998887644443 22 235688888888854 666899999999
Q ss_pred HHHHHHHHHHHHhhhcCCCccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHhhcCCCc------hHHHHhhhhHHHHh
Q 001132 1005 LRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPD------MVGTAADALFPLIL 1078 (1147)
Q Consensus 1005 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~il~~~~~~~------~~~~~s~~Ll~LI~ 1078 (1147)
+.++.+++......- +-+| . .+++-.+....|...+-.+|+.. .+..++..+-.+..
T Consensus 862 ~~~l~~~v~~~~~~~--~~~g--------------f-~~f~~~~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~ 924 (980)
T 3ibv_A 862 IALVSKMVSLWGGKD--GIAG--------------F-ENFTLSLTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILE 924 (980)
T ss_dssp HHHHHHHHHC---------CC--------------H-HHHHHHHHHHHHHGGGC----------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC--cchH--------------H-HHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 999999998653110 0111 1 12222255555555444444321 22233444444433
Q ss_pred CCHHHHHHHH-HHHHHcCCCchHHHHHHHHHHHhhcCCCCCCCcChhhHHHHHHHHHHHHHHhhh
Q 001132 1079 CEPRLYQRLG-SELIERQANPPFKSRLANALQSLTSSNQLSSTLDRVNYQRFRKNLTNFLVEVRG 1142 (1147)
Q Consensus 1079 ~~~~~f~~l~-~~li~~q~~~~~~~~l~~aF~~L~~~~~~~~~l~~~nr~~F~~nl~~F~~~vr~ 1142 (1147)
...+.|-++. ..++ |.-...+.+.+.|.+-+.+ .....|.+-+..|.+..||
T Consensus 925 ~~g~~~~~~l~~~~l---p~~~~~~~~~~~~~~~l~~---------~~~k~f~~~~~~~~~~~~~ 977 (980)
T 3ibv_A 925 KLGDIYKSYLVTVYF---PTVNFPDVMASEYLQALSN---------LDSRSFKQFFQKFIQALKS 977 (980)
T ss_dssp HHHHHHHHHHHHTTT---TC----CCHHHHHHHC-------------------------CHHHHC
T ss_pred hcCHHHHHHHHHhcC---CcCCCCHHHHHHHHHHHhc---------cchhhHHHHHHHHHHHhhc
Confidence 3334343332 1122 3223344455566555532 2356788888889888775
No 7
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.96 E-value=2e-24 Score=286.16 Aligned_cols=626 Identities=12% Similarity=0.104 Sum_probs=367.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCC-C---HHHHHHHHHhhhcCCCcHHHHHHHHh-cCCchhHHHHHHHHHHHHHhcccCCCC
Q 001132 26 AKLQSIMHSIEIACSSIQMHV-N---PAAAEATILGLCQSPQPYKACQFILE-NSQVANARFQAAAAIRDAAMREWSFLT 100 (1147)
Q Consensus 26 ~~l~~~~~~le~~~~~l~~~~-~---r~~Ae~~L~~f~~~~~~~~~~~~iL~-~S~~~~~~f~a~~~L~~~i~~~W~~l~ 100 (1147)
++++..+++++++++.+|+|. + |++|+++|.+|+++|++|..|..+|. .+.++++++||+++|++.|.++|..++
T Consensus 4 ~~~~~~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~ 83 (1204)
T 3a6p_A 4 DQVNALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMS 83 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSC
T ss_pred hhHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCC
Confidence 455666788999999999973 3 79999999999999999999999997 778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccC---CCchhHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhccCCChhhHHHHHHHH
Q 001132 101 ADEKKSLIGFCLCFVMQHAS---SPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFL 177 (1147)
Q Consensus 101 ~~~~~~lr~~ll~~l~~~~~---~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~l~iL 177 (1147)
+++|..||+++++++.+... +.+++|++|+++++|.|+|++|++ .|++++.++++.+.+ ++.++..++.+|
T Consensus 84 ~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~----~Wp~ll~~L~~~~~~--~~~~~e~~L~iL 157 (1204)
T 3a6p_A 84 RLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ----HWPDMLIELDTLSKQ--GETQTELVMFIL 157 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT----TCTTHHHHHHHHHHT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc----cchHHHHHHHHHhcC--CHHHHHHHHHHH
Confidence 99999999999999887631 147999999999999999999997 789999999999874 677899999999
Q ss_pred HHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhh-------ccchhhhHHHHHHHHHHHHH
Q 001132 178 ESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQII-------ESDAAASEVKACTAALRLLH 250 (1147)
Q Consensus 178 ~~lv~E~s~~~ss~~~~~~~~h~k~~~sF~~~~L~~if~~~~~~L~~~~~~~~-------~~~~~~~~~~l~~~~L~l~~ 250 (1147)
..+++|+...+ .++..++++.+..+++. ++.||.++.++|++.....- +.+.+.....++.++|+++.
T Consensus 158 ~~L~Eev~~~~----~~~~~r~~~l~~~l~~~-~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~ 232 (1204)
T 3a6p_A 158 LRLAEDVVTFQ----TLPPQRRRDIQQTLTQN-MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLA 232 (1204)
T ss_dssp HHHHHHHHTSC----CSCHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccc----chHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHH
Confidence 99999975541 23346777788899987 99999999999876432100 00011234568899999999
Q ss_pred HHcccccccCCCCCcccccccccccccccCCCCccccccccCCcccHHHhhc--cchHHHHHHHHHHhhhcccCCCCCCC
Q 001132 251 QILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALIS--SGHIVWLLNLYSALRQKFSSEGYWLD 328 (1147)
Q Consensus 251 ~~LswdF~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~W~~~l~~--~~~~~llf~ly~~~~~~~~~~~~~~~ 328 (1147)
++++|...+. +.+ ..+++++|.++. +
T Consensus 233 ~~l~Wi~~~~---------------------------------------i~~~~~~ll~~l~~~l~-------------~ 260 (1204)
T 3a6p_A 233 GYIDWVSMSH---------------------------------------ITAENCKLLEILCLLLN-------------E 260 (1204)
T ss_dssp TTTTTSCHHH---------------------------------------HHTTTSHHHHHHHHGGG-------------C
T ss_pred HHHhccCHHH---------------------------------------HHhccchHHHHHHHHcC-------------C
Confidence 9999987543 222 237777774421 2
Q ss_pred chhhHHHHHHHHHHhhcccCccCCCChhhHHHHHHHH----HHhhhhhc--CChhHHHHHHHhCCChhhHHHHHHHHHHH
Q 001132 329 CPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQL----LSGILEWV--DPPDVVAQAIESGKSESEMLDGCRALLSI 402 (1147)
Q Consensus 329 ~~l~~~~l~cL~qLasl~~~~f~~~~~~~r~~yl~~~----l~~i~~il--~~~~~~~~~~~~g~~~~~~~e~cr~L~~l 402 (1147)
++++..|++||+++++.+.+ ++ .+..++..+ +..+.... .++ .+. .+..+++++.++++
T Consensus 261 ~~lr~~A~ecL~~i~s~~~~----~~--~~~~li~~l~~~~l~~l~~~~~~~~~--------~~~-~e~d~e~~k~l~~l 325 (1204)
T 3a6p_A 261 QELQLGAAECLLIAVSRKGK----LE--DRKPLMVLFGDVAMHYILSAAQTADG--------GGL-VEKHYVFLKRLCQV 325 (1204)
T ss_dssp TTTHHHHHHHHHHHHTCCSC----HH--HHGGGGGGGSHHHHHHHHHHHHTCCC--------CSC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCC----hh--hHHHHHHHHhhHHHHHHHHHhhcCCC--------CCC-ccHHHHHHHHHHHH
Confidence 67899999999999997753 11 122222111 11111110 000 111 23344555555555
Q ss_pred HhccChhhhHhhh-hcc--CcchhHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhcccccCCCCCCChh
Q 001132 403 ATVTTPFVFDRLL-KSI--RPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLE 479 (1147)
Q Consensus 403 ~~~~~~~~~~~~~-~~~--~q~~~l~~l~~lt~~~i~~~~~~~~~~~~~~~es~~~lL~~W~~lv~~~~~~~~~~~~p~~ 479 (1147)
...+.- .+..++ +.. .....+ ..+ ...+-.++. .. ..+.....+++|..++..... .....
T Consensus 326 l~~lg~-~l~~l~~~~~~~~~~~~l---~~~-l~~lL~~t~----~~--~~~vs~~~l~fW~~ll~~~~~-----~~~~~ 389 (1204)
T 3a6p_A 326 LCALGN-QLCALLGADSDVETPSNF---GKY-LESFLAFTT----HP--SQFLRSSTQMTWGALFRHEIL-----SRDPL 389 (1204)
T ss_dssp HHHHHH-HHHHHHHTCSSCCCCTTH---HHH-HHHHHHHHT----SS--CHHHHHHHHHHHHHHHSCTTT-----TTCHH
T ss_pred HHHHHH-HHHHHHhccccccChhHH---HHH-HHHHHHHHh----Cc--cHHhHHHHHHHHHHHHhcccc-----cccHH
Confidence 433210 111111 100 000011 111 111222222 11 256677889999999875421 01112
Q ss_pred hhhhHHHHHHHHH--hccccccccccC-------CCCC-cchhhhcchhHHHHHHHHHHHhhhhchhhhHHHHHHHHHHH
Q 001132 480 VRNAAASLFALIV--ESELKVASASAM-------DDNG-EFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSER 549 (1147)
Q Consensus 480 ~~~~~~~I~~~yi--~srl~~~~~~~~-------~~~d-~~e~~~~d~~~~~eqL~~ia~l~R~~~~~t~~~L~~ll~~~ 549 (1147)
...+..++..... ..||+.|+.... +|.| ++|++.+-...+++..+.+-.+++..+..+..++.+.+.+.
