Query 001133
Match_columns 1145
No_of_seqs 227 out of 1115
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 12:43:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kdg_A DNA mismatch repair pro 100.0 2.7E-47 9.2E-52 384.8 20.3 193 904-1115 4-196 (197)
2 3ncv_A DNA mismatch repair pro 100.0 1.7E-46 5.8E-51 387.0 20.4 203 895-1115 14-219 (220)
3 1x9z_A DNA mismatch repair pro 100.0 1.1E-34 3.9E-39 290.3 16.8 164 905-1099 5-168 (188)
4 3na3_A DNA mismatch repair pro 99.6 2E-16 7E-21 173.4 4.9 85 2-103 261-345 (348)
5 3h4l_A DNA mismatch repair pro 99.6 1.2E-15 4E-20 168.2 6.4 78 2-97 285-362 (367)
6 1h7s_A PMS1 protein homolog 2; 99.5 3.7E-15 1.3E-19 163.7 6.5 75 2-94 290-364 (365)
7 1b63_A MUTL; DNA mismatch repa 99.5 3.6E-15 1.2E-19 161.3 5.9 76 2-94 258-333 (333)
8 3rbn_A DNA mismatch repair pro 77.5 12 0.00041 41.0 10.8 47 904-950 56-102 (284)
9 2x4h_A Hypothetical protein SS 43.5 12 0.00041 34.4 2.6 27 1069-1098 111-137 (139)
10 3hrs_A Metalloregulator SCAR; 41.3 11 0.00038 38.3 2.2 29 1068-1099 101-129 (214)
11 1fx7_A Iron-dependent represso 39.3 15 0.00051 37.5 2.7 31 1066-1099 103-133 (230)
12 1lxj_A YBL001C, hypothetical 1 20.6 60 0.0021 30.4 3.1 50 59-109 35-86 (104)
13 1yqh_A DUF77, IG hypothetical 20.4 91 0.0031 29.7 4.3 49 60-109 37-87 (109)
No 1
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=100.00 E-value=2.7e-47 Score=384.78 Aligned_cols=193 Identities=21% Similarity=0.273 Sum_probs=168.2
Q ss_pred ccccCceEEEEEcCeEEEEEeCCeEEEEehhHHHHHHhHHHHHHHHhcCCCccccccCcceeEeeCHHHHHHHHHHHHHH
Q 001133 904 SCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQI 983 (1145)
Q Consensus 904 e~L~d~KVIGQVdnKYILaE~gdgLyIIDQHAAHERILYERLlkkL~sgq~~SQQLLfpPQeLeLP~~E~qLLeE~keeL 983 (1145)
..++.+++|||++++|||++.+++|||||||||||||+||+|++.+......+|++|. |+.+.+++.|..+++++.+.|
T Consensus 4 ~~~~~~~~igQ~~~~yIl~~~~~~L~lIDQHAAhERi~yE~l~~~~~~~~~~sQ~LL~-P~~l~ls~~e~~~l~~~~~~l 82 (197)
T 3kdg_A 4 DRVPIMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGEVEPEVQEMIV-PLTFHYSTNEALIIEQHKQEL 82 (197)
T ss_dssp CCCCCCEEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHCSSCCEEEEEE-EEEEECCTTHHHHHHHTHHHH
T ss_pred ccCCCCeEEEEEcCEEEEEEeCCCEEEEEHHHHHHHHHHHHHHHHHccCCCCccccCC-CEEEecCHHHHHHHHHHHHHH
Confidence 4577899999999999999999999999999999999999999998766555666665 789999999999999999999
Q ss_pred HhcCcEEEeeccCccccccccccccccceeEEEEeecccccCCCChhHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhhh
Q 001133 984 KDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRG 1063 (1145)
Q Consensus 984 EkLGFeIEI~~egsesFGeNsnil~~g~~tIiIRAVP~IL~~~l~edDL~ELLqeLlEtdgsstiP~~IeeLLASkACRS 1063 (1145)
++|||+++ .|| ++++.|++||.++........+.++|..+.+.+. ...+....++++++|||+
T Consensus 83 ~~~Gf~~e-------~~g---------~~~~~v~~vP~~l~~~~~~~~l~ell~~l~~~~~-~~~~~~~~~~~~~~ACr~ 145 (197)
T 3kdg_A 83 ESVGVFLE-------SFG---------SNSYIVRCHPAWFPKGEEAELIEEIIQQVLDSKN-IDIKKLREEAAIMMSCKG 145 (197)
T ss_dssp HHTTCCCE-------ECS---------TTEEEEEEEETTSCTTCHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHCC
T ss_pred HhCCCEEE-------ECC---------CCEEEEEecCcccccccHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhHh
Confidence 99999997 365 3489999999999987777788899998876543 223445667999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcEEEECCChHHHHHHHHhh
Q 001133 1064 AIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQL 1115 (1145)
Q Consensus 1064 AIKfGDkLS~EEMeaLIrqLfaCenPfqCPHGRPTmVpLlSLeELEKkFkRl 1115 (1145)
|||+|+.|+.+||++||++|++|++||+||||||||++| +.+||+|+|+|.
