Query 001133
Match_columns 1145
No_of_seqs 227 out of 1115
Neff 3.2
Searched_HMMs 46136
Date Thu Mar 28 16:43:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001133.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001133hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1977 DNA mismatch repair pr 100.0 3.4E-95 7E-100 824.0 24.5 875 1-1142 234-1140(1142)
2 COG0323 MutL DNA mismatch repa 100.0 1.2E-40 2.5E-45 388.4 31.7 192 904-1115 447-638 (638)
3 PRK00095 mutL DNA mismatch rep 100.0 1.5E-39 3.4E-44 377.4 23.1 192 904-1115 426-617 (617)
4 PF08676 MutL_C: MutL C termin 100.0 6.1E-30 1.3E-34 244.9 14.8 143 908-1071 2-144 (144)
5 KOG1978 DNA mismatch repair pr 99.9 2.9E-27 6.2E-32 273.4 11.0 190 900-1105 480-669 (672)
6 smart00853 MutL_C MutL C termi 99.9 2.7E-23 5.8E-28 196.4 17.4 134 909-1060 2-136 (136)
7 PF01119 DNA_mis_repair: DNA m 99.8 6.5E-19 1.4E-23 166.5 6.8 76 2-94 44-119 (119)
8 cd03486 MutL_Trans_MLH3 MutL_T 99.7 1.4E-18 3E-23 169.5 7.1 87 2-94 47-141 (141)
9 cd00782 MutL_Trans MutL_Trans: 99.7 2.8E-18 6.1E-23 161.0 7.0 76 1-93 47-122 (122)
10 cd03485 MutL_Trans_hPMS_1_like 99.7 6.1E-18 1.3E-22 163.0 7.4 80 1-94 52-132 (132)
11 cd03482 MutL_Trans_MutL MutL_T 99.7 8.5E-18 1.8E-22 160.9 7.0 76 2-94 48-123 (123)
12 cd03483 MutL_Trans_MLH1 MutL_T 99.7 1.7E-17 3.7E-22 159.6 6.7 76 1-93 51-126 (127)
13 cd03484 MutL_Trans_hPMS_2_like 99.6 7.5E-16 1.6E-20 151.0 7.9 74 2-93 68-141 (142)
14 PRK00095 mutL DNA mismatch rep 99.4 7.4E-14 1.6E-18 164.1 7.0 78 2-96 251-328 (617)
15 cd00329 TopoII_MutL_Trans MutL 98.9 6.4E-10 1.4E-14 99.7 3.5 56 2-74 48-107 (107)
16 KOG1979 DNA mismatch repair pr 98.4 3.1E-07 6.8E-12 107.4 6.9 86 2-104 262-347 (694)
17 TIGR00585 mutl DNA mismatch re 97.4 6.4E-05 1.4E-09 82.4 1.3 30 45-74 283-312 (312)
18 KOG1978 DNA mismatch repair pr 97.0 0.0011 2.5E-08 79.7 7.3 73 1-95 247-319 (672)
19 KOG1979 DNA mismatch repair pr 64.3 33 0.00071 42.7 9.4 51 901-951 465-515 (694)
20 PF02742 Fe_dep_repr_C: Iron d 61.4 5.8 0.00013 35.6 2.1 38 1059-1099 32-69 (71)
21 COG1321 TroR Mn-dependent tran 45.9 20 0.00043 37.2 3.3 38 1058-1098 95-132 (154)
22 PRK14867 DNA topoisomerase VI 40.4 26 0.00056 44.0 3.7 37 8-61 272-308 (659)
23 TIGR00106 uncharacterized prot 29.4 55 0.0012 31.8 3.2 52 60-112 31-84 (97)
No 1
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=100.00 E-value=3.4e-95 Score=823.96 Aligned_cols=875 Identities=20% Similarity=0.179 Sum_probs=708.9
Q ss_pred CccccccccccccHHHHHHHHHh--hccCCCCccccCCCccCCCCCCCCCceEEEEeecCCCcceeeecCCcceEEecCc
Q 001133 1 MSDINSRYVCKGPIHKLLNHLAA--SFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDW 78 (1145)
Q Consensus 1 ~~fVN~RlV~kt~iHkaln~l~r--sli~~~s~~~~~~~~~~krs~~~~~PvyVLnl~CppseyDVnvhPaKTlVeFkDW 78 (1145)
|-|||+|++++|..|+++.+++| +++++ |.|||||.||..+|||+|+|+||+|||++|
T Consensus 234 ~l~v~~~~~~~~~kh~~~~q~lR~~~~~~~--------------------P~yvi~v~cp~~ly~vs~epakt~ieF~~w 293 (1142)
T KOG1977|consen 234 FLFVNKRLVLRTKKHKLIDQLLRKESIICK--------------------PKYVINVQCPFCLYDVSMEPAKTLIEFQNW 293 (1142)
T ss_pred eeeecchhhhccchhhHHHHHHHhhheecc--------------------CcceeecccchhhhhhhcCcccchhhhhcc
Confidence 67999999999999999999999 55666 669999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhcCccCcccc--cccccccCCCCccccccccCccceechHhhhhHHhhhhhchhhhhhhhhhhc
Q 001133 79 EPVLAFIERAIRSAWMKKIAHDSFDV--DMLEDAELPLESSRFQSHQSSTHLHSSPLKNLAKQRDHMFHKECERITFQEF 156 (1145)
Q Consensus 79 d~Vl~~ve~aVr~~l~~~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1145)
++|+.||++.++.||++...-.-|+. +.++|+++ |- +--.+-+-+|..-|..|-|+.
T Consensus 294 ~~~l~~I~~~~~~~~kkd~~f~~~~G~~~~lad~~~-------Q~-------------~vds~~r~~~~~~~~~i~~~~- 352 (1142)
T KOG1977|consen 294 DTLLFCIQEGVKMFLKKDKLFVELSGEGFSLADATL-------QK-------------RVDSDERSNFQEACNNILDSY- 352 (1142)
T ss_pred hhhHhHHHHhhhhhhhcceeEEEecCcccccchhhh-------hh-------------hcchhhhhhhhhhhhhhhhhh-
Confidence 99999999999999999888877776 56666665 11 111223445566666665542
Q ss_pred ccCchhhccccccceeeccCCCCCCccCCcccccccCCCCCccceeeeeeccccccCCCccccCCccccchhhcccchhh
Q 001133 157 QKDPVELAEENTEMEFFSQPKHSSSLLDGSFAECLPIVPPKIDHRVWTIESSWFQDHQPSRHLFSPPLENLKKEGDHLFR 236 (1145)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (1145)
+.++..|+ .|-+|.- -| .+|.||..||- -...+..|+.|+-
T Consensus 353 -------~~~~~~~~---------------------~~krk~~-----~~----n~~~~ss~lf~--a~df~~~g~~l~~ 393 (1142)
T KOG1977|consen 353 -------EMFNLQSK---------------------AVKRKTT-----AE----NVNTQSSRLFE--ATDFNTNGAFLYI 393 (1142)
T ss_pred -------hhhhhhhh---------------------hhhhhhc-----cc----ccCCchhccch--hhccCCCCceEEe
Confidence 11111111 1223321 11 35667766663 3445556666543
Q ss_pred hcccccccccCCCCchhhhccccccc-cccCCCcccccCCCCccccccccccccccceeeeeccceeecccCCcccCccc
Q 001133 237 KECERITFGDAEKDPAELQEENTEME-YVPQPKYSFGLSDGSFAKCLPIVPWKIDRHAWTIESSRFQYHQSSPHLYSSPL 315 (1145)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (1145)
.+ .-|.++ .+|+ -.-|||-+ |-+
T Consensus 394 ~k----svg~p~----------~~~~~~~~~~kd~-~~~----------------------------------------- 417 (1142)
T KOG1977|consen 394 YK----SVGPPH----------SKMTEPSLQNKDS-SCS----------------------------------------- 417 (1142)
T ss_pred ec----ccCCCc----------ccccccccCcccc-ccc-----------------------------------------
Confidence 21 112211 1111 12233322 111
Q ss_pred ccccccccchhHhhhcccccccccccChhhhccccccccccCcccccccCCCcchhhhhhhhhhccccCCccCCeeeecc
Q 001133 316 ENLSKEGDHLFREECERITFGEFEKHTPELKEENSKRELVSQPKYSSKLLDCPFAECLSPVLRKIDLHGWTSGNRFSLKG 395 (1145)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (1145)
+..--+-|.+.+.| =||-+||..-..+-.+-. . +-.+|- --||
T Consensus 418 ~~~~~~~eti~~S~-----~~e~e~~~~~~~~~~~le------~--~~~~dt--------------------~C~~---- 460 (1142)
T KOG1977|consen 418 ESKMLEQETIVASE-----AGENEKHKKSFLEHSSLE------N--LSPFDT--------------------PCHF---- 460 (1142)
T ss_pred chhhhchhhhhhcc-----cccccccccccccccccc------c--cccccC--------------------chhh----
Confidence 11111233333333 256666643332221111 0 111121 1122
Q ss_pred ceeeecccccCCCCccccccccccccc--CCceecccCCCCCCCCCCCCCCCccccccchhhccccCcccccccccCCCC
Q 001133 396 SYFLETCFLADGRSSIPVEGDLLNSQR--GYEYLQIEPGVSNGASGTASPLDKDEFSNEFEVSKDIKKPLRLSCFSQGSP 473 (1145)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~k~~~~~c~~~~~~ 473 (1145)
.++..|+ .++.++++||++++.+ + ++ ++|+|++||+.+++|+++++|++|.+.
