Query 001134
Match_columns 1145
No_of_seqs 608 out of 2588
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 16:45:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001134.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001134hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1865 Ubiquitin carboxyl-ter 100.0 1.1E-69 2.3E-74 624.1 27.6 322 563-891 88-410 (545)
2 cd02661 Peptidase_C19E A subfa 100.0 3.7E-54 8E-59 479.1 28.8 302 585-889 1-304 (304)
3 cd02660 Peptidase_C19D A subfa 100.0 3.8E-54 8.1E-59 486.8 29.2 298 586-889 1-328 (328)
4 cd02663 Peptidase_C19G A subfa 100.0 2.9E-54 6.3E-59 484.1 27.2 278 587-889 1-300 (300)
5 cd02668 Peptidase_C19L A subfa 100.0 1.8E-53 3.8E-58 482.6 28.3 288 587-889 1-324 (324)
6 cd02664 Peptidase_C19H A subfa 100.0 2.6E-53 5.7E-58 482.2 24.1 274 587-889 1-327 (327)
7 cd02669 Peptidase_C19M A subfa 100.0 7.2E-53 1.6E-57 496.4 27.6 345 528-889 63-440 (440)
8 cd02671 Peptidase_C19O A subfa 100.0 2.3E-52 5E-57 475.6 27.3 274 581-889 20-332 (332)
9 cd02667 Peptidase_C19K A subfa 100.0 1.2E-52 2.7E-57 466.5 24.1 246 587-889 1-279 (279)
10 cd02657 Peptidase_C19A A subfa 100.0 4.1E-52 8.9E-57 466.0 26.6 283 587-889 1-305 (305)
11 KOG0944 Ubiquitin-specific pro 100.0 8.8E-53 1.9E-57 487.2 19.2 355 513-891 225-762 (763)
12 cd02658 Peptidase_C19B A subfa 100.0 9E-52 2E-56 464.8 26.7 275 587-889 1-311 (311)
13 cd02659 peptidase_C19C A subfa 100.0 7.2E-51 1.6E-55 461.2 27.0 294 584-893 1-334 (334)
14 COG5560 UBP12 Ubiquitin C-term 100.0 2.2E-47 4.7E-52 438.5 15.2 307 583-892 263-823 (823)
15 cd02662 Peptidase_C19F A subfa 100.0 4.2E-46 9.2E-51 406.0 21.5 210 587-889 1-240 (240)
16 COG5533 UBP5 Ubiquitin C-termi 100.0 3.2E-45 6.9E-50 393.5 20.2 306 582-891 68-414 (415)
17 cd02674 Peptidase_C19R A subfa 100.0 1.8E-43 3.8E-48 379.5 20.2 220 587-889 1-230 (230)
18 KOG1866 Ubiquitin carboxyl-ter 100.0 1.2E-43 2.6E-48 412.7 5.1 305 580-899 90-442 (944)
19 COG5207 UBP14 Isopeptidase T [ 100.0 6.9E-42 1.5E-46 384.7 18.3 371 495-891 205-749 (749)
20 PF00443 UCH: Ubiquitin carbox 100.0 5.8E-41 1.3E-45 361.1 22.4 248 585-888 1-269 (269)
21 KOG1868 Ubiquitin C-terminal h 100.0 4.4E-42 9.6E-47 411.9 14.7 311 580-893 296-648 (653)
22 cd02673 Peptidase_C19Q A subfa 100.0 9.2E-41 2E-45 365.5 19.7 238 588-889 2-245 (245)
23 cd02666 Peptidase_C19J A subfa 100.0 1.8E-40 3.9E-45 378.9 19.5 270 585-889 1-343 (343)
24 COG5077 Ubiquitin carboxyl-ter 100.0 2.2E-41 4.8E-46 393.5 7.8 310 563-893 173-513 (1089)
25 cd02257 Peptidase_C19 Peptidas 100.0 8.7E-39 1.9E-43 338.3 21.6 235 587-889 1-255 (255)
26 cd02665 Peptidase_C19I A subfa 100.0 2.8E-39 6.1E-44 349.4 16.8 217 587-889 1-228 (228)
27 KOG1867 Ubiquitin-specific pro 100.0 3.3E-39 7.2E-44 381.0 17.0 307 581-892 157-485 (492)
28 KOG1873 Ubiquitin-specific pro 100.0 2.1E-37 4.5E-42 362.3 9.0 305 583-891 203-877 (877)
29 cd02672 Peptidase_C19P A subfa 100.0 2.8E-36 6E-41 334.3 13.5 235 582-889 12-268 (268)
30 KOG4598 Putative ubiquitin-spe 100.0 6.9E-37 1.5E-41 352.1 1.5 274 583-897 85-447 (1203)
31 KOG1870 Ubiquitin C-terminal h 100.0 3.4E-34 7.4E-39 359.0 12.4 308 580-892 241-842 (842)
32 KOG1863 Ubiquitin carboxyl-ter 100.0 4.7E-34 1E-38 365.6 12.9 303 575-894 160-488 (1093)
33 PF13423 UCH_1: Ubiquitin carb 100.0 4.4E-32 9.6E-37 304.2 23.2 276 586-870 1-295 (295)
34 cd02670 Peptidase_C19N A subfa 100.0 1.9E-30 4E-35 283.0 15.4 195 587-889 1-241 (241)
35 KOG1864 Ubiquitin-specific pro 100.0 2.2E-30 4.8E-35 310.7 14.9 307 584-892 231-573 (587)
36 KOG1872 Ubiquitin-specific pro 100.0 8.8E-29 1.9E-33 281.5 8.7 296 582-891 102-469 (473)
37 KOG2026 Spindle pole body prot 99.9 2.2E-27 4.7E-32 262.9 16.1 357 507-891 53-441 (442)
38 KOG1871 Ubiquitin-specific pro 99.9 2.2E-26 4.8E-31 256.2 13.7 303 582-891 25-419 (420)
39 KOG1275 PAB-dependent poly(A) 99.7 1.1E-17 2.3E-22 200.6 13.7 297 582-888 496-860 (1118)
40 PF01753 zf-MYND: MYND finger; 98.8 3.9E-09 8.5E-14 83.2 2.5 37 75-112 1-37 (37)
41 KOG1710 MYND Zn-finger and ank 98.4 5.5E-08 1.2E-12 106.3 0.8 46 69-115 316-362 (396)
42 PF15499 Peptidase_C98: Ubiqui 98.2 3.8E-06 8.3E-11 91.5 8.4 131 701-870 118-253 (275)
43 KOG2061 Uncharacterized MYND Z 97.5 4.3E-05 9.4E-10 87.3 2.1 74 71-163 135-208 (362)
44 KOG1864 Ubiquitin-specific pro 96.9 0.00084 1.8E-08 82.7 5.1 98 588-685 34-150 (587)
45 KOG3612 PHD Zn-finger protein 96.1 0.0043 9.3E-08 73.9 4.0 44 72-118 527-570 (588)
46 KOG1887 Ubiquitin carboxyl-ter 95.0 0.0042 9.2E-08 77.2 -1.7 208 668-890 548-789 (806)
47 KOG3556 Familial cylindromatos 94.7 0.024 5.2E-07 67.2 3.6 27 584-610 367-393 (724)
48 PF08715 Viral_protease: Papai 94.3 0.7 1.5E-05 53.5 14.1 75 586-684 103-178 (320)
49 PLN03158 methionine aminopepti 91.7 0.11 2.4E-06 61.8 2.9 41 70-111 7-54 (396)
50 PF13824 zf-Mss51: Zinc-finger 82.6 0.91 2E-05 39.4 2.2 42 74-116 1-46 (55)
51 PF04438 zf-HIT: HIT zinc fing 80.8 0.91 2E-05 34.7 1.4 28 73-101 3-30 (30)
52 PF05408 Peptidase_C28: Foot-a 80.4 0.73 1.6E-05 48.9 1.0 48 833-892 129-176 (193)
53 KOG3362 Predicted BBOX Zn-fing 72.2 2.3 4.9E-05 43.6 1.9 35 69-104 115-149 (156)
54 PF10013 DUF2256: Uncharacteri 55.6 4.4 9.6E-05 33.4 0.3 30 72-101 8-40 (42)
55 PRK01343 zinc-binding protein; 51.7 12 0.00027 32.9 2.4 27 72-103 9-35 (57)
56 PF05408 Peptidase_C28: Foot-a 51.0 26 0.00056 37.7 5.1 23 584-606 32-54 (193)
57 PF09889 DUF2116: Uncharacteri 43.4 19 0.0004 32.0 2.3 29 72-106 3-31 (59)
58 KOG2857 Predicted MYND Zn-fing 42.3 14 0.0003 38.0 1.5 38 73-116 6-46 (157)
59 PLN03144 Carbon catabolite rep 41.8 15 0.00032 46.4 2.1 39 72-111 59-108 (606)
60 KOG4317 Predicted Zn-finger pr 39.4 12 0.00026 43.0 0.6 36 74-115 9-45 (383)
61 PF10367 Vps39_2: Vacuolar sor 35.9 1.4E+02 0.003 28.3 7.3 50 34-83 40-89 (109)
62 PF12855 Ecl1: Life-span regul 32.5 23 0.00051 29.5 1.1 31 73-106 7-37 (43)
63 COG4338 Uncharacterized protei 31.7 6.1 0.00013 33.4 -2.3 30 72-101 12-44 (54)
64 PF06524 NOA36: NOA36 protein; 30.1 1E+02 0.0022 34.9 5.9 38 68-106 167-204 (314)
65 PF09297 zf-NADH-PPase: NADH p 26.1 33 0.00072 26.3 1.0 23 72-94 3-32 (32)
66 COG3478 Predicted nucleic-acid 25.9 52 0.0011 29.7 2.2 35 764-798 3-39 (68)
67 KOG2738 Putative methionine am 24.8 75 0.0016 36.8 3.7 43 72-115 6-55 (369)
68 KOG4215 Hepatocyte nuclear fac 24.7 32 0.0007 40.5 0.9 37 72-115 19-61 (432)
69 PRK12495 hypothetical protein; 23.7 1E+02 0.0022 34.3 4.4 12 72-83 42-53 (226)
70 PF14353 CpXC: CpXC protein 23.1 1.1E+02 0.0023 30.7 4.2 48 718-776 2-49 (128)
71 PF02099 Josephin: Josephin; 22.8 95 0.0021 32.8 3.9 34 832-873 98-131 (157)
72 KOG1871 Ubiquitin-specific pro 21.5 41 0.00088 40.1 0.9 39 576-614 169-207 (420)
73 COG3357 Predicted transcriptio 21.1 46 0.00099 32.0 1.0 26 68-93 54-86 (97)
No 1
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-69 Score=624.14 Aligned_cols=322 Identities=48% Similarity=0.881 Sum_probs=305.8
Q ss_pred CCcCcchhhhhhhcccCCcccCccccccCCCccchHHHHHHHhCChhHHHHHhhcccccccccccchHHHHHHHHHHHHh
Q 001134 563 DKGLFSYELFVKLYNWNKVELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAK 642 (1145)
Q Consensus 563 eksLf~~E~~lkl~~~~k~el~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~~~~~cll~qL~kLf~~l~ 642 (1145)
.+.||++|.+. +.|.+....+.||.|+|||||+|||||||.++|||.+||+...|...|....+|++|+|+.++....
T Consensus 88 ~k~Lfp~e~~~--~~~~~~~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~ 165 (545)
T KOG1865|consen 88 AKVLFPYEKLP--LSSDRPAAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRAL 165 (545)
T ss_pred chhccccceec--ccccccccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHh
Confidence 48899998887 6788888999999999999999999999999999999999999999999999999999999998777
Q ss_pred cCCC-CCCHHHHHHHHHhhccccCCCccccHHHHHHHHHHhhhhhhhhhhcCCCCCCCCccccccccccceEEeEEEEEc
Q 001134 643 DGKS-PLSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCT 721 (1145)
Q Consensus 643 s~k~-~isP~~fl~~L~~i~~~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~~~~e~siI~~lF~G~l~s~ikC~ 721 (1145)
.... ++.|..|+..|+.|...|+.|+|+||||||+++||.|+..|+ .+.....+..+++++|+++|||.++++++|.
T Consensus 166 ~~~g~pisP~~i~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL--~g~~~~~~~sq~ttlv~~iFGG~LrS~vkC~ 243 (545)
T KOG1865|consen 166 HNPGHPISPSQILSNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACL--PGHKQVDPRSQDTTLVHQIFGGYLRSQIKCL 243 (545)
T ss_pred cCCCCccChHHHHHhhhhhcccccCCchhhHHHHHHHHHHHHHHhhc--CCCccCCcccccceehhhhhccchhhceecc
Confidence 6654 999999999999999999999999999999999999999998 3344456667889999999999999999999
Q ss_pred CCCCeeeeeeeeeeeeeeeecccccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeeccccc
Q 001134 722 KCHGKSERQERMMDLTVEIEGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSGK 801 (1145)
Q Consensus 722 ~C~~~S~~~E~f~~LsL~Ip~~~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~~ 801 (1145)
.|.+++.++|++++|+|+|. ++.+|+++|++|++.|.|+|+|+|.|++|+++++|.|+++|.++|+||+||||||+.+.
T Consensus 244 ~C~~vS~tyE~~~dltvei~-d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~~~ 322 (545)
T KOG1865|consen 244 HCKGVSDTYEPYLDLTLEIQ-DASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSNGT 322 (545)
T ss_pred cCCCcccccccccceEEEec-cchhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehhccCc
Confidence 99999999999999999999 78999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceEecCcccCCCCccCCCCCCCCceEEEEEEEEeecCCCCCCceEEEEEEcCCCcEEEEcCCcceeecccccCCC
Q 001134 802 FGKLNKSIQFPEILDLAPYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQNKWFKVDDSTVTAVERERVLTE 881 (1145)
Q Consensus 802 ~~KI~~~V~FPe~LDLs~y~~~~s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~~gkWy~fNDs~Vt~Vs~eeVls~ 881 (1145)
.+||++.|.||+.|||.|||..+...+..|.|+|||||.|. ..++|||+||||...|+||.|||+.|+.++.+.|+++
T Consensus 323 ~gKI~K~I~fPE~LDl~PyMS~~~e~s~~Y~LYavlVH~g~--~~~~GHY~cYvks~~g~Wy~~DDS~V~~~~~~~VLsq 400 (545)
T KOG1865|consen 323 GGKISKPVSFPETLDLQPYMSQPNEGSTVYKLYAVLVHLGT--SCHSGHYFCYVKSQNGQWYKMDDSEVTQSSIESVLSQ 400 (545)
T ss_pred ccccccccCCcccccccccccCCCCCCceEEEEEEEEeccc--cccCCceEEEEEcCCCceEEccCceeeeccccceecc
Confidence 99999999999999999999988888899999999999997 6999999999999999999999999999999999999
Q ss_pred CcEEEEEEEe
Q 001134 882 GAYMLLYARC 891 (1145)
Q Consensus 882 ~AYILFYeR~ 891 (1145)
+||||||.|.
T Consensus 401 ~AYmLfY~R~ 410 (545)
T KOG1865|consen 401 QAYILFYARK 410 (545)
T ss_pred cceEEEEEee
Confidence 9999999997
No 2
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.7e-54 Score=479.13 Aligned_cols=302 Identities=48% Similarity=0.850 Sum_probs=268.7
Q ss_pred ccccccCCCccchHHHHHHHhCChhHHHHHhhcccccccccccchHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHhhccc
Q 001134 585 PCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAK-DGKSPLSPIGILSRLQSIGSQ 663 (1145)
Q Consensus 585 p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~~~~~cll~qL~kLf~~l~-s~k~~isP~~fl~~L~~i~~~ 663 (1145)
|+||.|+|||||||||||+|+++|+|+++++...+.........|++|+|+.++..+. ..+..+.|..|..++..+.+.
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~ 80 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALASSGPGSAPRIFSSNLKQISKH 80 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHHHHHHh
Confidence 6899999999999999999999999999998765554444566789999999987766 456788999999999999999
Q ss_pred cCCCccccHHHHHHHHHHhhhhhhhhhhcCCC-CCCCCccccccccccceEEeEEEEEcCCCCeeeeeeeeeeeeeeeec
Q 001134 664 LGNGREEDAHEFLRYAIDTMQSVCIEEAGVNA-SGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEG 742 (1145)
Q Consensus 664 F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~-~~~~~~e~siI~~lF~G~l~s~ikC~~C~~~S~~~E~f~~LsL~Ip~ 742 (1145)
|..+.||||+|||.+||+.|++++........ ........++|.++|+|++.++++|..|+..+.+.++|+.|+|++++
T Consensus 81 f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~~~~l~l~i~~ 160 (304)
T cd02661 81 FRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKG 160 (304)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHhhhcccccccCccccCCChhhhcCCcEEeeeEEeCCCCCCcCccccceeeeeecCC
Confidence 99999999999999999999987654332111 01223456789999999999999999999999999999999999986
Q ss_pred ccccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeeccccccccccceEecCcccCCCCccC
Q 001134 743 DIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSGKFGKLNKSIQFPEILDLAPYMS 822 (1145)
Q Consensus 743 ~~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~~~~KI~~~V~FPe~LDLs~y~~ 822 (1145)
. .+|+++|+.++.+|.++++++|.|++|++...+.++..|.++|++|+|||+||.++...|+.+.|.||+.|||.+|+.
T Consensus 161 ~-~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~~~~Ki~~~v~f~~~L~l~~~~~ 239 (304)
T cd02661 161 A-DSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFRGGKINKQISFPETLDLSPYMS 239 (304)
T ss_pred C-CcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccCCccccCCeEecCCeechhhccc
Confidence 5 799999999999999999999999999999999999999999999999999999876689999999999999999988
Q ss_pred CCCCCCCceEEEEEEEEeecCCCCCCceEEEEEEcCCCcEEEEcCCcceeecccccCCCCcEEEEEE
Q 001134 823 GTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQNKWFKVDDSTVTAVERERVLTEGAYMLLYA 889 (1145)
Q Consensus 823 ~~s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~~gkWy~fNDs~Vt~Vs~eeVls~~AYILFYe 889 (1145)
........|+|+|||+|.|. ...+|||+||+|..+++||+|||+.|+++++++|++..||||||.
T Consensus 240 ~~~~~~~~Y~L~~vi~H~G~--~~~~GHY~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYil~Y~ 304 (304)
T cd02661 240 QPNDGPLKYKLYAVLVHSGF--SPHSGHYYCYVKSSNGKWYNMDDSKVSPVSIETVLSQKAYILFYI 304 (304)
T ss_pred cCCCCCceeeEEEEEEECCC--CCCCcCCEEEEECCCCCEEEEeCCeeEECCHHHhcCCCcEEEEeC
Confidence 76666689999999999995 458999999999878999999999999999999999999999993
No 3
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.8e-54 Score=486.77 Aligned_cols=298 Identities=33% Similarity=0.610 Sum_probs=260.0
Q ss_pred cccccCCCccchHHHHHHHhCChhHHHHHhhccccc--ccccccchHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHhhc
Q 001134 586 CGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSK--ECAKKDWCFTCELENLILRAKDG--KSPLSPIGILSRLQSIG 661 (1145)
Q Consensus 586 ~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~--~~~~~~~cll~qL~kLf~~l~s~--k~~isP~~fl~~L~~i~ 661 (1145)
+||.|+|||||||||||+|+++|+|+++|+...+.. .......|+.|+|++||..++.. ...+.|..|+.++....
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~ 80 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWKHS 80 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhc
Confidence 599999999999999999999999999998865543 12345678999999999998533 46789999999998888
Q ss_pred cccCCCccccHHHHHHHHHHhhhhhhhhhhcCCCCCCCCccccccccccceEEeEEEEEcCCCCeeeeeeeeeeeeeeee
Q 001134 662 SQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIE 741 (1145)
Q Consensus 662 ~~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~~~~e~siI~~lF~G~l~s~ikC~~C~~~S~~~E~f~~LsL~Ip 741 (1145)
+.|..+.||||+|||.+||+.|++++...... ........++|.++|+|++.++++|..|++.+...++|+.|+|+++
T Consensus 81 ~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~--~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~ 158 (328)
T cd02660 81 RNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNE--ANDESHCNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDIP 158 (328)
T ss_pred hhhcccccccHHHHHHHHHHHHHHHhhccccc--ccccccCCceeEEecccEEEeeeEcCCCCCccceecccceeeeecc
Confidence 89999999999999999999999876543221 1111233578999999999999999999999999999999999998
Q ss_pred cc--------------cccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeeccccc---ccc
Q 001134 742 GD--------------IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSGK---FGK 804 (1145)
Q Consensus 742 ~~--------------~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~~---~~K 804 (1145)
.. ..+|++||+.|+.+|.+++.+ |.|++|+.++.+.++..|.++|+||+|||+||.++. ..|
T Consensus 159 ~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~K 237 (328)
T cd02660 159 NKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLNKTSRK 237 (328)
T ss_pred ccccccccccccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCccceEEEEEecCCCceeEEEEEeEEecCCCCCcC
Confidence 64 279999999999999999877 999999999999999999999999999999998654 479
Q ss_pred ccceEecCcccCCCCccCC---------CCCCCCceEEEEEEEEeecCCCCCCceEEEEEEcCCCcEEEEcCCcceeecc
Q 001134 805 LNKSIQFPEILDLAPYMSG---------TSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQNKWFKVDDSTVTAVER 875 (1145)
Q Consensus 805 I~~~V~FPe~LDLs~y~~~---------~s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~~gkWy~fNDs~Vt~Vs~ 875 (1145)
+...|.||..|||.+|+.. .......|+|+|||+|+| +..+|||+||+|..+++||+|||+.|+++++
T Consensus 238 ~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G---~~~~GHY~~~~~~~~~~W~~~nD~~V~~~~~ 314 (328)
T cd02660 238 IDTYVQFPLELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKG---TLDTGHYTAYCRQGDGQWFKFDDAMITRVSE 314 (328)
T ss_pred CCcEEeCCCEechhhhcccccccccccccCCCCceEEEEEEEEeec---cCCCCcEEEEEECCCCcEEEEECCeeEECCH
Confidence 9999999999999999874 233457899999999999 4578999999999669999999999999999
Q ss_pred cccCCCCcEEEEEE
Q 001134 876 ERVLTEGAYMLLYA 889 (1145)
Q Consensus 876 eeVls~~AYILFYe 889 (1145)
++|+..+||||||.
T Consensus 315 ~~v~~~~ayil~Y~ 328 (328)
T cd02660 315 EEVLKSQAYLLFYH 328 (328)
T ss_pred HHhcCCCcEEEEeC
Confidence 99999999999994
No 4
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.9e-54 Score=484.06 Aligned_cols=278 Identities=33% Similarity=0.565 Sum_probs=245.8
Q ss_pred ccccCCCccchHHHHHHHhCChhHHHHHhhcccccccccccchHHHHHHHHHHHHhcCC---CCCCHHHHHHHHHhhccc
Q 001134 587 GLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGK---SPLSPIGILSRLQSIGSQ 663 (1145)
Q Consensus 587 GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~~~~~cll~qL~kLf~~l~s~k---~~isP~~fl~~L~~i~~~ 663 (1145)
||.|+|||||||||||+|++ .+++++|+.||..|+... ..++|..|+.++....+.
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~---------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~~~ 59 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF---------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRENEL 59 (300)
T ss_pred CccCCCcceehhHHHHHhhh---------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhcCC
Confidence 89999999999999999987 357889999999998653 468999999999998999
Q ss_pred cCCCccccHHHHHHHHHHhhhhhhhhhhcCCC-------CCCCCccccccccccceEEeEEEEEcCCCCeeeeeeeeeee
Q 001134 664 LGNGREEDAHEFLRYAIDTMQSVCIEEAGVNA-------SGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDL 736 (1145)
Q Consensus 664 F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~-------~~~~~~e~siI~~lF~G~l~s~ikC~~C~~~S~~~E~f~~L 736 (1145)
|..++||||+|||.+|||.|++++........ ........++|.++|+|++.++++|..|+..+.+.|+|++|
T Consensus 60 f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~L 139 (300)
T cd02663 60 FDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDL 139 (300)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcCCCChhhhCceEEEeeEEeCCCCCCccccceeEEe
Confidence 99999999999999999999988764322110 01123456789999999999999999999999999999999
Q ss_pred eeeeecccccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeecccc----ccccccceEecC
Q 001134 737 TVEIEGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSG----KFGKLNKSIQFP 812 (1145)
Q Consensus 737 sL~Ip~~~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~----~~~KI~~~V~FP 812 (1145)
+|+|++ ..+|++||+.|+.+|.++++++|.|++|+.++.+.|+..|.++|+||+|||+||.++ +..|+...|.||
T Consensus 140 sl~i~~-~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp 218 (300)
T cd02663 140 SIDVEQ-NTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFP 218 (300)
T ss_pred ccCCCC-cCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecC
Confidence 999997 479999999999999999999999999999999999999999999999999999864 357999999999
Q ss_pred cccCCCCccCCCCCCCCceEEEEEEEEeecCCCCCCceEEEEEEcCCCcEEEEcCCcceeecccccC--------CCCcE
Q 001134 813 EILDLAPYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQNKWFKVDDSTVTAVERERVL--------TEGAY 884 (1145)
Q Consensus 813 e~LDLs~y~~~~s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~~gkWy~fNDs~Vt~Vs~eeVl--------s~~AY 884 (1145)
..|+|..+..........|+|+|||+|.|. ++++|||+||+|. +++||+|||+.|++++.++|. ..+||
T Consensus 219 ~~L~~~~~~~~~~~~~~~Y~L~~vi~H~G~--~~~~GHY~a~~k~-~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~~aY 295 (300)
T cd02663 219 LELRLFNTTDDAENPDRLYELVAVVVHIGG--GPNHGHYVSIVKS-HGGWLLFDDETVEKIDENAVEEFFGDSPNQATAY 295 (300)
T ss_pred cEEeccccccccCCCCeEEEEEEEEEEecC--CCCCCceEEEEEC-CCcEEEEcCCceEEcCHHHHHHhcCCCCCCCceE
Confidence 999998876544444579999999999994 5789999999999 899999999999999998886 57899
Q ss_pred EEEEE
Q 001134 885 MLLYA 889 (1145)
Q Consensus 885 ILFYe 889 (1145)
||||+
T Consensus 296 iLfY~ 300 (300)
T cd02663 296 VLFYQ 300 (300)
T ss_pred EEEeC
Confidence 99996
No 5
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.8e-53 Score=482.55 Aligned_cols=288 Identities=27% Similarity=0.533 Sum_probs=249.9
Q ss_pred ccccCCCccchHHHHHHHhCChhHHHHHhhccccccc---------ccccchHHHHHHHHHHHHhcC-CCCCCHHHHHHH
Q 001134 587 GLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKEC---------AKKDWCFTCELENLILRAKDG-KSPLSPIGILSR 656 (1145)
Q Consensus 587 GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~---------~~~~~cll~qL~kLf~~l~s~-k~~isP~~fl~~ 656 (1145)
||.|+||||||||+||+|+++|+|+++++........ .....+++++|+.||.+|+.+ ...++|..|+..
