Query 001134
Match_columns 1145
No_of_seqs 608 out of 2588
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 12:45:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001134.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001134hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 4.7E-59 1.6E-63 532.4 31.9 310 582-894 5-361 (367)
2 3nhe_A Ubiquitin carboxyl-term 100.0 4.2E-58 1.4E-62 516.7 32.0 311 580-894 4-345 (348)
3 2gfo_A Ubiquitin carboxyl-term 100.0 1.3E-57 4.3E-62 527.8 28.2 309 581-892 58-396 (396)
4 3i3t_A Ubiquitin carboxyl-term 100.0 9.8E-58 3.3E-62 515.1 26.0 306 583-893 1-352 (355)
5 2ayn_A Ubiquitin carboxyl-term 100.0 2E-56 6.9E-61 515.6 24.9 307 582-895 11-397 (404)
6 1nb8_A Ubiquitin carboxyl-term 100.0 5.1E-55 1.7E-59 498.3 27.2 294 581-893 2-316 (353)
7 3ihp_A Ubiquitin carboxyl-term 100.0 7E-55 2.4E-59 546.8 28.6 356 513-892 261-853 (854)
8 3mhs_A Ubiquitin carboxyl-term 100.0 5.7E-55 1.9E-59 515.7 26.0 344 531-892 98-474 (476)
9 1vjv_A Ubiquitin carboxyl-term 100.0 8.1E-55 2.8E-59 505.6 24.5 290 581-892 20-414 (415)
10 2f1z_A Ubiquitin carboxyl-term 100.0 3.3E-52 1.1E-56 498.5 24.6 294 581-893 171-485 (522)
11 2vhf_A Ubiquitin carboxyl-term 99.9 2E-27 6.8E-32 268.5 12.8 222 584-867 8-308 (374)
12 2d8q_A BLU protein, zinc finge 99.0 4.4E-10 1.5E-14 99.7 5.0 48 69-117 12-59 (70)
13 2dj8_A Protein CBFA2T1; zinc f 98.9 7.6E-10 2.6E-14 95.2 4.8 46 70-116 13-58 (60)
14 2od1_A Protein CBFA2T1; zinc f 98.9 7.8E-10 2.7E-14 95.2 4.9 46 70-116 11-56 (60)
15 2odd_A Protein CBFA2T1; MYND z 98.9 7.6E-10 2.6E-14 96.3 4.6 47 70-117 15-61 (64)
16 2jw6_A Deformed epidermal auto 98.8 2.1E-09 7E-14 89.7 4.4 43 72-115 9-51 (52)
17 3qww_A SET and MYND domain-con 97.8 7E-06 2.4E-10 96.4 3.2 45 71-116 48-94 (433)
18 3qwp_A SET and MYND domain-con 97.7 1E-05 3.5E-10 94.7 2.5 46 71-117 46-93 (429)
19 3n71_A Histone lysine methyltr 97.6 2.2E-05 7.5E-10 93.5 2.6 46 71-117 48-95 (490)
20 3mp2_A Non-structural protein 96.7 0.018 6.2E-07 61.0 14.4 179 588-874 16-195 (211)
21 2fe8_A PP1AB, ORF1AB, replicas 95.5 0.17 5.8E-06 56.7 15.1 192 586-875 103-296 (315)
22 2yqq_A Zinc finger HIT domain- 90.9 0.18 6.2E-06 42.7 3.8 40 71-116 11-50 (56)
23 1x4s_A Protein FON, zinc finge 87.4 0.2 6.9E-06 42.8 1.6 30 72-102 11-44 (59)
24 2g45_A Ubiquitin carboxyl-term 85.5 0.29 9.9E-06 48.2 1.9 48 512-562 79-126 (129)
25 1qmy_A Protease, leader protea 59.6 6.1 0.00021 39.3 3.5 37 832-875 108-144 (167)
26 1lv3_A Hypothetical protein YA 48.7 8.4 0.00029 33.8 2.3 32 72-104 9-40 (68)
27 3a43_A HYPD, hydrogenase nicke 29.0 64 0.0022 31.8 5.4 18 713-730 66-83 (139)
28 2yqp_A Probable ATP-dependent 21.4 85 0.0029 26.6 3.8 36 69-105 16-51 (60)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=4.7e-59 Score=532.43 Aligned_cols=310 Identities=27% Similarity=0.460 Sum_probs=268.6
Q ss_pred ccCccccccCCCccchHHHHHHHhCChhHHHHHhhcccccccc-----cccchHHHHHHHHHHHHhcC-CCCCCHHHHHH
Q 001134 582 ELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECA-----KKDWCFTCELENLILRAKDG-KSPLSPIGILS 655 (1145)
Q Consensus 582 el~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~-----~~~~cll~qL~kLf~~l~s~-k~~isP~~fl~ 655 (1145)
..+++||.|+|||||||||||+|+++|+|+++|+...+..... ....+++++|+.|+..|+.+ ...+.|..|+.
T Consensus 5 ~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~~ 84 (367)
T 2y6e_A 5 QPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKT 84 (367)
T ss_dssp CTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHHH
T ss_pred CCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHHHH
Confidence 4578999999999999999999999999999998755433221 22457899999999999875 46899999999
Q ss_pred HHHhhccccCCCccccHHHHHHHHHHhhhhhhhhhhcCCCCCC---C----------------CccccccccccceEEeE
Q 001134 656 RLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGP---L----------------EDETTLIGLTFGGYLRS 716 (1145)
Q Consensus 656 ~L~~i~~~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~---~----------------~~e~siI~~lF~G~l~s 716 (1145)
.++...+.|..++||||||||++|||.|++++........... . ....++|.++|+|++++
T Consensus 85 ~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~s 164 (367)
T 2y6e_A 85 QVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKS 164 (367)
T ss_dssp HHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEEE
T ss_pred HHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEEee
Confidence 9999999999999999999999999999987643221110000 0 01357899999999999
Q ss_pred EEEEcCCCCeeeeeeeeeeeeeeeecc------------------cccHHHHHHHhccccccCCCCccccCCCCCcceEE
Q 001134 717 KIKCTKCHGKSERQERMMDLTVEIEGD------------------IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAK 778 (1145)
Q Consensus 717 ~ikC~~C~~~S~~~E~f~~LsL~Ip~~------------------~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~ 778 (1145)
+++|..|++++.+.|+|++|+|+||.. ..+|++||+.|+..|.++++|+|+|++|++++.+.
T Consensus 165 ~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~~a~ 244 (367)
T 2y6e_A 165 TLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQAT 244 (367)
T ss_dssp EEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEEECCE
T ss_pred eEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCCCCCCCceEE
Confidence 999999999999999999999999743 35899999999999999999999999999999999
Q ss_pred EEEEEeeCCceEEEeeeeccccc--cccccceEecCc-ccCCCCccCCCCCCCCceEEEEEEEEeecCCCCCCceEEEEE
Q 001134 779 KKLTIVEAPNILTIALKRFQSGK--FGKLNKSIQFPE-ILDLAPYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYV 855 (1145)
Q Consensus 779 K~~~I~~lP~VLiI~LkRF~~~~--~~KI~~~V~FPe-~LDLs~y~~~~s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyV 855 (1145)
|+..|.++|+||+|||+||.++. ..|+++.|.||. .|||.+|+.........|+|+|||+|.| +..+|||+||+
T Consensus 245 K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G---~~~~GHY~a~~ 321 (367)
T 2y6e_A 245 KKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYG---AMGVGHYTAYA 321 (367)
T ss_dssp EEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSSCCCEEEEEEEEEEEC---SSSSCEEEEEE
T ss_pred EEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCCCCCceEEEEEEeecCC---CCCCCeeeEEE
Confidence 99999999999999999998754 379999999996 7999999987666678999999999999 47899999999
Q ss_pred EcC-CCcEEEEcCCcceeecccccCCCCcEEEEEEEeCCC
Q 001134 856 KST-QNKWFKVDDSTVTAVERERVLTEGAYMLLYARCSPR 894 (1145)
Q Consensus 856 R~~-~gkWy~fNDs~Vt~Vs~eeVls~~AYILFYeR~s~~ 894 (1145)
|+. +++||+|||+.|+++++++|+...||||||+|++..
T Consensus 322 ~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~~ 361 (367)
T 2y6e_A 322 KNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDE 361 (367)
T ss_dssp ECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC-
T ss_pred EcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCCC
Confidence 986 689999999999999999999999999999998743
No 2
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=4.2e-58 Score=516.70 Aligned_cols=311 Identities=32% Similarity=0.539 Sum_probs=268.6
Q ss_pred CcccCccccccCCCccchHHHHHHHhCChhHHHHHhhcccccccc---cccchHHHHHHHHHHHHhc--CCCCCCHHHHH
Q 001134 580 KVELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECA---KKDWCFTCELENLILRAKD--GKSPLSPIGIL 654 (1145)
Q Consensus 580 k~el~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~---~~~~cll~qL~kLf~~l~s--~k~~isP~~fl 654 (1145)
+...+++||.|+|||||||||||+|+++|+|+++++...+..... ....+++++|+.|+..++. ....++|..|+
T Consensus 4 k~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~~~ 83 (348)
T 3nhe_A 4 KSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFK 83 (348)
T ss_dssp --CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCCTTCEECCHHHH
T ss_pred CCCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHcCCCCCccCHHHHH
Confidence 346688999999999999999999999999999998754433321 3567899999999999983 45789999999
Q ss_pred HHHHhhccccCCCccccHHHHHHHHHHhhhhhhhhhhcCCCCCC-------------------CCccccccccccceEEe
Q 001134 655 SRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGP-------------------LEDETTLIGLTFGGYLR 715 (1145)
Q Consensus 655 ~~L~~i~~~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~-------------------~~~e~siI~~lF~G~l~ 715 (1145)
..+....+.|..++||||+|||.+||+.|++++........... .....++|.++|+|++.