T Consensus 461 -e~~~~~q---~tt~~~~~~d~lkd~~i~n-q~--------------------k~~kd~~evt~~~gkh~~~~c~~r~~~ 515 (1142)
T KOG1977|consen 461 -ELEIWKQ---STTVNGMAADILKDNRIQN-QP--------------------KRFKDATEVTTLWGKHSAQTCGRRNVF 515 (1142)
T ss_pred -hhhcccc---ccccccchhhhhcChhhhc-cc--------------------ccccchhhhhhhHHHHHhhhcccccee
Confidence 2677788 8999999999999998 5 77 999999999999999999999999999
Q ss_pred CCCCCCccCCcccccccCccccccccccccccccchhhhhhccccc---cccccCCCccccc----ccccccCCcccccc
Q 001133 474 PLGGPLFSGGEERCESSTGCFKYKRKRKRVCYDKRMDILEADFSNQ---SFDSFSRTPLQDE----ASCSQHLPRLSTAG 546 (1145)
Q Consensus 474 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 546 (1145)
.+++|.+|| ++++|..+++|++..|...+..+-+- .++++ .=|--.|++||++ ..|+ +..+
T Consensus 516 s~~~p~isH-V~~~e~~ep~i~n~~~~~~R~~eTf~-----g~t~~s~~TPD~s~~as~~d~~~~~~nCs------t~~~ 583 (1142)
T KOG1977|consen 516 SYSTPFISH-VVQNEETEPSIKNYVRGPTRAQETFG-----GRTRHSVETPDISDLASTLDQLPNKKNCS------TNIS 583 (1142)
T ss_pred eccCCccee-eeccccccccccccccCCchhhhhcc-----CcccccccCCCccccccccccCccccccc------cccc
Confidence 999999999 99999999999998887776654110 11111 1233449999998 7898 6655
Q ss_pred --ccccccccchhhhcccCCCCCCcccccccCCCCCcccccCccccccccccccccccCCCCCCCCCCCCCccccccccc
Q 001133 547 --DITAGFDLMSRASLNLFPSHAEPFTKETNFLSDSIEPVGNSVSDYKALNSVWCSKISDPFPQGASWNDGHFIYNNALE 624 (1145)
Q Consensus 547 --~~~~~~d~~~~~~~~~~~~~~e~~~~e~~~~~~s~~~~g~s~s~~~~~ns~w~~~~s~~~~~~~~~~~~~~~~~~~~~ 624 (1145)
.+.+++..++...+..+ +|+|+.+.++++ +.+++|+|+.|+++|+++|.+||+.+ .+|.|..++..+|++++
T Consensus 584 ~~~~~e~tat~p~~~v~~d-srd~~igskk~i---~r~n~~sS~~Gs~~ls~q~~P~~~~~--~~t~~~sd~~~gCri~~ 657 (1142)
T KOG1977|consen 584 YGLENEPTATYPMFHVSND-SRDKLIGSKKPI---VRKNLLSSQLGSLELSLQVEPDILLK--DTTMEHSDSDSGCRIAS 657 (1142)
T ss_pred ccccCCccccccchhcccc-chhhhhccccce---eeeecchhhhcceeecccccccccCc--cccccccccccccchhh
Confidence 88999999999988777 889999999999 89999999999999999999999998 79999999999999999
Q ss_pred cccccCCCCCcCCcccccc-CcccccccccccCccccccccccCcccccccCchhHHhhhhccCCCCCcCCccCCCCCCC
Q 001133 625 GHSILGEGTSCGQLADTEE-NYKFDYDSKLRRSNQEKCTTARSGLRFEYYDNSSEDFCKYLQEHDPCNKFSREHSDVPFD 703 (1145)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1145)
.++++|| +|.+.++.+.. |++|||++ .|++.+|.| +..+|++..+|++.
T Consensus 658 ~~l~~ek-~p~~~~~~s~~nni~~D~e~---~~e~~~~~~--g~~Sr~~~klcs~~------------------------ 707 (1142)
T KOG1977|consen 658 HILDSEK-FPFSKKELSLFNNIPLDLEK---SSEFNELPN--GDSSRKDSKLCSAT------------------------ 707 (1142)
T ss_pred hhccccc-CCCchhhhhhhcCccccccc---ccccccCcC--Cchhhhhhhhcccc------------------------
Confidence 9999999 99999999999 99999999 999999999 99999999999988
Q ss_pred CCcccccccc----cccccCchhhhcccccCCCCCCCcccccccccCCCCCcccccccccccccccccccCC--CCCccc
Q 001133 704 KTDWLCSVLS----SIEYDNPETQRYKFRNHNCEPNPIHKELSRRSHSAPPFHRHKRRYISLNCCSVEAGKS--NAHTLH 777 (1145)
Q Consensus 704 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~sappf~~~k~~~~~l~~~~~~~~~~--~~~~~~ 777 (1145)
.|..|.+++ .+..++..|++.+|.|+...|++++|+|++|+++||||||+++||+++.|.+..+.++ .+.+.+
T Consensus 708 -~D~~f~~s~~h~~~~~td~~~ir~~~~~y~~~nq~~~gk~~~~~~ra~~~~~~~~k~fi~~~c~d~T~~qN~~cp~~~e 786 (1142)
T KOG1977|consen 708 -QDNSFNKSKTHSNSNTTDNCVIRETPLVYPYNNQKVTGKDSDVLIRASEQSLDSPKGFIMNPCEDATGDQNGICPQSEE 786 (1142)
T ss_pred -ccccccccccccCCeeecceeeeccceeeecccccccccccchhhhcCccccccccceEEeehhhccCCcCCCCcchhH
Confidence 677777777 6778999999999999999999999999999999999999999999999999999975 677777
Q ss_pred cccCCCccccccccccccCcccccccCC-CcccCCCcchhhhcccch-------hhHhhhhhcccccccCcccccccccc
Q 001133 778 CAKNSPEAGAFKHLQQSSGVCNANVKPS-SEEEDFRPDFKIESSTIL-------DLEETHKAENFKLSLCPHAHLGAQAE 849 (1145)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~~-------~~~~~~~~~~~~~~~~~f~~~~~~~~ 849 (1145)
| ...++.... |+.++. .+|+.| +.|+..+. |+ ..+.|..++.-.+..+.|++|.++..
T Consensus 787 ~---~~~aC~et~---------~~~~c~~l~dv~y-~~m~ev~k-~tf~A~dlk~~a~C~tV~vd~~~ed~~q~f~Se~~ 852 (1142)
T KOG1977|consen 787 S---KARACSETE---------ESNTCCRLFDVAY-GRMVEVNK-MTFIAPDLKIQAACTTVAVDVVLEDRCQPFRSELV 852 (1142)
T ss_pred h---hcccchhhh---------hhccchhHHHHHH-HHHHHhhh-cceecccchhhccceEEEeeeehhhhhcccchhhc
Confidence 7 677777666 777777 566655 88887665 33 45679999999999999999999966
Q ss_pred CccccccccccCCCCCcccCCcccccccCCCcccccccccccccc-cccccCcCcccccCceEEEEEcCeEEEEEeCCeE
Q 001133 850 GTSIISGTKWRNGHPQTTNNNISCDIHNQDNILDISSGLLHLTGE-FFIPDSINKSCLEDAKVLQQVDKKFIPVVAGGTL 928 (1145)
Q Consensus 850 ~~~~d~~tkwrn~~~~~~~~~~s~~i~~q~nIlDISsg~~~l~~~-slVp~rISKe~L~d~KVIGQVdnKYILaE~gdgL 928 (1145)
-.-++..++||..+..-+|+..+++.+.+.-..+++.+..++..+ +++|++++|.++..++|+.|++++||.+..-...