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 8999999999999999999999999999865432210 012357999999999999865 467899999988
Q ss_pred HHhhccccCCCccccHHHHHHHHHHhhhhhhhhhhcCCCCCCCCccccccccccceEEeEEEEEcCCCCeeeeeeeeeee
Q 001134 657 LQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDL 736 (1145)
Q Consensus 657 L~~i~~~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~~~~e~siI~~lF~G~l~s~ikC~~C~~~S~~~E~f~~L 736 (1145)
+. |..++||||+|||.+||+.|++++.... .....++|.++|+|++..+++|..|+..+.+.++|+.|
T Consensus 81 l~-----~~~~~QqDa~EFl~~lLd~L~~~l~~~~-------~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~l 148 (324)
T cd02668 81 LG-----LDTGQQQDAQEFSKLFLSLLEAKLSKSK-------NPDLKNIVQDLFRGEYSYVTQCSKCGRESSLPSKFYEL 148 (324)
T ss_pred hC-----CCCccccCHHHHHHHHHHHHHHHHhhcc-------CCcccchhhhhcceEEEEEEEeCCCCCccccccccEEE
Confidence 73 6778999999999999999998764321 11235689999999999999999999999999999999
Q ss_pred eeeeecccccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeecccc----ccccccceEecC
Q 001134 737 TVEIEGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSG----KFGKLNKSIQFP 812 (1145)
Q Consensus 737 sL~Ip~~~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~----~~~KI~~~V~FP 812 (1145)
+|+|++ ..+|+++|+.|+.+|.++|+++|.|++|+.++.+.|+..|.++|+||+|||+||.++ ...|+++.|.||
T Consensus 149 ~l~i~~-~~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp 227 (324)
T cd02668 149 ELQLKG-HKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFP 227 (324)
T ss_pred EEEecc-cCCHHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECC
Confidence 999986 479999999999999999999999999999999999999999999999999999864 347999999999
Q ss_pred cccCCCCccCCCCCCCCceEEEEEEEEeecCCCCCCceEEEEEEcC-CCcEEEEcCCcceeeccccc-------------
Q 001134 813 EILDLAPYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKST-QNKWFKVDDSTVTAVERERV------------- 878 (1145)
Q Consensus 813 e~LDLs~y~~~~s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~-~gkWy~fNDs~Vt~Vs~eeV------------- 878 (1145)
+.|||.+|+.........|+|+|||+|.|. ++++|||+||+|.. +++||+|||+.|++++.+.|
T Consensus 228 ~~Ldl~~~~~~~~~~~~~Y~L~~vI~H~G~--~~~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~~ 305 (324)
T cd02668 228 EILDMGEYLAESDEGSYVYELSGVLIHQGV--SAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPRK 305 (324)
T ss_pred CeEechhhcccccCCCcEEEEEEEEEEcCC--CCCCEeeEEEEECCCCCcEEEEECCceEEcCHHHhhcccccccccccc
Confidence 999999998766566689999999999995 57899999999986 48999999999999977655
Q ss_pred --------CCCCcEEEEEE
Q 001134 879 --------LTEGAYMLLYA 889 (1145)
Q Consensus 879 --------ls~~AYILFYe 889 (1145)
-+..||||||+
T Consensus 306 ~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 306 SEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred cccCCCccccCceEEEEeC
Confidence 24579999996
No 6
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.6e-53 Score=482.21 Aligned_cols=274 Identities=31% Similarity=0.557 Sum_probs=238.4
Q ss_pred ccccCCCccchHHHHHHHhCChhHHHHHhhcccccccccccchHHHHHHHHHHHHhcC-CCCCCHHH-HHHHHHhhcccc
Q 001134 587 GLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDG-KSPLSPIG-ILSRLQSIGSQL 664 (1145)
Q Consensus 587 GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~~~~~cll~qL~kLf~~l~s~-k~~isP~~-fl~~L~~i~~~F 664 (1145)
||.|+||||||||+||+|+++|+||++++...... .....+++++|+.||..|... ...+.|.. ++..+. .+.|
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~--~~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~--~~~f 76 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPR--LGDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASR--PPWF 76 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCccc--cCCcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhc--cccc
Confidence 89999999999999999999999999998765431 123456788999999877654 45666665 665543 5678
Q ss_pred CCCccccHHHHHHHHHHhhhhhhhhhhcCCCCCCCCccccccccccceEEeEEEEEcCCCCeeeeeeeeeeeeeeeeccc
Q 001134 665 GNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEGDI 744 (1145)
Q Consensus 665 ~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~~~~e~siI~~lF~G~l~s~ikC~~C~~~S~~~E~f~~LsL~Ip~~~ 744 (1145)
..+.||||+|||.+||+.|+ ++|.++|+|++.++++|..|+.++.+.|+|..|+|+|+
T Consensus 77 ~~~~QqDa~EFl~~lLd~l~-------------------~~i~~~F~G~~~~~i~C~~C~~~s~~~e~f~~l~L~i~--- 134 (327)
T cd02664 77 TPGSQQDCSEYLRYLLDRLH-------------------TLIEKMFGGKLSTTIRCLNCNSTSARTERFRDLDLSFP--- 134 (327)
T ss_pred CCCCcCCHHHHHHHHHHHHH-------------------HHHHhhCcEEeEeEEEcCCCCCEecccccceeeecCCC---
Confidence 99999999999999999997 25889999999999999999999999999999999997
Q ss_pred ccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeeccccc----cccccceEecCcccCCCCc
Q 001134 745 GNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSGK----FGKLNKSIQFPEILDLAPY 820 (1145)
Q Consensus 745 ~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~~----~~KI~~~V~FPe~LDLs~y 820 (1145)
+|+++|+.|+.+|.++|+++|.|++|++++.+.|+..|.++|+||+|||+||.++. ..||++.|.||+.|||..+
T Consensus 135 -sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl~~~ 213 (327)
T cd02664 135 -SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPVR 213 (327)
T ss_pred -CHHHHHHHhcCeeEccCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecCCEEecCcc
Confidence 89999999999999999999999999999999999999999999999999997642 4799999999999999988
Q ss_pred cCC-------------------CCCCCCceEEEEEEEEeecCCCCCCceEEEEEEcCC---------------------C
Q 001134 821 MSG-------------------TSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQ---------------------N 860 (1145)
Q Consensus 821 ~~~-------------------~s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~~---------------------g 860 (1145)
... .......|+|+|||+|.|. ++++|||+||+|... +
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~--~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (327)
T cd02664 214 VESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGY--SSESGHYFTYARDQTDADSTGQECPEPKDAEENDESK 291 (327)
T ss_pred ccccccccccccccccccccccccCCCceEEEEEEEEEccC--CCCCcceEEEEecCCccccccccccccccccccCCCC
Confidence 631 1123468999999999994 578999999999854 7
Q ss_pred cEEEEcCCcceeecccccCC-------CCcEEEEEE
Q 001134 861 KWFKVDDSTVTAVERERVLT-------EGAYMLLYA 889 (1145)
Q Consensus 861 kWy~fNDs~Vt~Vs~eeVls-------~~AYILFYe 889 (1145)
+||+|||+.|+++++++|.+ .+||||||+
T Consensus 292 ~W~~fnD~~V~~~~~~~v~~~~~~~~~~~aYlLfY~ 327 (327)
T cd02664 292 NWYLFNDSRVTFSSFESVQNVTSRFPKDTPYILFYE 327 (327)
T ss_pred CEEEEeCCceEECCHHHHHHhhCCCCCCCEEEEEeC
Confidence 89999999999999999976 799999996
No 7
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.2e-53 Score=496.35 Aligned_cols=345 Identities=20% Similarity=0.262 Sum_probs=268.6
Q ss_pred CCccchhhhhhccccCCcccccccccCccccCcccCCcCcchhhhhh---hcccCCcccCccccccCCCccchHHHHHHH
Q 001134 528 NGLKTSLWKAVDQFRGSKSSKQCLSVGCETAGRYSDKGLFSYELFVK---LYNWNKVELQPCGLINCGNSCYANVVLQCL 604 (1145)
Q Consensus 528 ~dLk~~~lk~~d~v~dp~LskhL~~~Gi~I~~~~keksLf~~E~~lk---l~~~~k~el~p~GL~NlGNTCYmNSVLQ~L 604 (1145)
...+-|++++++++.++.|..++. + +.+.+.++.+...+...+ .........|++||.|+|||||||||||+|
T Consensus 63 ~t~~~yc~~~~~~v~d~~l~~i~~--~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~G~vGL~NlGnTCYmNsvLQ~L 138 (440)
T cd02669 63 ETLKFYCLPDNYEIIDSSLDDIKY--V--LNPTYTKEQISDLDRDPKLSRDLDGKPYLPGFVGLNNIKNNDYANVIIQAL 138 (440)
T ss_pred CCCCEEEeCCCCEEeCccHHHHHH--H--hcCCCCHHHHHHhhhccccccccCCCCccCCccCccCCCCchHHHHHHHHH
Confidence 346677899999999999988774 1 222333344433333322 122223345789999999999999999999
Q ss_pred hCChhHHHHHhhcccccccccccchHHHHHHHHHHHHhcC---CCCCCHHHHHHHHHhhc-cccCCCccccHHHHHHHHH
Q 001134 605 AFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDG---KSPLSPIGILSRLQSIG-SQLGNGREEDAHEFLRYAI 680 (1145)
Q Consensus 605 ~~iP~Fr~~LL~~~~~~~~~~~~~cll~qL~kLf~~l~s~---k~~isP~~fl~~L~~i~-~~F~~g~QQDA~EFL~~LL 680 (1145)
+++|+||++|+...+.........+++++|..|+++++.. +..++|..|+.++.... +.|..+.||||+|||.+||
T Consensus 139 ~~~p~lr~~~l~~~~~~~~~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~l~~~~~~~f~~~~QqDA~EFl~~LL 218 (440)
T cd02669 139 SHVKPIRNFFLLYENYENIKDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQAVSKVSKKKFSITEQSDPVEFLSWLL 218 (440)
T ss_pred HCCHHHHHHHhhccccccccCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHHHHhhcccccCCcccCCHHHHHHHHH
Confidence 9999999999976544322224457999999999999865 47899999999998764 5788999999999999999
Q ss_pred HhhhhhhhhhhcCCCCCCCCccccccccccceEEeEEEEEcCCC---------------Ceeeeeeeeeeeeeeeecccc
Q 001134 681 DTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCH---------------GKSERQERMMDLTVEIEGDIG 745 (1145)
Q Consensus 681 D~L~~e~lk~~~~~~~~~~~~e~siI~~lF~G~l~s~ikC~~C~---------------~~S~~~E~f~~LsL~Ip~~~~ 745 (1145)
+.|++++... .....++|.++|+|+++..++|..|. ..+.+.++|++|+|+|+....
T Consensus 219 d~L~~~l~~~--------~~~~~~ii~~~F~G~l~~~~~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~ 290 (440)
T cd02669 219 NTLHKDLGGS--------KKPNSSIIHDCFQGKVQIETQKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPL 290 (440)
T ss_pred HHHHHHhccC--------CCCCCCcceeccCceEEEEEEeecccccccccccccccccccceeeeccceEEEecCCCCcc
Confidence 9999876321 12456799999999999999987654 346778999999999986410
Q ss_pred ----cHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeeccccc--cccccceEecCcc-cCCC
Q 001134 746 ----NLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSGK--FGKLNKSIQFPEI-LDLA 818 (1145)
Q Consensus 746 ----SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~~--~~KI~~~V~FPe~-LDLs 818 (1145)
....+|.++...|.|++ |.|+.|.....+.|+++|.++|+||+||||||.++. ..|+.+.|.||.. |||.
T Consensus 291 ~~~~~~~~~l~~~~l~e~L~k---y~~~~c~~~~~a~k~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~ 367 (440)
T cd02669 291 FKDGNEENIIPQVPLKQLLKK---YDGKTETELKDSLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLS 367 (440)
T ss_pred ccccccccccCcccHHHHHHh---cCCccceecccceEEEEEeeCCcEEEEEEecccCCCCccccCCCEEECCCCccchh
Confidence 11122222223333332 778889888999999999999999999999998754 4799999999986 8999
Q ss_pred CccCC---CCCCCCceEEEEEEEEeecCCCCCCceEEEEEEcC-CCcEEEEcCCcceeecccccCCCCcEEEEEE
Q 001134 819 PYMSG---TSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKST-QNKWFKVDDSTVTAVERERVLTEGAYMLLYA 889 (1145)
Q Consensus 819 ~y~~~---~s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~-~gkWy~fNDs~Vt~Vs~eeVls~~AYILFYe 889 (1145)
+|+.. ......+|+|+|||+|.|+ .+++|||+||+|+. +++||+|||+.|++++.++|+..+||||||+
T Consensus 368 ~y~~~~~~~~~~~~~Y~L~avI~H~G~--~~~sGHY~a~v~~~~~~~W~~fdD~~V~~v~~~~v~~~eaYll~Y~ 440 (440)
T cd02669 368 DYVHFDKPSLNLSTKYNLVANIVHEGT--PQEDGTWRVQLRHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440 (440)
T ss_pred hhhCccccccCCCceEEEEEEEEEecc--CCCCeeEEEEEEcCCCCeEEEEECCeeeEcCHHHhccCCceEEEeC
Confidence 99863 2234578999999999994 33899999999974 7899999999999999999999999999996
No 8
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.3e-52 Score=475.55 Aligned_cols=274 Identities=30% Similarity=0.522 Sum_probs=233.7
Q ss_pred cccCccccccCCCccchHHHHHHHhCChhHHHHHhhcccccccccccchHHHHHHHHH---HHHh-cCCCCCCHHHHHHH
Q 001134 581 VELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLI---LRAK-DGKSPLSPIGILSR 656 (1145)
Q Consensus 581 ~el~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~~~~~cll~qL~kLf---~~l~-s~k~~isP~~fl~~ 656 (1145)
...+++||.|+|||||||||||+|+++|+|++.+........ ...+++.++ ..+. .......|..|+..
T Consensus 20 ~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~-------~~~~~q~~~~~l~~~~~~~~~~~~P~~~~~~ 92 (332)
T cd02671 20 NLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLIS-------SVEQLQSSFLLNPEKYNDELANQAPRRLLNA 92 (332)
T ss_pred cCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhcccC-------cHHHHHHHHHHHHHHHhhcccccCHHHHHHH
Confidence 356789999999999999999999999999998765321110 112233222 2222 22345679999999
Q ss_pred HHhhccccCCCccccHHHHHHHHHHhhhhhhhhhhcCCCCCCCCccccccccccceEEeEEEEEcCCCCeeeeeeeeeee
Q 001134 657 LQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDL 736 (1145)
Q Consensus 657 L~~i~~~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~~~~e~siI~~lF~G~l~s~ikC~~C~~~S~~~E~f~~L 736 (1145)
++..++.|..+.||||+|||.+||+.|+. +|.++|+|++.++++|..|+..+.+.|+|++|
T Consensus 93 l~~~~~~f~~~~QQDA~EFl~~LLd~L~~-------------------~i~~~F~g~~~~~~~C~~C~~~s~~~E~f~~l 153 (332)
T cd02671 93 LREVNPMYEGYLQHDAQEVLQCILGNIQE-------------------LVEKDFQGQLVLRTRCLECETFTERREDFQDI 153 (332)
T ss_pred HHHhccccCCccccCHHHHHHHHHHHHHH-------------------HHHhhhceEEEEEEEeCCCCCeeceecccEEE
Confidence 99999999999999999999999999973 47889999999999999999999999999999
Q ss_pred eeeeeccc------------------ccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeecc
Q 001134 737 TVEIEGDI------------------GNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQ 798 (1145)
Q Consensus 737 sL~Ip~~~------------------~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~ 798 (1145)
+|+|++.. .+|++||+.|+++|.++|+|+|.|++|+.++.+.|+..|.++|+||+|||+||.
T Consensus 154 sL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~~~P~vL~i~LkRF~ 233 (332)
T cd02671 154 SVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFA 233 (332)
T ss_pred EEEeCCCcccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEecCCCEEEEEeeeec
Confidence 99998642 589999999999999999999999999999999999999999999999999998
Q ss_pred cc--------ccccccceEecCcccCCCCccCCCCCCCCceEEEEEEEEeecCCCCCCceEEEEEEcCCCcEEEEcCCcc
Q 001134 799 SG--------KFGKLNKSIQFPEILDLAPYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQNKWFKVDDSTV 870 (1145)
Q Consensus 799 ~~--------~~~KI~~~V~FPe~LDLs~y~~~~s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~~gkWy~fNDs~V 870 (1145)
+. ...|+++.|.||..|+|.++.... ....|+|+|||+|.|. +.++|||+|||| ||+|||+.|
T Consensus 234 ~~~~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~~--~~~~Y~L~~VI~H~G~--~~~~GHY~a~vr-----W~~fdD~~V 304 (332)
T cd02671 234 ANGSEFDCYGGLSKVNTPLLTPLKLSLEEWSTKP--KNDVYRLFAVVMHSGA--TISSGHYTAYVR-----WLLFDDSEV 304 (332)
T ss_pred cccccccccCCceecCccccCccccccccccCCC--CCCeEEEEEEEEEcCC--CCCCCeEEEEEE-----EEEEcCcce
Confidence 42 357999999999999998775432 3478999999999994 578999999999 999999999
Q ss_pred eeecccccC---------CCCcEEEEEE
Q 001134 871 TAVERERVL---------TEGAYMLLYA 889 (1145)
Q Consensus 871 t~Vs~eeVl---------s~~AYILFYe 889 (1145)
++++++++. ..+||||||+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 305 KVTEEKDFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred EEccHHHHHhhcCCCCCCCCceEEEEEC
Confidence 999877764 3589999995
No 9
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-52 Score=466.55 Aligned_cols=246 Identities=40% Similarity=0.714 Sum_probs=224.6
Q ss_pred ccccCCCccchHHHHHHHhCChhHHHHHhhcccccccccccchHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhccccCC
Q 001134 587 GLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSIGSQLGN 666 (1145)
Q Consensus 587 GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~~~~~cll~qL~kLf~~l~s~k~~isP~~fl~~L~~i~~~F~~ 666 (1145)
||.|+|||||||||||+|+++|+|+++++. .|..|+..+....+.|..
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~--------------------------------~P~~~~~~l~~~~~~f~~ 48 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE--------------------------------TPKELFSQVCRKAPQFKG 48 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH--------------------------------CHHHHHHHHHHhhHhhcC
Confidence 899999999999999999999999999864 677788888888889999
Q ss_pred CccccHHHHHHHHHHhhhhhhhhhhcCCCCCCCCccccccccccceEEeEEEEEcCCCCeeeeeeeeeeeeeeeec---c
Q 001134 667 GREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEG---D 743 (1145)
Q Consensus 667 g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~~~~e~siI~~lF~G~l~s~ikC~~C~~~S~~~E~f~~LsL~Ip~---~ 743 (1145)
++||||+|||.+||+.|+ ++|.++|+|++.++++|..|+..+.+.|+|+.|+|+++. .
T Consensus 49 ~~QqDA~Efl~~lld~l~-------------------~~i~~~F~G~~~~~i~C~~C~~~s~~~E~f~~L~Lp~~~~~~~ 109 (279)
T cd02667 49 YQQQDSHELLRYLLDGLR-------------------TFIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIKS 109 (279)
T ss_pred CchhhHHHHHHHHHHHHH-------------------HhhhhhcceEEEEEEEcCCCCCEeCccccceEEecCCCcccCC
Confidence 999999999999999997 257899999999999999999999999999999998753 3
Q ss_pred cccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeecccc---ccccccceEecCcccCCCCc
Q 001134 744 IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSG---KFGKLNKSIQFPEILDLAPY 820 (1145)
Q Consensus 744 ~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~---~~~KI~~~V~FPe~LDLs~y 820 (1145)
..+|++||+.|+.+|.++|+++|.|++|++ +.|+..|.++|+||+|||+||.++ ...|+++.|.||+.|||.+|
T Consensus 110 ~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a~k~~~i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP~~Ldl~~~ 186 (279)
T cd02667 110 ECSIESCLKQFTEVEILEGNNKFACENCTK---AKKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFPEILDLAPF 186 (279)
T ss_pred CCCHHHHHHhhcCeeEecCCCcccCCccCc---eeeEeEhhhCCCeEEEEEeccccCcccCceecCceEeCCCccchhhc
Confidence 469999999999999999999999999997 889999999999999999999875 34899999999999999999
Q ss_pred cCCC-----CCCCCceEEEEEEEEeecCCCCCCceEEEEEEcC----------------------CCcEEEEcCCcceee
Q 001134 821 MSGT-----SDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKST----------------------QNKWFKVDDSTVTAV 873 (1145)
Q Consensus 821 ~~~~-----s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~----------------------~gkWy~fNDs~Vt~V 873 (1145)
+... ......|+|+|||+|.|. .++|||+||+|.. +++||+|||+.|+++
T Consensus 187 ~~~~~~~~~~~~~~~Y~L~~vi~H~G~---~~~GHY~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~v 263 (279)
T cd02667 187 CDPKCNSSEDKSSVLYRLYGVVEHSGT---MRSGHYVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREV 263 (279)
T ss_pred cCccccccccCCCceEEEEEEEEEeCC---CCCCEeEEEEEcCccccccccccccccccccCCCCCCcEEEEECCccEEC
Confidence 8752 334578999999999994 4899999999974 579999999999999
Q ss_pred cccccCCCCcEEEEEE
Q 001134 874 ERERVLTEGAYMLLYA 889 (1145)
Q Consensus 874 s~eeVls~~AYILFYe 889 (1145)
+.++|++..||||||+
T Consensus 264 ~~~~v~~~~aYiLfYe 279 (279)
T cd02667 264 SLEEVLKSEAYLLFYE 279 (279)
T ss_pred CHHHhccCCcEEEEeC
Confidence 9999999999999996
No 10
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.1e-52 Score=465.98 Aligned_cols=283 Identities=28% Similarity=0.401 Sum_probs=247.5
Q ss_pred ccccCCCccchHHHHHHHhCChhHHHHHhhcccccc-cccccchHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhccccC
Q 001134 587 GLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKE-CAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSIGSQLG 665 (1145)
Q Consensus 587 GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~-~~~~~~cll~qL~kLf~~l~s~k~~isP~~fl~~L~~i~~~F~ 665 (1145)
||.|+|||||||||||+|+++|+|+++++....... ......+++++|++||..|+.....+.|..|+..++...+.|.
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~i~p~~~~~~l~~~~~~f~ 80 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQEPVPPIEFLQLLRMAFPQFA 80 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhCCCcCCcHHHHHHHHHHCcCcc
Confidence 899999999999999999999999999987554321 1234578999999999999988889999999999998888883
Q ss_pred ------CCccccHHHHHHHHHHhhhhhhhhhhcCCCCCCCCccccccccccceEEeEEEEEcCCC-Ceeeeeeeeeeeee
Q 001134 666 ------NGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCH-GKSERQERMMDLTV 738 (1145)
Q Consensus 666 ------~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~~~~e~siI~~lF~G~l~s~ikC~~C~-~~S~~~E~f~~LsL 738 (1145)
.++||||+|||.+||+.|++++.. .....++|.++|+|++.+.++|..|+ .++.+.|+|+.|+|
T Consensus 81 ~~~~~~~~~QqDA~EFl~~lld~L~~~~~~---------~~~~~~~i~~~F~g~~~~~~~C~~C~~~~~~~~e~f~~Lsl 151 (305)
T cd02657 81 EKQNQGGYAQQDAEECWSQLLSVLSQKLPG---------AGSKGSFIDQLFGIELETKMKCTESPDEEEVSTESEYKLQC 151 (305)
T ss_pred cccCCCCccccCHHHHHHHHHHHHHHHhcc---------cCCCCcHHHHhhceEEEEEEEcCCCCCCCccccccceEEEe
Confidence 459999999999999999987532 12345689999999999999999999 79999999999999
Q ss_pred eeecc--cccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeecccc----ccccccceEecC
Q 001134 739 EIEGD--IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSG----KFGKLNKSIQFP 812 (1145)
Q Consensus 739 ~Ip~~--~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~----~~~KI~~~V~FP 812 (1145)
+|++. ..+|+++|..++..+.. ..|+.|+....+.|+..|.++|+||+|||+||.++ ...|+.+.|.||
T Consensus 152 ~i~~~~~~~~l~~~L~~~~~~~~~-----~~~~~~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP 226 (305)
T cd02657 152 HISITTEVNYLQDGLKKGLEEEIE-----KHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFP 226 (305)
T ss_pred ecCCCcccccHHHHHHHhhhhhhh-----hcCcccCCCceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECC
Confidence 99875 46899999999976653 46899999999999999999999999999999864 346999999999
Q ss_pred cccCCCCccCCCCCCCCceEEEEEEEEeecCCCCCCceEEEEEEcCC-CcEEEEcCCcceeecccccCC-------CCcE
Q 001134 813 EILDLAPYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQ-NKWFKVDDSTVTAVERERVLT-------EGAY 884 (1145)
Q Consensus 813 e~LDLs~y~~~~s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~~-gkWy~fNDs~Vt~Vs~eeVls-------~~AY 884 (1145)
..|||.+|+. ...+|+|+|||+|.|. ++.+|||+||+|... ++||+|||+.|++++.++|+. ..||
T Consensus 227 ~~Ldl~~~~~----~~~~Y~L~~vI~H~G~--~~~~GHY~~~~~~~~~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~aY 300 (305)
T cd02657 227 FELDLYELCT----PSGYYELVAVITHQGR--SADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDWHIAY 300 (305)
T ss_pred ceEecccccC----CCCcEEEEEEEEecCC--CCCCcEEEEEEEcCCCCeEEEEECCceEEeCHHHHHhhcCCCCCceEE
Confidence 9999999986 3368999999999995 578999999999964 899999999999999999974 5899
Q ss_pred EEEEE
Q 001134 885 MLLYA 889 (1145)
Q Consensus 885 ILFYe 889 (1145)
||||+
T Consensus 301 iL~Y~ 305 (305)
T cd02657 301 ILLYK 305 (305)
T ss_pred EEEEC
Confidence 99996
No 11
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-53 Score=487.18 Aligned_cols=355 Identities=23% Similarity=0.388 Sum_probs=302.7
Q ss_pred ccceeeecccCCCCCCCccchhhhhhccccCCcccccccccCccccCccc-CCcCcchhhhh-hhcccCCc---------
Q 001134 513 SAMSAQIENSPSNVGNGLKTSLWKAVDQFRGSKSSKQCLSVGCETAGRYS-DKGLFSYELFV-KLYNWNKV--------- 581 (1145)
Q Consensus 513 ~af~~ql~e~~~~g~~dLk~~~lk~~d~v~dp~LskhL~~~Gi~I~~~~k-eksLf~~E~~l-kl~~~~k~--------- 581 (1145)
-.+.++|++|+.+| .|+|. +.+++++++|+|.+||.+|||+|..+.+ +|++.+.+... ..|.|...
T Consensus 225 hPLaVKLgsIs~dg-~Dvyc--Y~cDd~v~dPnl~~hl~hfGId~~~m~kteksl~elel~~N~i~Ew~~~~esg~~l~p 301 (763)
T KOG0944|consen 225 HPLAVKLGSISPDG-ADVYC--YDCDDEVRDPNLESHLSHFGIDMAKMDKTEKSLVELELDQNRIWEWEALEESGAPLEP 301 (763)
T ss_pred CceEEEecccCCCc-cceee--ecccccccCccHHHHHHhcCccHHHhccchhHHHHHHHHhhcccCceeeccCCCcccc
Confidence 34789999999999 88885 7788999999999999999999999988 99998887644 44444322
Q ss_pred --ccCccccccCCCccchHHHHHHHhCChhHHHHHhhcccc--cccccccchHHHHHHHHHHHHhcCC-----------C
Q 001134 582 --ELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHS--KECAKKDWCFTCELENLILRAKDGK-----------S 646 (1145)
Q Consensus 582 --el~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~--~~~~~~~~cll~qL~kLf~~l~s~k-----------~ 646 (1145)
..+++||+|+||+||||||||+|+.+|.|...++...+. ..+..+.++|.|||.+|...|.+++ +
T Consensus 302 ~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qn 381 (763)
T KOG0944|consen 302 LFGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQN 381 (763)
T ss_pred ccCCCccceeecCcchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccccC
Confidence 235699999999999999999999999999988765322 3344788999999999999887642 5
Q ss_pred CCCHHHHHHHHHhhccccCCCccccHHHHHHHHHHhhhhhhhhhhcCCCCCCCCccccccccccceEEeEEEEEcCCCCe
Q 001134 647 PLSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGK 726 (1145)
Q Consensus 647 ~isP~~fl~~L~~i~~~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~~~~e~siI~~lF~G~l~s~ikC~~C~~~ 726 (1145)
.|+|..|+..+++-++.|+..+||||+|||.+||+.|.+-... .-..+.++|.+.++.++.|..|+++
T Consensus 382 gIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~rs------------~~~nptd~frF~ve~Rv~C~~c~kV 449 (763)
T KOG0944|consen 382 GISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSRS------------SLPNPTDLFRFEVEDRVSCLGCRKV 449 (763)
T ss_pred CcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhcccc------------cCCCHHHHHHhhhhhhhhhhccccc
Confidence 7999999999999999999999999999999999999753211 0134789999999999999999999
Q ss_pred eeeeeeeeeeeeeeec-----ccccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeeccccc
Q 001134 727 SERQERMMDLTVEIEG-----DIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSGK 801 (1145)
Q Consensus 727 S~~~E~f~~LsL~Ip~-----~~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~~ 801 (1145)
++.++..+.|.|+++. ....+..||+.|+.+ .+++ |.|..|+.+..|.|+..|++||+||+||+.||.+..
T Consensus 450 rYs~~~~~~i~lpv~~~~~v~~~v~~~~cleaff~p-q~~d---f~s~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~~d 525 (763)
T KOG0944|consen 450 RYSYESEYLIQLPVPMTNEVREKVPISACLEAFFEP-QVDD---FWSTACGEKKGATKTTRFKSFPDYLIIQVGRFTLQD 525 (763)
T ss_pred cccchhheeeEeeccccccccccCCHHHHHHHhcCC-cchh---hhhHhhcCccccccccccccCCceEEEEeeEEEecC
Confidence 9999999999999974 346999999999999 4444 999999999999999999999999999999998754
Q ss_pred --cccccceEecCcccCCCCccCCC-------------------------------------------------------
Q 001134 802 --FGKLNKSIQFPEILDLAPYMSGT------------------------------------------------------- 824 (1145)
Q Consensus 802 --~~KI~~~V~FPe~LDLs~y~~~~------------------------------------------------------- 824 (1145)
.+|+...|++|+.|||+.|+..+
T Consensus 526 w~pkKld~~iempe~ldls~~rs~g~~p~ee~lpde~~~~~~~~~d~s~i~qL~~MGFp~eac~rAly~tgN~~aEaA~N 605 (763)
T KOG0944|consen 526 WVPKKLDVSIEMPEELDLSSYRSKGLQPGEEALPDEAPETSEFAADRSVISQLVEMGFPEEACRRALYYTGNSGAEAASN 605 (763)
T ss_pred ceeeeeccceecchhhchhhhhhcCCCCcccccCCcCcccCccchhHHHHHHHHHcCCCHHHHHHHHhhhcCccHHHHHH
Confidence 48999999999999998764210
Q ss_pred --------------------------------------------------------------------------------
Q 001134 825 -------------------------------------------------------------------------------- 824 (1145)
Q Consensus 825 -------------------------------------------------------------------------------- 824 (1145)
T Consensus 606 Wl~~HMdDpd~~~p~vvp~~~~~a~~~~~~e~~v~si~smGf~~~qa~~aL~~~n~nveravDWif~h~d~~~ed~~~~~ 685 (763)
T KOG0944|consen 606 WLMEHMDDPDIDDPFVVPGNSPKADAREVDEESVASIVSMGFSRNQAIKALKATNNNVERAVDWIFSHMDIPVEDAAEGE 685 (763)
T ss_pred HHHHhccCcccCCceecCCCCCccccCCCChhHheeeeeecCcHHHHHHHHHhcCccHHHHHHHHHhcccccccccCcCC
Confidence
Q ss_pred ---------------CCCCCceEEEEEEEEeecCCCCCCceEEEEEEcCCCcEEEEcCCcceeecccccCCCCcEEEEEE
Q 001134 825 ---------------SDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQNKWFKVDDSTVTAVERERVLTEGAYMLLYA 889 (1145)
Q Consensus 825 ---------------s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~~gkWy~fNDs~Vt~Vs~eeVls~~AYILFYe 889 (1145)
.+...+|.|+|||+|.|+ ++++|||||++|+ .|+|++|||++|- ..++..++.+||+||+
T Consensus 686 s~~~~~~~~~~~~~~~dg~~~Y~L~a~IsHmGt--s~~sGHYV~hirK-egkWVlfNDeKv~--~S~~ppK~lgYvY~y~ 760 (763)
T KOG0944|consen 686 SSSAIESESTPSGTGKDGPGKYALFAFISHMGT--SAHSGHYVCHIRK-EGKWVLFNDEKVA--ASQEPPKDLGYVYLYT 760 (763)
T ss_pred CCCcchhhcCCcccCCCCCcceeEEEEEecCCC--CCCCcceEEEEee-cCcEEEEcchhhh--hccCChhhcceEEEEE
Confidence 012346999999999997 8999999999999 6999999999997 4456688999999999
Q ss_pred Ee
Q 001134 890 RC 891 (1145)
Q Consensus 890 R~ 891 (1145)
|+
T Consensus 761 R~ 762 (763)
T KOG0944|consen 761 RI 762 (763)
T ss_pred ec
Confidence 96
No 12
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9e-52 Score=464.78 Aligned_cols=275 Identities=26% Similarity=0.369 Sum_probs=239.9
Q ss_pred ccccCCCccchHHHHHHHhCChhHHHHHhhccccc--ccccccchHHHHHHHHHHHHhcC---------------CCCCC
Q 001134 587 GLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSK--ECAKKDWCFTCELENLILRAKDG---------------KSPLS 649 (1145)
Q Consensus 587 GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~--~~~~~~~cll~qL~kLf~~l~s~---------------k~~is 649 (1145)
||.|+|||||||||||+|+++|+||++|+...+.. ....+..+++++|++|+..++.. +.++.