T Consensus 390 ~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~ 469 (1204)
T 3a6p_A 390 LLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQ 469 (1204)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 2234445544441 246666653210 0111 11111111345667788888899999999998888887655
Q ss_pred HHHHhccc-C------------C-CCcchHHHHHHHHHHHHhhHcccCCCC-ccccCchhhhhhhhhhhhccCCchHhHH
Q 001132 550 FARLHQGR-G------------M-IDPTETLEELYSLLLITGHVLADEGEG-EIPVVPNAIQTHFVDTIEAAKHPVVLLC 614 (1147)
Q Consensus 550 ~~~l~~~~-~------------~-~~~~~~~E~L~WLi~i~g~~l~d~~~g-e~~~iP~~i~~~~~~~~~~~~~~vv~Li 614 (1147)
........ + . ...+..+....=.+..+++++.+-..+ +.+-+|. .++
T Consensus 470 l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~------------------~~~ 531 (1204)
T 3a6p_A 470 LSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPV------------------NDG 531 (1204)
T ss_dssp HTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCH------------------HHH
T ss_pred HhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccH------------------HHH
Confidence 43210000 0 0 000111111112333444443211100 0010110 123
Q ss_pred HHHHHHHHhhcCcccccccCCHHHHHHHHHHHHHHHhhhcCccccccccCCCcCCCCCccccchhhHhHHHHhhcCCCCc
Q 001132 615 GSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQG 694 (1147)
Q Consensus 615 ~~ll~l~~~~l~~~~~~~~~Sp~l~~~~l~fl~~~~~~YL~~~~~~~~~~~~~~~~~~~~~~s~~v~~~l~~~fg~~~~g 694 (1147)
..++..+-. ++ . -.|.+..+.+.++++|.. |+. . + .++...+...++..+.....+
T Consensus 532 ~~Ll~~ll~-~~--~----~~p~l~~~~i~~l~~l~~-~~~---~-~------------p~~L~~vL~~ll~~l~~~~~~ 587 (1204)
T 3a6p_A 532 IELLQMVLN-FD--T----KDPLILSCVLTNVSALFP-FVT---Y-R------------PEFLPQVFSKLFSSVTFETVE 587 (1204)
T ss_dssp HHHHHHHHH-CC--C----SCHHHHHHHHHHHHHHGG-GGG---T-C------------GGGHHHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHh-CC--C----CChHHHHHHHHHHHHHHH-HHh---c-C------------chHHHHHHHHHHHhhccCCcc
Confidence 445544211 11 1 267788888888888764 552 1 1 011112222222222210000
Q ss_pred hhHHHHHHHHHHHhcccCC-CchhHHHHHHHHHHHHHhhcccccchhhccchHHHHHHHhhchhhhhc-ccchhhHHHHH
Q 001132 695 KPVLDIIVRISMTTLVSYP-GEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLIL-LNSTNQRSLAQ 772 (1147)
Q Consensus 695 ~~vl~~~l~~i~~~L~~w~-~e~~v~~~t~~~LL~~L~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~l~~ 772 (1147)
. .-..++ +..+|...++ ..|..|++... ..| .|.+..|.+.+..--.-.. ++.+.+..+|+
T Consensus 588 ~------------~~~~~~~~~k~vr~~a~-~al~~L~~~~~--~~L--~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~e 650 (1204)
T 3a6p_A 588 E------------SKAPRTRAVRNVRRHAC-SSIIKMCRDYP--QLV--LPNFDMLYNHVKQLLSNELLLTQMEKCALME 650 (1204)
T ss_dssp S------------TTSCCCHHHHHHHHHHH-HHHHHHHHHCH--HHH--GGGHHHHHHHHHHHHHSTTTSCHHHHHHHHH
T ss_pred c------------ccccccHHHHHHHHHHH-HHHHHHHHHhh--HHH--HHHHHHHHHHHHHHHhCcccccHHHHHHHHH
Confidence 0 000001 2235666666 67777876521 222 3666666654321000113 56667788999
Q ss_pred HHHHHHhcCCCCccchHHHHHHHHHHHHHHHH
Q 001132 773 TLVLSAYGMRNSESSNQYVRDLTRHATAYLVE 804 (1147)
Q Consensus 773 al~~~~~~~~~~~~~~~~~~~~m~p~~~~~~~ 804 (1147)
+++.++....+.+....|++.+|.|+.++|.+
T Consensus 651 al~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 651 ALVLISNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 99887433344555667799999999998873
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.79 E-value=1.6e-14 Score=186.55 Aligned_cols=151 Identities=13% Similarity=0.125 Sum_probs=127.2
Q ss_pred CcHHHHHHHHHHHHHHHHHhhCCCC--HHHHHHHHHhhhcCCCcHHHHHHHHh--cCCchhHHHHHHHHHHHHHhcccCC
Q 001132 23 ADLAKLQSIMHSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILE--NSQVANARFQAAAAIRDAAMREWSF 98 (1147)
Q Consensus 23 ~d~~~l~~~~~~le~~~~~l~~~~~--r~~Ae~~L~~f~~~~~~~~~~~~iL~--~S~~~~~~f~a~~~L~~~i~~~W~~ 98 (1147)
+|.+.+++ +.++.+..++|.+ |++||+.|.+++++|+.+..+..|+. .+.++.++++|+..|++.|.++|..
T Consensus 7 ~~~~~~~~----l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~ 82 (852)
T 4fdd_A 7 PDEQGLQQ----ILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQN 82 (852)
T ss_dssp CCHHHHHH----HHHHHHHHTCSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGG
T ss_pred CChhhHHH----HHHHHHHHhCcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCC
Confidence 34556644 4444445566533 89999999999999999999999998 5777899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhccCCChhhHHHHHHHHH
Q 001132 99 LTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLE 178 (1147)
Q Consensus 99 l~~~~~~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~l~iL~ 178 (1147)
+++++|..||+.+++.+. +.++.||+++..+++.|++.+|++ .|++++..+.+.+.+ +++..+..++..|.
T Consensus 83 ~~~~~~~~ik~~ll~~l~----~~~~~vr~~~a~~i~~ia~~~~~~----~wp~ll~~L~~~l~~-~~~~~r~~al~~L~ 153 (852)
T 4fdd_A 83 FPNGVTDFIKSECLNNIG----DSSPLIRATVGILITTIASKGELQ----NWPDLLPKLCSLLDS-EDYNTCEGAFGALQ 153 (852)
T ss_dssp CCHHHHHHHHHHHHTTTT----CSSHHHHHHHHHHHHHHHHHTTTT----TCTTHHHHHHHHHSC-SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHhcCcc----ccHHHHHHHHHHHcC-CCHHHHHHHHHHHH
Confidence 999999999999999753 346799999999999999998765 788999999999875 46678889999999
Q ss_pred HHHhhhCC
Q 001132 179 SLVSEFSP 186 (1147)
Q Consensus 179 ~lv~E~s~ 186 (1147)
.+.+++..
T Consensus 154 ~i~~~~~~ 161 (852)
T 4fdd_A 154 KICEDSAE 161 (852)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhHH
Confidence 99988754
No 9
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=99.65 E-value=2.1e-15 Score=165.28 Aligned_cols=157 Identities=17% Similarity=0.195 Sum_probs=127.0
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhhccccccccc---c-hhhHHHHHHHHHHHhhcCccc------ee-------
Q 001132 854 MNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQ---E-TNIVIDFCTRLLQLYSSHNIG------KV------- 916 (1147)
Q Consensus 854 ~~~~~~ll~~y~~~~~vv~~iLkl~~e~v~n~~~~l~~~---~-~~~l~~~~~~li~~y~~~~~g------~~------- 916 (1147)
..++.+++++|+.+++.+. +.|...+...... + .+.++|++++++++|.++.-- .+
T Consensus 5 ~~iy~dml~lY~~~S~~Is-------~~va~~G~~~~k~~~vr~lR~vKkeiLkLiet~i~~~~d~~~v~~~~ippLl~~ 77 (321)
T 1w9c_A 5 GRIYLDMLNVYKCLSENIS-------AAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDA 77 (321)
T ss_dssp GGGHHHHHHHHHHHHHHHH-------HHHHHHCSGGGGSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4688999999999999887 3333333332221 2 378999999999999876310 00
Q ss_pred EccCC------chhhhhhchhhHhhhhh----------------eeeecccccccccchhhHHhHHHHHHHHHhhchhhh
Q 001132 917 DFSSD------SIEAQAINISQVVFFGL----------------HIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETV 974 (1147)
Q Consensus 917 ~l~~d------~~~~~~l~~~~vv~~~l----------------~~~ipli~~dll~yPkl~~~yf~Ll~~l~e~~~~~l 974 (1147)
++.+| ...++++++..+++.++ .+++.||++|+.+||+||.+||+||+.++++|+..+
T Consensus 78 VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al 157 (321)
T 1w9c_A 78 VLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAF 157 (321)
T ss_dssp HHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHH
T ss_pred HHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHH
Confidence 33333 23467777777776664 599999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhhccccCHHHHHHHHHHHHHHHHHHHh
Q 001132 975 AQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYK 1017 (1147)
Q Consensus 975 ~~L~~~~f~~ll~sl~~Gl~~~~~~I~~~~l~~l~~l~~~~~~ 1017 (1147)
.++|++.|+.+++|+.||+||.+++|+..|++++..++..+.+
T Consensus 158 ~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~ 200 (321)
T 1w9c_A 158 LAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQ 200 (321)
T ss_dssp HHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999988754
No 10
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.59 E-value=4.3e-09 Score=137.40 Aligned_cols=144 Identities=10% Similarity=0.143 Sum_probs=121.3
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHhhhcCCCcHHHHHHHHhcC-CchhHHHHHHHHHHHHHhcccC------CCCHHHHHH
Q 001132 34 SIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENS-QVANARFQAAAAIRDAAMREWS------FLTADEKKS 106 (1147)
Q Consensus 34 ~le~~~~~l~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S-~~~~~~f~a~~~L~~~i~~~W~------~l~~~~~~~ 106 (1147)
++.++....++|.+...||+.|.+++++|+.|..+..|+.+. .+..++++|+..||+.|.++|. .+++++|..
T Consensus 6 ~l~~~L~~~~spd~~~rAe~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ 85 (960)
T 1wa5_C 6 TVAKFLAESVIASTAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVEL 85 (960)
T ss_dssp HHHHHHHHTTSGGGHHHHHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHH
Confidence 344444454555332229999999999999999999999655 4569999999999999999998 899999999
Q ss_pred HHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhCC
Q 001132 107 LIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSP 186 (1147)
Q Consensus 107 lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~l~iL~~lv~E~s~ 186 (1147)
||+.+++.+... ++.|+++++.+++.|++.+|++ +|+++++.+.+.+.+ +++.+..-++.+|..++.++..
T Consensus 86 ik~~ll~~l~~~----~~~ir~~l~~~ia~ia~~d~p~----~Wp~ll~~L~~~l~s-~~~~~~~~aL~~l~~i~~~~~~ 156 (960)
T 1wa5_C 86 IKKEIVPLMISL----PNNLQVQIGEAISSIADSDFPD----RWPTLLSDLASRLSN-DDMVTNKGVLTVAHSIFKRWRP 156 (960)
T ss_dssp HHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHHSTT----TCTTHHHHHHTTCCS-SCTTHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHhC----CHHHHHHHHHHHHHHHHhhCcc----chhHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 999999998763 4899999999999999999986 789999999999875 4667788899999999887653
No 11
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.46 E-value=2.3e-08 Score=128.88 Aligned_cols=192 Identities=12% Similarity=0.078 Sum_probs=143.9
Q ss_pred CcHHHHHHHHHHHHHHHHHh-hCCCC--HHHHHHHHHhhhcC--CCcHHHHHHHHhcC-CchhHHHHHHHHHHHHHhcc-
Q 001132 23 ADLAKLQSIMHSIEIACSSI-QMHVN--PAAAEATILGLCQS--PQPYKACQFILENS-QVANARFQAAAAIRDAAMRE- 95 (1147)
Q Consensus 23 ~d~~~l~~~~~~le~~~~~l-~~~~~--r~~Ae~~L~~f~~~--~~~~~~~~~iL~~S-~~~~~~f~a~~~L~~~i~~~- 95 (1147)
||.+++ .++...+ ++|.+ |++|++.|.+++++ |+.|..+..+|.++ .++.++++|+.+|++.+.++
T Consensus 1 Md~~~l-------~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w 73 (861)
T 2bpt_A 1 MSTAEF-------AQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKD 73 (861)
T ss_dssp CCHHHH-------HHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSS
T ss_pred CCHHHH-------HHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcC
Confidence 666544 4444455 56542 79999999999986 89999999999876 46799999999999998766
Q ss_pred ----------cCC-CCHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhccC
Q 001132 96 ----------WSF-LTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGI 164 (1147)
Q Consensus 96 ----------W~~-l~~~~~~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~~~~~~i~~~~~~~ 164 (1147)
|.. +++++|..||+.+++.+.+ .++.|+++++.+++.|++..|+. ..|++++..+.+.+.+
T Consensus 74 ~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~----~~~~vr~~~~~~l~~i~~~~~p~---~~w~~ll~~L~~~l~~- 145 (861)
T 2bpt_A 74 SVKTQQFAQRWITQVSPEAKNQIKTNALTALVS----IEPRIANAAAQLIAAIADIELPH---GAWPELMKIMVDNTGA- 145 (861)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHHGGG---TCCHHHHHHHHHHTST-
T ss_pred hHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHCC----CchHHHHHHHHHHHHHHHhhCcc---cccHHHHHHHHHHHhc-
Confidence 575 9999999999999998632 35788999999999999999984 2689999999999875
Q ss_pred C-ChhhHHHHHHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHH
Q 001132 165 H-GVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACT 243 (1147)
Q Consensus 165 ~-s~~~~~~~l~iL~~lv~E~s~~~ss~~~~~~~~h~k~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~ 243 (1147)
+ ++..+..++.+|..+.+++... .. .+. .....|+......+... ..+..+..
