Query 001139
Match_columns 1143
No_of_seqs 319 out of 1478
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 12:59:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001139.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001139hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x6h_A GH13170P, VPS34, phosph 100.0 3.2E-62 1.1E-66 592.2 35.4 471 575-1142 76-693 (696)
2 3ls8_A Phosphatidylinositol 3- 100.0 2.7E-60 9.4E-65 566.0 33.4 422 575-1062 62-570 (614)
3 2y3a_A Phosphatidylinositol-4, 100.0 7.5E-58 2.6E-62 576.5 39.3 415 575-1060 592-1039(1092)
4 2wxf_A Phosphatidylinositol-4, 100.0 5E-58 1.7E-62 574.6 37.4 415 575-1060 439-887 (940)
5 1e7u_A Phosphatidylinositol 3- 100.0 3.4E-58 1.2E-62 576.0 33.3 414 575-1060 445-903 (961)
6 3hhm_A Phosphatidylinositol-4, 100.0 3E-56 1E-60 556.9 32.0 417 576-1060 586-1038(1091)
7 1w1n_A Phosphatidylinositol 3- 99.5 7.1E-15 2.4E-19 105.0 1.7 32 1112-1143 2-33 (33)
8 2y4t_A DNAJ homolog subfamily 97.2 0.2 7E-06 57.7 30.8 310 15-433 29-360 (450)
9 3ieg_A DNAJ homolog subfamily 97.1 0.24 8.2E-06 54.5 28.6 308 15-433 6-337 (359)
10 1w3b_A UDP-N-acetylglucosamine 96.6 0.22 7.5E-06 56.4 23.7 141 17-204 4-153 (388)
11 1w3b_A UDP-N-acetylglucosamine 96.4 0.53 1.8E-05 53.1 25.5 336 15-447 36-381 (388)
12 2xpi_A Anaphase-promoting comp 96.3 0.26 9E-06 59.2 23.1 65 360-432 516-580 (597)
13 2xpi_A Anaphase-promoting comp 95.9 1 3.6E-05 53.8 26.2 87 16-117 121-232 (597)
14 3hym_B Cell division cycle pro 95.8 0.69 2.4E-05 50.2 21.5 87 360-449 193-280 (330)
15 3hym_B Cell division cycle pro 94.7 4 0.00014 44.0 23.3 63 361-431 237-299 (330)
16 3fp2_A TPR repeat-containing p 94.1 10 0.00035 44.2 26.9 66 360-433 276-341 (537)
17 3ieg_A DNAJ homolog subfamily 94.0 2.2 7.5E-05 46.6 19.6 79 364-450 238-317 (359)
18 2gw1_A Mitochondrial precursor 93.9 4.6 0.00016 46.8 23.3 64 362-433 414-480 (514)
19 2y4t_A DNAJ homolog subfamily 93.6 2.8 9.6E-05 47.9 20.2 79 363-449 260-339 (450)
20 4gco_A Protein STI-1; structur 93.5 0.21 7.2E-06 47.2 8.6 87 17-117 18-113 (126)
21 2ho1_A Type 4 fimbrial biogene 91.9 1 3.6E-05 46.9 12.2 143 15-204 40-193 (252)
22 1fch_A Peroxisomal targeting s 91.8 3.6 0.00012 45.3 17.3 65 360-432 251-315 (368)
23 2q7f_A YRRB protein; TPR, prot 91.7 0.37 1.3E-05 49.9 8.3 149 9-204 20-177 (243)
24 4eqf_A PEX5-related protein; a 91.6 7 0.00024 43.2 19.5 66 359-432 246-311 (365)
25 3as5_A MAMA; tetratricopeptide 91.3 1.3 4.3E-05 43.1 11.5 114 15-172 11-133 (186)
26 3cv0_A Peroxisome targeting si 91.2 3.7 0.00013 44.2 16.2 66 360-433 206-271 (327)
27 2q7f_A YRRB protein; TPR, prot 90.7 2.1 7.3E-05 43.9 13.1 115 15-173 60-183 (243)
28 3vtx_A MAMA; tetratricopeptide 90.6 1.8 6.2E-05 42.7 11.9 114 15-172 8-130 (184)
29 4eqf_A PEX5-related protein; a 90.5 22 0.00074 39.0 22.1 89 15-117 68-165 (365)
30 4gyw_A UDP-N-acetylglucosamine 90.4 1.5 5.2E-05 54.7 13.3 115 15-173 12-135 (723)
31 2vyi_A SGTA protein; chaperone 90.2 1.4 4.7E-05 40.0 9.9 89 15-117 15-112 (131)
32 3vtx_A MAMA; tetratricopeptide 89.9 1.8 6.2E-05 42.8 11.3 115 15-173 42-165 (184)
33 2lni_A Stress-induced-phosphop 89.7 1.7 5.6E-05 39.9 10.1 90 14-117 18-116 (133)
34 3mkr_A Coatomer subunit epsilo 89.7 25 0.00086 37.9 24.0 85 17-114 4-94 (291)
35 4a1s_A PINS, partner of inscut 89.6 29 0.001 38.6 23.3 92 16-117 52-158 (411)
36 2vq2_A PILW, putative fimbrial 89.2 2 6.8E-05 43.4 11.2 116 15-172 11-136 (225)
37 3upv_A Heat shock protein STI1 88.8 2 7E-05 39.5 10.0 89 15-117 7-104 (126)
38 3cv0_A Peroxisome targeting si 88.7 27 0.00093 37.0 23.4 91 13-117 22-121 (327)
39 2pl2_A Hypothetical conserved 88.2 1.7 5.8E-05 44.9 9.8 112 15-170 8-139 (217)
40 3sz7_A HSC70 cochaperone (SGT) 88.1 2.1 7.2E-05 41.7 10.1 89 15-117 14-111 (164)
41 2fo7_A Synthetic consensus TPR 88.0 2.8 9.7E-05 37.9 10.4 115 15-173 4-127 (136)
42 3uq3_A Heat shock protein STI1 87.8 2.9 9.8E-05 43.2 11.5 86 15-115 8-109 (258)
43 2gw1_A Mitochondrial precursor 87.7 44 0.0015 38.2 26.5 87 15-116 9-104 (514)
44 1na0_A Designed protein CTPR3; 86.9 3.4 0.00012 36.9 10.1 89 15-117 12-109 (125)
45 3as5_A MAMA; tetratricopeptide 86.5 3.5 0.00012 39.8 10.7 115 15-173 45-168 (186)
46 4gyw_A UDP-N-acetylglucosamine 86.3 2 6.7E-05 53.6 10.5 115 15-173 46-169 (723)
47 3sf4_A G-protein-signaling mod 86.3 43 0.0015 36.7 25.2 93 15-117 12-119 (406)
48 3uq3_A Heat shock protein STI1 85.5 4 0.00014 42.1 11.1 194 15-252 41-235 (258)
49 1fch_A Peroxisomal targeting s 85.3 3.6 0.00012 45.4 11.2 124 16-172 221-353 (368)
50 3gyz_A Chaperone protein IPGC; 85.0 3 0.0001 40.7 9.1 54 90-173 75-128 (151)
51 3mkr_A Coatomer subunit epsilo 84.9 4.9 0.00017 43.7 11.8 149 16-207 69-221 (291)
52 3fp2_A TPR repeat-containing p 84.8 62 0.0021 37.3 27.3 80 359-449 309-388 (537)
53 2ho1_A Type 4 fimbrial biogene 84.7 6.3 0.00021 40.7 12.2 115 15-173 74-199 (252)
54 3ro2_A PINS homolog, G-protein 84.7 43 0.0015 35.3 24.3 92 16-117 9-115 (338)
55 1a17_A Serine/threonine protei 84.0 6.2 0.00021 37.5 11.0 89 15-117 16-113 (166)
56 2pl2_A Hypothetical conserved 83.9 4.2 0.00014 41.8 10.2 115 15-174 42-176 (217)
57 3u4t_A TPR repeat-containing p 83.8 5.5 0.00019 41.7 11.4 56 88-173 6-61 (272)
58 1xi4_A Clathrin heavy chain; a 83.2 83 0.0028 41.8 23.1 288 14-423 1051-1350(1630)
59 2vq2_A PILW, putative fimbrial 82.1 7.9 0.00027 38.8 11.3 115 15-173 45-171 (225)
60 4gcn_A Protein STI-1; structur 81.8 4.7 0.00016 37.6 8.8 89 15-117 11-115 (127)
61 4gco_A Protein STI-1; structur 81.7 2.5 8.4E-05 39.6 6.7 54 89-172 17-70 (126)
62 1hxi_A PEX5, peroxisome target 81.1 3.5 0.00012 38.1 7.5 90 14-117 19-117 (121)
63 3q49_B STIP1 homology and U bo 81.1 5.4 0.00018 36.8 8.9 90 14-117 11-109 (137)
64 3u4t_A TPR repeat-containing p 81.0 8.8 0.0003 40.0 11.6 115 15-173 6-132 (272)
65 3gyz_A Chaperone protein IPGC; 80.4 5.6 0.00019 38.8 9.0 82 61-172 10-93 (151)
66 2xcb_A PCRH, regulatory protei 79.7 9.5 0.00032 35.9 10.3 87 17-117 23-118 (142)
67 1elw_A TPR1-domain of HOP; HOP 79.1 8.1 0.00028 33.9 9.1 89 15-117 7-104 (118)
68 3qky_A Outer membrane assembly 79.1 63 0.0022 33.4 19.5 86 360-450 15-100 (261)
69 4ga2_A E3 SUMO-protein ligase 78.8 5.4 0.00018 38.4 8.3 91 13-117 32-132 (150)
70 2fbn_A 70 kDa peptidylprolyl i 77.7 9.3 0.00032 38.2 10.1 98 15-117 41-154 (198)
71 1elr_A TPR2A-domain of HOP; HO 77.6 8.7 0.0003 34.5 9.0 88 15-116 7-110 (131)
72 4abn_A Tetratricopeptide repea 77.5 3.6 0.00012 48.3 7.8 88 16-117 106-211 (474)
73 2vsy_A XCC0866; transferase, g 77.4 8.4 0.00029 46.0 11.2 112 15-170 26-149 (568)
74 1hh8_A P67PHOX, NCF-2, neutrop 77.4 32 0.0011 34.1 14.2 156 15-203 9-173 (213)
75 4i17_A Hypothetical protein; T 75.7 16 0.00054 37.2 11.4 90 15-117 10-108 (228)
76 3upv_A Heat shock protein STI1 75.3 5.4 0.00019 36.5 6.9 56 88-173 7-62 (126)
77 4gcn_A Protein STI-1; structur 72.8 5 0.00017 37.4 6.0 54 90-173 13-66 (127)
78 1p5q_A FKBP52, FK506-binding p 72.5 11 0.00039 41.7 9.9 118 16-168 151-283 (336)
79 4a1s_A PINS, partner of inscut 72.3 1.2E+02 0.0041 33.3 27.3 71 359-431 262-332 (411)
80 3urz_A Uncharacterized protein 72.3 11 0.00039 38.1 9.1 88 16-117 8-120 (208)
81 3sz7_A HSC70 cochaperone (SGT) 71.1 11 0.00036 36.4 8.2 82 62-173 13-103 (164)
82 3ma5_A Tetratricopeptide repea 70.6 6.9 0.00024 34.6 6.1 53 90-172 12-64 (100)
83 2h6f_A Protein farnesyltransfe 70.0 10 0.00036 43.0 9.0 114 16-173 101-224 (382)
84 3rkv_A Putative peptidylprolyl 69.8 14 0.00047 35.5 8.7 103 15-117 14-129 (162)
85 2l6j_A TPR repeat-containing p 69.7 6.8 0.00023 34.4 5.9 55 90-174 9-63 (111)
86 3q49_B STIP1 homology and U bo 69.5 8.4 0.00029 35.4 6.8 55 89-173 13-67 (137)
87 3qou_A Protein YBBN; thioredox 69.0 23 0.0008 37.9 11.2 116 15-174 120-244 (287)
88 1ihg_A Cyclophilin 40; ppiase 68.9 16 0.00055 41.2 10.2 103 15-117 226-339 (370)
89 2vsy_A XCC0866; transferase, g 68.8 12 0.00041 44.7 9.6 83 60-172 23-114 (568)
90 2pzi_A Probable serine/threoni 67.3 10 0.00036 46.6 8.8 143 21-204 400-552 (681)
91 2fo7_A Synthetic consensus TPR 67.1 20 0.00069 31.8 8.8 89 15-117 38-135 (136)
92 2vyi_A SGTA protein; chaperone 67.1 24 0.00082 31.3 9.3 79 65-173 17-104 (131)
93 2vgx_A Chaperone SYCD; alterna 66.7 20 0.0007 34.1 9.1 69 357-433 18-86 (148)
94 2vgx_A Chaperone SYCD; alterna 66.1 40 0.0014 31.9 11.1 67 360-434 55-121 (148)
95 2lni_A Stress-induced-phosphop 65.8 20 0.00069 32.1 8.6 83 61-173 17-108 (133)
96 2e2e_A Formate-dependent nitri 65.8 19 0.00066 34.8 8.9 89 15-117 47-147 (177)
97 1a17_A Serine/threonine protei 65.7 8.3 0.00028 36.6 6.0 56 88-173 16-71 (166)
98 2dba_A Smooth muscle cell asso 65.1 18 0.00062 33.3 8.2 92 15-117 31-131 (148)
99 4ga2_A E3 SUMO-protein ligase 64.8 14 0.00046 35.4 7.4 54 90-173 36-89 (150)
100 1xnf_A Lipoprotein NLPI; TPR, 64.7 12 0.0004 39.0 7.5 111 23-173 16-135 (275)
101 1xnf_A Lipoprotein NLPI; TPR, 64.6 31 0.0011 35.6 10.8 89 15-117 46-143 (275)
102 2kck_A TPR repeat; tetratricop 64.3 15 0.00052 31.7 7.1 55 89-173 10-64 (112)
103 2kc7_A BFR218_protein; tetratr 64.2 11 0.00036 32.7 6.0 54 90-173 5-59 (99)
104 3k9i_A BH0479 protein; putativ 64.0 10 0.00034 34.3 6.0 55 89-173 31-85 (117)
105 1xi4_A Clathrin heavy chain; a 63.7 18 0.00063 47.7 10.0 105 15-172 1137-1244(1630)
106 2xev_A YBGF; tetratricopeptide 63.7 62 0.0021 28.8 11.6 83 363-450 5-87 (129)
107 2xev_A YBGF; tetratricopeptide 63.3 44 0.0015 29.8 10.5 70 361-435 40-109 (129)
108 2r5s_A Uncharacterized protein 63.3 64 0.0022 31.2 12.3 116 15-174 9-133 (176)
109 1kt0_A FKBP51, 51 kDa FK506-bi 62.9 28 0.00097 40.3 11.0 119 15-168 271-404 (457)
110 2c2l_A CHIP, carboxy terminus 62.7 19 0.00066 38.5 8.9 89 15-117 7-104 (281)
111 2pzi_A Probable serine/threoni 62.6 18 0.00063 44.4 9.8 114 15-173 436-558 (681)
112 4abn_A Tetratricopeptide repea 62.5 15 0.00051 42.9 8.5 113 15-172 140-281 (474)
113 3nf1_A KLC 1, kinesin light ch 62.4 26 0.00088 36.9 9.9 131 15-173 72-219 (311)
114 3edt_B KLC 2, kinesin light ch 62.2 27 0.00094 35.9 9.9 131 15-173 46-193 (283)
115 3ro2_A PINS homolog, G-protein 61.6 1.6E+02 0.0054 30.7 25.5 71 359-431 222-292 (338)
116 1elw_A TPR1-domain of HOP; HOP 61.5 37 0.0013 29.3 9.3 78 360-448 4-81 (118)
117 2xcb_A PCRH, regulatory protei 61.5 58 0.002 30.2 11.2 66 360-433 52-117 (142)
118 3rkv_A Putative peptidylprolyl 60.7 15 0.00052 35.1 7.0 71 88-173 14-87 (162)
119 1qqe_A Vesicular transport pro 60.3 36 0.0012 36.4 10.6 95 15-117 40-150 (292)
120 4g1t_A Interferon-induced prot 59.9 2.2E+02 0.0076 31.9 20.1 29 89-117 55-83 (472)
121 1na3_A Designed protein CTPR2; 59.6 15 0.00051 30.7 6.0 54 90-173 14-67 (91)
122 2l6j_A TPR repeat-containing p 59.1 71 0.0024 27.4 10.8 67 360-434 4-70 (111)
123 3ma5_A Tetratricopeptide repea 58.9 43 0.0015 29.2 9.1 63 360-430 7-69 (100)
124 1hxi_A PEX5, peroxisome target 57.8 50 0.0017 30.0 9.7 63 363-433 20-82 (121)
125 3ro3_A PINS homolog, G-protein 57.8 51 0.0017 30.2 10.1 69 16-117 13-81 (164)
126 3sf4_A G-protein-signaling mod 57.5 2.1E+02 0.0073 30.9 31.5 109 359-472 226-337 (406)
127 1b89_A Protein (clathrin heavy 57.4 6.2 0.00021 45.8 3.8 103 14-169 63-168 (449)
128 3k9i_A BH0479 protein; putativ 57.4 66 0.0023 28.6 10.4 67 359-433 26-92 (117)
129 2kat_A Uncharacterized protein 57.3 16 0.00055 32.6 6.1 53 90-172 24-76 (115)
130 2v5f_A Prolyl 4-hydroxylase su 56.5 8.8 0.0003 34.5 4.0 73 13-117 6-78 (104)
131 3nf1_A KLC 1, kinesin light ch 56.4 36 0.0012 35.7 9.7 109 360-471 69-182 (311)
132 1na3_A Designed protein CTPR2; 55.5 71 0.0024 26.2 9.7 65 360-432 9-73 (91)
133 3ro3_A PINS homolog, G-protein 55.2 71 0.0024 29.1 10.6 29 89-117 93-121 (164)
134 2if4_A ATFKBP42; FKBP-like, al 55.2 14 0.00048 41.0 6.2 56 88-173 233-288 (338)
135 1hh8_A P67PHOX, NCF-2, neutrop 54.8 35 0.0012 33.8 8.8 89 15-117 40-153 (213)
136 1na0_A Designed protein CTPR3; 54.5 64 0.0022 28.0 9.7 65 360-432 9-73 (125)
137 1elr_A TPR2A-domain of HOP; HO 54.1 64 0.0022 28.3 9.8 65 360-432 4-68 (131)
138 2kat_A Uncharacterized protein 54.0 71 0.0024 28.1 10.0 64 360-431 19-82 (115)
139 3edt_B KLC 2, kinesin light ch 53.4 71 0.0024 32.6 11.2 110 359-471 42-156 (283)
140 1wao_1 Serine/threonine protei 53.2 9.7 0.00033 44.7 4.7 86 18-117 12-106 (477)
141 3ulq_A Response regulator aspa 53.2 38 0.0013 37.6 9.6 94 16-116 147-255 (383)
142 3qou_A Protein YBBN; thioredox 53.2 1.4E+02 0.0048 31.6 13.9 64 361-432 118-181 (287)
143 2hr2_A Hypothetical protein; a 53.0 19 0.00066 35.5 6.0 99 16-171 15-124 (159)
144 4i17_A Hypothetical protein; T 52.6 1.9E+02 0.0064 28.8 19.0 99 362-471 44-146 (228)
145 2h6f_A Protein farnesyltransfe 52.0 25 0.00085 39.9 7.7 87 17-117 136-232 (382)
146 2yhc_A BAMD, UPF0169 lipoprote 51.9 76 0.0026 32.1 11.0 83 362-449 6-88 (225)
147 1qqe_A Vesicular transport pro 51.0 42 0.0014 35.8 9.2 51 62-117 59-109 (292)
148 2c2l_A CHIP, carboxy terminus 51.0 25 0.00085 37.6 7.2 55 89-173 8-62 (281)
149 2ifu_A Gamma-SNAP; membrane fu 50.5 50 0.0017 35.5 9.7 94 15-117 39-147 (307)
150 2dba_A Smooth muscle cell asso 48.2 78 0.0027 28.7 9.5 66 360-433 65-130 (148)
151 2ifu_A Gamma-SNAP; membrane fu 47.2 2.1E+02 0.0071 30.4 14.2 105 362-472 38-145 (307)
152 3nsz_A CK II alpha, casein kin 47.0 26 0.00088 38.2 6.7 50 966-1015 153-204 (330)
153 2hr2_A Hypothetical protein; a 46.4 32 0.0011 33.9 6.5 67 88-172 14-80 (159)
154 3q15_A PSP28, response regulat 45.6 81 0.0028 34.8 10.7 26 89-114 226-251 (378)
155 2r5s_A Uncharacterized protein 44.2 21 0.00072 34.8 4.9 61 363-429 111-171 (176)
156 4g26_A Pentatricopeptide repea 44.0 71 0.0024 37.5 10.2 87 60-175 105-201 (501)
157 3gw4_A Uncharacterized protein 43.8 1.1E+02 0.0039 29.4 10.5 55 62-116 28-97 (203)
158 2yhc_A BAMD, UPF0169 lipoprote 43.2 72 0.0025 32.3 9.1 92 15-117 7-128 (225)
159 3n71_A Histone lysine methyltr 42.1 62 0.0021 38.0 9.2 73 356-429 347-420 (490)
160 2e2e_A Formate-dependent nitri 41.1 1.5E+02 0.005 28.2 10.6 66 362-435 80-148 (177)
161 2qfc_A PLCR protein; TPR, HTH, 41.0 1E+02 0.0035 32.6 10.2 92 18-117 121-228 (293)
162 1zar_A RIO2 kinase; serine kin 40.5 11 0.00037 40.9 2.1 26 966-993 216-241 (282)
163 1zth_A RIO1 serine protein kin 40.1 12 0.00043 39.7 2.6 48 967-1022 195-245 (258)
164 3qww_A SET and MYND domain-con 38.3 45 0.0015 38.5 7.1 92 19-116 305-413 (433)
165 2kck_A TPR repeat; tetratricop 36.7 1.1E+02 0.0038 25.8 8.1 67 361-433 41-108 (112)
166 3qwp_A SET and MYND domain-con 36.6 63 0.0022 37.1 8.0 73 356-429 325-398 (429)
167 3qww_A SET and MYND domain-con 36.1 62 0.0021 37.3 7.8 73 356-429 336-409 (433)
168 2of3_A ZYG-9; multifunctional 35.7 65 0.0022 34.5 7.2 77 594-676 86-173 (266)
169 4e7w_A Glycogen synthase kinas 35.1 48 0.0016 37.4 6.6 27 966-992 164-190 (394)
170 3gw4_A Uncharacterized protein 35.0 2E+02 0.0068 27.6 10.6 95 15-117 29-139 (203)
171 3e3p_A Protein kinase, putativ 34.9 51 0.0018 36.2 6.7 28 966-993 154-181 (360)
172 4g26_A Pentatricopeptide repea 34.7 80 0.0027 37.1 8.6 86 15-113 108-203 (501)
173 3urz_A Uncharacterized protein 34.4 2.5E+02 0.0087 27.7 11.5 74 365-449 59-132 (208)
174 3qky_A Outer membrane assembly 34.3 3.8E+02 0.013 27.1 18.3 74 360-438 52-133 (261)
175 2kc7_A BFR218_protein; tetratr 33.4 1.4E+02 0.0049 25.0 8.2 61 365-433 5-66 (99)
176 3eb0_A Putative uncharacterize 33.4 58 0.002 36.4 6.9 27 966-992 164-190 (383)
177 1p5q_A FKBP52, FK506-binding p 31.7 1.9E+02 0.0064 31.5 10.7 66 360-433 196-261 (336)
178 1nd4_A Aminoglycoside 3'-phosp 31.4 21 0.0007 37.3 2.5 26 964-991 186-212 (264)
179 3mv2_B Coatomer subunit epsilo 31.2 1.8E+02 0.0061 31.8 10.1 117 15-174 103-236 (310)
180 2y7j_A Phosphorylase B kinase 30.9 19 0.00064 40.4 2.1 26 966-992 223-248 (365)
181 3byv_A Rhoptry kinase; malaria 30.4 27 0.00091 39.2 3.4 49 966-1016 229-277 (377)
182 1ua2_A CAK, cell division prot 29.7 1.1E+02 0.0036 33.6 8.2 28 965-993 134-161 (346)
183 1ouv_A Conserved hypothetical 29.3 2.7E+02 0.0092 28.5 11.1 83 16-114 10-107 (273)
184 1ouv_A Conserved hypothetical 27.3 3E+02 0.01 28.1 11.0 14 237-250 235-248 (273)
185 4a5x_A MITD1, MIT domain-conta 27.3 52 0.0018 28.8 3.9 27 88-114 19-45 (86)
186 3fe3_A MAP/microtubule affinit 27.1 61 0.0021 35.6 5.5 26 966-992 137-162 (328)
187 2iwi_A Serine/threonine-protei 26.9 75 0.0026 34.1 6.2 29 965-993 161-189 (312)
188 3u3w_A Transcriptional activat 26.9 1.8E+02 0.006 30.6 9.2 95 15-117 118-228 (293)
189 3mkq_A Coatomer beta'-subunit; 26.8 1.9E+02 0.0066 35.3 10.7 47 64-110 698-748 (814)
190 3a99_A Proto-oncogene serine/t 26.1 78 0.0027 34.3 6.2 29 965-993 171-199 (320)
191 2clq_A Mitogen-activated prote 25.9 28 0.00097 37.0 2.4 29 965-993 144-172 (295)
192 4f9c_A Cell division cycle 7-r 25.7 29 0.00098 39.1 2.5 25 967-991 141-165 (361)
193 1t4h_A Serine/threonine-protei 25.5 29 0.001 36.9 2.5 28 966-993 154-181 (290)
194 1cm8_A Phosphorylated MAP kina 25.4 78 0.0027 35.2 6.1 29 966-995 151-179 (367)
195 1j1b_A Glycogen synthase kinas 25.4 92 0.0032 35.4 6.8 28 966-993 179-206 (420)
196 3tm0_A Aminoglycoside 3'-phosp 25.3 33 0.0011 36.0 2.7 28 962-991 183-211 (263)
197 3qd2_B Eukaryotic translation 25.2 27 0.00094 37.8 2.2 27 966-993 187-213 (332)
198 3coi_A Mitogen-activated prote 25.1 66 0.0023 35.3 5.4 29 965-994 148-176 (353)
199 3sg8_A APH(2'')-ID; antibiotic 24.6 33 0.0011 37.1 2.7 30 963-992 192-222 (304)
200 3fdn_A Serine/threonine-protei 24.6 51 0.0018 34.7 4.2 27 966-993 132-158 (279)
201 4e5w_A Tyrosine-protein kinase 24.6 1.1E+02 0.0037 32.4 6.9 27 966-993 149-175 (302)
202 3niz_A Rhodanese family protei 24.3 1.4E+02 0.0049 32.0 7.8 27 966-993 142-168 (311)
203 2fbn_A 70 kDa peptidylprolyl i 23.9 3.7E+02 0.013 25.9 10.4 65 361-433 89-153 (198)
204 2i6l_A Mitogen-activated prote 23.8 34 0.0012 36.8 2.6 29 965-993 142-170 (320)
205 2psq_A Fibroblast growth facto 23.8 43 0.0015 37.5 3.5 27 966-993 226-252 (370)
206 4exu_A Mitogen-activated prote 23.6 76 0.0026 35.3 5.5 28 966-994 167-194 (371)
207 1kt0_A FKBP51, 51 kDa FK506-bi 23.6 2.7E+02 0.0093 31.8 10.5 66 360-433 317-382 (457)
208 3h4j_B AMPK kdaid, SNF1-like p 23.0 69 0.0024 35.3 5.0 27 965-992 130-156 (336)
209 3pls_A Macrophage-stimulating 22.9 1.3E+02 0.0046 31.5 7.2 26 966-992 147-172 (298)
210 3txo_A PKC-L, NPKC-ETA, protei 22.9 32 0.0011 38.4 2.1 27 966-993 147-173 (353)
211 2pyw_A Uncharacterized protein 22.8 31 0.0011 39.5 2.1 30 962-993 232-261 (420)
212 3hyh_A Carbon catabolite-derep 22.8 35 0.0012 36.8 2.3 24 967-991 136-159 (275)
213 1byg_A CSK, protein (C-termina 22.8 46 0.0016 35.1 3.3 29 965-994 139-167 (278)
214 4dc2_A Protein kinase C IOTA t 22.6 58 0.002 37.0 4.3 26 966-992 176-201 (396)
215 3kex_A Receptor tyrosine-prote 22.4 37 0.0013 37.0 2.5 27 966-993 138-164 (325)
216 2fst_X Mitogen-activated prote 22.4 81 0.0028 35.1 5.5 28 966-994 155-182 (367)
217 4eqm_A Protein kinase; transfe 22.3 33 0.0011 36.9 2.0 27 966-993 134-160 (294)
218 2i0e_A Protein kinase C-beta I 22.3 33 0.0011 38.3 2.1 27 966-993 144-170 (353)
219 3og7_A AKAP9-BRAF fusion prote 22.2 38 0.0013 36.1 2.5 27 966-993 143-169 (289)
220 3fxz_A Serine/threonine-protei 22.0 34 0.0012 36.8 2.1 27 966-993 139-165 (297)
221 1mp8_A Focal adhesion kinase 1 21.9 37 0.0013 36.0 2.3 27 966-993 139-165 (281)
222 1wao_1 Serine/threonine protei 21.6 3.7E+02 0.013 30.9 11.1 66 360-433 40-105 (477)
223 2v5f_A Prolyl 4-hydroxylase su 21.5 1.8E+02 0.0063 25.4 6.7 61 90-173 10-70 (104)
224 3pg1_A Mitogen-activated prote 21.4 79 0.0027 34.7 5.1 27 966-993 157-183 (362)
225 3o0g_A Cell division protein k 21.3 36 0.0012 36.3 2.1 27 966-993 124-150 (292)
226 2c30_A Serine/threonine-protei 21.2 36 0.0012 37.1 2.1 27 966-993 164-190 (321)
227 3dtc_A Mitogen-activated prote 21.1 91 0.0031 32.4 5.3 28 966-993 131-165 (271)
228 1rjb_A FL cytokine receptor; k 21.1 44 0.0015 36.5 2.8 28 965-993 194-221 (344)
229 3gen_A Tyrosine-protein kinase 21.0 39 0.0014 35.7 2.3 28 965-993 142-169 (283)
230 3tt0_A Basic fibroblast growth 21.0 54 0.0018 36.7 3.6 27 966-993 214-240 (382)
231 2zv2_A Calcium/calmodulin-depe 20.8 38 0.0013 36.3 2.1 27 966-993 160-186 (298)
232 3g33_A Cell division protein k 20.6 41 0.0014 36.2 2.4 28 965-993 142-169 (308)
233 1fot_A TPK1 delta, CAMP-depend 20.6 87 0.003 34.1 5.1 27 966-993 129-155 (318)
234 3fpq_A Serine/threonine-protei 20.5 42 0.0015 36.4 2.4 25 967-991 155-179 (290)
235 3a8x_A Protein kinase C IOTA t 20.5 41 0.0014 37.3 2.3 27 966-993 133-159 (345)
236 2rpa_A Katanin P60 ATPase-cont 20.4 67 0.0023 27.6 3.1 25 90-114 17-41 (78)
237 3f66_A Hepatocyte growth facto 20.3 43 0.0015 35.7 2.4 28 965-993 150-177 (298)
238 4aaa_A Cyclin-dependent kinase 20.3 1E+02 0.0035 33.4 5.6 27 965-992 146-172 (331)
239 4hcu_A Tyrosine-protein kinase 20.3 37 0.0012 35.7 1.8 27 965-992 128-154 (269)
240 3q60_A ROP5B; pseudokinase, tr 20.2 40 0.0014 37.6 2.2 29 966-995 217-245 (371)
241 3sxs_A Cytoplasmic tyrosine-pr 20.2 38 0.0013 35.5 2.0 27 966-993 127-153 (268)
242 1xjd_A Protein kinase C, theta 20.1 39 0.0013 37.5 2.1 26 966-992 141-166 (345)
243 1t46_A HOMO sapiens V-KIT hard 20.0 56 0.0019 35.0 3.3 28 965-993 167-194 (313)
No 1
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=100.00 E-value=3.2e-62 Score=592.22 Aligned_cols=471 Identities=19% Similarity=0.328 Sum_probs=348.3
Q ss_pred HHHHHHHHHHhccCCCcchhhHHHHHhhhccCC------------CcHHHHHHHHHhhcccCccchhHchHHHHhhhCCC
Q 001139 575 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 642 (1143)
Q Consensus 575 ~~Al~~Yl~sL~~~~~~~~~~~~RllsLWf~~~------------~~~~v~~~l~~~~~~ip~~k~l~~ipQL~srL~~~ 642 (1143)
..||..|++|+.|.+......+..+|.-|-..+ .++.|.....+.+...+...++..+|||+.-|.++
T Consensus 76 ~~aL~kfL~sv~W~~~~e~~~a~~lL~~W~~~~~~dALeLL~~~f~~~~VR~yAV~~L~~~~de~L~~YLlQLVQALKyE 155 (696)
T 2x6h_A 76 KKALTKFLKCINWKLEDEVTQALWMLANWAPMDVEDALELLSPTFTHPQVRKYAVSRLAQAPDEDLLLYLLQLVQALKYE 155 (696)
T ss_dssp HHHHHHHGGGTTTSCHHHHHHHHHHHHHSCCCCHHHHHHHHSTTCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGS
T ss_pred hhHHHHHHhhCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhc
Confidence 579999999999999877777899999998765 34568888999999999999999999999999877
Q ss_pred cccc---------------------------------------c------------------------------------
Q 001139 643 KDAL---------------------------------------G------------------------------------ 647 (1143)
Q Consensus 643 ~~~~---------------------------------------~------------------------------------ 647 (1143)
.... +
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (696)
T 2x6h_A 156 DPRHIVHLHGCIFPERDVVRSILDDNGSLLDQSSLSDLSATSSGLHASVIPANQRAASVLAAIKSDKSVSPGSAGGSGSG 235 (696)
T ss_dssp CHHHHHHHHHHHC-------------------------------------------------------------------
T ss_pred chhhhcccccccccchhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2000 0
Q ss_pred -------c--c----------------------------cHHHHHHHHHHHHHHhCCh---hhHHHHHhcccccchhhhh
Q 001139 648 -------L--H----------------------------NFQFALVSLVKKMAIDHPY---HTIFQLLALANGDRIKDKQ 687 (1143)
Q Consensus 648 -------~--~----------------------------~f~~~L~~ll~~i~~~hP~---~~l~~l~~~~~~~~~~~~~ 687 (1143)
+ . ...+.|..+|++.|...|. +.+|.|.+....+.... .