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~ 80 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK 80 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence 89999999999999999999999999997632221 22245678999999999888653 24689
Q ss_pred HHHHHHHHHhhccccCCCccccHHHHHHHHHHhhhhhhhhhhcCCCCCCCCccccccccccceEEeEEEEEcCCCCeeee
Q 001134 650 PIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSER 729 (1145)
Q Consensus 650 P~~fl~~L~~i~~~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~~~~e~siI~~lF~G~l~s~ikC~~C~~~S~~ 729 (1145)
|..|+..++...+.|..+.||||+|||++||+.|++++... ....+.++|+|.+..+++|..|+.++..
T Consensus 81 p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~-----------~~~~~~~~f~~~~~~~i~C~~C~~~s~~ 149 (311)
T cd02658 81 PSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKN-----------LGLNPNDLFKFMIEDRLECLSCKKVKYT 149 (311)
T ss_pred cHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhccc-----------ccCCchhheEEEeeEEEEcCCCCCEEEe
Confidence 99999999999999999999999999999999999865421 1234789999999999999999999999
Q ss_pred eeeeeeeeeeeecc-------------cccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeee
Q 001134 730 QERMMDLTVEIEGD-------------IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKR 796 (1145)
Q Consensus 730 ~E~f~~LsL~Ip~~-------------~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkR 796 (1145)
.+++..|+|+++.. ..+|+++|+.|+..|.++ +.|++|++++.+.|+..|.++|+||+|||+|
T Consensus 150 ~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~----~~C~~C~~~~~a~k~~~i~~lP~vLii~LkR 225 (311)
T cd02658 150 SELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE----DFCSTCKEKTTATKTTGFKTFPDYLVINMKR 225 (311)
T ss_pred ecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCccccc----ccccCCCCcccEEEEEEeecCCceEEEEeEE
Confidence 99999999998753 248999999999999997 6899999999999999999999999999999
Q ss_pred cccc---ccccccceEecCcccCCCCccCCCCCCCCceEEEEEEEEeecCCCCCCceEEEEEEcC---CCcEEEEcCCcc
Q 001134 797 FQSG---KFGKLNKSIQFPEILDLAPYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKST---QNKWFKVDDSTV 870 (1145)
Q Consensus 797 F~~~---~~~KI~~~V~FPe~LDLs~y~~~~s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~---~gkWy~fNDs~V 870 (1145)
|.+. ...|+...|.||..| ....|+|+|||+|.|. +.++|||+||+|.. .++||+|||+.|
T Consensus 226 F~~~~~~~~~Ki~~~v~~p~~l-----------~~~~Y~L~~vI~H~G~--~~~~GHY~~~vk~~~~~~~~W~~fnD~~V 292 (311)
T cd02658 226 FQLLENWVPKKLDVPIDVPEEL-----------GPGKYELIAFISHKGT--SVHSGHYVAHIKKEIDGEGKWVLFNDEKV 292 (311)
T ss_pred EEecCCCceEeeccccccCCcC-----------CCCcEEEEEEEEccCC--CCCCcceEEEEeCCCCCCCCEEEecCcee
Confidence 9873 236999999999877 2257999999999994 57899999999985 289999999999
Q ss_pred eeecccccCCCCcEEEEEE
Q 001134 871 TAVERERVLTEGAYMLLYA 889 (1145)
Q Consensus 871 t~Vs~eeVls~~AYILFYe 889 (1145)
++++..+|++..||||||+
T Consensus 293 ~~~~~~~~~~~~~YilfY~ 311 (311)
T cd02658 293 VASQDPPEMKKLGYIYFYQ 311 (311)
T ss_pred EECCcccccCCcceEEEEC
Confidence 9999999999999999996
No 13
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.2e-51 Score=461.16 Aligned_cols=294 Identities=34% Similarity=0.536 Sum_probs=247.7
Q ss_pred CccccccCCCccchHHHHHHHhCChhHHHHHhhcccccccccccchHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHhh-c
Q 001134 584 QPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKS-PLSPIGILSRLQSI-G 661 (1145)
Q Consensus 584 ~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~~~~~cll~qL~kLf~~l~s~k~-~isP~~fl~~L~~i-~ 661 (1145)
|++||.|+||||||||+||+|+++|+|+++++....... .....++.++|+.||.+|..... .+.|..+. .+..+ .
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~~-~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~-~~~~~~~ 78 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTED-DDDNKSVPLALQRLFLFLQLSESPVKTTELTD-KTRSFGW 78 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCccc-CcccccHHHHHHHHHHHHHhCCccccCcchhh-eeccCCC
Confidence 579999999999999999999999999999987532211 23456799999999999886543 33443332 22222 3
Q ss_pred cccCCCccccHHHHHHHHHHhhhhhhhhhhcCCCCCCCCccccccccccceEEeEEEEEcCCCCeeeeeeeeeeeeeeee
Q 001134 662 SQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIE 741 (1145)
Q Consensus 662 ~~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~~~~e~siI~~lF~G~l~s~ikC~~C~~~S~~~E~f~~LsL~Ip 741 (1145)
..|..+.||||+|||.+||+.|+.++... ...++|.++|+|++...++|..|+..+...++|+.|+|+++
T Consensus 79 ~~~~~~~QqDa~Efl~~ll~~l~~~~~~~----------~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~ 148 (334)
T cd02659 79 DSLNTFEQHDVQEFFRVLFDKLEEKLKGT----------GQEGLIKNLFGGKLVNYIICKECPHESEREEYFLDLQVAVK 148 (334)
T ss_pred CCCCcccchhHHHHHHHHHHHHHHHhccC----------cccchhhhhCceEEEeEEEecCCCceecccccceEEEEEcC
Confidence 46788999999999999999999765321 22357899999999999999999999999999999999998
Q ss_pred cccccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeecccc----ccccccceEecCcccCC
Q 001134 742 GDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSG----KFGKLNKSIQFPEILDL 817 (1145)
Q Consensus 742 ~~~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~----~~~KI~~~V~FPe~LDL 817 (1145)
+ ..+|+++|..|+.+|.+++.+.|.|++|+++..+.++..|.++|+||+|||+||.++ ...|+...|.||..|||
T Consensus 149 ~-~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl 227 (334)
T cd02659 149 G-KKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDM 227 (334)
T ss_pred C-CCCHHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCceecC
Confidence 5 478999999999999999999999999999999999999999999999999999863 34799999999999999
Q ss_pred CCccCCC-----------CCCCCceEEEEEEEEeecCCCCCCceEEEEEEcC-CCcEEEEcCCcceeecccccC------
Q 001134 818 APYMSGT-----------SDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKST-QNKWFKVDDSTVTAVERERVL------ 879 (1145)
Q Consensus 818 s~y~~~~-----------s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~-~gkWy~fNDs~Vt~Vs~eeVl------ 879 (1145)
.+|+... ......|+|+|||+|.| +..+|||+||+|.. +++||+|||+.|+++++++|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G---~~~~GHY~~~vk~~~~~~W~~~nD~~V~~i~~~~v~~~~~g~ 304 (334)
T cd02659 228 EPYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSG---DAHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFGG 304 (334)
T ss_pred ccccccccccccccccccCCCCeeEEEEEEEEecC---CCCCCCeEEEEECCCCCceEEEeCcccEECCHHHHHHHcCCC
Confidence 9988643 23346899999999999 46889999999984 689999999999999998885
Q ss_pred ----------------CCCcEEEEEEEeCC
Q 001134 880 ----------------TEGAYMLLYARCSP 893 (1145)
Q Consensus 880 ----------------s~~AYILFYeR~s~ 893 (1145)
...||||||+|++|
T Consensus 305 ~~~~~~~~~~~~~~~~~~~ay~l~Y~~~~~ 334 (334)
T cd02659 305 EETQKTYDSGPRAFKRTTNAYMLFYERKSP 334 (334)
T ss_pred ccccccccccccccccccceEEEEEEEeCC
Confidence 24699999999874
No 14
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-47 Score=438.50 Aligned_cols=307 Identities=29% Similarity=0.508 Sum_probs=265.6
Q ss_pred cCccccccCCCccchHHHHHHHhCChhHHHHHhhccccccccc-----ccchHHHHHHHHHHHHhcCC-CCCCHHHHHHH
Q 001134 583 LQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAK-----KDWCFTCELENLILRAKDGK-SPLSPIGILSR 656 (1145)
Q Consensus 583 l~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~~-----~~~cll~qL~kLf~~l~s~k-~~isP~~fl~~ 656 (1145)
.|.+||.|+||||||||.||||.|++.+|+||+...+....+. ...-++.++..|+.++..++ .++.|..|+..
T Consensus 263 ~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~fK~t 342 (823)
T COG5560 263 AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKT 342 (823)
T ss_pred ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHHHHHH
Confidence 4789999999999999999999999999999997655544432 23456778888888877654 68999999999
Q ss_pred HHhhccccCCCccccHHHHHHHHHHhhhhhhhhhhcCCCCC----------------------CCCccccccccccceEE
Q 001134 657 LQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASG----------------------PLEDETTLIGLTFGGYL 714 (1145)
Q Consensus 657 L~~i~~~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~----------------------~~~~e~siI~~lF~G~l 714 (1145)
|+.++..|.++.|||.+||+.+|||.||+.+.+........ ....+.++|.++|.|.+
T Consensus 343 IG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgmy 422 (823)
T COG5560 343 IGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMY 422 (823)
T ss_pred HhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Confidence 99999999999999999999999999999876433322111 12347899999999999
Q ss_pred eEEEEEcCCCCeeeeeeeeeeeeeeeec----------------------------------------------------
Q 001134 715 RSKIKCTKCHGKSERQERMMDLTVEIEG---------------------------------------------------- 742 (1145)
Q Consensus 715 ~s~ikC~~C~~~S~~~E~f~~LsL~Ip~---------------------------------------------------- 742 (1145)
++++.|..|+.++..++||++|+||+|-
T Consensus 423 KSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v~ 502 (823)
T COG5560 423 KSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYGKLGCFEIKVM 502 (823)
T ss_pred hceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHHHHHHHHHHHhccCCccceeEE
Confidence 9999999999999999999999998740
Q ss_pred --------------------------------------------------------------------------------
Q 001134 743 -------------------------------------------------------------------------------- 742 (1145)
Q Consensus 743 -------------------------------------------------------------------------------- 742 (1145)
T Consensus 503 ~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~pflqlnv~~~~~i~~kLvkE~ 582 (823)
T COG5560 503 CIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDPFLQLNVLIKASIYDKLVKEF 582 (823)
T ss_pred EEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCcceEEEeecchhhHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 001134 743 -------------------------------------------------------------------------------- 742 (1145)
Q Consensus 743 -------------------------------------------------------------------------------- 742 (1145)
T Consensus 583 ~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~vvi~cew~ek~y~~lFsy~~l 662 (823)
T COG5560 583 EELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSYDPL 662 (823)
T ss_pred HHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcceEEeeeccccchhhhhcCCcc
Confidence
Q ss_pred ----------ccccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeeccccc--cccccceEe
Q 001134 743 ----------DIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSGK--FGKLNKSIQ 810 (1145)
Q Consensus 743 ----------~~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~~--~~KI~~~V~ 810 (1145)
...+|++||+.|.++|.|.-.+.++|+.|+....|.|++.|.++|.||+||||||+..+ ..||.+-|+
T Consensus 663 w~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~rsfrdKiddlVe 742 (823)
T COG5560 663 WTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVE 742 (823)
T ss_pred chhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcccchhhhhhhhc
Confidence 01489999999999999998899999999999999999999999999999999998654 379999999
Q ss_pred cC-cccCCCCccCCCCCCCCceEEEEEEEEeecCCCCCCceEEEEEEcC-CCcEEEEcCCcceeecccccCCCCcEEEEE
Q 001134 811 FP-EILDLAPYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKST-QNKWFKVDDSTVTAVERERVLTEGAYMLLY 888 (1145)
Q Consensus 811 FP-e~LDLs~y~~~~s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~-~gkWy~fNDs~Vt~Vs~eeVls~~AYILFY 888 (1145)
|| ..|||..+...-.+..-.|.|+||=.|+| ...+|||+||+|+. +++||+|||++|+++.+++.....||+|||
T Consensus 743 yPiddldLs~~~~~~~~p~liydlyavDNHyg---glsgGHYtAyarn~~n~~wy~fdDsritevdped~vtssaYvLFy 819 (823)
T COG5560 743 YPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYG---GLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFY 819 (823)
T ss_pred cccccccccceEEeecCcceEEEeeecccccc---ccCCcceeeeeecccCCceEEecCccccccCccccccceeEEEEE
Confidence 99 78999987765444447899999999999 46689999999997 569999999999999999999999999999
Q ss_pred EEeC
Q 001134 889 ARCS 892 (1145)
Q Consensus 889 eR~s 892 (1145)
+|++
T Consensus 820 rrk~ 823 (823)
T COG5560 820 RRKS 823 (823)
T ss_pred EecC
Confidence 9974
No 15
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.2e-46 Score=406.00 Aligned_cols=210 Identities=40% Similarity=0.707 Sum_probs=190.1
Q ss_pred ccccCCCccchHHHHHHHhCChhHHHHHhhcccccccccccchHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhccccCC
Q 001134 587 GLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSIGSQLGN 666 (1145)
Q Consensus 587 GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~~~~~cll~qL~kLf~~l~s~k~~isP~~fl~~L~~i~~~F~~ 666 (1145)
||.|+||||||||+||+|+++|+||+++....
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 89999999999999999999999999876311
Q ss_pred CccccHHHHHHHHHHhhhhhhhhhhcCCCCCCCCccccccccccceEEeEEEEEcCCCCeee-eeeeeeeeeeeeecc--
Q 001134 667 GREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSE-RQERMMDLTVEIEGD-- 743 (1145)
Q Consensus 667 g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~~~~e~siI~~lF~G~l~s~ikC~~C~~~S~-~~E~f~~LsL~Ip~~-- 743 (1145)
.||||+|||..||+.|+. .+.++|.|++.+.++|..|+..+. +.|+|+.|+|+|+..
T Consensus 33 -~QqDa~EFl~~ll~~l~~-------------------~i~~~F~g~~~~~i~C~~C~~~s~~~~e~f~~LsL~ip~~~~ 92 (240)
T cd02662 33 -EQQDAHELFQVLLETLEQ-------------------LLKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQSS 92 (240)
T ss_pred -hhcCHHHHHHHHHHHHHH-------------------hccCccccEEEEEEEeCCCCCccCcceeeeeeeEecccccCC
Confidence 799999999999999982 368899999999999999999866 599999999999975
Q ss_pred --cccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeeccccc---cccccceEecCcccCCC
Q 001134 744 --IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSGK---FGKLNKSIQFPEILDLA 818 (1145)
Q Consensus 744 --~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~~---~~KI~~~V~FPe~LDLs 818 (1145)
..+|+++|..|+.+|.+++ |.|++| +..|.++|+||+|||+||.++. ..|+++.|.||+.|
T Consensus 93 ~~~~sl~~~L~~~~~~E~l~~---~~C~~C--------~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~~l--- 158 (240)
T cd02662 93 GSGTTLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPERL--- 158 (240)
T ss_pred CCCCCHHHHHHHhcCcccccC---cCCCCC--------eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCCcc---
Confidence 4799999999999999987 999999 5789999999999999997543 47999999999988
Q ss_pred CccCCCCCCCCceEEEEEEEEeecCCCCCCceEEEEEEcC---------------------CCcEEEEcCCcceeecccc
Q 001134 819 PYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKST---------------------QNKWFKVDDSTVTAVERER 877 (1145)
Q Consensus 819 ~y~~~~s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~---------------------~gkWy~fNDs~Vt~Vs~ee 877 (1145)
....|+|+|||+|.|. ..+|||+||+|.. .++||+|||+.|+++++++
T Consensus 159 --------~~~~Y~L~avi~H~G~---~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~ 227 (240)
T cd02662 159 --------PKVLYRLRAVVVHYGS---HSSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVSESE 227 (240)
T ss_pred --------CCceEEEEEEEEEecc---CCCceEEEEEeCCCcccccccccccccccccCccCCCEEEEechheEEeCHHH
Confidence 2368999999999994 5899999999985 3899999999999999999
Q ss_pred c-CCCCcEEEEEE
Q 001134 878 V-LTEGAYMLLYA 889 (1145)
Q Consensus 878 V-ls~~AYILFYe 889 (1145)
| ...+||||||+
T Consensus 228 v~~~~~aY~LfYe 240 (240)
T cd02662 228 VLEQKSAYMLFYE 240 (240)
T ss_pred HhhCCCEEEEEeC
Confidence 9 88999999996
No 16
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-45 Score=393.53 Aligned_cols=306 Identities=25% Similarity=0.394 Sum_probs=235.8
Q ss_pred ccCccccccCCCccchHHHHHHHhCChhHHHHHhh-----cccccccccc-cchHHHHHHHHHHHHh-cCCCCCCHHHHH
Q 001134 582 ELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQ-----GLHSKECAKK-DWCFTCELENLILRAK-DGKSPLSPIGIL 654 (1145)
Q Consensus 582 el~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~-----~~~~~~~~~~-~~cll~qL~kLf~~l~-s~k~~isP~~fl 654 (1145)
...|.||.|+|||||||++||||+.+.++...|+. .........+ ......+|..|...+. .+...|+|+.|+
T Consensus 68 n~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~nF~ 147 (415)
T COG5533 68 NLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPRNFI 147 (415)
T ss_pred ccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchHHHH
Confidence 45789999999999999999999999999985443 2222222222 2245556666665443 345679999999
Q ss_pred HHHHhhccccCCCccccHHHHHHHHHHhhhhhhhhhhcCCCCCC-------------------------CCccccccccc
Q 001134 655 SRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGP-------------------------LEDETTLIGLT 709 (1145)
Q Consensus 655 ~~L~~i~~~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~-------------------------~~~e~siI~~l 709 (1145)
..++.+++.|....|||+|||+.++||.||+++..........+ +..+.++|.+.
T Consensus 148 ~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~~~ 227 (415)
T COG5533 148 DILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVAKT 227 (415)
T ss_pred HHHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHHHH
Confidence 99999999999999999999999999999987643322211111 12346889999
Q ss_pred cceEEeEEEEEcCCCCeeeeeeeeeeeeeeeecc-cccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCc
Q 001134 710 FGGYLRSKIKCTKCHGKSERQERMMDLTVEIEGD-IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPN 788 (1145)
Q Consensus 710 F~G~l~s~ikC~~C~~~S~~~E~f~~LsL~Ip~~-~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~ 788 (1145)
|.|+..++++|..|+++++++.+|..|.+|++.- ...|+|||..|.+.|.++|++.|.|++|+.++.++|++.|.++|+
T Consensus 228 f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~K~~~I~~lP~ 307 (415)
T COG5533 228 FFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRMEILVLPD 307 (415)
T ss_pred HhhhhhhhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhcccccchheEEEEecCc
Confidence 9999999999999999999999999999999742 246999999999999999999999999999999999999999999
Q ss_pred eEEEeeeecccc--ccccccceE----ecCcccCCC-CccCCCCCCCCceEEEEEEEEeecCCCCCCceEEEEEEcCCCc
Q 001134 789 ILTIALKRFQSG--KFGKLNKSI----QFPEILDLA-PYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQNK 861 (1145)
Q Consensus 789 VLiI~LkRF~~~--~~~KI~~~V----~FPe~LDLs-~y~~~~s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~~gk 861 (1145)
+|||||+||.-. ...||+.+- .+|-+.... .|-.+..-.+.+|.|+|||||.| +.++|||+++|+. ++.
T Consensus 308 ~LII~i~RF~i~V~~~~kiD~p~gw~~~~~~e~~v~~~f~~~~~~~P~~Y~L~gv~Ch~G---~L~gGHY~s~v~~-~~~ 383 (415)
T COG5533 308 VLIIHISRFHISVMGRKKIDTPQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNG---TLNGGHYFSEVKR-SGT 383 (415)
T ss_pred eEEEEeeeeeEEeecccccCCCcchhccCCceecccccccCCCCCCccceeEEEEEeecc---eecCceeEEeeee-cCc
Confidence 999999999621 123333221 111111110 11112222346899999999999 5779999999998 799
Q ss_pred EEEEcCCcceeecccccC-CCCcEEEEEEEe
Q 001134 862 WFKVDDSTVTAVERERVL-TEGAYMLLYARC 891 (1145)
Q Consensus 862 Wy~fNDs~Vt~Vs~eeVl-s~~AYILFYeR~ 891 (1145)
|+.|||+.|++++...-. ...+|||||+|.
T Consensus 384 W~~~dDs~vr~~~~~t~~~~pSsYilFY~r~ 414 (415)
T COG5533 384 WNVYDDSQVRKGSRTTSGSHPSSYILFYTRS 414 (415)
T ss_pred eEEechhheeeccceecccCCcceEEEEEec
Confidence 999999999999755433 357899999996
No 17
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.8e-43 Score=379.50 Aligned_cols=220 Identities=41% Similarity=0.719 Sum_probs=200.8
Q ss_pred ccccCCCccchHHHHHHHhCChhHHHHHhhcccccccccccchHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhccccCC
Q 001134 587 GLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSIGSQLGN 666 (1145)
Q Consensus 587 GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~~~~~cll~qL~kLf~~l~s~k~~isP~~fl~~L~~i~~~F~~ 666 (1145)
||.|.||+|||||+||+|++
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~------------------------------------------------------------ 20 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20 (230)
T ss_pred CccccCcchhhhHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999987
Q ss_pred CccccHHHHHHHHHHhhhhhhhhhhcCCCCCCCCccccccccccceEEeEEEEEcCCCCeeeeeeeeeeeeeeeecc---
Q 001134 667 GREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEGD--- 743 (1145)
Q Consensus 667 g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~~~~e~siI~~lF~G~l~s~ikC~~C~~~S~~~E~f~~LsL~Ip~~--- 743 (1145)
.||||+||+++||+.|+ ++|.++|+|++..+++|..|+..+...++|+.|+|++|..
T Consensus 21 -~QqDa~Ef~~~ll~~l~-------------------~~i~~~F~~~~~~~~~C~~C~~~~~~~e~~~~l~l~ip~~~~~ 80 (230)
T cd02674 21 -DQQDAQEFLLFLLDGLH-------------------SIIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGSGD 80 (230)
T ss_pred -hhhhHHHHHHHHHHHHh-------------------hhHHheeCCEEeCcEEcCCCcCCcceecceeEEEEecccccCC
Confidence 79999999999999997 2578999999999999999999999999999999999864
Q ss_pred --cccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeecccc--ccccccceEecC-cccCCC
Q 001134 744 --IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSG--KFGKLNKSIQFP-EILDLA 818 (1145)
Q Consensus 744 --~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~--~~~KI~~~V~FP-e~LDLs 818 (1145)
..+|+++|+.|+.++.+++.+++.|++|++...+.++..|.++|+||+|+|+||.+. ...|+.+.|.|| +.|||.
T Consensus 81 ~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~~~~~K~~~~v~~~~~~l~l~ 160 (230)
T cd02674 81 APKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLT 160 (230)
T ss_pred CCCCCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCCCCcccCCceEeccccccccc
Confidence 359999999999999999999999999999999999999999999999999999875 358999999999 578999
Q ss_pred CccC-CCCCCCCceEEEEEEEEeecCCCCCCceEEEEEEcCC-CcEEEEcCCcceeecccccCCCCcEEEEEE
Q 001134 819 PYMS-GTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQ-NKWFKVDDSTVTAVERERVLTEGAYMLLYA 889 (1145)
Q Consensus 819 ~y~~-~~s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~~-gkWy~fNDs~Vt~Vs~eeVls~~AYILFYe 889 (1145)
+|+. .......+|+|+|||+|.|. ..+|||+||+|... ++||+|||+.|++++.+++....||||||+
T Consensus 161 ~~~~~~~~~~~~~Y~L~~vI~H~G~---~~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~~~~~~~~YlL~Y~ 230 (230)
T cd02674 161 PYVDTRSFTGPFKYDLYAVVNHYGS---LNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230 (230)
T ss_pred cccCcccCCCCceEEEEEEEEeeCC---CCCcEEEEEEECCCCCceEEEcCCeEEEcCHHHccCCCceEEEeC
Confidence 8853 23344578999999999994 48999999999964 899999999999999999988999999996
No 18
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-43 Score=412.73 Aligned_cols=305 Identities=29% Similarity=0.478 Sum_probs=259.2
Q ss_pred CcccCccccccCCCccchHHHHHHHhCChhHHHHHhhcccccccc--cccchHHHHHHHHHHHHhcC-CCCCCHHHHHHH
Q 001134 580 KVELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECA--KKDWCFTCELENLILRAKDG-KSPLSPIGILSR 656 (1145)
Q Consensus 580 k~el~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~--~~~~cll~qL~kLf~~l~s~-k~~isP~~fl~~ 656 (1145)
+...+.+||.|-|+|||||+++|-|.++|-++.-++...+..... .....++|++|.+|..+... -+++.|..|...
T Consensus 90 Rpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~s~lQyyVPeg~Wk~ 169 (944)
T KOG1866|consen 90 RPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAASQLQYYVPEGFWKQ 169 (944)
T ss_pred CCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHH
Confidence 345567999999999999999999999999999876544441111 11223899999999877644 478999999999
Q ss_pred HHhhccccCCCccccHHHHHHHHHHhhhhhhhhhhcCCCCCCCCccccccccccceEEeEEEEEcCCCCeeeeeeeeeee
Q 001134 657 LQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDL 736 (1145)
Q Consensus 657 L~~i~~~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~~~~e~siI~~lF~G~l~s~ikC~~C~~~S~~~E~f~~L 736 (1145)
.+.....+...+||||.|||..|||.|++.+++.. ...++.+.|+|.+..+-.|..|.+.-...|+|+.|
T Consensus 170 Fr~~~~pln~reqhDA~eFf~sLld~~De~LKklg----------~p~lf~n~f~G~ysdqKIC~~CpHRY~~eE~F~~l 239 (944)
T KOG1866|consen 170 FRLWGEPLNLREQHDALEFFNSLLDSLDEALKKLG----------HPQLFSNTFGGSYSDQKICQGCPHRYECEESFTTL 239 (944)
T ss_pred hhccCCccchHhhhhHHHHHHHHHHHHHHHHHHhC----------CcHHHHHHhcCccchhhhhccCCcccCccccceee
Confidence 98888888899999999999999999998765432 23478899999999999999999999999999999
Q ss_pred eeeeecccccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeecccc----ccccccceEecC
Q 001134 737 TVEIEGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSG----KFGKLNKSIQFP 812 (1145)
Q Consensus 737 sL~Ip~~~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~----~~~KI~~~V~FP 812 (1145)
+|.|. ..+|+++|++|.+.|+++|.|.|+|++|++++...|++.|++||.+|.||||||.++ ...|-++.++||
T Consensus 240 ~l~i~--~~nLeesLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP 317 (944)
T KOG1866|consen 240 NLDIR--HQNLEESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFP 317 (944)
T ss_pred eeecc--cchHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccc
Confidence 99998 479999999999999999999999999999999999999999999999999999864 347999999999
Q ss_pred cccCCCCccCC-----------------CCCCCCceEEEEEEEEeecCCCCCCceEEEEEEcC----CCcEEEEcCCcce
Q 001134 813 EILDLAPYMSG-----------------TSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKST----QNKWFKVDDSTVT 871 (1145)
Q Consensus 813 e~LDLs~y~~~-----------------~s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~----~gkWy~fNDs~Vt 871 (1145)
.+|||.||+.. ...++.+|+|+|||+|.| .+..|||++||+.. .++||+|||-.|+
T Consensus 318 ~~ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSG---qAsaGHYySfIk~rr~~~~~kWykfnD~~Vt 394 (944)
T KOG1866|consen 318 RELDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSG---QASAGHYYSFIKQRRGEDGNKWYKFNDGDVT 394 (944)
T ss_pred hhhcCCceeehhhhhhccccCCcCcccccccCcceeEEEEEEEecc---cccCcchhhhhhhhccCCCCceEeccCcccc
Confidence 99999999752 123456899999999999 68999999999975 4699999999999
Q ss_pred eecccccCC--------------------CCcEEEEEEEeCCCCcccc
Q 001134 872 AVERERVLT--------------------EGAYMLLYARCSPRAPRLI 899 (1145)
Q Consensus 872 ~Vs~eeVls--------------------~~AYILFYeR~s~~~~~~~ 899 (1145)
+.+.+++-. -+||||||+|++..+...+
T Consensus 395 e~~~n~me~~cfGGey~q~~~~~~~rrR~WNAYmlFYer~~d~p~~~~ 442 (944)
T KOG1866|consen 395 ECKMNEMENECFGGEYMQMMKRMSYRRRWWNAYMLFYERMDDIPTDDE 442 (944)
T ss_pred ccchhhHHHHhhcchhhhcccccchHHHhhhhHHHHHHHhcCCCcccc
Confidence 998776521 2699999999986654443
No 19
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-42 Score=384.72 Aligned_cols=371 Identities=22% Similarity=0.364 Sum_probs=293.1
Q ss_pred CCCCccccccccCCCcCCccceeeecccCCCCCCCccchhhhhhcc-ccCC--cccccccccCccccCccc-CCcCcchh
Q 001134 495 MPSVPSVRSERFDNVQRSSAMSAQIENSPSNVGNGLKTSLWKAVDQ-FRGS--KSSKQCLSVGCETAGRYS-DKGLFSYE 570 (1145)
Q Consensus 495 ~h~~~~~~s~~~d~~~~s~af~~ql~e~~~~g~~dLk~~~lk~~d~-v~dp--~LskhL~~~Gi~I~~~~k-eksLf~~E 570 (1145)
+|.++|.|.-- +...+.++|..+. .+-.++|=|. ++++ -.++ ++..++..|||+|+...+ +|+|....