T Consensus 146 ~~~~~~r~~al~~l~~l~~~~~~~----~~-----------~~~-~~~~~ll~~l~~~l~~~----------~~~~~vr~ 199 (861)
T 2bpt_A 146 EQPENVKRASLLALGYMCESADPQ----SQ-----------ALV-SSSNNILIAIVQGAQST----------ETSKAVRL 199 (861)
T ss_dssp TSCHHHHHHHHHHHHHHHHTSSTT----SS-----------TTG-GGHHHHHHHHHHHHSTT----------CCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCChh----hh-----------HHH-HHHHHHHHHHHHhhcCC----------CCCHHHHH
Confidence 3 6678889999999999987643 10 122 23455555444333110 01345667
Q ss_pred HHHHHHHHHccc
Q 001132 244 AALRLLHQILNW 255 (1147)
Q Consensus 244 ~~L~l~~~~Lsw 255 (1147)
.+++++..++.|
T Consensus 200 ~al~~l~~~~~~ 211 (861)
T 2bpt_A 200 AALNALADSLIF 211 (861)
T ss_dssp HHHHHHHHHGGG
T ss_pred HHHHHHHHHHHH
Confidence 888888888755
No 12
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.11 E-value=4.3e-05 Score=98.36 Aligned_cols=183 Identities=12% Similarity=0.074 Sum_probs=134.3
Q ss_pred HHHHHHhhCCCC--HHHHHHHHHhhhcC--CCcHHHHHHHHhcC-CchhHHHHHHHHHHHHHh-----------cccCCC
Q 001132 36 EIACSSIQMHVN--PAAAEATILGLCQS--PQPYKACQFILENS-QVANARFQAAAAIRDAAM-----------REWSFL 99 (1147)
Q Consensus 36 e~~~~~l~~~~~--r~~Ae~~L~~f~~~--~~~~~~~~~iL~~S-~~~~~~f~a~~~L~~~i~-----------~~W~~l 99 (1147)
.++.+.++++.+ |++|++.|.+++++ |+.|..+..+|.+. .++.++.+|+.+|++.+. ++|..+
T Consensus 4 ~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l 83 (876)
T 1qgr_A 4 ITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAI 83 (876)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTS
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccC
Confidence 344444566532 79999999999987 88899998988776 467999999999999874 679999
Q ss_pred CHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhccCC--ChhhHHHHHHHH
Q 001132 100 TADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIH--GVDTQFIGINFL 177 (1147)
Q Consensus 100 ~~~~~~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~~~~~~i~~~~~~~~--s~~~~~~~l~iL 177 (1147)
+++.|..||+.+++.+.+. +..+ ++++++++.|++..|+. .+|+.++..+.+.+.. + ++..+..++..|
T Consensus 84 ~~~~~~~ik~~ll~~l~~~----~~~~-~~~~~~l~~i~~~~~~~---~~w~~ll~~l~~~l~~-~~~~~~~r~~al~~l 154 (876)
T 1qgr_A 84 DANARREVKNYVLHTLGTE----TYRP-SSASQCVAGIACAEIPV---NQWPELIPQLVANVTN-PNSTEHMKESTLEAI 154 (876)
T ss_dssp CHHHHHHHHHHHHHHTTTC----CSSS-CHHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHC-TTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCC----cHHH-HHHHHHHHHHHHhhCcc---cccHHHHHHHHHHHhC-CCCCHHHHHHHHHHH
Confidence 9999999999999976432 3445 89999999999998873 2688899999998875 4 567788999999
Q ss_pred HHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHccc
Q 001132 178 ESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNW 255 (1147)
Q Consensus 178 ~~lv~E~s~~~ss~~~~~~~~h~k~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw 255 (1147)
..+++++... .|.. .+..++......+.. .+ +...+...+++++..++.+
T Consensus 155 ~~l~~~~~~~-----------------~~~~-~~~~ll~~l~~~l~~-------~~---~~~~vr~~a~~~l~~~~~~ 204 (876)
T 1qgr_A 155 GYICQDIDPE-----------------QLQD-KSNEILTAIIQGMRK-------EE---PSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp HHHHHHSCHH-----------------HHGG-GHHHHHHHHHHHHST-------TC---SCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHhcCHh-----------------hHHh-HHHHHHHHHHHhhcC-------CC---CCHHHHHHHHHHHHHHHHH
Confidence 9999876421 1332 355555544443311 00 0234556788888877754
No 13
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.52 E-value=1e-06 Score=104.40 Aligned_cols=184 Identities=13% Similarity=0.066 Sum_probs=138.2
Q ss_pred HHHHHHHhhCCCC--HHHHHHHHHhhhc--CCCcHHHHHHHHhcCC-chhHHHHHHHHHHHHHhcc-----------cCC
Q 001132 35 IEIACSSIQMHVN--PAAAEATILGLCQ--SPQPYKACQFILENSQ-VANARFQAAAAIRDAAMRE-----------WSF 98 (1147)
Q Consensus 35 le~~~~~l~~~~~--r~~Ae~~L~~f~~--~~~~~~~~~~iL~~S~-~~~~~f~a~~~L~~~i~~~-----------W~~ 98 (1147)
+.++...+++|.+ |++||+.|.++++ .|+.|..+..+|.+++ ++.++.+|+.+|++.+.++ |..
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~ 82 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhc
Confidence 4455556666543 7999999999998 5889999999998875 6799999999999999876 688
Q ss_pred CCHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhccCC--ChhhHHHHHHH
Q 001132 99 LTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIH--GVDTQFIGINF 176 (1147)
Q Consensus 99 l~~~~~~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~~~~~~i~~~~~~~~--s~~~~~~~l~i 176 (1147)
+++++|..||+.+++.+... ++.+ ++++.+++.|.+..|++ ..|+.++..+.+.+.. + ++..+..++.+
T Consensus 83 l~~~~~~~ik~~ll~~l~~~----~~~v-~~~~~~i~~ia~~~~~~---~~w~~ll~~L~~~l~~-~~~~~~~r~~al~~ 153 (462)
T 1ibr_B 83 IDANARREVKNYVLQTLGTE----TYRP-SSASQCVAGIACAEIPV---NQWPELIPQLVANVTN-PNSTEHMKESTLEA 153 (462)
T ss_dssp SCHHHHHHHHHHHHHHTTCC----CSSS-CSHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHC-TTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCC----Cchh-hHHHHHHHHHHHHhccc---cccHHHHHHHHHHhcc-CCCCHHHHHHHHHH
Confidence 99999999999999976432 3456 89999999999999885 2688999999999875 4 66788899999
Q ss_pred HHHHHhhhCCCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHccc
Q 001132 177 LESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNW 255 (1147)
Q Consensus 177 L~~lv~E~s~~~ss~~~~~~~~h~k~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw 255 (1147)
|..+++++... . + ...+..++......|... .++..+-..+++++.+++.+
T Consensus 154 l~~l~~~~~~~----~-------------~-~~~~~~ll~~l~~~l~~~----------~~~~~vr~~a~~~l~~~~~~ 204 (462)
T 1ibr_B 154 IGYICQDIDPE----Q-------------L-QDKSNEILTAIIQGMRKE----------EPSNNVKLAATNALLNSLEF 204 (462)
T ss_dssp HHHHHHHSCGG----G-------------T-GGGHHHHHHHHHHHHSTT----------CCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCch----h-------------h-HhHHHHHHHHHHHHhCCC----------CCCHHHHHHHHHHHHHHHHH
Confidence 99999987432 0 1 123445555544444210 00234567788888887743
No 14
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=78.40 E-value=24 Score=46.64 Aligned_cols=143 Identities=9% Similarity=0.027 Sum_probs=93.6
Q ss_pred HHHHHHHhhCCCC--HHHHHHHHHhhhcCC------Cc----HHHHHHHHhcCCchhHHHHHHHHHHHHHhcccCCCCHH
Q 001132 35 IEIACSSIQMHVN--PAAAEATILGLCQSP------QP----YKACQFILENSQVANARFQAAAAIRDAAMREWSFLTAD 102 (1147)
Q Consensus 35 le~~~~~l~~~~~--r~~Ae~~L~~f~~~~------~~----~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~ 102 (1147)
+.++.+.+.++.+ |.+|.+-|.+.-+.+ .. ...+...|. ++++.++..|+.+|...+.. ++++
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~----~~~~ 82 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSK----VKEY 82 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTT----SCHH
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHh----CCHH
Confidence 3344444455432 788888777665433 11 233334444 67889999999999988754 6776
Q ss_pred HHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhccCC-----CCCchhhHHHHHHHHhccCCChhhHHHHHHHH
Q 001132 103 EKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDF-----TSSDKEAFFSQVHQAVLGIHGVDTQFIGINFL 177 (1147)
Q Consensus 103 ~~~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~-----~~~~~~~~~~~i~~~~~~~~s~~~~~~~l~iL 177 (1147)
.+..+...+++-+ .+....||...+.+++.++..-..+. ....|+.++..+.+.+....++....-++.+|
T Consensus 83 ~~~~i~~~Ll~~l----~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l 158 (1230)
T 1u6g_C 83 QVETIVDTLCTNM----LSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIM 158 (1230)
T ss_dssp HHHHHHHHHHHHT----TCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 6666666666653 23456789999999999987655431 01136677777777776224567788999999
Q ss_pred HHHHhhhCC
Q 001132 178 ESLVSEFSP 186 (1147)
Q Consensus 178 ~~lv~E~s~ 186 (1147)
..+++.+..