T Consensus 146 AIk~g~~Ls~~Em~~Ll~~L~~~~~p~~CpHGRPt~~~l-~~~elek~F~R~ 196 (197)
T 3kdg_A 146 SIKANRHLRNDEIKALLDDLRSTSDPFTCPHGRPIIIHH-STYEMEKMFKRV 196 (197)
T ss_dssp ----CCCCCHHHHHHHHHHHHHSSCTTBCTTSCBCEEEE-EHHHHHHHHCSC
T ss_pred hccCCCCCCHHHHHHHHHHHHcCCCCCcCCCCCcEEEEe-CHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999 999999999986
No 2
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.7e-46 Score=387.05 Aligned_cols=203 Identities=24% Similarity=0.314 Sum_probs=167.8
Q ss_pred cccccCcCc--ccccCceEEEEEcCeEEEEEeCCeEEEEehhHHHHHHhHHHHHHHHh-cCCCccccccCcceeEeeCHH
Q 001133 895 FFIPDSINK--SCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVL-SGEGKSVAYLDAEQELVLPEI 971 (1145)
Q Consensus 895 slVp~rISK--e~L~d~KVIGQVdnKYILaE~gdgLyIIDQHAAHERILYERLlkkL~-sgq~~SQQLLfpPQeLeLP~~ 971 (1145)
.+||.-+-+ ..++..++|||++++|||++.+++|||||||||||||+||+|++++. .+...+|++|. |+.|.|++.
T Consensus 14 ~~~~~~~~~~~~~~p~g~vigQv~~~YIL~e~~~gL~lIDQHAAhERi~yE~l~~~~~~~~~~~sQ~LL~-P~~l~Ls~~ 92 (220)
T 3ncv_A 14 GLVPRGSHSQSELPPLGFAIAQLLGIYILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQHLLI-PVTFAASHE 92 (220)
T ss_dssp -----------CCCTTCEEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHSSCCEEEEEE-EEEEECCHH
T ss_pred CccccccCCccCCCCCceeeeeEcCEEEEEEeCCCEEEEEHHHHHHHHHHHHHHHHHhccCCccceeeCC-CeEEEcCHH
Confidence 455543333 34678999999999999999999999999999999999999999986 55555666665 689999999
Q ss_pred HHHHHHHHHHHHHhcCcEEEeeccCccccccccccccccceeEEEEeecccccCCCChhHHHHHHHHHHhcCCCCCChHH
Q 001133 972 GYQLLQNFAEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPS 1051 (1145)
Q Consensus 972 E~qLLeE~keeLEkLGFeIEI~~egsesFGeNsnil~~g~~tIiIRAVP~IL~~~l~edDL~ELLqeLlEtdgsstiP~~ 1051 (1145)
|..+++++.+.|++|||+++ .|| ++++.|++||.++........+.++|+.+.+.+.....+..