T Consensus 205 GngHAlsHY~~-----t~Hplavkl~Sls-~~~~diyCY~--CD~e~R~~~n~n~~s~~~~fGinIa~~~~~Eksl~~lq 276 (749)
T COG5207 205 GNGHALSHYEE-----TQHPLAVKLPSLS-KEDCDIYCYL--CDSEIRSRYNSNENSVTIDFGINIADGKTEEKSLRKLQ 276 (749)
T ss_pred CCcchhhhhhc-----cCCceEEEccccc-cccccEEEEe--cCcccccCCcccccceeeeeccchhhccchHHHHHHHH
Confidence 45555555442 2245778888887 7888888544 4455 3334 688888899999998877 88887653
Q ss_pred hhhhhcccC----------CcccC---ccccccCCCccchHHHHHHHhCChhHHHHHhhc--ccccccccccchHHHHHH
Q 001134 571 LFVKLYNWN----------KVELQ---PCGLINCGNSCYANVVLQCLAFTPPLTAYFLQG--LHSKECAKKDWCFTCELE 635 (1145)
Q Consensus 571 ~~lkl~~~~----------k~el~---p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~--~~~~~~~~~~~cll~qL~ 635 (1145)
... ..+|+ +.+.+ ++||.|+||+||+|||||.|+....+...+... .....+..+..||.|||.
T Consensus 277 ~eq-n~nw~F~~~~~~~~sk~~~~ps~~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl~ 355 (749)
T COG5207 277 SEQ-NANWEFLEKKRAPESKGESVPSPYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLM 355 (749)
T ss_pred Hhh-hcCcchhccccCchhhcccCCCCccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHHH
Confidence 211 11111 11222 589999999999999999999988887665433 333344578899999999
Q ss_pred HHHHHHhcCC-----CCCCHHHHHHHHHhhccccCCCccccHHHHHHHHHHhhhhhhhhhhcCCCCCCCCcccccccccc
Q 001134 636 NLILRAKDGK-----SPLSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTF 710 (1145)
Q Consensus 636 kLf~~l~s~k-----~~isP~~fl~~L~~i~~~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~~~~e~siI~~lF 710 (1145)
+|+..|.... ..+.|..|...++.-++.|+..+||||+|||.+||+.|.+-. ..-..+.|.++|
T Consensus 356 kll~~mk~~p~~~y~ngi~p~~fk~~igq~h~eFg~~~QQDA~EFLlfLL~kirk~~-----------~S~~~~~It~lf 424 (749)
T COG5207 356 KLLSKMKETPDNEYVNGISPLDFKMLIGQDHPEFGKFAQQDAHEFLLFLLEKIRKGE-----------RSYLIPPITSLF 424 (749)
T ss_pred HHHhhccCCCCccccCCcChhhHHHHHcCCchhhhhhhhhhHHHHHHHHHHHHhhcc-----------chhcCCCcchhh
Confidence 9999887653 688999999999999999999999999999999999997521 112345688999
Q ss_pred ceEEeEEEEEcCCCCeeeeeeeeeeeeeeeec--ccccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCc
Q 001134 711 GGYLRSKIKCTKCHGKSERQERMMDLTVEIEG--DIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPN 788 (1145)
Q Consensus 711 ~G~l~s~ikC~~C~~~S~~~E~f~~LsL~Ip~--~~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~ 788 (1145)
.+.++.++.|..|+.+++.+++...+.+++.+ +.+++.++|+.|+.+++++ |.|++|+.+.+|.++..|+.||+
T Consensus 425 ~Fe~e~rlsC~~C~~v~ySye~~~~i~i~le~n~E~~di~~~v~a~f~pdtiE----~~CenCk~K~~a~~k~~~kslPk 500 (749)
T COG5207 425 EFEVERRLSCSGCMDVSYSYESMLMICIFLEGNDEPQDIRKSVEAFFLPDTIE----WSCENCKGKKKASRKPFIKSLPK 500 (749)
T ss_pred hhhhcceecccccccccccccceEEEEeecccCcchhhHHHHHHheECcccee----eehhhhcCcccccccchhhccCc
Confidence 99999999999999999999999998888765 4679999999999999998 99999999999999999999999
Q ss_pred eEEEeeeecccccc--ccccceEecC--cccCCCCccCC-----------------------------------------
Q 001134 789 ILTIALKRFQSGKF--GKLNKSIQFP--EILDLAPYMSG----------------------------------------- 823 (1145)
Q Consensus 789 VLiI~LkRF~~~~~--~KI~~~V~FP--e~LDLs~y~~~----------------------------------------- 823 (1145)
||||+..||..+.+ .|+..++.+. ..+++..|+..
T Consensus 501 ~LIlq~~R~~lqny~v~kls~pi~~~~D~m~~~~s~msk~~PqtEn~LPdedE~~t~Nqs~I~qL~~mGfp~~~~~rAL~ 580 (749)
T COG5207 501 YLILQVGRYSLQNYKVEKLSDPIEMRSDDMIKLGSFMSKFDPQTENLLPDEDEAFTDNQSLIRQLVDMGFPEEDAARALG 580 (749)
T ss_pred eeEEecceeeccceeehhccCceEEccccccchhhHhhccCCcccccCCccccccCchHHHHHHHHHcCCCHHHHHHHHh
Confidence 99999999986654 6777777665 35666655421
Q ss_pred ---C---------------------------------------------------------------------------C
Q 001134 824 ---T---------------------------------------------------------------------------S 825 (1145)
Q Consensus 824 ---~---------------------------------------------------------------------------s 825 (1145)
+ .
T Consensus 581 ~tgNqDaEsAMNWLFqHMdDPdlndP~~~~~~vPKkDkeVdE~~~~Slle~Gln~n~~Rkal~~~n~d~~r~V~w~~N~~ 660 (749)
T COG5207 581 ITGNQDAESAMNWLFQHMDDPDLNDPFVPPPNVPKKDKEVDESKARSLLENGLNPNLCRKALMDMNTDSKRRVVWCINDD 660 (749)
T ss_pred hccCcchHHHHHHHHhhccCcccCCCCCCCCCCCcccccccHHHHHHHHHcCCCHHHHHHHHHHccCCchheEEEEEeCC
Confidence 0 0
Q ss_pred C----------------------CCCceEEEEEEEEeecCCCCCCceEEEEEEcC---CCcEEEEcCCcceeecccccCC
Q 001134 826 D----------------------KLPIYRLYGVVVHLDIMNAAFSGHYVCYVKST---QNKWFKVDDSTVTAVERERVLT 880 (1145)
Q Consensus 826 ~----------------------~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~---~gkWy~fNDs~Vt~Vs~eeVls 880 (1145)
+ ....|.|.|||+|.|. ++++||||+|||+. .-+|++|||+++-.++.-++++
T Consensus 661 D~tF~EP~v~~eeqqqk~~~~~STa~PYaLtAvI~HkG~--s~haGHYv~fIrk~~~~K~kWvl~nDek~v~~~svE~~k 738 (749)
T COG5207 661 DGTFPEPEVPNEEQQQKKDLGYSTAKPYALTAVICHKGD--SIHAGHYVWFIRKNGKDKWKWVLKNDEKTVLNSSVEVLK 738 (749)
T ss_pred CCCCCCCCCCchhhhhcccccccccCcccceeEEeccCC--cccccceEEEEecccCcceeEEEEccchheehhhHHHHh
Confidence 0 0023999999999995 89999999999985 2279999999999988888899
Q ss_pred CCcEEEEEEEe
Q 001134 881 EGAYMLLYARC 891 (1145)
Q Consensus 881 ~~AYILFYeR~ 891 (1145)
.++||+||+|+
T Consensus 739 ~nGYiylf~R~ 749 (749)
T COG5207 739 DNGYIYLFKRC 749 (749)
T ss_pred hCCeEEEEecC
Confidence 99999999985
No 20
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=5.8e-41 Score=361.11 Aligned_cols=248 Identities=40% Similarity=0.664 Sum_probs=200.2
Q ss_pred ccccccCCCccchHHHHHHHhCChhHHHHHhhcc-----cccccccccchHHHHHHHHHHHHhcC---CCCCCHHHHHHH
Q 001134 585 PCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGL-----HSKECAKKDWCFTCELENLILRAKDG---KSPLSPIGILSR 656 (1145)
Q Consensus 585 p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~-----~~~~~~~~~~cll~qL~kLf~~l~s~---k~~isP~~fl~~ 656 (1145)
|+||.|.||||||||+||+|+++|+|+++|+... ..........+++++|+.|+..++.. ...+.|..|+.+
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 6899999999999999999999999999998641 11122234567999999999999976 578899999999
Q ss_pred HHhhccccCCCccccHHHHHHHHHHhhhhhhhhhhcC-CCCCCCCccccccccccceEEeEEEEEcCCCCeeeeeeeeee
Q 001134 657 LQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGV-NASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMD 735 (1145)
Q Consensus 657 L~~i~~~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~-~~~~~~~~e~siI~~lF~G~l~s~ikC~~C~~~S~~~E~f~~ 735 (1145)
+....+.|..+.||||+|||..||+.|+.+....... ..........+++.++|++++...++|..|+..
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~c~~c~~~--------- 151 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKRKSWKNTNSSEDSLISDLFGGQFESSIKCSSCKNS--------- 151 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSHHHHHHHHCCEESHHHHHH-EEEEEEEEETTTTCE---------
T ss_pred ccccccccccccccchhhhhcccccccchhhcccccccccccccccccccccccccccccccccccccccc---------
Confidence 9999999999999999999999999999865432110 000011245678899999999999999999877
Q ss_pred eeeeeecccccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeecccc----ccccccceEec
Q 001134 736 LTVEIEGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSG----KFGKLNKSIQF 811 (1145)
Q Consensus 736 LsL~Ip~~~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~----~~~KI~~~V~F 811 (1145)
+..|.++|+||+|+|+||.+. ...|+...|.|
T Consensus 152 --------------------------------------------~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~ 187 (269)
T PF00443_consen 152 --------------------------------------------QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEF 187 (269)
T ss_dssp --------------------------------------------EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB-
T ss_pred --------------------------------------------ccccccccceeeeccccceecccccccccccccccc
Confidence 568999999999999999432 35899999999
Q ss_pred C-cccCCCCccCCCCC---CCCceEEEEEEEEeecCCCCCCceEEEEEEcCC-CcEEEEcCCcceeecccccCC---CCc
Q 001134 812 P-EILDLAPYMSGTSD---KLPIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQ-NKWFKVDDSTVTAVERERVLT---EGA 883 (1145)
Q Consensus 812 P-e~LDLs~y~~~~s~---~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~~-gkWy~fNDs~Vt~Vs~eeVls---~~A 883 (1145)
| +.|||.+++..+.. ....|+|+|||+|.| ...+|||+||||+.+ ++||+|||++|++++.++|.. .+|
T Consensus 188 ~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G---~~~~GHY~a~v~~~~~~~W~~~dD~~v~~~~~~~v~~~~~~~~ 264 (269)
T PF00443_consen 188 PLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYG---SADSGHYVAYVRDSDDGKWYKFDDSRVTEVSWEEVIKSSNSTA 264 (269)
T ss_dssp -SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEES---STTSEEEEEEEEETTTTEEEEEETTEEEEESHHHHCCGGSTCE
T ss_pred Cchhhhhhhhhccccccccccceeeehhhhcccc---ccccceEEEeeccccCCeEEEeeCCceEECCHHHHhhccCCce
Confidence 9 79999999876543 357999999999999 578999999999864 469999999999999999988 899
Q ss_pred EEEEE
Q 001134 884 YMLLY 888 (1145)
Q Consensus 884 YILFY 888 (1145)
|||||
T Consensus 265 yll~Y 269 (269)
T PF00443_consen 265 YLLFY 269 (269)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 99999
No 21
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-42 Score=411.93 Aligned_cols=311 Identities=33% Similarity=0.513 Sum_probs=258.2
Q ss_pred CcccCccccccCCCccchHHHHHHHhCChhHHHHHhhccccccc----ccccchHHHHHHHHHHHHhcC--CCCCCHHHH
Q 001134 580 KVELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKEC----AKKDWCFTCELENLILRAKDG--KSPLSPIGI 653 (1145)
Q Consensus 580 k~el~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~----~~~~~cll~qL~kLf~~l~s~--k~~isP~~f 653 (1145)
....+.+||.|+||+||||++||||+.++.|+..++...+.... ......+..++.+++..++.. ...+.|..|
T Consensus 296 ~~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~P~~f 375 (653)
T KOG1868|consen 296 TDVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQFSVLPRRF 375 (653)
T ss_pred ccccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCceecCcHHH
Confidence 34567899999999999999999999999999777654322211 123345666667777666544 467889999
Q ss_pred HHHHHhhccccCCCccccHHHHHHHHHHhhhhhhhhhhcC---CC------------C----------CCCCcccccccc
Q 001134 654 LSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGV---NA------------S----------GPLEDETTLIGL 708 (1145)
Q Consensus 654 l~~L~~i~~~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~---~~------------~----------~~~~~e~siI~~ 708 (1145)
+..+.++.+.|.++.|||||||+.++++.||+++...... .. . ..+......|.+
T Consensus 376 ~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~~ 455 (653)
T KOG1868|consen 376 IRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIGD 455 (653)
T ss_pred HHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHHH
Confidence 9999999999999999999999999999999988654320 00 0 001123445899
Q ss_pred ccceEEeEEEEEcCCCCeeeeeeeeeeeeeeeeccc-----ccHHHHHHHhccccccCCCCccccCCCCCcceEE--EEE
Q 001134 709 TFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEGDI-----GNLEEALRRYTGTEILDGENKYKCDRCKSYEKAK--KKL 781 (1145)
Q Consensus 709 lF~G~l~s~ikC~~C~~~S~~~E~f~~LsL~Ip~~~-----~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~--K~~ 781 (1145)
+|.|++++.++|..|+..+.++++|++|+|+|+... .+|++|+..|++.|.++++++|.|++|+.+.... |+.
T Consensus 456 lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~~~~~~lK~~ 535 (653)
T KOG1868|consen 456 LFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCLSLFTKEEKLEGDEAWLCPRCKHKESSKTLKKL 535 (653)
T ss_pred HHHHHHHhheehhhcCCcceeeecceeeEEecccccccccccchHhhhccccchhhcccccccCCccccCccccccccee
Confidence 999999999999999999999999999999998532 4599999999999999999999999999999996 999
Q ss_pred EEeeCCceEEEeeeecccc--ccccccceEecCc-ccCCCCccCCCCCCCCceEEEEEEEEeecCCCCCCceEEEEEEcC
Q 001134 782 TIVEAPNILTIALKRFQSG--KFGKLNKSIQFPE-ILDLAPYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKST 858 (1145)
Q Consensus 782 ~I~~lP~VLiI~LkRF~~~--~~~KI~~~V~FPe-~LDLs~y~~~~s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~ 858 (1145)
.|.+||++|+|||+||... ...|....|+||. .+++.++.....+....|+|+|||+|.| +..+|||+|||+..
T Consensus 536 ~i~~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G---tl~sGHYta~~~~~ 612 (653)
T KOG1868|consen 536 TILRLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFAEKGNNPKSYRLYAVVNHSG---TLNSGHYTAYVYKN 612 (653)
T ss_pred eeecCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhccccCCCccceeeEEEEeccC---cccCCceEEEEeec
Confidence 9999999999999999875 4589999999995 5667666666666667899999999999 57799999999875
Q ss_pred -CCcEEEEcCCcceeecccccCCCCcEEEEEEEeCC
Q 001134 859 -QNKWFKVDDSTVTAVERERVLTEGAYMLLYARCSP 893 (1145)
Q Consensus 859 -~gkWy~fNDs~Vt~Vs~eeVls~~AYILFYeR~s~ 893 (1145)
.+.||.|||+.|+.+....|....||||||+|..+
T Consensus 613 ~~~~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~~~~ 648 (653)
T KOG1868|consen 613 EKQRWFTFDDSEVSPISETDVGSSSAYILFYERLGI 648 (653)
T ss_pred CCCceEEecCeeeeccccccccCCCceEEEeecCCc
Confidence 57899999999999998888889999999999875
No 22
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.2e-41 Score=365.55 Aligned_cols=238 Identities=23% Similarity=0.387 Sum_probs=189.3
Q ss_pred cccCCCccchHHHHHHHhCChhHHHHHhhcccccccccccchHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhccccCCC
Q 001134 588 LINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSIGSQLGNG 667 (1145)
Q Consensus 588 L~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~~~~~cll~qL~kLf~~l~s~k~~isP~~fl~~L~~i~~~F~~g 667 (1145)
|+|.||+||+|+.+|+|.. ++++++.|.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~--------------------------------------------------i~~~~~~F~~~ 31 (245)
T cd02673 2 LVNTGNSCYFNSTMQALSS--------------------------------------------------IGKINTEFDND 31 (245)
T ss_pred ceecCCeeeehhHHHHHHH--------------------------------------------------HhhhhhhcCCC
Confidence 7899999999999999842 23456789999
Q ss_pred ccccHHHHHHHHHHhhhhhhhhhhcCCCCCCCCccccccccccceEEeEEEEEcCCCCeeeeeeeeeeeeeeeecc-ccc
Q 001134 668 REEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEGD-IGN 746 (1145)
Q Consensus 668 ~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~~~~e~siI~~lF~G~l~s~ikC~~C~~~S~~~E~f~~LsL~Ip~~-~~S 746 (1145)
+||||||||++||+.|++++..................+.++|+|+++++++|..|+.++.+.++|++|+|+++.. ...
T Consensus 32 ~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~l~s~i~C~~C~~~s~~~e~~~~L~L~i~~~~~~~ 111 (245)
T cd02673 32 DQQDAHEFLLTLLEAIDDIMQVNRTNVPPSNIEIKRLNPLEAFKYTIESSYVCIGCSFEENVSDVGNFLDVSMIDNKLDI 111 (245)
T ss_pred chhhHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCHhHheeeEEEeEEEecCCCCeeeeccccceeccccccCCcch
Confidence 9999999999999999987644321110000011112345789999999999999999999999999999999864 457
Q ss_pred HHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeeccccccccccceEecCcccCCCCccCCCCC
Q 001134 747 LEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSGKFGKLNKSIQFPEILDLAPYMSGTSD 826 (1145)
Q Consensus 747 Led~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~~~~KI~~~V~FPe~LDLs~y~~~~s~ 826 (1145)
|++++..|...+.++ |.|++|+.. .+.|+.+|.++|+||+|||+||.+.. ++...+.+ ..++|.+|..
T Consensus 112 le~l~~~~~~~~~~e----~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~--~~~~~~~~-~~~~~~~~~~---- 179 (245)
T cd02673 112 DELLISNFKTWSPIE----KDCSSCKCE-SAISSERIMTFPECLSINLKRYKLRI--ATSDYLKK-NEEIMKKYCG---- 179 (245)
T ss_pred HHHHHHHhhcccccC----ccCCCCCCc-cceeechhhhCChhhEEeeEeeeecc--cccccccc-cccccccccC----
Confidence 888888888777765 899999975 78888999999999999999996532 22222222 2356677664
Q ss_pred CCCceEEEEEEEEeecCCCCCCceEEEEEEcC--CCcEEEEcCCcceeecccccC---CCCcEEEEEE
Q 001134 827 KLPIYRLYGVVVHLDIMNAAFSGHYVCYVKST--QNKWFKVDDSTVTAVERERVL---TEGAYMLLYA 889 (1145)
Q Consensus 827 ~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~--~gkWy~fNDs~Vt~Vs~eeVl---s~~AYILFYe 889 (1145)
....|+|+|||+|.|. +..+|||+||+|.. .++||+|||+.|+++++++|+ ...||||||+
T Consensus 180 ~~~~Y~L~~VV~H~G~--~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~~~~~aYiLFY~ 245 (245)
T cd02673 180 TDAKYSLVAVICHLGE--SPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTNARSSGYLIFYD 245 (245)
T ss_pred CCceEEEEEEEEECCC--CCCCceEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhhccCCceEEEEEC
Confidence 3367999999999994 57899999999985 479999999999999999998 5799999996
No 23
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.8e-40 Score=378.89 Aligned_cols=270 Identities=25% Similarity=0.345 Sum_probs=213.0
Q ss_pred ccccccCCCccchHHHHHHHhCChhHHHHHhhcccccc----------------cc----cccchHHHHHHHHHHHHhcC
Q 001134 585 PCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKE----------------CA----KKDWCFTCELENLILRAKDG 644 (1145)
Q Consensus 585 p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~----------------~~----~~~~cll~qL~kLf~~l~s~ 644 (1145)
|+||.|+||||||||+||+|+++|+||++++....... .. ....+|+++|+.||..|+..
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 78999999999999999999999999999987542111 00 12236999999999999866
Q ss_pred C-CCCCHHHHHHHHHhhccccCCCccccHHHHHHHHHHhhhhhhhhhhcCCC---CCCCCccccccccccceEEeEEEEE
Q 001134 645 K-SPLSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNA---SGPLEDETTLIGLTFGGYLRSKIKC 720 (1145)
Q Consensus 645 k-~~isP~~fl~~L~~i~~~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~---~~~~~~e~siI~~lF~G~l~s~ikC 720 (1145)
. ..+.|..++..+.. .||||+||+..||++|+..+........ ........++|.++|.|++.+.++|
T Consensus 81 ~~~~v~P~~~l~~l~~--------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~~~~~~~I~~lF~G~~~~~i~c 152 (343)
T cd02666 81 NTRSVTPSKELAYLAL--------RQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDDKEQSDLIKRLFSGKTKQQLVP 152 (343)
T ss_pred CCCccCcHHHHHhccc--------cccchHHHHHHHHHHHHHHhcCccccccCcccccccchhhhhhHhceeeEEEEEEe
Confidence 4 78999999876642 8999999999999999987653321100 0111245679999999999999999
Q ss_pred cCCC---Ceeeeeeeeeeeeeeeec---------ccccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCc
Q 001134 721 TKCH---GKSERQERMMDLTVEIEG---------DIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPN 788 (1145)
Q Consensus 721 ~~C~---~~S~~~E~f~~LsL~Ip~---------~~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~ 788 (1145)
..|+ ..+.+.|+|++|+|+|.. ...+|.++|+.|+..|. |.++|+
T Consensus 153 ~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~-----------------------~~~~P~ 209 (343)
T cd02666 153 ESMGNQPSVRTKTERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS-----------------------LTKLPQ 209 (343)
T ss_pred cccCCCCCCccccceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh-----------------------hccCCH
Confidence 9997 778999999999999986 67899999999997765 889999
Q ss_pred eEEEeeeeccccc--cccccceEecCcccCCCCccCC----------------------------CCCCCCceEEEEEEE
Q 001134 789 ILTIALKRFQSGK--FGKLNKSIQFPEILDLAPYMSG----------------------------TSDKLPIYRLYGVVV 838 (1145)
Q Consensus 789 VLiI~LkRF~~~~--~~KI~~~V~FPe~LDLs~y~~~----------------------------~s~~s~~YeL~gVIv 838 (1145)
+|.|||+ +.+.. ..+..++.+||...++.++... ...+...|+|+|||+
T Consensus 210 vl~~qlq-~~~~~~~~~~~~dry~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Y~L~avv~ 288 (343)
T cd02666 210 RSQVQAQ-LAQPLQRELISMDRYELPSSIDDIDELIREAIQSESSLVRQAQNELAELKHEIEKQFDDLKSYGYRLHAVFI 288 (343)
T ss_pred HHHHHHh-hcccccchheeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceEEEEEEE
Confidence 9999999 32211 2456666666665555444321 012456899999999
Q ss_pred EeecCCCCCCceEEEEEEcC-CCcEEEEcCCcceeecccccCC------CCcEEEEEE
Q 001134 839 HLDIMNAAFSGHYVCYVKST-QNKWFKVDDSTVTAVERERVLT------EGAYMLLYA 889 (1145)
Q Consensus 839 H~Gt~nsa~sGHYVAyVR~~-~gkWy~fNDs~Vt~Vs~eeVls------~~AYILFYe 889 (1145)
|.| .+.+|||++|+|+. ++.||+|||..|+++..++|+. .+||||+|.
T Consensus 289 H~G---~~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~~ev~~~~~~~~~~pY~l~Yv 343 (343)
T cd02666 289 HRG---EASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGNTATPYFLVYV 343 (343)
T ss_pred eec---CCCCCeEEEEEEECCCCeEEEEECCeeEEecHHHHhhcccCCCCCCEEEEeC
Confidence 999 46899999999985 4799999999999999988874 489999994
No 24
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-41 Score=393.55 Aligned_cols=310 Identities=30% Similarity=0.496 Sum_probs=258.2
Q ss_pred CCcCcchhhhhhhcccCCcccCccccccCCCccchHHHHHHHhCChhHHHHHhhcccccccccccchHHHHHHHHHHHHh
Q 001134 563 DKGLFSYELFVKLYNWNKVELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAK 642 (1145)
Q Consensus 563 eksLf~~E~~lkl~~~~k~el~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~~~~~cll~qL~kLf~~l~ 642 (1145)
..+-.-|..++. |++ +.++|++||+|.|.||||||+||+||.+..||+.+....... ........-+||++|..|+
T Consensus 173 dPTGVLWHsF~n-YnS-KkeTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~--p~grdSValaLQr~Fynlq 248 (1089)
T COG5077 173 DPTGVLWHSFLN-YNS-KKETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDH--PRGRDSVALALQRLFYNLQ 248 (1089)
T ss_pred CCccceeecccc-ccc-ccceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCC--CCccchHHHHHHHHHHHHh
Confidence 334444555554 444 448999999999999999999999999999999887654221 1233346789999999999
Q ss_pred cCCCCCCHHHHHHHHHhhccccCCCccccHHHHHHHHHHhhhhhhhhhhcCCCCCCCCccccccccccceEEeEEEEEcC
Q 001134 643 DGKSPLSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTK 722 (1145)
Q Consensus 643 s~k~~isP~~fl~~L~~i~~~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~~~~e~siI~~lF~G~l~s~ikC~~ 722 (1145)
.+..+++..+|....+ +..+....|+|.|||-+.|.|.|++..... .-...+..+|-|++.+.++|.+
T Consensus 249 ~~~~PvdTteltrsfg--Wds~dsf~QHDiqEfnrVl~DnLEksmrgt----------~VEnaln~ifVgkmksyikCvn 316 (1089)
T COG5077 249 TGEEPVDTTELTRSFG--WDSDDSFMQHDIQEFNRVLQDNLEKSMRGT----------VVENALNGIFVGKMKSYIKCVN 316 (1089)
T ss_pred ccCCCcchHHhhhhcC--cccchHHHHHhHHHHHHHHHHHHHHhhcCC----------hhhhHHhHHHHHHhhceeeEEE
Confidence 9999999988865542 344555689999999999999998733211 1112478899999999999999
Q ss_pred CCCeeeeeeeeeeeeeeeecccccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeeccc---
Q 001134 723 CHGKSERQERMMDLTVEIEGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQS--- 799 (1145)
Q Consensus 723 C~~~S~~~E~f~~LsL~Ip~~~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~--- 799 (1145)
-..++.+.|.||++.|++.+ ..+|+|.++.|.+.|+++|+|+|.|++-+ .+.|.|-..|..||+||.|+||||.+
T Consensus 317 vnyEsarvedfwdiqlNvK~-~knLqeSfr~yIqvE~l~GdN~Y~ae~~G-lqdAkKGViFeSlPpVlhlqLKRFeyDfe 394 (1089)
T COG5077 317 VNYESARVEDFWDIQLNVKG-MKNLQESFRRYIQVETLDGDNRYNAEKHG-LQDAKKGVIFESLPPVLHLQLKRFEYDFE 394 (1089)
T ss_pred echhhhhHHHHHHHHhcccc-hhhHHHHHHHhhhheeccCCccccccccc-chhhccceeeccCchHHHHHHHHhccccc
Confidence 99999999999999999986 58999999999999999999999999865 68999999999999999999999975
Q ss_pred -cccccccceEecCcccCCCCccCCCCC----CCCceEEEEEEEEeecCCCCCCceEEEEEEcC-CCcEEEEcCCcceee
Q 001134 800 -GKFGKLNKSIQFPEILDLAPYMSGTSD----KLPIYRLYGVVVHLDIMNAAFSGHYVCYVKST-QNKWFKVDDSTVTAV 873 (1145)
Q Consensus 800 -~~~~KI~~~V~FPe~LDLs~y~~~~s~----~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~-~gkWy~fNDs~Vt~V 873 (1145)
+...||++..+||+++||.||+..+.+ ....|.|+||+||.| ..+.|||||++|.. +|+||+|||++|+.+
T Consensus 395 ~d~mvKINDryEFP~eiDl~pfld~da~ksen~d~vY~LygVlVHsG---Dl~~GHyYallKpe~dg~WykfdDtrVtra 471 (1089)
T COG5077 395 RDMMVKINDRYEFPLEIDLLPFLDRDADKSENSDAVYVLYGVLVHSG---DLHEGHYYALLKPEKDGRWYKFDDTRVTRA 471 (1089)
T ss_pred cCceeeecccccCcchhccccccCchhhhhcccCcEEEEEEEEEecc---ccCCceEEEEeccccCCCceeecceehhhH
Confidence 345899999999999999999986433 236899999999999 68899999999953 899999999999999
Q ss_pred cccccCCC----------------------CcEEEEEEEeCC
Q 001134 874 ERERVLTE----------------------GAYMLLYARCSP 893 (1145)
Q Consensus 874 s~eeVls~----------------------~AYILFYeR~s~ 893 (1145)
...+|+.+ .||||+|-|++.
