Query 001136
Match_columns 1143
No_of_seqs 578 out of 2101
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 12:51:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001136.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001136hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dkt_A Ring finger and CHY zin 100.0 1.1E-48 3.8E-53 386.1 8.0 138 879-1021 4-142 (143)
2 2k2d_A Ring finger and CHY zin 99.9 1.2E-23 4E-28 190.0 2.6 72 1061-1132 1-72 (79)
3 2p0n_A Hypothetical protein NM 99.7 2E-16 6.9E-21 163.2 16.5 152 37-191 13-169 (172)
4 3cax_A Uncharacterized protein 99.4 5.2E-13 1.8E-17 153.8 15.7 153 38-190 7-166 (369)
5 2p0n_A Hypothetical protein NM 99.4 8.8E-13 3E-17 136.0 14.5 145 300-452 14-167 (172)
6 3cax_A Uncharacterized protein 99.1 1.9E-10 6.3E-15 132.6 13.9 146 301-451 8-164 (369)
7 2ecl_A Ring-box protein 2; RNF 99.1 4.7E-11 1.6E-15 108.5 4.7 49 1020-1069 26-75 (81)
8 2ecm_A Ring finger and CHY zin 99.1 8E-11 2.7E-15 98.2 4.8 52 1018-1069 3-54 (55)
9 1iym_A EL5; ring-H2 finger, ub 99.0 1.3E-10 4.5E-15 96.9 4.7 49 1020-1069 5-54 (55)
10 2ep4_A Ring finger protein 24; 99.0 1.4E-10 4.8E-15 102.8 4.2 56 1016-1072 11-66 (74)
11 1x4j_A Ring finger protein 38; 99.0 1E-10 3.6E-15 104.1 3.2 53 1018-1071 21-73 (75)
12 2kiz_A E3 ubiquitin-protein li 99.0 2.4E-10 8.3E-15 99.9 4.7 52 1017-1069 11-62 (69)
13 2l0b_A E3 ubiquitin-protein li 99.0 2.5E-10 8.6E-15 105.8 3.9 50 1019-1069 39-88 (91)
14 2ect_A Ring finger protein 126 98.9 6.5E-10 2.2E-14 99.5 4.6 51 1019-1070 14-64 (78)
15 3dpl_R Ring-box protein 1; ubi 98.9 9.7E-10 3.3E-14 105.0 4.9 48 1021-1068 49-99 (106)
16 1v87_A Deltex protein 2; ring- 98.9 1.1E-09 3.7E-14 105.2 4.8 54 1018-1071 23-95 (114)
17 3ng2_A RNF4, snurf, ring finge 98.8 1.8E-09 6.3E-14 94.5 3.3 53 1018-1070 8-63 (71)
18 2ea6_A Ring finger protein 4; 98.8 2.1E-09 7E-14 93.5 3.3 51 1019-1069 14-67 (69)
19 2xeu_A Ring finger protein 4; 98.8 3E-09 1E-13 91.0 3.9 51 1020-1070 3-56 (64)
20 1chc_A Equine herpes virus-1 r 98.7 5E-09 1.7E-13 91.2 4.0 49 1020-1071 5-53 (68)
21 2ecn_A Ring finger protein 141 98.7 2.2E-09 7.6E-14 94.0 -0.2 51 1019-1074 14-64 (70)
22 1g25_A CDK-activating kinase a 98.6 1.9E-08 6.6E-13 86.9 4.6 51 1020-1070 3-55 (65)
23 2ct2_A Tripartite motif protei 98.6 1.8E-08 6.2E-13 91.8 4.5 51 1020-1070 15-68 (88)
24 2d8t_A Dactylidin, ring finger 98.6 1.4E-08 4.7E-13 89.4 3.6 48 1019-1070 14-61 (71)
25 4a0k_B E3 ubiquitin-protein li 98.6 4.5E-09 1.5E-13 102.1 0.3 49 1020-1068 48-110 (117)
26 2djb_A Polycomb group ring fin 98.6 2.4E-08 8.2E-13 88.1 4.0 48 1020-1070 15-62 (72)
27 2csy_A Zinc finger protein 183 98.6 4.6E-08 1.6E-12 88.2 5.1 46 1020-1069 15-60 (81)
28 4ayc_A E3 ubiquitin-protein li 98.6 3E-08 1E-12 98.8 4.1 47 1021-1071 54-100 (138)
29 1e4u_A Transcriptional repress 98.5 3.3E-08 1.1E-12 89.3 3.1 59 1019-1079 10-71 (78)
30 2d8s_A Cellular modulator of i 98.5 4.9E-08 1.7E-12 88.6 3.8 51 1017-1069 12-69 (80)
31 2yur_A Retinoblastoma-binding 98.5 6E-08 2.1E-12 86.1 4.1 51 1020-1074 15-68 (74)
32 3lrq_A E3 ubiquitin-protein li 98.5 8.6E-08 2.9E-12 90.3 4.6 48 1020-1070 22-70 (100)
33 2y43_A E3 ubiquitin-protein li 98.5 8.3E-08 2.8E-12 89.9 4.3 48 1020-1070 22-69 (99)
34 4ap4_A E3 ubiquitin ligase RNF 98.5 6.3E-08 2.2E-12 94.4 3.7 53 1019-1071 6-61 (133)
35 2ysl_A Tripartite motif-contai 98.5 1.1E-07 3.7E-12 83.7 4.7 47 1019-1069 19-68 (73)
36 2ecy_A TNF receptor-associated 98.4 9.5E-08 3.2E-12 82.8 4.1 47 1020-1070 15-62 (66)
37 1t1h_A Gspef-atpub14, armadill 98.4 1.3E-07 4.5E-12 84.5 4.5 47 1020-1070 8-55 (78)
38 2ckl_A Polycomb group ring fin 98.4 2.2E-07 7.4E-12 88.5 4.9 48 1020-1070 15-62 (108)
39 2ckl_B Ubiquitin ligase protei 98.4 2.7E-07 9.2E-12 94.4 5.6 48 1021-1071 55-103 (165)
40 4ap4_A E3 ubiquitin ligase RNF 98.4 2.2E-07 7.5E-12 90.6 4.7 54 1018-1071 70-126 (133)
41 3fl2_A E3 ubiquitin-protein li 98.3 2.4E-07 8.2E-12 90.3 4.2 47 1020-1070 52-99 (124)
42 2ecw_A Tripartite motif-contai 98.3 2.7E-07 9.3E-12 83.0 4.0 46 1020-1069 19-70 (85)
43 2egp_A Tripartite motif-contai 98.3 1.1E-07 3.8E-12 84.8 1.3 47 1020-1070 12-65 (79)
44 2ecj_A Tripartite motif-contai 98.3 3.2E-07 1.1E-11 76.9 3.8 41 1020-1064 15-58 (58)
45 2ysj_A Tripartite motif-contai 98.3 3.9E-07 1.3E-11 78.1 4.2 41 1020-1064 20-63 (63)
46 2ecv_A Tripartite motif-contai 98.3 3.1E-07 1.1E-11 82.6 3.8 47 1020-1070 19-71 (85)
47 2ct0_A Non-SMC element 1 homol 98.2 4.7E-07 1.6E-11 80.9 3.8 47 1020-1069 15-63 (74)
48 1z6u_A NP95-like ring finger p 98.2 6.8E-07 2.3E-11 90.4 4.3 48 1020-1071 78-126 (150)
49 3l11_A E3 ubiquitin-protein li 98.2 3.6E-07 1.2E-11 87.8 2.0 47 1020-1070 15-62 (115)
50 3hct_A TNF receptor-associated 98.2 5.7E-07 1.9E-11 87.0 3.1 49 1020-1072 18-67 (118)
51 3ztg_A E3 ubiquitin-protein li 98.2 7.1E-07 2.4E-11 82.2 3.6 46 1020-1069 13-61 (92)
52 1jm7_A BRCA1, breast cancer ty 98.1 1.1E-06 3.6E-11 83.7 4.0 47 1020-1070 21-70 (112)
53 2vje_A E3 ubiquitin-protein li 98.1 8.6E-07 3E-11 76.8 2.3 53 1016-1071 4-58 (64)
54 1rmd_A RAG1; V(D)J recombinati 98.1 1.7E-06 5.8E-11 83.2 4.2 48 1020-1071 23-71 (116)
55 2kr4_A Ubiquitin conjugation f 98.0 4.1E-06 1.4E-10 76.6 5.0 47 1020-1070 14-60 (85)
56 2vje_B MDM4 protein; proto-onc 98.0 1.6E-06 5.5E-11 74.8 2.1 51 1018-1071 5-57 (63)
57 3hcs_A TNF receptor-associated 98.0 5.3E-06 1.8E-10 85.1 5.5 49 1020-1072 18-67 (170)
58 1bor_A Transcription factor PM 98.0 1.9E-06 6.4E-11 72.5 1.7 44 1019-1069 5-48 (56)
59 2kre_A Ubiquitin conjugation f 98.0 5.1E-06 1.7E-10 78.4 4.7 47 1020-1070 29-75 (100)
60 2y1n_A E3 ubiquitin-protein li 97.9 4.1E-06 1.4E-10 96.4 4.4 48 1020-1071 332-380 (389)
61 1wgm_A Ubiquitin conjugation f 97.9 8.4E-06 2.9E-10 76.6 5.3 47 1020-1070 22-69 (98)
62 1jm7_B BARD1, BRCA1-associated 97.9 3.6E-06 1.2E-10 81.2 2.3 45 1020-1069 22-66 (117)
63 4ic3_A E3 ubiquitin-protein li 97.9 3.5E-06 1.2E-10 75.0 1.8 44 1020-1071 24-68 (74)
64 3knv_A TNF receptor-associated 97.8 3.6E-06 1.2E-10 84.3 1.2 45 1020-1068 31-76 (141)
65 3k1l_B Fancl; UBC, ring, RWD, 97.7 7.2E-06 2.5E-10 92.0 1.7 53 1017-1069 305-372 (381)
66 2c2l_A CHIP, carboxy terminus 97.7 2.3E-05 7.8E-10 85.7 4.9 46 1021-1070 209-255 (281)
67 2ecg_A Baculoviral IAP repeat- 97.6 1.8E-05 6.3E-10 70.3 2.7 43 1020-1070 25-68 (75)
68 1wim_A KIAA0161 protein; ring 97.6 3.9E-05 1.3E-09 71.1 4.0 48 1019-1067 4-61 (94)
69 2ea5_A Cell growth regulator w 97.6 3.2E-05 1.1E-09 67.8 3.2 46 1019-1072 14-60 (68)
70 1vyx_A ORF K3, K3RING; zinc-bi 97.5 3.9E-05 1.3E-09 65.7 3.3 50 1016-1069 2-58 (60)
71 2f42_A STIP1 homology and U-bo 97.5 7.4E-05 2.5E-09 77.6 5.3 46 1021-1070 107-153 (179)
72 2yho_A E3 ubiquitin-protein li 97.4 3.4E-05 1.2E-09 69.6 1.4 45 1020-1072 18-63 (79)
73 2yu4_A E3 SUMO-protein ligase 97.4 0.00012 4.1E-09 68.0 4.4 44 1020-1067 7-59 (94)
74 3htk_C E3 SUMO-protein ligase 97.1 0.00021 7.1E-09 78.0 3.3 47 1020-1069 181-231 (267)
75 3u9j_A F-BOX/LRR-repeat protei 97.0 0.0038 1.3E-07 60.9 11.1 148 41-190 7-156 (160)
76 3t6p_A Baculoviral IAP repeat- 97.0 0.00019 6.6E-09 81.9 2.0 43 1020-1070 295-338 (345)
77 2bay_A PRE-mRNA splicing facto 96.8 0.00073 2.5E-08 57.9 3.3 48 1020-1070 3-50 (61)
78 3vk6_A E3 ubiquitin-protein li 96.5 0.0016 5.4E-08 60.9 4.0 49 1022-1073 3-52 (101)
79 3nw0_A Non-structural maintena 95.4 0.0085 2.9E-07 64.9 4.0 45 1021-1068 181-227 (238)
80 3u9j_A F-BOX/LRR-repeat protei 93.3 0.62 2.1E-05 45.7 11.0 149 553-729 8-156 (160)
81 2ko5_A Ring finger protein Z; 91.7 0.068 2.3E-06 49.3 2.1 45 1020-1070 28-73 (99)
82 2kwj_A Zinc finger protein DPF 84.3 0.24 8.1E-06 47.5 0.6 84 980-1067 2-108 (114)
83 3v43_A Histone acetyltransfera 83.3 0.64 2.2E-05 44.4 3.1 72 992-1066 23-111 (112)
84 2jrp_A Putative cytoplasmic pr 82.2 0.41 1.4E-05 43.2 1.2 51 903-970 3-60 (81)
85 3a43_A HYPD, hydrogenase nicke 79.9 0.66 2.3E-05 46.1 1.9 36 1094-1129 67-121 (139)
86 2ysm_A Myeloid/lymphoid or mix 78.6 0.85 2.9E-05 43.3 2.2 43 1022-1065 56-102 (111)
87 2jne_A Hypothetical protein YF 75.2 0.84 2.9E-05 42.4 1.0 50 903-969 33-89 (101)
88 2kdx_A HYPA, hydrogenase/ureas 69.7 2 6.8E-05 41.3 2.3 37 1093-1131 69-106 (119)
89 2lbm_A Transcriptional regulat 69.2 5.6 0.00019 39.6 5.4 89 974-1066 12-116 (142)
90 3agt_A Hemerythrin-like domain 66.0 15 0.0005 35.7 7.8 52 111-168 16-67 (136)
91 2zjr_Z 50S ribosomal protein L 64.0 3.4 0.00012 35.2 2.3 32 1094-1130 27-58 (60)
92 2jun_A Midline-1; B-BOX, TRIM, 63.6 3.6 0.00012 37.8 2.7 34 1020-1055 3-38 (101)
93 4bbq_A Lysine-specific demethy 63.3 1.2 4.1E-05 42.5 -0.7 45 1021-1066 60-113 (117)
94 2cup_A Skeletal muscle LIM-pro 61.2 6.5 0.00022 35.9 4.0 40 1020-1069 5-44 (101)
95 3ql9_A Transcriptional regulat 60.0 7.4 0.00025 38.1 4.2 88 975-1066 7-110 (129)
96 2fiy_A Protein FDHE homolog; F 57.5 2.9 0.0001 46.8 1.1 24 1097-1124 208-231 (309)
97 2fiy_A Protein FDHE homolog; F 56.6 1.5 5.2E-05 49.1 -1.5 23 1045-1067 209-231 (309)
98 2ysm_A Myeloid/lymphoid or mix 56.5 7.6 0.00026 36.6 3.6 45 1019-1065 6-55 (111)
99 1x68_A FHL5 protein; four-and- 56.1 12 0.00041 32.4 4.6 67 1021-1121 6-74 (76)
100 3agt_A Hemerythrin-like domain 56.0 1.4E+02 0.0049 28.5 13.1 123 33-173 8-131 (136)
101 3v2d_5 50S ribosomal protein L 56.0 4.6 0.00016 34.4 1.8 29 1096-1129 29-57 (60)
102 1wil_A KIAA1045 protein; ring 55.1 9 0.00031 34.8 3.5 34 1019-1054 14-47 (89)
103 2g45_A Ubiquitin carboxyl-term 55.1 4.6 0.00016 39.6 1.8 58 1049-1125 2-61 (129)
104 3ihp_A Ubiquitin carboxyl-term 49.9 5.9 0.0002 50.3 2.1 68 1039-1125 173-242 (854)
105 3lqh_A Histone-lysine N-methyl 49.9 7.2 0.00025 40.4 2.4 49 1021-1070 3-66 (183)
106 2lf0_A Uncharacterized protein 49.2 35 0.0012 32.7 6.6 76 374-449 10-89 (123)
107 2i13_A AART; DNA binding, zinc 48.3 19 0.00067 35.9 5.4 72 993-1074 47-121 (190)
108 2jrp_A Putative cytoplasmic pr 47.9 5.2 0.00018 36.1 0.8 50 995-1075 18-68 (81)
109 4rxn_A Rubredoxin; electron tr 47.2 8.1 0.00028 32.3 1.8 14 959-972 1-15 (54)
110 2jne_A Hypothetical protein YF 46.5 5.1 0.00017 37.2 0.6 23 995-1029 48-70 (101)
111 1weo_A Cellulose synthase, cat 46.3 25 0.00085 32.2 5.0 54 1015-1068 11-68 (93)
112 2lri_C Autoimmune regulator; Z 45.9 13 0.00043 32.2 2.9 43 1020-1066 12-58 (66)
113 4ayb_P DNA-directed RNA polyme 44.5 10 0.00035 30.7 1.9 27 960-986 2-33 (48)
114 2i13_A AART; DNA binding, zinc 44.1 15 0.0005 36.8 3.7 114 974-1109 47-173 (190)
115 2v3b_B Rubredoxin 2, rubredoxi 43.5 11 0.00037 31.5 2.1 11 959-969 1-11 (55)
116 6rxn_A Rubredoxin; electron tr 42.3 10 0.00035 30.6 1.7 26 959-984 2-38 (46)
117 2kwj_A Zinc finger protein DPF 42.2 18 0.00061 34.4 3.7 33 1021-1053 2-40 (114)
118 1e8j_A Rubredoxin; iron-sulfur 41.8 13 0.00045 30.7 2.3 11 959-969 1-11 (52)
119 1g47_A Pinch protein; LIM doma 41.2 15 0.0005 31.7 2.7 42 1020-1071 11-52 (77)
120 1we9_A PHD finger family prote 40.6 5.8 0.0002 33.6 0.0 46 1020-1066 6-57 (64)
121 1x4l_A Skeletal muscle LIM-pro 40.2 17 0.00058 30.9 2.9 40 1020-1069 5-46 (72)
122 1x61_A Thyroid receptor intera 39.8 16 0.00055 31.0 2.7 40 1020-1069 5-44 (72)
123 2rgt_A Fusion of LIM/homeobox 39.6 20 0.00067 36.1 3.8 43 1020-1072 65-107 (169)
124 3v43_A Histone acetyltransfera 39.3 52 0.0018 31.0 6.4 26 1040-1065 30-62 (112)
125 1vq8_1 50S ribosomal protein L 38.9 14 0.00049 31.0 2.1 27 1093-1122 13-39 (57)
126 1x4k_A Skeletal muscle LIM-pro 38.2 17 0.00059 30.8 2.6 41 1021-1071 6-46 (72)
127 2kn9_A Rubredoxin; metalloprot 36.7 16 0.00055 33.0 2.2 14 958-971 24-38 (81)
128 3iz5_l 60S ribosomal protein L 36.6 16 0.00056 33.5 2.2 31 1093-1126 12-49 (94)
129 2dkt_A Ring finger and CHY zin 36.5 7.9 0.00027 38.6 0.2 30 959-988 96-127 (143)
130 1wyh_A SLIM 2, skeletal muscle 36.4 15 0.00053 31.1 2.0 40 1021-1070 6-45 (72)
131 2kmk_A Zinc finger protein GFI 36.4 17 0.00059 30.6 2.4 18 1057-1074 28-45 (82)
132 1dx8_A Rubredoxin; electron tr 36.0 14 0.00048 32.4 1.7 13 958-970 4-16 (70)
133 1wig_A KIAA1808 protein; LIM d 35.6 14 0.00049 31.8 1.7 38 1021-1070 6-43 (73)
134 4a18_A RPL37, ribosomal protei 35.2 17 0.00057 33.5 2.1 30 1093-1125 12-48 (94)
135 1twf_L ABC10-alpha, DNA-direct 35.0 17 0.00059 31.8 2.1 29 960-988 27-57 (70)
136 3kdw_A Putative sugar binding 34.9 2.9E+02 0.0099 29.0 11.4 54 167-221 113-166 (221)
137 2egq_A FHL1 protein; LIM domai 34.9 21 0.00072 30.7 2.7 40 1021-1070 16-58 (77)
138 1zfo_A LAsp-1; LIM domain, zin 34.8 13 0.00043 27.3 1.0 29 1020-1051 3-31 (31)
139 2ee8_A Protein ODD-skipped-rel 34.7 26 0.00088 31.3 3.4 18 1057-1074 44-61 (106)
140 1s24_A Rubredoxin 2; electron 33.7 15 0.00053 33.5 1.6 17 956-972 30-47 (87)
141 1b8t_A Protein (CRP1); LIM dom 33.0 9.3 0.00032 39.3 0.1 68 1020-1122 115-182 (192)
142 1x63_A Skeletal muscle LIM-pro 32.3 28 0.00095 30.3 3.1 41 1021-1071 16-56 (82)
143 2k16_A Transcription initiatio 32.2 19 0.00064 31.4 1.9 47 1021-1068 19-69 (75)
144 2dlq_A GLI-kruppel family memb 31.2 7.4 0.00025 35.7 -0.9 17 1058-1074 66-82 (124)
145 2hmq_A Hemerythrin; oxygen tra 30.7 98 0.0033 29.0 6.8 55 413-471 44-102 (113)
146 3f6q_B LIM and senescent cell 29.8 25 0.00086 29.5 2.3 42 1020-1071 11-52 (72)
147 2dlq_A GLI-kruppel family memb 29.7 33 0.0011 31.2 3.3 87 1020-1124 7-103 (124)
148 1f62_A Transcription factor WS 29.2 32 0.0011 27.6 2.7 44 1022-1066 2-49 (51)
149 3cc2_Z 50S ribosomal protein L 29.1 15 0.00051 35.3 0.7 31 959-989 58-91 (116)
150 3izc_m 60S ribosomal protein R 29.0 17 0.00057 33.6 1.0 30 960-989 35-67 (92)
151 2lbm_A Transcriptional regulat 28.8 29 0.001 34.5 2.8 65 933-1004 14-84 (142)
152 2d8x_A Protein pinch; LIM doma 28.7 31 0.0011 29.1 2.7 40 1020-1071 5-44 (70)
153 3uk3_C Zinc finger protein 217 28.5 34 0.0012 26.7 2.8 17 1058-1074 4-20 (57)
154 2gmg_A Hypothetical protein PF 28.4 27 0.00092 33.0 2.3 33 1095-1128 65-97 (105)
155 2hmq_A Hemerythrin; oxygen tra 28.3 85 0.0029 29.4 5.9 45 111-168 18-62 (113)
156 3iz5_m 60S ribosomal protein L 28.1 17 0.00058 33.5 0.9 30 960-989 35-67 (92)
157 1vq8_Z 50S ribosomal protein L 27.9 16 0.00053 33.2 0.6 29 961-989 27-58 (83)
158 2pv0_B DNA (cytosine-5)-methyl 27.8 42 0.0014 38.6 4.2 66 998-1067 70-148 (386)
159 3j21_e 50S ribosomal protein L 27.7 24 0.00083 30.1 1.7 24 1096-1122 16-39 (62)
160 1iml_A CRIP, cysteine rich int 27.1 23 0.00077 30.5 1.5 66 1022-1122 2-68 (76)
161 4a17_Y RPL37A, 60S ribosomal p 26.7 17 0.00059 34.1 0.7 31 959-989 34-67 (103)
162 2ehe_A Four and A half LIM dom 26.1 37 0.0013 29.5 2.8 58 1021-1106 16-73 (82)
163 2jvx_A NF-kappa-B essential mo 26.1 17 0.00059 26.3 0.4 17 1058-1074 3-19 (28)
164 2kdx_A HYPA, hydrogenase/ureas 26.0 32 0.0011 32.8 2.4 26 961-986 73-100 (119)
165 2cu8_A Cysteine-rich protein 2 26.0 35 0.0012 29.3 2.5 40 1020-1070 9-48 (76)
166 1nyp_A Pinch protein; LIM doma 25.8 23 0.00078 29.6 1.3 38 1021-1070 6-43 (66)
167 2mhr_A Myohemerythrin; oxygen 25.7 83 0.0028 29.7 5.3 45 111-168 18-62 (118)
168 2l3k_A Rhombotin-2, linker, LI 25.6 25 0.00084 33.5 1.6 72 1022-1126 10-81 (123)
169 3u5c_f 40S ribosomal protein S 25.6 35 0.0012 34.1 2.8 60 881-969 82-146 (152)
170 2cor_A Pinch protein; LIM doma 25.5 33 0.0011 29.9 2.3 40 1020-1071 15-54 (79)
171 2zkr_2 60S ribosomal protein L 25.3 37 0.0012 31.6 2.6 31 1093-1126 12-49 (97)
172 2ct0_A Non-SMC element 1 homol 24.9 41 0.0014 29.6 2.8 42 980-1029 16-61 (74)
173 2dmi_A Teashirt homolog 3; zin 24.8 55 0.0019 29.6 3.8 19 1057-1075 79-97 (115)
174 3alr_A Nanos protein; zinc-fin 24.8 22 0.00076 33.3 1.0 18 1010-1027 53-70 (106)
175 2dmd_A Zinc finger protein 64, 24.2 27 0.00092 30.5 1.5 17 1058-1074 36-52 (96)
176 2lt7_A Transcriptional regulat 24.2 36 0.0012 32.7 2.6 72 993-1074 20-94 (133)
177 1pft_A TFIIB, PFTFIIBN; N-term 24.1 22 0.00077 28.6 0.8 15 970-984 18-32 (50)
178 2e6s_A E3 ubiquitin-protein li 24.1 50 0.0017 29.3 3.2 44 1022-1066 28-76 (77)
179 3c5k_A HD6, histone deacetylas 24.0 25 0.00086 33.3 1.3 26 1098-1126 25-52 (109)
180 2ajj_A NS5A, nonstructural pro 23.7 82 0.0028 22.8 3.5 22 551-572 4-25 (28)
181 1yk4_A Rubredoxin, RD; electro 23.4 35 0.0012 28.2 1.8 11 974-984 33-43 (52)
182 3j21_i 50S ribosomal protein L 23.4 20 0.00069 32.5 0.4 16 974-989 51-66 (83)
183 3shb_A E3 ubiquitin-protein li 23.3 38 0.0013 30.1 2.3 26 1041-1066 46-76 (77)
184 2dj7_A Actin-binding LIM prote 23.3 42 0.0015 29.4 2.6 39 1020-1069 15-53 (80)
185 2co8_A NEDD9 interacting prote 23.2 41 0.0014 29.5 2.5 42 1019-1071 14-55 (82)
186 2dar_A PDZ and LIM domain prot 23.2 40 0.0014 30.0 2.5 41 1018-1070 23-63 (90)
187 2cur_A Skeletal muscle LIM-pro 22.9 43 0.0015 28.1 2.5 38 1020-1069 5-42 (69)
188 2l5u_A Chromodomain-helicase-D 22.8 40 0.0014 28.4 2.2 45 1018-1066 9-57 (61)
189 3u5n_A E3 ubiquitin-protein li 22.5 23 0.00078 37.1 0.7 45 1019-1067 6-54 (207)
190 3o70_A PHD finger protein 13; 22.2 18 0.00061 31.4 -0.1 46 1020-1067 19-67 (68)
191 2pv0_B DNA (cytosine-5)-methyl 22.2 26 0.00089 40.3 1.2 35 898-943 46-80 (386)
192 3pfq_A PKC-B, PKC-beta, protei 21.8 37 0.0013 41.6 2.5 83 962-1052 49-146 (674)
193 1bbo_A Human enhancer-binding 21.7 38 0.0013 26.4 1.8 16 1059-1074 2-17 (57)
194 3o36_A Transcription intermedi 21.7 30 0.001 35.4 1.4 44 1020-1067 4-51 (184)
195 3cw1_L U1 small nuclear ribonu 21.6 22 0.00077 31.7 0.4 12 959-970 1-12 (77)
196 3ask_A E3 ubiquitin-protein li 21.3 49 0.0017 35.4 3.0 26 1041-1066 194-224 (226)
197 2yt9_A Zinc finger-containing 21.0 40 0.0014 29.2 2.0 17 1058-1074 35-51 (95)
198 1x6a_A LIMK-2, LIM domain kina 20.8 42 0.0014 29.1 2.0 39 1021-1071 16-54 (81)
199 3asl_A E3 ubiquitin-protein li 20.7 57 0.0019 28.3 2.8 26 1041-1066 38-68 (70)
200 2k0a_A PRE-mRNA-splicing facto 20.5 41 0.0014 31.6 1.9 45 926-974 38-85 (109)
201 2xjy_A Rhombotin-2; oncoprotei 20.4 39 0.0013 32.1 1.8 41 1022-1072 68-108 (131)
202 3i2d_A E3 SUMO-protein ligase 20.2 1E+02 0.0035 35.3 5.4 48 1020-1070 249-300 (371)
203 3jyw_9 60S ribosomal protein L 20.1 48 0.0017 29.2 2.2 30 960-989 25-57 (72)
No 1
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=100.00 E-value=1.1e-48 Score=386.15 Aligned_cols=138 Identities=41% Similarity=0.990 Sum_probs=132.5
Q ss_pred CCCCCCCCcccCCCCCccccccccccccccCCcccChhhhcccCCCCCCccccceeeccccccccccCCCCCCCCCCCCc
Q 001136 879 DCYASYRDPEKQVFGCEHYKRNCKIRAACCGKLFTCRFCHDKASDHSMDRKATSEMMCMHCLKIQAIGPNCTTPSCNGLS 958 (1143)
Q Consensus 879 ~~~~~~~~~~~~~~gC~HY~r~c~l~~~cC~k~y~Cr~CHde~~~H~~~r~~~~~~~C~~C~~~q~~~~~C~~~~cc~~~ 958 (1143)
|..|+|+|++++++||+||+|+|+|+||||+||||||+||||.++|+++|+.+++|+||.|+++|++++.|++ ||..