T Consensus 853 l~~lk~~~~wr~~~~~~~V~~ES~e~~~~e~~~~v~a~llev~~d~sl~p~~~nk~~i~~~qvlqqvDkkyi~~v~~~~~ 932 (1142)
T KOG1977|consen 853 LPFLKRARAWRTVMVDDTVSSESLESLFSEWDNPVFARLLEVAVDVSLYPYRFNKGMIHSMQVLQQVDKKYIACVMSTKT 932 (1142)
T ss_pred cccchhhhhhccccccccccHHhhhhhccccccchhhcchhhccchhhchhhhcccchhhHHHHHhhchhheeeeeeccc
Confidence 455677899999988889999999999999999999999998776 9999999999999999999999999999999999
Q ss_pred EEEehhHHHHHHhHHHHHHHHhcCCCccccccCcceeEeeCHHHHHHHHHHHHHHHhcCcEEEeeccCcccccccccccc
Q 001133 929 AVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGWICNIHTQGSRSFNKNLNLLQ 1008 (1145)
Q Consensus 929 yIIDQHAAHERILYERLlkkL~sgq~~SQQLLfpPQeLeLP~~E~qLLeE~keeLEkLGFeIEI~~egsesFGeNsnil~ 1008 (1145)
.++|||||+||++.|.+..+.... .+|.+|.++.+-+.++++|..|.+.++.|||++.+...+...|..|..++.
T Consensus 933 ~~~~qha~dek~~~q~~~~k~l~~-----s~li~~l~~kvlpm~~~ll~~Y~~~~~d~gw~~~~~~~~~s~~~~~~~~l~ 1007 (1142)
T KOG1977|consen 933 EENGQHASDEKQQAQGSGRKKLLS-----STLIPPLEIKVLPMQRRLLWCYHKNLEDLGWEFVFPDTSDSLVLVGKVPLC 1007 (1142)
T ss_pred cccccchhHHHHHhhhhccccccc-----cccccceeEEechhhHHHHHHHHHHhhhhceEEecccccccceecccccee
Confidence 999999999999999998876533 346667888888899999999999999999999987666666777777788
Q ss_pred ccceeEEEEeecccccCCCChhHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHHHhcCCC
Q 001133 1009 RQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSL 1088 (1145)
Q Consensus 1009 ~g~~tIiIRAVP~IL~~~l~edDL~ELLqeLlEtdgsstiP~~IeeLLASkACRSAIKfGDkLS~EEMeaLIrqLfaCen 1088 (1145)
+.+..+...++|+++.......++.+++.+|+++.|++++|..+.++|+++|||+||||||.|++.||-.||..|.+|.+
T Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~~e~i~~~~el~~t~gsstlP~tv~kVLnSkACrgAImFgD~L~~qEc~~lI~~Ls~c~l 1087 (1142)
T KOG1977|consen 1008 FVEREANELRRGRSTVTKSIVEEFIREQLELLQTTGSSTLPLTVQKVLNSKACRGAIMFGDGLSLQECCRLIEALSSCQL 1087 (1142)
T ss_pred cccccchhhccccccccchhHHHHHHHHHHHhccCCCCccCHHHHHHHhhhhhhhceeeCCccCHHHHHHHHHHHHhcCC
Confidence 88888889999999998888888889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHhhhchhHHHHhhccccchHHHHHHHhhhc
Q 001133 1089 CFQCAHGRPTTVPLVNLEALHKQIAQLNNSSELWHGLHRGEISLKRASRRLLTG 1142 (1145)
Q Consensus 1089 PfqCPHGRPTmVpLlSLeELEKkFkRl~~s~~~Wh~l~~~~~~~era~~rl~~~ 1142 (1145)
||+|+||||+|+||+++..|+|+++.. -.+..||++.+.+..++||..|++.+
T Consensus 1088 pFqCAHGRPsmvPladlk~l~kqi~~~-~~k~~~~~~~~r~~~~~~~~tr~~~~ 1140 (1142)
T KOG1977|consen 1088 PFQCAHGRPSMVPLADLKHLEKQIKPN-LTKLRKMAQAWRLFGKAECDTRQSLQ 1140 (1142)
T ss_pred chhhccCCCCccchhhHHHHHHHhhhh-hHHHHHHHHHHHHhhHhhhhhhhhhc
Confidence 999999999999999999999999987 55667999999999999999998764
No 2
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.2e-40 Score=388.37 Aligned_cols=192 Identities=23% Similarity=0.352 Sum_probs=172.4
Q ss_pred ccccCceEEEEEcCeEEEEEeCCeEEEEehhHHHHHHhHHHHHHHHhcCCCccccccCcceeEeeCHHHHHHHHHHHHHH
Q 001133 904 SCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQI 983 (1145)
Q Consensus 904 e~L~d~KVIGQVdnKYILaE~gdgLyIIDQHAAHERILYERLlkkL~sgq~~SQQLLfpPQeLeLP~~E~qLLeE~keeL 983 (1145)
..++.++++||++++|||++.+++|||||||||||||+||+|+..+.... .. |.|..|..+.+++.|...++++.+.|
T Consensus 447 ~~~~~~~~i~q~~~~yil~e~~~~L~lvDqhaa~Eri~ye~l~~~~~~~~-~~-Q~LliP~~~~l~~~e~~~~~~~~~~l 524 (638)
T COG0323 447 DVFPLGEAIGQVHGTYILAEHEDGLVLVDQHAAHERILYEKLKNELGNVG-EL-QPLLIPIRLELSPEEADVLEEHKEEL 524 (638)
T ss_pred cccccceEEEEecceEEEEEeCCCEEEEEhHHhHHHHHHHHHHHHhcccc-cc-cccccCeeeecCHHHHHHHHHHHHHH
Confidence 56678999999999999999999999999999999999999999987653 33 44556789999999999999999999
Q ss_pred HhcCcEEEeeccCccccccccccccccceeEEEEeecccccCCCChhHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhhh
Q 001133 984 KDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRG 1063 (1145)
Q Consensus 984 EkLGFeIEI~~egsesFGeNsnil~~g~~tIiIRAVP~IL~~~l~edDL~ELLqeLlEtdgsstiP~~IeeLLASkACRS 1063 (1145)
+++||.++ .||+ +.+.|++||.+++.......+.+++..+.+ +...........+++++|||+
T Consensus 525 ~~~G~~i~-------~~g~---------~~~~v~~vP~~l~~~~~~~~i~~l~~~~~~-~~~~~~~~~~~~~~a~~aC~~ 587 (638)
T COG0323 525 EKLGFEIE-------SFGE---------NSVAVRSVPAMLGKAEVQELIRELLDDLLE-GKLKDLKELLEELAATMACRS 587 (638)
T ss_pred HhcCEEEE-------EcCC---------ceEEEEecChhhcccchHHHHHHHHHHhhc-ccccchhHHHHHHHHHHHHHH
Confidence 99999998 4653 469999999999988888889999999987 544445566788999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcEEEECCChHHHHHHHHhh
Q 001133 1064 AIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQL 1115 (1145)
Q Consensus 1064 AIKfGDkLS~EEMeaLIrqLfaCenPfqCPHGRPTmVpLlSLeELEKkFkRl 1115 (1145)
|||+|+.|+.++|..|+++|..|+.|++|||||||++.+ +..+|+++|+|.