T Consensus 472 t~kevleeNfGgd~~~~~k~r~~~~~kRfmsAYmLvYlRks~ 513 (1089)
T COG5077 472 TEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLRKSM 513 (1089)
T ss_pred HHHHHHHHhcCCCCCCcccccCCchhhhhhhhheeeeehHhH
Confidence 98888631 489999999863
No 25
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.7e-39 Score=338.30 Aligned_cols=235 Identities=39% Similarity=0.639 Sum_probs=202.7
Q ss_pred ccccCCCccchHHHHHHHhCChhHHHHHhhcccccccccccchHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhccccCC
Q 001134 587 GLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSIGSQLGN 666 (1145)
Q Consensus 587 GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~~~~~cll~qL~kLf~~l~s~k~~isP~~fl~~L~~i~~~F~~ 666 (1145)
||.|.||+||+||+||+|++
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~------------------------------------------------------------ 20 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20 (255)
T ss_pred CccccCcchHHhHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999987
Q ss_pred CccccHHHHHHHHHHhhhhhhhhhhcCCCCCCCCccccccccccceEEeEEEEEcCCCCeeeeeeeeeeeeeeeecc---
Q 001134 667 GREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEGD--- 743 (1145)
Q Consensus 667 g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~~~~e~siI~~lF~G~l~s~ikC~~C~~~S~~~E~f~~LsL~Ip~~--- 743 (1145)
.||||+|||..||+.|+.++...... ........+.+.++|++.+...+.|..|+..+.....+..+.|+++..
T Consensus 21 -~q~Da~E~l~~ll~~l~~~~~~~~~~--~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l~l~~~~~~~~ 97 (255)
T cd02257 21 -EQQDAHEFLLFLLDKLHEELKKSSKR--TSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPLPVKGLP 97 (255)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhhccc--ccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeEEeeccCCCCC
Confidence 79999999999999999877543221 111223456899999999999999999998888878888888888765
Q ss_pred cccHHHHHHHhccccccCCCCccccCCCC--CcceEEEEEEEeeCCceEEEeeeecccc---ccccccceEecCcccCCC
Q 001134 744 IGNLEEALRRYTGTEILDGENKYKCDRCK--SYEKAKKKLTIVEAPNILTIALKRFQSG---KFGKLNKSIQFPEILDLA 818 (1145)
Q Consensus 744 ~~SLed~L~~f~~~E~Ldgdn~y~C~kCk--~~~~A~K~~~I~~lP~VLiI~LkRF~~~---~~~KI~~~V~FPe~LDLs 818 (1145)
..+|+++|+.++..+.+++ +.|..|+ ..+.+.++..|.++|+||+|+|+||... ...|+...|.||+.|++.
T Consensus 98 ~~~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~~~~v~~~~~l~~~ 174 (255)
T cd02257 98 QVSLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFPLELDLS 174 (255)
T ss_pred CCcHHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeeceeeccccccccCCCeEeCCCcccCc
Confidence 5899999999999999987 7888898 6888899999999999999999999864 468999999999999998
Q ss_pred CccCC------CCCCCCceEEEEEEEEeecCCCCCCceEEEEEEcCC-CcEEEEcCCcceeeccccc-----CCCCcEEE
Q 001134 819 PYMSG------TSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQ-NKWFKVDDSTVTAVERERV-----LTEGAYML 886 (1145)
Q Consensus 819 ~y~~~------~s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~~-gkWy~fNDs~Vt~Vs~eeV-----ls~~AYIL 886 (1145)
.+... .......|+|+|||+|.|. ...+|||+||+|... ++||+|||..|++++.+++ ....||||
T Consensus 175 ~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~--~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~~~~~~~~~~~~yll 252 (255)
T cd02257 175 PYLSEGEKDSDSDNGSYKYELVAVVVHSGT--SADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSLSSSAYIL 252 (255)
T ss_pred cccccccccccccCCCccEEEEEEEEEecC--CCCCcCeEEEEeCCCCCceEEEeccccEEcCHHHhhhccCCCCceEEE
Confidence 87642 3344578999999999994 458999999999965 8999999999999999998 46789999
Q ss_pred EEE
Q 001134 887 LYA 889 (1145)
Q Consensus 887 FYe 889 (1145)
||+
T Consensus 253 ~Y~ 255 (255)
T cd02257 253 FYE 255 (255)
T ss_pred EEC
Confidence 996
No 26
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.8e-39 Score=349.36 Aligned_cols=217 Identities=27% Similarity=0.378 Sum_probs=181.9
Q ss_pred ccccCCCccchHHHHHHHhCChhHHHHHhhcccccccccccchHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhccccCC
Q 001134 587 GLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSIGSQLGN 666 (1145)
Q Consensus 587 GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~~~~~cll~qL~kLf~~l~s~k~~isP~~fl~~L~~i~~~F~~ 666 (1145)
||.|.|||||+|+|.|+|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 20 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFS------------------------------------------------------------ 20 (228)
T ss_pred CccccCcchhHHHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999975
Q ss_pred CccccHHHHHHHHHHhhhhhhhhhhcCCCCCCCCccccccccccceEEeEEEEEcCCCCeeeeeeeeeeeeeeeeccccc
Q 001134 667 GREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEGDIGN 746 (1145)
Q Consensus 667 g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~~~~e~siI~~lF~G~l~s~ikC~~C~~~S~~~E~f~~LsL~Ip~~~~S 746 (1145)
.||||+||++.||+.|+..+...... ........++|.++|+|++..++.| |+..+.+.|+|++|+|+|.+. .+
T Consensus 21 -~QQDa~Ef~~~Lld~Le~~l~~~~~~--~~~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~~E~F~~L~l~i~~~-~~ 94 (228)
T cd02665 21 -QQQDVSEFTHLLLDWLEDAFQAAAEA--ISPGEKSKNPMVQLFYGTFLTEGVL--EGKPFCNCETFGQYPLQVNGY-GN 94 (228)
T ss_pred -HHHHHHHHHHHHHHHHHHHhcccccc--ccccccccchHhhceEEEEEEEEEE--CCCcccccCccEEEEEEECCC-CC
Confidence 59999999999999999876432110 0112245668999999999987776 778899999999999999875 89
Q ss_pred HHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeecccc--ccccccceEecCcccCCCCccCCC
Q 001134 747 LEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSG--KFGKLNKSIQFPEILDLAPYMSGT 824 (1145)
Q Consensus 747 Led~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~--~~~KI~~~V~FPe~LDLs~y~~~~ 824 (1145)
|++||+.|+.++.+++++.++ ...+.++..|.++|+||+|||+||.+. ...|+++.|+||..|
T Consensus 95 L~e~L~~~~~ee~l~~~~~~~------~~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~Ki~~~v~FP~~l--------- 159 (228)
T cd02665 95 LHECLEAAMFEGEVELLPSDH------SVKSGQERWFTELPPVLTFELSRFEFNQGRPEKIHDKLEFPQII--------- 159 (228)
T ss_pred HHHHHHHhhhhcccccccccc------hhhhhhhhhhhhCChhhEEEeEeeEEcCCccEECCEEEEeeCcc---------
Confidence 999999999998988744322 234566778999999999999999874 468999999999887
Q ss_pred CCCCCceEEEEEEEEeecCCCCCCceEEEEEEcC-CCcEEEEcCCcceeecccccCC--------CCcEEEEEE
Q 001134 825 SDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKST-QNKWFKVDDSTVTAVERERVLT--------EGAYMLLYA 889 (1145)
Q Consensus 825 s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~-~gkWy~fNDs~Vt~Vs~eeVls--------~~AYILFYe 889 (1145)
....|+|+|||+|.| .+++|||+||+|+. +++||+|||+.|++++.++|+. ..||||||.
T Consensus 160 --~~~~Y~L~aVi~H~G---~~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~~~~fGg~~~~~AYiLfYv 228 (228)
T cd02665 160 --QQVPYELHAVLVHEG---QANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSAYCLMYI 228 (228)
T ss_pred --CCceeEEEEEEEecC---CCCCCEEEEEEEcCCCCEEEEEECCeeEEcCHHHHhhhccCCCCCCceEEEEEC
Confidence 125799999999999 47899999999864 7899999999999999998874 379999994
No 27
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-39 Score=381.00 Aligned_cols=307 Identities=36% Similarity=0.633 Sum_probs=267.2
Q ss_pred cccCccccccCCCccchHHHHHHHhCChhHHHHHhhcccccccccc-cchHHHHHHHHHHHHhcCC--CCCCHHHHHHHH
Q 001134 581 VELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKK-DWCFTCELENLILRAKDGK--SPLSPIGILSRL 657 (1145)
Q Consensus 581 ~el~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~~~-~~cll~qL~kLf~~l~s~k--~~isP~~fl~~L 657 (1145)
...+.+||+|+|+||+||++||.|.+.+..+...+...|.+..... ..|+.|++.+++..++... .++.|..++..+
T Consensus 157 ~~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~l~~~ 236 (492)
T KOG1867|consen 157 TALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGHNRTPYSPFELLNLV 236 (492)
T ss_pred eeecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCCCCCCcChHHHHHHH
Confidence 4567899999999999999999999999999988887777555444 7899999999999988764 789999999999
Q ss_pred HhhccccCCCccccHHHHHHHHHHhhhhhhhhhhcCC--CCCCCCccccccccccceEEeEEEEEcCCCCeeeeeeeeee
Q 001134 658 QSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVN--ASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMD 735 (1145)
Q Consensus 658 ~~i~~~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~--~~~~~~~e~siI~~lF~G~l~s~ikC~~C~~~S~~~E~f~~ 735 (1145)
+...+.+.+..||||+||+..+++.++.+. +..+.. .......-.+++...|.|.+...++|..|+..+..+++|++
T Consensus 237 ~k~~~~~~g~~Qqda~eF~~~~~~~~~~~~-~~~~k~~~~~~~~~~c~~iv~~~F~G~L~~~v~c~~c~~~S~~~dpf~d 315 (492)
T KOG1867|consen 237 WKHSPNLAGYEQQDAHEFLIALLDRLHREK-DDCGKSLIASQSNKQCPCIVHTIFSGTLQSDVTCQTCGSKSTTYDPFMD 315 (492)
T ss_pred HHhCcccccccccchHHHHHHhcccccccc-cccccccccccCCcccccccceeecceeccceeehhhcceeeeccCccc
Confidence 999999999999999999999999999866 111110 01111244689999999999999999999999999999999
Q ss_pred eeeeeeccc---------ccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeecccc---ccc
Q 001134 736 LTVEIEGDI---------GNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSG---KFG 803 (1145)
Q Consensus 736 LsL~Ip~~~---------~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~---~~~ 803 (1145)
|+|+|+... ..+.+|+..|...+......++.|..|+.++.+.|+..|..+|.+|.+|++||.+. ...
T Consensus 316 isL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~ 395 (492)
T KOG1867|consen 316 ISLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATGARE 395 (492)
T ss_pred eeeecchhccCcccccchhhhhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCceeeeeecccccccccccc
Confidence 999998532 56999999999999888888899999999999999999999999999999999853 234
Q ss_pred cccceEecCcccCCCCccCCC-----CCCCCceEEEEEEEEeecCCCCCCceEEEEEEcCCCcEEEEcCCcceeeccccc
Q 001134 804 KLNKSIQFPEILDLAPYMSGT-----SDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQNKWFKVDDSTVTAVERERV 878 (1145)
Q Consensus 804 KI~~~V~FPe~LDLs~y~~~~-----s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~~gkWy~fNDs~Vt~Vs~eeV 878 (1145)
|+.+.|.||..|+|.+|+..+ ......|+|.|||+|+| ..++|||+||.|+ .+.||+|||+.|+.+++++|
T Consensus 396 ki~~~v~fp~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H~G---~~~SGHY~aY~r~-~~~~~~~dDs~v~~~s~~eV 471 (492)
T KOG1867|consen 396 KIDSYVSFPVLLNMKPYCSSEKLKSQDNPDHLYELRAVVVHHG---TVGSGHYVAYRRQ-SGGWFKCDDSTVTKVSEEEV 471 (492)
T ss_pred ccCcccccchhhcCCccccccccccCCCCCceEEEEEEEEecc---CCCCCceEEEEEe-CCCcEEEcCeEEEEeeHHHh
Confidence 999999999999999998741 12347899999999999 4779999999998 88999999999999999999
Q ss_pred CCCCcEEEEEEEeC
Q 001134 879 LTEGAYMLLYARCS 892 (1145)
Q Consensus 879 ls~~AYILFYeR~s 892 (1145)
++..||+|||.+..
T Consensus 472 l~~~aylLFY~~~~ 485 (492)
T KOG1867|consen 472 LSSQAYLLFYTQEQ 485 (492)
T ss_pred hhchhhheehhHHh
Confidence 99999999998864
No 28
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-37 Score=362.34 Aligned_cols=305 Identities=34% Similarity=0.557 Sum_probs=240.8
Q ss_pred cCccccccCCCccchHHHHHHHhCChhHHHHHhhccccccc-----------------ccccchHHHHHHHHHHHHhcCC
Q 001134 583 LQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKEC-----------------AKKDWCFTCELENLILRAKDGK 645 (1145)
Q Consensus 583 l~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~-----------------~~~~~cll~qL~kLf~~l~s~k 645 (1145)
..-+||.|+|||||+|||+|.|..+|.|++.|......... ..+...++.+|..|..+....+
T Consensus 203 ~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~~~e~~e~~k 282 (877)
T KOG1873|consen 203 YIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALANLLEMSETTK 282 (877)
T ss_pred ccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHhhhhhhhccC
Confidence 34489999999999999999999999999998753322100 0233456666666666666678
Q ss_pred CCCCHHHHHHHHHhhccccCCCccccHHHHHHHHHHhhhhhhhhhhcC-----------------------CCCCCCCcc
Q 001134 646 SPLSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGV-----------------------NASGPLEDE 702 (1145)
Q Consensus 646 ~~isP~~fl~~L~~i~~~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~-----------------------~~~~~~~~e 702 (1145)
..+.|..|+..+....++|.++.||||||+|+.|||.|..+-.+.... ....+....
T Consensus 283 sv~~Pr~lF~~~C~k~pqF~g~~QhDsHELLR~LLD~l~~EE~~~~kk~Il~~fG~~t~~l~scle~~q~sKvYe~f~~~ 362 (877)
T KOG1873|consen 283 SVITPRTLFGQFCSKAPQFRGYDQHDSHELLRCLLDSLRSEESRRRKKNILSNFGGETSSLVSCLECGQKSKVYEPFKDL 362 (877)
T ss_pred CccCHHHHHHHHHHhCCcccccccccHHHHHHHHHHhhhHHHHHHHHHhHHHhhCccccchhhhhhccchhhcccccccC
Confidence 999999999999999999999999999999999999997543221110 011122233
Q ss_pred ccccccccceEEeEEEEEcCCCCeeeeeeeeeeeeeeee-----------------------------------------
Q 001134 703 TTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIE----------------------------------------- 741 (1145)
Q Consensus 703 ~siI~~lF~G~l~s~ikC~~C~~~S~~~E~f~~LsL~Ip----------------------------------------- 741 (1145)
..++..+|.|-+.+.+.|..|. ++...+.|.+.+++|-
T Consensus 363 ~~~vp~~~~~~~~s~~~~~~~~-vss~~~s~~~~t~pv~~~~~~~qs~~~s~~~~~tsd~sd~spst~~~t~n~~~~e~~ 441 (877)
T KOG1873|consen 363 SLPVPLSFNGPLTSQIECQACD-VSSVHESFLSETLPVLPSQSLSQSSDSSQHLHLTSDSSDTSPSTEAPTKNLPSSELL 441 (877)
T ss_pred CcccccccCCCcccchhhhccc-eeccchhhcccccccccCccccccCCCcccceeccccccCCccccCcccCccccccc
Confidence 4556688999999999999998 5555666666665540
Q ss_pred -------------------------------------------c------------------------------------
Q 001134 742 -------------------------------------------G------------------------------------ 742 (1145)
Q Consensus 742 -------------------------------------------~------------------------------------ 742 (1145)
+
T Consensus 442 ~~~t~dn~~~~k~qS~~~~~~S~~~~~~~k~~a~s~n~n~~~~g~~~~~a~~v~~~~~~~~p~gD~e~s~Ad~~lde~n~ 521 (877)
T KOG1873|consen 442 DSLTDDNDQVFKGQSDVAGTNSKEDQNKAKNQAKSQNLNEASQGKDNEKALQVNDRQLDILPLGDGELSKADMSLDEANM 521 (877)
T ss_pred ccccccCchhhccccccccCccccccchhhhhhhhhccccccccccchhhhhhchhhccccccCcccccccccccccccc
Confidence 0
Q ss_pred --------------------------------------------------------------------------------
Q 001134 743 -------------------------------------------------------------------------------- 742 (1145)
Q Consensus 743 -------------------------------------------------------------------------------- 742 (1145)
T Consensus 522 ~~~sss~~~~~~~~~~~s~v~~~s~~ed~n~~~~~~~~~~~a~~Ss~~~d~~~~~~~v~~S~~s~sp~~se~~~vs~n~~ 601 (877)
T KOG1873|consen 522 DEFSSSLEKGIFRGRSTSEVSQASCNEDCNDPEPIQDGSGEASSSSSSVDREHNNHRVARSRFSRSPKKSEVKIVSGNDK 601 (877)
T ss_pred cccccccCCcccCCccHHHhhhhhhhcccCCcccccCCCCcccCCCcccccccccchhhhhhhcCCCcccceeeeccccc
Confidence
Q ss_pred --------------------------------------------------------------------------ccccHH
Q 001134 743 --------------------------------------------------------------------------DIGNLE 748 (1145)
Q Consensus 743 --------------------------------------------------------------------------~~~SLe 748 (1145)
...+++
T Consensus 602 ~~g~~g~~~~Sssf~~g~~~g~~~d~d~~~~e~~~~~~T~~~~~~g~~s~~kvs~~~f~a~~S~s~~~~~~~~D~p~Svq 681 (877)
T KOG1873|consen 602 TVGDQGETENSSSFNEGDLNGHASDNDEFLIEIPDDKLTRELPVFGPPSKAKVSEQGFDAFSSISDPEVLDSSDEPCSVQ 681 (877)
T ss_pred cccccceeeechhhhccCccccccchHHhhhcCcccCCCccccccCCCccceeccCCccccccccChhhccCCCCCccHH
Confidence 014899
Q ss_pred HHHHHhccccccCCCCccccCCCCCc---------------------------ceEEEEEEEeeCCceEEEeeeeccc--
Q 001134 749 EALRRYTGTEILDGENKYKCDRCKSY---------------------------EKAKKKLTIVEAPNILTIALKRFQS-- 799 (1145)
Q Consensus 749 d~L~~f~~~E~Ldgdn~y~C~kCk~~---------------------------~~A~K~~~I~~lP~VLiI~LkRF~~-- 799 (1145)
.||.+|++.|.+.|+|++.|++|.+. ..|.|+..|..+|+||+|||+||..
T Consensus 682 ~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlKrf~q~~ 761 (877)
T KOG1873|consen 682 RCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLKRFFQDI 761 (877)
T ss_pred HHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHhhhhhhh
Confidence 99999999999999999999999651 1256788899999999999999974
Q ss_pred -cccccccceEecCcccCCCCccCCC-----CCCCCceEEEEEEEEeecCCCCCCceEEEEEEc----------------
Q 001134 800 -GKFGKLNKSIQFPEILDLAPYMSGT-----SDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKS---------------- 857 (1145)
Q Consensus 800 -~~~~KI~~~V~FPe~LDLs~y~~~~-----s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~---------------- 857 (1145)
++..|.++.|.|++.+||.+|+.-. ......|+|+|||.|.|+ ...||||+|+|.
T Consensus 762 ~~~~~k~~~h~~f~E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgt---m~~ghyvayv~~~t~~~~~~~~~~~~~~ 838 (877)
T KOG1873|consen 762 RGRLSKLNKHVDFKEFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGT---MSYGHYVAYVRGGTFLDLSAPSNSKDFE 838 (877)
T ss_pred hchhhcccccchHHHHHHHHHHhhhhccccCCcchhhhhhccceecccc---ccCCcchhhhhccchhhccCccccccch
Confidence 4568999999999999999998621 113358999999999995 558999999984
Q ss_pred -----CCCcEEEEcCCcceeecccccCCCCcEEEEEEEe
Q 001134 858 -----TQNKWFKVDDSTVTAVERERVLTEGAYMLLYARC 891 (1145)
Q Consensus 858 -----~~gkWy~fNDs~Vt~Vs~eeVls~~AYILFYeR~ 891 (1145)
+.++||.+.|++|+++++++|++.+||||||+|+
T Consensus 839 sd~~~~~~~Wy~iSDs~VrevS~d~vLkseAYlLFYERI 877 (877)
T KOG1873|consen 839 SDAGIPSGRWYYISDSIVREVSLDEVLKSEAYLLFYERI 877 (877)
T ss_pred hccCCCCcceEEecchheecccHHHHhhhhhhhhheecC
Confidence 2479999999999999999999999999999995
No 29
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.8e-36 Score=334.34 Aligned_cols=235 Identities=23% Similarity=0.369 Sum_probs=194.2
Q ss_pred ccCccccccCCCccchHHHHHHHhCChhHHHHHhhcccccccccccchHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhc
Q 001134 582 ELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSIG 661 (1145)
Q Consensus 582 el~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~~~~~cll~qL~kLf~~l~s~k~~isP~~fl~~L~~i~ 661 (1145)
.++++||.|.|.+||+|++||+|+++|+||++ +. +....+....|++|+|+.||. .+
T Consensus 12 ~t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~-~~--~~~~~~~~~~~l~~el~~lfs----------------~~---- 68 (268)
T cd02672 12 KTNYAGLENHITNSYCNSLLQLLYFIPPFRNF-TA--IILVACPKESCLLCELGYLFS----------------TL---- 68 (268)
T ss_pred cccccccccCCccchHHHHHHHHHhcHHHHHH-HH--hhcccCCcCccHHHHHHHHHH----------------HH----
Confidence 45789999999999999999999999999997 32 233334678999999999991 11
Q ss_pred cccCCCccccHHHHHHHHHHhhhhhhhhhhcCCCCCCCCccccccccccceEEeEEEEEcCCCCeeeeeeeeeeeeeeee
Q 001134 662 SQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIE 741 (1145)
Q Consensus 662 ~~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~~~~e~siI~~lF~G~l~s~ikC~~C~~~S~~~E~f~~LsL~Ip 741 (1145)
.+-|-++|++++..+... .+ ..|+.++.+.++++.|+|++|
T Consensus 69 ----------iq~F~~fll~~i~~~~~~-------------------~~----------~~C~~~s~~~~~~~~LsLpip 109 (268)
T cd02672 69 ----------IQNFTRFLLETISQDQLG-------------------TP----------FSCGTSRNSVSLLYTLSLPLG 109 (268)
T ss_pred ----------HHHHHHHHHHHHHHHhcc-------------------cC----------CCCCceeeccccceeeeeecC
Confidence 245778889888753210 00 679999999999999999998
Q ss_pred cc----cccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCc----eEEEeeeeccccc---------ccc
Q 001134 742 GD----IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPN----ILTIALKRFQSGK---------FGK 804 (1145)
Q Consensus 742 ~~----~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~----VLiI~LkRF~~~~---------~~K 804 (1145)
.. ..+|.+||+.|++.|.+. ++.|++|++++.+.|+.+|.++|+ ||+|||+||.... ..|
T Consensus 110 ~~~~~~~~sl~~cL~~~~~~E~~~---~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~ 186 (268)
T cd02672 110 STKTSKESTFLQLLKRSLDLEKVT---KAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKV 186 (268)
T ss_pred ccccccCCCHHHHHHHHhhhhhcc---cccccccCcccccEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEe
Confidence 53 469999999999998654 499999999999999999999999 9999999997421 257
Q ss_pred ccceEecCcccCCCCccCCCCCCCCceEEEEEEEEeecCCCCCCceEEEEEEcC-----CCcEEEEcCCcceeecccccC
Q 001134 805 LNKSIQFPEILDLAPYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKST-----QNKWFKVDDSTVTAVERERVL 879 (1145)
Q Consensus 805 I~~~V~FPe~LDLs~y~~~~s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~-----~gkWy~fNDs~Vt~Vs~eeVl 879 (1145)
+...|.||..+++..+.........+|+|+|||+|+|. ...+||||||||.. .++||+|||..|+++++
T Consensus 187 ~~~~v~f~~~~~~~~~~~~~~~~~~~Y~L~gvV~hig~--~~~~GHyva~vk~~~~~~~~~~WylFND~~V~~vs~---- 260 (268)
T cd02672 187 MQNKVSPKAIDHDKLVKNRGQESIYKYELVGYVCEIND--SSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPVSE---- 260 (268)
T ss_pred cCCeecccccccchhhhccCCCCCceEEEEEEEEEecC--CCCCCcEEEEEEccCCCCCCCcEEEecCeEEEEcCc----
Confidence 78899999888776665554455578999999999995 34899999999985 47899999999999987
Q ss_pred CCCcEEEEEE
Q 001134 880 TEGAYMLLYA 889 (1145)
Q Consensus 880 s~~AYILFYe 889 (1145)
.||||||+
T Consensus 261 --~aYiLfY~ 268 (268)
T cd02672 261 --LAYILLYQ 268 (268)
T ss_pred --hheeeecC
Confidence 79999995
No 30
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-37 Score=352.06 Aligned_cols=274 Identities=27% Similarity=0.469 Sum_probs=223.5
Q ss_pred cCccccccCCCccchHHHHHHHhCChhHHHHHhhcccccccccccchHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcc
Q 001134 583 LQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSIGS 662 (1145)
Q Consensus 583 l~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~~~~~cll~qL~kLf~~l~s~k~~isP~~fl~~L~~i~~ 662 (1145)
.+++||+|..-+||+|+.+|+|+..|.|++.++.... ..+....+.+.++ +.
T Consensus 85 ~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~~--------------------------~~~et~dlt~sfg--w~ 136 (1203)
T KOG4598|consen 85 HRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSEN--------------------------DSLETKDLTQSFG--WT 136 (1203)
T ss_pred cceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCCc--------------------------ccccchhhHhhcC--CC
Confidence 4689999999999999999999999999998763221 1111112111110 11
Q ss_pred ccCCCccccHHHHHHHHHHhhhhhhhhhhcCCCCCCCCccccccccccceEEeEEEEEcCCCCeeeeeeeeeeeeeeeec
Q 001134 663 QLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEG 742 (1145)
Q Consensus 663 ~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~~~~e~siI~~lF~G~l~s~ikC~~C~~~S~~~E~f~~LsL~Ip~ 742 (1145)
.-..++|+|.||+-+.++|.|+-..+ ..+...+|.+++.|++...+.|+.|+.++++.+.|++|+|++..
T Consensus 137 s~ea~~qhdiqelcr~mfdalehk~k----------~t~~~~li~~ly~g~m~d~v~cl~c~~e~~~~d~fld~pl~v~p 206 (1203)
T KOG4598|consen 137 SNEAYDQHDVQELCRLMFDALEHKWK----------GTEHEKLIQDLYRGTMEDFVACLKCGRESVKTDYFLDLPLAVKP 206 (1203)
T ss_pred cchhhhhhhHHHHHHHHHHHHHhhhc----------CchHHHHHHHHhcchHHHHHHHHHcCccccccceeecccccccC
Confidence 11235899999999999999975321 12344689999999999999999999999999999999999863
Q ss_pred -----ccccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeeccccc----cccccceEecCc
Q 001134 743 -----DIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSGK----FGKLNKSIQFPE 813 (1145)
Q Consensus 743 -----~~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~~----~~KI~~~V~FPe 813 (1145)
.-.+++++|..|..+|.|+|.|+|.|++|++++.|.|-+.|+.+|-+|+||||||.++. ..|++++|.||.