T Consensus 4 ~~~~~~~~~~~~~~gC~HY~r~~~lr~pCC~k~y~Cr~CHde~~dH~l~r~~~~~vlCg~C~~~q~~~~~C~~---Cg~~ 80 (143)
T 2dkt_A 4 GSSGGVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHAQQTCED---CSTL 80 (143)
T ss_dssp CCCCCCCCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHTSSSCCCSSSCCCEEESSSCCEECSCSBCSS---SCCB
T ss_pred CCCCcccccccCcCCCcccCCCeeEECCCCCCccchhhhhccccccccchhccceeeecccCccccccCcCCC---CCcc
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999998 5999
Q ss_pred ceeEeccccccccCCCCcccCCCCCccccCCCCCccccccCCccccccccc-ccccccccccCC
Q 001136 959 MAKYYCNICKFFDDERTVYHCPFCNLCRVGGGLGVDFFHCMTCNCCLGLKL-LNHKCLEKCLET 1021 (1143)
Q Consensus 959 f~~y~C~~C~~~d~~~~~yhC~~CgiCr~g~~l~~~~~hC~~C~~C~~~~~-~~H~C~e~~~~~ 1021 (1143)
|++|||+||||||++|+||||++|||||+|+ |++||||++||+|+++++ ++|+|+|++++.
T Consensus 81 f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~--~~~ffHC~~C~~C~s~~l~~~H~C~e~~~~s 142 (143)
T 2dkt_A 81 FGEYYCSICHLFDKDKRQYHCESCGICRIGP--KEDFFHCLKCNLCLTTNLRGKHKCIESGPSS 142 (143)
T ss_dssp SCSEECSSSCCEECSSSEEEETTTTEEEESC--GGGEEEETTTTEEEEGGGSSSSCCSCCCSCC
T ss_pred ceeeEeceeecccCCCceecCCCCCceeccC--CcCcEECCcCCeeeccccCcCcccCccCccC
Confidence 9999999999999889999999999999997 599999999999999999 899999998764
No 2
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=99.87 E-value=1.2e-23 Score=189.99 Aligned_cols=72 Identities=38% Similarity=0.636 Sum_probs=38.2
Q ss_pred CcCCCccccchhhhhhhhHHHHhhcCCChhhhcCcceEEcCCCCCCCcccchhhcccCCCCCCccccccccC
Q 001136 1061 CPICSKSLGDMAIYFGMIDALLAAEELPEEYRNQVQDILCNDCEQKGAARFHWLYHKCGFCGSYNTRLIKND 1132 (1143)
Q Consensus 1061 CPiCr~s~~~m~~~~~~ld~~i~~~p~P~~y~~~~~~i~CndC~~~s~~~~h~l~~kC~~C~syNt~~~~~~ 1132 (1143)
||+|+|++.||+.+|++||++|+++|||++|+++.+.|+||||++++.++|||+||||++|+||||++++-.
T Consensus 1 ~~~c~ks~~dm~~~~~~lD~~ia~~pmP~~y~~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNTr~~~G~ 72 (79)
T 2k2d_A 1 GSHMMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGGR 72 (79)
T ss_dssp --------------------------------CCEEEEEESSSCCEEEEECCTTCCCCTTTSCCCEEESCCC
T ss_pred CCcccccHHHHHHHHHHHHHHHHhCCCCHHHhCCEeEEECCCCCCCccCCceeecccCcCCCCcCeEecCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999998644
No 3
>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis}
Probab=99.70 E-value=2e-16 Score=163.23 Aligned_cols=152 Identities=14% Similarity=0.192 Sum_probs=129.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHhhcC-C-CcccHHHHHHHHHHHHHHhcccCccccccchHHHhhhcc---hHH
Q 001136 37 DDDSPILIFCFFHKAVRNELDALHQLAMNFAT-G-HRVDILSLSERYRFLHSVYKHHSNAEDEVIFPALDIRVK---NVA 111 (1143)
Q Consensus 37 ~~~~Pi~~m~~~H~aLRreL~~L~~la~~~~~-g-d~~~~~~L~~~~~~l~~~L~~HH~~EDevLFPaL~~R~p---~vl 111 (1143)
.+..||+.+...|+.+|+.+..|..++..+.. | +......+...+.+|...+..||.+||++|||.|+++.+ +++
T Consensus 13 ~~~~~i~~L~~~H~~i~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Hh~~EE~~lfP~l~~~~~~~~~~i 92 (172)
T 2p0n_A 13 TFAEPIEMLYACHGKVRRFCGQVAMLSDYIAENGCNQIVLQTIRQIAQYFNVAAPLHHEDEEENFFPLLLQYAPQAQESV 92 (172)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCGGGHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHChhHHHHhhHHHHhhCchhhHHH
Confidence 56789999999999999999999998887642 2 223346788889999999999999999999999988765 578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccCCHHHHHHHHHHHHhc
Q 001136 112 RKYSLEHEGESNLFDHLFQLLNSYTQNDESFPKELASCSRALQTSINQHMSKEEQQVFPLLTQHFSLEEQASLVWQFFCS 191 (1143)
Q Consensus 112 ~~le~EH~~i~~ll~~L~~~l~~~~~~~~~~~~eLa~~l~~l~~~L~~HL~~EE~~lfPLa~~~LS~eEw~~L~~~f~~s 191 (1143)
+.|..||..+..++++|...+..+..+..... ....+..|.+.+.+|+.+||+ +||.+.+.||+++|.+|+.+|.+.
T Consensus 93 ~~l~~EH~~~~~~l~~l~~~l~~~~~~~~~~~--~~~~l~~~~~~l~~Hi~~EE~-lfP~a~~~L~~~~~~~l~~~~~~r 169 (172)
T 2p0n_A 93 DELLRQHIGLHDNWAAVSAEFAKLEADNAYVP--DEEAFKRFVAGYDVHLAIEEP-LFDMGNTFIPKEKLTEIGEIMAAR 169 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCC--CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc--cHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999999999999998888766543211 236789999999999999999 999999999999999999998754
No 4
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=99.45 E-value=5.2e-13 Score=153.81 Aligned_cols=153 Identities=20% Similarity=0.224 Sum_probs=131.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-----ccHHHHHHHHHHHHHHhcccCccccccchHHHhhh-cchHH
Q 001136 38 DDSPILIFCFFHKAVRNELDALHQLAMNFATGHR-----VDILSLSERYRFLHSVYKHHSNAEDEVIFPALDIR-VKNVA 111 (1143)
Q Consensus 38 ~~~Pi~~m~~~H~aLRreL~~L~~la~~~~~gd~-----~~~~~L~~~~~~l~~~L~~HH~~EDevLFPaL~~R-~p~vl 111 (1143)
.-.|+..|...|++|++.|..|..++.++..+.. .....+.+.+.+|..+...||.+||++|||+|.++ .++++
T Consensus 7 ~ghpi~~l~~EH~~i~~~l~~l~~~~~~i~~~~~~~~~~~~~~~l~~~~~~l~~l~~~H~~kEE~~LFP~le~~g~~~p~ 86 (369)
T 3cax_A 7 EGHPLKTLYQENKEIMKDAEMLNLYAKTLATTKDERMREEILGVLEEIVSSLRMVGFTHYNREEMLIFPYIERRGLTVIA 86 (369)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHTHHHHHTTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHhhhhhHhhhhHHHHHhCCCCCC
Confidence 4679999999999999999999999999876553 57788888899996644388888888999999654 34788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCC-CCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccCCHHHHHHHHHHHHh
Q 001136 112 RKYSLEHEGESNLFDHLFQLLNSYTQND-ESFPKELASCSRALQTSINQHMSKEEQQVFPLLTQHFSLEEQASLVWQFFC 190 (1143)
Q Consensus 112 ~~le~EH~~i~~ll~~L~~~l~~~~~~~-~~~~~eLa~~l~~l~~~L~~HL~~EE~~lfPLa~~~LS~eEw~~L~~~f~~ 190 (1143)
..|..||.++..++.++.++++....++ ......+...+..|...+.+|+.+||.+|||++.+.||++||..|..++..
T Consensus 87 ~vM~~eHd~~r~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~Hi~kEe~iLfP~a~~~ls~~dw~~i~~~~~e 166 (369)
T 3cax_A 87 TVLWTKHDEIRAMIKQLAELLRKREEMPWEEFVEKFKAKAGEVAFALSDMVFRENNIFYPTLKALLSEGEWKAIKMQEDE 166 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHGGG
T ss_pred chHHHHhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcCcc
Confidence 9999999999999999999998765322 123678899999999999999999999999999999999999999987764
No 5
>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis}
Probab=99.43 E-value=8.8e-13 Score=135.98 Aligned_cols=145 Identities=14% Similarity=0.123 Sum_probs=121.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCc-ccHHHHHHHHHHHHHHhhhhhhccccccccccccc--------c
Q 001136 300 GTYPIDEILLWHNAIRQELNEIAEESRKIQLSGDF-TNLLAFNERLQFIAEVLIFHCIAEVNVIFPAVDGA--------S 370 (1143)
Q Consensus 300 ~~~Pi~~l~~~H~AiR~EL~~l~~~a~~~~~~~~~-~~L~~L~~r~~f~~~vl~~Hs~aED~vlFPaL~~~--------~ 370 (1143)
...||+.|..-|+.||+.|..|.+.+..+...+.. ..+..++.-+.+|+..+..||..||++|||+|.+. .
T Consensus 14 ~~~~i~~L~~~H~~i~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Hh~~EE~~lfP~l~~~~~~~~~~i~ 93 (172)
T 2p0n_A 14 FAEPIEMLYACHGKVRRFCGQVAMLSDYIAENGCNQIVLQTIRQIAQYFNVAAPLHHEDEEENFFPLLLQYAPQAQESVD 93 (172)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCGGGHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHChhHHHHhhHHHHhhCchhhHHHH
Confidence 36799999999999999999999998887543332 22478888999999999999999999999999762 2
Q ss_pred cchhhhHHHHhHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCHHHHHHHHHH
Q 001136 371 SFSQKHAEEESQFNDFRLLIESIQNEGAISTSAEFYAKLCSHADQIMETIERHFHKVEVQVLPLARNHFSFKRQREILYQ 450 (1143)
Q Consensus 371 ~~~~EH~~i~~~~~~f~~ll~~~~~~~~~~~~~~~~~~L~~~l~~l~~~L~~Hf~kEE~qvfPL~~k~~S~eEQ~~L~~~ 450 (1143)
.|..||..+...++.+...+..+.++..... ....+..+...+..|+.+||+ |||++++.||.++|++|+-+
T Consensus 94 ~l~~EH~~~~~~l~~l~~~l~~~~~~~~~~~-------~~~~l~~~~~~l~~Hi~~EE~-lfP~a~~~L~~~~~~~l~~~ 165 (172)
T 2p0n_A 94 ELLRQHIGLHDNWAAVSAEFAKLEADNAYVP-------DEEAFKRFVAGYDVHLAIEEP-LFDMGNTFIPKEKLTEIGEI 165 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTCCC-------CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc-------cHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCHHHHHHHHHH
Confidence 8889999999999999988887765442111 126678899999999999999 99999999999999999877
Q ss_pred Hh
Q 001136 451 SL 452 (1143)
Q Consensus 451 ~l 452 (1143)
+.
T Consensus 166 ~~ 167 (172)
T 2p0n_A 166 MA 167 (172)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 6
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=99.14 E-value=1.9e-10 Score=132.56 Aligned_cols=146 Identities=15% Similarity=0.167 Sum_probs=124.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhccCC----cccHHHHHHHHHHHHHHhh-hhhhccccccccccccc------
Q 001136 301 TYPIDEILLWHNAIRQELNEIAEESRKIQLSGD----FTNLLAFNERLQFIAEVLI-FHCIAEVNVIFPAVDGA------ 369 (1143)
Q Consensus 301 ~~Pi~~l~~~H~AiR~EL~~l~~~a~~~~~~~~----~~~L~~L~~r~~f~~~vl~-~Hs~aED~vlFPaL~~~------ 369 (1143)
-+||..|..=|+.|++.|..|...+.++..... ...+..+++-+.+|.+ +. .|+..|+.+|||+|.+.
T Consensus 8 ghpi~~l~~EH~~i~~~l~~l~~~~~~i~~~~~~~~~~~~~~~l~~~~~~l~~-l~~~H~~kEE~~LFP~le~~g~~~p~ 86 (369)
T 3cax_A 8 GHPLKTLYQENKEIMKDAEMLNLYAKTLATTKDERMREEILGVLEEIVSSLRM-VGFTHYNREEMLIFPYIERRGLTVIA 86 (369)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTH-HHHTHHHHHHHHTHHHHHTTTCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHH-HHHHhhhhhHhhhhHHHHHhCCCCCC
Confidence 589999999999999999999999999874433 2467999999999976 55 89999999999999652
Q ss_pred ccchhhhHHHHhHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCHHHHHHHHH
Q 001136 370 SSFSQKHAEEESQFNDFRLLIESIQNEGAISTSAEFYAKLCSHADQIMETIERHFHKVEVQVLPLARNHFSFKRQREILY 449 (1143)
Q Consensus 370 ~~~~~EH~~i~~~~~~f~~ll~~~~~~~~~~~~~~~~~~L~~~l~~l~~~L~~Hf~kEE~qvfPL~~k~~S~eEQ~~L~~ 449 (1143)
..|..||.++..++..+..++..... .+. ++....+...+..+...|.+|+.|||+.|||++.+.||.++|+.+.-
T Consensus 87 ~vM~~eHd~~r~~l~~l~~~~~~~~~-~~~---~~~~~~~~~~l~~~~~~l~~Hi~kEe~iLfP~a~~~ls~~dw~~i~~ 162 (369)
T 3cax_A 87 TVLWTKHDEIRAMIKQLAELLRKREE-MPW---EEFVEKFKAKAGEVAFALSDMVFRENNIFYPTLKALLSEGEWKAIKM 162 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTGGG-SCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHH
T ss_pred chHHHHhHHHHHHHHHHHHHHhcccc-cch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 28999999999999999999876432 110 24467889999999999999999999999999999999999998876
Q ss_pred HH
Q 001136 450 QS 451 (1143)
Q Consensus 450 ~~ 451 (1143)
++
T Consensus 163 ~~ 164 (369)
T 3cax_A 163 QE 164 (369)
T ss_dssp HG
T ss_pred cC
Confidence 54
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=4.7e-11 Score=108.48 Aligned_cols=49 Identities=20% Similarity=0.512 Sum_probs=40.3
Q ss_pred CCCCcccccccccCCcceEec-CCCCccchhhHHHHhccCCCCcCCCcccc
Q 001136 1020 ETNCPICCDFLFTSSETVRAL-PCGHYMHLACFQAYTCSHYTCPICSKSLG 1069 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~l-pCgH~fH~~Ci~~wl~~~~~CPiCr~s~~ 1069 (1143)
+..|+||+++ +.....+..+ +|||.||.+||.+|+..+.+||+||+++.
T Consensus 26 ~~~C~iC~~~-~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 26 MDACLRCQAE-NKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp TSCCTTHHHH-TCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred hccCcccccc-cCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 3679999998 4444544444 59999999999999999999999999875
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.07 E-value=8e-11 Score=98.18 Aligned_cols=52 Identities=35% Similarity=0.844 Sum_probs=45.6
Q ss_pred ccCCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCcccc
Q 001136 1018 CLETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLG 1069 (1143)
Q Consensus 1018 ~~~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~ 1069 (1143)
+....|+||++.+.++...+..++|||.||..|+.+|+..+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 3467899999996666677888999999999999999988899999998764
No 9
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.03 E-value=1.3e-10 Score=96.94 Aligned_cols=49 Identities=35% Similarity=0.817 Sum_probs=42.7
Q ss_pred CCCCcccccccccCCcceEecC-CCCccchhhHHHHhccCCCCcCCCcccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALP-CGHYMHLACFQAYTCSHYTCPICSKSLG 1069 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lp-CgH~fH~~Ci~~wl~~~~~CPiCr~s~~ 1069 (1143)
...|+||+++ |.++..+..++ |||.||..|+.+|+..+.+||+||+.+.
T Consensus 5 ~~~C~IC~~~-~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAE-LEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCC-CCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCcCccCCcc-ccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4679999998 66666677787 9999999999999999999999998763
No 10
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=1.4e-10 Score=102.84 Aligned_cols=56 Identities=25% Similarity=0.623 Sum_probs=48.4
Q ss_pred ccccCCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccchh
Q 001136 1016 EKCLETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDMA 1072 (1143)
Q Consensus 1016 e~~~~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~m~ 1072 (1143)
+......|+||++. |.....+..+||||.||..|+.+|+..+.+||+||+.+..+.
T Consensus 11 ~~~~~~~C~IC~~~-~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 11 ELNLHELCAVCLED-FKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCCSCBCSSSCCB-CCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred cCCCCCCCcCCCcc-cCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 44556789999998 777777788899999999999999988899999999987654
No 11
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=1e-10 Score=104.13 Aligned_cols=53 Identities=34% Similarity=0.723 Sum_probs=46.3
Q ss_pred ccCCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccch
Q 001136 1018 CLETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDM 1071 (1143)
Q Consensus 1018 ~~~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~m 1071 (1143)
.....|+||+++ |.....+..+||||.||..|+.+|+..+.+||+||+.+...
T Consensus 21 ~~~~~C~IC~~~-~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCD-FESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEE-CCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcc-cCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 345679999998 67777888899999999999999999899999999988643
No 12
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.99 E-value=2.4e-10 Score=99.90 Aligned_cols=52 Identities=33% Similarity=0.790 Sum_probs=45.2
Q ss_pred cccCCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCcccc
Q 001136 1017 KCLETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLG 1069 (1143)
Q Consensus 1017 ~~~~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~ 1069 (1143)
......|+||++. |.....+..+||||.||..|+.+|+..+.+||+||+.+.
T Consensus 11 ~~~~~~C~IC~~~-~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 11 EDTEEKCTICLSI-LEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp TTCCCSBTTTTBC-CCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred CCCCCCCeeCCcc-ccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 3445789999998 666677888999999999999999998999999998875
No 13
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.96 E-value=2.5e-10 Score=105.79 Aligned_cols=50 Identities=34% Similarity=0.875 Sum_probs=44.5
Q ss_pred cCCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCcccc
Q 001136 1019 LETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLG 1069 (1143)
Q Consensus 1019 ~~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~ 1069 (1143)
.+..|+||++. |..+..+..+||||.||..|+..|+..+.+||+||+.+.
T Consensus 39 ~~~~C~IC~~~-~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSE-YVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SCSEETTTTEE-CCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCCCcccChh-hcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 45679999998 666677888999999999999999999999999998875
No 14
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.91 E-value=6.5e-10 Score=99.54 Aligned_cols=51 Identities=37% Similarity=0.881 Sum_probs=45.1
Q ss_pred cCCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccc
Q 001136 1019 LETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGD 1070 (1143)
Q Consensus 1019 ~~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~ 1070 (1143)
....|+||++. |.....+..++|||.||..|+.+|+..+.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~-~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 14 SGLECPVCKED-YALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSCCCTTTTSC-CCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCeeCCcc-ccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 35689999998 6777778889999999999999999989999999998864
No 15
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.88 E-value=9.7e-10 Score=105.03 Aligned_cols=48 Identities=21% Similarity=0.405 Sum_probs=38.6
Q ss_pred CCCccccccccc---CCcceEecCCCCccchhhHHHHhccCCCCcCCCccc
Q 001136 1021 TNCPICCDFLFT---SSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSL 1068 (1143)
Q Consensus 1021 ~~CpIC~e~lf~---s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~ 1068 (1143)
..|++|+++... ....+..++|||.||.+||.+|+..+.+||+||+.+
T Consensus 49 ~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 49 DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp SCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 568888765322 233567889999999999999999999999999875
No 16
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.87 E-value=1.1e-09 Score=105.20 Aligned_cols=54 Identities=31% Similarity=0.609 Sum_probs=42.1
Q ss_pred ccCCCCcccccccccCC--------------cceEecCCCCccchhhHHHHh-----ccCCCCcCCCccccch
Q 001136 1018 CLETNCPICCDFLFTSS--------------ETVRALPCGHYMHLACFQAYT-----CSHYTCPICSKSLGDM 1071 (1143)
Q Consensus 1018 ~~~~~CpIC~e~lf~s~--------------~~v~~lpCgH~fH~~Ci~~wl-----~~~~~CPiCr~s~~~m 1071 (1143)
..+..|+||++++.... ..+..++|||.||..||..|+ ..+.+||+||+.+...
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 34568999999953321 244578999999999999999 4578999999988643
No 17
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.80 E-value=1.8e-09 Score=94.53 Aligned_cols=53 Identities=26% Similarity=0.582 Sum_probs=43.8
Q ss_pred ccCCCCcccccccccC---CcceEecCCCCccchhhHHHHhccCCCCcCCCccccc
Q 001136 1018 CLETNCPICCDFLFTS---SETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGD 1070 (1143)
Q Consensus 1018 ~~~~~CpIC~e~lf~s---~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~ 1070 (1143)
.....|+||++.+... ...+..++|||.||..|+.+|+..+.+||+||+.+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 3456799999985332 3555789999999999999999989999999998864
No 18
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=2.1e-09 Score=93.46 Aligned_cols=51 Identities=27% Similarity=0.602 Sum_probs=42.3
Q ss_pred cCCCCcccccccccC---CcceEecCCCCccchhhHHHHhccCCCCcCCCcccc
Q 001136 1019 LETNCPICCDFLFTS---SETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLG 1069 (1143)
Q Consensus 1019 ~~~~CpIC~e~lf~s---~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~ 1069 (1143)
....|+||++.+... ...+..++|||.||..|+..|+..+.+||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 356799999985432 344577899999999999999988999999998874
No 19
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.77 E-value=3e-09 Score=90.98 Aligned_cols=51 Identities=27% Similarity=0.638 Sum_probs=42.6
Q ss_pred CCCCccccccccc---CCcceEecCCCCccchhhHHHHhccCCCCcCCCccccc
Q 001136 1020 ETNCPICCDFLFT---SSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGD 1070 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~---s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~ 1070 (1143)
...||||++.+.. +...+..++|||.||..|+.+|+..+.+||+||+.+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 4679999998433 23455778999999999999999889999999998864
No 20
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.73 E-value=5e-09 Score=91.17 Aligned_cols=49 Identities=29% Similarity=0.681 Sum_probs=41.9
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccch
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDM 1071 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~m 1071 (1143)
...|+||++. +. .++..+||||.||..|+..|+..+.+||+||+.+...
T Consensus 5 ~~~C~IC~~~-~~--~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 5 AERCPICLED-PS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCSSCCSC-CC--SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCCeeCCcc-cc--CCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 5679999998 33 3457899999999999999999899999999988643
No 21
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=2.2e-09 Score=94.03 Aligned_cols=51 Identities=29% Similarity=0.604 Sum_probs=42.8
Q ss_pred cCCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccchhhh
Q 001136 1019 LETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDMAIY 1074 (1143)
Q Consensus 1019 ~~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~m~~~ 1074 (1143)
....|+||++. +.. ..+||||.||..|+.+|+..+.+||+||+.+...+..
T Consensus 14 ~~~~C~IC~~~-~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 64 (70)
T 2ecn_A 14 DEEECCICMDG-RAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANES 64 (70)
T ss_dssp CCCCCSSSCCS-CCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCC
T ss_pred CCCCCeeCCcC-ccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCcc
Confidence 35679999998 443 6789999999999999999999999999988755433
No 22
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.63 E-value=1.9e-08 Score=86.88 Aligned_cols=51 Identities=24% Similarity=0.492 Sum_probs=40.1
Q ss_pred CCCCccccc-ccccCCcceEecCCCCccchhhHHHHh-ccCCCCcCCCccccc
Q 001136 1020 ETNCPICCD-FLFTSSETVRALPCGHYMHLACFQAYT-CSHYTCPICSKSLGD 1070 (1143)
Q Consensus 1020 ~~~CpIC~e-~lf~s~~~v~~lpCgH~fH~~Ci~~wl-~~~~~CPiCr~s~~~ 1070 (1143)
+..||||++ .+.........++|||.||..|+.+|+ ....+||+||+.+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 467999999 643444444668999999999999995 445789999998853
No 23
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=1.8e-08 Score=91.78 Aligned_cols=51 Identities=29% Similarity=0.626 Sum_probs=41.3
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhccC---CCCcCCCccccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSH---YTCPICSKSLGD 1070 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~---~~CPiCr~s~~~ 1070 (1143)
...||||++.+..+......++|||.||..|+..|+..+ .+||+||+.+..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 457999999844333346778999999999999998765 899999998753
No 24
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=1.4e-08 Score=89.42 Aligned_cols=48 Identities=21% Similarity=0.571 Sum_probs=40.2
Q ss_pred cCCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccc
Q 001136 1019 LETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGD 1070 (1143)
Q Consensus 1019 ~~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~ 1070 (1143)
....|+||++. +.. ...++|||.||..|+..|+..+.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~-~~~---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQT-CVH---PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSB-CSS---EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCccCCcc-cCC---CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 35679999998 322 3567999999999999999888999999998853
No 25
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.62 E-value=4.5e-09 Score=102.05 Aligned_cols=49 Identities=24% Similarity=0.580 Sum_probs=0.5
Q ss_pred CCCCccccccccc--------------CCcceEecCCCCccchhhHHHHhccCCCCcCCCccc
Q 001136 1020 ETNCPICCDFLFT--------------SSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSL 1068 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~--------------s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~ 1068 (1143)
.++|+||++++-. ....+..++|||.||.+||.+|+..+.+||+||+++
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp C--------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 4678888887422 112445579999999999999999999999999875
No 26
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=2.4e-08 Score=88.14 Aligned_cols=48 Identities=19% Similarity=0.439 Sum_probs=40.1
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGD 1070 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~ 1070 (1143)
...||||++. |.+ ++..++|||.||..|+..|+..+.+||+||+.+..