T Consensus 588 svk~~~~l~~~~m~~Ll~~~~~~~~~~~cpHGRp~~~~~-~~~~l~~~F~r~ 638 (638)
T COG0323 588 AVKAGRELSAEEMNALLRDLEACPNPWTCPHGRPTYIVL-SLAELERLFKRD 638 (638)
T ss_pred hhhcCCcCCHHHHHHHHHHHHhCCCccCCCCCCCceEee-chHHHHHhhCCC
Confidence 999999999999999999999999999999999999998 899999999883
No 3
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=100.00 E-value=1.5e-39 Score=377.44 Aligned_cols=192 Identities=27% Similarity=0.353 Sum_probs=168.1
Q ss_pred ccccCceEEEEEcCeEEEEEeCCeEEEEehhHHHHHHhHHHHHHHHhcCCCccccccCcceeEeeCHHHHHHHHHHHHHH
Q 001133 904 SCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQI 983 (1145)
Q Consensus 904 e~L~d~KVIGQVdnKYILaE~gdgLyIIDQHAAHERILYERLlkkL~sgq~~SQQLLfpPQeLeLP~~E~qLLeE~keeL 983 (1145)
+.+..+++|||++++|||++.+++|||||||||||||+||+|++++..+...+|++|+ |+.+.|++.++.+++++++.|
T Consensus 426 ~~~~~~~vigQv~~~YIl~e~~~~L~iIDQHAAhERI~yE~l~~~~~~~~~~~Q~LL~-P~~l~Ls~~e~~~l~~~~~~L 504 (617)
T PRK00095 426 DSFPLGYALGQLHGTYILAENEDGLYLVDQHAAHERLLYEQLKDKLAEVGLASQPLLI-PLVLELSEDEADRLEEHKELL 504 (617)
T ss_pred ccCcCceEeEEEcCEEEEEEeCCcEEEEEHHHHHHHHHHHHHHHHhccCCCccccccc-CeEEeeCHHHHHHHHHHHHHH
Confidence 4455678999999999999999999999999999999999999988654455566555 789999999999999999999
Q ss_pred HhcCcEEEeeccCccccccccccccccceeEEEEeecccccCCCChhHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhhh
Q 001133 984 KDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRG 1063 (1145)
Q Consensus 984 EkLGFeIEI~~egsesFGeNsnil~~g~~tIiIRAVP~IL~~~l~edDL~ELLqeLlEtdgsstiP~~IeeLLASkACRS 1063 (1145)
++|||+++ .||+ +++.|++||.++........+.++|+.|.+.... ...... ++++++|||+
T Consensus 505 ~~lGf~~e-------~fg~---------~si~I~~vP~~l~~~~~~~~l~ell~~l~~~~~~-~~~~~~-~~las~ACr~ 566 (617)
T PRK00095 505 ARLGLELE-------PFGP---------NSFAVREVPALLGQQELEELIRDLLDELAEEGDS-DTLKER-ELLATMACHG 566 (617)
T ss_pred HhCCcEEE-------EcCC---------CEEEEEecChhhcccCHHHHHHHHHHHHHhcCCc-chHHHH-HHHHHHHHHH
Confidence 99999998 4664 4899999999988776677888999988763322 222334 8999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcEEEECCChHHHHHHHHhh
Q 001133 1064 AIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQL 1115 (1145)
Q Consensus 1064 AIKfGDkLS~EEMeaLIrqLfaCenPfqCPHGRPTmVpLlSLeELEKkFkRl 1115 (1145)
|||+|+.|+.+||++||++|++|+.||+|||||||+++| +..||+|+|+|.
T Consensus 567 AIk~g~~Ls~~E~~~Ll~~L~~~~~P~~CPHGRPt~i~l-~~~elek~F~R~ 617 (617)
T PRK00095 567 AIRAGRRLTLEEMNALLRQLEATENPGTCPHGRPTYIEL-SLSDLEKLFKRI 617 (617)
T ss_pred hhhccCCCCHHHHHHHHHHHHhcccccCCCCCCeeEEEC-CHHHHHHHhCcC
Confidence 999999999999999999999999999999999999998 999999999984
No 4
>PF08676 MutL_C: MutL C terminal dimerisation domain; InterPro: IPR014790 MutL and MutS are key components of the DNA repair machinery that corrects replication errors []. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signalling complex for repair. The N-terminal region of MutL contains the ATPase domain and the C-terminal is involved in dimerisation []. ; GO: 0005524 ATP binding, 0006298 mismatch repair; PDB: 3NCV_B 1X9Z_B 3GAB_C 3KDK_A 3KDG_A.
Probab=99.97 E-value=6.1e-30 Score=244.92 Aligned_cols=143 Identities=35% Similarity=0.453 Sum_probs=118.7
Q ss_pred CceEEEEEcCeEEEEEeCCeEEEEehhHHHHHHhHHHHHHHHhcCCCccccccCcceeEeeCHHHHHHHHHHHHHHHhcC
Q 001133 908 DAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWG 987 (1145)
Q Consensus 908 d~KVIGQVdnKYILaE~gdgLyIIDQHAAHERILYERLlkkL~sgq~~SQQLLfpPQeLeLP~~E~qLLeE~keeLEkLG 987 (1145)
.+++|||++++|||++.+++||+||||||||||+||+|++++..+. .+|++| .|+.+.+++.+...++++.+.|++||
T Consensus 2 ~~~vlgq~~~~yil~~~~~~L~liDqHAAhERi~~E~l~~~~~~~~-~~q~Ll-~P~~~~ls~~e~~~l~~~~~~L~~~G 79 (144)
T PF08676_consen 2 LLKVLGQLDNKYILAESEDGLYLIDQHAAHERILYEKLLKQLEEGE-QSQPLL-FPIELELSPQEAELLEENKEELEKLG 79 (144)
T ss_dssp T-EEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHCCHCS--EEEEE-EEEEEE--HHHHHHHHHHHHHHHHTT
T ss_pred ceeeHhHhCCEEEEEEeCCCEEEEEHHHHHHHHHHHHHHHhhccCC-CceecC-CCccCCCCHHHHHHHHHHHHHHHhCC
Confidence 4799999999999999999999999999999999999999987665 445555 47899999999999999999999999
Q ss_pred cEEEeeccCccccccccccccccceeEEEEeecccccCCCChhHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhhhhccc
Q 001133 988 WICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRGAIMF 1067 (1145)
Q Consensus 988 FeIEI~~egsesFGeNsnil~~g~~tIiIRAVP~IL~~~l~edDL~ELLqeLlEtdgsstiP~~IeeLLASkACRSAIKf 1067 (1145)
|+++. || ++++.|++||.++........+.+++..+.+... . +..+.++++++|||+|||+
T Consensus 80 f~~~~-------~~---------~~~~~v~~vP~~l~~~~~~~~l~~ll~~l~~~~~--~-~~~~~~~~~~~AC~~Aik~ 140 (144)
T PF08676_consen 80 FEIEE-------FG---------ENSIIVRSVPAILREQDLEELLRELLEELQEKEE--S-PEIIEELLASMACRSAIKA 140 (144)
T ss_dssp -EEEE-------ES---------TTEEEEEEEECCCTTSSHHHHHHHHHHHHCTCSS----CCCHHHHHHHHHTTSSSSS
T ss_pred eEEEE-------ec---------CCEEEEEEeCcccccccHHHHHHHHHHHHHhCCC--c-HHHHHHHHHHHHHHHhhcC
Confidence 99983 55 4589999999999988777888999998876542 2 5678899999999999999
Q ss_pred CCCC
Q 001133 1068 GDSL 1071 (1145)
Q Consensus 1068 GDkL 1071 (1145)
||+|
T Consensus 141 g~~L 144 (144)
T PF08676_consen 141 GDKL 144 (144)
T ss_dssp S---
T ss_pred CCCC
Confidence 9986
No 5
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=99.94 E-value=2.9e-27 Score=273.37 Aligned_cols=190 Identities=27% Similarity=0.393 Sum_probs=167.1
Q ss_pred CcCcccccCceEEEEEcCeEEEEEeCCeEEEEehhHHHHHHhHHHHHHHHhcCCCccccccCcceeEeeCHHHHHHHHHH
Q 001133 900 SINKSCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNF 979 (1145)
Q Consensus 900 rISKe~L~d~KVIGQVdnKYILaE~gdgLyIIDQHAAHERILYERLlkkL~sgq~~SQQLLfpPQeLeLP~~E~qLLeE~ 979 (1145)
.++|.+|..+++|||++.+||++..+..|+||||||++|..+||+|++...-. .|.|..|+.|.+++.+-..+.++