T Consensus 159 ~~~~~~~~~ 167 (1230)
T 1u6g_C 159 ADMLSRQGG 167 (1230)
T ss_dssp HHHHHHTCS
T ss_pred HHHHHHhHh
Confidence 999987754
No 15
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=69.83 E-value=53 Score=33.60 Aligned_cols=211 Identities=13% Similarity=0.096 Sum_probs=119.4
Q ss_pred HHHHHHHHHhhhcCC----------CcHHHHHHHHhcCCchhHHHHHHHHHHHHHhcccCCCCHHHHHHHHH-HHHHHHH
Q 001132 48 PAAAEATILGLCQSP----------QPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIG-FCLCFVM 116 (1147)
Q Consensus 48 r~~Ae~~L~~f~~~~----------~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~~~~lr~-~ll~~l~ 116 (1147)
+..|-..|.++.... ...+....+|+. .++.++..|+.+|.+..... ++.+..+.+ -.+..+.
T Consensus 19 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~-----~~~~~~~~~~~~i~~l~ 92 (252)
T 4hxt_A 19 QKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGP-----DEAIKAIVDAGGVEVLV 92 (252)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCC-----hHHHHHHHHCCCHHHHH
Confidence 455666666665433 456666777765 45899999999999886552 444444322 2344444
Q ss_pred hccCCCchhHHHHHHHHHHHHHHhhccCCCCCch-----hhHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhCCCCCCC
Q 001132 117 QHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDK-----EAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSA 191 (1147)
Q Consensus 117 ~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~-----~~~~~~i~~~~~~~~s~~~~~~~l~iL~~lv~E~s~~~ss~ 191 (1147)
+.-.+...-++...+.+++.+.... +..+ ...++.+++.+.. +++..+..++..|..+...-
T Consensus 93 ~ll~~~~~~v~~~a~~~L~~l~~~~-----~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~------- 159 (252)
T 4hxt_A 93 KLLTSTDSEVQKEAARALANIASGP-----DEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGP------- 159 (252)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSC-------
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCC-----HHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCC-------
Confidence 4322345778888888888776311 0011 1356677777764 45667778888887765321
Q ss_pred CCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcccccccCCCCCccccccc
Q 001132 192 MGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVF 271 (1147)
Q Consensus 192 ~~~~~~~h~k~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~~~~~d~~~~~~~~ 271 (1147)
.. ..+.-.+...++.+.+ .|. . ++..+...++.++.++...+.
T Consensus 160 -----~~--~~~~~~~~~~i~~L~~----ll~--------~----~~~~v~~~a~~~L~~l~~~~~-------------- 202 (252)
T 4hxt_A 160 -----DE--AIKAIVDAGGVEVLVK----LLT--------S----TDSEVQKEAARALANIASGPT-------------- 202 (252)
T ss_dssp -----HH--HHHHHHHTTHHHHHHH----HTT--------C----SCHHHHHHHHHHHHHHTTSBH--------------
T ss_pred -----HH--HHHHHHHCcCHHHHHH----HHC--------C----CCHHHHHHHHHHHHHHHcCCH--------------
Confidence 01 1111122233333322 221 1 134566777777776663211
Q ss_pred ccccccccCCCCccccccccCCcccHHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhhHHHHHHHHHHhhcccC
Q 001132 272 SAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGT 348 (1147)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~~~llf~ly~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl~~~ 348 (1147)
.=+..+.+.+.+..+.++.. + .++.+...++.+|..|+.-...
T Consensus 203 -----------------------~~~~~l~~~~~i~~L~~ll~---~--------~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 203 -----------------------SAIKAIVDAGGVEVLQKLLT---S--------TDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp -----------------------HHHHHHHHTTHHHHHHHGGG---C--------SCHHHHHHHHHHHHHHHHTCBC
T ss_pred -----------------------HHHHHHHHCCCHHHHHHHHC---C--------CcHHHHHHHHHHHHHHHcCCCc
Confidence 01224566777777766532 1 2367889999999998875543
No 16
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=65.44 E-value=2.6e+02 Score=34.51 Aligned_cols=113 Identities=9% Similarity=0.036 Sum_probs=68.6
Q ss_pred hhHHhHHHHHHHHHhhchhhhhcCCHHHHHHHHHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhcc
Q 001132 954 KLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGI 1033 (1147)
Q Consensus 954 kl~~~yf~Ll~~l~e~~~~~l~~L~~~~f~~ll~sl~~Gl~~~~~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 1033 (1147)
.++...+..+..+++.....+. +.+..++..+..++++.+.++...++.++..++..+.. ..
T Consensus 613 ~v~~~~~~~l~~l~~~~~~~~~----~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~-------~~------- 674 (861)
T 2bpt_A 613 FIEDDVFYAISALAASLGKGFE----KYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEE-------DF------- 674 (861)
T ss_dssp GTHHHHHHHHHHHHHHHGGGGH----HHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGG-------GG-------
T ss_pred cHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhch-------hc-------
Confidence 6788888888888876544332 34566777777778778888988888888887764421 00
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhhcCCCchHHHHhhhhHHHHhCCHHHHHHHHHHHH
Q 001132 1034 NNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELI 1092 (1147)
Q Consensus 1034 ~~~~~~~~~~~l~~~l~~ll~~il~~~~~~~~~~~~s~~Ll~LI~~~~~~f~~l~~~li 1092 (1147)
...+..++..+++.+--.+.+.+.-..+..++-.++...++.|..+...++
T Consensus 675 --------~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l 725 (861)
T 2bpt_A 675 --------RRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIM 725 (861)
T ss_dssp --------HHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred --------cchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 133455555555544222233455445566665555555555555444443
No 17
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=64.64 E-value=46 Score=37.09 Aligned_cols=111 Identities=12% Similarity=0.046 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHhhhcCCCcH-HHHHH----HHhcCCchhHHHHHHHHHHHHHhcccCCCCHHH
Q 001132 29 QSIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPY-KACQF----ILENSQVANARFQAAAAIRDAAMREWSFLTADE 103 (1147)
Q Consensus 29 ~~~~~~le~~~~~l~~~~~r~~Ae~~L~~f~~~~~~~-~~~~~----iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~ 103 (1147)
+.+...+..+.+.++.+.|.++|.+-+.++.. |.-. +.+.. .|++++ .-.+=..+..|..+... +.++.++
T Consensus 214 eelkkki~~lL~EY~~s~D~~EA~~ci~EL~~-p~fhhe~V~~av~~aLE~~~-~~~re~~~~LL~~L~~~--glls~~q 289 (358)
T 3eiq_C 214 NHLVKEIDMLLKEYLLSGDISEAEHCLKELEV-PHFHHELVYEAIVMVLESTG-ESAFKMILDLLKSLWKS--STITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC-TTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHT--TCSCHHH
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHccC-CcchHHHHHHHHHHHHccCc-hHHHHHHHHHHHHHHHC--CCCCHHH
Confidence 44456777778888888889999999999985 4432 33333 346543 33445555777777766 5687766
Q ss_pred HHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhccC
Q 001132 104 KKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLD 144 (1147)
Q Consensus 104 ~~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~ 144 (1147)
-..=-.-+++.+-...-+ -+.+...+.+.+++.++.+|..
T Consensus 290 ~~~Gf~~vl~~ldDl~lD-iP~A~~~la~~varai~~g~l~ 329 (358)
T 3eiq_C 290 MKRGYERIYNEIPDINLD-VPHSYSVLERFVEECFQAGIIS 329 (358)
T ss_dssp HHHHHHHHHHHHHHHHHH-CTTHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHhccHhhcc-cccHHHHHHHHHHHHHHCCCCC
Confidence 443333344443332211 2566778888999999999986
No 18
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=59.65 E-value=52 Score=35.80 Aligned_cols=111 Identities=11% Similarity=0.052 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHhhhcCCCcH-HHHH----HHHhcCCchhHHHHHHHHHHHHHhcccCCCCHHH
Q 001132 29 QSIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPY-KACQ----FILENSQVANARFQAAAAIRDAAMREWSFLTADE 103 (1147)
Q Consensus 29 ~~~~~~le~~~~~l~~~~~r~~Ae~~L~~f~~~~~~~-~~~~----~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~ 103 (1147)
+.+...+..+...++++.|-++|.+-+.++.. |.-. +.+. ..||++ +...+=..+..|..+... +.++.++
T Consensus 163 eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~-p~f~~e~V~~ai~~alE~~-~~~~re~~~~LL~~L~~~--~~ls~~q 238 (307)
T 2zu6_B 163 NHLVKEIDMLLKEYLLSGDISEAEHCLKELEV-PHFHHELVYEAIIMVLEST-GESTFKMILDLLKSLWKS--STITVDQ 238 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC-GGGHHHHHHHHHHHHHTCC-SSHHHHHHHHHHHHHHHH--CSSCHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCC-CcchHHHHHHHHHHHHccC-ChHHHHHHHHHHHHHHHC--CCCCHHH
Confidence 34456677778888888889999999999985 4332 3333 344554 334555666777777755 4688776
Q ss_pred HHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhccC
Q 001132 104 KKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLD 144 (1147)
Q Consensus 104 ~~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~ 144 (1147)
-..=-.-+++.+-...-+ -+.+.+.+...+++.+..+|..
T Consensus 239 ~~~Gf~~vl~~l~Dl~lD-iP~A~~~la~~v~~ai~~g~l~ 278 (307)
T 2zu6_B 239 MKRGYERIYNEIPDINLD-VPHSYSVLERFVEECFQAGIIS 278 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CTTHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHhccHhhcc-cccHHHHHHHHHHHHHHCCCCC
Confidence 543333333333322111 2566778888899999999986
No 19
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=55.78 E-value=2e+02 Score=30.16 Aligned_cols=107 Identities=14% Similarity=-0.011 Sum_probs=67.8
Q ss_pred cCCchhHHHHHHHHHHHHHhcccCC-CCHHHHHHHHHHHHHHHHhcc-CCCchhHHHHHHHHHHHHHHhhccCCCCCchh
Q 001132 74 NSQVANARFQAAAAIRDAAMREWSF-LTADEKKSLIGFCLCFVMQHA-SSPEGYVQAKISSVAAQLMKRGWLDFTSSDKE 151 (1147)
Q Consensus 74 ~S~~~~~~f~a~~~L~~~i~~~W~~-l~~~~~~~lr~~ll~~l~~~~-~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~ 151 (1147)
.-+|..|+--|+.++...+..-=.. .........-..++..++.++ .+..+-++.....++..++....+. .
T Consensus 65 ~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~------~ 138 (278)
T 4ffb_C 65 TDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI------T 138 (278)
T ss_dssp TCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS------H
T ss_pred ccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH------H
Confidence 4677888888999998877642000 011122233445566677663 2344667777777776666554432 2
Q ss_pred hHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhCCC
Q 001132 152 AFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPS 187 (1147)
Q Consensus 152 ~~~~~i~~~~~~~~s~~~~~~~l~iL~~lv~E~s~~ 187 (1147)
.+++.+...+.. .+|....-.+.+|..++.+|+..