T Consensus 15 ~~~C~IC~~~-~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 15 YILCSICKGY-LID--ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp GGSCTTTSSC-CSS--CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCCCCChH-HHC--cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 4579999998 333 44445999999999999999889999999998864
No 27
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=4.6e-08 Score=88.24 Aligned_cols=46 Identities=26% Similarity=0.540 Sum_probs=39.4
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCcccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLG 1069 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~ 1069 (1143)
...||||++. |.. + ..++|||.||..|+..|+....+||+||+.+.
T Consensus 15 ~~~C~IC~~~-~~~--p-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQA-FQN--P-VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSB-CCS--E-EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCcCCCch-hcC--e-eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4579999998 432 3 45899999999999999988999999999985
No 28
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.55 E-value=3e-08 Score=98.77 Aligned_cols=47 Identities=28% Similarity=0.742 Sum_probs=40.1
Q ss_pred CCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccch
Q 001136 1021 TNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDM 1071 (1143)
Q Consensus 1021 ~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~m 1071 (1143)
..||||++. |.. ...+||||.||..|+..|+..+.+||+||+++...
T Consensus 54 ~~C~iC~~~-~~~---~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 54 LQCIICSEY-FIE---AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp SBCTTTCSB-CSS---EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred CCCcccCcc-cCC---ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 469999998 432 35689999999999999999999999999999644
No 29
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.52 E-value=3.3e-08 Score=89.28 Aligned_cols=59 Identities=17% Similarity=0.480 Sum_probs=44.2
Q ss_pred cCCCCcccccccccCCcceEec--CCCCccchhhHHHHh-ccCCCCcCCCccccchhhhhhhhH
Q 001136 1019 LETNCPICCDFLFTSSETVRAL--PCGHYMHLACFQAYT-CSHYTCPICSKSLGDMAIYFGMID 1079 (1143)
Q Consensus 1019 ~~~~CpIC~e~lf~s~~~v~~l--pCgH~fH~~Ci~~wl-~~~~~CPiCr~s~~~m~~~~~~ld 1079 (1143)
.+.+||||++. ++.. ....+ +|||.|+..|+..+. ...+.||+||+.+......|+.++
T Consensus 10 ~~~~CpICle~-~~~~-d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~~~~ 71 (78)
T 1e4u_A 10 DPVECPLCMEP-LEID-DINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKPLS 71 (78)
T ss_dssp CCCBCTTTCCB-CCTT-TTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCCSCC
T ss_pred cCCcCCccCcc-Cccc-cccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhccCC
Confidence 35689999997 4322 22334 599999999999976 456899999999988776665543
No 30
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=4.9e-08 Score=88.64 Aligned_cols=51 Identities=25% Similarity=0.550 Sum_probs=41.2
Q ss_pred cccCCCCcccccccccCCcceEecCCC-----CccchhhHHHHhccC--CCCcCCCcccc
Q 001136 1017 KCLETNCPICCDFLFTSSETVRALPCG-----HYMHLACFQAYTCSH--YTCPICSKSLG 1069 (1143)
Q Consensus 1017 ~~~~~~CpIC~e~lf~s~~~v~~lpCg-----H~fH~~Ci~~wl~~~--~~CPiCr~s~~ 1069 (1143)
......|+||+++ |.....+ ++||+ |.||..||++|+..+ .+||+||..+.
T Consensus 12 ~~~~~~C~IC~~~-~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 12 PSSQDICRICHCE-GDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CTTSCCCSSSCCC-CCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCeEcCcc-ccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 3445789999998 6655555 68996 999999999998654 59999998874
No 31
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.49 E-value=6e-08 Score=86.15 Aligned_cols=51 Identities=27% Similarity=0.552 Sum_probs=40.2
Q ss_pred CCCCcccccccccCCcceEecC-CCCccchhhHHHHhccC--CCCcCCCccccchhhh
Q 001136 1020 ETNCPICCDFLFTSSETVRALP-CGHYMHLACFQAYTCSH--YTCPICSKSLGDMAIY 1074 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lp-CgH~fH~~Ci~~wl~~~--~~CPiCr~s~~~m~~~ 1074 (1143)
+..||||++. |.+ + ..++ |||.||..|+..|+..+ .+||+||+.+...+..
T Consensus 15 ~~~C~IC~~~-~~~--p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2yur_A 15 ELLCLICKDI-MTD--A-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDAL 68 (74)
T ss_dssp GGSCSSSCCC-CTT--C-EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTT
T ss_pred CCCCcCCChH-HhC--C-eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcccc
Confidence 4579999987 433 3 4488 99999999999999754 7899999987655443
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.47 E-value=8.6e-08 Score=90.26 Aligned_cols=48 Identities=19% Similarity=0.497 Sum_probs=40.1
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhccC-CCCcCCCccccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSH-YTCPICSKSLGD 1070 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~-~~CPiCr~s~~~ 1070 (1143)
...||||++. |. .++..++|||.||..||..|+... .+||+||+++..
T Consensus 22 ~~~C~IC~~~-~~--~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEK-LR--DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSB-CS--SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCcc-cc--CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 4579999998 43 355559999999999999999877 799999999854
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.46 E-value=8.3e-08 Score=89.86 Aligned_cols=48 Identities=21% Similarity=0.626 Sum_probs=40.2
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGD 1070 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~ 1070 (1143)
...||||++. |.+ ++..++|||.||..|+..|+..+.+||+||+.+..
T Consensus 22 ~~~C~IC~~~-~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEY-FNI--AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSB-CSS--EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChh-hCC--cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 4579999998 433 44445999999999999999988999999998864
No 34
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.46 E-value=6.3e-08 Score=94.41 Aligned_cols=53 Identities=26% Similarity=0.573 Sum_probs=43.7
Q ss_pred cCCCCcccccccccC---CcceEecCCCCccchhhHHHHhccCCCCcCCCccccch
Q 001136 1019 LETNCPICCDFLFTS---SETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDM 1071 (1143)
Q Consensus 1019 ~~~~CpIC~e~lf~s---~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~m 1071 (1143)
....||||++.+... +..+..++|||.||..|+.+|+..+.+||+||+.+...
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 356799999984332 35557899999999999999999999999999988643
No 35
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=1.1e-07 Score=83.73 Aligned_cols=47 Identities=32% Similarity=0.808 Sum_probs=38.4
Q ss_pred cCCCCcccccccccCCcceEecCCCCccchhhHHHHhc---cCCCCcCCCcccc
Q 001136 1019 LETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTC---SHYTCPICSKSLG 1069 (1143)
Q Consensus 1019 ~~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~---~~~~CPiCr~s~~ 1069 (1143)
....||||++. |.. ...++|||.||..|+..|+. ...+||+||+.+.
T Consensus 19 ~~~~C~IC~~~-~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 19 EEVICPICLDI-LQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCBCTTTCSB-CSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred cCCEeccCCcc-cCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 35679999997 432 35579999999999999986 4678999999875
No 36
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=9.5e-08 Score=82.76 Aligned_cols=47 Identities=26% Similarity=0.566 Sum_probs=38.1
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHh-ccCCCCcCCCccccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYT-CSHYTCPICSKSLGD 1070 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl-~~~~~CPiCr~s~~~ 1070 (1143)
...||||++. +.+ + ..++|||.||..|+.+|+ ..+.+||+||+.+..
T Consensus 15 ~~~C~IC~~~-~~~--p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 15 KYKCEKCHLV-LCS--P-KQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CEECTTTCCE-ESS--C-CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCCCCCCChH-hcC--e-eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 4569999988 433 2 237999999999999999 456899999998864
No 37
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.43 E-value=1.3e-07 Score=84.46 Aligned_cols=47 Identities=21% Similarity=0.416 Sum_probs=39.0
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhcc-CCCCcCCCccccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCS-HYTCPICSKSLGD 1070 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~-~~~CPiCr~s~~~ 1070 (1143)
+..||||++. |.+ + ..++|||.||..|+.+|+.. +.+||+||+.+..
T Consensus 8 ~~~C~IC~~~-~~~--P-v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 8 YFRCPISLEL-MKD--P-VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSCTTTSCC-CSS--E-EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cCCCCCcccc-ccC--C-EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 4679999987 433 3 45799999999999999976 7899999998854
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.37 E-value=2.2e-07 Score=88.47 Aligned_cols=48 Identities=23% Similarity=0.631 Sum_probs=40.7
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGD 1070 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~ 1070 (1143)
...||||++. |. .++..++|||.||..|+..|+..+.+||+||+.+..
T Consensus 15 ~~~C~IC~~~-~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGY-FI--DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSB-CS--SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCCccCChH-Hh--CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 5679999997 43 355556999999999999999988999999999864
No 39
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.36 E-value=2.7e-07 Score=94.38 Aligned_cols=48 Identities=31% Similarity=0.629 Sum_probs=39.9
Q ss_pred CCCcccccccccCCcceEecCCCCccchhhHHHHhcc-CCCCcCCCccccch
Q 001136 1021 TNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCS-HYTCPICSKSLGDM 1071 (1143)
Q Consensus 1021 ~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~-~~~CPiCr~s~~~m 1071 (1143)
..||||++. |.+ ++..++|||.||..|+..|+.. +.+||+||+.+...
T Consensus 55 ~~C~IC~~~-~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 55 LMCPICLDM-LKN--TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 103 (165)
T ss_dssp HBCTTTSSB-CSS--EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred CCCcccChH-hhC--cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence 479999998 443 5555699999999999999976 78899999998543
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.36 E-value=2.2e-07 Score=90.57 Aligned_cols=54 Identities=26% Similarity=0.579 Sum_probs=43.5
Q ss_pred ccCCCCccccccccc---CCcceEecCCCCccchhhHHHHhccCCCCcCCCccccch
Q 001136 1018 CLETNCPICCDFLFT---SSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDM 1071 (1143)
Q Consensus 1018 ~~~~~CpIC~e~lf~---s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~m 1071 (1143)
.....|+||++.+.. .......++|||.||..|+.+|+..+.+||+||+++..-
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 345679999998432 134456789999999999999999999999999988643
No 41
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.33 E-value=2.4e-07 Score=90.32 Aligned_cols=47 Identities=21% Similarity=0.536 Sum_probs=38.4
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhcc-CCCCcCCCccccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCS-HYTCPICSKSLGD 1070 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~-~~~CPiCr~s~~~ 1070 (1143)
...||||++. |.. ...+||||.||..|+..|+.. ..+||+||+.+..
T Consensus 52 ~~~C~IC~~~-~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQEL-VFR---PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSB-CSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChH-HcC---cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4579999997 432 345799999999999999864 4699999999965
No 42
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.32 E-value=2.7e-07 Score=83.04 Aligned_cols=46 Identities=28% Similarity=0.673 Sum_probs=38.3
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhcc------CCCCcCCCcccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCS------HYTCPICSKSLG 1069 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~------~~~CPiCr~s~~ 1069 (1143)
...||||++. |.. + ..++|||.||..|+..|+.. ..+||+||+.+.
T Consensus 19 ~~~C~IC~~~-~~~--p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 19 EVTCPICLEL-LKE--P-VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TTSCTTTCSC-CSS--C-EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred CCCCcCCChh-hCc--c-eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 4579999998 433 2 36899999999999999866 788999999875
No 43
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.32 E-value=1.1e-07 Score=84.84 Aligned_cols=47 Identities=34% Similarity=0.792 Sum_probs=38.5
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhcc-------CCCCcCCCccccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCS-------HYTCPICSKSLGD 1070 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~-------~~~CPiCr~s~~~ 1070 (1143)
...||||++. |.+ + ..++|||.||..|+..|+.. ..+||+||+.+..
T Consensus 12 ~~~C~IC~~~-~~~--p-~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 12 EVTCPICLEL-LTE--P-LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCEETTTTEE-CSS--C-CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCCcCCCcc-cCC--e-eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4679999998 443 2 34799999999999999865 6789999998853
No 44
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=3.2e-07 Score=76.95 Aligned_cols=41 Identities=27% Similarity=0.910 Sum_probs=33.4
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHh---ccCCCCcCC
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYT---CSHYTCPIC 1064 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl---~~~~~CPiC 1064 (1143)
...|+||++. +.+. ..++|||.||..|+.+|+ ....+||+|
T Consensus 15 ~~~C~IC~~~-~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 15 EASCSVCLEY-LKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCBCSSSCCB-CSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCCCccCCcc-cCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4679999998 4332 448999999999999994 457899998
No 45
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=3.9e-07 Score=78.07 Aligned_cols=41 Identities=34% Similarity=0.923 Sum_probs=33.7
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhc---cCCCCcCC
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTC---SHYTCPIC 1064 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~---~~~~CPiC 1064 (1143)
...||||++. |.+ ...++|||.||..|+.+|+. ...+||+|
T Consensus 20 ~~~C~IC~~~-~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 20 EVICPICLDI-LQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCBCTTTCSB-CSS---CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCCCCcCCch-hCC---eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4679999997 432 34579999999999999986 46789998
No 46
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=3.1e-07 Score=82.63 Aligned_cols=47 Identities=36% Similarity=0.806 Sum_probs=38.8
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhcc------CCCCcCCCccccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCS------HYTCPICSKSLGD 1070 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~------~~~CPiCr~s~~~ 1070 (1143)
...||||++. |.+ ...++|||.||..|+..|+.. ..+||+||+.+..
T Consensus 19 ~~~C~IC~~~-~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 19 EVTCPICLEL-LTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCTTTCSC-CSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCcc-cCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 4679999998 433 245799999999999999866 7899999998863
No 47
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.25 E-value=4.7e-07 Score=80.92 Aligned_cols=47 Identities=32% Similarity=0.671 Sum_probs=37.9
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhccC--CCCcCCCcccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSH--YTCPICSKSLG 1069 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~--~~CPiCr~s~~ 1069 (1143)
..+|+||.+.+ .... ....|||.||.+||.+|++++ .+||+|+....
T Consensus 15 i~~C~IC~~~i-~~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLL-IQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBC-SSSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCcCcchhhHc-ccCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 46799999874 4433 334899999999999999877 89999998764
No 48
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.20 E-value=6.8e-07 Score=90.42 Aligned_cols=48 Identities=23% Similarity=0.555 Sum_probs=38.8
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhccC-CCCcCCCccccch
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSH-YTCPICSKSLGDM 1071 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~-~~CPiCr~s~~~m 1071 (1143)
...||||++. |.. + ..+||||.||..|+..|+... .+||+||..+..-
T Consensus 78 ~~~C~IC~~~-~~~--p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQEL-VYQ--P-VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSB-CSS--E-EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChh-hcC--C-EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3579999997 432 3 448999999999999999765 5899999998643
No 49
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.20 E-value=3.6e-07 Score=87.79 Aligned_cols=47 Identities=32% Similarity=0.807 Sum_probs=38.4
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhcc-CCCCcCCCccccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCS-HYTCPICSKSLGD 1070 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~-~~~CPiCr~s~~~ 1070 (1143)
+..||||++.+. . ...++|||.||..|+..|+.. ..+||+||+.+..
T Consensus 15 ~~~C~iC~~~~~-~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILV-E---PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCS-S---CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccC-c---eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 356999998843 2 245799999999999999865 6899999999854
No 50
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.18 E-value=5.7e-07 Score=87.04 Aligned_cols=49 Identities=27% Similarity=0.544 Sum_probs=39.2
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhccC-CCCcCCCccccchh
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSH-YTCPICSKSLGDMA 1072 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~-~~CPiCr~s~~~m~ 1072 (1143)
...||||++. +.. + ..++|||.||..|+..|+..+ .+||+||+.+...+
T Consensus 18 ~~~C~IC~~~-~~~--p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 18 KYECPICLMA-LRE--A-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp GGBCTTTCSB-CSS--E-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCcCChh-hcC--e-EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 3579999987 332 2 457999999999999998765 49999999987543
No 51
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.18 E-value=7.1e-07 Score=82.17 Aligned_cols=46 Identities=30% Similarity=0.637 Sum_probs=37.2
Q ss_pred CCCCcccccccccCCcceEecC-CCCccchhhHHHHhcc--CCCCcCCCcccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALP-CGHYMHLACFQAYTCS--HYTCPICSKSLG 1069 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lp-CgH~fH~~Ci~~wl~~--~~~CPiCr~s~~ 1069 (1143)
+..||||++. |.+ + ..+| |||.|+..|+..|+.. ..+||+||+.+.
T Consensus 13 ~~~C~IC~~~-~~~--p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 13 ELLCLICKDI-MTD--A-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTEETTTTEE-CSS--C-EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCCCCCCChh-hcC--c-eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4579999987 432 2 4678 9999999999999853 479999999973
No 52
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.14 E-value=1.1e-06 Score=83.71 Aligned_cols=47 Identities=21% Similarity=0.639 Sum_probs=37.7
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhccC---CCCcCCCccccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSH---YTCPICSKSLGD 1070 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~---~~CPiCr~s~~~ 1070 (1143)
...||||++. |.+ + ..++|||.||..|+..|+..+ .+||+||..+..
T Consensus 21 ~~~C~IC~~~-~~~--p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLEL-IKE--P-VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCC-CSS--C-CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChh-hcC--e-EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 4579999997 433 2 347999999999999998654 589999998853
No 53
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.10 E-value=8.6e-07 Score=76.79 Aligned_cols=53 Identities=17% Similarity=0.343 Sum_probs=40.5
Q ss_pred ccccCCCCcccccccccCCcceE-ecCCCCc-cchhhHHHHhccCCCCcCCCccccch
Q 001136 1016 EKCLETNCPICCDFLFTSSETVR-ALPCGHY-MHLACFQAYTCSHYTCPICSKSLGDM 1071 (1143)
Q Consensus 1016 e~~~~~~CpIC~e~lf~s~~~v~-~lpCgH~-fH~~Ci~~wl~~~~~CPiCr~s~~~m 1071 (1143)
....+..|+||++. + .+.+. .+||||. |...|+..|...+.+||+||+.+...
T Consensus 4 ~~~~~~~C~IC~~~-~--~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 58 (64)
T 2vje_A 4 PLNAIEPCVICQGR-P--KNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMI 58 (64)
T ss_dssp -CGGGSCCTTTSSS-C--SCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEE
T ss_pred CCCCcCCCCcCCCC-C--CCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhce
Confidence 34456789999987 2 22222 2499999 79999999998889999999988643
No 54
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.09 E-value=1.7e-06 Score=83.25 Aligned_cols=48 Identities=19% Similarity=0.420 Sum_probs=39.3
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhcc-CCCCcCCCccccch
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCS-HYTCPICSKSLGDM 1071 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~-~~~CPiCr~s~~~m 1071 (1143)
...||||++. |. .+ ..++|||.||..|+..|+.. +.+||+||+.+...
T Consensus 23 ~~~C~IC~~~-~~--~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHI-LA--DP-VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSB-CS--SE-EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcH-hc--Cc-EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 4579999987 43 23 44899999999999999976 78999999998653
No 55
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.01 E-value=4.1e-06 Score=76.60 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=39.5
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGD 1070 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~ 1070 (1143)
+-.||||++. |.+ .+.++|||+|...||..|+..+.+||+|+..+..
T Consensus 14 ~~~CpI~~~~-m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 14 EFRDPLMDTL-MTD---PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTBCTTTCSB-CSS---EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred heECcccCch-hcC---CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 4579999987 433 3568899999999999999888999999998854
No 56
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.01 E-value=1.6e-06 Score=74.85 Aligned_cols=51 Identities=22% Similarity=0.436 Sum_probs=39.7
Q ss_pred ccCCCCcccccccccCCcc-eEecCCCCc-cchhhHHHHhccCCCCcCCCccccch
Q 001136 1018 CLETNCPICCDFLFTSSET-VRALPCGHY-MHLACFQAYTCSHYTCPICSKSLGDM 1071 (1143)
Q Consensus 1018 ~~~~~CpIC~e~lf~s~~~-v~~lpCgH~-fH~~Ci~~wl~~~~~CPiCr~s~~~m 1071 (1143)
.....|+||++. + ... +..+||||. |...|+..|...+.+||+||+.+...
T Consensus 5 ~~~~~C~IC~~~-~--~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 57 (63)
T 2vje_B 5 NLLKPCSLCEKR-P--RDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLV 57 (63)
T ss_dssp GGGSBCTTTSSS-B--SCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEE
T ss_pred CcCCCCcccCCc-C--CCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhce
Confidence 345789999986 2 222 223499998 99999999988888999999988643
No 57
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.97 E-value=5.3e-06 Score=85.11 Aligned_cols=49 Identities=29% Similarity=0.558 Sum_probs=39.0
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhccC-CCCcCCCccccchh
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSH-YTCPICSKSLGDMA 1072 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~-~~CPiCr~s~~~m~ 1072 (1143)
...||||++.+ .+ + ..++|||.|+..|+.+|+... .+||+||..+...+
T Consensus 18 ~~~C~IC~~~~-~~--p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 18 KYECPICLMAL-RE--A-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (170)
T ss_dssp GGBCTTTCSBC-SS--E-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCChhh-cC--c-EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhh
Confidence 45799999974 32 3 447999999999999998654 59999999987543
No 58
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.97 E-value=1.9e-06 Score=72.53 Aligned_cols=44 Identities=27% Similarity=0.566 Sum_probs=35.6
Q ss_pred cCCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCcccc
Q 001136 1019 LETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLG 1069 (1143)
Q Consensus 1019 ~~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~ 1069 (1143)
....|+||++. |.+ ...+||||.|+..|+..| ..+||+||+.+.
T Consensus 5 ~~~~C~IC~~~-~~~---p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 5 QFLRCQQCQAE-AKC---PKLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CCSSCSSSCSS-CBC---CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred cCCCceEeCCc-cCC---eEEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence 45679999987 443 256899999999999874 678999998874
No 59
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.96 E-value=5.1e-06 Score=78.43 Aligned_cols=47 Identities=21% Similarity=0.233 Sum_probs=39.5
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGD 1070 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~ 1070 (1143)
+-.||||++. |.+ .+.++|||+|...||..|+..+.+||+|+.++..
T Consensus 29 ~~~CpI~~~~-m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 29 EFRDPLMDTL-MTD---PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp TTBCTTTCSB-CSS---EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred hhCCcCccCc-ccC---CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 4579999987 433 2557899999999999999888999999998864
No 60
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.94 E-value=4.1e-06 Score=96.40 Aligned_cols=48 Identities=27% Similarity=0.660 Sum_probs=40.3
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhc-cCCCCcCCCccccch
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTC-SHYTCPICSKSLGDM 1071 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~-~~~~CPiCr~s~~~m 1071 (1143)
...|+||++. + .....+||||.||..|+..|+. ...+||+||..+...
T Consensus 332 ~~~C~ICle~-~---~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAEN-D---KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSS-B---CCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcC-C---CCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 4689999987 3 3356789999999999999997 678999999988643
No 61
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.91 E-value=8.4e-06 Score=76.64 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=39.6
Q ss_pred CCCCcccccccccCCcceEecCCC-CccchhhHHHHhccCCCCcCCCccccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCG-HYMHLACFQAYTCSHYTCPICSKSLGD 1070 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCg-H~fH~~Ci~~wl~~~~~CPiCr~s~~~ 1070 (1143)
+-.||||++. |.+ + +.++|| |+|...||.+|+..+.+||+|+..+..
T Consensus 22 ~~~CpI~~~~-m~d--P-V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 22 EFLDPIMSTL-MCD--P-VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp TTBCTTTCSB-CSS--E-EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred hcCCcCcccc-ccC--C-eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 4579999987 433 2 458999 999999999999888999999999864
No 62
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.89 E-value=3.6e-06 Score=81.24 Aligned_cols=45 Identities=20% Similarity=0.463 Sum_probs=36.7
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCcccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLG 1069 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~ 1069 (1143)
...||||++. |.+ ++...+|||.|+..|+..|+. .+||+||+.+.
T Consensus 22 ~~~C~IC~~~-~~~--pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNI-LRE--PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSC-CSS--CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred CCCCCCCChH-hhC--ccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 5679999987 432 333339999999999999987 88999999984
No 63
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.87 E-value=3.5e-06 Score=74.96 Aligned_cols=44 Identities=32% Similarity=0.653 Sum_probs=36.4
Q ss_pred CCCCcccccccccCCcceEecCCCCc-cchhhHHHHhccCCCCcCCCccccch
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHY-MHLACFQAYTCSHYTCPICSKSLGDM 1071 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~-fH~~Ci~~wl~~~~~CPiCr~s~~~m 1071 (1143)
+..|+||++. + .....+||||. |+..|+..| .+||+||+.+...
T Consensus 24 ~~~C~iC~~~-~---~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 24 EKLCKICMDR-N---IAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFK 68 (74)
T ss_dssp HTBCTTTSSS-B---CCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred CCCCCCCCCC-C---CCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence 4679999987 3 23466899999 999999998 8999999988643
No 64
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.82 E-value=3.6e-06 Score=84.26 Aligned_cols=45 Identities=22% Similarity=0.477 Sum_probs=36.5
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhccC-CCCcCCCccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSH-YTCPICSKSL 1068 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~-~~CPiCr~s~ 1068 (1143)
+..||||++.+ .. + ..++|||.|+..||..|+... .+||+||+.+
T Consensus 31 ~~~C~IC~~~~-~~--p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 31 KYLCSACRNVL-RR--P-FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGBCTTTCSBC-SS--E-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCCCCCChhh-cC--c-EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 45799999874 32 3 447999999999999998755 5899999865
No 65
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.73 E-value=7.2e-06 Score=91.96 Aligned_cols=53 Identities=23% Similarity=0.543 Sum_probs=39.0
Q ss_pred cccCCCCcccccccccCCc-ce---EecCCCCccchhhHHHHhccC-----------CCCcCCCcccc
Q 001136 1017 KCLETNCPICCDFLFTSSE-TV---RALPCGHYMHLACFQAYTCSH-----------YTCPICSKSLG 1069 (1143)
Q Consensus 1017 ~~~~~~CpIC~e~lf~s~~-~v---~~lpCgH~fH~~Ci~~wl~~~-----------~~CPiCr~s~~ 1069 (1143)
......|+||++.+..++. +. ...+|||.||..|+.+|+.+. .+||.||+++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 3456789999998544232 21 235799999999999998542 57999999774
No 66
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.69 E-value=2.3e-05 Score=85.74 Aligned_cols=46 Identities=11% Similarity=0.057 Sum_probs=37.0
Q ss_pred CCCcccccccccCCcceEecCCCCccchhhHHHHhcc-CCCCcCCCccccc
Q 001136 1021 TNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCS-HYTCPICSKSLGD 1070 (1143)
Q Consensus 1021 ~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~-~~~CPiCr~s~~~ 1070 (1143)
-.||||++. |.+ + +.+||||+|+..||..|+.. ..+||+|+.++..