T Consensus 207 fg~~~ay~sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp~ 286 (1203)
T KOG4598|consen 207 FGAIHAYKSVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFPD 286 (1203)
T ss_pred CcchhhhhhHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccccCcc
Confidence 13599999999999999999999999999999999999999999999999999997643 379999999999
Q ss_pred ccCCCCccCCC------------------------------------------------------------------CCC
Q 001134 814 ILDLAPYMSGT------------------------------------------------------------------SDK 827 (1145)
Q Consensus 814 ~LDLs~y~~~~------------------------------------------------------------------s~~ 827 (1145)
.|||..|+... ..+
T Consensus 287 ~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~sg 366 (1203)
T KOG4598|consen 287 VLDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVKTSG 366 (1203)
T ss_pred cccHHHhhhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccCcccccCccccccCCcCchhhhhhHhhcCC
Confidence 99999885310 012
Q ss_pred CCceEEEEEEEEeecCCCCCCceEEEEEEcC-CCcEEEEcCCcceeecccccC-------------CCCcEEEEEEEeCC
Q 001134 828 LPIYRLYGVVVHLDIMNAAFSGHYVCYVKST-QNKWFKVDDSTVTAVERERVL-------------TEGAYMLLYARCSP 893 (1145)
Q Consensus 828 s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~-~gkWy~fNDs~Vt~Vs~eeVl-------------s~~AYILFYeR~s~ 893 (1145)
+..|+|++|.+|.| ++.+|||+||||+. +++||.|||.+|+.+...++. +.+||||+|+|+++
T Consensus 367 ~~~yelf~imihsg---~a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i~~sfgg~~~~~~~s~tnaymlmyr~id~ 443 (1203)
T KOG4598|consen 367 DNVYELFSVMVHSG---NAAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEIEKSFGGHPSGWNQSNTNAYMLMYRRIDP 443 (1203)
T ss_pred ccHHHhhhhheecC---CCCCceeeeeecccCcCceEEecCccccccCHHHHHHhhCCCCCCccccCcchhhhhhhhcCc
Confidence 34699999999999 78899999999987 679999999999999888774 24799999999998
Q ss_pred CCcc
Q 001134 894 RAPR 897 (1145)
Q Consensus 894 ~~~~ 897 (1145)
....
T Consensus 444 krn~ 447 (1203)
T KOG4598|consen 444 KRNA 447 (1203)
T ss_pred cccc
Confidence 6543
No 31
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-34 Score=359.03 Aligned_cols=308 Identities=30% Similarity=0.529 Sum_probs=264.8
Q ss_pred CcccCccccccCCCccchHHHHHHHhCChhHHHHHhhcccccccc-----cccchHHHHHHHHHHHHhcCCC-CCCHHHH
Q 001134 580 KVELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECA-----KKDWCFTCELENLILRAKDGKS-PLSPIGI 653 (1145)
Q Consensus 580 k~el~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~-----~~~~cll~qL~kLf~~l~s~k~-~isP~~f 653 (1145)
....+.+||.|+|||||||+.+|+|.+.+.++++++...+....+ .....+...+..++..++.... .+.|..+
T Consensus 241 ~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~~v~~~~~ 320 (842)
T KOG1870|consen 241 PSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNKSAVAPTSF 320 (842)
T ss_pred CCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCccccCchhh
Confidence 446688999999999999999999999999999998765544221 2234456677888888887654 7999999
Q ss_pred HHHHHhhccccCCCccccHHHHHHHHHHhhhhhhhhhhcCCCC-------------------CCCCccccccccccceEE
Q 001134 654 LSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNAS-------------------GPLEDETTLIGLTFGGYL 714 (1145)
Q Consensus 654 l~~L~~i~~~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~-------------------~~~~~e~siI~~lF~G~l 714 (1145)
...+..+.+.|.++.|||.+||+-+|+|.||+.+......... .......++|.++|.|.+
T Consensus 321 ~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~~~~~ 400 (842)
T KOG1870|consen 321 RTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLFDGTY 400 (842)
T ss_pred hhhhhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccceeeeeeccee
Confidence 9999999999999999999999999999999877544333110 112345789999999999
Q ss_pred eEEEEEcCCCCeeeeeeeeeeeeeeeec----------------------------------------------------
Q 001134 715 RSKIKCTKCHGKSERQERMMDLTVEIEG---------------------------------------------------- 742 (1145)
Q Consensus 715 ~s~ikC~~C~~~S~~~E~f~~LsL~Ip~---------------------------------------------------- 742 (1145)
.+.++|..|+.++..+++|.+|++++|.
T Consensus 401 ~S~~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~ 480 (842)
T KOG1870|consen 401 KSTLQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGRIRDLLEYLSRTVGLLSWELKP 480 (842)
T ss_pred cccccCccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccccchHHHHHHHHHHHhccchhhccc
Confidence 9999999999999999999999887630
Q ss_pred --------------------------------------------------------------------------------
Q 001134 743 -------------------------------------------------------------------------------- 742 (1145)
Q Consensus 743 -------------------------------------------------------------------------------- 742 (1145)
T Consensus 481 ~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~ 560 (842)
T KOG1870|consen 481 VEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVSVLSG 560 (842)
T ss_pred ceeccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeeccccccccCcccCCCccccCCcceeeccCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 001134 743 -------------------------------------------------------------------------------- 742 (1145)
Q Consensus 743 -------------------------------------------------------------------------------- 742 (1145)
T Consensus 561 ~~~t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (842)
T KOG1870|consen 561 AQSTEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVSRDPSEDDNSDQDLSLECLSEESALRFFQS 640 (842)
T ss_pred CcccccchhhHHhhcccccCCcCccccccCCCcccccccccccccccccccCCChhHhccccccchhhccCccccccccc
Confidence
Q ss_pred -----------------------------------------------------ccccHHHHHHHhccccccCCCCccccC
Q 001134 743 -----------------------------------------------------DIGNLEEALRRYTGTEILDGENKYKCD 769 (1145)
Q Consensus 743 -----------------------------------------------------~~~SLed~L~~f~~~E~Ldgdn~y~C~ 769 (1145)
...+|++||..|+.+|.|..+++++|+
T Consensus 641 ~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cl~~F~~~E~L~~~~~w~C~ 720 (842)
T KOG1870|consen 641 LESRNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGSPAPNSLESCLELFSEPETLGKDDRWYCP 720 (842)
T ss_pred ccccccccccccCCCceeecccChhhccccccccccccccccccccccccCCCCcccHHHHHHhhcchhcCCccccccCh
Confidence 013899999999999999999999999
Q ss_pred CCCCcceEEEEEEEeeCCceEEEeeeecccccc--ccccceEecC-cccCCCCccCCCCCCCCceEEEEEEEEeecCCCC
Q 001134 770 RCKSYEKAKKKLTIVEAPNILTIALKRFQSGKF--GKLNKSIQFP-EILDLAPYMSGTSDKLPIYRLYGVVVHLDIMNAA 846 (1145)
Q Consensus 770 kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~~~--~KI~~~V~FP-e~LDLs~y~~~~s~~s~~YeL~gVIvH~Gt~nsa 846 (1145)
.|+++..|.|++.+.++|+|||||||||++.+. .|+.+.|+|| ..||+++|+..... ..|+|+||++|+| ..
T Consensus 721 ~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v~fPi~~ld~s~~~~~~~~--~~Y~l~av~nHyG---~l 795 (842)
T KOG1870|consen 721 QCKELRQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKVEFPLGSLDLSEFVVNKEQ--VLYDLYAVGNHYG---QL 795 (842)
T ss_pred HHHHHHHHhhhhhhhhCCceEEEEeecceeechhhhhhCccccCCCcCCCcchhhccCcc--ceeeeeeeecccC---Cc
Confidence 999999999999999999999999999987543 7999999999 68999999887655 8999999999999 47
Q ss_pred CCceEEEEEEcC-CCcEEEEcCCcceeecccccCCCCcEEEEEEEeC
Q 001134 847 FSGHYVCYVKST-QNKWFKVDDSTVTAVERERVLTEGAYMLLYARCS 892 (1145)
Q Consensus 847 ~sGHYVAyVR~~-~gkWy~fNDs~Vt~Vs~eeVls~~AYILFYeR~s 892 (1145)
.+|||+||.|+. +++||.|||+.|.+++++++.++.||+|||+|++
T Consensus 796 ~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i~t~~aY~Lfy~r~~ 842 (842)
T KOG1870|consen 796 SGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEIDTEAAYVLFYRRLD 842 (842)
T ss_pred CCcchhhhhhcCCCCceEEeccccCCCCChhhcccccceEEEEEecC
Confidence 799999999995 8899999999999999999999999999999964
No 32
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-34 Score=365.62 Aligned_cols=303 Identities=31% Similarity=0.470 Sum_probs=256.4
Q ss_pred hcccCCcccCccccccCCCccchHHHHHHHhCChhHHHHHhhcccccccccccchHHHHHHHHHHHHhcCCC-CCCHHHH
Q 001134 575 LYNWNKVELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKS-PLSPIGI 653 (1145)
Q Consensus 575 l~~~~k~el~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~~~~~cll~qL~kLf~~l~s~k~-~isP~~f 653 (1145)
.|.+.+....|+||.|+||||||||+||+||+++.||+.++..........+...+..+|+.||..|+..+. ++.+..+
T Consensus 160 ~~d~k~~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~~~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~ 239 (1093)
T KOG1863|consen 160 PYDSKRLTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFTGHEDPRRSIPLALQRLFYELQMSKRKYVDTSEL 239 (1093)
T ss_pred hhhhhhcCCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCCCcccccchHHHHHHHHHHHHhhcCCCCcCchhh
Confidence 455555555569999999999999999999999999999987653223334455588999999999998765 9999999
Q ss_pred HHHHHhhccccCCCccccHHHHHHHHHHhhhhhhhhhhcCCCCCCCCccccccccccceEEeEEEEEcCCCCeeeeeeee
Q 001134 654 LSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERM 733 (1145)
Q Consensus 654 l~~L~~i~~~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~~~~e~siI~~lF~G~l~s~ikC~~C~~~S~~~E~f 733 (1145)
...+.... .....|||++||++.|+|.|+..+.... ....|.++|.|.+.+.+.|..|...+.+.|.|
T Consensus 240 ~~~~~~~~--~~~~~QqDvqEf~~~l~d~LE~~~~~~~----------~~~~l~~lf~g~~~~~i~c~~~~~~s~r~e~f 307 (1093)
T KOG1863|consen 240 TKSLGWDS--NDSFEQQDVQEFLTKLLDWLEDSMIDAK----------VENTLQDLFTGKMKSVIKCIDVDFESSRSESF 307 (1093)
T ss_pred hhhhhccc--ccHHhhhhHHHHHHHHHHHHHhhccchh----------hhhhhhhhhcCCcceEEEEEeeeeeccccccc
Confidence 98886443 4556899999999999999987543221 24568999999999999999999999999999
Q ss_pred eeeeeeeecccccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeecccc----ccccccceE
Q 001134 734 MDLTVEIEGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSG----KFGKLNKSI 809 (1145)
Q Consensus 734 ~~LsL~Ip~~~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~----~~~KI~~~V 809 (1145)
+++.+++.+ ..+|.++|..|+..|.++|+|+ +|..|...+.|.+...+..||++|.|+|+||.+. ...|+++.+
T Consensus 308 ~d~ql~~~g-~~nl~~sf~~y~~~E~l~gdn~-~~~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~ 385 (1093)
T KOG1863|consen 308 LDLQLNGKG-VKNLEDSLHLYFEAEILLGDNK-YDAECHGLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKF 385 (1093)
T ss_pred cCccccccc-hhhHHHHHHHhhhHHHhcCCcc-ccccccchhhhhcceeeccCCchhhhhhhheeeeccCCceeehhhcc
Confidence 999999987 4679999999999999999998 8999999999999999999999999999999863 457999999
Q ss_pred ecCcccCCCCccCC----CCCCCCceEEEEEEEEeecCCCCCCceEEEEEEcC-CCcEEEEcCCcceeecccccCC----
Q 001134 810 QFPEILDLAPYMSG----TSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKST-QNKWFKVDDSTVTAVERERVLT---- 880 (1145)
Q Consensus 810 ~FPe~LDLs~y~~~----~s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~-~gkWy~fNDs~Vt~Vs~eeVls---- 880 (1145)
.||..|+|.+|+.. .....+.|.|.||++|.| ..++|||++|++.. .++|++|||..|+.++..+++.
T Consensus 386 ~fp~~i~~d~~~~~~~~~~~~~~~~y~l~~v~vh~g---~~~~ghy~~~i~~~~~~~w~kfdd~~v~~~~~~~~l~~~~g 462 (1093)
T KOG1863|consen 386 EFPLIIDMDRYLSRFKAEESERSAVYSLHAVLVHSG---DAHSGHYVAYINPKLDGKWVKFDDLVVTVVSEKEALEQNYG 462 (1093)
T ss_pred CCccccccchhccccchhhhhccceeccchhhcccc---cccCccceeeecchhhccceeccCceeeeccHHHHHHhhCC
Confidence 99999999999762 122225999999999976 78999999999954 7899999999999998777642
Q ss_pred ------------CCcEEEEEEEeCCC
Q 001134 881 ------------EGAYMLLYARCSPR 894 (1145)
Q Consensus 881 ------------~~AYILFYeR~s~~ 894 (1145)
..||||+|-|.+..
T Consensus 463 ~~~~~~~~~~~~~~~~~lv~~~~s~~ 488 (1093)
T KOG1863|consen 463 TEEIELSSTADFKNAYMLVYIRDSCE 488 (1093)
T ss_pred CcchhhhcccccCCcceEEEEecCcH
Confidence 12899999998753
No 33
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=100.00 E-value=4.4e-32 Score=304.25 Aligned_cols=276 Identities=23% Similarity=0.396 Sum_probs=233.5
Q ss_pred cccccCCCccchHHHHHHHhCChhHHHHHhhcccccccccccchHHHHHHHHHHHHh-cC-CCCCCHHHHHHHHHhhccc
Q 001134 586 CGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAK-DG-KSPLSPIGILSRLQSIGSQ 663 (1145)
Q Consensus 586 ~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~~~~~cll~qL~kLf~~l~-s~-k~~isP~~fl~~L~~i~~~ 663 (1145)
.||.|.+++||+||+||+|+++|++|+.++.+. . +.+..|++|+|+.||.+|. .. ...+.+..|+.+++.....
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~---~-c~~e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~~~~a 76 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL---E-CPKEFCLLCELGFLFDMLDSKAKGINCQASNFLRALSWIPEA 76 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc---C-CCccccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhcCHHH
Confidence 499999999999999999999999999998766 2 4688999999999999998 55 3566788999999887766
Q ss_pred cCCCccccHHHHHHHHHHhhhhhhhhhhcC---CCCCCCCccccccccccceEEeEEEEEcCCCCeeeeeeeeeeeeeee
Q 001134 664 LGNGREEDAHEFLRYAIDTMQSVCIEEAGV---NASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEI 740 (1145)
Q Consensus 664 F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~---~~~~~~~~e~siI~~lF~G~l~s~ikC~~C~~~S~~~E~f~~LsL~I 740 (1145)
...+.|+|.++|+++|+++|+.++...... ............|.++|+......++|..|+..+.+.+....+.+..
T Consensus 77 ~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~c~~c~~~~~~~~~~~~~~l~y 156 (295)
T PF13423_consen 77 AALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSENSSSSPESSISQLFGTSFETTIRCTSCGHESVKESSTLVLDLPY 156 (295)
T ss_pred HhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccccccCCCcchHHHHhCcceeeeecccccCCeEEeecceeeeeccC
Confidence 667779999999999999999877654421 01112234556799999999999999999999999999888888877
Q ss_pred ec--ccccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeeccccc--cccccceEecCcccC
Q 001134 741 EG--DIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSGK--FGKLNKSIQFPEILD 816 (1145)
Q Consensus 741 p~--~~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~~--~~KI~~~V~FPe~LD 816 (1145)
|. ...++.++|+.++..+.... ..|++|++++..+.+..|.++|+||.|.++|+.... ..|+...+.+|..++
T Consensus 157 p~~~~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~~~w~~~~~~~~~ip~~i~ 233 (295)
T PF13423_consen 157 PPSNSNVTFSQVLEHSLNREQQTR---AWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEEEFWPKKNWLKIWIPPSIN 233 (295)
T ss_pred CCCCccchHHHHHHHHHhhccccc---ccccccccccceeeeeeccCCCcEEEEEccCCCcccccccccCCceecceeee
Confidence 65 35799999999999998876 899999999999999999999999999999987652 367888999999999
Q ss_pred CCCccCCC-------CCCCCceEEEEEEEEeecCCCCCCceEEEEEEcC---CCcEEEEcCCcc
Q 001134 817 LAPYMSGT-------SDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKST---QNKWFKVDDSTV 870 (1145)
Q Consensus 817 Ls~y~~~~-------s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~---~gkWy~fNDs~V 870 (1145)
+..++... .....+|+|.|+|+|+|. +..+||||+|||.. +.+||+|||..|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~--~~~~~HlVs~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 234 LPHFIADDSQSDLEGESGIFKYELRSMVCHIGD--SIESGHLVSLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred ccccccccccccccCCCCceEEEEEEEEEEecC--CCCCCceEEEEEcCCCCCCcEEEECcEeC
Confidence 98877533 334469999999999995 78899999999985 369999999876
No 34
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=1.9e-30 Score=282.99 Aligned_cols=195 Identities=25% Similarity=0.386 Sum_probs=152.6
Q ss_pred ccccCCC-ccchHHHHHHHhCChhHHHHHhhcccccccccccchHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhccccC
Q 001134 587 GLINCGN-SCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSIGSQLG 665 (1145)
Q Consensus 587 GL~NlGN-TCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~~~~~cll~qL~kLf~~l~s~k~~isP~~fl~~L~~i~~~F~ 665 (1145)
|+.|.+| +|||-|+|-+||.
T Consensus 1 g~~~~~~~~cy~d~~~~~~f~----------------------------------------------------------- 21 (241)
T cd02670 1 GAQNHCNVSCYLDALLFAMFA----------------------------------------------------------- 21 (241)
T ss_pred CCccccCceeehHHHHHHHHH-----------------------------------------------------------
Confidence 7899999 9999999999875
Q ss_pred CCccccHHHHHHHHHHhhhhhhhhhhcCCCCCCCCccccccccccce-EEeEEEEEcCCCCeeeeeeeeeeeeeeeec--
Q 001134 666 NGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGG-YLRSKIKCTKCHGKSERQERMMDLTVEIEG-- 742 (1145)
Q Consensus 666 ~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~~~~e~siI~~lF~G-~l~s~ikC~~C~~~S~~~E~f~~LsL~Ip~-- 742 (1145)
+|||+.|||.+|+++|+..++. +.-++|.| +...... +...|.++.|.++.+.
T Consensus 22 --~q~D~~e~~~~l~~~~~~~~~~---------------~~~~~~~~g~~~~~~~-------~~~~e~~l~l~ip~~~~~ 77 (241)
T cd02670 22 --EQQDPEEFFNFITDKLLMPLLE---------------PKVDIIHGGKKDQDDD-------KLVNERLLQIPVPDDDDG 77 (241)
T ss_pred --HhcCHHHHHHHHHHHHhhhhhh---------------HHHHHHhcCccccccc-------cccccceEEeecccCCCC
Confidence 6999999999999999753322 12334433 2221110 3345667777766543
Q ss_pred ccccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeeccccc--cccccceEecCcccCCCCc
Q 001134 743 DIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSGK--FGKLNKSIQFPEILDLAPY 820 (1145)
Q Consensus 743 ~~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~~--~~KI~~~V~FPe~LDLs~y 820 (1145)
...+|++||+.|+..|. |.++|++|+||||||.+.. ..|+++.|.||+.|||.+|
T Consensus 78 ~~~tLedcLe~~~~~e~-----------------------i~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~fP~~Ldl~~~ 134 (241)
T cd02670 78 GGITLEQCLEQYFNNSV-----------------------FAKAPSCLIICLKRYGKTEGKAQKMFKKILIPDEIDIPDF 134 (241)
T ss_pred CcCCHHHHHHHHhchhh-----------------------hhhCCCeEEEEEEccccCCCcceeCCcEECCCCcCCchhh
Confidence 45799999999998775 8899999999999998743 5799999999999999999
Q ss_pred cCCCC----------------------CCCCceEEEEEEEEeecCCCCCCceEEEEEEcCC------------CcEEEEc
Q 001134 821 MSGTS----------------------DKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQ------------NKWFKVD 866 (1145)
Q Consensus 821 ~~~~s----------------------~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~~------------gkWy~fN 866 (1145)
+.... ....+|+|+|||+|.|. +.++|||+||||... ++||+||
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~--s~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~FD 212 (241)
T cd02670 135 VADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGT--SLETGHYVAFVRYGSYSLTETDNEAYNAQWVFFD 212 (241)
T ss_pred cccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCC--CCCCcCeEEEEECCcccccccccCCCCCeEEEec
Confidence 75431 22358999999999995 688999999999864 6899999
Q ss_pred CCcceeeccc------ccCCCCcEEEEEE
Q 001134 867 DSTVTAVERE------RVLTEGAYMLLYA 889 (1145)
Q Consensus 867 Ds~Vt~Vs~e------eVls~~AYILFYe 889 (1145)
|..|+.+..+ .+..+.||||||+
T Consensus 213 D~~v~~~~~~~~~~~~~~~~~~aYmLFYq 241 (241)
T cd02670 213 DMADRDGVSNGFNIPAARLLEDPYMLFYQ 241 (241)
T ss_pred CcccccccccccccchhcccCCceEEEeC
Confidence 9998876432 4567899999996
No 35
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.2e-30 Score=310.68 Aligned_cols=307 Identities=29% Similarity=0.458 Sum_probs=244.5
Q ss_pred CccccccCCCccchH--HHHHHHhCChhHHHHHhhcccccccc-cccchHHHHHHHHHHHHh---cCCCCCCHHHHHHHH
Q 001134 584 QPCGLINCGNSCYAN--VVLQCLAFTPPLTAYFLQGLHSKECA-KKDWCFTCELENLILRAK---DGKSPLSPIGILSRL 657 (1145)
Q Consensus 584 ~p~GL~NlGNTCYmN--SVLQ~L~~iP~Fr~~LL~~~~~~~~~-~~~~cll~qL~kLf~~l~---s~k~~isP~~fl~~L 657 (1145)
...|..|.+++|+-| +|.|.+..+.+++...+......... .....++..+..++.... .....+.|..+...+
T Consensus 231 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~~~~~~ 310 (587)
T KOG1864|consen 231 RVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPTRFISDL 310 (587)
T ss_pred cccCccccCccccccchhhHHHHHhhhhhcccccchhhcccchhhhhHHHHHHhhhhccchhhhcccccccCcchhhhhh
Confidence 457999999999999 99999999998886544322211110 011122223333332221 123567899999999
Q ss_pred HhhccccCCCccccHHHHHHHHHHhhhhhhhhhhcC-----C-----CCCC------------CCccccccccccceEEe
Q 001134 658 QSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGV-----N-----ASGP------------LEDETTLIGLTFGGYLR 715 (1145)
Q Consensus 658 ~~i~~~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~-----~-----~~~~------------~~~e~siI~~lF~G~l~ 715 (1145)
++....|..+.||||+||+.++++.+.+........ . .... ......+++.+|.|++.
T Consensus 311 ~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v~~lf~g~l~ 390 (587)
T KOG1864|consen 311 IKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWVSKLFQGILT 390 (587)
T ss_pred hhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHHHHhhcCeee
Confidence 999999999999999999999999998755433311 0 0000 11256789999999999
Q ss_pred EEEEEcCCCCeeeeeeeeeeeeeeeec-ccccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEee
Q 001134 716 SKIKCTKCHGKSERQERMMDLTVEIEG-DIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIAL 794 (1145)
Q Consensus 716 s~ikC~~C~~~S~~~E~f~~LsL~Ip~-~~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~L 794 (1145)
.+..|..|...+.+.+.|.+++++++. ...++..+|+.|..+|.+.|+++|.|++|...+.|.+.+.++.+|.+|+|||
T Consensus 391 ~et~Clsc~t~T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~~l~~k~lp~~L~l~L 470 (587)
T KOG1864|consen 391 NETRCLSCETITSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLSGENKYSCENCCSLQEAERRLKIKKLPYVLTLHL 470 (587)
T ss_pred eeeeeccccccccccccccccceeccccccccHHHHHHHhcchhhccCCCcccccccCchhhHHHhccccCCcceeeeeh
Confidence 999999999999999999999999985 4689999999999999999999999999999999999999999999999999
Q ss_pred eecccc----ccccccceEecCcccCCCCccCCCCCCCCceEEEEEEEEeecCCCCCCceEEEEEEcCCCcEEEEcCCcc
Q 001134 795 KRFQSG----KFGKLNKSIQFPEILDLAPYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQNKWFKVDDSTV 870 (1145)
Q Consensus 795 kRF~~~----~~~KI~~~V~FPe~LDLs~y~~~~s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~~gkWy~fNDs~V 870 (1145)
|||.++ ...|+...|.||..|.+.............|.|+|||||.|. +.+.|||+||+|...-.|++|||..|
T Consensus 471 krfk~~~~~~~~~kl~~~v~~plel~l~~~~~~~~~~~~~Y~L~avVvH~G~--~p~~GHYia~~r~~~~nWl~fdD~~V 548 (587)
T KOG1864|consen 471 KRFKYSEQQNRYTKLLYRVVFPLELRLKDTLKDDNNPDRKYDLVAVVVHLGS--TPNRGHYVAYVKSLDFNWLLFDDDNV 548 (587)
T ss_pred hccccccccccccccccccccccceeeccccccccCccceeeEEEEEEeccC--CCCCcceEEEEeeCCCCceecccccc
Confidence 999865 347999999999999887665554443468999999999995 89999999999984444999999999
Q ss_pred eeecccccCC---CCcEEEEEEEeC
Q 001134 871 TAVERERVLT---EGAYMLLYARCS 892 (1145)
Q Consensus 871 t~Vs~eeVls---~~AYILFYeR~s 892 (1145)
..++.+.|.. ..+|+++|.+.-
T Consensus 549 ~~~s~~~v~~~~~~s~~~~~~~~~~ 573 (587)
T KOG1864|consen 549 EPISEEPVSEFTGSSGDTLFYYVQV 573 (587)
T ss_pred cccCcchhhhccCCCccceeeeEEe
Confidence 9999988864 468888887754
No 36
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.8e-29 Score=281.55 Aligned_cols=296 Identities=23% Similarity=0.307 Sum_probs=229.2
Q ss_pred ccCccccccCCCccchHHHHHHHhCChhHHHHHhhccccccccc---ccchHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001134 582 ELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAK---KDWCFTCELENLILRAKDGKSPLSPIGILSRLQ 658 (1145)
Q Consensus 582 el~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~~---~~~cll~qL~kLf~~l~s~k~~isP~~fl~~L~ 658 (1145)
..-|+||.|+|||||||+.+|+|..+|+++..+........... ...-+..+++.+|..+... ..+.|..++..+.
T Consensus 102 ~~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~-~~v~pi~llqtl~ 180 (473)
T KOG1872|consen 102 LPLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEK-GAVAPINLLQTLS 180 (473)
T ss_pred ccCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhcc-CCcchHHHHHHHH
Confidence 44678999999999999999999999999888765432222211 1234667889999998887 8999999999999
Q ss_pred hhccccCC------CccccHHHHHHHHHHhhhhhhhhhhcCCCCCCCCccccccccccceEEeEEEEEcCCCCeeee--e
Q 001134 659 SIGSQLGN------GREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSER--Q 730 (1145)
Q Consensus 659 ~i~~~F~~------g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~~~~e~siI~~lF~G~l~s~ikC~~C~~~S~~--~ 730 (1145)
+..|+|.. ..||||.|++..++-.++........ .......+..+|++.+..+..|..-...... .
T Consensus 181 ~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~------~~~~~~~~d~~f~~~~~~t~~~~e~e~~~~~~~~ 254 (473)
T KOG1872|consen 181 SQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATE------APCLEAEAAAGFGAEFSTTMSCSEGEDEGGGAGR 254 (473)
T ss_pred HHhHHHHHHhhhhhHHHHHHhHhHHHhhhheecccccccc------ccchhHHHHHhhccccccceeeccCccccccccc
Confidence 88888754 78999999999999999864322111 1134456889999999999999887666443 7
Q ss_pred eeeeeeeeeeecccccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeecccc----cccccc
Q 001134 731 ERMMDLTVEIEGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSG----KFGKLN 806 (1145)
Q Consensus 731 E~f~~LsL~Ip~~~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~----~~~KI~ 806 (1145)
|.|..|.+-|......+...|..-+..+.- ...+.-+......|.+.|.++|.||+|++.||.+. ...||.
T Consensus 255 E~~~~L~c~i~~~~~~~k~Gl~~~~~e~~~-----K~s~~lgr~a~y~k~~~isrlP~ylTvq~vrf~~k~k~~~~akil 329 (473)
T KOG1872|consen 255 ELVDQLKCIINKTVHDMRFGLKSGLSEEIQ-----KISSILGRPAAYQKVMYISRLPEYLTVQEVRFFSKAKIMVVAKIL 329 (473)
T ss_pred ccccccceEEeeeechhhhhhhhhhhhhhh-----ccCcccCCChHHHHHhHhhcCcccceEEEEEEEeccccchHHHHH
Confidence 889999999987777777777665543322 12223333344567889999999999999999864 346899
Q ss_pred ceEecCcccCCCCccCCC--------------------------------------------------CCCCCceEEEEE
Q 001134 807 KSIQFPEILDLAPYMSGT--------------------------------------------------SDKLPIYRLYGV 836 (1145)
Q Consensus 807 ~~V~FPe~LDLs~y~~~~--------------------------------------------------s~~s~~YeL~gV 836 (1145)
+.|.||..||...++.+. ......|+|.||
T Consensus 330 ~~V~fP~~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~~~~~~~e~~~~~~~~~s~~~g~y~l~~v 409 (473)
T KOG1872|consen 330 NAVNFPKDLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQERLKEVPLEGMYNKSGGKSRNSGLYDLQLV 409 (473)
T ss_pred HhccChhhhhHHHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCcccccccccchhccccccccccceeeeeEe
Confidence 999999999988766420 011356999999
Q ss_pred EEEeecCCCCCCceEEEEEEcCCCcEEEEcCCcceeecccccCC-------CCcEEEEEEEe
Q 001134 837 VVHLDIMNAAFSGHYVCYVKSTQNKWFKVDDSTVTAVERERVLT-------EGAYMLLYARC 891 (1145)
Q Consensus 837 IvH~Gt~nsa~sGHYVAyVR~~~gkWy~fNDs~Vt~Vs~eeVls-------~~AYILFYeR~ 891 (1145)
|.|.|. +..+|||++++|..+++|++|||..|+.+..+.+++ ..||||+|+-.