T Consensus 139 ~~~e~l~~~l~~-Knpkv~~~~l~~l~~~l~~fg~~ 173 (278)
T 4ffb_C 139 QSVELVIPFFEK-KLPKLIAAAANCVYELMAAFGLT 173 (278)
T ss_dssp HHHHHHGGGGGC-SCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHHhCCC
Confidence 456666666653 57888889999999999999865
No 20
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=53.91 E-value=1.4e+02 Score=32.16 Aligned_cols=126 Identities=16% Similarity=0.099 Sum_probs=76.7
Q ss_pred HHHHHHHHHhhhcCC---------CcHHHHHH-HHhcCCchhHHHHHHHHHHHHHhcccCCCCHHHHHHHH-----HHHH
Q 001132 48 PAAAEATILGLCQSP---------QPYKACQF-ILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLI-----GFCL 112 (1147)
Q Consensus 48 r~~Ae~~L~~f~~~~---------~~~~~~~~-iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~~~~lr-----~~ll 112 (1147)
+..|-..|.++-++. ..++.+.. +|. |.++.++-.|+.+|.+.+... +..+..+. ..|+
T Consensus 57 k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~-s~~~~vr~~Aa~~Lg~ia~~n-----~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 57 REGALELLADLCENMDNAADFCQLSGMHLLVGRYLE-AGAAGLRWRAAQLIGTCSQNV-----AAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTT-CSSHHHHHHHHHHHHHHHTTC-----HHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCC-----HHHHHHHHHCCCHHHHH
Confidence 445666666666543 34565666 665 678899999999999998763 44444333 3555
Q ss_pred HHHHhccCCCchhHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhccCCChhhHHHHHHHHHHHHhh
Q 001132 113 CFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSE 183 (1147)
Q Consensus 113 ~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~l~iL~~lv~E 183 (1147)
..+... .+.-|+.+.+.+++.+++..=.....-.....+.-++..+.. +++..+.-++..|+.+...
T Consensus 131 ~LL~~~---~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~-~d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 131 RLLDRD---ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ-QVQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp HHHHHC---SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHH
T ss_pred HHHccC---CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhC
Confidence 554332 246788888888888874211000000001345556666654 4667777888888888765
No 21
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=51.50 E-value=84 Score=31.17 Aligned_cols=109 Identities=13% Similarity=0.049 Sum_probs=64.1
Q ss_pred CCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhcccCCCCHHHHHHHHH-HHHHHHHhccCCCchhHHHHHHHHHHHHHHh
Q 001132 62 PQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIG-FCLCFVMQHASSPEGYVQAKISSVAAQLMKR 140 (1147)
Q Consensus 62 ~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~~~~lr~-~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~ 140 (1147)
+..++....+|. ++++.++..|+.+|.+..... ++.+..+.+ -.+..+.+.-.+....++...+.++..+...
T Consensus 11 ~~~~~~l~~LL~-s~~~~v~~~a~~~L~~l~~~~-----~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 84 (210)
T 4db6_A 11 GSELPQMVQQLN-SPDQQELQSALRKLSQIASGG-----NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 84 (210)
T ss_dssp --CHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSC-----HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred cchhHHHHHHhc-CCCHHHHHHHHHHHHHHHcCC-----HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 445666667774 567899999999999987443 444443332 2333333322223567888888888777521
Q ss_pred hccCCCCCch-----hhHHHHHHHHhccCCChhhHHHHHHHHHHHHh
Q 001132 141 GWLDFTSSDK-----EAFFSQVHQAVLGIHGVDTQFIGINFLESLVS 182 (1147)
Q Consensus 141 ~W~~~~~~~~-----~~~~~~i~~~~~~~~s~~~~~~~l~iL~~lv~ 182 (1147)
. +..+ ...++.+++.+.. +++..+..++..|..+..
T Consensus 85 ~-----~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~ 125 (210)
T 4db6_A 85 G-----NEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIAS 125 (210)
T ss_dssp C-----HHHHHHHHHTTCHHHHHHHTTC-SCHHHHHHHHHHHHHHTT
T ss_pred C-----cHHHHHHHHCCCHHHHHHHHcC-CcHHHHHHHHHHHHHHHc
Confidence 1 0011 1245566677764 456667777877777653
No 22
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=51.43 E-value=98 Score=31.67 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=67.3
Q ss_pred CCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH-HHHHHHhccCCCchhHHHHHHHHHHHHHHh
Q 001132 62 PQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGF-CLCFVMQHASSPEGYVQAKISSVAAQLMKR 140 (1147)
Q Consensus 62 ~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~~~~lr~~-ll~~l~~~~~~~~~~v~~~l~~~la~i~K~ 140 (1147)
....+....+|+.++ +.++..|+.+|.+..... ++.+..+.+. .+..+.+.-.+....++...+.++..+...
T Consensus 53 ~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~-----~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 126 (252)
T 4db8_A 53 AGALPALVQLLSSPN-EQILQEALWALSNIASGG-----NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 126 (252)
T ss_dssp TTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred cCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCC-----HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Confidence 355666777776554 899999999999987643 4555544332 444444432234577888888888777521
Q ss_pred hccCCCCCchhhHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 001132 141 GWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLV 181 (1147)
Q Consensus 141 ~W~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~l~iL~~lv 181 (1147)
.-.....-.....++.+++.+.. +++..+..++..|..+.
T Consensus 127 ~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~ 166 (252)
T 4db8_A 127 GNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIA 166 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHH
Confidence 10000000011356677777764 45666777887777765
No 23
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=50.13 E-value=1.6e+02 Score=28.17 Aligned_cols=97 Identities=13% Similarity=0.049 Sum_probs=57.4
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHhhhcCCCcHHHHHHHH---hcCCchhHHHHHHHHHHHHHhcccCCCCHHHHHHH--H
Q 001132 34 SIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFIL---ENSQVANARFQAAAAIRDAAMREWSFLTADEKKSL--I 108 (1147)
Q Consensus 34 ~le~~~~~l~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL---~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~~~~l--r 108 (1147)
.+|+|+...+..+|-...-++-...+..++.-..+-..| =++.|+.++++|+++|..++.+. +..-..++ |
T Consensus 15 ~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNC----G~~fh~eias~ 90 (149)
T 3g2s_A 15 RINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSC----GKRFHDEVGKF 90 (149)
T ss_dssp HHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHC----CHHHHHHHTSH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc----CHHHHHHHhhH
Confidence 377776555555565666666666676665444433333 13789999999999999999986 22222222 4
Q ss_pred HHHHHHH---Hhc--cCCCchhHHHHHHHHH
Q 001132 109 GFCLCFV---MQH--ASSPEGYVQAKISSVA 134 (1147)
Q Consensus 109 ~~ll~~l---~~~--~~~~~~~v~~~l~~~l 134 (1147)
.|+-+++ ..+ +...+.-|++++..++
T Consensus 91 ~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li 121 (149)
T 3g2s_A 91 RFLNELIKVVSPKYLGSRTSEKVKNKILELL 121 (149)
T ss_dssp HHHHHHHHHHCTTTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccccCCCCCHHHHHHHHHHH
Confidence 4444422 111 1124677888776544
No 24
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=46.54 E-value=1.3e+02 Score=29.79 Aligned_cols=108 Identities=14% Similarity=0.085 Sum_probs=66.6
Q ss_pred CcHHHHHHHHhcCCchhHHHHHHHHHHHHHhcccCCCCHHHHHHHHH-HHHHHHHhccCCCchhHHHHHHHHHHHHHHhh
Q 001132 63 QPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIG-FCLCFVMQHASSPEGYVQAKISSVAAQLMKRG 141 (1147)
Q Consensus 63 ~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~~~~lr~-~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~ 141 (1147)
..++....+|..+ ++.++-.|+.+|.+..... ++.+..+.+ -.+..+++.-.+...-++...+.++..+....
T Consensus 54 g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~-----~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 127 (210)
T 4db6_A 54 GALPALVQLLSSP-NEQILQEALWALSNIASGG-----NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 127 (210)
T ss_dssp THHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCC-----cHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC
Confidence 4566667777654 7899999999999986543 455444432 12233333222235778888888888876311
Q ss_pred ccCCCCCc-----hhhHHHHHHHHhccCCChhhHHHHHHHHHHHHh
Q 001132 142 WLDFTSSD-----KEAFFSQVHQAVLGIHGVDTQFIGINFLESLVS 182 (1147)
Q Consensus 142 W~~~~~~~-----~~~~~~~i~~~~~~~~s~~~~~~~l~iL~~lv~ 182 (1147)
+.. ....++.+++.+.. +++..+..++..|..+..
T Consensus 128 -----~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 128 -----NEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIAS 167 (210)
T ss_dssp -----HHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHHc
Confidence 001 12356677777764 466677888888888763
No 25
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=44.49 E-value=5.4e+02 Score=31.78 Aligned_cols=135 Identities=10% Similarity=0.142 Sum_probs=74.5
Q ss_pred chhhHHhHHHHHHHHHhhchhhhhcCCHHHHHHHHHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhh
Q 001132 952 YPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAA 1031 (1147)
Q Consensus 952 yPkl~~~yf~Ll~~l~e~~~~~l~~L~~~~f~~ll~sl~~Gl~~~~~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~ 1031 (1147)
+|+.++.--..+..+++.....+...-...+..++..+.. ......+...++.+|..|...+-...
T Consensus 683 ~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~--~~~~~~~~~~a~~~igrl~~~~~~~~------------ 748 (852)
T 4fdd_A 683 FISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINR--PNTPKTLLENTAITIGRLGYVCPQEV------------ 748 (852)
T ss_dssp SHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTC--SSCCHHHHHHHHHHHHHHHHHCHHHH------------
T ss_pred chHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCC--CCCCchHHHHHHHHHHHHHHhCHHHh------------
Confidence 4556665555565555544333322223333344333321 12245788889999998887532211
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHHhhcCCCchHHHHhhhhHHHHhCCHHH----HHHHHHHHHHcCCCchHHHHHHHH
Q 001132 1032 GINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRL----YQRLGSELIERQANPPFKSRLANA 1107 (1147)
Q Consensus 1032 ~~~~~~~~~~~~~l~~~l~~ll~~il~~~~~~~~~~~~s~~Ll~LI~~~~~~----f~~l~~~li~~q~~~~~~~~l~~a 1107 (1147)
...+++++...++.+ -..-+.+--.++-+.|..+|..+|+. |-.+...+. +-.++ ++.+.+.
T Consensus 749 ----------~~~l~~~~~~~~~~l-~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~-~~~~~--~~~l~~~ 814 (852)
T 4fdd_A 749 ----------APMLQQFIRPWCTSL-RNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVA-SWINP--KDDLRDM 814 (852)
T ss_dssp ----------GGGHHHHHHHHHHHH-HTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHH-TCSSC--CHHHHHH
T ss_pred ----------CccHHHHHHHHHHHh-ccccccHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHH-hcCCC--CHHHHHH
Confidence 112445555555533 22223334557889999999999974 334444443 33333 5678889
Q ss_pred HHHhhcC
Q 001132 1108 LQSLTSS 1114 (1147)
Q Consensus 1108 F~~L~~~ 1114 (1147)
|.+++.+
T Consensus 815 ~~~~l~~ 821 (852)
T 4fdd_A 815 FCKILHG 821 (852)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888854
No 26
>1wiz_A DNA-binding protein SATB2; helix bundle, KIAA1034 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=40.35 E-value=12 Score=33.43 Aligned_cols=80 Identities=14% Similarity=0.187 Sum_probs=42.0
Q ss_pred CCCCCCCCCCCCCC--cH--HHHHHHHHHHHHHHHHhhCCCCHHHHHHH-------HHhhhcCC-CcHHHHHHHHhcCCc
Q 001132 10 GGGGDDGGGGGGPA--DL--AKLQSIMHSIEIACSSIQMHVNPAAAEAT-------ILGLCQSP-QPYKACQFILENSQV 77 (1147)
Q Consensus 10 ~~~~~~~~~~~~~~--d~--~~l~~~~~~le~~~~~l~~~~~r~~Ae~~-------L~~f~~~~-~~~~~~~~iL~~S~~ 77 (1147)
|+||..|+|+-+.. |+ .--+.+.+.|.. -+. +.+--|+.+ |-++-+.| .+|..++. ...
