Query 001139
Match_columns 1143
No_of_seqs 319 out of 1478
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 16:52:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001139.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001139hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0892 Protein kinase ATM/Tel 100.0 6E-161 1E-165 1512.6 73.4 1053 5-1143 1697-2806(2806)
2 KOG0890 Protein kinase of the 100.0 9E-152 2E-156 1425.4 70.1 938 9-1143 1380-2382(2382)
3 KOG0891 DNA-dependent protein 100.0 2.5E-91 5.4E-96 909.1 49.4 996 11-1143 1221-2341(2341)
4 KOG0889 Histone acetyltransfer 100.0 4.6E-74 9.9E-79 739.4 59.5 965 11-1143 2414-3550(3550)
5 COG5032 TEL1 Phosphatidylinosi 100.0 2.1E-74 4.6E-79 773.5 56.8 989 4-1143 1010-2105(2105)
6 cd05171 PIKKc_ATM Ataxia telan 100.0 2.5E-70 5.5E-75 607.4 28.6 273 783-1059 1-278 (279)
7 cd05170 PIKKc_SMG1 Suppressor 100.0 1.3E-68 2.9E-73 600.1 28.1 276 783-1059 1-306 (307)
8 cd05163 TRRAP TRansformation/t 100.0 2.2E-68 4.7E-73 581.5 25.7 247 783-1059 1-252 (253)
9 cd05169 PIKKc_TOR TOR (Target 100.0 5.2E-68 1.1E-72 592.3 25.3 276 783-1060 1-280 (280)
10 cd05172 PIKKc_DNA-PK DNA-depen 100.0 3.3E-66 7.2E-71 558.3 25.1 233 783-1059 1-234 (235)
11 cd00892 PIKKc_ATR ATR (Ataxia 100.0 8.8E-65 1.9E-69 548.5 26.1 236 783-1059 1-236 (237)
12 cd05164 PIKKc Phosphoinositide 100.0 3E-61 6.6E-66 516.5 25.5 222 783-1053 1-222 (222)
13 cd00142 PI3Kc_like Phosphoinos 100.0 2.7E-56 5.9E-61 479.7 25.3 218 784-1053 2-219 (219)
14 cd00891 PI3Kc Phosphoinositide 100.0 5.3E-55 1.2E-59 494.2 31.8 250 763-1059 47-303 (352)
15 cd00896 PI3Kc_III Phosphoinosi 100.0 5.4E-55 1.2E-59 493.0 29.1 287 764-1143 52-350 (350)
16 cd05166 PI3Kc_II Phosphoinosit 100.0 2.7E-54 6E-59 487.0 31.1 248 764-1059 48-304 (353)
17 cd05165 PI3Kc_I Phosphoinositi 100.0 6.4E-53 1.4E-57 474.6 31.1 250 764-1059 53-316 (366)
18 cd05177 PI3Kc_C2_gamma Phospho 100.0 6.6E-53 1.4E-57 472.5 30.4 248 764-1059 49-305 (354)
19 cd05168 PI4Kc_III_beta Phospho 100.0 2E-53 4.4E-58 468.2 22.0 267 796-1141 15-287 (293)
20 smart00146 PI3Kc Phosphoinosit 100.0 5.6E-53 1.2E-57 448.7 21.8 198 813-1060 1-199 (202)
21 cd00894 PI3Kc_IB_gamma Phospho 100.0 1.7E-50 3.8E-55 453.1 30.9 249 763-1058 53-314 (365)
22 cd05176 PI3Kc_C2_alpha Phospho 100.0 4.4E-50 9.5E-55 447.1 31.9 286 723-1058 9-303 (353)
23 cd00893 PI4Kc_III Phosphoinosi 100.0 5.5E-51 1.2E-55 448.1 24.4 222 791-1059 9-238 (289)
24 cd05174 PI3Kc_IA_delta Phospho 100.0 1.2E-50 2.6E-55 453.7 27.4 249 765-1058 53-310 (361)
25 cd05173 PI3Kc_IA_beta Phosphoi 100.0 4.5E-50 9.7E-55 451.0 27.8 249 765-1059 53-311 (362)
26 PF00454 PI3_PI4_kinase: Phosp 100.0 3.1E-50 6.6E-55 441.0 19.0 229 811-1059 1-234 (235)
27 cd05167 PI4Kc_III_alpha Phosph 100.0 3.2E-49 7E-54 437.0 27.0 260 787-1129 15-294 (311)
28 cd00895 PI3Kc_C2_beta Phosphoi 100.0 2E-47 4.3E-52 425.9 31.1 247 764-1058 49-304 (354)
29 cd05175 PI3Kc_IA_alpha Phospho 100.0 1.4E-46 3.1E-51 419.2 28.5 248 764-1058 52-315 (366)
30 KOG0906 Phosphatidylinositol 3 100.0 1.2E-39 2.7E-44 368.1 27.5 421 575-1067 308-797 (843)
31 KOG0905 Phosphoinositide 3-kin 100.0 1.5E-39 3.3E-44 384.7 26.5 416 576-1060 858-1299(1639)
32 KOG0904 Phosphatidylinositol 3 100.0 2.8E-37 6.1E-42 359.0 26.8 418 575-1059 578-1027(1076)
33 PF02259 FAT: FAT domain; Int 100.0 1.3E-35 2.8E-40 345.3 30.5 317 189-601 1-352 (352)
34 KOG0902 Phosphatidylinositol 4 100.0 3.3E-30 7.2E-35 312.0 29.5 373 611-1064 1351-1756(1803)
35 KOG0903 Phosphatidylinositol 4 99.9 2.4E-27 5.2E-32 274.5 19.6 197 809-1052 585-786 (847)
36 PTZ00303 phosphatidylinositol 99.9 5E-26 1.1E-30 259.9 15.0 165 797-1019 1026-1201(1374)
37 PF02260 FATC: FATC domain; I 99.4 1.7E-14 3.7E-19 104.4 1.2 32 1112-1143 2-33 (33)
38 TIGR02917 PEP_TPR_lipo putativ 96.9 0.16 3.4E-06 66.3 26.1 60 362-429 839-898 (899)
39 KOG0892 Protein kinase ATM/Tel 96.5 3.7E-05 8E-10 102.5 -11.5 233 794-1060 2173-2415(2806)
40 TIGR02917 PEP_TPR_lipo putativ 96.3 5.9 0.00013 51.5 35.3 334 16-449 435-780 (899)
41 smart00145 PI3Ka Phosphoinosit 96.3 0.02 4.4E-07 60.0 9.6 98 575-678 43-155 (184)
42 cd00872 PI3Ka_I Phosphoinositi 96.0 0.019 4.1E-07 59.3 7.3 98 575-678 38-150 (171)
43 cd00870 PI3Ka_III Phosphoinosi 95.7 0.044 9.5E-07 56.5 8.9 102 575-676 45-162 (166)
44 cd00864 PI3Ka Phosphoinositide 95.6 0.061 1.3E-06 54.7 9.1 95 576-676 39-148 (152)
45 PRK15174 Vi polysaccharide exp 94.8 4.2 9.2E-05 51.7 24.6 67 359-433 283-349 (656)
46 PLN03218 maturation of RBCL 1; 94.2 7.5 0.00016 52.0 25.2 87 60-175 472-568 (1060)
47 cd00869 PI3Ka_II Phosphoinosit 94.1 0.17 3.6E-06 52.2 7.6 97 575-678 38-150 (169)
48 PF00613 PI3Ka: Phosphoinositi 93.9 0.097 2.1E-06 55.0 5.9 97 576-678 45-156 (184)
49 PRK15174 Vi polysaccharide exp 93.5 8.8 0.00019 48.9 23.5 326 14-433 44-383 (656)
50 PRK11447 cellulose synthase su 92.8 13 0.00027 50.9 24.8 114 18-175 275-411 (1157)
51 PRK10747 putative protoheme IX 92.4 15 0.00033 43.6 22.2 60 360-428 328-387 (398)
52 PLN03081 pentatricopeptide (PP 92.0 15 0.00032 47.2 22.9 339 13-432 190-558 (697)
53 PRK11447 cellulose synthase su 91.6 65 0.0014 44.1 29.3 65 360-432 637-701 (1157)
54 PRK11788 tetratricopeptide rep 91.3 35 0.00076 39.9 29.9 94 363-468 252-348 (389)
55 PLN03081 pentatricopeptide (PP 89.3 77 0.0017 40.7 27.9 55 60-114 158-218 (697)
56 PF13575 DUF4135: Domain of un 89.2 3.1 6.6E-05 49.1 12.0 111 807-994 68-178 (370)
57 PLN03218 maturation of RBCL 1; 89.2 33 0.00072 46.0 22.6 295 15-389 475-783 (1060)
58 cd00871 PI4Ka Phosphoinositide 88.4 1.4 3E-05 45.7 7.3 64 609-680 84-150 (175)
59 TIGR00990 3a0801s09 mitochondr 88.1 23 0.00049 44.8 19.6 52 371-430 519-570 (615)
60 PF12688 TPR_5: Tetratrico pep 86.1 2.6 5.6E-05 41.1 7.3 57 91-174 7-63 (120)
61 PF14559 TPR_19: Tetratricopep 85.5 1.4 3E-05 37.6 4.6 52 97-178 3-54 (68)
62 PLN03077 Protein ECB2; Provisi 83.0 1.7E+02 0.0037 38.6 24.8 26 13-38 355-380 (857)
63 PLN03077 Protein ECB2; Provisi 81.4 1.9E+02 0.0042 38.1 28.9 338 13-432 254-619 (857)
64 PF13414 TPR_11: TPR repeat; P 81.1 3.6 7.9E-05 35.1 5.6 54 89-172 7-61 (69)
65 PF13429 TPR_15: Tetratricopep 80.8 2.5 5.4E-05 47.5 5.6 57 61-117 111-178 (280)
66 PF13432 TPR_16: Tetratricopep 80.6 3.5 7.5E-05 34.9 5.2 54 91-174 3-56 (65)
67 TIGR00540 hemY_coli hemY prote 78.1 1.6E+02 0.0034 35.1 21.1 61 361-428 336-396 (409)
68 TIGR02906 spore_CotS spore coa 77.9 33 0.00071 38.9 13.8 29 961-991 186-214 (313)
69 PF13176 TPR_7: Tetratricopept 76.1 3.9 8.4E-05 30.5 3.6 26 89-114 3-28 (36)
70 PF13432 TPR_16: Tetratricopep 74.6 13 0.00028 31.2 7.1 60 366-433 3-62 (65)
71 cd05145 RIO1_like RIO kinase f 72.1 4.4 9.5E-05 42.7 4.2 25 967-993 142-166 (190)
72 PF14559 TPR_19: Tetratricopep 71.3 8.6 0.00019 32.6 5.2 56 371-434 2-57 (68)
73 PF13429 TPR_15: Tetratricopep 69.1 18 0.00038 40.6 8.6 110 16-169 150-268 (280)
74 TIGR02521 type_IV_pilW type IV 68.9 51 0.0011 34.4 11.8 84 16-113 35-127 (234)
75 TIGR02521 type_IV_pilW type IV 68.4 52 0.0011 34.4 11.7 113 16-172 69-192 (234)
76 PF13371 TPR_9: Tetratricopept 67.6 28 0.00061 29.8 7.8 60 368-435 3-62 (73)
77 cd05147 RIO1_euk RIO kinase fa 67.1 3.4 7.4E-05 43.7 2.1 25 967-993 142-166 (190)
78 KOG1129 TPR repeat-containing 67.0 17 0.00037 41.0 7.3 86 17-117 228-322 (478)
79 PRK10370 formate-dependent nit 67.0 63 0.0014 34.4 11.7 68 358-433 71-141 (198)
80 PF00515 TPR_1: Tetratricopept 66.8 8.6 0.00019 27.8 3.6 28 90-117 6-33 (34)
81 PRK15359 type III secretion sy 65.6 21 0.00046 35.8 7.4 81 62-172 26-115 (144)
82 KOG3365 NADH:ubiquinone oxidor 65.5 3.4 7.4E-05 40.2 1.5 37 1096-1142 93-129 (145)
83 TIGR03843 conserved hypothetic 64.3 5.3 0.00012 43.2 2.8 46 952-998 133-178 (253)
84 PF13371 TPR_9: Tetratricopept 64.0 16 0.00035 31.3 5.5 54 93-176 3-56 (73)
85 PF13414 TPR_11: TPR repeat; P 63.4 41 0.00088 28.5 7.9 63 360-430 3-66 (69)
86 PF04781 DUF627: Protein of un 63.3 29 0.00064 33.2 7.2 63 407-470 1-65 (111)
87 PLN03088 SGT1, suppressor of 63.3 33 0.00071 40.2 9.5 88 16-117 6-102 (356)
88 PF07719 TPR_2: Tetratricopept 62.7 11 0.00024 27.0 3.5 28 90-117 6-33 (34)
89 TIGR00990 3a0801s09 mitochondr 61.7 4.2E+02 0.0091 33.4 38.7 65 360-432 331-395 (615)
90 cd04792 LanM-like LanM-like pr 61.6 83 0.0018 41.3 13.9 108 807-994 111-218 (825)
91 KOG3087 Serine/threonine prote 60.0 49 0.0011 35.0 8.7 28 967-994 137-166 (229)
92 TIGR02795 tol_pal_ybgF tol-pal 59.2 99 0.0022 28.7 10.6 83 362-449 4-86 (119)
93 cd05151 ChoK Choline Kinase (C 57.4 8.1 0.00018 39.3 2.8 30 961-992 106-135 (170)
94 KOG0616 cAMP-dependent protein 57.4 4 8.6E-05 45.4 0.4 57 956-1017 153-217 (355)
95 PRK15179 Vi polysaccharide bio 56.7 55 0.0012 41.8 10.4 117 15-175 89-215 (694)
96 COG0661 AarF Predicted unusual 55.4 7.4 0.00016 47.7 2.4 49 821-880 206-256 (517)
97 PRK14879 serine/threonine prot 55.4 19 0.00041 38.2 5.4 25 966-992 118-142 (211)
98 TIGR02795 tol_pal_ybgF tol-pal 54.6 49 0.0011 30.9 7.6 59 90-175 7-65 (119)
99 PF13428 TPR_14: Tetratricopep 53.9 17 0.00038 28.2 3.5 28 90-117 6-33 (44)
100 PRK04750 ubiB putative ubiquin 52.0 8.5 0.00018 47.5 2.1 25 966-991 283-311 (537)
101 TIGR03724 arch_bud32 Kae1-asso 51.9 10 0.00023 39.8 2.6 24 966-991 113-136 (199)
102 TIGR02552 LcrH_SycD type III s 51.8 51 0.0011 31.9 7.4 89 15-117 20-117 (135)
103 PF13174 TPR_6: Tetratricopept 51.3 18 0.00039 25.6 3.0 28 90-117 5-32 (33)
104 COG5032 TEL1 Phosphatidylinosi 51.2 1.1E+03 0.023 34.9 25.2 56 62-117 1125-1182(2105)
105 PRK10359 lipopolysaccharide co 50.9 9.9 0.00022 41.5 2.2 23 967-991 159-181 (232)
106 PF13424 TPR_12: Tetratricopep 50.4 52 0.0011 28.6 6.5 71 358-429 3-73 (78)
107 PRK09782 bacteriophage N4 rece 49.9 1.1E+02 0.0025 40.8 12.1 86 15-117 545-641 (987)
108 PF13424 TPR_12: Tetratricopep 49.4 56 0.0012 28.4 6.5 27 88-114 8-34 (78)
109 PF12895 Apc3: Anaphase-promot 48.8 44 0.00095 29.8 5.8 74 26-111 3-84 (84)
110 TIGR01982 UbiB 2-polyprenylphe 48.2 22 0.00049 42.8 4.9 24 967-991 281-304 (437)
111 cd05144 RIO2_C RIO kinase fami 47.7 14 0.0003 39.1 2.7 30 965-995 147-176 (198)
112 PRK14574 hmsH outer membrane p 47.4 86 0.0019 41.0 10.2 118 19-180 41-167 (822)
113 PRK09782 bacteriophage N4 rece 46.8 1.7E+02 0.0037 39.2 12.9 113 15-173 512-633 (987)
114 cd05119 RIO RIO kinase family, 46.3 14 0.0003 38.4 2.4 26 966-993 138-163 (187)
115 PRK10747 putative protoheme IX 45.8 1E+02 0.0022 36.7 9.9 109 17-175 268-388 (398)
116 PF01636 APH: Phosphotransfera 45.6 15 0.00032 39.3 2.6 32 960-991 164-195 (239)
117 PF12895 Apc3: Anaphase-promot 44.9 29 0.00063 30.9 4.0 74 98-203 2-75 (84)
118 PF01163 RIO1: RIO1 family; I 43.6 13 0.00028 39.3 1.7 45 967-1018 131-175 (188)
119 KOG0608 Warts/lats-like serine 43.6 20 0.00043 43.9 3.3 39 954-993 740-778 (1034)
120 smart00090 RIO RIO-like kinase 43.4 17 0.00037 39.9 2.7 28 966-995 172-199 (237)
121 PF13181 TPR_8: Tetratricopept 43.2 38 0.00082 24.2 3.7 27 90-116 6-32 (34)
122 COG3642 Mn2+-dependent serine/ 43.0 18 0.00039 38.0 2.5 24 967-992 116-139 (204)
123 PRK15363 pathogenicity island 42.9 32 0.0007 35.1 4.3 46 92-167 76-121 (157)
124 KOG0594 Protein kinase PCTAIRE 42.6 13 0.00028 42.4 1.5 28 967-995 144-171 (323)
125 PF08424 NRDE-2: NRDE-2, neces 41.9 1.8E+02 0.0039 33.5 10.8 96 319-432 82-184 (321)
126 PRK10049 pgaA outer membrane p 41.8 9.2E+02 0.02 31.4 31.6 111 60-204 15-134 (765)
127 PF03704 BTAD: Bacterial trans 40.9 63 0.0014 32.1 6.2 54 88-171 65-118 (146)
128 TIGR02552 LcrH_SycD type III s 40.7 1.7E+02 0.0038 28.1 9.3 67 360-434 51-117 (135)
129 KOG1126 DNA-binding cell divis 40.1 8.6E+02 0.019 30.6 18.9 69 368-447 531-599 (638)
130 PLN03088 SGT1, suppressor of 39.6 64 0.0014 37.8 6.8 56 88-173 5-60 (356)
131 PF12688 TPR_5: Tetratrico pep 39.5 1.2E+02 0.0026 29.5 7.6 63 360-427 38-100 (120)
132 cd00189 TPR Tetratricopeptide 39.3 2E+02 0.0043 24.1 8.7 62 363-432 3-64 (100)
133 PRK11788 tetratricopeptide rep 38.4 6.8E+02 0.015 28.9 28.9 63 362-432 109-171 (389)
134 PRK12274 serine/threonine prot 37.6 23 0.00051 38.2 2.5 25 967-992 115-140 (218)
135 KOG1155 Anaphase-promoting com 37.6 1.8E+02 0.004 34.7 9.7 122 18-176 404-534 (559)
136 PRK01723 3-deoxy-D-manno-octul 37.1 23 0.0005 38.9 2.5 26 966-992 165-190 (239)
137 KOG1840 Kinesin light chain [C 36.9 8.9E+02 0.019 29.9 24.4 89 358-464 365-453 (508)
138 KOG0603 Ribosomal protein S6 k 36.7 21 0.00045 43.9 2.1 40 955-994 427-466 (612)
139 PF13428 TPR_14: Tetratricopep 36.3 74 0.0016 24.6 4.6 31 405-435 4-34 (44)
140 cd00189 TPR Tetratricopeptide 36.0 1.2E+02 0.0026 25.6 6.7 86 16-115 4-98 (100)
141 TIGR03302 OM_YfiO outer membra 35.7 2.6E+02 0.0056 30.0 10.5 81 361-446 34-114 (235)
142 PF06702 DUF1193: Protein of u 35.4 60 0.0013 35.0 5.0 92 952-1056 90-183 (221)
143 cd05156 ChoK_euk Choline Kinas 34.7 27 0.00058 39.6 2.6 32 960-991 177-211 (302)
144 PF13525 YfiO: Outer membrane 34.4 3.2E+02 0.007 28.9 10.7 80 363-447 8-87 (203)
145 PF00069 Pkinase: Protein kina 32.8 79 0.0017 34.2 5.9 48 966-1014 121-171 (260)
146 KOG2076 RNA polymerase III tra 32.8 5.7E+02 0.012 33.2 13.5 137 403-628 140-276 (895)
147 PRK12370 invasion protein regu 32.7 2.7E+02 0.0058 34.7 11.2 57 61-117 339-404 (553)
148 PF06176 WaaY: Lipopolysacchar 32.4 35 0.00076 37.1 2.8 22 967-990 159-180 (229)
149 KOG0598 Ribosomal protein S6 k 32.1 27 0.00059 40.1 2.0 34 958-992 136-173 (357)
150 KOG1006 Mitogen-activated prot 32.1 28 0.00061 38.5 2.0 59 967-1026 192-268 (361)
151 cd05120 APH_ChoK_like Aminogly 32.0 37 0.00081 32.9 2.8 25 967-992 113-137 (155)
152 PRK10049 pgaA outer membrane p 31.7 1.3E+03 0.028 30.1 26.9 88 16-117 53-148 (765)
153 PRK11189 lipoprotein NlpI; Pro 31.5 1.3E+02 0.0028 34.1 7.5 79 64-172 68-155 (296)
154 cd05154 ACAD10_11_like Acyl-Co 31.3 36 0.00077 36.1 2.7 32 960-991 172-204 (223)
155 PRK15180 Vi polysaccharide bio 31.2 90 0.002 37.1 5.9 111 59-202 286-407 (831)
156 PRK15359 type III secretion sy 30.7 3.3E+02 0.0072 27.1 9.5 68 359-434 57-124 (144)
157 PF14938 SNAP: Soluble NSF att 30.7 1.7E+02 0.0036 32.9 8.1 50 62-116 96-146 (282)
158 smart00028 TPR Tetratricopepti 29.7 63 0.0014 21.2 3.0 27 90-116 6-32 (34)
159 TIGR03504 FimV_Cterm FimV C-te 29.0 98 0.0021 24.5 4.0 39 405-444 2-40 (44)
160 PRK10866 outer membrane biogen 28.6 4.1E+02 0.0089 29.2 10.5 79 363-446 35-113 (243)
161 cd05804 StaR_like StaR_like; a 28.6 9.2E+02 0.02 27.5 24.0 65 366-430 270-335 (355)
162 PF09976 TPR_21: Tetratricopep 28.6 3.2E+02 0.007 27.0 9.0 62 362-428 50-111 (145)
163 PF02202 Tachykinin: Tachykini 28.4 26 0.00056 19.3 0.5 9 74-82 2-10 (11)
164 cd05157 ETNK_euk Ethanolamine 28.4 44 0.00096 36.1 2.9 32 961-992 169-200 (235)
165 cd02679 MIT_spastin MIT: domai 28.3 58 0.0013 29.3 3.0 25 90-114 13-37 (79)
166 KOG0592 3-phosphoinositide-dep 28.1 68 0.0015 38.9 4.4 34 957-991 184-221 (604)
167 PF13374 TPR_10: Tetratricopep 27.8 75 0.0016 23.5 3.3 28 88-115 5-32 (42)
168 PF01633 Choline_kinase: Choli 27.5 35 0.00077 36.4 1.9 30 962-991 143-172 (211)
169 cd05155 APH_ChoK_like_1 Unchar 27.5 45 0.00098 36.3 2.7 29 961-991 163-192 (235)
170 TIGR02172 Fb_sc_TIGR02172 Fibr 27.3 42 0.00091 36.5 2.4 25 965-991 156-180 (226)
171 PRK10370 formate-dependent nit 27.1 2.9E+02 0.0063 29.3 8.7 89 15-117 76-176 (198)
172 PF07721 TPR_4: Tetratricopept 26.3 1.1E+02 0.0023 20.9 3.4 22 405-426 4-25 (26)
173 PRK10803 tol-pal system protei 26.3 4.8E+02 0.01 29.2 10.6 81 362-447 144-225 (263)
174 PF09976 TPR_21: Tetratricopep 26.3 1.8E+02 0.0039 28.9 6.6 96 74-203 40-135 (145)
175 cd00180 PKc Catalytic domain o 25.7 4.6E+02 0.0099 26.4 10.0 30 964-993 113-142 (215)
176 PF01386 Ribosomal_L25p: Ribos 25.3 51 0.0011 30.2 2.2 16 973-988 73-88 (88)
177 TIGR00540 hemY_coli hemY prote 25.1 2.9E+02 0.0064 32.8 9.3 112 16-172 267-393 (409)
178 cd05122 PKc_STE Catalytic doma 24.6 2.5E+02 0.0054 29.7 8.0 53 964-1017 119-173 (253)
179 PRK12370 invasion protein regu 24.5 3.8E+02 0.0082 33.4 10.4 125 91-251 344-468 (553)
180 cd05153 HomoserineK_II Homoser 24.1 55 0.0012 36.9 2.7 29 962-991 175-203 (296)
181 PRK10271 thiK thiamine kinase; 24.0 60 0.0013 34.3 2.7 34 958-993 73-106 (188)
182 PRK09605 bifunctional UGMP fam 23.8 1E+02 0.0023 38.2 5.3 25 966-992 451-475 (535)
183 KOG0984 Mitogen-activated prot 23.7 51 0.0011 35.2 2.1 24 967-991 173-196 (282)
184 PRK11189 lipoprotein NlpI; Pro 23.4 3E+02 0.0064 31.2 8.5 87 17-117 69-164 (296)
185 PF13174 TPR_6: Tetratricopept 23.2 1.3E+02 0.0029 20.9 3.7 30 405-434 3-32 (33)
186 PF07804 HipA_C: HipA-like C-t 22.8 90 0.002 27.7 3.3 32 951-982 40-71 (79)
187 PRK05231 homoserine kinase; Pr 22.7 60 0.0013 37.1 2.7 26 964-991 189-215 (319)
188 cd06624 STKc_ASK Catalytic dom 22.3 1.6E+02 0.0035 32.1 6.0 28 966-993 131-158 (268)
189 cd05627 STKc_NDR2 Catalytic do 22.3 50 0.0011 38.4 1.9 25 967-992 125-149 (360)
190 KOG1235 Predicted unusual prot 21.8 63 0.0014 39.8 2.7 25 967-991 325-352 (538)
191 KOG0198 MEKK and related serin 21.5 80 0.0017 36.2 3.3 29 967-995 141-169 (313)
192 PF04212 MIT: MIT (microtubule 20.9 1.2E+02 0.0026 26.1 3.6 26 88-113 8-33 (69)
193 PRK15180 Vi polysaccharide bio 20.8 1.7E+02 0.0038 34.8 5.7 58 57-114 320-386 (831)
194 PLN02236 choline kinase 20.8 73 0.0016 37.1 2.9 32 961-992 199-230 (344)
195 COG2334 Putative homoserine ki 20.7 66 0.0014 37.2 2.5 25 967-991 202-226 (331)
196 KOG0612 Rho-associated, coiled 20.6 98 0.0021 41.0 4.0 87 967-1054 199-323 (1317)
197 PRK05943 50S ribosomal protein 20.6 55 0.0012 30.4 1.5 16 974-989 77-92 (94)
198 PF13041 PPR_2: PPR repeat fam 20.4 1.7E+02 0.0038 23.0 4.2 27 88-114 6-32 (50)
199 KOG1854 Mitochondrial inner me 20.3 2.3E+02 0.005 35.1 6.8 88 357-455 533-634 (657)
200 PRK02603 photosystem I assembl 20.1 4.3E+02 0.0093 27.0 8.3 92 15-117 38-152 (172)
201 PF04184 ST7: ST7 protein; In 20.1 1.8E+02 0.0039 35.2 5.8 61 403-464 260-321 (539)
No 1
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=6.1e-161 Score=1512.60 Aligned_cols=1053 Identities=43% Similarity=0.672 Sum_probs=866.5
Q ss_pred cccccccccCHHHHHHHHHHhchhHHHhhhhhhhhhhhhcc------c---------cCCCCC-CCcCCCcchHHHHHHH
Q 001139 5 WDKVYWLSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKS------L---------TLGSPD-FSHLETLPRHIEILVS 68 (1143)
Q Consensus 5 ~~~~~wL~Id~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~------~---------~~~~~~-~~~~~~~~~~~e~L~~ 68 (1143)
-+-.||+++++..+++.+++|+++..+..|.|....+...- . ....+. .++.+.....+++|.+
T Consensus 1697 ~~~~~~m~~ni~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~e~s~~~~t~~~~k~k~~e~~~~~lqDil~~ 1776 (2806)
T KOG0892|consen 1697 SNSIFKMDMNILKYLRRQLGCHAFNPFEIYYWLPIVYSVAASTAYDCLLFEYSLLSLTIHSPKNKRDELDITLLQDILKK 1776 (2806)
T ss_pred hhHHHHHHHHHHHHHHHhhchhhhcchhhhccccHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHH
Confidence 45578999999999999999999999999999876543100 0 001111 1111222345667777
Q ss_pred HHhhCCChhhHhhcccccchh-hHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhh
Q 001139 69 AVTQINEPDSLYGIIQSHKLS-SQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMM 147 (1143)
Q Consensus 69 iY~~L~epD~~~Gi~~~~~l~-~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (1143)
+|..|++||+.||+.....++ .+++.|||+++|.+|+..||.+-.- |
T Consensus 1777 ~y~~I~~pD~lyG~~~~~~~~~~~l~~~~he~~w~~aL~~~d~~~~~-~------------------------------- 1824 (2806)
T KOG0892|consen 1777 AYESINCPDALYGIKRPTSLKNLILITAEHEKNWPRALSYYDLADMY-P------------------------------- 1824 (2806)
T ss_pred HHhhCCCcchhcccCCcccccccccchhhhhhhHHHHHHhhcchhhc-c-------------------------------
Confidence 799999999999998877776 6899999999999999999887411 1
Q ss_pred hcchhhhHHHHHHhhchhhHHHHHHhhhccccCCCCCCcchhHHHHHHHHcCCCCCCCcccCCCCCCCCCCCccchhhhh
Q 001139 148 QRKPYKGLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHEN 227 (1143)
Q Consensus 148 ~~~~~~gllrcL~~LG~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~eaAWrl~~Wd~~~~~~~~~~~~~~~~~~~~f~~~ 227 (1143)
......|..++|++.|+.+++..|++|+.... ....+...+..|++|||+|+||...+... + .....+..++..
T Consensus 1825 ss~~~~~~~~sLq~~g~~~I~~~y~~Gl~~~~--~~~~~~~~e~~Ye~awr~g~Wd~~t~~~~-~---~~~~~~~~y~e~ 1898 (2806)
T KOG0892|consen 1825 SSEDEAGFINSLQNAGFFHILEFYIDGLKSND--KIDEPSNEELVYEAAWRLGKWDILTLSLV-D---QNKTKGDYYHES 1898 (2806)
T ss_pred chHhHhHHHHHHHHhcchhHHHHHhcChhhhh--hhhhhhhhhhhHHHHHhcCCcccCCcchh-h---hhhhhchhHHHH
Confidence 12345899999999999999999999998765 34556777889999999999998544221 1 244567788999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcccccccccccc
Q 001139 228 LHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIV 307 (1143)
Q Consensus 228 l~~~L~al~~~d~~~~~~~l~~aR~~l~~~Ls~~~~ES~~~~y~~l~~Lq~L~ELee~~~~~~~~~~~~~~~~~~~~~~~ 307 (1143)
+|.+++|+++++++.+...++.+|...+..+...+.|+....|+.+.+||.+.+||.+.++.+.+.
T Consensus 1899 ~f~~l~al~ere~e~~yl~le~a~~~~v~~i~~~see~~~~~y~~l~~L~~l~~l~~i~~l~~~~~-------------- 1964 (2806)
T KOG0892|consen 1899 LFEALRALHEREIEGSYLHLEDARNKKVLLINPNSEESSLSFYATLYDLQFLVTLEPIRCLQSTAD-------------- 1964 (2806)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhhhHhhhhhhc--------------
Confidence 999999999999999999999999999999999999999999999999999999999998765221
Q ss_pred CCCCcccchhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhcchh--------H----HHHHHHHHHHHHHccCC
Q 001139 308 SEPVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKD--------F----TMQHLLESASTLRKGFR 375 (1143)
Q Consensus 308 ~~~~~~~~~~~~~l~~~W~~rl~~~~~~~~~~E~iL~~R~~ll~~l~~~~--------~----~~~~wl~~a~laRk~g~ 375 (1143)
+......+...|+.-++.....++..+-....+.+++.....+. . ..-+-+....++|+...
T Consensus 1965 ------~~~~~~~~~~k~~t~~q~~~~~~~~~~~~~~d~n~l~s~~~l~~~l~~~~~~~~~~~l~~~g~e~~~la~~~~~ 2038 (2806)
T KOG0892|consen 1965 ------KHQSNTDILQKWKTNLQLSSQLMECLSLLIEDRNVLLSLLQLHKQLSESQLADLASLLKYYGLELCKLAESFLI 2038 (2806)
T ss_pred ------chhhhhHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhc
Confidence 11123446677888887766666666655555555554332221 0 11122222344444333
Q ss_pred hHHHHH---HHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHH-------------HHhccC-CCch
Q 001139 376 LSQAAA---ALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYI-------------SENYES-NEEA 438 (1143)
Q Consensus 376 ~~~A~~---aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l-------------~~~~~~-~~~~ 438 (1143)
.+.-.+ ++..++.- . .-...++.|+..|+++....+-..|-.. ..+... ....
T Consensus 2039 ~~~~~~~~r~~~~i~~~------~----~~~~~~s~aq~~~k~~~~~~~e~iL~~~~~kne~~~~~s~~~~~~~~lk~~~ 2108 (2806)
T KOG0892|consen 2039 ADLLQNIARAFPVIMLS------I----KLLCKFSLAQENLKHDIDKLSEAILWQRDEKNEAIISLSESLAKNNSLKEFP 2108 (2806)
T ss_pred hhhHHhHHHhhHHHHHH------H----HHHhhhhhhhhhccchhhhhHHHHHHHHHhhhhHHHHHHhhhhhcchhhhhH
Confidence 333322 21111100 0 0012355666666665544443333221 111111 2345
Q ss_pred hHHHHHhhhhHHhhhcCChHHHHHHhhhhhhhccccccccc-hhhHHHHhhHHhHHHhhHHHHHhhHHHHhhhHHHHHHH
Q 001139 439 PDVYRLVGKWLAESRSSNSRIILENYLKPAVSFSEDQRTTD-KKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAM 517 (1143)
Q Consensus 439 a~~~~llg~Wlaesr~e~~~~I~~~Y~~~a~~~~~~~~~~~-~~~~~~~~~~~~~lA~f~D~~~~~~~~~l~s~e~~~~~ 517 (1143)
.++++.+|+|++|++++++..|+++|+.+|+.+++...+.. +........+++++|+|.|.+|+..++++++.+|+.++
T Consensus 2109 ~~~~a~~g~Wlaetk~ens~~i~e~yl~~a~~~ae~~d~e~~~~~~~~~s~a~~~~akysd~~~~~~~~~~~sse~et~~ 2188 (2806)
T KOG0892|consen 2109 SDIYAVLGKWLAETKSENSALISEKYLEKAVSLAEHYDNESCKALIYCQSFAQFCLAKYSDPDYQEDEERRSSSEFETLK 2188 (2806)
T ss_pred HHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHhhhcchhHHHHHHhHHHHHHHHHHhccCchhhhHHHHHhHHHHhhHH
Confidence 78899999999999999999999999999999888663211 12223346889999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHhhhcccCccchhhHHHHHHHHHHhhcHHHHHHhHHhHHHHHHHHHHHHHHHhccCCCcchhhHH
Q 001139 518 RLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQELQKQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVF 597 (1143)
Q Consensus 518 ~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~l~k~~~~D~~e~~~l~~~~~~fl~~Al~~Yl~sL~~~~~~~~~~~~ 597 (1143)
+++++.++++..+.++.... .+.+..+.++++.+|+++++.+..+|++||..|++||++|+..|++||...++
T Consensus 2189 ~l~k~~~~~~~~~~er~~q~-------~~~~~~~~~rq~~lDe~~l~~l~~~r~~fL~~Alt~Yl~cl~~~~~~D~~~i~ 2261 (2806)
T KOG0892|consen 2189 DLQKLERSTVEASNEREEQM-------RKNHHVRVQRQLILDEEELLALSEDRSKFLTLALTNYLNCLSESDEYDVDLIF 2261 (2806)
T ss_pred HHHHHHHhhhhhhHHHHHHH-------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHhhcccccHHHHH
Confidence 99998888888765544221 11345678899999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCCcHHHHHHHHHhhcccCccchhHchHHHHhhhCCCccccccccHHHHHHHHHHHHHHhCChhhHHHHHhc
Q 001139 598 RLVSLWFSLSSRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLAL 677 (1143)
Q Consensus 598 RllsLWf~~~~~~~v~~~l~~~~~~ip~~k~l~~ipQL~srL~~~~~~~~~~~f~~~L~~ll~~i~~~hP~~~l~~l~~~ 677 (1143)
|+|+|||++++..++++.|.+.+.+||+|||+||++||+|||+. .+..+||..|..|+.+++.+||||++|+|+++
T Consensus 2262 R~cslWfsns~~~evn~~mk~~i~~ipsyKFip~~yQlAaRl~~----~~~~~fq~~L~~Li~r~~~dhPyhtly~L~~L 2337 (2806)
T KOG0892|consen 2262 RCCSLWFSNSHLKEVNNSLKHEIQTVPSYKFIPLVYQLAARLGN----SENNSFQKSLTSLIYRVGRDHPYHTLYQLLSL 2337 (2806)
T ss_pred HHhhhhccccchHHHHHHHHHHhccCCcchhHHHHHHHHHHhcc----ccCchHHHHHHHHHHHHhccCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999994 13567999999999999999999999999999
Q ss_pred ccccc-hhhhhccccchhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhcccccccc-cccchhhhh--
Q 001139 678 ANGDR-IKDKQRSRNSFVVDMDKKLAAENLLEELSSYHGAIIRQMKQMVDVYIKLAELETRREDTNKR-IQLPREIRC-- 753 (1143)
Q Consensus 678 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~-~~~~~~~~~-- 753 (1143)
.+... .++..+++.+ ++.+|..+++.++.......++++++++.+|++|+.+|+.++.+.++..+ +.+|.....
T Consensus 2338 ~~~~rd~e~~n~sr~s--l~~~rki~a~l~~~~v~~~~~~~v~~v~~lc~~yI~lAnl~~~q~~t~~k~v~~p~~~~~~K 2415 (2806)
T KOG0892|consen 2338 VNAVRDNEDENRSRGS--IDRDRKIAAELDLCDVNQGAGNMVRQLECLCEAYISLANLKTSQNDTTSKLVRLPGYQWFLK 2415 (2806)
T ss_pred HhcCcChhhhhhcccc--cchhHHHHHHHhhhHhhccchhHHHHHHHHHHHHHHHhcCcccccchhhhhhcCccccHHHh
Confidence 98876 4566677765 67889999999888888889999999999999999999987766666655 556655444
Q ss_pred hcccccccccccccCCCCCCCcCCCCcCccccccceEEEecCCCCceEEEEEcCCCCeeeEEeecCCcchhhhHHHHHHH
Q 001139 754 LRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFF 833 (1143)
Q Consensus 754 l~~l~~~p~~t~~lp~~~~~~~~~~~~~~i~~~~~~~~v~~s~~~Pk~i~~~gsdG~~y~~l~K~g~ddlR~D~r~~Ql~ 833 (1143)
..+++.+|+||+.+++++++. .+++|+|.+|.++|.+.+|.+.||+|+|.||||++|+.|+|+|+||||||++|+|+|
T Consensus 2416 ~~nl~~v~~pT~ev~v~~s~~--~~~~p~i~s~~~~v~~~~GinaPkiI~c~gSDG~~~kqLVK~gnDDLRQDAVMeQvF 2493 (2806)
T KOG0892|consen 2416 QLNLEGVPPPTMNVKVNDSGD--YGNIPTVVSFDDTVTFAGGINAPKVITCVGSDGKTYKQLVKGGNDDLRQDAVMEQVF 2493 (2806)
T ss_pred hhhccCCCCCCCCccccCCcc--cCCCceEEecccceeeecCccCCeEEEEEccCchhHHHHHhcccchHHHHHHHHHHH
Confidence 445567888888888887763 467999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccccccceeeeeceEEEcCCCCceeEecCCCcchHHHhhhhccCCCCCCCCCCCcchhHHHHhhccchH-
Q 001139 834 GLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVK- 912 (1143)
Q Consensus 834 ~~~N~ll~~~~et~~r~L~i~~y~Vipls~~~gliE~v~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 912 (1143)
+++|++|.++++|++|+|.||||+||||+|++|+||||.||+|++++|.... +|+|.||+|+||++.+||+.|.+.+
T Consensus 2494 ~~vN~lL~~~~et~krkL~irTYKVvPls~~sGvlEwv~~tiplgeyLv~~~--~gah~ry~p~d~s~~~crk~m~~~q~ 2571 (2806)
T KOG0892|consen 2494 GQVNTFLQNDRETRKRKLSIRTYKVIPLSPKAGVLEWVTNTIPLGEYLVVES--GGAHKRYRPNDWSLSKCRKLMSEVQK 2571 (2806)
T ss_pred HHHHHHhhccHHHHhcccceeEEeeeecCcccceeecccCCeehhhhhcccC--CccccccCCCCCChHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999997544 7999999999999999999998776
Q ss_pred ----hHHHHHHHHHHhhhhhHHHHHHHhcCCchHHHHHHHHHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeec
Q 001139 913 ----DKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDL 988 (1143)
Q Consensus 913 ----~k~~~f~~i~~~~~pvl~~~~~~~~~~~~~w~~~r~~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDf 988 (1143)
+|+++|.+||.++.||||+||++.||+|.+||++|++||||+|+.|||||||||||||..|||||..||+||||||
T Consensus 2572 k~~E~r~k~y~~vc~n~~PvfryFflEkF~dP~~WFekrlaYTrsvA~sS~VGyILGLGDRH~qNILid~~taEviHIDl 2651 (2806)
T KOG0892|consen 2572 KSLETRLKAYDKVCRNIRPVFRYFFLEKFPDPADWFEKRLAYTRSVAASSMVGYILGLGDRHGQNILIDQQTAEVIHIDL 2651 (2806)
T ss_pred ccHHHHHHHHHHHHhhchHHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHHHHhcccchhhhheeecccccceEEEee
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhccccCCCCCCCCCccccHHHHhhhcccccccchHHHHHHHHHHHhhChHHHHHHHHHHccCCccccccChhHHHhh
Q 001139 989 GVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQR 1068 (1143)
Q Consensus 989 g~~f~~~~~l~~pE~VPFRLT~~i~~~~g~~g~eG~F~~~~~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~w~~~~~~~~~~ 1068 (1143)
|++||+|+.+|+||+|||||||+||||||++||||+||+|||.||.+||++++.+++|||+|+||||++|.++|.|+..+
T Consensus 2652 GiAFEQGkilptPE~VPFRLTRDiVdgmGItGveGvFrRccE~t~~vlR~~~~~lltileVl~yDPLf~W~msplK~~~~ 2731 (2806)
T KOG0892|consen 2652 GIAFEQGKILPTPETVPFRLTRDIVDGMGITGVEGVFRRCCEFTLEVLRREKESLLTILEVLLYDPLFSWLMSPLKALKK 2731 (2806)
T ss_pred eeehhcCCcCCCCCcccceeehhhccccCccCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcchHHHhhcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccCCCCCcccccc-chhHHHHHHHHhhccCCCCCCCccCHHHHHHHHHHHccChhhhHhhCcccccCC
Q 001139 1069 QKEMDDDLETGLEGPEDEYEG-NKDAERALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL 1143 (1143)
Q Consensus 1069 ~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~v~~kl~g~~~~~~~sv~~~V~~LI~~Atd~~nL~~m~~gW~pwl 1143 (1143)
|++.+. .....++...+..+ +..|.|++.|+.+||.|++.|..+||++||++|||+||||+|||+|||||.||+
T Consensus 2732 q~~e~~-e~~n~~~~~~~~~~nd~~a~r~l~r~q~kl~g~e~g~~~sVe~qv~~LIqqA~dpsnLs~~fpGW~a~~ 2806 (2806)
T KOG0892|consen 2732 QKEEDE-ENFNLSGNITEDASNDRNAVRALMRAQRKLDGVEQGTMLSVEAQVQELIQQATDPSNLSLMFPGWSAFQ 2806 (2806)
T ss_pred HHhhcc-hhcccccchhhhhccchHHHHHHHHHHHHhhhhhccccccHHHHHHHHHHHhcCchhhhhhcCCCcCcC
Confidence 986322 12223332233333 578899999999999999999999999999999999999999999999999996
No 2
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=9.1e-152 Score=1425.36 Aligned_cols=938 Identities=29% Similarity=0.453 Sum_probs=763.6
Q ss_pred cccccCHHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhccc----
Q 001139 9 YWLSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQ---- 84 (1143)
Q Consensus 9 ~wL~Id~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~---- 84 (1143)
|..-||..+||.|..+|++|+||+||+|.+ +. . +. ..+...+.+.+|+.+|..|+||||+.|+.+
T Consensus 1380 fL~~iP~~tLa~aSfrc~~y~RalmylEs~----~~-----~-ek-~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a 1448 (2382)
T KOG0890|consen 1380 FLDLIPSDTLARASFRCKAYARALMYLESH----RS-----T-EK-EKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA 1448 (2382)
T ss_pred HHhhccHHHHHHHHHhhHHHHHHHHHHHHh----cc-----c-cc-hhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc
Confidence 555788999999999999999999999985 10 0 11 012223455566779999999999999976
Q ss_pred ccchhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhch
Q 001139 85 SHKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGC 164 (1143)
Q Consensus 85 ~~~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~ 164 (1143)
.+++..+|..+|..|+|.+|..|||.+.+.+|+ +..++.|+++|+.++|+
T Consensus 1449 ~~sl~~qil~~e~~g~~~da~~Cye~~~q~~p~------------------------------~~~~~~g~l~sml~~~~ 1498 (2382)
T KOG0890|consen 1449 DPSLYQQILEHEASGNWADAAACYERLIQKDPD------------------------------KEKHHSGVLKSMLAIQH 1498 (2382)
T ss_pred CccHHHHHHHHHhhccHHHHHHHHHHhhcCCCc------------------------------cccchhhHHHhhhcccc
Confidence 368999999999999999999999999998776 24567899999999999
Q ss_pred hhHHHHHHhhhccccCCCCCCcchhHHHHHHHHcCCCCCCCcccCCCCCCCCCCCccchhhhh-HHHHHHHHhcCChHHH
Q 001139 165 MHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHEN-LHSCLTALREGDSEEF 243 (1143)
Q Consensus 165 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~eaAWrl~~Wd~~~~~~~~~~~~~~~~~~~~f~~~-l~~~L~al~~~d~~~~ 243 (1143)
..++-..++|+..... +.-.++..+..|||||+++||.+.++.. ......|.+. +++++.+..+.|.-.+
T Consensus 1499 l~t~i~~~dg~~~~~s--e~~~~~~s~~~eaaW~l~qwD~~e~~l~-------~~n~e~w~~~~~g~~ll~~~~kD~~~~ 1569 (2382)
T KOG0890|consen 1499 LSTEILHLDGLIINRS--EEVDELNSLGVEAAWRLSQWDLLESYLS-------DRNIEYWSVESIGKLLLRNKKKDEIAT 1569 (2382)
T ss_pred hhHHHhhhcchhhccC--HHHHHHHHHHHHHHhhhcchhhhhhhhh-------cccccchhHHHHHHHHHhhcccchhhH
Confidence 9998888888766543 2234677789999999999999987642 1345567666 8999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccccccccCCCCcccchhhhHHH
Q 001139 244 YRKLKHSKQELVLSVACASEE-STEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLN 322 (1143)
Q Consensus 244 ~~~l~~aR~~l~~~Ls~~~~E-S~~~~y~~l~~Lq~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 322 (1143)
.+.|+.+|+.+++++++++.| ||.++|+.+++||+++|++..++...+.+.+ +. +.. -.
T Consensus 1570 ~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~-------------~~--s~~-----~s 1629 (2382)
T KOG0890|consen 1570 LDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYD-------------ED--SAN-----NS 1629 (2382)
T ss_pred HHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcc-------------cc--ccc-----cc
Confidence 999999999999999999988 9999999999999999999999865443321 00 000 11
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhcc---hhHHHHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCc
Q 001139 323 TEWSSILKRTQLHMNLLEPFMAFRRVLLQILSC---KDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCST 399 (1143)
Q Consensus 323 ~~W~~rl~~~~~~~~~~E~iL~~R~~ll~~l~~---~~~~~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~ 399 (1143)
+.|..|++.+++.+...||||++||++++.... ++.++++|+++|++||++|++|.|++||..+.... .|
T Consensus 1630 d~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-------~~ 1702 (2382)
T KOG0890|consen 1630 DNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR-------LP 1702 (2382)
T ss_pred hhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-------cc
Confidence 689999999999999999999999999988543 67799999999999999999999999998875432 22
Q ss_pred hhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC---------C-----chhHHHHHhhhhHHhhhcCChHHHHHHhh
Q 001139 400 VYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESN---------E-----EAPDVYRLVGKWLAESRSSNSRIILENYL 465 (1143)
Q Consensus 400 ~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~---------~-----~~a~~~~llg~Wlaesr~e~~~~I~~~Y~ 465 (1143)
...+|.||++|.+|+...|+..|+..+.++.+. . ...++..++++|+.|+....+.+|++.|.
T Consensus 1703 ---~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~ 1779 (2382)
T KOG0890|consen 1703 ---EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYH 1779 (2382)
T ss_pred ---hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 457999999999999999999999887554221 0 12457789999999999999999999886
Q ss_pred hhhhhccccccccchhhHHHHhhHHhHHHhhHHHHHhhHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHhhhcccCccchh
Q 001139 466 KPAVSFSEDQRTTDKKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDY 545 (1143)
Q Consensus 466 ~~a~~~~~~~~~~~~~~~~~~~~~~~~lA~f~D~~~~~~~~~l~s~e~~~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~ 545 (1143)
. |.... .++.+.||++|+|+|..+-.... . +.+++
T Consensus 1780 ~-~~ail-----------~ewe~~hy~l~~yy~kll~~~~~------------------------------~-~~E~~-- 1814 (2382)
T KOG0890|consen 1780 D-AKAIL-----------PEWEDKHYHLGKYYDKLLEDYKS------------------------------N-KMEKS-- 1814 (2382)
T ss_pred H-HHHHc-----------ccccCceeeHHHHHHHHhhhhhc------------------------------c-ccccc--
Confidence 6 65443 23567899999999998664310 0 00100
Q ss_pred hHHHHHHHHHHhhcHHHHHHhHHhHHHHHHHHHHHHHHHhccCCCcchhhHHHHHhhhccCCCc---------H------
Q 001139 546 SIKIQELQKQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSR---------Q------ 610 (1143)
Q Consensus 546 ~~~~~~l~k~~~~D~~e~~~l~~~~~~fl~~Al~~Yl~sL~~~~~~~~~~~~RllsLWf~~~~~---------~------ 610 (1143)
+....|+. +|.+|++++.+|+++.++++||++||||++|.. .
T Consensus 1815 ----------------------g~~~~~l~-~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek~~r~ei~s~~ 1871 (2382)
T KOG0890|consen 1815 ----------------------GRVLSLLK-AIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEKAPRGEIVSKN 1871 (2382)
T ss_pred ----------------------ccHHHHHH-HHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcccccCChhhhhhhh
Confidence 11234777 999999999999999999999999999997421 1
Q ss_pred --HHHHHHHHhhcccCccchhHchHHHHhhhCCCccccccccHHHHHHHHHHHHHHhCChhhHHHHHhcccccchhhhhc
Q 001139 611 --NVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALANGDRIKDKQR 688 (1143)
Q Consensus 611 --~v~~~l~~~~~~ip~~k~l~~ipQL~srL~~~~~~~~~~~f~~~L~~ll~~i~~~hP~~~l~~l~~~~~~~~~~~~~~ 688 (1143)
.++..+.+++..+|+|.|+++++||+|||||+++ .+..+|.++|.++..+||||++|++.++.+|...++.