T Consensus 236 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~La~FLl~rA~~n~~i~h~l~W~L~~e~~~~~~~~-~ 314 (696)
T 2x6h_A 236 GQGSVALPNPSAPATPGSSSLPCDSNSNALMLAEGISFGSVPANLCTFLIQRACTNATLANYFYWYLSIEVEEVESVR-K 314 (696)
T ss_dssp -------------------------------------------CHHHHHHHHHTTCHHHHHHHHHHHHHHHCC------C
T ss_pred cccccccccccccccccccccccccccccccccccccccccCCHHHHHHHHHHhhChhhHHHHHHHhHhhccCccccc-c
Confidence 0 0 0145688999999998774 78888888765411100 0
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHhhhhhc-ccccccccc-cchhhhhhc--cc
Q 001139 688 RSRNSFVVDMDKKLAAENLLEELSS------YHGAIIRQMKQMVDVYIKLAELETR-REDTNKRIQ-LPREIRCLR--QL 757 (1143)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~il~~l~~------~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~~~~-~~~~~~~l~--~l 757 (1143)
+...... .-....+.++..+.. .....+.....+++.+.+++..... +....+++. +...+.... ..
T Consensus 315 --~~~~~~~-~~~~il~~~l~~l~~g~~~~~~~~~~l~~Q~~~~~~L~~i~~~ik~~~~~~~~k~e~L~~~L~~~~~~~~ 391 (696)
T 2x6h_A 315 --QDERAHD-MYAMVLKMFLKVLENGNFNLRGIFYNLRKQRRFIDELVKLVKLVAKEPGNRNKKTEKFQKLLAEQDMFKV 391 (696)
T ss_dssp --CHHHHHH-HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHSTTSSSS
T ss_pred --ccchHHH-HHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcchhhccc
Confidence 0000000 001112234444433 1223445556677777777754321 111111111 111111110 00
Q ss_pred ccccccccccCCCCCCCcCCCCcCccccccc-eEEEecCCCCceEEEEEcCC-CCeeeEEeecCCcchhhhHHHHHHHHH
Q 001139 758 ELVPVVTATVPIDCTCQYNEGSFPYFKGLAE-SVMVMNGINAPKVVECFGSD-GHKYRQLAKSGNDDLRQDAVMEQFFGL 835 (1143)
Q Consensus 758 ~~~p~~t~~lp~~~~~~~~~~~~~~i~~~~~-~~~v~~s~~~Pk~i~~~gsd-G~~y~~l~K~g~ddlR~D~r~~Ql~~~ 835 (1143)
++..+.+..+|.+| .+.|.+|.+ .+.|++|+++|++|+|+|+| |+.|.||+|.| ||+|||+|+||+|++
T Consensus 392 ~l~~~~~~~lP~~p--------~v~I~~~~~~~~~V~~S~~~P~~l~~~gsD~G~~y~~i~K~g-DDLRQD~rv~Ql~~l 462 (696)
T 2x6h_A 392 NFTNFEPIPFPLDP--------EIYITKIVPMRTSLFKSALMPAKLTFVTSIAHHEYAAIFKHG-DDLRQDQLILQMITL 462 (696)
T ss_dssp CTTSCCCEECSSCT--------TSEEEEECGGGCEECSSSSCCEEEEEEETTTTCEEEEEEECS-SCTHHHHHHHHHHHH
T ss_pred ccccCCCccCCCCC--------CeEEEEEecCeEEEcccccCCeEEEEEecCCCCceeEEEecC-cccchhHHHHHHHHH
Confidence 11111224455544 257888885 68999999999999999999 99999999965 999999999999999
Q ss_pred HHHHHhcCccccccceeeeeceEEEcCCCCceeEecCCCcchHHHhhhhccCCCCCCCCCCCcchhHHHHhhccchHhHH
Q 001139 836 VNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKR 915 (1143)
Q Consensus 836 ~N~ll~~~~et~~r~L~i~~y~Vipls~~~gliE~v~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 915 (1143)
||.+|++++ ++|.+++|.|||+++++||||||+ +.|+++|+... +
T Consensus 463 mn~il~~~~----~~L~i~~Y~Vipls~~~GLIE~V~-s~tl~~i~~~~----------~-------------------- 507 (696)
T 2x6h_A 463 MDKLLRREN----LDLKLTPYKVLATSSKHGFLQYVD-SCTVAEVLARE----------G-------------------- 507 (696)
T ss_dssp HHHHHHHTT----CCCCCCCCCEEESSTTCEEEECCC-CEEHHHHHHHS----------S--------------------
T ss_pred HHHHHHhCC----CCcEEeccEEEeccCCCCeeeeCC-CccHHHHHHhc----------C--------------------
Confidence 999999985 899999999999999999999997 57999987531 0
Q ss_pred HHHHHHHHhhhhhHHHHHHHhcCCchHHH----HHHHHHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchh
Q 001139 916 IAFQEVCENFRPVLHYFFLERFLQPAYWF----EKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVA 991 (1143)
Q Consensus 916 ~~f~~i~~~~~pvl~~~~~~~~~~~~~w~----~~r~~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~ 991 (1143)
-+++||.+.||++..|| .+|++|++|+|+|||+|||||||||||+||||| .||++||||||++
T Consensus 508 ------------~l~~~f~~~~p~~~~~~~~~~~ar~nF~~SlA~~Svv~YILGlGDRH~~NILid-~tG~v~HIDFG~~ 574 (696)
T 2x6h_A 508 ------------NIHNFFRKHHPCDNGPYGISAEVMDTYIKSCAGYCVITYLLGVGDRHLDNLLLT-TNGKLFHIDFGYI 574 (696)
T ss_dssp ------------SHHHHHHHHSBCTTSSSSBCHHHHHHHHHHHHHHHHHHHHHTCCCCCTTTEEEC-TTSCEEECCCCSC
T ss_pred ------------hHHHHHHHHCCCccchhhhHHHHHHHHHHHHHHHHHHHHHccCCCCCCcceEEe-CCCCEEEEeehhh
Confidence 15678999999998887 799999999999999999999999999999999 5999999999999
Q ss_pred hccccCCCCCCCCCccccHHHHhhhcccccccc--hHHHHHHHHHHHhhChHHHHHHHHHHccCCccccccChhHHHhhh
Q 001139 992 FEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGV--FRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQ 1069 (1143)
Q Consensus 992 f~~~~~l~~pE~VPFRLT~~i~~~~g~~g~eG~--F~~~~~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~w~~~~~~~~~~~ 1069 (1143)
|+++ +.||+|||||||||+++||+.|++|. |+.+|+.++++||+|++.|+++|++|++||+.+|...+.
T Consensus 575 f~~~---p~pe~VPFRLT~~mv~~mG~~g~eg~~~Fr~~c~~~~~~LR~~~~~il~ll~lml~~~lp~~~~~~~------ 645 (696)
T 2x6h_A 575 LGRD---PKPMPPPMKLSKEMVEAMGGISSEHHHEFRKQCYTAYLHLRRHANVMLNLFSLMVDATVPDIALEPD------ 645 (696)
T ss_dssp TTCC---SSSCCCSSCCCHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTTCCCTTTTSSGG------
T ss_pred hccC---CCCcCCCeecCHHHHHHhCCCCcccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHcCCCCccccCHH------
Confidence 9988 47999999999999999999999985 999999999999999999999999999999999974332
Q ss_pred hhcccccccCCCCCccccccchhHHHHHHHHhhccCCCCCCCccCHHHHHHHHHHHccChh--hhHhhCcccccC
Q 001139 1070 KEMDDDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDPE--RFCLMFPGWGAW 1142 (1143)
Q Consensus 1070 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~kl~g~~~~~~~sv~~~V~~LI~~Atd~~--nL~~m~~gW~pw 1142 (1143)
.++..+++|+...... -....+|..||++|.+.- ++.-+++.|..|
T Consensus 646 -------------------------~~i~~l~~rf~l~lse--eea~~~~~~lI~~S~~s~~t~~~d~~h~~aq~ 693 (696)
T 2x6h_A 646 -------------------------KAVKKVEENLQLGLTD--EEAVQHLQSLLDVSITAVMPALVEQIHRFTQY 693 (696)
T ss_dssp -------------------------GHHHHHHHHHTTTSCH--HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHhCCCCCH--HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1356677777652111 124568899999998754 455555555543
No 2
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=100.00 E-value=2.7e-60 Score=565.96 Aligned_cols=422 Identities=21% Similarity=0.350 Sum_probs=315.3
Q ss_pred HHHHHHHHHHhccCCCcchhhHHHHHhhhccCC------------CcHHHHHHHHHhhcccCccchhHchHHHHhhhCCC
Q 001139 575 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 642 (1143)
Q Consensus 575 ~~Al~~Yl~sL~~~~~~~~~~~~RllsLWf~~~------------~~~~v~~~l~~~~~~ip~~k~l~~ipQL~srL~~~ 642 (1143)
..|+..|++|+.|++......+..+|.-|-..+ .++.|.....+.+...+...++..++||+.-|..+
T Consensus 62 ~~aL~kfL~sV~W~~~~e~~~a~~LL~~W~~i~~~dALELL~~~f~d~~VR~yAV~~L~~~~D~eL~lYLlQLVQALKyE 141 (614)
T 3ls8_A 62 EKALTKFLKCVNWDLPQEAKQALELLGKWKPMDVEDSLELLSSHYTNPTVRRYAVARLRQADDEDLLMYLLQLVQALKYE 141 (614)
T ss_dssp GGGHHHHHTTCCTTSHHHHHHHHHHHHHSCCCCHHHHGGGGSTTCCCHHHHHHHHHHHTTSCHHHHHHTHHHHHHHGGGS
T ss_pred hhHHHHHhccCCCCCHHHHHHHHHHHhhCCCCCHHHHHHhCcccCCCHHHHHHHHHHHHhCChHHHHHHHHHHHHhhhcc
Confidence 369999999999999877777889999998775 34568889999999999999999999999999876
Q ss_pred cccc-------------cc-------------------------------c------------cHHHHHHHHHHHHHHhC
Q 001139 643 KDAL-------------GL-------------------------------H------------NFQFALVSLVKKMAIDH 666 (1143)
Q Consensus 643 ~~~~-------------~~-------------------------------~------------~f~~~L~~ll~~i~~~h 666 (1143)
+... +. + ...+.|..+|++.|...
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~La~FLi~RAl~n 221 (614)
T 3ls8_A 142 NFDDIKNGLEPTKKDSQSSVSENVSNSGINSAEIDSSQIITSPLPSVSSPPPASKTKEVPDGENLEQDLCTFLISRACKN 221 (614)
T ss_dssp CHHHHHHTC------------------------CCGGGSTTCCCCC-------------------CCCHHHHHHHHHHTC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCChHHHHHHHHHhcC
Confidence 4211 00 0 00135899999999988
Q ss_pred Ch---hhHHHHHhcccccchhhhhccccchhhhhhHHHHHHHHHHHHHhhH------HHHHHHHHHHHHHHHHHhhhhhc
Q 001139 667 PY---HTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSSYH------GAIIRQMKQMVDVYIKLAELETR 737 (1143)
Q Consensus 667 P~---~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~------~~~~~~~~~~~~~~~~la~~~~~ 737 (1143)
|. ..+|.|.+........ .+. ......- ....+.++..+.... ...+..-..+++.+.++++....
T Consensus 222 ~~ig~~lyW~L~~E~~~~~~~--~~~--~~~~~~Y-~~vl~~~l~~l~~g~~~~~~~r~~L~~Q~~~~~~L~~l~~~v~~ 296 (614)
T 3ls8_A 222 STLANYLYWYVIVECEDQDTQ--QRD--PKTHEMY-LNVMRRFSQALLKGDKSVRVMRSLLAAQQTFVDRLVHLMKAVQR 296 (614)
T ss_dssp HHHHHHHHHHHHHHHHCHHHH--HHC--HHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhheeeeccCcccc--ccc--hHHHHHH-HHHHHHHHHHHHccCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 87 4567777654321100 000 0000000 001122333222211 12233334566777777654321
Q ss_pred ccccc--cccc-cchhhhhhcccccccccccccCCCCCCCcCCCCcCccccccc-eEEEecCCCCceEEEEEcCCCCeee
Q 001139 738 REDTN--KRIQ-LPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAE-SVMVMNGINAPKVVECFGSDGHKYR 813 (1143)
Q Consensus 738 ~~~~~--~~~~-~~~~~~~l~~l~~~p~~t~~lp~~~~~~~~~~~~~~i~~~~~-~~~v~~s~~~Pk~i~~~gsdG~~y~ 813 (1143)
+..+ ++.. +...+.......+....+..+|.+| .+.|.+|.+ .+.|++|+++|++|+|+|+||+.|.
T Consensus 297 -~~~~~~kk~e~L~~~L~~~~~~~l~~~~~~~lPl~P--------~v~I~~i~p~~~~V~~Sk~~P~~l~~~gsDG~~y~ 367 (614)
T 3ls8_A 297 -ESGNRKKKNERLQALLGDNEKMNLSDVELIPLPLEP--------QVKIRGIIPETATLFKSALMPAQLFFKTEDGGKYP 367 (614)
T ss_dssp -SCSCHHHHHHHHHHHHHCHHHHCCSSCSSEEETTEE--------EEEEEEECGGGCEECSSTTCCEEEEEEETTSCEEE
T ss_pred -hccchHHHHHHHHHHHhchhhcccccCCCCCCCCCC--------ceEEEEEecCeeEEeecccCeEEEEEEccCCCEEE
Confidence 1111 1111 1111111110111111234556555 257889986 7899999999999999999999999
Q ss_pred EEeecCCcchhhhHHHHHHHHHHHHHHhcCccccccceeeeeceEEEcCCCCceeEecCCCcchHHHhhhhccCCCCCCC
Q 001139 814 QLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGR 893 (1143)
Q Consensus 814 ~l~K~g~ddlR~D~r~~Ql~~~~N~ll~~~~et~~r~L~i~~y~Vipls~~~gliE~v~~~~~l~~il~~~~~~~~~~~~ 893 (1143)
||+|.| ||+|||+++||+|++||.+|++++ ++|.+++|.|||+++++||||||++ +|+.+++...
T Consensus 368 ~i~K~g-DDLRQD~~~~Ql~~l~n~il~~~~----ldL~i~~Y~Vipls~~~GlIE~V~~-~tl~~il~~~--------- 432 (614)
T 3ls8_A 368 VIFKHG-DDLRQDQLILQIISLMDKLLRKEN----LDLKLTPYKVLATSTKHGFMQFIQS-VPVAEVLDTE--------- 432 (614)
T ss_dssp EEEEES-SCCHHHHHHHHHHHHHHHHHHHTT----CCCCCCCCCEEESSSSEEEEECCCC-EEHHHHHHHT---------
T ss_pred EEEecC-CcchHHHHHHHHHHHHHHHHHhcC----CCceeeccEEEEecCCCceEEEeCC-ccHHHHHHcc---------
Confidence 999965 999999999999999999999875 8999999999999999999999997 5788776420
Q ss_pred CCCCcchhHHHHhhccchHhHHHHHHHHHHhhhhhHHHHHHHhcCCchHH----HHHHHHHHHhhhhHHHHHHhhccCCC
Q 001139 894 YGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYW----FEKRLAYTRSVAASSMVGYIVGLGDR 969 (1143)
Q Consensus 894 ~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~~~~~~~w----~~~r~~f~~S~A~~Si~~yilglgDR 969 (1143)
..+.+||.+.++++..| +.+|.+|++|+|+|||+|||||||||
T Consensus 433 ---------------------------------~~l~~~f~~~~~~~~~~~~~~~~a~~nF~~S~A~ySvv~YILGigDR 479 (614)
T 3ls8_A 433 ---------------------------------GSIQNFFRKYAPSENGPNGISAEVMDTYVKSCAGYCVITYILGVGDR 479 (614)
T ss_dssp ---------------------------------SSHHHHHHHHSBCTTSGGGBCHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred ---------------------------------ChHHHHHHHhCCCccccccccHHHHHHHHHHHHHHhHhheeeeccCC
Confidence 01456777778877766 47999999999999999999999999
Q ss_pred CCCceEEecCCCeEEEeecchhhccccCCCCCCCCCccccHHHHhhhccccccc--chHHHHHHHHHHHhhChHHHHHHH
Q 001139 970 HAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEG--VFRRCCEKTLSVMRTNKEALLTIV 1047 (1143)
Q Consensus 970 h~~NIll~~~tG~v~hiDfg~~f~~~~~l~~pE~VPFRLT~~i~~~~g~~g~eG--~F~~~~~~~~~~Lr~~~~~l~~~L 1047 (1143)
|++||||| .||++||||||++|+++ |.||+||||||+||+++||+.|+|| .|+.+|+.++.+||+|.+.|++++
T Consensus 480 H~~NILld-~tG~v~HIDFG~~f~~~---p~pe~vPFRLT~~mv~~mG~~~~e~f~~Fr~~c~~~~~~LR~~~~~il~l~ 555 (614)
T 3ls8_A 480 HLDNLLLT-KTGKLFHIDFGYILGRD---PKPLPPPMKLNKEMVEGMGGTQSEQYQEFRKQCYTAFLHLRRYSNLILNLF 555 (614)
T ss_dssp CTTSEEEC-TTSCEEECCCSSCTTCC---SSSSCCSSCCCHHHHHHTTCTTSHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred CCcceeEc-CCCCEeeeehHHhhccC---CCCCCCCeecCHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHCHHHHHHHH
Confidence 99999999 69999999999999987 5799999999999999999999997 999999999999999999999999
Q ss_pred HHHccCCccccccCh
Q 001139 1048 EVFIHDPLYKWALSP 1062 (1143)
Q Consensus 1048 ~~f~~Dpl~~w~~~~ 1062 (1143)
++|+.+++.+|...+
T Consensus 556 ~lM~~s~lp~~~~~~ 570 (614)
T 3ls8_A 556 SLMVDANIPDIALEP 570 (614)
T ss_dssp HTTTTSCCHHHHTSG
T ss_pred HHHhcCCCCccccCh
Confidence 999999999886543
No 3
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=100.00 E-value=7.5e-58 Score=576.52 Aligned_cols=415 Identities=20% Similarity=0.276 Sum_probs=313.8
Q ss_pred HHHHHHHHHHhccCCCcchhhHHHHHhhhccCC------------CcHHHHHHHHHhhcccCccchhHchHHHHhhhCCC
Q 001139 575 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 642 (1143)
Q Consensus 575 ~~Al~~Yl~sL~~~~~~~~~~~~RllsLWf~~~------------~~~~v~~~l~~~~~~ip~~k~l~~ipQL~srL~~~ 642 (1143)
..||..+++|+.+++..+...+..++.-|-..+ .++.|.....+.+.+.|...++..+|||++.|.++
T Consensus 592 p~aL~k~l~sv~w~~~~e~~e~~~lL~~W~~i~p~~ALeLL~~~f~d~~VR~yAV~~L~~~~d~~l~~yLpQLVQaLkyE 671 (1092)
T 2y3a_A 592 PQSLPKLLLSIKWNKLEDVAQLQALLQIWPKLPPREALELLDFNYPDQYVREYAVGCLRQMSDEELSQYLLQLVQVLKYE 671 (1092)
T ss_dssp GGGHHHHHHHSCTTCHHHHHHHHHHHHTSCCCCHHHHGGGGSTTCCCTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHhhcCCCCHHHHHHHHHHHccCCCCCHHHHHHhcCccCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 459999999999998877777889999996554 34568899999999999999999999999999986
Q ss_pred ccccccccHHHHHHHHHHHHHHhCCh---hhHHHHHhcccccchhhhhccccchhhhhhHHHHHHHHHHHHH----hhHH
Q 001139 643 KDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELS----SYHG 715 (1143)
Q Consensus 643 ~~~~~~~~f~~~L~~ll~~i~~~hP~---~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~----~~~~ 715 (1143)
+.. .+.|..+|++.|...|. +.+|.|.+........ .+ ...+++.+. ....
T Consensus 672 ~~~------~s~L~~fLl~ra~~n~~i~h~l~W~L~~e~~~~~~~----~r------------~~~lle~~~~~~~~~~~ 729 (1092)
T 2y3a_A 672 PFL------DCALSRFLLERALDNRRIGQFLFWHLRSEVHTPAVS----VQ------------FGVILEAYCRGSVGHMK 729 (1092)
T ss_dssp SSS------SCHHHHHHHHHHTSCSSHHHHHHHHHHHHHTSHHHH----HH------------HHHHHHHHHHHTTTTHH
T ss_pred ccc------ccHHHHHHHHHHhhChHHHHHHHHHeeecccCchHH----HH------------HHHHHHHHHhhcHHHHH
Confidence 431 14688999999988654 7889888765432110 01 112333322 1222
Q ss_pred HHHHHHHHHHHHHHHHhhhhhc---ccccccccc-cchhhhhhcccccccccccccCCCCCCCcCCCCcCcccccc-ceE
Q 001139 716 AIIRQMKQMVDVYIKLAELETR---REDTNKRIQ-LPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLA-ESV 790 (1143)
Q Consensus 716 ~~~~~~~~~~~~~~~la~~~~~---~~~~~~~~~-~~~~~~~l~~l~~~p~~t~~lp~~~~~~~~~~~~~~i~~~~-~~~ 790 (1143)
.+.++ ..+++.+.+++..... +....++.. +...+........+ +...+|.+| ...|.+|. +.+
T Consensus 730 ~l~~Q-~~~~~~L~~is~~ik~~~~~~~r~k~~e~L~~~l~~~~~~~~~--~~~~lP~~P--------~v~I~~~~~~~~ 798 (1092)
T 2y3a_A 730 VLSKQ-VEALNKLKTLNSLIKLNAVKLSRAKGKEAMHTCLKQSAYREAL--SDLQSPLNP--------CVILSELYVEKC 798 (1092)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHSTTHHHHT--SSSCCSSCS--------SBCCCCCCGGGC
T ss_pred HHHHH-HHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhccchhhcC--CCCCCCCCC--------ceEEEEEecCce
Confidence 23333 3556666666653211 111111111 11111111000111 123455544 34677887 478
Q ss_pred EEecCCCCceEEEEEcCC--CCeeeEEeecCCcchhhhHHHHHHHHHHHHHHhcCccccccceeeeeceEEEcCCCCcee
Q 001139 791 MVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGIL 868 (1143)
Q Consensus 791 ~v~~s~~~Pk~i~~~gsd--G~~y~~l~K~g~ddlR~D~r~~Ql~~~~N~ll~~~~et~~r~L~i~~y~Vipls~~~gli 868 (1143)
.|++|+++|++|+|+|+| |+.|.||+|.| ||+|||+|+||+|++||.+|++++ ++|.+++|.|||+++++|||
T Consensus 799 ~V~~S~~~P~rL~~~gsD~~G~~y~~L~K~g-DDLRQD~rv~Ql~~lmn~ll~~~~----~~L~i~~Y~Vipls~~~GLI 873 (1092)
T 2y3a_A 799 KYMDSKMKPLWLVYSSRAFGEDSVGVIFKNG-DDLRQDMLTLQMLRLMDLLWKEAG----LDLRMLPYGCLATGDRSGLI 873 (1092)
T ss_dssp EECSSTTCCEEEEEECTTTSSSEEEEEECCS-SCCHHHHHHHHHHHHHHHHHHHHS----CCCCCCCCCEECCSSSCCEE
T ss_pred EEeccccCceEEEEEecCCCCceeeEEEecC-cccchhHHHHHHHHHHHHHHHhCC----CCeEEecceEEEecCCCCeE
Confidence 999999999999999999 99999999965 999999999999999999999874 89999999999999999999
Q ss_pred EecCCCcchHHHhhhhccCCCCCCCCCCCcchhHHHHhhccchHhHHHHHHHHHHhhhhhHHHHHHHhcCCchHHHHHHH
Q 001139 869 EWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRL 948 (1143)
Q Consensus 869 E~v~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~~~~~~~w~~~r~ 948 (1143)
|||+|+.|+++|+... ++.... . .| -.+++++||.+.+ .+..|+.+|+
T Consensus 874 E~V~ns~TL~~I~~~~---~~~~~~---------------~-------~f------~~~~L~~~~~~~~-~~~~~~~ar~ 921 (1092)
T 2y3a_A 874 EVVSTSETIADIQLNS---SNVAAT---------------A-------AF------NKDALLNWLKEYN-SGDDLDRAIE 921 (1092)
T ss_dssp ECCTTCCBHHHHHSSS---CTTTTT---------------S-------CS------STTHHHHHHHHHC-CTHHHHHHHH
T ss_pred eeCCCCccHHHHHHhh---ccchhh---------------h-------cc------CchHHHHHHHHhC-CHHHHHHHHH
Confidence 9999999999987531 110000 0 00 0236788999988 4467788899
Q ss_pred HHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhcccc-CCC-CCCCCCccccHHHHhhhccc--ccc--
Q 001139 949 AYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL-MLK-TPERVPFRLTRDIIDGMGVT--GVE-- 1022 (1143)
Q Consensus 949 ~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~~~-~l~-~pE~VPFRLT~~i~~~~g~~--g~e-- 1022 (1143)
+|++|+|+|||+||||||||||++|||||. ||++||||||++|+.++ .+. .||+|||||||||+++||+. |.+
T Consensus 922 nF~~SlA~ySvv~YILGlGDRH~~NILid~-tG~v~HIDFG~~f~~~~~~l~~~pE~VPFRLT~~mv~~mg~g~~~~s~~ 1000 (1092)
T 2y3a_A 922 EFTLSCAGYCVASYVLGIGDRHSDNIMVKK-TGQLFHIDFGHILGNFKSKFGIKRERVPFILTYDFIHVIQQGKTGNTEK 1000 (1092)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCTTTEEECT-TSCEEECCCSCCSSCCCCGGGCCCCCCCCCCCHHHHHHHHTTCSSCSSS
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCccEEEec-CCCEEEEeehhhhhcCCccCCCCCCCCCccCCHHHHHHHccCCCCCCcc
Confidence 999999999999999999999999999995 99999999999999864 344 49999999999999999753 444
Q ss_pred -cchHHHHHHHHHHHhhChHHHHHHHHHHccCCcccccc
Q 001139 1023 -GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1060 (1143)
Q Consensus 1023 -G~F~~~~~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~w~~ 1060 (1143)
|.|+.+|+.++++||++++.|+++|++|++|||.+|..
T Consensus 1001 fg~Fr~~c~~a~~~LR~~~~~Il~ll~lml~~~Lp~~~~ 1039 (1092)
T 2y3a_A 1001 FGRFRQCCEDAYLILRRHGNLFITLFALMLTAGLPELTS 1039 (1092)
T ss_dssp TTHHHHHHHHHHHHHHHTHHHHHHHHHHTSTTCCSSCSS
T ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCccccc
Confidence 99999999999999999999999999999999999963
No 4
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=100.00 E-value=5e-58 Score=574.61 Aligned_cols=415 Identities=17% Similarity=0.245 Sum_probs=309.5
Q ss_pred HHHHHHHHHHhccCCCcchhhHHHHHhhhccCC------------CcHHHHHHHHHhhcccCccchhHchHHHHhhhCCC
Q 001139 575 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 642 (1143)
Q Consensus 575 ~~Al~~Yl~sL~~~~~~~~~~~~RllsLWf~~~------------~~~~v~~~l~~~~~~ip~~k~l~~ipQL~srL~~~ 642 (1143)
..||..+++|+.+++......+..+|.-|-..+ .++.|.....+.+.+.|...++..+|||++.|.++
T Consensus 439 p~aL~~~l~sv~w~~~~~~~~~~~ll~~W~~~~~~~ALeLL~~~f~d~~Vr~yAv~~L~~~~d~~l~~yL~QLVQaLkyE 518 (940)
T 2wxf_A 439 PEALARLLLVTKWNKHEDVAQMLYLLCSWPELPVLSALELLDFSFPDCYVGSFAIKSLRKLTDDELFQYLLQLVQVLKYE 518 (940)
T ss_dssp GGGHHHHHTTSCTTCHHHHHHHHHHHHTCCCCCHHHHHHHTSTTCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHGGGC
T ss_pred chHHHHHHhccCCCCHHHHHHHHHHHccCCCCCHHHHHHhcCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhc
Confidence 459999999999998777777889999997664 35678889999999999999999999999999987
Q ss_pred ccccccccHHHHHHHHHHHHHHhC---ChhhHHHHHhcccccchhhhhccccchhhhhhHHHHHHHHHHHHHh----hHH
Q 001139 643 KDALGLHNFQFALVSLVKKMAIDH---PYHTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSS----YHG 715 (1143)
Q Consensus 643 ~~~~~~~~f~~~L~~ll~~i~~~h---P~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~----~~~ 715 (1143)
+.. .+.|..+|++.|... +|+.+|.|.+........ .+ ...+++.+.. ...