T Consensus 84 ~~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~ 163 (348)
T 3nhe_A 84 TQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLK 163 (348)
T ss_dssp HHHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEEEE
T ss_pred HHHHHhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCccccccceEEE
Confidence 99999999999999999999999999999987643221111000 01235779999999999
Q ss_pred EEEEEcCCCCeeeeeeeeeeeeeeeecc---cccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEE
Q 001134 716 SKIKCTKCHGKSERQERMMDLTVEIEGD---IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTI 792 (1145)
Q Consensus 716 s~ikC~~C~~~S~~~E~f~~LsL~Ip~~---~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI 792 (1145)
++++|..|+..+.+.++|++|+|+|+.. ..+|++||+.|+..|.++++|+|.|++|+..+.+.|+..|.++|+||+|
T Consensus 164 ~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i 243 (348)
T 3nhe_A 164 SSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVL 243 (348)
T ss_dssp EEEEETTTCCEEEEEEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECGGGCCEETTTTEECCEEEEEEEEECCSEEEE
T ss_pred EEEEcCCCCCEeeeeccceEEeeeCCCcccCCCCHHHHHHHhcCceEecCCCceECCCCCCcccEEEEEEeecCCceEEE
Confidence 9999999999999999999999999863 2599999999999999999999999999999999999999999999999
Q ss_pred eeeeccccc--cccccceEecC-cccCCCCccCCCCCCCCceEEEEEEEEeecCCCCCCceEEEEEEcC-CCcEEEEcCC
Q 001134 793 ALKRFQSGK--FGKLNKSIQFP-EILDLAPYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKST-QNKWFKVDDS 868 (1145)
Q Consensus 793 ~LkRF~~~~--~~KI~~~V~FP-e~LDLs~y~~~~s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~-~gkWy~fNDs 868 (1145)
||+||.+.. ..|+.+.|.|| +.|||.+|+..... ...|+|+|||+|.| ++.+|||+||+|.. +++||+|||+
T Consensus 244 ~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~~~~~~~-~~~Y~L~avv~H~G---~~~~GHY~~~~~~~~~~~W~~~nD~ 319 (348)
T 3nhe_A 244 HLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENTN-HAVYNLYAVSNHSG---TTMGGHYTAYCRSPGTGEWHTFNDS 319 (348)
T ss_dssp EECCBCCCSSCCCBCCCCEECCSSCEECGGGBCTTCC-CCEEEEEEEEEEEE---CSSCEEEEEEEECTTTCCEEEEETT
T ss_pred EEEcccccCCceeecCcceeccCCcCCHhhhcCCCCC-CCcEEEEEEEEccC---CCCCcccEEEEccCCCCcEEEEeCC
Confidence 999998643 58999999999 68999999875443 37899999999999 47789999999985 6899999999
Q ss_pred cceeecccccCCCCcEEEEEEEeCCC
Q 001134 869 TVTAVERERVLTEGAYMLLYARCSPR 894 (1145)
Q Consensus 869 ~Vt~Vs~eeVls~~AYILFYeR~s~~ 894 (1145)
.|+++++++|....||||||+|+++.
T Consensus 320 ~V~~v~~~~v~~~~aY~LfY~r~~~~ 345 (348)
T 3nhe_A 320 SVTPMSSSQVRTSDAYLLFYELASPP 345 (348)
T ss_dssp EEEEECGGGTCCTTEEEEEEEECC--
T ss_pred CceECCHHHcCCCCceEEEEEecCCC
Confidence 99999999999999999999998753
No 3
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=1.3e-57 Score=527.81 Aligned_cols=309 Identities=28% Similarity=0.511 Sum_probs=267.2
Q ss_pred cccCccccccCCCccchHHHHHHHhCChhHHHHHhhcccccccc-----cccchHHHHHHHHHHHHhcCC-CCCCHHHHH
Q 001134 581 VELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECA-----KKDWCFTCELENLILRAKDGK-SPLSPIGIL 654 (1145)
Q Consensus 581 ~el~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~-----~~~~cll~qL~kLf~~l~s~k-~~isP~~fl 654 (1145)
...+++||.|+|||||||||||+|+++|+|+++|+...+..... ....++.++|..|+..|+.+. ..++|..|+
T Consensus 58 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f~ 137 (396)
T 2gfo_A 58 SGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFK 137 (396)
T ss_dssp SSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHHH
T ss_pred CCCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCceECHHHHH
Confidence 35678999999999999999999999999999998754322211 123568889999999988653 578999999
Q ss_pred HHHHhhccccCCCccccHHHHHHHHHHhhhhhhhhhhcCCCC-----CCC--------------CccccccccccceEEe
Q 001134 655 SRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNAS-----GPL--------------EDETTLIGLTFGGYLR 715 (1145)
Q Consensus 655 ~~L~~i~~~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~-----~~~--------------~~e~siI~~lF~G~l~ 715 (1145)
..++.+.+.|..++||||+|||.+|||.|++++......... ... ....++|.++|+|+++
T Consensus 138 ~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l~ 217 (396)
T 2gfo_A 138 ITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFK 217 (396)
T ss_dssp HHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHHhhhccCCccchhhCcEEE
Confidence 999999999999999999999999999999876432111000 000 1235789999999999
Q ss_pred EEEEEcCCCCeeeeeeeeeeeeeeeecc-cccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEee
Q 001134 716 SKIKCTKCHGKSERQERMMDLTVEIEGD-IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIAL 794 (1145)
Q Consensus 716 s~ikC~~C~~~S~~~E~f~~LsL~Ip~~-~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~L 794 (1145)
++++|..|+.++.+.|+|++|+|+|+.. ..+|++||+.|+..|.++++|+|.|++|+..+.+.|+..|.++|+||+|||
T Consensus 218 s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vLiihL 297 (396)
T 2gfo_A 218 STVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHL 297 (396)
T ss_dssp EEEEETTTCCEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEECCSEEEEEE
T ss_pred EEEEeCCCCceecccccceeeeecccccccCCHHHHHHHhCCcccccCCcccccCCcccccceEEEEEEecCCcEEEEEe
Confidence 9999999999999999999999999864 469999999999999999999999999999999999999999999999999
Q ss_pred eeccccc--cccccceEecC-cccCCCCccCCCCCCCCceEEEEEEEEeecCCCCCCceEEEEEEcC-CCcEEEEcCCcc
Q 001134 795 KRFQSGK--FGKLNKSIQFP-EILDLAPYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKST-QNKWFKVDDSTV 870 (1145)
Q Consensus 795 kRF~~~~--~~KI~~~V~FP-e~LDLs~y~~~~s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~-~gkWy~fNDs~V 870 (1145)
+||.++. ..|+.+.|.|| +.|||.+|+.........|+|+|||+|.| ++++|||+||+|+. +++||+|||+.|
T Consensus 298 kRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G---~~~~GHY~a~v~~~~~~~W~~fnD~~V 374 (396)
T 2gfo_A 298 KRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYG---GLDGGHYTAYCKNAARQRWFKFDDHEV 374 (396)
T ss_dssp CCEEECSSSEEECCCEEECCSSCBCCGGGBCSCCSSCCCBEEEEEEEEES---CTTTCEEEEEEEETTTTEEEEEETTEE
T ss_pred cceeccCccceecCceEecchhhccccccccCCCCCCceEEEEEEEEecC---CCCCCceEEEEcCCCCCCEEEEeCCCe
Confidence 9998754 37999999999 57999999987655567899999999999 57899999999985 689999999999
Q ss_pred eeecccccCCCCcEEEEEEEeC
Q 001134 871 TAVERERVLTEGAYMLLYARCS 892 (1145)
Q Consensus 871 t~Vs~eeVls~~AYILFYeR~s 892 (1145)
+++++++|....||||||+|++
T Consensus 375 ~~v~~~~v~~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 375 SDISVSSVKSSAAYILFYTSLG 396 (396)
T ss_dssp EECCHHHHSCTTEEEEEEECC-
T ss_pred EECCHHHcCCCCceEEEEEEcC
Confidence 9999999999999999999863
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=9.8e-58 Score=515.06 Aligned_cols=306 Identities=28% Similarity=0.471 Sum_probs=258.5
Q ss_pred cCccccccCCCccchHHHHHHHhCChhHHHHHhhcccccccc--cccchHHHHHHHHHHHHhcCC--CCCCHHHHHHHHH
Q 001134 583 LQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECA--KKDWCFTCELENLILRAKDGK--SPLSPIGILSRLQ 658 (1145)
Q Consensus 583 l~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~--~~~~cll~qL~kLf~~l~s~k--~~isP~~fl~~L~ 658 (1145)
+|++||.|+|||||||||||+|+++|+|+++++......... ....+++++|+.||..|+... ..++|..|+..+.
T Consensus 1 TG~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~l~ 80 (355)
T 3i3t_A 1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQ 80 (355)
T ss_dssp --CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHHHH
T ss_pred CCCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 368999999999999999999999999999998654322211 234579999999999998753 6899999999999
Q ss_pred hhccccCCCccccHHHHHHHHHHhhhhhhhhhhcCCCC--------------------CCC--------------Ccccc
Q 001134 659 SIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNAS--------------------GPL--------------EDETT 704 (1145)
Q Consensus 659 ~i~~~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~--------------------~~~--------------~~e~s 704 (1145)
...+.|..++||||+|||.+||+.|++++......... ... ....+
T Consensus 81 ~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 160 (355)
T 3i3t_A 81 KYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDS 160 (355)
T ss_dssp HHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHCCS
T ss_pred HhChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhccCC
Confidence 99999999999999999999999999876432211000 000 11346
Q ss_pred ccccccceEEeEEEEEcCCCCeeeeeeeeeeeeeeeecc-----cccHHHHHHHhccccccCCCCccccCCCCCcceEEE
Q 001134 705 LIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEGD-----IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKK 779 (1145)
Q Consensus 705 iI~~lF~G~l~s~ikC~~C~~~S~~~E~f~~LsL~Ip~~-----~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K 779 (1145)
+|.++|+|++.+.++|..|+.++.+.++|++|+|+|+.. ..+|++||+.|+..|.++++|+|.|++|+.++.+.|
T Consensus 161 ~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L~~~~~~e~l~~~n~~~C~~C~~~~~a~k 240 (355)
T 3i3t_A 161 KIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTK 240 (355)
T ss_dssp HHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC-------CBHHHHHHHHHCCEEECGGGCCCCSSSCCCCCEEE
T ss_pred cccccccEEEEeeEEeCCCCCCceeeccceeecccCCccccccCccCHHHHHHHhCCccccCCCCCeeCCCCCCccceEE
Confidence 799999999999999999999999999999999999853 359999999999999999999999999999999999
Q ss_pred EEEEeeCCceEEEeeeeccccc--cccccceEecC-cccCCCCccCCCCCCCCceEEEEEEEEeecCCCCCCceEEEEEE
Q 001134 780 KLTIVEAPNILTIALKRFQSGK--FGKLNKSIQFP-EILDLAPYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVK 856 (1145)
Q Consensus 780 ~~~I~~lP~VLiI~LkRF~~~~--~~KI~~~V~FP-e~LDLs~y~~~~s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR 856 (1145)
+..|.++|+||+|||+||.+.. ..|+...|.|| +.|||.+|+.... ....|+|+|||+|.| ++.+|||+||+|
T Consensus 241 ~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~~~~~-~~~~Y~L~avv~H~G---~~~~GHY~~~~~ 316 (355)
T 3i3t_A 241 KLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKA-GSPVYQLYALCNHSG---SVHYGHYTALCR 316 (355)
T ss_dssp EEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGBC-----CCEEEEEEEEEEEE---ETTEEEEEEEEE
T ss_pred EEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchhhccCCC-CCcceEEEEEEEecC---CCCCCeEEEEEE
Confidence 9999999999999999998643 47999999999 6799999986543 347899999999999 578999999999
Q ss_pred cCCCcEEEEcCCcceeecccccCCCCcEEEEEEEeCC
Q 001134 857 STQNKWFKVDDSTVTAVERERVLTEGAYMLLYARCSP 893 (1145)
Q Consensus 857 ~~~gkWy~fNDs~Vt~Vs~eeVls~~AYILFYeR~s~ 893 (1145)
. .++||+|||+.|+++++++|+...||||||+|++.