T Consensus 1872 ~~~in~~i~~~~~~lp~Y~f~ta~sQLlSRicH~~~-----dV~~vl~~II~~l~~~YPqq~lW~~~a~~kS~~p~R~-- 1944 (2382)
T KOG0890|consen 1872 LKLINSLIEEALEHLPTYQFYTAYSQLLSRICHPNQ-----DVARVLKHIIAKLVLAYPQQTLWQSAALSKSNVPSRV-- 1944 (2382)
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHhCchHHHHHHHHHHhcccHHHH--
Confidence 2456677899999999999999999999999965 3557999999999999999999999999887654332
Q ss_pred cccchhhhhhHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhccc-----ccc
Q 001139 689 SRNSFVVDMDKKLAAENLLEELS---SYHGAIIRQMKQMVDVYIKLAELETRREDTNKRIQLPREIRCLRQL-----ELV 760 (1143)
Q Consensus 689 ~~~~~~~~~~~~~~~~~il~~l~---~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~l~~l-----~~~ 760 (1143)
...+.||.+.. .....++.+...+.+.+.++|+.++.. ..+..++...|+++-.. .++
T Consensus 1945 ------------~R~keIL~k~~~~~~~~~~l~~da~~lTe~L~~lcn~~v~~--ss~~~sl~t~F~kl~~~~~~s~ili 2010 (2382)
T KOG0890|consen 1945 ------------ERCKEILTKSRRQKPDYKKLLSDAYDLTEKLTNLCNKKVNS--SSKVLSLKTDFRKLVMNRRFSDILI 2010 (2382)
T ss_pred ------------HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhcCCCCc--ccccccHHHHHHHhccccChhhhhh
Confidence 23345665433 235567778888999999999865543 34455666666643221 134
Q ss_pred ccc---ccccCCCCCC-------CcCCCCcCccccccceEEEecCCCCceEEEEEcCCCCeeeEEeecCCcchhhhHHHH
Q 001139 761 PVV---TATVPIDCTC-------QYNEGSFPYFKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVME 830 (1143)
Q Consensus 761 p~~---t~~lp~~~~~-------~~~~~~~~~i~~~~~~~~v~~s~~~Pk~i~~~gsdG~~y~~l~K~g~ddlR~D~r~~ 830 (1143)
|+. ..++|.-++. ...++..|+|.+|.+.|+|++|+++||+|+++||||+.|.||||+ +||||+|.|+|
T Consensus 2011 P~~~~M~ptlP~~~~~~~~h~~~~~f~~~~~~IsgF~d~V~Il~SLqKPKkI~l~GsDGk~Y~~lCKp-KDDLRKD~RlM 2089 (2382)
T KOG0890|consen 2011 PLQSIMDPTLPLIDNNHATHSPFPPFQSHLPYISGFSDEVKILNSLQKPKKIKLRGSDGKIYPFLCKP-KDDLRKDARLM 2089 (2382)
T ss_pred hHhhhcccccccccCcccccCCCCCCCCcchhhhcchHHHHHHHhccCCeEEEEEcCCCCEeEEEeCc-hhhhhhhhHHH
Confidence 542 2334433321 111234568999999999999999999999999999999999996 79999999999
Q ss_pred HHHHHHHHHHhcCccccccceeeeeceEEEcCCCCceeEecCCCcchHHHhhhhccCCCCCCCCCCCcchhHHHHhhcc-
Q 001139 831 QFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMS- 909 (1143)
Q Consensus 831 Ql~~~~N~ll~~~~et~~r~L~i~~y~Vipls~~~gliE~v~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 909 (1143)
+|..+||.+|+||.++|||.|+||||.||||+++|||||||||+.++++|+.+.+...|. +.+ ..+++...-
T Consensus 2090 eFn~lin~lL~KD~eSRrR~L~IRTYaViPLneeCGiIEWv~nt~slR~IL~klY~~rg~---~~~----~~~l~~~~~~ 2162 (2382)
T KOG0890|consen 2090 EFNELINKLLRKDQESRRRKLYIRTYAVIPLNEECGIIEWVPNTASLREILDKLYMTRGK---WMI----KKQLRSVHLK 2162 (2382)
T ss_pred HHHHHHHHHHhhCHHHhhhcceeeEEEEeecCCccceEEecCCcchHHHHHHHHHHhccc---cch----hhHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999999887733332 111 112222111
Q ss_pred ---chHhHHHHHH-HHHHhhhhhHHHHHHHhcCCchHHHHHHHHHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEE
Q 001139 910 ---NVKDKRIAFQ-EVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVH 985 (1143)
Q Consensus 910 ---~~~~k~~~f~-~i~~~~~pvl~~~~~~~~~~~~~w~~~r~~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~h 985 (1143)
...+|.++|. .+++++||||++||+++||+|..||.+|.+|+||+||||||||||||||||++|||||..||++||
T Consensus 2163 ~~~~~~~~~~~F~~~~lpkfPPVFheWFl~~FPeP~sW~~SR~~Y~rTtAVMSmVGyIlGLGDRHgENILFDs~TGdcVH 2242 (2382)
T KOG0890|consen 2163 KQMAKEEKGKVFREKLLPKFPPVFHEWFLESFPEPGSWFASRNNYARTTAVMSMVGYILGLGDRHGENILFDSTTGDCVH 2242 (2382)
T ss_pred HhhcccchhhhhHHhhcccCCcHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhcCccccccceeeecCCCcEEE
Confidence 1235777886 579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecchhhccccCCCCCCCCCccccHHHHhhhcccccccchHHHHHHHHHHHhhChHHHHHHHHHHccCCccccccChhHH
Q 001139 986 IDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKA 1065 (1143)
Q Consensus 986 iDfg~~f~~~~~l~~pE~VPFRLT~~i~~~~g~~g~eG~F~~~~~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~w~~~~~~~ 1065 (1143)
+||.|.|++|..|++||.||||||+||+|||||+|+||.||++||.||++||+|++.+|++|+.|+||||+.|.......
T Consensus 2243 VDFnCLFnKGetlevPEiVPFRLT~NMidamGp~G~EG~Frk~cEiTLrLlR~n~e~LMSiL~tF~~DPlvew~~~~k~~ 2322 (2382)
T KOG0890|consen 2243 VDFNCLFNKGETLEVPELVPFRLTQNMIDAMGPLGLEGSFRKVCEITLRLLRKNRETLMSILETFVYDPLVEWNRPSKGR 2322 (2382)
T ss_pred EeecccccCCcccCCCCccceecchhHHhhcCCcccchhHHHHHHHHHHHHHhcchhHHHHHHHHHhCchhhccCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998532110
Q ss_pred HhhhhhcccccccCCCCCccccccchhHHHHHHHHhhccCCCC--CCCccCHHHHHHHHHHHccChhhhHhhCcccccCC
Q 001139 1066 LQRQKEMDDDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYE--GGEMRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL 1143 (1143)
Q Consensus 1066 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~kl~g~~--~~~~~sv~~~V~~LI~~Atd~~nL~~m~~gW~pwl 1143 (1143)
. ....|.+ .+++.+|++|+.|.. .|.++||||||+.||++|||++|||+||.||+|||
T Consensus 2323 s-------------------~~~i~e~-~~~i~~i~~rlqG~~~~~glPLSveGq~~~LI~eATseenL~~MYIGW~p~l 2382 (2382)
T KOG0890|consen 2323 S-------------------PKKINED-RLVIGRIRGRLQGAMKVDGLPLSVEGQASSLIEEATSEENLSEMYIGWMPFL 2382 (2382)
T ss_pred C-------------------cCcccch-HHHHhHHHHHHhccCcCCCCccchhhHHHHHHHHhcCHHHHHHHHhhhhccC
Confidence 0 0111222 678999999999954 57899999999999999999999999999999997
No 3
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=100.00 E-value=2.5e-91 Score=909.10 Aligned_cols=996 Identities=25% Similarity=0.391 Sum_probs=710.1
Q ss_pred cccCHHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc----c
Q 001139 11 LSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS----H 86 (1143)
Q Consensus 11 L~Id~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~----~ 86 (1143)
|+|+..+++..|..|++|++||+|.|+++... ...++++.|+.|.+.++.+|.+.|+..+ .
T Consensus 1221 lpi~~~~L~~~~~~c~a~~~~l~y~el~~~~~---------------~~~~~i~sl~~~~~~~q~~~~a~~i~~~a~~~~ 1285 (2341)
T KOG0891|consen 1221 LPIPIKTLGLYAEKCRAYAKALHYKELEFLKE---------------PSPDTIESLISINNKLQQREAAIGVLKYAQQHS 1285 (2341)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHhhhc---------------cchhHHHHHHhhcccchhHHHhccHHHHHHhHH
Confidence 66777799999999999999999999986432 2367899999999999999999999753 3
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhh
Q 001139 87 KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMH 166 (1143)
Q Consensus 87 ~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~ 166 (1143)
.+..+..|||+..+|++|+.+|+.......+ ..+...|.|+|+.++|.|+
T Consensus 1286 ~l~~~e~w~e~l~~~~d~l~a~~~~~~~~~~------------------------------~~e~~~g~~~~~~~lg~w~ 1335 (2341)
T KOG0891|consen 1286 ELQLKETWYEKLHRWEDALAAYELREKAGDS------------------------------SFELRMGKMRCLEALGDWD 1335 (2341)
T ss_pred HHHHhhhcccccccchhHhhhhhcccchhhh------------------------------hHHHHhhhhhhhhhhhhHH
Confidence 5678999999999999999999998654322 2355689999999999999
Q ss_pred HHHHHHhhhccccCCCCCCcchhHHHHHHHHcCCCCCCCcccCCCCCCCCCCCccchhhhhHHHHHHHHhcCChHHHHHH
Q 001139 167 VLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRK 246 (1143)
Q Consensus 167 ~l~~~~~~l~~~~~~~~~~~~~~~~~~eaAWrl~~Wd~~~~~~~~~~~~~~~~~~~~f~~~l~~~L~al~~~d~~~~~~~ 246 (1143)
-++..+...+...+ ...+..+++.+..+||.+++||.+.++ .+.++.++++. ..+++..++|++++..+...
T Consensus 1336 ~l~~~~~~~~~~~~-~~~~~~~ap~a~~~~~~~~~w~~~~~~--~s~~~~~~~~~-----~~~~a~~a~~~~~~~~~~~~ 1407 (2341)
T KOG0891|consen 1336 ELSQLASEKWEVAG-QEAKHKMAPLAAAAAWGLGQWDTMAEY--VSVMSEDSQDK-----AFFRAILALHRDEFEKAVKL 1407 (2341)
T ss_pred HHhhhhcccCCCcc-hhHHHHHHHHHHHhhhccccchhhhhh--cccccccchhh-----HHHHHHHhhhhhHHHHHHHh
Confidence 99855432222211 223457888999999999999997663 34555544444 45566889999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccccccccCCCCcccchhhhHHHHHHH
Q 001139 247 LKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWS 326 (1143)
Q Consensus 247 l~~aR~~l~~~Ls~~~~ES~~~~y~~l~~Lq~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~ 326 (1143)
+..+|+.++.+++++..|||+++|..+++.||+.|+|++++. +..+ +....+...|.
T Consensus 1408 ~~~~~dll~~e~~~~~~Es~sr~y~~~~~~~~~~e~E~~~~~--k~~~---------------------~r~~~i~~~~~ 1464 (2341)
T KOG0891|consen 1408 IERARDLLDTELTAMAGESYNRAYGVMVRAQMLAELEEIIEY--KKLP---------------------ERRPIIAKTWW 1464 (2341)
T ss_pred cccHHHHHHHHHHHHHhhHHhhchhhhhhhhhhhhHHHHHHh--hccc---------------------chhHHHHHHHH
Confidence 999999999999999999999999999999999999999883 2211 23345778999
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCC-CCCc-hhhhH
Q 001139 327 SILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGD-QCST-VYWLG 404 (1143)
Q Consensus 327 ~rl~~~~~~~~~~E~iL~~R~~ll~~l~~~~~~~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~-~~~~-~~~~~ 404 (1143)
+|+++++...+.|+.++.+|..++.+ ++ ...+|++++.+||++|+..++.+.+..+..-...... ...+ ..+..
T Consensus 1465 ~~l~~~q~~~~~wq~~lr~~~~v~~p---~~-~~~~~ik~a~~cr~s~~~~l~~~~l~~~L~~~~~~~~~~~~~~~~P~~ 1540 (2341)
T KOG0891|consen 1465 KRLQGCQKNVDDWQRILRVRSLVLSP---QE-DMEMWIKFASLCRKSGRLALARKLLNELLERDPSSDLPLPLKARLPQV 1540 (2341)
T ss_pred hhHHHhhccHHHHHHHHHHhhhccCC---Cc-chHHHHHHHHHhHHhHHHHHHHHHHHHHHhcCccccccccccccChHH
Confidence 99999999999999999999888766 43 4778999999999999999999998877532211110 1111 13445
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccC--C--C-----------------chhHHHHHhhhhHHhhhcCChHHHHHH
Q 001139 405 RLEEAKLLRAQGQHEMAINLAKYISENYES--N--E-----------------EAPDVYRLVGKWLAESRSSNSRIILEN 463 (1143)
Q Consensus 405 ~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~--~--~-----------------~~a~~~~llg~Wlaesr~e~~~~I~~~ 463 (1143)
.+...+.+|+.+....|++.+......... . . ..++++...|+|-..-. .+
T Consensus 1541 v~a~~~~~~~~~~~~~~~~~~~~~~s~l~~d~~~~~~~~~~~~~~~~~~~~~~l~a~~~l~~~~w~~~~~-~s------- 1612 (2341)
T KOG0891|consen 1541 VYAYLKYLWATDSKDEAINTLQEFTSTLNSDLGSDPDELLSEPTEAEKQEYTKLLARCFLKLGEWQQLLQ-DS------- 1612 (2341)
T ss_pred HHHHHhHHHhhccchHHHHHhHHHHHHHHhhcCCCchhhhhcccchhhhHHHHHHHHHHHhhcccccccc-CC-------
Confidence 688999999999999999988765433210 0 0 01222333333322100 00
Q ss_pred hhhhhhhccccccccchhhHHHHhhHHhHHHhhHHH-HHhhHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHhhhc-ccCc
Q 001139 464 YLKPAVSFSEDQRTTDKKSIERQCQTHFHLAHYADA-LFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSS-TKGE 541 (1143)
Q Consensus 464 Y~~~a~~~~~~~~~~~~~~~~~~~~~~~~lA~f~D~-~~~~~~~~l~s~e~~~~~~~~~~~~~el~~l~~~~~~~-~~~~ 541 (1143)
+ .++ ... .+-..|.+|.-.|. .|+.. ......+..++..++..++.- ..+.
T Consensus 1613 ~-~~~-------------~~~-~~L~~y~~at~~d~~~ykaw------------h~~a~a~f~~V~~l~~~~~~~~~~~~ 1665 (2341)
T KOG0891|consen 1613 W-RTS-------------ALD-GILQSYLLATQFDRGWYKAW------------HQWALANFEVVQMLKQVTKAKYAPGA 1665 (2341)
T ss_pred c-cch-------------HHH-HHHHHHHHhhhhhHHHHHHH------------HHHHHHHHHHHHhhhhhhccccCCcc
Confidence 0 000 000 00011222211111 11111 001111222222222211110 0000
Q ss_pred cchhhHHHHHHHHHHhhcHHHHHHhHHhHHHHHHHHHHHHHHHhccCCCcchhhHHHHHhhhccCCCcHHHHHHHHHhhc
Q 001139 542 KTDYSIKIQELQKQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMVDTID 621 (1143)
Q Consensus 542 ~~~~~~~~~~l~k~~~~D~~e~~~l~~~~~~fl~~Al~~Yl~sL~~~~~~~~~~~~RllsLWf~~~~~~~v~~~l~~~~~ 621 (1143)
..+- -...+..+ .|. .--..|+.+|+++|++++..+.....+++.|+++|||.+|++.+|...+.+.+.
T Consensus 1666 ~~~~--~~~~~~~~--~~~-------~~~~~~~v~avk~ff~~~~~~~~s~lqdtlrl~~L~f~~g~~~~v~q~i~~~~~ 1734 (2341)
T KOG0891|consen 1666 NIWN--MPDYLGSN--SDL-------MLIHHYAVPAVKGFFRSISLSPGSSLQDTLRLLTLWFDFGDNKDVYQALLEGIN 1734 (2341)
T ss_pred cccc--chhhccCc--CCc-------cchHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCCCchHHHHHHhhhh
Confidence 0000 00000000 111 112348999999999999999888788999999999999999999999999999
Q ss_pred ccCccchhHchHHHHhhhCCCccccccccHHHHHHHHHHHHHHhCChhhHHHHHhcccccchhhh---------hccccc
Q 001139 622 EVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALANGDRIKDK---------QRSRNS 692 (1143)
Q Consensus 622 ~ip~~k~l~~ipQL~srL~~~~~~~~~~~f~~~L~~ll~~i~~~hP~~~l~~l~~~~~~~~~~~~---------~~~~~~ 692 (1143)
.+|.+.|+..+|||++|+..+. ....+.+..++..+++.||++..|++.+...+....+. .+....
T Consensus 1735 ~~~i~~wl~~ipqLiari~~~~-----~~~~~l~~~ll~dig~~~pqA~iy~ltvas~s~~~~r~~~a~~ile~m~~~~~ 1809 (2341)
T KOG0891|consen 1735 LIPIDTWLEVIPQLIARIHTPD-----QLVVQLVLQLLSDIGRAHPQALVYPLTVASKSKSVARQKAALSILEKMREHSP 1809 (2341)
T ss_pred HhhHHHHHHhHHHHHHHHhccc-----hHHHHHHHHHHHHhhhcchhhhhHHHHHHHhcchHHHHHhHHHHHHHHHHhhH
Confidence 9999999999999999998763 34667899999999999999999999887665433221 111222
Q ss_pred hhhhhhHHHHHHHH-------------HHHHHh-hHHHHHHHHHHHHHHHHHHhhhhhcccc------------------
Q 001139 693 FVVDMDKKLAAENL-------------LEELSS-YHGAIIRQMKQMVDVYIKLAELETRRED------------------ 740 (1143)
Q Consensus 693 ~~~~~~~~~~~~~i-------------l~~l~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~------------------ 740 (1143)
.++..+....-+.| +++.+. +++ .++++.+++.+..+.++-.....
T Consensus 1810 ~Lv~~a~lvs~elir~a~lwhe~w~e~ldeAsr~yf~--~~nv~~m~~~l~p~~~~l~~~~~t~~e~sFqqt~g~dl~ea 1887 (2341)
T KOG0891|consen 1810 TLVRQARLVSEELIRVAILWHEQWHEGLEEASRLYFS--DHNVEGMFAVLRPLHEMLERGPQTLKEHSFQQTYGRDLKEA 1887 (2341)
T ss_pred hhhhhhhhhHHHHHHHHhhhHhhhhhccHHHHHHHhh--HhhHHHHHHHHhHHHHHhhcCCcchhhhhhHHhhChhhHHH
Confidence 22222222222221 111111 222 45666666666665543211110
Q ss_pred ---------------ccccc--------ccchhhhhhccccccccc-----ccccCCCCCCCcCCC-CcCccccccceEE
Q 001139 741 ---------------TNKRI--------QLPREIRCLRQLELVPVV-----TATVPIDCTCQYNEG-SFPYFKGLAESVM 791 (1143)
Q Consensus 741 ---------------~~~~~--------~~~~~~~~l~~l~~~p~~-----t~~lp~~~~~~~~~~-~~~~i~~~~~~~~ 791 (1143)
.++.| .+.+.+..++.++++.+. ...+++..++.|.++ .+..|.+|.+++.
T Consensus 1888 ~~~~~~~~~~~~~~dL~qawdly~~vf~ki~~ql~~l~sl~l~~vSp~L~~~~dlel~vPgty~~~~~~i~i~~f~~~~~ 1967 (2341)
T KOG0891|consen 1888 YEWVQKFEQSGDVKDLNQAWDIYYNVFKKIRKQLPQLTSLDLQYVSPKLLSAKDLELAVPGTYDPGKPIIRIQSFEPKFN 1967 (2341)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccccccccceeccCCccCCCceEEehhhccHHHH
Confidence 01111 112223334444443332 234555556677665 2457899999999
Q ss_pred EecCCCCceEEEEEcCCCCeeeEEeecCCcchhhhHHHHHHHHHHHHHHhcCccccccceeeeeceEEEcCCCCceeEec
Q 001139 792 VMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWV 871 (1143)
Q Consensus 792 v~~s~~~Pk~i~~~gsdG~~y~~l~K~g~ddlR~D~r~~Ql~~~~N~ll~~~~et~~r~L~i~~y~Vipls~~~gliE~v 871 (1143)
|+.|+++|+++.|+||||+.|.|++| |++|+|||+|+||+|++||.++..+.+|+||+|.|.+|.|+|++++.|+|+||
T Consensus 1968 vitskqRprkl~i~gs~g~d~~~~lk-ghed~rQD~RvmQLf~Lvn~ll~~d~~~~rr~L~iq~Y~~i~ls~~sgL~gWv 2046 (2341)
T KOG0891|consen 1968 VITSKQRPRKLVIRGSDGKDYQYLLK-GHEDLRQDERVMQLFGLVNTLLANDSETFRRNLTIQRYSVIPLSPDSGLIGWV 2046 (2341)
T ss_pred HHHHHhhhHHHhhcccchhhHHHHhh-chhhhhhHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhcCCCCCCceeeee
Confidence 99999999999999999999999999 78999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHhhhhccCCCCCCCCCCCcchhHHH---HhhccchHhHHHHHHHHHHhhhh-hHHHHHHHhcCCchHHHHHH
Q 001139 872 DGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKC---REHMSNVKDKRIAFQEVCENFRP-VLHYFFLERFLQPAYWFEKR 947 (1143)
Q Consensus 872 ~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~k~~~f~~i~~~~~p-vl~~~~~~~~~~~~~w~~~r 947 (1143)
|++.+++..+........ .....+++...+. .+.+. ..+|..+|+.-...... .+++-++-..++++.|+.+|
T Consensus 2047 ~~~dtlh~L~r~~r~~k~--i~l~~eh~~~~~~~l~~~~lt-l~qk~~vfe~~~~~t~G~dl~~~lwlkS~ssEaw~~rr 2123 (2341)
T KOG0891|consen 2047 PNCDTLHTLIREYREKKK--IPLNIEHRVMLQMAPDYDHLT-LMQKVEVFEYALSNTQGDDLYKVLWLKSPSSEAWLDRR 2123 (2341)
T ss_pred cccccHHHHHHHHHHhhc--cCCcchHHHHHhcCccccchh-hhhHHhHhHHHhhcCcHHHHHHHHHHhCCChhHHHHHh
Confidence 999999988754332211 1111112222111 11111 24678888877666655 55666667789999999999
Q ss_pred HHHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhccccC-CCCCCCCCccccHHHHhhhcccccccchH
Q 001139 948 LAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LKTPERVPFRLTRDIIDGMGVTGVEGVFR 1026 (1143)
Q Consensus 948 ~~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~~~~-l~~pE~VPFRLT~~i~~~~g~~g~eG~F~ 1026 (1143)
.+||+|.|+|||+|||+|+|||||+|+|+|+.||+++|||||.||+..+. .++||.+||||||+++++|.++|.+|.|+
T Consensus 2124 t~yt~S~A~msmvgyilGlGdrhpsNlmldr~tgkvihidfgdcfevA~~rek~pe~~pfRlTrmli~amev~gl~g~~~ 2203 (2341)
T KOG0891|consen 2124 TNYTRSLAVMSMVGYILGLGDRHPSNLMLDRLTGKVIHIDFGDCFEVAMLREKFPEKVPFRLTRMLINAMEVTGIEGTYR 2203 (2341)
T ss_pred hhhHHHHHHHHHHHHHhhccccchhhhhhhhcccceEEechHHHHHHHHhhccccccccHHHHHHHHHhHHHHhhhhHHH
Confidence 99999999999999999999999999999999999999999999999986 56999999999999999999999999999
Q ss_pred HHHHHHHHHHhhChHHHHHHHHHHccCCccccccChhHHHhhhhhcc-------------------cccccCCCCCcccc
Q 001139 1027 RCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMD-------------------DDLETGLEGPEDEY 1087 (1143)
Q Consensus 1027 ~~~~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~w~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~ 1087 (1143)
.+|+.+++++|.+++.+++++++|+|||+++|.........+..... .+............
T Consensus 2204 ~t~e~v~~~lr~~~~sl~a~leafvydplinwr~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~~~~~~~~~e 2283 (2341)
T KOG0891|consen 2204 ITCEHVMRVLRTNKESLMAVLEAFVYDPLINWRLDDVLSPGKDEEEVGEKDPLKNRKELGLPRAMAGEEIAVLESSVKPE 2283 (2341)
T ss_pred HHHHHHHHhhcCChHHHHHHHHhhhcccchhhhcccccchhhhhcccCCCCcccchhhhccHHhhhcccccccccccccc
Confidence 99999999999999999999999999999999986332221111000 00000000111112
Q ss_pred ccchhHHHHHHHHhhccCCCCC--CCccCHHHHHHHHHHHccChhhhHhhCcccccCC
Q 001139 1088 EGNKDAERALIRVKQKLDGYEG--GEMRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL 1143 (1143)
Q Consensus 1088 ~~~~~a~~~~~~v~~kl~g~~~--~~~~sv~~~V~~LI~~Atd~~nL~~m~~gW~pwl 1143 (1143)
..|..+.-++.|+..|+.|.+. ..+++|..||..||++||+|+|||+.|+||||++
T Consensus 2284 ~~n~~~~~vl~~~~~kltg~~~~~~~~l~v~~qv~~l~~qats~e~lc~~yigwcpfw 2341 (2341)
T KOG0891|consen 2284 ALNARAIQVLKRISDKLTGRDFVHEEPLDVPEQVEKLIQQATSPENLCQCYIGWCPFW 2341 (2341)
T ss_pred ccChhhHHHHHhcccccceeeccCcccCcHHHHHHHHHHhhcChHhhhcccccCCCCC
Confidence 2355567789999999999653 5679999999999999999999999999999953
No 4
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=4.6e-74 Score=739.45 Aligned_cols=965 Identities=17% Similarity=0.225 Sum_probs=689.4
Q ss_pred cccCHHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhccccc---c
Q 001139 11 LSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSH---K 87 (1143)
Q Consensus 11 L~Id~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~~---~ 87 (1143)
+++++.++..-+-.-++|++++.++|........ + .........++|.+||..|+|.|.+||+|+.+ .
T Consensus 2414 ~~lpp~Li~yl~kt~~~wh~~I~lLE~~~~~~~~-------~--~~~~~~~~~dsl~elY~~L~E~Dm~~Glwrrr~~~~ 2484 (3550)
T KOG0889|consen 2414 IELPPHLIKYLGKTYNLWHTSIRLLEDHQSNKEM-------E--NTKGDESCLDSLAELYRSLNEEDMFYGLWRRRAKFP 2484 (3550)
T ss_pred CCCCHHHHHHHhccchHHHHHHHHHHHHHHHHHh-------h--hhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhccH
Confidence 4688999999999999999999999987644300 0 01223567899999999999999999999875 3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhH
Q 001139 88 LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHV 167 (1143)
Q Consensus 88 l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~ 167 (1143)
-+.++..||+.|.|++|+..||.++.+... |+.+ +.+ .++.-| ...+++|.+.|.||++
T Consensus 2485 eT~~a~s~eQ~G~~e~AQ~lyekaq~Ka~~-------~~~~----------~~~--~Ey~lW--ed~WI~Ca~eL~QWdv 2543 (3550)
T KOG0889|consen 2485 ETMVALSYEQLGFWEEAQSLYEKAQVKARE-------GAIP----------YSE--SEYKLW--EDHWIRCASELQQWDV 2543 (3550)
T ss_pred HHHHHHHHHHhhhHHHHhhHHHHHHHHHhc-------ccCC----------CCc--HHHHHH--HHHHHHHHHHHHHHHH
Confidence 478999999999999999999999987665 1111 222 234444 5689999999999999
Q ss_pred HHHHHhhhccccCCCCCCcchhHHHHHHHHcCCCCCCCcccCCCCCCCCCCCccchhhhhHHHHHHHHhcCCh---HHHH
Q 001139 168 LDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDS---EEFY 244 (1143)
Q Consensus 168 l~~~~~~l~~~~~~~~~~~~~~~~~~eaAWrl~~Wd~~~~~~~~~~~~~~~~~~~~f~~~l~~~L~al~~~d~---~~~~ 244 (1143)
+-++++... -.++-.|||||+.+|+.+.++.-. ...+..+..+|...+|+++.++++.+. .++.
T Consensus 2544 l~e~~k~~~-----------~~~llle~aWrlsdw~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 2610 (3550)
T KOG0889|consen 2544 LTEFGKHEG-----------NYELLLECAWRLSDWNDQKDALEQ--KAKSLSDVPGFRKELYDAFLALQKKNSNGVGEFE 2610 (3550)
T ss_pred HHHHHhccC-----------CceeeeehhccCCcchhHHHHHHH--hhhccCCCCcHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 999985432 224568999999999998775421 234456778899999999999976544 5777
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccccccccCCCCcccchhhhHHHHH
Q 001139 245 RKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTE 324 (1143)
Q Consensus 245 ~~l~~aR~~l~~~Ls~~~~ES~~~~y~~l~~Lq~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 324 (1143)
..|..+-+..+.+|.+...-++..-++.+..+|++.|++|+.++.-.+.. ....++.....+++.+.++
T Consensus 2611 ~~i~e~~~l~i~~w~~lP~~v~~~h~~lL~~~QqivEl~Ea~~I~s~l~~-----------~n~~n~~~~~~d~Ksil~~ 2679 (3550)
T KOG0889|consen 2611 RLIGEAIQLAIREWRQLPERVNHGHVPLLQAFQQIVELQEAAQIYSDLND-----------GNVQNLDNKAQDIKSILQT 2679 (3550)
T ss_pred HHHHHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHHHHhccc-----------ccccccchhHHHHHHHHHH
Confidence 88888888888999988866666667888889999999999886533221 1111222234577889999
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHhhcc---------------------hhHHHHHHHHHHHHHHccCChHHHHHHH
Q 001139 325 WSSILKRTQLHMNLLEPFMAFRRVLLQILSC---------------------KDFTMQHLLESASTLRKGFRLSQAAAAL 383 (1143)
Q Consensus 325 W~~rl~~~~~~~~~~E~iL~~R~~ll~~l~~---------------------~~~~~~~wl~~a~laRk~g~~~~A~~aL 383 (1143)
|+.|++.+++|+++|+.+..||+.+++++.. -.+.+...+.+|+.|||.|-..+|.+.|
T Consensus 2680 Wr~RlP~~~Dd~~~Wsdl~~WRq~~y~~I~~~~~~~~~~~~~~~ns~~~~~Gyhe~A~~in~fakvArkh~l~~vcl~~L 2759 (3550)
T KOG0889|consen 2680 WRDRLPNVWDDMNQWSDLITWRQHAYSMINKAYLPLVPYKQNASNSNNLYRGYHELAWAINRFAKVARKHGLPDVCLNQL 2759 (3550)
T ss_pred HhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHhcccchhhhccCCcchHHHhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 9999999999999999999999999986420 0135677899999999999999999999
Q ss_pred HHHHhhcCCCCCCCCchhhhHH-HHHHHHHHHc-CChHHHHHHHHHHHHhccCCCchhHHHHHhhhhHHhhhcCChHHHH
Q 001139 384 HELKFLYTGPGDQCSTVYWLGR-LEEAKLLRAQ-GQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAESRSSNSRIIL 461 (1143)
Q Consensus 384 ~~l~~l~~~~~~~~~~~~~~~~-lE~Ak~lW~~-Ge~~~Ai~~Lk~l~~~~~~~~~~a~~~~llg~Wlaesr~e~~~~I~ 461 (1143)
..+.+++.-+.+ ..+.+ -|.|+.+-.. +|...+++.++......+.....|+.+.+-|.++++.+...+.+
T Consensus 2760 ~~iytlp~veiq-----daF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f~~kL~~~eeAn-- 2832 (3550)
T KOG0889|consen 2760 AKIYTLPNVEIQ-----DAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLKGMFLEKLGKFEEAN-- 2832 (3550)
T ss_pred HHHhccCcchHH-----HHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHHHHHhcCcchhH--
Confidence 998766432111 12222 3667766654 58899999999888877878889999999999999875444443
Q ss_pred HHhhhhhhhccccccccchhhHHHHhhHHhHHHhhHHHHHhhHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHhhhcccCc
Q 001139 462 ENYLKPAVSFSEDQRTTDKKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGE 541 (1143)
Q Consensus 462 ~~Y~~~a~~~~~~~~~~~~~~~~~~~~~~~~lA~f~D~~~~~~~~~l~s~e~~~~~~~~~~~~~el~~l~~~~~~~~~~~ 541 (1143)
+.+..|+++. ..+.+++..+|.|+|.+++.- +..
T Consensus 2833 -~~fs~AvQi~-----------~~l~KaW~~Wg~y~~~~f~~e---------------------------------~~n- 2866 (3550)
T KOG0889|consen 2833 -KAFSAAVQID-----------DGLGKAWAEWGKYLDNRFNKE---------------------------------PVN- 2866 (3550)
T ss_pred -HHHHHHHHHH-----------hhhHHHHHHHHHHHHHHHhcc---------------------------------Ccc-
Confidence 2334476654 346789999999999987641 000
Q ss_pred cchhhHHHHHHHHHHhhcHHHHHHhHHhHHHHHHHHHHHHHHHhccCCCcch-hhHHHHHhhhccCC--CcHHHHHHHHH
Q 001139 542 KTDYSIKIQELQKQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDV-RVVFRLVSLWFSLS--SRQNVIKNMVD 618 (1143)
Q Consensus 542 ~~~~~~~~~~l~k~~~~D~~e~~~l~~~~~~fl~~Al~~Yl~sL~~~~~~~~-~~~~RllsLWf~~~--~~~~v~~~l~~ 618 (1143)
..+...|+.||++++...+.+.. .-+-|+ ||+--- ....+.+++.+
T Consensus 2867 -----------------------------i~~a~~avsCyLqA~~~~~~skaRk~iakv--LwLls~dda~~~l~~~~~k 2915 (3550)
T KOG0889|consen 2867 -----------------------------ISFACNAVSCYLQAARLYNSSKARKLIAKV--LWLLSFDDSLGTLGDVFDK 2915 (3550)
T ss_pred -----------------------------cHHHHHHHHHHHHHhccccchhhHHHHHHH--HHHHHhccccchHHHHHHH
Confidence 13678999999999998876555 344555 676432 23467799999
Q ss_pred hhcccCccchhHchHHHHhhhCCCccccccccHHHHHHHHHHHHHHhCChhhHHHHHhcccccchhhhhc----------
Q 001139 619 TIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALANGDRIKDKQR---------- 688 (1143)
Q Consensus 619 ~~~~ip~~k~l~~ipQL~srL~~~~~~~~~~~f~~~L~~ll~~i~~~hP~~~l~~l~~~~~~~~~~~~~~---------- 688 (1143)
++..||.+.|++|+|||+..+.+... ..+..++.++|+.||||+.|++.+.+..-.+.++++
T Consensus 2916 ~l~~ip~~~wl~~IPQLl~sLs~~e~--------~~~~~iL~kia~~yPQal~f~lRta~~~~~i~qR~~~~~~~~~~~~ 2987 (3550)
T KOG0889|consen 2916 FLGEIPVWNWLYFIPQLLTSLSKKEA--------KLVRLILIKIAKSYPQALYFPLRTAREDLVIEQRQQVEVMGDKSDT 2987 (3550)
T ss_pred hhccCCchhhhhhhHHHHhhccccch--------hHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 99999999999999999999998632 567889999999999999999988654311111110
Q ss_pred ----cccchh-----------------hhh-----hHHHHHHHHHHHH----HhhHHHHHHHH------------HHHHH
Q 001139 689 ----SRNSFV-----------------VDM-----DKKLAAENLLEEL----SSYHGAIIRQM------------KQMVD 726 (1143)
Q Consensus 689 ----~~~~~~-----------------~~~-----~~~~~~~~il~~l----~~~~~~~~~~~------------~~~~~ 726 (1143)
.|.+.+ ++. -+..-++.+++.. +......+.++ -+++.
T Consensus 2988 ~~p~~r~~~i~~~~r~~~p~~~s~~~~ld~~~~~w~~~~~l~~il~~~~~~la~~~~~~~~~i~~~~~~~~~e~~~r~v~ 3067 (3550)
T KOG0889|consen 2988 TDPMGRPSKISQKQRNLHPILSSLEKILDSVQLVWERLFDLEEILKTAYQLLAKTLETLFDKIQARFKSTPEEHALRLVN 3067 (3550)
T ss_pred CCCCCcHHHHHHHhhccCcchhhHHhhhccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccHHHHHHHH
Confidence 000000 000 0000111111110 00000011110 11111
Q ss_pred HHHH-Hhhh-------hhcccc------------------------------cccc-----cccchhhhhhcc-------
Q 001139 727 VYIK-LAEL-------ETRRED------------------------------TNKR-----IQLPREIRCLRQ------- 756 (1143)
Q Consensus 727 ~~~~-la~~-------~~~~~~------------------------------~~~~-----~~~~~~~~~l~~------- 756 (1143)
++.. .... .++... ++.. ..++.-+.+++.
T Consensus 3068 al~~~~~~~~~~r~~ivt~~~~~~~~~~~~l~~~~~~vl~~~~~~~~k~dFi~~~~~~~~~~~l~~~i~klk~w~~~le~ 3147 (3550)
T KOG0889|consen 3068 ALLNIDGIQNGNRLGIVTKNTKSLSDTEMNLNRFASNVLPDPVRKKFKEDFITNKDGMKCICDLENYIDKLRKWRSRLES 3147 (3550)
T ss_pred HHHHHhhhccccccccccccccCCcchHHHHHHHHHHhcchHHHHHHHHHHHhcccCCcccccHHHHHHHHHHHHHHHHH
Confidence 1111 0000 000000 0000 001100000000
Q ss_pred -cccccc----------cc----cccCCCCCCCcC-----CCCcCccccccceEEEe-cCCCCceEEEEEcCCCCeeeEE
Q 001139 757 -LELVPV----------VT----ATVPIDCTCQYN-----EGSFPYFKGLAESVMVM-NGINAPKVVECFGSDGHKYRQL 815 (1143)
Q Consensus 757 -l~~~p~----------~t----~~lp~~~~~~~~-----~~~~~~i~~~~~~~~v~-~s~~~Pk~i~~~gsdG~~y~~l 815 (1143)
++-.|- .. ..--+.-+++|. ...++.|++|+|.|+++ ++..+-||++++|+||+.|.|.
T Consensus 3148 k~~~~pk~~~LE~~s~~L~~F~hq~~evEiPGqyl~~k~~~~~~v~I~RF~P~veiv~~~~~~~rRl~iRG~dGk~~~~~ 3227 (3550)
T KOG0889|consen 3148 KVDRFPKKLNLEEKSRFLSNFSHQFDEVEIPGQYLLDKSNNNYFVKIERFEPRVEIVRGHGMSYRRLYIRGSDGKIYPFA 3227 (3550)
T ss_pred HHhcccccccHHhhchHHhcccccCCcccCChHHhcccchhhhhhhHHHhccchhhhcccceeEEEEEEeccCCeeccee
Confidence 000110 00 000011112221 12468899999999877 7778999999999999999655
Q ss_pred ee-cCCcchhhhHHHHHHHHHHHHHHhcCccccccceeeeeceEEEcCCCCceeEecCCCcchHHHhhhhccCCCCCCCC
Q 001139 816 AK-SGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRY 894 (1143)
Q Consensus 816 ~K-~g~ddlR~D~r~~Ql~~~~N~ll~~~~et~~r~L~i~~y~Vipls~~~gliE~v~~~~~l~~il~~~~~~~~~~~~~ 894 (1143)
+. +|.-+.|.++||+|+++++|..|.+++||+||++.+.++.+||+|++++|+|.+|+..+|++|++.+....+ +
T Consensus 3228 ~~~~~~~~sRreErvlQL~r~lN~~l~~~~Et~rR~l~~~~p~~ipvs~q~rl~ed~ps~~tl~~I~~~~c~~~~----~ 3303 (3550)
T KOG0889|consen 3228 VQYPGLRNSRREERVLQLFRMLNESLGKNKETRRRHLEFKLPIVIPVSSQMRLVEDKPSSITLQEIYEEYCARNN----V 3303 (3550)
T ss_pred eecccCCCccHHHHHHHHHHHHHHHhccChhhhhhhcCccCceeeeccCceEEecCCcchhhHHHHHHHHHHhcC----C
Confidence 43 256889999999999999999999999999999999999999999999999999999999999976433222 1
Q ss_pred CCCcchhH-------HHHhhccc----hHhHHHHHHHHHHhhhh--hHHHHHHHhcCCchHHHHHHHHHHHhhhhHHHHH
Q 001139 895 GIGDWSFL-------KCREHMSN----VKDKRIAFQEVCENFRP--VLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVG 961 (1143)
Q Consensus 895 ~~~~~~~~-------~~~~~~~~----~~~k~~~f~~i~~~~~p--vl~~~~~~~~~~~~~w~~~r~~f~~S~A~~Si~~ 961 (1143)
.+ |.+.. +++..... ..-++.+|+++...+.| ++++||.++|+++.++|.+|++|+.++|+.++.+
T Consensus 3304 ~~-D~~i~~~~d~l~~~~~~~~~~~~~~~lr~~i~e~i~~~~vp~sil~dy~~~tf~~~~d~w~frk~f~~qla~~~~~~ 3382 (3550)
T KOG0889|consen 3304 SP-DDPILLYFDRLAQAYSVLIGLTAAHQLRGQIFEDIQKTMVPRSILKDYFYKTFTNYSDFWTFRKQFTDQLAVFSFME 3382 (3550)
T ss_pred Cc-chhhHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCChhhhhhhHhHHHHHHHHHHHHH
Confidence 12 22222 22222111 23568899999999999 9999999999999999999999999999999999
Q ss_pred HhhccCCCCCCceEEecCCCeEEEeecchhhcc-ccCCCCCCCCCccccHHHHhhhcccccccchHHHHHHHHHHHhhCh
Q 001139 962 YIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQ-GLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNK 1040 (1143)
Q Consensus 962 yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~-~~~l~~pE~VPFRLT~~i~~~~g~~g~eG~F~~~~~~~~~~Lr~~~ 1040 (1143)
|++.+|.|.|+.+++.++||.+..-||-+.... .+.+...|+|||||||||+.++|-.|+||.+...+.++.+||-++.
T Consensus 3383 ~~lni~~~~p~k~~~~~dsG~v~~~~~~~~~~~~~~~~~~~~~VpFRlTpni~~~i~~~~veg~l~~s~~a~ar~l~~p~ 3462 (3550)
T KOG0889|consen 3383 YMLNINGRGPAKLTFAKDSGKVFNTDFLPSYISSKPIFHNNEPVPFRLTPNIQEFIGDFGVEGLLAGSMMAIARCLIEPD 3462 (3550)
T ss_pred HHHhcCCCCccceeeeeccccccchhhccCcccCccccccCCcCCeeecCCchhhhcchhhhhhhHHHHHHHHHHHhCCc
Confidence 999999999999999999999999999999854 4568899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCccccccChhHHHhhhhhcccccccCCCCCccccccchhHHHHHHHHhhccCCC--CCCCccCHHHH
Q 001139 1041 EALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALIRVKQKLDGY--EGGEMRSVHGQ 1118 (1143)
Q Consensus 1041 ~~l~~~L~~f~~Dpl~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~kl~g~--~~~~~~sv~~~ 1118 (1143)
+.+-.++..|+||++.+|.....+.. ..++..+. .....+..|..|+... .+....+....
T Consensus 3463 ~~l~~~l~~~~RDE~~~w~~~~~~~~-------------~~~~~~~~----~v~~~v~~i~rrv~~~~~~~~ge~~~~~t 3525 (3550)
T KOG0889|consen 3463 FELDPYLQLFFRDEIISWFKQQTKGV-------------PADPLLEE----MVNSNVDLIMRRVASLSSENSGELPDNQT 3525 (3550)
T ss_pred cchhHHHHHHHHHHHHHHhhccccCC-------------cCChhhhh----hHHHHHHHHhhhhhhhccccccCCCCCcc
Confidence 99999999999999999984321100 00111111 1222344444444321 11112233338
Q ss_pred HHHHHHHccChhhhHhhCcccccCC
Q 001139 1119 VQQLIQDAIDPERFCLMFPGWGAWL 1143 (1143)
Q Consensus 1119 V~~LI~~Atd~~nL~~m~~gW~pwl 1143 (1143)
+..||++|+|++|||||+|.|+|||
T Consensus 3526 ~~~lis~A~s~~nLaqmDp~w~pWl 3550 (3550)
T KOG0889|consen 3526 VIDLISQATSPDNLAQMDPTWHPWL 3550 (3550)
T ss_pred HHHHHHHhcChhhhhcCCccccccC
Confidence 9999999999999999999999997
No 5
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=100.00 E-value=2.1e-74 Score=773.47 Aligned_cols=989 Identities=22% Similarity=0.254 Sum_probs=612.4
Q ss_pred ccccccccccCHHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcc
Q 001139 4 SWDKVYWLSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGII 83 (1143)
Q Consensus 4 ~~~~~~wL~Id~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~ 83 (1143)
.|...+|+.++...+.-.+-.|+.++++++|.|.+.-+. . ....++.++++..++.+.|..-|+.
T Consensus 1010 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~------~~~si~t~ls~~~~~~~~~~~~~~~ 1074 (2105)
T COG5032 1010 TEHQLKNLPLPSLSIGFYESLCSFLAKLLHDEELYFFPL---------L------FVSSLETLLSVNYHINQLDLRPNIL 1074 (2105)
T ss_pred hhhhhheecchhhhhhHHHHHHHHHHHHhHHHHHHhccc---------c------hHHHHHHHHhhhhhhhhhhhccCcc
Confidence 356678888888888899999999999999999854211 0 1246788999999999999999953
Q ss_pred cc----cchhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHH
Q 001139 84 QS----HKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSL 159 (1143)
Q Consensus 84 ~~----~~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL 159 (1143)
.. ...+....+++..++|.+++..|......... ......|.+++.
T Consensus 1075 ~~~~~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~~~~~------------------------------~~~~~~~~l~~~ 1124 (2105)
T COG5032 1075 KHFGSFVRFQLKPHLVKYLQRWYEALNRYFELLSKGDR------------------------------LFAISFTKLRNV 1124 (2105)
T ss_pred hhhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHhhccc------------------------------hhHHHHhhhhhh
Confidence 32 12344578999999999999999887664200 234457899999
Q ss_pred HhhchhhHHHHHHhhhccccCCCCCCcchhHHHHHHHHcCCCCCCCcccCCCCCCCCCCCccchhhhhHHHHHHHHhcCC
Q 001139 160 QQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGD 239 (1143)
Q Consensus 160 ~~LG~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~eaAWrl~~Wd~~~~~~~~~~~~~~~~~~~~f~~~l~~~L~al~~~d 239 (1143)
...|.|.......+.-. -.+.+..+.-...+.+-++|.+|.|+....+. +.+.........+.. ......+.++
T Consensus 1125 ~~~~~~~~~~~L~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~q~~~--e~~~~k~~~~~~~~s---~~~~~~~~~~ 1198 (2105)
T COG5032 1125 DALGKLELYSSLAEIDM-FLSLHRRRKLLETLVATAYEQVGEWYKAQQLY--EVAQRKARSKEFPFS---LQYLYWHIND 1198 (2105)
T ss_pred hHHHHHHHHHHHHHHhh-hhccCcchhhhhHHHHHHHHHHHhHHHHHHHH--HHHhhhcccccCchh---hHHHHHcccc
Confidence 99999988766554211 11112333334557788999999999743321 111111222322221 2456778888
Q ss_pred hHHHHHHH-HHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccccccccCCCCcccchh
Q 001139 240 SEEFYRKL-KHSKQELVLSVACA-SEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQ 317 (1143)
Q Consensus 240 ~~~~~~~l-~~aR~~l~~~Ls~~-~~ES~~~~y~~l~~Lq~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (1143)
.+.+.... -.++..++.++... ..+++.+++-...+.+...|+++++...++...+ . ....-
T Consensus 1199 ~~~a~~~~~~~~~~~~~~~~~~i~~~~~w~~a~~~~~~~~~~~~~~e~~~~~~~~~~~-------------~---~~~~~ 1262 (2105)
T COG5032 1199 IDCADKLQSVLAELSLVTGISELLLEESWRRALFSNIKDSLESELEEIIDGMYKSNED-------------F---GALML 1262 (2105)
T ss_pred hhhHhhhhhhhhhcccccchhhhccchhHHHHHhhhHHhhhhhhhhHHhhhhhhcccc-------------h---HHHHH
Confidence 88888887 56788888888888 6788999998889999999999998854433210 0 00001
Q ss_pred hhHHHHHHHHHHHh---hhhhhhhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHccC-ChHHHHHHHHHHHhhcC-C
Q 001139 318 LSWLNTEWSSILKR---TQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGF-RLSQAAAALHELKFLYT-G 392 (1143)
Q Consensus 318 ~~~l~~~W~~rl~~---~~~~~~~~E~iL~~R~~ll~~l~~~~~~~~~wl~~a~laRk~g-~~~~A~~aL~~l~~l~~-~ 392 (1143)
...+...|+.++.+ ++..+..+-.+.-.+..+.. .....++|++++..|+..+ +.......+..+..-.. .
T Consensus 1263 ~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 1338 (2105)
T COG5032 1263 LSLSAELWDKILEGRSSCSKSIKLSLNIWLDLSIVVS----PKDEPELFIKFVELCEASSIRSKLLEKNIQELLEKLEEI 1338 (2105)
T ss_pred HHHHHhccchhhcchhhhhHHHHHHHHHHHHHhhhcC----HhhhhhHHHHHHHHHhhhhHHHHhcchhHHHHHhccccc
Confidence 22345578888887 76666655544443322222 1223478999999999999 55555555555432110 0
Q ss_pred CC---C--CCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCCchhHHHHHhhhhHHhhhcCChHHHHHHhhhh
Q 001139 393 PG---D--QCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAESRSSNSRIILENYLKP 467 (1143)
Q Consensus 393 ~~---~--~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a~~~~llg~Wlaesr~e~~~~I~~~Y~~~ 467 (1143)
.. . ...|. ...+..-+..|+......+....+.+.......... ........-.+-..++....+ .++..
T Consensus 1339 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~ 1413 (2105)
T COG5032 1339 KSPLGTLRDRLPP--PWALLDLKRLLATWRQNAFLRINPELLPLLSSLLNL-QSSSLSKQLVSRGSSESAISI--NSFAS 1413 (2105)
T ss_pred cchhhhhhhcCCC--CchhhhhhhhhhHHHHhhhhhhchhhccccchhhhc-cchhccccccccchhhhhHHH--HHHHH
Confidence 00 0 00000 112334444555444444443333221110000000 000000000000001111111 11110
Q ss_pred hhhccccccccchhhHHHHhhHHhHHHhhHHHHHhhHHHHhh---------hHHHHHHHHHHhhhHHHHHHHHHHhhhcc
Q 001139 468 AVSFSEDQRTTDKKSIERQCQTHFHLAHYADALFKSYEERLA---------SNEWQAAMRLRKHKTIELEALIKRLKSST 538 (1143)
Q Consensus 468 a~~~~~~~~~~~~~~~~~~~~~~~~lA~f~D~~~~~~~~~l~---------s~e~~~~~~~~~~~~~el~~l~~~~~~~~ 538 (1143)
..... +. -|.+++... ++. ...|...... + + ++........ ..+
T Consensus 1414 ~~~~~------------------~~----~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~-~-~-~~~~~~~~~~-~~~ 1466 (2105)
T COG5032 1414 VARKH------------------FL----PDNQLKKIY-QLSNILISEAFLLLRYLLLCRL-G-R-RELKAGLNVW-NLT 1466 (2105)
T ss_pred HHHHh------------------cC----cHHHHHHHh-hhhhhhcchHHHHHHHHHHHHh-h-h-HHHHHHHHhh-ccc
Confidence 10000 00 000111100 000 0000000000 0 0 0111110000 000
Q ss_pred cCccchhhHHHHHHHHHHhhcHHHHH-HhHHhHHHHHHHHHHHHHHHhccCCCcchhhHHHHHhhhccCCCcHHHHHHHH
Q 001139 539 KGEKTDYSIKIQELQKQLAMDREEAQ-KLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMV 617 (1143)
Q Consensus 539 ~~~~~~~~~~~~~l~k~~~~D~~e~~-~l~~~~~~fl~~Al~~Yl~sL~~~~~~~~~~~~RllsLWf~~~~~~~v~~~l~ 617 (1143)
. ..+...+. ..+.. ........+...++...+.+......-+.+..+|.+.+|+..+....+.....
T Consensus 1467 ~---~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 1534 (2105)
T COG5032 1467 N---LELFSDIQ---------ESEFFEWGKNLKLLSIIPPIEEIFLSNALSCYLQVKDLLKKLNLFELLGSLLSAKDAAG 1534 (2105)
T ss_pred c---hhHHHHHH---------HHHHHHhhhhhHHhccCCchhHHHHhhhccchHHHHHHHHhhHHHHHhhhhhhHHHHHH
Confidence 0 00000000 01111 11223334455677777777777777677889999999999987666666666
Q ss_pred HhhcccCccc-hhHchHHHHhhhCCCccccccccHHHHHHHHHHHHHHhCChhhHHHHHhcccccchh---------hhh
Q 001139 618 DTIDEVQSYK-FIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALANGDRIK---------DKQ 687 (1143)
Q Consensus 618 ~~~~~ip~~k-~l~~ipQL~srL~~~~~~~~~~~f~~~L~~ll~~i~~~hP~~~l~~l~~~~~~~~~~---------~~~ 687 (1143)
.......... |++.+||+.+++..... .-...+..++..+++.||++..+++.+...+.... ...
T Consensus 1535 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~-----~~~~~~~~~l~~~~~~~~~a~~~~L~~~~~s~~~~~e~~~~~~~~~~ 1609 (2105)
T COG5032 1535 SYYKNFHIFDLEISVIPFIPQLLSSLSL-----LDLNSAQSLLSKIGKEHPQALVFTLRSAIESTALSKESVALSLENKS 1609 (2105)
T ss_pred hhhhhcccccccccccchhhhhhhhcch-----hHHHHHHHHHHhhhhhchhhhhhhhhHHHHHhhhhhHhHHHHHhhhh
Confidence 6666555555 77766666666654321 11245889999999999999999998654432111 111
Q ss_pred ccccchhhhhhHHHH------------------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhh---h----------
Q 001139 688 RSRNSFVVDMDKKLA------------------AENLLEELSSYHGAIIRQMKQMVDVYIKLAELE---T---------- 736 (1143)
Q Consensus 688 ~~~~~~~~~~~~~~~------------------~~~il~~l~~~~~~~~~~~~~~~~~~~~la~~~---~---------- 736 (1143)
+.+....+....... ...++.++...+.+ +.........+.... +
T Consensus 1610 ~~~~~~~v~~~~~~~~E~~~~~~~l~~~~~~~~l~q~~~r~~~~~~~----i~~~~~~~~~l~~~~~~~~~~~~~~s~~~ 1685 (2105)
T COG5032 1610 RTHDPSLVKEALELSDENIRIAYPLLHLLFEPILAQLLSRLSSENNK----ISVALLIDKPLHEERENFPSGLSLSSFQS 1685 (2105)
T ss_pred hcCChhhHhHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHhcccchH----HHHHHHHHHHHHHHhccccccccchhHHH
Confidence 111111111110000 01111111111110 000000000000000 0
Q ss_pred --------c------------ccccccccc--------cchhhhhhccc---cccccccc---ccCCCCCCCcCCC-CcC
Q 001139 737 --------R------------REDTNKRIQ--------LPREIRCLRQL---ELVPVVTA---TVPIDCTCQYNEG-SFP 781 (1143)
Q Consensus 737 --------~------------~~~~~~~~~--------~~~~~~~l~~l---~~~p~~t~---~lp~~~~~~~~~~-~~~ 781 (1143)
. ....+.... +++.+.++... ...|.... .+.+..+++|..+ ++|
T Consensus 1686 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~P~~~~~~k~~v 1765 (2105)
T COG5032 1686 SFLKELIKKSPRKIRKKFKIDISLLNLSRKLYISVLRSIRKRLKRLLELRLKKVSPKLLLFHAFLEIKLPGQYLLDKPFV 1765 (2105)
T ss_pred HHHHHHHhhhHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHhccccccccCCcccccCCCCc
Confidence 0 000000000 01111110000 00111000 0111122344333 689
Q ss_pred ccccccceEEEecC-CCCceEEEEEcCCCCeeeEEeecCCcchhhhHHHHHHHHHHHHHHhcCccccccceeeeeceEEE
Q 001139 782 YFKGLAESVMVMNG-INAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVP 860 (1143)
Q Consensus 782 ~i~~~~~~~~v~~s-~~~Pk~i~~~gsdG~~y~~l~K~g~ddlR~D~r~~Ql~~~~N~ll~~~~et~~r~L~i~~y~Vip 860 (1143)
.|.+|.|++.++.| .++|++++++|+||+.|++++|+ +||+|||+++||++++||.+|+++++|+||++.|++|+|||
T Consensus 1766 ~I~~f~p~~~~~~~~~~~p~rl~~rgsdG~~y~~i~K~-~dDlRQD~~~~Ql~~l~n~iL~~~~~~~~R~l~i~~Y~Vip 1844 (2105)
T COG5032 1766 LIERFEPEVSVVKSHLQRPRRLTIRGSDGKLYSFIVKG-GDDLRQDELALQLIRLMNKILKKDKETRRRDLWIRPYKVIP 1844 (2105)
T ss_pred eEEEecCceeeeecccccceEEEEEecCCcEEEEEeec-CccchHHHHHHHHHHHHHHHHHhChHhhhcCccceeeeeEe
Confidence 99999999999977 99999999999999999999995 69999999999999999999999999999999999999999
Q ss_pred cCCCCceeEecCCCcchHHHhhhhccCCCCCCCCCCCcchh-HHHHhhccchHhHHHHHHHHHHhhhhhHHHHHHHhcCC
Q 001139 861 FTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSF-LKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQ 939 (1143)
Q Consensus 861 ls~~~gliE~v~~~~~l~~il~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~~~~ 939 (1143)
+||++|+||||||++|+++|+....+..+... +... ..++-.......|.+.|...+...+|+|++||.+.|++
T Consensus 1845 ls~~~GiIe~vpn~~tl~sI~~~~~~~~~i~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~f~~ 1919 (2105)
T COG5032 1845 LSPGSGIIEWVPNSDTLHSILREYHKRKNISI-----DQEKKLAARLDNLKLLLKDEFFTKATLKSPPVLYDWFSESFPN 1919 (2105)
T ss_pred ccCCcceEEEecCcchHHHHHHHHhhhcCCCh-----hHHhhhhhhhhhhcccchhHHhhhhhcCCCchHHHHHHHhcCC
Confidence 99999999999999999999976544322210 0000 00111111223577888888888889999999999999
Q ss_pred chHHHHHHHHHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhcc-ccCCCCCCCCCccccHHHHhhhcc
Q 001139 940 PAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQ-GLMLKTPERVPFRLTRDIIDGMGV 1018 (1143)
Q Consensus 940 ~~~w~~~r~~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~-~~~l~~pE~VPFRLT~~i~~~~g~ 1018 (1143)
|.+|+.+|+||++|+|+|||+|||||+|||||+|||||..||+++|||||+||+. |..+++||.|||||||||+++||+
T Consensus 1920 ~~~w~~aR~Ny~~SlA~ySvigYiLglgDRH~~NIliD~~sG~viHiDFg~il~~~p~~~~~pE~vPFrLT~~iv~~mg~ 1999 (2105)
T COG5032 1920 PEDWLTARTNFARSLAVYSVIGYILGLGDRHPGNILIDRSSGHVIHIDFGFILFNAPGRFPFPEKVPFRLTRNIVEAMGV 1999 (2105)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHccCCCcCCceEEEEcCCCcEEEehHHHHHhcCCCCCCCcccCcHhhhHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999777665 556999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHhhChHHHHHHHHHHccCCccccccChhHHHhhhhhcccccccCCCCCccccccchhHHHHHH
Q 001139 1019 TGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALI 1098 (1143)
Q Consensus 1019 ~g~eG~F~~~~~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 1098 (1143)
+|+||.|+.+|+.++++||+|.+.|++++++|++|||++|...|- . ...++.++..+..