T Consensus 410 ithkgr--ss~sghy~aw~r~s~~~w~~fdd~~vs~v~~e~i~~lsgggd~~~ayvllyk~~ 469 (473)
T KOG1872|consen 410 ITHKGR--SSKSGHYVAWNRVSEDKWGHFDDDMVSFVLGETILSLSGGGDWHSAYVLLYKAR 469 (473)
T ss_pred eecccc--ccCCCcceEEEeccCCceeeccccccccccccceeeecCCCccchhhheeeccc
Confidence 999996 899999999999988999999999999999888864 46999999843
No 37
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.95 E-value=2.2e-27 Score=262.89 Aligned_cols=357 Identities=19% Similarity=0.253 Sum_probs=262.8
Q ss_pred CCCcCCccceeeecccC--CCCCCC-ccchhhhhhccccCCcccccccccCccccCcccCCcCcc-hhhhhhhcccCCcc
Q 001134 507 DNVQRSSAMSAQIENSP--SNVGNG-LKTSLWKAVDQFRGSKSSKQCLSVGCETAGRYSDKGLFS-YELFVKLYNWNKVE 582 (1145)
Q Consensus 507 d~~~~s~af~~ql~e~~--~~g~~d-Lk~~~lk~~d~v~dp~LskhL~~~Gi~I~~~~keksLf~-~E~~lkl~~~~k~e 582 (1145)
...++|.|+.|.|++.+ +++..+ ++.+++++.++..+|.+....-...-......-. .+.. .......+....+-
T Consensus 53 gr~~kS~A~~h~l~~ghhvf~nl~telkfyvlpe~~ei~d~s~~~ikhslkptftr~~cp-~lD~~nr~~~raLd~~tYL 131 (442)
T KOG2026|consen 53 GRGEKSHAYTHSLEEGHHVFLNLSTELKFYVLPENYEIDDPSLGDIKHSLKPTFTKTDCP-NLDKVNRKLSRALDGSTYL 131 (442)
T ss_pred CcCccccchhccccccccceeccccceeEEecchhccccCchhhhhhccccceeehhhcc-cccccchhhhhhhcCCcce
Confidence 34688999999999984 455555 7788999888888887655433111111110000 0100 11122334444556
Q ss_pred cCccccccCCCccchHHHHHHHhCChhHHHHHhhcccccccccccchHHHHHHHHHHHHhcC---CCCCCHHHHHHHHHh
Q 001134 583 LQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDG---KSPLSPIGILSRLQS 659 (1145)
Q Consensus 583 l~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~~~~~cll~qL~kLf~~l~s~---k~~isP~~fl~~L~~ 659 (1145)
.+.+||.|+-++-|.|++||+|.+.+++|+|++...... +....+...|..+++++|.. +..++|.++++++..
T Consensus 132 pG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n~~---d~~~~lv~rl~~l~rklw~~r~fk~hvSphe~lqaV~~ 208 (442)
T KOG2026|consen 132 PGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEENYF---DNLTELVQRLGELIRKLWNPRNFKGHVSPHEFLQAVMK 208 (442)
T ss_pred eeeeccchhhhHHHHHHHHHHHhccchhhhhhccccccc---chhHHHHHHHHHHHHHhcChhhhcccCCHHHHHHHHHH
Confidence 678999999999999999999999999999998653211 33456788899999999987 478999999998865
Q ss_pred h-ccccCCCccccHHHHHHHHHHhhhhhhhhhhcCCCCCCCCccccccccccceEEeEEEEEcC----CCCeeeeeeeee
Q 001134 660 I-GSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTK----CHGKSERQERMM 734 (1145)
Q Consensus 660 i-~~~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~~~~e~siI~~lF~G~l~s~ikC~~----C~~~S~~~E~f~ 734 (1145)
. ...|..++|.|+.|||.|||+.||..+. ..+...+||+..|+|.++..-+-.. -.......-+|+
T Consensus 209 ~s~k~f~i~~q~DpveFlswllntlhs~l~---------~~k~~~SIi~~~fqG~~ri~k~~~~~~~~~~~~~i~~~~Fl 279 (442)
T KOG2026|consen 209 LSKKRFRIGQQSDPVEFLSWLLNTLHSDLR---------GSKKASSIIHKSFQGEVRIVKEKQGEASENENKEISVMPFL 279 (442)
T ss_pred HhhhheecCCCCCHHHHHHHHHHHHHHHhC---------CCCCchhHhhHhhcceEEeeeeccccccccccceEEEEeeE
Confidence 5 4479999999999999999999997542 1225568999999999976554433 122345567899
Q ss_pred eeeeeeecc-------------cccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeeccccc
Q 001134 735 DLTVEIEGD-------------IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSGK 801 (1145)
Q Consensus 735 ~LsL~Ip~~-------------~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~~ 801 (1145)
.|+|++|.. -..|-+.|..|.....-+ +. ....+ +++.+.++|+|||+|++||..++
T Consensus 280 ~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~e----~~-----~~~~~-~rf~l~k~P~ylifh~~rF~kNn 349 (442)
T KOG2026|consen 280 YLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGETVTE----VV-----TPKLA-MRFRLTKLPRYLIFHMKRFKKNN 349 (442)
T ss_pred EEEecCCCCCcccchhhhcccccchHHHHHHHhcCceeee----ec-----chhhh-hheeeecCCceEEEEeeeccccC
Confidence 999999742 247888899887544322 11 11222 78899999999999999998776
Q ss_pred c--ccccceEecC-cccCCCCccC---CCCCCCCceEEEEEEEEeecCCCCCCceEEEEEEcC-CCcEEEEcCCcceeec
Q 001134 802 F--GKLNKSIQFP-EILDLAPYMS---GTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKST-QNKWFKVDDSTVTAVE 874 (1145)
Q Consensus 802 ~--~KI~~~V~FP-e~LDLs~y~~---~~s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~-~gkWy~fNDs~Vt~Vs 874 (1145)
+ .|+.+-|+|| ..+++.++.. ....+...|.|.|-++|. ..-|||..++++. .++||.++|-+|++..
T Consensus 350 ~f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~i~~-----~e~~~~riqi~~~~s~kW~eiqdl~v~e~~ 424 (442)
T KOG2026|consen 350 FFKEKNPTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVANAIHE-----DEDGNFRIQIYDNSSEKWYEIQDLHVTERL 424 (442)
T ss_pred cccccCCceeeccCCccchhhhhhhcccccCccccccchhhhhcC-----cccCceEEEEEeCCCcceEEecccchhhhh
Confidence 5 7999999999 5565554432 223334689999999995 4579999999986 6799999999999999
Q ss_pred ccccCCCCcEEEEEEEe
Q 001134 875 RERVLTEGAYMLLYARC 891 (1145)
Q Consensus 875 ~eeVls~~AYILFYeR~ 891 (1145)
.+.+....+||.+|++.
T Consensus 425 ~qmi~L~Es~iQiwe~~ 441 (442)
T KOG2026|consen 425 PQMIFLKESFIQIWEKQ 441 (442)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 99888889999999874
No 38
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.2e-26 Score=256.20 Aligned_cols=303 Identities=25% Similarity=0.341 Sum_probs=221.5
Q ss_pred ccCccccccCCCccchHHHHHHHhCChhHHHHHhhcccccccc-cccchHHHHHHHHHHHHhc--------------C--
Q 001134 582 ELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECA-KKDWCFTCELENLILRAKD--------------G-- 644 (1145)
Q Consensus 582 el~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~-~~~~cll~qL~kLf~~l~s--------------~-- 644 (1145)
.+.|+|+.|-||.||||++||+|+.|+||.+.+.......... .....++.++..++..... .
T Consensus 25 ~i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~~~ 104 (420)
T KOG1871|consen 25 PIDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVKEGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVPEH 104 (420)
T ss_pred ccCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCceecccchhHHHHHHHHhhccccchhhhhhhccCCcccc
Confidence 3789999999999999999999999999999764332111110 1122344444444322210 0
Q ss_pred -------------CCCCCHHHHHHHHHhhcc--ccCCCccccHHHHHHHHHHhhhhhhhhhhcC--------------C-
Q 001134 645 -------------KSPLSPIGILSRLQSIGS--QLGNGREEDAHEFLRYAIDTMQSVCIEEAGV--------------N- 694 (1145)
Q Consensus 645 -------------k~~isP~~fl~~L~~i~~--~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~--------------~- 694 (1145)
..++-|..+...+..... ....|+|+||.|||.++||.|+++..+.... +
T Consensus 105 ~~~~ses~~~d~~~dav~~d~~~~~l~t~~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~i~~ 184 (420)
T KOG1871|consen 105 VVEKSESNKSDLQGDAVKPDPIYLDLLTMSRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGLINN 184 (420)
T ss_pred ccchhhhhhhcccCccccCCchhhhcccCCchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCcccccccccccc
Confidence 022333333333332222 3467899999999999999999876432210 0
Q ss_pred ----CCCC--------------------------CCccccccccccceEEeEEEEEcCCCCeeeeeeeeeeeeeeeec-c
Q 001134 695 ----ASGP--------------------------LEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEG-D 743 (1145)
Q Consensus 695 ----~~~~--------------------------~~~e~siI~~lF~G~l~s~ikC~~C~~~S~~~E~f~~LsL~Ip~-~ 743 (1145)
..+. ..-..+.|.++|+|+++..+.-.. .+++...+||..|.|+|.. .
T Consensus 185 ~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~-nkeS~tlqPF~tlqldiq~~~ 263 (420)
T KOG1871|consen 185 GNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPS-NKESATLQPFFTLQLDIQSEK 263 (420)
T ss_pred cccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccc-cccccccCccceeeeeeeccc
Confidence 0000 001247889999999999887655 4556889999999999963 4
Q ss_pred cccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeeccc---cccccccceEecCcccCCCCc
Q 001134 744 IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQS---GKFGKLNKSIQFPEILDLAPY 820 (1145)
Q Consensus 744 ~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~---~~~~KI~~~V~FPe~LDLs~y 820 (1145)
..+++++|..+...|.+.+ |.-. -+....+.+++.+.+||.+|++||+||.+ +...|+.+.+++|-.+.+..-
T Consensus 264 i~sv~~ales~~~re~lp~---~st~-s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~~~~~l~i~~~ 339 (420)
T KOG1871|consen 264 IHSVQDALESLVARESLPG---YSTK-SGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIEYPWTLKISKN 339 (420)
T ss_pred cCCHHHHhhccChhhcccc---eecC-CCCeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhhccceeeechh
Confidence 6799999999999999986 4443 66777888999999999999999999975 456899999999988877654
Q ss_pred cCC------CCCCCCceEEEEEEEEeecCCCCCCceEEEEEEcC-CCcEEEEcCCcceeecccccCC----CCcEEEEEE
Q 001134 821 MSG------TSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKST-QNKWFKVDDSTVTAVERERVLT----EGAYMLLYA 889 (1145)
Q Consensus 821 ~~~------~s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~-~gkWy~fNDs~Vt~Vs~eeVls----~~AYILFYe 889 (1145)
+-. .......|+|.+||.|.|+ ++..|||..-+.+. -+.|+++||..|..+..++|.+ .+||+|+|+
T Consensus 340 ~~s~gvk~~~~~~~~~yks~~vvyhtgt--satvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~t~~r~~yllyY~ 417 (420)
T KOG1871|consen 340 CFSQGLKIRILIATRPYKSLAVVYHTGT--SATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEKVTGSRTPYLLYYI 417 (420)
T ss_pred hhccccchhhhccccccceEEEEEeccc--ccccCceEEeeeecccCceeEeccceeeeccHhhhccccCccchheeEee
Confidence 321 1223467999999999997 89999999999875 5689999999999999999975 579999998
Q ss_pred Ee
Q 001134 890 RC 891 (1145)
Q Consensus 890 R~ 891 (1145)
|.
T Consensus 418 ~~ 419 (420)
T KOG1871|consen 418 EA 419 (420)
T ss_pred ec
Confidence 75
No 39
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.74 E-value=1.1e-17 Score=200.60 Aligned_cols=297 Identities=19% Similarity=0.308 Sum_probs=206.0
Q ss_pred ccCccccccCCCccchHHHHHHHhCChhHHHHHhhcccccccccccchHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHhh
Q 001134 582 ELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDG-KSPLSPIGILSRLQSI 660 (1145)
Q Consensus 582 el~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~~~~~cll~qL~kLf~~l~s~-k~~isP~~fl~~L~~i 660 (1145)
.+.+.||.-.+-+-|-|++||+|+++|++|..++.+ .+.+..|++|+|..||.+|... ...+...+|+.+++.+
T Consensus 496 qT~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H-----~C~~e~CL~CELGFLF~Ml~~S~G~~Cqa~NFlraf~t~ 570 (1118)
T KOG1275|consen 496 QTTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRH-----ICTKEFCLLCELGFLFTMLDSSTGDPCQANNFLRAFRTN 570 (1118)
T ss_pred cceeeccCCCCchHHHHHHHHHHHhccHHHHHHHcC-----ccchhHHHHHHHHHHHHHHhhhcCCccchhHHHHHHhhC
Confidence 446799999999999999999999999999998876 2367889999999999998754 4577778888888665
Q ss_pred ccccCCC---c-------------cccHHHHHHHHHHhhhh--hhhhh---hcCCCCCCCCccccccccccceEEeEEEE
Q 001134 661 GSQLGNG---R-------------EEDAHEFLRYAIDTMQS--VCIEE---AGVNASGPLEDETTLIGLTFGGYLRSKIK 719 (1145)
Q Consensus 661 ~~~F~~g---~-------------QQDA~EFL~~LLD~L~~--e~lk~---~~~~~~~~~~~e~siI~~lF~G~l~s~ik 719 (1145)
...-..| . -|||.-|.......... .+... .........-.....+.+.|+..++....
T Consensus 571 ~~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d~~~~~~~~~s~~~~~~~~~vn~~~~l~q~F~~~~e~~~~ 650 (1118)
T KOG1275|consen 571 PEASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLDCQDCRGLQQSESVDGESFKVNYAPVLQQSFCQEIEKSLR 650 (1118)
T ss_pred hHhhhhcccccchhhccccchHHHhhhhhhccchhhhhhhhHHHhhhhhhhhcccCceeeecchhHHHHHhhhHHHHhhh
Confidence 4321111 1 12332222211111100 00000 00000000112345788999999999999
Q ss_pred EcCCCCeeeeeeeeeeeeeeeecc--------cccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEE
Q 001134 720 CTKCHGKSERQERMMDLTVEIEGD--------IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILT 791 (1145)
Q Consensus 720 C~~C~~~S~~~E~f~~LsL~Ip~~--------~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLi 791 (1145)
|..|+..+.+......+.+..++. ...+.+.|.+-.. +...-.-.|+.|.+.+....+..+..+|.+|.
T Consensus 651 Cg~C~~~~~~~k~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~---l~kn~~~~C~~C~k~ep~~q~~~vr~LPd~L~ 727 (1118)
T KOG1275|consen 651 CGECGDEKQKSKSLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLS---LFKNKQAWCETCTKPEPTSQKKNVRSLPDCLS 727 (1118)
T ss_pred cccccchhhhhhhhhheeecCCCccchhhcccccchHHHhhhhhh---cccccccccccccCCCCcccccccccCcceee
Confidence 999999988777666666665532 1234444443322 22222368999999999999999999999999
Q ss_pred Eeeeecccc------ccccccceEecCcccCCCCccCC------------------CCCCCCceEEEEEEEEeecCCCCC
Q 001134 792 IALKRFQSG------KFGKLNKSIQFPEILDLAPYMSG------------------TSDKLPIYRLYGVVVHLDIMNAAF 847 (1145)
Q Consensus 792 I~LkRF~~~------~~~KI~~~V~FPe~LDLs~y~~~------------------~s~~s~~YeL~gVIvH~Gt~nsa~ 847 (1145)
|...-+..+ +..|....|.+|+.+.|..-... +.....+|+|.|+|+|+|. +-+
T Consensus 728 in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k~~~~~v~~~s~~~~~~~~~~d~~~~~vYeL~a~V~~I~d--~~~ 805 (1118)
T KOG1275|consen 728 INTCLNVHELVDFWARQNKLLEDVWLPEWFHMIISKNKAQLVSTISDLDVSPLPDYDEPSAVVYELDAMVHAIGD--NEN 805 (1118)
T ss_pred eeeeccchhhhhhHHHhhccccccccchheeEEEecccceeeeeeccccCCCCccccCCceEEEEeeeEEEEecc--CCC
Confidence 999887542 22477788899988877642210 1222368999999999994 668
Q ss_pred CceEEEEEEcC---------CCcEEEEcCCcceeecccccCC-----CCcEEEEE
Q 001134 848 SGHYVCYVKST---------QNKWFKVDDSTVTAVERERVLT-----EGAYMLLY 888 (1145)
Q Consensus 848 sGHYVAyVR~~---------~gkWy~fNDs~Vt~Vs~eeVls-----~~AYILFY 888 (1145)
.+|+|++||.. +.+||+|||..|.++++++++. +.+-||+|
T Consensus 806 e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 806 EVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDGPWKVPAILYY 860 (1118)
T ss_pred ccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEeccCccCcEEEEE
Confidence 89999999952 3699999999999999998864 67999999
No 40
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....
Probab=98.75 E-value=3.9e-09 Score=83.21 Aligned_cols=37 Identities=57% Similarity=1.200 Sum_probs=33.6
Q ss_pred CCCCCCCccccccCCCcceecCHHHHHHhhhhhhcccC
Q 001134 75 CAVCFSPTTTRCARCKAVRYCSGKCQIVHWRQGHKDEC 112 (1145)
Q Consensus 75 C~~Cg~~~~~~Cs~Ck~v~YCS~~CQ~~dW~~~HK~~C 112 (1145)
|.+|++++.++|++|+.++|||++||++||. .||.+|
T Consensus 1 C~~C~~~~~~~C~~C~~~~YCs~~Cq~~~w~-~Hk~~C 37 (37)
T PF01753_consen 1 CAVCGKPALKRCSRCKSVYYCSEECQRADWP-YHKFEC 37 (37)
T ss_dssp -TTTSSCSSEEETTTSSSEESSHHHHHHHHH-HHCCTH
T ss_pred CcCCCCCcCCcCCCCCCEEecCHHHHHHHHH-HHhhhC
Confidence 7899999989999999999999999999995 599886
No 41
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=98.42 E-value=5.5e-08 Score=106.33 Aligned_cols=46 Identities=39% Similarity=0.896 Sum_probs=39.9
Q ss_pred cCCCCCCCCCCCC-ccccccCCCcceecCHHHHHHhhhhhhcccCCCC
Q 001134 69 VPQHPQCAVCFSP-TTTRCARCKAVRYCSGKCQIVHWRQGHKDECQPP 115 (1145)
Q Consensus 69 ~~~~~~C~~Cg~~-~~~~Cs~Ck~v~YCS~~CQ~~dW~~~HK~~C~~~ 115 (1145)
......|..||.+ +.+||++||.+.||+++||+.||.. ||++|.-.
T Consensus 316 ~~d~~fCstCG~~ga~KrCs~CKav~YCdqeCQk~hWf~-HKK~C~~L 362 (396)
T KOG1710|consen 316 AADCQFCSTCGHPGAKKRCSQCKAVAYCDQECQKFHWFI-HKKVCSFL 362 (396)
T ss_pred EEecccccccCCCCccchhhhhHHHHHHHHHHHHhhhHH-HHHHHHHH
Confidence 4447789999955 5599999999999999999999966 99999755
No 42
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=98.19 E-value=3.8e-06 Score=91.48 Aligned_cols=131 Identities=18% Similarity=0.399 Sum_probs=85.8
Q ss_pred ccccccccccceEEeEEEEEcCCCCeeeee-----eeeeeeeeeeecccccHHHHHHHhccccccCCCCccccCCCCCcc
Q 001134 701 DETTLIGLTFGGYLRSKIKCTKCHGKSERQ-----ERMMDLTVEIEGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYE 775 (1145)
Q Consensus 701 ~e~siI~~lF~G~l~s~ikC~~C~~~S~~~-----E~f~~LsL~Ip~~~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~ 775 (1145)
.....++++|...+.=...|..||+..... -.|..+ +| .|- .+..-.--.|.+|+.+.
T Consensus 118 k~d~~~E~lF~~sf~WeFeC~~Cg~~~~~R~~K~L~TFtnv---~p-----------dwh---PLnA~h~~pCn~C~~ks 180 (275)
T PF15499_consen 118 KLDPWIEKLFLYSFSWEFECSQCGHKYQNRCTKTLVTFTNV---IP-----------DWH---PLNAVHFGPCNSCNSKS 180 (275)
T ss_pred hcchHHHhHhheeeEEEEEccccCChhhhhheeeecccCCC---CC-----------CCC---cccccccCCCcccCChH
Confidence 345678999999999999999999874321 112211 11 111 11221225699998654
Q ss_pred eEEEEEEEeeCCceEEEeeeeccccccccccceEecCcccCCCCccCCCCCCCCceEEEEEEEEeecCCCCCCceEEEEE
Q 001134 776 KAKKKLTIVEAPNILTIALKRFQSGKFGKLNKSIQFPEILDLAPYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYV 855 (1145)
Q Consensus 776 ~A~K~~~I~~lP~VLiI~LkRF~~~~~~KI~~~V~FPe~LDLs~y~~~~s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyV 855 (1145)
. ++++.+.++|+|+++|+.- | +|.. ||..|.-.= ....|++.+||-+.-. --|+|+|+
T Consensus 181 Q-~rkMvlekv~~vfmLHFVe---G----------LP~n-dl~~ysF~f--eg~~Y~Vt~VIQY~~~-----~~HFvtWi 238 (275)
T PF15499_consen 181 Q-RRKMVLEKVPPVFMLHFVE---G----------LPHN-DLQHYSFHF--EGCLYQVTSVIQYQAN-----LNHFVTWI 238 (275)
T ss_pred H-hHhhhhhcCchhhhhhhhc---c----------CCcc-CCCccceee--cCeeEEEEEEEEEecc-----CceeEEEE
Confidence 4 4568999999999999653 2 2211 222222110 1147999999999652 46999999
Q ss_pred EcCCCcEEEEcCCcc
Q 001134 856 KSTQNKWFKVDDSTV 870 (1145)
Q Consensus 856 R~~~gkWy~fNDs~V 870 (1145)
++.+|.|..+||-+=
T Consensus 239 ~~~dGsWLecDDLkg 253 (275)
T PF15499_consen 239 RDSDGSWLECDDLKG 253 (275)
T ss_pred EcCCCCeEeeccCCC
Confidence 999999999999763
No 43
>KOG2061 consensus Uncharacterized MYND Zn-finger protein [General function prediction only]
Probab=97.49 E-value=4.3e-05 Score=87.27 Aligned_cols=74 Identities=34% Similarity=0.632 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCccccccCCCcceecCHHHHHHhhhhhhcccCCCCCccccccCCCCcccccccCCCcccccccccccCCC
Q 001134 71 QHPQCAVCFSPTTTRCARCKAVRYCSGKCQIVHWRQGHKDECQPPSISHEINDVGNFTSQKAAEPDQSEAYGDRFKFESK 150 (1145)
Q Consensus 71 ~~~~C~~Cg~~~~~~Cs~Ck~v~YCS~~CQ~~dW~~~HK~~C~~~~~~~~~~~~~~~~~~k~~~~~~~~~~e~~~~~e~~ 150 (1145)
....|..||..+.+.|++|+.++|||..+|..||..+|+..|.++....+..+. .-....+
T Consensus 135 ~~~~~~~~~~~a~~~~~~~~~a~~~S~~~q~~d~~~~~~~a~aq~~~~~~~~~~-------------------~p~~~~~ 195 (362)
T KOG2061|consen 135 GADLCGSCGCSAPAACSPCKAAAYCSKKHQSLDWPKGHKDACAQPSTLGEIHDL-------------------GPDHNKV 195 (362)
T ss_pred ccchhccCcccCcccccccchhhhcCchhhcccccccccccccCcccccccccc-------------------CCCCcee
Confidence 357799999999999999999999999999999999999999988876555432 1122338
Q ss_pred CCCcccccCCCCC
Q 001134 151 LPAKPIQMSSEES 163 (1145)
Q Consensus 151 fpE~Eivie~E~~ 163 (1145)
||||.|.+++|..
T Consensus 196 ~pef~i~vd~E~~ 208 (362)
T KOG2061|consen 196 FPEFYIYVDTETF 208 (362)
T ss_pred ceeEEEEEeeccc
Confidence 9999999999864
No 44
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.00084 Score=82.72 Aligned_cols=98 Identities=27% Similarity=0.296 Sum_probs=56.0
Q ss_pred cccCCCccchHHHHHHHhCChhHHHHHhhccccc---cc------c--cccchHHHHHHHHHHHHhcC---C--CCCCHH
Q 001134 588 LINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSK---EC------A--KKDWCFTCELENLILRAKDG---K--SPLSPI 651 (1145)
Q Consensus 588 L~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~---~~------~--~~~~cll~qL~kLf~~l~s~---k--~~isP~ 651 (1145)
|.|.||+||.|++||+|..+|+|+-.+....... .. . +...+-.+.+.......... . ..+.-.
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 113 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKNSSSNESFNLSVT 113 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhccCCccccccchHH
Confidence 9999999999999999999999998765422111 00 0 11111112222211111111 1 111222
Q ss_pred HHHHHHH---hhccccCCCccccHHHHHHHHHHhhhh
Q 001134 652 GILSRLQ---SIGSQLGNGREEDAHEFLRYAIDTMQS 685 (1145)
Q Consensus 652 ~fl~~L~---~i~~~F~~g~QQDA~EFL~~LLD~L~~ 685 (1145)
.+...+. +....|....|+||++|+.-|+-.+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~ 150 (587)
T KOG1864|consen 114 QLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDD 150 (587)
T ss_pred HHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhh
Confidence 3333332 233458889999999999998877654
No 45
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.14 E-value=0.0043 Score=73.92 Aligned_cols=44 Identities=30% Similarity=0.789 Sum_probs=38.6
Q ss_pred CCCCCCCCCCccccccCCCcceecCHHHHHHhhhhhhcccCCCCCcc
Q 001134 72 HPQCAVCFSPTTTRCARCKAVRYCSGKCQIVHWRQGHKDECQPPSIS 118 (1145)
Q Consensus 72 ~~~C~~Cg~~~~~~Cs~Ck~v~YCS~~CQ~~dW~~~HK~~C~~~~~~ 118 (1145)
..=|++|...|...| |-...|||-+||..||+ +|++.|+.....
T Consensus 527 KQWC~nC~~EAiy~C--CWNTSYCsveCQQ~HW~-~H~ksCrrk~~~ 570 (588)
T KOG3612|consen 527 KQWCYNCLDEAIYHC--CWNTSYCSVECQQGHWP-EHRKSCRRKKTN 570 (588)
T ss_pred HHHHHhhhHHHHHHh--hccccccCcchhhccch-hHhhhhcccCCC
Confidence 344999999999999 99999999999999997 599999876654
No 46
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.0042 Score=77.22 Aligned_cols=208 Identities=17% Similarity=0.283 Sum_probs=121.6
Q ss_pred ccccHHHHHHHHHHhhhhhhhhhhc----------CCCCCCCCccccccccccceEEeEEEEEcCCCCeeeeeeeeeeee
Q 001134 668 REEDAHEFLRYAIDTMQSVCIEEAG----------VNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLT 737 (1145)
Q Consensus 668 ~QQDA~EFL~~LLD~L~~e~lk~~~----------~~~~~~~~~e~siI~~lF~G~l~s~ikC~~C~~~S~~~E~f~~Ls 737 (1145)
...++.++|..|+..|+........ ....-......+++..+|+.....+..|..|+.....- ......
T Consensus 548 ~~~~~S~lL~~ll~~l~~~~~~ss~~~~v~~aile~~~~Wk~~er~~l~~~lf~l~~~e~~Sc~~cr~~~n~p-eqsS~~ 626 (806)
T KOG1887|consen 548 HEGVYSELLSDLLLSLEEVHNASSSAADVVVAILEFWQCWKNPERESLVNRLFTLEEKERMSCSKCRRDLNYP-EQSSYG 626 (806)
T ss_pred hhhhHHHHHHHHHhhhHHHhhhcchhhHHHHHHHhcccccccHHHHHHHHhhhhhhhhhhccccccccCCCCc-chhhhh
Confidence 4567788888888888765432210 00011122445778899999999999999997664432 122222
Q ss_pred eeeec----------ccccHHHHHHHhccccccCCCCccccC----CCCCcceEEEEEEEeeCCceEEEeeeeccccccc
Q 001134 738 VEIEG----------DIGNLEEALRRYTGTEILDGENKYKCD----RCKSYEKAKKKLTIVEAPNILTIALKRFQSGKFG 803 (1145)
Q Consensus 738 L~Ip~----------~~~SLed~L~~f~~~E~Ldgdn~y~C~----kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~~~~ 803 (1145)
+.+.. ...++++.|+. ...+. +..|+ .|++. ......|.+.|+|.+|.|.+=....-.