T Consensus 317 ~-~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~~ 352 (355)
T 3i3t_A 317 C-QTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQE 352 (355)
T ss_dssp E-TTEEEEEETTEEEEECHHHHHTSCCSEEEEEEC--
T ss_pred c-CCeEEEEcCCCcEECCHHHcCCCCcEEEEEEeccC
Confidence 8 67899999999999999999999999999999864
No 5
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=2e-56 Score=515.63 Aligned_cols=307 Identities=26% Similarity=0.369 Sum_probs=257.0
Q ss_pred ccCccccccCCCccchHHHHHHHhCChhHHHHHhhcccc--ccc-ccccchHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001134 582 ELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHS--KEC-AKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQ 658 (1145)
Q Consensus 582 el~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~--~~~-~~~~~cll~qL~kLf~~l~s~k~~isP~~fl~~L~ 658 (1145)
...++||.|+|||||||||||+|+++|+|+++|+..... ... .....+++++|+.||..|+.....+.|..|+..++
T Consensus 11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~v~P~~~~~~l~ 90 (404)
T 2ayn_A 11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLH 90 (404)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHCSEECCHHHHHHHH
T ss_pred cCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhcCCCcCChHHHHHHHH
Confidence 457899999999999999999999999999999875443 111 13457899999999999998778999999999999
Q ss_pred hhccccC------CCccccHHHHHHHHHHhhhhhhhhhhcCCCC---------CCCCccccccccccceEEeEEEEEcCC
Q 001134 659 SIGSQLG------NGREEDAHEFLRYAIDTMQSVCIEEAGVNAS---------GPLEDETTLIGLTFGGYLRSKIKCTKC 723 (1145)
Q Consensus 659 ~i~~~F~------~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~---------~~~~~e~siI~~lF~G~l~s~ikC~~C 723 (1145)
...+.|. .+.||||+|||.+||+.|++++......... .......++|.++|+|++.++++|..|
T Consensus 91 ~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~i~~~F~G~l~s~i~C~~C 170 (404)
T 2ayn_A 91 MAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTES 170 (404)
T ss_dssp HHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEEEEESSS
T ss_pred HhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcccccchhhhhhhhccccCchhhhhccEEEEEEEEecCC
Confidence 9999887 4899999999999999999876432110000 001234578999999999999999999
Q ss_pred CCee--eeeeeeeeeeeeeecccccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeecccc-
Q 001134 724 HGKS--ERQERMMDLTVEIEGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSG- 800 (1145)
Q Consensus 724 ~~~S--~~~E~f~~LsL~Ip~~~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~- 800 (1145)
+.++ .+.|+|++|+|+|++...+|+++|+.|+. |.++ |.|++|+....+.|+..|.++|+||+|||+||.+.
T Consensus 171 ~~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~-e~l~----~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~ 245 (404)
T 2ayn_A 171 EEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQ-EEIT----KQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKE 245 (404)
T ss_dssp CCCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTE-ECCC----CEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCC
T ss_pred CCccCceeeccCceEEeecCCCcccHHHHHHHhcc-ccee----ecchhhCCccceeeeeeHhhCCCceEEEEEEEEEec
Confidence 9994 79999999999999877899999999987 4444 89999999999999999999999999999999864
Q ss_pred ---ccccccceEecCcccCCCCccCCC-------------------------------------------------CCCC
Q 001134 801 ---KFGKLNKSIQFPEILDLAPYMSGT-------------------------------------------------SDKL 828 (1145)
Q Consensus 801 ---~~~KI~~~V~FPe~LDLs~y~~~~-------------------------------------------------s~~s 828 (1145)
...|+++.|.||..|||.+|+... ....
T Consensus 246 ~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 325 (404)
T 2ayn_A 246 KESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNC 325 (404)
T ss_dssp SSSSCCBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC----------------------CCCCCSCTTTTCCC
T ss_pred ccCceeccCceeccCceeEHhHhcChhhhhhcchhhhHHhhhhcccchhhhhhccccccccccccccccccccccCcCCC
Confidence 348999999999999999987531 1234
Q ss_pred CceEEEEEEEEeecCCCCCCceEEEEEEcCCCcEEEEcCCcceeecccccCCCC-------cEEEEEEEeCCCC
Q 001134 829 PIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQNKWFKVDDSTVTAVERERVLTEG-------AYMLLYARCSPRA 895 (1145)
Q Consensus 829 ~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~~gkWy~fNDs~Vt~Vs~eeVls~~-------AYILFYeR~s~~~ 895 (1145)
..|+|+|||+|.|. ++.+|||+||||..+++||+|||+.|+++++++|+... ||||||+|+....
T Consensus 326 ~~Y~L~avv~H~G~--s~~~GHY~a~v~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~~~~ 397 (404)
T 2ayn_A 326 GYYDLQAVLTHQGR--SSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPRRVEI 397 (404)
T ss_dssp SEEEEEEEEEEESS--STTSSEEEEEEEEETTEEEEEBTTBCCCBCHHHHGGGGSSSSSCEEEEEEEECC----
T ss_pred ceEEEEEEEEecCC--CCCCCCeEEEEECCCCeEEEeecccceecCHHHHHhhhCCCCCceEEEEEEEecCCCC
Confidence 78999999999994 58899999999987899999999999999999998655 9999999987543
No 6
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=5.1e-55 Score=498.31 Aligned_cols=294 Identities=28% Similarity=0.432 Sum_probs=254.5
Q ss_pred cccCccccccCCCccchHHHHHHHhCChhHHHHHhhcccccccccccchHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 001134 581 VELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSI 660 (1145)
Q Consensus 581 ~el~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~~~~~cll~qL~kLf~~l~s~k~~isP~~fl~~L~~i 660 (1145)
...+++||.|+|||||||||||+|+++|+|+++++..... ......++.++|+.||..|+....++.|..|+..+.
T Consensus 2 ~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~--~~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~-- 77 (353)
T 1nb8_A 2 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE--GDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFG-- 77 (353)
T ss_dssp CCSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCT--TSCTTTCHHHHHHHHHHHHHHCSSCBCCHHHHHHHT--
T ss_pred CCCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCC--CCcccccHHHHHHHHHHHHhhcCCCCCCHHHHhhcC--
Confidence 3568999999999999999999999999999998754321 112345789999999999998878899999887764
Q ss_pred ccccCCCccccHHHHHHHHHHhhhhhhhhhhcCCCCCCCCccccccccccceEEeEEEEEcCCCCeeeeeeeeeeeeeee
Q 001134 661 GSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEI 740 (1145)
Q Consensus 661 ~~~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~~~~e~siI~~lF~G~l~s~ikC~~C~~~S~~~E~f~~LsL~I 740 (1145)
.+.|..+.||||+|||.+||+.|++++... ...++|.++|+|++.++++|..|+..+.+.++|++|+|+|
T Consensus 78 ~~~~~~~~QqDA~EFl~~LLd~L~~~~~~~----------~~~s~i~~~F~g~~~~~i~C~~C~~~s~~~e~f~~LsL~i 147 (353)
T 1nb8_A 78 WETLDSFMQHDVQELCRVLLDNVENKMKGT----------CVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSI 147 (353)
T ss_dssp CCBTTTTTTSCHHHHHHHHHHHHHHHTTTS----------TTTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESCEEECC
T ss_pred CCCCCcccchhHHHHHHHHHHHHHHHhcCC----------CccchhhhhceeEEEEEEEeccCCCeeceeeeeEEEEEEE
Confidence 467889999999999999999999865321 2346899999999999999999999999999999999999
Q ss_pred ecccccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeecccc----ccccccceEecCcccC
Q 001134 741 EGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSG----KFGKLNKSIQFPEILD 816 (1145)
Q Consensus 741 p~~~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~----~~~KI~~~V~FPe~LD 816 (1145)
++ ..+|.++|..|+..|.++++++|.|++|+ .+.+.|+..|.++|+||+|||+||.++ ...|+++.|.||+.||
T Consensus 148 ~~-~~~l~~~L~~~~~~E~l~~~~~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ld 225 (353)
T 1nb8_A 148 KG-KKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLP 225 (353)
T ss_dssp TT-CSBHHHHHHHHTCCEEECTTTCEECGGGC-EECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEE
T ss_pred CC-CcchHHHHHHhhCccccCCCccccCCcCc-cEeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCCeee
Confidence 86 47899999999999999999999999996 678999999999999999999999864 3479999999999999
Q ss_pred CCCccCCCC-CCCCceEEEEEEEEeecCCCCCCceEEEEEEc-CCCcEEEEcCCcceeecccccCC--------------
Q 001134 817 LAPYMSGTS-DKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKS-TQNKWFKVDDSTVTAVERERVLT-------------- 880 (1145)
Q Consensus 817 Ls~y~~~~s-~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~-~~gkWy~fNDs~Vt~Vs~eeVls-------------- 880 (1145)
|.+|+.... .....|+|+|||+|.| .+.+|||+||+|+ .+++||+|||+.|+++++++|+.
T Consensus 226 l~~~~~~~~~~~~~~Y~L~avv~H~G---~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~ 302 (353)
T 1nb8_A 226 LDEFLQKTDPKDPANYILHAVLVHSG---DNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRH 302 (353)
T ss_dssp CGGGBSSCCTTSCCEEEEEEEEEEES---STTCCCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC-------C
T ss_pred hhhhhcccCCCCCceEEEEEEEEEeC---CCCCcEEEEEEecCCCCCEEEEECcceEECCHHHHHHHhcCCCccccccCc
Confidence 999987543 3347899999999999 4689999999996 47899999999999999988863
Q ss_pred -CCcEEEEEEEeCC
Q 001134 881 -EGAYMLLYARCSP 893 (1145)
Q Consensus 881 -~~AYILFYeR~s~ 893 (1145)
..||||||+|.+.
T Consensus 303 ~~~aYiLfY~r~~~ 316 (353)
T 1nb8_A 303 CTNAYMLVYIRESK 316 (353)
T ss_dssp CEEEEEEEEEETTT
T ss_pred CCeEEEEEEEECch
Confidence 5799999999874
No 7
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=7e-55 Score=546.79 Aligned_cols=356 Identities=21% Similarity=0.318 Sum_probs=288.0
Q ss_pred ccceeeecccCCCCCCCccchhhhhhccccCCcccccccccCccccCccc-CCcCcchh--hhhhh-----cccCC----
Q 001134 513 SAMSAQIENSPSNVGNGLKTSLWKAVDQFRGSKSSKQCLSVGCETAGRYS-DKGLFSYE--LFVKL-----YNWNK---- 580 (1145)
Q Consensus 513 ~af~~ql~e~~~~g~~dLk~~~lk~~d~v~dp~LskhL~~~Gi~I~~~~k-eksLf~~E--~~lkl-----~~~~k---- 580 (1145)
..+.++|+.+++.+ .++| ++.+++.+.+|.|..|+.++|+++....+ ++++.+++ .+.++ +...+
T Consensus 261 H~~~~~l~t~~~~~-~~~~--cy~~~~~v~~~~l~~~l~~~gi~~~~~~kt~k~~~el~~~~n~~~g~~~~~~~~g~~l~ 337 (854)
T 3ihp_A 261 YPLAVKLGTITPDG-ADVY--SYDEDDMVLDPSLAEHLSHFGIDMLKMQKTDKTMTELEIDMNQRIGEWELIQESGVPLK 337 (854)
T ss_dssp CCEEEETTCCBTTB-CCEE--ETTTTEECBCTTHHHHHHHTTCCC-----------------------------------
T ss_pred CcEEEEcCCcCCCC-CeEE--EccCCCeeeCccHHHHHHHhCcccccccccchhhhhhhhhhccccchhhhhcccCcccc
Confidence 45788888888776 5555 56789999999999999999999988765 77766543 23322 11111
Q ss_pred --cccCccccccCCCccchHHHHHHHhCChhHHHHHhhccccc---ccccccchHHHHHHHHHHHHhcC-----------
Q 001134 581 --VELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSK---ECAKKDWCFTCELENLILRAKDG----------- 644 (1145)
Q Consensus 581 --~el~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~---~~~~~~~cll~qL~kLf~~l~s~----------- 644 (1145)
...+++||.|+|||||||||||+|+++|+|+++|+...+.. .......++.++|++||..|+..