T Consensus 2000 ~g~EG~Fr~~c~~~~~~LRk~~~~L~~~le~f~~d~l~~W~~~p~-------------------~--~~~~~~~~~~v~~ 2058 (2105)
T COG5032 2000 SGVEGSFRELCETAFRALRKNADSLMNVLELFVRDPLIEWRRLPC-------------------F--REIQNNEIVNVLE 2058 (2105)
T ss_pred cchhhHHHHHHHHHHHHHhccHHHHHHHHHHHhcCcchhhhcCcc-------------------c--cchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999972110 0 0123556677889
Q ss_pred HHhhccCCCCC--CCccCHHHHHHHHHHHccChhhhHhhCcccccCC
Q 001139 1099 RVKQKLDGYEG--GEMRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL 1143 (1143)
Q Consensus 1099 ~v~~kl~g~~~--~~~~sv~~~V~~LI~~Atd~~nL~~m~~gW~pwl 1143 (1143)
|+..|+.|.+. ...++|+++|+.||++|||+.|||+||+||+||+
T Consensus 2059 rf~~kl~~~~~~~~~~l~I~~sv~~li~~a~d~~~L~~~yi~w~~f~ 2105 (2105)
T COG5032 2059 RFRLKLSEKDAEKFVDLLINKSVESLITQATDPFQLATMYIGWMPFW 2105 (2105)
T ss_pred HHHHHhhhhhhhhhcCCcHHHHHHHHHHHHcCHHHHHhhccccccCC
Confidence 99999998654 3578999999999999999999999999999997
No 6
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=100.00 E-value=2.5e-70 Score=607.36 Aligned_cols=273 Identities=66% Similarity=1.167 Sum_probs=256.1
Q ss_pred cccccceEEEecCCCCceEEEEEcCCCCeeeEEeecCCcchhhhHHHHHHHHHHHHHHhcCccccccceeeeeceEEEcC
Q 001139 783 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 862 (1143)
Q Consensus 783 i~~~~~~~~v~~s~~~Pk~i~~~gsdG~~y~~l~K~g~ddlR~D~r~~Ql~~~~N~ll~~~~et~~r~L~i~~y~Vipls 862 (1143)
|.+|.|.|.|++|+++||+|+|+|+||+.|.||+|. +||+|+|+|+||||++||++|++++||++|+|.++||.|||||
T Consensus 1 ~~~f~~~v~v~~s~~~Pkri~~~gsdG~~y~fl~K~-~dDlR~D~rimQl~~~~n~il~~~~e~~~r~l~i~~y~vipls 79 (279)
T cd05171 1 VSKFKDVFTTAGGINAPKIITCVGSDGKKYKQLLKG-GDDDRQDAVMEQVFQLVNTLLERNKETRKRKLRIRTYKVVPLS 79 (279)
T ss_pred CCCccCeEEEecCCCCCEEEEEECCCCCEEEEEecC-CCcccHHHHHHHHHHHHHHHHhhChhhhhcCceeecceEEecC
Confidence 468999999999999999999999999999999995 5999999999999999999999999999999999999999999
Q ss_pred CCCceeEecCCCcchHHHhhhhccCCCCCCCCCCCcchhHHHHhhcc-----chHhHHHHHHHHHHhhhhhHHHHHHHhc
Q 001139 863 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMS-----NVKDKRIAFQEVCENFRPVLHYFFLERF 937 (1143)
Q Consensus 863 ~~~gliE~v~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~k~~~f~~i~~~~~pvl~~~~~~~~ 937 (1143)
+++||||||+|++||.+|+.... +.+.++.+.++....+++.+. ...+++++|++++.+++|++++||.+.|
T Consensus 80 ~~~GLIe~v~~~~tl~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~f~~i~~~~~p~l~~~f~~~~ 156 (279)
T cd05171 80 PRAGILEWVDGTIPLGEYLVGAT---GAHERYRPGDWTARKCRKAMAEVQKESNEERLKVFLKICKNFRPVFRYFFLEKF 156 (279)
T ss_pred CCceEEEECCCChhHHHHHHHhh---hcccccCccchhHHHHHHHHHHhhcCCHHHHHHHHHHHHHhCcHHHHHHHHHHC
Confidence 99999999999999999997543 456677776666555555442 2346889999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhccccCCCCCCCCCccccHHHHhhhc
Q 001139 938 LQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMG 1017 (1143)
Q Consensus 938 ~~~~~w~~~r~~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~~~~l~~pE~VPFRLT~~i~~~~g 1017 (1143)
++|.+||.+|++||+|+|++||+|||||||||||+||||+..||+|+|||||++|++|+.+++||+|||||||||+++||
T Consensus 157 ~~~~~~~~~r~~F~~S~A~~s~~~yilglgDRh~~NIll~~~tG~v~hiDf~~~f~~~~~l~~pe~vPFRLT~~~~~~lg 236 (279)
T cd05171 157 LDPQDWFERRLAYTRSVATSSIVGYILGLGDRHANNILIDEKTAEVVHIDLGIAFEQGKILPVPETVPFRLTRDIVDGMG 236 (279)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccEEEEcCcCcEEEEechhhhccCcCCCCCCcCChhhhHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHhhChHHHHHHHHHHccCCccccc
Q 001139 1018 VTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1059 (1143)
Q Consensus 1018 ~~g~eG~F~~~~~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~w~ 1059 (1143)
+.|++|.|+.+|++++++||++++.|+++|++|+|||+++|+
T Consensus 237 ~~g~~g~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~dpl~~W~ 278 (279)
T cd05171 237 ITGVEGVFRRCCEKTLEVLRDNKDAILTILEVLLYDPLYSWT 278 (279)
T ss_pred CCCCcchHHHHHHHHHHHHHcChHHHHHHHHHHHhCcccccc
Confidence 999999999999999999999999999999999999999996
No 7
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=100.00 E-value=1.3e-68 Score=600.07 Aligned_cols=276 Identities=37% Similarity=0.653 Sum_probs=243.8
Q ss_pred cccccceEEEecCCCCceEEEEEcCCCCeeeEEeecCCcchhhhHHHHHHHHHHHHHHhcCccccccceeeeeceEEEcC
Q 001139 783 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 862 (1143)
Q Consensus 783 i~~~~~~~~v~~s~~~Pk~i~~~gsdG~~y~~l~K~g~ddlR~D~r~~Ql~~~~N~ll~~~~et~~r~L~i~~y~Vipls 862 (1143)
|.+|.++|.|++|+++||+|+++|+||+.|+||+| |+||||+|+||||||++||.+|+++++|++|+|.|+||.||||+
T Consensus 1 I~~f~~~v~V~~Sk~~Pkri~~~gsDG~~y~fLlK-~~dDLR~D~RimQlf~l~N~ll~~~~~~~~r~L~i~tY~ViPLs 79 (307)
T cd05170 1 IESVGSTVTILPTKTKPKKLAFLGSDGKKYTYLFK-GREDLHLDERIMQFLSIVNTMFASIKDQESPRFRARHYSVTPLG 79 (307)
T ss_pred CccccCeEEEEecCCCceEEEEECCCCCEEEEEec-CCCcccHHHHHHHHHHHHHHHHHhChhhhccCceeecceEEEcC
Confidence 67899999999999999999999999999999999 46999999999999999999999999999999999999999999
Q ss_pred CCCceeEecCCCcchHHHhhhhccCCCC----------CCC------CCCCcchhHHHHhhcc-------------chHh
Q 001139 863 PSAGILEWVDGTVPLGDYLIGSTRNGGA----------HGR------YGIGDWSFLKCREHMS-------------NVKD 913 (1143)
Q Consensus 863 ~~~gliE~v~~~~~l~~il~~~~~~~~~----------~~~------~~~~~~~~~~~~~~~~-------------~~~~ 913 (1143)
+++||||||+|+.||.+++..+....+. +.. ..+.+..+.+....+. ....
T Consensus 80 ~~~GLIEwv~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 159 (307)
T cd05170 80 PRSGLIQWVDGATPLFGLYKRWQQREAVLQAQKSQVGYQNPQIPGIVPRPSDLFYNKITPALKAHGLSLDVSRRDWPLSV 159 (307)
T ss_pred CCcceEEEcCCChhHHHHHHHHHHhhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHhhccccccchhhccHHH
Confidence 9999999999999999998653321110 000 0000111111111111 1124
Q ss_pred HHHHHHHHHHhhhh-hHHHHHHHhcCCchHHHHHHHHHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhh
Q 001139 914 KRIAFQEVCENFRP-VLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAF 992 (1143)
Q Consensus 914 k~~~f~~i~~~~~p-vl~~~~~~~~~~~~~w~~~r~~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f 992 (1143)
++++|.+++++++| .++++++..+++|.+||.+|++||+|+|++||+|||||||||||+||||+..||+++|||||++|
T Consensus 160 ~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~w~~~r~~f~~s~A~~s~~~yilglgDRh~~NIli~~~tG~v~hiDf~~~f 239 (307)
T cd05170 160 LRQVLDELMQETPKDLLARELWCSSTTSSEWWSVTQRYARSTAVMSMIGYVIGLGDRHLDNVLIDLKTGEVVHIDYNVCF 239 (307)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCccEEEEcCCCcEEEEeeHhhh
Confidence 68899999999888 67888888999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccHHHHhhhcccccccchHHHHHHHHHHHhhChHHHHHHHHHHccCCccccc
Q 001139 993 EQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1059 (1143)
Q Consensus 993 ~~~~~l~~pE~VPFRLT~~i~~~~g~~g~eG~F~~~~~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~w~ 1059 (1143)
++|+.+++||.|||||||||+++||++|++|.|+.+|+.++++||++++.|+++|++|+||||++|.
T Consensus 240 ~~~~~l~~pE~VPFRLT~~~~~~lg~~g~~G~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~DPl~~W~ 306 (307)
T cd05170 240 EKGKSLRIPEKVPFRMTQNIETALGLTGVEGVFRLSCEQVLHIMRRGRETLLTLLEAFVYDPLVDWT 306 (307)
T ss_pred cccCCCCCCCCCCeeeCHHHHHHhCCCCCchhHHHHHHHHHHHHHcCHHHHHHHHHHHhhCcccccc
Confidence 9999899999999999999999999999999999999999999999999999999999999999996
No 8
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=100.00 E-value=2.2e-68 Score=581.54 Aligned_cols=247 Identities=23% Similarity=0.376 Sum_probs=236.4
Q ss_pred cccccceEEEe-cCCCCceEEEEEcCCCCeeeEEeec-CCcchhhhHHHHHHHHHHHHHHhcCccccccceeeeeceEEE
Q 001139 783 FKGLAESVMVM-NGINAPKVVECFGSDGHKYRQLAKS-GNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVP 860 (1143)
Q Consensus 783 i~~~~~~~~v~-~s~~~Pk~i~~~gsdG~~y~~l~K~-g~ddlR~D~r~~Ql~~~~N~ll~~~~et~~r~L~i~~y~Vip 860 (1143)
|.+|.|.|+|+ ++.++||+|+++|+||+.|+||+|. |++|+|+|+||||||++||.+|.+++||++|+|.+++|.|||
T Consensus 1 i~rf~p~~~iv~~~~~~pkri~i~gsdG~~y~fLvk~~~~~d~R~d~Ri~Ql~~liN~~l~~~~et~~r~l~i~~y~viP 80 (253)
T cd05163 1 IERFLPTVEIVRGHGYCYRRLTIRGHDGSIYPFLVQYPAARQARREERVLQLFRTLNSVLSKNKETRRRNLQFTLPLVVP 80 (253)
T ss_pred CcccCCeEEEEccCCCcCcEEEEECCCCCEEEEEEecCCchhHHHHHHHHHHHHHHHHHHhcCHHHHhCcccccceeEEE
Confidence 57899999876 7889999999999999999999994 468999999999999999999999999999999999999999
Q ss_pred cCCCCceeEecCCCcchHHHhhhhccCCCCCCCCCCCcchhHHHHhhccchHhHHHHHHHHHHhhhh--hHHHHHHHhcC
Q 001139 861 FTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRP--VLHYFFLERFL 938 (1143)
Q Consensus 861 ls~~~gliE~v~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~p--vl~~~~~~~~~ 938 (1143)
|++++|||||++++.|+.+++. .|+++|+++++++.| +|++||+++|+
T Consensus 81 Ls~~~gLie~~~~~~tl~~i~~------------------------------~~~~~~~~i~~~~~p~~~l~~~~~~~~~ 130 (253)
T cd05163 81 LSPQIRLVEDDPSYISLQEIYE------------------------------DKLEIYNEIQKDMVPDTILKNYILSTFP 130 (253)
T ss_pred cCCccceEEECCCCccHHHHHH------------------------------HHHHHHHHHHHhcCCHHHHHHHHHHHCC
Confidence 9999999999999999998863 177899999999666 99999999999
Q ss_pred CchHHHHHHHHHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhccccC-CCCCCCCCccccHHHHhhhc
Q 001139 939 QPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LKTPERVPFRLTRDIIDGMG 1017 (1143)
Q Consensus 939 ~~~~w~~~r~~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~~~~-l~~pE~VPFRLT~~i~~~~g 1017 (1143)
+|++||.+|++||+|+|++||+|||||||||||+|||||..||+|+|||||++|++|+. +++||+|||||||||+++||
T Consensus 131 ~~~~~~~~r~~ft~s~A~~s~~gYilglgdRh~~nili~~~tG~v~hiDf~~~f~~~~~~~~~pE~VPFRLT~ni~~~~g 210 (253)
T cd05163 131 TYQDYWLFRKQFTYQLALLSFMTYILSINNRNPDKIFISRDTGNVYQSDLLPSINNNKPLFHNNEPVPFRLTPNIQHLIG 210 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhEEEEcCCCcEEEEeeeeeecCCCcCCCCCCcCCcccCHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999986 48999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHhhChHHHHHHHHHHccCCccccc
Q 001139 1018 VTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1059 (1143)
Q Consensus 1018 ~~g~eG~F~~~~~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~w~ 1059 (1143)
++|+||.|+.+|++++++||++++.|+++|++|+||||++|.
T Consensus 211 ~~g~eG~f~~~~~~~~~~Lr~~~~~l~~~L~~fi~Dpl~~W~ 252 (253)
T cd05163 211 PIGLEGILTSSMMAIARCLTEPEFDLENALQLFIRDELIAWH 252 (253)
T ss_pred CcCcCCcHHHHHHHHHHHHhcCHHHHHHHHHHHHcChhhhhc
Confidence 999999999999999999999999999999999999999996
No 9
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=100.00 E-value=5.2e-68 Score=592.27 Aligned_cols=276 Identities=37% Similarity=0.674 Sum_probs=245.8
Q ss_pred cccccceEEEecCCCCceEEEEEcCCCCeeeEEeecCCcchhhhHHHHHHHHHHHHHHhcCccccccceeeeeceEEEcC
Q 001139 783 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 862 (1143)
Q Consensus 783 i~~~~~~~~v~~s~~~Pk~i~~~gsdG~~y~~l~K~g~ddlR~D~r~~Ql~~~~N~ll~~~~et~~r~L~i~~y~Vipls 862 (1143)
|.+|.|+|+|++|+++||+|+++|+||+.|+||+|. +||+|||+|+||+|++||.+|+++++|++|+|.++||.|||++
T Consensus 1 I~~f~~~v~v~~s~~~pk~i~~~gsdG~~y~fl~K~-~dDlR~D~r~~ql~~~~n~il~~~~~~~~~~l~~~ty~Vipls 79 (280)
T cd05169 1 ISSFDPVLKVIPSKQRPRRLTIVGSDGKEYKFLLKG-HEDLRLDERVMQLFGLINTLLKNDSETSKRNLSIQTYSVIPLS 79 (280)
T ss_pred CccccCeEEEEeCCCCCeEEEEECCCCCEEEEeecC-CCcchHHHHHHHHHHHHHHHHHhChhhhhcCcceeeccEEecC
Confidence 678999999999999999999999999999999994 6999999999999999999999999999999999999999999
Q ss_pred CCCceeEecCCCcchHHHhhhhccCCCCCCCCCCCcc--hhHHHHhhccchHhHHHHHHHHHHhhhh-hHHHHHHHhcCC
Q 001139 863 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDW--SFLKCREHMSNVKDKRIAFQEVCENFRP-VLHYFFLERFLQ 939 (1143)
Q Consensus 863 ~~~gliE~v~~~~~l~~il~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~k~~~f~~i~~~~~p-vl~~~~~~~~~~ 939 (1143)
+++||||||+|+.||.+|+.......+.+.......+ ......+.+. ..+|.++|++++++.+| ++++||...+++
T Consensus 80 ~~~GlIE~v~~~~sl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~~~~i~~~~~~~~l~~~~~~~~~~ 158 (280)
T cd05169 80 PNVGLIGWVPGCDTLHSLIREYRKKRNIPLNLEHRLMELKSAPDYDNLT-LIQKLEVFEYALNNTPGDDLRKILWLKSPS 158 (280)
T ss_pred CCcceEEeCCCCchHHHHHHHHHHHcCCChhHHHHHHHHHhhhhhhhCC-HHHHHHHHHHHHHhCCHHHHHHHHHHhCCC
Confidence 9999999999999999999765443222110000000 0001112222 23688999999998776 999999999999
Q ss_pred chHHHHHHHHHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhccccC-CCCCCCCCccccHHHHhhhcc
Q 001139 940 PAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LKTPERVPFRLTRDIIDGMGV 1018 (1143)
Q Consensus 940 ~~~w~~~r~~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~~~~-l~~pE~VPFRLT~~i~~~~g~ 1018 (1143)
|..|+.+|++|++|+|++||+|||||||||||+|||||..||+++|||||++|++|+. +++||.|||||||||+++||+
T Consensus 159 ~~~w~~~r~~F~~S~A~~Sv~~YilglgDRH~~NIll~~~tG~v~HIDfg~~f~~~~~~~~~pE~VPFRLT~~~~~~lG~ 238 (280)
T cd05169 159 SEAWLERRTNFTRSLAVMSMVGYILGLGDRHPSNIMIDRLTGKVIHIDFGDCFEVAMHREKFPEKVPFRLTRMLVNALGV 238 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhheeccCCCcceEEEEcCCCCEEEEecHHHHhhccccCCCCCcCCcccCHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999986 689999999999999999999
Q ss_pred cccccchHHHHHHHHHHHhhChHHHHHHHHHHccCCcccccc
Q 001139 1019 TGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1060 (1143)
Q Consensus 1019 ~g~eG~F~~~~~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~w~~ 1060 (1143)
+|++|.|+.+|+.++++||++++.|+++|++|+||||++|.+
T Consensus 239 ~g~~G~F~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~W~~ 280 (280)
T cd05169 239 SGIEGTFRTTCEDVMNVLRENKESLMAVLEAFVHDPLLSWRL 280 (280)
T ss_pred CCCCCchHHHHHHHHHHHhcChHHHHHHHHHHHhCccccccC
Confidence 999999999999999999999999999999999999999963
No 10
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=100.00 E-value=3.3e-66 Score=558.26 Aligned_cols=233 Identities=35% Similarity=0.663 Sum_probs=225.3
Q ss_pred cccccceEEEecCCCCceEEEEEcCCCCeeeEEeecCCcchhhhHHHHHHHHHHHHHHhcCccccccceeeeeceEEEcC
Q 001139 783 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 862 (1143)
Q Consensus 783 i~~~~~~~~v~~s~~~Pk~i~~~gsdG~~y~~l~K~g~ddlR~D~r~~Ql~~~~N~ll~~~~et~~r~L~i~~y~Vipls 862 (1143)
|.+|.++|+|++|+++||+|+|+|+||+.|+||+|. +||+|||+|+||+|++||.+|+++++|++|+|.+++|+|+|++
T Consensus 1 i~~~~~~v~v~~S~~~Pkri~~~~~dG~~~~fl~K~-~dDlR~D~r~~Ql~~l~n~~l~~~~~~~~~~l~~~~y~vipls 79 (235)
T cd05172 1 IVGFDERVLVLSSLRKPKRITIRGSDEKEYPFLVKG-GEDLRQDQRIQQLFGVMNNILAQDTACRQRALQLRTYQVIPMT 79 (235)
T ss_pred CCCcCCceEEeccCCCCEEEEEECCCCCEEEEEEEC-CCcccHHHHHHHHHHHHHHHHHhChhhccCCceeecceEEEeC
Confidence 578999999999999999999999999999999995 5999999999999999999999999999999999999999999
Q ss_pred CCCceeEecCCCcchHHHhhhhccCCCCCCCCCCCcchhHHHHhhccchHhHHHHHHHHHHhhhhhHHHHHHHhcCCchH
Q 001139 863 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAY 942 (1143)
Q Consensus 863 ~~~gliE~v~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~~~~~~~ 942 (1143)
+++||||||+++.||++|+.. +++++||.+.+++|.+
T Consensus 80 ~~~GlIE~v~~~~sl~~i~~~-------------------------------------------~~l~~~~~~~~~~~~~ 116 (235)
T cd05172 80 PRFGLIEWLENTTPLKEILKN-------------------------------------------DLLRRALVEMSASPEA 116 (235)
T ss_pred CCCceEEEcCCchhHHHHHhh-------------------------------------------HHHHHHHHHHCCCHHH
Confidence 999999999999999998641 4478899999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhccccC-CCCCCCCCccccHHHHhhhccccc
Q 001139 943 WFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LKTPERVPFRLTRDIIDGMGVTGV 1021 (1143)
Q Consensus 943 w~~~r~~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~~~~-l~~pE~VPFRLT~~i~~~~g~~g~ 1021 (1143)
|+.+|++|++|+|++|++|||||||||||+||||++.||+++|||||++|++++. +++||+|||||||||+++||+.|+
T Consensus 117 ~~~~r~~F~~S~A~~S~~~YilglgDRH~~NIli~~~tG~v~HIDfg~~f~~~~~~~~~pE~vPFRLT~~~~~~~g~~g~ 196 (235)
T cd05172 117 FLSLRDHFAKSLAAMCVSHWILGIGDRHLSNFLVDLETGGLVGIDFGHAFGTATQFLPIPELMPFRLTPQFVNLMEPMKA 196 (235)
T ss_pred HHHHHHHHHHHHHHHHHHhheeeccCCCcccEEEECCCCcEEEEeeHhhhccCCccCCCCCCCCeeeCHHHHHHhCCCCC
Confidence 9999999999999999999999999999999999999999999999999999987 999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhhChHHHHHHHHHHccCCccccc
Q 001139 1022 EGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1059 (1143)
Q Consensus 1022 eG~F~~~~~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~w~ 1059 (1143)
+|.|+.+|+.++++||++++.|+++|++|+|||+.+|.
T Consensus 197 ~G~f~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~w~ 234 (235)
T cd05172 197 DGLLRSCMVHTLRALRNERHLLLSTMDVFVKEPSLDWK 234 (235)
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHhhCchhhhc
Confidence 99999999999999999999999999999999999996
No 11
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=100.00 E-value=8.8e-65 Score=548.53 Aligned_cols=236 Identities=48% Similarity=0.902 Sum_probs=227.6
Q ss_pred cccccceEEEecCCCCceEEEEEcCCCCeeeEEeecCCcchhhhHHHHHHHHHHHHHHhcCccccccceeeeeceEEEcC
Q 001139 783 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 862 (1143)
Q Consensus 783 i~~~~~~~~v~~s~~~Pk~i~~~gsdG~~y~~l~K~g~ddlR~D~r~~Ql~~~~N~ll~~~~et~~r~L~i~~y~Vipls 862 (1143)
|.+|+++++|++|+++||+|+++|+||+.|+||+|. +||||||+|+||+|+++|.+|.++++|++++|.++||.|||++
T Consensus 1 i~~~~~~~~v~~s~~~P~~i~~~~~dG~~~~~l~K~-~dDLRqD~ri~ql~~l~n~il~~~~~~~~~~l~~~~y~Vipl~ 79 (237)
T cd00892 1 ISGFEDEVEILNSLQKPKKITLIGSDGNSYPFLCKP-KDDLRKDARLMEFNTLINRLLSKDPESRRRRLYIRTYAVIPLN 79 (237)
T ss_pred CccccCeEEEEeccCCceEEEEEcCCCCEEEEEEeC-CCcccHHHHHHHHHHHHHHHHHhCchhccCceeeEeceEEEcC
Confidence 578999999999999999999999999999999995 5999999999999999999999999999999999999999999
Q ss_pred CCCceeEecCCCcchHHHhhhhccCCCCCCCCCCCcchhHHHHhhccchHhHHHHHHHHHHhhhhhHHHHHHHhcCCchH
Q 001139 863 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAY 942 (1143)
Q Consensus 863 ~~~gliE~v~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~~~~~~~ 942 (1143)
+++||||||+|++||++++.... +|++++||.+.|++|.+
T Consensus 80 ~~~GlIE~v~~~~sl~~i~~~~~----------------------------------------~~~l~~~~~~~~~~~~~ 119 (237)
T cd00892 80 EECGIIEWVPNTATLRSILLEIY----------------------------------------PPVFHEWFLENFPDPSA 119 (237)
T ss_pred CCCceEEECCCCccHHHHHHHhC----------------------------------------CHHHHHHHHHHCcCHHH
Confidence 99999999999999999875310 46789999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhccccCCCCCCCCCccccHHHHhhhcccccc
Q 001139 943 WFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVE 1022 (1143)
Q Consensus 943 w~~~r~~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~~~~l~~pE~VPFRLT~~i~~~~g~~g~e 1022 (1143)
|+.+|++|+.|+|++|++|||||||||||+||||++.||+++|||||++|++|+.+++||+|||||||||+++||+.|++
T Consensus 120 ~~~~~~~F~~SlA~~s~~~YilgigDRh~~NIli~~~tG~~~HIDfg~~~~~~~~~~~pe~vPFRLT~~~~~~lg~~g~~ 199 (237)
T cd00892 120 WLKARNAYTRSTAVMSMVGYILGLGDRHGENILFDSNTGDVVHVDFNCLFDKGETLEVPERVPFRLTQNMVDAMGVLGVE 199 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCcccEEEEcCCCcEEEEehHhhhcccccCCCCCCCCcccCHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhhChHHHHHHHHHHccCCccccc
Q 001139 1023 GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1059 (1143)
Q Consensus 1023 G~F~~~~~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~w~ 1059 (1143)
|.|+.+|+.++++||++++.|+++|++|+||||++|.
T Consensus 200 g~F~~~~~~~~~~Lr~~~~~l~~~l~~fi~dpl~~w~ 236 (237)
T cd00892 200 GLFRKSCEVTLRLLRSNKETLMSVLETFIHDPLVEWS 236 (237)
T ss_pred CchHHHHHHHHHHHHhCHHHHHHHHHHHhhccchhcc
Confidence 9999999999999999999999999999999999996
No 12
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=100.00 E-value=3e-61 Score=516.47 Aligned_cols=222 Identities=49% Similarity=0.891 Sum_probs=215.3
Q ss_pred cccccceEEEecCCCCceEEEEEcCCCCeeeEEeecCCcchhhhHHHHHHHHHHHHHHhcCccccccceeeeeceEEEcC
Q 001139 783 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 862 (1143)
Q Consensus 783 i~~~~~~~~v~~s~~~Pk~i~~~gsdG~~y~~l~K~g~ddlR~D~r~~Ql~~~~N~ll~~~~et~~r~L~i~~y~Vipls 862 (1143)
|.+|.+.|.|++|+++||+|+++|+||+.|.||+|. .||+|||+|+||+|+++|.+|++++||++|++.++||.|+|++
T Consensus 1 i~~~~~~v~v~~S~~~P~~i~~~~~dG~~~~fl~K~-~dDlR~D~rv~ql~~~~n~il~~~~~~~~~~l~~~~y~vipls 79 (222)
T cd05164 1 IASFDDAVRILGSKQKPKKITLTGSDGKKYLFLVKG-GEDLRQDQRIMQLFQFCNTLLAKDAECRRRKLTIRTYAVIPLN 79 (222)
T ss_pred CccccCeeEEecccCCCEEEEEECCCCCEEEEEEeC-CCcccHHHHHHHHHHHHHHHHHhCchhccCceEeecceEEEcC
Confidence 578999999999999999999999999999999995 5999999999999999999999999999999999999999999
Q ss_pred CCCceeEecCCCcchHHHhhhhccCCCCCCCCCCCcchhHHHHhhccchHhHHHHHHHHHHhhhhhHHHHHHHhcCCchH
Q 001139 863 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAY 942 (1143)
Q Consensus 863 ~~~gliE~v~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~~~~~~~ 942 (1143)
+++||||||+|+.|++ +++++||...|+++++
T Consensus 80 ~~~GliE~v~~~~sl~------------------------------------------------~~l~~~~~~~~~~~~~ 111 (222)
T cd05164 80 SRSGLIEWVEGTTTLK------------------------------------------------PVLKKWFWLQFPDPEQ 111 (222)
T ss_pred CCCceEEEcCCcchHH------------------------------------------------HHHHHHHHHHCcCHHH
Confidence 9999999999999987 2366788899999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhccccCCCCCCCCCccccHHHHhhhcccccc
Q 001139 943 WFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVE 1022 (1143)
Q Consensus 943 w~~~r~~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~~~~l~~pE~VPFRLT~~i~~~~g~~g~e 1022 (1143)
||.+|++|+.|+|++|++|||||||||||+||||+..||+++|||||++|++|+.+++||.|||||||||+++||+.|++
T Consensus 112 ~~~~r~~F~~SlA~~s~~~YvlglgDRh~~NIli~~~tG~v~hIDf~~~~~~~~~~~~~e~vPFRLT~~~~~~lg~~g~~ 191 (222)
T cd05164 112 WFAARKNYTRSTAVMSIVGYILGLGDRHLDNILIDRETGEVVHIDFGCIFEKGKTLPVPELVPFRLTRNIINGMGITGVE 191 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCceEEEECCCCcEEEEccHHhhccCCCCCCCCCCCEEeCHHHHHHhCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhhChHHHHHHHHHHccC
Q 001139 1023 GVFRRCCEKTLSVMRTNKEALLTIVEVFIHD 1053 (1143)
Q Consensus 1023 G~F~~~~~~~~~~Lr~~~~~l~~~L~~f~~D 1053 (1143)
|.|+.+|++++++||++++.|+++|++|+||
T Consensus 192 G~f~~~~~~~~~~Lr~~~~~l~s~l~~fv~d 222 (222)
T cd05164 192 GLFRKICEQTLEVFRKHRDTLIAFLEVFVYD 222 (222)
T ss_pred ChHHHHHHHHHHHHHhCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999997
No 13
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=100.00 E-value=2.7e-56 Score=479.66 Aligned_cols=218 Identities=36% Similarity=0.618 Sum_probs=209.8
Q ss_pred ccccceEEEecCCCCceEEEEEcCCCCeeeEEeecCCcchhhhHHHHHHHHHHHHHHhcCccccccceeeeeceEEEcCC
Q 001139 784 KGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTP 863 (1143)
Q Consensus 784 ~~~~~~~~v~~s~~~Pk~i~~~gsdG~~y~~l~K~g~ddlR~D~r~~Ql~~~~N~ll~~~~et~~r~L~i~~y~Vipls~ 863 (1143)
++|.+.++|++|+++||+|.++|+||+.|+||+|. +||+|||+|++|+|+++|.+|++++ ++++.+++|.|||+++
T Consensus 2 ~~~~~~~~v~~s~~~P~~l~~~~~dg~~~~~l~K~-~ddlR~D~~~~ql~~~~n~il~~~~---~~~l~~~~y~vipls~ 77 (219)
T cd00142 2 AIDVKICRIMPSKTRPKKLTLIGADGKEYRILFKN-GDDLRQDERVLQFIRLMNKILKKEL---GLDLFLTTYSVIPLSP 77 (219)
T ss_pred CccCCceEEEcccCCCEEEEEEccCCCEEEEEEeC-CCchhHHHHHHHHHHHHHHHHHhCC---CCCceEEeEEEEEecC
Confidence 56889999999999999999999999999999996 5999999999999999999999886 6899999999999999
Q ss_pred CCceeEecCCCcchHHHhhhhccCCCCCCCCCCCcchhHHHHhhccchHhHHHHHHHHHHhhhhhHHHHHHHhcCCchHH
Q 001139 864 SAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYW 943 (1143)
Q Consensus 864 ~~gliE~v~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~~~~~~~w 943 (1143)
++||||||+|+.|+. +.+++||...++++++|
T Consensus 78 ~~GlIE~v~~~~sl~------------------------------------------------~~l~~~~~~~~~~~~~~ 109 (219)
T cd00142 78 RSGLIEVVPGSVTLE------------------------------------------------DDLSKWLKRKSPDEDEW 109 (219)
T ss_pred CceEEEEeCCCchhH------------------------------------------------HHHHHHHHHHCcCHHHH
Confidence 999999999999986 34778899999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhccccCCCCCCCCCccccHHHHhhhccccccc
Q 001139 944 FEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEG 1023 (1143)
Q Consensus 944 ~~~r~~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~~~~l~~pE~VPFRLT~~i~~~~g~~g~eG 1023 (1143)
+.+|++|+.|+|++|++|||||||||||+||||+..||+++|||||++|++++.+..||+|||||||||+++||+.|++|
T Consensus 110 ~~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~~~~G~~~hIDfg~~~~~~~~~~~~e~vPFRLT~~~~~~~g~~~~~g 189 (219)
T cd00142 110 QEARENFISSLAGYSVAGYILGIGDRHPDNIMIDLDTGKLFHIDFGFIFGKRKKFLGRERVPFRLTPDLVNALGTGGVFG 189 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCccEEEECCCCeEEEEeeHHhhCcCcCCCCCCCCCEeccHHHHHHhCCcchhh
Confidence 99999999999999999999999999999999999999999999999999999887899999999999999999999999
Q ss_pred chHHHHHHHHHHHhhChHHHHHHHHHHccC
Q 001139 1024 VFRRCCEKTLSVMRTNKEALLTIVEVFIHD 1053 (1143)
Q Consensus 1024 ~F~~~~~~~~~~Lr~~~~~l~~~L~~f~~D 1053 (1143)
.|+.+|+.++++||+|++.|+++|++|++|
T Consensus 190 ~F~~~~~~~~~~lr~~~~~i~~ll~~~~~~ 219 (219)
T cd00142 190 PFRSLCVKAMLILRRHAGLLLNLLSLMLRD 219 (219)
T ss_pred hHHHHHHHHHHHHHhChHHHHHHHHHhccC
Confidence 999999999999999999999999999987
No 14
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=100.00 E-value=5.3e-55 Score=494.19 Aligned_cols=250 Identities=25% Similarity=0.380 Sum_probs=221.0
Q ss_pred cccccCCCCCCCcCCCCcCcccccc-ceEEEecCCCCceEEEEEcCC--CCeeeEEeecCCcchhhhHHHHHHHHHHHHH
Q 001139 763 VTATVPIDCTCQYNEGSFPYFKGLA-ESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTF 839 (1143)
Q Consensus 763 ~t~~lp~~~~~~~~~~~~~~i~~~~-~~~~v~~s~~~Pk~i~~~gsd--G~~y~~l~K~g~ddlR~D~r~~Ql~~~~N~l 839 (1143)
.+..+|++|.. .+.+|. ++++|++|+++|++|+|.++| |+.|.+|+|.| ||||||++++|++++||.+
T Consensus 47 ~~~~lP~~p~~--------~i~~i~~~~~~v~~S~~~P~~l~f~~~d~~g~~~~~i~K~g-DDLRqD~l~~Ql~~l~~~i 117 (352)
T cd00891 47 QEFTLPLDPRL--------EIKGLIIEKCKVMDSKKKPLWLVFKNADPSGEPIKVIFKVG-DDLRQDMLTLQMIRLMDKI 117 (352)
T ss_pred CCccCCCCCce--------EEEEEeccceEEeccccCCcEEEEEecCCCCCEEEEEeccC-CchhHHHHHHHHHHHHHHH
Confidence 35677877753 345554 579999999999999999999 99999999965 9999999999999999999
Q ss_pred HhcCccccccceeeeeceEEEcCCCCceeEecCCCcchHHHhhhhccCCCCCCCCCCCcchhHHHHhhccchHhHHHHHH
Q 001139 840 LRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQ 919 (1143)
Q Consensus 840 l~~~~et~~r~L~i~~y~Vipls~~~gliE~v~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~ 919 (1143)
|+++. .+|.++||.|+|+++++||||||+|+.|+++|........+ +|.
T Consensus 118 ~~~~~----ldl~l~~Y~Vip~~~~~GlIE~V~ns~tl~~I~~~~~~~~~---------------------------~~~ 166 (352)
T cd00891 118 WKKEG----LDLRMTPYGCIATGDGVGMIEVVPNSETIAKIQKKAGGVGG---------------------------AFK 166 (352)
T ss_pred HHHCC----CCeeeEEEEEEEccCCceEEEEeCCCccHHHHHHhcCcccc---------------------------ccc
Confidence 99875 79999999999999999999999999999999864221110 111
Q ss_pred HHHHhhhhhHHHHHHHhcCCchHHHHHHHHHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhccccC-C
Q 001139 920 EVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-L 998 (1143)
Q Consensus 920 ~i~~~~~pvl~~~~~~~~~~~~~w~~~r~~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~~~~-l 998 (1143)
.+.+++||...++++..|..+|.+|++|+|+|||+||||||||||++||||| .+|+++|||||++|+.++. +
T Consensus 167 ------~~~l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysv~~YiLgigDRH~~NILi~-~~G~~~HIDFG~ilg~~~~~~ 239 (352)
T cd00891 167 ------DNPLMNWLKKKNKGEEDYEKAVENFTYSCAGYCVATYVLGIGDRHNDNIMLT-KTGHLFHIDFGHFLGNFKKKF 239 (352)
T ss_pred ------cchHHHHHHHhCCCHHHHHHHHHHHhhhHHHHHHHHHHccccccCCCceEEC-CCCCEEEEehHHhhccCCccC
Confidence 1247789999999999999999999999999999999999999999999999 5999999999999997653 3
Q ss_pred C-CCCCCCccccHHHHhhhcccccc--cchHHHHHHHHHHHhhChHHHHHHHHHHccCCccccc
Q 001139 999 K-TPERVPFRLTRDIIDGMGVTGVE--GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1059 (1143)
Q Consensus 999 ~-~pE~VPFRLT~~i~~~~g~~g~e--G~F~~~~~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~w~ 1059 (1143)
+ .||+||||||++|+++||+.|.+ |.|+.+|+.++.+||+|.+.|++++++|+++++.+|.
T Consensus 240 ~~~~E~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~LR~~~~~il~l~~lm~~~~lp~~~ 303 (352)
T cd00891 240 GIKRERAPFVLTPDMAYVMGGGDSEKFQRFEDLCCKAYNILRKHGNLFINLFSLMLSAGIPELQ 303 (352)
T ss_pred CCCCCCCCeeecHHHHHHhCCCCCcccchHHHHHHHHHHHHhcCHHHHHHHHHhhccCCCCccC
Confidence 3 69999999999999999999976 9999999999999999999999999999999998875
No 15
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=100.00 E-value=5.4e-55 Score=492.96 Aligned_cols=287 Identities=23% Similarity=0.441 Sum_probs=246.2
Q ss_pred ccccCCCCCCCcCCCCcCccccc-cceEEEecCCCCceEEEEEcCCC---CeeeEEeecCCcchhhhHHHHHHHHHHHHH
Q 001139 764 TATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSDG---HKYRQLAKSGNDDLRQDAVMEQFFGLVNTF 839 (1143)
Q Consensus 764 t~~lp~~~~~~~~~~~~~~i~~~-~~~~~v~~s~~~Pk~i~~~gsdG---~~y~~l~K~g~ddlR~D~r~~Ql~~~~N~l 839 (1143)
+..+|++|+. .|.++ .+++.|++|+++|++++|.++|| +.|.+|+|.| ||||||+++||++++||.+
T Consensus 52 ~~~lP~dp~~--------~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~~~~i~K~g-DDLRqD~l~~Ql~~lm~~i 122 (350)
T cd00896 52 PIPLPLDPSI--------EITGIIPEESSVFKSALMPLKLTFKTEKGNEEGEYPVIFKVG-DDLRQDQLVIQIISLMDRL 122 (350)
T ss_pred CCcCCCCCCe--------EEEEEecCceEEeccccCceEEEEEeCCCCCCceEEEEecCC-cchhHhHHHHHHHHHHHHH
Confidence 4567887753 33443 46899999999999999999999 9999999965 9999999999999999999
Q ss_pred HhcCccccccceeeeeceEEEcCCCCceeEecCCCcchHHHhhhhccCCCCCCCCCCCcchhHHHHhhccchHhHHHHHH
Q 001139 840 LRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQ 919 (1143)
Q Consensus 840 l~~~~et~~r~L~i~~y~Vipls~~~gliE~v~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~ 919 (1143)
|+++. ++|.++||.|+|+++++||||||+ +.|+++|+....
T Consensus 123 l~~~~----ldl~l~~Y~Vip~~~~~GlIE~V~-s~tl~~i~~~~~---------------------------------- 163 (350)
T cd00896 123 LKKEN----LDLKLTPYKVLATSPTDGLVEFIP-SVTLASILKKYG---------------------------------- 163 (350)
T ss_pred HHhCC----CCceeEEEEEEEcCCCCcceEEEe-cccHHHHHHHHH----------------------------------
Confidence 99885 899999999999999999999999 999999864210
Q ss_pred HHHHhhhhhHHHHHHHhcCCchH----HHHHHHHHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhccc
Q 001139 920 EVCENFRPVLHYFFLERFLQPAY----WFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQG 995 (1143)
Q Consensus 920 ~i~~~~~pvl~~~~~~~~~~~~~----w~~~r~~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~~ 995 (1143)
-+.+||...++++.. |..+|.+|++|+|+|||+||||||||||++||||+ .+|++||||||++|+++
T Consensus 164 --------~l~~~l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLGigDRH~~NILi~-~~G~~~HIDFG~ilg~~ 234 (350)
T cd00896 164 --------GILNYLRKLNPDDGGPLGISPEVMDTFVKSCAGYCVITYILGVGDRHLDNLLLT-KDGKLFHIDFGYILGRD 234 (350)
T ss_pred --------HHHHHHHHHCCCccccccchHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEc-CCCCEEEEEhHHhhCCC
Confidence 056778888888877 47999999999999999999999999999999999 59999999999999988
Q ss_pred cCCCCCCCCCccccHHHHhhhccccccc--chHHHHHHHHHHHhhChHHHHHHHHHHccCCccccccChhHHHhhhhhcc
Q 001139 996 LMLKTPERVPFRLTRDIIDGMGVTGVEG--VFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMD 1073 (1143)
Q Consensus 996 ~~l~~pE~VPFRLT~~i~~~~g~~g~eG--~F~~~~~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~w~~~~~~~~~~~~~~~ 1073 (1143)
+ .|++||||||++|+++||+.|.+| .|+..|+.++.+||+|.+.|++++++|+.+++.+|...+
T Consensus 235 p---~~~~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~lR~~~~~il~l~~lm~~~~ip~~~~~~----------- 300 (350)
T cd00896 235 P---KPFPPPMKLCKEMVEAMGGAQSEGYQEFKSYCCEAYNILRKSANLILNLFSLMVDANIPDIALDP----------- 300 (350)
T ss_pred C---CCCCCCeeccHHHHHHhCCCCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHHHcCCCCcccccCH-----------
Confidence 4 588899999999999999999999 999999999999999999999999999999998775321
Q ss_pred cccccCCCCCccccccchhHHHHHHHHhhccCCCCCCCccCHHHHHHHHHHHccChh--hhHhhCcccccCC
Q 001139 1074 DDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDPE--RFCLMFPGWGAWL 1143 (1143)
Q Consensus 1074 ~~~~~~~~~~~~~~~~~~~a~~~~~~v~~kl~g~~~~~~~sv~~~V~~LI~~Atd~~--nL~~m~~gW~pwl 1143 (1143)
..++..+++|+.-.... --....+..||++|.+.- ++.-+++.|+.||
T Consensus 301 --------------------~~~i~~l~~rf~l~~s~--~ea~~~~~~lI~~s~~~~~t~~~d~~h~~aq~~ 350 (350)
T cd00896 301 --------------------DKAILKVQEKFRLDLSD--EEAIKHFQNLINDSVNALFPVVVDRLHAWAQYW 350 (350)
T ss_pred --------------------HHHHHHHHHHhCCCCCH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 23567777777642111 124567899999998774 7888888888764
No 16
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=100.00 E-value=2.7e-54 Score=486.96 Aligned_cols=248 Identities=20% Similarity=0.348 Sum_probs=217.1
Q ss_pred ccccCCCCCCCcCCCCcCcccccc-ceEEEecCCCCceEEEEEcCC--CCeeeEEeecCCcchhhhHHHHHHHHHHHHHH
Q 001139 764 TATVPIDCTCQYNEGSFPYFKGLA-ESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFL 840 (1143)
Q Consensus 764 t~~lp~~~~~~~~~~~~~~i~~~~-~~~~v~~s~~~Pk~i~~~gsd--G~~y~~l~K~g~ddlR~D~r~~Ql~~~~N~ll 840 (1143)
...+|++|... +.++. ++++|++|+++|++|+|.++| |+.|.+|+|.| ||||||+++||++++||++|
T Consensus 48 ~~~lP~~p~~~--------~~~i~~~~~~v~~S~~~P~~l~f~~~d~~g~~~~~i~K~g-DDLRQD~l~~Qli~lm~~i~ 118 (353)
T cd05166 48 KCRLPLNPALD--------VKGIDVRECSYFNSNALPLKISFVNADPMGENISVIFKAG-DDLRQDMLVLQMINIMDKIW 118 (353)
T ss_pred CCccCCCCceE--------EEeEEcCceEEeccccCceEEEEEecCCCCCEEEEEEeCC-CcccHHHHHHHHHHHHHHHH
Confidence 45678777532 33332 688999999999999999999 99999999964 99999999999999999999
Q ss_pred hcCccccccceeeeeceEEEcCCCCceeEecCCCcchHHHhhhhccCCCCCCCCCCCcchhHHHHhhccchHhHHHHHHH
Q 001139 841 RNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQE 920 (1143)
Q Consensus 841 ~~~~et~~r~L~i~~y~Vipls~~~gliE~v~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~ 920 (1143)
+++. .+|.+++|.|+|+++++||||||+|+.|+++|..... ..+. |.
T Consensus 119 ~~~~----ldL~l~~Y~vip~~~~~GlIE~V~ns~tl~~I~~~~g----~~~~------------------------~~- 165 (353)
T cd05166 119 LQEG----LDLRMITFRCLSTGYDRGMVELVPDAETLRKIQVEEG----LTGS------------------------FK- 165 (353)
T ss_pred HhCC----CCceeEEEEEEEcCCCcceEEEeCCchhHHHHHHHhC----cccc------------------------cc-
Confidence 9875 7899999999999999999999999999999875321 1000 00
Q ss_pred HHHhhhhhHHHHHHHhcCCchHHHHHHHHHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhccccCCC-
Q 001139 921 VCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLK- 999 (1143)
Q Consensus 921 i~~~~~pvl~~~~~~~~~~~~~w~~~r~~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~~~~l~- 999 (1143)
.+.+++||.+.++++..|..+|.+|++|+|+|||+||||||||||++||||+ .+|+++|||||++|+.++...
T Consensus 166 -----~~~l~~~l~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLgigDRH~~NILl~-~~G~l~HIDFG~~lg~~~~~~~ 239 (353)
T cd05166 166 -----DRPIAKWLMKHNPSELEYEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLT-KSGHMFHIDFGKFLGHAQMFGG 239 (353)
T ss_pred -----chhHHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHHhhccccCCCceEEC-CCCCEEEEeeHHhccccccccc
Confidence 1247889999999999999999999999999999999999999999999999 599999999999999876432
Q ss_pred -CCCCCCccccHHHHhhhccc----ccccchHHHHHHHHHHHhhChHHHHHHHHHHccCCccccc
Q 001139 1000 -TPERVPFRLTRDIIDGMGVT----GVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1059 (1143)
Q Consensus 1000 -~pE~VPFRLT~~i~~~~g~~----g~eG~F~~~~~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~w~ 1059 (1143)
.||+||||||++|+++||.. +..|.|+..|+.++.+||+|.+.|++++++|+++++.+|.
T Consensus 240 ~~~E~~PFrLT~emv~~~ggg~~~s~~~~~F~~~c~~~~~~lRk~~~~il~ll~~ml~s~lp~~~ 304 (353)
T cd05166 240 FKRDRAPFVFTSDMAYVINGGDKPTQRFQDFVDLCCRAYNIIRKHANLLLNLLRMMACSGLPELS 304 (353)
T ss_pred CCCCCCCccccHHHHHHhcCCCCCcchHhHHHHHHHHHHHHHHcChHHHHHHHHHHhcCCCcccC
Confidence 58999999999999999854 3457999999999999999999999999999999999996
No 17
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=100.00 E-value=6.4e-53 Score=474.65 Aligned_cols=250 Identities=23% Similarity=0.363 Sum_probs=217.5
Q ss_pred ccccCCCCCCCcCCCCcCccccc-cceEEEecCCCCceEEEEEcCC-----CCeeeEEeecCCcchhhhHHHHHHHHHHH
Q 001139 764 TATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSD-----GHKYRQLAKSGNDDLRQDAVMEQFFGLVN 837 (1143)
Q Consensus 764 t~~lp~~~~~~~~~~~~~~i~~~-~~~~~v~~s~~~Pk~i~~~gsd-----G~~y~~l~K~g~ddlR~D~r~~Ql~~~~N 837 (1143)
...+|++|+. .+.++ .++++|++|+++|++|+|.++| |+.|.+|+|.| ||||||++++|+|++||
T Consensus 53 ~~~lPl~P~~--------~v~~i~~~~~~v~~Sk~~P~~l~f~~~d~~~~~g~~~~~IfK~g-DDLRQD~l~lQli~lm~ 123 (366)
T cd05165 53 SFQSPLNPSL--------KLGELRIEKCKVMDSKKKPLWLVFENADPTALSNENVGIIFKNG-DDLRQDMLTLQILRIMD 123 (366)
T ss_pred cCCCCCCCce--------eEeeeecCceEEehhhcCCcEEEEEccCcccccCCceeEEEecC-CcccHHHHHHHHHHHHH
Confidence 4567887753 23333 4578999999999999999998 68999999965 99999999999999999
Q ss_pred HHHhcCccccccceeeeeceEEEcCCCCceeEecCCCcchHHHhhhhccCCCCCCCCCCCcchhHHHHhhccchHhHHHH
Q 001139 838 TFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIA 917 (1143)
Q Consensus 838 ~ll~~~~et~~r~L~i~~y~Vipls~~~gliE~v~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 917 (1143)
.+|+++. .+|.+++|+|+|+++++|+||||+|+.|+++|........ . ..
T Consensus 124 ~i~~~~~----ldL~l~pY~vl~t~~~~GlIE~V~ns~tl~~I~~~~~~~~--~------------------------~~ 173 (366)
T cd05165 124 SIWKEEG----LDLRMLPYGCLSTGDKIGLIEVVRDSTTIANIQQETGGNA--T------------------------AA 173 (366)
T ss_pred HHHHhCC----CCceeEEEEEEEecCCceEEEEeCCchhHHHHHHhccccc--c------------------------cc
Confidence 9999875 7999999999999999999999999999999875321100 0 00
Q ss_pred HHHHHHhhhhhHHHHHHHhcCCchHHHHHHHHHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhccccC
Q 001139 918 FQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM 997 (1143)
Q Consensus 918 f~~i~~~~~pvl~~~~~~~~~~~~~w~~~r~~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~~~~ 997 (1143)
|. .+.+.+||.+.++++..|..++.+|++|+|+|||+||||||||||++||||+. ||++||||||++|+.++.