T Consensus 209 ~~c~i~~~~-~~d--P-v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 209 LCGKISFEL-MRE--P-CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp TBCTTTCSB-CSS--E-EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cCCcCcCCH-hcC--C-eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 459999987 433 3 45889999999999999865 4569999999853
No 67
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=1.8e-05 Score=70.31 Aligned_cols=43 Identities=33% Similarity=0.688 Sum_probs=34.6
Q ss_pred CCCCcccccccccCCcceEecCCCCc-cchhhHHHHhccCCCCcCCCccccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHY-MHLACFQAYTCSHYTCPICSKSLGD 1070 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~-fH~~Ci~~wl~~~~~CPiCr~s~~~ 1070 (1143)
...|+||++. +. ....+||||. |+..|+.. ..+||+||+.+..
T Consensus 25 ~~~C~IC~~~-~~---~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDR-NI---AIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSS-CC---CBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCC-CC---CEEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 4579999987 32 2456899999 99999965 4789999998865
No 68
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.57 E-value=3.9e-05 Score=71.07 Aligned_cols=48 Identities=19% Similarity=0.522 Sum_probs=37.2
Q ss_pred cCCCCcccccccccCCcceEecCCCCccchhhHHHHhcc--------CCCCcC--CCcc
Q 001136 1019 LETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCS--------HYTCPI--CSKS 1067 (1143)
Q Consensus 1019 ~~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~--------~~~CPi--Cr~s 1067 (1143)
....|+||+++ |.....+...+|||.|+..|+..|+.. ..+||. |+..
T Consensus 4 ~~~~C~IC~~~-~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGE-YPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCC-CBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcc-cccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 34679999998 555444444589999999999998642 257999 9988
No 69
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=3.2e-05 Score=67.78 Aligned_cols=46 Identities=22% Similarity=0.561 Sum_probs=37.2
Q ss_pred cCCCCcccccccccCCcceEecCCCCc-cchhhHHHHhccCCCCcCCCccccchh
Q 001136 1019 LETNCPICCDFLFTSSETVRALPCGHY-MHLACFQAYTCSHYTCPICSKSLGDMA 1072 (1143)
Q Consensus 1019 ~~~~CpIC~e~lf~s~~~v~~lpCgH~-fH~~Ci~~wl~~~~~CPiCr~s~~~m~ 1072 (1143)
....|+||++. ...+..+||||. |+..|+.. ..+||+||..+...-
T Consensus 14 ~~~~C~IC~~~----~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~~ 60 (68)
T 2ea5_A 14 NSKDCVVCQNG----TVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQESF 60 (68)
T ss_dssp CSSCCSSSSSS----CCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCEE
T ss_pred CCCCCCCcCcC----CCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhceE
Confidence 35679999986 234677999999 99999984 579999999986543
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.55 E-value=3.9e-05 Score=65.74 Aligned_cols=50 Identities=22% Similarity=0.454 Sum_probs=37.4
Q ss_pred ccccCCCCcccccccccCCcceEecCCC--C---ccchhhHHHHhc--cCCCCcCCCcccc
Q 001136 1016 EKCLETNCPICCDFLFTSSETVRALPCG--H---YMHLACFQAYTC--SHYTCPICSKSLG 1069 (1143)
Q Consensus 1016 e~~~~~~CpIC~e~lf~s~~~v~~lpCg--H---~fH~~Ci~~wl~--~~~~CPiCr~s~~ 1069 (1143)
|......|.||+++ .+.++ .+||. + .||..|+.+|+. .+.+||+|+..+.
T Consensus 2 e~~~~~~CrIC~~~---~~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 2 EDEDVPVCWICNEE---LGNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp TTCSCCEETTTTEE---CSCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCEeEEeecC---CCCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 34456789999987 22333 58865 4 999999999985 4688999998763
No 71
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.49 E-value=7.4e-05 Score=77.60 Aligned_cols=46 Identities=11% Similarity=0.047 Sum_probs=36.8
Q ss_pred CCCcccccccccCCcceEecCCCCccchhhHHHHhcc-CCCCcCCCccccc
Q 001136 1021 TNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCS-HYTCPICSKSLGD 1070 (1143)
Q Consensus 1021 ~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~-~~~CPiCr~s~~~ 1070 (1143)
-.||||++. |.+ | +.+||||+|...||..|+.. +.+||+|+.++..
T Consensus 107 f~CPI~~el-m~D--P-V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 107 LCGKISFEL-MRE--P-CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp GBCTTTCSB-CSS--E-EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred hcccCcccc-CCC--C-eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 359999987 433 3 45699999999999999865 3579999998854
No 72
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.42 E-value=3.4e-05 Score=69.57 Aligned_cols=45 Identities=24% Similarity=0.667 Sum_probs=36.5
Q ss_pred CCCCcccccccccCCcceEecCCCCc-cchhhHHHHhccCCCCcCCCccccchh
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHY-MHLACFQAYTCSHYTCPICSKSLGDMA 1072 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~-fH~~Ci~~wl~~~~~CPiCr~s~~~m~ 1072 (1143)
...|+||++. + ..+..+||||. |...|+..| ..||+||..+...-
T Consensus 18 ~~~C~IC~~~-~---~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~ 63 (79)
T 2yho_A 18 AMLCMVCCEE-E---INSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHVQ 63 (79)
T ss_dssp HTBCTTTSSS-B---CCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEEE
T ss_pred CCEeEEeCcc-c---CcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCeE
Confidence 4579999986 2 34577899999 999999876 39999999987543
No 73
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.36 E-value=0.00012 Score=68.03 Aligned_cols=44 Identities=27% Similarity=0.477 Sum_probs=34.7
Q ss_pred CCCCcccccccccCCcceEec-CCCCccchhhHHHHhcc------CCCCcC--CCcc
Q 001136 1020 ETNCPICCDFLFTSSETVRAL-PCGHYMHLACFQAYTCS------HYTCPI--CSKS 1067 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~l-pCgH~fH~~Ci~~wl~~------~~~CPi--Cr~s 1067 (1143)
+-.||||++. |.+ +| .+ .|||+|...||..|+.. ..+||+ |++.
T Consensus 7 ~~~CPI~~~~-~~d--PV-~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 7 GFTCPITKEE-MKK--PV-KNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CCBCTTTCSB-CSS--EE-EESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred EeECcCcCch-hcC--CE-EcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4569999987 443 44 45 49999999999999864 369999 9866
No 74
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.00021 Score=77.98 Aligned_cols=47 Identities=28% Similarity=0.628 Sum_probs=38.9
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhccC--CCCcC--CCcccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSH--YTCPI--CSKSLG 1069 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~--~~CPi--Cr~s~~ 1069 (1143)
+-.||||++. | ..+|....|||.|...||..|+..+ .+||+ |++.+.
T Consensus 181 el~CPIcl~~-f--~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 181 ELTCPITCKP-Y--EAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CSBCTTTSSB-C--SSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeECcCccCc-c--cCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 4579999998 4 4567767999999999999998643 57999 999874
No 75
>3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A
Probab=97.04 E-value=0.0038 Score=60.87 Aligned_cols=148 Identities=18% Similarity=0.213 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHhcccCccccccchHHHhhhcchHHHHHHHHHHH
Q 001136 41 PILIFCFFHKAVRNELDALHQLAMNFATGHRVDILSLSERYRFLHSVYKHHSNAEDEVIFPALDIRVKNVARKYSLEHEG 120 (1143)
Q Consensus 41 Pi~~m~~~H~aLRreL~~L~~la~~~~~gd~~~~~~L~~~~~~l~~~L~~HH~~EDevLFPaL~~R~p~vl~~le~EH~~ 120 (1143)
-++.+..-|..+++..+.--..+....-.+..+...+..-+..-....+.|-..|+++|--.|.+|...|-. -+-|..
T Consensus 7 EvdvF~~PH~RMKqlvg~y~ekLS~tnFs~n~d~~~lL~sl~~tF~EfK~HEqIENe~I~~~LqqRs~tV~n--vHsdnk 84 (160)
T 3u9j_A 7 EVDVFTAPHWRMKQLVGLYCDKLSKTNFSNNNDFRALLQSLYATFKEFKMHEQIENEYIIGLLQQRSQTIYN--VHSDNK 84 (160)
T ss_dssp GGCSSHHHHHHHHHHHHHHHHHHHHCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCCCSS--CSCCTT
T ss_pred ccceeeccHHHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec--ccCcch
Confidence 346677788888888777666655544333334444444443334457889999999999999988431000 001111
Q ss_pred HHHHHHHHHHHHhhhccCCC--CchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccCCHHHHHHHHHHHHh
Q 001136 121 ESNLFDHLFQLLNSYTQNDE--SFPKELASCSRALQTSINQHMSKEEQQVFPLLTQHFSLEEQASLVWQFFC 190 (1143)
Q Consensus 121 i~~ll~~L~~~l~~~~~~~~--~~~~eLa~~l~~l~~~L~~HL~~EE~~lfPLa~~~LS~eEw~~L~~~f~~ 190 (1143)
+.+.+.=++..+........ .....|..++.+|......||..||++.-|++.++||.+|+..|-.+.++
T Consensus 85 LsemL~L~~kG~~~vK~e~e~lny~~qLk~~l~~Ft~~flPhMkeEEEVFQPmLMeyFtyeELk~iK~~Vi~ 156 (160)
T 3u9j_A 85 LSEMLSLFEKGLKNVKNEYEQLNYAKQLKERLEAFTRDFLPHMKEEEEVFQPMLMEYFTYEELKDIKKKVIA 156 (160)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 22222223333322210000 23467889999999999999999999999999999999999998777553
No 76
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.99 E-value=0.00019 Score=81.85 Aligned_cols=43 Identities=33% Similarity=0.772 Sum_probs=35.7
Q ss_pred CCCCcccccccccCCcceEecCCCCc-cchhhHHHHhccCCCCcCCCccccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHY-MHLACFQAYTCSHYTCPICSKSLGD 1070 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~-fH~~Ci~~wl~~~~~CPiCr~s~~~ 1070 (1143)
+..|+||++. + .....+||||. |+..|+..| ..||+||..+..
T Consensus 295 ~~~C~IC~~~-~---~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDK-E---VSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSS-B---CCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCccCCc-C---CceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 4679999987 3 23466799999 999999988 789999998854
No 77
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.76 E-value=0.00073 Score=57.94 Aligned_cols=48 Identities=15% Similarity=0.148 Sum_probs=38.8
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGD 1070 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~ 1070 (1143)
...||||++. +. ++|...+|||+|-+.||.+|+..+.+||++++.+..
T Consensus 3 ~~~CpIs~~~-m~--dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKV-PR--RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSC-CS--SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred eEEecCCCCC-CC--CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 3569999987 43 344444899999999999999888899999998854
No 78
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.52 E-value=0.0016 Score=60.90 Aligned_cols=49 Identities=22% Similarity=0.393 Sum_probs=38.8
Q ss_pred CCcccccccccCCcceEecCCCCccchhhHHHHhc-cCCCCcCCCccccchhh
Q 001136 1022 NCPICCDFLFTSSETVRALPCGHYMHLACFQAYTC-SHYTCPICSKSLGDMAI 1073 (1143)
Q Consensus 1022 ~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~-~~~~CPiCr~s~~~m~~ 1073 (1143)
-|++|.-+ -....+.+||+|+|+.+|+..|.+ +..+||+|+.++.+.+.
T Consensus 3 fC~~C~~P---i~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLP---IKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSB---CSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCC---eEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 37777755 233457899999999999999974 56899999999987654
No 79
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.41 E-value=0.0085 Score=64.93 Aligned_cols=45 Identities=33% Similarity=0.715 Sum_probs=32.5
Q ss_pred CCCcccccccccCCcceEecCCCCccchhhHHHHhccC--CCCcCCCccc
Q 001136 1021 TNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSH--YTCPICSKSL 1068 (1143)
Q Consensus 1021 ~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~--~~CPiCr~s~ 1068 (1143)
..|.||.+-+. .+ .....|+|.||.+|+..|++++ .+||.|+...
T Consensus 181 ~~C~iC~~iv~-~g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 181 KICNICHSLLI-QG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp CBCTTTCSBCS-SC--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CcCcchhhHHh-CC--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 34777776543 22 2333499999999999998664 5999999765
No 80
>3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A
Probab=93.25 E-value=0.62 Score=45.68 Aligned_cols=149 Identities=13% Similarity=0.192 Sum_probs=106.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccchhhh
Q 001136 553 IDTIFKFHKAISKDLEYLDMESAKLSDCDETFLRQFIGRFRLLWGLYRAHSNAEDEIVFPALESKEALHNVSHSYTLDHK 632 (1143)
Q Consensus 553 iD~i~~~HkAiRkdL~~l~~~~~~l~~~D~~~l~~~~~R~~~l~~v~~~Hs~aED~ivfPALe~~~~~~~vs~s~~~dH~ 632 (1143)
+|..-.=|--.+.-..+--+.+...+-+|-.++++++.-+.-.-.-+..|-.-|++.|--.|..|.. +.-.=|.
T Consensus 8 vdvF~~PH~RMKqlvg~y~ekLS~tnFs~n~d~~~lL~sl~~tF~EfK~HEqIENe~I~~~LqqRs~------tV~nvHs 81 (160)
T 3u9j_A 8 VDVFTAPHWRMKQLVGLYCDKLSKTNFSNNNDFRALLQSLYATFKEFKMHEQIENEYIIGLLQQRSQ------TIYNVHS 81 (160)
T ss_dssp GCSSHHHHHHHHHHHHHHHHHHHHCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHC------CCSSCSC
T ss_pred cceeeccHHHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------ceecccC
Confidence 5666666777766666666777777777888888888888777788889999999999999998732 2222221
Q ss_pred hHHHHHHHHHHHHHHHhhhhhcCCCCCcccccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhhHHh
Q 001136 633 QEEKLFEDISCVLSEVSQLHESLPNADSEKEDKFSADYGSDNRRKYNELATKLQGMCKSIKVTLDQHILGEELELWPLFG 712 (1143)
Q Consensus 633 ~ee~lf~~I~~lL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kL~~~~~~~~~~l~~H~~~EE~e~~PL~~ 712 (1143)
+..+-++-.++...-.. +. + . ...-....+|...++.|-.....||..||...=|++-
T Consensus 82 --dnkLsemL~L~~kG~~~---vK--------------~-e--~e~lny~~qLk~~l~~Ft~~flPhMkeEEEVFQPmLM 139 (160)
T 3u9j_A 82 --DNKLSEMLSLFEKGLKN---VK--------------N-E--YEQLNYAKQLKERLEAFTRDFLPHMKEEEEVFQPMLM 139 (160)
T ss_dssp --CTTHHHHHHHHHHHHHH---CC--------------S-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred --cchHHHHHHHHHHHHhh---cc--------------h-H--HHHhhHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 23344444444432211 11 0 1 1123466888899999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHh
Q 001136 713 RHFSVEEQDKIVGRIIG 729 (1143)
Q Consensus 713 ~hfS~~Eq~~l~~~~l~ 729 (1143)
+|||-+|.+.|=.+.|+
T Consensus 140 eyFtyeELk~iK~~Vi~ 156 (160)
T 3u9j_A 140 EYFTYEELKDIKKKVIA 156 (160)
T ss_dssp HHSCHHHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHH
Confidence 99999999998766554
No 81
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=91.69 E-value=0.068 Score=49.25 Aligned_cols=45 Identities=27% Similarity=0.615 Sum_probs=36.8
Q ss_pred CCCCcccccccccCCcceEecCCC-CccchhhHHHHhccCCCCcCCCccccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCG-HYMHLACFQAYTCSHYTCPICSKSLGD 1070 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCg-H~fH~~Ci~~wl~~~~~CPiCr~s~~~ 1070 (1143)
..+|-.|.-. .. ..+.|. |+++..|++-.+..+..||||+++++.
T Consensus 28 ~~nCKsCWf~---~k---~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 28 PQFCKSCWFE---NK---GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp CCCCCSSCSC---CS---SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred cccChhhccc---cC---CeeeecchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 5689999843 33 235676 999999999999999999999999964
No 82
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=84.34 E-value=0.24 Score=47.52 Aligned_cols=84 Identities=21% Similarity=0.636 Sum_probs=50.8
Q ss_pred CCCCccccCC------CCCccccccCCcc-----ccccccc--------ccccccccccCCCCcccccccccCCcceEec
Q 001136 980 PFCNLCRVGG------GLGVDFFHCMTCN-----CCLGLKL--------LNHKCLEKCLETNCPICCDFLFTSSETVRAL 1040 (1143)
Q Consensus 980 ~~CgiCr~g~------~l~~~~~hC~~C~-----~C~~~~~--------~~H~C~e~~~~~~CpIC~e~lf~s~~~v~~l 1040 (1143)
+.|+||..|. |-+++...|+.|+ .|+.... ....|.+= ..|.||... -....-+.--
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~~C~~~-~~~~~ll~Cd 77 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC---KSCILCGTS-ENDDQLLFCD 77 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGG---CCCTTTTCC-TTTTTEEECS
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCcccc---CccCccccc-CCCCceEEcC
Confidence 4677777654 3346778888887 4655431 24444432 358888764 2222333334
Q ss_pred CCCCccchhhHHHHh----ccCCCCcCCCcc
Q 001136 1041 PCGHYMHLACFQAYT----CSHYTCPICSKS 1067 (1143)
Q Consensus 1041 pCgH~fH~~Ci~~wl----~~~~~CPiCr~s 1067 (1143)
.|...||..|+.+=+ ...-.||.|...
T Consensus 78 ~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 78 DCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp SSCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCccccccccCCCccCCCCCCeECccccch
Confidence 699999999998532 234668888643
No 83
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=83.29 E-value=0.64 Score=44.35 Aligned_cols=72 Identities=22% Similarity=0.590 Sum_probs=40.9
Q ss_pred CccccccCCcc-----cccccc------c--ccccccccccCCCCcccccccccCCcceEecCCCCccchhhHHHHh---
Q 001136 992 GVDFFHCMTCN-----CCLGLK------L--LNHKCLEKCLETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYT--- 1055 (1143)
Q Consensus 992 ~~~~~hC~~C~-----~C~~~~------~--~~H~C~e~~~~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl--- 1055 (1143)
+++...|+.|+ .|+.+. + ....|.+= ..|.||.+.-.....-+.--.|...||..|+++-+
T Consensus 23 ~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~ 99 (112)
T 3v43_A 23 PEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIEC---KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRM 99 (112)
T ss_dssp CCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTT---CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSC
T ss_pred chhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccC---CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCC
Confidence 45677777776 344331 1 23334432 25778875311122222333599999999997643
Q ss_pred -ccCCCCcCCCc
Q 001136 1056 -CSHYTCPICSK 1066 (1143)
Q Consensus 1056 -~~~~~CPiCr~ 1066 (1143)
.....||.|+.
T Consensus 100 P~~~W~C~~C~~ 111 (112)
T 3v43_A 100 PKGMWICQICRP 111 (112)
T ss_dssp CSSCCCCTTTSC
T ss_pred CCCCeECCCCCC
Confidence 23467888864
No 84
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=82.24 E-value=0.41 Score=43.24 Aligned_cols=51 Identities=18% Similarity=0.475 Sum_probs=30.2
Q ss_pred ccccccC-------CcccChhhhcccCCCCCCccccceeeccccccccccCCCCCCCCCCCCcceeEeccccccc
Q 001136 903 IRAACCG-------KLFTCRFCHDKASDHSMDRKATSEMMCMHCLKIQAIGPNCTTPSCNGLSMAKYYCNICKFF 970 (1143)
Q Consensus 903 l~~~cC~-------k~y~Cr~CHde~~~H~~~r~~~~~~~C~~C~~~q~~~~~C~~~~cc~~~f~~y~C~~C~~~ 970 (1143)
+.||.|+ ++|.|..|+... .....|..|+.+..+ |.. ||.. .|||..|+=.
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~C~~~~---------~~~afCPeCgq~Le~---lkA---CGA~--~yFC~~C~~L 60 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTAHCETCAKDF---------SLQALCPDCRQPLQV---LKA---CGAV--DYFCQNGHGL 60 (81)
T ss_dssp CCCSSSCSCCEECSSEEECTTTCCEE---------EEEEECSSSCSCCCE---EEE---TTEE--EECCTTTTCC
T ss_pred CCCCCCCCccccCCCceECccccccC---------CCcccCcchhhHHHH---HHh---cCCc--CeeeccCCCE
Confidence 3466664 355566666531 224477777766532 554 4643 8998888743
No 85
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=79.88 E-value=0.66 Score=46.06 Aligned_cols=36 Identities=19% Similarity=0.584 Sum_probs=28.1
Q ss_pred CcceEEcCCCCCCCc--c-----------cchhh------cccCCCCCCcccccc
Q 001136 1094 QVQDILCNDCEQKGA--A-----------RFHWL------YHKCGFCGSYNTRLI 1129 (1143)
Q Consensus 1094 ~~~~i~CndC~~~s~--~-----------~~h~l------~~kC~~C~syNt~~~ 1129 (1143)
......|++||.... . ++|++ +.+||.|||++..++
T Consensus 67 ~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i~ 121 (139)
T 3a43_A 67 EEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVV 121 (139)
T ss_dssp ECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEEE
T ss_pred cCCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccEEe
Confidence 445789999998754 2 46766 789999999998765
No 86
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=78.58 E-value=0.85 Score=43.25 Aligned_cols=43 Identities=21% Similarity=0.412 Sum_probs=25.7
Q ss_pred CCcccccccccCCcceEecCCCCccchhhHHHHhc----cCCCCcCCC
Q 001136 1022 NCPICCDFLFTSSETVRALPCGHYMHLACFQAYTC----SHYTCPICS 1065 (1143)
Q Consensus 1022 ~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~----~~~~CPiCr 1065 (1143)
.|.||... -....-+.--.|...||..|+.+-+. ....||.|.
T Consensus 56 ~C~~C~~~-~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~ 102 (111)
T 2ysm_A 56 VCQNCKQS-GEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCR 102 (111)
T ss_dssp CCTTTCCC-SCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHH
T ss_pred cccccCcc-CCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCc
Confidence 46677654 11222233346999999999976332 245677764
No 87
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=75.24 E-value=0.84 Score=42.36 Aligned_cols=50 Identities=18% Similarity=0.450 Sum_probs=32.0
Q ss_pred ccccccCC-------cccChhhhcccCCCCCCccccceeeccccccccccCCCCCCCCCCCCcceeEecccccc
Q 001136 903 IRAACCGK-------LFTCRFCHDKASDHSMDRKATSEMMCMHCLKIQAIGPNCTTPSCNGLSMAKYYCNICKF 969 (1143)
Q Consensus 903 l~~~cC~k-------~y~Cr~CHde~~~H~~~r~~~~~~~C~~C~~~q~~~~~C~~~~cc~~~f~~y~C~~C~~ 969 (1143)
+.||.|+. +|.|..|+.+ -.....|..|+.+-.+-+. || -+.|||..|+=
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~---------f~~~a~CPdC~q~LevLkA------CG--AvdYFC~~chg 89 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEF---------IEMKALCPDCHQPLQVLKA------CG--AVDYFCQHGHG 89 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCE---------EEEEEECTTTCSBCEEEEE------TT--EEEEEETTTTE
T ss_pred ccCccCCCcceecCCEEECccccch---------hhccccCcchhhHHHHHHH------hc--CcchhhccCCc
Confidence 66777753 5567777653 2446778888776433322 24 47899999983
No 88
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=69.66 E-value=2 Score=41.31 Aligned_cols=37 Identities=22% Similarity=0.404 Sum_probs=27.2
Q ss_pred cCcceEEcCCCCCCCcccchhhcc-cCCCCCCcccccccc
Q 001136 1093 NQVQDILCNDCEQKGAARFHWLYH-KCGFCGSYNTRLIKN 1131 (1143)
Q Consensus 1093 ~~~~~i~CndC~~~s~~~~h~l~~-kC~~C~syNt~~~~~ 1131 (1143)
.......|.+||......- ... +||.|||+|.+++.-
T Consensus 69 ~~p~~~~C~~CG~~~e~~~--~~~~~CP~Cgs~~~~i~~G 106 (119)
T 2kdx_A 69 DEKVELECKDCSHVFKPNA--LDYGVCEKCHSKNVIITQG 106 (119)
T ss_dssp EECCEEECSSSSCEECSCC--STTCCCSSSSSCCCEEEES
T ss_pred eccceEEcCCCCCEEeCCC--CCCCcCccccCCCcEEecC
Confidence 3445789999998765432 245 799999999988643
No 89
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=69.18 E-value=5.6 Score=39.61 Aligned_cols=89 Identities=13% Similarity=0.302 Sum_probs=50.5
Q ss_pred CCcccCCCCCccccCCCCCccccc----cCCccccccccc-ccccccccccCCCCcccccccccCCcceEecCCCCccch
Q 001136 974 RTVYHCPFCNLCRVGGGLGVDFFH----CMTCNCCLGLKL-LNHKCLEKCLETNCPICCDFLFTSSETVRALPCGHYMHL 1048 (1143)
Q Consensus 974 ~~~yhC~~CgiCr~g~~l~~~~~h----C~~C~~C~~~~~-~~H~C~e~~~~~~CpIC~e~lf~s~~~v~~lpCgH~fH~ 1048 (1143)
.+.++|--||.-.....-..-++| --.|..|...-+ ..-.--+...+..|.||.+. ++-+.--.|--+||.
T Consensus 12 ~~~i~Ct~Cg~~~~~~q~~~~~~HPll~v~~C~~C~~~y~~~~~~~d~Dg~~d~C~vC~~G----G~LlcCD~Cpr~Fh~ 87 (142)
T 2lbm_A 12 HGIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEG----GNLICCDFCHNAFCK 87 (142)
T ss_dssp CCCCBCTTTCSBSTTTCSSSEEEETTTTEEEEHHHHHHHHHSCCCBCTTSCBCSCSSSCCC----SSEEECSSSCCEEEH
T ss_pred cCCCEecCCCCccccccccchhcCCCccccccHHHHHHHhcCCceecCCCCCCeecccCCC----CcEEeCCCCCCeeeH
Confidence 667778878775432210112233 333444443222 11111345567889999864 332233369999999
Q ss_pred hhHHHHh-----------ccCCCCcCCCc
Q 001136 1049 ACFQAYT-----------CSHYTCPICSK 1066 (1143)
Q Consensus 1049 ~Ci~~wl-----------~~~~~CPiCr~ 1066 (1143)
.|+.+-+ ...-.||+|..
T Consensus 88 ~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 88 KCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp HHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred hhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 9999643 23467999974
No 90
>3agt_A Hemerythrin-like domain protein DCRH; metal binding protein, oxygen binding, DIIRON, four-helix BU; 1.40A {Desulfovibrio vulgaris} PDB: 2awy_A 2avk_A 3agu_A 2awc_A
Probab=66.03 E-value=15 Score=35.72 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001136 111 ARKYSLEHEGESNLFDHLFQLLNSYTQNDESFPKELASCSRALQTSINQHMSKEEQQV 168 (1143)
Q Consensus 111 l~~le~EH~~i~~ll~~L~~~l~~~~~~~~~~~~eLa~~l~~l~~~L~~HL~~EE~~l 168 (1143)
+..+..||+.+-.++++|..++..- . ...+...++.|......|+..||...