T Consensus 519 ~~~------~s~L~~fLl~ra~~n~~i~h~l~W~l~~e~~~~~~~----~r------------~~~ile~~~~~~~~~~~ 576 (940)
T 2wxf_A 519 SYL------DCELTKFLLGRALANRKIGHFLFWHLRSEMHVPSVA----LR------------FGLIMEAYCRGSTHHMK 576 (940)
T ss_dssp SSS------SCHHHHHHHHHHHHCHHHHHHHHHHHHTTTTCHHHH----HH------------HHHHHHHHHHHCHHHHH
T ss_pred ccc------ccHHHHHHHHHHHhChHHHHHHHHHheecccCchHH----HH------------HHHHHHHHHhhcHHHHH
Confidence 431 145888888888865 457889998765432110 01 1123333222 122
Q ss_pred HHHHHHHHHHHHHHHHhhhhhc---ccccccccc-cchhhhhhcccccccccccccCCCCCCCcCCCCcCcccccc-ceE
Q 001139 716 AIIRQMKQMVDVYIKLAELETR---REDTNKRIQ-LPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLA-ESV 790 (1143)
Q Consensus 716 ~~~~~~~~~~~~~~~la~~~~~---~~~~~~~~~-~~~~~~~l~~l~~~p~~t~~lp~~~~~~~~~~~~~~i~~~~-~~~ 790 (1143)
.+.+ ...+++.+.+++..... +....++.. +...+........+| ...+|.+| ...|.+|. +.+
T Consensus 577 ~l~~-q~~~~~~L~~i~~~ik~~~~~~~r~k~~~~L~~~l~~~~~~~~~~--~~~lP~~P--------~~~I~~~~~~~~ 645 (940)
T 2wxf_A 577 VLMK-QGEALSKLKALNDFVKVSSQKTTKPQTKEMMHMCMRQETYMEALS--HLQSPLDP--------STLLEEVCVEQC 645 (940)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHTSHHHHHHHS--SEEETTEE--------EEEECEECGGGC
T ss_pred HHHH-HHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHhccchhhccC--CCCCCCCC--------ceeEEEeccCce
Confidence 2222 23556666666653221 110111110 111111111011111 23345443 24678887 578
Q ss_pred EEecCCCCceEEEEEcCC---CCeeeEEeecCCcchhhhHHHHHHHHHHHHHHhcCccccccceeeeeceEEEcCCCCce
Q 001139 791 MVMNGINAPKVVECFGSD---GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGI 867 (1143)
Q Consensus 791 ~v~~s~~~Pk~i~~~gsd---G~~y~~l~K~g~ddlR~D~r~~Ql~~~~N~ll~~~~et~~r~L~i~~y~Vipls~~~gl 867 (1143)
.|++|+++|++|+|+|+| |+.|.||+|.| ||+|||+|+||+|++||.+|++++ ++|.+++|.|||+++++||
T Consensus 646 ~V~~S~~~P~~l~~~gsD~~~G~~~~~i~K~g-DDLRqD~rv~Ql~~lmn~il~~~~----~~L~i~~Y~Vipls~~~Gl 720 (940)
T 2wxf_A 646 TFMDSKMKPLWIMYSSEEAGSAGNVGIIFKNG-DDLRQDMLTLQMIQLMDVLWKQEG----LDLRMTPYGCLPTGDRTGL 720 (940)
T ss_dssp EECSSTTCCEEEEEECTTTGGGGCEEEEEEES-SCCHHHHHHHHHHHHHHHHHHHTT----CCCCCCCCCEEEEETTEEE
T ss_pred EEcccccCCeEEEEEecCcCCCcceeEEEecC-cccchhHHHHHHHHHHHHHHHhCC----CCeEEEeeeEEEecCCCCe
Confidence 999999999999999999 99999999965 999999999999999999999984 8999999999999999999
Q ss_pred eEecCCCcchHHHhhhhccCCCCCCCCCCCcchhHHHHhhccchHhHHHHHHHHHHhhhhhHHHHHHHhcCCchHHHHHH
Q 001139 868 LEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKR 947 (1143)
Q Consensus 868 iE~v~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~~~~~~~w~~~r 947 (1143)
||||+|+.|+++|+... ++.... . .| -.+.+++||.+.++ +..|+.+|
T Consensus 721 IE~V~ns~tl~~I~~~~---~~~~~~---------------~-------~f------~~~~l~~~~~~~~~-~~~~~~a~ 768 (940)
T 2wxf_A 721 IEVVLHSDTIANIQLNK---SNMAAT---------------A-------AF------NKDALLNWLKSKNP-GEALDRAI 768 (940)
T ss_dssp EECCSSEEEHHHHHTCC---SSSTTC---------------C-------SS------GGGHHHHHHHHHSC-TTHHHHHH
T ss_pred EeECCCCccHHHHHHhh---ccchhh---------------h-------cc------CchhHHHHHHHhCC-HHHHHHHH
Confidence 99999999999997531 110000 0 00 02367889999994 46777888
Q ss_pred HHHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhcccc-CCCC-CCCCCccccHHHHhhhccc--ccc-
Q 001139 948 LAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL-MLKT-PERVPFRLTRDIIDGMGVT--GVE- 1022 (1143)
Q Consensus 948 ~~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~~~-~l~~-pE~VPFRLT~~i~~~~g~~--g~e- 1022 (1143)
.+|++|+|+|||+||||||||||++|||||. ||+++|||||++|++++ .+.+ ||+|||||||||+++||+. |.+
T Consensus 769 ~~F~~S~A~~Svv~YILGlgDRH~~NILid~-tG~v~HIDFG~~f~~~~~~l~~~pE~VPFRLT~~mv~~mg~g~~~~s~ 847 (940)
T 2wxf_A 769 EEFTLSCAGYCVATYVLGIGDRHSDNIMIRE-SGQLFHIDFGHFLGNFKTKFGINRERVPFILTYDFVHVIQQGKTNNSE 847 (940)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCGGGEEEET-TSCEEECCCCCCTTCC---------CCCCCCCHHHHHHHTTTCSCCHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCcccEEEec-CCCEEEEeehhhhcccccccCCCCCCCCccCCHHHHHHHcCCCCCCCc
Confidence 9999999999999999999999999999995 99999999999999864 4554 9999999999999999863 444
Q ss_pred --cchHHHHHHHHHHHhhChHHHHHHHHHHccCCcccccc
Q 001139 1023 --GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1060 (1143)
Q Consensus 1023 --G~F~~~~~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~w~~ 1060 (1143)
|.|+.+|+.++++||++++.|+++|++|++|||.+|..
T Consensus 848 ~~g~Fr~~c~~~~~~LR~~~~~ll~ll~lml~~~lp~~~~ 887 (940)
T 2wxf_A 848 KFERFRGYCERAYTILRRHGLLFLHLFALMRAAGLPELSC 887 (940)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHGGGCCTTSCS
T ss_pred chhhHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCCcccCc
Confidence 89999999999999999999999999999999999974
No 5
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=100.00 E-value=3.4e-58 Score=575.97 Aligned_cols=414 Identities=21% Similarity=0.298 Sum_probs=311.9
Q ss_pred HHHHHHHHHHhccCCCcchhhHHHHHhh---hc--cCC------------CcHHHHHHHHHhhcccCccchhHchHHHHh
Q 001139 575 GLALEGYKRCLVIGDKYDVRVVFRLVSL---WF--SLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIAS 637 (1143)
Q Consensus 575 ~~Al~~Yl~sL~~~~~~~~~~~~RllsL---Wf--~~~------------~~~~v~~~l~~~~~~ip~~k~l~~ipQL~s 637 (1143)
..|+..+++|+.+.+......+..+|.- |- ... .++.|.....+.+..+|...++..+|||++
T Consensus 445 p~aL~k~l~sv~w~~~~~v~e~~~lL~~~~~W~~~~~~~~~ALeLL~~~f~d~~VR~yAV~~L~~~~d~~l~~YL~QLVQ 524 (961)
T 1e7u_A 445 PKAYPKLFSSVKWGQQEIVAKTYQLLAKREVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLEDDDVLHYLLQLVQ 524 (961)
T ss_dssp GGGHHHHHTSSCTTCHHHHHHHHHHHHCCHHHHHSCCCHHHHHHTTSTTCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cHHHHHHheecCCCCHHHHHHHHHHHhccCCCCCCCCCHHHHHHhcCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4689999999999998777788999988 93 222 356788999999999999999999999999
Q ss_pred hhCCCccccccccHHHHHHHHHHHHHHhCCh---hhHHHHHhcccccchhhhhccccchhhhhhHHHHHHHHHHHHHhhH
Q 001139 638 RMGSTKDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSSYH 714 (1143)
Q Consensus 638 rL~~~~~~~~~~~f~~~L~~ll~~i~~~hP~---~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~ 714 (1143)
.|.++... .+.|..+|++.|...+. +.+|.|.+...... . ...+ ...+++.+....
T Consensus 525 aLkyE~~~------~s~L~~fLl~ra~~n~~i~h~l~W~l~~e~~~~~-~--~~~r------------~~~ll~~~l~~~ 583 (961)
T 1e7u_A 525 AVKFEPYH------DSALARFLLKRGLRNKRIGHFLFWFLRSEIAQSR-H--YQQR------------FAVILEAYLRGC 583 (961)
T ss_dssp HGGGCSSS------SCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCT-T--THHH------------HHHHHHHHHTTS
T ss_pred HHhhcccc------CChHHHHHHHHHhcChHHHHHHHHHhhhhccCCh-h--HHHH------------HHHHHHHHHhhc
Confidence 99986431 14688899999887654 67788876531100 0 0001 112333322211
Q ss_pred -H---HHHHHHHHHHHHHHHHhhhhhccccccccccc--------chhhhhhcccccccccccccCCCCCCCcCCCCcCc
Q 001139 715 -G---AIIRQMKQMVDVYIKLAELETRREDTNKRIQL--------PREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPY 782 (1143)
Q Consensus 715 -~---~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~--------~~~~~~l~~l~~~p~~t~~lp~~~~~~~~~~~~~~ 782 (1143)
. ..+..-..+++.+.+++...... .. .+..+ ...+..+...+ +| .+..+|.+|. ..
T Consensus 584 ~~~~~~~~~~q~~~~~~L~~i~~~ik~~-~~-~~~~~~~~~~~~l~~~L~~l~~i~-vP-~~~~lP~dP~--------v~ 651 (961)
T 1e7u_A 584 GTAMLHDFTQQVQVIDMLQKVTIDIKSL-SA-EKYDVSSQVISQLKQKLENLQNLN-LP-QSFRVPYDPG--------LK 651 (961)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSGGG-GC-CSSCCCHHHHHHHHHHHHHHHHTT-SC-SCEEETTEEE--------EE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhh-cc-ccccchhhHHHHHHHHHHhhhcCc-CC-CCccCCCCCc--------eE
Confidence 1 11222234555666666432111 00 01111 11222333222 22 1344555542 34
Q ss_pred cccc-cceEEEecCCCCceEEEEEcCCCC-----eeeEEeecCCcchhhhHHHHHHHHHHHHHHhcCccccccceeeeec
Q 001139 783 FKGL-AESVMVMNGINAPKVVECFGSDGH-----KYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTY 856 (1143)
Q Consensus 783 i~~~-~~~~~v~~s~~~Pk~i~~~gsdG~-----~y~~l~K~g~ddlR~D~r~~Ql~~~~N~ll~~~~et~~r~L~i~~y 856 (1143)
|.+| .+.+.|++|+++|++|+|+|+||+ .|.||+|.| ||+|||+|+||+|++||.+|+++ +|+|.+++|
T Consensus 652 i~~i~~~~~~V~~S~~~P~~l~~~g~Dg~~~~~~~~~~i~K~g-DDLRQD~~v~Ql~~lmn~il~~~----~~~L~i~~Y 726 (961)
T 1e7u_A 652 AGALVIEKCKVMASKKKPLWLEFKCADPTALSNETIGIIFKHG-DDLRQDMLILQILRIMESIWETE----SLDLCLLPY 726 (961)
T ss_dssp EEEECGGGCEECSSTTCCEEEEEEESCTTCSCCCCEEEEEEES-SCCHHHHHHHHHHHHHHHHHHHT----TCCCCCCCC
T ss_pred EEEeecceEEEecccCCceEEEEEccCCCcccCCceeEEEecC-cccccchhHHHHHHHHHHHHhhc----CCCeEEEee
Confidence 5554 577899999999999999999995 899999965 99999999999999999999875 489999999
Q ss_pred eEEEcCCCCceeEecCCCcchHHHhhhhccCCCCCCCCCCCcchhHHHHhhccchHhHHHHHHHHHHhhhhhHHHHHHHh
Q 001139 857 KVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLER 936 (1143)
Q Consensus 857 ~Vipls~~~gliE~v~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~ 936 (1143)
.|||+++++||||||+|+.|+++|+.... +..+.+ . .+++++||.+.
T Consensus 727 ~Vipls~~~GlIE~V~ns~tl~~I~~~~~---g~~~~f--------------~----------------~~~L~~w~~~~ 773 (961)
T 1e7u_A 727 GCISTGDKIGMIEIVKDATTIAKIQQSTV---GNTGAF--------------K----------------DEVLSHWLKEK 773 (961)
T ss_dssp CEEEEETTEEEEECCSSEEEHHHHHHHHS---CSSSCC--------------C----------------SSHHHHHHHHH
T ss_pred eEEECCCCCCeEEecCCCccHHHHHHhcc---Cccccc--------------c----------------hhHHHHHHHHh
Confidence 99999999999999999999999986432 111110 0 13588899999
Q ss_pred cCCchHHHHHHHHHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhccccC-CC-CCCCCCccccHHHHh
Q 001139 937 FLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LK-TPERVPFRLTRDIID 1014 (1143)
Q Consensus 937 ~~~~~~w~~~r~~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~~~~-l~-~pE~VPFRLT~~i~~ 1014 (1143)
+++++.|+.+|++|++|+|+|||+||||||||||++|||||. ||+++|||||++|++++. ++ .||+|||||||||++
T Consensus 774 ~~~~~~~~~ar~~F~~S~A~ySvv~YILGigDRH~~NILid~-tG~v~HIDFG~~f~~~~~~l~~~pE~vPFRLT~~mv~ 852 (961)
T 1e7u_A 774 CPIEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMISE-TGNLFHIDFGHILGNYKSFLGINKERVPFVLTPDFLF 852 (961)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCGGGEEEET-TCCEEECCCCCC----------CCCCCSSCCCHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHccccCCCCcceEEec-CCCEEEEeehhhhccCccccCCCCCCCCcccCHHHHH
Confidence 999999999999999999999999999999999999999995 999999999999999875 44 599999999999999
Q ss_pred hhcccccc-----cchHHHHHHHHHHHhhChHHHHHHHHHHccCCcccccc
Q 001139 1015 GMGVTGVE-----GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1060 (1143)
Q Consensus 1015 ~~g~~g~e-----G~F~~~~~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~w~~ 1060 (1143)
+||+.|++ |.|+.+|+.++++||++++.|++++++|++|||.+|..
T Consensus 853 ~mG~~g~e~s~~fg~F~~~c~~~~~~LR~~~~~l~~ll~lm~~~~lp~~~~ 903 (961)
T 1e7u_A 853 VMGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLIILFSMMLMTGMPQLTS 903 (961)
T ss_dssp HTTCCSSCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHSCSSCCC
T ss_pred HhcccCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCccCc
Confidence 99999998 89999999999999999999999999999999999963
No 6
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=100.00 E-value=3e-56 Score=556.88 Aligned_cols=417 Identities=18% Similarity=0.283 Sum_probs=309.2
Q ss_pred HHHHHHHHHhccCCCcchhhHHHHHhhhccCC------------CcHHHHHHHHHhh-cccCccchhHchHHHHhhhCCC
Q 001139 576 LALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTI-DEVQSYKFIPLVYQIASRMGST 642 (1143)
Q Consensus 576 ~Al~~Yl~sL~~~~~~~~~~~~RllsLWf~~~------------~~~~v~~~l~~~~-~~ip~~k~l~~ipQL~srL~~~ 642 (1143)
.||..+++|+.+++......+..+|.-|-..+ .++.|.....+.+ .+.|...++..+|||+.-|.++
T Consensus 586 ~aL~k~L~sV~W~~~~e~~e~~~LL~~W~~i~~~~ALeLL~~~f~d~~VR~yAV~~L~~~~~ddeLl~YLlQLVQALKyE 665 (1091)
T 3hhm_A 586 EILPKLLLSVKWNSRDEVAQMYCLVKDWPPIKPEQAMELLDCNYPDPMVRGFAVRCLEKYLTDDKLSQYLIQLVQVLKYE 665 (1091)
T ss_dssp GGHHHHHTTSCTTCHHHHHHHHHHHHTCCCCCHHHHHHTTSTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHGGGGC
T ss_pred hHHHHHheeCCCCCHHHHHHHHHHHhcCCCCCHHHHHHhCcccCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhc
Confidence 69999999999998877777899999997654 3567888889999 9999999999999999999986
Q ss_pred ccccccccHHHHHHHHHHHHHHhCCh---hhHHHHHhcccccchhhhhccccchhhhhhHHHHHHHHHHHHHhhHHHHHH
Q 001139 643 KDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSSYHGAIIR 719 (1143)
Q Consensus 643 ~~~~~~~~f~~~L~~ll~~i~~~hP~---~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~ 719 (1143)
+.. .+.|..+|++.|...|. +.+|.|.+........ .+... ..+.++.........+.+
T Consensus 666 ~~~------ds~La~FLl~RAl~n~~igh~lfW~L~~E~~~~~~~----~r~~~--------lLe~~~~~~~~~~~~l~r 727 (1091)
T 3hhm_A 666 QYL------DNLLVRFLLKKALTNQRIGHFFFWHLKSEMHNKTVS----QRFGL--------LLESYCRACGMYLKHLNR 727 (1091)
T ss_dssp SSS------SCHHHHHHHHHHTTCHHHHHHHHHHHHTTTTCTTTH----HHHHH--------HHHHHHHHSCTHHHHHHH
T ss_pred ccc------ccHHHHHHHHHHhhCHHHHHHHHHHeeecccCchHH----HHHHH--------HHHHHHhhCHHHHHHHHH
Confidence 431 25699999999998886 5678887765332110 01000 111122221122223333
Q ss_pred HHHHHHHHHHHHhhhhhcc-cccccc--cc-cchhhhhhcccccccccccccCCCCCCCcCCCCcCcccccc-ceEEEec
Q 001139 720 QMKQMVDVYIKLAELETRR-EDTNKR--IQ-LPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLA-ESVMVMN 794 (1143)
Q Consensus 720 ~~~~~~~~~~~la~~~~~~-~~~~~~--~~-~~~~~~~l~~l~~~p~~t~~lp~~~~~~~~~~~~~~i~~~~-~~~~v~~ 794 (1143)
+ ..+++.+.+++...... .+..++ .. +...+......+.+ ....+|.+|. ..|.+|. +++.|++
T Consensus 728 Q-~~~~~~L~~is~~ik~~~~~~~~~~k~~~L~~~L~~~~~~~~~--~~~~lPl~P~--------~~I~~i~~~~~~V~~ 796 (1091)
T 3hhm_A 728 Q-VEAMEKLINLTDILKQEKKDETQKVQMKFLVEQMRRPDFMDAL--QGFLSPLNPA--------HQLGNLRLEECRIMS 796 (1091)
T ss_dssp H-HHHHHHHHHHHHHTTSTTCCSCHHHHHHHHHHHHHSHHHHHHS--SSEEETTEEE--------EEECSBCGGGCEECC
T ss_pred H-HHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHhccchhhcc--cCCCCCCCcc--------eEEEEEeeceEEEee
Confidence 3 35666666666542211 000111 11 11112211111111 1234566553 3567777 4679999
Q ss_pred CCCCceEEEEEcCC--CCee----eEEeecCCcchhhhHHHHHHHHHHHHHHhcCccccccceeeeeceEEEcCCCCcee
Q 001139 795 GINAPKVVECFGSD--GHKY----RQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGIL 868 (1143)
Q Consensus 795 s~~~Pk~i~~~gsd--G~~y----~~l~K~g~ddlR~D~r~~Ql~~~~N~ll~~~~et~~r~L~i~~y~Vipls~~~gli 868 (1143)
|+++|++|+|+|+| |+.| .||+|.| ||||||+++||+|++||.+|++++ ++|.+++|.|||+++++|||
T Consensus 797 S~~~P~~L~f~g~D~~G~~y~~~~~~i~K~g-DDLRQD~~v~Qli~lmn~il~~~~----~dL~l~~Y~Vip~s~~~GlI 871 (1091)
T 3hhm_A 797 SAKRPLWLNWENPDIMSELLFQNNEIIFKNG-DDLRQDMLTLQIIRIMENIWQNQG----LDLRMLPYGCLSIGDCVGLI 871 (1091)
T ss_dssp SSSCCEEEEECCCSTTSTTTSCCEEEEEEES-SCCHHHHHHHHHHHHHHHHHHTTT----CCCCCCCCCEEEEETTEEEE
T ss_pred cccCcEEEEEecCCCCCccccccceEEEEcC-cchhHHHHHHHHHHHHHHHHHhCC----CCceEeeeeEEEccCCCcce
Confidence 99999999999998 8899 9999965 999999999999999999999985 89999999999999999999
Q ss_pred EecCCCcchHHHhhhhccCCCCCCCCCCCcchhHHHHhhccchHhHHHHHHHHHHhhhhhHHHHHHHhcCCchHHHHHHH
Q 001139 869 EWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRL 948 (1143)
Q Consensus 869 E~v~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~~~~~~~w~~~r~ 948 (1143)
|||+|++|+++|+.... .... . .| -.+++.+||.+.| ++..|+.+|+
T Consensus 872 E~V~ns~Tl~~I~~~~~----~~~~----------------~------~f------~~~~L~~~f~~~~-~~~~~~~ar~ 918 (1091)
T 3hhm_A 872 EVVRNSHTIMQIQCKGG----LKGA----------------L------QF------NSHTLHQWLKDKN-KGEIYDAAID 918 (1091)
T ss_dssp ECCSSEEEHHHHHHSCT----TTCT----------------T------CC------CTTHHHHHHHTTS-CTTSHHHHHH
T ss_pred eecCCchhHHHHHHhhC----cccc----------------c------cc------CchHHHHHHHhcC-ChHHHHHHHH
Confidence 99999999999986321 0000 0 00 0246788999888 6778889999
Q ss_pred HHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeecchhhcccc--CCCCCCCCCccccHHHHhhhcc--cccc--
Q 001139 949 AYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL--MLKTPERVPFRLTRDIIDGMGV--TGVE-- 1022 (1143)
Q Consensus 949 ~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDfg~~f~~~~--~l~~pE~VPFRLT~~i~~~~g~--~g~e-- 1022 (1143)
+|++|+|+|||+||||||||||++|||||+ ||++||||||++|+.++ ....||+||||||+||+++||+ .|+|
T Consensus 919 nF~~S~A~ysvv~YiLgigDRH~~NILid~-tG~v~HIDFG~~f~~~~~~~~~~~E~vPFrLT~~mv~vmg~G~~~~e~s 997 (1091)
T 3hhm_A 919 LFTRSCAGYCVATFILGIGDRHNSNIMVKD-DGQLFHIDFGHFLDHKKKKFGYKRERVPFVLTQDFLIVISKGAQECTKT 997 (1091)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCTTTEEEET-TSCEEECCCCCCSCC------------CCCCCHHHHHHSSCSSSCCSSS
T ss_pred HHHHHhhhhhheEEEEeecCCCCcceEEeC-CCCEEEEeehhhhccCCccCCCCcCCCCceeHHHHHHHHhcCCCCcccc
Confidence 999999999999999999999999999996 99999999999999874 3456999999999999999964 4444
Q ss_pred ---cchHHHHHHHHHHHhhChHHHHHHHHHHccCCcccccc
Q 001139 1023 ---GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1060 (1143)
Q Consensus 1023 ---G~F~~~~~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~w~~ 1060 (1143)
|.|+.+|+.++++||+|++.|++++++|+++||.+|..
T Consensus 998 ~~fg~Fr~~c~~a~~~LR~~~~~il~LlelM~~s~lp~~~~ 1038 (1091)
T 3hhm_A 998 REFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPELQS 1038 (1091)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHGGGSCCTTCSS
T ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCccCc
Confidence 99999999999999999999999999999999999963
No 7
>1w1n_A Phosphatidylinositol 3-kinase TOR1; target of rapamycin, Ser/Thr kinase, redox-regulation, disulfide bond, transferase; NMR {Saccharomyces cerevisiae} PDB: 2kio_A 2kit_A
Probab=99.48 E-value=7.1e-15 Score=104.99 Aligned_cols=32 Identities=38% Similarity=0.636 Sum_probs=31.0
Q ss_pred ccCHHHHHHHHHHHccChhhhHhhCcccccCC
Q 001139 1112 MRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL 1143 (1143)
Q Consensus 1112 ~~sv~~~V~~LI~~Atd~~nL~~m~~gW~pwl 1143 (1143)
++||++||++||++|||++|||+||+||+||+
T Consensus 2 ~lsv~~QV~~LI~~At~~~NL~~my~GW~p~w 33 (33)
T 1w1n_A 2 ELDVPEQVDKLIQQATSIERLCQHYIGWCPFW 33 (33)
T ss_dssp CSCSTHHHHHHHHHHHHHHHHHTTSCSCCTTC
T ss_pred CCCHHHHHHHHHHHhcCHHHHHHHhhhcccCC
Confidence 68999999999999999999999999999996
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.19 E-value=0.2 Score=57.66 Aligned_cols=310 Identities=10% Similarity=0.027 Sum_probs=169.5
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
+..+|....++|-|..|+-+++..++.. | ..+...-.|..+|..+++++.+.-+... +
T Consensus 29 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~--------p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 94 (450)
T 2y4t_A 29 HLELGKKLLAAGQLADALSQFHAAVDGD--------P------DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFT 94 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--------C------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 3468899999999999999999765321 1 2245667789999999999988777542 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchh------------h
Q 001139 87 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPY------------K 153 (1143)
Q Consensus 87 -~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 153 (1143)
.....+.-|...|++++|+.+|+..+...|.. .. ..... .
T Consensus 95 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------------------~~----~~~~~~~l~~~~~~~~~~ 147 (450)
T 2y4t_A 95 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE-----------------------NE----EKEAQSQLIKSDEMQRLR 147 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCH-----------------------HH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----------------------hh----hHHHHHHHHHHHHHHHHH
Confidence 23467788999999999999999998865540 00 00111 2
Q ss_pred hHHHHHHhhchhhHHHHHHhhhccccCCCCCCcchhHHHHHHHHcCCCCCCCcccCCCCCCCCCCCccchhhhhHHHHHH
Q 001139 154 GLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLT 233 (1143)
Q Consensus 154 gllrcL~~LG~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~eaAWrl~~Wd~~~~~~~~~~~~~~~~~~~~f~~~l~~~L~ 233 (1143)
.+..++...|.++....+.+......+ ......-....+....|+++....+. ...... .+...... ...+..
T Consensus 148 ~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~-~~~~~~~~--~~l~~~ 220 (450)
T 2y4t_A 148 SQALNAFGSGDYTAAIAFLDKILEVCV---WDAELRELRAECFIKEGEPRKAISDL-KAASKL-KNDNTEAF--YKISTL 220 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCGGGGHHHH-HHHHHH-HCSCHHHH--HHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHCCCHHHHHHHH-HHHHHh-CCCCHHHH--HHHHHH
Confidence 224557777887777655543322211 11222234567778888888643321 000000 01111111 112223
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccccccccCCCCcc
Q 001139 234 ALREGDSEEFYRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIP 313 (1143)
Q Consensus 234 al~~~d~~~~~~~l~~aR~~l~~~Ls~~~~ES~~~~y~~l~~Lq~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (1143)
....|+.+.+...++++.. +... ....+..+..+..+...-........
T Consensus 221 ~~~~g~~~~A~~~~~~~~~-----~~p~----~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 269 (450)
T 2y4t_A 221 YYQLGDHELSLSEVRECLK-----LDQD----HKRCFAHYKQVKKLNKLIESAEELIR---------------------- 269 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHH-----HCTT----CHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
T ss_pred HHHcCCHHHHHHHHHHHHH-----hCCC----hHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 3456777777776665532 1110 11111111111111110000110000
Q ss_pred cchhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHccCChHHHHHHHHHHHhhcCC
Q 001139 314 TVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCK-DFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTG 392 (1143)
Q Consensus 314 ~~~~~~~l~~~W~~rl~~~~~~~~~~E~iL~~R~~ll~~l~~~-~~~~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~ 392 (1143)
. .++ -+.+-.+++. +.+.... .....+|...+.+..+.|++..|...+.++..+..
T Consensus 270 -~------------------g~~--~~A~~~~~~~-l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p- 326 (450)
T 2y4t_A 270 -D------------------GRY--TDATSKYESV-MKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP- 326 (450)
T ss_dssp -H------------------TCH--HHHHHHHHHH-HHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-
T ss_pred -c------------------CCH--HHHHHHHHHH-HhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-
Confidence 0 000 0111111111 1111111 11234567778889999999999999888765521
Q ss_pred CCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001139 393 PGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 433 (1143)
Q Consensus 393 ~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~ 433 (1143)
....+.+..|.++...|+...|+..++..+...+
T Consensus 327 -------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 327 -------DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360 (450)
T ss_dssp -------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred -------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 1123456789999999999999999998876443
No 9
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.07 E-value=0.24 Score=54.54 Aligned_cols=308 Identities=11% Similarity=0.031 Sum_probs=170.3
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
+..+|......|-|..|+-+++..+... +..+...-.+..+|..+++++.+...... +
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~--------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 71 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGD--------------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT 71 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc
Confidence 4578999999999999999999865431 12345667789999999999988777532 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhh---hcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhH-------
Q 001139 87 -KLSSQIVTLEHEGNWSKALEYYELQVRSDV---MLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGL------- 155 (1143)
Q Consensus 87 -~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl------- 155 (1143)
.......-|...|++++|+.+|+..+...| . .......+
T Consensus 72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------------------~~~~~~~l~~~~~~~ 121 (359)
T 3ieg_A 72 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQE------------------------------EKEAESQLVKADEMQ 121 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHH------------------------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccC------------------------------hHHHHHHHHHHHHHH
Confidence 235677899999999999999999998766 3 11112222
Q ss_pred -----HHHHHhhchhhHHHHHHhhhccccCCCCCCcchhHHHHHHHHcCCCCCCCcccCCCCCCCCCCCccchhhhhHHH
Q 001139 156 -----MRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHS 230 (1143)
Q Consensus 156 -----lrcL~~LG~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~eaAWrl~~Wd~~~~~~~~~~~~~~~~~~~~f~~~l~~ 230 (1143)
..++...|.++....+.+......+ ..+...-....+...+|+|+....... ..... .+..... ....