T Consensus 174 f~------~~~l~~wl~~~~~~~~~~~~a~~nF~~S~AgysvvtYiLGigDRH~~NILi~~-~G~l~HIDFG~ilg~~~~ 246 (366)
T cd05165 174 FK------KEALLHWLKEKNPTEEKLDAAIEEFTLSCAGYCVATFVLGIGDRHNDNIMVKE-TGQLFHIDFGHILGNYKS 246 (366)
T ss_pred cC------cHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcceEEcC-CCCEEEEehHHhhccCCc
Confidence 11 12477899998988899999999999999999999999999999999999995 999999999999998764
Q ss_pred -CC-CCCCCCccccHHHHhhhcccccc------cchHHHHHHHHHHHhhChHHHHHHHHHHccCCccccc
Q 001139 998 -LK-TPERVPFRLTRDIIDGMGVTGVE------GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1059 (1143)
Q Consensus 998 -l~-~pE~VPFRLT~~i~~~~g~~g~e------G~F~~~~~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~w~ 1059 (1143)
++ .||+||||||++|+++||+.|.+ |.|+.+|+.++.+||+|.+.|++++++|+..++.++.
T Consensus 247 ~~~i~~E~~PFkLT~emv~~mg~~~~~~~s~~f~~F~~~c~~a~~~LR~~~~~il~l~~lM~~s~ip~~~ 316 (366)
T cd05165 247 KFGINRERVPFVLTPDFVHVIGRGKKDNTSEHFQRFQDLCEKAYLALRRHGNLLIILFSMMLMSGLPELT 316 (366)
T ss_pred cCCCCCCCCCeeecHHHHHHhcccCCcCCChhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCcccC
Confidence 55 59999999999999999987766 8999999999999999999999999999999988775
No 18
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=6.6e-53 Score=472.55 Aligned_cols=248 Identities=20% Similarity=0.345 Sum_probs=217.1
Q ss_pred ccccCCCCCCCcCCCCcCcccccc-ceEEEecCCCCceEEEEEcCC--CCeeeEEeecCCcchhhhHHHHHHHHHHHHHH
Q 001139 764 TATVPIDCTCQYNEGSFPYFKGLA-ESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFL 840 (1143)
Q Consensus 764 t~~lp~~~~~~~~~~~~~~i~~~~-~~~~v~~s~~~Pk~i~~~gsd--G~~y~~l~K~g~ddlR~D~r~~Ql~~~~N~ll 840 (1143)
+..+|++|.. .|.++. ++++|++|+++|++|+|.++| |+.|.+|+|.| ||||||++++|++++||.+|
T Consensus 49 ~~~lPl~P~~--------~i~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~IfK~g-DDLRQD~l~lQli~lmd~i~ 119 (354)
T cd05177 49 SCCLPLNPAL--------RVKGIDADACSYFTSNAAPLKISFINANPLAKNISIIFKTG-DDLRQDMLVLQIVRVMDNIW 119 (354)
T ss_pred CCccCCCCCe--------EEEEEecCccEEehhhcCCCEEEEEecCCCCCeEEEEEeCC-CcccHHHHHHHHHHHHHHHH
Confidence 4568888753 455665 478999999999999999999 89999999975 99999999999999999999
Q ss_pred hcCccccccceeeeeceEEEcCCCCceeEecCCCcchHHHhhhhccCCCCCCCCCCCcchhHHHHhhccchHhHHHHHHH
Q 001139 841 RNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQE 920 (1143)
Q Consensus 841 ~~~~et~~r~L~i~~y~Vipls~~~gliE~v~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~ 920 (1143)
+++. .+|+++||+|+|+++++|+||||+|+.|+++|....... .. +.
T Consensus 120 ~~~~----ldl~l~pY~vl~t~~~~GlIE~V~ns~tl~~I~~~~~~~----~~--------------~~----------- 166 (354)
T cd05177 120 LQEG----LDMQMIIYRCLSTGKTQGLVQMVPDAVTLAKIHRESGLI----GP--------------LK----------- 166 (354)
T ss_pred HHcC----CCceEEEEEEEecCCCceEEEEeCChHhHHHHHHhhCCC----cc--------------cc-----------
Confidence 9875 899999999999999999999999999999997532100 00 00
Q ss_pred HHHhhhhhHHHHHHHhcCCchHHHHHHHHHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhccccCCC-
Q 001139 921 VCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLK- 999 (1143)
Q Consensus 921 i~~~~~pvl~~~~~~~~~~~~~w~~~r~~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~~~~l~- 999 (1143)
.+.+.+||...++++.+|..++.+|++|+|+|||+||||||||||++||||+ .||+++|||||++|+.++.+.
T Consensus 167 -----~~~l~~~~~~~~~~~~~~~~a~~nF~~S~AgysvvtYiLGigDRHn~NILi~-~~G~~~HIDFG~ilg~~~~~~~ 240 (354)
T cd05177 167 -----ENTIEKWFHMHNKLKEDYDKAVRNFFHSCAGWCVVTFILGVCDRHNDNIMLT-HSGHMFHIDFGKFLGHAQTFGS 240 (354)
T ss_pred -----hhhHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCceeEc-CCCCEEEEehHHhcCCCccccC
Confidence 1236788888899999999999999999999999999999999999999999 599999999999999987643
Q ss_pred -CCCCCCccccHHHHhhhcccccc----cchHHHHHHHHHHHhhChHHHHHHHHHHccCCccccc
Q 001139 1000 -TPERVPFRLTRDIIDGMGVTGVE----GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1059 (1143)
Q Consensus 1000 -~pE~VPFRLT~~i~~~~g~~g~e----G~F~~~~~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~w~ 1059 (1143)
.||+||||||++|+++||..|.+ +.|+..|+.++.+||+|.+.|++++++|+++++.+|.
T Consensus 241 ~~~E~~PF~LT~emv~~~~~GG~~s~~f~~F~~~c~~a~~~lR~~~~~il~l~~lm~~s~iP~~~ 305 (354)
T cd05177 241 IKRDRAPFIFTSEMEYFITEGGKKPQRFQRFVELCCRAYNIVRKHSQLLLNLLEMMLHAGLPELK 305 (354)
T ss_pred CCcCCCCeeccHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccC
Confidence 58999999999999877665654 3699999999999999999999999999999999986
No 19
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=100.00 E-value=2e-53 Score=468.21 Aligned_cols=267 Identities=22% Similarity=0.339 Sum_probs=226.8
Q ss_pred CCCceEEEEEcCCCC--eeeEEeecCCcchhhhHHHHHHHHHHHHHHhcCccccccceeeeeceEEEcCCCCceeEecCC
Q 001139 796 INAPKVVECFGSDGH--KYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDG 873 (1143)
Q Consensus 796 ~~~Pk~i~~~gsdG~--~y~~l~K~g~ddlR~D~r~~Ql~~~~N~ll~~~~et~~r~L~i~~y~Vipls~~~gliE~v~~ 873 (1143)
++|||+.+..|+.+. .+.||+|. +||||||+++||+|++||.+|+++. ++|.++||+|+|+++++||||||+|
T Consensus 15 ~~r~r~~s~~~~~~~~~~~~~i~K~-gDDLRqD~l~~Ql~~~~~~i~~~~~----l~l~l~~Y~vip~~~~~GlIE~V~n 89 (293)
T cd05168 15 KERIRKSSPYGHLKSWDLRSVIVKT-GDDLRQELLAMQLIQQFDRIFKEEG----LPLWLRPYEILVTSSNSGLIETIPD 89 (293)
T ss_pred HHHhhhcCccCcCCCCCEEEEEEeC-CCCccHHHHHHHHHHHHHHHHHHCC----CCceeeeEEEEEccCCceeEEEeCC
Confidence 468888888888765 79999995 5999999999999999999999864 8999999999999999999999999
Q ss_pred CcchHHHhhhhccCCCCCCCCCCCcchhHHHHhhccchHhHHHHHHHHHHhhhhhHHHHHHHhcCCc-hHHHHHHHHHHH
Q 001139 874 TVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQP-AYWFEKRLAYTR 952 (1143)
Q Consensus 874 ~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~~~~~-~~w~~~r~~f~~ 952 (1143)
+.|+++|...... ..|.+++||.+.|++| ..|+.+|.+|++
T Consensus 90 s~tl~~i~k~~~~--------------------------------------~~~~l~~~f~~~~~~~~~~~~~a~~nF~~ 131 (293)
T cd05168 90 TVSIDSLKKKLTS--------------------------------------KFKSLLDFFKKTFGDPSERFREAQKNFIE 131 (293)
T ss_pred chhHHHHHHHhcc--------------------------------------CCchHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 9999998653210 1346888999999875 589999999999
Q ss_pred hhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhccccCCCCCCCCCccccHHHHhhhcccccc--cchHHHHH
Q 001139 953 SVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVE--GVFRRCCE 1030 (1143)
Q Consensus 953 S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~~~~l~~pE~VPFRLT~~i~~~~g~~g~e--G~F~~~~~ 1030 (1143)
|+|+|||+||||||||||++||||+. +|++||||||++|+.++....||+||||||++|+++||+.|.+ |.|+.+|+
T Consensus 132 S~A~ySvv~YvLGigDRH~~NILi~~-~G~liHIDFG~~fg~~~~~~~~E~vPFrLT~~mv~~mGg~~s~~~~~F~~~c~ 210 (293)
T cd05168 132 SLAGYSLICYLLQIKDRHNGNILIDN-DGHIIHIDFGFMLSNSPGNVGFETAPFKLTQEYIEVMGGVNSDLFNYFKKLFL 210 (293)
T ss_pred HHHHHHHHHHHhhccccCCCceEEcC-CCCEEEEehHHhhcccccCCCCCCCCEEecHHHHHHhCCCCCchhHHHHHHHH
Confidence 99999999999999999999999997 9999999999999999887789999999999999999999987 89999999
Q ss_pred HHHHHHhhChHHHHHHHHHHccCC-ccccccChhHHHhhhhhcccccccCCCCCccccccchhHHHHHHHHhhccCCCCC
Q 001139 1031 KTLSVMRTNKEALLTIVEVFIHDP-LYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYEG 1109 (1143)
Q Consensus 1031 ~~~~~Lr~~~~~l~~~L~~f~~Dp-l~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~kl~g~~~ 1109 (1143)
.++.+||++++.|++++++|+++| +..... ....+..+++|+....
T Consensus 211 ~~~~~LR~~~~~il~ll~~m~~~~~lp~f~~--------------------------------~~~~i~~l~~r~~l~~- 257 (293)
T cd05168 211 KGFMALRKHVDRIILLVEIMQSDSKLPCFKA--------------------------------GEFTIQQLRDRFMLNL- 257 (293)
T ss_pred HHHHHHHhchHHHHHHHHHHccCCCCccccC--------------------------------chHHHHHHHHHhCCCC-
Confidence 999999999999999999999995 332210 1123566667665421
Q ss_pred CCccCHHHHHHHHHHHccChhhhHhhCccccc
Q 001139 1110 GEMRSVHGQVQQLIQDAIDPERFCLMFPGWGA 1141 (1143)
Q Consensus 1110 ~~~~sv~~~V~~LI~~Atd~~nL~~m~~gW~p 1141 (1143)
....+..++..||++|.+. .-.++|-.|+-
T Consensus 258 -se~~a~~~~~~lI~~s~~~-~~t~~yD~~q~ 287 (293)
T cd05168 258 -TEEQLEVFVDELINQSLDN-WRTRLYDKFQY 287 (293)
T ss_pred -CHHHHHHHHHHHHHHHHhc-hhHHHHHHHHH
Confidence 1233678999999999874 56666666653
No 20
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=100.00 E-value=5.6e-53 Score=448.70 Aligned_cols=198 Identities=39% Similarity=0.692 Sum_probs=190.0
Q ss_pred eEEeecCCcchhhhHHHHHHHHHHHHHHhcCccccccceeeeeceEEEcCCCCceeEecCCCcchHHHhhhhccCCCCCC
Q 001139 813 RQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHG 892 (1143)
Q Consensus 813 ~~l~K~g~ddlR~D~r~~Ql~~~~N~ll~~~~et~~r~L~i~~y~Vipls~~~gliE~v~~~~~l~~il~~~~~~~~~~~ 892 (1143)
.|++|. .||+|||+|++|+|+++|.+|++++|+++|+|.++||.|+|+++++||||||+|+.|++++
T Consensus 1 ~~~~K~-~dDlR~D~~~~ql~~~~n~il~~~~e~~~~~l~~~~y~vip~~~~~GlIE~v~~~~sl~~i------------ 67 (202)
T smart00146 1 AVIFKG-GDDLRQDERVLQLLRLMNKILQKDGETRRRDLHLRPYKVIPTGPKSGLIEVVPNSTTLHQI------------ 67 (202)
T ss_pred CeeecC-CCcccHHHHHHHHHHHHHHHHHhCcccccCceEeeeeEEEEcCCCcceEEEcCCchhHHHH------------
Confidence 378995 5999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCCcchhHHHHhhccchHhHHHHHHHHHHhhhhhHHHHHHHhcCCchHHHHHHHHHHHhhhhHHHHHHhhccCCCCCC
Q 001139 893 RYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAM 972 (1143)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~~~~~~~w~~~r~~f~~S~A~~Si~~yilglgDRh~~ 972 (1143)
+++||.+.|++|.+|+.+|++|++|+|++|++|||||||||||+
T Consensus 68 ------------------------------------l~~~~~~~~~~~~~~~~~~~~F~~SlA~~s~~~YilglgDRh~~ 111 (202)
T smart00146 68 ------------------------------------LYDWFKKKFPDPEDYFEARKNFTRSCAGYSVITYILGLGDRHND 111 (202)
T ss_pred ------------------------------------HHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 56788999999999999999999999999999999999999999
Q ss_pred ceEEecCCCeEEEeecchhhccccCCCCC-CCCCccccHHHHhhhcccccccchHHHHHHHHHHHhhChHHHHHHHHHHc
Q 001139 973 NILIDQATAEVVHIDLGVAFEQGLMLKTP-ERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFI 1051 (1143)
Q Consensus 973 NIll~~~tG~v~hiDfg~~f~~~~~l~~p-E~VPFRLT~~i~~~~g~~g~eG~F~~~~~~~~~~Lr~~~~~l~~~L~~f~ 1051 (1143)
||||+ +||+++|||||++|++++.+..| |.|||||||||+++||+.|++|.|+..|+.++++||++++.|+++|++|+
T Consensus 112 NIli~-~~G~v~hIDfg~~~~~~~~~~~~~e~vPFRLT~~~~~~lg~~~~~g~F~~~~~~~~~~Lr~~~~~i~~~l~~~~ 190 (202)
T smart00146 112 NIMLD-KTGHLFHIDFGFILGNGPKLFGFPERVPFRLTPEMVDVMGDSGYFGLFRSLCERALRALRKNSNLIMSLLELML 190 (202)
T ss_pred cEEEe-CCCCEEEEechhhhCccccCCCCCCCCCeecCHHHHHHhCCCcccchHHHHHHHHHHHHHcCHHHHHHHHHHHc
Confidence 99999 79999999999999999876555 99999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccc
Q 001139 1052 HDPLYKWAL 1060 (1143)
Q Consensus 1052 ~Dpl~~w~~ 1060 (1143)
+||+.+|..
T Consensus 191 ~d~l~~~~~ 199 (202)
T smart00146 191 YDGLPDWRS 199 (202)
T ss_pred CCCChhhcC
Confidence 999999974
No 21
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=1.7e-50 Score=453.06 Aligned_cols=249 Identities=24% Similarity=0.382 Sum_probs=215.0
Q ss_pred cccccCCCCCCCcCCCCcCccccc-cceEEEecCCCCceEEEEEcCCC-----CeeeEEeecCCcchhhhHHHHHHHHHH
Q 001139 763 VTATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSDG-----HKYRQLAKSGNDDLRQDAVMEQFFGLV 836 (1143)
Q Consensus 763 ~t~~lp~~~~~~~~~~~~~~i~~~-~~~~~v~~s~~~Pk~i~~~gsdG-----~~y~~l~K~g~ddlR~D~r~~Ql~~~~ 836 (1143)
....+|++|+.. +.++ .++++|+.|+++|.+++|.+.|| ..|.+|+|.| ||||||++++|++++|
T Consensus 53 ~~~~lPl~P~~~--------~~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~~~~IfK~G-DDLRQD~l~lQli~lm 123 (365)
T cd00894 53 ESFRVPYDPGLR--------AGALVIEKCKVMASKKKPLWLEFKCADPTALSNETIGIIFKHG-DDLRQDMLILQILRIM 123 (365)
T ss_pred CCCCCCCCCceE--------EEEEEcCceEEEcccCCceEEEEECCCCCccCCCceeEEEeCC-CcccHHHHHHHHHHHH
Confidence 356788887532 2333 57889999999999999999886 5799999975 9999999999999999
Q ss_pred HHHHhcCccccccceeeeeceEEEcCCCCceeEecCCCcchHHHhhhhccCCCCCCCCCCCcchhHHHHhhccchHhHHH
Q 001139 837 NTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRI 916 (1143)
Q Consensus 837 N~ll~~~~et~~r~L~i~~y~Vipls~~~gliE~v~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 916 (1143)
|.+|+.+. ++|++++|+|+|+++++|+||||+|+.|+++|..... +..+.
T Consensus 124 d~i~~~~~----ldL~l~pY~vi~tg~~~GlIE~V~ns~tl~~I~~~~~---~~~~~----------------------- 173 (365)
T cd00894 124 ESIWETES----LDLCLLPYGCISTGDKIGMIEIVKDATTIAKIQQSTV---GNTGA----------------------- 173 (365)
T ss_pred HHHHHHcC----CCeEEEEEEEEEecCCceEEEEcCCchhHHHHHHhcc---ccccc-----------------------
Confidence 99998765 8999999999999999999999999999999875311 11000
Q ss_pred HHHHHHHhhhhhHHHHHHHhcCCchHHHHHHHHHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhcccc
Q 001139 917 AFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL 996 (1143)
Q Consensus 917 ~f~~i~~~~~pvl~~~~~~~~~~~~~w~~~r~~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~~~ 996 (1143)
|. .+.+.+||.+.++++..|..++.+|++|+|+||++||||||||||++||||+ .+|++||||||++|+.++
T Consensus 174 -~k------~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsV~tYiLGIgDRHndNImi~-~~G~lfHIDFG~ilg~~~ 245 (365)
T cd00894 174 -FK------DEVLSHWLKEKCPIEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMIT-ETGNLFHIDFGHILGNYK 245 (365)
T ss_pred -cc------chhHHHHHHHhCCCHHHHHHHHHHHHHHhHHHHHHHHhccccCccccceeEc-CCCCEEEEeeHHhhCCCC
Confidence 00 1247889999999999999999999999999999999999999999999999 599999999999999887
Q ss_pred CC-C-CCCCCCccccHHHHhhhcccccc-----cchHHHHHHHHHHHhhChHHHHHHHHHHccCCcccc
Q 001139 997 ML-K-TPERVPFRLTRDIIDGMGVTGVE-----GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKW 1058 (1143)
Q Consensus 997 ~l-~-~pE~VPFRLT~~i~~~~g~~g~e-----G~F~~~~~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~w 1058 (1143)
.+ . .||+||||||++|+++||+.|.+ +.|+..|+.++.+||++.+.|++++++++...+.+.
T Consensus 246 ~~~gi~~E~~PFkLT~e~v~vmg~~gg~~s~~f~~F~~~c~~a~~~LRk~~~lil~L~~lM~~sgip~l 314 (365)
T cd00894 246 SFLGINKERVPFVLTPDFLFVMGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLIILFSMMLMTGMPQL 314 (365)
T ss_pred ccCCCCCCCCCeeecHHHHHHhCccCCcCChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccc
Confidence 53 3 59999999999999999987665 479999999999999999999999999987666543
No 22
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=4.4e-50 Score=447.08 Aligned_cols=286 Identities=18% Similarity=0.296 Sum_probs=225.0
Q ss_pred HHHHHHHHHhhhhhcccccccccccchhhhhhcccccccccccccCCCCCCCcCCCCcCcccc-ccceEEEecCCCCceE
Q 001139 723 QMVDVYIKLAELETRREDTNKRIQLPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKG-LAESVMVMNGINAPKV 801 (1143)
Q Consensus 723 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~l~~l~~~p~~t~~lp~~~~~~~~~~~~~~i~~-~~~~~~v~~s~~~Pk~ 801 (1143)
.+++.+.+++..........++..+.+.+..++.. +..++..+|++|.... .+ ..+.++|++|+++|++
T Consensus 9 ~~~~~L~~i~~~vk~~~~~~~~~~l~~~~~~l~~~--~~~~~~~lPl~p~~~~--------~~~~~~~c~v~~S~~~Pl~ 78 (353)
T cd05176 9 RLVQLLGAVAEKVRQASSSTRQVVLQEGMERVQSF--FQKNKCRLPLSPSLVA--------KELNIKVCSFFSSNAVPLK 78 (353)
T ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHhh--cCCCCCCCCCCcceeE--------ccEehheeEEecccCCceE
Confidence 34555555554322111112222233444444442 2223467888885322 22 2356899999999999
Q ss_pred EEEEcCC--CCeeeEEeecCCcchhhhHHHHHHHHHHHHHHhcCccccccceeeeeceEEEcCCCCceeEecCCCcchHH
Q 001139 802 VECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGD 879 (1143)
Q Consensus 802 i~~~gsd--G~~y~~l~K~g~ddlR~D~r~~Ql~~~~N~ll~~~~et~~r~L~i~~y~Vipls~~~gliE~v~~~~~l~~ 879 (1143)
++|.++| |+.|.+|+|.| ||||||++++|++++||++|+++. .+|++++|+|+|+++++|+||||||+.|+++
T Consensus 79 l~f~~~d~~g~~~~~ifK~g-DDLRQD~l~lQli~lmd~i~~~~~----ldL~l~pY~vl~tg~~~GlIE~V~ns~tl~~ 153 (353)
T cd05176 79 IALVNADPLGEEINVMFKVG-EDLRQDMLALQMIKIMDKIWLQEG----LDLRMVIFKCLSTGKDRGMVELVPASETLRK 153 (353)
T ss_pred EEEEccCCCCCEEEEEEeCC-CCccHHHHHHHHHHHHHHHHHHCC----CCeEEEEEEEEEcCCCceEEEEeCCcHhHHH
Confidence 9999999 99999999975 999999999999999999999875 7899999999999999999999999999999
Q ss_pred HhhhhccCCCCCCCCCCCcchhHHHHhhccchHhHHHHHHHHHHhhhhhHHHHHHHhcCCchHHHHHHHHHHHhhhhHHH
Q 001139 880 YLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSM 959 (1143)
Q Consensus 880 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~~~~~~~w~~~r~~f~~S~A~~Si 959 (1143)
|..... ..+.+ . ...+.+|+....|++..|..+|.||++|+|+|||
T Consensus 154 I~~~~~----~~~~~--------------~----------------~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsv 199 (353)
T cd05176 154 IQVEYG----VTGSF--------------K----------------DKPLAEWLRKYNPAEEEYEKASENFIYSCAGCCV 199 (353)
T ss_pred HHHHhC----cCCcc--------------c----------------cchHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence 875321 10000 0 0125677777788889999999999999999999
Q ss_pred HHHhhccCCCCCCceEEecCCCeEEEeecchhhccccCC--CCCCCCCccccHHHHhhhccccc----ccchHHHHHHHH
Q 001139 960 VGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML--KTPERVPFRLTRDIIDGMGVTGV----EGVFRRCCEKTL 1033 (1143)
Q Consensus 960 ~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~~~~l--~~pE~VPFRLT~~i~~~~g~~g~----eG~F~~~~~~~~ 1033 (1143)
+||||||||||++||||+ .+|+++|||||++|+.++.+ ..||+||||||++|+++||+.+. ...|+..|+.++
T Consensus 200 ~tYiLGIgDRHn~NILi~-~~Ghl~HIDFG~ilg~~~~~g~~~~e~~PFkLT~emv~~mgG~~~~s~~f~~F~~lc~~af 278 (353)
T cd05176 200 ATYVLGICDRHNDNIMLR-STGHMFHIDFGKFLGHAQMFGSFKRDRAPFVLTSDMAYVINGGEKPTIRFQLFVDLCCQAY 278 (353)
T ss_pred HhhhccccCcCCcceEEc-CCCCEEEEeeHHhcCCCccccCCCCCCCCeeecHHHHHHhcCCCCcchhHHHHHHHHHHHH
Confidence 999999999999999999 59999999999999988753 35899999999999999985332 135999999999
Q ss_pred HHHhhChHHHHHHHHHHccCCcccc
Q 001139 1034 SVMRTNKEALLTIVEVFIHDPLYKW 1058 (1143)
Q Consensus 1034 ~~Lr~~~~~l~~~L~~f~~Dpl~~w 1058 (1143)
.+||+|.+.|++++++++...+.+.
T Consensus 279 ~~LRk~~~~il~L~~lM~~s~iP~~ 303 (353)
T cd05176 279 NLIRKHSNLFLNLLSLMTQSGLPEL 303 (353)
T ss_pred HHHHHhHHHHHHHHHHHhCCCCccc
Confidence 9999999999999999987777654
No 23
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=100.00 E-value=5.5e-51 Score=448.10 Aligned_cols=222 Identities=23% Similarity=0.378 Sum_probs=196.0
Q ss_pred EEecCCC-CceEEEEEcCCC--CeeeEEeecCCcchhhhHHHHHHHHHHHHHHhcCccccccceeeeeceEEEcCCCCce
Q 001139 791 MVMNGIN-APKVVECFGSDG--HKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGI 867 (1143)
Q Consensus 791 ~v~~s~~-~Pk~i~~~gsdG--~~y~~l~K~g~ddlR~D~r~~Ql~~~~N~ll~~~~et~~r~L~i~~y~Vipls~~~gl 867 (1143)
+++++.. .|-.+.+.-.|| ..+.+|+|. +||||||+++||+|++||.+|+++. ++|.++||+|||+|+++||
T Consensus 9 k~~~~~~~~P~~~~~~~~~~~~~~~~~i~K~-gDDLRqD~l~~Ql~~l~~~i~~~~~----l~l~l~~Y~vi~~s~~~Gl 83 (289)
T cd00893 9 KILQSALKIPYLELKKLTDSTLINSEFIVKC-GDDLRQDILATQIITELQKIFELMF----LDLWLNPYLVLPVSKTGGI 83 (289)
T ss_pred hHHHHhhcCchhhccCccCCCCeeEEEEEEC-CCcccHHHHHHHHHHHHHHHHHHcC----CCceeEEEEEEECCCCcee
Confidence 4555553 576666655554 589999995 5999999999999999999999874 8999999999999999999
Q ss_pred eEecCCCcchHHHhhhhccCCCCCCCCCCCcchhHHHHhhccchHhHHHHHHHHHHhhhhhHHHHHHHhcC--CchHHHH
Q 001139 868 LEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFL--QPAYWFE 945 (1143)
Q Consensus 868 iE~v~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~~~--~~~~w~~ 945 (1143)
||||+|+.|++++.... .+.+.+||.+.|. ++..|+.
T Consensus 84 IE~V~ns~tl~~i~~~~-----------------------------------------~~~l~~~~~~~~~~~~~~~~~~ 122 (289)
T cd00893 84 IEFIPNSISIHEIKKQQ-----------------------------------------INSLYDYFLELYGSYTTEAFLQ 122 (289)
T ss_pred EEEeCCchhHHHHHHhc-----------------------------------------cccHHHHHHHHcCCCCcHHHHH
Confidence 99999999999986421 0125567778887 4678999
Q ss_pred HHHHHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhccccCC-CCCCCCCccccHHHHhhhcccccc--
Q 001139 946 KRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML-KTPERVPFRLTRDIIDGMGVTGVE-- 1022 (1143)
Q Consensus 946 ~r~~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~~~~l-~~pE~VPFRLT~~i~~~~g~~g~e-- 1022 (1143)
+|.+|++|+|+|||+||||||||||++|||||. +|+++|||||++|+.++.. ..||+||||||++|+++||+.|.+
T Consensus 123 a~~nF~~SlA~ySvv~YiLgigDRH~~NILid~-~G~liHIDFG~ilg~~p~~~~~~E~~PFrLT~emv~~mGg~~s~~f 201 (289)
T cd00893 123 ARYNFIESMAGYSLLCYLLQIKDRHNGNILLDS-DGHIIHIDFGFILDSSPGNNLGFEPAAFKFTKEMVDFMGGKKSDDF 201 (289)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCceEECC-CCCEEEEehHHhhCcCCcCCCCCCCCCeeecHHHHHHhCCCCChhH
Confidence 999999999999999999999999999999996 9999999999999998654 567999999999999999999987
Q ss_pred cchHHHHHHHHHHHhhChHHHHHHHHHHccCCccccc
Q 001139 1023 GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1059 (1143)
Q Consensus 1023 G~F~~~~~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~w~ 1059 (1143)
|.|+.+|+.++.+||+|.+.|++++++|+++|+.+|.
T Consensus 202 ~~F~~~c~~~~~~lR~~~~~il~ll~~m~~~~lp~~~ 238 (289)
T cd00893 202 KKFRYLCLRGFIAVRKHMDLVISLVYLLIFSGLPCFR 238 (289)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHccCCCcccC
Confidence 7899999999999999999999999999999999885
No 24
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=1.2e-50 Score=453.74 Aligned_cols=249 Identities=21% Similarity=0.321 Sum_probs=208.1
Q ss_pred cccCCCCCCCcCCCCcCccccccceEEEecCCCCceEEEEEcCC--CCeeeEEeecCCcchhhhHHHHHHHHHHHHHHhc
Q 001139 765 ATVPIDCTCQYNEGSFPYFKGLAESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRN 842 (1143)
Q Consensus 765 ~~lp~~~~~~~~~~~~~~i~~~~~~~~v~~s~~~Pk~i~~~gsd--G~~y~~l~K~g~ddlR~D~r~~Ql~~~~N~ll~~ 842 (1143)
..+|++|+.. ...-+.++++|++|+++|++|+|.+.| |..|.+|+|. +||||||++++|++++||.+|++
T Consensus 53 ~~lPl~p~~~-------~~~~~~~~~~v~~Sk~~Pl~l~f~~~~~~g~~~~~IfK~-gDDLRQD~l~~Qli~lmd~i~k~ 124 (361)
T cd05174 53 LQSPLSPSII-------LCEVCVDQCTFMDSKMKPLWIMYKNEEAGGGSVGIIFKN-GDDLRQDMLTLQMIQLMDVLWKQ 124 (361)
T ss_pred CCCCCCCceE-------EEEEEcCcEEEEeccCCceEEEEeecCCCCCEEEEEEeC-CCchhHHHHHHHHHHHHHHHHHH
Confidence 4578877532 233356899999999999999999976 9999999996 49999999999999999999998
Q ss_pred CccccccceeeeeceEEEcCCCCceeEecCCCcchHHHhhhhccCCCCCCCCCCCcchhHHHHhhccchHhHHHHHHHHH
Q 001139 843 HRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVC 922 (1143)
Q Consensus 843 ~~et~~r~L~i~~y~Vipls~~~gliE~v~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~ 922 (1143)
+. ++|.+++|+|+|+++++||||||+|+.|+++|....... +. ...|+
T Consensus 125 ~~----ldL~l~pY~vi~tg~~~GlIE~V~ns~Tl~~I~~~~~~~-~~------------------------~~~f~--- 172 (361)
T cd05174 125 EG----LDLRMTPYGCLSTGDKTGLIEVVKNSDTIANIQLNKSNM-AA------------------------TAAFN--- 172 (361)
T ss_pred CC----CCeeeEEEEEEEecCCceEEEEeCCchhHHHHHHhhccc-ch------------------------hcccc---
Confidence 75 899999999999999999999999999999987531100 00 01111
Q ss_pred HhhhhhHHHHHHHhcCCchHHHHHHHHHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhcccc--CCCC
Q 001139 923 ENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL--MLKT 1000 (1143)
Q Consensus 923 ~~~~pvl~~~~~~~~~~~~~w~~~r~~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~~~--~l~~ 1000 (1143)
.+.+.+||...+++ +.|..++.+|++|+|+|||+||||||||||++||||+. +|++||||||++|+..+ ....
T Consensus 173 ---~~~l~~~l~~~~~~-~~~~~A~~nF~~S~AgysVvtYiLGIGDRHn~NILi~~-~G~l~HIDFG~ilg~~~~~~~~~ 247 (361)
T cd05174 173 ---KDALLNWLKSKNPG-DALDQAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIRE-SGQLFHIDFGHFLGNFKTKFGIN 247 (361)
T ss_pred ---chHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHHHHHHHhcccCcCccceeEcC-CCCEEEEehHHhhcCCcccCCCC
Confidence 13467888887765 35567799999999999999999999999999999995 99999999999999754 3457
Q ss_pred CCCCCccccHHHHhhhccccc-----ccchHHHHHHHHHHHhhChHHHHHHHHHHccCCcccc
Q 001139 1001 PERVPFRLTRDIIDGMGVTGV-----EGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKW 1058 (1143)
Q Consensus 1001 pE~VPFRLT~~i~~~~g~~g~-----eG~F~~~~~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~w 1058 (1143)
||+||||||++|+++||..|. .|.|+.+|+.++.+||+|.+.|++++++|+...+.+.
T Consensus 248 ~E~vPFkLT~e~v~vmg~G~~~~s~~f~~F~~~c~~a~~~LRk~~~~il~l~~lM~~sgip~~ 310 (361)
T cd05174 248 RERVPFILTYDFVHVIQQGKTNNSEKFERFRGYCEQAYKILRRHGTLFLHLFALMKAAGLPEL 310 (361)
T ss_pred CCCCCeeccHHHHHHHccCCCCCCchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCcc
Confidence 999999999999999974322 2699999999999999999999999999987666553
No 25
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=100.00 E-value=4.5e-50 Score=451.00 Aligned_cols=249 Identities=26% Similarity=0.387 Sum_probs=207.8
Q ss_pred cccCCCCCCCcCCCCcCccccc-cceEEEecCCCCceEEEEEcC--CCCeeeEEeecCCcchhhhHHHHHHHHHHHHHHh
Q 001139 765 ATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGS--DGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLR 841 (1143)
Q Consensus 765 ~~lp~~~~~~~~~~~~~~i~~~-~~~~~v~~s~~~Pk~i~~~gs--dG~~y~~l~K~g~ddlR~D~r~~Ql~~~~N~ll~ 841 (1143)
..+|++|+. .+.++ .++++|++|+++|++|+|.+. +|..|.+|+|.| ||||||++++|++++||++|+
T Consensus 53 ~~lPldP~~--------~v~~i~~~~~~v~~S~~~Pl~l~f~~~~~~g~~~~~IfK~g-DDLRQD~l~lQli~lm~~i~k 123 (362)
T cd05173 53 LQSPLNPSI--------ILSELNVEKCKYMDSKMKPLWIVYNNKLFGGDSLGIIFKNG-DDLRQDMLTLQILRLMDTLWK 123 (362)
T ss_pred CCCCCCCce--------EEEEEEcCceEEecccCCCeEEEEeecCCCCCEEEEEEeCC-CchhHHHHHHHHHHHHHHHHH
Confidence 457777753 33443 456899999999999999764 799999999965 999999999999999999999
Q ss_pred cCccccccceeeeeceEEEcCCCCceeEecCCCcchHHHhhhhccCCCCCCCCCCCcchhHHHHhhccchHhHHHHHHHH
Q 001139 842 NHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEV 921 (1143)
Q Consensus 842 ~~~et~~r~L~i~~y~Vipls~~~gliE~v~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i 921 (1143)
++. ++|.+++|+|+|+|+++||||||+|+.|+++|....... +. ...|.
T Consensus 124 ~~~----ldL~l~pY~vi~t~~~~GlIE~V~ns~tl~~I~~~~~~~-~~------------------------~~~f~-- 172 (362)
T cd05173 124 EAG----LDLRIVPYGCLATGDRSGLIEVVSSAETIADIQLNSSNV-AA------------------------AAAFN-- 172 (362)
T ss_pred HCC----CCeeeEEEEEEEccCCceEEEEeCCchhHHHHHHhcccc-ch------------------------hcccC--
Confidence 874 899999999999999999999999999999987432100 00 00111
Q ss_pred HHhhhhhHHHHHHHhcCCchHHHHHHHHHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhcccc--CCC
Q 001139 922 CENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL--MLK 999 (1143)
Q Consensus 922 ~~~~~pvl~~~~~~~~~~~~~w~~~r~~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~~~--~l~ 999 (1143)
.+.+.+||.+.+ .+..|..++.+|++|+|+|||+||||||||||++||||+ .+|++||||||++|+..+ ...
T Consensus 173 ----~~~l~~~l~~~~-~~~~~~~a~~nF~~S~AgYsvvtYILGIGDRHn~NILi~-~~G~l~HIDFG~ilg~~~~~~~~ 246 (362)
T cd05173 173 ----KDALLNWLKEYN-SGDDLERAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVR-KNGQLFHIDFGHILGNFKSKFGI 246 (362)
T ss_pred ----hhHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEEC-CCCCEEEEehHHhhccCCcccCC
Confidence 124677776643 345677789999999999999999999999999999999 599999999999999743 345
Q ss_pred CCCCCCccccHHHHhhhc--ccc---cccchHHHHHHHHHHHhhChHHHHHHHHHHccCCccccc
Q 001139 1000 TPERVPFRLTRDIIDGMG--VTG---VEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1059 (1143)
Q Consensus 1000 ~pE~VPFRLT~~i~~~~g--~~g---~eG~F~~~~~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~w~ 1059 (1143)
.||+||||||++|+++|| ..| .+|.|+.+|+.++.+||+|.+.|++++++|+..++.++.
T Consensus 247 ~~E~vPFkLT~emv~vm~~G~~g~s~~~~~F~~~c~~a~~~LRk~~~lil~l~~lM~~s~ip~~~ 311 (362)
T cd05173 247 KRERVPFILTYDFIHVIQQGKTGNTEKFGRFRQYCEDAYLILRKNGNLFITLFALMLTAGLPELT 311 (362)
T ss_pred CCCCCCeeecHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccc
Confidence 799999999999999995 333 468999999999999999999999999999999988764
No 26
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=100.00 E-value=3.1e-50 Score=440.96 Aligned_cols=229 Identities=43% Similarity=0.784 Sum_probs=177.3
Q ss_pred eeeEEeecCCcchhhhHHHHHHHHHHHHHHhcCccccccceeeeeceEEEcCCCCceeEecCCCcchHHHhhhhccCCCC
Q 001139 811 KYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGA 890 (1143)
Q Consensus 811 ~y~~l~K~g~ddlR~D~r~~Ql~~~~N~ll~~~~et~~r~L~i~~y~Vipls~~~gliE~v~~~~~l~~il~~~~~~~~~ 890 (1143)
.|+||+|+ +||+|||+|+||+|+++|.+|.+++++++ +++|.|+|+++++||||||+++.||.+++.......+.
T Consensus 1 ~y~~l~K~-~dDlr~D~~~~ql~~~~n~~l~~~~~~~~----~~~Y~vipls~~~Glie~v~~~~tl~~i~~~~~~~~~~ 75 (235)
T PF00454_consen 1 EYSFLVKG-GDDLRQDERVMQLFRLMNRILKKEGETRE----IRTYRVIPLSPNCGLIEWVPNTITLQEIYKTYCVRIGH 75 (235)
T ss_dssp -EEEEEEE-SS-CHHHHHHHHHHHHHHHHHHHTT-------------EEEEETTEEEEE--TTEEEHHHHHHHSTTSSTT
T ss_pred CceEEEEC-CchhhchhHHHHHHHHHHHHHhcCCCCce----EEEeEEEecCCCCceeEEeccccchhHhhccccccccc
Confidence 49999995 59999999999999999999999987755 99999999999999999999999999999765433222
Q ss_pred CCCCCCCcchhHHHHhhccchHhHHHHHHHHHHhh-hhhHHHHHHHhcCCchHHHHHHHHHHHhhhhHHHHHHhhccCCC
Q 001139 891 HGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENF-RPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDR 969 (1143)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~-~pvl~~~~~~~~~~~~~w~~~r~~f~~S~A~~Si~~yilglgDR 969 (1143)
.... +.. ..+...+...+... .+.+.+||.+.++++++|+.+|++|++|+|++|++|||||+|||
T Consensus 76 ~~~~-~~~-------------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~r~~f~~sla~~si~~yilg~gDR 141 (235)
T PF00454_consen 76 SNDN-PSR-------------KYKAKLFEKQSSKVPKDGLRQYFLKSFPSAEEWFEARKNFTRSLAAYSILDYILGLGDR 141 (235)
T ss_dssp TCSC--------------------------------TTHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHHHHHHHHT-CS-
T ss_pred cccc-ccc-------------ccccccccccccccccchHHHHHHhcCCChhhhHhhhHhhHHHHHHHhhceEEEeecCC
Confidence 1111 000 00000122223333 34899999999999999999999999999999999999999999
Q ss_pred CCCceEEecCCCeEEEeecchhhccccCCCCCCCCCccccHHHHhhh----cccccccchHHHHHHHHHHHhhChHHHHH
Q 001139 970 HAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGM----GVTGVEGVFRRCCEKTLSVMRTNKEALLT 1045 (1143)
Q Consensus 970 h~~NIll~~~tG~v~hiDfg~~f~~~~~l~~pE~VPFRLT~~i~~~~----g~~g~eG~F~~~~~~~~~~Lr~~~~~l~~ 1045 (1143)
||+||||+..||+++|||||++|+ ++.+++||.||||||+||+++| |+.|.+|.|+.+|+.++++||++++.|++
T Consensus 142 h~~Nili~~~~g~~~hIDfg~~f~-~~~~~~~e~vPFrLT~~~~~~~~~~l~~~~~~g~f~~~~~~~~~~lr~~~~~l~~ 220 (235)
T PF00454_consen 142 HPGNILIDKKTGELIHIDFGFIFG-GKHLPVPETVPFRLTRNMVNAMGGYLGPSGVEGLFRSSCEAILRALRRNKDLLLS 220 (235)
T ss_dssp -TTTEEE-ETTSEEEE--HSSCTT-HHHGSSSS--SSTTHHHHHHHTTTSSSTSHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CchhheeccccceeeeEEeHHhhh-ccccCCCCCCCeEeCHHHHHHHhccCCCchhHhHHHHHHHHHHHHHhcChHHHHH
Confidence 999999999999999999999999 8788999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHccCCccccc
Q 001139 1046 IVEVFIHDPLYKWA 1059 (1143)
Q Consensus 1046 ~L~~f~~Dpl~~w~ 1059 (1143)
+|++|++||+++|.
T Consensus 221 ll~~~~~d~l~~w~ 234 (235)
T PF00454_consen 221 LLELFLRDPLIDWR 234 (235)
T ss_dssp HHHHTTTSCSTTSS
T ss_pred HHHHHHhCCCCCCC
Confidence 99999999999996
No 27
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=100.00 E-value=3.2e-49 Score=437.00 Aligned_cols=260 Identities=23% Similarity=0.344 Sum_probs=218.4
Q ss_pred cceEEEecCC-CCceEEEEEcCCCC-------------eeeEEeecCCcchhhhHHHHHHHHHHHHHHhcCcccccccee
Q 001139 787 AESVMVMNGI-NAPKVVECFGSDGH-------------KYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLG 852 (1143)
Q Consensus 787 ~~~~~v~~s~-~~Pk~i~~~gsdG~-------------~y~~l~K~g~ddlR~D~r~~Ql~~~~N~ll~~~~et~~r~L~ 852 (1143)
.++++|+.|+ .+|.+++|...|+. .+.+|+|.| ||||||++++|+|++||++|++.. ++|.
T Consensus 15 ~~~~~~~~S~ak~P~~l~F~~~~~~~~~~~~~~~~~~~~~~~IfK~g-DDLRQD~l~~Qli~lm~~i~~~~~----ldl~ 89 (311)
T cd05167 15 YKSGTPLQSHAKAPILVTFKVKDRGGDELEEVDDGKVSWQACIFKVG-DDCRQDMLALQLISLFKNIFQSAG----LDLY 89 (311)
T ss_pred ccccEEeccCCCCceEEEEEecCCCccccccccccccceEEEEEeCC-CCccHHHHHHHHHHHHHHHHHHCC----CCeE
Confidence 4677999997 58999999987764 488999965 999999999999999999999765 8999
Q ss_pred eeeceEEEcCCCCceeEecCCCcchHHHhhhhccCCCCCCCCCCCcchhHHHHhhccchHhHHHHHHHHHHhhhhhHHHH
Q 001139 853 VRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYF 932 (1143)
Q Consensus 853 i~~y~Vipls~~~gliE~v~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~ 932 (1143)
+++|+|+|+++++|+||||+|+.|++++... ..+.+.+|
T Consensus 90 l~~Y~vi~t~~~~GlIE~V~ns~s~~~i~~~-----------------------------------------~~~~l~~~ 128 (311)
T cd05167 90 LFPYRVVATGPGCGVIEVVPNSKSRDQIGRT-----------------------------------------TDNGLYEY 128 (311)
T ss_pred eEEEeEEecCCCceEEEEeCCcHHHHHHHhh-----------------------------------------cccHHHHH
Confidence 9999999999999999999999999886321 01236778
Q ss_pred HHHhcCC--chHHHHHHHHHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhccccCC-CCCCCCCcccc
Q 001139 933 FLERFLQ--PAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML-KTPERVPFRLT 1009 (1143)
Q Consensus 933 ~~~~~~~--~~~w~~~r~~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~~~~l-~~pE~VPFRLT 1009 (1143)
|.+.|.+ +..|..+|.+|++|+|+|||+||||||||||++|||||. +|+++|||||++|+.++.- ..+|+||||||
T Consensus 129 f~~~~~~~~~~~~~~a~~nF~~S~Agysv~tYiLgigDRHn~NILid~-~G~l~HIDFG~il~~~p~~~~~~E~~PFkLT 207 (311)
T cd05167 129 FTSKYGDESSLAFQKARENFIRSMAAYSLISYLLQIKDRHNGNIMIDD-DGHIIHIDFGFIFEISPGGNLKFESAPFKLT 207 (311)
T ss_pred HHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccCccceEEcC-CCCEEEEeeHHhhccCCCCCCCcCCCCEeec
Confidence 8888865 479999999999999999999999999999999999996 9999999999999987642 45799999999
Q ss_pred HHHHhhhccccccc---chHHHHHHHHHHHhhChHHHHHHHHHHccCCccccccChhHHHhhhhhcccccccCCCCCccc
Q 001139 1010 RDIIDGMGVTGVEG---VFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDE 1086 (1143)
Q Consensus 1010 ~~i~~~~g~~g~eG---~F~~~~~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1086 (1143)
++|+++||+.+..| .|+..|..++.+||++.+.|++++++|+..++.++.
T Consensus 208 ~emv~~mGg~~~s~~f~~F~~~~~~~~~~lR~~~~~il~l~~lm~~s~lp~~~--------------------------- 260 (311)
T cd05167 208 KEMVQIMGGSMEATPFKWFVELCVRAFLAVRPYMDEIVSLVELMLDSGLPCFR--------------------------- 260 (311)
T ss_pred HHHHHHhCCCCcchhHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCchhhh---------------------------
Confidence 99999999988665 677889999999999999999999999977776542
Q ss_pred cccchhHHHHHHHHhhccCCCCCCCccCHHHHHHHHHHHccCh
Q 001139 1087 YEGNKDAERALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDP 1129 (1143)
Q Consensus 1087 ~~~~~~a~~~~~~v~~kl~g~~~~~~~sv~~~V~~LI~~Atd~ 1129 (1143)
..++..+++|+.-.. ...-...++..||.+|.+.
T Consensus 261 -------~~~i~~l~~rf~l~~--se~~a~~~~~~lI~~s~~~ 294 (311)
T cd05167 261 -------GDTIKNLRQRFAPEK--SEREAAEFMLSLIAESYEK 294 (311)
T ss_pred -------HHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHhc
Confidence 123555666664211 1122566888999988875
No 28
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=100.00 E-value=2e-47 Score=425.94 Aligned_cols=247 Identities=19% Similarity=0.339 Sum_probs=212.0
Q ss_pred ccccCCCCCCCcCCCCcCccccc-cceEEEecCCCCceEEEEEcCC--CCeeeEEeecCCcchhhhHHHHHHHHHHHHHH
Q 001139 764 TATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFL 840 (1143)
Q Consensus 764 t~~lp~~~~~~~~~~~~~~i~~~-~~~~~v~~s~~~Pk~i~~~gsd--G~~y~~l~K~g~ddlR~D~r~~Ql~~~~N~ll 840 (1143)
+..+|++|... +.++ .++++|+.|+.+|.+++|.+.| |..|.+|+|.| ||||||+.++|++++||++|
T Consensus 49 ~~~lPldP~~~--------v~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~IfK~G-DDLRQD~l~lQli~lmd~i~ 119 (354)
T cd00895 49 SCRLPLSPSLL--------VKGIVPRDCSYFNSNAVPLKLSFQNVDPLGENIRVIFKCG-DDLRQDMLTLQMIRIMNKIW 119 (354)
T ss_pred CCcCCCCCCeE--------EEEEEcCceEEecccCCCeEEEEEecCCCCCeEEEEEeCC-CCccHHHHHHHHHHHHHHHH
Confidence 46788888542 2333 4678999999999999999998 89999999987 99999999999999999999
Q ss_pred hcCccccccceeeeeceEEEcCCCCceeEecCCCcchHHHhhhhccCCCCCCCCCCCcchhHHHHhhccchHhHHHHHHH
Q 001139 841 RNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQE 920 (1143)
Q Consensus 841 ~~~~et~~r~L~i~~y~Vipls~~~gliE~v~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~ 920 (1143)
+++. .+|++++|+|+|+++++|+||||||+.|+++|.... |..+.+.
T Consensus 120 ~~~~----ldl~l~pY~vl~tg~~~G~IE~V~ns~tl~~I~~~~----g~~g~~~------------------------- 166 (354)
T cd00895 120 VQEG----LDMRMVIFRCFSTGRGRGMVEMIPNAETLRKIQVEH----GVTGSFK------------------------- 166 (354)
T ss_pred HHcC----CCceEEEEEEEecCCCceEEEEeCChhhHHHHHHHh----CcCcccc-------------------------
Confidence 9986 889999999999999999999999999999997531 1111110
Q ss_pred HHHhhhhhHHHHHHHhcCCchHHHHHHHHHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhccccCC--
Q 001139 921 VCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML-- 998 (1143)
Q Consensus 921 i~~~~~pvl~~~~~~~~~~~~~w~~~r~~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~~~~l-- 998 (1143)
...+.+||.+.+|++..|..+|.||++|+|+|||+|||||+||||++||||+ .+|+++|||||++|+.++.+
T Consensus 167 -----~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsV~tYiLgIgDRHndNImi~-~~GhlfHIDFG~iLg~~~~~g~ 240 (354)
T cd00895 167 -----DRPLADWLQKHNPTEDEYEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLK-TTGHMFHIDFGRFLGHAQMFGN 240 (354)
T ss_pred -----cchHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHccccccCCCceeEc-CCCCEEEEeeHHhcCCCcccCC
Confidence 0126788888899999999999999999999999999999999999999999 59999999999999987543
Q ss_pred CCCCCCCccccHHHHhhhcccccc----cchHHHHHHHHHHHhhChHHHHHHHHHHccCCcccc
Q 001139 999 KTPERVPFRLTRDIIDGMGVTGVE----GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKW 1058 (1143)
Q Consensus 999 ~~pE~VPFRLT~~i~~~~g~~g~e----G~F~~~~~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~w 1058 (1143)
..+|++||+||++|+++||..|.. ..|+..|..++.+||+|.+.|++++++|+.-.+.+.
T Consensus 241 ~~re~~PF~Lt~emv~vm~gg~~~S~~f~~F~~lc~~ay~~lRk~~~~il~L~~lM~~sgiP~l 304 (354)
T cd00895 241 IKRDRAPFVFTSDMAYVINGGDKPSSRFHDFVDLCCQAYNLIRKHTHLFLNLLGLMLSCGIPEL 304 (354)
T ss_pred CCcCCCCccccHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCccc
Confidence 368999999999999999754432 369999999999999999999999999996655543
No 29
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=1.4e-46 Score=419.18 Aligned_cols=248 Identities=22% Similarity=0.373 Sum_probs=207.0
Q ss_pred ccccCCCCCCCcCCCCcCccccc-cceEEEecCCCCceEEEEEcCCC------CeeeEEeecCCcchhhhHHHHHHHHHH
Q 001139 764 TATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSDG------HKYRQLAKSGNDDLRQDAVMEQFFGLV 836 (1143)
Q Consensus 764 t~~lp~~~~~~~~~~~~~~i~~~-~~~~~v~~s~~~Pk~i~~~gsdG------~~y~~l~K~g~ddlR~D~r~~Ql~~~~ 836 (1143)
+..+|++|.. .+.++ .+++.|++|+.+|.+|+|.++|| ..|.+++|.| ||||||++++|++++|
T Consensus 52 ~~~lPl~P~~--------~~~~i~~e~c~v~~S~~~Pl~l~f~~~d~~~~~~~~~~~~IfK~G-DDLRQD~l~lQli~lm 122 (366)
T cd05175 52 GFTSPLNPAH--------QLGNLRLEECRIMSSAKRPLWLNWENPDIMSELLFQNNEIIFKNG-DDLRQDMLTLQIIRIM 122 (366)
T ss_pred CCCCCCCCce--------EEEEEEeccceeechhcCCeEEEEEcCCcccccccCCcceEEeCC-CCccHHHHHHHHHHHH
Confidence 4567887753 23333 45788999999999999999998 4689999976 9999999999999999
Q ss_pred HHHHhcCccccccceeeeeceEEEcCCCCceeEecCCCcchHHHhhhhccCCCCCCCCCCCcchhHHHHhhccchHhHHH
Q 001139 837 NTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRI 916 (1143)
Q Consensus 837 N~ll~~~~et~~r~L~i~~y~Vipls~~~gliE~v~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 916 (1143)
|.+|+++. .+|++++|.|+|+++++|+||||+|+.|+++|.... +....+
T Consensus 123 d~i~~~~~----ldL~l~pY~vl~tg~~~GlIE~V~ns~tl~~I~~~~----~~~~~~---------------------- 172 (366)
T cd05175 123 ENIWQNQG----LDLRMLPYGCLSIGDCVGLIEVVRNSHTIMQIQCKG----GLKGAL---------------------- 172 (366)
T ss_pred HHHHHHCC----CCeEEEEEEEEEecCCceEEEEcCCchhHHHHHhcc----cccccc----------------------
Confidence 99999876 899999999999999999999999999999986421 110000
Q ss_pred HHHHHHHhhhhhHHHHHHHhcCCchHHHHHHHHHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhcccc
Q 001139 917 AFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL 996 (1143)
Q Consensus 917 ~f~~i~~~~~pvl~~~~~~~~~~~~~w~~~r~~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~~~ 996 (1143)
.|+ .+.+++|+.+.++ ...|..+|.||++|+|+|||+||||||||||++||||+. +|+++|||||++|+.++
T Consensus 173 ~~~------~~~l~~~l~~~~~-~~~~~~a~~nF~~S~AgYsV~tYiLGIgDRHndNImi~~-~G~l~HIDFG~iLg~~p 244 (366)
T cd05175 173 QFN------SHTLHQWLKDKNK-GEMYDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMVKD-DGQLFHIDFGHFLDHKK 244 (366)
T ss_pred ccC------chhHHHHHhhcCC-cHHHHHHHHHHHHHHHHHHHHHHHhcccccCccceeEcC-CCCEEEEehHHhhcCCC
Confidence 000 1246677776654 457889999999999999999999999999999999995 99999999999999876
Q ss_pred C-C-CCCCCCCccccHHHHhhhcccc-----cc--cchHHHHHHHHHHHhhChHHHHHHHHHHccCCcccc
Q 001139 997 M-L-KTPERVPFRLTRDIIDGMGVTG-----VE--GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKW 1058 (1143)
Q Consensus 997 ~-l-~~pE~VPFRLT~~i~~~~g~~g-----~e--G~F~~~~~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~w 1058 (1143)
. + ..||+||||||++|+..||..+ .+ +.|+..|..++.+||+|.+.|++++++++...+.+.