T Consensus 338 p~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~ 417 (854)
T 3ihp_A 338 PLFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGD 417 (854)
T ss_dssp CCCSTTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC----------
T ss_pred cccCCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhccccccccccccc
Confidence 23467999999999999999999999999999998543221 22246678999999999988753
Q ss_pred ----------CCCCCHHHHHHHHHhhccccCCCccccHHHHHHHHHHhhhhhhhhhhcCCCCCCCCccccccccccceEE
Q 001134 645 ----------KSPLSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYL 714 (1145)
Q Consensus 645 ----------k~~isP~~fl~~L~~i~~~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~~~~e~siI~~lF~G~l 714 (1145)
+..+.|..|+..++...+.|..++||||+|||.+||+.|++++. ..++|.++|+|++
T Consensus 418 ~~~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~-------------~~s~i~~lF~G~l 484 (854)
T 3ihp_A 418 GERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCR-------------SSENPNEVFRFLV 484 (854)
T ss_dssp -----------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCT-------------TSCCGGGGTCEEE
T ss_pred cccccccccCCCccChHHHHHHHhhhccccccccccCHHHHHHHHHHHHHHHhc-------------ccCCchhhcCceE
Confidence 35889999999999999999999999999999999999998652 1346899999999
Q ss_pred eEEEEEcCCCCeeeeeeeeeeeeeeeeccc-------------------------------ccHHHHHHHhccccccCCC
Q 001134 715 RSKIKCTKCHGKSERQERMMDLTVEIEGDI-------------------------------GNLEEALRRYTGTEILDGE 763 (1145)
Q Consensus 715 ~s~ikC~~C~~~S~~~E~f~~LsL~Ip~~~-------------------------------~SLed~L~~f~~~E~Ldgd 763 (1145)
+++++|..|+.++.+.++|++|+|+|+... .+|++||+.|+.+|.|++
T Consensus 485 ~s~i~C~~C~~vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~dcL~~f~~~E~Le~- 563 (854)
T 3ihp_A 485 EEKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSSCLEAYGAPEQVDD- 563 (854)
T ss_dssp EEEEEETTTTEEEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHHHHHHHHSCEEEEE-
T ss_pred EEEEEecCCCCEeEEeeeceEEEeeCCccccccccchhhhcccccccccccccccccccCCCCHHHHHHHhcCceEeee-
Confidence 999999999999999999999999998531 499999999999999997
Q ss_pred CccccCCCCCcceEEEEEEEeeCCceEEEeeeecccc---ccccccceEecCcccCCCCccCCCC---------------
Q 001134 764 NKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSG---KFGKLNKSIQFPEILDLAPYMSGTS--------------- 825 (1145)
Q Consensus 764 n~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~---~~~KI~~~V~FPe~LDLs~y~~~~s--------------- 825 (1145)
|+|++|+.++.+.|+..|.+||+||+|||+||.++ ...|+++.|.||+.|||.+|+..+.
T Consensus 564 --y~C~~C~~k~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~FP~~LDl~~y~~~~~q~~E~~lp~~~~~~~ 641 (854)
T 3ihp_A 564 --FWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQPGEEELPDIAPPLV 641 (854)
T ss_dssp --EEETTTTEEEEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEECCCCSEEECGGGBCCCSCTTCCBCCCC-----
T ss_pred --eeccccCCcceeeEEEEeeeCCceEEEEeehheecCCCceEECCeEEecCCcEehHHhccCCCCCCceeccccccccc
Confidence 99999999999999999999999999999999873 3479999999999999999854200
Q ss_pred --------------------------------------------------------------------------------
Q 001134 826 -------------------------------------------------------------------------------- 825 (1145)
Q Consensus 826 -------------------------------------------------------------------------------- 825 (1145)
T Consensus 642 ~~~~~~~~~~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~~~~~~s~~~~~~~~~~ 721 (854)
T 3ihp_A 642 TPDEPKAPMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGPGSTSAAADPPPE 721 (854)
T ss_dssp -----------CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC--------------CCH
T ss_pred ccccccccCcCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccCcccccccccccccccccccccccCCCCH
Confidence
Q ss_pred ----------------------------------------------------------------------CCCCceEEEE
Q 001134 826 ----------------------------------------------------------------------DKLPIYRLYG 835 (1145)
Q Consensus 826 ----------------------------------------------------------------------~~s~~YeL~g 835 (1145)
+....|+|+|
T Consensus 722 e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~a 801 (854)
T 3ihp_A 722 DCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGRSAADSISESVPVGPKVRDGPGKYQLFA 801 (854)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC------------------CCCCCCCSEEEEEE
T ss_pred HHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhcCcccccccccccccccccccccccccccccCCCCCCCceEEEEE
Confidence 0112699999
Q ss_pred EEEEeecCCCCCCceEEEEEEcCCCcEEEEcCCcceeecccccCCCCcEEEEEEEeC
Q 001134 836 VVVHLDIMNAAFSGHYVCYVKSTQNKWFKVDDSTVTAVERERVLTEGAYMLLYARCS 892 (1145)
Q Consensus 836 VIvH~Gt~nsa~sGHYVAyVR~~~gkWy~fNDs~Vt~Vs~eeVls~~AYILFYeR~s 892 (1145)
||+|.|. +.++||||||||+ +++||+|||+.|+.+ +++.+..||||||+|++
T Consensus 802 vi~H~G~--~~~~GHY~~~~~~-~~~W~~~nD~~V~~~--~~~~~~~aYilfY~R~~ 853 (854)
T 3ihp_A 802 FISHMGT--STMCGHYVCHIKK-EGRWVIYNDQKVCAS--EKPPKDLGYIYFYQRVA 853 (854)
T ss_dssp EEEEESS--CSSCCEEEEEEEE-TTEEEEEETTEEEEC--SSCCTTSCSEEEEEECC
T ss_pred EEEeecC--CCCCcCeEEEEEe-CCEEEEEECCeeEEc--cccCCCcceEEEEEecC
Confidence 9999995 7889999999999 799999999999997 46688899999999975
No 8
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=5.7e-55 Score=515.72 Aligned_cols=344 Identities=28% Similarity=0.488 Sum_probs=278.0
Q ss_pred cchhhhhhccccCCccccc--ccccCccccCcccCCcCcchhhhhhhcccCCcccCccccccCCCccchHHHHHHHhCCh
Q 001134 531 KTSLWKAVDQFRGSKSSKQ--CLSVGCETAGRYSDKGLFSYELFVKLYNWNKVELQPCGLINCGNSCYANVVLQCLAFTP 608 (1145)
Q Consensus 531 k~~~lk~~d~v~dp~Lskh--L~~~Gi~I~~~~keksLf~~E~~lkl~~~~k~el~p~GL~NlGNTCYmNSVLQ~L~~iP 608 (1145)
.-+++.+++.+.++.+.++ ++.+...+.. +.. ........+++||.|+|||||||||||+|+++|
T Consensus 98 ~~~c~~~~~~v~d~~l~~~~~~~~~~~~~~~----~~~---------~~~~~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p 164 (476)
T 3mhs_A 98 LLFCFKCEDYIGNIDLINDAILAKYWDDVCT----KTM---------VPSMERRDGLSGLINMGSTCFMSSILQCLIHNP 164 (476)
T ss_dssp CEEETTTTEEECSCHHHHTGGGGGGHHHHHH----HEE---------CCCGGGTTCCCCCCCSSSTHHHHHHHHHHHTCH
T ss_pred cEEeCCCCCCcccHHHHHHHHhhhccchhhh----ccc---------CCCccCCCCCCCCCcCCccHHHHHHHHHHhCCH
Confidence 4568889999999998653 3211111100 000 001123457899999999999999999999999
Q ss_pred hHHHHHhhcccccccc--cccchHHHHHHHHHHHHhcCC----------CCCCHHHHHHHH---HhhccccCCCccccHH
Q 001134 609 PLTAYFLQGLHSKECA--KKDWCFTCELENLILRAKDGK----------SPLSPIGILSRL---QSIGSQLGNGREEDAH 673 (1145)
Q Consensus 609 ~Fr~~LL~~~~~~~~~--~~~~cll~qL~kLf~~l~s~k----------~~isP~~fl~~L---~~i~~~F~~g~QQDA~ 673 (1145)
+|+++++...+...+. .+..|+.++|..++..++... ..+.|..+...+ +...+.|..++||||+
T Consensus 165 ~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~f~~~~QqDA~ 244 (476)
T 3mhs_A 165 YFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAH 244 (476)
T ss_dssp HHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--------CCCSCHHHHHHHHHHHHHCGGGSSSSCEEHH
T ss_pred HHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhhcccccccccccccccCcchHHHHHHHHHHhccccCCCCCcCHH
Confidence 9999998655443332 456789999999999988642 245566555544 4788899999999999
Q ss_pred HHHHHHHHhhhhhhhhhhcCC---CCCCCCccccccccccceEEeEEEEEcCCCCee-eeeeeeeeeeeeeecccccHHH
Q 001134 674 EFLRYAIDTMQSVCIEEAGVN---ASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKS-ERQERMMDLTVEIEGDIGNLEE 749 (1145)
Q Consensus 674 EFL~~LLD~L~~e~lk~~~~~---~~~~~~~e~siI~~lF~G~l~s~ikC~~C~~~S-~~~E~f~~LsL~Ip~~~~SLed 749 (1145)
|||.+||+.|++++....... .........++|.++|+|+++++++|..|+.++ .+.++|++|+|+|++ ..+|++
T Consensus 245 EFl~~LLd~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~G~l~~~~~C~~C~~~s~~~~e~f~~LsL~i~~-~~sl~~ 323 (476)
T 3mhs_A 245 EFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKD-KKKLYE 323 (476)
T ss_dssp HHHHHHHHHHHHHHHHHCCC-------CCCSCCSHHHHHSCEEEEEEEECTTTCCCCEEEEEEESCEEECCTT-CCBHHH
T ss_pred HHHHHHHHHHHHHHhhcccccccccccccccCCCcceeecceEEEEEEEECCCCCeeCCcccchhhhccchhh-hhHHHH
Confidence 999999999998875443211 111223456789999999999999999999996 459999999999985 479999
Q ss_pred HHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeecccc---ccccccceEecCcccCCCCccCCCCC
Q 001134 750 ALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSG---KFGKLNKSIQFPEILDLAPYMSGTSD 826 (1145)
Q Consensus 750 ~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~---~~~KI~~~V~FPe~LDLs~y~~~~s~ 826 (1145)
+|+.|+..|.+++.+ |.|++|+..+.+.|+..|.++|+||+|||+||.+. ...|+.+.|.||+.|||.+|+.....