T Consensus 93 e~~~l~~~~~~L~~lGf~ie-------~fg---------~~~v~V~~vP~~l~~~d~~~ll~~ll~~l~~~~~~~~~~~~ 156 (220)
T 3ncv_A 93 ECAALADHAETLAGFGLELS-------DMG---------GNTLAVRAAPVMLGKSDVVSLARDVLGELAQVGSSQTIASH 156 (220)
T ss_dssp HHHHHHHHHHHHHHTTCEEE-------CCS---------TTEEEEEEEETTSCCSCHHHHHHHHHHHHTTCC-----CTT
T ss_pred HHHHHHHHHHHHHhCCCEEE-------ECC---------CCEEEEEEcCcccCCCCHHHHHHHHHHHHHhcCCCcchHHH
Confidence 99999999999999999998 365 44899999999998776667778888888754433345567
Q ss_pred HHHHHHHHhhhhhcccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcEEEECCChHHHHHHHHhh
Q 001133 1052 VLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQL 1115 (1145)
Q Consensus 1052 IeeLLASkACRSAIKfGDkLS~EEMeaLIrqLfaCenPfqCPHGRPTmVpLlSLeELEKkFkRl 1115 (1145)
+.++++++|||+|||+|+.|+.+||++||++|++|++||+||||||||++| +.+||+|+|+|.
T Consensus 157 ~~~~~as~ACr~AIk~g~~Ls~~Em~~Ll~~L~~~~~P~~CPHGRPt~i~l-s~~eLek~F~R~ 219 (220)
T 3ncv_A 157 ENRILATMSCHGSIRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKL-TLKELDTLFLRG 219 (220)
T ss_dssp HHHHHHHHTTCSSSCSSCCCCHHHHHHHHHHHHTSTTTTBCTTSCBSEEEE-EHHHHHHTC---
T ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhCCCCCcCCCCCcEEEEe-CHHHHHHHhCCC
Confidence 889999999999999999999999999999999999999999999999999 999999999996
No 3
>1x9z_A DNA mismatch repair protein MUTL; alpha-beta fold, dimer, replication, signaling protein; HET: DNA MSE; 2.10A {Escherichia coli} SCOP: d.292.1.1
Probab=100.00 E-value=1.1e-34 Score=290.34 Aligned_cols=164 Identities=13% Similarity=0.062 Sum_probs=140.8
Q ss_pred cccCceEEEEEcCeEEEEEeCCeEEEEehhHHHHHHhHHHHHHHHhcCCCccccccCcceeEeeCHHHHHHHHHHHHHHH
Q 001133 905 CLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIK 984 (1145)
Q Consensus 905 ~L~d~KVIGQVdnKYILaE~gdgLyIIDQHAAHERILYERLlkkL~sgq~~SQQLLfpPQeLeLP~~E~qLLeE~keeLE 984 (1145)
..+.+++|||++++|||++.+++||||||||| |||+||++++. ......+|++| .|..+.+++.+..+++++.+.|+
T Consensus 5 ~~~~~~vlgQ~~~~yIl~~~~~~L~lIDQHAA-ERi~yE~l~~~-~~~~~~~Q~LL-~P~~l~ls~~e~~~l~~~~~~l~ 81 (188)
T 1x9z_A 5 SQSFGRVLTIVHSDCALLERDGNISLLSLPVA-ERWLRQAQLTP-GEAPVCAQPLL-IPLRLKVSAEEKSALEKAQSALA 81 (188)
T ss_dssp -CCCCEEEEEETTTEEEEEETTEEEEEEHHHH-HHHHHHHHHSB-TTBCCCEEEEE-EEEEEECCHHHHHHHHHHHHHHH
T ss_pred cCCCceeeeeecCEEEEEEeCCCEEEEeHHHH-HHHHHHHHHHh-cCCCCCcccCC-CCEEEEeCHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999 99999999987 43344455555 47899999999999999999999
Q ss_pred hcCcEEEeeccCccccccccccccccceeEEEEeecccccCCCChhHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhhhh
Q 001133 985 DWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRGA 1064 (1145)
Q Consensus 985 kLGFeIEI~~egsesFGeNsnil~~g~~tIiIRAVP~IL~~~l~edDL~ELLqeLlEtdgsstiP~~IeeLLASkACRSA 1064 (1145)
++||+++. || ++ +.|++||.+++.......+.++|+.+.+ + ... ...++++++|||+
T Consensus 82 ~~Gf~~e~-------~g---------~~-~~v~~vP~~l~~~~~~~li~~ll~~l~~-~-~~~---~~~~~~~~~AC~~- 138 (188)
T 1x9z_A 82 ELGIDFQS-------DA---------QH-VTIRAVPLPLRQQNLQILIPELIGYLAK-Q-SVF---EPGNIAQWIARNL- 138 (188)
T ss_dssp HTTCEEEE-------CS---------SE-EEEEEEEGGGTTSCHHHHHHHHHHHHTT-C-SSC---CHHHHHHHHHHTT-
T ss_pred hCCcEEEE-------cC---------Cc-EEEEecCchhcccCHHHHHHHHHHHHHh-C-Ccc---hHHHHHHHHHHhh-
Confidence 99999983 54 45 9999999999887666778888888764 2 111 2378999999999
Q ss_pred cccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcEE
Q 001133 1065 IMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTT 1099 (1145)
Q Consensus 1065 IKfGDkLS~EEMeaLIrqLfaCenPfqCPHGRPTm 1099 (1145)
||+|+.|+.+||++||++|.+| |||||||+
T Consensus 139 ik~g~~Ls~~em~~Ll~~L~~~-----CpHGRPt~ 168 (188)
T 1x9z_A 139 MSEHAQWSMAQAITLLADVERL-----CPQLVKTP 168 (188)
T ss_dssp SCCCCSCCHHHHHHHHHHHHHH-----CHHHHHSC
T ss_pred CccCCCCCHHHHHHHHHHHHhH-----CCCCCcCc
Confidence 9999999999999999999999 99999996
No 4
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.61 E-value=2e-16 Score=173.37 Aligned_cols=85 Identities=21% Similarity=0.243 Sum_probs=52.6
Q ss_pred ccccccccccccHHHHHHHHHhhccCCCCccccCCCccCCCCCCCCCceEEEEeecCCCcceeeecCCcceEEecCchhH
Q 001133 2 SDINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPV 81 (1145)
Q Consensus 2 ~fVN~RlV~kt~iHkaln~l~rsli~~~s~~~~~~~~~~krs~~~~~PvyVLnl~CppseyDVnvhPaKTlVeFkDWd~V 81 (1145)
.|||+|+|..+.|+|||+.+|+.++++ +.||+|||||+|||..|||||||+|++|+|.|++.|
T Consensus 261 ~fVNgR~v~~~~l~~ai~~~y~~~l~~-----------------~~~P~~~L~l~~~p~~vDVNvhP~K~eV~f~~e~~i 323 (348)
T 3na3_A 261 LFINHRLVESTSLRKAIETVYAAYLPK-----------------NTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESI 323 (348)
T ss_dssp EEETTEECCCTTHHHHHHHHHHTTSCT-----------------TCBCEEEEEEECC----------------------C
T ss_pred EEECCeEecCHHHHHHHHHHHHHhCcC-----------------CCceEEEEEEEeChhheeeeeCCCcCEEEEcCHHHH
Confidence 699999999999999999999999998 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCccCccc
Q 001133 82 LAFIERAIRSAWMKKIAHDSFD 103 (1145)
Q Consensus 82 l~~ve~aVr~~l~~~~~~~s~~ 103 (1145)
+.+|.+||+++|......-+|.