T Consensus 245 ~~~~~~~E~~PFkLT~emv~v~~gg~~~~~~s~~f~~F~~lc~~ay~~lRk~~~~ii~L~~lM~~sgiP~l 315 (366)
T cd05175 245 KKFGYKRERVPFVLTQDFLIVISKGAQECTKTREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPEL 315 (366)
T ss_pred ccCCCCCCCCCeEecHHHHHHhccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 4 4 4699999999999999997532 33 589999999999999999999999999986666554
No 30
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-39 Score=368.12 Aligned_cols=421 Identities=21% Similarity=0.354 Sum_probs=297.5
Q ss_pred HHHHHHHHHHhccCCCcchhhHHHHHhhhccCCC------------cHHHHHHHHHhhcccCccchhHchHHHHhhhCCC
Q 001139 575 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSS------------RQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 642 (1143)
Q Consensus 575 ~~Al~~Yl~sL~~~~~~~~~~~~RllsLWf~~~~------------~~~v~~~l~~~~~~ip~~k~l~~ipQL~srL~~~ 642 (1143)
.+|+..|++|+.+.+........+++--|=+..- ++.|.......+.....-..+-.++||+.-++..
T Consensus 308 kKALtK~L~sv~W~~~qe~kqal~lM~~W~~id~~dalellss~f~~~sVrayavsrl~~a~deelllYL~qlvqal~ye 387 (843)
T KOG0906|consen 308 KKALTKFLRSVNWRDPQEVKQALALMDKWEEIDVEDALELLSSYFTHPSVRAYAVSRLKGADDEELLLYLLQLVQALKYE 387 (843)
T ss_pred HHHHHHHHHHhhcCChHHHHHHHHHhhccccchhhhhhhhccccccCHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 4799999999999998777778899999987642 3456667777777777767888899998888765
Q ss_pred c----cc--------ccc---------------------------ccHHHHHHHHHHHHHHhCChh---hHHHHHhcccc
Q 001139 643 K----DA--------LGL---------------------------HNFQFALVSLVKKMAIDHPYH---TIFQLLALANG 680 (1143)
Q Consensus 643 ~----~~--------~~~---------------------------~~f~~~L~~ll~~i~~~hP~~---~l~~l~~~~~~ 680 (1143)
+ .+ .+. ....+.|..+|++.|...|+- ..|.+.+....
T Consensus 388 ~~~~~p~~~~~~~v~s~~~~si~s~~t~pl~s~ss~~~ts~tke~p~~~s~La~fLi~Ral~n~~l~nflywyl~~e~Ed 467 (843)
T KOG0906|consen 388 NGQQLPEEGNPVPVVSEREGSIPSVATTPLESLSSRDMTSTTKEAPKAASDLATFLISRALVNPQLANFLYWYLKVEIED 467 (843)
T ss_pred hhccCCcccCcCcccccccccccccccCccccccCCCccccccccccccchHHHHHHHHHhcCccccceEEEEEEEEecC
Confidence 4 10 000 011225888999999888873 33444333221
Q ss_pred cchhhhhccccchhhhhhHHHHHHHHHHHHHh--hH---HHHHHHHHHHHHHHHHHhhhhhcccc-cccccc-cchhhhh
Q 001139 681 DRIKDKQRSRNSFVVDMDKKLAAENLLEELSS--YH---GAIIRQMKQMVDVYIKLAELETRRED-TNKRIQ-LPREIRC 753 (1143)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~--~~---~~~~~~~~~~~~~~~~la~~~~~~~~-~~~~~~-~~~~~~~ 753 (1143)
....+ +... .....++.+.+ .. ...+.....+++.++.+++....... ..+++. +...+..
T Consensus 468 ~~~~k----ry~s--------i~~~f~~~l~K~~d~r~~~~~L~~Q~~lVd~L~~i~~~v~~~~g~~~kK~e~L~~lL~~ 535 (843)
T KOG0906|consen 468 TPYSK----RYLS--------IMSSFLEALSKRPDGRAIRGSLEAQQALVDELRRIMKEVKRGSGRRKKKIERLRGLLGD 535 (843)
T ss_pred ChHHH----HHHH--------HHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHhc
Confidence 11110 0000 11122222222 01 12344556777877777765322211 112221 1111111
Q ss_pred hcccccccccccccCCCCCCCcCCCCcCccccc-cceEEEecCCCCceEEEEEcCCCC-eeeEEeecCCcchhhhHHHHH
Q 001139 754 LRQLELVPVVTATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSDGH-KYRQLAKSGNDDLRQDAVMEQ 831 (1143)
Q Consensus 754 l~~l~~~p~~t~~lp~~~~~~~~~~~~~~i~~~-~~~~~v~~s~~~Pk~i~~~gsdG~-~y~~l~K~g~ddlR~D~r~~Q 831 (1143)
.+...+..+....+|++|+. .|.++ .+..+++.|...|-+|+|+..+|. .|+.++|.| ||||||+.|.|
T Consensus 536 ~~~~~l~~~~~i~lpldp~v--------~i~~Iip~t~~~FkSsl~Pl~l~fkt~~g~g~y~vIFK~G-DDLrQDqlV~Q 606 (843)
T KOG0906|consen 536 HKHMNLLDVRLIALPLDPDV--------LIKGIIPDTASLFKSSLMPLKLTFKTDDGGGKYPVIFKKG-DDLRQDQLVLQ 606 (843)
T ss_pred ccccccccceeeccCCCCCc--------eEeeecCchhhhhhhccCceeEEEEecCCCCceeEEEecC-cchhHHHHHHH
Confidence 11112233334456777754 33333 355678899999999999999998 999999997 99999999999
Q ss_pred HHHHHHHHHhcCccccccceeeeeceEEEcCCCCceeEecCCCcchHHHhhhhccCCCCCCCCCCCcchhHHHHhhccch
Q 001139 832 FFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNV 911 (1143)
Q Consensus 832 l~~~~N~ll~~~~et~~r~L~i~~y~Vipls~~~gliE~v~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 911 (1143)
++++||.+|++.+ .+|.+++|+|+|+++.-|++|+|+ +.|+..|+.....
T Consensus 607 ii~lMd~LLkken----lDLkLtpYkVLatg~~eG~vefI~-s~~la~Ils~~~~------------------------- 656 (843)
T KOG0906|consen 607 IIRLMDRLLKKEN----LDLKLTPYKVLATGPKEGFVEFIP-SKPLARILSEYHS------------------------- 656 (843)
T ss_pred HHHHHHHHhcccc----ccccceeeEEeccCCCcccEEeec-CCcHHHHHHHHHH-------------------------
Confidence 9999999999987 899999999999999999999999 4788888753110
Q ss_pred HhHHHHHHHHHHhhhhhHHHHHHHhcCCc----hHHHHHHHHHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEee
Q 001139 912 KDKRIAFQEVCENFRPVLHYFFLERFLQP----AYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHID 987 (1143)
Q Consensus 912 ~~k~~~f~~i~~~~~pvl~~~~~~~~~~~----~~w~~~r~~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiD 987 (1143)
+..|+.+..|+- ..=...+.+|.+|||+||+++||||+||||++|+|+.+ +|++||||
T Consensus 657 -----------------I~~ylke~~p~e~ap~gi~~~v~dnfVkScaGYsVitYILGvGDRhldNLllT~-dGk~FHiD 718 (843)
T KOG0906|consen 657 -----------------ILMYLKEDRPDENAPFGISPEVMDNFVKSCAGYSVITYILGVGDRHLDNLLLTK-DGKLFHID 718 (843)
T ss_pred -----------------HHHHHHhhCCCcCCCCCCChhHHHHHHHhhccceeeeeeecccCCCcCceEEcc-CCcEEEEe
Confidence 111222222221 22346778999999999999999999999999999996 99999999
Q ss_pred cchhhccccCCCCCCCCCccccHHHHhhhcccccc--cchHHHHHHHHHHHhhChHHHHHHHHHHccCCccccccChhHH
Q 001139 988 LGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVE--GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKA 1065 (1143)
Q Consensus 988 fg~~f~~~~~l~~pE~VPFRLT~~i~~~~g~~g~e--G~F~~~~~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~w~~~~~~~ 1065 (1143)
||++||+. |.|-+.|+.|++.|+++||+.... -.|+..|..++..||++.+.|++++++++..-+.+....|.++
T Consensus 719 FgyIlGRD---PKP~pp~MkL~kemve~mgg~es~~Yq~F~s~c~~Af~~LRRssnlIlnLf~LM~~~~IPDia~dp~k~ 795 (843)
T KOG0906|consen 719 FGYILGRD---PKPFPPPMKLAKEMVEGMGGAESKQYQEFRSYCYEAFLILRRSSNLILNLFSLMADANIPDIAFDPNKA 795 (843)
T ss_pred eeeeccCC---CCCCCCccccCHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCceeeCcchh
Confidence 99999988 567778999999999999976654 5799999999999999999999999999988887776666554
Q ss_pred Hh
Q 001139 1066 LQ 1067 (1143)
Q Consensus 1066 ~~ 1067 (1143)
..
T Consensus 796 I~ 797 (843)
T KOG0906|consen 796 IL 797 (843)
T ss_pred hH
Confidence 43
No 31
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-39 Score=384.70 Aligned_cols=416 Identities=19% Similarity=0.264 Sum_probs=315.8
Q ss_pred HHHHHHHHHhccCCCcchhhHHHHHhhhccCC------------CcHHHHHHHHHhhcccCccchhHchHHHHhhhCCCc
Q 001139 576 LALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTK 643 (1143)
Q Consensus 576 ~Al~~Yl~sL~~~~~~~~~~~~RllsLWf~~~------------~~~~v~~~l~~~~~~ip~~k~l~~ipQL~srL~~~~ 643 (1143)
.||--.|.|..-.+.-..-.+.-+|.-|-... .|++|.+...+.+.+++....+..+|||+..|.++.
T Consensus 858 ~aLPlVL~Sap~W~~~~l~~~y~lL~~Wa~l~Pl~ALelL~~kfPDqeVR~~AVqwi~~ls~DeL~d~LPQlVQALK~E~ 937 (1639)
T KOG0905|consen 858 NALPLVLASAPSWDWGNLMDVYQLLHQWAPLRPLIALELLLPKFPDQEVRAHAVQWIARLSNDELLDYLPQLVQALKFEL 937 (1639)
T ss_pred chhHHHHhcCCCCchhhHHHHHHHHHhccccCHHHHHHhhcccCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 35666666665445444556778888887553 467889999999999999999999999999999864
Q ss_pred cccccccHHHHHHHHHHHHHHhCCh--hhHHHHHhcccccchhhhhccccchhhhhhHHHHHHHHHHHHHhhHH----HH
Q 001139 644 DALGLHNFQFALVSLVKKMAIDHPY--HTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSSYHG----AI 717 (1143)
Q Consensus 644 ~~~~~~~f~~~L~~ll~~i~~~hP~--~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~----~~ 717 (1143)
. ..+.|.++|...+...++ |-+|+++.-...+. ....++ +.++..+....| +-
T Consensus 938 y------l~S~Lv~FLL~rsl~sl~~ah~lYWlLk~~l~d~---qfs~rY------------q~ll~aLl~~~gk~L~~e 996 (1639)
T KOG0905|consen 938 Y------LKSALVQFLLSRSLVSLQFAHELYWLLKDALDDS---QFSLRY------------QNLLAALLDCCGKNLREE 996 (1639)
T ss_pred h------ccCHHHHHHHHHHhcchHHHHHHHHHHhhccccc---eeehHH------------HHHHHHHHHHhCHHHHHH
Confidence 3 236789999999988887 55666655432211 001121 222222222211 12
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhcccccccccccccCCCCCCCcCCCCcCccccccceEEEecCCC
Q 001139 718 IRQMKQMVDVYIKLAELETRREDTNKRIQLPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAESVMVMNGIN 797 (1143)
Q Consensus 718 ~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~l~~l~~~p~~t~~lp~~~~~~~~~~~~~~i~~~~~~~~v~~s~~ 797 (1143)
+..-.+|++++..+|+-........+...+.+.+..+.+. ++-..|..||+.|.-... |. . ...+.+++|..
T Consensus 997 f~~Q~~Lv~~L~~iae~Vr~as~s~Rq~vL~~~l~~v~~f-f~~n~tcrLPL~Pal~vk-Gv--~----i~~CSyFnSNA 1068 (1639)
T KOG0905|consen 997 FKKQHKLVNELGSIAEDVRSASGSARQHVLRTGLGRVDSF-FLQNNTCRLPLCPALDVK-GV--R----IRECSYFNSNA 1068 (1639)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhHHHHHHH-HHhCCceecccCchheec-cc--c----ccccccccCCC
Confidence 2234578888888887543222222222344444443332 234457788888754321 11 1 24577889999
Q ss_pred CceEEEEEc--CCCCeeeEEeecCCcchhhhHHHHHHHHHHHHHHhcCccccccceeeeeceEEEcCCCCceeEecCCCc
Q 001139 798 APKVVECFG--SDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTV 875 (1143)
Q Consensus 798 ~Pk~i~~~g--sdG~~y~~l~K~g~ddlR~D~r~~Ql~~~~N~ll~~~~et~~r~L~i~~y~Vipls~~~gliE~v~~~~ 875 (1143)
.|-+|+|+| -+|..+..++|.| ||||||+.++|++++||++|.++. .+|++.+|+++|.+.+.|++|.|+|+.
T Consensus 1069 ~PLKitFvnadp~geni~iIfK~g-DDLRQDml~lQmI~iMdkIWl~eg----LDlrMViFrc~stG~~rgMvElVp~a~ 1143 (1639)
T KOG0905|consen 1069 LPLKITFVNADPLGENISIIFKCG-DDLRQDMLVLQMIRIMDKIWLQEG----LDLRMVIFRCLSTGYDRGMVELVPNAE 1143 (1639)
T ss_pred cceEEEEecCCCccccceeeeecC-chHHHHHHHHHHHHHHHHHHHhcC----CceeEEEEEeecccccccceeecccHH
Confidence 999999999 6699999999987 999999999999999999999987 899999999999999999999999999
Q ss_pred chHHHhhhhccCCCCCCCCCCCcchhHHHHhhccchHhHHHHHHHHHHhhhhhHHHHHHHhcCCchHHHHHHHHHHHhhh
Q 001139 876 PLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVA 955 (1143)
Q Consensus 876 ~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~~~~~~~w~~~r~~f~~S~A 955 (1143)
||..|-..+ |..+.+ + + . .+.+|+.+..|+..++-.+-.||+.|||
T Consensus 1144 TLrKIQve~----GltGsf--------------k---D------------~-pla~WL~KhNp~e~eYekA~eNFiySCA 1189 (1639)
T KOG0905|consen 1144 TLRKIQVEE----GLTGSF--------------K---D------------R-PLAKWLMKHNPSEFEYEKAVENFIYSCA 1189 (1639)
T ss_pred HHHHHHHHh----cccccc--------------c---c------------c-hHHHHHHhcCCCHHHHHHHHHHHHHhcc
Confidence 999987543 222211 0 1 1 2789999999999999999999999999
Q ss_pred hHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhccccCC--CCCCCCCccccHHHHhhhccccc----ccchHHHH
Q 001139 956 ASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML--KTPERVPFRLTRDIIDGMGVTGV----EGVFRRCC 1029 (1143)
Q Consensus 956 ~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~~~~l--~~pE~VPFRLT~~i~~~~g~~g~----eG~F~~~~ 1029 (1143)
++|+++||||++|||.+|||+.+ ||++||||||-.+|....+ -...++||-+|.+|..++...+- ...|...|
T Consensus 1190 G~cVaTYVLGIcDRHNDNIMl~~-sGHmFHIDFGKFLGhaQMfg~fKRDRaPFVfTSdMayvINgG~kpt~~fq~FVDlC 1268 (1639)
T KOG0905|consen 1190 GWCVATYVLGICDRHNDNIMLTK-SGHMFHIDFGKFLGHAQMFGGFKRDRAPFVFTSDMAYVINGGDKPTQRFQDFVDLC 1268 (1639)
T ss_pred cceeeeEeeecccccCCceEEec-cCcEEEEehhhhcchHHHhcccccccCCeEEeccchhhhcCCCCCchHHHHHHHHH
Confidence 99999999999999999999995 9999999999999977654 35799999999999999976544 35799999
Q ss_pred HHHHHHHhhChHHHHHHHHHHccCCcccccc
Q 001139 1030 EKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1060 (1143)
Q Consensus 1030 ~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~w~~ 1060 (1143)
+.++.++|+|.+.++++|+.|+...+..-..
T Consensus 1269 CrAyNiiRK~t~lllnlL~lM~~agiPeln~ 1299 (1639)
T KOG0905|consen 1269 CRAYNIIRKNTNLLLNLLRLMACAGIPELNS 1299 (1639)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhcCCCCccc
Confidence 9999999999999999999999998887654
No 32
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-37 Score=359.05 Aligned_cols=418 Identities=21% Similarity=0.304 Sum_probs=296.7
Q ss_pred HHHHHHHHHHhccCCCcchhhHHHHHhhhccCC------------CcHHHHHHHHHhhcccCccchhHchHHHHhhhCCC
Q 001139 575 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 642 (1143)
Q Consensus 575 ~~Al~~Yl~sL~~~~~~~~~~~~RllsLWf~~~------------~~~~v~~~l~~~~~~ip~~k~l~~ipQL~srL~~~ 642 (1143)
-.++.--+.|+.+++.-+...+.-+|.-|=..+ +|+.|.....+++..+....++..+-||+.-|.++
T Consensus 578 Pe~L~kLllsvkW~~redvAqmy~LL~~Wp~l~v~~aleLLd~nypD~~VR~fAV~~L~~Lsdd~l~~YLLqLVQalKyE 657 (1076)
T KOG0904|consen 578 PEALPKLLLSVKWNKREDVAQMYYLLKDWPPLSVELALELLDCNYPDPNVRAFAVRCLEQLSDDDLLQYLLQLVQALKYE 657 (1076)
T ss_pred hHHHHHHHheeeeccHHHHHHHHHHHhhCCCCCHHHHHHHhcCCCCcHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcc
Confidence 456666788888888767766888888887654 45678888889999999999999999999999986
Q ss_pred ccccccccHHHHHHHHHHHHHHhCC---hhhHHHHHhcccccchhhhhccccchhhhhhHHHHHHHHHHHHHhhHHHHHH
Q 001139 643 KDALGLHNFQFALVSLVKKMAIDHP---YHTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSSYHGAIIR 719 (1143)
Q Consensus 643 ~~~~~~~~f~~~L~~ll~~i~~~hP---~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~ 719 (1143)
+. .++.|..+|.+.|...- |..+|+|.+......... |-+. -.+..+.....+...+-+
T Consensus 658 py------lds~L~rFLL~RAL~N~RIGHflFWhLRSEm~~~~~~~----Rfgl--------lLEaYlRGc~~hlk~l~k 719 (1076)
T KOG0904|consen 658 PY------LDSALVRFLLKRALRNQRIGHFLFWHLRSEMAQPSVQQ----RFGL--------LLEAYLRGCTHHLKVLTK 719 (1076)
T ss_pred ch------hHhHHHHHHHHHHhhccccchhhhhhHHHHhccHHHHH----HHHH--------HHHHHHhccHHHHHHHHH
Confidence 43 56778888888876543 357899988754321110 0000 111122222122222223
Q ss_pred HHHHHHHHHHHHhhhh---hcccccccccccch-hhhhhcccccccccccccCCCCCCCcCCCCcCccccccceEEEecC
Q 001139 720 QMKQMVDVYIKLAELE---TRREDTNKRIQLPR-EIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAESVMVMNG 795 (1143)
Q Consensus 720 ~~~~~~~~~~~la~~~---~~~~~~~~~~~~~~-~~~~l~~l~~~p~~t~~lp~~~~~~~~~~~~~~i~~~~~~~~v~~s 795 (1143)
|++ +++.+.++.... ..+++..+.+..-+ .++.....+.+ ....-|++|.... |. =+.++++||+|
T Consensus 720 Qve-~l~kLk~lt~~iK~~~~K~~~~~~~~~l~~~lr~~~~~~~l--q~l~sPLdP~~~l--ge-----l~iekckvM~S 789 (1076)
T KOG0904|consen 720 QVE-ALEKLKKLTDLIKLSAEKEDVSQVKEQLKLCLRQLANSEAL--QNLQSPLDPSLKL--GE-----LIIEKCKVMDS 789 (1076)
T ss_pred HHH-HHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhHHHHHHH--HhccCCCChhhhh--cc-----hhhhhhhhhhc
Confidence 322 223333333321 11111111111111 11111111100 1122355554221 11 13468899999
Q ss_pred CCCceEEEEE----cCCCCeeeEEeecCCcchhhhHHHHHHHHHHHHHHhcCccccccceeeeeceEEEcCCCCceeEec
Q 001139 796 INAPKVVECF----GSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWV 871 (1143)
Q Consensus 796 ~~~Pk~i~~~----gsdG~~y~~l~K~g~ddlR~D~r~~Ql~~~~N~ll~~~~et~~r~L~i~~y~Vipls~~~gliE~v 871 (1143)
+.+|-.+.+- |+++ ....++|+| ||||||..+.|++++|+.||+.+. .+|.+.+|.++|++...||||.|
T Consensus 790 kkrPLwl~~~Np~~~s~~-~v~iIFKNG-DDLRQDMLtLQmLriMd~iWk~~g----lDlrm~PYgcls~Gd~iGlIEVV 863 (1076)
T KOG0904|consen 790 KKRPLWLVFENPDAGSNL-SVGIIFKNG-DDLRQDMLTLQMLRIMDNIWKTEG----LDLRMLPYGCLSTGDRIGLIEVV 863 (1076)
T ss_pred cCCceEEEecCCCcccCC-ceeEEEcCC-chHHHHHHHHHHHHHHHHHHHhcC----CCeeccccccccccceeeeEEEe
Confidence 9999999984 3444 567899987 999999999999999999999887 89999999999999999999999
Q ss_pred CCCcchHHHhhhhccCCCCCCCCCCCcchhHHHHhhccchHhHHHHHHHHHHhhhh-hHHHHHHHhcCCchHHHHHHHHH
Q 001139 872 DGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRP-VLHYFFLERFLQPAYWFEKRLAY 950 (1143)
Q Consensus 872 ~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~p-vl~~~~~~~~~~~~~w~~~r~~f 950 (1143)
+|+.|+.+|-.+.... .+... |.+ .|.+|+.+..|.....=.+-..|
T Consensus 864 ~~s~TIa~IQ~~~g~~-~at~a-------------------------------fn~~~L~~WLKekNp~e~kld~AIe~F 911 (1076)
T KOG0904|consen 864 RNSETIANIQLNTGNM-AATAA-------------------------------FNKDALLNWLKEKNPGEDKLDAAIEEF 911 (1076)
T ss_pred cCchhhhhhhhccccc-eeecc-------------------------------CCHHHHHHHHhhcCchHHHHHHHHHHH
Confidence 9999999986431100 01011 122 57888877777666677888999
Q ss_pred HHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhccccC-C-CCCCCCCccccHHHHhhhcccccc------
Q 001139 951 TRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-L-KTPERVPFRLTRDIIDGMGVTGVE------ 1022 (1143)
Q Consensus 951 ~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~~~~-l-~~pE~VPFRLT~~i~~~~g~~g~e------ 1022 (1143)
|.|||+||+++||||+||||.+|||+.. ||++||||||.++|.++. | -..|+|||-||++++..|+-.+..
T Consensus 912 t~SCAGYcVATyVLGIgDRHsDNIMvke-~GqlFHIDFGHiLGh~KsKlGi~RERvPFvLT~dFl~VI~~G~~~~~~~eF 990 (1076)
T KOG0904|consen 912 TLSCAGYCVATYVLGIGDRHSDNIMVKE-TGQLFHIDFGHILGHFKSKLGINRERVPFVLTYDFLHVIQKGKTKNSEKEF 990 (1076)
T ss_pred HHhhccceeeeeeecccccccCceEEec-cCcEEEEEhhhhhccchhhcCcccccCceEeecceeeeecccCCCCchhHH
Confidence 9999999999999999999999999996 999999999999998864 4 457999999999999999865442
Q ss_pred cchHHHHHHHHHHHhhChHHHHHHHHHHccCCccccc
Q 001139 1023 GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1059 (1143)
Q Consensus 1023 G~F~~~~~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~w~ 1059 (1143)
+.|+.+|+.++-+||+|.+.+++++..++--.|.+-+
T Consensus 991 ~kFq~~C~~AYl~lr~H~nLfi~LFsmMl~~glPELs 1027 (1076)
T KOG0904|consen 991 QKFQELCEKAYLALRRHGNLFISLFSMMLGTGLPELS 1027 (1076)
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHhcCCCccc
Confidence 6799999999999999999999999999999888754
No 33
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=100.00 E-value=1.3e-35 Score=345.29 Aligned_cols=317 Identities=30% Similarity=0.393 Sum_probs=255.1
Q ss_pred hHHHHHHHHcCCCCCCCcccCCCCCCCCCCCccchhhhhHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 001139 189 TKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEESTEY 268 (1143)
Q Consensus 189 ~~~~~eaAWrl~~Wd~~~~~~~~~~~~~~~~~~~~f~~~l~~~L~al~~~d~~~~~~~l~~aR~~l~~~Ls~~~~ES~~~ 268 (1143)
+|+++|||||+|+||.+.++. +... ....+..+|+++.++++++++++...|+++|..++.++++++.|||.+
T Consensus 1 ~~~~~eaaWrl~~Wd~l~~~~--~~~~-----~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~ 73 (352)
T PF02259_consen 1 APLAAEAAWRLGDWDLLEEYL--SQSN-----EDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQR 73 (352)
T ss_pred ChHHHHHHHhcCChhhHHHHH--hhcc-----CCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 488999999999999876643 1111 112267899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCccccccccccccCCCCcccchhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 001139 269 IYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRV 348 (1143)
Q Consensus 269 ~y~~l~~Lq~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~rl~~~~~~~~~~E~iL~~R~~ 348 (1143)
+|+.+++||+|.||||++++...... .....+.+.+.|++|++.+.++|++|++||++|+.
T Consensus 74 ~y~~l~~lq~L~Elee~~~~~~~~~~-------------------~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~ 134 (352)
T PF02259_consen 74 AYPSLVKLQQLVELEEIIELKSNLSQ-------------------NPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRL 134 (352)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhcc-------------------cHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999999999999999985422210 12356779999999999999999999999999999
Q ss_pred HHHhhcchhHHHHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHH
Q 001139 349 LLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYI 428 (1143)
Q Consensus 349 ll~~l~~~~~~~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l 428 (1143)
+++.+.....+..+|+++|++|||+|++++|.++|.++..+....... .+.+.+|+||++|++|++..|+..|+.+
T Consensus 135 ~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~----~~~v~~e~akllw~~g~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 135 VLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL----LPRVFLEYAKLLWAQGEQEEAIQKLREL 210 (352)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC----CcchHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999766667789999999999999999999999999987654221111 2246799999999999999999999988
Q ss_pred HHh-ccC------------------------------CCchhHHHHHhhhhHHhh----hcCChHHHHHHhhhhhhhccc
Q 001139 429 SEN-YES------------------------------NEEAPDVYRLVGKWLAES----RSSNSRIILENYLKPAVSFSE 473 (1143)
Q Consensus 429 ~~~-~~~------------------------------~~~~a~~~~llg~Wlaes----r~e~~~~I~~~Y~~~a~~~~~ 473 (1143)
+.+ ... ....++++.++|+|+.+. ...+.+++++.|.. |+.+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~-a~~~~- 288 (352)
T PF02259_consen 211 LKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKE-ATKLD- 288 (352)
T ss_pred HHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHH-HHHhC-
Confidence 762 110 123478899999999999 88889999988866 66543
Q ss_pred cccccchhhHHHHhhHHhHHHhhHHHHHhhHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHhhhcccCccchhhHHHHHHH
Q 001139 474 DQRTTDKKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQELQ 553 (1143)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~lA~f~D~~~~~~~~~l~s~e~~~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~l~ 553 (1143)
..+.++++++|.|+|..+...... ....
T Consensus 289 ----------~~~~k~~~~~a~~~~~~~~~~~~~-------------------------------~~~~----------- 316 (352)
T PF02259_consen 289 ----------PSWEKAWHSWALFNDKLLESDPRE-------------------------------KEES----------- 316 (352)
T ss_pred ----------hhHHHHHHHHHHHHHHHHHhhhhc-------------------------------cccc-----------
Confidence 245689999999999987753100 0000
Q ss_pred HHHhhcHHHHHHhHHhHHHHHHHHHHHHHHHhccCCCcchhhHHHHHh
Q 001139 554 KQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVS 601 (1143)
Q Consensus 554 k~~~~D~~e~~~l~~~~~~fl~~Al~~Yl~sL~~~~~~~~~~~~Rlls 601 (1143)
+ +..+..|+..||++|++|+.+|+++..+++|||||
T Consensus 317 ----------~--~~~~~~~~~~ai~~y~~al~~~~~~~~~~~~RlLt 352 (352)
T PF02259_consen 317 ----------S--QEDRSEYLEQAIEGYLKALSLGSKYVRQDLPRLLT 352 (352)
T ss_pred ----------c--hhHHHHHHHHHHHHHHHHHhhCCCchHHHhhHhcC
Confidence 0 02345799999999999999999999999999986
No 34
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=99.97 E-value=3.3e-30 Score=311.99 Aligned_cols=373 Identities=19% Similarity=0.263 Sum_probs=251.6
Q ss_pred HHHHHHHHhhcccCccchhHchHHHHhhhCCCccccccccHHHHHHHHHHHHHHh---CChhhHHHHHhcccccchhhhh
Q 001139 611 NVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAID---HPYHTIFQLLALANGDRIKDKQ 687 (1143)
Q Consensus 611 ~v~~~l~~~~~~ip~~k~l~~ipQL~srL~~~~~~~~~~~f~~~L~~ll~~i~~~---hP~~~l~~l~~~~~~~~~~~~~ 687 (1143)
.+.....+.+.+.|+..-+..+||+++.|..+.- .-+..++.+.+.. +-||.+|.+.+....+. .
T Consensus 1351 ~~~~~~~~~l~s~~~~~~~fyvPQiVq~lryDkm--------~~v~~~il~~a~~s~l~aHqliWnm~~n~y~d~----~ 1418 (1803)
T KOG0902|consen 1351 RLMQYAVRVLRSYSPNEMLFYVPQIVQALRYDKM--------GYVEEYILWAAGKSQLFAHQLIWNMKANLYVDE----E 1418 (1803)
T ss_pred HHHHHHHHHHHhCChhhhhhhhHHHHHHHhhcch--------hHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccc----c
Confidence 3455566778889999999999999999987531 1255566665543 56789999986543321 0
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccchhhhhhccccccccccc
Q 001139 688 RSRNSFVVDMDKKLAAENLLEELSSYHGAIIRQMKQMVDVYIKLAELET--RREDTNKRIQLPREIRCLRQLELVPVVTA 765 (1143)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~~~~~~~~~~~~~l~~l~~~p~~t~ 765 (1143)
+.........-....+.|++.+.....++...-..|++.+..+...-. .+. ..++..+.+.+.+ +++.| -.
T Consensus 1419 -~~~~~~~~~~l~~~~e~i~~~~s~~a~df~~rEf~ff~~vT~ISg~l~P~~k~-~erk~~i~~~l~k---ik~~~--~~ 1491 (1803)
T KOG0902|consen 1419 -AIVKADIGEILDRVREEITGSLSGPARDFYEREFDFFNKVTSISGKLKPYPKG-DERKKAILEELSK---IKVQP--GC 1491 (1803)
T ss_pred -cccchhHHHHHHHHHHHHHhcCCchhhHHHHHHhHHHHHhhhccceeecCCCc-HHHHHHHHHHHHh---hcccC--ce
Confidence 110000000001122344444444344444444555555555543211 010 1122223333333 23333 12
Q ss_pred ccCCCCCC-----CcCCC-------CcCccccccceEEEecCCCCceEEEEEcCCC----------CeeeEEeecCCcch
Q 001139 766 TVPIDCTC-----QYNEG-------SFPYFKGLAESVMVMNGINAPKVVECFGSDG----------HKYRQLAKSGNDDL 823 (1143)
Q Consensus 766 ~lp~~~~~-----~~~~~-------~~~~i~~~~~~~~v~~s~~~Pk~i~~~gsdG----------~~y~~l~K~g~ddl 823 (1143)
-+|..|+. ++..| ..|+++.|. |- | ...|| +....++|.| ||.
T Consensus 1492 YlPs~P~~~v~~i~~~Sg~plQS~aK~PfmatF~----vk-------r---~~~~g~~~~~k~~~~~WQa~IFKvG-DDc 1556 (1803)
T KOG0902|consen 1492 YLPSNPDAVVLDIDYKSGTPLQSAAKAPFMATFK----VK-------R---LEKDGLQCRSKSQKISWQAAIFKVG-DDC 1556 (1803)
T ss_pred ecCCCCCceEEEeecCCCccchhhccCCeeEEEe----ee-------e---ccCCcccccccccchhhhhhhhhcC-chH
Confidence 23433332 11111 234444332 20 0 11232 1123689987 999
Q ss_pred hhhHHHHHHHHHHHHHHhcCccccccceeeeeceEEEcCCCCceeEecCCCcchHHHhhhhccCCCCCCCCCCCcchhHH
Q 001139 824 RQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLK 903 (1143)
Q Consensus 824 R~D~r~~Ql~~~~N~ll~~~~et~~r~L~i~~y~Vipls~~~gliE~v~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~ 903 (1143)
|||....|++.++..+|+.-. .++.+.+|+|+|.+|.||+||.|||+.+-+.+=. +..
T Consensus 1557 RQD~LaLQiislf~~if~~~g----Ld~~lfPYrV~aT~pGcGVIEviPn~~SRdqlGr--~t~---------------- 1614 (1803)
T KOG0902|consen 1557 RQDMLALQIISLFKNIFQLVG----LDLYLFPYRVVATAPGCGVIEVIPNSKSRDQLGR--ETD---------------- 1614 (1803)
T ss_pred HHHHHHHHHHHHHHHHHHHcC----CceEEeeeeeeccCCCCceEEeCCCCccHHHhcc--ccc----------------
Confidence 999999999999999999876 8999999999999999999999999999766411 000
Q ss_pred HHhhccchHhHHHHHHHHHHhhhhhHHHHHHHhcCC--chHHHHHHHHHHHhhhhHHHHHHhhccCCCCCCceEEecCCC
Q 001139 904 CREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQ--PAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATA 981 (1143)
Q Consensus 904 ~~~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~~~~--~~~w~~~r~~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG 981 (1143)
.=|.+||..+|.+ +..|.++|.||.+|+|+||+++|.|.+.|||.+||||| .-|
T Consensus 1615 -----------------------~glyeyF~~~~G~~~s~~fq~Ar~NF~~S~A~Ysv~s~lLq~KDRHNGNim~D-d~G 1670 (1803)
T KOG0902|consen 1615 -----------------------NGLYEYFTRKYGDESSEAFQTARYNFVRSMAGYSVLSYLLQIKDRHNGNIMID-DQG 1670 (1803)
T ss_pred -----------------------ccHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHcccccccCCceeEc-cCC
Confidence 0156778888864 67999999999999999999999999999999999999 599
Q ss_pred eEEEeecchhhccccCC-CCCCCCCccccHHHHhhhccccc---ccchHHHHHHHHHHHhhChHHHHHHHHHHccCCccc
Q 001139 982 EVVHIDLGVAFEQGLML-KTPERVPFRLTRDIIDGMGVTGV---EGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYK 1057 (1143)
Q Consensus 982 ~v~hiDfg~~f~~~~~l-~~pE~VPFRLT~~i~~~~g~~g~---eG~F~~~~~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~ 1057 (1143)
+++|||||++|+..+.- -.-|. ||+||.+|+..||+.-- ...|...|...+-+.|.+.+.|.+..+.|+...|.+
T Consensus 1671 ~~iHIDFGf~~e~sPGgnl~fE~-~fKLt~Em~~~mgG~~~~~~f~~f~elcVk~yLA~R~~~~~iv~~V~~mldsgLPC 1749 (1803)
T KOG0902|consen 1671 HIIHIDFGFMFESSPGGNLGFEP-PFKLTKEMVMLMGGKMEAKPFKWFQELCVKGYLAARPYMDAIVSLVQSMLDSGLPC 1749 (1803)
T ss_pred CEEEEeeeeEEecCCCCccCcCC-CccchHHHHHHhCCCCCCCcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhcCCCc
Confidence 99999999999987653 45677 99999999999994321 135889999999999999999999999999999999
Q ss_pred cccChhH
Q 001139 1058 WALSPLK 1064 (1143)
Q Consensus 1058 w~~~~~~ 1064 (1143)
+.-.+.+
T Consensus 1750 frg~~i~ 1756 (1803)
T KOG0902|consen 1750 FRGQTIG 1756 (1803)
T ss_pred cCcchHH
Confidence 8654433
No 35
>KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.4e-27 Score=274.50 Aligned_cols=197 Identities=24% Similarity=0.398 Sum_probs=174.0
Q ss_pred CCeeeEEeecCCcchhhhHHHHHHHHHHHHHHhcCccccccceeeeeceEEEcCCCCceeEecCCCcchHHHhhhhccCC
Q 001139 809 GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNG 888 (1143)
Q Consensus 809 G~~y~~l~K~g~ddlR~D~r~~Ql~~~~N~ll~~~~et~~r~L~i~~y~Vipls~~~gliE~v~~~~~l~~il~~~~~~~ 888 (1143)
......|+|.| |||||+....||+..|-.+|...+ -.|+|++|+|+-+|.++||||-|+|+.++|+|-...
T Consensus 585 WdL~SVIVKtG-dDLrQE~fA~Qli~~f~~IW~Eeg----vplWlRpykIlvtss~sGLIEtI~da~SIHsIKk~l---- 655 (847)
T KOG0903|consen 585 WDLRSVIVKTG-DDLRQELFAYQLISAFKDIWQEEG----VPLWLRPYKILVTSSDSGLIETIVDAMSIHSIKKRL---- 655 (847)
T ss_pred cceEEEeeecC-chHHHHHHHHHHHHHHHHHHHHcC----CcceeeeEEEEEEecCccceeeccchhhHHHHHHhc----
Confidence 45667899987 999999999999999999999887 789999999999999999999999999999985421
Q ss_pred CCCCCCCCCcchhHHHHhhccchHhHHHHHHHHHHhhhhhHHHHHHHhc-CCchHHHHHHHHHHHhhhhHHHHHHhhccC
Q 001139 889 GAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERF-LQPAYWFEKRLAYTRSVAASSMVGYIVGLG 967 (1143)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~~-~~~~~w~~~r~~f~~S~A~~Si~~yilglg 967 (1143)
.+. -.+++||...+ ++...|-.+.+||..|+|+||+|||+|.+.
T Consensus 656 --------------------~~~---------------~~l~~F~~~~g~~NS~~yk~AQrNFvqSlagYSLvcYlLQvK 700 (847)
T KOG0903|consen 656 --------------------PNL---------------ASLRHFFAAFGKPNSEKYKSAQRNFVQSLAGYSLVCYLLQVK 700 (847)
T ss_pred --------------------chh---------------hhHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 000 01445555554 356789999999999999999999999999
Q ss_pred CCCCCceEEecCCCeEEEeecchhhccccCCCCCCCCCccccHHHHhhhccccccc----chHHHHHHHHHHHhhChHHH
Q 001139 968 DRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEG----VFRRCCEKTLSVMRTNKEAL 1043 (1143)
Q Consensus 968 DRh~~NIll~~~tG~v~hiDfg~~f~~~~~l~~pE~VPFRLT~~i~~~~g~~g~eG----~F~~~~~~~~~~Lr~~~~~l 1043 (1143)
|||.+|||||. -|+++|||||+.+...+..--.|..||+||.++++.|| |++| .|+..|...+..+|+|.+-|
T Consensus 701 DRHNGNILiD~-EGHIIHIDFGFmLsnsPgnvgFEsAPFKLT~EylEvmg--G~~~d~FdyfK~L~l~gf~a~RKhadrI 777 (847)
T KOG0903|consen 701 DRHNGNILIDE-EGHIIHIDFGFMLSNSPGNVGFESAPFKLTTEYLEVMG--GLDSDMFDYFKSLMLQGFMALRKHADRI 777 (847)
T ss_pred cccCCceEecC-CCCEEEEeeeeEecCCCCCcccccCchhhHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999996 99999999999999998877889999999999999999 7776 58999999999999999999
Q ss_pred HHHHHHHcc
Q 001139 1044 LTIVEVFIH 1052 (1143)
Q Consensus 1044 ~~~L~~f~~ 1052 (1143)
..+.|+|--
T Consensus 778 v~lvEiMq~ 786 (847)
T KOG0903|consen 778 VLLVEIMQD 786 (847)
T ss_pred HHHHHHhhc
Confidence 999999864
No 36
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=99.93 E-value=5e-26 Score=259.95 Aligned_cols=165 Identities=21% Similarity=0.359 Sum_probs=137.5
Q ss_pred CCceEEEEEcCCCCe-----------eeEEeecCCcchhhhHHHHHHHHHHHHHHhcCccccccceeeeeceEEEcCCCC
Q 001139 797 NAPKVVECFGSDGHK-----------YRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSA 865 (1143)
Q Consensus 797 ~~Pk~i~~~gsdG~~-----------y~~l~K~g~ddlR~D~r~~Ql~~~~N~ll~~~~et~~r~L~i~~y~Vipls~~~ 865 (1143)
.+|..+-+...+|.. |.||+|. ||||||+.|.|++++|+.||+++. .+|.+++|+|+|++++.
T Consensus 1026 ~~pv~~p~~~~~gvs~~~~~~~~~q~~~iIyK~--gDLRQDQLVLQmIrLMDrLLKkEn----LDLKLTPYRVLATG~ds 1099 (1374)
T PTZ00303 1026 SAPVTSPVTAVNGVSPESLHDSLPQECMFLYKR--ENVERDQLMCISSRLLQMLLSSEI----GNAEMLDYSVLPLSCDS 1099 (1374)
T ss_pred ccceeeeeeccCCcCccccccccchheeEEEec--CcHHHHHHHHHHHHHHHHHHHhcC----CCccccceEEEeccCCc
Confidence 378888999999988 9999995 699999999999999999999987 89999999999999999
Q ss_pred ceeEecCCCcchHHHhhhhccCCCCCCCCCCCcchhHHHHhhccchHhHHHHHHHHHHhhhhhHHHHHHHhcCCchHHHH
Q 001139 866 GILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFE 945 (1143)
Q Consensus 866 gliE~v~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~~~~~~~w~~ 945 (1143)
|+||+|++. ++.+|... + +.+||. +..+.
T Consensus 1100 GLIEfVps~-tLAsI~~~-----------------------------~---------------Il~YLr--~~~t~---- 1128 (1374)
T PTZ00303 1100 GLIEKAEGR-ELSNLDNM-----------------------------D---------------IASYVL--YRGTR---- 1128 (1374)
T ss_pred ccEEEecch-HHHHhhhh-----------------------------H---------------HHHHHH--hcCcH----
Confidence 999999974 56655310 0 122222 12221
Q ss_pred HHHHHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhccccCCCCCCCCCccccHHHHhhhccc
Q 001139 946 KRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVT 1019 (1143)
Q Consensus 946 ~r~~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~~~~l~~pE~VPFRLT~~i~~~~g~~ 1019 (1143)
...||++|+|.||+++||||+||||++||||+. +|++||||||++|+....-+.+-+-|.|+-.+|+.++|.+
T Consensus 1129 ~~~NFi~S~AGYsViTYILgIgDRHngNILId~-dGhLfHIDFGFILg~rtfkeKl~~s~vR~D~~l~eav~~~ 1201 (1374)
T PTZ00303 1129 SCINFLASAKLFLLLNYIFSIGDRHKGNVLIGT-NGALLHIDFRFIFSEKTFVEKLARSTVRIDDAFLAAVEQC 1201 (1374)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccCCceeEcC-CCCEEEEecceeecCchhhhccCCCceehhHHHHHHHHHH
Confidence 256999999999999999999999999999996 9999999999999977654556677999999998877643
No 37
>PF02260 FATC: FATC domain; InterPro: IPR003152 The FATC domain is found at the C-terminal end of the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding; PDB: 2KIT_A 1W1N_A 2KIO_A.
Probab=99.45 E-value=1.7e-14 Score=104.45 Aligned_cols=32 Identities=44% Similarity=0.794 Sum_probs=27.8
Q ss_pred ccCHHHHHHHHHHHccChhhhHhhCcccccCC
Q 001139 1112 MRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL 1143 (1143)
Q Consensus 1112 ~~sv~~~V~~LI~~Atd~~nL~~m~~gW~pwl 1143 (1143)
++||++||++||++|||++|||+||+||+|||
T Consensus 2 ~lsv~~qV~~LI~~At~~~nLa~my~GW~pw~ 33 (33)
T PF02260_consen 2 PLSVEQQVDELISEATDPENLARMYIGWMPWW 33 (33)
T ss_dssp -S-STHHHHHHHHHHHHHHHHHHHCTSS-TT-
T ss_pred CCCHHHHHHHHHHHHcCHHHHHHHhcchhccC
Confidence 68999999999999999999999999999997
No 38
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.87 E-value=0.16 Score=66.27 Aligned_cols=60 Identities=17% Similarity=-0.073 Sum_probs=37.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001139 362 HLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYIS 429 (1143)
Q Consensus 362 ~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~ 429 (1143)
.|...+.+....|++..|...+.++..+... .....+..|..+|+.|+...|+.+++.++
T Consensus 839 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 839 ILDTLGWLLVEKGEADRALPLLRKAVNIAPE--------AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3455666677777777777777666443211 11334566777777777777777776654
No 39
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.48 E-value=3.7e-05 Score=102.53 Aligned_cols=233 Identities=9% Similarity=-0.092 Sum_probs=161.8
Q ss_pred cCCCCceEEEEEcCCCCeeeEEeecCCcchhhhHHHHHHHHHHHHHHhcCccccccceeeeeceEEEcCCCCceeEecCC
Q 001139 794 NGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDG 873 (1143)
Q Consensus 794 ~s~~~Pk~i~~~gsdG~~y~~l~K~g~ddlR~D~r~~Ql~~~~N~ll~~~~et~~r~L~i~~y~Vipls~~~gliE~v~~ 873 (1143)
.+...|+..+..++.+...+...| +.+++|+++..++. +...++.|++.|-..+|+++++....+|-+|+.|
T Consensus 2173 ~~~~~~~~sse~et~~~l~k~~~~-~~~~~~er~~q~~~-------~~~~~~~rq~~lDe~~l~~l~~~r~~fL~~Alt~ 2244 (2806)
T KOG0892|consen 2173 QEDEERRSSSEFETLKDLQKLERS-TVEASNEREEQMRK-------NHHVRVQRQLILDEEELLALSEDRSKFLTLALTN 2244 (2806)
T ss_pred hhHHHHHhHHHHhhHHHHHHHHHh-hhhhhHHHHHHHHH-------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Confidence 555667888888888876665555 67999999988876 2333445567788999999999999999999998
Q ss_pred CcchHHHhhhhccCCCCCCCCCCCcchhHHHHhhccchH--hHH-HHHHHH----HHhhhhhHHHHHHH---hcCCchHH
Q 001139 874 TVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVK--DKR-IAFQEV----CENFRPVLHYFFLE---RFLQPAYW 943 (1143)
Q Consensus 874 ~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~k~-~~f~~i----~~~~~pvl~~~~~~---~~~~~~~w 943 (1143)
+...-..-.. |. .++-+..|---.++.. +.. .+..+| +-+|.|++.++.-+ .+.++-.|
T Consensus 2245 Yl~cl~~~~~----------~D-~~~i~R~cslWfsns~~~evn~~mk~~i~~ipsyKFip~~yQlAaRl~~~~~~~fq~ 2313 (2806)
T KOG0892|consen 2245 YLNCLSESDE----------YD-VDLIFRCCSLWFSNSHLKEVNNSLKHEIQTVPSYKFIPLVYQLAARLGNSENNSFQK 2313 (2806)
T ss_pred HHHHHhhccc----------cc-HHHHHHHhhhhccccchHHHHHHHHHHhccCCcchhHHHHHHHHHHhccccCchHHH
Confidence 7765433221 10 0122222211112111 111 122222 34677766655322 35567899
Q ss_pred HHHHHHHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhccccCCCCCCCCCccccHHHHhhhccccccc
Q 001139 944 FEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEG 1023 (1143)
Q Consensus 944 ~~~r~~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~~~~l~~pE~VPFRLT~~i~~~~g~~g~eG 1023 (1143)
...+..+..+.+.-....|+|+.+++|--+. .-+-.|.+ | ++.+++||++|+...++++++.++.+
T Consensus 2314 ~L~~Li~r~~~dhPyhtly~L~~L~~~~rd~-----e~~n~sr~-------s--l~~~rki~a~l~~~~v~~~~~~~v~~ 2379 (2806)
T KOG0892|consen 2314 SLTSLIYRVGRDHPYHTLYQLLSLVNAVRDN-----EDENRSRG-------S--IDRDRKIAAELDLCDVNQGAGNMVRQ 2379 (2806)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHhcCcCh-----hhhhhccc-------c--cchhHHHHHHHhhhHhhccchhHHHH
Confidence 9999999999999999999999998887661 11112222 2 67899999999999999999999999
Q ss_pred chHHHHHHHHHHHhhChHHHHHHHHHHccCCcccccc
Q 001139 1024 VFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1060 (1143)
Q Consensus 1024 ~F~~~~~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~w~~ 1060 (1143)
+++.|+.-+.-+- -......++......++...|..
T Consensus 2380 v~~lc~~yI~lAn-l~~~q~~t~~k~v~~p~~~~~~K 2415 (2806)
T KOG0892|consen 2380 LECLCEAYISLAN-LKTSQNDTTSKLVRLPGYQWFLK 2415 (2806)
T ss_pred HHHHHHHHHHHhc-CcccccchhhhhhcCccccHHHh
Confidence 9999998887776 55566777788777888877764
No 40
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.32 E-value=5.9 Score=51.54 Aligned_cols=334 Identities=10% Similarity=0.002 Sum_probs=168.6
Q ss_pred HHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c----
Q 001139 16 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H---- 86 (1143)
Q Consensus 16 ~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~---- 86 (1143)
..++....+.+-+.+|+-.++...... +..+.....+..+|...+++|.+..+... +
T Consensus 435 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 500 (899)
T TIGR02917 435 LLLILSYLRSGQFDKALAAAKKLEKKQ--------------PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFP 500 (899)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhC--------------CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHH
Confidence 356778888999999999998764321 11244566788888888888877766431 1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhh
Q 001139 87 KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMH 166 (1143)
Q Consensus 87 ~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~ 166 (1143)
.....+.-|...|++++|...|+..++..|. +......+.+++...|.++
T Consensus 501 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~------------------------------~~~~~~~l~~~~~~~~~~~ 550 (899)
T TIGR02917 501 AAANLARIDIQEGNPDDAIQRFEKVLTIDPK------------------------------NLRAILALAGLYLRTGNEE 550 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC------------------------------cHHHHHHHHHHHHHcCCHH
Confidence 2345677888899999999999998876554 1234456667777788777
Q ss_pred HHHHHHhhhccccCCCCCCcchhHHHHHHHHcCCCCCCCcccCCCCCCCCCCCccchhhhhHHHHHHHHhcCChHHHHHH
Q 001139 167 VLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRK 246 (1143)
Q Consensus 167 ~l~~~~~~l~~~~~~~~~~~~~~~~~~eaAWrl~~Wd~~~~~~~~~~~~~~~~~~~~f~~~l~~~L~al~~~d~~~~~~~ 246 (1143)
....+.+....... .............-+.|+++...... ...... .+........+..+ ....|+.+.+...
T Consensus 551 ~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~-~~~~~~-~~~~~~~~~~l~~~--~~~~~~~~~A~~~ 623 (899)
T TIGR02917 551 EAVAWLEKAAELNP---QEIEPALALAQYYLGKGQLKKALAIL-NEAADA-APDSPEAWLMLGRA--QLAAGDLNKAVSS 623 (899)
T ss_pred HHHHHHHHHHHhCc---cchhHHHHHHHHHHHCCCHHHHHHHH-HHHHHc-CCCCHHHHHHHHHH--HHHcCCHHHHHHH
Confidence 76555543322211 11111112334444566665432211 000000 01111111122222 3356777777777
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHhhhhccCCccccccccccccCCCCcccchhhhHHHHHH
Q 001139 247 LKHSKQELVLSVACASEESTEYIYSAIVK-LQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTEW 325 (1143)
Q Consensus 247 l~~aR~~l~~~Ls~~~~ES~~~~y~~l~~-Lq~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W 325 (1143)
.+++... .....+.+ ..+.. +..+.+.+++.....+.. .. .| ... ..|
T Consensus 624 ~~~~~~~-----~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~--------~~-----~~---~~~------~~~ 672 (899)
T TIGR02917 624 FKKLLAL-----QPDSALAL----LLLADAYAVMKNYAKAITSLKRAL--------EL-----KP---DNT------EAQ 672 (899)
T ss_pred HHHHHHh-----CCCChHHH----HHHHHHHHHcCCHHHHHHHHHHHH--------hc-----CC---CCH------HHH
Confidence 7665321 11111111 11111 122233333332110000 00 00 000 011
Q ss_pred HHHHHh--hhhhhhhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhh
Q 001139 326 SSILKR--TQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWL 403 (1143)
Q Consensus 326 ~~rl~~--~~~~~~~~E~iL~~R~~ll~~l~~~~~~~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~ 403 (1143)
...... ...+++ + -+.+-..+... .......|...+.+..+.|++..|...+.++...... . .