T Consensus 324 ~L~~~~~~E~l~~~~-~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP~~Ldl~~~~~~~~~ 402 (476)
T 3mhs_A 324 CLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNYCSTKEK 402 (476)
T ss_dssp HHHHHHCCEECSSCC-CEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCCSEEECGGGBSCCBC
T ss_pred HHHHhcChhhccCCC-CcCCccCCcccEEEEEEcccCCcceEEEeeeccccCCCCeEECCEEEcCCCeeechhhcCcccc
Confidence 999999999999755 99999999999999999999999999999999853 35799999999999999999875332
Q ss_pred ---------CCCceEEEEEEEEeecCCCCCCceEEEEEEcCCCcEEEEcCCcceeecccccCCCCcEEEEEEEeC
Q 001134 827 ---------KLPIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQNKWFKVDDSTVTAVERERVLTEGAYMLLYARCS 892 (1145)
Q Consensus 827 ---------~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~~gkWy~fNDs~Vt~Vs~eeVls~~AYILFYeR~s 892 (1145)
....|+|+|||+|.| ++++|||+||+|..+++||+|||+.|+++++++|+...||||||+|+.
T Consensus 403 ~~~~~~~~~~~~~Y~L~avv~H~G---~~~~GHY~a~vr~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 474 (476)
T 3mhs_A 403 DKHSENGKVPDIIYELIGIVSHKG---TVNEGHYIAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQ 474 (476)
T ss_dssp CC--CCCBCCCEEEEEEEEEEEEE---CSSSEEEEEEEECTTSCEEEEETTEEEEECHHHHTTSCEEEEEEEEEE
T ss_pred cccccccCCCCCcEEEEEEEEeCC---CCCCCceEEEEECCCCcEEEEeCCceEECCHHHhccCCcEEEEEEEec
Confidence 346799999999999 578999999999878999999999999999999999999999999975
No 9
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=8.1e-55 Score=505.60 Aligned_cols=290 Identities=23% Similarity=0.337 Sum_probs=246.8
Q ss_pred cccCccccccCCCccchHHHHHHHhCChhHHHHHhhccccccccc-------ccchHHHHHHHHHHHHhcCC-CCCCHHH
Q 001134 581 VELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAK-------KDWCFTCELENLILRAKDGK-SPLSPIG 652 (1145)
Q Consensus 581 ~el~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~~-------~~~cll~qL~kLf~~l~s~k-~~isP~~ 652 (1145)
....|+||.|+|||||||||||+|+++|+||++|+.......... ...+++++|+.||..|+... ..+.|..
T Consensus 20 ~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p~~ 99 (415)
T 1vjv_A 20 FAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPVV 99 (415)
T ss_dssp CCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCHH
T ss_pred cCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCCCCccCHHH
Confidence 355789999999999999999999999999999987544332222 15689999999999999875 8899999
Q ss_pred HHHHHHhhccccC-------CCccccHHHHHHHHHHhhhhhhhhhhcCCCCCCCCccccccccccceEEeEEEEEcCCCC
Q 001134 653 ILSRLQSIGSQLG-------NGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHG 725 (1145)
Q Consensus 653 fl~~L~~i~~~F~-------~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~~~~e~siI~~lF~G~l~s~ikC~~C~~ 725 (1145)
|+..++...+.|. .+.||||+|||.+||+.|++++.. ++|.++|+ ++.++++|..|+.
T Consensus 100 ~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~--------------~~i~~~F~-~~~~~~~C~~C~~ 164 (415)
T 1vjv_A 100 LLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD--------------KFSEDFRI-QFKTTIKDTANDN 164 (415)
T ss_dssp HHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH--------------HHHTTTCE-EEEEEEEETTEEE
T ss_pred HHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc--------------chHHHHHH-hheEEEEECCCCC
Confidence 9999999999998 799999999999999999987632 57899999 9999999999999
Q ss_pred ee--eeeeeeeeeeeeeecccccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeeccccc--
Q 001134 726 KS--ERQERMMDLTVEIEGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSGK-- 801 (1145)
Q Consensus 726 ~S--~~~E~f~~LsL~Ip~~~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~~-- 801 (1145)
++ .+.|+|++|+|+|++...+|+++|..|+.. .++ |.|++|+....+.|+..|.++|+||+|||+||.+..
T Consensus 165 ~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~e-~i~----~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~ 239 (415)
T 1vjv_A 165 DITVKENESDSKLQCHISGTTNFMRNGLLEGLNE-KIE----KRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRST 239 (415)
T ss_dssp EEEEECCCEESCEEECCCTTCCBHHHHHHHHHEE-C-------------CCCCEEEEEEEEECBSEEEEEECCEEEETTT
T ss_pred CccccccccceeeeeccccccchHHHHHHHHhhh-hhh----hcccccCCcccEEEEEEcccCCCeeEEEEEEEEEeCCC
Confidence 86 599999999999998778999999999974 344 899999999999999999999999999999998653
Q ss_pred --cccccceEecCcccCCCCccCCC-------------------------------------------------------
Q 001134 802 --FGKLNKSIQFPEILDLAPYMSGT------------------------------------------------------- 824 (1145)
Q Consensus 802 --~~KI~~~V~FPe~LDLs~y~~~~------------------------------------------------------- 824 (1145)
..|+++.|.||..|||.+|+...
T Consensus 240 ~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 319 (415)
T 1vjv_A 240 NKKSKILRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNES 319 (415)
T ss_dssp TEEEECCCCCBCCSEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHH
T ss_pred CcchhhcCccCCCcEeEhHHhcChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhccccccccccccccchhhhhchhhHHh
Confidence 48999999999999999987521
Q ss_pred --------------------CCCCCceEEEEEEEEeecCCCCCCceEEEEEEc--CCCcEEEEcCCcceeecccccCCCC
Q 001134 825 --------------------SDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKS--TQNKWFKVDDSTVTAVERERVLTEG 882 (1145)
Q Consensus 825 --------------------s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~--~~gkWy~fNDs~Vt~Vs~eeVls~~ 882 (1145)
......|+|+|||+|.|. ++.+||||||||+ .+++||+|||+.|+++++++|+...
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~--s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~~ 397 (415)
T 1vjv_A 320 EKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGA--NSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLA 397 (415)
T ss_dssp HHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESS--STTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGG
T ss_pred hhhhhhhhcccccccccccccCCCceEEEEEEEEecCC--CCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCHHHHhhhc
Confidence 123478999999999994 5889999999998 5889999999999999999998754
Q ss_pred -------cEEEEEEEeC
Q 001134 883 -------AYMLLYARCS 892 (1145)
Q Consensus 883 -------AYILFYeR~s 892 (1145)
||||||+|+.
T Consensus 398 ~g~~~~~aYiLfY~r~~ 414 (415)
T 1vjv_A 398 GGGESDSALILMYKGFG 414 (415)
T ss_dssp CCTTSCEEEEEEEEETT
T ss_pred CCCCcceEEEEEEEecC
Confidence 9999999974
No 10
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=3.3e-52 Score=498.54 Aligned_cols=294 Identities=28% Similarity=0.433 Sum_probs=253.6
Q ss_pred cccCccccccCCCccchHHHHHHHhCChhHHHHHhhcccccccccccchHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 001134 581 VELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSI 660 (1145)
Q Consensus 581 ~el~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~~~~~cll~qL~kLf~~l~s~k~~isP~~fl~~L~~i 660 (1145)
...+++||.|+||||||||+||+|+++|+||++++..... ......++.++|+.||..|+....++.|..|+..+.
T Consensus 171 ~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~--~~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~-- 246 (522)
T 2f1z_A 171 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE--GDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFG-- 246 (522)
T ss_dssp TTTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCC--SSCTTTCHHHHHHHHHHHHHHCSSCBCCTTHHHHTC--
T ss_pred ccCCccceecCcccHHHHHHHHHHhccHHHHHHHhhcccc--CCcccchHHHHHHHHHHHHhcCCCccCcHHHHhhcC--
Confidence 3568899999999999999999999999999998754321 112345789999999999998878888888876653
Q ss_pred ccccCCCccccHHHHHHHHHHhhhhhhhhhhcCCCCCCCCccccccccccceEEeEEEEEcCCCCeeeeeeeeeeeeeee
Q 001134 661 GSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEI 740 (1145)
Q Consensus 661 ~~~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~~~~e~siI~~lF~G~l~s~ikC~~C~~~S~~~E~f~~LsL~I 740 (1145)
.+.|..+.||||+|||++||+.|++++... ...++|.++|+|++.+.++|..|+..+.+.++|++|+|+|
T Consensus 247 ~~~~~~~~QqDa~Efl~~LLd~L~~~l~~~----------~~~s~i~~lF~G~~~s~i~C~~C~~~s~~~e~f~~LsL~i 316 (522)
T 2f1z_A 247 WETLDSFMQHDVQELCRVLLDNVENKMKGT----------CVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSI 316 (522)
T ss_dssp CCTTTSSTTSCHHHHHHHHHHHHHHHHTTS----------TTTTHHHHHHCEEEEEEECCSSSCCCCCEEEEESCEEECC
T ss_pred CccCCCcccccHHHHHHHHHHHHHhhccCC----------ccccchhhheeEEEEEEEEcCCCCceeeeeeeeEEEEEEe
Confidence 367889999999999999999999865321 2346899999999999999999999999999999999999
Q ss_pred ecccccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeeccccc----cccccceEecCcccC
Q 001134 741 EGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSGK----FGKLNKSIQFPEILD 816 (1145)
Q Consensus 741 p~~~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~~----~~KI~~~V~FPe~LD 816 (1145)
++. .+|.++|..|+..|.++++|+|.|++|+ .+.|.|+..|.++|+||+|||+||.++. ..|+++.|.||+.||
T Consensus 317 ~~~-~~l~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ld 394 (522)
T 2f1z_A 317 KGK-KNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLP 394 (522)
T ss_dssp TTC-CBHHHHHHHHTCEEEECTTSCBCCGGGC-SBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEE
T ss_pred CCc-ccchHHHHHhhceeecCCcceeecCcCC-ccceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCCeec
Confidence 864 7899999999999999999999999996 5789999999999999999999998643 479999999999999
Q ss_pred CCCccCCCC-CCCCceEEEEEEEEeecCCCCCCceEEEEEEc-CCCcEEEEcCCcceeecccccCC--------------
Q 001134 817 LAPYMSGTS-DKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKS-TQNKWFKVDDSTVTAVERERVLT-------------- 880 (1145)
Q Consensus 817 Ls~y~~~~s-~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~-~~gkWy~fNDs~Vt~Vs~eeVls-------------- 880 (1145)
|.+|+.... .....|+|+|||+|.| .+.+|||+||+|. .+++||+|||+.|+++++++|+.