T Consensus 1 ~~~~~~~~~~~~~~~~~iTk~I~~~Ik~~Lk~----~~i-sQ~~FA~~VL~rsQgtLs~lLr~P~kPW~~L~~----Gre 71 (101)
T 1wiz_A 1 GSSGSSGKPEPTNSSVEVSPDIYQQVRDELKR----ASV-SQAVFARVAFNRTQGLLSEILRKEEDPRTASQS----LLV 71 (101)
T ss_dssp CCCCCCCCCCCCCCSCCCCTTHHHHHHHHHHH----HTC-CHHHHHHHHHSCCHHHHHHHHHTCCCTTTCCHH----HHH
T ss_pred CCCCCCCCCCcccchhHhhHHHHHHHHHHHHH----cCC-CHHHHHHHHHHHhhhHHHHHHcCCCCCHHHHHH----HHH
Confidence 56777777764432 32 112223333332 122 233445554 44555677 47766533 233
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCHHHHHHHHH
Q 001132 78 ANARFQAAAAIRDAAMREWSFLTADEKKSLIG 109 (1147)
Q Consensus 78 ~~~~f~a~~~L~~~i~~~W~~l~~~~~~~lr~ 109 (1147)
+|.++ +.|=.+|.++|.+|-+
T Consensus 72 ~f~RM-----------~nWL~l~e~eR~eIl~ 92 (101)
T 1wiz_A 72 NLRAM-----------QNFLNLPEVERDRIYQ 92 (101)
T ss_dssp HHHHH-----------HHHTTSCHHHHHHHHH
T ss_pred HHHHH-----------HHHhcCCHHHHHHHHH
Confidence 44443 4788899999988543
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=39.60 E-value=2.2e+02 Score=28.66 Aligned_cols=106 Identities=12% Similarity=0.098 Sum_probs=64.8
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHhcccCCCCHHHHHHHH-HHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhcc
Q 001132 65 YKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLI-GFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWL 143 (1147)
Q Consensus 65 ~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~~~~lr-~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~ 143 (1147)
.+....+|..++ +.++..|+.+|.+..... ++.+..+. .-.+..+.+.-.+...-++...+.++..+....
T Consensus 4 i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~-----~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-- 75 (252)
T 4hxt_A 4 VEKLVKLLTSTD-SETQKEAARDLAEIASGP-----ASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-- 75 (252)
T ss_dssp HHHHHHHTTCSC-HHHHHHHHHHHHHHHTSC-----HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--
T ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHHhcCC-----cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC--
Confidence 344555665544 889999999999997764 33443332 234444444322335778888888888776421
Q ss_pred CCCCCch-----hhHHHHHHHHhccCCChhhHHHHHHHHHHHHh
Q 001132 144 DFTSSDK-----EAFFSQVHQAVLGIHGVDTQFIGINFLESLVS 182 (1147)
Q Consensus 144 ~~~~~~~-----~~~~~~i~~~~~~~~s~~~~~~~l~iL~~lv~ 182 (1147)
+..+ ...++.+++.+.. +++..+..++..|..+..
T Consensus 76 ---~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~ 115 (252)
T 4hxt_A 76 ---DEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIAS 115 (252)
T ss_dssp ---HHHHHHHHHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTT
T ss_pred ---hHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHc
Confidence 1011 1356667777764 466777888888887753
No 28
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=37.26 E-value=2.9e+02 Score=26.67 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=66.1
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHhhhcCCCcHHHHHHHHh---cCCchhHHHHHHHHHHHHHhcccCCCCHHHHHHH--
Q 001132 33 HSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILE---NSQVANARFQAAAAIRDAAMREWSFLTADEKKSL-- 107 (1147)
Q Consensus 33 ~~le~~~~~l~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~---~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~~~~l-- 107 (1147)
+.+|+|+...+..+|-...-++-...+.+++.-..+...|. +++|+.++++|+++|..+|.+. +..-..++
T Consensus 18 ~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNc----G~~Fh~evas 93 (163)
T 1x5b_A 18 QDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANC----GKIFHLEVCS 93 (163)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHT----CHHHHHHHTS
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh----hHHHHHHHhh
Confidence 44777765554445555555555555555654444433331 4688999999999999999985 23233222
Q ss_pred HHHHHHH--HHhccCCCchhHHHHHHHHHHHHHHhhccCCCCC-chhhHHHHHHHHhcc
Q 001132 108 IGFCLCF--VMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSS-DKEAFFSQVHQAVLG 163 (1147)
Q Consensus 108 r~~ll~~--l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~-~~~~~~~~i~~~~~~ 163 (1147)
|.|+=++ ++.. ..++-|++++..++ ++|.+..+. ..-..+.++-+.++.
T Consensus 94 ~~Fl~el~~l~~~--~~~~~Vk~kil~li-----~~W~~~f~~~~~l~~i~~~Y~~Lk~ 145 (163)
T 1x5b_A 94 RDFATEVRAVIKN--KAHPKVCEKLKSLM-----VEWSEEFQKDPQFSLISATIKSMKE 145 (163)
T ss_dssp HHHHHHHHHHHHT--TCCHHHHHHHHHHH-----HHHHHHTTTCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcc--CCCHHHHHHHHHHH-----HHHHHHhcCCcccHHHHHHHHHHHH
Confidence 3344222 2222 24567888776633 456432111 112356666666653
No 29
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=33.19 E-value=2.9e+02 Score=25.53 Aligned_cols=110 Identities=12% Similarity=0.060 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHhhhcCCCcH-HHHH----HHHhcCCchhHHHHHHHHHHHHHhcccCCCCHHHH
Q 001132 30 SIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPY-KACQ----FILENSQVANARFQAAAAIRDAAMREWSFLTADEK 104 (1147)
Q Consensus 30 ~~~~~le~~~~~l~~~~~r~~Ae~~L~~f~~~~~~~-~~~~----~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~~ 104 (1147)
.+...+..+.+.++++.|-++|.+-+.++.. |.-. ..+. ..|++++ ...+=..+..|..+... +.++.++-
T Consensus 5 el~kki~~ll~EY~~~~D~~Ea~~cl~eL~~-p~f~~e~V~~~i~~alE~~~-~~~~e~~~~LL~~L~~~--~~is~~q~ 80 (129)
T 2nsz_A 5 HLVKEIDMLLKEYLLSGDISEAEHCLKELEV-PHFHHELVYEAIVMVLESTG-ESAFKMILDLLKSLWKS--STITIDQM 80 (129)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHTC-GGGHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHT--TCSCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHhCC-CccHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHC--CCcCHHHH
Confidence 3456677777888888889999999999874 4333 2333 3445553 34455566677777655 46887765
Q ss_pred HHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhccC
Q 001132 105 KSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLD 144 (1147)
Q Consensus 105 ~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~ 144 (1147)
..=-.-+++.+-...-+ -+...+.+.+.+++.+..||..
T Consensus 81 ~~Gf~~v~~~l~Dl~lD-iP~a~~~l~~~v~~ai~~g~l~ 119 (129)
T 2nsz_A 81 KRGYERIYNEIPDINLD-VPHSYSVLERFVEECFQAGIIS 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHH-STTHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhhChHhhcC-ccchHHHHHHHHHHHHHCCCCC
Confidence 43333333333222111 2556777888889999999986
No 30
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=32.85 E-value=5.3e+02 Score=32.90 Aligned_cols=143 Identities=12% Similarity=0.029 Sum_probs=82.7
Q ss_pred hhHHhHHHHHHHHHhhchhhhhcCC--HHHHHHHHHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhh
Q 001132 954 KLCHDYFSLLSHLLEVYPETVAQLS--TEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAA 1031 (1147)
Q Consensus 954 kl~~~yf~Ll~~l~e~~~~~l~~L~--~~~f~~ll~sl~~Gl~~~~~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~ 1031 (1147)
+..+++.+++..+.+.|...+..-+ .+.+..++..+.....+.+.+|+..|+++...++.++++ ... ..
T Consensus 312 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~--~~~---~~---- 382 (1049)
T 3m1i_C 312 SFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFY--EPL---KK---- 382 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHH--STT---CG----
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHh--chh---HH----
Confidence 3444555555555555554443311 345666777777767788999999999999999987654 100 00
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHHhhcCCCchH---------------------HHHhhhhHHHHhCCHHHHHHHHHH
Q 001132 1032 GINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMV---------------------GTAADALFPLILCEPRLYQRLGSE 1090 (1147)
Q Consensus 1032 ~~~~~~~~~~~~~l~~~l~~ll~~il~~~~~~~~~---------------------~~~s~~Ll~LI~~~~~~f~~l~~~ 1090 (1147)
.....++.+++..++..+.+.+ +.+|. ..+++.|..+..+.++.......+
T Consensus 383 -------~~~~~~l~~Lv~~ll~~m~~~e-d~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~ 454 (1049)
T 3m1i_C 383 -------HIYEEICSQLRLVIIENMVRPE-EVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMIS 454 (1049)
T ss_dssp -------GGGHHHHHHHHHHHHHTCCCCT-TCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHhcCCCc-ceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 0113567777777777665432 11221 136677777777777654444444
Q ss_pred HHHc-----CCCchHHHHHHHHHHHhhc
Q 001132 1091 LIER-----QANPPFKSRLANALQSLTS 1113 (1147)
Q Consensus 1091 li~~-----q~~~~~~~~l~~aF~~L~~ 1113 (1147)
.+.+ .++...++...-++..+..
T Consensus 455 ~l~~~l~~~~~~W~~~eaal~algsia~ 482 (1049)
T 3m1i_C 455 KLARQIDGSEWSWHNINTLSWAIGSISG 482 (1049)
T ss_dssp HHHHHHTSSSCCHHHHHHHHHHHHHTTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHhc
Confidence 4332 2334566666666766653
No 31
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=32.25 E-value=3.2e+02 Score=25.95 Aligned_cols=77 Identities=12% Similarity=0.118 Sum_probs=45.6
Q ss_pred cCCchhHHHHHHHHHHHHHhcccCCCCHHHHHHH--HHHHHHHHHhcc------CCCchhHHHHHHHHHHHHHHhhccCC
Q 001132 74 NSQVANARFQAAAAIRDAAMREWSFLTADEKKSL--IGFCLCFVMQHA------SSPEGYVQAKISSVAAQLMKRGWLDF 145 (1147)
Q Consensus 74 ~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~~~~l--r~~ll~~l~~~~------~~~~~~v~~~l~~~la~i~K~~W~~~ 145 (1147)
++.|+.++++|+++|..+|.+. +..-..++ +.|+-++ .+.. +..+.-|+.++..++ .+|.+.