T Consensus 324 ~~~i~~~v~~~l~~~~~sr~f~ 345 (348)
T 3na3_A 324 LERVQQHIESKLLGSNSSRMYF 345 (348)
T ss_dssp THHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHhcCCCcceee
Confidence 9999999999998766655543
No 5
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.2e-15 Score=168.22 Aligned_cols=78 Identities=23% Similarity=0.338 Sum_probs=73.6
Q ss_pred ccccccccccccHHHHHHHHHhhccCCCCccccCCCccCCCCCCCCCceEEEEeecCCCcceeeecCCcceEEecCchhH
Q 001133 2 SDINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPV 81 (1145)
Q Consensus 2 ~fVN~RlV~kt~iHkaln~l~rsli~~~s~~~~~~~~~~krs~~~~~PvyVLnl~CppseyDVnvhPaKTlVeFkDWd~V 81 (1145)
.|||+|+|..+.|+|||+.+|+++.+ +.||+|||||+|||..|||||||+|++|+|+||+.|
T Consensus 285 ~fVNgR~v~~~~l~~ai~~~y~~~~~------------------~~~P~~~L~l~~~p~~vDVNVhP~K~eV~f~~e~~i 346 (367)
T 3h4l_A 285 IYVNKRPVEYSTLLKCCNEVYKTFNN------------------VQFPAVFLNLELPMSLIDVNVTPDKRVILLHNERAV 346 (367)
T ss_dssp EEETTEEECCHHHHHHHHHHHHTTCS------------------SCBCCEEEEEECCGGGEECCCSSSTTCCEETTHHHH
T ss_pred EEECCCEecCHHHHHHHHHHHHhcCC------------------CCCcEEEEEEEcChHHcceeECCCCCEEEEcCHHHH
Confidence 69999999999999999999998643 489999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q 001133 82 LAFIERAIRSAWMKKI 97 (1145)
Q Consensus 82 l~~ve~aVr~~l~~~~ 97 (1145)
+.+|+++|+++|..+.
T Consensus 347 ~~~i~~~l~~~~~~~~ 362 (367)
T 3h4l_A 347 IDIFKTTLSDYYNRQE 362 (367)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcC
Confidence 9999999999997754
No 6
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.54 E-value=3.7e-15 Score=163.68 Aligned_cols=75 Identities=17% Similarity=0.280 Sum_probs=66.1
Q ss_pred ccccccccccccHHHHHHHHHhhccCCCCccccCCCccCCCCCCCCCceEEEEeecCCCcceeeecCCcceEEecCchhH
Q 001133 2 SDINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPV 81 (1145)
Q Consensus 2 ~fVN~RlV~kt~iHkaln~l~rsli~~~s~~~~~~~~~~krs~~~~~PvyVLnl~CppseyDVnvhPaKTlVeFkDWd~V 81 (1145)
.|||+|+|..+.|+|||+.+|+.+++. .||+|+|||+|||..|||||||+|++|+|.||+.|
T Consensus 290 ~fvNgR~v~~~~l~~ai~~~y~~~~~~------------------~~P~~~L~l~~~p~~vDvNVhP~K~eV~f~~e~~i 351 (365)
T 1h7s_A 290 FFINRRPCDPAKVCRLVNEVYHMYNRH------------------QYPFVVLNISVDSECVDINVTPDKRQILLQEEKLL 351 (365)
T ss_dssp EEETTEEECCHHHHHHHHHHHHTTCTT------------------CBCCEEEEEECCGGGEEEC------CEEETTHHHH
T ss_pred EEECCeEecCHHHHHHHHHHHHhhCcc------------------CCcEEEEEEEeChHHcceEECCCcCEEEEcCHHHH
Confidence 699999999999999999999997765 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 001133 82 LAFIERAIRSAWM 94 (1145)
Q Consensus 82 l~~ve~aVr~~l~ 94 (1145)
+.+|+++|+++|.