T Consensus 627 ~~~~a~slr~~k~a~~n~~f~~ilk~-i~m~~-----~m~cD~~~gGCgk~--n~v~h~is~~P~vftIvlewEk~ETe~ 698 (806)
T KOG1887|consen 627 IVIAADSLRQLKCAFQNITFEDILKN-IRMND-----KMLCDKETGGCGKA--NLVHHILSPCPPVFTIVLEWEKSETEK 698 (806)
T ss_pred hhccchhhhhHHHHhhhhhHHHHHHH-hhhhh-----hhcccccCCCCcch--hhhhhhcCCCCCeeEeeeehhcccchH
Confidence 22211 11355555554 22222 23343 25432 233467888999999977664322111
Q ss_pred cc-cceEecCcccCCCCccCCCCCCCCceEEEEEEEEeecCCCCCCceEEEEEEcCCCcEE--EEcCCcceee-cccccC
Q 001134 804 KL-NKSIQFPEILDLAPYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQNKWF--KVDDSTVTAV-ERERVL 879 (1145)
Q Consensus 804 KI-~~~V~FPe~LDLs~y~~~~s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~~gkWy--~fNDs~Vt~V-s~eeVl 879 (1145)
-| .+...+..++|+......+.....+|+|+++|.-..- .++|.|+.+. .+.|+ +.+|..+..+ +|.+|.
T Consensus 699 eI~~T~~aL~teidis~~y~~g~ep~t~yrLVSmv~~~e~-----~~~~~C~Aye-~Nrwvs~r~~~~~~e~iG~w~dvv 772 (806)
T KOG1887|consen 699 EISETTKALATEIDISRLYREGLEPNTKYRLVSMVGNHEE-----GEEYICFAYE-PNRWVSLRHEDSQGEVVGDWKDVV 772 (806)
T ss_pred HHHHHHHHHHhhhhHHHHhhhccCcCceeEEEEEeeeccc-----cceEEEeecc-CCcchhhHHHHHHhhhccchHHHH
Confidence 11 1122344566665433233334478999999988741 5899999998 78888 9999888777 555554
Q ss_pred C------CCcEEEEEEE
Q 001134 880 T------EGAYMLLYAR 890 (1145)
Q Consensus 880 s------~~AYILFYeR 890 (1145)
. -.+-||||+.
T Consensus 773 r~c~e~~vrpeil~ye~ 789 (806)
T KOG1887|consen 773 RFCGERKVRPEILFYEA 789 (806)
T ss_pred HHHhcccccHHHHHHHH
Confidence 2 2356666665
No 47
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=94.70 E-value=0.024 Score=67.17 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=21.2
Q ss_pred CccccccCCCccchHHHHHHHhCChhH
Q 001134 584 QPCGLINCGNSCYANVVLQCLAFTPPL 610 (1145)
Q Consensus 584 ~p~GL~NlGNTCYmNSVLQ~L~~iP~F 610 (1145)
...|++-.-|+||+||.|-+++.-...
T Consensus 367 k~kgiqgh~nscyldstlf~~f~f~sv 393 (724)
T KOG3556|consen 367 KIKGIQGHPNSCYLDSTLFKPFEFDSV 393 (724)
T ss_pred ccccccCCcchhhcccccccccccccc
Confidence 346888888999999999988754433
No 48
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=94.29 E-value=0.7 Score=53.54 Aligned_cols=75 Identities=17% Similarity=0.191 Sum_probs=38.8
Q ss_pred cccccCCCccchHHHHHHHhCChh-HHHHHhhcccccccccccchHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcccc
Q 001134 586 CGLINCGNSCYANVVLQCLAFTPP-LTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSIGSQL 664 (1145)
Q Consensus 586 ~GL~NlGNTCYmNSVLQ~L~~iP~-Fr~~LL~~~~~~~~~~~~~cll~qL~kLf~~l~s~k~~isP~~fl~~L~~i~~~F 664 (1145)
+=|.=.-|+||+||++=+|=++.. |+.. .++.++.++..+ .|..|...+.. ...+
T Consensus 103 ~~Lkq~dNNCwVna~~~~LQ~~~~~f~~~-------------------~l~~aw~~f~~G----~~~~fVa~~Ya-~~~~ 158 (320)
T PF08715_consen 103 RVLKQSDNNCWVNAACLQLQALKIKFKSP-------------------GLDEAWNEFKAG----DPAPFVAWCYA-STNA 158 (320)
T ss_dssp EEE---TTTHHHHHHHHHHTTST--BSSH-------------------HHHHHHHHHHTT------HHHHHHHHH-HTT-
T ss_pred EEEEecCCCcHHHHHHHHHHhcCCccCCH-------------------HHHHHHHHHhCC----ChHHHHHHHHH-HcCC
Confidence 335555699999999977754432 2221 122333333322 35566555543 2345
Q ss_pred CCCccccHHHHHHHHHHhhh
Q 001134 665 GNGREEDAHEFLRYAIDTMQ 684 (1145)
Q Consensus 665 ~~g~QQDA~EFL~~LLD~L~ 684 (1145)
..|+-.||+++|..|++.++
T Consensus 159 ~~G~~gDa~~~L~~ll~~~~ 178 (320)
T PF08715_consen 159 KKGDPGDAEYVLSKLLKDAD 178 (320)
T ss_dssp -TTS---HHHHHHHHHTTB-
T ss_pred CCCCCcCHHHHHHHHHHhcc
Confidence 67888999999999998875
No 49
>PLN03158 methionine aminopeptidase; Provisional
Probab=91.74 E-value=0.11 Score=61.80 Aligned_cols=41 Identities=29% Similarity=0.778 Sum_probs=35.2
Q ss_pred CCCCCCCCCCCCccccccCCCc-------ceecCHHHHHHhhhhhhccc
Q 001134 70 PQHPQCAVCFSPTTTRCARCKA-------VRYCSGKCQIVHWRQGHKDE 111 (1145)
Q Consensus 70 ~~~~~C~~Cg~~~~~~Cs~Ck~-------v~YCS~~CQ~~dW~~~HK~~ 111 (1145)
+....|..||+.+...|..|.+ .++||.+|=+..|+. ||..
T Consensus 7 ~~~~~c~~c~~~a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~w~~-Hk~~ 54 (396)
T PLN03158 7 TSPLACARCSKPAHLQCPKCLELKLPREGASFCSQDCFKAAWSS-HKSV 54 (396)
T ss_pred CCcccccCCCCcccccCccchhcCCCCCCceeECHHHHHHHHHH-HHHH
Confidence 4456799999999999999965 689999999999987 8764
No 50
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=82.64 E-value=0.91 Score=39.42 Aligned_cols=42 Identities=21% Similarity=0.510 Sum_probs=35.0
Q ss_pred CCCCCCC----CccccccCCCcceecCHHHHHHhhhhhhcccCCCCC
Q 001134 74 QCAVCFS----PTTTRCARCKAVRYCSGKCQIVHWRQGHKDECQPPS 116 (1145)
Q Consensus 74 ~C~~Cg~----~~~~~Cs~Ck~v~YCS~~CQ~~dW~~~HK~~C~~~~ 116 (1145)
.|.+|+. .....|..|....|||+++=..|.+. |++.|....
T Consensus 1 ~Cpv~~~~~~~~v~~~Cp~cGipthcS~ehw~~D~e~-H~~~c~~LR 46 (55)
T PF13824_consen 1 LCPVCKKDLPAHVNFECPDCGIPTHCSEEHWEDDYEE-HRQLCERLR 46 (55)
T ss_pred CCCCCccccccccCCcCCCCCCcCccCHHHHHHhHHH-HHHHHHHHH
Confidence 4888887 66689999999999999998888755 999886443
No 51
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=80.81 E-value=0.91 Score=34.69 Aligned_cols=28 Identities=46% Similarity=0.997 Sum_probs=22.0
Q ss_pred CCCCCCCCCccccccCCCcceecCHHHHH
Q 001134 73 PQCAVCFSPTTTRCARCKAVRYCSGKCQI 101 (1145)
Q Consensus 73 ~~C~~Cg~~~~~~Cs~Ck~v~YCS~~CQ~ 101 (1145)
..|.+||..+..+|.+|... |||.+|-+
T Consensus 3 ~~C~vC~~~~kY~Cp~C~~~-~CSl~C~k 30 (30)
T PF04438_consen 3 KLCSVCGNPAKYRCPRCGAR-YCSLACYK 30 (30)
T ss_dssp EEETSSSSEESEE-TTT--E-ESSHHHHH
T ss_pred CCCccCcCCCEEECCCcCCc-eeCcEeEC
Confidence 46999999999999999986 99999964
No 52
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=80.39 E-value=0.73 Score=48.95 Aligned_cols=48 Identities=13% Similarity=0.275 Sum_probs=32.9
Q ss_pred EEEEEEEeecCCCCCCceEEEEEEcCCCcEEEEcCCcceeecccccCCCCcEEEEEEEeC
Q 001134 833 LYGVVVHLDIMNAAFSGHYVCYVKSTQNKWFKVDDSTVTAVERERVLTEGAYMLLYARCS 892 (1145)
Q Consensus 833 L~gVIvH~Gt~nsa~sGHYVAyVR~~~gkWy~fNDs~Vt~Vs~eeVls~~AYILFYeR~s 892 (1145)
..+.|.-.| .||.+.+.+. .+.||.|||+.+.+..+.- +-+|.|..-+
T Consensus 129 f~agi~~~g------~~Havfa~~t-s~gWy~iDDe~~y~~tPdp-----~~VLvfvp~D 176 (193)
T PF05408_consen 129 FHAGIFLKG------QEHAVFACVT-SDGWYAIDDEDFYPWTPDP-----SDVLVFVPYD 176 (193)
T ss_dssp EEEEEEEES------TTEEEEEEEE-TTCEEEEETTEEEE----G-----GGEEEEEESS
T ss_pred hhhHheecC------CcceEEEEEe-eCcEEEecCCeeeeCCCCh-----hheEEEcccC
Confidence 455566666 4999999997 7889999999998885432 2346676654
No 53
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=72.17 E-value=2.3 Score=43.58 Aligned_cols=35 Identities=34% Similarity=0.751 Sum_probs=30.2
Q ss_pred cCCCCCCCCCCCCccccccCCCcceecCHHHHHHhh
Q 001134 69 VPQHPQCAVCFSPTTTRCARCKAVRYCSGKCQIVHW 104 (1145)
Q Consensus 69 ~~~~~~C~~Cg~~~~~~Cs~Ck~v~YCS~~CQ~~dW 104 (1145)
.|.-..|++||-.....|-.|.. +|||..|-..|-
T Consensus 115 KP~r~fCaVCG~~S~ysC~~CG~-kyCsv~C~~~Hn 149 (156)
T KOG3362|consen 115 KPLRKFCAVCGYDSKYSCVNCGT-KYCSVRCLKTHN 149 (156)
T ss_pred CCcchhhhhcCCCchhHHHhcCC-ceeechhhhhcc
Confidence 45567899999999999999987 599999998775
No 54
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=55.64 E-value=4.4 Score=33.36 Aligned_cols=30 Identities=43% Similarity=0.937 Sum_probs=24.0
Q ss_pred CCCCCCCCCCcc--ccccCCC-cceecCHHHHH
Q 001134 72 HPQCAVCFSPTT--TRCARCK-AVRYCSGKCQI 101 (1145)
Q Consensus 72 ~~~C~~Cg~~~~--~~Cs~Ck-~v~YCS~~CQ~ 101 (1145)
...|.+||.+.. ++-.+|= .|.|||..|..
T Consensus 8 ~K~C~~C~rpf~WRKKW~~~Wd~VkYCS~rCR~ 40 (42)
T PF10013_consen 8 SKICPVCGRPFTWRKKWARCWDEVKYCSDRCRR 40 (42)
T ss_pred CCcCcccCCcchHHHHHHHhchhhccHHHHhcc
Confidence 567999999887 5566774 78999999964
No 55
>PRK01343 zinc-binding protein; Provisional
Probab=51.65 E-value=12 Score=32.87 Aligned_cols=27 Identities=30% Similarity=0.757 Sum_probs=21.9
Q ss_pred CCCCCCCCCCccccccCCCcceecCHHHHHHh
Q 001134 72 HPQCAVCFSPTTTRCARCKAVRYCSGKCQIVH 103 (1145)
Q Consensus 72 ~~~C~~Cg~~~~~~Cs~Ck~v~YCS~~CQ~~d 103 (1145)
...|..||++... ...-|||+.|+..|
T Consensus 9 ~~~CP~C~k~~~~-----~~rPFCS~RC~~iD 35 (57)
T PRK01343 9 TRPCPECGKPSTR-----EAYPFCSERCRDID 35 (57)
T ss_pred CCcCCCCCCcCcC-----CCCcccCHHHhhhh
Confidence 5679999998763 35579999999988
No 56
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=51.02 E-value=26 Score=37.71 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=16.3
Q ss_pred CccccccCCCccchHHHHHHHhC
Q 001134 584 QPCGLINCGNSCYANVVLQCLAF 606 (1145)
Q Consensus 584 ~p~GL~NlGNTCYmNSVLQ~L~~ 606 (1145)
.++|+.|.+|+||+||++|.+..
T Consensus 32 eft~~PN~~dnCWlNaL~QL~~~ 54 (193)
T PF05408_consen 32 EFTGLPNNHDNCWLNALLQLFRY 54 (193)
T ss_dssp EEE----SSSTHHHHHHHHHHHH
T ss_pred EEecCCCCCCChHHHHHHHHHHH
Confidence 45699999999999999999853
No 57
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=43.45 E-value=19 Score=32.03 Aligned_cols=29 Identities=31% Similarity=0.715 Sum_probs=22.3
Q ss_pred CCCCCCCCCCccccccCCCcceecCHHHHHHhhhh
Q 001134 72 HPQCAVCFSPTTTRCARCKAVRYCSGKCQIVHWRQ 106 (1145)
Q Consensus 72 ~~~C~~Cg~~~~~~Cs~Ck~v~YCS~~CQ~~dW~~ 106 (1145)
...|.+||++-.. .-.|||.+|+..-++.
T Consensus 3 HkHC~~CG~~Ip~------~~~fCS~~C~~~~~k~ 31 (59)
T PF09889_consen 3 HKHCPVCGKPIPP------DESFCSPKCREEYRKR 31 (59)
T ss_pred CCcCCcCCCcCCc------chhhhCHHHHHHHHHH
Confidence 4679999976654 2469999999887755
No 58
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=42.28 E-value=14 Score=38.01 Aligned_cols=38 Identities=29% Similarity=0.956 Sum_probs=28.3
Q ss_pred CCCCCCCCC-ccccccCCCcceecCHHHHHHhhhhhhcc--cCCCCC
Q 001134 73 PQCAVCFSP-TTTRCARCKAVRYCSGKCQIVHWRQGHKD--ECQPPS 116 (1145)
Q Consensus 73 ~~C~~Cg~~-~~~~Cs~Ck~v~YCS~~CQ~~dW~~~HK~--~C~~~~ 116 (1145)
..|..|-+. ...+|..|..- |||-.| ||. ||. .|++..
T Consensus 6 ~tC~ic~e~~~KYKCpkC~vP-YCSl~C----fKi-Hk~tPq~~~ve 46 (157)
T KOG2857|consen 6 TTCVICLESEIKYKCPKCSVP-YCSLPC----FKI-HKSTPQCETVE 46 (157)
T ss_pred eeehhhhcchhhccCCCCCCc-cccchh----hhh-ccCCccccccC
Confidence 357778654 47899999865 999999 766 887 566544
No 59
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=41.83 E-value=15 Score=46.39 Aligned_cols=39 Identities=36% Similarity=0.713 Sum_probs=31.2
Q ss_pred CCCCCCC----CCCccccccCCCc-------ceecCHHHHHHhhhhhhccc
Q 001134 72 HPQCAVC----FSPTTTRCARCKA-------VRYCSGKCQIVHWRQGHKDE 111 (1145)
Q Consensus 72 ~~~C~~C----g~~~~~~Cs~Ck~-------v~YCS~~CQ~~dW~~~HK~~ 111 (1145)
.+.|++| |+++...|..|.+ .++|+.+|=+..|+. ||..
T Consensus 59 ~~~~~~c~~h~~~~a~lqCp~C~k~~~~~~~s~fCsq~CFk~~w~~-Hk~~ 108 (606)
T PLN03144 59 DRKVAVCSVHPSEPATLQCVGCVKAKLPVSKSYHCSPKCFSDAWRH-HRVL 108 (606)
T ss_pred CccceeEeecCCCcccccCccchhcCCCcCcceeeCHHHHHHHHHH-HHHH
Confidence 4457777 5788899998852 578999999999987 8864
No 60
>KOG4317 consensus Predicted Zn-finger protein [Function unknown]
Probab=39.39 E-value=12 Score=42.98 Aligned_cols=36 Identities=39% Similarity=0.948 Sum_probs=27.4
Q ss_pred CCCCCCC-CccccccCCCcceecCHHHHHHhhhhhhcccCCCC
Q 001134 74 QCAVCFS-PTTTRCARCKAVRYCSGKCQIVHWRQGHKDECQPP 115 (1145)
Q Consensus 74 ~C~~Cg~-~~~~~Cs~Ck~v~YCS~~CQ~~dW~~~HK~~C~~~ 115 (1145)
.|..||. +...+|.||..- ||+-.|- +. ||..|.-.
T Consensus 9 ~C~ic~vq~~~YtCPRCn~~-YCsl~CY----r~-h~~~CsE~ 45 (383)
T KOG4317|consen 9 ACGICGVQKREYTCPRCNLL-YCSLKCY----RN-HKHSCSEK 45 (383)
T ss_pred eccccccccccccCCCCCcc-ceeeeee----cC-CCccchHH
Confidence 4888884 455999999875 9999995 44 88778643
No 61
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=35.86 E-value=1.4e+02 Score=28.34 Aligned_cols=50 Identities=24% Similarity=0.286 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCcc
Q 001134 34 AVARKEEIKRLLILASEEAARAEFEASYGYSTTVYVPQHPQCAVCFSPTT 83 (1145)
Q Consensus 34 aia~~ee~k~l~~~a~e~a~~~~~~~~~~~~~~v~~~~~~~C~~Cg~~~~ 83 (1145)
...+..+.+....+...+......++.......+.+.....|+.||++-.
T Consensus 40 ~~~~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~v~i~~~~~C~vC~k~l~ 89 (109)
T PF10367_consen 40 YSNRKRESQIEKNLLKSENLQLKYELVKLRSRSVVITESTKCSVCGKPLG 89 (109)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCceEEECCCCCccCcCCcCC
Confidence 33443444444445555555555666666555566677888999997543
No 62
>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]. Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.
Probab=32.52 E-value=23 Score=29.46 Aligned_cols=31 Identities=23% Similarity=0.510 Sum_probs=21.5
Q ss_pred CCCCCCCCCccccccCCCcceecCHHHHHHhhhh
Q 001134 73 PQCAVCFSPTTTRCARCKAVRYCSGKCQIVHWRQ 106 (1145)
Q Consensus 73 ~~C~~Cg~~~~~~Cs~Ck~v~YCS~~CQ~~dW~~ 106 (1145)
..|..|++.-.. ..-..-|||.+|+.+|+..
T Consensus 7 ~yC~~Cdk~~~~---~~~~~lYCSe~Cr~~D~~~ 37 (43)
T PF12855_consen 7 DYCIVCDKQIDP---PDDGSLYCSEECRLKDQEK 37 (43)
T ss_pred hHHHHhhccccC---CCCCccccCHHHHhHhhhc
Confidence 457778764322 3345569999999999954
No 63
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.67 E-value=6.1 Score=33.40 Aligned_cols=30 Identities=40% Similarity=0.951 Sum_probs=24.7
Q ss_pred CCCCCCCCCCcc--ccccCCC-cceecCHHHHH
Q 001134 72 HPQCAVCFSPTT--TRCARCK-AVRYCSGKCQI 101 (1145)
Q Consensus 72 ~~~C~~Cg~~~~--~~Cs~Ck-~v~YCS~~CQ~ 101 (1145)
...|.+|+.+.. ++-.+|- .|.|||..|..
T Consensus 12 ~KICpvCqRPFsWRkKW~~cWDeVKyCSeRCrr 44 (54)
T COG4338 12 DKICPVCQRPFSWRKKWARCWDEVKYCSERCRR 44 (54)
T ss_pred hhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999887 6678885 78999999983
No 64
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=30.15 E-value=1e+02 Score=34.93 Aligned_cols=38 Identities=18% Similarity=0.509 Sum_probs=31.2
Q ss_pred ccCCCCCCCCCCCCccccccCCCcceecCHHHHHHhhhh
Q 001134 68 YVPQHPQCAVCFSPTTTRCARCKAVRYCSGKCQIVHWRQ 106 (1145)
Q Consensus 68 ~~~~~~~C~~Cg~~~~~~Cs~Ck~v~YCS~~CQ~~dW~~ 106 (1145)
+.....+|..|.+.+...|.|||.- ||.-...++-.+.
T Consensus 167 Le~E~~KC~SCNrlGq~sCLRCK~c-fCddHvrrKg~ky 204 (314)
T PF06524_consen 167 LESETFKCQSCNRLGQYSCLRCKIC-FCDDHVRRKGFKY 204 (314)
T ss_pred hhcccccccccccccchhhhheeee-ehhhhhhhccccc
Confidence 3445788999999999999999986 9998877766654
No 65
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=26.15 E-value=33 Score=26.31 Aligned_cols=23 Identities=39% Similarity=0.910 Sum_probs=13.3
Q ss_pred CCCCCCCCCCc-------cccccCCCccee
Q 001134 72 HPQCAVCFSPT-------TTRCARCKAVRY 94 (1145)
Q Consensus 72 ~~~C~~Cg~~~-------~~~Cs~Ck~v~Y 94 (1145)
...|..||.+. .++|..|....|
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~~~y 32 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGHEHY 32 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-EE-
T ss_pred CcccCcCCccccCCCCcCEeECCCCcCEeC
Confidence 56799999542 388999988766
No 66
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=25.88 E-value=52 Score=29.74 Aligned_cols=35 Identities=20% Similarity=0.527 Sum_probs=27.6
Q ss_pred CccccCCCCCcceEEEEEEEe--eCCceEEEeeeecc
Q 001134 764 NKYKCDRCKSYEKAKKKLTIV--EAPNILTIALKRFQ 798 (1145)
Q Consensus 764 n~y~C~kCk~~~~A~K~~~I~--~lP~VLiI~LkRF~ 798 (1145)
+++.|++|+...-.++..... .+.+++-||.++|-
T Consensus 3 ~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~ 39 (68)
T COG3478 3 NAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFI 39 (68)
T ss_pred ccccCCCcCCcchhhceeeccCCCcceeEEecccEEE
Confidence 456799999877777766654 58899999999984
No 67
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=24.78 E-value=75 Score=36.77 Aligned_cols=43 Identities=23% Similarity=0.613 Sum_probs=34.6
Q ss_pred CCCC--CCCCCCccccccCCC-----cceecCHHHHHHhhhhhhcccCCCC
Q 001134 72 HPQC--AVCFSPTTTRCARCK-----AVRYCSGKCQIVHWRQGHKDECQPP 115 (1145)
Q Consensus 72 ~~~C--~~Cg~~~~~~Cs~Ck-----~v~YCS~~CQ~~dW~~~HK~~C~~~ 115 (1145)
...| ..|++++.+.|..|. ..+.|+.+|-+.-|.. ||..=..+
T Consensus 6 ~~~c~~~~c~~~a~l~Cp~c~~~~i~~~~fc~q~cf~~~w~~-hK~~h~~~ 55 (369)
T KOG2738|consen 6 KISCEGLQCGSEASLQCPTCLKLGIKSAYFCAQECFKNSWLS-HKKLHRKA 55 (369)
T ss_pred hceeeccccCChhhccCchhhhcCCCcccccCchhhhcchhh-hhhhcccc
Confidence 4567 689999999999884 4579999999999977 88765433
No 68
>KOG4215 consensus Hepatocyte nuclear factor 4 and similar steroid hormone receptors [Transcription]
Probab=24.70 E-value=32 Score=40.50 Aligned_cols=37 Identities=24% Similarity=0.494 Sum_probs=26.6
Q ss_pred CCCCCCCCCCcc------ccccCCCcceecCHHHHHHhhhhhhcccCCCC
Q 001134 72 HPQCAVCFSPTT------TRCARCKAVRYCSGKCQIVHWRQGHKDECQPP 115 (1145)
Q Consensus 72 ~~~C~~Cg~~~~------~~Cs~Ck~v~YCS~~CQ~~dW~~~HK~~C~~~ 115 (1145)
...|+.||-+++ ..|-+||-.+ .+.-||. |+..|+=.
T Consensus 19 ~~~CaICGDkaTGKHYGA~SCdGCKGFF------RRSVrk~-~~YtCRF~ 61 (432)
T KOG4215|consen 19 AEFCAICGDKATGKHYGAISCDGCKGFF------RRSVRKN-HQYTCRFN 61 (432)
T ss_pred cchhheeCCcccccccceeecCcchHHH------HHHHHhc-ceeeeecc
Confidence 567999996554 7799999664 3444766 88888643
No 69
>PRK12495 hypothetical protein; Provisional
Probab=23.71 E-value=1e+02 Score=34.27 Aligned_cols=12 Identities=25% Similarity=0.656 Sum_probs=9.0
Q ss_pred CCCCCCCCCCcc
Q 001134 72 HPQCAVCFSPTT 83 (1145)
Q Consensus 72 ~~~C~~Cg~~~~ 83 (1145)
...|..||.+-.
T Consensus 42 a~hC~~CG~PIp 53 (226)
T PRK12495 42 NAHCDECGDPIF 53 (226)
T ss_pred hhhcccccCccc
Confidence 567999996544
No 70
>PF14353 CpXC: CpXC protein
Probab=23.07 E-value=1.1e+02 Score=30.74 Aligned_cols=48 Identities=15% Similarity=0.394 Sum_probs=25.1
Q ss_pred EEEcCCCCeeeeeeeeeeeeeeeecccccHHHHHHHhccccccCCCCccccCCCCCcce
Q 001134 718 IKCTKCHGKSERQERMMDLTVEIEGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEK 776 (1145)
Q Consensus 718 ikC~~C~~~S~~~E~f~~LsL~Ip~~~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~ 776 (1145)
++|..|++..... -+..|..... .++....+..+... +.|++|+....
T Consensus 2 itCP~C~~~~~~~-v~~~I~~~~~------p~l~e~il~g~l~~----~~CP~Cg~~~~ 49 (128)
T PF14353_consen 2 ITCPHCGHEFEFE-VWTSINADED------PELKEKILDGSLFS----FTCPSCGHKFR 49 (128)
T ss_pred cCCCCCCCeeEEE-EEeEEcCcCC------HHHHHHHHcCCcCE----EECCCCCCcee
Confidence 6899998774422 1222222111 12333333333333 99999997654
No 71
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=22.80 E-value=95 Score=32.77 Aligned_cols=34 Identities=18% Similarity=0.490 Sum_probs=26.8
Q ss_pred EEEEEEEEeecCCCCCCceEEEEEEcCCCcEEEEcCCcceee
Q 001134 832 RLYGVVVHLDIMNAAFSGHYVCYVKSTQNKWFKVDDSTVTAV 873 (1145)
Q Consensus 832 eL~gVIvH~Gt~nsa~sGHYVAyVR~~~gkWy~fNDs~Vt~V 873 (1145)
...|+|++.+ .||+|..|- ++.||-+|=..-.+.
T Consensus 98 ~~~gfI~N~~-------~HWf~iRki-~~~wyNLDS~l~~P~ 131 (157)
T PF02099_consen 98 NEFGFICNLS-------RHWFAIRKI-GGQWYNLDSKLKEPE 131 (157)
T ss_dssp CSSEEEEECT-------TEEEEEEEE-TTEEEEECTTTSS-E
T ss_pred hceEEEeccC-------cceEEEEee-CCeeEeccCCCCCCc
Confidence 4679999965 699999887 899999987655443
No 72
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=21.53 E-value=41 Score=40.08 Aligned_cols=39 Identities=23% Similarity=0.215 Sum_probs=32.5
Q ss_pred cccCCcccCccccccCCCccchHHHHHHHhCChhHHHHH
Q 001134 576 YNWNKVELQPCGLINCGNSCYANVVLQCLAFTPPLTAYF 614 (1145)
Q Consensus 576 ~~~~k~el~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~L 614 (1145)
+.....+..|+|++|.||-|++|+..|.+.+..++...+
T Consensus 169 ~~~~n~e~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~ 207 (420)
T KOG1871|consen 169 LVPPNDEFTPRGLINNGNLCNLDSTEEAGLSESSGVQLL 207 (420)
T ss_pred hcCCcccccccccccccccccccchhhcccccCchhhhc
Confidence 333445678899999999999999999999999887754
No 73
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=21.14 E-value=46 Score=32.01 Aligned_cols=26 Identities=23% Similarity=0.613 Sum_probs=19.3
Q ss_pred ccCCCCCCCCCCCC-------ccccccCCCcce
Q 001134 68 YVPQHPQCAVCFSP-------TTTRCARCKAVR 93 (1145)
Q Consensus 68 ~~~~~~~C~~Cg~~-------~~~~Cs~Ck~v~ 93 (1145)
+....++|..||-. ...+|.+||.-|
T Consensus 54 Llv~Pa~CkkCGfef~~~~ik~pSRCP~CKSE~ 86 (97)
T COG3357 54 LLVRPARCKKCGFEFRDDKIKKPSRCPKCKSEW 86 (97)
T ss_pred EEecChhhcccCccccccccCCcccCCcchhhc
Confidence 44567889999932 247999999864
Done!