T Consensus 48 ~~~n~~vql~AL~LLe~~vkNC----G~~fh~evas~~Fl~eL-~kl~~~k~~~~~~~~~Vk~kil~li-----~~W~~~ 117 (148)
T 1mhq_A 48 QSPQEKEALYALTVLEMCMNHC----GEKFHSEVAKFRFLNEL-IKVLSPKYLGSWATGKVKGRVIEIL-----FSWTVW 117 (148)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHTSHHHHHHH-HHTTCCSTTSCCCCHHHHHHHHHHH-----HHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHc----CHHHHHHHhhHHHHHHH-HHHHccccCCCCCCHHHHHHHHHHH-----HHHHHH
Confidence 4789999999999999999995 33333444 5565553 3221 124677888776543 345432
Q ss_pred CCCchhhHHHHHHHHhc
Q 001132 146 TSSDKEAFFSQVHQAVL 162 (1147)
Q Consensus 146 ~~~~~~~~~~~i~~~~~ 162 (1147)
-+.. +. +.++-+.++
T Consensus 118 f~~~-p~-i~~~y~~Lk 132 (148)
T 1mhq_A 118 FPED-IK-IRDAYQMLK 132 (148)
T ss_dssp CTTC-HH-HHHHHHHHH
T ss_pred cCCC-ch-HHHHHHHHH
Confidence 2211 22 455555554
No 32
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=32.11 E-value=3.6e+02 Score=27.31 Aligned_cols=131 Identities=19% Similarity=0.241 Sum_probs=82.0
Q ss_pred hhhHHhHHHHHHHHHhhchhhhhcCCHHHHHHHHHHHHhhc-cccCHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhh
Q 001132 953 PKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGL-HHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAA 1031 (1147)
Q Consensus 953 Pkl~~~yf~Ll~~l~e~~~~~l~~L~~~~f~~ll~sl~~Gl-~~~~~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~ 1031 (1147)
.+.++.-..-|..+.+.++... + ..+..++..+...+ +..+..|...+|.++..|+..+.+. .
T Consensus 29 w~~R~~a~~~L~~l~~~~~~~~---~-~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~-------~----- 92 (242)
T 2qk2_A 29 WTLRKESLEVLEKLLTDHPKLE---N-GEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR-------F----- 92 (242)
T ss_dssp HHHHHHHHHHHHHHHHHCSSBC---C-CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGG-------G-----
T ss_pred HHHHHHHHHHHHHHHccCCCCC---C-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhh-------H-----
Confidence 5667777777777888776432 1 23567788888888 4889999999999999999754211 0
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHHhhcCCCchHHHHhhhhHHHHhCCHHHHHHHHHHHHHcC--CCchHHHHHHHHHH
Q 001132 1032 GINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQ--ANPPFKSRLANALQ 1109 (1147)
Q Consensus 1032 ~~~~~~~~~~~~~l~~~l~~ll~~il~~~~~~~~~~~~s~~Ll~LI~~~~~~f~~l~~~li~~q--~~~~~~~~l~~aF~ 1109 (1147)
......++..+++.+ +|-+...-..+..+|..++...+ +..+...+...- .++..|........
T Consensus 93 ----------~~~~~~ilp~ll~~l--~d~~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr~~~l~~l~ 158 (242)
T 2qk2_A 93 ----------SNYASACVPSLLEKF--KEKKPNVVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFIA 158 (242)
T ss_dssp ----------HHHHHHHHHHHHHGG--GCCCHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 133455566666632 45444445567777777764332 344444444332 34666666666666
Q ss_pred Hhhc
Q 001132 1110 SLTS 1113 (1147)
Q Consensus 1110 ~L~~ 1113 (1147)
.++.
T Consensus 159 ~~l~ 162 (242)
T 2qk2_A 159 RALT 162 (242)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6553
No 33
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=31.20 E-value=3.2e+02 Score=29.87 Aligned_cols=113 Identities=9% Similarity=0.015 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHhhhcCCCcHHHHHHHHhcC--CchhHHHHHHHHHHHHHhcccCCCCHHHHHH
Q 001132 29 QSIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENS--QVANARFQAAAAIRDAAMREWSFLTADEKKS 106 (1147)
Q Consensus 29 ~~~~~~le~~~~~l~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S--~~~~~~f~a~~~L~~~i~~~W~~l~~~~~~~ 106 (1147)
+.+...+..+...++++.|-++|.+-+.++.....-...+..++..+ +++..+=.++..|..+... +.++.++-..
T Consensus 8 ee~~k~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~--~~is~~~~~~ 85 (339)
T 1ug3_A 8 EELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCA--GHLSTAQYYQ 85 (339)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHT--TSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHC--CCCCHHHHHH
Confidence 34456677777888887888999999888874223334455554322 2344555666777777655 5677766544
Q ss_pred HHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhccC
Q 001132 107 LIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLD 144 (1147)
Q Consensus 107 lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~ 144 (1147)
=-.-+++.+-...-+ -|.....+...+++.+..||..
T Consensus 86 Gf~~~~~~l~Dl~lD-iP~a~~~La~~v~~~i~~g~l~ 122 (339)
T 1ug3_A 86 GLYEILELAEDMEID-IPHVWLYLAELVTPILQEGGVP 122 (339)
T ss_dssp HHHHHHHHHHHHTTT-CTTHHHHHHHHHGGGGSTTSCC
T ss_pred HHHHHHhhChHhhcC-ccchHHHHHHHHHHHHHCCCCC
Confidence 333344444443322 3667788888888888888875
No 34
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=30.92 E-value=3.2e+02 Score=26.65 Aligned_cols=63 Identities=8% Similarity=-0.080 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHhhhcCCCcHHHHHHHHh---cCCchhHHHHHHHHHHHHHhcc
Q 001132 33 HSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILE---NSQVANARFQAAAAIRDAAMRE 95 (1147)
Q Consensus 33 ~~le~~~~~l~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~---~S~~~~~~f~a~~~L~~~i~~~ 95 (1147)
+.+|+|+...+..+|-...-++-...+.++..-..+...|. ++.|+.++++|+++|..+|.+.
T Consensus 16 ~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNC 81 (171)
T 1juq_A 16 SWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNC 81 (171)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHc
Confidence 34777765555445545555555555555554443333331 3679999999999999999985
No 35
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=30.84 E-value=2.8e+02 Score=26.08 Aligned_cols=93 Identities=15% Similarity=0.050 Sum_probs=52.9
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHhhhcCCCcHHHHHHH----HhcCCchhHHHHHHHHHHHHHhcccCCCCHHHHHHH--
Q 001132 34 SIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFI----LENSQVANARFQAAAAIRDAAMREWSFLTADEKKSL-- 107 (1147)
Q Consensus 34 ~le~~~~~l~~~~~r~~Ae~~L~~f~~~~~~~~~~~~i----L~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~~~~l-- 107 (1147)
.+|+|....+..+|-....++-...+.+|+.-..+-.. | +++++.+++.|+++|..++.+. +..-..++
T Consensus 9 ~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl-~~~n~~~ql~AL~LLe~~vkNc----G~~f~~evas 83 (140)
T 3ldz_A 9 DVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRV-NHKDPHVAMQALTLLGACVSNC----GKIFHLEVCS 83 (140)
T ss_dssp HHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHSS
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHhc----CHHHHHHHhh
Confidence 35666544444445455555555555555544433333 3 3578999999999999999885 33333333
Q ss_pred HHHHHHH--HHhccCCCchhHHHHHHHHH
Q 001132 108 IGFCLCF--VMQHASSPEGYVQAKISSVA 134 (1147)
Q Consensus 108 r~~ll~~--l~~~~~~~~~~v~~~l~~~l 134 (1147)
|.|+=++ ++.+ .+.-|++++..++
T Consensus 84 ~~Fl~el~~l~~~---~~~~Vk~kil~li 109 (140)
T 3ldz_A 84 RDFASEVSNVLNK---GHPKVCEKLKALM 109 (140)
T ss_dssp HHHHHHHHHHHHH---SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc---CCHHHHHHHHHHH
Confidence 4444332 1222 3567777776544
No 36
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=28.16 E-value=1.2e+02 Score=29.24 Aligned_cols=98 Identities=10% Similarity=0.011 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHhhhcCCCcHHHHHHHH----hcCCchhHHHHHHHHHHHHHhcccCCCCHHHHHHH-
Q 001132 33 HSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFIL----ENSQVANARFQAAAAIRDAAMREWSFLTADEKKSL- 107 (1147)
Q Consensus 33 ~~le~~~~~l~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL----~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~~~~l- 107 (1147)
+.+|+|+...+..+|-...-++-...+.++..-..+-..| .++.|+.++++|+++|..++.+. +..-..++
T Consensus 19 ~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNc----G~~fh~eva 94 (157)
T 1elk_A 19 QRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNC----GHRFHVLVA 94 (157)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHS----CHHHHHHHT
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh----CHHHHHHHh
Confidence 4477776555544554444445444555555444443333 44688999999999999999985 22222222
Q ss_pred -HHHHHHHHHhcc---CCCchhHHHHHHHHH
Q 001132 108 -IGFCLCFVMQHA---SSPEGYVQAKISSVA 134 (1147)
Q Consensus 108 -r~~ll~~l~~~~---~~~~~~v~~~l~~~l 134 (1147)
+.|+-+++++.- .+.+.-|++++..++
T Consensus 95 ~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li 125 (157)
T 1elk_A 95 SQDFVESVLVRTILPKNNPPTIVHDKVLNLI 125 (157)
T ss_dssp SHHHHHHHTHHHHSTTTCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence 344444222211 123456777765433
No 37
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=27.36 E-value=3.2e+02 Score=31.55 Aligned_cols=100 Identities=13% Similarity=0.140 Sum_probs=62.9
Q ss_pred HHHHHHHhhCCCC--HHHHHHHHHhhh---cCC--------CcHHHHHHHHhcCCchhHHHHHHHHHHHHHhcccCCCCH
Q 001132 35 IEIACSSIQMHVN--PAAAEATILGLC---QSP--------QPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTA 101 (1147)
Q Consensus 35 le~~~~~l~~~~~--r~~Ae~~L~~f~---~~~--------~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~ 101 (1147)
++.+++.++++.. +.+|-+.+..+- ++| ...+....+|.+++++.+|+.|+.+|.+..... +
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-----~ 133 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-----S 133 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-----H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-----H
Confidence 5556666666421 344544444432 233 236777888999999999999999999987543 5
Q ss_pred HHHHHHHH-HHHHHHHhccCCCchhHHHHHHHHHHHHHH
Q 001132 102 DEKKSLIG-FCLCFVMQHASSPEGYVQAKISSVAAQLMK 139 (1147)
Q Consensus 102 ~~~~~lr~-~ll~~l~~~~~~~~~~v~~~l~~~la~i~K 139 (1147)
+++..+.+ -.+..+++.-.....-|+.+.+.++..|..