T Consensus 673 ~~l~~~~~~~~~~~--~-A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~--~-------~ 737 (899)
T TIGR02917 673 IGLAQLLLAAKRTE--S-AKKIAKSLQKQ---HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS--S-------Q 737 (899)
T ss_pred HHHHHHHHHcCCHH--H-HHHHHHHHHhh---CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--c-------h
Confidence 111111 111111 1 11111122211 1112334555678888899999999888877544211 1 2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhccCCCchhHHHHHhhhhH
Q 001139 404 GRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWL 449 (1143)
Q Consensus 404 ~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a~~~~llg~Wl 449 (1143)
..+..+.++...|+...|+..++.++...+.. ..++..+|...
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~ 780 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTHPND---AVLRTALAELY 780 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHH
Confidence 23557888889999999999998887654432 33444444433
No 41
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=96.29 E-value=0.02 Score=59.97 Aligned_cols=98 Identities=14% Similarity=0.174 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhccCCCcchhhHHHHHhhhccCCC------------cHHHHHHHHHhhcccCccchhHchHHHHhhhCCC
Q 001139 575 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSS------------RQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 642 (1143)
Q Consensus 575 ~~Al~~Yl~sL~~~~~~~~~~~~RllsLWf~~~~------------~~~v~~~l~~~~~~ip~~k~l~~ipQL~srL~~~ 642 (1143)
..|+..|++|+.+++......+..++.-|-..+. +..|.....+.+.+.|...++..+|||+..|..+
T Consensus 43 p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~~~aL~LL~~~~~~~~Vr~yAV~~L~~~~d~~l~~yLpQLVQaLr~E 122 (184)
T smart00145 43 PKALPKFLLSVNWSDADEVAQALSLLKKWAPLDPEDALELLSPKFPDPFVRAYAVERLESASDEELLLYLLQLVQALKYE 122 (184)
T ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCHHHHHHHhCccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcc
Confidence 4689999999999998877778999999987653 4567788889999999999999999999999876
Q ss_pred ccccccccHHHHHHHHHHHHHHhCCh---hhHHHHHhcc
Q 001139 643 KDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLALA 678 (1143)
Q Consensus 643 ~~~~~~~~f~~~L~~ll~~i~~~hP~---~~l~~l~~~~ 678 (1143)
.. ....|..+|++.|...|. +.+|.|.+..
T Consensus 123 ~~------~~~~L~~fLl~ra~~s~~~~~~l~W~L~~e~ 155 (184)
T smart00145 123 PY------LDSALARFLLERALKNQRLGHFFYWYLKSEL 155 (184)
T ss_pred cc------cccHHHHHHHHHHhhCHHHHHHHHHHHHHHc
Confidence 32 125799999999999886 5677776654
No 42
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=95.96 E-value=0.019 Score=59.29 Aligned_cols=98 Identities=15% Similarity=0.213 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhccCCCcchhhHHHHHhhhccCCC------------cHHHHHHHHHhhcccCccchhHchHHHHhhhCCC
Q 001139 575 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSS------------RQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 642 (1143)
Q Consensus 575 ~~Al~~Yl~sL~~~~~~~~~~~~RllsLWf~~~~------------~~~v~~~l~~~~~~ip~~k~l~~ipQL~srL~~~ 642 (1143)
..|+..+++|+.+.+......+..++.-|-..+. +..|.+...+.+.+++...+...+|||+..|.++
T Consensus 38 p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~aLeLL~~~f~d~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE 117 (171)
T cd00872 38 PQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQALELLDCNFPDEHVREFAVRCLEKLSDDELLQYLLQLVQVLKYE 117 (171)
T ss_pred cHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcc
Confidence 4789999999999998888889999999987653 4568888889999999999999999999999986
Q ss_pred ccccccccHHHHHHHHHHHHHHhCCh---hhHHHHHhcc
Q 001139 643 KDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLALA 678 (1143)
Q Consensus 643 ~~~~~~~~f~~~L~~ll~~i~~~hP~---~~l~~l~~~~ 678 (1143)
+. ..+.|..+|++.|...|. +.+|.+.+..
T Consensus 118 ~~------~ds~La~FLl~Ral~n~~igh~lfW~L~~E~ 150 (171)
T cd00872 118 PY------HDSDLVRFLLKRALRNQRIGHFFFWHLRSEM 150 (171)
T ss_pred cc------cCCHHHHHHHHHHhcCHHHHHHHHHHHHHhh
Confidence 42 125799999999999886 4556665543
No 43
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=95.74 E-value=0.044 Score=56.46 Aligned_cols=102 Identities=16% Similarity=0.239 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhccCCCcchhhHHHHHhhhccCCC------------cHHHHHHHHHhhcccCccchhHchHHHHhhhCCC
Q 001139 575 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSS------------RQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 642 (1143)
Q Consensus 575 ~~Al~~Yl~sL~~~~~~~~~~~~RllsLWf~~~~------------~~~v~~~l~~~~~~ip~~k~l~~ipQL~srL~~~ 642 (1143)
..|+..|++|+.+.+......+..++.-|-..+. +..|.....+.+...+...++..+|||+..|..+
T Consensus 45 p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~~~aLeLL~~~f~~~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE 124 (166)
T cd00870 45 KKALTKFLKSVNWSDEQEVKQALELMPKWAKIDIEDALELLSPYFTNPVVRKYAVSRLKLASDEELLLYLLQLVQALKYE 124 (166)
T ss_pred cHHHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHcCccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 4689999999999988777778999999987753 4567888889999999999999999999999987
Q ss_pred cccc-ccccHHHHHHHHHHHHHHhCCh---hhHHHHHh
Q 001139 643 KDAL-GLHNFQFALVSLVKKMAIDHPY---HTIFQLLA 676 (1143)
Q Consensus 643 ~~~~-~~~~f~~~L~~ll~~i~~~hP~---~~l~~l~~ 676 (1143)
.... ......+.|..+|++.|...|. +.+|.+.+
T Consensus 125 ~~~~~~~~~~~s~La~fLl~Ral~s~~ig~~lfW~Lk~ 162 (166)
T cd00870 125 NLDLSPLPRLDSPLADFLIERALKNPKLANFLYWYLKV 162 (166)
T ss_pred ccccccccccccHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 4300 0000236799999999999886 45565543
No 44
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=95.57 E-value=0.061 Score=54.71 Aligned_cols=95 Identities=15% Similarity=0.219 Sum_probs=78.0
Q ss_pred HHHHHHHHHhccCCCcchhhHHHHHhhhccCC------------CcHHHHHHHHHhhcccCccchhHchHHHHhhhCCCc
Q 001139 576 LALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTK 643 (1143)
Q Consensus 576 ~Al~~Yl~sL~~~~~~~~~~~~RllsLWf~~~------------~~~~v~~~l~~~~~~ip~~k~l~~ipQL~srL~~~~ 643 (1143)
.++..+++|+.+.+......+..++.-|-..+ .+..|.....+.+.+.|...+...+|||+.-|..+.
T Consensus 39 ~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~~aL~LL~~~~~~~~vr~yAv~~L~~~~~~~l~~ylpQLVQaLkye~ 118 (152)
T cd00864 39 KALPKLLKSVNWNDDEEVSELYQLLKWWAPLSPEDALELLSPKYPDPVVRQYAVRVLESASDDELLLYLPQLVQALKYEP 118 (152)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCHHHHHHHcCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence 68899999999988877788889999997664 245677888899999999999999999999998764
Q ss_pred cccccccHHHHHHHHHHHHHHhCCh---hhHHHHHh
Q 001139 644 DALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLA 676 (1143)
Q Consensus 644 ~~~~~~~f~~~L~~ll~~i~~~hP~---~~l~~l~~ 676 (1143)
. ....|..+|++.|...|. +.+|.+.+
T Consensus 119 ~------~~~~L~~fLl~ra~~s~~~~~~l~W~L~~ 148 (152)
T cd00864 119 Y------LDSYLARFLLERALKSQRLGHQLYWNLKS 148 (152)
T ss_pred c------CCCHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 2 125799999999999886 45666654
No 45
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=94.84 E-value=4.2 Score=51.75 Aligned_cols=67 Identities=16% Similarity=-0.007 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001139 359 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 433 (1143)
Q Consensus 359 ~~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~ 433 (1143)
....|...+.+..+.|+++.|...+.++..+.. ....+..-.+.++...|+...|+..++.++...+
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P--------~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P 349 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHP--------DLPYVRAMYARALRQVGQYTAASDEFVQLAREKG 349 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 355677889999999999999999888765531 1123445689999999999999999988876543
No 46
>PLN03218 maturation of RBCL 1; Provisional
Probab=94.18 E-value=7.5 Score=51.96 Aligned_cols=87 Identities=16% Similarity=0.256 Sum_probs=54.3
Q ss_pred chHHHHHHHHHhhCCChhhHhhcccc-------c---chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCC
Q 001139 60 PRHIEILVSAVTQINEPDSLYGIIQS-------H---KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSP 129 (1143)
Q Consensus 60 ~~~~e~L~~iY~~L~epD~~~Gi~~~-------~---~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~ 129 (1143)
...+..|+..|.+.++.|.+..+... + +....|.-|-+.|++++|+..|+...+.+-.
T Consensus 472 ~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~------------ 539 (1060)
T PLN03218 472 CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK------------ 539 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC------------
Confidence 34567777888888887777666431 1 2356777788888888888887765443211
Q ss_pred CCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHHHHHHhhh
Q 001139 130 HGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGL 175 (1143)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~~~~~~l 175 (1143)
| +...+..++.++-..|.++.+....+.+
T Consensus 540 ---P--------------D~vTYnsLI~a~~k~G~~deA~~lf~eM 568 (1060)
T PLN03218 540 ---P--------------DRVVFNALISACGQSGAVDRAFDVLAEM 568 (1060)
T ss_pred ---C--------------CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1 2234566777777777766655544433
No 47
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=94.06 E-value=0.17 Score=52.15 Aligned_cols=97 Identities=14% Similarity=0.097 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhc-cCCCcchhhHHHHHhhhccCCC------------cHHHHHHHHHhhcccCccchhHchHHHHhhhCC
Q 001139 575 GLALEGYKRCLV-IGDKYDVRVVFRLVSLWFSLSS------------RQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGS 641 (1143)
Q Consensus 575 ~~Al~~Yl~sL~-~~~~~~~~~~~RllsLWf~~~~------------~~~v~~~l~~~~~~ip~~k~l~~ipQL~srL~~ 641 (1143)
..|+..|++|+. ++++ ....+..++.-|-..+. +..|.....+.+.+.+....+..+|||+.-|.+
T Consensus 38 p~aLp~~L~s~~~w~~~-~~~e~~~LL~~W~p~~p~~ALeLL~~~f~d~~VR~yAV~~L~~~~ddeL~~yLpQLVQaLky 116 (169)
T cd00869 38 PNALPLVLASAPSWDWA-NLMDVYQLLHQWAPLRPLIALELLLPKFPDQEVRAHAVQWLARLSNDELLDYLPQLVQALKF 116 (169)
T ss_pred cHHHHHHHHhcccCcHH-HHHHHHHHHhCCCCCCHHHHHHHcCCcCCChHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc
Confidence 478999999874 5544 34557889999987653 456888888999999999999999999999998
Q ss_pred CccccccccHHHHHHHHHHHHHHhCCh---hhHHHHHhcc
Q 001139 642 TKDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLALA 678 (1143)
Q Consensus 642 ~~~~~~~~~f~~~L~~ll~~i~~~hP~---~~l~~l~~~~ 678 (1143)
+... .+.|..+|++.|...|. +.+|.+.+..
T Consensus 117 E~~~------~s~L~~FLl~RAl~n~~i~h~lfW~Lk~e~ 150 (169)
T cd00869 117 ELYL------KSALVRFLLSRSLVSLRFAHELYWLLKDAL 150 (169)
T ss_pred cccC------cChHHHHHHHHHhcCHHHHHHHHHHhHHHc
Confidence 7421 25699999999998876 5667776543
No 48
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=93.94 E-value=0.097 Score=55.05 Aligned_cols=97 Identities=15% Similarity=0.181 Sum_probs=76.5
Q ss_pred HHHHHHHHHhccCCCcchhhHHHHHhhhccCC------------CcHHHHHHHHHhhcccCccchhHchHHHHhhhCCCc
Q 001139 576 LALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTK 643 (1143)
Q Consensus 576 ~Al~~Yl~sL~~~~~~~~~~~~RllsLWf~~~------------~~~~v~~~l~~~~~~ip~~k~l~~ipQL~srL~~~~ 643 (1143)
.|+..+++|+.+.+......+..++.-|=..+ .++.|.....+.+.+.|...++..+|||+.-|..+.
T Consensus 45 ~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~AL~LL~~~f~~~~VR~yAv~~L~~~~d~~l~~yLpQLVQaLr~e~ 124 (184)
T PF00613_consen 45 EALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPEDALELLSPNFPDPFVRQYAVRRLESLSDEELLFYLPQLVQALRYEP 124 (184)
T ss_dssp GGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHHHHHCTSTT---HHHHHHHHHHHCTS-HHHHHHHHHHHHHHGGGSS
T ss_pred hHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHHHHHHHHHhhccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHheecc
Confidence 58889999999988776777889999998764 235678888899999999999999999999998763
Q ss_pred cccccccHHHHHHHHHHHHHHhCCh---hhHHHHHhcc
Q 001139 644 DALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLALA 678 (1143)
Q Consensus 644 ~~~~~~~f~~~L~~ll~~i~~~hP~---~~l~~l~~~~ 678 (1143)
.. .+.|..+|++.|...|. +.+|.|.+..
T Consensus 125 ~~------~s~L~~fLl~ra~~s~~ia~~l~W~L~~e~ 156 (184)
T PF00613_consen 125 YH------DSPLARFLLRRALKSPRIAHQLFWYLKAEL 156 (184)
T ss_dssp SS------S-HHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cc------ccHHHHHHHHHHHhCHHHHHHHHHHHHHhc
Confidence 21 16799999999999886 4667776654
No 49
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=93.52 E-value=8.8 Score=48.88 Aligned_cols=326 Identities=9% Similarity=-0.055 Sum_probs=166.5
Q ss_pred CHHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c--
Q 001139 14 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H-- 86 (1143)
Q Consensus 14 d~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~-- 86 (1143)
+...++.+.++-|.+..|+-.++...... +..++.+..|.-.....+++|.+.-.... +
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--------------p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~ 109 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA--------------KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQ 109 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC--------------CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC
Confidence 45577888888888888888888754321 12244555666666677777776665421 1
Q ss_pred --chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhch
Q 001139 87 --KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGC 164 (1143)
Q Consensus 87 --~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~ 164 (1143)
.......-|...|++++|...|+.++...|+ +...+..+.+++..+|.
T Consensus 110 ~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~------------------------------~~~a~~~la~~l~~~g~ 159 (656)
T PRK15174 110 PEDVLLVASVLLKSKQYATVADLAEQAWLAFSG------------------------------NSQIFALHLRTLVLMDK 159 (656)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------------------cHHHHHHHHHHHHHCCC
Confidence 1345666788889999999999888876554 12345667778888888
Q ss_pred hhHHHHHHhhhccccCCCCCCcchhHHHHHHHHcCCCCCCCcccCCCCCCCCCCCccchhhhhHHHHHHHHhcCChHHHH
Q 001139 165 MHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFY 244 (1143)
Q Consensus 165 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~eaAWrl~~Wd~~~~~~~~~~~~~~~~~~~~f~~~l~~~L~al~~~d~~~~~ 244 (1143)
.+......+.+....+ . .+... ...-+.-+.|+++.-.... .........+.......+..+ ....|+.+++.
T Consensus 160 ~~eA~~~~~~~~~~~P--~-~~~a~-~~~~~l~~~g~~~eA~~~~-~~~l~~~~~~~~~~~~~l~~~--l~~~g~~~eA~ 232 (656)
T PRK15174 160 ELQAISLARTQAQEVP--P-RGDMI-ATCLSFLNKSRLPEDHDLA-RALLPFFALERQESAGLAVDT--LCAVGKYQEAI 232 (656)
T ss_pred hHHHHHHHHHHHHhCC--C-CHHHH-HHHHHHHHcCCHHHHHHHH-HHHHhcCCCcchhHHHHHHHH--HHHCCCHHHHH
Confidence 7776555443332221 1 11111 1122345667776533211 000000000111111111111 23567888888
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH-----HHHHHHHHHHHhhhhccCCccccccccccccCCCCcccchhhh
Q 001139 245 RKLKHSKQELVLSVACASEESTEYIYSAIVKL-----QILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLS 319 (1143)
Q Consensus 245 ~~l~~aR~~l~~~Ls~~~~ES~~~~y~~l~~L-----q~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (1143)
..++++...- .. ..........+|-..-+. +.+..++.+.++. | ....
T Consensus 233 ~~~~~al~~~-p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--------------------P---~~~~-- 285 (656)
T PRK15174 233 QTGESALARG-LD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--------------------S---DNVR-- 285 (656)
T ss_pred HHHHHHHhcC-CC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--------------------C---CCHH--
Confidence 8888775321 00 000000001111110011 1333344443311 0 0000
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCc
Q 001139 320 WLNTEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCST 399 (1143)
Q Consensus 320 ~l~~~W~~rl~~~~~~~~~~E~iL~~R~~ll~~l~~~~~~~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~ 399 (1143)
........+. -+.++ -+.+-.+++.+ .. .......+...+.+..+.|+++.|...+.++.... |
T Consensus 286 -a~~~lg~~l~-~~g~~--~eA~~~l~~al-~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--------P 349 (656)
T PRK15174 286 -IVTLYADALI-RTGQN--EKAIPLLQQSL-AT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--------G 349 (656)
T ss_pred -HHHHHHHHHH-HCCCH--HHHHHHHHHHH-Hh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------c
Confidence 1111111111 11122 23333344322 22 11223446667889999999999999987775432 1
Q ss_pred hhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001139 400 VYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 433 (1143)
Q Consensus 400 ~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~ 433 (1143)
....+..-.|.++...|+.+.|+..++..+...+
T Consensus 350 ~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 350 VTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 1112234457889999999999999988776543
No 50
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=92.79 E-value=13 Score=50.91 Aligned_cols=114 Identities=12% Similarity=0.010 Sum_probs=79.6
Q ss_pred HHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----cch----
Q 001139 18 VAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----HKL---- 88 (1143)
Q Consensus 18 lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~~l---- 88 (1143)
.|.+...-|-|..|+-+++..+... +..+...-.|-.+|...++.|.+...... +.-
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~--------------P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~ 340 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRAN--------------PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRD 340 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchh
Confidence 3666777788888888887655321 12345667788999999999988776431 110
Q ss_pred --------------hhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhh
Q 001139 89 --------------SSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKG 154 (1143)
Q Consensus 89 --------------~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 154 (1143)
..+...+...|++++|..+|+.+++..|. +...+.+
T Consensus 341 ~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~------------------------------~~~a~~~ 390 (1157)
T PRK11447 341 KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT------------------------------DSYAVLG 390 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------------------------------CHHHHHH
Confidence 11234567899999999999999987665 1234567
Q ss_pred HHHHHHhhchhhHHHHHHhhh
Q 001139 155 LMRSLQQVGCMHVLDMYCKGL 175 (1143)
Q Consensus 155 llrcL~~LG~~~~l~~~~~~l 175 (1143)
+-.++...|.++....+.+..
T Consensus 391 Lg~~~~~~g~~~eA~~~y~~a 411 (1157)
T PRK11447 391 LGDVAMARKDYAAAERYYQQA 411 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 788899999988886666543
No 51
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=92.42 E-value=15 Score=43.65 Aligned_cols=60 Identities=13% Similarity=-0.149 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHH
Q 001139 360 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYI 428 (1143)
Q Consensus 360 ~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l 428 (1143)
....+-.+++|-..|.+..|...+..+.... |. ....+..|.++++.|+++.|.++-+.-
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--------P~-~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQR--------PD-AYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3446668999999999999999998875542 11 123478999999999999999877644
No 52
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=91.96 E-value=15 Score=47.21 Aligned_cols=339 Identities=11% Similarity=0.044 Sum_probs=170.9
Q ss_pred cCHHHHHHHHHHhchhHHHhhhhhhhhhhhhccc--cC--------CCCCC------------CcCCCcchHHHHHHHHH
Q 001139 13 VDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSL--TL--------GSPDF------------SHLETLPRHIEILVSAV 70 (1143)
Q Consensus 13 Id~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~--~~--------~~~~~------------~~~~~~~~~~e~L~~iY 70 (1143)
+-|..+..+-.++|.+..|+-.++...+.....- +. +.... ............|+..|
T Consensus 190 ~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y 269 (697)
T PLN03081 190 ASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMY 269 (697)
T ss_pred eeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHH
Confidence 3477788888889999999988886542210000 00 00000 00011233467899999
Q ss_pred hhCCChhhHhhcccc---c---chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchh
Q 001139 71 TQINEPDSLYGIIQS---H---KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSEN 144 (1143)
Q Consensus 71 ~~L~epD~~~Gi~~~---~---~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (1143)
.+-++.|.+..+... + +.+..+.-|.+.|++++|+..|+.-.+.+-. |
T Consensus 270 ~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~---------------p----------- 323 (697)
T PLN03081 270 SKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS---------------I----------- 323 (697)
T ss_pred HHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC---------------C-----------
Confidence 999999999888653 1 3468899999999999999999876543211 1
Q ss_pred hhhhcchhhhHHHHHHhhchhhHHHHHHhhhccccCCCCCCcchhHHHHHHHHcCCCCCCCcccCCCCCCCCCCCccchh
Q 001139 145 EMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHF 224 (1143)
Q Consensus 145 ~~~~~~~~~gllrcL~~LG~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~eaAWrl~~Wd~~~~~~~~~~~~~~~~~~~~f 224 (1143)
+...+..+++++-.+|..+........+..... ..+....-....+-.+.|+++..... ..... .++...|
T Consensus 324 ---d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~--~~d~~~~~~Li~~y~k~G~~~~A~~v-f~~m~---~~d~~t~ 394 (697)
T PLN03081 324 ---DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF--PLDIVANTALVDLYSKWGRMEDARNV-FDRMP---RKNLISW 394 (697)
T ss_pred ---CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCC--CCCeeehHHHHHHHHHCCCHHHHHHH-HHhCC---CCCeeeH
Confidence 223467788888888887765444333322211 11111112233444555665543221 11111 1223344
Q ss_pred hhhHHHHHHH-HhcCChHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHhhhhccCCccccccc
Q 001139 225 HENLHSCLTA-LREGDSEEFYRKLKHSKQELVLSVACASEESTEYIYSAIVK-LQILCHLGVAWDIRWKSSGESINIYPE 302 (1143)
Q Consensus 225 ~~~l~~~L~a-l~~~d~~~~~~~l~~aR~~l~~~Ls~~~~ES~~~~y~~l~~-Lq~L~ELee~~~~~~~~~~~~~~~~~~ 302 (1143)
+.. +.+ .++|+.+++.+..++.... ....-...|..++. +-..-.++++.++..... .
T Consensus 395 n~l----I~~y~~~G~~~~A~~lf~~M~~~--------g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~--------~ 454 (697)
T PLN03081 395 NAL----IAGYGNHGRGTKAVEMFERMIAE--------GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS--------E 454 (697)
T ss_pred HHH----HHHHHHcCCHHHHHHHHHHHHHh--------CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH--------H
Confidence 432 122 2568888877777654321 11111222333332 111111222222110000 0
Q ss_pred cccccCCCCcccchhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHccCChHHHHHH
Q 001139 303 KQKIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAA 382 (1143)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~l~~~W~~rl~~~~~~~~~~E~iL~~R~~ll~~l~~~~~~~~~wl~~a~laRk~g~~~~A~~a 382 (1143)
. ..+.|....-..+.+...+. ..++-...+ ++-.... ....+|......|++.|+++.|..+
T Consensus 455 ~-----~g~~p~~~~y~~li~~l~r~-----G~~~eA~~~-------~~~~~~~-p~~~~~~~Ll~a~~~~g~~~~a~~~ 516 (697)
T PLN03081 455 N-----HRIKPRAMHYACMIELLGRE-----GLLDEAYAM-------IRRAPFK-PTVNMWAALLTACRIHKNLELGRLA 516 (697)
T ss_pred h-----cCCCCCccchHhHHHHHHhc-----CCHHHHHHH-------HHHCCCC-CCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 0 00001111111121111110 111111111 1111111 1345688888899999999999998
Q ss_pred HHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 001139 383 LHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENY 432 (1143)
Q Consensus 383 L~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~ 432 (1143)
..++..+... . + ....-.+.++=..|+.+.|.++.+.+..+.
T Consensus 517 ~~~l~~~~p~--~---~---~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 517 AEKLYGMGPE--K---L---NNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHhCCCCC--C---C---cchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 8777544321 0 0 112335667778899999999998886543
No 53
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=91.56 E-value=65 Score=44.14 Aligned_cols=65 Identities=15% Similarity=-0.078 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 001139 360 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENY 432 (1143)
Q Consensus 360 ~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~ 432 (1143)
...++..+.+....|++..|...+..+.+... .........|.++=..|+...|+..++.++...
T Consensus 637 ~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p--------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 637 ADARLGLIEVDIAQGDLAAARAQLAKLPATAN--------DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC--------CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 34566677777778888888777766543211 111223445666667788888888887776543
No 54
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=91.31 E-value=35 Score=39.95 Aligned_cols=94 Identities=22% Similarity=0.147 Sum_probs=61.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCCchhHHH
Q 001139 363 LLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVY 442 (1143)
Q Consensus 363 wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a~~~ 442 (1143)
+...+.+..+.|++..|...+.++..+.. +. .. ....++++..+|+...|+..++..+...+ ....+.
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p--~~------~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P---~~~~~~ 319 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEYP--GA------DL-LLALAQLLEEQEGPEAAQALLREQLRRHP---SLRGFH 319 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC--Cc------hH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCc---CHHHHH
Confidence 34456667788999999998888765421 11 12 25688999999999999999998876543 233455
Q ss_pred HHhhhhHHhh---hcCChHHHHHHhhhhh
Q 001139 443 RLVGKWLAES---RSSNSRIILENYLKPA 468 (1143)
Q Consensus 443 ~llg~Wlaes---r~e~~~~I~~~Y~~~a 468 (1143)
.+++.++... +....-.+++..++..
T Consensus 320 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 320 RLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 5666666543 3444445555555544
No 55
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=89.29 E-value=77 Score=40.72 Aligned_cols=55 Identities=9% Similarity=0.079 Sum_probs=41.5
Q ss_pred chHHHHHHHHHhhCCChhhHhhcccc---c---chhhHHHHHHhhCCHHHHHHHHHHHHhh
Q 001139 60 PRHIEILVSAVTQINEPDSLYGIIQS---H---KLSSQIVTLEHEGNWSKALEYYELQVRS 114 (1143)
Q Consensus 60 ~~~~e~L~~iY~~L~epD~~~Gi~~~---~---~l~~~i~~yE~~g~w~~Al~~Ye~~l~~ 114 (1143)
......|+..|.+.++.|.+.-+... + +....+.-|-+.|++++|+..|+...+.
T Consensus 158 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~ 218 (697)
T PLN03081 158 QYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWED 218 (697)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 34567788888888888888777643 1 3467888888888888888888876654
No 56
>PF13575 DUF4135: Domain of unknown function (DUF4135)
Probab=89.23 E-value=3.1 Score=49.05 Aligned_cols=111 Identities=21% Similarity=0.215 Sum_probs=83.9
Q ss_pred CCCCeeeEEeecCCcchhhhHHHHHHHHHHHHHHhcCccccccceeeeeceEEEcCCCCceeEecCCCcchHHHhhhhcc
Q 001139 807 SDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTR 886 (1143)
Q Consensus 807 sdG~~y~~l~K~g~ddlR~D~r~~Ql~~~~N~ll~~~~et~~r~L~i~~y~Vipls~~~gliE~v~~~~~l~~il~~~~~ 886 (1143)
++|. +++.|+ .+++.|..+..|+..+|.-.... .+.++++++++-+..-|-.|||++...-.
T Consensus 68 ~~g~--kivYKP--Rsl~~d~~f~~l~~~ln~~~~~~------~~~l~~~~~l~~g~~YgW~EfI~~~~c~~-------- 129 (370)
T PF13575_consen 68 SSGK--KIVYKP--RSLSIDKAFNDLLEWLNEKNGTP------SLDLPTPKVLDRGDGYGWQEFIEHEPCNS-------- 129 (370)
T ss_pred CCCC--EEEEeC--cccHHHHHHHHHHHHHhhhcccc------ccccccceeeeccCcceeEEEecCCCCCC--------
Confidence 4553 567896 79999999999999999875422 35688889999887789999998522110
Q ss_pred CCCCCCCCCCCcchhHHHHhhccchHhHHHHHHHHHHhhhhhHHHHHHHhcCCchHHHHHHHHHHHhhhhHHHHHHhhcc
Q 001139 887 NGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGL 966 (1143)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~~~~~~~w~~~r~~f~~S~A~~Si~~yilgl 966 (1143)
..+ . .+|=+-++....+.|+||.
T Consensus 130 ------------------------~~e---------------v------------------~~yY~r~G~llal~y~L~~ 152 (370)
T PF13575_consen 130 ------------------------EEE---------------V------------------ERYYYRLGVLLALLYLLNG 152 (370)
T ss_pred ------------------------HHH---------------H------------------HHHHHHHHHHHHHHHHhCC
Confidence 000 0 1244557888889999999
Q ss_pred CCCCCCceEEecCCCeEEEeecchhhcc
Q 001139 967 GDRHAMNILIDQATAEVVHIDLGVAFEQ 994 (1143)
Q Consensus 967 gDRh~~NIll~~~tG~v~hiDfg~~f~~ 994 (1143)
.|=|-+||.-+ -+..|=||+-.+|..
T Consensus 153 ~DlH~ENIIa~--g~~PvlIDlETlf~~ 178 (370)
T PF13575_consen 153 TDLHFENIIAS--GEYPVLIDLETLFHP 178 (370)
T ss_pred CcccccceEEe--CCCcEEEehhhhCCc
Confidence 99999999997 588899999988875
No 57
>PLN03218 maturation of RBCL 1; Provisional
Probab=89.21 E-value=33 Score=46.00 Aligned_cols=295 Identities=12% Similarity=0.132 Sum_probs=153.2
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-------c-
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-------H- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-------~- 86 (1143)
|..|..+..+||.+..|+-.++...+. ...+....+..|+..|.+.++.|.+..+... +
T Consensus 475 ynsLI~~y~k~G~vd~A~~vf~eM~~~-------------Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD 541 (1060)
T PLN03218 475 YTTLISTCAKSGKVDAMFEVFHEMVNA-------------GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD 541 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHc-------------CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC
Confidence 455666777788888877777653211 0112345678999999999999998877532 2
Q ss_pred --chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhch
Q 001139 87 --KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGC 164 (1143)
Q Consensus 87 --~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~ 164 (1143)
.....+.-|-+.|++++|+..|+........ +. | +...+.-++.++-..|.
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g---------i~----P--------------D~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHP---------ID----P--------------DHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC---------CC----C--------------cHHHHHHHHHHHHHCCC
Confidence 3568899999999999999999886543111 00 1 22346678889999999
Q ss_pred hhHHHHHHhhhccccCCCCCCcchhHHHHHHHHcCCCCCCCcccCCCCCC-CCCCCccchhhhhHHHHHHH--HhcCChH
Q 001139 165 MHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFP-SGQNIKSGHFHENLHSCLTA--LREGDSE 241 (1143)
Q Consensus 165 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~eaAWrl~~Wd~~~~~~~~~~~-~~~~~~~~~f~~~l~~~L~a--l~~~d~~ 241 (1143)
++.+..+.+.+..... ..+...-.....+-=+.|+++...... .... .+..++...|+ +|.. .+.|+.+
T Consensus 595 ldeA~elf~~M~e~gi--~p~~~tynsLI~ay~k~G~~deAl~lf-~eM~~~Gv~PD~~Tyn-----sLI~a~~k~G~~e 666 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNI--KGTPEVYTIAVNSCSQKGDWDFALSIY-DDMKKKGVKPDEVFFS-----ALVDVAGHAGDLD 666 (1060)
T ss_pred HHHHHHHHHHHHHcCC--CCChHHHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCCCHHHHH-----HHHHHHHhCCCHH
Confidence 8887766665543321 111111112233344567666432211 0000 11122322333 2222 2567777
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHhhhhccCCccccccccccccCCCCcccchhhhH
Q 001139 242 EFYRKLKHSKQELVLSVACASEESTEYIYSAIVK-LQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSW 320 (1143)
Q Consensus 242 ~~~~~l~~aR~~l~~~Ls~~~~ES~~~~y~~l~~-Lq~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1143)
.+...++..+. .........|..++. +-...+++++.++..... . ..+.++
T Consensus 667 eA~~l~~eM~k--------~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~--------~------~g~~Pd------ 718 (1060)
T PLN03218 667 KAFEILQDARK--------QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK--------S------IKLRPT------ 718 (1060)
T ss_pred HHHHHHHHHHH--------cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH--------H------cCCCCC------
Confidence 77777665432 122222234444443 111222333332211100 0 000011
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHccCChHHHHHHHHHHHhh
Q 001139 321 LNTEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFL 389 (1143)
Q Consensus 321 l~~~W~~rl~~~~~~~~~~E~iL~~R~~ll~~l~~~~~~~~~wl~~a~laRk~g~~~~A~~aL~~l~~l 389 (1143)
..+|...+.+.-..-.+-+.+--++...- .+... ...+|......|.+.|.++.|...+.++...
T Consensus 719 -vvtyN~LI~gy~k~G~~eeAlelf~eM~~--~Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 719 -VSTMNALITALCEGNQLPKALEVLSEMKR--LGLCP-NTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 12466666655433333333222222111 11111 1233444456788899999999988887654
No 58
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=88.42 E-value=1.4 Score=45.71 Aligned_cols=64 Identities=11% Similarity=0.056 Sum_probs=54.1
Q ss_pred cHHHHHHHHHhhcccCccchhHchHHHHhhhCCCccccccccHHHHHHHHHHHHHHhCCh---hhHHHHHhcccc
Q 001139 609 RQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLALANG 680 (1143)
Q Consensus 609 ~~~v~~~l~~~~~~ip~~k~l~~ipQL~srL~~~~~~~~~~~f~~~L~~ll~~i~~~hP~---~~l~~l~~~~~~ 680 (1143)
++.|.....+.+.+.|....+..+|||+.-|..+.. ..|..+|++.|...+. |.+|.+.+....
T Consensus 84 ~~~Vr~yAvr~L~~~~~e~l~~YlpQLVQaLryd~~--------~~l~~FLl~~A~~s~~faHql~W~lkae~~~ 150 (175)
T cd00871 84 HPLVLQYAVRVLESYPVETVFFYIPQIVQALRYDKM--------GYVEEYILETAKRSQLFAHQIIWNMQTNCYK 150 (175)
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccc--------chHHHHHHHHHhhhHHHHHHHHHHHHHhccC
Confidence 567888999999999999999999999999998643 4689999999987664 788988876544
No 59
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=88.10 E-value=23 Score=44.80 Aligned_cols=52 Identities=17% Similarity=0.095 Sum_probs=38.1
Q ss_pred HccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001139 371 RKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISE 430 (1143)
Q Consensus 371 Rk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~ 430 (1143)
+..|++..|...+.++..+.. ....+....|++++.+|+...|+..++..+.
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p--------~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDP--------ECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCC--------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456899999988877655421 1123446789999999999999998876644
No 60
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=86.11 E-value=2.6 Score=41.12 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=43.0
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHHHH
Q 001139 91 QIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDM 170 (1143)
Q Consensus 91 ~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~~ 170 (1143)
....|...|+.++|..+|+.++..+.+ + ....+...++-.+|.++|..+....
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~-------~--------------------~~~~~a~i~lastlr~LG~~deA~~ 59 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLS-------G--------------------ADRRRALIQLASTLRNLGRYDEALA 59 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC-------c--------------------hHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 456788999999999999999886433 0 0123567788899999999888766
Q ss_pred HHhh
Q 001139 171 YCKG 174 (1143)
Q Consensus 171 ~~~~ 174 (1143)
..+.
T Consensus 60 ~L~~ 63 (120)
T PF12688_consen 60 LLEE 63 (120)
T ss_pred HHHH
Confidence 5544
No 61
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=85.46 E-value=1.4 Score=37.64 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=42.8
Q ss_pred hhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHHHHHHhhhc
Q 001139 97 HEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLT 176 (1143)
Q Consensus 97 ~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~~~~~~l~ 176 (1143)
..|+|++|+..|+..++..|+ +.+...++.+|+...|.++....+++.+.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~------------------------------~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD------------------------------NPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT------------------------------SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHHCCC------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 579999999999999998776 34567899999999999999988877655
Q ss_pred cc
Q 001139 177 SW 178 (1143)
Q Consensus 177 ~~ 178 (1143)
..
T Consensus 53 ~~ 54 (68)
T PF14559_consen 53 KQ 54 (68)
T ss_dssp GG
T ss_pred HH
Confidence 44
No 62
>PLN03077 Protein ECB2; Provisional
Probab=82.96 E-value=1.7e+02 Score=38.60 Aligned_cols=26 Identities=8% Similarity=-0.107 Sum_probs=19.7
Q ss_pred cCHHHHHHHHHHhchhHHHhhhhhhh
Q 001139 13 VDYLRVAKSAVICGSYFTSVMYVEHW 38 (1143)
Q Consensus 13 Id~~~lA~aA~~C~ay~~ALly~E~~ 38 (1143)
+-|..+..+-.+.|.+..|+-.++..
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34667778888888888888877754
No 63
>PLN03077 Protein ECB2; Provisional
Probab=81.43 E-value=1.9e+02 Score=38.14 Aligned_cols=338 Identities=11% Similarity=-0.007 Sum_probs=164.1
Q ss_pred cCHHHHHHHHHHhchhHHHhhhhhhhhhhhhcc--cc----------CCCCC----------CCcCCCcchHHHHHHHHH
Q 001139 13 VDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKS--LT----------LGSPD----------FSHLETLPRHIEILVSAV 70 (1143)
Q Consensus 13 Id~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~--~~----------~~~~~----------~~~~~~~~~~~e~L~~iY 70 (1143)
+-|..+-.+-.+.|.+..|+..++.-.+..... .+ .+..+ ..........+..|+..|
T Consensus 254 ~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y 333 (857)
T PLN03077 254 ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY 333 (857)
T ss_pred chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHH
Confidence 446677777888888888888777643211000 00 00000 000112244677888888
Q ss_pred hhCCChhhHhhcccc---c---chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchh
Q 001139 71 TQINEPDSLYGIIQS---H---KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSEN 144 (1143)
Q Consensus 71 ~~L~epD~~~Gi~~~---~---~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (1143)
.+.++.|.+..+... + +.+..+.-|-+.|++++|+..|+...+.+.. |
T Consensus 334 ~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~---------------P----------- 387 (857)
T PLN03077 334 LSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS---------------P----------- 387 (857)
T ss_pred HhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC---------------C-----------
Confidence 888888888887643 1 3467888899999999999998865443211 1
Q ss_pred hhhhcchhhhHHHHHHhhchhhHHHHHHhhhccccCCCCCCcchhHHHHHHHHcCCCCCCCcccCCCCCCCCCCCccchh
Q 001139 145 EMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHF 224 (1143)
Q Consensus 145 ~~~~~~~~~gllrcL~~LG~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~eaAWrl~~Wd~~~~~~~~~~~~~~~~~~~~f 224 (1143)
+......++.++-.+|..+......+-..... ...+......-..+--+.|+++..... ...... .+...|
T Consensus 388 ---d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g--~~~~~~~~n~Li~~y~k~g~~~~A~~v-f~~m~~---~d~vs~ 458 (857)
T PLN03077 388 ---DEITIASVLSACACLGDLDVGVKLHELAERKG--LISYVVVANALIEMYSKCKCIDKALEV-FHNIPE---KDVISW 458 (857)
T ss_pred ---CceeHHHHHHHHhccchHHHHHHHHHHHHHhC--CCcchHHHHHHHHHHHHcCCHHHHHHH-HHhCCC---CCeeeH
Confidence 12345677777777777666544433222111 111111112233455566666643321 111111 122334
Q ss_pred hhhHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccccc
Q 001139 225 HENLHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQ 304 (1143)
Q Consensus 225 ~~~l~~~L~al~~~d~~~~~~~l~~aR~~l~~~Ls~~~~ES~~~~y~~l~~Lq~L~ELee~~~~~~~~~~~~~~~~~~~~ 304 (1143)
+..+ .+ ..++|+..++....++.+.. + .-....|..+-.+..++..+.+-.++.....+..
T Consensus 459 ~~mi-~~--~~~~g~~~eA~~lf~~m~~~----~-~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g----------- 519 (857)
T PLN03077 459 TSII-AG--LRLNNRCFEALIFFRQMLLT----L-KPNSVTLIAALSACARIGALMCGKEIHAHVLRTG----------- 519 (857)
T ss_pred HHHH-HH--HHHCCCHHHHHHHHHHHHhC----C-CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC-----------
Confidence 4321 11 12456666666555544321 1 0011122222233333444444444333111100
Q ss_pred cccCCCCcccchhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHccCChHHHHHHHH
Q 001139 305 KIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALH 384 (1143)
Q Consensus 305 ~~~~~~~~~~~~~~~~l~~~W~~rl~~~~~~~~~~E~iL~~R~~ll~~l~~~~~~~~~wl~~a~laRk~g~~~~A~~aL~ 384 (1143)
.... ..-...|.+.+.+. .+++ +. +. ++.-. +....+|......+-+.|+.+.|...+.
T Consensus 520 -~~~~-----~~~~naLi~~y~k~-----G~~~--~A----~~-~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~ 578 (857)
T PLN03077 520 -IGFD-----GFLPNALLDLYVRC-----GRMN--YA----WN-QFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFN 578 (857)
T ss_pred -CCcc-----ceechHHHHHHHHc-----CCHH--HH----HH-HHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 0000 00011222222211 1111 10 10 11111 1124467777777889999999999998
Q ss_pred HHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 001139 385 ELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENY 432 (1143)
Q Consensus 385 ~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~ 432 (1143)
++...+..|+.. ...-.....-..|..++|+++.+.+....
T Consensus 579 ~M~~~g~~Pd~~-------T~~~ll~a~~~~g~v~ea~~~f~~M~~~~ 619 (857)
T PLN03077 579 RMVESGVNPDEV-------TFISLLCACSRSGMVTQGLEYFHSMEEKY 619 (857)
T ss_pred HHHHcCCCCCcc-------cHHHHHHHHhhcChHHHHHHHHHHHHHHh
Confidence 886543222211 11112334556789999999999887544
No 64
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=81.14 E-value=3.6 Score=35.12 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=42.8
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhc-hhhH
Q 001139 89 SSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVG-CMHV 167 (1143)
Q Consensus 89 ~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG-~~~~ 167 (1143)
......|.++|+|++|+.+|+.+++.+|+ +...+.++-.|+..+| .+..
T Consensus 7 ~~~g~~~~~~~~~~~A~~~~~~ai~~~p~------------------------------~~~~~~~~g~~~~~~~~~~~~ 56 (69)
T PF13414_consen 7 YNLGQIYFQQGDYEEAIEYFEKAIELDPN------------------------------NAEAYYNLGLAYMKLGKDYEE 56 (69)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHSTT------------------------------HHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC------------------------------CHHHHHHHHHHHHHhCccHHH
Confidence 45677889999999999999999998775 3456778888999999 6666
Q ss_pred HHHHH
Q 001139 168 LDMYC 172 (1143)
Q Consensus 168 l~~~~ 172 (1143)
...+.
T Consensus 57 A~~~~ 61 (69)
T PF13414_consen 57 AIEDF 61 (69)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 65
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=80.77 E-value=2.5 Score=47.54 Aligned_cols=57 Identities=16% Similarity=0.114 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhhCCChhhHhhcccc--------c---chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 61 RHIEILVSAVTQINEPDSLYGIIQS--------H---KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 61 ~~~e~L~~iY~~L~epD~~~Gi~~~--------~---~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
..+..++.+|...++.+.+..+... . .+-..+..|++.|++++|+.+|+.++...|+
T Consensus 111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~ 178 (280)
T PF13429_consen 111 RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD 178 (280)
T ss_dssp -------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT
T ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 3455566667777777766666432 0 1235666777788888888888888777665
No 66
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=80.57 E-value=3.5 Score=34.86 Aligned_cols=54 Identities=20% Similarity=0.246 Sum_probs=43.8
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHHHH
Q 001139 91 QIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDM 170 (1143)
Q Consensus 91 ~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~~ 170 (1143)
++..|...|+|++|..+|+..+...|+ +.+...++-+|+...|.++....
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~------------------------------~~~a~~~lg~~~~~~g~~~~A~~ 52 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD------------------------------NPEAWYLLGRILYQQGRYDEALA 52 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT------------------------------HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC------------------------------CHHHHHHHHHHHHHcCCHHHHHH
Confidence 567889999999999999999998765 35667888899999999888766
Q ss_pred HHhh
Q 001139 171 YCKG 174 (1143)
Q Consensus 171 ~~~~ 174 (1143)
+.+.
T Consensus 53 ~~~~ 56 (65)
T PF13432_consen 53 YYER 56 (65)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 67
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=78.07 E-value=1.6e+02 Score=35.15 Aligned_cols=61 Identities=13% Similarity=-0.033 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHH
Q 001139 361 QHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYI 428 (1143)
Q Consensus 361 ~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l 428 (1143)
......+.++-+.|+++.|...+..+..+...+ .+ ......+.++|..|+.+.|.++-+.-
T Consensus 336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p----~~---~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 336 CINRALGQLLMKHGEFIEAADAFKNVAACKEQL----DA---NDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC----CH---HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445667999999999999999887433332211 11 12346899999999999999887754
No 68
>TIGR02906 spore_CotS spore coat protein, CotS family. Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.
Probab=77.88 E-value=33 Score=38.94 Aligned_cols=29 Identities=28% Similarity=0.149 Sum_probs=24.8
Q ss_pred HHhhccCCCCCCceEEecCCCeEEEeecchh
Q 001139 961 GYIVGLGDRHAMNILIDQATAEVVHIDLGVA 991 (1143)
Q Consensus 961 ~yilglgDRh~~NIll~~~tG~v~hiDfg~~ 991 (1143)
.+.+-=||=|++||+++. |.+.-|||+.+
T Consensus 186 ~~~liHgD~~~~Nil~~~--~~i~lIDfd~~ 214 (313)
T TIGR02906 186 IRGFCHQDYAYHNILLKD--NEVYVIDFDYC 214 (313)
T ss_pred cCceEcCCCCcccEEEeC--CcEEEEECccc
Confidence 466788999999999995 78999999954
No 69
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=76.05 E-value=3.9 Score=30.47 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=20.9
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHhh
Q 001139 89 SSQIVTLEHEGNWSKALEYYELQVRS 114 (1143)
Q Consensus 89 ~~~i~~yE~~g~w~~Al~~Ye~~l~~ 114 (1143)
.....-|.+.|+|++|..+|+.++..
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35677899999999999999996644
No 70
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=74.65 E-value=13 Score=31.23 Aligned_cols=60 Identities=17% Similarity=-0.027 Sum_probs=46.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001139 366 SASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 433 (1143)
Q Consensus 366 ~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~ 433 (1143)
.|...-+.|++..|...+.++.... |....+.+..+.+++.+|+...|+..++.++...+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~--------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD--------PDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS--------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4677788999999999998875321 33334568899999999999999999998876554
No 71
>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro
Probab=72.07 E-value=4.4 Score=42.72 Aligned_cols=25 Identities=36% Similarity=0.432 Sum_probs=22.5
Q ss_pred CCCCCCceEEecCCCeEEEeecchhhc
Q 001139 967 GDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 967 gDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
+|=||+|||++ +|++.=||||.+-.
T Consensus 142 rDlkP~NIll~--~~~~~liDFG~a~~ 166 (190)
T cd05145 142 GDLSEYNILYH--DGKPYIIDVSQAVE 166 (190)
T ss_pred CCCChhhEEEE--CCCEEEEEccccee
Confidence 79999999998 89999999998653
No 72
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=71.32 E-value=8.6 Score=32.60 Aligned_cols=56 Identities=20% Similarity=-0.011 Sum_probs=42.9
Q ss_pred HccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC
Q 001139 371 RKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYES 434 (1143)
Q Consensus 371 Rk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~ 434 (1143)
-+.|+++.|...+.++.... |....+.+..|+++..+|+.+.|..+++.+....+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 46889999999988876542 222345689999999999999999999988776543
No 73
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=69.14 E-value=18 Score=40.58 Aligned_cols=110 Identities=15% Similarity=0.076 Sum_probs=69.2
Q ss_pred HHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhccc--------ccc
Q 001139 16 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQ--------SHK 87 (1143)
Q Consensus 16 ~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~--------~~~ 87 (1143)
..+|....+.|-+..|+-+++..++.. +..+.....|.-++-..++.+.+--+.. .+.
T Consensus 150 ~~~a~~~~~~G~~~~A~~~~~~al~~~--------------P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~ 215 (280)
T PF13429_consen 150 LALAEIYEQLGDPDKALRDYRKALELD--------------PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPD 215 (280)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHH---------------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC--------------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHH
Confidence 356777788888888888888766432 1234556677777777788876333321 122
Q ss_pred -hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhh
Q 001139 88 -LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMH 166 (1143)
Q Consensus 88 -l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~ 166 (1143)
....+.-|...|+.++|+.+|+..+...|+ +.........+|...|..+
T Consensus 216 ~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~------------------------------d~~~~~~~a~~l~~~g~~~ 265 (280)
T PF13429_consen 216 LWDALAAAYLQLGRYEEALEYLEKALKLNPD------------------------------DPLWLLAYADALEQAGRKD 265 (280)
T ss_dssp HCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-------------------------------HHHHHHHHHHHT------
T ss_pred HHHHHHHHhcccccccccccccccccccccc------------------------------ccccccccccccccccccc
Confidence 356788999999999999999999887665 3345567778888888766
Q ss_pred HHH
Q 001139 167 VLD 169 (1143)
Q Consensus 167 ~l~ 169 (1143)
...
T Consensus 266 ~A~ 268 (280)
T PF13429_consen 266 EAL 268 (280)
T ss_dssp ---
T ss_pred ccc
Confidence 543
No 74
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=68.90 E-value=51 Score=34.44 Aligned_cols=84 Identities=14% Similarity=0.120 Sum_probs=48.9
Q ss_pred HHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c----
Q 001139 16 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H---- 86 (1143)
Q Consensus 16 ~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~---- 86 (1143)
..+|.....-+-|..|+-+++..+... | ........+..+|...+++|.+...... +
T Consensus 35 ~~la~~~~~~~~~~~A~~~~~~~l~~~--------p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 100 (234)
T TIGR02521 35 VQLALGYLEQGDLEVAKENLDKALEHD--------P------DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGD 100 (234)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--------c------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Confidence 456677777777888887777654221 1 1123344566677777777665554321 1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHh
Q 001139 87 KLSSQIVTLEHEGNWSKALEYYELQVR 113 (1143)
Q Consensus 87 ~l~~~i~~yE~~g~w~~Al~~Ye~~l~ 113 (1143)
.......-|...|++++|+.+|+..++
T Consensus 101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 101 VLNNYGTFLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 122345556667777777777777665
No 75
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=68.40 E-value=52 Score=34.40 Aligned_cols=113 Identities=12% Similarity=0.044 Sum_probs=76.1
Q ss_pred HHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc----------
Q 001139 16 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS---------- 85 (1143)
Q Consensus 16 ~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~---------- 85 (1143)
..+|.....-|-|..|+-+++...+.. | ..+...-.+..+|...+++|...-....
T Consensus 69 ~~la~~~~~~~~~~~A~~~~~~al~~~--------~------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 134 (234)
T TIGR02521 69 LALALYYQQLGELEKAEDSFRRALTLN--------P------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQP 134 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--------C------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc
Confidence 457778888888999998888765321 1 1233445677788888888886655321
Q ss_pred -cchhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhch
Q 001139 86 -HKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGC 164 (1143)
Q Consensus 86 -~~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~ 164 (1143)
........-|...|++++|..+|+..++..|. .......+.+++...|.
T Consensus 135 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------------------------~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 135 ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ------------------------------RPESLLELAELYYLRGQ 184 (234)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------------------------------ChHHHHHHHHHHHHcCC
Confidence 01234566789999999999999999887554 11234566677777888
Q ss_pred hhHHHHHH
Q 001139 165 MHVLDMYC 172 (1143)
Q Consensus 165 ~~~l~~~~ 172 (1143)
++....+.
T Consensus 185 ~~~A~~~~ 192 (234)
T TIGR02521 185 YKDARAYL 192 (234)
T ss_pred HHHHHHHH
Confidence 77655444
No 76
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=67.65 E-value=28 Score=29.84 Aligned_cols=60 Identities=17% Similarity=-0.048 Sum_probs=47.1
Q ss_pred HHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC
Q 001139 368 STLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESN 435 (1143)
Q Consensus 368 ~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~ 435 (1143)
.++...++++.|...+..+..+.+ ......+..|.++...|+...|+..++..+...+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p--------~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP--------DDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc--------ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 456778999999999888866532 122445789999999999999999999988766543
No 77
>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c
Probab=67.09 E-value=3.4 Score=43.70 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.3
Q ss_pred CCCCCCceEEecCCCeEEEeecchhhc
Q 001139 967 GDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 967 gDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
||=+|+|||++ +|++.=||||.+-.
T Consensus 142 rDlkP~NIli~--~~~v~LiDFG~a~~ 166 (190)
T cd05147 142 ADLSEYNLLYH--DGKLYIIDVSQSVE 166 (190)
T ss_pred CCCCHHHEEEE--CCcEEEEEcccccc
Confidence 89999999998 59999999998643
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=66.96 E-value=17 Score=40.95 Aligned_cols=86 Identities=16% Similarity=0.159 Sum_probs=64.0
Q ss_pred HHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c----c
Q 001139 17 RVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H----K 87 (1143)
Q Consensus 17 ~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~----~ 87 (1143)
.++|+=.+-|+|-+|=-.+....++ ...++.+=+|.++|..||+|..+--+... + -
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q---------------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~ 292 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ---------------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTY 292 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc---------------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhh
Confidence 5777777778777775555443321 23567788999999999999987555321 1 1
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 88 LSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 88 l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
+.-+++-||-.|+.++|+++|...+..+|.