T Consensus 16 ~~~ID~qHk~L~~lin~l~~a~~~~-----~-~~~i~~~l~~L~~y~~~HF~~EE~lM 67 (136)
T 3agt_A 16 LPSIDTQHKRLVDYINDLYRAARRR-----D-MDKAREVFDALKNYAVEHFGYEERLF 67 (136)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTT-----C-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcC-----c-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999988877541 2 57788899999999999999999965
No 91
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=64.01 E-value=3.4 Score=35.24 Aligned_cols=32 Identities=28% Similarity=0.551 Sum_probs=23.9
Q ss_pred CcceEEcCCCCCCCcccchhhcccCCCCCCccccccc
Q 001136 1094 QVQDILCNDCEQKGAARFHWLYHKCGFCGSYNTRLIK 1130 (1143)
Q Consensus 1094 ~~~~i~CndC~~~s~~~~h~l~~kC~~C~syNt~~~~ 1130 (1143)
....+.|..||+. ..+ .+.|++||-|+-+++-
T Consensus 27 ~p~l~~c~~cG~~-~~p----H~vc~~CG~Y~gr~v~ 58 (60)
T 2zjr_Z 27 APNLTECPQCHGK-KLS----HHICPNCGYYDGRQVL 58 (60)
T ss_dssp CCCCEECTTTCCE-ECT----TBCCTTTCBSSSBCSC
T ss_pred CCCceECCCCCCE-eCC----ceEcCCCCcCCCEEee
Confidence 3457899999976 233 3459999999999863
No 92
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=63.61 E-value=3.6 Score=37.83 Aligned_cols=34 Identities=18% Similarity=0.385 Sum_probs=24.9
Q ss_pred CCCCcccccccccCCcceE-ecCCCCccchhhHHH-Hh
Q 001136 1020 ETNCPICCDFLFTSSETVR-ALPCGHYMHLACFQA-YT 1055 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~-~lpCgH~fH~~Ci~~-wl 1055 (1143)
+-.|+||.++.+ . .++. -++|||.|...|+.. |.
T Consensus 3 e~~C~~C~~~~~-~-~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQDPA-Q-DAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCSSSC-C-BCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCcCCCCCCC-C-CceEECCcCChHHhHHHCHHHhc
Confidence 457999997522 2 2333 389999999999998 53
No 93
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=63.34 E-value=1.2 Score=42.48 Aligned_cols=45 Identities=16% Similarity=0.337 Sum_probs=26.4
Q ss_pred CCCcccccccccCCcce-EecCCCCccchhhHHHHhc--------cCCCCcCCCc
Q 001136 1021 TNCPICCDFLFTSSETV-RALPCGHYMHLACFQAYTC--------SHYTCPICSK 1066 (1143)
Q Consensus 1021 ~~CpIC~e~lf~s~~~v-~~lpCgH~fH~~Ci~~wl~--------~~~~CPiCr~ 1066 (1143)
..|+.|... ....... .---|+..||..|...... ..+.||.|+.
T Consensus 60 ~~c~~c~~~-~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 60 GEVDQNEET-QDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp CCBCCHHHH-CCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred Ccccccccc-cccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 345666543 2222222 2346999999999875421 2377999974
No 94
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=61.16 E-value=6.5 Score=35.86 Aligned_cols=40 Identities=25% Similarity=0.562 Sum_probs=28.9
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCcccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLG 1069 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~ 1069 (1143)
...|+.|...+..+...+..+ |..||..|| +|-.|++++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~--~~~~H~~CF--------~C~~C~~~L~ 44 (101)
T 2cup_A 5 SSGCVECRKPIGADSKEVHYK--NRFWHDTCF--------RCAKCLHPLA 44 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEEET--TEEEETTTC--------CCSSSCCCTT
T ss_pred CCcCcccCCcccCCceEEEEC--ccChhhcCC--------cccccCCCCC
Confidence 456899988865444444444 788998887 6888988885
No 95
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=59.99 E-value=7.4 Score=38.14 Aligned_cols=88 Identities=14% Similarity=0.303 Sum_probs=48.0
Q ss_pred CcccCCCCCccccCCCCCccccc----cCCccccccccc-ccccccccccCCCCcccccccccCCcceEecCCCCccchh
Q 001136 975 TVYHCPFCNLCRVGGGLGVDFFH----CMTCNCCLGLKL-LNHKCLEKCLETNCPICCDFLFTSSETVRALPCGHYMHLA 1049 (1143)
Q Consensus 975 ~~yhC~~CgiCr~g~~l~~~~~h----C~~C~~C~~~~~-~~H~C~e~~~~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~ 1049 (1143)
+++||--||.=.+...-..-++| --.|..|...-. ....=.+...+..|.||.+- ++-+---.|-..||..
T Consensus 7 ~~~~Ct~Cg~~~~~~~~~~~~~HPll~v~~C~~C~~~y~~~~~~~d~Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~ 82 (129)
T 3ql9_A 7 GIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEG----GNLICCDFCHNAFCKK 82 (129)
T ss_dssp CSCBCTTTCCBCCCCBTTTEEECTTTCCEEEHHHHHHHHHSCCCBCTTSCBSSCTTTCCC----SEEEECSSSSCEEEHH
T ss_pred CceEeccCCCCCcccCCCccccCCCcCceeCHhHHhhhhccccccCCCCCCCcCeecCCC----CeeEecCCCchhhhHH
Confidence 45666666654432211112233 333444443222 22222345567789999863 2222223588999999
Q ss_pred hHHHHh-----------ccCCCCcCCCc
Q 001136 1050 CFQAYT-----------CSHYTCPICSK 1066 (1143)
Q Consensus 1050 Ci~~wl-----------~~~~~CPiCr~ 1066 (1143)
|+.+-+ ...-.|++|+-
T Consensus 83 Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 83 CILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp HHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred HhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 999741 23478999954
No 96
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=57.53 E-value=2.9 Score=46.80 Aligned_cols=24 Identities=25% Similarity=0.753 Sum_probs=20.6
Q ss_pred eEEcCCCCCCCcccchhhcccCCCCCCc
Q 001136 1097 DILCNDCEQKGAARFHWLYHKCGFCGSY 1124 (1143)
Q Consensus 1097 ~i~CndC~~~s~~~~h~l~~kC~~C~sy 1124 (1143)
...|+-|+ ..+|+.-.||++||+-
T Consensus 208 ~l~Cs~C~----t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 208 YLSCSLCA----CEWHYVRIKCSHCEES 231 (309)
T ss_dssp EEEETTTC----CEEECCTTSCSSSCCC
T ss_pred EEEeCCCC----CEEeecCcCCcCCCCC
Confidence 67899998 6788889999999985
No 97
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=56.61 E-value=1.5 Score=49.11 Aligned_cols=23 Identities=17% Similarity=0.405 Sum_probs=16.4
Q ss_pred ccchhhHHHHhccCCCCcCCCcc
Q 001136 1045 YMHLACFQAYTCSHYTCPICSKS 1067 (1143)
Q Consensus 1045 ~fH~~Ci~~wl~~~~~CPiCr~s 1067 (1143)
..+.-|-..|--....||.|..+
T Consensus 209 l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 209 LSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp EEETTTCCEEECCTTSCSSSCCC
T ss_pred EEeCCCCCEEeecCcCCcCCCCC
Confidence 33445666676678899999876
No 98
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=56.46 E-value=7.6 Score=36.59 Aligned_cols=45 Identities=22% Similarity=0.538 Sum_probs=28.3
Q ss_pred cCCCCcccccccccCCc-ceEecCCCCccchhhHHHHhc----cCCCCcCCC
Q 001136 1019 LETNCPICCDFLFTSSE-TVRALPCGHYMHLACFQAYTC----SHYTCPICS 1065 (1143)
Q Consensus 1019 ~~~~CpIC~e~lf~s~~-~v~~lpCgH~fH~~Ci~~wl~----~~~~CPiCr 1065 (1143)
.+..|.||.+. .... -+.--.|+..||..|+..... ....||.|.
T Consensus 6 ~~~~C~~C~~~--g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSP--GDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCC--CCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCC--CCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 45679999764 1111 133357999999999987642 234566553
No 99
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.11 E-value=12 Score=32.40 Aligned_cols=67 Identities=22% Similarity=0.400 Sum_probs=43.5
Q ss_pred CCCccccccccc--CCcceEecCCCCccchhhHHHHhccCCCCcCCCccccchhhhhhhhHHHHhhcCCChhhhcCcceE
Q 001136 1021 TNCPICCDFLFT--SSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDMAIYFGMIDALLAAEELPEEYRNQVQDI 1098 (1143)
Q Consensus 1021 ~~CpIC~e~lf~--s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~m~~~~~~ld~~i~~~p~P~~y~~~~~~i 1098 (1143)
..|+.|...+.. +...+.. -|..||..|| +|-.|+++|... .+ -.....+
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a--~~~~wH~~CF--------~C~~C~~~L~~~-~f-----------------~~~~g~~ 57 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICF--QDSQWHSECF--------NCGKCSVSLVGK-GF-----------------LTQNKEI 57 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEE--TTEEEEGGGC--------BCTTTCCBCSSS-CE-----------------EEETTEE
T ss_pred CCCccCCCcccCCCCceeEEE--CCcccCcccC--------ChhhCCCcCCCC-ce-----------------EeECCEE
Confidence 468899888664 3333333 4889999987 789999888632 11 1223468
Q ss_pred EcCCCCCCCcccchhhcccCCCC
Q 001136 1099 LCNDCEQKGAARFHWLYHKCGFC 1121 (1143)
Q Consensus 1099 ~CndC~~~s~~~~h~l~~kC~~C 1121 (1143)
+|.+|-.+- .+-+|..|
T Consensus 58 yC~~cy~~~------f~~~C~~~ 74 (76)
T 1x68_A 58 FCQKCGSGM------DTDISGPS 74 (76)
T ss_dssp EETTTTCCC------CCCSSSSS
T ss_pred ECHHHhhhh------hCCcCCCC
Confidence 999998643 24466654
No 100
>3agt_A Hemerythrin-like domain protein DCRH; metal binding protein, oxygen binding, DIIRON, four-helix BU; 1.40A {Desulfovibrio vulgaris} PDB: 2awy_A 2avk_A 3agu_A 2awc_A
Probab=56.05 E-value=1.4e+02 Score=28.54 Aligned_cols=123 Identities=16% Similarity=0.092 Sum_probs=78.8
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHhcccCccccccchHHHhh-hcchHH
Q 001136 33 DEEEDDDSPILIFCFFHKAVRNELDALHQLAMNFATGHRVDILSLSERYRFLHSVYKHHSNAEDEVIFPALDI-RVKNVA 111 (1143)
Q Consensus 33 ~~~~~~~~Pi~~m~~~H~aLRreL~~L~~la~~~~~gd~~~~~~L~~~~~~l~~~L~~HH~~EDevLFPaL~~-R~p~vl 111 (1143)
.+...+. -+..+-.-|+.|-..++.|...+.. ++ ...+...+..|.+....|=..||.+. ++ ..| -+
T Consensus 8 ~W~~~~~-G~~~ID~qHk~L~~lin~l~~a~~~---~~---~~~i~~~l~~L~~y~~~HF~~EE~lM----~~~~yp-~~ 75 (136)
T 3agt_A 8 KWSEDLA-NLPSIDTQHKRLVDYINDLYRAARR---RD---MDKAREVFDALKNYAVEHFGYEERLF----ADYAYP-EA 75 (136)
T ss_dssp CCCGGGC-CSHHHHHHHHHHHHHHHHHHHHHHT---TC---HHHHHHHHHHHHHHHHHHHHHHHHHH----HHTTCT-TH
T ss_pred ccChhhC-CCHHHHHHHHHHHHHHHHHHHHHHc---Cc---HHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCCC-cH
Confidence 3444555 6677788999999888888776553 22 45677778888888888888888432 11 122 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 001136 112 RKYSLEHEGESNLFDHLFQLLNSYTQNDESFPKELASCSRALQTSINQHMSKEEQQVFPLLT 173 (1143)
Q Consensus 112 ~~le~EH~~i~~ll~~L~~~l~~~~~~~~~~~~eLa~~l~~l~~~L~~HL~~EE~~lfPLa~ 173 (1143)
..-..+|+..-..+.++...+ ..+.. ......+.-+..-+..|+..+...+.+.+.
T Consensus 76 ~~H~~~H~~f~~~v~~l~~~~---~~g~~---~~~~~l~~~L~~Wl~~HI~~~D~~~~~~l~ 131 (136)
T 3agt_A 76 TRHKEIHRRFVETVLKWEKQL---AAGDP---EVVMTTLRGLVDWLVNHIMKEDKKYEAYLR 131 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---TTCCH---HHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HcCCh---HHHHHHHHHHHHHHHHHhHHHhHHHHHHHH
Confidence 334456666655555555544 33321 122344566778899999999988877664
No 101
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=55.99 E-value=4.6 Score=34.44 Aligned_cols=29 Identities=28% Similarity=0.626 Sum_probs=22.1
Q ss_pred ceEEcCCCCCCCcccchhhcccCCCCCCcccccc
Q 001136 1096 QDILCNDCEQKGAARFHWLYHKCGFCGSYNTRLI 1129 (1143)
Q Consensus 1096 ~~i~CndC~~~s~~~~h~l~~kC~~C~syNt~~~ 1129 (1143)
..+.|..||+. ...| +.|++||-|+-+++
T Consensus 29 ~l~~c~~cGe~--~~~H---~vc~~CG~Y~gr~V 57 (60)
T 3v2d_5 29 TLVPCPECKAM--KPPH---TVCPECGYYAGRKV 57 (60)
T ss_dssp CCEECTTTCCE--ECTT---SCCTTTCEETTEEC
T ss_pred ceeECCCCCCe--ecce---EEcCCCCcCCCEEe
Confidence 47899999973 2223 35999999999876
No 102
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=55.11 E-value=9 Score=34.76 Aligned_cols=34 Identities=18% Similarity=0.463 Sum_probs=23.9
Q ss_pred cCCCCcccccccccCCcceEecCCCCccchhhHHHH
Q 001136 1019 LETNCPICCDFLFTSSETVRALPCGHYMHLACFQAY 1054 (1143)
Q Consensus 1019 ~~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~w 1054 (1143)
.+..|.||-. |++......=-||-.||..|+.+.
T Consensus 14 ~D~~C~VC~~--~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEV--WTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCC--CCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCcccc--ccccceeccccccccccHhhcccc
Confidence 3677999985 454443222238999999999996
No 103
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=55.06 E-value=4.6 Score=39.60 Aligned_cols=58 Identities=17% Similarity=0.389 Sum_probs=29.0
Q ss_pred hhHHHHhccCCCCcCCCccccchhhhhhhhHHHHhhcCCChhhhcCcceEEcCCCCCCCcccchhhcccCCC--CCCcc
Q 001136 1049 ACFQAYTCSHYTCPICSKSLGDMAIYFGMIDALLAAEELPEEYRNQVQDILCNDCEQKGAARFHWLYHKCGF--CGSYN 1125 (1143)
Q Consensus 1049 ~Ci~~wl~~~~~CPiCr~s~~~m~~~~~~ld~~i~~~p~P~~y~~~~~~i~CndC~~~s~~~~h~l~~kC~~--C~syN 1125 (1143)
.|+..|. ...||.|+.... +. .. .....+|+. ...|.+|+...+. |+.|.|++ ||.|+
T Consensus 2 ~~~~~W~--~e~~~~C~h~~~-l~----q~---~~~~~~~~~------~~~C~~C~~~~~L---wlCL~CG~vgCgr~~ 61 (129)
T 2g45_A 2 QEVQAWD--GEVRQVSKHAFS-LK----QL---DNPARIPPC------GWKCSKCDMRENL---WLNLTDGSILCGRRY 61 (129)
T ss_dssp -----------CCEECTTTTT-CC----CC---SSCCCCCCC------BCCCSSSSCCSSE---EEETTTCCEEECCBC
T ss_pred hHHHhhc--CCCCCCCCCcCc-cc----cc---ccccccCCC------CCcCccccCcCce---EEeccCCccccCccc
Confidence 5888895 356888876531 10 00 000112222 2359999988765 89999998 98885
No 104
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=49.88 E-value=5.9 Score=50.30 Aligned_cols=68 Identities=18% Similarity=0.340 Sum_probs=31.6
Q ss_pred ecCCCCccchhhHHHHhccCCCCcCCCccccchhhhhhhhHHHHhhcCCChhhhcCcceEEcCCCCCCCcccchhhcccC
Q 001136 1039 ALPCGHYMHLACFQAYTCSHYTCPICSKSLGDMAIYFGMIDALLAAEELPEEYRNQVQDILCNDCEQKGAARFHWLYHKC 1118 (1143)
Q Consensus 1039 ~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~m~~~~~~ld~~i~~~p~P~~y~~~~~~i~CndC~~~s~~~~h~l~~kC 1118 (1143)
++.+.+.++..|+..|- ...||+|+....- . .++ ...++|+ .+ -.|.+|+...+. |++|.|
T Consensus 173 i~~~~~~~~~~~~~~w~--~~~~~~c~h~~~~-~----~~~---~~~~~~~--~~----~~C~~c~~~~~l---w~CL~C 233 (854)
T 3ihp_A 173 LLSADSASRKQEVQAWD--GEVRQVSKHAFSL-K----QLD---NPARIPP--CG----WKCSKCDMRENL---WLNLTD 233 (854)
T ss_dssp HTC------------------CCCBCTTTTTC-C----CCS---SCCCCCS--SC----CCCSSSCCCSSE---EEETTT
T ss_pred HHhcCCHHHHHHHHhhc--CccCCCCcCcccc-c----ccc---ccccCCC--CC----CcCcCcCCcCce---EEEecC
Confidence 46678999999999996 3358999876421 0 000 0112222 22 359999988865 899999
Q ss_pred CC--CCCcc
Q 001136 1119 GF--CGSYN 1125 (1143)
Q Consensus 1119 ~~--C~syN 1125 (1143)
++ ||+|+
T Consensus 234 g~vgC~r~~ 242 (854)
T 3ihp_A 234 GSILCGRRY 242 (854)
T ss_dssp CCEEECCBC
T ss_pred CCccccccc
Confidence 97 98774
No 105
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=49.87 E-value=7.2 Score=40.43 Aligned_cols=49 Identities=20% Similarity=0.579 Sum_probs=33.3
Q ss_pred CCCcccccccccCCc----ceEecCCCCccchhhHHHH------hc-----cCCCCcCCCccccc
Q 001136 1021 TNCPICCDFLFTSSE----TVRALPCGHYMHLACFQAY------TC-----SHYTCPICSKSLGD 1070 (1143)
Q Consensus 1021 ~~CpIC~e~lf~s~~----~v~~lpCgH~fH~~Ci~~w------l~-----~~~~CPiCr~s~~~ 1070 (1143)
..||||... +.+.+ -+..-.|..-||..|..-- +. ..|.||.|+..-+.
T Consensus 3 ~~CpiC~k~-Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 3 NFCPLCDKC-YDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CBCTTTCCB-CTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred CcCCCCcCc-cCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 459999876 55543 2333458899999996421 11 27999999887764
No 106
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=49.15 E-value=35 Score=32.72 Aligned_cols=76 Identities=13% Similarity=0.130 Sum_probs=58.0
Q ss_pred hhhHHHHhHHHHHHHHHHHHhhcCCccchHHHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhcCCHHHHHHHHH
Q 001136 374 QKHAEEESQFNDFRLLIESIQNEGAISTSAEFY---AKLCSHADQIMETIERHFHKVEVQVLPL-ARNHFSFKRQREILY 449 (1143)
Q Consensus 374 ~EH~~i~~~~~~f~~ll~~~~~~~~~~~~~~~~---~~L~~~l~~l~~~L~~Hf~kEE~qvfPL-~~k~~S~eEQ~~L~~ 449 (1143)
.|=....+.++.+++.+++....++..-.+.|. ++|...+.++-..=...+.+|-..|.-| +.+-+|-+||+.++.
T Consensus 10 ~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~~lske~~~l~~lpFsR~iTK~EQADmGk 89 (123)
T 2lf0_A 10 NEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKLSKEAQKLMKMPFQRAITKKEQADMGK 89 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHSCSEEEECCHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCccccccHHHHHhHHH
Confidence 455566777888888888876666544333333 4677788888888889999999999888 789999999999874
No 107
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=48.32 E-value=19 Score=35.89 Aligned_cols=72 Identities=24% Similarity=0.454 Sum_probs=36.4
Q ss_pred ccccccCCccccccccc--cccccccc-ccCCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCcccc
Q 001136 993 VDFFHCMTCNCCLGLKL--LNHKCLEK-CLETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLG 1069 (1143)
Q Consensus 993 ~~~~hC~~C~~C~~~~~--~~H~C~e~-~~~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~ 1069 (1143)
+.-|.|..|+.-..... ..|.-.-. .....|++|... |.+...+. .|.. .--....+.||+|.+.+.
T Consensus 47 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~-f~~~~~l~-------~H~~--~h~~~~~~~C~~C~~~f~ 116 (190)
T 2i13_A 47 EKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKS-FSQRANLR-------AHQR--THTGEKPYACPECGKSFS 116 (190)
T ss_dssp -CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCE-ESCHHHHH-------HHHH--HHHTCCCEECTTTCCEES
T ss_pred CCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCc-cCCHHHHH-------HHHH--hcCCCCCCcCCCCCCccC
Confidence 44678888887665433 45543221 123468888765 54432211 0110 000123477888887776
Q ss_pred chhhh
Q 001136 1070 DMAIY 1074 (1143)
Q Consensus 1070 ~m~~~ 1074 (1143)
....+
T Consensus 117 ~~~~l 121 (190)
T 2i13_A 117 QLAHL 121 (190)
T ss_dssp SHHHH
T ss_pred CHHHH
Confidence 55443
No 108
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=47.90 E-value=5.2 Score=36.14 Aligned_cols=50 Identities=30% Similarity=0.610 Sum_probs=30.8
Q ss_pred ccccCCcccccccccccccccccccCCCCcccccccccCCcceEec-CCCCccchhhHHHHhccCCCCcCCCccccchhh
Q 001136 995 FFHCMTCNCCLGLKLLNHKCLEKCLETNCPICCDFLFTSSETVRAL-PCGHYMHLACFQAYTCSHYTCPICSKSLGDMAI 1073 (1143)
Q Consensus 995 ~~hC~~C~~C~~~~~~~H~C~e~~~~~~CpIC~e~lf~s~~~v~~l-pCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~m~~ 1073 (1143)
++||..|+.=+... ..||-|...| ..+ .||-. +|-|+-|+.-+..-.+
T Consensus 18 ~~~C~~C~~~~~~~------------afCPeCgq~L-------e~lkACGA~------------~yFC~~C~~LiSkkrv 66 (81)
T 2jrp_A 18 TAHCETCAKDFSLQ------------ALCPDCRQPL-------QVLKACGAV------------DYFCQNGHGLISKKRV 66 (81)
T ss_dssp EEECTTTCCEEEEE------------EECSSSCSCC-------CEEEETTEE------------EECCTTTTCCCCTTSS
T ss_pred ceECccccccCCCc------------ccCcchhhHH-------HHHHhcCCc------------CeeeccCCCEeecceE
Confidence 67777777765543 4688888763 224 37733 6777777765554444
Q ss_pred hh
Q 001136 1074 YF 1075 (1143)
Q Consensus 1074 ~~ 1075 (1143)
.|
T Consensus 67 ~f 68 (81)
T 2jrp_A 67 NF 68 (81)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 109
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=47.20 E-value=8.1 Score=32.27 Aligned_cols=14 Identities=43% Similarity=1.253 Sum_probs=10.2
Q ss_pred ceeEecccccc-ccC
Q 001136 959 MAKYYCNICKF-FDD 972 (1143)
Q Consensus 959 f~~y~C~~C~~-~d~ 972 (1143)
|.+|-|.+|.+ ||.
T Consensus 1 m~~y~C~vCGyvYd~ 15 (54)
T 4rxn_A 1 MKKYTCTVCGYIYDP 15 (54)
T ss_dssp CCCEEETTTCCEECT
T ss_pred CCceECCCCCeEECC
Confidence 56788888886 443
No 110
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=46.47 E-value=5.1 Score=37.23 Aligned_cols=23 Identities=22% Similarity=0.635 Sum_probs=14.6
Q ss_pred ccccCCcccccccccccccccccccCCCCcccccc
Q 001136 995 FFHCMTCNCCLGLKLLNHKCLEKCLETNCPICCDF 1029 (1143)
Q Consensus 995 ~~hC~~C~~C~~~~~~~H~C~e~~~~~~CpIC~e~ 1029 (1143)
+|||..|+.-+.. ...||-|..+
T Consensus 48 ~~hC~~C~~~f~~------------~a~CPdC~q~ 70 (101)
T 2jne_A 48 HARCRSCGEFIEM------------KALCPDCHQP 70 (101)
T ss_dssp EEEETTTCCEEEE------------EEECTTTCSB
T ss_pred EEECccccchhhc------------cccCcchhhH
Confidence 5566666654443 2679999876
No 111
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=46.29 E-value=25 Score=32.24 Aligned_cols=54 Identities=22% Similarity=0.374 Sum_probs=37.5
Q ss_pred cccccCCCCcccccccccCCcceEe---cCCCCccchhhHHHHh-ccCCCCcCCCccc
Q 001136 1015 LEKCLETNCPICCDFLFTSSETVRA---LPCGHYMHLACFQAYT-CSHYTCPICSKSL 1068 (1143)
Q Consensus 1015 ~e~~~~~~CpIC~e~lf~s~~~v~~---lpCgH~fH~~Ci~~wl-~~~~~CPiCr~s~ 1068 (1143)
........|.||.+++=.....-.. --|+-..++.|+.--. ..+..||.|+..+
T Consensus 11 ~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrY 68 (93)
T 1weo_A 11 LKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRY 68 (93)
T ss_dssp CSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCC
T ss_pred ccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcc
Confidence 3444557899999986333332222 3488899999997643 5678899998766
No 112
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=45.91 E-value=13 Score=32.20 Aligned_cols=43 Identities=23% Similarity=0.565 Sum_probs=29.6
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhc----cCCCCcCCCc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTC----SHYTCPICSK 1066 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~----~~~~CPiCr~ 1066 (1143)
...|.||.+. +.-+.--.|...||..|++..+. ..-.||.|..