T Consensus 134 e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~ 172 (510)
T 3ul1_B 134 EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG 172 (510)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 66655543 233333333223457788888888877763
No 38
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=27.25 E-value=1.7e+02 Score=30.75 Aligned_cols=108 Identities=8% Similarity=0.045 Sum_probs=63.3
Q ss_pred HHHHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHhhcCCC
Q 001132 984 HVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSP 1063 (1147)
Q Consensus 984 ~ll~sl~~Gl~~~~~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~il~~~~~~ 1063 (1147)
.+++.+..|+++-.+-+...|+..|..++.-+..... .. ...+..++..+.. ++++.+.
T Consensus 139 ~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~------~~-------------k~~l~~i~~~l~k--~l~d~~~ 197 (278)
T 4ffb_C 139 QSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNV------NV-------------QTFLPELLKHVPQ--LAGHGDR 197 (278)
T ss_dssp HHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTC------CH-------------HHHHHHHGGGHHH--HHTCSSH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcC------Cc-------------hhHHHHHHHHHHH--HHhCCcH
Confidence 3467778899999999999999999988876522110 00 1234444544444 2467666
Q ss_pred chHHHHhhhhHHHHhCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHhhc
Q 001132 1064 DMVGTAADALFPLILCEPRLYQRLGSELIERQANPPFKSRLANALQSLTS 1113 (1147)
Q Consensus 1064 ~~~~~~s~~Ll~LI~~~~~~f~~l~~~li~~q~~~~~~~~l~~aF~~L~~ 1113 (1147)
+.=..+-..+..+..+-.+........++.... |..++.+.+.|++.-.
T Consensus 198 ~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lk-p~~~k~le~~f~k~~~ 246 (278)
T 4ffb_C 198 NVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLK-PIQVKDLHKLFAKVGD 246 (278)
T ss_dssp HHHHHHHHHHHHHHTC-----------CTTSSC-HHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCC-HHHHHHHHHHHHhcCC
Confidence 654455555555555555544445555566554 7888899999988753
No 39
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=23.30 E-value=4.2e+02 Score=30.48 Aligned_cols=141 Identities=11% Similarity=0.033 Sum_probs=84.4
Q ss_pred HHHHHHHHHhhCCCC--HHHHHHHHHhhhc-CC----------CcHHHHHHHHhcCCchhHHHHHHHHHHHHHhcccCCC
Q 001132 33 HSIEIACSSIQMHVN--PAAAEATILGLCQ-SP----------QPYKACQFILENSQVANARFQAAAAIRDAAMREWSFL 99 (1147)
Q Consensus 33 ~~le~~~~~l~~~~~--r~~Ae~~L~~f~~-~~----------~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l 99 (1147)
+.+..+.+.+.++.. +..|-..|..+-. .+ ..++....+|..++++.+++.|+.+|.+.....
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~---- 149 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT---- 149 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC----
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC----
Confidence 334555555555321 4666677766633 22 357788888988777999999999999987642
Q ss_pred CHHHHHHHHH-HHHHHHHhccCCCchhHHHHHHHHHHHHHHhhccCCCCCchh-----hHHHHHHHHhccCCChhhHHHH
Q 001132 100 TADEKKSLIG-FCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKE-----AFFSQVHQAVLGIHGVDTQFIG 173 (1147)
Q Consensus 100 ~~~~~~~lr~-~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~-----~~~~~i~~~~~~~~s~~~~~~~ 173 (1147)
++.+..+.+ -.+..+++.-.+...-|+...+.++..|...+- ..+. ..+..+++.+....++.....+
T Consensus 150 -~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~-----~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a 223 (528)
T 4b8j_A 150 -SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSP-----KCRDLVLANGALLPLLAQLNEHTKLSMLRNA 223 (528)
T ss_dssp -HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCH-----HHHHHHHHTTCHHHHHHTCCTTCCHHHHHHH
T ss_pred -HHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCh-----hhHHHHHHCCcHHHHHHHHhcCCCHHHHHHH
Confidence 444444332 233334433223457788888888888874211 0111 2345556666432356667778
Q ss_pred HHHHHHHHhh
Q 001132 174 INFLESLVSE 183 (1147)
Q Consensus 174 l~iL~~lv~E 183 (1147)
+..|..+...
T Consensus 224 ~~~L~~L~~~ 233 (528)
T 4b8j_A 224 TWTLSNFCRG 233 (528)
T ss_dssp HHHHHHHHCS
T ss_pred HHHHHHHHcC
Confidence 8888877654
No 40
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=22.85 E-value=4.6e+02 Score=24.97 Aligned_cols=109 Identities=12% Similarity=0.055 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHhhhcCCCcH-HHH----HHHHhcCCchhHHHHHHHHHHHHHhcccCCCCHHHHH
Q 001132 31 IMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPY-KAC----QFILENSQVANARFQAAAAIRDAAMREWSFLTADEKK 105 (1147)
Q Consensus 31 ~~~~le~~~~~l~~~~~r~~Ae~~L~~f~~~~~~~-~~~----~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~~~ 105 (1147)
+...+..+.+.++++.|-++|.+-+.++.. |.-. ..+ ..-|+++ +...+=..+..|..+... +.++.++-.
T Consensus 8 l~kki~~lL~EY~~~~D~~EA~~cl~EL~~-p~f~~e~V~~~i~~alE~~-~~~~re~~~~LL~~L~~~--~~is~~q~~ 83 (152)
T 2ion_A 8 LVKEIDMLLKEYLLSGDISEAEHCLKELEV-PHFHHELVYEAIVMVLEST-GESAFKMILDLLKSLWKS--STITIDQMK 83 (152)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHTC-GGGHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHT--TCSCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHC--CCcCHHHHH
Confidence 446677777888888889999999999874 4332 333 3344655 344555666777777655 468877754
Q ss_pred HHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhccC
Q 001132 106 SLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLD 144 (1147)
Q Consensus 106 ~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~ 144 (1147)
.=-.-+++.+-...-+ -+.+.+.+...+++.+..+|..
T Consensus 84 ~Gf~~vl~~ldDl~lD-iP~A~~~la~~v~~ai~~g~l~ 121 (152)
T 2ion_A 84 RGYERIYNEIPDINLD-VPHSYSVLERFVEECFQAGIIS 121 (152)
T ss_dssp HHHHHHHHHHHHHHHH-STTHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhChHhccC-ccchHHHHHHHHHHHHHCCCCC
Confidence 4333344433222111 2566777888889999999986
No 41
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=22.29 E-value=3.4e+02 Score=34.20 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=43.0
Q ss_pred cchhhHHhHHHHHHHHHhhchhhhhcCCHHHHHHHHHHHHhhccccCHHHHHHHHHHHHHHHHH
Q 001132 951 KYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASY 1014 (1147)
Q Consensus 951 ~yPkl~~~yf~Ll~~l~e~~~~~l~~L~~~~f~~ll~sl~~Gl~~~~~~I~~~~l~~l~~l~~~ 1014 (1147)
..|.++......+...++.... .++.+..++..+..+|.+ +.|...+|.++..++.-
T Consensus 501 ~~~~vr~~~~~~l~~~~~~l~~-----~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~ 557 (963)
T 2x19_B 501 SNVQLADTVMFTIGALSEWLAD-----HPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRE 557 (963)
T ss_dssp CSHHHHHHHHHHHHHTHHHHHH-----CHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHh-----CHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHH
Confidence 4788999888888877653221 346677788888888865 78999999999988864
No 42
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=21.35 E-value=3.7e+02 Score=29.86 Aligned_cols=139 Identities=11% Similarity=0.006 Sum_probs=82.2
Q ss_pred HHHHHHHhhCCCC--HHHHHHHHHhhh---cCC---------CcHHHHHHHHhcCCchhHHHHHHHHHHHHHhcccCCCC
Q 001132 35 IEIACSSIQMHVN--PAAAEATILGLC---QSP---------QPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLT 100 (1147)
Q Consensus 35 le~~~~~l~~~~~--r~~Ae~~L~~f~---~~~---------~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~ 100 (1147)
+..+++.+.++.. |..|-..|..+- .+| ..++....+|....++.++..|+.+|.+.....
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~----- 96 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGN----- 96 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-----
Confidence 3444555544321 566666666542 232 456777778877778999999999999987642
Q ss_pred HHHHHH-HHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhccCCCCCch-----hhHHHHHHHHhccCCChhhHHHHH
Q 001132 101 ADEKKS-LIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDK-----EAFFSQVHQAVLGIHGVDTQFIGI 174 (1147)
Q Consensus 101 ~~~~~~-lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~-----~~~~~~i~~~~~~~~s~~~~~~~l 174 (1147)
++.+.. ++.-++..+.+.-.+...-|+.....++..+...+- ..+ ...+..+++.+....++.....++
T Consensus 97 ~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~-----~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~ 171 (450)
T 2jdq_A 97 SLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDST-----MCRDYVLDCNILPPLLQLFSKQNRLTMTRNAV 171 (450)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH-----HHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCH-----HHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHH
Confidence 233222 222344444443233467788888888888874321 011 134556666665323556677788
Q ss_pred HHHHHHHhh
Q 001132 175 NFLESLVSE 183 (1147)
Q Consensus 175 ~iL~~lv~E 183 (1147)
..|..+...
T Consensus 172 ~~L~~l~~~ 180 (450)
T 2jdq_A 172 WALSNLCRG 180 (450)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhCC
Confidence 888877653
No 43
>4fdd_B RNA-binding protein FUS; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens}
Probab=20.81 E-value=40 Score=22.25 Aligned_cols=14 Identities=64% Similarity=1.123 Sum_probs=7.8
Q ss_pred CCCCCCCCCCCCCc
Q 001132 11 GGGDDGGGGGGPAD 24 (1147)
Q Consensus 11 ~~~~~~~~~~~~~d 24 (1147)
|||+.||-|+|-||
T Consensus 2 gg~drgG~gpgKM~ 15 (29)
T 4fdd_B 2 GGGDRGGFGPGKMD 15 (29)
T ss_pred CccccCCcCCcccc
Confidence 44555554556676
No 44
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=20.29 E-value=1.1e+02 Score=26.76 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH
Q 001132 79 NARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLC 113 (1147)
Q Consensus 79 ~~~f~a~~~L~~~i~~~W~~l~~~~~~~lr~~ll~ 113 (1147)
...+||+..-.+- ..|..+|.+.|.+|++|--.
T Consensus 52 ~~~L~aL~gAi~G--~~w~~l~~~~K~~L~~~~~~ 84 (93)
T 3mab_A 52 MSELYALEGAVQG--IRWHGLDEAKKIELKKFHQS 84 (93)
T ss_dssp HHHHHHHHHHHHT--SCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CcHHHCCHHHHHHHHHHHHH
Confidence 4455655443332 79999999999999998654
No 45
>2lqh_B Forkhead box O3, FOXO3A; promiscuous binding, intrinsic disorder, transcription; NMR {Homo sapiens} PDB: 2lqi_B
Probab=23.64 E-value=25 Score=25.35 Aligned_cols=12 Identities=67% Similarity=1.553 Sum_probs=4.6
Q ss_pred CCCCCCCCCCCCC
Q 001132 9 NGGGGDDGGGGGG 21 (1147)
Q Consensus 9 ~~~~~~~~~~~~~ 21 (1147)
.||| .+||.|||
T Consensus 24 dggg-sgggsggg 35 (52)
T 2lqh_B 24 DGGG-SGGGSGGG 35 (52)
Confidence 3443 33333334
Done!