T Consensus 122 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~-~~~~~-~~~~~~~--~~~l 194 (359)
T 3ieg_A 122 RLRSQALDAFDGADYTAAITFLDKILEVCV---WDAELRELRAECFIKEGEPRKAISDLK-AASKL-KSDNTEA--FYKI 194 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHTT-CSCCHHH--HHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CchHHHHHHHHHHHHCCCHHHHHHHHH-HHHHh-CCCCHHH--HHHH
Confidence 4677888888777666554332221 122233345667778888875332110 00000 1111111 1122
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccccccccCCC
Q 001139 231 CLTALREGDSEEFYRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEP 310 (1143)
Q Consensus 231 ~L~al~~~d~~~~~~~l~~aR~~l~~~Ls~~~~ES~~~~y~~l~~Lq~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (1143)
+......|+.+.+...++++.. +...... ....|..+..+.....+..+.. ..
T Consensus 195 a~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~---~~------------------ 247 (359)
T 3ieg_A 195 STLYYQLGDHELSLSEVRECLK-----LDQDHKR-CFAHYKQVKKLNKLIESAEELI---RD------------------ 247 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH-----HCTTCHH-HHHHHHHHHHHHHHHHHHHHHH---HT------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHh-----hCccchH-HHHHHHHHHHHHHHHHHHHHHH---Hc------------------
Confidence 3334456777777666665532 1100000 0001111111111111111100 00
Q ss_pred CcccchhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHccCChHHHHHHHHHHHhhc
Q 001139 311 VIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLY 390 (1143)
Q Consensus 311 ~~~~~~~~~~l~~~W~~rl~~~~~~~~~~E~iL~~R~~ll~~l~~~~~~~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~ 390 (1143)
++...-...+++-+.....+ .......+...+.+..+.|++..|...+.++..+.
T Consensus 248 -----~~~~~A~~~~~~~~~~~~~~--------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 302 (359)
T 3ieg_A 248 -----GRYTDATSKYESVMKTEPSV--------------------AEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME 302 (359)
T ss_dssp -----TCHHHHHHHHHHHHHHCCSS--------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -----CCHHHHHHHHHHHHhcCCCc--------------------hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 00000001111111111000 01122345567788889999999999988876552
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001139 391 TGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 433 (1143)
Q Consensus 391 ~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~ 433 (1143)
. ......+..|.++...|+...|+..++..+...+
T Consensus 303 ~--------~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 303 P--------DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp T--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred c--------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 1 1123457789999999999999999998876544
No 10
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=96.57 E-value=0.22 Score=56.39 Aligned_cols=141 Identities=13% Similarity=0.016 Sum_probs=96.9
Q ss_pred HHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c----c
Q 001139 17 RVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H----K 87 (1143)
Q Consensus 17 ~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~----~ 87 (1143)
.+|....+.|-|..|+-+++...... | ..+...-.|..+|.+.++.|.+.-.... + .
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~--------p------~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~ 69 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQE--------P------DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEA 69 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhC--------C------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHH
Confidence 46888899999999999988755321 1 2345667788999999999987665431 1 2
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhH
Q 001139 88 LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHV 167 (1143)
Q Consensus 88 l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~ 167 (1143)
....+.-|.+.|++++|+.+|+..+...|+ ..+.+.++..++...|.++.
T Consensus 70 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------------------------------~~~~~~~l~~~~~~~g~~~~ 119 (388)
T 1w3b_A 70 YSNLGNVYKERGQLQEAIEHYRHALRLKPD------------------------------FIDGYINLAAALVAAGDMEG 119 (388)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHHSCSSH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCcc------------------------------hHHHHHHHHHHHHHcCCHHH
Confidence 356788899999999999999999987665 23456788889999999887
Q ss_pred HHHHHhhhccccCCCCCCcchhHHHHHHHHcCCCCCC
Q 001139 168 LDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDF 204 (1143)
Q Consensus 168 l~~~~~~l~~~~~~~~~~~~~~~~~~eaAWrl~~Wd~ 204 (1143)
...+.+......+ . ..........+...+|+++.
T Consensus 120 A~~~~~~al~~~p--~-~~~~~~~l~~~~~~~g~~~~ 153 (388)
T 1w3b_A 120 AVQAYVSALQYNP--D-LYCVRSDLGNLLKALGRLEE 153 (388)
T ss_dssp HHHHHHHHHHHCT--T-CTHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHhCC--C-cHHHHHHHHHHHHHccCHHH
Confidence 7555543222211 1 11122233455666777764
No 11
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=96.41 E-value=0.53 Score=53.13 Aligned_cols=336 Identities=10% Similarity=0.001 Sum_probs=175.4
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
...++....+++.+..|..+.+..+... +......-.|..+|...++.|.+...... +
T Consensus 36 ~~~l~~~~~~~~~~~~a~~~~~~a~~~~--------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 101 (388)
T 1w3b_A 36 LLLLSSIHFQCRRLDRSAHFSTLAIKQN--------------PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI 101 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchH
Confidence 3467888899999999999998765321 12345667799999999999988776432 2
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchh
Q 001139 87 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 165 (1143)
Q Consensus 87 -~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~ 165 (1143)
.....+..|.+.|++++|+.+|+..+...|+ .......+-.++..+|.+
T Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------------------------~~~~~~~l~~~~~~~g~~ 151 (388)
T 1w3b_A 102 DGYINLAAALVAAGDMEGAVQAYVSALQYNPD------------------------------LYCVRSDLGNLLKALGRL 151 (388)
T ss_dssp HHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT------------------------------CTHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------------------cHHHHHHHHHHHHHccCH
Confidence 1346777899999999999999999987665 123456677888999998
Q ss_pred hHHHHHHhhhccccCCCCCCcchhHHHHHHHHcCCCCCCCcccCCCCCCCCCCCccchhhhhHHHHHHHHhcCChHHHHH
Q 001139 166 HVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYR 245 (1143)
Q Consensus 166 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~eaAWrl~~Wd~~~~~~~~~~~~~~~~~~~~f~~~l~~~L~al~~~d~~~~~~ 245 (1143)
+....+.+......+ . ..........+..+.|+++...... ..... ..+........++ ......|+++.+..
T Consensus 152 ~~A~~~~~~al~~~p--~-~~~~~~~l~~~~~~~g~~~~A~~~~-~~al~-~~p~~~~~~~~lg--~~~~~~~~~~~A~~ 224 (388)
T 1w3b_A 152 EEAKACYLKAIETQP--N-FAVAWSNLGCVFNAQGEIWLAIHHF-EKAVT-LDPNFLDAYINLG--NVLKEARIFDRAVA 224 (388)
T ss_dssp HHHHHHHHHHHHHCT--T-CHHHHHHHHHHHHTTTCHHHHHHHH-HHHHH-HCTTCHHHHHHHH--HHHHTTTCTTHHHH
T ss_pred HHHHHHHHHHHHhCC--C-CHHHHHHHHHHHHHcCCHHHHHHHH-HHHHh-cCCCcHHHHHHHH--HHHHHcCCHHHHHH
Confidence 887655543322211 1 0111112234455666665322110 00000 0011111111222 22334566666666
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHhhhhccCCccccccccccccCCCCcccchhhhHHHHH
Q 001139 246 KLKHSKQELVLSVACASEESTEYIYSAIVKL-QILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTE 324 (1143)
Q Consensus 246 ~l~~aR~~l~~~Ls~~~~ES~~~~y~~l~~L-q~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 324 (1143)
..+++... . + + ...+|..+..+ ......+++.+...+.. . ..| ... ..
T Consensus 225 ~~~~al~~-----~--p-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------~-----~~p---~~~------~~ 273 (388)
T 1w3b_A 225 AYLRALSL-----S--P-N-HAVVHGNLACVYYEQGLIDLAIDTYRRAI--------E-----LQP---HFP------DA 273 (388)
T ss_dssp HHHHHHHH-----C--T-T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------H-----TCS---SCH------HH
T ss_pred HHHHHHhh-----C--c-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------h-----hCC---CCH------HH
Confidence 66554321 0 1 1 01112111111 11122222222100000 0 000 000 01
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhH
Q 001139 325 WSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLG 404 (1143)
Q Consensus 325 W~~rl~~~~~~~~~~E~iL~~R~~ll~~l~~~~~~~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~ 404 (1143)
|...-......-++-+.+-.+++. +.. .......|...+.+..+.|++..|...+.++..+. |....+
T Consensus 274 ~~~l~~~~~~~g~~~~A~~~~~~a-l~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~ 341 (388)
T 1w3b_A 274 YCNLANALKEKGSVAEAEDCYNTA-LRL---CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--------PEFAAA 341 (388)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHH-HHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC--------TTCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-Hhh---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCcHHH
Confidence 111111111111111222222221 111 12234567778888899999999988887775431 222234
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccCCCchhHHHHHhhh
Q 001139 405 RLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGK 447 (1143)
Q Consensus 405 ~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a~~~~llg~ 447 (1143)
....+.++...|+...|+..++..+...+ ..+.++..+|.
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p---~~~~a~~~lg~ 381 (388)
T 1w3b_A 342 HSNLASVLQQQGKLQEALMHYKEAIRISP---TFADAYSNMGN 381 (388)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTCT---TCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHhHHH
Confidence 56788899999999999999888775332 33455555554
No 12
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=96.27 E-value=0.26 Score=59.20 Aligned_cols=65 Identities=15% Similarity=-0.103 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 001139 360 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENY 432 (1143)
Q Consensus 360 ~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~ 432 (1143)
...|...+.++++.|+++.|...+.++..+.. .........+.+++..|+.+.|+..++..+...
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLST--------NDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 55677778888888888888888777655431 111334567788888888888888887776544
No 13
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=95.94 E-value=1 Score=53.85 Aligned_cols=87 Identities=9% Similarity=0.045 Sum_probs=63.4
Q ss_pred HHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc----c-----
Q 001139 16 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS----H----- 86 (1143)
Q Consensus 16 ~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~----~----- 86 (1143)
..++.+..++|.|..|+.+++..... +..+.....|..+|...++.|.+..+... .
T Consensus 121 ~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 185 (597)
T 2xpi_A 121 FWLAQVYCCTGDYARAKCLLTKEDLY---------------NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKN 185 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCGG---------------GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC-----
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHhcc---------------ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccc
Confidence 45667777777777777766643210 12345677899999999999988877651 1
Q ss_pred ----------------chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 87 ----------------KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 87 ----------------~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
.....+.-|.+.|++++|+.+|+..++.+|+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 232 (597)
T 2xpi_A 186 ANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK 232 (597)
T ss_dssp -----CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch
Confidence 2356788999999999999999999887664
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=95.76 E-value=0.69 Score=50.22 Aligned_cols=87 Identities=8% Similarity=-0.072 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCC-CCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCCch
Q 001139 360 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQ-CSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEA 438 (1143)
Q Consensus 360 ~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~-~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~ 438 (1143)
...|...+.+..+.|+++.|...+.++..+....... ..+....+....|.++...|+...|+..++..+...+. .
T Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---~ 269 (330)
T 3hym_B 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ---N 269 (330)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---C
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc---c
Confidence 4456777888899999999999988877654221111 11222234577899999999999999999988765433 2
Q ss_pred hHHHHHhhhhH
Q 001139 439 PDVYRLVGKWL 449 (1143)
Q Consensus 439 a~~~~llg~Wl 449 (1143)
+.++..+|...
T Consensus 270 ~~~~~~la~~~ 280 (330)
T 3hym_B 270 ASTYSAIGYIH 280 (330)
T ss_dssp SHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 33444444433
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=94.66 E-value=4 Score=43.97 Aligned_cols=63 Identities=13% Similarity=-0.058 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001139 361 QHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISEN 431 (1143)
Q Consensus 361 ~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~ 431 (1143)
..|...+.+..+.|+++.|...+.++..+... ...+....|.++...|+...|+..++..+..
T Consensus 237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 237 PLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ--------NASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc--------chHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 45667788889999999999999888665321 1234567899999999999999998876543
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=94.10 E-value=10 Score=44.22 Aligned_cols=66 Identities=9% Similarity=-0.146 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001139 360 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 433 (1143)
Q Consensus 360 ~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~ 433 (1143)
...|...+.+....|++..|...+.++..+.. ....+.+..+.++...|+...|+..++..+...+
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 341 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNP--------EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Confidence 45677888889999999999998888765431 1123456788999999999999999988776543
No 17
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=94.03 E-value=2.2 Score=46.61 Aligned_cols=79 Identities=10% Similarity=0.006 Sum_probs=53.7
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCch-hhhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCCchhHHH
Q 001139 364 LESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTV-YWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVY 442 (1143)
Q Consensus 364 l~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~-~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a~~~ 442 (1143)
+..+.+..+.|+++.|...+.++...... .+. .....+..|.++...|+...|+..++..+...+. .+.++
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~ 309 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPS-----VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD---NVNAL 309 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCS-----SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc---cHHHH
Confidence 34477888999999999999887655321 111 1122356789999999999999999988775432 24455
Q ss_pred HHhhhhHH
Q 001139 443 RLVGKWLA 450 (1143)
Q Consensus 443 ~llg~Wla 450 (1143)
..+|....
T Consensus 310 ~~~~~~~~ 317 (359)
T 3ieg_A 310 KDRAEAYL 317 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 18
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=93.95 E-value=4.6 Score=46.79 Aligned_cols=64 Identities=17% Similarity=0.067 Sum_probs=46.5
Q ss_pred HHHHHHHHHHc---cCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001139 362 HLLESASTLRK---GFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 433 (1143)
Q Consensus 362 ~wl~~a~laRk---~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~ 433 (1143)
.|...+.+..+ .|++..|...+.++..+.. ....+.+..|.++...|+...|+..++..+...+
T Consensus 414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 414 PLVGKATLLTRNPTVENFIEATNLLEKASKLDP--------RSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc--------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 57777888888 8888888888877755421 1123446788888899999999988887766543
No 19
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=93.60 E-value=2.8 Score=47.88 Aligned_cols=79 Identities=11% Similarity=0.021 Sum_probs=53.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCch-hhhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCCchhHH
Q 001139 363 LLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTV-YWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDV 441 (1143)
Q Consensus 363 wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~-~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a~~ 441 (1143)
++..+..+.+.|++..|...+.++..+... .+. ........+.++...|+...|+..++..+...+. .+.+
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~ 331 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPS-----IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD---NVNA 331 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-----SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-----chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHH
Confidence 345588889999999999999888665321 111 1123466789999999999999999988765432 2344
Q ss_pred HHHhhhhH
Q 001139 442 YRLVGKWL 449 (1143)
Q Consensus 442 ~~llg~Wl 449 (1143)
+..+|.-.
T Consensus 332 ~~~l~~~~ 339 (450)
T 2y4t_A 332 LKDRAEAY 339 (450)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 20
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=93.50 E-value=0.21 Score=47.24 Aligned_cols=87 Identities=15% Similarity=0.086 Sum_probs=69.1
Q ss_pred HHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c----c
Q 001139 17 RVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H----K 87 (1143)
Q Consensus 17 ~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~----~ 87 (1143)
..|.+..+-|-|..|+-+++..++.. +..+...-.+-.+|..+++.+.+...... + .
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEAVKRD--------------PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--------------CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 46888999999999999999876431 12355667789999999999987776432 1 2
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 88 LSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 88 l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
.-....-|...|++++|+.+|+.+++.+|+
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 113 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPS 113 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcC
Confidence 346788999999999999999999998776
No 21
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=91.87 E-value=1 Score=46.90 Aligned_cols=143 Identities=9% Similarity=-0.005 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
+..+|......|-|..|+-+++..+... +........|..+|...++++.+..+... +
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~--------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 105 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID--------------PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA 105 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC--------------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH
Confidence 3467888899999999999999765431 11245566788899999999988776532 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHh--hhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhc
Q 001139 87 -KLSSQIVTLEHEGNWSKALEYYELQVR--SDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVG 163 (1143)
Q Consensus 87 -~l~~~i~~yE~~g~w~~Al~~Ye~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG 163 (1143)
.....+.-|...|++++|+.+|+..+. ..|. .......+..++...|
T Consensus 106 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~------------------------------~~~~~~~la~~~~~~g 155 (252)
T 2ho1_A 106 RVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE------------------------------RSRVFENLGLVSLQMK 155 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTT------------------------------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcc------------------------------cHHHHHHHHHHHHHcC
Confidence 124567789999999999999999887 2221 2344567778889999
Q ss_pred hhhHHHHHHhhhccccCCCCCCcchhHHHHHHHHcCCCCCC
Q 001139 164 CMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDF 204 (1143)
Q Consensus 164 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~eaAWrl~~Wd~ 204 (1143)
.++....+.+....... .........+.+....|+|+.
T Consensus 156 ~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 156 KPAQAKEYFEKSLRLNR---NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp CHHHHHHHHHHHHHHCS---CCHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHcCCHHH
Confidence 98887666553322211 112222334566777888775
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=91.76 E-value=3.6 Score=45.35 Aligned_cols=65 Identities=18% Similarity=0.027 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 001139 360 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENY 432 (1143)
Q Consensus 360 ~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~ 432 (1143)
...|...+.+..+.|++..|...+.++..+.. ....+.+..|.++...|+...|+..++..+...
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQP--------GYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 45677888999999999999999988766531 112345778999999999999999998776543
No 23
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=91.66 E-value=0.37 Score=49.89 Aligned_cols=149 Identities=11% Similarity=0.001 Sum_probs=85.5
Q ss_pred cccccCHHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc---
Q 001139 9 YWLSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS--- 85 (1143)
Q Consensus 9 ~wL~Id~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~--- 85 (1143)
.|-...+..+|......|.|..|+-+++..+.. . +......-.|..+|...++++.+..+...
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 85 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--------N------KEDAIPYINFANLLSSVNELERALAFYDKALE 85 (243)
T ss_dssp ----------------------CCTTHHHHHTT--------C------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------C------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566778899999999999999999976532 1 12245666788999999999988777542
Q ss_pred --c----chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHH
Q 001139 86 --H----KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSL 159 (1143)
Q Consensus 86 --~----~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL 159 (1143)
+ .....+.-|...|++++|+.+|+..++..|. .......+..++
T Consensus 86 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------------------------------~~~~~~~~a~~~ 135 (243)
T 2q7f_A 86 LDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME------------------------------NGDLFYMLGTVL 135 (243)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC------------------------------SHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------------------------------CHHHHHHHHHHH
Confidence 1 1245677899999999999999999887554 123456777889
Q ss_pred HhhchhhHHHHHHhhhccccCCCCCCcchhHHHHHHHHcCCCCCC
Q 001139 160 QQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDF 204 (1143)
Q Consensus 160 ~~LG~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~eaAWrl~~Wd~ 204 (1143)
...|.++....+.+....... ......-....+....|+|+.
T Consensus 136 ~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 136 VKLEQPKLALPYLQRAVELNE---NDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHTSCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCCHH
T ss_pred HHhccHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHcCCHHH
Confidence 999998887766654322211 112222234566677788874
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=91.61 E-value=7 Score=43.15 Aligned_cols=66 Identities=14% Similarity=-0.046 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 001139 359 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENY 432 (1143)
Q Consensus 359 ~~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~ 432 (1143)
....|...+.+..+.|++..|...+.++..+.. ....+.+..+.++...|+...|+..++..+...
T Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 246 DYSLWNRLGATLANGDRSEEAVEAYTRALEIQP--------GFIRSRYNLGISCINLGAYREAVSNFLTALSLQ 311 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 356788889999999999999999988766532 112345678999999999999999998776543
No 25
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=91.30 E-value=1.3 Score=43.15 Aligned_cols=114 Identities=13% Similarity=0.015 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
+..+|......|-|..|+-+++..... . +......-.+..+|...++++.+.-.... +
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 76 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDA--------D------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV 76 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCT--------T------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--------C------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Confidence 346788899999999999999865321 1 11244566788888888888877666431 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchh
Q 001139 87 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 165 (1143)
Q Consensus 87 -~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~ 165 (1143)
.....+..|...|++++|+.+|+..+...|. .......+..++...|.+
T Consensus 77 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------------------------------~~~~~~~~a~~~~~~~~~ 126 (186)
T 3as5_A 77 KVATVLGLTYVQVQKYDLAVPLLIKVAEANPI------------------------------NFNVRFRLGVALDNLGRF 126 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH------------------------------hHHHHHHHHHHHHHcCcH
Confidence 1235667788889999999999888876543 123345666777777776
Q ss_pred hHHHHHH
Q 001139 166 HVLDMYC 172 (1143)
Q Consensus 166 ~~l~~~~ 172 (1143)
+....+.
T Consensus 127 ~~A~~~~ 133 (186)
T 3as5_A 127 DEAIDSF 133 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655444
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=91.21 E-value=3.7 Score=44.19 Aligned_cols=66 Identities=18% Similarity=0.014 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001139 360 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 433 (1143)
Q Consensus 360 ~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~ 433 (1143)
...|...+.+....|+++.|...+.++..+... ...+.+..|.++...|+...|+..++..+...+
T Consensus 206 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 271 (327)
T 3cv0_A 206 AQLWNKLGATLANGNRPQEALDAYNRALDINPG--------YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQV 271 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 455777888899999999999998887655321 123456789999999999999999988766543
No 27
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=90.66 E-value=2.1 Score=43.91 Aligned_cols=115 Identities=9% Similarity=-0.054 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
+..+|......|-|..|+-+++..+... +......-.|..+|...+++|.+.-+... +
T Consensus 60 ~~~la~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 125 (243)
T 2q7f_A 60 YINFANLLSSVNELERALAFYDKALELD--------------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENG 125 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence 3467888899999999999999765321 12345566788999999999988777542 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchh
Q 001139 87 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 165 (1143)
Q Consensus 87 -~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~ 165 (1143)
.....+.-|...|++++|+.+|+..++..|. +......+..++...|.+
T Consensus 126 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------------------------------~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 126 DLFYMLGTVLVKLEQPKLALPYLQRAVELNEN------------------------------DTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc------------------------------cHHHHHHHHHHHHHcCCH
Confidence 1345677899999999999999999887554 123455667788888887
Q ss_pred hHHHHHHh
Q 001139 166 HVLDMYCK 173 (1143)
Q Consensus 166 ~~l~~~~~ 173 (1143)
+....+.+
T Consensus 176 ~~A~~~~~ 183 (243)
T 2q7f_A 176 DEALSQFA 183 (243)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76655443
No 28
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=90.57 E-value=1.8 Score=42.73 Aligned_cols=114 Identities=9% Similarity=0.022 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
|..+|.+-.+-|-|..|+-+++..++.. | ..+...-.|..+|..++++|........ +
T Consensus 8 y~~lG~~~~~~g~~~~A~~~~~~al~~~--------p------~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~ 73 (184)
T 3vtx_A 8 YMDIGDKKRTKGDFDGAIRAYKKVLKAD--------P------NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA 73 (184)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH
Confidence 4578999999999999999999876431 1 2345666789999999999987666431 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchh
Q 001139 87 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 165 (1143)
Q Consensus 87 -~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~ 165 (1143)
........+...|++++|...++.++...|. +......+-.++..+|.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~------------------------------~~~~~~~lg~~~~~~g~~ 123 (184)
T 3vtx_A 74 EAYYILGSANFMIDEKQAAIDALQRAIALNTV------------------------------YADAYYKLGLVYDSMGEH 123 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------------------------------chHHHHHHHHHHHHhCCc
Confidence 1345667889999999999999999887654 234455667788888887
Q ss_pred hHHHHHH
Q 001139 166 HVLDMYC 172 (1143)
Q Consensus 166 ~~l~~~~ 172 (1143)
+....+.
T Consensus 124 ~~A~~~~ 130 (184)
T 3vtx_A 124 DKAIEAY 130 (184)
T ss_dssp HHHHHHH
T ss_pred hhHHHHH
Confidence 7665444
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=90.47 E-value=22 Score=39.03 Aligned_cols=89 Identities=10% Similarity=0.074 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
+..+|.+..+.|-|..|+-+++..+... | ........|..+|...++.+.+.-+... +
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~--------p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 133 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD--------P------GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNL 133 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--------c------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence 7788999999999999999999876431 1 2355677899999999999988777542 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 87 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 87 -~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
.....+.-|...|++++|+.+|+..+...|.
T Consensus 134 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 165 (365)
T 4eqf_A 134 KALMALAVSYTNTSHQQDACEALKNWIKQNPK 165 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHhCcc
Confidence 2356778899999999999999999988776
No 30
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=90.37 E-value=1.5 Score=54.66 Aligned_cols=115 Identities=14% Similarity=0.034 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
+..+|.+..+-|-|..|+-+++..++-. | ........|-.+|..+++.|.+.-.... +
T Consensus 12 l~nLG~~~~~~G~~~eAi~~~~kAl~l~--------P------~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~ 77 (723)
T 4gyw_A 12 LNNLANIKREQGNIEEAVRLYRKALEVF--------P------EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 77 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------S------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 3468889999999999999999876431 2 2345566788999999999887666431 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchh
Q 001139 87 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 165 (1143)
Q Consensus 87 -~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~ 165 (1143)
.......-|...|++++|+.+|+.+++.+|+ ..+.+..+-.++..+|.+
T Consensus 78 ~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~------------------------------~~~a~~~Lg~~~~~~g~~ 127 (723)
T 4gyw_A 78 DAYSNMGNTLKEMQDVQGALQCYTRAIQINPA------------------------------FADAHSNLASIHKDSGNI 127 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------------------CHHHHHHHHHHHHHcCCH
Confidence 2346777899999999999999999987665 234567777888888987
Q ss_pred hHHHHHHh
Q 001139 166 HVLDMYCK 173 (1143)
Q Consensus 166 ~~l~~~~~ 173 (1143)
+.+..+.+
T Consensus 128 ~eAi~~~~ 135 (723)
T 4gyw_A 128 PEAIASYR 135 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77655443
No 31
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=90.22 E-value=1.4 Score=40.05 Aligned_cols=89 Identities=10% Similarity=0.051 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
+..+|......+-|..|+-+++..+... | ..+...-.+..+|...++++.+..+... +
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 80 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN--------P------ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS 80 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC--------C------CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCH
Confidence 4567889999999999999999765431 1 1245566788899999999887776532 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 87 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 87 -~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
........|...|++++|..+|+..+...|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 112 (131)
T 2vyi_A 81 KAYGRMGLALSSLNKHVEAVAYYKKALELDPD 112 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc
Confidence 2345677899999999999999999987664
No 32
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=89.94 E-value=1.8 Score=42.77 Aligned_cols=115 Identities=18% Similarity=0.153 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
+..+|.+-.+-|-|..|+-+++...... +..+.....+..++...++.+...-.... +
T Consensus 42 ~~~la~~~~~~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~ 107 (184)
T 3vtx_A 42 LLKLGKTYMDIGLPNDAIESLKKFVVLD--------------TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYA 107 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 3467888888999999999988765321 12345566777888888888877665431 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchh
Q 001139 87 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 165 (1143)
Q Consensus 87 -~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~ 165 (1143)
.......-|.+.|+|++|+.+|+..++.+|. +...+..+-.|+..+|.+
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~------------------------------~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 108 DAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG------------------------------FIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHhcch------------------------------hhhHHHHHHHHHHHCCCH
Confidence 2346778899999999999999999988765 234567788899999998
Q ss_pred hHHHHHHh
Q 001139 166 HVLDMYCK 173 (1143)
Q Consensus 166 ~~l~~~~~ 173 (1143)
+....+.+
T Consensus 158 ~~A~~~~~ 165 (184)
T 3vtx_A 158 DEAVKYFK 165 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88765554
No 33
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=89.68 E-value=1.7 Score=39.86 Aligned_cols=90 Identities=11% Similarity=0.066 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c--
Q 001139 14 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H-- 86 (1143)
Q Consensus 14 d~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~-- 86 (1143)
-+..+|......+-|..|+-+++..+... +......-.|..+|...+++|.+...... +
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 83 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN--------------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF 83 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC--------------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 35578999999999999999999765321 11245566788999999999988776532 1
Q ss_pred --chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 87 --KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 87 --~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
.......-|.+.|++++|..+|+..+...|.
T Consensus 84 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 116 (133)
T 2lni_A 84 IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS 116 (133)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC
Confidence 1345677899999999999999999987665
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=89.65 E-value=25 Score=37.88 Aligned_cols=85 Identities=14% Similarity=0.050 Sum_probs=61.0
Q ss_pred HHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhccccc------chhh
Q 001139 17 RVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSH------KLSS 90 (1143)
Q Consensus 17 ~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~~------~l~~ 90 (1143)
.=.+-+..-|.|..|+-+++.+... +| +...+..-+|..+|-.++++|.+....... .+..
T Consensus 4 ~~~~~~~~~g~y~~ai~~~~~~~~~--------~p-----~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~ 70 (291)
T 3mkr_A 4 FDVKNAFYIGSYQQCINEAQRVKPS--------SP-----ERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRM 70 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCC--------SH-----HHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccC--------Cc-----hhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHH
Confidence 3467788999999999999865311 00 111223356889999999999988765421 2345
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhh
Q 001139 91 QIVTLEHEGNWSKALEYYELQVRS 114 (1143)
Q Consensus 91 ~i~~yE~~g~w~~Al~~Ye~~l~~ 114 (1143)
.+.-|...|++++|+..++..+..
T Consensus 71 la~~~~~~~~~~~A~~~l~~ll~~ 94 (291)
T 3mkr_A 71 FAEYLASHSRRDAIVAELDREMSR 94 (291)
T ss_dssp HHHHHHCSTTHHHHHHHHHHHHHS
T ss_pred HHHHHcCCCcHHHHHHHHHHHHhc
Confidence 667888899999999999998765
No 35
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=89.61 E-value=29 Score=38.58 Aligned_cols=92 Identities=13% Similarity=0.056 Sum_probs=65.5
Q ss_pred HHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc----------
Q 001139 16 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS---------- 85 (1143)
Q Consensus 16 ~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~---------- 85 (1143)
..+|......|.|..|+-+++..++.. ++ +.......+..|-.+|...++.+.+.-....
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~--------~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 121 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAG--------TE--DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND 121 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--------CS--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhc--------cc--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC
Confidence 367888999999999999999876431 11 0000113456788888899998887665321
Q ss_pred -----cchhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 86 -----HKLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 86 -----~~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
..+......|...|++++|+.+|+.++...+.
T Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 158 (411)
T 4a1s_A 122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQ 158 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 12346777899999999999999999876543
No 36
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=89.18 E-value=2 Score=43.37 Aligned_cols=116 Identities=9% Similarity=0.026 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
+..+|......|-|..|+-+++..+... | ..+.....|..+|...++.+.+.-+... +
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 76 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSD--------P------KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA 76 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC--------c------cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 3467888999999999999998765421 1 1244556678888888888877666431 1
Q ss_pred -chhhHHHHHHhh-CCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhch
Q 001139 87 -KLSSQIVTLEHE-GNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGC 164 (1143)
Q Consensus 87 -~l~~~i~~yE~~-g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~ 164 (1143)
.....+.-|... |++++|+.+|+..++ .+.. |. .......+..++...|.
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~--------------~~-------------~~~~~~~l~~~~~~~~~ 128 (225)
T 2vq2_A 77 EINNNYGWFLCGRLNRPAESMAYFDKALA-DPTY--------------PT-------------PYIANLNKGICSAKQGQ 128 (225)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTC--------------SC-------------HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCC--------------cc-------------hHHHHHHHHHHHHHcCC
Confidence 123566677888 888888888888877 2210 00 22345566677777787
Q ss_pred hhHHHHHH
Q 001139 165 MHVLDMYC 172 (1143)
Q Consensus 165 ~~~l~~~~ 172 (1143)
++....+.
T Consensus 129 ~~~A~~~~ 136 (225)
T 2vq2_A 129 FGLAEAYL 136 (225)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76655444
No 37
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=88.83 E-value=2 Score=39.49 Aligned_cols=89 Identities=9% Similarity=-0.041 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
+..+|....+-|-|..|+-+++..+... +..+...-.+-.+|..+++.+.+.-.... +
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~--------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 72 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA--------------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV 72 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC--------------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Confidence 4567889999999999999999876431 12345667789999999999987766431 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 87 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 87 -~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
..-....-|...|++++|+.+|+..++..|+
T Consensus 73 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 104 (126)
T 3upv_A 73 RAYIRKATAQIAVKEYASALETLDAARTKDAE 104 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcc
Confidence 2346778899999999999999999998854
No 38
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=88.70 E-value=27 Score=37.04 Aligned_cols=91 Identities=12% Similarity=0.028 Sum_probs=70.1
Q ss_pred cCHHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c-
Q 001139 13 VDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H- 86 (1143)
Q Consensus 13 Id~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~- 86 (1143)
-.+..+|......|.|..|+-+++..+... | ......-.|..+|...++.|.+...... +
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 87 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA--------P------EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK 87 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------C------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Confidence 345688999999999999999999765431 1 1244556788999999999987766432 1
Q ss_pred ---chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 87 ---KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 87 ---~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
.....+..|...|++++|+.+|+..+...|.
T Consensus 88 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 121 (327)
T 3cv0_A 88 DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 121 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 2345678899999999999999999987665
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=88.17 E-value=1.7 Score=44.91 Aligned_cols=112 Identities=12% Similarity=-0.013 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
+..+|.+..+-|-|..|+-+++..+.. . +..+...-.|-.+|...+++|.+...... +
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~--------~------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~ 73 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKE--------N------PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL 73 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT--------S------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------C------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 356888999999999999999976532 1 22356667799999999999988776532 2
Q ss_pred -chhhHHHHHHhh-----------CCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhh
Q 001139 87 -KLSSQIVTLEHE-----------GNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKG 154 (1143)
Q Consensus 87 -~l~~~i~~yE~~-----------g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 154 (1143)
.......-|... |++++|+.+|+.+++..|+ +......
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~------------------------------~~~~~~~ 123 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR------------------------------YAPLHLQ 123 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT------------------------------CHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc------------------------------cHHHHHH
Confidence 124566678888 9999999999999998775 2234556
Q ss_pred HHHHHHhhchhhHHHH
Q 001139 155 LMRSLQQVGCMHVLDM 170 (1143)
Q Consensus 155 llrcL~~LG~~~~l~~ 170 (1143)
+-.++..+|.++....
T Consensus 124 lg~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 124 RGLVYALLGERDKAEA 139 (217)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCChHHHHH
Confidence 6677888888766543
No 40
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=88.14 E-value=2.1 Score=41.66 Aligned_cols=89 Identities=10% Similarity=-0.009 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
+..+|....+-+-|..|+-+++..++.. +..+..+-.|-.+|..+++.+.+.-.... +
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 79 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIA--------------PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYS 79 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 4568899999999999999999876431 12355667789999999999987776532 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 87 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 87 -~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
.......-|...|++++|+.+|+..++..|+
T Consensus 80 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 80 KAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 2356788899999999999999999998776
No 41
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=87.99 E-value=2.8 Score=37.87 Aligned_cols=115 Identities=16% Similarity=0.165 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
+..+|......|.|..|+-+++..+... | ......-.+..+|...++++....+... +
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 69 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD--------P------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA 69 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC--------C------cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch
Confidence 3467888899999999999999765321 1 1234455678888888998887666431 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchh
Q 001139 87 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 165 (1143)
Q Consensus 87 -~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~ 165 (1143)
.....+..|...|++++|+.+++..+...|. .......+.+++...|.+
T Consensus 70 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------------------------~~~~~~~la~~~~~~~~~ 119 (136)
T 2fo7_A 70 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------------------------------SAEAWYNLGNAYYKQGDY 119 (136)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------------------------------ChHHHHHHHHHHHHHccH
Confidence 1235677889999999999999999876553 123345667778888887
Q ss_pred hHHHHHHh
Q 001139 166 HVLDMYCK 173 (1143)
Q Consensus 166 ~~l~~~~~ 173 (1143)
+....+.+
T Consensus 120 ~~A~~~~~ 127 (136)
T 2fo7_A 120 DEAIEYYQ 127 (136)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76654443
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=87.84 E-value=2.9 Score=43.23 Aligned_cols=86 Identities=10% Similarity=0.070 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc---------
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS--------- 85 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~--------- 85 (1143)
+..+|......|-|..|+-+++..+... ..+...-.+..+|..+++.+.+.-....
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~---------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 72 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH---------------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR 72 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS---------------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh---------------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc
Confidence 4568899999999999999999765431 1244566788889999998887766431
Q ss_pred -------cchhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 001139 86 -------HKLSSQIVTLEHEGNWSKALEYYELQVRSD 115 (1143)
Q Consensus 86 -------~~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~ 115 (1143)
.........|...|++++|+.+|+..++..
T Consensus 73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 109 (258)
T 3uq3_A 73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH 109 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 112356778899999999999999988753
No 43
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=87.74 E-value=44 Score=38.25 Aligned_cols=87 Identities=10% Similarity=0.032 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
+..+|.+..+.|-|..|+-+++..+... | .+...-.|..+|..+++.+.+..+... +
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 73 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--------E-------DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYS 73 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--------C-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--------c-------cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHH
Confidence 4578999999999999999999865431 1 244566788899999999988877542 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 001139 87 -KLSSQIVTLEHEGNWSKALEYYELQVRSDV 116 (1143)
Q Consensus 87 -~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~ 116 (1143)
.....+.-|.+.|++++|+.+|+..+..+|
T Consensus 74 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 104 (514)
T 2gw1_A 74 KVLLRRASANEGLGKFADAMFDLSVLSLNGD 104 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 234677889999999999999999887654
No 44
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=86.93 E-value=3.4 Score=36.90 Aligned_cols=89 Identities=17% Similarity=0.182 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
+..+|......+.|..|+-+++..+... | ........+..+|...++++.+.-+... +
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 77 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD--------P------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--------c------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH
Confidence 3567888999999999999998765321 1 1244566788999999999987666431 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 87 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 87 -~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
.....+..|...|++++|..+|+..++..|.
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 109 (125)
T 1na0_A 78 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 1345677899999999999999999887654
No 45
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=86.51 E-value=3.5 Score=39.82 Aligned_cols=115 Identities=14% Similarity=0.087 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
+..+|......|.|..|+-+++..+... +..+...-.+..+|...++++.+.-.... +
T Consensus 45 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 110 (186)
T 3as5_A 45 ALHLGIAYVKTGAVDRGTELLERSLADA--------------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINF 110 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhH
Confidence 4567888899999999999999765431 11244566788899999999987776532 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchh
Q 001139 87 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 165 (1143)
Q Consensus 87 -~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~ 165 (1143)
.....+..|...|++++|..+|+..+...|. .......+..++...|.+
T Consensus 111 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------------------------------~~~~~~~la~~~~~~~~~ 160 (186)
T 3as5_A 111 NVRFRLGVALDNLGRFDEAIDSFKIALGLRPN------------------------------EGKVHRAIAFSYEQMGRH 160 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc------------------------------chHHHHHHHHHHHHcCCH
Confidence 1345677899999999999999999887554 124456777888999988
Q ss_pred hHHHHHHh
Q 001139 166 HVLDMYCK 173 (1143)
Q Consensus 166 ~~l~~~~~ 173 (1143)
+....+.+
T Consensus 161 ~~A~~~~~ 168 (186)
T 3as5_A 161 EEALPHFK 168 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87766554
No 46
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=86.33 E-value=2 Score=53.63 Aligned_cols=115 Identities=15% Similarity=0.092 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
+..+|.+-.+.|-|..|+-+++..++-. | .....+-.|-.+|..+++.|.+...... +
T Consensus 46 ~~nLg~~l~~~g~~~eA~~~~~~Al~l~--------P------~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~ 111 (723)
T 4gyw_A 46 HSNLASVLQQQGKLQEALMHYKEAIRIS--------P------TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFA 111 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 3468889999999999999999876431 1 2345666799999999999998776532 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchh
Q 001139 87 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 165 (1143)
Q Consensus 87 -~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~ 165 (1143)
.......-|...|++++|+.+|+.+++..|+ ..+.+..+..++..+|.|
T Consensus 112 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~------------------------------~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 112 DAHSNLASIHKDSGNIPEAIASYRTALKLKPD------------------------------FPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------------------------------CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------------------ChHHHhhhhhHHHhcccH
Confidence 2356788899999999999999999998775 235677888999999998
Q ss_pred hHHHHHHh
Q 001139 166 HVLDMYCK 173 (1143)
Q Consensus 166 ~~l~~~~~ 173 (1143)
.....+.+
T Consensus 162 ~~A~~~~~ 169 (723)
T 4gyw_A 162 TDYDERMK 169 (723)
T ss_dssp TTHHHHHH
T ss_pred HHHHHHHH
Confidence 87755443
No 47
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=86.27 E-value=43 Score=36.74 Aligned_cols=93 Identities=14% Similarity=0.073 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc---------
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS--------- 85 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~--------- 85 (1143)
....|......|.|..|+-+++..+... |+ +.......+..|..+|...++++.+......
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~--------~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 81 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVG--------TE--DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG 81 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CS--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--------cc--cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc
Confidence 3468999999999999999999876431 11 0001123455688899999999887776431
Q ss_pred ------cchhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 86 ------HKLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 86 ------~~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
.........|...|++++|+.+|+.++...+.
T Consensus 82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 119 (406)
T 3sf4_A 82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 119 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 01245677899999999999999999887654
No 48
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=85.55 E-value=4 Score=42.13 Aligned_cols=194 Identities=8% Similarity=-0.031 Sum_probs=113.8
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-cchhhHHH
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-HKLSSQIV 93 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-~~l~~~i~ 93 (1143)
+..+|.+....|-|..|+-+++..++..... .++ ........-.|..+|..++++|.+.-.... -.+.....
T Consensus 41 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 113 (258)
T 3uq3_A 41 LNNRAAAEYEKGEYETAISTLNDAVEQGREM----RAD---YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTAD 113 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCccc----ccc---hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhH
Confidence 4568899999999999999999876532110 000 001135566789999999999987766542 11222245
Q ss_pred HHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHHHHHHh
Q 001139 94 TLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCK 173 (1143)
Q Consensus 94 ~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~~~~~ 173 (1143)
.|.+.|++++|+..|+..+...|. .......+..++...|.++....+.+
T Consensus 114 ~~~~~~~~~~a~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~A~~~~~ 163 (258)
T 3uq3_A 114 ILTKLRNAEKELKKAEAEAYVNPE------------------------------KAEEARLEGKEYFTKSDWPNAVKAYT 163 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHH------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHcCcc------------------------------hHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 677788888888888887776554 23345566677777888777655554
Q ss_pred hhccccCCCCCCcchhHHHHHHHHcCCCCCCCcccCCCCCCCCCCCccchhhhhHHHHHHHHhcCChHHHHHHHHHHHH
Q 001139 174 GLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRKLKHSKQ 252 (1143)
Q Consensus 174 ~l~~~~~~~~~~~~~~~~~~eaAWrl~~Wd~~~~~~~~~~~~~~~~~~~~f~~~l~~~L~al~~~d~~~~~~~l~~aR~ 252 (1143)
......+ ..+...-....+..++|+|+....+.. .... ..+..... ....+......|+...+...++++..
T Consensus 164 ~a~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~-~al~-~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 164 EMIKRAP---EDARGYSNRAAALAKLMSFPEAIADCN-KAIE-KDPNFVRA--YIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHH-HCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCc---ccHHHHHHHHHHHHHhCCHHHHHHHHH-HHHH-hCHHHHHH--HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3322211 112222234566677777775433210 0000 00111111 22234445567999999888887643
No 49
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=85.32 E-value=3.6 Score=45.42 Aligned_cols=124 Identities=10% Similarity=-0.014 Sum_probs=86.3
Q ss_pred HHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c----
Q 001139 16 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H---- 86 (1143)
Q Consensus 16 ~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~---- 86 (1143)
..+|....+.|-|..|+-+++..+... +..+.....|..+|..+++++.+..+... +
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 286 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVR--------------PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 286 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 457888889999999999988765321 12245667789999999999998777542 1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhh
Q 001139 87 KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMH 166 (1143)
Q Consensus 87 ~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~ 166 (1143)
.....+.-|.+.|++++|..+|+..+...|+... . .+.. .+ ........+..|+..+|.++
T Consensus 287 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~-~~~~--------~~---------~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 287 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRG-P-RGEG--------GA---------MSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--------C--------CC---------CCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC-c-cccc--------cc---------hhhHHHHHHHHHHHHhCChH
Confidence 2356788999999999999999999988776100 0 0000 00 01345667888999999988
Q ss_pred HHHHHH
Q 001139 167 VLDMYC 172 (1143)
Q Consensus 167 ~l~~~~ 172 (1143)
....+.
T Consensus 348 ~A~~~~ 353 (368)
T 1fch_A 348 AYGAAD 353 (368)
T ss_dssp GHHHHH
T ss_pred hHHHhH
Confidence 765443
No 50
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=84.99 E-value=3 Score=40.71 Aligned_cols=54 Identities=6% Similarity=-0.005 Sum_probs=43.4
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHHH
Q 001139 90 SQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLD 169 (1143)
Q Consensus 90 ~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~ 169 (1143)
....-|...|++++|+.+|+.+++.+|+ +...+..+-.|+..+|.++...
T Consensus 75 ~lg~~~~~~g~~~~Ai~~~~~al~l~P~------------------------------~~~~~~~lg~~~~~lg~~~eA~ 124 (151)
T 3gyz_A 75 GLAAIYQIKEQFQQAADLYAVAFALGKN------------------------------DYTPVFHTGQCQLRLKAPLKAK 124 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSSS------------------------------CCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHhhCCC------------------------------CcHHHHHHHHHHHHcCCHHHHH
Confidence 4566788999999999999999998776 2345678888999999988876
Q ss_pred HHHh
Q 001139 170 MYCK 173 (1143)
Q Consensus 170 ~~~~ 173 (1143)
.+.+
T Consensus 125 ~~~~ 128 (151)
T 3gyz_A 125 ECFE 128 (151)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 51
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=84.89 E-value=4.9 Score=43.72 Aligned_cols=149 Identities=8% Similarity=-0.057 Sum_probs=90.0
Q ss_pred HHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhccccc-c---hhhH
Q 001139 16 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSH-K---LSSQ 91 (1143)
Q Consensus 16 ~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~~-~---l~~~ 91 (1143)
..+|..-..-+-+..|+--+|..+.... . +..+...-.|-.+|.+.+++|.+..+...+ . ....
T Consensus 69 ~~la~~~~~~~~~~~A~~~l~~ll~~~~------~------P~~~~~~~~la~~~~~~g~~~~Al~~l~~~~~~~~~~~l 136 (291)
T 3mkr_A 69 RMFAEYLASHSRRDAIVAELDREMSRSV------D------VTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMT 136 (291)
T ss_dssp HHHHHHHHCSTTHHHHHHHHHHHHHSCC------C------CSCHHHHHHHHHHHHHTTCHHHHHHHHTTCCSHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhccc------C------CCCHHHHHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHH
Confidence 3455555566678888888876543210 1 123445566778899999999888776542 2 2356
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHHHHH
Q 001139 92 IVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMY 171 (1143)
Q Consensus 92 i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~~~ 171 (1143)
+.-|.+.|++++|...|+..++..|+. .......+++..+...|.+.....+
T Consensus 137 ~~~~~~~g~~~~A~~~l~~~~~~~p~~----------------------------~~~~l~~a~~~l~~~~~~~~eA~~~ 188 (291)
T 3mkr_A 137 VQILLKLDRLDLARKELKKMQDQDEDA----------------------------TLTQLATAWVSLAAGGEKLQDAYYI 188 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------------HHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCc----------------------------HHHHHHHHHHHHHhCchHHHHHHHH
Confidence 678889999999999999988775540 0111223445555555776666555
Q ss_pred HhhhccccCCCCCCcchhHHHHHHHHcCCCCCCCcc
Q 001139 172 CKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLP 207 (1143)
Q Consensus 172 ~~~l~~~~~~~~~~~~~~~~~~eaAWrl~~Wd~~~~ 207 (1143)
.+......+ ..+...-..+.+..++|+|+....
T Consensus 189 ~~~~l~~~p---~~~~~~~~la~~~~~~g~~~eA~~ 221 (291)
T 3mkr_A 189 FQEMADKCS---PTLLLLNGQAACHMAQGRWEAAEG 221 (291)
T ss_dssp HHHHHHHSC---CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHH
Confidence 544333221 122222234567788899986544
No 52
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=84.81 E-value=62 Score=37.26 Aligned_cols=80 Identities=13% Similarity=0.046 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCCch
Q 001139 359 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEA 438 (1143)
Q Consensus 359 ~~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~ 438 (1143)
....|...+.+....|++..|...+.++..+... ...+.+..|.++...|+...|+..++..+...+..
T Consensus 309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--- 377 (537)
T 3fp2_A 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE--------NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL--- 377 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Confidence 3556888899999999999999999888665321 11345678999999999999999999887765432
Q ss_pred hHHHHHhhhhH
Q 001139 439 PDVYRLVGKWL 449 (1143)
Q Consensus 439 a~~~~llg~Wl 449 (1143)
+.++..+|.-.
T Consensus 378 ~~~~~~l~~~~ 388 (537)
T 3fp2_A 378 PEVPTFFAEIL 388 (537)
T ss_dssp THHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 33444444443
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=84.73 E-value=6.3 Score=40.73 Aligned_cols=115 Identities=10% Similarity=-0.080 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-------c-
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-------H- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-------~- 86 (1143)
+..+|......|.|..|+-+++..+... | ......-.|..+|...+++|.+.-+... +
T Consensus 74 ~~~la~~~~~~~~~~~A~~~~~~a~~~~--------~------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 139 (252)
T 2ho1_A 74 HAALAVVFQTEMEPKLADEEYRKALASD--------S------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE 139 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--------c------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcc
Confidence 3467888999999999999999765431 1 1245566788899999999887665421 1
Q ss_pred ---chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhc
Q 001139 87 ---KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVG 163 (1143)
Q Consensus 87 ---~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG 163 (1143)
.....+.-|...|++++|+.+|+..+...|. .......+..++..+|
T Consensus 140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~------------------------------~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN------------------------------QPSVALEMADLLYKER 189 (252)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------------------------------CHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc------------------------------cHHHHHHHHHHHHHcC
Confidence 1235667889999999999999999887554 1234567778888888
Q ss_pred hhhHHHHHHh
Q 001139 164 CMHVLDMYCK 173 (1143)
Q Consensus 164 ~~~~l~~~~~ 173 (1143)
.++....+.+
T Consensus 190 ~~~~A~~~~~ 199 (252)
T 2ho1_A 190 EYVPARQYYD 199 (252)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 8776655443
No 54
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=84.70 E-value=43 Score=35.29 Aligned_cols=92 Identities=14% Similarity=0.074 Sum_probs=66.8
Q ss_pred HHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc----------
Q 001139 16 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS---------- 85 (1143)
Q Consensus 16 ~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~---------- 85 (1143)
...|.....-|.|..|+-+++..+... |+ +.......+-.|..+|...++++...-....
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~--------~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 78 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVG--------TE--DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD 78 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--------CS--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC--------cc--cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc
Confidence 467889999999999999999876431 11 0001123455788899999999987766421
Q ss_pred -----cchhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 86 -----HKLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 86 -----~~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
........-|...|++++|+.+|+.++...+.
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 115 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 115 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 11345677899999999999999999887654
No 55
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=84.00 E-value=6.2 Score=37.50 Aligned_cols=89 Identities=13% Similarity=0.035 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
+..+|......|-|..|+-+++..+... | ......-.+..+|..+++.+.+...... +
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~--------~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~ 81 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN--------P------SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI 81 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC--------C------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence 4568889999999999999999765431 1 1244566788899999999987776431 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 87 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 87 -~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
..-..+.-|.+.|++++|..+|+..+...|.
T Consensus 82 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~ 113 (166)
T 1a17_A 82 KGYYRRAASNMALGKFRAALRDYETVVKVKPH 113 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 1345677899999999999999999987664
No 56
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=83.91 E-value=4.2 Score=41.82 Aligned_cols=115 Identities=9% Similarity=0.015 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhC-----------CChhhHhhcc
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQI-----------NEPDSLYGII 83 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L-----------~epD~~~Gi~ 83 (1143)
+..+|.+..+.|-|..|+-+++..+... | ..+...-.|-.+|... +++|.+.-..
T Consensus 42 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--------P------~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~ 107 (217)
T 2pl2_A 42 LYWLARTQLKLGLVNPALENGKTLVART--------P------RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVL 107 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C------CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHH
Confidence 3467888899999999999999765421 2 2345566788888888 8888776664
Q ss_pred cc-----c----chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhh
Q 001139 84 QS-----H----KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKG 154 (1143)
Q Consensus 84 ~~-----~----~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 154 (1143)
.. + .......-|...|++++|+.+|+.+++.+ + +.+....
T Consensus 108 ~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~------------------------------~~~~~~~ 156 (217)
T 2pl2_A 108 KDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-D------------------------------TPEIRSA 156 (217)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C------------------------------CHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c------------------------------chHHHHH
Confidence 31 2 13457778999999999999999999864 3 1244567
Q ss_pred HHHHHHhhchhhHHHHHHhh
Q 001139 155 LMRSLQQVGCMHVLDMYCKG 174 (1143)
Q Consensus 155 llrcL~~LG~~~~l~~~~~~ 174 (1143)
+-.++..+|.++....+.+.
T Consensus 157 la~~~~~~g~~~~A~~~~~~ 176 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAK 176 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 77889999998877555543
No 57
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=83.84 E-value=5.5 Score=41.67 Aligned_cols=56 Identities=9% Similarity=-0.009 Sum_probs=42.9
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhH
Q 001139 88 LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHV 167 (1143)
Q Consensus 88 l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~ 167 (1143)
+-..+..|...|++++|+.+|+..++..|. +......+..|+..+|.++.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~------------------------------~~~~~~~l~~~~~~~~~~~~ 55 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN------------------------------SPYIYNRRAVCYYELAKYDL 55 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC------------------------------CSTTHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------------------------------cHHHHHHHHHHHHHHhhHHH
Confidence 345677888999999999999999987665 12345667779999999887
Q ss_pred HHHHHh
Q 001139 168 LDMYCK 173 (1143)
Q Consensus 168 l~~~~~ 173 (1143)
...+.+
T Consensus 56 A~~~~~ 61 (272)
T 3u4t_A 56 AQKDIE 61 (272)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765554
No 58
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=83.18 E-value=83 Score=41.79 Aligned_cols=288 Identities=12% Similarity=0.028 Sum_probs=148.7
Q ss_pred CHHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc----cchh
Q 001139 14 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS----HKLS 89 (1143)
Q Consensus 14 d~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~----~~l~ 89 (1143)
|...+|..|..-+.|..|.-..|..- ...+.+...+.+++..|.++-+... ...-
T Consensus 1051 d~~eIA~Iai~lglyEEAf~IYkKa~---------------------~~~~A~~VLie~i~nldrAiE~Aervn~p~vWs 1109 (1630)
T 1xi4_A 1051 DAPDIANIAISNELFEEAFAIFRKFD---------------------VNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWS 1109 (1630)
T ss_pred cHHHHHHHHHhCCCHHHHHHHHHHcC---------------------CHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHH
Confidence 34567888888888888877776420 0111122223344444444444321 1123
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHHH
Q 001139 90 SQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLD 169 (1143)
Q Consensus 90 ~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~ 169 (1143)
..+..++..|+|.+|..+|+.+ . +.+.+..+..|+..+|.|..+-
T Consensus 1110 qLAKAql~~G~~kEAIdsYiKA--d---------------------------------D~say~eVa~~~~~lGkyEEAI 1154 (1630)
T 1xi4_A 1110 QLAKAQLQKGMVKEAIDSYIKA--D---------------------------------DPSSYMEVVQAANTSGNWEELV 1154 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHhc--C---------------------------------ChHHHHHHHHHHHHcCCHHHHH
Confidence 5677899999999999999775 1 1234567899999999999887
Q ss_pred HHHhh-hccccCCCCCCcchhHHHHHHHHcCCCCCCCcccCCCCCCCCCCCccchhhhhHHHHHHHHhcCChHHHHHHHH
Q 001139 170 MYCKG-LTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRKLK 248 (1143)
Q Consensus 170 ~~~~~-l~~~~~~~~~~~~~~~~~~eaAWrl~~Wd~~~~~~~~~~~~~~~~~~~~f~~~l~~~L~al~~~d~~~~~~~l~ 248 (1143)
.|.+. ..... .+.+..--+.+-.++++++.+..+. +. +....+. .-+......|+++++...-.
T Consensus 1155 eyL~mArk~~~-----e~~Idt~LafaYAKl~rleele~fI--~~-----~n~ad~~---~iGd~le~eg~YeeA~~~Y~ 1219 (1630)
T 1xi4_A 1155 KYLQMARKKAR-----ESYVETELIFALAKTNRLAELEEFI--NG-----PNNAHIQ---QVGDRCYDEKMYDAAKLLYN 1219 (1630)
T ss_pred HHHHHHHhhcc-----cccccHHHHHHHHhhcCHHHHHHHH--hC-----CCHHHHH---HHHHHHHhcCCHHHHHHHHH
Confidence 77642 22111 1111111234445567777654432 11 1112222 12344556677777766665
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccccccccCCCCcccchhhhHHHHHHHHH
Q 001139 249 HSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSSI 328 (1143)
Q Consensus 249 ~aR~~l~~~Ls~~~~ES~~~~y~~l~~Lq~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~r 328 (1143)
+| .-|.++=.+ +-.+.+++++++.-.+. . =.+.|...
T Consensus 1220 kA-------------~ny~rLA~t---LvkLge~q~AIEaarKA----------------~-----------n~~aWkev 1256 (1630)
T 1xi4_A 1220 NV-------------SNFGRLAST---LVHLGEYQAAVDGARKA----------------N-----------STRTWKEV 1256 (1630)
T ss_pred hh-------------hHHHHHHHH---HHHhCCHHHHHHHHHHh----------------C-----------CHHHHHHH
Confidence 53 123222222 33346677777632110 0 01467655
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCC-CCCC-Cch-----h
Q 001139 329 LKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGP-GDQC-STV-----Y 401 (1143)
Q Consensus 329 l~~~~~~~~~~E~iL~~R~~ll~~l~~~~~~~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~-~~~~-~~~-----~ 401 (1143)
-..|-..-++-. .+...+.+.-. .+..-..++.-.+.|+++.|.+.+.+..+++++- +-.. .+. .
T Consensus 1257 ~~acve~~Ef~L----A~~cgl~Iiv~----~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1257 CFACVDGKEFRL----AQMCGLHIVVH----ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHHHhhhhHHHH----HHHHHHhhhcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCC
Confidence 443322222111 12222222111 1223345666788999999999886665443210 0000 000 0
Q ss_pred hhHHHHHHHHHHHcCChHHHHH
Q 001139 402 WLGRLEEAKLLRAQGQHEMAIN 423 (1143)
Q Consensus 402 ~~~~lE~Ak~lW~~Ge~~~Ai~ 423 (1143)
+.-.+|.++++|.+++...-|+
T Consensus 1329 peklmEhlk~f~~rini~k~~r 1350 (1630)
T 1xi4_A 1329 PQKMREHLELFWSRVNIPKVLR 1350 (1630)
T ss_pred HHHHHHHHHHHHHhcccchHhH
Confidence 1124799999999988655444
No 59
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=82.05 E-value=7.9 Score=38.75 Aligned_cols=115 Identities=12% Similarity=0.029 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhC-CChhhHhhcccc-------c
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQI-NEPDSLYGIIQS-------H 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L-~epD~~~Gi~~~-------~ 86 (1143)
+..+|.+-...|-|..|+-+++..+... +......-.|..+|... ++++.+..+... +
T Consensus 45 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 110 (225)
T 2vq2_A 45 WLVRAEIYQYLKVNDKAQESFRQALSIK--------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYP 110 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCS
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhC--------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCc
Confidence 3457888889999999999998765421 11244566788999999 999887766431 1
Q ss_pred ----chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhh
Q 001139 87 ----KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQV 162 (1143)
Q Consensus 87 ----~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~L 162 (1143)
.....+.-|...|++++|+.+|+..++..|. +......+..++..+
T Consensus 111 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------------------------~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 111 TPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ------------------------------FPPAFKELARTKMLA 160 (225)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------------------------------CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------------------CchHHHHHHHHHHHc
Confidence 1245677899999999999999999887554 123456777888888
Q ss_pred chhhHHHHHHh
Q 001139 163 GCMHVLDMYCK 173 (1143)
Q Consensus 163 G~~~~l~~~~~ 173 (1143)
|.++....+.+
T Consensus 161 ~~~~~A~~~~~ 171 (225)
T 2vq2_A 161 GQLGDADYYFK 171 (225)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 88776655443
No 60
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=81.82 E-value=4.7 Score=37.57 Aligned_cols=89 Identities=7% Similarity=-0.005 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
+..+|.+..+-|-|..|+-+++..++-. | .....+.-|-.+|..+++.|.+.-.... +
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~--------p------~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~ 76 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD--------P------SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR 76 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C------CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence 3468899999999999999999876431 1 2345566788999999999987655321 1
Q ss_pred --------chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 87 --------KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 87 --------~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
.+......|+..|++++|+.+|+.++...|+
T Consensus 77 ~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 77 ADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 1234567899999999999999999886543
No 61
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=81.72 E-value=2.5 Score=39.64 Aligned_cols=54 Identities=15% Similarity=0.160 Sum_probs=43.4
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHH
Q 001139 89 SSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVL 168 (1143)
Q Consensus 89 ~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l 168 (1143)
..+...|-+.|+|++|+.+|+.+++.+|. +...+..+-.|+..+|.++..