T Consensus 12 ~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 12 GARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp TCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 3458888753 33333346999999999987653 3467999964
No 113
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=44.48 E-value=10 Score=30.66 Aligned_cols=27 Identities=37% Similarity=0.759 Sum_probs=14.7
Q ss_pred eeEecccccc-ccCC----CCcccCCCCCccc
Q 001136 960 AKYYCNICKF-FDDE----RTVYHCPFCNLCR 986 (1143)
Q Consensus 960 ~~y~C~~C~~-~d~~----~~~yhC~~CgiCr 986 (1143)
+.|-|-.|.- |+++ -.-.+||+||.=-
T Consensus 2 ~iY~C~rCg~~fs~~el~~lP~IrCpyCGyri 33 (48)
T 4ayb_P 2 AVYRCGKCWKTFTDEQLKVLPGVRCPYCGYKI 33 (48)
T ss_dssp ---CCCCTTTTCCCCCSCCCSSSCCTTTCCSC
T ss_pred cEEEeeccCCCccHHHHhhCCCcccCccCcEE
Confidence 4555666642 4444 4667888888643
No 114
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=44.15 E-value=15 Score=36.80 Aligned_cols=114 Identities=20% Similarity=0.387 Sum_probs=62.7
Q ss_pred CCcccCCCCCccccCCC---------CCccccccCCccccccccc--cccccccc-ccCCCCcccccccccCCcceEecC
Q 001136 974 RTVYHCPFCNLCRVGGG---------LGVDFFHCMTCNCCLGLKL--LNHKCLEK-CLETNCPICCDFLFTSSETVRALP 1041 (1143)
Q Consensus 974 ~~~yhC~~CgiCr~g~~---------l~~~~~hC~~C~~C~~~~~--~~H~C~e~-~~~~~CpIC~e~lf~s~~~v~~lp 1041 (1143)
..+|.|+.||.--.... -++.-|.|..|+.-..... ..|.-.-. .....|++|... |.+...+.
T Consensus 47 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~-f~~~~~l~--- 122 (190)
T 2i13_A 47 EKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKS-FSQLAHLR--- 122 (190)
T ss_dssp -CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCE-ESSHHHHH---
T ss_pred CCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCc-cCCHHHHH---
Confidence 46799999985221100 1234688999987765543 55543322 223469999876 55433211
Q ss_pred CCCccchhhHHHHh-ccCCCCcCCCccccchhhhhhhhHHHHhhcCCChhhhcCcceEEcCCCCCCCcc
Q 001136 1042 CGHYMHLACFQAYT-CSHYTCPICSKSLGDMAIYFGMIDALLAAEELPEEYRNQVQDILCNDCEQKGAA 1109 (1143)
Q Consensus 1042 CgH~fH~~Ci~~wl-~~~~~CPiCr~s~~~m~~~~~~ld~~i~~~p~P~~y~~~~~~i~CndC~~~s~~ 1109 (1143)
.|.. .-. ...+.||+|.+.+.....+..-+..- .......|..|++....
T Consensus 123 ----~H~~---~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H-----------~~~~~~~C~~C~~~f~~ 173 (190)
T 2i13_A 123 ----AHQR---THTGEKPYKCPECGKSFSREDNLHTHQRTH-----------TGEKPYKCPECGKSFSR 173 (190)
T ss_dssp ----HHHH---HHHCCCCEECTTTCCEESCHHHHHHHHHHH-----------HCCCCEECTTTCCEESS
T ss_pred ----HHHH---HhCCCCCeECCCCCcccCCHHHHHHHHHhc-----------CCCCCeECCCCCCccCC
Confidence 1110 011 23588999999987665543332111 11124679999977654
No 115
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=43.49 E-value=11 Score=31.53 Aligned_cols=11 Identities=45% Similarity=1.183 Sum_probs=7.8
Q ss_pred ceeEecccccc
Q 001136 959 MAKYYCNICKF 969 (1143)
Q Consensus 959 f~~y~C~~C~~ 969 (1143)
|.+|.|.+|.+
T Consensus 1 m~~y~C~~CGy 11 (55)
T 2v3b_B 1 MRKWQCVVCGF 11 (55)
T ss_dssp CCEEEETTTCC
T ss_pred CCcEEeCCCCe
Confidence 45777777775
No 116
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=42.27 E-value=10 Score=30.63 Aligned_cols=26 Identities=38% Similarity=1.160 Sum_probs=18.5
Q ss_pred ceeEecccccc-ccC---------C-CCcccCCCCCc
Q 001136 959 MAKYYCNICKF-FDD---------E-RTVYHCPFCNL 984 (1143)
Q Consensus 959 f~~y~C~~C~~-~d~---------~-~~~yhC~~Cgi 984 (1143)
|.+|-|.+|.+ ||. + .+-|.||.||.
T Consensus 2 m~~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 2 MQKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGV 38 (46)
T ss_dssp CCCEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCC
T ss_pred CCEEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCC
Confidence 67899999987 552 2 34578888875
No 117
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=42.18 E-value=18 Score=34.38 Aligned_cols=33 Identities=27% Similarity=0.483 Sum_probs=20.6
Q ss_pred CCCcccccccccC------CcceEecCCCCccchhhHHH
Q 001136 1021 TNCPICCDFLFTS------SETVRALPCGHYMHLACFQA 1053 (1143)
Q Consensus 1021 ~~CpIC~e~lf~s------~~~v~~lpCgH~fH~~Ci~~ 1053 (1143)
..|.||+..-..+ +.-+.--.|+..||..|+..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~ 40 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQF 40 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCC
Confidence 4588887652211 12223346999999999864
No 118
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=41.78 E-value=13 Score=30.71 Aligned_cols=11 Identities=36% Similarity=1.186 Sum_probs=7.6
Q ss_pred ceeEecccccc
Q 001136 959 MAKYYCNICKF 969 (1143)
Q Consensus 959 f~~y~C~~C~~ 969 (1143)
|++|.|.+|.+
T Consensus 1 m~~y~C~~CGy 11 (52)
T 1e8j_A 1 MDIYVCTVCGY 11 (52)
T ss_dssp CCCEECSSSCC
T ss_pred CCcEEeCCCCe
Confidence 45677777775
No 119
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.22 E-value=15 Score=31.70 Aligned_cols=42 Identities=21% Similarity=0.528 Sum_probs=30.3
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccch
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDM 1071 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~m 1071 (1143)
...|+.|...+......+.. -|..||..|| +|-.|++++.+.
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEE--TTEEECTTTC--------CCTTTCCCCGGG
T ss_pred CCCchhcCCccCCCceEEEe--CccEeccccC--------eECCCCCCCCCC
Confidence 46799999886544443333 3889999887 688899888654
No 120
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=40.61 E-value=5.8 Score=33.65 Aligned_cols=46 Identities=22% Similarity=0.574 Sum_probs=30.9
Q ss_pred CCCCccccccccc-CCcceEecCCCCccchhhHHHHh-----ccCCCCcCCCc
Q 001136 1020 ETNCPICCDFLFT-SSETVRALPCGHYMHLACFQAYT-----CSHYTCPICSK 1066 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~-s~~~v~~lpCgH~fH~~Ci~~wl-----~~~~~CPiCr~ 1066 (1143)
...|+||... +. ...-+.--.|..-||..|+.--. ...+.||.|+.
T Consensus 6 ~~~C~~C~~~-~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 6 SGQCGACGES-YAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp CCCCSSSCCC-CCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCc-cCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 4569999876 33 33334444689999999976431 24688999954
No 121
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.21 E-value=17 Score=30.95 Aligned_cols=40 Identities=25% Similarity=0.477 Sum_probs=29.1
Q ss_pred CCCCccccccccc--CCcceEecCCCCccchhhHHHHhccCCCCcCCCcccc
Q 001136 1020 ETNCPICCDFLFT--SSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLG 1069 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~--s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~ 1069 (1143)
...|+.|...+.. +...+. .-|..||..|| +|-.|+++|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~--a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYIS--FEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEE--CSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEE--ECCcccCcccC--------EeccCCCcCC
Confidence 4569999988664 333332 35899999987 7899998885
No 122
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.83 E-value=16 Score=31.03 Aligned_cols=40 Identities=25% Similarity=0.596 Sum_probs=28.9
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCcccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLG 1069 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~ 1069 (1143)
...|+.|...+......+.. =|..||..|| +|-.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVA--LDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEEC--SSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEE--CCCeEcccCC--------cccccCCcCC
Confidence 35689998886554333333 4889999887 7889998884
No 123
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=39.61 E-value=20 Score=36.07 Aligned_cols=43 Identities=26% Similarity=0.537 Sum_probs=29.6
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccchh
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDMA 1072 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~m~ 1072 (1143)
...|..|...+... ..+ ...-|..||..|+ +|-.|++.+...+
T Consensus 65 ~~~C~~C~~~I~~~-~~v-~~a~~~~~H~~CF--------~C~~C~~~L~~g~ 107 (169)
T 2rgt_A 65 GTKCAACQLGIPPT-QVV-RRAQDFVYHLHCF--------ACVVCKRQLATGD 107 (169)
T ss_dssp SCBCTTTCCBCCTT-SEE-EEETTEEEEGGGC--------BCTTTCCBCCTTC
T ss_pred cccccccccccCCC-cEE-EEcCCceEeeCCC--------cCCCCCCCCCCCC
Confidence 35688998875433 222 2235899999997 8999999886433
No 124
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=39.27 E-value=52 Score=31.00 Aligned_cols=26 Identities=23% Similarity=0.648 Sum_probs=17.5
Q ss_pred cCCCCccchhhHHH---H----hccCCCCcCCC
Q 001136 1040 LPCGHYMHLACFQA---Y----TCSHYTCPICS 1065 (1143)
Q Consensus 1040 lpCgH~fH~~Ci~~---w----l~~~~~CPiCr 1065 (1143)
..|+..||..|+.. . ....-.||-|+
T Consensus 30 ~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 30 ADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp TTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred hhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 46999999999952 1 13345566664
No 125
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=38.88 E-value=14 Score=31.03 Aligned_cols=27 Identities=30% Similarity=0.715 Sum_probs=22.6
Q ss_pred cCcceEEcCCCCCCCcccchhhcccCCCCC
Q 001136 1093 NQVQDILCNDCEQKGAARFHWLYHKCGFCG 1122 (1143)
Q Consensus 1093 ~~~~~i~CndC~~~s~~~~h~l~~kC~~C~ 1122 (1143)
..+..|+|.-||++ .||+--..|..||
T Consensus 13 ~~ktH~~CrRCG~~---syH~qK~~Ca~CG 39 (57)
T 1vq8_1 13 NTTTHTKCRRCGEK---SYHTKKKVCSSCG 39 (57)
T ss_dssp CCCCEEECTTTCSE---EEETTTTEETTTC
T ss_pred CCCccccccccCCh---hhhcccccccccc
Confidence 44678999999984 5788888899999
No 126
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.22 E-value=17 Score=30.79 Aligned_cols=41 Identities=22% Similarity=0.620 Sum_probs=29.2
Q ss_pred CCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccch
Q 001136 1021 TNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDM 1071 (1143)
Q Consensus 1021 ~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~m 1071 (1143)
..|+.|...+......+.. -|..||..|| +|-.|++++.+.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccCC--------cccccCCccCCC
Confidence 4689998886544333333 4889999887 788999888643
No 127
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=36.75 E-value=16 Score=32.98 Aligned_cols=14 Identities=29% Similarity=0.835 Sum_probs=9.9
Q ss_pred cceeEecccccc-cc
Q 001136 958 SMAKYYCNICKF-FD 971 (1143)
Q Consensus 958 ~f~~y~C~~C~~-~d 971 (1143)
.+.+|.|.+|.+ ||
T Consensus 24 em~~y~C~vCGyvYD 38 (81)
T 2kn9_A 24 DYKLFRCIQCGFEYD 38 (81)
T ss_dssp CCCEEEETTTCCEEE
T ss_pred CcceEEeCCCCEEEc
Confidence 467788888876 44
No 128
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=36.56 E-value=16 Score=33.51 Aligned_cols=31 Identities=32% Similarity=0.725 Sum_probs=25.5
Q ss_pred cCcceEEcCCCCCCCcccchhhcccCCCCC-------Cccc
Q 001136 1093 NQVQDILCNDCEQKGAARFHWLYHKCGFCG-------SYNT 1126 (1143)
Q Consensus 1093 ~~~~~i~CndC~~~s~~~~h~l~~kC~~C~-------syNt 1126 (1143)
..+..++|.-||+ ..||+--..|..|| +||=
T Consensus 12 ~~KtHtlCrRCG~---~syH~qK~~Ca~CGyps~r~R~YnW 49 (94)
T 3iz5_l 12 RNKTHTLCVRCGR---RSFHLQKSTCSSCGYPAARIRKYNW 49 (94)
T ss_dssp CCCSEEECTTTCS---EEEEGGGTEETTTCSSCSSCCCCSS
T ss_pred CCCccceecCcCc---hhhhcccccccccCCchhhcccccH
Confidence 3456899999998 45788888999999 7873
No 129
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=36.48 E-value=7.9 Score=38.56 Aligned_cols=30 Identities=30% Similarity=0.738 Sum_probs=23.0
Q ss_pred ceeEeccccccccCC--CCcccCCCCCccccC
Q 001136 959 MAKYYCNICKFFDDE--RTVYHCPFCNLCRVG 988 (1143)
Q Consensus 959 f~~y~C~~C~~~d~~--~~~yhC~~CgiCr~g 988 (1143)
-..|.|+.|.+---. ++-|||+.||.|-.-
T Consensus 96 k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~ 127 (143)
T 2dkt_A 96 KRQYHCESCGICRIGPKEDFFHCLKCNLCLTT 127 (143)
T ss_dssp SSEEEETTTTEEEESCGGGEEEETTTTEEEEG
T ss_pred CceecCCCCCceeccCCcCcEECCcCCeeecc
Confidence 456888888776433 889999999999643
No 130
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.43 E-value=15 Score=31.11 Aligned_cols=40 Identities=28% Similarity=0.643 Sum_probs=28.7
Q ss_pred CCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccc
Q 001136 1021 TNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGD 1070 (1143)
Q Consensus 1021 ~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~ 1070 (1143)
..|+.|...+...... +..-|..||..|| +|-.|++++..
T Consensus 6 ~~C~~C~~~I~~~~~~--~~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGSRK--LEYGGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSSCE--ECSTTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCccCCCccccCccE--EEECccccCcccC--------eECCCCCcCCC
Confidence 5689998886543332 2335899999887 78899988864
No 131
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=36.42 E-value=17 Score=30.57 Aligned_cols=18 Identities=22% Similarity=0.543 Sum_probs=12.3
Q ss_pred cCCCCcCCCccccchhhh
Q 001136 1057 SHYTCPICSKSLGDMAIY 1074 (1143)
Q Consensus 1057 ~~~~CPiCr~s~~~m~~~ 1074 (1143)
..+.|+.|.+.+.....+
T Consensus 28 ~~~~C~~C~~~f~~~~~l 45 (82)
T 2kmk_A 28 RPYPCQYCGKRFHQKSDM 45 (82)
T ss_dssp CCEECSSSCCEESSHHHH
T ss_pred CCeeCCcCChhhCCHHHH
Confidence 347788888877655443
No 132
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=35.96 E-value=14 Score=32.39 Aligned_cols=13 Identities=31% Similarity=0.907 Sum_probs=9.3
Q ss_pred cceeEeccccccc
Q 001136 958 SMAKYYCNICKFF 970 (1143)
Q Consensus 958 ~f~~y~C~~C~~~ 970 (1143)
.|.+|.|.+|-..
T Consensus 4 ~m~~y~C~vCGyi 16 (70)
T 1dx8_A 4 DEGKYECEACGYI 16 (70)
T ss_dssp CSSCEEETTTCCE
T ss_pred CCceEEeCCCCEE
Confidence 4677888888763
No 133
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.63 E-value=14 Score=31.79 Aligned_cols=38 Identities=16% Similarity=0.499 Sum_probs=27.5
Q ss_pred CCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccc
Q 001136 1021 TNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGD 1070 (1143)
Q Consensus 1021 ~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~ 1070 (1143)
..|+.|...+.. ..+ ..-|..||..|| +|-.|++++.+
T Consensus 6 ~~C~~C~~~I~~--~~v--~a~~~~wH~~CF--------~C~~C~~~L~~ 43 (73)
T 1wig_A 6 SGCDSCEKYITG--RVL--EAGEKHYHPSCA--------LCVRCGQMFAE 43 (73)
T ss_dssp CSCSSSCCCCSS--CCB--CCSSCCBCTTTS--------CCSSSCCCCCS
T ss_pred CCcccCCCEecC--eeE--EeCCCCCCCCcC--------EeCCCCCCCCC
Confidence 468888887643 222 345899999886 78899988863
No 134
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=35.23 E-value=17 Score=33.46 Aligned_cols=30 Identities=33% Similarity=0.824 Sum_probs=25.4
Q ss_pred cCcceEEcCCCCCCCcccchhhcccCCCCC-------Ccc
Q 001136 1093 NQVQDILCNDCEQKGAARFHWLYHKCGFCG-------SYN 1125 (1143)
Q Consensus 1093 ~~~~~i~CndC~~~s~~~~h~l~~kC~~C~-------syN 1125 (1143)
..+..++|.-||+ ..||+--..|..|| +||
T Consensus 12 ~~KtHtlCrRCG~---~syH~qK~~Ca~CGyps~r~R~Yn 48 (94)
T 4a18_A 12 HQKTHTLCRRCGK---ATYHKQKLRCAACGYPDAKMRRYD 48 (94)
T ss_dssp CCCCEEECTTTCS---EEEETTTTEESSSCGGGSSCCCCT
T ss_pred CCCccceecCcCc---hhhhhccccccccCCcHHHhcCcc
Confidence 3456899999998 45788888999999 999
No 135
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=34.98 E-value=17 Score=31.84 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=15.6
Q ss_pred eeEeccccccc--cCCCCcccCCCCCccccC
Q 001136 960 AKYYCNICKFF--DDERTVYHCPFCNLCRVG 988 (1143)
Q Consensus 960 ~~y~C~~C~~~--d~~~~~yhC~~CgiCr~g 988 (1143)
-.|.|..|..- -.+.+..+|+.||--.+-
T Consensus 27 v~Y~C~~CG~~~e~~~~d~irCp~CG~RILy 57 (70)
T 1twf_L 27 LKYICAECSSKLSLSRTDAVRCKDCGHRILL 57 (70)
T ss_dssp CCEECSSSCCEECCCTTSTTCCSSSCCCCCB
T ss_pred EEEECCCCCCcceeCCCCCccCCCCCceEeE
Confidence 45666666653 122455577777754433
No 136
>3kdw_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Bacteroides vulgatus atcc 8482} PDB: 3g6i_A*
Probab=34.92 E-value=2.9e+02 Score=28.98 Aligned_cols=54 Identities=6% Similarity=-0.042 Sum_probs=33.5
Q ss_pred hHHHHHhccCCHHHHHHHHHHHHhcCChhhhHhhhhhhccCCCHHHHHHHHHHhh
Q 001136 167 QVFPLLTQHFSLEEQASLVWQFFCSIPVNMMAEFLPWLSSSISTNEYQDMRKCLS 221 (1143)
Q Consensus 167 ~lfPLa~~~LS~eEw~~L~~~f~~sip~~~m~~~Lpwl~~~l~~eEr~~ll~~l~ 221 (1143)
.++.-+...||+++...|-..+--+.=+-.+-. .-=|++.++++|++.++.-|.
T Consensus 113 ~~~a~L~~~Lt~eQie~Vkd~mTyg~v~~T~k~-y~~mvP~Lteeek~~I~~~L~ 166 (221)
T 3kdw_A 113 AFPADLSLYLDAKQIDAVKDGMTYGVVMVTYKA-TVDMIPTLKEEEKAQIMAWLV 166 (221)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHTTTTHHHHHHHH-HHHHCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHcccceeeehhhHHH-HHHHcCcccHHHHHHHHHHHH
Confidence 356678888999888887665543311111111 224567888888887777664
No 137
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=34.86 E-value=21 Score=30.70 Aligned_cols=40 Identities=30% Similarity=0.555 Sum_probs=29.0
Q ss_pred CCCccccccccc---CCcceEecCCCCccchhhHHHHhccCCCCcCCCccccc
Q 001136 1021 TNCPICCDFLFT---SSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGD 1070 (1143)
Q Consensus 1021 ~~CpIC~e~lf~---s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~ 1070 (1143)
..|+.|...+.. ....+.. =|..||..|| +|-.|++++..
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAY--EGQSWHDYCF--------HCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEE--TTEEEETTTC--------BCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCceeEEE--CcceeCcccC--------EehhcCCCCCC
Confidence 569999888664 3343433 4889999886 78899988863
No 138
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=34.83 E-value=13 Score=27.26 Aligned_cols=29 Identities=31% Similarity=0.722 Sum_probs=18.8
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhH
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACF 1051 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci 1051 (1143)
...|+.|...++.- +.+ ..=|..||..||
T Consensus 3 ~~~C~~C~k~Vy~~-Ek~--~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPT-EKV--NCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGG-GCC--CSSSSCCCGGGC
T ss_pred CCcCCccCCEEecc-eeE--EECCeEecccCC
Confidence 45688888776544 322 234788888885
No 139
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=34.71 E-value=26 Score=31.26 Aligned_cols=18 Identities=33% Similarity=0.678 Sum_probs=12.7
Q ss_pred cCCCCcCCCccccchhhh
Q 001136 1057 SHYTCPICSKSLGDMAIY 1074 (1143)
Q Consensus 1057 ~~~~CPiCr~s~~~m~~~ 1074 (1143)
..+.|++|.+.+.....+
T Consensus 44 ~~~~C~~C~~~f~~~~~l 61 (106)
T 2ee8_A 44 RPYTCDICHKAFRRQDHL 61 (106)
T ss_dssp CCCBCSSSCCBCSCHHHH
T ss_pred CCcCCCCccchhCCHHHH
Confidence 358899998888655443
No 140
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=33.74 E-value=15 Score=33.52 Aligned_cols=17 Identities=29% Similarity=0.817 Sum_probs=11.4
Q ss_pred CCcceeEecccccc-ccC
Q 001136 956 GLSMAKYYCNICKF-FDD 972 (1143)
Q Consensus 956 ~~~f~~y~C~~C~~-~d~ 972 (1143)
+..|.+|.|.+|.+ ||.
T Consensus 30 ~~~m~~y~C~vCGyvYD~ 47 (87)
T 1s24_A 30 GKAYLKWICITCGHIYDE 47 (87)
T ss_dssp --CCCEEEETTTTEEEET
T ss_pred ccCCceEECCCCCeEecC
Confidence 45688899999985 553
No 141
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=33.03 E-value=9.3 Score=39.33 Aligned_cols=68 Identities=29% Similarity=0.579 Sum_probs=44.4
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccchhhhhhhhHHHHhhcCCChhhhcCcceEE
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDMAIYFGMIDALLAAEELPEEYRNQVQDIL 1099 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~m~~~~~~ld~~i~~~p~P~~y~~~~~~i~ 1099 (1143)
...|+.|...+... ..+.. -|..||..|| +|-.|+++|.... + ......++
T Consensus 115 ~~~C~~C~~~I~~~-~~v~a--~~~~~H~~CF--------~C~~C~~~L~~~~-~-----------------~~~~g~~y 165 (192)
T 1b8t_A 115 SDGCPRCGQAVYAA-EKVIG--AGKSWHKSCF--------RCAKCGKSLESTT-L-----------------ADKDGEIY 165 (192)
T ss_dssp CEECTTTSCEECSS-SCEEE--TTEEECTTTC--------BCTTTCCBCCSSS-E-----------------EEETTEEE
T ss_pred CCcCCCCCCEecCc-EEEec--CCCccchhcC--------CccccCCCCCCCc-c-----------------cccCCEEe
Confidence 34599999886543 33433 4889999886 7899999886432 2 12233577
Q ss_pred cCCCCCCCcccchhhcccCCCCC
Q 001136 1100 CNDCEQKGAARFHWLYHKCGFCG 1122 (1143)
Q Consensus 1100 CndC~~~s~~~~h~l~~kC~~C~ 1122 (1143)
|.+|-.+ .++-||..||
T Consensus 166 C~~cy~~------~f~~kc~~C~ 182 (192)
T 1b8t_A 166 CKGCYAK------NFGPKGFGFG 182 (192)
T ss_dssp EHHHHHH------HTCCCCCCCC
T ss_pred CHHHHHH------hcCCcCCCCC
Confidence 8777643 3466787776
No 142
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.34 E-value=28 Score=30.32 Aligned_cols=41 Identities=27% Similarity=0.630 Sum_probs=29.0
Q ss_pred CCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccch
Q 001136 1021 TNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDM 1071 (1143)
Q Consensus 1021 ~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~m 1071 (1143)
..|+.|...+......+.. =|..||..|| +|-.|++.|...
T Consensus 16 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEY--KGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCEEEC--SSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CcCccCCcccccCceEEEE--CccccccccC--------chhhCCCccCCC
Confidence 5699998886543333333 4889999887 788899888643
No 143
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=32.23 E-value=19 Score=31.44 Aligned_cols=47 Identities=21% Similarity=0.545 Sum_probs=30.4
Q ss_pred CCCcccccccccCCcceEecCCCCccchhhHHHHhc----cCCCCcCCCccc
Q 001136 1021 TNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTC----SHYTCPICSKSL 1068 (1143)
Q Consensus 1021 ~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~----~~~~CPiCr~s~ 1068 (1143)
..|+||... .....-+.--.|.-.||..|+..-.. ..+.||.|...+
T Consensus 19 ~~C~~C~~~-~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 19 WICPGCNKP-DDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp ECBTTTTBC-CSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred cCCCCCCCC-CCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 359999865 22222233336899999999976432 468899996543
No 144
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=31.23 E-value=7.4 Score=35.74 Aligned_cols=17 Identities=18% Similarity=0.600 Sum_probs=11.8
Q ss_pred CCCCcCCCccccchhhh
Q 001136 1058 HYTCPICSKSLGDMAIY 1074 (1143)
Q Consensus 1058 ~~~CPiCr~s~~~m~~~ 1074 (1143)
.+.||+|.+.+.....+
T Consensus 66 ~~~C~~C~~~f~~~~~l 82 (124)
T 2dlq_A 66 VFTCSVCQETFRRRMEL 82 (124)
T ss_dssp CEECSSSCCEESSHHHH
T ss_pred CeECCCCCCccCCHHHH
Confidence 46788888877665544
No 145
>2hmq_A Hemerythrin; oxygen transport; 1.66A {Themiste dyscritum} SCOP: a.24.4.1 PDB: 2hmz_A 1hmd_A 1hmo_A 1i4y_A 1i4z_A 1hrb_A
Probab=30.74 E-value=98 Score=29.00 Aligned_cols=55 Identities=11% Similarity=0.143 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhhhhhh----hhhhhhcCCHHHHHHHHHHHhhcCCHHHHHHHhhhhcCCC
Q 001136 413 ADQIMETIERHFHKVEVQV----LPLARNHFSFKRQREILYQSLCEMPLKLIERVLPWLMGSL 471 (1143)
Q Consensus 413 l~~l~~~L~~Hf~kEE~qv----fPL~~k~~S~eEQ~~L~~~~l~~~Pl~ll~~vlpW~~~~l 471 (1143)
++.|..-...||..||.-. +|-+..| .++-+.++.+..... .++..+-.||+.++
T Consensus 44 l~~L~~y~~~HF~~EE~lM~~~~yp~~~~H--~~~H~~f~~~v~~l~--~l~~~l~~Wl~~HI 102 (113)
T 2hmq_A 44 LNELRRCTGKHFLNEQQLMQASQYAGYAEH--KKAHDDFIHKLDTWD--GDVTYAKNWLVNHI 102 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCTTHHHH--HHHHHHHHHHHHTCC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcHHHH--HHHHHHHHHHHHHHH--HHHHHHHHHHHHHh
Confidence 8899999999999999654 6766666 456666666654443 66666677776554
No 146
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=29.77 E-value=25 Score=29.49 Aligned_cols=42 Identities=21% Similarity=0.522 Sum_probs=29.9
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccch
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDM 1071 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~m 1071 (1143)
...|+.|...+......+. .=|..||..|+ +|-.|++++.+.