T Consensus 293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~ 322 (478)
T KOG1129|consen 293 LLGQARIHEAMEQQEDALQLYKLVLKLHPI 322 (478)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 357899999999999999999999987554
No 79
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=66.96 E-value=63 Score=34.40 Aligned_cols=68 Identities=10% Similarity=-0.154 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHH-HcCC--hHHHHHHHHHHHHhcc
Q 001139 358 FTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLR-AQGQ--HEMAINLAKYISENYE 433 (1143)
Q Consensus 358 ~~~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW-~~Ge--~~~Ai~~Lk~l~~~~~ 433 (1143)
.....|...+.+....|++..|..++.++..+... .....+..|.+++ ..|+ ...|+.+++..+...+
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~--------~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP 141 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE--------NAELYAALATVLYYQAGQHMTPQTREMIDKALALDA 141 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 35678999999999999999999999988766421 1234567899875 5576 4999999998876554
No 80
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=66.82 E-value=8.6 Score=27.77 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=23.5
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 90 SQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 90 ~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
.+..-|.+.|++++|+.+|+.+++.+|+
T Consensus 6 ~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 6 NLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4567899999999999999999987664
No 81
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=65.62 E-value=21 Score=35.82 Aligned_cols=81 Identities=11% Similarity=-0.056 Sum_probs=57.5
Q ss_pred HHHHHHHHHhhCCChhhHhhcccc-----c----chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCC
Q 001139 62 HIEILVSAVTQINEPDSLYGIIQS-----H----KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGL 132 (1143)
Q Consensus 62 ~~e~L~~iY~~L~epD~~~Gi~~~-----~----~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~ 132 (1143)
....+-.++.+.++.|........ + .......-+...|++++|..+|+.++..+|+
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~--------------- 90 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS--------------- 90 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---------------
Confidence 344466777777887776555331 1 1345677889999999999999999987665
Q ss_pred CCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHHHHHH
Q 001139 133 PSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYC 172 (1143)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~~~~ 172 (1143)
+.+.+.++-.|+..+|.......+.
T Consensus 91 ---------------~~~a~~~lg~~l~~~g~~~eAi~~~ 115 (144)
T PRK15359 91 ---------------HPEPVYQTGVCLKMMGEPGLAREAF 115 (144)
T ss_pred ---------------CcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2345677888999999877664443
No 82
>KOG3365 consensus NADH:ubiquinone oxidoreductase, NDUFA5/B13 subunit [Energy production and conversion]
Probab=65.52 E-value=3.4 Score=40.20 Aligned_cols=37 Identities=22% Similarity=0.543 Sum_probs=32.5
Q ss_pred HHHHHhhccCCCCCCCccCHHHHHHHHHHHccChhhhHhhCcccccC
Q 001139 1096 ALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDPERFCLMFPGWGAW 1142 (1143)
Q Consensus 1096 ~~~~v~~kl~g~~~~~~~sv~~~V~~LI~~Atd~~nL~~m~~gW~pw 1142 (1143)
.++.++++|.| +||.++|.||-+.-|+.+|-..|.||
T Consensus 93 d~K~ledql~g----------GqIEE~i~qa~~el~m~~k~~~wk~w 129 (145)
T KOG3365|consen 93 DVKKLEDQLQG----------GQIEEVIEQAEAELNMGRKMFEWKPW 129 (145)
T ss_pred HHHHHHHHhcC----------CchHHHHHHHHHHHHHHhhhhccccc
Confidence 45667777776 68999999999999999999999999
No 83
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=64.28 E-value=5.3 Score=43.24 Aligned_cols=46 Identities=22% Similarity=0.277 Sum_probs=39.5
Q ss_pred HhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhccccCC
Q 001139 952 RSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML 998 (1143)
Q Consensus 952 ~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~~~~l 998 (1143)
-.+.-++++=+++.=.|||..|||..+ +|+++-||=|+||.....|
T Consensus 133 ~~l~riaVfDi~inNaDRk~GhiL~~~-dg~l~~IDHGl~f~~~~kl 178 (253)
T TIGR03843 133 PQLRRMAVFDALVNNADRKGGHVLPGP-DGRVWGVDHGVCFHVEPKL 178 (253)
T ss_pred HHHhhhhhheeeeecCCCCCCcEeEcC-CCcEEEecCceecCCCCcc
Confidence 345668888899999999999999997 9999999999999875444
No 84
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=63.97 E-value=16 Score=31.35 Aligned_cols=54 Identities=17% Similarity=0.074 Sum_probs=41.4
Q ss_pred HHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHHHHHH
Q 001139 93 VTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYC 172 (1143)
Q Consensus 93 ~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~~~~ 172 (1143)
..|-+.++|++|+.+++..+..+|+ +.......-.|+..+|.++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~------------------------------~~~~~~~~a~~~~~~g~~~~A~~~l 52 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD------------------------------DPELWLQRARCLFQLGRYEEALEDL 52 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc------------------------------cchhhHHHHHHHHHhccHHHHHHHH
Confidence 4678899999999999999998775 2234556678999999988876655
Q ss_pred hhhc
Q 001139 173 KGLT 176 (1143)
Q Consensus 173 ~~l~ 176 (1143)
+...
T Consensus 53 ~~~l 56 (73)
T PF13371_consen 53 ERAL 56 (73)
T ss_pred HHHH
Confidence 5443
No 85
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=63.44 E-value=41 Score=28.47 Aligned_cols=63 Identities=10% Similarity=-0.130 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcC-ChHHHHHHHHHHHH
Q 001139 360 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQG-QHEMAINLAKYISE 430 (1143)
Q Consensus 360 ~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~G-e~~~Ai~~Lk~l~~ 430 (1143)
...|...|......|++..|.....++..+. |....+.+-.+.+++.+| +...|+..++..++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3568888999999999999999998887653 222345578999999999 68999998876654
No 86
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=63.30 E-value=29 Score=33.18 Aligned_cols=63 Identities=24% Similarity=0.265 Sum_probs=41.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhccCCCchhHHHHHhhhhHH--hhhcCChHHHHHHhhhhhhh
Q 001139 407 EEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLA--ESRSSNSRIILENYLKPAVS 470 (1143)
Q Consensus 407 E~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a~~~~llg~Wla--esr~e~~~~I~~~Y~~~a~~ 470 (1143)
|.|+-+|++|++..|+.++++++...........+..+-|.-.. ....++|+ +...|+..|++
T Consensus 1 e~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d-~k~~yLl~sve 65 (111)
T PF04781_consen 1 EKAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPD-VKFRYLLGSVE 65 (111)
T ss_pred ChHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCch-HHHHHHHHhHH
Confidence 46889999999999999999998776544443345555554332 12345554 34456665654
No 87
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=63.28 E-value=33 Score=40.18 Aligned_cols=88 Identities=9% Similarity=-0.075 Sum_probs=68.4
Q ss_pred HHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c----
Q 001139 16 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H---- 86 (1143)
Q Consensus 16 ~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~---- 86 (1143)
..-|..|..-+.|..|+-+++..+... | ..+..+-.+..+|..+++.+.+...... +
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~--------P------~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~ 71 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLD--------P------NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAK 71 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--------C------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH
Confidence 456899999999999999988766431 1 2345666788899999999988877542 1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 87 KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 87 ~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
..-....-|.+.|++++|+.+|+..+..+|+
T Consensus 72 a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 72 AYLRKGTACMKLEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 1245677889999999999999999988765
No 88
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=62.72 E-value=11 Score=26.98 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=23.4
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 90 SQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 90 ~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
.....|.+.|+|++|..+|+.+++..|+
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4567899999999999999999988764
No 89
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=61.73 E-value=4.2e+02 Score=33.41 Aligned_cols=65 Identities=12% Similarity=-0.145 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 001139 360 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENY 432 (1143)
Q Consensus 360 ~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~ 432 (1143)
...|...+.+....|+++.|...+.++..+. |....+.+..|.+++..|+...|+..++..+...
T Consensus 331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 395 (615)
T TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIELD--------PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN 395 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3445566667777889998888887775442 1122345678888899999999999888776543
No 90
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=61.59 E-value=83 Score=41.35 Aligned_cols=108 Identities=25% Similarity=0.302 Sum_probs=76.8
Q ss_pred CCCCeeeEEeecCCcchhhhHHHHHHHHHHHHHHhcCccccccceeeeeceEEEcCCCCceeEecCCCcchHHHhhhhcc
Q 001139 807 SDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTR 886 (1143)
Q Consensus 807 sdG~~y~~l~K~g~ddlR~D~r~~Ql~~~~N~ll~~~~et~~r~L~i~~y~Vipls~~~gliE~v~~~~~l~~il~~~~~ 886 (1143)
+||+ +.+.|+ .+++-|+...+++..+|.-.... .+++++|+.-+ +-|-.|||+...- .
T Consensus 111 ~~g~--kivYKP--r~l~~d~~f~~~l~~ln~~~~~~--------~~~~~~~l~~~-~ygw~EfI~~~~c-~-------- 168 (825)
T cd04792 111 SSGL--KLVYKP--RSLSVDALFQELLEWLNSFLGAL--------PLRTPKVLDRG-DYGWEEFIEHQPC-Q-------- 168 (825)
T ss_pred CCCC--EEEECC--CCchHHHHHHHHHHHHHhcCCcc--------ccccceeeecC-CcceEEeecCCCC-C--------
Confidence 3564 567886 79999999999999998754332 25788899776 5699999985110 0
Q ss_pred CCCCCCCCCCCcchhHHHHhhccchHhHHHHHHHHHHhhhhhHHHHHHHhcCCchHHHHHHHHHHHhhhhHHHHHHhhcc
Q 001139 887 NGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGL 966 (1143)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~~~~~~~w~~~r~~f~~S~A~~Si~~yilgl 966 (1143)
+ +.+ + .+|=+-++.+-.+.|+||-
T Consensus 169 -----------------------~---~~e------------~------------------~~fY~r~G~llal~y~L~~ 192 (825)
T cd04792 169 -----------------------S---KEE------------V------------------ERYYYRLGGLLALLYLLNA 192 (825)
T ss_pred -----------------------C---HHH------------H------------------HHHHHHHHHHHHHHHHcCC
Confidence 0 000 1 1244557888889999999
Q ss_pred CCCCCCceEEecCCCeEEEeecchhhcc
Q 001139 967 GDRHAMNILIDQATAEVVHIDLGVAFEQ 994 (1143)
Q Consensus 967 gDRh~~NIll~~~tG~v~hiDfg~~f~~ 994 (1143)
.|=|-+||.-+ -+..|=||+--+|..
T Consensus 193 tD~H~ENiIA~--g~~PvlIDlETlf~~ 218 (825)
T cd04792 193 TDLHFENIIAS--GEYPVLIDLETLFHP 218 (825)
T ss_pred cccchhhheee--CCCceEEeeHHhcCC
Confidence 99999999554 467788888777664
No 91
>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]
Probab=60.01 E-value=49 Score=34.96 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=25.7
Q ss_pred CCCCCCceEEecCCCeE--EEeecchhhcc
Q 001139 967 GDRHAMNILIDQATAEV--VHIDLGVAFEQ 994 (1143)
Q Consensus 967 gDRh~~NIll~~~tG~v--~hiDfg~~f~~ 994 (1143)
||-..+||++.+..+++ +-||||..+.+
T Consensus 137 GDLTTSNill~~~~~~~~~~lIdfgls~~s 166 (229)
T KOG3087|consen 137 GDLTTSNILLRSDGNQITPILIDFGLSSVS 166 (229)
T ss_pred ccccccceEEecCCCcCceEEEeecchhcc
Confidence 89999999999999998 99999988765
No 92
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=59.21 E-value=99 Score=28.73 Aligned_cols=83 Identities=20% Similarity=0.146 Sum_probs=56.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCCchhHH
Q 001139 362 HLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDV 441 (1143)
Q Consensus 362 ~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a~~ 441 (1143)
.+...+....+.|++..|...+.++.... ++. +....+.+..+.++...|+...|+..++.++...+.....+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 78 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKS---TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDA 78 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCc---cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHH
Confidence 35566777888999999999988775432 111 1112345789999999999999999999998766544333444
Q ss_pred HHHhhhhH
Q 001139 442 YRLVGKWL 449 (1143)
Q Consensus 442 ~~llg~Wl 449 (1143)
+..+|..+
T Consensus 79 ~~~~~~~~ 86 (119)
T TIGR02795 79 LLKLGMSL 86 (119)
T ss_pred HHHHHHHH
Confidence 55555443
No 93
>cd05151 ChoK Choline Kinase (ChoK). The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph
Probab=57.43 E-value=8.1 Score=39.31 Aligned_cols=30 Identities=23% Similarity=0.148 Sum_probs=24.6
Q ss_pred HHhhccCCCCCCceEEecCCCeEEEeecchhh
Q 001139 961 GYIVGLGDRHAMNILIDQATAEVVHIDLGVAF 992 (1143)
Q Consensus 961 ~yilglgDRh~~NIll~~~tG~v~hiDfg~~f 992 (1143)
.+.+-=||=||+||+++ .|++.-|||+.+-
T Consensus 106 ~~~~~HgD~~~~Nil~~--~~~~~liDf~~a~ 135 (170)
T cd05151 106 DLVPCHNDLLPGNFLLD--DGRLWLIDWEYAG 135 (170)
T ss_pred CceeecCCCCcCcEEEE--CCeEEEEeccccc
Confidence 44455599999999999 6899999999753
No 94
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=57.38 E-value=4 Score=45.44 Aligned_cols=57 Identities=33% Similarity=0.494 Sum_probs=38.2
Q ss_pred hHHHHHHhhccC----CCCCCceEEecCCCeEEEeecchhhc-cccC--C-CCCCCCCccccHHHHhhhc
Q 001139 956 ASSMVGYIVGLG----DRHAMNILIDQATAEVVHIDLGVAFE-QGLM--L-KTPERVPFRLTRDIIDGMG 1017 (1143)
Q Consensus 956 ~~Si~~yilglg----DRh~~NIll~~~tG~v~hiDfg~~f~-~~~~--l-~~pE~VPFRLT~~i~~~~g 1017 (1143)
+.+.+-|+=+++ |--|+|||||+ +|.+=-+|||++=. +|.. + ..||- |.|+++..=|
T Consensus 153 ivlAleylH~~~iiYRDLKPENiLlD~-~G~iKitDFGFAK~v~~rT~TlCGTPeY----LAPEii~sk~ 217 (355)
T KOG0616|consen 153 IVLALEYLHSLDIIYRDLKPENLLLDQ-NGHIKITDFGFAKRVSGRTWTLCGTPEY----LAPEIIQSKG 217 (355)
T ss_pred HHHHHHHHHhcCeeeccCChHHeeecc-CCcEEEEeccceEEecCcEEEecCCccc----cChHHhhcCC
Confidence 455677775554 88999999996 99999999998743 2221 1 34443 3466665443
No 95
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=56.68 E-value=55 Score=41.85 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc------cc-
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS------HK- 87 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~------~~- 87 (1143)
+..||.+++++|.|.-|+..+|.-++-. |++ ....-.+..+=.+++..|.+-..... .+
T Consensus 89 ~~~La~i~~~~g~~~ea~~~l~~~~~~~--------Pd~------~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~ 154 (694)
T PRK15179 89 QVLVARALEAAHRSDEGLAVWRGIHQRF--------PDS------SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA 154 (694)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhC--------CCc------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH
Confidence 4579999999999999999999866431 332 22233356666777777776666432 11
Q ss_pred --hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchh
Q 001139 88 --LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 165 (1143)
Q Consensus 88 --l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~ 165 (1143)
+-....-..+.|+.++|..+|+.++...|+ ..+...++-.+|..+|..
T Consensus 155 ~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~------------------------------~~~~~~~~a~~l~~~G~~ 204 (694)
T PRK15179 155 REILLEAKSWDEIGQSEQADACFERLSRQHPE------------------------------FENGYVGWAQSLTRRGAL 204 (694)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC------------------------------cHHHHHHHHHHHHHcCCH
Confidence 346777889999999999999999975443 124567888999999985
Q ss_pred hHH-HHHHhhh
Q 001139 166 HVL-DMYCKGL 175 (1143)
Q Consensus 166 ~~l-~~~~~~l 175 (1143)
+-+ ..|-+.+
T Consensus 205 ~~A~~~~~~a~ 215 (694)
T PRK15179 205 WRARDVLQAGL 215 (694)
T ss_pred HHHHHHHHHHH
Confidence 544 4444443
No 96
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=55.43 E-value=7.4 Score=47.66 Aligned_cols=49 Identities=27% Similarity=0.355 Sum_probs=33.8
Q ss_pred cchhhhHHHHHHHHHHHHHHhcCccccccceeeeeceEEE--cCCCCceeEecCCCcchHHH
Q 001139 821 DDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVP--FTPSAGILEWVDGTVPLGDY 880 (1143)
Q Consensus 821 ddlR~D~r~~Ql~~~~N~ll~~~~et~~r~L~i~~y~Vip--ls~~~gliE~v~~~~~l~~i 880 (1143)
=|+|+++.-+.-|+ ..++.++ .++.|+|++ .++++=.+||++++ ++.++
T Consensus 206 lDy~~EA~n~~~~~---~nf~~~~-------~v~VP~V~we~t~~~VLtmE~i~Gi-~i~d~ 256 (517)
T COG0661 206 LDYRREAANAERFR---ENFKDDP-------DVYVPKVYWEYTTRRVLTMEWIDGI-KISDI 256 (517)
T ss_pred hCHHHHHHHHHHHH---HHcCCCC-------CeEeceeehhccCCcEEEEEeeCCE-ecccH
Confidence 37888887766553 3444443 689999996 58888889999974 44433
No 97
>PRK14879 serine/threonine protein kinase; Provisional
Probab=55.36 E-value=19 Score=38.17 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=22.1
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhh
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAF 992 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f 992 (1143)
=||-+|+|||++ .|.+.-||||.+-
T Consensus 118 H~Dl~p~Nil~~--~~~~~liDf~~a~ 142 (211)
T PRK14879 118 HGDLTTSNMILS--GGKIYLIDFGLAE 142 (211)
T ss_pred cCCCCcccEEEE--CCCEEEEECCccc
Confidence 389999999999 7999999999753
No 98
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=54.60 E-value=49 Score=30.90 Aligned_cols=59 Identities=7% Similarity=-0.005 Sum_probs=42.5
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHHH
Q 001139 90 SQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLD 169 (1143)
Q Consensus 90 ~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~ 169 (1143)
..+..+...|++++|...|+..++..|+. . + ..+....+.+++...|.+....
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~----------------~--------~~~~~~~l~~~~~~~~~~~~A~ 59 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKS---T----------------Y--------APNAHYWLGEAYYAQGKYADAA 59 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCc---c----------------c--------cHHHHHHHHHHHHhhccHHHHH
Confidence 45668888999999999999998875540 0 0 1133456778899999988776
Q ss_pred HHHhhh
Q 001139 170 MYCKGL 175 (1143)
Q Consensus 170 ~~~~~l 175 (1143)
.+.+.+
T Consensus 60 ~~~~~~ 65 (119)
T TIGR02795 60 KAFLAV 65 (119)
T ss_pred HHHHHH
Confidence 666544
No 99
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=53.93 E-value=17 Score=28.18 Aligned_cols=28 Identities=11% Similarity=-0.039 Sum_probs=25.3
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 90 SQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 90 ~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
.....|...|++++|..+|+..++..|+
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4567899999999999999999998776
No 100
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=51.98 E-value=8.5 Score=47.45 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=22.1
Q ss_pred cCCCCCCceEEecCCC----eEEEeecchh
Q 001139 966 LGDRHAMNILIDQATA----EVVHIDLGVA 991 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG----~v~hiDfg~~ 991 (1143)
=+|=||+||+++. +| +++-+|||++
T Consensus 283 HaDpHPGNIlv~~-~g~~~~~i~llDFGiv 311 (537)
T PRK04750 283 HADMHPGNIFVSY-DPPENPRYIALDFGIV 311 (537)
T ss_pred eCCCChHHeEEec-CCCCCCeEEEEecceE
Confidence 3899999999996 55 9999999985
No 101
>TIGR03724 arch_bud32 Kae1-associated kinase Bud32. Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.
Probab=51.93 E-value=10 Score=39.82 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.8
Q ss_pred cCCCCCCceEEecCCCeEEEeecchh
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVA 991 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~ 991 (1143)
=||-||+||+++ .|++.-||||.+
T Consensus 113 H~Dl~~~Nil~~--~~~~~liDfg~a 136 (199)
T TIGR03724 113 HGDLTTSNIIVR--DDKLYLIDFGLG 136 (199)
T ss_pred cCCCCcceEEEE--CCcEEEEECCCC
Confidence 489999999999 799999999864
No 102
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=51.83 E-value=51 Score=31.93 Aligned_cols=89 Identities=13% Similarity=0.020 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c-c-
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H-K- 87 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~-~- 87 (1143)
...+|.++...+.|..|+-+++.-+.. .| ..+...-.+-.+|...++++.+.-+... + +
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 85 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAY--------DP------YNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDP 85 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHh--------CC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 345788889999999999998865421 11 2245566788888888888876655321 1 1
Q ss_pred --hhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 88 --LSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 88 --l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
.-....-|...|++++|+.+|+..++.+|+
T Consensus 86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 86 RPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 234677899999999999999999988765
No 103
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=51.31 E-value=18 Score=25.56 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=23.8
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 90 SQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 90 ~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
..+..|...|+|++|...|+..+...|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3466788899999999999999987664
No 104
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=51.24 E-value=1.1e+03 Score=34.85 Aligned_cols=56 Identities=20% Similarity=0.254 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhCCChhhHhhcccccc--hhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 62 HIEILVSAVTQINEPDSLYGIIQSHK--LSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 62 ~~e~L~~iY~~L~epD~~~Gi~~~~~--l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
..+...+.|.+|.+-|+++|.+..+. .+.....|+..|.|..++..|+.+.....+
T Consensus 1125 ~~~~~~~~~~~L~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~q~~~e~~~~k~~~ 1182 (2105)
T COG5032 1125 DALGKLELYSSLAEIDMFLSLHRRRKLLETLVATAYEQVGEWYKAQQLYEVAQRKARS 1182 (2105)
T ss_pred hHHHHHHHHHHHHHHhhhhccCcchhhhhHHHHHHHHHHHhHHHHHHHHHHHhhhccc
Confidence 34567889999999999999998764 467777999999999999999998765443
No 105
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=50.89 E-value=9.9 Score=41.54 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.3
Q ss_pred CCCCCCceEEecCCCeEEEeecchh
Q 001139 967 GDRHAMNILIDQATAEVVHIDLGVA 991 (1143)
Q Consensus 967 gDRh~~NIll~~~tG~v~hiDfg~~ 991 (1143)
||=||+||+++. .| ++=||||..
T Consensus 159 ~Dikp~Nili~~-~g-i~liDfg~~ 181 (232)
T PRK10359 159 GDPHKGNFIVSK-NG-LRIIDLSGK 181 (232)
T ss_pred CCCChHHEEEeC-CC-EEEEECCCc
Confidence 799999999986 77 999999853
No 106
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=50.39 E-value=52 Score=28.61 Aligned_cols=71 Identities=14% Similarity=-0.093 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001139 358 FTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYIS 429 (1143)
Q Consensus 358 ~~~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~ 429 (1143)
.+...+...|.+.+..|+++.|...+.++..+....+. ..+.........|.++-..|+.+.|+..++..+
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-DHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566777899999999999999988877665211111 112122334678888999999999999887654
No 107
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=49.93 E-value=1.1e+02 Score=40.78 Aligned_cols=86 Identities=9% Similarity=0.039 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhC---CChhhHhhccc-----cc
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQI---NEPDSLYGIIQ-----SH 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L---~epD~~~Gi~~-----~~ 86 (1143)
...+|.++.+-|-+..|+-+++..... . |....++..+...+ +++|.+.-... .+
T Consensus 545 ~~~la~all~~Gd~~eA~~~l~qAL~l--------~---------P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P 607 (987)
T PRK09782 545 LLAAANTAQAAGNGAARDRWLQQAEQR--------G---------LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP 607 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--------C---------CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 345677778888888888888765421 0 11122233333333 66666655432 12
Q ss_pred c---hhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 87 K---LSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 87 ~---l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
+ ......-|.+.|++++|..+|+.++..+|+
T Consensus 608 ~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd 641 (987)
T PRK09782 608 SANAYVARATIYRQRHNVPAAVSDLRAALELEPN 641 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 2 234455677788888888888888777665
No 108
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=49.42 E-value=56 Score=28.44 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=22.5
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHhh
Q 001139 88 LSSQIVTLEHEGNWSKALEYYELQVRS 114 (1143)
Q Consensus 88 l~~~i~~yE~~g~w~~Al~~Ye~~l~~ 114 (1143)
+.....-|...|+|++|+.+|+.+++.
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDI 34 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356677899999999999999999876
No 109
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=48.84 E-value=44 Score=29.77 Aligned_cols=74 Identities=18% Similarity=0.145 Sum_probs=52.2
Q ss_pred chhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccccc--------hhhHHHHHHh
Q 001139 26 GSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSHK--------LSSQIVTLEH 97 (1143)
Q Consensus 26 ~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~~~--------l~~~i~~yE~ 97 (1143)
+.|..|+.++|..+.... . .......-.|..+|-+.++.+.++.+..... .-..+.-|.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~--------~----~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDP--------T----NPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLK 70 (84)
T ss_dssp T-HHHHHHHHHHHHHHHC--------G----THHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCC--------C----ChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 578999999998875431 0 0012344457999999999999999974311 1245778999
Q ss_pred hCCHHHHHHHHHHH
Q 001139 98 EGNWSKALEYYELQ 111 (1143)
Q Consensus 98 ~g~w~~Al~~Ye~~ 111 (1143)
.|+|++|+.+|+.+
T Consensus 71 l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 71 LGKYEEAIKALEKA 84 (84)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred hCCHHHHHHHHhcC
Confidence 99999999999863
No 110
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=48.21 E-value=22 Score=42.83 Aligned_cols=24 Identities=25% Similarity=0.592 Sum_probs=22.1
Q ss_pred CCCCCCceEEecCCCeEEEeecchh
Q 001139 967 GDRHAMNILIDQATAEVVHIDLGVA 991 (1143)
Q Consensus 967 gDRh~~NIll~~~tG~v~hiDfg~~ 991 (1143)
||=||+||+++. +|+++=+|||.+
T Consensus 281 ~D~hPgNilv~~-~g~i~liDfG~~ 304 (437)
T TIGR01982 281 ADLHPGNIFVLK-DGKIIALDFGIV 304 (437)
T ss_pred CCCCcccEEECC-CCcEEEEeCCCe
Confidence 799999999985 899999999985
No 111
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=47.74 E-value=14 Score=39.09 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=25.6
Q ss_pred ccCCCCCCceEEecCCCeEEEeecchhhccc
Q 001139 965 GLGDRHAMNILIDQATAEVVHIDLGVAFEQG 995 (1143)
Q Consensus 965 glgDRh~~NIll~~~tG~v~hiDfg~~f~~~ 995 (1143)
-=||=+|+||+++. +|++.=||||.++..+
T Consensus 147 ~H~Dl~p~Nill~~-~~~~~liDfg~~~~~~ 176 (198)
T cd05144 147 IHGDLSEFNILVDD-DEKIYIIDWPQMVSTD 176 (198)
T ss_pred CcCCCCcccEEEcC-CCcEEEEECCccccCC
Confidence 34689999999996 9999999999987644
No 112
>PRK14574 hmsH outer membrane protein; Provisional
Probab=47.39 E-value=86 Score=40.98 Aligned_cols=118 Identities=11% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc---------cchh
Q 001139 19 AKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS---------HKLS 89 (1143)
Q Consensus 19 A~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~---------~~l~ 89 (1143)
|-.+.+-|-|..|+-.++...... +..+..+.-|+.+|..+++.+.+--.... ..+.
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~--------------P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll 106 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAG--------------PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA 106 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhC--------------ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHHH
Q 001139 90 SQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLD 169 (1143)
Q Consensus 90 ~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~ 169 (1143)
..+..|..+|+|++|+..|+..++.+|+ +.+...|+...+..+|+...+.
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~------------------------------n~~~l~gLa~~y~~~~q~~eAl 156 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPT------------------------------NPDLISGMIMTQADAGRGGVVL 156 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC------------------------------CHHHHHHHHHHHhhcCCHHHHH
Q ss_pred HHHhhhccccC
Q 001139 170 MYCKGLTSWKG 180 (1143)
Q Consensus 170 ~~~~~l~~~~~ 180 (1143)
.+++.+....+
T Consensus 157 ~~l~~l~~~dp 167 (822)
T PRK14574 157 KQATELAERDP 167 (822)
T ss_pred HHHHHhcccCc
No 113
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=46.81 E-value=1.7e+02 Score=39.22 Aligned_cols=113 Identities=10% Similarity=-0.068 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c-ch
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H-KL 88 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~-~l 88 (1143)
.+.+|.+....|.|..|+.+++..... . .. +...-.+..++.+.++++.+...... + ..
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--------~------p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~ 576 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--------D------MS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDN 576 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--------C------CC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccH
Confidence 445566666777777777776642110 0 01 11222345566667777665555321 1 11
Q ss_pred hhH---HHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchh
Q 001139 89 SSQ---IVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 165 (1143)
Q Consensus 89 ~~~---i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~ 165 (1143)
... ....+..|++++|+.+|+.+++..|+ .+.+..+-.++..+|.+
T Consensus 577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-------------------------------~~a~~~LA~~l~~lG~~ 625 (987)
T PRK09782 577 ALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-------------------------------ANAYVARATIYRQRHNV 625 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-------------------------------HHHHHHHHHHHHHCCCH
Confidence 111 12333448888888888887765443 12345556677777777
Q ss_pred hHHHHHHh
Q 001139 166 HVLDMYCK 173 (1143)
Q Consensus 166 ~~l~~~~~ 173 (1143)
+....+.+
T Consensus 626 deA~~~l~ 633 (987)
T PRK09782 626 PAAVSDLR 633 (987)
T ss_pred HHHHHHHH
Confidence 66654443
No 114
>cd05119 RIO RIO kinase family, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct
Probab=46.25 E-value=14 Score=38.39 Aligned_cols=26 Identities=42% Similarity=0.535 Sum_probs=23.0
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
=||=||+||+++ +|.+.=||||.+-.
T Consensus 138 H~Dl~p~Nili~--~~~~~liDfg~a~~ 163 (187)
T cd05119 138 HGDLSEYNILVD--DGKVYIIDVPQAVE 163 (187)
T ss_pred cCCCChhhEEEE--CCcEEEEECccccc
Confidence 479999999999 89999999998743
No 115
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=45.77 E-value=1e+02 Score=36.69 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=74.8
Q ss_pred HHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhC--CChhhHhhccc----c--cc-
Q 001139 17 RVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQI--NEPDSLYGIIQ----S--HK- 87 (1143)
Q Consensus 17 ~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L--~epD~~~Gi~~----~--~~- 87 (1143)
.+|++...+|.+.+|.-.+|...... + . +.|..+|..+ ++|+..--... . .+
T Consensus 268 ~~A~~l~~~g~~~~A~~~L~~~l~~~--------~-------~----~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~ 328 (398)
T PRK10747 268 AMAEHLIECDDHDTAQQIILDGLKRQ--------Y-------D----ERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTP 328 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--------C-------C----HHHHHHHhhccCCChHHHHHHHHHHHhhCCCCH
Confidence 57899999999999999998754311 0 1 2355677776 55444333321 1 12
Q ss_pred --hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchh
Q 001139 88 --LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 165 (1143)
Q Consensus 88 --l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~ 165 (1143)
+-...+-+-..|+|++|..+++..+...|+ ...+.-+.+++.++|..
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-------------------------------~~~~~~La~~~~~~g~~ 377 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-------------------------------AYDYAWLADALDRLHKP 377 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-------------------------------HHHHHHHHHHHHHcCCH
Confidence 346688899999999999999999987665 12234577899999998
Q ss_pred hHHHHHH-hhh
Q 001139 166 HVLDMYC-KGL 175 (1143)
Q Consensus 166 ~~l~~~~-~~l 175 (1143)
+....+. +|+
T Consensus 378 ~~A~~~~~~~l 388 (398)
T PRK10747 378 EEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHH
Confidence 8775443 454
No 116
>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily.; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....
Probab=45.65 E-value=15 Score=39.27 Aligned_cols=32 Identities=31% Similarity=0.375 Sum_probs=23.0
Q ss_pred HHHhhccCCCCCCceEEecCCCeEEEeecchh
Q 001139 960 VGYIVGLGDRHAMNILIDQATAEVVHIDLGVA 991 (1143)
Q Consensus 960 ~~yilglgDRh~~NIll~~~tG~v~hiDfg~~ 991 (1143)
....+.=||=||+|||++...|+|--|||+.+
T Consensus 164 ~~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a 195 (239)
T PF01636_consen 164 LPPVLIHGDLHPGNILVDPSDGRIGIIDFEDA 195 (239)
T ss_dssp SCEEEE-SS-SGGGEEEESSTTEEEE--GTT-
T ss_pred CCcEEEEeccccccceeeeccceeEEEecccc
Confidence 45677789999999999977888879999875
No 117
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=44.91 E-value=29 Score=30.93 Aligned_cols=74 Identities=19% Similarity=0.241 Sum_probs=47.0
Q ss_pred hCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHHHHHHhhhcc
Q 001139 98 EGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTS 177 (1143)
Q Consensus 98 ~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~~~~~~l~~ 177 (1143)
.|+|++|+.+|+..+...|..+ +......+-.|+-.+|.++....+.+....
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~----------------------------~~~~~~~la~~~~~~~~y~~A~~~~~~~~~ 53 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP----------------------------NSAYLYNLAQCYFQQGKYEEAIELLQKLKL 53 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH----------------------------HHHHHHHHHHHHHHTTHHHHHHHHHHCHTH
T ss_pred CccHHHHHHHHHHHHHHCCCCh----------------------------hHHHHHHHHHHHHHCCCHHHHHHHHHHhCC
Confidence 5899999999999999876400 123445678999999999988777654111
Q ss_pred ccCCCCCCcchhHHHHHHHHcCCCCC
Q 001139 178 WKGQFQHDPEFTKLQYEAAWRTGNWD 203 (1143)
Q Consensus 178 ~~~~~~~~~~~~~~~~eaAWrl~~Wd 203 (1143)
.. ......-+.+.|...+|+|+
T Consensus 54 ~~----~~~~~~~l~a~~~~~l~~y~ 75 (84)
T PF12895_consen 54 DP----SNPDIHYLLARCLLKLGKYE 75 (84)
T ss_dssp HH----CHHHHHHHHHHHHHHTT-HH
T ss_pred CC----CCHHHHHHHHHHHHHhCCHH
Confidence 10 01122334567777777776
No 118
>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.
Probab=43.63 E-value=13 Score=39.30 Aligned_cols=45 Identities=36% Similarity=0.501 Sum_probs=29.5
Q ss_pred CCCCCCceEEecCCCeEEEeecchhhccccCCCCCCCCCccccHHHHhhhcc
Q 001139 967 GDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGV 1018 (1143)
Q Consensus 967 gDRh~~NIll~~~tG~v~hiDfg~~f~~~~~l~~pE~VPFRLT~~i~~~~g~ 1018 (1143)
||-++.|||++. |+++-||||-+++.. .| ..-.-|.|++.+....
T Consensus 131 GDLs~~NIlv~~--~~~~iIDf~qav~~~----~p-~a~~~l~RDi~ni~~f 175 (188)
T PF01163_consen 131 GDLSEYNILVDD--GKVYIIDFGQAVDSS----HP-NAEELLRRDIENIIRF 175 (188)
T ss_dssp SS-STTSEEEET--TCEEE--GTTEEETT----ST-THHHHHHHHHHHHHHH
T ss_pred cCCChhhEEeec--ceEEEEecCcceecC----Cc-cHHHHHHHHHHHHHHH
Confidence 999999999995 599999999887754 23 2334566666554443
No 119
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=43.62 E-value=20 Score=43.92 Aligned_cols=39 Identities=26% Similarity=0.216 Sum_probs=27.9
Q ss_pred hhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 954 VAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 954 ~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
||+=|+---=|==-|--|+|||||+ .|.+=-.|||.|=+
T Consensus 740 cAiesVHkmGFIHRDiKPDNILIDr-dGHIKLTDFGLCTG 778 (1034)
T KOG0608|consen 740 CAIESVHKMGFIHRDIKPDNILIDR-DGHIKLTDFGLCTG 778 (1034)
T ss_pred HHHHHHHhccceecccCccceEEcc-CCceeeeecccccc
Confidence 5555542221223478899999997 99999999999854
No 120
>smart00090 RIO RIO-like kinase.
Probab=43.45 E-value=17 Score=39.86 Aligned_cols=28 Identities=36% Similarity=0.490 Sum_probs=24.1
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhccc
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFEQG 995 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~~~ 995 (1143)
=||=||+||+++ +|++.=||||.+...+
T Consensus 172 H~Dikp~NIli~--~~~i~LiDFg~a~~~~ 199 (237)
T smart00090 172 HGDLSEYNILVH--DGKVVIIDVSQSVELD 199 (237)
T ss_pred eCCCChhhEEEE--CCCEEEEEChhhhccC
Confidence 379999999999 8999999999876543
No 121
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=43.24 E-value=38 Score=24.19 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=23.5
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 001139 90 SQIVTLEHEGNWSKALEYYELQVRSDV 116 (1143)
Q Consensus 90 ~~i~~yE~~g~w~~Al~~Ye~~l~~~~ 116 (1143)
....-|...|++++|..+|+..++..|
T Consensus 6 ~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 6 NLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 466789999999999999999988755
No 122
>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]
Probab=43.01 E-value=18 Score=38.05 Aligned_cols=24 Identities=29% Similarity=0.546 Sum_probs=21.6
Q ss_pred CCCCCCceEEecCCCeEEEeecchhh
Q 001139 967 GDRHAMNILIDQATAEVVHIDLGVAF 992 (1143)
Q Consensus 967 gDRh~~NIll~~~tG~v~hiDfg~~f 992 (1143)
||-+++||++. .|+++-||||...
T Consensus 116 GDLTtsNiIl~--~~~i~~IDfGLg~ 139 (204)
T COG3642 116 GDLTTSNIILS--GGRIYFIDFGLGE 139 (204)
T ss_pred CCCccceEEEe--CCcEEEEECCccc
Confidence 89999999998 5679999999865
No 123
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=42.85 E-value=32 Score=35.13 Aligned_cols=46 Identities=7% Similarity=0.034 Sum_probs=34.2
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhH
Q 001139 92 IVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHV 167 (1143)
Q Consensus 92 i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~ 167 (1143)
..-+...|+|++|+.+|..+...+|+ +...+...-.|+..+|.-..
T Consensus 76 G~~~Q~~g~~~~AI~aY~~A~~L~~d------------------------------dp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 76 GECCQAQKHWGEAIYAYGRAAQIKID------------------------------APQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCC------------------------------CchHHHHHHHHHHHcCCHHH
Confidence 33567789999999999999987765 12334566779999987443
No 124
>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]
Probab=42.63 E-value=13 Score=42.42 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=24.6
Q ss_pred CCCCCCceEEecCCCeEEEeecchhhccc
Q 001139 967 GDRHAMNILIDQATAEVVHIDLGVAFEQG 995 (1143)
Q Consensus 967 gDRh~~NIll~~~tG~v~hiDfg~~f~~~ 995 (1143)
-|-+|+||||+. +|.+==+|||.+-..+
T Consensus 144 RDLKPQNlLi~~-~G~lKlaDFGlAra~~ 171 (323)
T KOG0594|consen 144 RDLKPQNLLISS-SGVLKLADFGLARAFS 171 (323)
T ss_pred ccCCcceEEECC-CCcEeeeccchHHHhc
Confidence 588999999997 9999999999876544
No 125
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=41.89 E-value=1.8e+02 Score=33.52 Aligned_cols=96 Identities=18% Similarity=0.170 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhh---cchhHHHHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCC
Q 001139 319 SWLNTEWSSILKRTQLHMNLLEPFMAFRRVLLQIL---SCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGD 395 (1143)
Q Consensus 319 ~~l~~~W~~rl~~~~~~~~~~E~iL~~R~~ll~~l---~~~~~~~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~ 395 (1143)
+.+.+.|++.+.....++.+|..+|.+++.=+... .+.+...++ .++|.....-. ....
T Consensus 82 ~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~-----------------l~~L~~~~~~~-~~~~ 143 (321)
T PF08424_consen 82 EKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKC-----------------LRALSRRRSGR-MTSH 143 (321)
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHH-----------------HHHHHHhhccc-cccc
Confidence 34778899999887788999999999887633211 112211222 22222111000 0000
Q ss_pred CCCch----hhhHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 001139 396 QCSTV----YWLGRLEEAKLLRAQGQHEMAINLAKYISENY 432 (1143)
Q Consensus 396 ~~~~~----~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~ 432 (1143)
...+. .-...+..+..++..|..+.|+.+.|.++.-.
T Consensus 144 ~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 144 PDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 00111 11124678999999999999999999987643
No 126
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=41.85 E-value=9.2e+02 Score=31.42 Aligned_cols=111 Identities=12% Similarity=0.084 Sum_probs=77.1
Q ss_pred chHHHHHHHHHhhCCChhhHhhcccc----c-----chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCC
Q 001139 60 PRHIEILVSAVTQINEPDSLYGIIQS----H-----KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPH 130 (1143)
Q Consensus 60 ~~~~e~L~~iY~~L~epD~~~Gi~~~----~-----~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~ 130 (1143)
+..+.=...|..-.++++.+-.++.. . .+...+..|...|+|++|+.+|+..++..|.
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~------------- 81 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ------------- 81 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------
Confidence 44455578899999999999877642 1 1456777899999999999999999988665
Q ss_pred CCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHHHHHHhhhccccCCCCCCcchhHHHHHHHHcCCCCCC
Q 001139 131 GLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDF 204 (1143)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~eaAWrl~~Wd~ 204 (1143)
+.+...++..++...|.......+++.+....+ .. .. ......+..+.|+-+.
T Consensus 82 -----------------~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P--~~-~~-~~~la~~l~~~g~~~~ 134 (765)
T PRK10049 82 -----------------NDDYQRGLILTLADAGQYDEALVKAKQLVSGAP--DK-AN-LLALAYVYKRAGRHWD 134 (765)
T ss_pred -----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CC-HH-HHHHHHHHHHCCCHHH
Confidence 234467888999999999888777765544322 11 22 2223444556665553
No 127
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=40.85 E-value=63 Score=32.07 Aligned_cols=54 Identities=22% Similarity=0.256 Sum_probs=42.2
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhH
Q 001139 88 LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHV 167 (1143)
Q Consensus 88 l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~ 167 (1143)
+...+..+...|++++|+..++..+..+|- +...+..+|+|+...|....
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~------------------------------~E~~~~~lm~~~~~~g~~~~ 114 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPY------------------------------DEEAYRLLMRALAAQGRRAE 114 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-------------------------------HHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCC------------------------------CHHHHHHHHHHHHHCcCHHH
Confidence 456777888999999999999999998775 34678899999999998766
Q ss_pred HHHH
Q 001139 168 LDMY 171 (1143)
Q Consensus 168 l~~~ 171 (1143)
+..+
T Consensus 115 A~~~ 118 (146)
T PF03704_consen 115 ALRV 118 (146)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=40.72 E-value=1.7e+02 Score=28.10 Aligned_cols=67 Identities=18% Similarity=-0.030 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC
Q 001139 360 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYES 434 (1143)
Q Consensus 360 ~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~ 434 (1143)
...|...+....+.|++..|...+.++..+. |......+..|.+++..|+...|+..++..+...+.
T Consensus 51 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 51 SRYWLGLAACCQMLKEYEEAIDAYALAAALD--------PDDPRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4557777888888999999998887765442 112234567899999999999999999888765543
No 129
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=40.07 E-value=8.6e+02 Score=30.56 Aligned_cols=69 Identities=19% Similarity=0.144 Sum_probs=46.2
Q ss_pred HHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCCchhHHHHHhhh
Q 001139 368 STLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGK 447 (1143)
Q Consensus 368 ~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a~~~~llg~ 447 (1143)
..--.-|+.+.|...+-++-.+. |..++.+++.|++|...|...+|++.|+++..-.+ +-+-++.++|+
T Consensus 531 ~~~~~~k~~d~AL~~~~~A~~ld--------~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP---~es~v~~llgk 599 (638)
T KOG1126|consen 531 RIQHQLKRKDKALQLYEKAIHLD--------PKNPLCKYHRASILFSLGRYVEALQELEELKELVP---QESSVFALLGK 599 (638)
T ss_pred HHHHHhhhhhHHHHHHHHHHhcC--------CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCc---chHHHHHHHHH
Confidence 34445677777777766654442 22346789999999999999999999988754322 22445566553
No 130
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=39.65 E-value=64 Score=37.78 Aligned_cols=56 Identities=11% Similarity=0.126 Sum_probs=43.0
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhH
Q 001139 88 LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHV 167 (1143)
Q Consensus 88 l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~ 167 (1143)
+..++...-..|+|++|+.+|+.+++.+|+ +...+..+..|+..+|.+..
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~------------------------------~~~a~~~~a~~~~~~g~~~e 54 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPN------------------------------NAELYADRAQANIKLGNFTE 54 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------------------CHHHHHHHHHHHHHcCCHHH
Confidence 456677888999999999999999998765 23456677788888888776
Q ss_pred HHHHHh
Q 001139 168 LDMYCK 173 (1143)
Q Consensus 168 l~~~~~ 173 (1143)
+..+++
T Consensus 55 Al~~~~ 60 (356)
T PLN03088 55 AVADAN 60 (356)
T ss_pred HHHHHH
Confidence 655443
No 131
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=39.54 E-value=1.2e+02 Score=29.52 Aligned_cols=63 Identities=29% Similarity=0.163 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHH
Q 001139 360 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKY 427 (1143)
Q Consensus 360 ~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~ 427 (1143)
.+.++..+...|.-|++..|...|.+... ..|+..... ..+.-.|-.|+..|++.+|+..+-.
T Consensus 38 ~~a~i~lastlr~LG~~deA~~~L~~~~~--~~p~~~~~~---~l~~f~Al~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 38 RRALIQLASTLRNLGRYDEALALLEEALE--EFPDDELNA---ALRVFLALALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCccccH---HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45788899999999999999999987643 212211111 2234578899999999999997643
No 132
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=39.26 E-value=2e+02 Score=24.13 Aligned_cols=62 Identities=16% Similarity=-0.112 Sum_probs=46.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 001139 363 LLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENY 432 (1143)
Q Consensus 363 wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~ 432 (1143)
|...|......|++..|...+.++..... ....+.+..|.+++..|+...|+..++..+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 64 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP--------DNADAYYNLAAAYYKLGKYEEALEDYEKALELD 64 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC--------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45567777789999999998887654321 112345778999999999999999998876643
No 133
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=38.37 E-value=6.8e+02 Score=28.94 Aligned_cols=63 Identities=14% Similarity=-0.012 Sum_probs=45.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 001139 362 HLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENY 432 (1143)
Q Consensus 362 ~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~ 432 (1143)
.+...+...-+.|++..|...+.++.... |....+....+.++..+|+...|+..++.++...
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEG--------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG 171 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCC--------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence 34555677778899999999888775431 1112344668889999999999999998887644
No 134
>PRK12274 serine/threonine protein kinase; Provisional
Probab=37.63 E-value=23 Score=38.17 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.9
Q ss_pred CCC-CCCceEEecCCCeEEEeecchhh
Q 001139 967 GDR-HAMNILIDQATAEVVHIDLGVAF 992 (1143)
Q Consensus 967 gDR-h~~NIll~~~tG~v~hiDfg~~f 992 (1143)
+|- .|+|||++. .|++.=||||.+-
T Consensus 115 rDL~kp~NILv~~-~g~i~LIDFG~A~ 140 (218)
T PRK12274 115 NDLAKEANWLVQE-DGSPAVIDFQLAV 140 (218)
T ss_pred CCCCCcceEEEcC-CCCEEEEECCCce
Confidence 787 589999995 8999999999874
No 135
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=37.59 E-value=1.8e+02 Score=34.72 Aligned_cols=122 Identities=15% Similarity=0.122 Sum_probs=82.1
Q ss_pred HHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc---------cch
Q 001139 18 VAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS---------HKL 88 (1143)
Q Consensus 18 lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~---------~~l 88 (1143)
|++|=.-=++++=||+|+-..+.= .+..+-....|-++|.+|+.++-+.|+-.. ..+
T Consensus 404 LGQaYeim~Mh~YaLyYfqkA~~~--------------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 404 LGQAYEIMKMHFYALYYFQKALEL--------------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred hhHHHHHhcchHHHHHHHHHHHhc--------------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 677777778888899998764321 122355778899999999999999999542 124
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHH
Q 001139 89 SSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVL 168 (1143)
Q Consensus 89 ~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l 168 (1143)
-..+.-||..++.++|-.+|+.-++-... -|.+.+| ......=+.+-....+-|+..
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~~~~~------eg~~~~~-----------------t~ka~~fLA~~f~k~~~~~~A 526 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVEVSEL------EGEIDDE-----------------TIKARLFLAEYFKKMKDFDEA 526 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHh------hcccchH-----------------HHHHHHHHHHHHHhhcchHHH
Confidence 46777899999999999999998763211 0111110 122222344556666778888
Q ss_pred HHHHhhhc
Q 001139 169 DMYCKGLT 176 (1143)
Q Consensus 169 ~~~~~~l~ 176 (1143)
+.|+.+..
T Consensus 527 s~Ya~~~~ 534 (559)
T KOG1155|consen 527 SYYATLVL 534 (559)
T ss_pred HHHHHHHh
Confidence 88886543
No 136
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=37.09 E-value=23 Score=38.89 Aligned_cols=26 Identities=31% Similarity=0.325 Sum_probs=22.5
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhh
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAF 992 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f 992 (1143)
=+|=+|+|||++. +|++.=||||.+-
T Consensus 165 HrDlkp~NILv~~-~~~v~LIDfg~~~ 190 (239)
T PRK01723 165 HADLNAHNILLDP-DGKFWLIDFDRGE 190 (239)
T ss_pred CCCCCchhEEEcC-CCCEEEEECCCcc
Confidence 4799999999996 7899999999653
No 137
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=36.90 E-value=8.9e+02 Score=29.86 Aligned_cols=89 Identities=12% Similarity=0.032 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCCc
Q 001139 358 FTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEE 437 (1143)
Q Consensus 358 ~~~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~ 437 (1143)
.+..+--..|.+-.+.|+++.|.....++-+........ .....++.+|.-|+ + .........
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~-------~~~~~~~~l~~la~---~-------~~~~k~~~~ 427 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGK-------KDYGVGKPLNQLAE---A-------YEELKKYEE 427 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccC-------cChhhhHHHHHHHH---H-------HHHhcccch
Confidence 566777788999999999999998776665433211111 12345666665432 1 112222233
Q ss_pred hhHHHHHhhhhHHhhhcCChHHHHHHh
Q 001139 438 APDVYRLVGKWLAESRSSNSRIILENY 464 (1143)
Q Consensus 438 ~a~~~~llg~Wlaesr~e~~~~I~~~Y 464 (1143)
...++...+.|+ .+.-.+..++.-.|
T Consensus 428 a~~l~~~~~~i~-~~~g~~~~~~~~~~ 453 (508)
T KOG1840|consen 428 AEQLFEEAKDIM-KLCGPDHPDVTYTY 453 (508)
T ss_pred HHHHHHHHHHHH-HHhCCCCCchHHHH
Confidence 456666777777 44433333333333
No 138
>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]
Probab=36.75 E-value=21 Score=43.86 Aligned_cols=40 Identities=23% Similarity=0.100 Sum_probs=30.2
Q ss_pred hhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhcc
Q 001139 955 AASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQ 994 (1143)
Q Consensus 955 A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~ 994 (1143)
|+-.+=+.=.=.+|-||+|||++..-|.+--+|||+.-+.
T Consensus 427 Av~~LH~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~ 466 (612)
T KOG0603|consen 427 AVDYLHEQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSEL 466 (612)
T ss_pred HHHHHHhcCeeecCCChhheeecCCCCcEEEEEechhhhC
Confidence 3444444334579999999999767899999999987654
No 139
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=36.33 E-value=74 Score=24.59 Aligned_cols=31 Identities=23% Similarity=0.132 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccCC
Q 001139 405 RLEEAKLLRAQGQHEMAINLAKYISENYESN 435 (1143)
Q Consensus 405 ~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~ 435 (1143)
.+..|+.++..|+.+.|+.+++.+++..+.+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999998876543
No 140
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=36.03 E-value=1.2e+02 Score=25.57 Aligned_cols=86 Identities=19% Similarity=0.170 Sum_probs=60.4
Q ss_pred HHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c----
Q 001139 16 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H---- 86 (1143)
Q Consensus 16 ~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~---- 86 (1143)
..+|.....-+.|..|+-+++..+... | ..+...-.+..+|...++++....+... +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 69 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD--------P------DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAK 69 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC--------C------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchh
Confidence 457777888899999999988654321 1 1123445578888888888887776532 1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 001139 87 KLSSQIVTLEHEGNWSKALEYYELQVRSD 115 (1143)
Q Consensus 87 ~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~ 115 (1143)
.....+..|...|++++|..+++..+...
T Consensus 70 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 70 AYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 23456678889999999999998877643
No 141
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=35.70 E-value=2.6e+02 Score=29.99 Aligned_cols=81 Identities=21% Similarity=0.121 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCCchhH
Q 001139 361 QHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPD 440 (1143)
Q Consensus 361 ~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a~ 440 (1143)
..+...+....+.|+++.|...+.++...... .+....+.+..|..+-..|+...|+..++.++...+.......
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPF-----SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 34566677788899999999998887554221 1111234577899999999999999999999887765554444
Q ss_pred HHHHhh
Q 001139 441 VYRLVG 446 (1143)
Q Consensus 441 ~~~llg 446 (1143)
++..+|
T Consensus 109 a~~~~g 114 (235)
T TIGR03302 109 AYYLRG 114 (235)
T ss_pred HHHHHH
Confidence 444444
No 142
>PF06702 DUF1193: Protein of unknown function (DUF1193); InterPro: IPR009581 This family is baesd on the C terminus of several hypothetical eukaryotic proteins of unknown function. Proteins in this entry contain two conserved motifs: DRHHYE and QCC, as well as a number of conserved cysteine residues.
Probab=35.41 E-value=60 Score=34.99 Aligned_cols=92 Identities=17% Similarity=0.206 Sum_probs=60.1
Q ss_pred HhhhhHHHHHHhhccCCCCCCceEE-ecCCCeEEEeecchhhccccCCCCCCCCCccccHHHHhhhcccccccchHHHHH
Q 001139 952 RSVAASSMVGYIVGLGDRHAMNILI-DQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCE 1030 (1143)
Q Consensus 952 ~S~A~~Si~~yilglgDRh~~NIll-~~~tG~v~hiDfg~~f~~~~~l~~pE~VPFRLT~~i~~~~g~~g~eG~F~~~~~ 1030 (1143)
..+.=++|+=|++|=+|||-.|+.= .-+.|-++|+|=|-.|++-..-+.+-.+| .--=-.||++-.