T Consensus 480 ~v~k~df~~meiigqfNlgFIi~~l~~dlfIvdqha~dEk~Nfe~l~~~~~L~----~Q~l~~P~~l~ls~~nE~vl~d~ 555 (672)
T KOG1978|consen 480 EVAKADFSRMEIIGQFNLGFIIVKLEKDLFIVDQHASDEKRNFERLQSTTVLK----AQPLICPQALDLSAINEMVLLDN 555 (672)
T ss_pred cccccchhhcceeeeccccceeeeccCceEEeccchhhhhhhHHHHHHhcccc----cccccCccccccCcccceeehhh
Confidence 47888999999999999999999999999999999999999999999876532 34566689999998887888899
Q ss_pred HHHHHhcCcEEEeeccCccccccccccccccceeEEEEeecccccCCCChhHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Q 001133 980 AEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSK 1059 (1145)
Q Consensus 980 keeLEkLGFeIEI~~egsesFGeNsnil~~g~~tIiIRAVP~IL~~~l~edDL~ELLqeLlEtdgsstiP~~IeeLLASk 1059 (1145)
.+.|++.||.+++. .+ +..+..+.+.++|......++..++.|+|..|.+.++..-.|..+..++|++
T Consensus 556 l~~f~knGF~~~~~--~n----------~~~~~~~~l~~~p~skn~~fg~~dl~Eli~~l~~~~~~~~rp~~vr~m~as~ 623 (672)
T KOG1978|consen 556 LPLFEKNGFKVKID--EN----------APDGKRVRLLSVPVSKNQTFGVSDLKELISVLKNFPEETYRPSKVRSMIASK 623 (672)
T ss_pred hHHHHhcCceEeec--CC----------CcccceeeecccccccccccCHHHHHHHHHHHhhCCCcEeehHHHHHHHHHH
Confidence 99999999999863 11 1234578899999999999999999999999998766555567788899999
Q ss_pred hhhhhcccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcEEEECCCh
Q 001133 1060 ACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNL 1105 (1145)
Q Consensus 1060 ACRSAIKfGDkLS~EEMeaLIrqLfaCenPfqCPHGRPTmVpLlSL 1105 (1145)
|||.+||.|+.|+..+|+.+|..|+..+.||.||||||||..|+.+
T Consensus 624 AcR~Svmig~~L~~~dm~~iv~~L~~l~~pwnCpHGRPTmrhL~~l 669 (672)
T KOG1978|consen 624 ACRSSVMIGDPLSKDDMTRIVRSLAELEHPWNCPHGRPTMRHLCEL 669 (672)
T ss_pred HhhhhhhcccccCHHHHHHHHHHHHHhcCCCCCCCCchhHHHHhhc
Confidence 9999999999999999999999999999999999999999988544
No 6
>smart00853 MutL_C MutL C terminal dimerisation domain. MutL and MutS are key components of the DNA repair machinery that corrects replication errors. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signaling complex for repair. The N terminal region of MutL contains the ATPase domain and the C terminal is involved in dimerisation.
Probab=99.91 E-value=2.7e-23 Score=196.45 Aligned_cols=134 Identities=32% Similarity=0.367 Sum_probs=111.2
Q ss_pred ceEEEEEcCeEEEEEeCCeEEEEehhHHHHHHhHHHHHHHHhcCCC-ccccccCcceeEeeCHHHHHHHHHHHHHHHhcC
Q 001133 909 AKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEG-KSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWG 987 (1145)
Q Consensus 909 ~KVIGQVdnKYILaE~gdgLyIIDQHAAHERILYERLlkkL~sgq~-~SQQLLfpPQeLeLP~~E~qLLeE~keeLEkLG 987 (1145)
++++||++++||+++.+++|+|||||||||||+||+|++.+..+.. .+|++| .|..+.+++.++.+++++.+.|++||
T Consensus 2 ~~~l~qv~~~yil~~~~~~l~liDqhaA~ERi~~e~l~~~~~~~~~~~~Q~Ll-~P~~i~l~~~e~~~l~~~~~~l~~~G 80 (136)
T smart00853 2 GRVLGQVHGTYILAESEDGLVLIDQHAAHERILYEQLKAKLQAGLLEKSQPLL-IPVILELSPEEAALLEEHQELLARLG 80 (136)
T ss_pred ccEEEEEcCEEEEEEcCCCEEEEEhHHHHHHHHHHHHHHHHhcCCCccccccC-CCEEEEcCHHHHHHHHHHHHHHHHcC
Confidence 5799999999999999999999999999999999999998755443 245555 57899999999999999999999999
Q ss_pred cEEEeeccCccccccccccccccceeEEEEeecccccCCCChhHHHHHHHHHHhcCCCCCChHHHHHHHHHHh
Q 001133 988 WICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKA 1060 (1145)
Q Consensus 988 FeIEI~~egsesFGeNsnil~~g~~tIiIRAVP~IL~~~l~edDL~ELLqeLlEtdgsstiP~~IeeLLASkA 1060 (1145)
|++++ || ++++.|++||.++........+.+++..+.... ....+..+.++++++|
T Consensus 81 f~~~~-------~~---------~~~~~i~~vP~~l~~~~~~~~l~~ll~~l~~~~-~~~~~~~~~~~la~~A 136 (136)
T smart00853 81 FELEI-------FG---------GQSVILRSVPALLRQQNLQELIPELLDLLAEGG-STSLPQLVEALLASLA 136 (136)
T ss_pred eEEEc-------cC---------CCEEEEEeECccccCcCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHhhC
Confidence 99983 55 347999999999887777778889998887633 2345566667788775
No 7
>PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL. This domain functions in promoting dimerisation []. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1B62_A 1NHJ_A 1BKN_B 1NHH_A 1B63_A 1NHI_A 3NA3_A 1EA6_A 1H7U_A 1H7S_B ....
Probab=99.76 E-value=6.5e-19 Score=166.53 Aligned_cols=76 Identities=29% Similarity=0.350 Sum_probs=68.1
Q ss_pred ccccccccccccHHHHHHHHHhhccCCCCccccCCCccCCCCCCCCCceEEEEeecCCCcceeeecCCcceEEecCchhH
Q 001133 2 SDINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPV 81 (1145)
Q Consensus 2 ~fVN~RlV~kt~iHkaln~l~rsli~~~s~~~~~~~~~~krs~~~~~PvyVLnl~CppseyDVnvhPaKTlVeFkDWd~V 81 (1145)
.|||+|+|..+.++++|+.+|+..++. +.||+|||+|+|||++||||+||+||+|+|+||+.|
T Consensus 44 ifVN~R~V~~~~l~~~I~~~y~~~~~~-----------------~~~P~~vL~i~~p~~~vDVNvhP~K~eV~f~~e~~i 106 (119)
T PF01119_consen 44 IFVNGRPVENKALSKAINEAYRERLPK-----------------GRYPIFVLFIEIPPSEVDVNVHPAKREVRFRDEDEI 106 (119)
T ss_dssp EEETTEEE--HHHHHHHHHHHHCTTCT-----------------TSB-EEEEEEE-SGGGEEETSSTTTT-EEETTHHHH
T ss_pred EEeCCCeEeChHHHHHHHHHHhhcccC-----------------CCCceEEEEEEcchHHccccccccceEEEecCHHHH
Confidence 699999999999999999999988888 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 001133 82 LAFIERAIRSAWM 94 (1145)
Q Consensus 82 l~~ve~aVr~~l~ 94 (1145)
+.+|+++|+++|.
T Consensus 107 ~~~i~~~i~~~L~ 119 (119)
T PF01119_consen 107 LNLIEEAIREALS 119 (119)
T ss_dssp HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999984
No 8
>cd03486 MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH3 (MutL homologue 3). MLH3 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with MLH3. The MLH1-MLH3 complex plays a role in meiosis. A role for hMLH1-hMLH3 in DNA mismatch repair (MMR) has not been established. It has been suggested that hMLH3 may be a low risk gene for colorectal cancer; however there is little evidence to support it having a role in classical HNPCC.