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~p~------------------------------~~~~~~~~~~~~~~~~~~~~A 66 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPE------------------------------NAILYSNRAACLTKLMEFQRA 66 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------------------CHHHHHHHhhHHHhhccHHHH
Confidence 35677899999999999999999998775 235567788899999998876
Q ss_pred HHHH
Q 001139 169 DMYC 172 (1143)
Q Consensus 169 ~~~~ 172 (1143)
..+.
T Consensus 67 ~~~~ 70 (126)
T 4gco_A 67 LDDC 70 (126)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 62
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=81.11 E-value=3.5 Score=38.14 Aligned_cols=90 Identities=12% Similarity=0.044 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c--
Q 001139 14 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H-- 86 (1143)
Q Consensus 14 d~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~-- 86 (1143)
++..+|.+..+-|-|..|+-+++..+... | ......-.|-.+|..+++++.+...... +
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------P------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 84 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE--------P------EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD 84 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------C------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 45678999999999999999999876432 1 2345566799999999999988777542 1
Q ss_pred --chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 87 --KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 87 --~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
........|...|++++|+.+|+..++..|.
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 85 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 1346777899999999999999999987665
No 63
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=81.08 E-value=5.4 Score=36.82 Aligned_cols=90 Identities=3% Similarity=-0.085 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c--
Q 001139 14 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H-- 86 (1143)
Q Consensus 14 d~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~-- 86 (1143)
.+..+|......|.|..|+-+++..+... +..+...-.|..+|..+++.|.+.-.... +
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 76 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRN--------------PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 76 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhC--------------cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence 35678999999999999999999866431 12345667789999999999987666431 1
Q ss_pred --chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 87 --KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 87 --~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
.......-|...|++++|+.+|+.++...|+
T Consensus 77 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 77 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 2346778899999999999999999998876
No 64
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=80.98 E-value=8.8 Score=40.04 Aligned_cols=115 Identities=15% Similarity=0.091 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-------cc
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-------HK 87 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-------~~ 87 (1143)
....|......|-|..|+-+++..++.. | ..+...-.|..+|..+++++.+.-.... +.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~--------p------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 71 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK--------Y------NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATK 71 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT--------C------CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC--------C------CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchh
Confidence 3467889999999999999999865421 1 1233456688899999999887665421 11
Q ss_pred -----hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhh
Q 001139 88 -----LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQV 162 (1143)
Q Consensus 88 -----l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~L 162 (1143)
......-|...|++++|+.+|+.++...|. .......+..++..+
T Consensus 72 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~------------------------------~~~~~~~l~~~~~~~ 121 (272)
T 3u4t_A 72 AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT------------------------------RLDMYGQIGSYFYNK 121 (272)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------------------------------CTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc------------------------------cHHHHHHHHHHHHHc
Confidence 246788899999999999999999987665 124456777888888
Q ss_pred chhhHHHHHHh
Q 001139 163 GCMHVLDMYCK 173 (1143)
Q Consensus 163 G~~~~l~~~~~ 173 (1143)
|.++....+.+
T Consensus 122 ~~~~~A~~~~~ 132 (272)
T 3u4t_A 122 GNFPLAIQYME 132 (272)
T ss_dssp TCHHHHHHHHG
T ss_pred cCHHHHHHHHH
Confidence 98877765543
No 65
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=80.35 E-value=5.6 Score=38.76 Aligned_cols=82 Identities=11% Similarity=0.062 Sum_probs=57.1
Q ss_pred hHHHHHHHHHhhCCChhhHhhccccc--chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCC
Q 001139 61 RHIEILVSAVTQINEPDSLYGIIQSH--KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLS 138 (1143)
Q Consensus 61 ~~~e~L~~iY~~L~epD~~~Gi~~~~--~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (1143)
...+.|.++...-.-.+.+.++-... .+-.....|...|++++|+.+|+.++..+|.
T Consensus 10 ~~~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~--------------------- 68 (151)
T 3gyz_A 10 SISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY--------------------- 68 (151)
T ss_dssp HHHHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------------
T ss_pred HHHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------------
Confidence 34455666666554444444443221 2346777899999999999999999998776
Q ss_pred CCcchhhhhhcchhhhHHHHHHhhchhhHHHHHH
Q 001139 139 PSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYC 172 (1143)
Q Consensus 139 ~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~~~~ 172 (1143)
+.....++-.|+..+|.++....+.
T Consensus 69 ---------~~~~~~~lg~~~~~~g~~~~Ai~~~ 93 (151)
T 3gyz_A 69 ---------NVDYIMGLAAIYQIKEQFQQAADLY 93 (151)
T ss_dssp ---------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHHHHccHHHHHHHH
Confidence 2355678889999999988765544
No 66
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=79.71 E-value=9.5 Score=35.92 Aligned_cols=87 Identities=7% Similarity=-0.116 Sum_probs=68.0
Q ss_pred HHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c----c
Q 001139 17 RVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H----K 87 (1143)
Q Consensus 17 ~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~----~ 87 (1143)
.+|.+..+-|-|..|+-+++..+... | ..+...-.|-.+|..++++|.+...... + .
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~--------p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 88 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLD--------H------YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRF 88 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhC--------C------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHH
Confidence 47888899999999999998765431 1 2345666788999999999988776532 1 1
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 88 LSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 88 l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
.-....-|...|++++|+.+|+..+...|+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 346778899999999999999999998775
No 67
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=79.14 E-value=8.1 Score=33.90 Aligned_cols=89 Identities=11% Similarity=0.017 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
+..+|......|-|..|+-+++..+... +..+...-.+..+|...++.+.+.-.... +
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 72 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD--------------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG 72 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC--------------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH
Confidence 3467889999999999999999865431 11244566688889999999887766431 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 87 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 87 -~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
.......-|.+.|++++|..+|+..++..|+
T Consensus 73 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 73 KGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 1345677899999999999999999887554
No 68
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=79.06 E-value=63 Score=33.39 Aligned_cols=86 Identities=9% Similarity=-0.052 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCCchh
Q 001139 360 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAP 439 (1143)
Q Consensus 360 ~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a 439 (1143)
...+...|..+.+.|++..|...+.++..... .. +....+.+..|.+++..|+...|+..++.++...+.....+
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~---~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR--TH---EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS--CS---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--CC---cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 34466678888899999999999988754421 11 11124568899999999999999999999998776666666
Q ss_pred HHHHHhhhhHH
Q 001139 440 DVYRLVGKWLA 450 (1143)
Q Consensus 440 ~~~~llg~Wla 450 (1143)
.++..+|.-..
T Consensus 90 ~a~~~lg~~~~ 100 (261)
T 3qky_A 90 QAEYERAMCYY 100 (261)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665443
No 69
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=78.75 E-value=5.4 Score=38.37 Aligned_cols=91 Identities=12% Similarity=-0.012 Sum_probs=67.0
Q ss_pred cCHHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c-
Q 001139 13 VDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H- 86 (1143)
Q Consensus 13 Id~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~- 86 (1143)
+-+..+|+.-.+-|-|..|+-+++..++.. +..+.....|-.+|..++++|.+.-.... +
T Consensus 32 ~~~~~la~~y~~~~~~~~A~~~~~~al~~~--------------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 97 (150)
T 4ga2_A 32 IKGFYFAKLYYEAKEYDLAKKYICTYINVQ--------------ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT 97 (150)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC
Confidence 345678999999999999999999876431 12355677789999999999987776532 1
Q ss_pred ---chhhHHHHHHhhCCHHHHHHH-HHHHHhhhhh
Q 001139 87 ---KLSSQIVTLEHEGNWSKALEY-YELQVRSDVM 117 (1143)
Q Consensus 87 ---~l~~~i~~yE~~g~w~~Al~~-Ye~~l~~~~~ 117 (1143)
.......-|.+.|++++|..+ ++.+++.+|+
T Consensus 98 ~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~ 132 (150)
T 4ga2_A 98 QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG 132 (150)
T ss_dssp CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC
Confidence 134566678899999877765 4888887665
No 70
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=77.65 E-value=9.3 Score=38.20 Aligned_cols=98 Identities=6% Similarity=-0.144 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcC--C-----CcchHHHHHHHHHhhCCChhhHhhcccc--
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHL--E-----TLPRHIEILVSAVTQINEPDSLYGIIQS-- 85 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~e~L~~iY~~L~epD~~~Gi~~~-- 85 (1143)
+..+|.....-+-|..|+-+++..+.... ..++.... . ........|-.+|..+++.+.+.-....
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFI-----HTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTT-----TCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHh-----cccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34678888999999999999987654211 01110000 0 0014455688889999998887665431
Q ss_pred ---c----chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 86 ---H----KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 86 ---~----~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
+ .+-....-|...|++++|+.+|+.+++..|+
T Consensus 116 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 154 (198)
T 2fbn_A 116 KIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 1 2345777899999999999999999987665
No 71
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=77.60 E-value=8.7 Score=34.48 Aligned_cols=88 Identities=10% Similarity=0.047 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
+..+|......|-|..|+-+++..+... | ..+...-.|..+|...++.+.+.-.... +
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 72 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD--------P------TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR 72 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC--------C------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc
Confidence 3568889999999999999999865431 1 1244566788899999999887665431 1
Q ss_pred --------chhhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 001139 87 --------KLSSQIVTLEHEGNWSKALEYYELQVRSDV 116 (1143)
Q Consensus 87 --------~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~ 116 (1143)
........|.+.|++++|..+|+..+...|
T Consensus 73 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 123456789999999999999999988644
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=77.49 E-value=3.6 Score=48.28 Aligned_cols=88 Identities=13% Similarity=0.079 Sum_probs=62.8
Q ss_pred HHHHHHHHHhchh-HHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 16 LRVAKSAVICGSY-FTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 16 ~~lA~aA~~C~ay-~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
..+|.+....+-| ..|+-+++..+... +........|-.+|...++.|.+.-.... +
T Consensus 106 ~~lg~~~~~~g~~~~~A~~~~~~al~~~--------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 171 (474)
T 4abn_A 106 MLKGKALNVTPDYSPEAEVLLSKAVKLE--------------PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKV 171 (474)
T ss_dssp HHHHHHHTSSSSCCHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHH
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhhC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHH
Confidence 4677788888888 88888888765431 12345566788888888888887766431 1
Q ss_pred chhhHHHHHHhh---------CCHHHHHHHHHHHHhhhhh
Q 001139 87 KLSSQIVTLEHE---------GNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 87 ~l~~~i~~yE~~---------g~w~~Al~~Ye~~l~~~~~ 117 (1143)
.+.....-|... |+|++|+.+|+.+++..|+
T Consensus 172 ~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 211 (474)
T 4abn_A 172 SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL 211 (474)
T ss_dssp HHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC
Confidence 123455667777 9999999999999887665
No 73
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=77.42 E-value=8.4 Score=46.01 Aligned_cols=112 Identities=15% Similarity=0.040 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
+..+|.+..+-|.|..|+-+++..++.. +......-.|-.+|...++.|.+.-.... +
T Consensus 26 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 91 (568)
T 2vsy_A 26 WLMLADAELGMGDTTAGEMAVQRGLALH--------------PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHP 91 (568)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTTS--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence 4467888889999999999998765321 12345666788999999999988776532 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhh---
Q 001139 87 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQV--- 162 (1143)
Q Consensus 87 -~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~L--- 162 (1143)
.......-|...|++++|+.+|+.+++..|+ +......+..++..+
T Consensus 92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------------------------~~~~~~~l~~~~~~~~~~ 141 (568)
T 2vsy_A 92 GIALWLGHALEDAGQAEAAAAAYTRAHQLLPE------------------------------EPYITAQLLNWRRRLCDW 141 (568)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------------------CHHHHHHHHHHHHHhhcc
Confidence 2346777899999999999999999987665 224456777888888
Q ss_pred chhhHHHH
Q 001139 163 GCMHVLDM 170 (1143)
Q Consensus 163 G~~~~l~~ 170 (1143)
|..+....
T Consensus 142 g~~~~A~~ 149 (568)
T 2vsy_A 142 RALDVLSA 149 (568)
T ss_dssp TTHHHHHH
T ss_pred ccHHHHHH
Confidence 66554433
No 74
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=77.37 E-value=32 Score=34.13 Aligned_cols=156 Identities=7% Similarity=-0.095 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
+..+|.....-|.|..|+-+++..++ ..+...-.|..+|...++.+.+.-.... +
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~-----------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 71 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQD-----------------PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA 71 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSS-----------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcC-----------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 45678888999999999999886420 1244566788999999999987766431 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchh
Q 001139 87 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 165 (1143)
Q Consensus 87 -~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~ 165 (1143)
.......-|...|++++|+.+|+.+++..|........ .......| .....+..+-.|+..+|.+
T Consensus 72 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~-------------~~~~~~~~l~~~~~~~g~~ 137 (213)
T 1hh8_A 72 VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK-ILGLQFKL-------------FACEVLYNIAFMYAKKEEW 137 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECG-GGTBCCEE-------------EHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHH-HhccccCc-------------cchHHHHHHHHHHHHccCH
Confidence 13457788999999999999999999876641100000 00000000 0124456777889999999
Q ss_pred hHHHHHHhhhccccCCCCCCcchhHHHHHHHHcCCCCC
Q 001139 166 HVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWD 203 (1143)
Q Consensus 166 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~eaAWrl~~Wd 203 (1143)
+....+.+....... .........+.+..++-..+.
T Consensus 138 ~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~ 173 (213)
T 1hh8_A 138 KKAEEQLALATSMKS--EPRHSKIDKAMECVWKQKLYE 173 (213)
T ss_dssp HHHHHHHHHHHTTCC--SGGGGHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHcCc--ccccchHHHHHHHHHhccccc
Confidence 888666654322221 111222334556666555554
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=75.68 E-value=16 Score=37.16 Aligned_cols=90 Identities=4% Similarity=-0.090 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
+...|.....-|-|..|+-+++..++.. | ...+...-.+-.+|..+++.+.+.-.... +
T Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~--------~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 76 (228)
T 4i17_A 10 LKNEGNDALNAKNYAVAFEKYSEYLKLT--------N-----NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA 76 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT--------T-----TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcc--------C-----CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH
Confidence 4467889999999999999999876431 0 01223344488999999999987666431 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 87 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 87 -~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
.......-|...|++++|+.+|+..+...|+
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 108 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG 108 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 2356778899999999999999999988665
No 76
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=75.34 E-value=5.4 Score=36.48 Aligned_cols=56 Identities=11% Similarity=0.174 Sum_probs=43.7
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhH
Q 001139 88 LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHV 167 (1143)
Q Consensus 88 l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~ 167 (1143)
+......|.+.|+|++|+.+|+.++...|. +......+-.|+..+|.++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------------------------------~~~~~~~~a~~~~~~~~~~~ 56 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPE------------------------------DARGYSNRAAALAKLMSFPE 56 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------------------------------ChHHHHHHHHHHHHhcCHHH
Confidence 345677889999999999999999988665 23456778889999998877
Q ss_pred HHHHHh
Q 001139 168 LDMYCK 173 (1143)
Q Consensus 168 l~~~~~ 173 (1143)
...+.+
T Consensus 57 A~~~~~ 62 (126)
T 3upv_A 57 AIADCN 62 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
No 77
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=72.81 E-value=5 Score=37.41 Aligned_cols=54 Identities=11% Similarity=0.068 Sum_probs=42.8
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHHH
Q 001139 90 SQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLD 169 (1143)
Q Consensus 90 ~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~ 169 (1143)
.....|-+.|+|++|+.+|+.+++.+|+ +...+.++-.|+..+|.++...
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p~------------------------------~~~~~~nlg~~~~~~~~~~~A~ 62 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELDPS------------------------------NITFYNNKAAVYFEEKKFAECV 62 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------------------CHHHHHhHHHHHHHhhhHHHHH
Confidence 4566788999999999999999998765 2345677788999999988775
Q ss_pred HHHh
Q 001139 170 MYCK 173 (1143)
Q Consensus 170 ~~~~ 173 (1143)
.+++
T Consensus 63 ~~~~ 66 (127)
T 4gcn_A 63 QFCE 66 (127)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 78
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=72.55 E-value=11 Score=41.70 Aligned_cols=118 Identities=8% Similarity=-0.066 Sum_probs=82.5
Q ss_pred HHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcC------CCcchHHHHHHHHHhhCCChhhHhhcccc----
Q 001139 16 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHL------ETLPRHIEILVSAVTQINEPDSLYGIIQS---- 85 (1143)
Q Consensus 16 ~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~------~~~~~~~e~L~~iY~~L~epD~~~Gi~~~---- 85 (1143)
..+|.+..+-+-|..|+-+++..+..... .+++... ......+-.|-.+|..+++.+.+.-....
T Consensus 151 ~~~g~~~~~~g~~~~A~~~y~~Al~~~p~-----~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 151 KERGTVYFKEGKYKQALLQYKKIVSWLEY-----ESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTT-----CCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhhc-----cccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45788888999999999999987643211 0000000 00023455688899999999987766432
Q ss_pred -c----chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHH
Q 001139 86 -H----KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQ 160 (1143)
Q Consensus 86 -~----~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~ 160 (1143)
+ .+-....-|...|++++|+.+|+.+++..|+ +......+-.|+.
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~------------------------------~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN------------------------------NKAAKTQLAVCQQ 275 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS------------------------------CHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC------------------------------CHHHHHHHHHHHH
Confidence 1 2356788899999999999999999998765 2244567778888
Q ss_pred hhchhhHH
Q 001139 161 QVGCMHVL 168 (1143)
Q Consensus 161 ~LG~~~~l 168 (1143)
.+|.+...
T Consensus 276 ~~~~~~~a 283 (336)
T 1p5q_A 276 RIRRQLAR 283 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887755
No 79
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=72.31 E-value=1.2e+02 Score=33.34 Aligned_cols=71 Identities=8% Similarity=-0.168 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001139 359 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISEN 431 (1143)
Q Consensus 359 ~~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~ 431 (1143)
....+...+.+....|++..|...+.++..+.... ........+....|.+++..|+...|+..++..+..
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL--GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34567888999999999999999988776553211 101111234467899999999999999999876543
No 80
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=72.28 E-value=11 Score=38.15 Aligned_cols=88 Identities=17% Similarity=0.100 Sum_probs=65.9
Q ss_pred HHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHH----------------HHHHHhhCCChhhH
Q 001139 16 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEI----------------LVSAVTQINEPDSL 79 (1143)
Q Consensus 16 ~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----------------L~~iY~~L~epD~~ 79 (1143)
...|.....-|-|..|+-+++..+....+ .+...-. |-.+|...+++|.+
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 73 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALNID--------------RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKA 73 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHH--------------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHH
Confidence 45677888999999999999976643210 1122223 88899999999988
Q ss_pred hhcccc-----c----chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 80 YGIIQS-----H----KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 80 ~Gi~~~-----~----~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
.-.... + .......-|...|++++|+.+|+.+++.+|+
T Consensus 74 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~ 120 (208)
T 3urz_A 74 YLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120 (208)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 777532 1 2356778899999999999999999998775
No 81
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=71.07 E-value=11 Score=36.45 Aligned_cols=82 Identities=16% Similarity=0.051 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhCCChhhHhhcccc-----c----chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCC
Q 001139 62 HIEILVSAVTQINEPDSLYGIIQS-----H----KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGL 132 (1143)
Q Consensus 62 ~~e~L~~iY~~L~epD~~~Gi~~~-----~----~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~ 132 (1143)
.+-.+-.+|...++.+.+.-.... + .......-|.+.|+|++|+.+|+.++..+|.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--------------- 77 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK--------------- 77 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------------
Confidence 344566677777777776655431 1 1346777899999999999999999988665
Q ss_pred CCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHHHHHHh
Q 001139 133 PSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCK 173 (1143)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~~~~~ 173 (1143)
+...+..+-.|+..+|.++....+.+
T Consensus 78 ---------------~~~~~~~lg~~~~~~g~~~~A~~~~~ 103 (164)
T 3sz7_A 78 ---------------YSKAWSRLGLARFDMADYKGAKEAYE 103 (164)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------------CHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 23456677788999998877655543
No 82
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=70.60 E-value=6.9 Score=34.57 Aligned_cols=53 Identities=17% Similarity=0.031 Sum_probs=41.5
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHHH
Q 001139 90 SQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLD 169 (1143)
Q Consensus 90 ~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~ 169 (1143)
.....|...|+|++|+.+|+.+++.+|+ ....+..+-.|+..+|.++...
T Consensus 12 ~lg~~~~~~g~~~~A~~~~~~al~~~p~------------------------------~~~a~~~lg~~~~~~g~~~~A~ 61 (100)
T 3ma5_A 12 ALAQEHLKHDNASRALALFEELVETDPD------------------------------YVGTYYHLGKLYERLDRTDDAI 61 (100)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT------------------------------CTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------------------cHHHHHHHHHHHHHcCCHHHHH
Confidence 4556788899999999999999998775 2245667788999999988765
Q ss_pred HHH
Q 001139 170 MYC 172 (1143)
Q Consensus 170 ~~~ 172 (1143)
.+.
T Consensus 62 ~~~ 64 (100)
T 3ma5_A 62 DTY 64 (100)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 83
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=70.04 E-value=10 Score=43.04 Aligned_cols=114 Identities=9% Similarity=-0.059 Sum_probs=80.9
Q ss_pred HHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCC-hhhHhhcccc-----c---
Q 001139 16 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINE-PDSLYGIIQS-----H--- 86 (1143)
Q Consensus 16 ~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~e-pD~~~Gi~~~-----~--- 86 (1143)
..++.+-.+-+-|..|+-+++..+... | ........+-.+|..++. .+...-.... +
T Consensus 101 ~~lg~~~~~~g~~~~Al~~~~~al~l~--------P------~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~ 166 (382)
T 2h6f_A 101 DYFRAVLQRDERSERAFKLTRDAIELN--------A------ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY 166 (382)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhC--------c------cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH
Confidence 456666666788999999998765421 1 234556678889999996 8776655431 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchh
Q 001139 87 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 165 (1143)
Q Consensus 87 -~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~ 165 (1143)
....+..-|...|++++|+.+|+.+++.+|. +.....++-.++..+|.+
T Consensus 167 ~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~------------------------------~~~a~~~lg~~~~~~g~~ 216 (382)
T 2h6f_A 167 QVWHHRRVLVEWLRDPSQELEFIADILNQDAK------------------------------NYHAWQHRQWVIQEFKLW 216 (382)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc------------------------------CHHHHHHHHHHHHHcCCh
Confidence 2356777899999999999999999998776 234456677788888887
Q ss_pred hHHHHHHh
Q 001139 166 HVLDMYCK 173 (1143)
Q Consensus 166 ~~l~~~~~ 173 (1143)
+....+.+
T Consensus 217 ~eAl~~~~ 224 (382)
T 2h6f_A 217 DNELQYVD 224 (382)
T ss_dssp TTHHHHHH
T ss_pred HHHHHHHH
Confidence 76554443
No 84
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=69.78 E-value=14 Score=35.50 Aligned_cols=103 Identities=8% Similarity=-0.073 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCC----cCCCcchHHHHHHHHHhhCCChhhHhhcccc-----
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFS----HLETLPRHIEILVSAVTQINEPDSLYGIIQS----- 85 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~----~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~----- 85 (1143)
+...|....+.|-|..|+-+++..+..-........|.-. ..+.....+-.|..+|..+++.+.+.-....
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 3467888899999999999988766431100000011000 0011123455688899999998876655421
Q ss_pred c----chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 86 H----KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 86 ~----~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
+ .+-....-|...|+|++|..+|+.++..+|+
T Consensus 94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 1 2346788899999999999999999998776
No 85
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=69.70 E-value=6.8 Score=34.44 Aligned_cols=55 Identities=16% Similarity=0.223 Sum_probs=43.2
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHHH
Q 001139 90 SQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLD 169 (1143)
Q Consensus 90 ~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~ 169 (1143)
.....|...|+|++|+.+|+.++...|. +......+-.|+..+|.++...
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~------------------------------~~~~~~~lg~~~~~~g~~~~A~ 58 (111)
T 2l6j_A 9 EQGNSLFKQGLYREAVHCYDQLITAQPQ------------------------------NPVGYSNKAMALIKLGEYTQAI 58 (111)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC------------------------------CHHHHHHHHHHHHHhcCHHHHH
Confidence 4566788999999999999999987665 2244667788999999988876
Q ss_pred HHHhh
Q 001139 170 MYCKG 174 (1143)
Q Consensus 170 ~~~~~ 174 (1143)
.+.+.
T Consensus 59 ~~~~~ 63 (111)
T 2l6j_A 59 QMCQQ 63 (111)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 86
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=69.50 E-value=8.4 Score=35.41 Aligned_cols=55 Identities=11% Similarity=0.042 Sum_probs=42.6
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHH
Q 001139 89 SSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVL 168 (1143)
Q Consensus 89 ~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l 168 (1143)
-.....|.+.|+|++|+.+|+.++...|. +......+-.|+..+|.++..
T Consensus 13 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~------------------------------~~~~~~~l~~~~~~~~~~~~A 62 (137)
T 3q49_B 13 KEQGNRLFVGRKYPEAAACYGRAITRNPL------------------------------VAVYYTNRALCYLKMQQPEQA 62 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhhCcC------------------------------cHHHHHHHHHHHHHhcCHHHH
Confidence 45667888999999999999999987665 234567778889999988776
Q ss_pred HHHHh
Q 001139 169 DMYCK 173 (1143)
Q Consensus 169 ~~~~~ 173 (1143)
..+.+
T Consensus 63 ~~~~~ 67 (137)
T 3q49_B 63 LADCR 67 (137)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 87
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=69.04 E-value=23 Score=37.93 Aligned_cols=116 Identities=11% Similarity=0.034 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----cc--
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----HK-- 87 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~~-- 87 (1143)
...+|.++..-|-+..|+-+++..+... | ..+...-.|..+|...+++|.+..+... +.
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~--------P------~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~ 185 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLS--------N------QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR 185 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT--------T------SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhC--------C------cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH
Confidence 3468888999999999999998766432 1 2345566789999999999998877543 11
Q ss_pred --hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchh
Q 001139 88 --LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 165 (1143)
Q Consensus 88 --l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~ 165 (1143)
.-.....+...|+.++|...|+.++...|+ +.+.+..+-.++...|.+
T Consensus 186 ~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~------------------------------~~~~~~~la~~l~~~g~~ 235 (287)
T 3qou_A 186 YQGLVAQIELLXQAADTPEIQQLQQQVAENPE------------------------------DAALATQLALQLHQVGRN 235 (287)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhhcccCccHHHHHHHHhcCCc------------------------------cHHHHHHHHHHHHHcccH
Confidence 112333466778889999999999988775 235567788889999988
Q ss_pred hHHHHHHhh
Q 001139 166 HVLDMYCKG 174 (1143)
Q Consensus 166 ~~l~~~~~~ 174 (1143)
+........
T Consensus 236 ~~A~~~l~~ 244 (287)
T 3qou_A 236 EEALELLFG 244 (287)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777555443
No 88
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=68.93 E-value=16 Score=41.22 Aligned_cols=103 Identities=5% Similarity=-0.104 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCC-CC-CcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c-
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSP-DF-SHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~-~~-~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~- 86 (1143)
+..+|.+..+-+-|..|+-+.+..+............ .. .........+..|-.+|.++++.+.+...... +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 5568888999999999999998776421000000000 00 00011233455688889999999887766431 1
Q ss_pred ---chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 87 ---KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 87 ---~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
.+-....-|...|++++|+.+|+.+++..|+
T Consensus 306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~ 339 (370)
T 1ihg_A 306 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 339 (370)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 1346778899999999999999999988665
No 89
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=68.77 E-value=12 Score=44.65 Aligned_cols=83 Identities=8% Similarity=-0.097 Sum_probs=53.5
Q ss_pred chHHHHHHHHHhhCCChhhHhhcccc-----c----chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCC
Q 001139 60 PRHIEILVSAVTQINEPDSLYGIIQS-----H----KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPH 130 (1143)
Q Consensus 60 ~~~~e~L~~iY~~L~epD~~~Gi~~~-----~----~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~ 130 (1143)
......|-.+|...++.+.+.-.... + .......-|...|++++|+.+|+.+++..|+
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------------- 89 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE------------- 89 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-------------
Confidence 34455677777777777776665431 1 1235666778888888888888888876554
Q ss_pred CCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHHHHHH
Q 001139 131 GLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYC 172 (1143)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~~~~ 172 (1143)
+...+..+-.|+..+|.++....+.
T Consensus 90 -----------------~~~~~~~la~~~~~~g~~~~A~~~~ 114 (568)
T 2vsy_A 90 -----------------HPGIALWLGHALEDAGQAEAAAAAY 114 (568)
T ss_dssp -----------------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------------CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1234556667777777766654443
No 90
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=67.25 E-value=10 Score=46.65 Aligned_cols=143 Identities=8% Similarity=-0.050 Sum_probs=82.6
Q ss_pred HHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c----chhhH
Q 001139 21 SAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H----KLSSQ 91 (1143)
Q Consensus 21 aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~----~l~~~ 91 (1143)
.|..-+.|..|+-+++..++..+..... ..+......-.+-.+|...++.|.+.-.... + .....
T Consensus 400 ~a~~~~~~~~A~~~~~~al~~~~~~~~~------~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 473 (681)
T 2pzi_A 400 QATVLSQPVQTLDSLRAARHGALDADGV------DFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYR 473 (681)
T ss_dssp HHTTTCCHHHHHHHHHHHHTC-------------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred hcccccCHHHHHHHHHHhhhhccccccc------ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHH
Confidence 4477788888888888765211111000 0112234455677788888888877666431 1 12456
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHHHHH
Q 001139 92 IVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMY 171 (1143)
Q Consensus 92 i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~~~ 171 (1143)
..-|...|++++|+.+|+.+++.+|+ +...+..+-.|+..+|.++. ..+
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l~P~------------------------------~~~~~~~lg~~~~~~g~~~~-~~~ 522 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDTFPG------------------------------ELAPKLALAATAELAGNTDE-HKF 522 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT------------------------------CSHHHHHHHHHHHHHTCCCT-TCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC------------------------------ChHHHHHHHHHHHHcCChHH-HHH
Confidence 67788888888888888888887665 22445666778888888766 433
Q ss_pred Hh-hhccccCCCCCCcchhHHHHHHHHcCCCCCC
Q 001139 172 CK-GLTSWKGQFQHDPEFTKLQYEAAWRTGNWDF 204 (1143)
Q Consensus 172 ~~-~l~~~~~~~~~~~~~~~~~~eaAWrl~~Wd~ 204 (1143)
.+ .+. ... . .....-....+..++|+++.
T Consensus 523 ~~~al~-~~P--~-~~~a~~~lg~~~~~~g~~~~ 552 (681)
T 2pzi_A 523 YQTVWS-TND--G-VISAAFGLARARSAEGDRVG 552 (681)
T ss_dssp HHHHHH-HCT--T-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHH-hCC--c-hHHHHHHHHHHHHHcCCHHH
Confidence 33 332 111 0 11111223456667777764
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=67.09 E-value=20 Score=31.84 Aligned_cols=89 Identities=16% Similarity=0.155 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
+..+|......+-|..|+-+++...... +..+...-.+..+|...++++.+.-+... +
T Consensus 38 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 103 (136)
T 2fo7_A 38 WYNLGNAYYKQGDYDEAIEYYQKALELD--------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA 103 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHC--------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence 3457788888899999999998765321 11234556788899999999887666431 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 87 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 87 -~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
.....+.-|...|++++|..+|+..+...|.