T Consensus 90 ldliDm~IFDFLigN~DRhhye~f~~fgn~~~l~~LDNgrgFG~~~~de~sIlaP-------------L~QcC~iRrST~ 156 (221)
T PF06702_consen 90 LDLIDMAIFDFLIGNMDRHHYETFNKFGNEGFLLHLDNGRGFGRPSHDELSILAP-------------LYQCCRIRRSTW 156 (221)
T ss_pred hHHHHHHHHHHHhcCCcchhhhhhhccCCCceEEEEeCCcccCCCCCCccchhcc-------------HHHhhhccccHH
Confidence 3455688999999999999988653 22346799999999896432212221222 111135777777
Q ss_pred HHHHHHhhChHHHHHHHH-HHccCCcc
Q 001139 1031 KTLSVMRTNKEALLTIVE-VFIHDPLY 1056 (1143)
Q Consensus 1031 ~~~~~Lr~~~~~l~~~L~-~f~~Dpl~ 1056 (1143)
..++.|.+....|..+|+ .+.+||+.
T Consensus 157 ~rL~~l~~~~~~Ls~~m~~s~~~D~l~ 183 (221)
T PF06702_consen 157 ERLQLLSKGGYRLSDLMRESLSRDPLA 183 (221)
T ss_pred HHHHHhccCCCcHHHHHHHHhccCccC
Confidence 778888877777777776 44667653
No 143
>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes. The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer
Probab=34.70 E-value=27 Score=39.59 Aligned_cols=32 Identities=28% Similarity=0.268 Sum_probs=27.9
Q ss_pred HHHhhccCCCCCCceEEecC---CCeEEEeecchh
Q 001139 960 VGYIVGLGDRHAMNILIDQA---TAEVVHIDLGVA 991 (1143)
Q Consensus 960 ~~yilglgDRh~~NIll~~~---tG~v~hiDfg~~ 991 (1143)
...++-=||=|++|||++.. +|++.-|||.++
T Consensus 177 ~~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya 211 (302)
T cd05156 177 SPVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYA 211 (302)
T ss_pred CCceEEecCCCcCeEEecCCCCCCCcEEEEeeCCC
Confidence 56788889999999999964 589999999875
No 144
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=34.44 E-value=3.2e+02 Score=28.94 Aligned_cols=80 Identities=20% Similarity=0.119 Sum_probs=56.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCCchhHHH
Q 001139 363 LLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVY 442 (1143)
Q Consensus 363 wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a~~~ 442 (1143)
+-+.|..+=..|++..|...+..+..-- |.+ +....+.+..|......|+...|+...+.++...+..+..+.++
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~--P~s---~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRY--PNS---PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH---TTS---TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCC---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 4445667778999999999988875421 111 11235678899999999999999999999999988877777777
Q ss_pred HHhhh
Q 001139 443 RLVGK 447 (1143)
Q Consensus 443 ~llg~ 447 (1143)
.++|.
T Consensus 83 Y~~g~ 87 (203)
T PF13525_consen 83 YMLGL 87 (203)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66664
No 145
>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity. Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....
Probab=32.83 E-value=79 Score=34.18 Aligned_cols=48 Identities=23% Similarity=0.327 Sum_probs=33.4
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhc---cccCCCCCCCCCccccHHHHh
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFE---QGLMLKTPERVPFRLTRDIID 1014 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~---~~~~l~~pE~VPFRLT~~i~~ 1014 (1143)
=+|=.|+||+++ .+|++.-+|||.+.. ........-..|.=..|++..
T Consensus 121 H~dikp~NIl~~-~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~ 171 (260)
T PF00069_consen 121 HRDIKPENILLD-ENGEVKLIDFGSSVKLSENNENFNPFVGTPEYMAPEVLQ 171 (260)
T ss_dssp ESSBSGGGEEES-TTSEEEESSGTTTEESTSTTSEBSSSSSSGGGSCHHHHT
T ss_pred cccccccccccc-ccccccccccccccccccccccccccccccccccccccc
Confidence 478899999999 699999999999853 222222233344456677766
No 146
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=32.75 E-value=5.7e+02 Score=33.20 Aligned_cols=137 Identities=13% Similarity=0.114 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCCchhHHHHHhhhhHHhhhcCChHHHHHHhhhhhhhccccccccchhh
Q 001139 403 LGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAESRSSNSRIILENYLKPAVSFSEDQRTTDKKS 482 (1143)
Q Consensus 403 ~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a~~~~llg~Wlaesr~e~~~~I~~~Y~~~a~~~~~~~~~~~~~~ 482 (1143)
...+-.|..+.+.|+...|..++.+++...+...
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~---------------------------------------------- 173 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNP---------------------------------------------- 173 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccch----------------------------------------------
Q ss_pred HHHHhhHHhHHHhhHHHHHhhHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHhhhcccCccchhhHHHHHHHHHHhhcHHH
Q 001139 483 IERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQELQKQLAMDREE 562 (1143)
Q Consensus 483 ~~~~~~~~~~lA~f~D~~~~~~~~~l~s~e~~~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~l~k~~~~D~~e 562 (1143)
.+|+.||.-++++.. ++.....--.+..-.++++--|..-......++
T Consensus 174 -----~ay~tL~~IyEqrGd------------------------~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~--- 221 (895)
T KOG2076|consen 174 -----IAYYTLGEIYEQRGD------------------------IEKALNFWLLAAHLNPKDYELWKRLADLSEQLG--- 221 (895)
T ss_pred -----hhHHHHHHHHHHccc------------------------HHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc---
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHhccCCCcchhhHHHHHhhhccCCCcHHHHHHHHHhhcccCccch
Q 001139 563 AQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMVDTIDEVQSYKF 628 (1143)
Q Consensus 563 ~~~l~~~~~~fl~~Al~~Yl~sL~~~~~~~~~~~~RllsLWf~~~~~~~v~~~l~~~~~~ip~~k~ 628 (1143)
++.+|.-||-++|++.+. +.+.+.+=.+|.-+.|......+...+.+...|+.-|
T Consensus 222 ----------~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~ 276 (895)
T KOG2076|consen 222 ----------NINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDI 276 (895)
T ss_pred ----------cHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhH
No 147
>PRK12370 invasion protein regulator; Provisional
Probab=32.69 E-value=2.7e+02 Score=34.72 Aligned_cols=57 Identities=16% Similarity=-0.066 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhhCCChhhHhhccc-----ccc----hhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 61 RHIEILVSAVTQINEPDSLYGIIQ-----SHK----LSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 61 ~~~e~L~~iY~~L~epD~~~Gi~~-----~~~----l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
...-.|-.+|...+++|.+.-... .++ ......-|...|++++|+.+|+.+++.+|.
T Consensus 339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~ 404 (553)
T PRK12370 339 QALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT 404 (553)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 334445556666666665544432 111 233455566667777777777766665554
No 148
>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY). The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process
Probab=32.40 E-value=35 Score=37.06 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.7
Q ss_pred CCCCCCceEEecCCCeEEEeecch
Q 001139 967 GDRHAMNILIDQATAEVVHIDLGV 990 (1143)
Q Consensus 967 gDRh~~NIll~~~tG~v~hiDfg~ 990 (1143)
||=||+|++++ .|++.-|||+.
T Consensus 159 GD~hpgNFlv~--~~~i~iID~~~ 180 (229)
T PF06176_consen 159 GDPHPGNFLVS--NNGIRIIDTQG 180 (229)
T ss_pred CCCCcCcEEEE--CCcEEEEECcc
Confidence 99999999999 57799999974
No 149
>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]
Probab=32.12 E-value=27 Score=40.12 Aligned_cols=34 Identities=26% Similarity=0.452 Sum_probs=26.4
Q ss_pred HHHHHhhcc----CCCCCCceEEecCCCeEEEeecchhh
Q 001139 958 SMVGYIVGL----GDRHAMNILIDQATAEVVHIDLGVAF 992 (1143)
Q Consensus 958 Si~~yilgl----gDRh~~NIll~~~tG~v~hiDfg~~f 992 (1143)
+.++|+=.. .|--|+|||+|. .|.|.=.|||.|=
T Consensus 136 lAL~~LH~~gIiyRDlKPENILLd~-~GHi~LtDFgL~k 173 (357)
T KOG0598|consen 136 LALGYLHSKGIIYRDLKPENILLDE-QGHIKLTDFGLCK 173 (357)
T ss_pred HHHHHHHhCCeeeccCCHHHeeecC-CCcEEEeccccch
Confidence 345555332 488899999995 9999999999884
No 150
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=32.08 E-value=28 Score=38.46 Aligned_cols=59 Identities=27% Similarity=0.307 Sum_probs=39.8
Q ss_pred CCCCCCceEEecCCCeEEEeecchhh------ccccC-CCCCCCCCccccHHHH--------hhhcccccc---cchH
Q 001139 967 GDRHAMNILIDQATAEVVHIDLGVAF------EQGLM-LKTPERVPFRLTRDII--------DGMGVTGVE---GVFR 1026 (1143)
Q Consensus 967 gDRh~~NIll~~~tG~v~hiDfg~~f------~~~~~-l~~pE~VPFRLT~~i~--------~~~g~~g~e---G~F~ 1026 (1143)
-|--|+|||+|+ +|.|=--|||+|= .+..- -=.|=..|=|++|+=- =-+|++-.| |.|.
T Consensus 192 RDvKPSNILldr-~G~vKLCDFGIcGqLv~SiAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fP 268 (361)
T KOG1006|consen 192 RDVKPSNILLDR-HGDVKLCDFGICGQLVDSIAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFP 268 (361)
T ss_pred ccCChhheEEec-CCCEeeecccchHhHHHHHHhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCC
Confidence 578899999997 9999999999982 12110 1246667778887643 235665554 6664
No 151
>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves
Probab=31.97 E-value=37 Score=32.89 Aligned_cols=25 Identities=40% Similarity=0.372 Sum_probs=22.6
Q ss_pred CCCCCCceEEecCCCeEEEeecchhh
Q 001139 967 GDRHAMNILIDQATAEVVHIDLGVAF 992 (1143)
Q Consensus 967 gDRh~~NIll~~~tG~v~hiDfg~~f 992 (1143)
||=+|+|||++. +|.+.=+|||.+.
T Consensus 113 ~Dl~~~Nil~~~-~~~~~l~Df~~~~ 137 (155)
T cd05120 113 GDLHPGNILVDD-GKILGIIDWEYAG 137 (155)
T ss_pred cCCCcceEEEEC-CcEEEEEeccccc
Confidence 899999999997 8999999998764
No 152
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=31.73 E-value=1.3e+03 Score=30.10 Aligned_cols=88 Identities=10% Similarity=-0.014 Sum_probs=64.2
Q ss_pred HHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---c
Q 001139 16 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H---K 87 (1143)
Q Consensus 16 ~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~---~ 87 (1143)
..+|.++..-+-+..|+-+++..+... | ..+...-.|..++...++++.+.-.... + .
T Consensus 53 ~~lA~~~~~~g~~~~A~~~~~~al~~~--------P------~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~ 118 (765)
T PRK10049 53 AAVAVAYRNLKQWQNSLTLWQKALSLE--------P------QNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN 118 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--------C------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 567888888888888888888755321 1 1234445677888888888887776542 1 1
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 88 LSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 88 l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
......-|...|+.++|+.+|+.++...|+
T Consensus 119 ~~~la~~l~~~g~~~~Al~~l~~al~~~P~ 148 (765)
T PRK10049 119 LLALAYVYKRAGRHWDELRAMTQALPRAPQ 148 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 345666889999999999999999998775
No 153
>PRK11189 lipoprotein NlpI; Provisional
Probab=31.47 E-value=1.3e+02 Score=34.13 Aligned_cols=79 Identities=11% Similarity=-0.030 Sum_probs=51.5
Q ss_pred HHHHHHHhhCCChhhHhhcccc-----c----chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCC
Q 001139 64 EILVSAVTQINEPDSLYGIIQS-----H----KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPS 134 (1143)
Q Consensus 64 e~L~~iY~~L~epD~~~Gi~~~-----~----~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~ 134 (1143)
--+-.+|..+++.+........ + ........|...|++++|+.+|+.+++.+|+
T Consensus 68 ~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~----------------- 130 (296)
T PRK11189 68 YERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT----------------- 130 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----------------
Confidence 3455567777777665544321 1 1346677889999999999999999887665
Q ss_pred cCCCCCcchhhhhhcchhhhHHHHHHhhchhhHHHHHH
Q 001139 135 VHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYC 172 (1143)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~~~~ 172 (1143)
....+.++-.++...|.++......
T Consensus 131 -------------~~~a~~~lg~~l~~~g~~~eA~~~~ 155 (296)
T PRK11189 131 -------------YNYAYLNRGIALYYGGRYELAQDDL 155 (296)
T ss_pred -------------CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 1223455666777778776664433
No 154
>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins. This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain
Probab=31.32 E-value=36 Score=36.09 Aligned_cols=32 Identities=22% Similarity=0.143 Sum_probs=24.9
Q ss_pred HHHhhccCCCCCCceEEecC-CCeEEEeecchh
Q 001139 960 VGYIVGLGDRHAMNILIDQA-TAEVVHIDLGVA 991 (1143)
Q Consensus 960 ~~yilglgDRh~~NIll~~~-tG~v~hiDfg~~ 991 (1143)
.-..+-=||=||+||+++.+ +|.+.=|||+.+
T Consensus 172 ~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~ 204 (223)
T cd05154 172 SRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELA 204 (223)
T ss_pred CCcEEEECCCCcccEEEcCCCCcEEEEEecccc
Confidence 34566679999999999975 455677999865
No 155
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=31.18 E-value=90 Score=37.05 Aligned_cols=111 Identities=15% Similarity=0.067 Sum_probs=66.9
Q ss_pred cchHHHHHHHHHhhCCChhhHhhcccc----------cc-hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCC
Q 001139 59 LPRHIEILVSAVTQINEPDSLYGIIQS----------HK-LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGAL 127 (1143)
Q Consensus 59 ~~~~~e~L~~iY~~L~epD~~~Gi~~~----------~~-l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~ 127 (1143)
.+..-|+-..|-.++++-|-...-.+- +. +....+-++|+|.++.|++..--+ + |.+
T Consensus 286 ~~~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~-----~-------~~~ 353 (831)
T PRK15180 286 QDQIREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDV-----E-------KII 353 (831)
T ss_pred CcchhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhch-----h-------hhh
Confidence 344556777788888888876655321 22 355667789999998887763111 1 000
Q ss_pred CCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHHHHHHhhhccccCCCCCCcchhHHHHHHHHcCCCC
Q 001139 128 SPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNW 202 (1143)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~eaAWrl~~W 202 (1143)
.. ......-+||+++.||-|++....+.++....- .++++-..++-+|-.||-.
T Consensus 354 ~s------------------~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ei---e~~ei~~iaa~sa~~l~~~ 407 (831)
T PRK15180 354 GT------------------TDSTLRCRLRSLHGLARWREALSTAEMMLSNEI---EDEEVLTVAAGSADALQLF 407 (831)
T ss_pred cC------------------CchHHHHHHHhhhchhhHHHHHHHHHHHhcccc---CChhheeeecccHHHHhHH
Confidence 00 112346789999999999999888888765432 2344444444444444433
No 156
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=30.71 E-value=3.3e+02 Score=27.11 Aligned_cols=68 Identities=10% Similarity=-0.084 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC
Q 001139 359 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYES 434 (1143)
Q Consensus 359 ~~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~ 434 (1143)
....|...+.++-..|++..|.....++..+.. ....+.+..+..+-..|+...|+..++..+...+.
T Consensus 57 ~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p--------~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 57 SWRAHIALAGTWMMLKEYTTAINFYGHALMLDA--------SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 356678888899999999999999888866532 12234567888899999999999999887765443
No 157
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=30.65 E-value=1.7e+02 Score=32.94 Aligned_cols=50 Identities=18% Similarity=0.211 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhCCChhhHhhcccccchhhHHHHHHhh-CCHHHHHHHHHHHHhhhh
Q 001139 62 HIEILVSAVTQINEPDSLYGIIQSHKLSSQIVTLEHE-GNWSKALEYYELQVRSDV 116 (1143)
Q Consensus 62 ~~e~L~~iY~~L~epD~~~Gi~~~~~l~~~i~~yE~~-g~w~~Al~~Ye~~l~~~~ 116 (1143)
.++--+++|...+.|+.+..+ +.....-||.. |++++|+.+|+.+...-.
T Consensus 96 ~~~~A~~~y~~~G~~~~aA~~-----~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~ 146 (282)
T PF14938_consen 96 CYEKAIEIYREAGRFSQAAKC-----LKELAEIYEEQLGDYEKAIEYYQKAAELYE 146 (282)
T ss_dssp HHHHHHHHHHHCT-HHHHHHH-----HHHHHHHHCCTT--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 344555666666666665443 45677789999 999999999999987543
No 158
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=29.75 E-value=63 Score=21.23 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=22.3
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 001139 90 SQIVTLEHEGNWSKALEYYELQVRSDV 116 (1143)
Q Consensus 90 ~~i~~yE~~g~w~~Al~~Ye~~l~~~~ 116 (1143)
.....|.+.|++++|..+|+..+...|
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 456788999999999999998876543
No 159
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=29.00 E-value=98 Score=24.48 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=28.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccCCCchhHHHHH
Q 001139 405 RLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRL 444 (1143)
Q Consensus 405 ~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a~~~~l 444 (1143)
++..|+.+-..|+.+.|..+|++++...+ .....++..+
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~~-~~q~~eA~~L 40 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEEGD-EAQRQEARAL 40 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHcCC-HHHHHHHHHH
Confidence 46789999999999999999999985432 2334444433
No 160
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=28.65 E-value=4.1e+02 Score=29.23 Aligned_cols=79 Identities=14% Similarity=0.035 Sum_probs=60.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCCchhHHH
Q 001139 363 LLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVY 442 (1143)
Q Consensus 363 wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a~~~ 442 (1143)
+-.-|..+-+.|+++.|...+.++...- |.+ +....+.+..|...-..|+...|+...+.+++..+..+..+.++
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s---~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRY--PFG---PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCC---hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3445667778999999999988876432 111 22223457889999999999999999999999998888888887
Q ss_pred HHhh
Q 001139 443 RLVG 446 (1143)
Q Consensus 443 ~llg 446 (1143)
.++|
T Consensus 110 Y~~g 113 (243)
T PRK10866 110 YMRG 113 (243)
T ss_pred HHHH
Confidence 7777
No 161
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=28.64 E-value=9.2e+02 Score=27.46 Aligned_cols=65 Identities=18% Similarity=0.029 Sum_probs=42.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHhhcCCCC-CCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001139 366 SASTLRKGFRLSQAAAALHELKFLYTGPG-DQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISE 430 (1143)
Q Consensus 366 ~a~laRk~g~~~~A~~aL~~l~~l~~~~~-~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~ 430 (1143)
.+..+-..|+...|...|..+........ ...........+-.|-..|.+|+...|+..|...+.
T Consensus 270 ~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 270 AALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666678888888888877765432200 000000112346789999999999999999987654
No 162
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=28.58 E-value=3.2e+02 Score=27.02 Aligned_cols=62 Identities=27% Similarity=0.216 Sum_probs=46.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHH
Q 001139 362 HLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYI 428 (1143)
Q Consensus 362 ~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l 428 (1143)
..+..|+.+-..|.++.|...+..+..-. ++ ......+.+-.|+++..+|+.+.|+..|+.+
T Consensus 50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~--~d---~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~ 111 (145)
T PF09976_consen 50 AALQLAKAAYEQGDYDEAKAALEKALANA--PD---PELKPLARLRLARILLQQGQYDEALATLQQI 111 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 35667888889999999999998874321 11 1113456788999999999999999999663
No 163
>PF02202 Tachykinin: Tachykinin family; InterPro: IPR002040 This family includes peptides, which belong to the tachykinin family. Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. Tachykinins, like most other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Tachykinins are from ten to twelve residues long.; GO: 0007217 tachykinin receptor signaling pathway, 0007268 synaptic transmission; PDB: 1MYU_A 1N6T_A 2GFR_A.
Probab=28.43 E-value=26 Score=19.35 Aligned_cols=9 Identities=44% Similarity=1.184 Sum_probs=7.0
Q ss_pred CChhhHhhc
Q 001139 74 NEPDSLYGI 82 (1143)
Q Consensus 74 ~epD~~~Gi 82 (1143)
..||.|||+
T Consensus 2 p~pd~F~GL 10 (11)
T PF02202_consen 2 PKPDQFYGL 10 (11)
T ss_dssp -CHHHHCCC
T ss_pred CCcccceec
Confidence 369999996
No 164
>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes. ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo
Probab=28.41 E-value=44 Score=36.12 Aligned_cols=32 Identities=22% Similarity=0.158 Sum_probs=26.6
Q ss_pred HHhhccCCCCCCceEEecCCCeEEEeecchhh
Q 001139 961 GYIVGLGDRHAMNILIDQATAEVVHIDLGVAF 992 (1143)
Q Consensus 961 ~yilglgDRh~~NIll~~~tG~v~hiDfg~~f 992 (1143)
..+|.=||=|++|||++..+|.+.=|||-++-
T Consensus 169 ~~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~ 200 (235)
T cd05157 169 PIVFCHNDLLSGNIIYNEEKNSVKFIDYEYAG 200 (235)
T ss_pred CEEEEcCCCCcCcEEEeCCCCCEEEEEcccCC
Confidence 35677799999999999656889999998653
No 165
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=28.31 E-value=58 Score=29.29 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.1
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhh
Q 001139 90 SQIVTLEHEGNWSKALEYYELQVRS 114 (1143)
Q Consensus 90 ~~i~~yE~~g~w~~Al~~Ye~~l~~ 114 (1143)
.++..+|-.|.+++|+.+|+..++.
T Consensus 13 ~kaL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 13 SKALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHhhhhhcCCHHHHHHHHHHHHHH
Confidence 5778899999999999999998764
No 166
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=28.13 E-value=68 Score=38.95 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=26.5
Q ss_pred HHHHHHhhccC----CCCCCceEEecCCCeEEEeecchh
Q 001139 957 SSMVGYIVGLG----DRHAMNILIDQATAEVVHIDLGVA 991 (1143)
Q Consensus 957 ~Si~~yilglg----DRh~~NIll~~~tG~v~hiDfg~~ 991 (1143)
.+-+-|+=+.| |--|+|||||. +|++--.|||-+
T Consensus 184 ldAleylH~~GIIHRDlKPENILLd~-dmhikITDFGsA 221 (604)
T KOG0592|consen 184 LDALEYLHSNGIIHRDLKPENILLDK-DGHIKITDFGSA 221 (604)
T ss_pred HHHHHHHHhcCceeccCChhheeEcC-CCcEEEeecccc
Confidence 34455665554 67799999996 999999999965
No 167
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=27.80 E-value=75 Score=23.53 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=22.9
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 001139 88 LSSQIVTLEHEGNWSKALEYYELQVRSD 115 (1143)
Q Consensus 88 l~~~i~~yE~~g~w~~Al~~Ye~~l~~~ 115 (1143)
+......|...|+|++|+.+|+..+...
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4567788999999999999999998753
No 168
>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2.7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....
Probab=27.52 E-value=35 Score=36.41 Aligned_cols=30 Identities=33% Similarity=0.375 Sum_probs=21.8
Q ss_pred HhhccCCCCCCceEEecCCCeEEEeecchh
Q 001139 962 YIVGLGDRHAMNILIDQATAEVVHIDLGVA 991 (1143)
Q Consensus 962 yilglgDRh~~NIll~~~tG~v~hiDfg~~ 991 (1143)
.++.=+|-+++|||++..+|++.-|||-++
T Consensus 143 ~v~cHnDl~~~Nil~~~~~~~~~lIDfEya 172 (211)
T PF01633_consen 143 LVFCHNDLNPGNILINNKDGEVKLIDFEYA 172 (211)
T ss_dssp EEEE-S--SGGGEEETSSSSCEEE--GTT-
T ss_pred ceEeeccCccccEEeccCCCeEEEecHHHH
Confidence 678889999999999777999999999876
No 169
>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members. The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista
Probab=27.49 E-value=45 Score=36.27 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=22.4
Q ss_pred HHhhccCCCCCCceEEecCCCeE-EEeecchh
Q 001139 961 GYIVGLGDRHAMNILIDQATAEV-VHIDLGVA 991 (1143)
Q Consensus 961 ~yilglgDRh~~NIll~~~tG~v-~hiDfg~~ 991 (1143)
.+.|-=||=|++|||++ .|++ --|||+.+
T Consensus 163 ~~~l~HGD~~~~Nvlv~--~~~i~giIDw~~a 192 (235)
T cd05155 163 PPVWFHGDLAPGNLLVQ--DGRLSAVIDFGCL 192 (235)
T ss_pred CceEEeCCCCCCcEEEE--CCCEEEEEeCccc
Confidence 34455699999999998 3565 48999975
No 170
>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172. This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.
Probab=27.33 E-value=42 Score=36.54 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=21.4
Q ss_pred ccCCCCCCceEEecCCCeEEEeecchh
Q 001139 965 GLGDRHAMNILIDQATAEVVHIDLGVA 991 (1143)
Q Consensus 965 glgDRh~~NIll~~~tG~v~hiDfg~~ 991 (1143)
-=||=||.||+++. +| +.=|||+.+
T Consensus 156 ~HgD~~~~Nii~~~-~~-~~iIDwe~a 180 (226)
T TIGR02172 156 LHGDFQIGNLITSG-KG-TYWIDLGDF 180 (226)
T ss_pred EecCCCCCcEEEcC-CC-cEEEechhc
Confidence 46999999999995 66 999999875
No 171
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=27.12 E-value=2.9e+02 Score=29.31 Aligned_cols=89 Identities=8% Similarity=0.051 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHH-HhhCCCh--hhHhhccc-----c-
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSA-VTQINEP--DSLYGIIQ-----S- 85 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~i-Y~~L~ep--D~~~Gi~~-----~- 85 (1143)
+..+|.....-+.|..|+-.++..+.-. | ..++..-.+-.+ |...++. +...-+.. .
T Consensus 76 w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--------P------~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP 141 (198)
T PRK10370 76 WALLGEYYLWRNDYDNALLAYRQALQLR--------G------ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA 141 (198)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--------C------CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 4568889999999999999998754321 1 124444556664 5666662 33333322 1
Q ss_pred ---cchhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 86 ---HKLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 86 ---~~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
..+.....-|...|+|++|..+|+..++..|.
T Consensus 142 ~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 142 NEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 12456778899999999999999999987554
No 172
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=26.34 E-value=1.1e+02 Score=20.90 Aligned_cols=22 Identities=41% Similarity=0.445 Sum_probs=19.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHH
Q 001139 405 RLEEAKLLRAQGQHEMAINLAK 426 (1143)
Q Consensus 405 ~lE~Ak~lW~~Ge~~~Ai~~Lk 426 (1143)
.+..|.++|.+|+...|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4678999999999999998875
No 173
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=26.31 E-value=4.8e+02 Score=29.18 Aligned_cols=81 Identities=19% Similarity=0.153 Sum_probs=56.9
Q ss_pred HHHHHHH-HHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCCchhH
Q 001139 362 HLLESAS-TLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPD 440 (1143)
Q Consensus 362 ~wl~~a~-laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a~ 440 (1143)
.+...|- +..+.|++..|..++..+...- |+..- ...+.+-.+++++.+|+...|+...+.++.+.+.....++
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~---a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTY---QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 3444444 3356799999998877764432 22111 1235677999999999999999999999998887766677
Q ss_pred HHHHhhh
Q 001139 441 VYRLVGK 447 (1143)
Q Consensus 441 ~~~llg~ 447 (1143)
++..+|.
T Consensus 219 Al~klg~ 225 (263)
T PRK10803 219 AMFKVGV 225 (263)
T ss_pred HHHHHHH
Confidence 7766654
No 174
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=26.30 E-value=1.8e+02 Score=28.91 Aligned_cols=96 Identities=15% Similarity=0.110 Sum_probs=56.9
Q ss_pred CChhhHhhcccccchhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhh
Q 001139 74 NEPDSLYGIIQSHKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYK 153 (1143)
Q Consensus 74 ~epD~~~Gi~~~~~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (1143)
+.|++.|+.... -.....+-..|++++|...|+..+...++ .........
T Consensus 40 ~~~~s~ya~~A~---l~lA~~~~~~g~~~~A~~~l~~~~~~~~d---------------------------~~l~~~a~l 89 (145)
T PF09976_consen 40 DYPSSPYAALAA---LQLAKAAYEQGDYDEAKAALEKALANAPD---------------------------PELKPLARL 89 (145)
T ss_pred HCCCChHHHHHH---HHHHHHHHHCCCHHHHHHHHHHHHhhCCC---------------------------HHHHHHHHH
Confidence 355555555432 23455666789999999999999886543 001223456
Q ss_pred hHHHHHHhhchhhHHHHHHhhhccccCCCCCCcchhHHHHHHHHcCCCCC
Q 001139 154 GLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWD 203 (1143)
Q Consensus 154 gllrcL~~LG~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~eaAWrl~~Wd 203 (1143)
.+.+++...|.++......+..... ...+....+.-+...+.|+|+
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~----~~~~~~~~~~Gdi~~~~g~~~ 135 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDE----AFKALAAELLGDIYLAQGDYD 135 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCc----chHHHHHHHHHHHHHHCCCHH
Confidence 7788999999988876655432111 112223334455555555555
No 175
>cd00180 PKc Catalytic domain of Protein Kinases. Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which
Probab=25.67 E-value=4.6e+02 Score=26.38 Aligned_cols=30 Identities=27% Similarity=0.308 Sum_probs=25.1
Q ss_pred hccCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 964 VGLGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 964 lglgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
+--||-+|+||+++..+|++.=+|||.+-.
T Consensus 113 ~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~ 142 (215)
T cd00180 113 IIHRDLKPENILLDSDNGKVKLADFGLSKL 142 (215)
T ss_pred eeccCCCHhhEEEeCCCCcEEEecCCceEE
Confidence 345899999999997689999999998743
No 176
>PF01386 Ribosomal_L25p: Ribosomal L25p family; InterPro: IPR020055 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry models the short-form of the ribosomal L25 protein. The long-form has homology to the general stress protein Ctc of Bacillus subtilis, a mesophile, and ribosomal protein TL5 of Thermus thermophilus, a thermophile. Ribosomal protein L25 of Escherichia coli and Haemophilus influenzae appear to be orthologous but consist only of the N-terminal half of Ctc and TL5. Both short (L25-like) and full-length (CTC-like) members of this family bind the E-loop of bacterial 5S rRNA.; GO: 0003735 structural constituent of ribosome, 0008097 5S rRNA binding, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2HGQ_Y 2HGJ_Y 2Y19_Z 2WRL_Z 3KIT_Z 2WH2_Z 2WDN_Z 3V25_Z 3HUZ_Z 3KIY_Z ....
Probab=25.26 E-value=51 Score=30.17 Aligned_cols=16 Identities=25% Similarity=0.598 Sum_probs=13.1
Q ss_pred ceEEecCCCeEEEeec
Q 001139 973 NILIDQATAEVVHIDL 988 (1143)
Q Consensus 973 NIll~~~tG~v~hiDf 988 (1143)
.|-.|+-|++++||||
T Consensus 73 evQ~~p~~~~i~HvDF 88 (88)
T PF01386_consen 73 EVQRDPVTDKILHVDF 88 (88)
T ss_dssp EEEEESSSSSEEEEEE
T ss_pred eeeeCCCCCCeEeccC
Confidence 4567888999999998
No 177
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=25.11 E-value=2.9e+02 Score=32.83 Aligned_cols=112 Identities=9% Similarity=0.052 Sum_probs=68.4
Q ss_pred HHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhC--CChhhHhhccc--------c
Q 001139 16 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQI--NEPDSLYGIIQ--------S 85 (1143)
Q Consensus 16 ~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L--~epD~~~Gi~~--------~ 85 (1143)
..+|..-..+|.+..|+-.++.......+. +...-.+...|..+ ++++...-... .
T Consensus 267 ~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~--------------~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~ 332 (409)
T TIGR00540 267 IALAEHLIDCDDHDSAQEIIFDGLKKLGDD--------------RAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK 332 (409)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCCc--------------ccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC
Confidence 357788999999999999999876432110 10000123333333 34444333321 1
Q ss_pred c--c-hhhHHHHHHhhCCHHHHHHHHH--HHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHH
Q 001139 86 H--K-LSSQIVTLEHEGNWSKALEYYE--LQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQ 160 (1143)
Q Consensus 86 ~--~-l~~~i~~yE~~g~w~~Al~~Ye--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~ 160 (1143)
+ . +.....-|-++|+|++|..++| ..++..|+ .+...++..-+.
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~-------------------------------~~~~~~La~ll~ 381 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD-------------------------------ANDLAMAADAFD 381 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC-------------------------------HHHHHHHHHHHH
Confidence 2 1 2356778899999999999999 46655443 122447778888
Q ss_pred hhchhhHHHHHH
Q 001139 161 QVGCMHVLDMYC 172 (1143)
Q Consensus 161 ~LG~~~~l~~~~ 172 (1143)
.+|..+....+.
T Consensus 382 ~~g~~~~A~~~~ 393 (409)
T TIGR00540 382 QAGDKAEAAAMR 393 (409)
T ss_pred HcCCHHHHHHHH
Confidence 899877775554
No 178
>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases. Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core
Probab=24.56 E-value=2.5e+02 Score=29.75 Aligned_cols=53 Identities=26% Similarity=0.365 Sum_probs=36.0
Q ss_pred hccCCCCCCceEEecCCCeEEEeecchhhccccCC--CCCCCCCccccHHHHhhhc
Q 001139 964 VGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML--KTPERVPFRLTRDIIDGMG 1017 (1143)
Q Consensus 964 lglgDRh~~NIll~~~tG~v~hiDfg~~f~~~~~l--~~pE~VPFRLT~~i~~~~g 1017 (1143)
+--||-+|+||+++. +|.+.=+|||.+...+... ..+...+.-+.|++.....
T Consensus 119 i~h~dl~p~ni~i~~-~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~ 173 (253)
T cd05122 119 IIHRDIKAANILLTS-DGEVKLIDFGLSAQLSDTKARNTMVGTPYWMAPEVINGKP 173 (253)
T ss_pred EecCCCCHHHEEEcc-CCeEEEeeccccccccccccccceecCCcccCHHHHcCCC
Confidence 456999999999996 8999999999876544321 2222334445677665443
No 179
>PRK12370 invasion protein regulator; Provisional
Probab=24.52 E-value=3.8e+02 Score=33.42 Aligned_cols=125 Identities=6% Similarity=-0.150 Sum_probs=69.9
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHHHH
Q 001139 91 QIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDM 170 (1143)
Q Consensus 91 ~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~~ 170 (1143)
...-|...|++++|..+|+.+++.+|+ +...+..+-.++...|.++....
T Consensus 344 lg~~~~~~g~~~~A~~~~~~Al~l~P~------------------------------~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 344 LGLINTIHSEYIVGSLLFKQANLLSPI------------------------------SADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCC------------------------------CHHHHHHHHHHHHHCCCHHHHHH
Confidence 345677889999999999999998775 12344556678888999988766
Q ss_pred HHhhhccccCCCCCCcchhHHHHHHHHcCCCCCCCcccCCCCCCCCCCCccchhhhhHHHHHHHHhcCChHHHHHHHHHH
Q 001139 171 YCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRKLKHS 250 (1143)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~~~~~~eaAWrl~~Wd~~~~~~~~~~~~~~~~~~~~f~~~l~~~L~al~~~d~~~~~~~l~~a 250 (1143)
+.+.....++ . .+........+.-..|+++...... ........+........+..+ -...|+.+++...+.+.
T Consensus 394 ~~~~Al~l~P--~-~~~~~~~~~~~~~~~g~~eeA~~~~-~~~l~~~~p~~~~~~~~la~~--l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 394 TINECLKLDP--T-RAAAGITKLWITYYHTGIDDAIRLG-DELRSQHLQDNPILLSMQVMF--LSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHHhcCC--C-ChhhHHHHHHHHHhccCHHHHHHHH-HHHHHhccccCHHHHHHHHHH--HHhCCCHHHHHHHHHHh
Confidence 6554322221 1 1111112233455578776432211 000000012222233333333 34579999998887654
Q ss_pred H
Q 001139 251 K 251 (1143)
Q Consensus 251 R 251 (1143)
.
T Consensus 468 ~ 468 (553)
T PRK12370 468 S 468 (553)
T ss_pred h
Confidence 3
No 180
>cd05153 HomoserineK_II Homoserine Kinase, type II. Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.
Probab=24.06 E-value=55 Score=36.87 Aligned_cols=29 Identities=28% Similarity=0.068 Sum_probs=22.8
Q ss_pred HhhccCCCCCCceEEecCCCeEEEeecchh
Q 001139 962 YIVGLGDRHAMNILIDQATAEVVHIDLGVA 991 (1143)
Q Consensus 962 yilglgDRh~~NIll~~~tG~v~hiDfg~~ 991 (1143)
+.+-=||-||+|||++. ++-+.-|||+.+
T Consensus 175 ~~l~HgD~~~~Nil~~~-~~~~~iIDfe~a 203 (296)
T cd05153 175 RGVIHADLFRDNVLFDG-DELSGVIDFYFA 203 (296)
T ss_pred CcCCccCcCcccEEEeC-CceEEEeehhhh
Confidence 34556999999999995 555579999865
No 181
>PRK10271 thiK thiamine kinase; Provisional
Probab=24.00 E-value=60 Score=34.31 Aligned_cols=34 Identities=21% Similarity=0.059 Sum_probs=27.1
Q ss_pred HHHHHhhccCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 958 SMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 958 Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
+-+..++.=||-||+||++.. +| +.=|||+++=.
T Consensus 73 ~~l~~~p~H~D~~~~N~~~~~-~~-~~lIDwe~a~~ 106 (188)
T PRK10271 73 RPLRLAPLHMDVHAGNLVHSA-SG-LRLIDWEYAGD 106 (188)
T ss_pred CCCCeeeecCCCCCccEEEEC-CC-EEEEeCCcccC
Confidence 445678888999999999874 55 99999997633
No 182
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=23.80 E-value=1e+02 Score=38.16 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.9
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhh
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAF 992 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f 992 (1143)
=||-+|+|||+ .+|++.=||||.+-
T Consensus 451 HrDlkp~NILl--~~~~~~liDFGla~ 475 (535)
T PRK09605 451 HGDLTTSNFIV--RDDRLYLIDFGLGK 475 (535)
T ss_pred cCCCChHHEEE--ECCcEEEEeCcccc
Confidence 48999999999 48999999999863
No 183
>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]
Probab=23.67 E-value=51 Score=35.21 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=22.0
Q ss_pred CCCCCCceEEecCCCeEEEeecchh
Q 001139 967 GDRHAMNILIDQATAEVVHIDLGVA 991 (1143)
Q Consensus 967 gDRh~~NIll~~~tG~v~hiDfg~~ 991 (1143)
-|--|+|||||. .|+|=-.|||++
T Consensus 173 RDvKPsNiLIn~-~GqVKiCDFGIs 196 (282)
T KOG0984|consen 173 RDVKPSNILINY-DGQVKICDFGIS 196 (282)
T ss_pred ccCCcceEEEcc-CCcEEEcccccc
Confidence 588999999996 999999999986
No 184
>PRK11189 lipoprotein NlpI; Provisional
Probab=23.41 E-value=3e+02 Score=31.19 Aligned_cols=87 Identities=13% Similarity=-0.031 Sum_probs=59.9
Q ss_pred HHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----cc----
Q 001139 17 RVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----HK---- 87 (1143)
Q Consensus 17 ~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~~---- 87 (1143)
.+|.+-..-|-+..|+..++..+.. . +..+...-.|-.+|...++.|.+...... +.
T Consensus 69 ~~g~~~~~~g~~~~A~~~~~~Al~l--------~------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a 134 (296)
T PRK11189 69 ERGVLYDSLGLRALARNDFSQALAL--------R------PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA 134 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHc--------C------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4455555556666666655543321 1 22355667788999999999998876432 21
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 88 LSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 88 l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
...+..-|.+.|++++|+..++..++..|+
T Consensus 135 ~~~lg~~l~~~g~~~eA~~~~~~al~~~P~ 164 (296)
T PRK11189 135 YLNRGIALYYGGRYELAQDDLLAFYQDDPN 164 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 345667788899999999999999987665
No 185
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=23.21 E-value=1.3e+02 Score=20.86 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=24.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccC
Q 001139 405 RLEEAKLLRAQGQHEMAINLAKYISENYES 434 (1143)
Q Consensus 405 ~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~ 434 (1143)
.+..|.++-..|+...|+..++.++.+.+.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 356777777889999999999999887653
No 186
>PF07804 HipA_C: HipA-like C-terminal domain; InterPro: IPR012893 The members of this entry are similar to a region close to the C terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 3AKL_D 3AKJ_B 3AKK_D 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=22.80 E-value=90 Score=27.74 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=22.1
Q ss_pred HHhhhhHHHHHHhhccCCCCCCceEEecCCCe
Q 001139 951 TRSVAASSMVGYIVGLGDRHAMNILIDQATAE 982 (1143)
Q Consensus 951 ~~S~A~~Si~~yilglgDRh~~NIll~~~tG~ 982 (1143)
.+.+.-+-++++++|=+|+|..|+=|=..+|.
T Consensus 40 ~~~l~~~~~fn~ligN~D~H~kN~s~l~~~~~ 71 (79)
T PF07804_consen 40 VRELFRRLVFNYLIGNTDRHLKNFSFLYDGGG 71 (79)
T ss_dssp HHHHHHHHHHHHHCTBS---CCCSEEEEECCE
T ss_pred HHHHHHHHHHHHHHcCCcCCcCCEEEEEcCCe
Confidence 34455567889999999999999988776554
No 187
>PRK05231 homoserine kinase; Provisional
Probab=22.67 E-value=60 Score=37.08 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=21.2
Q ss_pred hccCCCCCCceEEecCCCeE-EEeecchh
Q 001139 964 VGLGDRHAMNILIDQATAEV-VHIDLGVA 991 (1143)
Q Consensus 964 lglgDRh~~NIll~~~tG~v-~hiDfg~~ 991 (1143)
+-=||=||+|||++ .|++ .-|||+.+
T Consensus 189 liHgD~~~~Nil~~--~~~~~~iIDf~~~ 215 (319)
T PRK05231 189 VIHADLFRDNVLFE--GDRLSGFIDFYFA 215 (319)
T ss_pred cCCCCCCCCcEEEE--CCceEEEEecccc
Confidence 44599999999999 4565 69999976
No 188
>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase. Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina
Probab=22.28 E-value=1.6e+02 Score=32.09 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=24.7
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
-||-+|+||+++...|.+.-+|||.+..
T Consensus 131 h~dl~p~nil~~~~~~~~~l~dfg~~~~ 158 (268)
T cd06624 131 HRDIKGDNVLVNTYSGVVKISDFGTSKR 158 (268)
T ss_pred ecCCCHHHEEEcCCCCeEEEecchhhee
Confidence 3899999999998889999999998753
No 189
>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2. Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul
Probab=22.28 E-value=50 Score=38.41 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.7
Q ss_pred CCCCCCceEEecCCCeEEEeecchhh
Q 001139 967 GDRHAMNILIDQATAEVVHIDLGVAF 992 (1143)
Q Consensus 967 gDRh~~NIll~~~tG~v~hiDfg~~f 992 (1143)
+|-.|+||||+. +|.+.-+|||.+-
T Consensus 125 rDLkp~NIli~~-~~~vkL~DfG~~~ 149 (360)
T cd05627 125 RDIKPDNLLLDA-KGHVKLSDFGLCT 149 (360)
T ss_pred cCCCHHHEEECC-CCCEEEeeccCCc
Confidence 789999999995 8999999999864
No 190
>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]
Probab=21.81 E-value=63 Score=39.82 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=22.4
Q ss_pred CCCCCCceEEec---CCCeEEEeecchh
Q 001139 967 GDRHAMNILIDQ---ATAEVVHIDLGVA 991 (1143)
Q Consensus 967 gDRh~~NIll~~---~tG~v~hiDfg~~ 991 (1143)
+|=||+||++.+ ..++++-.|||..
T Consensus 325 aDPHPGNilv~~~~~~~~~ivllDhGl~ 352 (538)
T KOG1235|consen 325 ADPHPGNILVRPNPEGDEEIVLLDHGLY 352 (538)
T ss_pred CCCCCCcEEEecCCCCCccEEEEccccc
Confidence 799999999994 5899999999964
No 191
>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=21.48 E-value=80 Score=36.24 Aligned_cols=29 Identities=31% Similarity=0.420 Sum_probs=24.7
Q ss_pred CCCCCCceEEecCCCeEEEeecchhhccc
Q 001139 967 GDRHAMNILIDQATAEVVHIDLGVAFEQG 995 (1143)
Q Consensus 967 gDRh~~NIll~~~tG~v~hiDfg~~f~~~ 995 (1143)
.|--|+|||++..+|.+-=.|||.+....
T Consensus 141 ~DiK~~NiLl~~~~~~~KlaDFG~a~~~~ 169 (313)
T KOG0198|consen 141 CDIKPANILLDPSNGDVKLADFGLAKKLE 169 (313)
T ss_pred cCcccceEEEeCCCCeEEeccCccccccc
Confidence 46668999999878999999999887655
No 192
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=20.87 E-value=1.2e+02 Score=26.10 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=22.5
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHh
Q 001139 88 LSSQIVTLEHEGNWSKALEYYELQVR 113 (1143)
Q Consensus 88 l~~~i~~yE~~g~w~~Al~~Ye~~l~ 113 (1143)
+-.++..++..|++++|+.+|...++
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44678899999999999999988765
No 193
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=20.81 E-value=1.7e+02 Score=34.85 Aligned_cols=58 Identities=17% Similarity=0.287 Sum_probs=45.9
Q ss_pred CCcchHHHHHHHHHhhCCChhhHhhccc-------c--cchhhHHHHHHhhCCHHHHHHHHHHHHhh
Q 001139 57 ETLPRHIEILVSAVTQINEPDSLYGIIQ-------S--HKLSSQIVTLEHEGNWSKALEYYELQVRS 114 (1143)
Q Consensus 57 ~~~~~~~e~L~~iY~~L~epD~~~Gi~~-------~--~~l~~~i~~yE~~g~w~~Al~~Ye~~l~~ 114 (1143)
+++|.++.+-..|+++|++-++.|.... + ..+...++...++|+|+.|+..-+-.+..
T Consensus 320 ~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ 386 (831)
T PRK15180 320 QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSN 386 (831)
T ss_pred CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcc
Confidence 4567788888899999999998886643 1 24677888999999999999987776653
No 194
>PLN02236 choline kinase
Probab=20.77 E-value=73 Score=37.12 Aligned_cols=32 Identities=28% Similarity=0.198 Sum_probs=27.9
Q ss_pred HHhhccCCCCCCceEEecCCCeEEEeecchhh
Q 001139 961 GYIVGLGDRHAMNILIDQATAEVVHIDLGVAF 992 (1143)
Q Consensus 961 ~yilglgDRh~~NIll~~~tG~v~hiDfg~~f 992 (1143)
..++.=||=|++|||++..+|.+.-|||.++.
T Consensus 199 ~~~~cH~Dl~~~Nil~~~~~~~~~lID~Eya~ 230 (344)
T PLN02236 199 EIGFCHNDLQYGNIMIDEETRAITIIDYEYAS 230 (344)
T ss_pred CceEEeCCCCcCcEEEeCCCCcEEEEeehhcc
Confidence 45778899999999999778999999998763
No 195
>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]
Probab=20.67 E-value=66 Score=37.23 Aligned_cols=25 Identities=40% Similarity=0.478 Sum_probs=20.7
Q ss_pred CCCCCCceEEecCCCeEEEeecchh
Q 001139 967 GDRHAMNILIDQATAEVVHIDLGVA 991 (1143)
Q Consensus 967 gDRh~~NIll~~~tG~v~hiDfg~~ 991 (1143)
||=||+|++++..+.=+--|||++|
T Consensus 202 ~D~~~~NVl~d~~~~~~g~iDFdDa 226 (331)
T COG2334 202 GDLHPDNVLFDDDTDVSGFIDFDDA 226 (331)
T ss_pred cCCCccceeEcCCCCeeeEEEcccc
Confidence 8999999999975543567899987
No 196
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=20.62 E-value=98 Score=40.96 Aligned_cols=87 Identities=23% Similarity=0.416 Sum_probs=57.0
Q ss_pred CCCCCCceEEecCCCeEEEeecchhhc---cccC-CCCCCCCCccccHHHHhhhccc----ccc------cc--------
Q 001139 967 GDRHAMNILIDQATAEVVHIDLGVAFE---QGLM-LKTPERVPFRLTRDIIDGMGVT----GVE------GV-------- 1024 (1143)
Q Consensus 967 gDRh~~NIll~~~tG~v~hiDfg~~f~---~~~~-l~~pE~VPFRLT~~i~~~~g~~----g~e------G~-------- 1024 (1143)
-|--|+|||||. .|+|=-.|||-|.- .|.. -.++=-.|==+.|++...||.- |.| |+
T Consensus 199 RDiKPDNvLld~-~GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG 277 (1317)
T KOG0612|consen 199 RDIKPDNVLLDK-SGHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYG 277 (1317)
T ss_pred ccCCcceeEecc-cCcEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcC
Confidence 577899999996 99999999999975 3332 2233334555778888888765 333 32
Q ss_pred ---h-HHHHHHHHHHHhhChHHH------------HHHHHHHccCC
Q 001139 1025 ---F-RRCCEKTLSVMRTNKEAL------------LTIVEVFIHDP 1054 (1143)
Q Consensus 1025 ---F-~~~~~~~~~~Lr~~~~~l------------~~~L~~f~~Dp 1054 (1143)
| ..+...|+.-+..+++.| -++++.|+-||
T Consensus 278 ~TPFYadslveTY~KIm~hk~~l~FP~~~~VSeeakdLI~~ll~~~ 323 (1317)
T KOG0612|consen 278 ETPFYADSLVETYGKIMNHKESLSFPDETDVSEEAKDLIEALLCDR 323 (1317)
T ss_pred CCcchHHHHHHHHHHHhchhhhcCCCcccccCHHHHHHHHHHhcCh
Confidence 2 345666776666665443 45556666554
No 197
>PRK05943 50S ribosomal protein L25; Reviewed
Probab=20.56 E-value=55 Score=30.38 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=12.5
Q ss_pred eEEecCCCeEEEeecc
Q 001139 974 ILIDQATAEVVHIDLG 989 (1143)
Q Consensus 974 Ill~~~tG~v~hiDfg 989 (1143)
|-.|+-||++.||||-
T Consensus 77 vQ~~pv~~~i~HvDF~ 92 (94)
T PRK05943 77 VQRHPFKPKLEHIDFV 92 (94)
T ss_pred eecCcCCCCeEeEeee
Confidence 3457789999999984
No 198
>PF13041 PPR_2: PPR repeat family
Probab=20.42 E-value=1.7e+02 Score=23.04 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=23.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHhh
Q 001139 88 LSSQIVTLEHEGNWSKALEYYELQVRS 114 (1143)
Q Consensus 88 l~~~i~~yE~~g~w~~Al~~Ye~~l~~ 114 (1143)
....+..|-+.|++++|+..|+.-.+.
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 467888999999999999999887654
No 199
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=20.34 E-value=2.3e+02 Score=35.12 Aligned_cols=88 Identities=14% Similarity=0.099 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHHccCChH-------HHHHHHHHHH-----hhcCCCCCCCCch--hhhHHHHHHHHHHHcCChHHHH
Q 001139 357 DFTMQHLLESASTLRKGFRLS-------QAAAALHELK-----FLYTGPGDQCSTV--YWLGRLEEAKLLRAQGQHEMAI 422 (1143)
Q Consensus 357 ~~~~~~wl~~a~laRk~g~~~-------~A~~aL~~l~-----~l~~~~~~~~~~~--~~~~~lE~Ak~lW~~Ge~~~Ai 422 (1143)
+++-.-|...++++|+...+. +=.-.|..+- +++++. ...|. .....+..|+..|..|+.+.|+
T Consensus 533 e~L~~RF~~l~ki~rr~a~l~e~gg~lg~yf~sl~Slfl~~~~q~g~~~--~~~p~~~d~~~iLsrA~~~~~~gdl~~Av 610 (657)
T KOG1854|consen 533 EDLRNRFNTLSKIARRTALLPEEGGFLGQYFLSLQSLFLLSPQQLGNPV--FLDPNITDTYKILSRARYHLLKGDLDDAV 610 (657)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHhhhheeecHhhcCCCc--cCCcccccHHHHHHHHHHHHhcccHHHHH
Confidence 456778999999999854433 1111122221 111110 00111 2234589999999999999999
Q ss_pred HHHHHHHHhccCCCchhHHHHHhhhhHHhhhcC
Q 001139 423 NLAKYISENYESNEEAPDVYRLVGKWLAESRSS 455 (1143)
Q Consensus 423 ~~Lk~l~~~~~~~~~~a~~~~llg~Wlaesr~e 455 (1143)
..++.+-.- -..+-+.|+.++|..
T Consensus 611 r~v~lLkG~---------pr~va~dWi~daRr~ 634 (657)
T KOG1854|consen 611 RVVNLLKGW---------PRKVARDWIKDARRR 634 (657)
T ss_pred HHHHHhccc---------hHHHHHHHHHHHHHH
Confidence 998766321 124567899988754
No 200
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=20.08 E-value=4.3e+02 Score=26.96 Aligned_cols=92 Identities=18% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc---------
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS--------- 85 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~--------- 85 (1143)
+..+|.....=|-|..|+-+++..+....+. .........|..+|..+++.|.+......
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 106 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDP-----------NDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP 106 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-----------chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q ss_pred cchhhHHHHHHhhCC--------------HHHHHHHHHHHHhhhhh
Q 001139 86 HKLSSQIVTLEHEGN--------------WSKALEYYELQVRSDVM 117 (1143)
Q Consensus 86 ~~l~~~i~~yE~~g~--------------w~~Al~~Ye~~l~~~~~ 117 (1143)
........-|...|+ +.+|+.+|+..+..+|+
T Consensus 107 ~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~ 152 (172)
T PRK02603 107 SALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPN 152 (172)
T ss_pred HHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCch
No 201
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=20.06 E-value=1.8e+02 Score=35.18 Aligned_cols=61 Identities=15% Similarity=0.197 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCCchhHHHHHhhhhHHh-hhcCChHHHHHHh
Q 001139 403 LGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAE-SRSSNSRIILENY 464 (1143)
Q Consensus 403 ~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a~~~~llg~Wlae-sr~e~~~~I~~~Y 464 (1143)
.++...|..+|..|+.++||.+.+++++..+. ...-.+...|.+|+-| -+..+...++.+|
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~-~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPN-LDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc-cchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 45677899999999999999999999876542 2223355556666554 3444555566666
Done!