T Consensus 395 l~~~~~~~~~~~~~~Y~L~avv~H~G---~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~ 471 (522)
T 2f1z_A 395 LDEFLQKTDPKDPANYILHAVLVHSG---DNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRH 471 (522)
T ss_dssp CGGGBSSCCTTSCCEEEEEEEEEEEC---SSSCSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC--------
T ss_pred chhhhccccCCCCcEEEEEEEEEecc---cCCCceEEEEEecCCCCCEEEEECceeEECCHHHHHHhhcCCCccccccCc
Confidence 999987543 3347899999999999 4689999999996 47899999999999999988874
Q ss_pred -CCcEEEEEEEeCC
Q 001134 881 -EGAYMLLYARCSP 893 (1145)
Q Consensus 881 -~~AYILFYeR~s~ 893 (1145)
..||||||+|.+.
T Consensus 472 ~~~aYiLfY~r~~~ 485 (522)
T 2f1z_A 472 CTNAYMLVYIRESK 485 (522)
T ss_dssp CEEEEEEEEEETTS
T ss_pred CCceEEEEEEECCc
Confidence 4699999999874
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.94 E-value=2e-27 Score=268.50 Aligned_cols=222 Identities=21% Similarity=0.273 Sum_probs=156.4
Q ss_pred CccccccCCCccchHHHHHHHhCChhHHHHHhhcccccccccccchHHHHH-HHHHHHHhcCCCCCCHHHHHHHHHhhcc
Q 001134 584 QPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCEL-ENLILRAKDGKSPLSPIGILSRLQSIGS 662 (1145)
Q Consensus 584 ~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~~~~~cll~qL-~kLf~~l~s~k~~isP~~fl~~L~~i~~ 662 (1145)
.|.||.|+||||||||.||+|+.+|++++.|+..............+...| +.|+..|.. ..+.|..++..|++..+
T Consensus 8 ~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~~~~~~~l~~~L~r~i~~~Lrk--~~~~P~~~l~~LR~~~p 85 (374)
T 2vhf_A 8 KKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRI--YGYVCATKIMKLRKILE 85 (374)
T ss_dssp ESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTSCTTHHHHHHHHHHTTHHHHHH--TSEECHHHHHHHHHHHH
T ss_pred CCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCcchhHHHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhH
Confidence 589999999999999999999999999999987643322222223578888 788888886 88999999999999999
Q ss_pred ccCC-----CccccHHHHHHHHHHhhhhh-hh-hhhcCCCCCCCCccccccccccceEEeEEEEEcCCCCeeeeeeeeee
Q 001134 663 QLGN-----GREEDAHEFLRYAIDTMQSV-CI-EEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMD 735 (1145)
Q Consensus 663 ~F~~-----g~QQDA~EFL~~LLD~L~~e-~l-k~~~~~~~~~~~~e~siI~~lF~G~l~s~ikC~~C~~~S~~~E~f~~ 735 (1145)
+|.. +.||||.|||..||.+|... .. +.... ......+++.++|. . ..+ .
T Consensus 86 Qfae~~G~~~~QQDaEE~~t~Ll~~L~~~ep~lkl~s~----~~~~~~~~~~q~f~--------------E--~~e---~ 142 (374)
T 2vhf_A 86 KVEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRSA----GQKVQDCYFYQIFM--------------E--KNE---K 142 (374)
T ss_dssp HHC--------CCCHHHHHHHHHTTTTCCCCSEEEEET----TCCCEEESCEECCC--------------C--CC-----
T ss_pred HHhcccCCCccccCHHHHHHHHHHHHhhcccccccccc----cccccccHHHHHhc--------------C--ccc---c
Confidence 8854 68999999999999999764 21 11100 00011234555554 0 000 0
Q ss_pred eeeeeecccccHHHHHH-HhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeeccccccccccceEecCcc
Q 001134 736 LTVEIEGDIGNLEEALR-RYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSGKFGKLNKSIQFPEI 814 (1145)
Q Consensus 736 LsL~Ip~~~~SLed~L~-~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~~~~KI~~~V~FPe~ 814 (1145)
. ...++..+++ +|+. +| +.|.++|.||+||+.|| ++..||..+|.||.+
T Consensus 143 ~------~~e~~~qL~e~nfl~----~g------------------ikisrLP~yLtVq~vRF--gKkaKIlrkV~fp~e 192 (374)
T 2vhf_A 143 V------GVPTIQQLLEWSFIN----SN------------------LKFAEAPSCLIIQMPRF--GKDFKLFKKIFPSLE 192 (374)
T ss_dssp C------CCCBHHHHHHHHHHH----HT------------------EEESSCCSEEEEECCCC--SSSSSCCCCCBCCSE
T ss_pred c------CCcHHHHhhhHHHHH----cC------------------CeeecCCcceEEeeecc--CccccccCCCCCcch
Confidence 0 0234444444 2221 11 23999999999999999 566799999999999
Q ss_pred cCCCCccCCC---------------------------C-----------------------------------------C
Q 001134 815 LDLAPYMSGT---------------------------S-----------------------------------------D 826 (1145)
Q Consensus 815 LDLs~y~~~~---------------------------s-----------------------------------------~ 826 (1145)
||+.+++... . +
T Consensus 193 LDvtdl~tdelr~~~vr~kl~e~e~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 272 (374)
T 2vhf_A 193 LNITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLHPKRLNHKYNPVSLPKDLPDWDWRHGCI 272 (374)
T ss_dssp ECCGGGBSSSCCBCTTTSCBCCEECGGGTTCTTTTTTSCCEECHHHHHHHTTSGGGTTCCCEECCC--------------
T ss_pred hccHhhcCcchhhccHhHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhhhhcccccccccCccccccccccCCC
Confidence 9988665310 0 0
Q ss_pred CCCceEEEEEEEEeecCCCCCCceEEEEEEc--CCCcEEEEcC
Q 001134 827 KLPIYRLYGVVVHLDIMNAAFSGHYVCYVKS--TQNKWFKVDD 867 (1145)
Q Consensus 827 ~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~--~~gkWy~fND 867 (1145)
....|+|+|||+ . ++||||||||. .+++||.||-
T Consensus 273 psg~yeL~aVlt-a------dsgHYvafVK~~~~d~~W~~FDs 308 (374)
T 2vhf_A 273 PCQNMELFAVLC-I------ETSHYVAFVKYGKDDSAWLFFDS 308 (374)
T ss_dssp --CCEEEEEEEE-E------ETTEEEEEEECSSSTTCEEEEET
T ss_pred CceeEEEEEEEE-c------cCCceEEEEEecCCCCCeEEEec
Confidence 115799999999 3 36999999997 4789999974
No 12
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Probab=98.95 E-value=4.4e-10 Score=99.68 Aligned_cols=48 Identities=35% Similarity=1.002 Sum_probs=43.8
Q ss_pred cCCCCCCCCCCCCccccccCCCcceecCHHHHHHhhhhhhcccCCCCCc
Q 001134 69 VPQHPQCAVCFSPTTTRCARCKAVRYCSGKCQIVHWRQGHKDECQPPSI 117 (1145)
Q Consensus 69 ~~~~~~C~~Cg~~~~~~Cs~Ck~v~YCS~~CQ~~dW~~~HK~~C~~~~~ 117 (1145)
.+..+.|..|++.+.++|++|+.++||+++||++||+. ||.+|.+...
T Consensus 12 ~~~~~~C~~C~~~~~~~Cs~Ck~v~YCs~eCQ~~~W~~-HK~~C~~~~~ 59 (70)
T 2d8q_A 12 APERPRCAYCSAEASKRCSRCQNEWYCCRECQVKHWEK-HGKTCVLAAQ 59 (70)
T ss_dssp CCCCCBCSSSCCBCCCBCTTTSCCBCSCHHHHHHTHHH-HHHHCCCCCC
T ss_pred cCCCCcCCCCCCcccccCCCCCCEeeCCHHHhHHHHHH-HHHHHHHHHH
Confidence 45578999999999999999999999999999999988 9999997664
No 13
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=98.91 E-value=7.6e-10 Score=95.24 Aligned_cols=46 Identities=30% Similarity=0.790 Sum_probs=42.0
Q ss_pred CCCCCCCCCCCCccccccCCCcceecCHHHHHHhhhhhhcccCCCCC
Q 001134 70 PQHPQCAVCFSPTTTRCARCKAVRYCSGKCQIVHWRQGHKDECQPPS 116 (1145)
Q Consensus 70 ~~~~~C~~Cg~~~~~~Cs~Ck~v~YCS~~CQ~~dW~~~HK~~C~~~~ 116 (1145)
+....|..|++.+.++|++|+.++||+++||++||+. ||.+|..+.
T Consensus 13 ~~~~~C~~C~~~~~~~Cs~C~~v~YCs~~CQ~~~W~~-Hk~~C~~~~ 58 (60)
T 2dj8_A 13 DSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEK-HHHICSGPS 58 (60)
T ss_dssp CCSCCCSSSCSCCCEECTTTSCCEESSHHHHHHTHHH-HTTTSCCSS
T ss_pred CCCcccccCCCCCcccCCCCCCEeeeCHHHHHHHHHH-HHHHHHhcc
Confidence 4567899999999999999999999999999999986 999998764
No 14
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=98.91 E-value=7.8e-10 Score=95.20 Aligned_cols=46 Identities=26% Similarity=0.707 Sum_probs=41.6
Q ss_pred CCCCCCCCCCCCccccccCCCcceecCHHHHHHhhhhhhcccCCCCC
Q 001134 70 PQHPQCAVCFSPTTTRCARCKAVRYCSGKCQIVHWRQGHKDECQPPS 116 (1145)
Q Consensus 70 ~~~~~C~~Cg~~~~~~Cs~Ck~v~YCS~~CQ~~dW~~~HK~~C~~~~ 116 (1145)
.....|..||+.+.++|++|+.++||+++||+.||+. ||.+|....
T Consensus 11 ~~~~~C~~C~~~~~~~Cs~C~~v~YCs~~CQ~~dW~~-Hk~~C~~~~ 56 (60)
T 2od1_A 11 DSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEK-HHHICGQTL 56 (60)
T ss_dssp CCSSCCTTTSSCCCEECTTTSCCEESSHHHHHHHHHH-HTTTSSCSS
T ss_pred CCCCccccCCCcccccCCCCCCeeecCHHHHHHHHHH-HhHHHcccc
Confidence 3457899999999999999999999999999999985 999998654
No 15
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=98.90 E-value=7.6e-10 Score=96.34 Aligned_cols=47 Identities=26% Similarity=0.678 Sum_probs=42.4
Q ss_pred CCCCCCCCCCCCccccccCCCcceecCHHHHHHhhhhhhcccCCCCCc
Q 001134 70 PQHPQCAVCFSPTTTRCARCKAVRYCSGKCQIVHWRQGHKDECQPPSI 117 (1145)
Q Consensus 70 ~~~~~C~~Cg~~~~~~Cs~Ck~v~YCS~~CQ~~dW~~~HK~~C~~~~~ 117 (1145)
+....|..||+.+.++|++|+.++|||++||+.||+. ||.+|.....