T Consensus 104 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 104 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 1245677899999999999999999876553
No 92
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=67.08 E-value=24 Score=31.26 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=48.1
Q ss_pred HHHHHHhhCCChhhHhhcccc-----c----chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCc
Q 001139 65 ILVSAVTQINEPDSLYGIIQS-----H----KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSV 135 (1143)
Q Consensus 65 ~L~~iY~~L~epD~~~Gi~~~-----~----~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~ 135 (1143)
.+..+|...++.+.+...... + .....+.-|...|++++|+.+|+..+...|.
T Consensus 17 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------------------ 78 (131)
T 2vyi_A 17 TEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA------------------ 78 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------------
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc------------------
Confidence 344555555555554444321 1 1234566778888888888888888876554
Q ss_pred CCCCCcchhhhhhcchhhhHHHHHHhhchhhHHHHHHh
Q 001139 136 HLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCK 173 (1143)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~~~~~ 173 (1143)
.......+..++..+|.++....+.+
T Consensus 79 ------------~~~~~~~~~~~~~~~~~~~~A~~~~~ 104 (131)
T 2vyi_A 79 ------------YSKAYGRMGLALSSLNKHVEAVAYYK 104 (131)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ------------CHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 12334556677778888777655544
No 93
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=66.74 E-value=20 Score=34.11 Aligned_cols=69 Identities=19% Similarity=0.001 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001139 357 DFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 433 (1143)
Q Consensus 357 ~~~~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~ 433 (1143)
......|...+......|++..|...+.++..+.. ....+.+..+.++...|+...|+..++..+...+
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH--------YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc--------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 33456677788899999999999999888765532 1123346788899999999999999988776543
No 94
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=66.06 E-value=40 Score=31.94 Aligned_cols=67 Identities=10% Similarity=-0.126 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC
Q 001139 360 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYES 434 (1143)
Q Consensus 360 ~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~ 434 (1143)
...|...+.++...|++..|...+.++..+... .+.+.+..+.++...|+...|+..++..+...+.
T Consensus 55 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 55 SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX--------EPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 456788899999999999999999888766321 2234577899999999999999999887765543
No 95
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=65.76 E-value=20 Score=32.12 Aligned_cols=83 Identities=10% Similarity=-0.068 Sum_probs=59.4
Q ss_pred hHHHHHHHHHhhCCChhhHhhcccc-----c----chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCC
Q 001139 61 RHIEILVSAVTQINEPDSLYGIIQS-----H----KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHG 131 (1143)
Q Consensus 61 ~~~e~L~~iY~~L~epD~~~Gi~~~-----~----~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~ 131 (1143)
..+-.+..+|...++.+.+..+... + .......-|...|++++|+.+|+.++...|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-------------- 82 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-------------- 82 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT--------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--------------
Confidence 3444577778888888877666431 1 1345677889999999999999999987554
Q ss_pred CCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHHHHHHh
Q 001139 132 LPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCK 173 (1143)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~~~~~ 173 (1143)
.......+..|+..+|.++....+.+
T Consensus 83 ----------------~~~~~~~la~~~~~~~~~~~A~~~~~ 108 (133)
T 2lni_A 83 ----------------FIKGYTRKAAALEAMKDYTKAMDVYQ 108 (133)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----------------chHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 12345667788888998887765554
No 96
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=65.75 E-value=19 Score=34.82 Aligned_cols=89 Identities=10% Similarity=0.073 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHH-HhhCCCh--hhHhhcccc-----c
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSA-VTQINEP--DSLYGIIQS-----H 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~i-Y~~L~ep--D~~~Gi~~~-----~ 86 (1143)
+..+|.+....|-|..|+-+++..+... | ..+...-.|..+ |...++. |.+...... +
T Consensus 47 ~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p------~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p 112 (177)
T 2e2e_A 47 WALLGEYYLWQNDYSNSLLAYRQALQLR--------G------ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDS 112 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH--------C------SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--------C------CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC
Confidence 4568899999999999999999866432 1 124455567777 8888996 655554321 1
Q ss_pred ----chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 87 ----KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 87 ----~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
........|...|++++|..+|+..+...|+
T Consensus 113 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 113 NEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 1345677899999999999999999987665
No 97
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=65.66 E-value=8.3 Score=36.59 Aligned_cols=56 Identities=11% Similarity=0.125 Sum_probs=40.9
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhH
Q 001139 88 LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHV 167 (1143)
Q Consensus 88 l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~ 167 (1143)
+......|...|+|++|+.+|+.+++..|. +......+..|+..+|.+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~------------------------------~~~~~~~~a~~~~~~~~~~~ 65 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPS------------------------------NAIYYGNRSLAYLRTECYGY 65 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------------------------------CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC------------------------------ChHHHHHHHHHHHHcCCHHH
Confidence 345667788899999999999998887554 22445667778888888877
Q ss_pred HHHHHh
Q 001139 168 LDMYCK 173 (1143)
Q Consensus 168 l~~~~~ 173 (1143)
...+.+
T Consensus 66 A~~~~~ 71 (166)
T 1a17_A 66 ALGDAT 71 (166)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655554
No 98
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.12 E-value=18 Score=33.30 Aligned_cols=92 Identities=11% Similarity=0.021 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
+..+|.....-+-|..|+-+++..++.. |+ ..........|..+|..+++.+.+.-.... +
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~--------~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 99 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALGLD--------AT---PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV 99 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHTSC--------CC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHc--------cc---chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCH
Confidence 4568889999999999999999765321 10 000134556688899999999987666431 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 87 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 87 -~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
.......-|.+.|++++|..+|+..+...|+
T Consensus 100 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 100 KALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 1345677899999999999999999987654
No 99
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=64.80 E-value=14 Score=35.44 Aligned_cols=54 Identities=7% Similarity=-0.131 Sum_probs=42.9
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHHH
Q 001139 90 SQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLD 169 (1143)
Q Consensus 90 ~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~ 169 (1143)
....-|...|+|++|..+|+.+++.+|+ +.+.+..+-.|+..+|.++...
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~p~------------------------------~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQER------------------------------DPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------------------CHHHHHHHHHHHHHcCchHHHH
Confidence 4567899999999999999999998776 2355677788999999988765
Q ss_pred HHHh
Q 001139 170 MYCK 173 (1143)
Q Consensus 170 ~~~~ 173 (1143)
.+.+
T Consensus 86 ~~~~ 89 (150)
T 4ga2_A 86 ECYR 89 (150)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 100
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=64.69 E-value=12 Score=39.00 Aligned_cols=111 Identities=8% Similarity=-0.098 Sum_probs=76.9
Q ss_pred HHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c----chhhHHH
Q 001139 23 VICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H----KLSSQIV 93 (1143)
Q Consensus 23 ~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~----~l~~~i~ 93 (1143)
..-+-|..|+-+++..+... + . ..+..+...-.|..+|...++.|.+...... + .....+.
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~--------~-~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 85 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASR--------A-L-TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGI 85 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSS--------C-C-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhcc--------c-c-cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 33477888999888765321 0 0 0011244566788999999999988776532 1 2346778
Q ss_pred HHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHHHHHHh
Q 001139 94 TLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCK 173 (1143)
Q Consensus 94 ~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~~~~~ 173 (1143)
-|...|+|++|+.+|+.++...|. ......++..++..+|.++....+.+
T Consensus 86 ~~~~~~~~~~A~~~~~~al~~~~~------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~ 135 (275)
T 1xnf_A 86 YLTQAGNFDAAYEAFDSVLELDPT------------------------------YNYAHLNRGIALYYGGRDKLAQDDLL 135 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT------------------------------CTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhcCcc------------------------------ccHHHHHHHHHHHHhccHHHHHHHHH
Confidence 899999999999999999987664 12446677788888888776655443
No 101
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=64.64 E-value=31 Score=35.63 Aligned_cols=89 Identities=15% Similarity=-0.009 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
+..+|.+....|-|..|+-+++..+... | ..+.....|..+|...++.|.+...... +
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 111 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAIR--------P------DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 111 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------C------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcC--------C------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc
Confidence 3467888899999999999999866431 1 2345667799999999999998877542 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 87 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 87 -~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
.....+.-|...|++++|+.+|+..+...|+
T Consensus 112 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 143 (275)
T 1xnf_A 112 YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN 143 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 2346778899999999999999999987654
No 102
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=64.32 E-value=15 Score=31.72 Aligned_cols=55 Identities=13% Similarity=0.100 Sum_probs=40.2
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHH
Q 001139 89 SSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVL 168 (1143)
Q Consensus 89 ~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l 168 (1143)
......|...|+|++|+.+|+..++..|. .......+-.++..+|.++..
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------------------------------~~~~~~~~a~~~~~~~~~~~A 59 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLDPE------------------------------ESKYWLMKGKALYNLERYEEA 59 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHCCC------------------------------CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCcC------------------------------CHHHHHHHHHHHHHccCHHHH
Confidence 45667788899999999999999887554 123455677788888887766
Q ss_pred HHHHh
Q 001139 169 DMYCK 173 (1143)
Q Consensus 169 ~~~~~ 173 (1143)
..+.+
T Consensus 60 ~~~~~ 64 (112)
T 2kck_A 60 VDCYN 64 (112)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 103
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=64.21 E-value=11 Score=32.65 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=41.2
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcc-hhhhHHHHHHhhchhhHH
Q 001139 90 SQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRK-PYKGLMRSLQQVGCMHVL 168 (1143)
Q Consensus 90 ~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gllrcL~~LG~~~~l 168 (1143)
.++..|...|+|++|+.+|+.+++..|. +.. .+..+-.|+..+|.++..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~------------------------------~~~~~~~~lg~~~~~~~~~~~A 54 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPV------------------------------GKDEAYYLMGNAYRKLGDWQKA 54 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS------------------------------THHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC------------------------------cHHHHHHHHHHHHHHcCCHHHH
Confidence 4567888999999999999999987664 223 456677788889988776
Q ss_pred HHHHh
Q 001139 169 DMYCK 173 (1143)
Q Consensus 169 ~~~~~ 173 (1143)
..+.+
T Consensus 55 ~~~~~ 59 (99)
T 2kc7_A 55 LNNYQ 59 (99)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 104
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=63.97 E-value=10 Score=34.33 Aligned_cols=55 Identities=13% Similarity=-0.101 Sum_probs=43.7
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHH
Q 001139 89 SSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVL 168 (1143)
Q Consensus 89 ~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l 168 (1143)
......|...|++++|+.+|+.+++..|+ +...+..+-.|+..+|.++..
T Consensus 31 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~------------------------------~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 31 LGLGSTFRTLGEYRKAEAVLANGVKQFPN------------------------------HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------------------chHHHHHHHHHHHHcCCHHHH
Confidence 34566789999999999999999998775 234456777899999998887
Q ss_pred HHHHh
Q 001139 169 DMYCK 173 (1143)
Q Consensus 169 ~~~~~ 173 (1143)
..+.+
T Consensus 81 ~~~~~ 85 (117)
T 3k9i_A 81 VELLL 85 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 105
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=63.73 E-value=18 Score=47.72 Aligned_cols=105 Identities=16% Similarity=0.129 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhccccc---chhhH
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSH---KLSSQ 91 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~~---~l~~~ 91 (1143)
|..+|.++.+-|.|..|+-|+++..... .+ +..-.-|...|++++.++.+.-..... .+...
T Consensus 1137 y~eVa~~~~~lGkyEEAIeyL~mArk~~------~e---------~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~i 1201 (1630)
T 1xi4_A 1137 YMEVVQAANTSGNWEELVKYLQMARKKA------RE---------SYVETELIFALAKTNRLAELEEFINGPNNAHIQQV 1201 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhc------cc---------ccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHH
Confidence 4568888888888888888888643211 00 001112888899999999877665543 45678
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHHHHH
Q 001139 92 IVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMY 171 (1143)
Q Consensus 92 i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~~~ 171 (1143)
...++.+|+|++|..+|..+- ....+.+||..+|.++.+-..
T Consensus 1202 Gd~le~eg~YeeA~~~Y~kA~--------------------------------------ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A 1202 GDRCYDEKMYDAAKLLYNNVS--------------------------------------NFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred HHHHHhcCCHHHHHHHHHhhh--------------------------------------HHHHHHHHHHHhCCHHHHHHH
Confidence 899999999999999998751 246788999999987766444
Q ss_pred H
Q 001139 172 C 172 (1143)
Q Consensus 172 ~ 172 (1143)
+
T Consensus 1244 a 1244 (1630)
T 1xi4_A 1244 A 1244 (1630)
T ss_pred H
Confidence 3
No 106
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=63.72 E-value=62 Score=28.82 Aligned_cols=83 Identities=12% Similarity=-0.003 Sum_probs=58.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCCchhHHH
Q 001139 363 LLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVY 442 (1143)
Q Consensus 363 wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a~~~ 442 (1143)
+...|....+.|++..|...+.++...... . +....+.+..+.++...|+...|+..++.++...+.....+.++
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN--G---VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGL 79 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS--S---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC--C---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHH
Confidence 445677788899999999998887654321 1 11113457789999999999999999999888766554445666
Q ss_pred HHhhhhHH
Q 001139 443 RLVGKWLA 450 (1143)
Q Consensus 443 ~llg~Wla 450 (1143)
..+|....
T Consensus 80 ~~la~~~~ 87 (129)
T 2xev_A 80 LKLGLSQY 87 (129)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665443
No 107
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=63.31 E-value=44 Score=29.84 Aligned_cols=70 Identities=14% Similarity=0.086 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC
Q 001139 361 QHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESN 435 (1143)
Q Consensus 361 ~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~ 435 (1143)
..|...+.+..+.|++..|...+.++...... . +....+.+..|.++...|+...|+..++.++...+..
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~--~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPT--H---DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--S---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC--C---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 44666788888999999999998887654321 1 1112345778999999999999999999988766543
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=63.28 E-value=64 Score=31.17 Aligned_cols=116 Identities=9% Similarity=0.004 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhccccc-ch--hhH
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSH-KL--SSQ 91 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~~-~l--~~~ 91 (1143)
...+|....+-|-|..|+-+++..+... +..+...-.|-.+|...+++|.+......- .. ...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~--------------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 74 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL--------------QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNS 74 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH--------------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChH
Confidence 4578888999999999999998765432 123455667889999999999887765421 00 110
Q ss_pred -----H-HHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchh
Q 001139 92 -----I-VTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 165 (1143)
Q Consensus 92 -----i-~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~ 165 (1143)
. ..+...+...+|+.+|+.++...|+ +.+.+..+-.++...|.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~------------------------------~~~~~~~la~~~~~~g~~ 124 (176)
T 2r5s_A 75 YKSLIAKLELHQQAAESPELKRLEQELAANPD------------------------------NFELACELAVQYNQVGRD 124 (176)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT------------------------------CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHhCCC------------------------------CHHHHHHHHHHHHHcccH
Confidence 0 1112223334578899999887665 234566777888889988
Q ss_pred hHHHHHHhh
Q 001139 166 HVLDMYCKG 174 (1143)
Q Consensus 166 ~~l~~~~~~ 174 (1143)
+....+.+.
T Consensus 125 ~~A~~~~~~ 133 (176)
T 2r5s_A 125 EEALELLWN 133 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776555443
No 109
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=62.85 E-value=28 Score=40.31 Aligned_cols=119 Identities=8% Similarity=-0.056 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcC------CCcchHHHHHHHHHhhCCChhhHhhcccc---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHL------ETLPRHIEILVSAVTQINEPDSLYGIIQS--- 85 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~------~~~~~~~e~L~~iY~~L~epD~~~Gi~~~--- 85 (1143)
+..+|.+..+-+-|..|+-+++..+..... .+.+... ......+-.|-.+|.++++.+.+.-....
T Consensus 271 ~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~-----~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEM-----EYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTT-----CCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhcc-----cccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 345788888999999999999877643211 0000000 00023445678889999999987666431
Q ss_pred --c----chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHH
Q 001139 86 --H----KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSL 159 (1143)
Q Consensus 86 --~----~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL 159 (1143)
+ .+-.+..-|.+.|+|++|+.+|+.+++..|+ +...+..+-.|+
T Consensus 346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~------------------------------~~~a~~~l~~~~ 395 (457)
T 1kt0_A 346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ------------------------------NKAARLQISMCQ 395 (457)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----------------------------------CHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------------------------------CHHHHHHHHHHH
Confidence 1 2346778899999999999999999998765 224456777888
Q ss_pred HhhchhhHH
Q 001139 160 QQVGCMHVL 168 (1143)
Q Consensus 160 ~~LG~~~~l 168 (1143)
..+|.+...
T Consensus 396 ~~~~~~~~a 404 (457)
T 1kt0_A 396 KKAKEHNER 404 (457)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888876654
No 110
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=62.72 E-value=19 Score=38.50 Aligned_cols=89 Identities=3% Similarity=-0.096 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
+..+|.+..+-|-|..|+-+++..+... +..+.....|-.+|..+++.|.+...... +
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 72 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRN--------------PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence 3467888999999999999999766431 12355667799999999999988776431 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 87 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 87 -~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
.......-|...|+|++|+.+|+.++...|+
T Consensus 73 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 104 (281)
T 2c2l_A 73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 2346778899999999999999999998886
No 111
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=62.63 E-value=18 Score=44.38 Aligned_cols=114 Identities=14% Similarity=-0.030 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
+..+|.+...-|-|..|+-+++..+... | ......-.+-.+|..+++.|.+...... +
T Consensus 436 ~~~~a~~~~~~g~~~~A~~~~~~al~~~--------p------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 501 (681)
T 2pzi_A 436 PLMEVRALLDLGDVAKATRKLDDLAERV--------G------WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGEL 501 (681)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHH--------C------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCS
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccC--------c------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 4467888889999999999998766432 1 2244566688899999999988776532 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchh
Q 001139 87 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 165 (1143)
Q Consensus 87 -~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~ 165 (1143)
.......-|+..|+|++ +.+|+.+++.+|+ +...+.++-.++..+|.+
T Consensus 502 ~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~------------------------------~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 502 APKLALAATAELAGNTDE-HKFYQTVWSTNDG------------------------------VISAAFGLARARSAEGDR 550 (681)
T ss_dssp HHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc------------------------------hHHHHHHHHHHHHHcCCH
Confidence 13467778999999999 9999999998775 234567888899999998
Q ss_pred hHHHHHHh
Q 001139 166 HVLDMYCK 173 (1143)
Q Consensus 166 ~~l~~~~~ 173 (1143)
+.+..+.+
T Consensus 551 ~~A~~~~~ 558 (681)
T 2pzi_A 551 VGAVRTLD 558 (681)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77655443
No 112
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=62.47 E-value=15 Score=42.87 Aligned_cols=113 Identities=6% Similarity=-0.165 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhC---------CChhhHhhcccc
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQI---------NEPDSLYGIIQS 85 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L---------~epD~~~Gi~~~ 85 (1143)
+..+|.+....|-|..|+-+++..++.. | . ...+..|-.+|..+ ++.|.+.-....
T Consensus 140 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p------~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~ 204 (474)
T 4abn_A 140 WNQLGEVYWKKGDVTSAHTCFSGALTHC--------K------N-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKL 204 (474)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTTC--------C------C-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC--------C------C-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHH
Confidence 3568889999999999999999765321 1 1 35667788899998 777776665431
Q ss_pred -----c----chhhHHHHHHhh--------CCHHHHHHHHHHHHhhhh---hcccCCCCCCCCCCCCCCcCCCCCcchhh
Q 001139 86 -----H----KLSSQIVTLEHE--------GNWSKALEYYELQVRSDV---MLQMDGNSGALSPHGLPSVHLSPSTSENE 145 (1143)
Q Consensus 86 -----~----~l~~~i~~yE~~--------g~w~~Al~~Ye~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (1143)
+ .......-|... |++++|+.+|+.+++.+| .
T Consensus 205 al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~---------------------------- 256 (474)
T 4abn_A 205 AVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS---------------------------- 256 (474)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG----------------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc----------------------------
Confidence 1 134566677777 999999999999999876 3
Q ss_pred hhhcchhhhHHHHHHhhchhhHHHHHH
Q 001139 146 MMQRKPYKGLMRSLQQVGCMHVLDMYC 172 (1143)
Q Consensus 146 ~~~~~~~~gllrcL~~LG~~~~l~~~~ 172 (1143)
+...+..+-.++..+|.++.+..+.
T Consensus 257 --~~~~~~~lg~~~~~~g~~~~A~~~~ 281 (474)
T 4abn_A 257 --NPDLHLNRATLHKYEESYGEALEGF 281 (474)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2345667778888889877665443
No 113
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=62.38 E-value=26 Score=36.91 Aligned_cols=131 Identities=11% Similarity=0.051 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc---------
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS--------- 85 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~--------- 85 (1143)
+..+|......|-|..|+-+++..+...... .+. ...........|..+|...++++.+.-....
T Consensus 72 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (311)
T 3nf1_A 72 LNILALVYRDQNKYKDAANLLNDALAIREKT--LGK----DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 145 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--HCT----TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH--hCC----CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhc
Confidence 4568888889999999999999876432110 000 0011234556788899999999887666421
Q ss_pred ----c----chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHH
Q 001139 86 ----H----KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMR 157 (1143)
Q Consensus 86 ----~----~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllr 157 (1143)
+ .......-|...|+|++|+.+|+..+........ + + .. ........+.+
T Consensus 146 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~-----------~------~~----~~~~~~~~la~ 203 (311)
T 3nf1_A 146 GKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG-P-----------D------DP----NVAKTKNNLAS 203 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC-T-----------T------CH----HHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC-C-----------C------CH----HHHHHHHHHHH
Confidence 1 1245677899999999999999999876332000 0 0 00 02344566778
Q ss_pred HHHhhchhhHHHHHHh
Q 001139 158 SLQQVGCMHVLDMYCK 173 (1143)
Q Consensus 158 cL~~LG~~~~l~~~~~ 173 (1143)
++..+|.++....+.+
T Consensus 204 ~~~~~g~~~~A~~~~~ 219 (311)
T 3nf1_A 204 CYLKQGKFKQAETLYK 219 (311)
T ss_dssp HHHHHTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 8888888877665544
No 114
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=62.24 E-value=27 Score=35.95 Aligned_cols=131 Identities=11% Similarity=0.037 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc---------
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS--------- 85 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~--------- 85 (1143)
+..+|.+-...|-|..|+-+++..++..... .+. ........+..|-.+|...++.|.+......
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 46 LNILALVYRDQNKYKEAAHLLNDALAIREKT--LGK----DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCT----TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHH--cCC----cchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 3468888888999999999998765432110 000 0111234566788899999999887766431
Q ss_pred ----c----chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHH
Q 001139 86 ----H----KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMR 157 (1143)
Q Consensus 86 ----~----~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllr 157 (1143)
+ .......-|...|++++|+.+|+..+....... ++ + .. ........+.+
T Consensus 120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~-----------~------~~----~~~~~~~~la~ 177 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRL-GP-----------D------DP----NVAKTKNNLAS 177 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHS-CT-----------T------CH----HHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CC-----------C------CH----HHHHHHHHHHH
Confidence 1 123567789999999999999999987632200 00 0 00 02344567778
Q ss_pred HHHhhchhhHHHHHHh
Q 001139 158 SLQQVGCMHVLDMYCK 173 (1143)
Q Consensus 158 cL~~LG~~~~l~~~~~ 173 (1143)
++...|.++....+.+
T Consensus 178 ~~~~~g~~~~A~~~~~ 193 (283)
T 3edt_B 178 CYLKQGKYQDAETLYK 193 (283)
T ss_dssp HHHHHTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 8888888877655543
No 115
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=61.57 E-value=1.6e+02 Score=30.68 Aligned_cols=71 Identities=8% Similarity=-0.147 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001139 359 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISEN 431 (1143)
Q Consensus 359 ~~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~ 431 (1143)
....+...+.+....|++..|...+.++..+.... ...+....+....|.++...|+...|+..++..+..
T Consensus 222 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 222 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 44577888899999999999999887776543211 111112234467899999999999999998876543
No 116
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=61.54 E-value=37 Score=29.30 Aligned_cols=78 Identities=10% Similarity=-0.077 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCCchh
Q 001139 360 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAP 439 (1143)
Q Consensus 360 ~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a 439 (1143)
...|...+..+...|++..|...+.++..+... ...+.+..|.+++..|+...|+..++..+...+. .+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~ 72 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH--------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD---WG 72 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc---cH
Confidence 345677788889999999999998887654311 1234577899999999999999999888765432 23
Q ss_pred HHHHHhhhh
Q 001139 440 DVYRLVGKW 448 (1143)
Q Consensus 440 ~~~~llg~W 448 (1143)
.++..+|..
T Consensus 73 ~~~~~~a~~ 81 (118)
T 1elw_A 73 KGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 117
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=61.46 E-value=58 Score=30.21 Aligned_cols=66 Identities=9% Similarity=-0.196 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001139 360 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 433 (1143)
Q Consensus 360 ~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~ 433 (1143)
...|...+.+....|+++.|...+.++..+... .+...+..+.++...|+...|+..++..+...+
T Consensus 52 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 52 ARYFLGLGACRQSLGLYEQALQSYSYGALMDIN--------EPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 456888889999999999999998887665321 123457789999999999999999987766544
No 118
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=60.68 E-value=15 Score=35.15 Aligned_cols=71 Identities=14% Similarity=0.175 Sum_probs=43.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchh---hhhhcchhhhHHHHHHhhch
Q 001139 88 LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSEN---EMMQRKPYKGLMRSLQQVGC 164 (1143)
Q Consensus 88 l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~gllrcL~~LG~ 164 (1143)
+......|-+.|+|++|+.+|+.++...+...... .+.+.+. .......+..+-.|+..+|.
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~nla~~~~~~~~ 78 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILRE---------------KPGEPEWVELDRKNIPLYANMSQCYLNIGD 78 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTS---------------CTTSHHHHHHHHTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 45677889999999999999999998633211000 0000000 00123455667788888888
Q ss_pred hhHHHHHHh
Q 001139 165 MHVLDMYCK 173 (1143)
Q Consensus 165 ~~~l~~~~~ 173 (1143)
++....+++
T Consensus 79 ~~~A~~~~~ 87 (162)
T 3rkv_A 79 LHEAEETSS 87 (162)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777655543
No 119
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=60.29 E-value=36 Score=36.42 Aligned_cols=95 Identities=11% Similarity=-0.003 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc---------
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS--------- 85 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~--------- 85 (1143)
|...+..-...|.|..|+-+++..++-... .+++ ......+.-|-.+|..++++|.+......
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~-----~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g 111 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKK---AGNE-----DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG 111 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHH---TTCH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---hCCH-----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC
Confidence 777788889999999999999887653211 0110 01123455678888888888876555321
Q ss_pred ------cchhhHHHHHHhh-CCHHHHHHHHHHHHhhhhh
Q 001139 86 ------HKLSSQIVTLEHE-GNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 86 ------~~l~~~i~~yE~~-g~w~~Al~~Ye~~l~~~~~ 117 (1143)
..+.....-|+.. |++++|+.+|+.++...|.
T Consensus 112 ~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~ 150 (292)
T 1qqe_A 112 QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ 150 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Confidence 1234567788886 9999999999999987665
No 120
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=59.91 E-value=2.2e+02 Score=31.88 Aligned_cols=29 Identities=14% Similarity=-0.080 Sum_probs=23.7
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 89 SSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 89 ~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
.....-|...|+.++|+.+|+.+++..+.
T Consensus 55 n~Lg~~~~~~G~~~eAl~~~~kAl~~~~~ 83 (472)
T 4g1t_A 55 NLLAYLKHLKGQNEAALECLRKAEELIQQ 83 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 45677888999999999999999876443
No 121
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=59.63 E-value=15 Score=30.71 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=40.4
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHHH
Q 001139 90 SQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLD 169 (1143)
Q Consensus 90 ~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~ 169 (1143)
.....|...|+|++|+.+|+.+++..|. +......+-.|+..+|.++...
T Consensus 14 ~la~~~~~~~~~~~A~~~~~~a~~~~~~------------------------------~~~~~~~l~~~~~~~~~~~~A~ 63 (91)
T 1na3_A 14 NLGNAYYKQGDYDEAIEYYQKALELDPN------------------------------NAEAWYNLGNAYYKQGDYDEAI 63 (91)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCC------------------------------CHHHHHHHHHHHHHHhhHHHHH
Confidence 4566788999999999999999987654 1234556777888888877765
Q ss_pred HHHh
Q 001139 170 MYCK 173 (1143)
Q Consensus 170 ~~~~ 173 (1143)
.+.+
T Consensus 64 ~~~~ 67 (91)
T 1na3_A 64 EYYQ 67 (91)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 122
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=59.07 E-value=71 Score=27.38 Aligned_cols=67 Identities=16% Similarity=0.058 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC
Q 001139 360 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYES 434 (1143)
Q Consensus 360 ~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~ 434 (1143)
...|...+....+.|++..|.....++..+... ...+.+..+.++...|+...|+..++..+...+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ--------NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 345777889999999999999998887665321 1234577899999999999999999888765443
No 123
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=58.89 E-value=43 Score=29.18 Aligned_cols=63 Identities=21% Similarity=-0.027 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001139 360 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISE 430 (1143)
Q Consensus 360 ~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~ 430 (1143)
...|...+.+..+.|++..|...+.++..+... ...+.+..+.++...|+...|+..++..+.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD--------YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345777888899999999999998888665321 123457789999999999999998887654
No 124
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=57.82 E-value=50 Score=30.00 Aligned_cols=63 Identities=13% Similarity=-0.098 Sum_probs=48.2
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001139 363 LLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 433 (1143)
Q Consensus 363 wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~ 433 (1143)
|...+..+.+.|++..|...+.++.++.. ....+.+..+.++-..|+...|+..++..+...+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P--------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 82 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEP--------EREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45567777889999999999888766532 1223457789999999999999999988776543
No 125
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=57.78 E-value=51 Score=30.19 Aligned_cols=69 Identities=13% Similarity=0.114 Sum_probs=44.6
Q ss_pred HHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccccchhhHHHHH
Q 001139 16 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSHKLSSQIVTL 95 (1143)
Q Consensus 16 ~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~~~l~~~i~~y 95 (1143)
..+|......|-|..|+-+++..++ ++...+++.... ........-|
T Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~al~----------------------------~~~~~~~~~~~~-----~~~~~l~~~~ 59 (164)
T 3ro3_A 13 GNLGNTHYLLGNFRDAVIAHEQRLL----------------------------IAKEFGDKAAER-----IAYSNLGNAY 59 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH----------------------------HHHHHTCHHHHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH----------------------------HHHHhCCchHHH-----HHHHHHHHHH
Confidence 4566677777777777777775432 222223332221 1233566778
Q ss_pred HhhCCHHHHHHHHHHHHhhhhh
Q 001139 96 EHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 96 E~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
...|++++|+.+|+.++...+.