T Consensus 11 ~~~C~~C~~~i~~~e~~~~--~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN--SNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE--ETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEE--eCcCeeCcCCC--------cccCCCCCCCCC
Confidence 4579999988654432222 34788999988 788999988654
No 147
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=29.66 E-value=33 Score=31.24 Aligned_cols=87 Identities=23% Similarity=0.442 Sum_probs=45.9
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccchhhhhhhhHHHHhhcCCChhhhcCcceEE
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDMAIYFGMIDALLAAEELPEEYRNQVQDIL 1099 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~m~~~~~~ld~~i~~~p~P~~y~~~~~~i~ 1099 (1143)
...|++|... |.+...+. .|.. .-.....+.||+|.+.+.....+..-+ ....+ ........
T Consensus 7 ~~~C~~C~~~-f~~~~~l~-------~H~~--~h~~~~~~~C~~C~~~f~~~~~l~~H~----~~~~~----~~~~~~~~ 68 (124)
T 2dlq_A 7 GVECPTCHKK-FLSKYYLK-------VHNR--KHTGEKPFECPKCGKCYFRKENLLEHE----ARNCM----NRSEQVFT 68 (124)
T ss_dssp SCCCTTTCCC-CSSHHHHH-------HHHH--HHSSCCSCBCTTTCCBCSSHHHHHHHH----HHCCC----CSCCCCEE
T ss_pred CCCCCCCCCc-CCCHHHHH-------HHHH--hCCCCCCeECCCCCchhcCHHHHHHHH----hhhhc----CCCCCCeE
Confidence 4568888765 55443221 1110 011134589999999887655443221 11100 01122468
Q ss_pred cCCCCCCCc----ccchhhcc------cCCCCCCc
Q 001136 1100 CNDCEQKGA----ARFHWLYH------KCGFCGSY 1124 (1143)
Q Consensus 1100 CndC~~~s~----~~~h~l~~------kC~~C~sy 1124 (1143)
|..|++... ...|...| +|..|+..
T Consensus 69 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 103 (124)
T 2dlq_A 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQ 103 (124)
T ss_dssp CSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCE
T ss_pred CCCCCCccCCHHHHHHHHHHcCCCCCccCCCccch
Confidence 999998764 34455444 37777753
No 148
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=29.18 E-value=32 Score=27.65 Aligned_cols=44 Identities=20% Similarity=0.575 Sum_probs=27.0
Q ss_pred CCcccccccccCCcceEecCCCCccchhhHHHHh----ccCCCCcCCCc
Q 001136 1022 NCPICCDFLFTSSETVRALPCGHYMHLACFQAYT----CSHYTCPICSK 1066 (1143)
Q Consensus 1022 ~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl----~~~~~CPiCr~ 1066 (1143)
.|.||... -....-+.--.|.-.||..|++.=+ .....||.|..
T Consensus 2 ~C~vC~~~-~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKK-GEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCS-SCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCC-CCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 47788754 1122222333699999999997532 23466888864
No 149
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=29.14 E-value=15 Score=35.29 Aligned_cols=31 Identities=19% Similarity=0.522 Sum_probs=19.6
Q ss_pred ceeEecccccccc---CCCCcccCCCCCccccCC
Q 001136 959 MAKYYCNICKFFD---DERTVYHCPFCNLCRVGG 989 (1143)
Q Consensus 959 f~~y~C~~C~~~d---~~~~~yhC~~CgiCr~g~ 989 (1143)
-++|+|+-|.--+ ..-+|+||..||-=-.|+
T Consensus 58 ~akytCPfCGk~~vKR~avGIW~C~~Cgk~fAGG 91 (116)
T 3cc2_Z 58 NEDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGG 91 (116)
T ss_dssp HSCEECSSSCCEEEEEEETTEEEETTTCCEEECC
T ss_pred ccCCcCCCCCCceeEecCceeEECCCCCCEEECC
Confidence 3566666665311 115788888888776665
No 150
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=29.00 E-value=17 Score=33.60 Aligned_cols=30 Identities=27% Similarity=0.686 Sum_probs=17.3
Q ss_pred eeEeccccccccC---CCCcccCCCCCccccCC
Q 001136 960 AKYYCNICKFFDD---ERTVYHCPFCNLCRVGG 989 (1143)
Q Consensus 960 ~~y~C~~C~~~d~---~~~~yhC~~CgiCr~g~ 989 (1143)
++|.|+-|.--.= .-+|+||..||-=-.|+
T Consensus 35 ~ky~CpfCgk~~vkR~a~GIW~C~~C~~~~AGG 67 (92)
T 3izc_m 35 ARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGG 67 (92)
T ss_dssp SCCCCSSSCSSCCEEEETTEEECTTTCCEEECC
T ss_pred cCCcCCCCCCceeeecccceEEcCCCCCEEeCC
Confidence 4555555542211 15778888887766554
No 151
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=28.80 E-value=29 Score=34.46 Aligned_cols=65 Identities=17% Similarity=0.347 Sum_probs=33.8
Q ss_pred eeeccccccccccCCCCCCCCCCCCcceeEecccccc-c-----cCCCCcccCCCCCccccCCCCCccccccCCcccc
Q 001136 933 EMMCMHCLKIQAIGPNCTTPSCNGLSMAKYYCNICKF-F-----DDERTVYHCPFCNLCRVGGGLGVDFFHCMTCNCC 1004 (1143)
Q Consensus 933 ~~~C~~C~~~q~~~~~C~~~~cc~~~f~~y~C~~C~~-~-----d~~~~~yhC~~CgiCr~g~~l~~~~~hC~~C~~C 1004 (1143)
.+.|..|+..+...+.-.. -..-.|....|..|+. | ..+.+.| =++|.+|.-|+. -+=|++|-.+
T Consensus 14 ~i~Ct~Cg~~~~~~q~~~~--~~HPll~v~~C~~C~~~y~~~~~~~d~Dg~-~d~C~vC~~GG~----LlcCD~Cpr~ 84 (142)
T 2lbm_A 14 IVSCTACGQQVNHFQKDSI--YRHPSLQVLICKNCFKYYMSDDISRDSDGM-DEQCRWCAEGGN----LICCDFCHNA 84 (142)
T ss_dssp CCBCTTTCSBSTTTCSSSE--EEETTTTEEEEHHHHHHHHHSCCCBCTTSC-BCSCSSSCCCSS----EEECSSSCCE
T ss_pred CCEecCCCCccccccccch--hcCCCccccccHHHHHHHhcCCceecCCCC-CCeecccCCCCc----EEeCCCCCCe
Confidence 5566666665432211000 0112355556666664 1 1112333 378999999875 5678877644
No 152
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.70 E-value=31 Score=29.09 Aligned_cols=40 Identities=25% Similarity=0.800 Sum_probs=29.0
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccch
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDM 1071 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~m 1071 (1143)
...|+.|...+.. ..+. .-|..||..|| +|-.|++.|.+.
T Consensus 5 ~~~C~~C~~~I~~--~~~~--a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG--RVIK--AMNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS--CCEE--ETTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCcCccCCCEecc--eEEE--ECcccccccCC--------EeCCCCCcCCCC
Confidence 3568999888652 3333 34889999987 788999888754
No 153
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=28.54 E-value=34 Score=26.67 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=11.8
Q ss_pred CCCCcCCCccccchhhh
Q 001136 1058 HYTCPICSKSLGDMAIY 1074 (1143)
Q Consensus 1058 ~~~CPiCr~s~~~m~~~ 1074 (1143)
.+.|++|.+.+.....+
T Consensus 4 ~~~C~~C~~~f~~~~~l 20 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYL 20 (57)
T ss_dssp -CBCTTTCCBCSCHHHH
T ss_pred CccCCCCcchhCChHHH
Confidence 57888998888665544
No 154
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=28.42 E-value=27 Score=33.00 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=22.6
Q ss_pred cceEEcCCCCCCCcccchhhcccCCCCCCccccc
Q 001136 1095 VQDILCNDCEQKGAARFHWLYHKCGFCGSYNTRL 1128 (1143)
Q Consensus 1095 ~~~i~CndC~~~s~~~~h~l~~kC~~C~syNt~~ 1128 (1143)
.....|.+||-...... ...-+|+.|+|-|...
T Consensus 65 v~p~~C~~CG~~F~~~~-~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 65 IKPAQCRKCGFVFKAEI-NIPSRCPKCKSEWIEE 97 (105)
T ss_dssp ECCCBBTTTCCBCCCCS-SCCSSCSSSCCCCBCC
T ss_pred EECcChhhCcCeecccC-CCCCCCcCCCCCccCC
Confidence 34578999997651111 2346899999999764
No 155
>2hmq_A Hemerythrin; oxygen transport; 1.66A {Themiste dyscritum} SCOP: a.24.4.1 PDB: 2hmz_A 1hmd_A 1hmo_A 1i4y_A 1i4z_A 1hrb_A
Probab=28.32 E-value=85 Score=29.44 Aligned_cols=45 Identities=20% Similarity=0.090 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001136 111 ARKYSLEHEGESNLFDHLFQLLNSYTQNDESFPKELASCSRALQTSINQHMSKEEQQV 168 (1143)
Q Consensus 111 l~~le~EH~~i~~ll~~L~~~l~~~~~~~~~~~~eLa~~l~~l~~~L~~HL~~EE~~l 168 (1143)
+..+..||+++-.++++|.++ ..- . .++.|.+....|+..||...
T Consensus 18 ~~~ID~qHk~L~~~in~l~~a-~~~--------~----~l~~L~~y~~~HF~~EE~lM 62 (113)
T 2hmq_A 18 YTIIDDEHKTLFNGILLLSQA-DNA--------D----HLNELRRCTGKHFLNEQQLM 62 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC-CSH--------H----HHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhh-cch--------H----HHHHHHHHHHHHHHHHHHHH
Confidence 357889999999998887765 321 1 28889999999999999865
No 156
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=28.09 E-value=17 Score=33.54 Aligned_cols=30 Identities=30% Similarity=0.886 Sum_probs=16.7
Q ss_pred eeEecccccccc---CCCCcccCCCCCccccCC
Q 001136 960 AKYYCNICKFFD---DERTVYHCPFCNLCRVGG 989 (1143)
Q Consensus 960 ~~y~C~~C~~~d---~~~~~yhC~~CgiCr~g~ 989 (1143)
++|.|+.|.=.. ..-+|+||..||---.|+
T Consensus 35 ~ky~CpfCgk~~vkR~a~GIW~C~~Cg~~~AGG 67 (92)
T 3iz5_m 35 SKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGG 67 (92)
T ss_dssp SCBCCTTTCSSCBEEEETTEEECSSSCCEEECC
T ss_pred ccccCcccCCCeeEecCcceEEcCCCCCEEeCC
Confidence 455555554221 115777777777666554
No 157
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=27.94 E-value=16 Score=33.17 Aligned_cols=29 Identities=21% Similarity=0.629 Sum_probs=20.0
Q ss_pred eEeccccc---cccCCCCcccCCCCCccccCC
Q 001136 961 KYYCNICK---FFDDERTVYHCPFCNLCRVGG 989 (1143)
Q Consensus 961 ~y~C~~C~---~~d~~~~~yhC~~CgiCr~g~ 989 (1143)
+|.|+.|. +|+..-++.+|++||---.|+
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCSYCDYKFTGG 58 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCCEEECC
T ss_pred cCcCCCCCCcceeccCCCeEECCCCCCEecCC
Confidence 45555554 344457899999999887775
No 158
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=27.76 E-value=42 Score=38.60 Aligned_cols=66 Identities=20% Similarity=0.417 Sum_probs=41.8
Q ss_pred cCCccccccccc-ccccccccccCCCCcccccccccCCcceEec--CCCCccchhhHHHHhc----------cCCCCcCC
Q 001136 998 CMTCNCCLGLKL-LNHKCLEKCLETNCPICCDFLFTSSETVRAL--PCGHYMHLACFQAYTC----------SHYTCPIC 1064 (1143)
Q Consensus 998 C~~C~~C~~~~~-~~H~C~e~~~~~~CpIC~e~lf~s~~~v~~l--pCgH~fH~~Ci~~wl~----------~~~~CPiC 1064 (1143)
.--|..|...-+ .....-+...+..|-+|.+. ++-+..- .|...|+..||+..+. ..-.|=+|
T Consensus 70 v~lC~~Ck~~y~~~~f~~D~DG~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C 145 (386)
T 2pv0_B 70 GGICAPCKDKFLDALFLYDDDGYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLC 145 (386)
T ss_dssp SBCCHHHHHHHHTTTTCBCSSSSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTT
T ss_pred cchhhHHHHHHhccCcccCCCCCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEc
Confidence 444555544332 34444566667889999864 3333333 6999999999999862 24567777
Q ss_pred Ccc
Q 001136 1065 SKS 1067 (1143)
Q Consensus 1065 r~s 1067 (1143)
.-.
T Consensus 146 ~p~ 148 (386)
T 2pv0_B 146 LPS 148 (386)
T ss_dssp SSC
T ss_pred CCc
Confidence 543
No 159
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.69 E-value=24 Score=30.14 Aligned_cols=24 Identities=25% Similarity=0.664 Sum_probs=21.1
Q ss_pred ceEEcCCCCCCCcccchhhcccCCCCC
Q 001136 1096 QDILCNDCEQKGAARFHWLYHKCGFCG 1122 (1143)
Q Consensus 1096 ~~i~CndC~~~s~~~~h~l~~kC~~C~ 1122 (1143)
..|+|.-||++ .||+--..|..||
T Consensus 16 tH~lCrRCG~~---syH~qK~~Ca~CG 39 (62)
T 3j21_e 16 THIRCRRCGRV---SYNVKKGYCAACG 39 (62)
T ss_dssp CCCBCSSSCSB---CEETTTTEETTTC
T ss_pred ceeeecccCcc---hhccccccccccC
Confidence 68999999985 5788888999999
No 160
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=27.08 E-value=23 Score=30.53 Aligned_cols=66 Identities=27% Similarity=0.476 Sum_probs=42.1
Q ss_pred CCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccchhhhhhhhHHHHhhcCCChhhhcCcceEEcC
Q 001136 1022 NCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDMAIYFGMIDALLAAEELPEEYRNQVQDILCN 1101 (1143)
Q Consensus 1022 ~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~m~~~~~~ld~~i~~~p~P~~y~~~~~~i~Cn 1101 (1143)
.|+.|...+... ..+..+ |..||..|| +|..|++++.... ++ .....++|.
T Consensus 2 ~C~~C~~~I~~~-~~v~a~--~~~~H~~CF--------~C~~C~~~L~~~~-~~-----------------~~~g~~yC~ 52 (76)
T 1iml_A 2 KCPKCDKEVYFA-ERVTSL--GKDWHRPCL--------KCEKCGKTLTSGG-HA-----------------EHEGKPYCN 52 (76)
T ss_dssp BCTTTSSBCCGG-GEEEET--TEEEETTTC--------BCTTTCCBCCTTT-EE-----------------EETTEEEET
T ss_pred cCCCCCCEEECc-eEEEEC--CccccCCCC--------CccccCccCCCCc-eE-----------------CcCCeEeeC
Confidence 488888875433 334444 899999887 7999999886542 21 122356787
Q ss_pred -CCCCCCcccchhhcccCCCCC
Q 001136 1102 -DCEQKGAARFHWLYHKCGFCG 1122 (1143)
Q Consensus 1102 -dC~~~s~~~~h~l~~kC~~C~ 1122 (1143)
+|-.+ .++-||..|+
T Consensus 53 ~~cy~~------~f~~~C~~C~ 68 (76)
T 1iml_A 53 HPCYSA------MFGPKGFGRG 68 (76)
T ss_dssp TTHHHH------HSSCCCSSCC
T ss_pred HHHHHH------HhCccCCCcC
Confidence 56532 2456788776
No 161
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=26.74 E-value=17 Score=34.12 Aligned_cols=31 Identities=29% Similarity=0.625 Sum_probs=18.6
Q ss_pred ceeEecccccccc---CCCCcccCCCCCccccCC
Q 001136 959 MAKYYCNICKFFD---DERTVYHCPFCNLCRVGG 989 (1143)
Q Consensus 959 f~~y~C~~C~~~d---~~~~~yhC~~CgiCr~g~ 989 (1143)
-++|.|+-|.--. ..-+|+||..||---.|+
T Consensus 34 ~aky~CpfCgk~~vKR~a~GIW~C~kCg~~~AGG 67 (103)
T 4a17_Y 34 HAKYGCPFCGKVAVKRAAVGIWKCKPCKKIIAGG 67 (103)
T ss_dssp HSCEECTTTCCEEEEEEETTEEEETTTTEEEECC
T ss_pred hcCCCCCCCCCceeeecCcceEEcCCCCCEEeCC
Confidence 3566666664221 115778888887766664
No 162
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.10 E-value=37 Score=29.54 Aligned_cols=58 Identities=29% Similarity=0.611 Sum_probs=37.6
Q ss_pred CCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccchhhhhhhhHHHHhhcCCChhhhcCcceEEc
Q 001136 1021 TNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDMAIYFGMIDALLAAEELPEEYRNQVQDILC 1100 (1143)
Q Consensus 1021 ~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~m~~~~~~ld~~i~~~p~P~~y~~~~~~i~C 1100 (1143)
..|..|...+..+...+. .=|..||..|| +|-.|+++|.+.. |......++|
T Consensus 16 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~~~------------------f~~~~~~~~C 67 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELF--YEDRHFHEGCF--------RCCRCQRSLADEP------------------FTCQDSELLC 67 (82)
T ss_dssp CBCTTTCCBCCSSCCBCC--CSSCCCBTTTS--------BCTTTCCBCSSCC------------------EEEETTEEEE
T ss_pred CcCccCCCccccCcEEEE--eCCccccccCC--------eecCCCCccCCCc------------------cEeeCCEEEC
Confidence 468899888653333222 24889999887 6889998886321 1122346889
Q ss_pred CCCCCC
Q 001136 1101 NDCEQK 1106 (1143)
Q Consensus 1101 ndC~~~ 1106 (1143)
.+|-.+
T Consensus 68 ~~c~~~ 73 (82)
T 2ehe_A 68 NDCYCS 73 (82)
T ss_dssp TTTSSC
T ss_pred HHHHhh
Confidence 988754
No 163
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=26.06 E-value=17 Score=26.34 Aligned_cols=17 Identities=29% Similarity=0.727 Sum_probs=14.3
Q ss_pred CCCCcCCCccccchhhh
Q 001136 1058 HYTCPICSKSLGDMAIY 1074 (1143)
Q Consensus 1058 ~~~CPiCr~s~~~m~~~ 1074 (1143)
.++||+|+..++|+..+
T Consensus 3 k~~CpvCk~q~Pd~kt~ 19 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMDTL 19 (28)
T ss_dssp CEECTTSSCEESSHHHH
T ss_pred cccCccccccCcChHHH
Confidence 56899999999988765
No 164
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=25.97 E-value=32 Score=32.83 Aligned_cols=26 Identities=23% Similarity=0.552 Sum_probs=13.3
Q ss_pred eEecccccc-ccCCCCcc-cCCCCCccc
Q 001136 961 KYYCNICKF-FDDERTVY-HCPFCNLCR 986 (1143)
Q Consensus 961 ~y~C~~C~~-~d~~~~~y-hC~~CgiCr 986 (1143)
.|.|..|.. |.-+...+ .||.||--.
T Consensus 73 ~~~C~~CG~~~e~~~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 73 ELECKDCSHVFKPNALDYGVCEKCHSKN 100 (119)
T ss_dssp EEECSSSSCEECSCCSTTCCCSSSSSCC
T ss_pred eEEcCCCCCEEeCCCCCCCcCccccCCC
Confidence 444444432 22234556 677777654
No 165
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.96 E-value=35 Score=29.33 Aligned_cols=40 Identities=33% Similarity=0.711 Sum_probs=29.3
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGD 1070 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~ 1070 (1143)
...|+.|...+... ..+. .-|..||..|+ +|..|+++|..
T Consensus 9 ~~~C~~C~~~I~~~-~~v~--a~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFA-EKVS--SLGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTT-TEEE--ETTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECC-eEEE--ECCeEeeCCCC--------CCCCCCCccCC
Confidence 35699999886533 3333 34889999887 79999998864
No 166
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=25.84 E-value=23 Score=29.56 Aligned_cols=38 Identities=21% Similarity=0.426 Sum_probs=27.9
Q ss_pred CCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccc
Q 001136 1021 TNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGD 1070 (1143)
Q Consensus 1021 ~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~ 1070 (1143)
..|+.|...+. ... +..-|..||..|+ +|-.|++++..
T Consensus 6 ~~C~~C~~~I~--~~~--~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE--GRV--VNAMGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC--SCE--ECCTTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCcccCCEec--ceE--EEECccccccCcC--------EECCCCCCCCC
Confidence 46889988865 222 3345889999887 78899988864
No 167
>2mhr_A Myohemerythrin; oxygen binding; 1.30A {Themiste zostericola} SCOP: a.24.4.1 PDB: 1a7d_A 1a7e_A
Probab=25.67 E-value=83 Score=29.66 Aligned_cols=45 Identities=13% Similarity=0.036 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001136 111 ARKYSLEHEGESNLFDHLFQLLNSYTQNDESFPKELASCSRALQTSINQHMSKEEQQV 168 (1143)
Q Consensus 111 l~~le~EH~~i~~ll~~L~~~l~~~~~~~~~~~~eLa~~l~~l~~~L~~HL~~EE~~l 168 (1143)
+..+..||+++-.++++|.++.. + . .++.|.+....|+..||...
T Consensus 18 ~~~ID~qHk~L~~~in~l~~a~~----~-----~----~l~~L~~y~~~HF~~EE~~M 62 (118)
T 2mhr_A 18 YEQLDEEHKKIFKGIFDCIRDNS----A-----P----NLATLVKVTTNHFTHEEAMM 62 (118)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCC----H-----H----HHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhcc----h-----h----HHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999988776521 0 1 18889999999999999975
No 168
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=25.58 E-value=25 Score=33.49 Aligned_cols=72 Identities=26% Similarity=0.453 Sum_probs=44.4
Q ss_pred CCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccchhhhhhhhHHHHhhcCCChhhhcCcceEEcC
Q 001136 1022 NCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDMAIYFGMIDALLAAEELPEEYRNQVQDILCN 1101 (1143)
Q Consensus 1022 ~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~m~~~~~~ld~~i~~~p~P~~y~~~~~~i~Cn 1101 (1143)
.|+.|...+......+.. -|..||..|| +|-.|++.|...+.++ .....++|.
T Consensus 10 ~C~~C~~~I~~~e~~~~a--~~~~~H~~CF--------~C~~C~~~L~~g~~f~-----------------~~~g~~yC~ 62 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRV--KDKVYHLECF--------KCAACQKHFSVGDRYL-----------------LINSDIVCE 62 (123)
T ss_dssp CCSSSSCCCCTTCCCCCC--SSCCCCTTTC--------BCTTTCCBCCTTCEEE-----------------ECSSSEEEG
T ss_pred cccCCCCeecCCceEEEE--CCcccccccC--------ccccCCCCCCCCCcEE-----------------eeCCEEEcH
Confidence 588998876543332222 3889999887 6888998885433222 122356777
Q ss_pred CCCCCCcccchhhcccCCCCCCccc
Q 001136 1102 DCEQKGAARFHWLYHKCGFCGSYNT 1126 (1143)
Q Consensus 1102 dC~~~s~~~~h~l~~kC~~C~syNt 1126 (1143)
.|-. ..++.+|+.|++-++
T Consensus 63 ~cy~------~~~~~~~~~~~~~~~ 81 (123)
T 2l3k_A 63 QDIY------EWTKINGGSGGSGGS 81 (123)
T ss_dssp GGHH------HHHHHHTCCCCCCSC
T ss_pred HHhH------HHhccccCCCCCCCc
Confidence 6653 234667777765544
No 169
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=25.57 E-value=35 Score=34.13 Aligned_cols=60 Identities=15% Similarity=0.417 Sum_probs=36.2
Q ss_pred CCCCCCcccCCCCCccccccccccccccCCcccChhhhcccCCCCCCccccceeeccccccccccCCCCCCCCCC-CCcc
Q 001136 881 YASYRDPEKQVFGCEHYKRNCKIRAACCGKLFTCRFCHDKASDHSMDRKATSEMMCMHCLKIQAIGPNCTTPSCN-GLSM 959 (1143)
Q Consensus 881 ~~~~~~~~~~~~gC~HY~r~c~l~~~cC~k~y~Cr~CHde~~~H~~~r~~~~~~~C~~C~~~q~~~~~C~~~~cc-~~~f 959 (1143)
..+|..|.+ =+|.++.+++.. -++|.= ..- ++++.....|++++|+ |.-|
T Consensus 82 Kk~~t~Pkk----~~~~~~~~~~~~---~~~~~~-----------------~~~-----~~~~~~~~~c~~~~cg~g~fm 132 (152)
T 3u5c_f 82 XXXXXXXXX----XXXXXXXXXXXV---LSYYKV-----------------DAE-----GKVTKLRRECSNPTCGAGVFL 132 (152)
T ss_dssp CCCCCCCSC----CCCCCCCCCCCC---CCCSEE-----------------CSS-----SCEECCSCBCCSTTSCSSSBE
T ss_pred ccccccccc----ccccccccccce---eeEEEE-----------------ccC-----CeEEECcCcCCCccCCCceEe
Confidence 357887755 368888888743 466622 110 2444445678877774 3355
Q ss_pred e----eEecccccc
Q 001136 960 A----KYYCNICKF 969 (1143)
Q Consensus 960 ~----~y~C~~C~~ 969 (1143)
| +|||.+|.+
T Consensus 133 a~h~~r~~cgkc~~ 146 (152)
T 3u5c_f 133 ANHKDRLYCGKCHS 146 (152)
T ss_dssp EECSSCEEESSSSS
T ss_pred cccCCCcccCCCce
Confidence 5 677777764
No 170
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.52 E-value=33 Score=29.92 Aligned_cols=40 Identities=20% Similarity=0.384 Sum_probs=29.1
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccch
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDM 1071 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~m 1071 (1143)
...|+.|...+. ...+ ..-|..||..|| +|-.|+++|...