T Consensus 352 ~~~i~~~~~~~~~ 364 (365)
T 1h7s_A 352 LAVLKTSLIGMFD 364 (365)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999984
No 7
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.53 E-value=3.6e-15 Score=161.29 Aligned_cols=76 Identities=21% Similarity=0.254 Sum_probs=73.6
Q ss_pred ccccccccccccHHHHHHHHHhhccCCCCccccCCCccCCCCCCCCCceEEEEeecCCCcceeeecCCcceEEecCchhH
Q 001133 2 SDINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPV 81 (1145)
Q Consensus 2 ~fVN~RlV~kt~iHkaln~l~rsli~~~s~~~~~~~~~~krs~~~~~PvyVLnl~CppseyDVnvhPaKTlVeFkDWd~V 81 (1145)
.|||+|+|....|+++|+.+|+.+++. +.||+|+|+|+|||..|||||||+|++|+|.||+.|
T Consensus 258 ~fvNgR~V~~~~l~~ai~~~y~~~l~~-----------------~~~P~~~l~l~~~p~~vDvNvhP~K~ev~f~~~~~v 320 (333)
T 1b63_A 258 CYVNGRMMRDRLINHAIRQACEDKLGA-----------------DQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLV 320 (333)
T ss_dssp EEETTEECCCHHHHHHHHHHHHHHSSS-----------------CCCCCEEEEEECCGGGEECTTSTTCCCCEETTHHHH
T ss_pred EEECCEEecCHHHHHHHHHHHHhhccC-----------------CCCcEEEEEEEeCchhccceECCCcCEEEeCCHHHH
Confidence 699999999999999999999999988 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 001133 82 LAFIERAIRSAWM 94 (1145)
Q Consensus 82 l~~ve~aVr~~l~ 94 (1145)
+.+|.++|+++|.
T Consensus 321 ~~~i~~~i~~~l~ 333 (333)
T 1b63_A 321 HDFIYQGVLSVLQ 333 (333)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999983
No 8
>3rbn_A DNA mismatch repair protein MLH1; structural genomics, structural genomics consortium, SGC, DN mismatch repair, endonucleases, protein binding; HET: DNA; 2.16A {Homo sapiens}
Probab=77.55 E-value=12 Score=41.01 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=41.0
Q ss_pred ccccCceEEEEEcCeEEEEEeCCeEEEEehhHHHHHHhHHHHHHHHh
Q 001133 904 SCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVL 950 (1145)
Q Consensus 904 e~L~d~KVIGQVdnKYILaE~gdgLyIIDQHAAHERILYERLlkkL~ 950 (1145)
+.|.+..+||-|+..+.+++.+..||+||-.+.-+=.-|...+.++.
T Consensus 56 ei~~~~tfVG~VD~~~aLiQ~~tkLYLvd~~~l~~ElFYQ~~L~~Fg 102 (284)
T 3rbn_A 56 EMLHNHSFVGCVNPQWALAQHQTKLYLLNTTKLSEELFYQILIYDFA 102 (284)
T ss_dssp HHHHTCEEEEESSSSEEEEEETTEEEEEEHHHHHHHHHHHHHHHSTT
T ss_pred HHHHhCeEEEEECCCeeEEEeCCeEEEecHHHHHHHHHHHHHHHHhc
Confidence 56788999999999999999999999999998887777777777664
No 9
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=43.54 E-value=12 Score=34.42 Aligned_cols=27 Identities=11% Similarity=-0.004 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCCcE
Q 001133 1069 DSLLPSECALIVEELKQTSLCFQCAHGRPT 1098 (1145)
Q Consensus 1069 DkLS~EEMeaLIrqLfaCenPfqCPHGRPT 1098 (1145)
..++.+..++|.+. ++.|..||||.|+
T Consensus 111 ~~~~~~~~~~L~~~---l~~~~~~p~g~~i 137 (139)
T 2x4h_A 111 YLIPEEIIDKLYNY---LGKPSYCPHGLEI 137 (139)
T ss_dssp GGSCHHHHHHHHHH---TTCCSBCTTSCBC
T ss_pred hcCCHHHHHHHHHH---hCCCCCCCCCCCC
Confidence 34677777777554 3578999999996
No 10
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=41.35 E-value=11 Score=38.35 Aligned_cols=29 Identities=14% Similarity=0.157 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCCCCCcEE
Q 001133 1068 GDSLLPSECALIVEELKQTSLCFQCAHGRPTT 1099 (1145)
Q Consensus 1068 GDkLS~EEMeaLIrqLfaCenPfqCPHGRPTm 1099 (1145)
-+.++.+..++|.+-| .+|-+||||+|+-
T Consensus 101 Eh~~s~~~~~~l~~~l---~~p~~~Phg~~Ip 129 (214)
T 3hrs_A 101 EHTVSDHFVERLDQLL---DYPKACPHGGTIP 129 (214)
T ss_dssp HTTSCHHHHHHHHHHT---TCCSBCTTSCBCC
T ss_pred hccCCHHHHHHHHHHh---CCCCCCcCcCCcC
Confidence 4678888777776655 4688999999864
No 11
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=39.31 E-value=15 Score=37.50 Aligned_cols=31 Identities=13% Similarity=0.107 Sum_probs=24.1
Q ss_pred ccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcEE
Q 001133 1066 MFGDSLLPSECALIVEELKQTSLCFQCAHGRPTT 1099 (1145)
Q Consensus 1066 KfGDkLS~EEMeaLIrqLfaCenPfqCPHGRPTm 1099 (1145)
+.-+.|+.++.+.|.+-|. .|-.||||.|+-
T Consensus 103 ~le~~ls~e~~~~L~~~L~---~~~~~p~g~~ip 133 (230)
T 1fx7_A 103 RWEHVMSEDVERRLVKVLN---NPTTSPFGNPIP 133 (230)
T ss_dssp HHTTTCCHHHHHHHHHHTT---SCCBCTTSCBCT
T ss_pred HHHhcCCHHHHHHHHHHhC---CCCCCCCCCCCC
Confidence 3456799999999887765 467899999863
No 12
>1lxj_A YBL001C, hypothetical 11.5KDA protein in HTB2-NTH2 interge region; hypothetical protein, HTB2-NTH2 intergenic region; 1.80A {Saccharomyces cerevisiae} SCOP: d.58.48.1
Probab=20.60 E-value=60 Score=30.44 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=37.7
Q ss_pred CCcceeeecCCcceEEecCchhHHHHHHHHHHHHHhh--cCccCccccccccc
Q 001133 59 HSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMK--KIAHDSFDVDMLED 109 (1145)
Q Consensus 59 pseyDVnvhPaKTlVeFkDWd~Vl~~ve~aVr~~l~~--~~~~~s~~~~~~~~ 109 (1145)
.+.++..++|--|.|| -+||.|+.+|.++.+..... .+....+..|.+.|
T Consensus 35 ~sGl~y~~~pm~T~IE-Ge~devm~vv~~~~e~~~~~G~~RV~~~iKid~R~d 86 (104)
T 1lxj_A 35 ESPLKSTLHSAGTTIE-GPWDDVMGLIGEIHEYGHEKGYVRVHTDIRVGTRTD 86 (104)
T ss_dssp TSSSEEEEETTEEEEE-EEHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSS
T ss_pred HcCCCeEeCCCccEEE-cCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEecCC
Confidence 3567788999999999 68999999999999998853 34444444444443
No 13
>1yqh_A DUF77, IG hypothetical 16092; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus cereus atcc 14579} SCOP: d.58.48.1
Probab=20.40 E-value=91 Score=29.66 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=37.4
Q ss_pred CcceeeecCCcceEEecCchhHHHHHHHHHHHHHhh--cCccCccccccccc
Q 001133 60 SLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMK--KIAHDSFDVDMLED 109 (1145)
Q Consensus 60 seyDVnvhPaKTlVeFkDWd~Vl~~ve~aVr~~l~~--~~~~~s~~~~~~~~ 109 (1145)
+.++..++|--|.|| -+||.|+.+|.++.+..... .+....+..|.+.|
T Consensus 37 sGl~y~~~pmgT~IE-Ge~devm~vv~~~~e~~~~~G~~RV~t~iKId~R~d 87 (109)
T 1yqh_A 37 SGVRYEVGAMETTLE-GELDVLLDVVKRAQQACVDAGAEEVITSIKIHYRPS 87 (109)
T ss_dssp SCSEEEECSSCEEEE-ECHHHHHHHHHHHHHHHHHTTCSEEEEEEEEECCTT
T ss_pred cCCCeEecCCccEEE-cCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEecCC
Confidence 456778999999999 68999999999999987753 34444455555544
Done!