T Consensus 15 ~~~~~C~~C~~~~~~~Cs~C~~~~YCs~~CQ~~~W~~-Hk~~C~~~~~ 61 (64)
T 2odd_A 15 DSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEK-HHHICGQTLQ 61 (64)
T ss_dssp CCSSSCTTTSSCCCEEETTTSCCEESSHHHHHHHHHH-HTTTTTSSCS
T ss_pred CCCCcCccccCCCcccCCCCCChhhCCHHHHHHHHHH-HhHHHhcccc
Confidence 4567899999999999999999999999999999985 9999986543
No 16
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=98.82 E-value=2.1e-09 Score=89.66 Aligned_cols=43 Identities=30% Similarity=0.814 Sum_probs=38.7
Q ss_pred CCCCCCCCCCccccccCCCcceecCHHHHHHhhhhhhcccCCCC
Q 001134 72 HPQCAVCFSPTTTRCARCKAVRYCSGKCQIVHWRQGHKDECQPP 115 (1145)
Q Consensus 72 ~~~C~~Cg~~~~~~Cs~Ck~v~YCS~~CQ~~dW~~~HK~~C~~~ 115 (1145)
...|..||+.+.++|++|+.++|||++||..||+. ||.+|.+.
T Consensus 9 ~~~C~~C~~~~~~~C~~C~~~~YCs~~CQ~~~W~~-Hk~~C~~~ 51 (52)
T 2jw6_A 9 EQSCVNCGREAMSECTGCHKVNYCSTFCQRKDWKD-HQHICGQS 51 (52)
T ss_dssp --CCSSSSSSCSEECTTTCSSEESSHHHHHHHTTT-GGGTTTCC
T ss_pred CCcCCCCCCCCcCcCCCCCCEeecCHHHHHHHHHH-HCHHHccC
Confidence 56799999999999999999999999999999986 99999853
No 17
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.79 E-value=7e-06 Score=96.36 Aligned_cols=45 Identities=36% Similarity=0.872 Sum_probs=39.5
Q ss_pred CCCCCCCCCCC--ccccccCCCcceecCHHHHHHhhhhhhcccCCCCC
Q 001134 71 QHPQCAVCFSP--TTTRCARCKAVRYCSGKCQIVHWRQGHKDECQPPS 116 (1145)
Q Consensus 71 ~~~~C~~Cg~~--~~~~Cs~Ck~v~YCS~~CQ~~dW~~~HK~~C~~~~ 116 (1145)
....|..|+++ ..++|++|+.++|||++||+.||+. ||.+|+...
T Consensus 48 ~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~-Hk~eC~~l~ 94 (433)
T 3qww_A 48 RGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPL-HKLECSSMV 94 (433)
T ss_dssp TTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHHHHH-HTTTHHHHH
T ss_pred cCCcCCcccccCCCCCCCCCCcceeecChhhhhhhhhH-HHHHHHHHH
Confidence 46789999964 6799999999999999999999975 999997554
No 18
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.69 E-value=1e-05 Score=94.68 Aligned_cols=46 Identities=35% Similarity=0.858 Sum_probs=39.9
Q ss_pred CCCCCCCCCC--CccccccCCCcceecCHHHHHHhhhhhhcccCCCCCc
Q 001134 71 QHPQCAVCFS--PTTTRCARCKAVRYCSGKCQIVHWRQGHKDECQPPSI 117 (1145)
Q Consensus 71 ~~~~C~~Cg~--~~~~~Cs~Ck~v~YCS~~CQ~~dW~~~HK~~C~~~~~ 117 (1145)
....|..|++ ....+|++|+.++|||++||+.||+. ||.+|+....
T Consensus 46 ~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~-Hk~eC~~~~~ 93 (429)
T 3qwp_A 46 RGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPD-HKRECKCLKS 93 (429)
T ss_dssp BTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHTHHH-HHHHHHHHHH
T ss_pred CCCcCcCCCCcCCCCCcCCCCCCcccCChhhhhhhhhh-hHHhhhhHHh
Confidence 4678999996 56699999999999999999999985 9999976543
No 19
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.56 E-value=2.2e-05 Score=93.51 Aligned_cols=46 Identities=35% Similarity=0.830 Sum_probs=39.6
Q ss_pred CCCCCCCCCC--CccccccCCCcceecCHHHHHHhhhhhhcccCCCCCc
Q 001134 71 QHPQCAVCFS--PTTTRCARCKAVRYCSGKCQIVHWRQGHKDECQPPSI 117 (1145)
Q Consensus 71 ~~~~C~~Cg~--~~~~~Cs~Ck~v~YCS~~CQ~~dW~~~HK~~C~~~~~ 117 (1145)
....|..|++ ....+|++|+.++|||++||+.||+. ||.+|.....
T Consensus 48 ~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~-Hk~eC~~~~~ 95 (490)
T 3n71_A 48 INFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLN-HKNECAAIKK 95 (490)
T ss_dssp TTTBCTTTCCBCSCCEECTTTSCCEESSHHHHHHHHHH-HHHHHHHHHH
T ss_pred cCCcCCCCCCCCCCCCCCCCCCCcCcCCHHHhhhhhhH-HHHHhHHHHh
Confidence 4678999976 46699999999999999999999985 9999976543
No 20
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=96.75 E-value=0.018 Score=60.98 Aligned_cols=179 Identities=14% Similarity=0.195 Sum_probs=98.0
Q ss_pred cccCCCccchHHHHHHHhCChhHHHHHhhcccccccccccchHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhccccCCC
Q 001134 588 LINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSIGSQLGNG 667 (1145)
Q Consensus 588 L~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~~~~~cll~qL~kLf~~l~s~k~~isP~~fl~~L~~i~~~F~~g 667 (1145)
|.=.-|+||+||++-+|=++..+ ++.++.++.. -.|..|...+..+. ....|
T Consensus 16 Lkq~dNNCwVNaa~l~LQ~~~~~-----------------------~~~aw~~f~~----Gd~~~fV~~~Ya~~-~~~~G 67 (211)
T 3mp2_A 16 LKQGDNNCWINACCYQLQAFDFF-----------------------NNEAWEKFKK----GDVMDFVNLCYAAT-TLARG 67 (211)
T ss_dssp ECCCTTCHHHHHHHHHHTTCTTC-----------------------CCHHHHHHTT----TCCHHHHHHHHHHH-TCCTT
T ss_pred EEccCCCcHHHHHHHHHHhcChh-----------------------HHHHHHHHhC----CChHHHHHHHHHHc-CCCCC
Confidence 44456999999999777555443 1122222222 24555555553332 45667
Q ss_pred ccccHHHHHHHHHHhhhhhhhhhhcCCCCCCCCccccccccccceEEeEEEEEcCCCCeeeeeeeeeeeeeeeecccccH
Q 001134 668 REEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEGDIGNL 747 (1145)
Q Consensus 668 ~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~~~~e~siI~~lF~G~l~s~ikC~~C~~~S~~~E~f~~LsL~Ip~~~~SL 747 (1145)
+-.||+++|..|+..+.. ..+...+.|. |+.. .+.+.-.-..+..
T Consensus 68 ~~gDa~~~L~~Ll~~~~~--------------------------a~~v~~~~C~-Cg~~---~~~~~G~v~~~~~----- 112 (211)
T 3mp2_A 68 HSGDAEYLLELMLNDYST--------------------------AKIVLAAKCG-CGEK---EIVLERAVFKLTP----- 112 (211)
T ss_dssp SCCCHHHHHHHHHTTCCC--------------------------EEEEEEEEET-TEEE---EEEEEESEEESCC-----
T ss_pred CCcCHHHHHHHHHHhhcc--------------------------ceEEEEEEEc-CCCc---eEEEeeeEEEEEe-----
Confidence 889999999999854431 2344567887 8762 2222222222211
Q ss_pred HHHHHHhccccccCCCCcc-ccCCCCCcceEEEEEEEeeCCceEEEeeeeccccccccccceEecCcccCCCCccCCCCC
Q 001134 748 EEALRRYTGTEILDGENKY-KCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSGKFGKLNKSIQFPEILDLAPYMSGTSD 826 (1145)
Q Consensus 748 ed~L~~f~~~E~Ldgdn~y-~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~~~~KI~~~V~FPe~LDLs~y~~~~s~ 826 (1145)
...+ -.| .|..|++... .++...+-.++|.= + + .|..+++....
T Consensus 113 -----------~~~~-~~~g~C~~c~~~~~----~~v~~v~Gt~i~~~-----~---~------~~~~v~~~~~~----- 157 (211)
T 3mp2_A 113 -----------LKES-FNYGVCGDCMQVNT----CRFLSVEGSGVFVH-----D---I------LSKQTPEAMFV----- 157 (211)
T ss_dssp -----------BSSC-EEEEECTTTCCEEE----EEEEEEEEEEEEEE-----E---E------ECSCCCGGGBS-----
T ss_pred -----------eecC-CCceECCCCCceeE----EEEEEeeeeEEEEc-----C---C------CCcccccccce-----
Confidence 0011 115 8999986443 23333333322211 0 0 23333333211
Q ss_pred CCCceEEEEEEEEeecCCCCCCceEEEEEEcCCCcEEEEcCCcceeec
Q 001134 827 KLPIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQNKWFKVDDSTVTAVE 874 (1145)
Q Consensus 827 ~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~~gkWy~fNDs~Vt~Vs 874 (1145)
-+-.+-++..| +..+|||+.+... .+ +.+|...+.+++
T Consensus 158 ----v~~~~~~vF~G---~~~~GHY~~~~~~-~~--~~vDG~~~~~~~ 195 (211)
T 3mp2_A 158 ----VKPVMHAVYTG---TTQNGHYMVDDIE-HG--YCVDGMGIKPLK 195 (211)
T ss_dssp ----SCCSEEEEEES---CTTTCEEEEEETT-TT--EEEETTEEECCC
T ss_pred ----eeceeEEEEEc---CCCCceEEEEecc-cc--eEEeCCceeEcc
Confidence 11134566688 6789999999775 33 999999998886
No 21
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=95.55 E-value=0.17 Score=56.70 Aligned_cols=192 Identities=16% Similarity=0.222 Sum_probs=98.7
Q ss_pred cccccCCCccchHHHHHHHhCChh-HHHHHhhcccccccccccchHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcccc
Q 001134 586 CGLINCGNSCYANVVLQCLAFTPP-LTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSIGSQL 664 (1145)
Q Consensus 586 ~GL~NlGNTCYmNSVLQ~L~~iP~-Fr~~LL~~~~~~~~~~~~~cll~qL~kLf~~l~s~k~~isP~~fl~~L~~i~~~F 664 (1145)
+=|.=.-|+||+||++=+|=++.. |+. . .|+.++.+...+ .|..|...+-.+. ..