T Consensus 15 ~~~C~~C~~~I~--~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIID--EQPL--IFKNDPYHPDHF--------NCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCC--SCCC--CCSSSCCCTTTS--------BCSSSCCBCCTT
T ss_pred CCCCccCCCEec--ceEE--EECcceeCCCCC--------EeCCCCCccCCC
Confidence 456999998866 2222 335889999886 799999988743
No 171
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=25.32 E-value=37 Score=31.57 Aligned_cols=31 Identities=35% Similarity=0.815 Sum_probs=25.0
Q ss_pred cCcceEEcCCCCCCCcccchhhcccCCCCC-------Cccc
Q 001136 1093 NQVQDILCNDCEQKGAARFHWLYHKCGFCG-------SYNT 1126 (1143)
Q Consensus 1093 ~~~~~i~CndC~~~s~~~~h~l~~kC~~C~-------syNt 1126 (1143)
..+..++|.-||.. .||+--..|+.|| +||=
T Consensus 12 ~~KtH~lCrRCG~~---sfH~qK~~CgkCGYpa~k~R~ynW 49 (97)
T 2zkr_2 12 RNKTHTLCRRCGSK---AYHLQKSTCGKCGYPAKRKRKYNW 49 (97)
T ss_dssp CCCCEECCTTTCSS---CEETTSCCBTTTCTTTSSCCCCSS
T ss_pred cCCCCCcCCCCCCc---cCcCccccCcccCCchHhccCcch
Confidence 34568999999985 4688888999999 7873
No 172
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.86 E-value=41 Score=29.64 Aligned_cols=42 Identities=33% Similarity=0.765 Sum_probs=23.8
Q ss_pred CCCCccccCCCCCccccccCCccccccccccccccccccc----CCCCcccccc
Q 001136 980 PFCNLCRVGGGLGVDFFHCMTCNCCLGLKLLNHKCLEKCL----ETNCPICCDF 1029 (1143)
Q Consensus 980 ~~CgiCr~g~~l~~~~~hC~~C~~C~~~~~~~H~C~e~~~----~~~CpIC~e~ 1029 (1143)
+.|.||+.-...| .-|.+|+..+- ..|+.++. ...||.|..+
T Consensus 16 ~~C~IC~~~i~~g---~~C~~C~h~fH-----~~Ci~kWl~~~~~~~CP~Cr~~ 61 (74)
T 2ct0_A 16 KICNICHSLLIQG---QSCETCGIRMH-----LPCVAKYFQSNAEPRCPHCNDY 61 (74)
T ss_dssp CBCSSSCCBCSSS---EECSSSCCEEC-----HHHHHHHSTTCSSCCCTTTCSC
T ss_pred CcCcchhhHcccC---CccCCCCchhh-----HHHHHHHHHhcCCCCCCCCcCc
Confidence 5688888765422 12334433221 22777654 3569999887
No 173
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.84 E-value=55 Score=29.58 Aligned_cols=19 Identities=16% Similarity=0.335 Sum_probs=14.2
Q ss_pred cCCCCcCCCccccchhhhh
Q 001136 1057 SHYTCPICSKSLGDMAIYF 1075 (1143)
Q Consensus 1057 ~~~~CPiCr~s~~~m~~~~ 1075 (1143)
..+.|++|.+.+.....+.
T Consensus 79 ~~~~C~~C~k~f~~~~~L~ 97 (115)
T 2dmi_A 79 KVLKCMYCGHSFESLQDLS 97 (115)
T ss_dssp SSCBCSSSCCBCSSHHHHH
T ss_pred cceECCCCCCccCCHHHHH
Confidence 4589999999887655443
No 174
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=24.76 E-value=22 Score=33.30 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=12.6
Q ss_pred ccccccccccCCCCcccc
Q 001136 1010 LNHKCLEKCLETNCPICC 1027 (1143)
Q Consensus 1010 ~~H~C~e~~~~~~CpIC~ 1027 (1143)
.+|......+.-.|||=.
T Consensus 53 ~SH~LKd~~G~V~CPvLR 70 (106)
T 3alr_A 53 TSHYLKNRDGDVMCPYLR 70 (106)
T ss_dssp TSBCSBCTTSCBCCTTGG
T ss_pred ccceeECCCCCCcCCCcc
Confidence 578777776777777643
No 175
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=24.22 E-value=27 Score=30.45 Aligned_cols=17 Identities=24% Similarity=0.589 Sum_probs=11.6
Q ss_pred CCCCcCCCccccchhhh
Q 001136 1058 HYTCPICSKSLGDMAIY 1074 (1143)
Q Consensus 1058 ~~~CPiCr~s~~~m~~~ 1074 (1143)
.+.|++|.+.+.....+
T Consensus 36 ~~~C~~C~~~f~~~~~l 52 (96)
T 2dmd_A 36 PYKCKTCDYAAADSSSL 52 (96)
T ss_dssp SEECSSSCCEESSHHHH
T ss_pred CEeCCCCCCccCCHHHH
Confidence 47788888877655443
No 176
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=24.22 E-value=36 Score=32.68 Aligned_cols=72 Identities=18% Similarity=0.329 Sum_probs=34.9
Q ss_pred ccccccCCccccccccc--ccccccccc-cCCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCcccc
Q 001136 993 VDFFHCMTCNCCLGLKL--LNHKCLEKC-LETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLG 1069 (1143)
Q Consensus 993 ~~~~hC~~C~~C~~~~~--~~H~C~e~~-~~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~ 1069 (1143)
+..|.|..|+.-.+... ..|.=+-.. ....|++|... |.....+. -|.. .---...+.|++|.+.+.
T Consensus 20 ek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~-F~~~~~L~-------~H~~--~H~~~k~~~C~~C~k~F~ 89 (133)
T 2lt7_A 20 RVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKV-FPLAEYRT-------KHEI--HHTGERRYQCLACGKSFI 89 (133)
T ss_dssp EEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCE-ESSHHHHH-------HHHH--HHHTCCCEEESSSCCEES
T ss_pred CcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCee-cccccchh-------hhcc--ccCCCccccCCCCCCCcC
Confidence 44566666665554432 444322111 12357777655 54433211 1110 000123578999998887
Q ss_pred chhhh
Q 001136 1070 DMAIY 1074 (1143)
Q Consensus 1070 ~m~~~ 1074 (1143)
....+
T Consensus 90 ~~~~L 94 (133)
T 2lt7_A 90 NYQFM 94 (133)
T ss_dssp SHHHH
T ss_pred CHHHH
Confidence 65544
No 177
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=24.11 E-value=22 Score=28.56 Aligned_cols=15 Identities=33% Similarity=0.713 Sum_probs=9.3
Q ss_pred ccCCCCcccCCCCCc
Q 001136 970 FDDERTVYHCPFCNL 984 (1143)
Q Consensus 970 ~d~~~~~yhC~~Cgi 984 (1143)
||.+++.+.|..||.
T Consensus 18 ~d~~~gelvC~~CG~ 32 (50)
T 1pft_A 18 YDPERGEIVCAKCGY 32 (50)
T ss_dssp EETTTTEEEESSSCC
T ss_pred EcCCCCeEECcccCC
Confidence 455566667777765
No 178
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.09 E-value=50 Score=29.30 Aligned_cols=44 Identities=18% Similarity=0.501 Sum_probs=26.6
Q ss_pred CCcccccccccCCcceEecCCCCccchhhHHHHh----cc-CCCCcCCCc
Q 001136 1022 NCPICCDFLFTSSETVRALPCGHYMHLACFQAYT----CS-HYTCPICSK 1066 (1143)
Q Consensus 1022 ~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl----~~-~~~CPiCr~ 1066 (1143)
.|.||... -....-+.--.|...||..|+++=+ .. .-.||.|..
T Consensus 28 ~C~vC~~~-~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGK-HEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCC-CCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCc-CCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 58888753 1122222223689999999998532 22 456888863
No 179
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=24.01 E-value=25 Score=33.31 Aligned_cols=26 Identities=31% Similarity=0.791 Sum_probs=21.7
Q ss_pred EEcCCCCCCCcccchhhcccCCC--CCCccc
Q 001136 1098 ILCNDCEQKGAARFHWLYHKCGF--CGSYNT 1126 (1143)
Q Consensus 1098 i~CndC~~~s~~~~h~l~~kC~~--C~syNt 1126 (1143)
-.|.+|+...+. |+.|.|++ ||+|+.
T Consensus 25 ~~C~~C~~~~~~---W~CL~CG~vgCgr~~~ 52 (109)
T 3c5k_A 25 QPCGDCGTIQEN---WVCLSCYQVYCGRYIN 52 (109)
T ss_dssp CCCTTTCCCSSE---EEETTTCCEEECTTTT
T ss_pred CcCccccCCCCe---eeeeecCccccCCCcC
Confidence 369999988775 89999988 999864
No 180
>2ajj_A NS5A, nonstructural protein 5A; IN-plane membrane anchor domain, amphipathic alpha-helix, membrane protein; NMR {Synthetic} PDB: 2ajm_A 2ajn_A 2ajo_A
Probab=23.74 E-value=82 Score=22.82 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=19.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHH
Q 001136 551 RPIDTIFKFHKAISKDLEYLDM 572 (1143)
Q Consensus 551 ~PiD~i~~~HkAiRkdL~~l~~ 572 (1143)
--+|.++.+||-|++-++.++-
T Consensus 4 YiLdLl~~lh~~~~~~ikk~~l 25 (28)
T 2ajj_A 4 YVLDLIYSLHKQINRGLKKIVL 25 (28)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhh
Confidence 3589999999999999998874
No 181
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=23.43 E-value=35 Score=28.17 Aligned_cols=11 Identities=27% Similarity=0.911 Sum_probs=6.7
Q ss_pred CCcccCCCCCc
Q 001136 974 RTVYHCPFCNL 984 (1143)
Q Consensus 974 ~~~yhC~~Cgi 984 (1143)
.+-|.|+.||.
T Consensus 33 P~dw~CP~Cg~ 43 (52)
T 1yk4_A 33 PDDWVCPLCGA 43 (52)
T ss_dssp CTTCBCTTTCC
T ss_pred CCCCcCCCCCC
Confidence 45566776664
No 182
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.37 E-value=20 Score=32.48 Aligned_cols=16 Identities=25% Similarity=0.737 Sum_probs=10.6
Q ss_pred CCcccCCCCCccccCC
Q 001136 974 RTVYHCPFCNLCRVGG 989 (1143)
Q Consensus 974 ~~~yhC~~CgiCr~g~ 989 (1143)
-+|+||..||-=-.|+
T Consensus 51 ~GIW~C~kCg~~~AGG 66 (83)
T 3j21_i 51 TGIWQCQKCGATFAGG 66 (83)
T ss_dssp TTEEEETTTCCEEECC
T ss_pred cCeEEcCCCCCEEeCC
Confidence 5677777777665554
No 183
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=23.30 E-value=38 Score=30.09 Aligned_cols=26 Identities=23% Similarity=0.737 Sum_probs=17.3
Q ss_pred CCCCccchhhHHHHhc----cC-CCCcCCCc
Q 001136 1041 PCGHYMHLACFQAYTC----SH-YTCPICSK 1066 (1143)
Q Consensus 1041 pCgH~fH~~Ci~~wl~----~~-~~CPiCr~ 1066 (1143)
.|.-.||..|+.+-+. .. -.||.|+.
T Consensus 46 ~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 46 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 4778889999876432 22 57888864
No 184
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.26 E-value=42 Score=29.39 Aligned_cols=39 Identities=26% Similarity=0.595 Sum_probs=28.7
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCcccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLG 1069 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~ 1069 (1143)
...|+.|...++.. ..+.. -|..||..|| +|-.|++.|.
T Consensus 15 ~~~C~~C~~~I~~~-~~v~a--~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHG-QSLLA--LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSS-CCEEE--TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCcCcCCeeCCC-eEEEE--CCcccccccC--------CcCcCCCCcC
Confidence 45699999886533 33444 4889999887 7889998886
No 185
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.24 E-value=41 Score=29.52 Aligned_cols=42 Identities=29% Similarity=0.706 Sum_probs=29.8
Q ss_pred cCCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccch
Q 001136 1019 LETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDM 1071 (1143)
Q Consensus 1019 ~~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~m 1071 (1143)
....|+.|...++.. +.+. .-|..||..|| +|-.|++.|...
T Consensus 14 ~~~~C~~C~~~I~~~-e~v~--a~~~~wH~~CF--------~C~~C~~~L~~~ 55 (82)
T 2co8_A 14 AGDLCALCGEHLYVL-ERLC--VNGHFFHRSCF--------RCHTCEATLWPG 55 (82)
T ss_dssp SSCBCSSSCCBCCTT-TBCC--BTTBCCBTTTC--------BCSSSCCBCCTT
T ss_pred CCCCCcccCCCcccc-eEEE--ECCCeeCCCcC--------EEcCCCCCcCCC
Confidence 346799999886533 2232 35889999986 788999888643
No 186
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.18 E-value=40 Score=30.02 Aligned_cols=41 Identities=17% Similarity=0.371 Sum_probs=29.8
Q ss_pred ccCCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccc
Q 001136 1018 CLETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGD 1070 (1143)
Q Consensus 1018 ~~~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~ 1070 (1143)
.....|+.|...+. ...+. .-|..||..|| +|-.|++.|.+
T Consensus 23 ~~~~~C~~C~~~I~--~~~v~--a~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 23 KRTPMCAHCNQVIR--GPFLV--ALGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp TCCCBBSSSCCBCC--SCEEE--ETTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCCCccCCCEec--ceEEE--ECCccccccCC--------ccCCCCCCCCC
Confidence 34467999998863 23333 45899999887 78999998864
No 187
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.93 E-value=43 Score=28.07 Aligned_cols=38 Identities=26% Similarity=0.587 Sum_probs=27.9
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCcccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLG 1069 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~ 1069 (1143)
...|+.|...+.. ..+.. -|..||..|| +|-.|+++|.
T Consensus 5 ~~~C~~C~~~I~~--~~~~a--~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS--GGITY--QDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT--TCEEE--TTEEECTTTT--------BCTTTCCBCT
T ss_pred cCCCcccCCEeCc--ceEEE--CccccccCcC--------EECCCCCCCC
Confidence 3568999888653 33333 4889999887 7889998885
No 188
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=22.77 E-value=40 Score=28.37 Aligned_cols=45 Identities=22% Similarity=0.583 Sum_probs=29.8
Q ss_pred ccCCCCcccccccccCCcceEecCCCCccchhhHHHHh----ccCCCCcCCCc
Q 001136 1018 CLETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYT----CSHYTCPICSK 1066 (1143)
Q Consensus 1018 ~~~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl----~~~~~CPiCr~ 1066 (1143)
.....|.||... +.-+.--.|.-.||..|+..=+ ...-.||.|.+
T Consensus 9 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 345678888763 2322333688999999998743 23567888864
No 189
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=22.54 E-value=23 Score=37.05 Aligned_cols=45 Identities=20% Similarity=0.523 Sum_probs=29.5
Q ss_pred cCCCCcccccccccCCcceEecCCCCccchhhHHHHhc----cCCCCcCCCcc
Q 001136 1019 LETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTC----SHYTCPICSKS 1067 (1143)
Q Consensus 1019 ~~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~----~~~~CPiCr~s 1067 (1143)
.+..|.+|... +.-+..-.|.-.||..|+.+-+. ....||.|+..
T Consensus 6 ~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 6 NEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 34568888743 22222235889999999977542 34779999754
No 190
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=22.20 E-value=18 Score=31.37 Aligned_cols=46 Identities=22% Similarity=0.608 Sum_probs=30.0
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHh---ccCCCCcCCCcc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYT---CSHYTCPICSKS 1067 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl---~~~~~CPiCr~s 1067 (1143)
...| ||... +.+..-+.--.|.--||..|+.--. ...+.||.|+.+
T Consensus 19 ~~~C-iC~~~-~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~s 67 (68)
T 3o70_A 19 LVTC-FCMKP-FAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDS 67 (68)
T ss_dssp CCCS-TTCCC-CTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHTC
T ss_pred ceEe-ECCCc-CCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCCC
Confidence 3457 88765 3333344445699999999986432 246889988653
No 191
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=22.19 E-value=26 Score=40.30 Aligned_cols=35 Identities=26% Similarity=0.537 Sum_probs=23.2
Q ss_pred cccccccccccCCcccChhhhcccCCCCCCccccceeecccccccc
Q 001136 898 KRNCKIRAACCGKLFTCRFCHDKASDHSMDRKATSEMMCMHCLKIQ 943 (1143)
Q Consensus 898 ~r~c~l~~~cC~k~y~Cr~CHde~~~H~~~r~~~~~~~C~~C~~~q 943 (1143)
+|+....|-+||+. +....||+-+ ..+|..|....
T Consensus 46 ~~~~e~~C~~CG~~-------~~~~~HPl~~----v~lC~~Ck~~y 80 (386)
T 2pv0_B 46 QRNIEDICICCGSL-------QVHTQHPLFE----GGICAPCKDKF 80 (386)
T ss_dssp CCCGGGSBTTTCCS-------CCCSBCSSBS----SBCCHHHHHHH
T ss_pred cCcccceeCCCCCc-------CccccCCCcC----cchhhHHHHHH
Confidence 34455788888874 4456788753 67788776543
No 192
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=21.77 E-value=37 Score=41.65 Aligned_cols=83 Identities=19% Similarity=0.472 Sum_probs=27.3
Q ss_pred Eeccccc--cccCCCCcccCCCCCccccCCCCCccccccC--Ccccccccc--------cccccccccc--cCCCCcccc
Q 001136 962 YYCNICK--FFDDERTVYHCPFCNLCRVGGGLGVDFFHCM--TCNCCLGLK--------LLNHKCLEKC--LETNCPICC 1027 (1143)
Q Consensus 962 y~C~~C~--~~d~~~~~yhC~~CgiCr~g~~l~~~~~hC~--~C~~C~~~~--------~~~H~C~e~~--~~~~CpIC~ 1027 (1143)
-||+.|. +|.--|.=|.|..||++--.. |. .-..|.... ...|.-+... .-..|.+|.
T Consensus 49 ~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~--------C~~~v~~~c~~~~~~~~~~~~~~~h~~~~~~~~~~~~C~~C~ 120 (674)
T 3pfq_A 49 TFCSHCTDFIWGFGKQGFQCQVCSFVVHKR--------CHEFVTFSCPGADKGPASDDPRSKHKFKIHTYSSPTFCDHCG 120 (674)
T ss_dssp -------------------------------------------------------------CCCCCEECCSSCCCCSSSC
T ss_pred CccccccccccccCCceeECCCCCCCcChh--------hcCcCcccCCCcccccccccccCCcceeecCCCCCCCCCccc
Confidence 3566665 455447778888888622111 10 011221111 1245555432 345799997
Q ss_pred cccccC-CcceEecCCCCccchhhHH
Q 001136 1028 DFLFTS-SETVRALPCGHYMHLACFQ 1052 (1143)
Q Consensus 1028 e~lf~s-~~~v~~lpCgH~fH~~Ci~ 1052 (1143)
..++.- ....+.-.|+-.+|..|..
T Consensus 121 ~~l~g~~~qg~~C~~C~~~~H~~C~~ 146 (674)
T 3pfq_A 121 SLLYGLIHQGMKCDTCMMNVHKRCVM 146 (674)
T ss_dssp SCCBBSSSCEECCSSSCCCBCSSTTS
T ss_pred cccchhhcCccccccCCcchhhhhhh
Confidence 765432 2455666799999999973
No 193
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=21.67 E-value=38 Score=26.36 Aligned_cols=16 Identities=19% Similarity=0.528 Sum_probs=10.8
Q ss_pred CCCcCCCccccchhhh
Q 001136 1059 YTCPICSKSLGDMAIY 1074 (1143)
Q Consensus 1059 ~~CPiCr~s~~~m~~~ 1074 (1143)
+.|++|.+.+.....+
T Consensus 2 ~~C~~C~~~f~~~~~l 17 (57)
T 1bbo_A 2 YICEECGIRXKKPSML 17 (57)
T ss_dssp CBCTTTCCBCSSHHHH
T ss_pred CcCCCCcCcCCCHHHH
Confidence 5788888877655443
No 194
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=21.65 E-value=30 Score=35.35 Aligned_cols=44 Identities=23% Similarity=0.573 Sum_probs=29.9
Q ss_pred CCCCcccccccccCCcceEecCCCCccchhhHHHHhc----cCCCCcCCCcc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTC----SHYTCPICSKS 1067 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~----~~~~CPiCr~s 1067 (1143)
+..|.||.+. +.-+..-.|.-.||..|+.+-+. ....||.|+..
T Consensus 4 ~~~C~~C~~~----g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 4 EDWCAVCQNG----GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp CSSCTTTCCC----SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCccccCCCC----CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 4568888743 33333335889999999876543 34779999754
No 195
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=21.63 E-value=22 Score=31.74 Aligned_cols=12 Identities=42% Similarity=1.348 Sum_probs=10.3
Q ss_pred ceeEeccccccc
Q 001136 959 MAKYYCNICKFF 970 (1143)
Q Consensus 959 f~~y~C~~C~~~ 970 (1143)
|.+|||+.|+.|
T Consensus 1 mPkYyCdYCd~~ 12 (77)
T 3cw1_L 1 MPKFYCDYCDTY 12 (77)
T ss_pred CCCcccccCCce
Confidence 568999999987
No 196
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=21.28 E-value=49 Score=35.36 Aligned_cols=26 Identities=23% Similarity=0.737 Sum_probs=15.1
Q ss_pred CCCCccchhhHHHHh----cc-CCCCcCCCc
Q 001136 1041 PCGHYMHLACFQAYT----CS-HYTCPICSK 1066 (1143)
Q Consensus 1041 pCgH~fH~~Ci~~wl----~~-~~~CPiCr~ 1066 (1143)
.|.-.||..|+.+=+ .. .-.||.|..
T Consensus 194 ~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 194 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 477888888887532 12 346888864
No 197
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=21.05 E-value=40 Score=29.22 Aligned_cols=17 Identities=24% Similarity=0.712 Sum_probs=12.5
Q ss_pred CCCCcCCCccccchhhh
Q 001136 1058 HYTCPICSKSLGDMAIY 1074 (1143)
Q Consensus 1058 ~~~CPiCr~s~~~m~~~ 1074 (1143)
.+.|++|.+.+.....+
T Consensus 35 ~~~C~~C~~~f~~~~~l 51 (95)
T 2yt9_A 35 PYSCPVCGLRFKRKDRM 51 (95)
T ss_dssp SEECSSSCCEESCHHHH
T ss_pred CCcCCCCCCccCCHHHH
Confidence 47899998888765544
No 198
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.83 E-value=42 Score=29.11 Aligned_cols=39 Identities=21% Similarity=0.433 Sum_probs=27.7
Q ss_pred CCCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccch
Q 001136 1021 TNCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDM 1071 (1143)
Q Consensus 1021 ~~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~m 1071 (1143)
..|+.|...+. ...+ ..-|..||..|+ +|-.|++.|.+.
T Consensus 16 ~~C~~C~~~I~--~~~~--~a~~~~~H~~CF--------~C~~C~~~L~~g 54 (81)
T 1x6a_A 16 EFCHGCSLLMT--GPFM--VAGEFKYHPECF--------ACMSCKVIIEDG 54 (81)
T ss_dssp CBCTTTCCBCC--SCCB--CCTTCCBCTTSC--------BCTTTCCBCCTT
T ss_pred CcCccCCCCcC--ceEE--EECCceeccccC--------CccCCCCccCCC
Confidence 35888988865 2222 235889999887 788999988643
No 199
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=20.70 E-value=57 Score=28.29 Aligned_cols=26 Identities=23% Similarity=0.737 Sum_probs=16.1
Q ss_pred CCCCccchhhHHHHh----cc-CCCCcCCCc
Q 001136 1041 PCGHYMHLACFQAYT----CS-HYTCPICSK 1066 (1143)
Q Consensus 1041 pCgH~fH~~Ci~~wl----~~-~~~CPiCr~ 1066 (1143)
.|.-.||..|+++=+ .. .-.||.|..
T Consensus 38 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 38 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 377788888887422 12 446777753
No 200
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=20.54 E-value=41 Score=31.59 Aligned_cols=45 Identities=22% Similarity=0.505 Sum_probs=31.7
Q ss_pred CCccccceeeccccccccccCCCCCCCCCCCC---cceeEeccccccccCCC
Q 001136 926 MDRKATSEMMCMHCLKIQAIGPNCTTPSCNGL---SMAKYYCNICKFFDDER 974 (1143)
Q Consensus 926 ~~r~~~~~~~C~~C~~~q~~~~~C~~~~cc~~---~f~~y~C~~C~~~d~~~ 974 (1143)
..|..+..-+|..|+.-. .+..|+- | |. .-..|||..|.....|+
T Consensus 38 ~Vrp~~~VrICdeCs~G~-~~~rCIi--C-g~~~g~~dAYYC~eC~~lEKDR 85 (109)
T 2k0a_A 38 YVRPKRKVRVCENCSFGK-QAKNCII--C-NLNVGVNDAFYCWECCRLGKDK 85 (109)
T ss_dssp CCCCCEECEEEHHHHTSS-TTSBCTT--T-SSSBCCEECEECHHHHHHTSTT
T ss_pred ccCCcceEEECCcCCCCC-cCCceEE--c-CCCCCcccceehHhhhhhhccc
Confidence 345556677999998544 3568988 4 52 34579999999877664
No 201
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=20.38 E-value=39 Score=32.11 Aligned_cols=41 Identities=27% Similarity=0.491 Sum_probs=28.9
Q ss_pred CCcccccccccCCcceEecCCCCccchhhHHHHhccCCCCcCCCccccchh
Q 001136 1022 NCPICCDFLFTSSETVRALPCGHYMHLACFQAYTCSHYTCPICSKSLGDMA 1072 (1143)
Q Consensus 1022 ~CpIC~e~lf~s~~~v~~lpCgH~fH~~Ci~~wl~~~~~CPiCr~s~~~m~ 1072 (1143)
.|..|...+......+. .-|..||..|+ +|-.|++.+...+
T Consensus 68 ~C~~C~~~I~~~e~~~~--a~~~~~H~~CF--------~C~~C~~~L~~g~ 108 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMR--VKDKVYHLECF--------KCAACQKHFCVGD 108 (131)
T ss_dssp ECTTTCCEECTTSEEEE--ETTEEEEGGGC--------BCTTTCCBCCTTC
T ss_pred ChhhcCCccCccceeEe--eCCceECccCc--------ccCCCCCCCCCCC
Confidence 69999988644332222 35899999985 8999999885433
No 202
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=20.18 E-value=1e+02 Score=35.25 Aligned_cols=48 Identities=19% Similarity=0.532 Sum_probs=31.4
Q ss_pred CCCCcccccccccCCcceEecCCCCc--cchhhHHHHh--ccCCCCcCCCccccc
Q 001136 1020 ETNCPICCDFLFTSSETVRALPCGHY--MHLACFQAYT--CSHYTCPICSKSLGD 1070 (1143)
Q Consensus 1020 ~~~CpIC~e~lf~s~~~v~~lpCgH~--fH~~Ci~~wl--~~~~~CPiCr~s~~~ 1070 (1143)
.-.||+=...| ..+++...|.|. |-..=|..+. .....||+|.+.+.-
T Consensus 249 SL~CPlS~~ri---~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 249 SLQCPISYTRM---KYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp ESBCTTTSSBC---SSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred eecCCCccccc---cccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 34688877663 457788889976 3333333332 345889999998843
No 203
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=20.13 E-value=48 Score=29.24 Aligned_cols=30 Identities=27% Similarity=0.719 Sum_probs=16.6
Q ss_pred eeEecccccccc---CCCCcccCCCCCccccCC
Q 001136 960 AKYYCNICKFFD---DERTVYHCPFCNLCRVGG 989 (1143)
Q Consensus 960 ~~y~C~~C~~~d---~~~~~yhC~~CgiCr~g~ 989 (1143)
++|.|+-|.--. ..-+|+||..||-=-.|+
T Consensus 25 ~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AGG 57 (72)
T 3jyw_9 25 ARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGG 57 (72)
T ss_dssp SCBCCSSCCSSCBSBCSSSCBCCSSSCCCCCCS
T ss_pred cCccCCCCCCceeEecCCCeEECCCCCCEEeCC
Confidence 455555554221 125677777777665554
Done!