Probab=99.75 E-value=1.4e-18 Score=169.50 Aligned_cols=87 Identities=31% Similarity=0.532 Sum_probs=74.4
Q ss_pred ccccccccccccHHHHHHHHHhh--------ccCCCCccccCCCccCCCCCCCCCceEEEEeecCCCcceeeecCCcceE
Q 001133 2 SDINSRYVCKGPIHKLLNHLAAS--------FDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHV 73 (1145)
Q Consensus 2 ~fVN~RlV~kt~iHkaln~l~rs--------li~~~s~~~~~~~~~~krs~~~~~PvyVLnl~CppseyDVnvhPaKTlV 73 (1145)
+|||+|+|..+.|+++|+.+|++ .++. ..+++..+...+.||+|||||+|||++||||+||+||+|
T Consensus 47 ifVN~R~v~~~~l~~aI~~~y~~~~~~~~~~~~~~------~~~~~~~~~~~~~~P~~vL~i~~p~~~vDvNvhP~K~eV 120 (141)
T cd03486 47 IYVNGRLYLKTRFHKLINKLFRKTSAVAKNKSSPQ------SKSSRRGKRSQESYPVFVLNITCPASEYDLSQEPSKTII 120 (141)
T ss_pred EEECCEEechHHHHHHHHHHHhhcccccccccccc------ccccccccCCccCCCEEEEEEecCchHheeeeCCceeEE
Confidence 69999999999999999999998 3322 111122233457999999999999999999999999999
Q ss_pred EecCchhHHHHHHHHHHHHHh
Q 001133 74 VFKDWEPVLAFIERAIRSAWM 94 (1145)
Q Consensus 74 eFkDWd~Vl~~ve~aVr~~l~ 94 (1145)
+|+||+.|+.+|+++|+.||.
T Consensus 121 ~f~~~~~i~~~i~~~i~~~L~ 141 (141)
T cd03486 121 EFKDWKTLLPLILEVVKSFLK 141 (141)
T ss_pred EecChHHHHHHHHHHHHHHhC
Confidence 999999999999999999984
No 9
>cd00782 MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to human MLH1, hPMS2, hPMS1, hMLH3 and E. coli MutL, MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking either hMLH1 or hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot synd
Probab=99.74 E-value=2.8e-18 Score=160.99 Aligned_cols=76 Identities=34% Similarity=0.440 Sum_probs=72.9
Q ss_pred CccccccccccccHHHHHHHHHhhccCCCCccccCCCccCCCCCCCCCceEEEEeecCCCcceeeecCCcceEEecCchh
Q 001133 1 MSDINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEP 80 (1145)
Q Consensus 1 ~~fVN~RlV~kt~iHkaln~l~rsli~~~s~~~~~~~~~~krs~~~~~PvyVLnl~CppseyDVnvhPaKTlVeFkDWd~ 80 (1145)
+.|||+|+|..+.++++|+.+|++.++. +.||+|+|+|+|||..||||+||+||+|+|+||+.
T Consensus 47 ~~fVN~R~v~~~~l~~ai~~~y~~~~~~-----------------~~~P~~~L~i~~~~~~~DvNvhP~K~eV~f~~~~~ 109 (122)
T cd00782 47 FLFVNGRPVRDKLLSKAINEAYRSYLPK-----------------GRYPVFVLNLELPPELVDVNVHPTKREVRFSDEEE 109 (122)
T ss_pred EEEECCeEecCHHHHHHHHHHHHHhCcC-----------------CCCcEEEEEEEeChhheeeeeCCCCCEEEecCHHH
Confidence 3699999999999999999999998887 69999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 001133 81 VLAFIERAIRSAW 93 (1145)
Q Consensus 81 Vl~~ve~aVr~~l 93 (1145)
|+.+|+++|+++|
T Consensus 110 i~~~i~~~v~~~l 122 (122)
T cd00782 110 VLELIREALRSAL 122 (122)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999886
No 10
>cd03485 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. PMS1 forms a heterodimer with MLH1. The MLH1-PMS1 complex functions in meiosis. Loss of yMLH2 results in a small but significant decrease in spore viability and a significant increase in gene conversion frequencies. A role for hMLH1-hPMS1 in DNA mismatch repair has not been established. Mutation in hMLH1 accounts for a large fraction of Lynch syndrome (HNPCC) families, however there is no convincing evidence to support hPMS1 having a role in HNPCC predisposition.
Probab=99.72 E-value=6.1e-18 Score=162.97 Aligned_cols=80 Identities=31% Similarity=0.458 Sum_probs=73.1
Q ss_pred Ccccccccccc-ccHHHHHHHHHhhccCCCCccccCCCccCCCCCCCCCceEEEEeecCCCcceeeecCCcceEEecCch
Q 001133 1 MSDINSRYVCK-GPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWE 79 (1145)
Q Consensus 1 ~~fVN~RlV~k-t~iHkaln~l~rsli~~~s~~~~~~~~~~krs~~~~~PvyVLnl~CppseyDVnvhPaKTlVeFkDWd 79 (1145)
++|||+|+|.. +.++|+|+++|++++.+ +..++||+|+|||+|||+.|||||||+|++|+|+|++
T Consensus 52 ~~fVN~R~v~~~~~l~k~i~~~y~~~~~~--------------~~~~~~P~~~L~i~~~~~~vDVNVhP~K~eV~f~~e~ 117 (132)
T cd03485 52 FISVNSRPVSLGKDIGKLLRQYYSSAYRK--------------SSLRRYPVFFLNILCPPGLVDVNIEPDKDDVLLQNKE 117 (132)
T ss_pred EEEECCeecccchHHHHHHHHHHHHHhcc--------------ccccCCCEEEEEEEcCCCceeeccCCccCEEEEcChH
Confidence 36999999999 99999999999998822 1127999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHh
Q 001133 80 PVLAFIERAIRSAWM 94 (1145)
Q Consensus 80 ~Vl~~ve~aVr~~l~ 94 (1145)
.|+.+|+++|+++|.
T Consensus 118 ~v~~~i~~~v~~~~~ 132 (132)
T cd03485 118 AVLQAVENLLESLYG 132 (132)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999999873
No 11
>cd03482 MutL_Trans_MutL MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL. EcMutL belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from the ATP-binding site to the DNA breakage/reunion regions of the enzymes. It has been suggested that during initiation of DNA mismatch repair in E. coli, the mismatch recognition protein MutS recruits MutL in the presence of ATP. The MutS(ATP)-MutL ternary complex formed, then recruits the latent endonuclease MutH. Prokaryotic MutS and MutL are homodimers.
Probab=99.71 E-value=8.5e-18 Score=160.89 Aligned_cols=76 Identities=26% Similarity=0.310 Sum_probs=73.8
Q ss_pred ccccccccccccHHHHHHHHHhhccCCCCccccCCCccCCCCCCCCCceEEEEeecCCCcceeeecCCcceEEecCchhH
Q 001133 2 SDINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPV 81 (1145)
Q Consensus 2 ~fVN~RlV~kt~iHkaln~l~rsli~~~s~~~~~~~~~~krs~~~~~PvyVLnl~CppseyDVnvhPaKTlVeFkDWd~V 81 (1145)
+|||+|+|....|+++|+.+|+++++. +.||+|||+|+|||..||||+||+|++|+|++|+.|
T Consensus 48 ifVN~R~V~~~~l~~ai~~~y~~~~~~-----------------~~~P~~vL~l~ipp~~vDvNVhP~K~eV~f~~e~~i 110 (123)
T cd03482 48 FYVNGRMVRDKLISHAVRQAYSDVLHG-----------------GRHPAYVLYLELDPAQVDVNVHPAKHEVRFRDSRLV 110 (123)
T ss_pred EEEcCcEECChHHHHHHHHHHHHhccC-----------------CCCcEEEEEEEcChHheeeccCCCccEEEECCHHHH
Confidence 699999999999999999999999988 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 001133 82 LAFIERAIRSAWM 94 (1145)
Q Consensus 82 l~~ve~aVr~~l~ 94 (1145)
+.+|.++|+++|.
T Consensus 111 ~~~i~~~i~~~L~ 123 (123)
T cd03482 111 HDFIYHAVKKALA 123 (123)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999983
No 12
>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1). This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families.