T Consensus 103 ~vLkq~dNNCwVNaa~l~LQ~~~~~F~~----------------~---~l~~aw~~f~~G----d~~~FVa~~Ya~~-~~ 158 (315)
T 2fe8_A 103 TSIKWADNNCYLSSVLLALQQLEVKFNA----------------P---ALQEAYYRARAG----DAANFCALILAYS-NK 158 (315)
T ss_dssp ECCCCCTTTHHHHHHHHHHHTSCCCBSS----------------H---HHHHHHHHHHHT----CCHHHHHHHHHHT-TC
T ss_pred EEEeecCCccHHHHHHHHHHhcCCccCC----------------H---HHHHHHHHHhCC----ChHHHHHHHHHhc-CC
Confidence 334445699999999877643332 111 1 223333333322 3556665554332 34
Q ss_pred CCCccccHHHHHHHHHHhhhhhhhhhhcCCCCCCCCccccccccccceEEeEEEEEcCCCCeeeeeeeeeeeeeee-ecc
Q 001134 665 GNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEI-EGD 743 (1145)
Q Consensus 665 ~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~~~~e~siI~~lF~G~l~s~ikC~~C~~~S~~~E~f~~LsL~I-p~~ 743 (1145)
..|+-.||+++|..|+.... ++ .......+.|..|+.......- +-..+ .+
T Consensus 159 ~~G~~gDa~~~L~~Ll~~~~---------------------v~---ta~~~~~~~C~~Cg~~~~~~~G---~~a~~~~~- 210 (315)
T 2fe8_A 159 TVGELGDVRETMTHLLQHAN---------------------LE---SAKRVLNVVCKHCGQKTTTLTG---VEAVMYMG- 210 (315)
T ss_dssp CTTSCCCHHHHHHHHHTTBC---------------------CT---TCEEEEEEEETTTEEEEEEEET---HHHHEEES-
T ss_pred CCCCCccHHHHHHHHHhcCC---------------------ee---eEEEEEeeecCCCCCCeEEEec---cEEEEEec-
Confidence 46788999999999965542 00 1122234789889744332221 10000 01
Q ss_pred cccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeeccccccccccceEecCcccCCCCccCC
Q 001134 744 IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSGKFGKLNKSIQFPEILDLAPYMSG 823 (1145)
Q Consensus 744 ~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~~~~KI~~~V~FPe~LDLs~y~~~ 823 (1145)
..++.+ |.. |. -.|..|+... ..+..-.+.|=+|+-+-. ..+. +..
T Consensus 211 ~~~~~~-~~~--------G~--~~~c~Cg~~~--~~~v~~~~g~~i~~s~~p-----------~~~~------~~~---- 256 (315)
T 2fe8_A 211 TLSYDN-LKT--------GV--SIPCVCGRDA--TQYLVQQESSFVMMSAPP-----------AEYK------LQQ---- 256 (315)
T ss_dssp CSCHHH-HHH--------CE--EEECTTSSEE--EEEEEEEESSEEEEEEEE-----------EEEE------EET----
T ss_pred cCchHH-hhc--------CC--cccccCCCEe--EEEEEEeecCEEEEeCCC-----------Cccc------ccC----
Confidence 112222 111 10 1377777532 223334455555553321 1121 111
Q ss_pred CCCCCCceEEEEEEEEeecCCCCCCceEEEEEEcCCCcEEEEcCCcceeecc
Q 001134 824 TSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQNKWFKVDDSTVTAVER 875 (1145)
Q Consensus 824 ~s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~~gkWy~fNDs~Vt~Vs~ 875 (1145)
..+ ++..+..| +..+|||+.+... .+. |+||-..+.+++.
T Consensus 257 -----~~~--~~a~vF~G---~~~~GHYt~~~~~-~~~-~~~Dg~~~~~~~~ 296 (315)
T 2fe8_A 257 -----GTF--LCANEYTG---NYQCGHYTHITAK-ETL-YRIDGAHLTKMSE 296 (315)
T ss_dssp -----TSC--SEEEEEES---CGGGCEEEEEEES-SSE-EEEETTEEEEESE
T ss_pred -----Cce--EEEEEEEC---CCCccceEEEecC-Cce-eEEeCCcceeccc
Confidence 112 34445578 5679999999875 333 8999999998864
No 22
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.94 E-value=0.18 Score=42.68 Aligned_cols=40 Identities=35% Similarity=0.924 Sum_probs=31.4
Q ss_pred CCCCCCCCCCCccccccCCCcceecCHHHHHHhhhhhhcccCCCCC
Q 001134 71 QHPQCAVCFSPTTTRCARCKAVRYCSGKCQIVHWRQGHKDECQPPS 116 (1145)
Q Consensus 71 ~~~~C~~Cg~~~~~~Cs~Ck~v~YCS~~CQ~~dW~~~HK~~C~~~~ 116 (1145)
....|.+|+..+..+|.+|. ++|||-.|.+. ||..|....
T Consensus 11 ~~~~C~vC~~~~kY~CPrC~-~~yCSl~C~k~-----Hk~~C~~~~ 50 (56)
T 2yqq_A 11 STVVCVICLEKPKYRCPACR-VPYCSVVCFRK-----HKEQCNPET 50 (56)
T ss_dssp CCCCCTTTCSCCSEECTTTC-CEESSHHHHHH-----HHHHCCCCC
T ss_pred CCCccCcCcCCCeeeCCCCC-CCeeCHHHHHH-----HHhhCcCCc
Confidence 34579999998889999999 57999999644 555586543
No 23
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=87.38 E-value=0.2 Score=42.76 Aligned_cols=30 Identities=33% Similarity=0.872 Sum_probs=25.4
Q ss_pred CCCCCCCC----CCccccccCCCcceecCHHHHHH
Q 001134 72 HPQCAVCF----SPTTTRCARCKAVRYCSGKCQIV 102 (1145)
Q Consensus 72 ~~~C~~Cg----~~~~~~Cs~Ck~v~YCS~~CQ~~ 102 (1145)
...|.+|+ ..+..+|.+|. ++|||..|.+.
T Consensus 11 ~~~C~vC~~~~~~~akY~CPrC~-~rYCSl~C~k~ 44 (59)
T 1x4s_A 11 AGPCGFCPAGEVQPARYTCPRCN-APYCSLRCYRT 44 (59)
T ss_dssp CEEECSSCTTCCEEECEECTTTC-CEESSHHHHHH
T ss_pred CCcCcCCCCCcCCCccccCcCCC-CCccChHHHHH
Confidence 45799998 46789999999 57999999974
No 24
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=85.55 E-value=0.29 Score=48.21 Aligned_cols=48 Identities=4% Similarity=0.065 Sum_probs=40.3
Q ss_pred CccceeeecccCCCCCCCccchhhhhhccccCCcccccccccCccccCccc
Q 001134 512 SSAMSAQIENSPSNVGNGLKTSLWKAVDQFRGSKSSKQCLSVGCETAGRYS 562 (1145)
Q Consensus 512 s~af~~ql~e~~~~g~~dLk~~~lk~~d~v~dp~LskhL~~~Gi~I~~~~k 562 (1145)
.-.++++|+++++.+ .++|- +.+++.|.+|.|.+||.+|||+|..+.|
T Consensus 79 ~H~l~v~l~t~~~~~-~~vwc--Y~cd~~V~dp~L~~hl~~fgi~~~~~~k 126 (129)
T 2g45_A 79 GYPLAVKLGTITPDG-ADVYS--YDEDDMVLDPSLAEHLSHFGIDMLKMQK 126 (129)
T ss_dssp CCCEEEETTCCBTTB-CCEEE--TTTTEEEECTTHHHHHHTTTCCTTTCCC
T ss_pred CCCEEEECCCCCCCC-CeEEE--CCCCCEeECccHHHHHHHHCCChhhhhc
Confidence 356888898888876 66664 5678899999999999999999999877
No 25
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=59.57 E-value=6.1 Score=39.26 Aligned_cols=37 Identities=16% Similarity=0.261 Sum_probs=27.8
Q ss_pred EEEEEEEEeecCCCCCCceEEEEEEcCCCcEEEEcCCcceeecc
Q 001134 832 RLYGVVVHLDIMNAAFSGHYVCYVKSTQNKWFKVDDSTVTAVER 875 (1145)
Q Consensus 832 eL~gVIvH~Gt~nsa~sGHYVAyVR~~~gkWy~fNDs~Vt~Vs~ 875 (1145)
+..|-|.-.| .+|-|-++-. ...||.+||+.+.+...
T Consensus 108 DfhAgIflkg------~eHAVFa~~T-S~GWyaiDDe~fypwtP 144 (167)
T 1qmy_A 108 DFHAGIFLKG------QEHAVFACVT-SNGWYAIDDEDFYPWTP 144 (167)
T ss_dssp GEEEEEEEET------TTEEEEEECC-TTSSEEEETTEEEECCC
T ss_pred hhhhheeecC------CCceEEEEEc-cCceEEecccccccCCC
Confidence 3456666666 3798888776 67799999999988753
No 26
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=48.70 E-value=8.4 Score=33.80 Aligned_cols=32 Identities=19% Similarity=0.433 Sum_probs=22.6
Q ss_pred CCCCCCCCCCccccccCCCcceecCHHHHHHhh
Q 001134 72 HPQCAVCFSPTTTRCARCKAVRYCSGKCQIVHW 104 (1145)
Q Consensus 72 ~~~C~~Cg~~~~~~Cs~Ck~v~YCS~~CQ~~dW 104 (1145)
...|..||++...+= .=..+.|||+.|+..|-
T Consensus 9 ~~~CP~Cgkp~~W~~-~~~~rPFCSeRCr~iDL 40 (68)
T 1lv3_A 9 TVNCPTCGKTVVWGE-ISPFRPFCSKRCQLIDL 40 (68)
T ss_dssp EEECTTTCCEEECSS-SSSCCSSSSHHHHHHHH
T ss_pred cCcCCCCCCcccccc-cCCCCcccCHHHHhhhH
Confidence 346999998765321 12355799999999983
No 27
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=29.00 E-value=64 Score=31.77 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=12.6
Q ss_pred EEeEEEEEcCCCCeeeee
Q 001134 713 YLRSKIKCTKCHGKSERQ 730 (1145)
Q Consensus 713 ~l~s~ikC~~C~~~S~~~ 730 (1145)
...-...|.+||+.....
T Consensus 66 ~~p~~~~C~~CG~~~~~~ 83 (139)
T 3a43_A 66 EEEAVFKCRNCNYEWKLK 83 (139)
T ss_dssp EECCEEEETTTCCEEEGG
T ss_pred ecCCcEECCCCCCEEecc
Confidence 344578999999885543
No 28
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.37 E-value=85 Score=26.62 Aligned_cols=36 Identities=28% Similarity=0.555 Sum_probs=29.3
Q ss_pred cCCCCCCCCCCCCccccccCCCcceecCHHHHHHhhh
Q 001134 69 VPQHPQCAVCFSPTTTRCARCKAVRYCSGKCQIVHWR 105 (1145)
Q Consensus 69 ~~~~~~C~~Cg~~~~~~Cs~Ck~v~YCS~~CQ~~dW~ 105 (1145)
.+..+.|..||+-+...|-.=-. .-||-+|...+-.
T Consensus 16 ~pgePvCvvCGryGeYICd~Td~-DVCSlECK~~~l~ 51 (60)
T 2yqp_A 16 EPGEPICVVCGRYGEYICDKTDE-DVCSLECKAKHLL 51 (60)
T ss_dssp CTTSCCCSSSSSCCSEECSSSCC-EESSHHHHHHHHH
T ss_pred CCCCceEEEecCccceeecCCCc-chhhHHHHHHHHH
Confidence 46678899999999988876544 4899999988873
Done!