Probab=99.70 E-value=1.7e-17 Score=159.60 Aligned_cols=76 Identities=22% Similarity=0.312 Sum_probs=74.0
Q ss_pred CccccccccccccHHHHHHHHHhhccCCCCccccCCCccCCCCCCCCCceEEEEeecCCCcceeeecCCcceEEecCchh
Q 001133 1 MSDINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEP 80 (1145)
Q Consensus 1 ~~fVN~RlV~kt~iHkaln~l~rsli~~~s~~~~~~~~~~krs~~~~~PvyVLnl~CppseyDVnvhPaKTlVeFkDWd~ 80 (1145)
+.|||+|+|..+.|.+||+.+|++++++ +.||++||||++||+.|||||||+|++|+|+|.+.
T Consensus 51 ~~fVNgR~V~~~~l~~aI~~~Y~~~l~~-----------------~~~P~~~L~i~i~p~~vDVNVHP~K~eV~f~~e~~ 113 (127)
T cd03483 51 ILFINNRLVECSALRRAIENVYANYLPK-----------------GAHPFVYLSLEIPPENVDVNVHPTKREVHFLNEEE 113 (127)
T ss_pred EEEEcCCEecCHHHHHHHHHHHHHhCcC-----------------CCccEEEEEEEeChHHeeeccCCCccEEEecCHHH
Confidence 4699999999999999999999999999 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 001133 81 VLAFIERAIRSAW 93 (1145)
Q Consensus 81 Vl~~ve~aVr~~l 93 (1145)
|+.+|.++|+++|
T Consensus 114 i~~~i~~~v~~~L 126 (127)
T cd03483 114 IIERIQKLVEDKL 126 (127)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999987
No 13
>cd03484 MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2). hPSM2 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to yeast PMS1. The yeast MLH1-PMS1 and the human MLH1-PMS2 heterodimers play a role in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Cells lacking hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hPMS2 causes predisposition to HPNCC and Turcot syndrome.
Probab=99.62 E-value=7.5e-16 Score=150.98 Aligned_cols=74 Identities=30% Similarity=0.495 Sum_probs=71.4
Q ss_pred ccccccccccccHHHHHHHHHhhccCCCCccccCCCccCCCCCCCCCceEEEEeecCCCcceeeecCCcceEEecCchhH
Q 001133 2 SDINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPV 81 (1145)
Q Consensus 2 ~fVN~RlV~kt~iHkaln~l~rsli~~~s~~~~~~~~~~krs~~~~~PvyVLnl~CppseyDVnvhPaKTlVeFkDWd~V 81 (1145)
.|||+|+|....|.++|+.+|++++ + ++||+|||+|+|||+.|||||||+|++|.|.+++.|
T Consensus 68 ~fVN~R~V~~~~l~~aI~~~y~~~~-~-----------------~~~P~~vL~i~vp~~~vDvNVhP~K~eV~f~~e~~i 129 (142)
T cd03484 68 FYINGRPVDLKKVAKLINEVYKSFN-S-----------------RQYPFFILNISLPTSLYDVNVTPDKRTVLLHDEDRL 129 (142)
T ss_pred EEECCeecCCHHHHHHHHHHHHHhc-C-----------------cCCcEEEEEEEeCCcceeeeeCCccCEEEEcChHHH
Confidence 6999999999999999999999877 4 699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 001133 82 LAFIERAIRSAW 93 (1145)
Q Consensus 82 l~~ve~aVr~~l 93 (1145)
+.+|+++|+++|
T Consensus 130 ~~~i~~~v~~~~ 141 (142)
T cd03484 130 IDTLKTSLSELF 141 (142)
T ss_pred HHHHHHHHHHHh
Confidence 999999999998
No 14
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.45 E-value=7.4e-14 Score=164.08 Aligned_cols=78 Identities=24% Similarity=0.294 Sum_probs=75.3
Q ss_pred ccccccccccccHHHHHHHHHhhccCCCCccccCCCccCCCCCCCCCceEEEEeecCCCcceeeecCCcceEEecCchhH
Q 001133 2 SDINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPV 81 (1145)
Q Consensus 2 ~fVN~RlV~kt~iHkaln~l~rsli~~~s~~~~~~~~~~krs~~~~~PvyVLnl~CppseyDVnvhPaKTlVeFkDWd~V 81 (1145)
.|||+|+|....|+++|+.+|++++++ ++||+|||||+|||+.|||||||+|++|+|+||+.|
T Consensus 251 ~fvN~R~v~~~~l~~ai~~~y~~~~~~-----------------~~~P~~~l~i~~~~~~~DvNvhP~K~ev~f~~e~~i 313 (617)
T PRK00095 251 LFVNGRYVRDKLLNHAIRQAYHDLLPR-----------------GRYPAFVLFLELDPHQVDVNVHPAKHEVRFRDERLV 313 (617)
T ss_pred EEECCcEecCHHHHHHHHHHHHHhccC-----------------CCCcEEEEEEEeChHhcccccCCCcCEEEeCCHHHH
Confidence 699999999999999999999999988 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 001133 82 LAFIERAIRSAWMKK 96 (1145)
Q Consensus 82 l~~ve~aVr~~l~~~ 96 (1145)
+.+|.++|+++|...
T Consensus 314 ~~~i~~~i~~~l~~~ 328 (617)
T PRK00095 314 HDLIVQAIQEALAQS 328 (617)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999999653
No 15
>cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. The GyrB dimerizes in response to ATP binding, and is homologous to the N-terminal half of eukaryotic Topo II and the ATPase fragment of MutL. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. Included in this group are proteins similar to human MLH1 and PMS2. MLH1 forms a heterodimer with PMS2 which functions in meiosis and in DNA mismatch
Probab=98.92 E-value=6.4e-10 Score=99.71 Aligned_cols=56 Identities=29% Similarity=0.291 Sum_probs=52.4
Q ss_pred ccccccccc-cccHHHHHHHHHhhcc---CCCCccccCCCccCCCCCCCCCceEEEEeecCCCcceeeecCCcceEE
Q 001133 2 SDINSRYVC-KGPIHKLLNHLAASFD---CSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVV 74 (1145)
Q Consensus 2 ~fVN~RlV~-kt~iHkaln~l~rsli---~~~s~~~~~~~~~~krs~~~~~PvyVLnl~CppseyDVnvhPaKTlVe 74 (1145)
.|||+|++. ...++++|+.+|+..+ +. +.||+|||+++||++.+|||+||+|++|.
T Consensus 48 ~fvN~r~v~~~~~~~~~i~~~~~~~~~~~~~-----------------~~~p~~vl~i~~~~~~~d~nv~p~K~~v~ 107 (107)
T cd00329 48 SFVNGRPVREGGTHVKAVREAYTRALNGDDV-----------------RRYPVAVLSLKIPPSLVDVNVHPTKEEVR 107 (107)
T ss_pred EEEcCeEEcCCHHHHHHHHHHHHHHhcccCC-----------------CCCCEEEEEEEeChHHeeeCCCCCccccC
Confidence 699999999 9999999999999887 44 69999999999999999999999999984
No 16
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=98.42 E-value=3.1e-07 Score=107.38 Aligned_cols=86 Identities=21% Similarity=0.193 Sum_probs=79.9
Q ss_pred ccccccccccccHHHHHHHHHhhccCCCCccccCCCccCCCCCCCCCceEEEEeecCCCcceeeecCCcceEEecCchhH
Q 001133 2 SDINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPV 81 (1145)
Q Consensus 2 ~fVN~RlV~kt~iHkaln~l~rsli~~~s~~~~~~~~~~krs~~~~~PvyVLnl~CppseyDVnvhPaKTlVeFkDWd~V 81 (1145)
.|||+|+|..+.+-++|+..|...+++ +.+|+.-|-|..+|..|||||||+|.+|.|-+.+.|
T Consensus 262 lFIN~RLVes~~Lr~ale~VYa~yLpk-----------------~~~pFvYLsL~i~p~~vDVNVHPTK~eV~FL~qEeI 324 (694)
T KOG1979|consen 262 LFINGRLVESDELRHALEEVYAAYLPK-----------------GHHPFVYLSLNIDPENVDVNVHPTKREVHFLNQEEI 324 (694)
T ss_pred EEEcCcEeehHHHHHHHHHHHHHhcCC-----------------CCCceEEEEEecCHHHcccccCCCcceeEeecHHHH
Confidence 599999999999999999999999999 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCccCcccc
Q 001133 82 LAFIERAIRSAWMKKIAHDSFDV 104 (1145)
Q Consensus 82 l~~ve~aVr~~l~~~~~~~s~~~ 104 (1145)
..-|.+-|.+-|...+..-.|..
T Consensus 325 ie~I~~~ie~~L~~~d~er~~~~ 347 (694)
T KOG1979|consen 325 IERICQQIEERLSALDTERTFLK 347 (694)
T ss_pred HHHHHHHHHHHHhccCcccchhh
Confidence 99999999999977666655544
No 17
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.36 E-value=6.4e-05 Score=82.36 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=28.1
Q ss_pred CCCCceEEEEeecCCCcceeeecCCcceEE
Q 001133 45 SQACPAYLLNLRCPHSLYDLTFDPLKTHVV 74 (1145)
Q Consensus 45 ~~~~PvyVLnl~CppseyDVnvhPaKTlVe 74 (1145)
.+.||+|||+|+|||+.||||+||+|++|+
T Consensus 283 ~~~~P~~vL~i~~p~~~iDvNv~P~K~eV~ 312 (312)
T TIGR00585 283 KGQYPVFVLNLEIDPELVDVNVHPDKKEVR 312 (312)
T ss_pred CCCCcEEEEEEEEChHHcccCCCCCchhhC
Confidence 468999999999999999999999999984
No 18
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=97.04 E-value=0.0011 Score=79.69 Aligned_cols=73 Identities=21% Similarity=0.278 Sum_probs=65.8
Q ss_pred CccccccccccccHHHHHHHHHhhccCCCCccccCCCccCCCCCCCCCceEEEEeecCCCcceeeecCCcceEEecCchh
Q 001133 1 MSDINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEP 80 (1145)
Q Consensus 1 ~~fVN~RlV~kt~iHkaln~l~rsli~~~s~~~~~~~~~~krs~~~~~PvyVLnl~CppseyDVnvhPaKTlVeFkDWd~ 80 (1145)
|.|||+|.|--.+|.+++++.|...-.. .| |||..|.+.+||||.|.|+.|-|.+...
T Consensus 247 f~fIn~Rpv~~~~i~~~inevy~~~~~~------------------q~----l~i~V~~~~iDvNvtPDK~~vll~~e~~ 304 (672)
T KOG1978|consen 247 FIFINRRPVFPSDICRVINEVYKLYNER------------------QY----LFLDVPEGCIDVNVTPDKRQVLLSNERS 304 (672)
T ss_pred eeeecCccCCHHHHHHHHHHHhhhhccc------------------cc----eeeeccccceeeeeCCCcceeeccchHH
Confidence 5799999999999999999999543333 33 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 001133 81 VLAFIERAIRSAWMK 95 (1145)
Q Consensus 81 Vl~~ve~aVr~~l~~ 95 (1145)
|+..++..+-.+...
T Consensus 305 vl~~l~~~l~~~~~s 319 (672)
T KOG1978|consen 305 VLFSLRNSLVDFYNS 319 (672)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999873
No 19
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=64.28 E-value=33 Score=42.70 Aligned_cols=51 Identities=14% Similarity=0.134 Sum_probs=44.5
Q ss_pred cCcccccCceEEEEEcCeEEEEEeCCeEEEEehhHHHHHHhHHHHHHHHhc
Q 001133 901 INKSCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLS 951 (1145)
Q Consensus 901 ISKe~L~d~KVIGQVdnKYILaE~gdgLyIIDQHAAHERILYERLlkkL~s 951 (1145)
.-++.|.+..++|-++.++++++.+-.||++|---.-+-.-|..++..+.+
T Consensus 465 ~l~e~~~n~~yVG~vd~~~alvQh~t~Ly~~d~~~ls~ElfYQi~i~dF~N 515 (694)
T KOG1979|consen 465 VLTEMFRNLSYVGVVDERTALVQHGTSLYLCDTVSLSKELFYQILITDFGN 515 (694)
T ss_pred HHHHHHHhcceeeeechhhhhhhcCceEEEechHHHHHHHHHHHHHHHhcc
Confidence 335678889999999999999999999999999998888888888887753
No 20
>PF02742 Fe_dep_repr_C: Iron dependent repressor, metal binding and dimerisation domain; InterPro: IPR001367 The diphtheria toxin repressor protein (DTXR) is a member of this group []. In Corynebacterium diphtheriae where it has been studied in some detail this protein acts as an iron-binding repressor of dipheteria toxin gene expression and may serve as a global regulator of gene expression. The N terminus may be involved in iron binding and may associate with the Tox operator. Binding of DTXR to Tox operator requires a divalent metal ion such as cobalt, ferric, manganese and nickel whereas zinc shows weak activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005506 iron ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2X4H_D 2H09_A 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A 2F5D_A 3R61_A ....
Probab=61.42 E-value=5.8 Score=35.58 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=28.6
Q ss_pred HhhhhhcccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcEE
Q 001133 1059 KACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTT 1099 (1145)
Q Consensus 1059 kACRSAIKfGDkLS~EEMeaLIrqLfaCenPfqCPHGRPTm 1099 (1145)
.|+..|-+.-..|+++-...|.+-| .+|-.||||.|+.
T Consensus 32 ~a~~~A~~iEH~is~e~~~~l~~~l---~~~~~~P~~~~ip 69 (71)
T PF02742_consen 32 EAEEEACRIEHVISPETIERLCKFL---GFPETCPHGNPIP 69 (71)
T ss_dssp HHHHHHHHHGCCS-HHHHHHHHHHT---TCTSBETTSCBST
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHh---cCCCcCcCCCCCC
Confidence 4566666667899999888887766 5688999999964
No 21
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=45.88 E-value=20 Score=37.16 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=30.2
Q ss_pred HHhhhhhcccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcE
Q 001133 1058 SKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPT 1098 (1145)
Q Consensus 1058 SkACRSAIKfGDkLS~EEMeaLIrqLfaCenPfqCPHGRPT 1098 (1145)
..||+-|-+.-..++.+-+.+|.+-|. .|-.||||+|+
T Consensus 95 ~~~~~ea~~leh~~s~~~~~rl~~~l~---~~~~~p~g~~i 132 (154)
T COG1321 95 EEAHEEAEGLEHALSDETAERLDELLG---FPTRCPHGKPI 132 (154)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhC---CCccCCCCCcc
Confidence 357777777788899888887766654 48999999998
No 22
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=40.44 E-value=26 Score=43.96 Aligned_cols=37 Identities=11% Similarity=-0.038 Sum_probs=33.9
Q ss_pred ccccccHHHHHHHHHhhccCCCCccccCCCccCCCCCCCCCceEEEEeecCCCc
Q 001133 8 YVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSL 61 (1145)
Q Consensus 8 lV~kt~iHkaln~l~rsli~~~s~~~~~~~~~~krs~~~~~PvyVLnl~Cppse 61 (1145)
+|++..+.++|..+|+.+++. +.||+++|||++||-.
T Consensus 272 ~V~~~~l~~ai~~ay~~~l~~-----------------~~~P~~~L~l~i~~~~ 308 (659)
T PRK14867 272 ELEEYVLRDLLLENYRDSVFW-----------------DTVVSCYLNFDFTKYF 308 (659)
T ss_pred EEccHHHHHHHHHHHhhcccC-----------------CCcceEEEEEEeCccc
Confidence 688889999999999999999 8999999999999854
No 23
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=29.36 E-value=55 Score=31.79 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=41.0
Q ss_pred CcceeeecCCcceEEecCchhHHHHHHHHHHHHHhh--cCccCcccccccccccC
Q 001133 60 SLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMK--KIAHDSFDVDMLEDAEL 112 (1145)
Q Consensus 60 seyDVnvhPaKTlVeFkDWd~Vl~~ve~aVr~~l~~--~~~~~s~~~~~~~~~~~ 112 (1145)
+.+..-++|--|.|| -|||.|+.+|+++.+..... .+....+..|.+-|.+.
T Consensus 31 sGl~y~~~pm~T~IE-Ge~dev~~~i~~~~e~~~~~G~~Rv~t~ikid~R~dk~~ 84 (97)
T TIGR00106 31 SGLKYELHPMGTLIE-GDLDELFEAIKAIHEAVLEKGSDRVYTSIKIDTRTDKHR 84 (97)
T ss_pred cCCCeEecCCccEEe-cCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEecCCCCC
Confidence 456778999999999 78999999999999999865 56665666666665444
Done!