T Consensus 60 ~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 60 IFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHH
Confidence 8899999999999999886554
No 126
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=57.47 E-value=2.1e+02 Score=30.91 Aligned_cols=109 Identities=8% Similarity=-0.079 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC---C
Q 001139 359 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYES---N 435 (1143)
Q Consensus 359 ~~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~---~ 435 (1143)
....+...+.+....|++..|...+.++..+..... ..+....+....|.++...|+...|+..++..+..... .
T Consensus 226 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 303 (406)
T 3sf4_A 226 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK--DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDR 303 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCc--CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCc
Confidence 445778889999999999999998887765532111 11111234467899999999999999998876543221 1
Q ss_pred CchhHHHHHhhhhHHhhhcCChHHHHHHhhhhhhhcc
Q 001139 436 EEAPDVYRLVGKWLAESRSSNSRIILENYLKPAVSFS 472 (1143)
Q Consensus 436 ~~~a~~~~llg~Wlaesr~e~~~~I~~~Y~~~a~~~~ 472 (1143)
...+.++..+|...... .+.....+ |++.|+.+.
T Consensus 304 ~~~~~~~~~la~~~~~~--g~~~~A~~-~~~~al~~~ 337 (406)
T 3sf4_A 304 IGEGRACWSLGNAYTAL--GNHDQAMH-FAEKHLEIS 337 (406)
T ss_dssp HHHHHHHHHHHHHHHHH--TCHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc--CCHHHHHH-HHHHHHHHH
Confidence 12244555555544432 23333333 334465544
No 127
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=57.39 E-value=6.2 Score=45.83 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhccccc---chhh
Q 001139 14 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSH---KLSS 90 (1143)
Q Consensus 14 d~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~~---~l~~ 90 (1143)
.|..++.+|...|.|..|+-|++.-.+. .+.+.....|...|.++++.+.+.-+...+ ....
T Consensus 63 ~y~~V~~~ae~~g~~EeAi~yl~~ark~---------------~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~ 127 (449)
T 1b89_A 63 SYMEVVQAANTSGNWEELVKYLQMARKK---------------ARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQ 127 (449)
T ss_dssp -------------------------------------------------------------CHHHHTTTTTCC-------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHh---------------CccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHH
Confidence 3456677777788888888777753211 001233345888999999999888887654 4678
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHHH
Q 001139 91 QIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLD 169 (1143)
Q Consensus 91 ~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~ 169 (1143)
.+..|-++|+|++|..+|... .....+..||-.||.+..+-
T Consensus 128 IGd~~~~~g~yeeA~~~Y~~a--------------------------------------~n~~~LA~~L~~Lg~yq~AV 168 (449)
T 1b89_A 128 VGDRCYDEKMYDAAKLLYNNV--------------------------------------SNFGRLASTLVHLGEYQAAV 168 (449)
T ss_dssp ---------CTTTHHHHHHHT--------------------------------------TCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHh--------------------------------------hhHHHHHHHHHHhccHHHHH
Confidence 888999999999999999753 12468899999999977653
No 128
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=57.36 E-value=66 Score=28.57 Aligned_cols=67 Identities=21% Similarity=0.065 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001139 359 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 433 (1143)
Q Consensus 359 ~~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~ 433 (1143)
....|...+.+..+.|+++.|...+.++..+... ...+.+..+.++...|+...|+..++..+...+
T Consensus 26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 92 (117)
T 3k9i_A 26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN--------HQALRVFYAMVLYNLGRYEQGVELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4566888899999999999999999888665321 123457789999999999999999988776543
No 129
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=57.35 E-value=16 Score=32.60 Aligned_cols=53 Identities=17% Similarity=0.034 Sum_probs=38.9
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHHH
Q 001139 90 SQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLD 169 (1143)
Q Consensus 90 ~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~ 169 (1143)
.....|...|+|++|+.+|+.+++.+|. ....+..+-.|+..+|.++...
T Consensus 24 ~lg~~~~~~g~~~~A~~~~~~al~~~p~------------------------------~~~~~~~la~~~~~~g~~~~A~ 73 (115)
T 2kat_A 24 TLGKTYAEHEQFDAALPHLRAALDFDPT------------------------------YSVAWKWLGKTLQGQGDRAGAR 73 (115)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCC------------------------------cHHHHHHHHHHHHHcCCHHHHH
Confidence 4455778899999999999999887664 1234566777888888877665
Q ss_pred HHH
Q 001139 170 MYC 172 (1143)
Q Consensus 170 ~~~ 172 (1143)
.+.
T Consensus 74 ~~~ 76 (115)
T 2kat_A 74 QAW 76 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 130
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=56.49 E-value=8.8 Score=34.46 Aligned_cols=73 Identities=16% Similarity=0.151 Sum_probs=52.5
Q ss_pred cCHHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccccchhhHH
Q 001139 13 VDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSHKLSSQI 92 (1143)
Q Consensus 13 Id~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~~~l~~~i 92 (1143)
.|...||..+.+-+-|.+|..++|..+...... + . -|+.....+....
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~-----~-----~----------------------~~~~~~~i~~~L~ 53 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEG-----E-----I----------------------STIDKVSVLDYLS 53 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-----C-----C----------------------CSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhcc-----C-----C----------------------CcccHHHHHHHHH
Confidence 367789999999999999999999865432100 0 0 0221112235566
Q ss_pred HHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 93 VTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 93 ~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
..|-+.|++++|+.+|+.++...|+
T Consensus 54 ~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 54 YAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHccCHHHHHHHHHHHHhcCCC
Confidence 7888999999999999999988765
No 131
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=56.44 E-value=36 Score=35.70 Aligned_cols=109 Identities=14% Similarity=0.016 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----cC
Q 001139 360 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENY-----ES 434 (1143)
Q Consensus 360 ~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~-----~~ 434 (1143)
...+...+.+....|++..|...+.++..+.........+....+....|.+++..|+...|+..++..+... ..
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 69 ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 4456667888888999999998887765542100000112223345678999999999999999998776543 22
Q ss_pred CCchhHHHHHhhhhHHhhhcCChHHHHHHhhhhhhhc
Q 001139 435 NEEAPDVYRLVGKWLAESRSSNSRIILENYLKPAVSF 471 (1143)
Q Consensus 435 ~~~~a~~~~llg~Wlaesr~e~~~~I~~~Y~~~a~~~ 471 (1143)
....+.++..+|...... .+...-++ ++..++.+
T Consensus 149 ~~~~~~~~~~la~~~~~~--~~~~~A~~-~~~~a~~~ 182 (311)
T 3nf1_A 149 HPDVAKQLNNLALLCQNQ--GKYEEVEY-YYQRALEI 182 (311)
T ss_dssp CHHHHHHHHHHHHHHHTT--TCHHHHHH-HHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHc--CCHHHHHH-HHHHHHHH
Confidence 233455555666554432 23333333 34446544
No 132
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=55.50 E-value=71 Score=26.21 Aligned_cols=65 Identities=12% Similarity=-0.054 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 001139 360 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENY 432 (1143)
Q Consensus 360 ~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~ 432 (1143)
...|...+....+.|++..|...+.++..+... ...+.+..+.++...|+...|+..++..+...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 445677788889999999999998887655311 12345678999999999999999998877654
No 133
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=55.25 E-value=71 Score=29.13 Aligned_cols=29 Identities=17% Similarity=0.046 Sum_probs=23.8
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 89 SSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 89 ~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
.....-|...|++++|..+|+..+...+.
T Consensus 93 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 121 (164)
T 3ro3_A 93 YSLGNTYTLLQDYEKAIDYHLKHLAIAQE 121 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 35667888999999999999999876543
No 134
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=55.19 E-value=14 Score=41.00 Aligned_cols=56 Identities=9% Similarity=0.025 Sum_probs=43.8
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhH
Q 001139 88 LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHV 167 (1143)
Q Consensus 88 l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~ 167 (1143)
......-|.+.|+|++|+.+|+.+++.+|. +...+..+-.|+..+|.++.
T Consensus 233 ~~nla~~~~~~g~~~~A~~~~~~al~~~p~------------------------------~~~a~~~lg~a~~~~g~~~~ 282 (338)
T 2if4_A 233 HLNIAACLIKLKRYDEAIGHCNIVLTEEEK------------------------------NPKALFRRGKAKAELGQMDS 282 (338)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------------------CHHHHHHHHHHHHHcCCHHH
Confidence 345677889999999999999999987665 23455677788999999888
Q ss_pred HHHHHh
Q 001139 168 LDMYCK 173 (1143)
Q Consensus 168 l~~~~~ 173 (1143)
+..+.+
T Consensus 283 A~~~l~ 288 (338)
T 2if4_A 283 ARDDFR 288 (338)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766554
No 135
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=54.77 E-value=35 Score=33.81 Aligned_cols=89 Identities=11% Similarity=-0.013 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc---------
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS--------- 85 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~--------- 85 (1143)
+..+|.+..+-|-|..|+-+++..+... | ......-.|-.+|..+++.|.+.-....
T Consensus 40 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--------~------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 105 (213)
T 1hh8_A 40 CFNIGCMYTILKNMTEAEKAFTRSINRD--------K------HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ 105 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------c------cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence 3467888889999999999999866431 1 1244556788899999999887666431
Q ss_pred ----------------cchhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 86 ----------------HKLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 86 ----------------~~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
........-|.+.|++++|..+|+.++...|+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 106 LIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp EEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 11245777899999999999999999987664
No 136
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=54.50 E-value=64 Score=27.99 Aligned_cols=65 Identities=12% Similarity=-0.054 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 001139 360 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENY 432 (1143)
Q Consensus 360 ~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~ 432 (1143)
...|...+......|++..|...+.++...... .....+..|.++...|+...|+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 73 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 345677788888999999999998887654211 12344678999999999999999998887654
No 137
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=54.08 E-value=64 Score=28.33 Aligned_cols=65 Identities=14% Similarity=-0.050 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 001139 360 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENY 432 (1143)
Q Consensus 360 ~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~ 432 (1143)
...|...+......|++..|...+.++..+... .....+..|.++...|+...|+..++..+...
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 68 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT--------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVG 68 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 456778889999999999999999887655311 12345778999999999999999998876544
No 138
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=54.05 E-value=71 Score=28.08 Aligned_cols=64 Identities=16% Similarity=-0.011 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001139 360 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISEN 431 (1143)
Q Consensus 360 ~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~ 431 (1143)
...|...+.+....|++..|...+.++..+.. ....+.+..|.++...|+...|+..++..+..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDP--------TYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC--------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45677788899999999999999988766532 11234577899999999999999999877654
No 139
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=53.36 E-value=71 Score=32.64 Aligned_cols=110 Identities=14% Similarity=0.020 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----c
Q 001139 359 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENY-----E 433 (1143)
Q Consensus 359 ~~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~-----~ 433 (1143)
....|...+.+....|++..|...+.++..+.........|....+....|.+++..|+...|+..++..+... .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 45667778899999999999999988876552100001112233445778999999999999999988765442 1
Q ss_pred CCCchhHHHHHhhhhHHhhhcCChHHHHHHhhhhhhhc
Q 001139 434 SNEEAPDVYRLVGKWLAESRSSNSRIILENYLKPAVSF 471 (1143)
Q Consensus 434 ~~~~~a~~~~llg~Wlaesr~e~~~~I~~~Y~~~a~~~ 471 (1143)
..+....++..+|.-.... .+.+.-.+ ++..++.+
T Consensus 122 ~~~~~~~~~~~la~~~~~~--g~~~~A~~-~~~~al~~ 156 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQ--GKAEEVEY-YYRRALEI 156 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTT--TCHHHHHH-HHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHc--CCHHHHHH-HHHHHHHH
Confidence 1233445555555544332 23333332 34446544
No 140
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=53.22 E-value=9.7 Score=44.68 Aligned_cols=86 Identities=13% Similarity=0.014 Sum_probs=64.5
Q ss_pred HHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c----ch
Q 001139 18 VAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H----KL 88 (1143)
Q Consensus 18 lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~----~l 88 (1143)
+|.+..+-+-|..|+-+++..++.. +........|-.+|..+++.+.+.-.... + ..
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~--------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 77 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN--------------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGY 77 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC--------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3455567788999999998766431 12245667789999999999988776432 1 23
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 89 SSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 89 ~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
.....-|.+.|++++|+.+|+.+++..|+
T Consensus 78 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 106 (477)
T 1wao_1 78 YRRAASNMALGKFRAALRDYETVVKVKPH 106 (477)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 46778899999999999999999988665
No 141
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=53.20 E-value=38 Score=37.57 Aligned_cols=94 Identities=10% Similarity=0.125 Sum_probs=63.2
Q ss_pred HHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc--------c-
Q 001139 16 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS--------H- 86 (1143)
Q Consensus 16 ~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~--------~- 86 (1143)
..+|.+-...|-|..|+-|++..++-.. . .++. .......+..|-.+|..++++|.+.-.... .
T Consensus 147 ~~lg~~~~~~~~~~~A~~~~~~al~~~~-~----~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 219 (383)
T 3ulq_A 147 FKMSESYYYMKQTYFSMDYARQAYEIYK-E----HEAY--NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ 219 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-T----CSTT--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH-h----Cccc--hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence 4577777888888888888887654321 1 0000 011123455678889999999887665421 1
Q ss_pred ------chhhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 001139 87 ------KLSSQIVTLEHEGNWSKALEYYELQVRSDV 116 (1143)
Q Consensus 87 ------~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~ 116 (1143)
.+.....-|...|++++|+.+|+.++....
T Consensus 220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 255 (383)
T 3ulq_A 220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFE 255 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 234577789999999999999999988543
No 142
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=53.16 E-value=1.4e+02 Score=31.55 Aligned_cols=64 Identities=19% Similarity=-0.033 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 001139 361 QHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENY 432 (1143)
Q Consensus 361 ~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~ 432 (1143)
..++..|..+...|++..|...+.++..+... ...+.+..|.++..+|+.+.|+..++.+....
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~--------~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~ 181 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ--------NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD 181 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS--------CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc--------chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh
Confidence 45677788899999999999999888665321 22456789999999999999999998775443
No 143
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=53.05 E-value=19 Score=35.50 Aligned_cols=99 Identities=13% Similarity=0.083 Sum_probs=61.3
Q ss_pred HHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccccchhhHHHHH
Q 001139 16 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSHKLSSQIVTL 95 (1143)
Q Consensus 16 ~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~~~l~~~i~~y 95 (1143)
...|....+-|.|..|+-+.+..++-. |+. +.. + .+ +.+.+. ......+..-+
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~--------p~~------~~~-~-------a~-~~~~~~----a~a~~n~g~al 67 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEIS--------HTM------PPE-E-------AF-DHAGFD----AFCHAGLAEAL 67 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHH--------TTS------CTT-S-------CC-CHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--------CCC------cch-h-------hh-hhccch----HHHHHHHHHHH
Confidence 345677778888888888888766432 111 000 0 00 000000 00234567788
Q ss_pred HhhCCHHHHHHHHHHHHhh-------hhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchh----hhHHHHHHhhch
Q 001139 96 EHEGNWSKALEYYELQVRS-------DVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPY----KGLMRSLQQVGC 164 (1143)
Q Consensus 96 E~~g~w~~Al~~Ye~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~gllrcL~~LG~ 164 (1143)
.+.|+|++|+.+|+.++.. +|+ ....+ ...-.+|..||.
T Consensus 68 ~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd------------------------------~~~A~~~~~~~rG~aL~~lgr 117 (159)
T 2hr2_A 68 AGLRSFDEALHSADKALHYFNRRGELNQD------------------------------EGKLWISAVYSRALALDGLGR 117 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHCCTTST------------------------------HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCCHHHHHHHHHHHHHhhhccccCCCc------------------------------hHHHHHHHHHhHHHHHHHCCC
Confidence 9999999999999999987 654 22334 455578999999
Q ss_pred hhHHHHH
Q 001139 165 MHVLDMY 171 (1143)
Q Consensus 165 ~~~l~~~ 171 (1143)
++.....
T Consensus 118 ~eEAl~~ 124 (159)
T 2hr2_A 118 GAEAMPE 124 (159)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776443
No 144
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=52.59 E-value=1.9e+02 Score=28.78 Aligned_cols=99 Identities=13% Similarity=-0.020 Sum_probs=66.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCC----c
Q 001139 362 HLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNE----E 437 (1143)
Q Consensus 362 ~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~----~ 437 (1143)
.|...+.+....|++..|...+.++..+. |....+.+..|.++...|+...|+..++..+...+... .
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 115 (228)
T 4i17_A 44 TAYNCGVCADNIKKYKEAADYFDIAIKKN--------YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKL 115 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhC--------cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 34456788888999999999988876542 22224457899999999999999999998877654332 1
Q ss_pred hhHHHHHhhhhHHhhhcCChHHHHHHhhhhhhhc
Q 001139 438 APDVYRLVGKWLAESRSSNSRIILENYLKPAVSF 471 (1143)
Q Consensus 438 ~a~~~~llg~Wlaesr~e~~~~I~~~Y~~~a~~~ 471 (1143)
.+.++..+|...... .+.+.-++.| ..|+.+
T Consensus 116 ~~~~~~~~g~~~~~~--~~~~~A~~~~-~~al~~ 146 (228)
T 4i17_A 116 YAIYYLKEGQKFQQA--GNIEKAEENY-KHATDV 146 (228)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHH-HHHTTS
T ss_pred HHHHHHHHhHHHHHh--ccHHHHHHHH-HHHHhc
Confidence 235667777665442 3444444444 446543
No 145
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=51.95 E-value=25 Score=39.89 Aligned_cols=87 Identities=14% Similarity=0.136 Sum_probs=64.7
Q ss_pred HHHHHHHHhch-hHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc---------c
Q 001139 17 RVAKSAVICGS-YFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS---------H 86 (1143)
Q Consensus 17 ~lA~aA~~C~a-y~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~---------~ 86 (1143)
.+|.+-..-|- |..|+-+++..+... +........+..+|..+++++........ .
T Consensus 136 ~~g~~l~~~g~d~~eAl~~~~~al~l~--------------P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~ 201 (382)
T 2h6f_A 136 FRRVLLKSLQKDLHEEMNYITAIIEEQ--------------PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYH 201 (382)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHcccCHHHHHHHHHHHHHHC--------------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHH
Confidence 45666666776 888998888766431 12345666788899999999887666432 1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 87 KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 87 ~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
....+..-|.+.|+|++|+.+|+.+++.+|.
T Consensus 202 a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~ 232 (382)
T 2h6f_A 202 AWQHRQWVIQEFKLWDNELQYVDQLLKEDVR 232 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 2356778899999999999999999998775
No 146
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=51.86 E-value=76 Score=32.10 Aligned_cols=83 Identities=12% Similarity=-0.031 Sum_probs=60.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCCchhHH
Q 001139 362 HLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDV 441 (1143)
Q Consensus 362 ~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a~~ 441 (1143)
.+...|...-+.|+++.|...+.++...... . +....+.+..|..+...|+...|+...+.++...+.....+.+
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~--~---~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a 80 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPF--G---PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 80 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--S---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C---hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence 3555677788899999999999887654211 1 1112356788999999999999999999999877766555556
Q ss_pred HHHhhhhH
Q 001139 442 YRLVGKWL 449 (1143)
Q Consensus 442 ~~llg~Wl 449 (1143)
+..+|.-.
T Consensus 81 ~~~~g~~~ 88 (225)
T 2yhc_A 81 MYMRGLTN 88 (225)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555433
No 147
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=51.04 E-value=42 Score=35.83 Aligned_cols=51 Identities=10% Similarity=0.004 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhCCChhhHhhcccccchhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 62 HIEILVSAVTQINEPDSLYGIIQSHKLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 62 ~~e~L~~iY~~L~epD~~~Gi~~~~~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
.++--++++..+++|.....+ +.....-|.+.|++++|+.+|+.++...+.
T Consensus 59 ~~~~al~~~~~~~~~~~~a~~-----~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~ 109 (292)
T 1qqe_A 59 SFLKAADYQKKAGNEDEAGNT-----YVEAYKCFKSGGNSVNAVDSLENAIQIFTH 109 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH-----HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHH-----HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 455567788888887654332 346677899999999999999999987654
No 148
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=50.99 E-value=25 Score=37.62 Aligned_cols=55 Identities=11% Similarity=0.042 Sum_probs=42.8
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHH
Q 001139 89 SSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVL 168 (1143)
Q Consensus 89 ~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l 168 (1143)
......|...|+|++|..+|+.++...|. +...+..+-.|+..+|.++.+
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~------------------------------~~~~~~~la~~~~~~~~~~~A 57 (281)
T 2c2l_A 8 KEQGNRLFVGRKYPEAAACYGRAITRNPL------------------------------VAVYYTNRALCYLKMQQPEQA 57 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSC------------------------------CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc------------------------------cHHHHHHHHHHHHHhcCHHHH
Confidence 45677889999999999999999987664 234566777899999998876
Q ss_pred HHHHh
Q 001139 169 DMYCK 173 (1143)
Q Consensus 169 ~~~~~ 173 (1143)
..+.+
T Consensus 58 ~~~~~ 62 (281)
T 2c2l_A 58 LADCR 62 (281)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 149
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=50.52 E-value=50 Score=35.53 Aligned_cols=94 Identities=14% Similarity=-0.000 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc---------
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS--------- 85 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~--------- 85 (1143)
|..++..-...+-|..|+-+++..++-.... +.+ ......+.-+-.+|..++++|.+......
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~-----~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g 110 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANN---RSL-----FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG 110 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCH-----HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc---CCH-----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC
Confidence 5667778888888888888888765432110 000 00122344556666666666665544321
Q ss_pred ------cchhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 86 ------HKLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 86 ------~~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
..+.....-|+. |++++|+.+|+.++...+.
T Consensus 111 ~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~ 147 (307)
T 2ifu_A 111 TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFEN 147 (307)
T ss_dssp CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHh
Confidence 122345667888 9999999999999987654
No 150
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.25 E-value=78 Score=28.68 Aligned_cols=66 Identities=11% Similarity=-0.116 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001139 360 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 433 (1143)
Q Consensus 360 ~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~ 433 (1143)
...|...+.+..+.|+++.|...+.++..+... ...+.+..|.++...|+...|+..++..+...+
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGG--------DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 455777788888999999999988877655211 123457789999999999999999988776543
No 151
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=47.21 E-value=2.1e+02 Score=30.41 Aligned_cols=105 Identities=14% Similarity=0.054 Sum_probs=59.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCC---ch
Q 001139 362 HLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNE---EA 438 (1143)
Q Consensus 362 ~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~---~~ 438 (1143)
.+.+.+.+.+..|++..|..+..++..+....+ ............+.++...|+...|+..++..+.-..... ..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~ 115 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR--SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTA 115 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 344456677788888888888776655432111 0011112335677888899999999998886654332211 22
Q ss_pred hHHHHHhhhhHHhhhcCChHHHHHHhhhhhhhcc
Q 001139 439 PDVYRLVGKWLAESRSSNSRIILENYLKPAVSFS 472 (1143)
Q Consensus 439 a~~~~llg~Wlaesr~e~~~~I~~~Y~~~a~~~~ 472 (1143)
+.++..+|.-... .+++.-++.| +.|+.+.
T Consensus 116 a~~~~~lg~~~~~---g~~~~A~~~~-~~Al~~~ 145 (307)
T 2ifu_A 116 AMALDRAGKLMEP---LDLSKAVHLY-QQAAAVF 145 (307)
T ss_dssp HHHHHHHHHHHTT---TCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHc---CCHHHHHHHH-HHHHHHH
Confidence 4455555554432 4455555444 3465443
No 152
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=46.99 E-value=26 Score=38.20 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=32.9
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhc--cccCCCCCCCCCccccHHHHhh
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFE--QGLMLKTPERVPFRLTRDIIDG 1015 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~--~~~~l~~pE~VPFRLT~~i~~~ 1015 (1143)
=||-.|+|||++...+.+.=+|||.+-. .+......-..|.-..|++...
T Consensus 153 H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~y~aPE~~~~ 204 (330)
T 3nsz_A 153 HRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVD 204 (330)
T ss_dssp CCCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSCCSCGGGCCHHHHTT
T ss_pred eCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCCccccccccccccChhhhcC
Confidence 4899999999998666999999998832 2222222223344455666544
No 153
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=46.45 E-value=32 Score=33.88 Aligned_cols=67 Identities=9% Similarity=-0.006 Sum_probs=43.6
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhH
Q 001139 88 LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHV 167 (1143)
Q Consensus 88 l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~ 167 (1143)
+-.....+.+.|++++|+.+|+.+++..|+. ... +..+..+ .+...+.++-.||..||.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~---~~~-------------~a~~~~~--~~a~a~~n~g~al~~Lgr~~e 75 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTM---PPE-------------EAFDHAG--FDAFCHAGLAEALAGLRSFDE 75 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS---CTT-------------SCCCHHH--HHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC---cch-------------hhhhhcc--chHHHHHHHHHHHHHCCCHHH
Confidence 3466778889999999999999999988761 000 0000000 012256677788999998877
Q ss_pred HHHHH
Q 001139 168 LDMYC 172 (1143)
Q Consensus 168 l~~~~ 172 (1143)
...++
T Consensus 76 Al~~~ 80 (159)
T 2hr2_A 76 ALHSA 80 (159)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65443
No 154
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=45.63 E-value=81 Score=34.80 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=22.4
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHhh
Q 001139 89 SSQIVTLEHEGNWSKALEYYELQVRS 114 (1143)
Q Consensus 89 ~~~i~~yE~~g~w~~Al~~Ye~~l~~ 114 (1143)
.....-|...|++++|+.+|+.++..
T Consensus 226 ~~lg~~y~~~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 226 LNIANSYDRSGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 35677889999999999999999884
No 155
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=44.18 E-value=21 Score=34.81 Aligned_cols=61 Identities=16% Similarity=-0.039 Sum_probs=41.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001139 363 LLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYIS 429 (1143)
Q Consensus 363 wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~ 429 (1143)
|...+.+....|++..|...+.++..+.. .. ....+....+.++...|+.+.|+...+..+
T Consensus 111 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~----~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 111 ACELAVQYNQVGRDEEALELLWNILKVNL--GA----QDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCT--TT----TTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCc--cc----ChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 44456777889999999998887754421 11 011244667888899999988888776544
No 156
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=43.96 E-value=71 Score=37.53 Aligned_cols=87 Identities=13% Similarity=0.181 Sum_probs=68.1
Q ss_pred chHHHHHHHHHhhCCChhhHhhcccc-------c---chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCC
Q 001139 60 PRHIEILVSAVTQINEPDSLYGIIQS-------H---KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSP 129 (1143)
Q Consensus 60 ~~~~e~L~~iY~~L~epD~~~Gi~~~-------~---~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~ 129 (1143)
...+..|+..|.+.+++|.+..+... + +....|..|-+.|++++|...|+.-.+.+-.
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~------------ 172 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVV------------ 172 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC------------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC------------
Confidence 45678999999999999999888642 2 3468899999999999999999886654221
Q ss_pred CCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHHHHHHhhh
Q 001139 130 HGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGL 175 (1143)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~~~~~~l 175 (1143)
| +...+..+++++-..|.++.+..+.+.+
T Consensus 173 ---P--------------d~~ty~~Li~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 173 ---P--------------EEPELAALLKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp ---C--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---C--------------CHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 1 2356788999999999988877666554
No 157
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=43.84 E-value=1.1e+02 Score=29.39 Aligned_cols=55 Identities=15% Similarity=0.077 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhCCChhhHhhcccc---------------cchhhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 001139 62 HIEILVSAVTQINEPDSLYGIIQS---------------HKLSSQIVTLEHEGNWSKALEYYELQVRSDV 116 (1143)
Q Consensus 62 ~~e~L~~iY~~L~epD~~~Gi~~~---------------~~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~ 116 (1143)
....|-.+|...+++|...-.... ..+.....-|...|++++|+.+|+.+++...
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 97 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLA 97 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 344555666666666654443211 1234566788999999999999999987644
No 158
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=43.21 E-value=72 Score=32.29 Aligned_cols=92 Identities=12% Similarity=-0.031 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----cc--
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----HK-- 87 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~~-- 87 (1143)
...+|.+..+-|-|..|+-++|..+... |+. ...+...-.|..+|-..++.|.+...... +.
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~--------p~~---~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~ 75 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRY--------PFG---PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 75 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTS---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCC---hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 3457888999999999999999865432 110 11123445578889999998887666431 11
Q ss_pred -----hhhHHHHHH------------------hhCCHHHHHHHHHHHHhhhhh
Q 001139 88 -----LSSQIVTLE------------------HEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 88 -----l~~~i~~yE------------------~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
+-.....|. ..|++++|+..|+..+...|+
T Consensus 76 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~ 128 (225)
T 2yhc_A 76 NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN 128 (225)
T ss_dssp THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT
T ss_pred cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC
Confidence 112333333 368999999999999998776
No 159
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=42.14 E-value=62 Score=38.01 Aligned_cols=73 Identities=8% Similarity=-0.029 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHHHHHccCChHHHHHHHHHHHhhcCC-CCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001139 356 KDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTG-PGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYIS 429 (1143)
Q Consensus 356 ~~~~~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~-~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~ 429 (1143)
+..+..++...|.+.+..|++..|..-..++..+... .+.. -|....+....|.++|.+|+..+|+.+++..+
T Consensus 347 Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 347 NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN-NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4457778888999999999999998876655443210 0111 23333345678999999999999999887654
No 160
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=41.11 E-value=1.5e+02 Score=28.23 Aligned_cols=66 Identities=14% Similarity=-0.036 Sum_probs=48.3
Q ss_pred HHHHHHHH-HHccCCh--HHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC
Q 001139 362 HLLESAST-LRKGFRL--SQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESN 435 (1143)
Q Consensus 362 ~wl~~a~l-aRk~g~~--~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~ 435 (1143)
.|...+.+ ....|++ ..|...+.++..+.. ....+.+..|.++...|+...|+..++..+...+..
T Consensus 80 ~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 80 LYAALATVLYYQASQHMTAQTRAMIDKALALDS--------NEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 45566666 7788888 889888887765531 112345778999999999999999998887765543
No 161
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=40.98 E-value=1e+02 Score=32.61 Aligned_cols=92 Identities=5% Similarity=-0.024 Sum_probs=58.5
Q ss_pred HHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc------------
Q 001139 18 VAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS------------ 85 (1143)
Q Consensus 18 lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~------------ 85 (1143)
+|..-...|.|..|+-|++..++... ... ........+..|-.+|...++.|.+.-....
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~-----~~~---~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~ 192 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQL-----TGI---DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE 192 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCC-----CSS---CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHh-----cCC---chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc
Confidence 45555666788888888876543210 000 0001123455678888888988876555321
Q ss_pred ----cchhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 86 ----HKLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 86 ----~~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
..+...+.-|.+.|++++|+.+|+.++...+.
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 12235667899999999999999999876543
No 162
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=40.46 E-value=11 Score=40.88 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=23.2
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
=+|=.|+|||++ +|.+.=+|||.+-.
T Consensus 216 HrDlkp~NILl~--~~~vkl~DFG~a~~ 241 (282)
T 1zar_A 216 HGDLSQYNVLVS--EEGIWIIDFPQSVE 241 (282)
T ss_dssp CSCCSTTSEEEE--TTEEEECCCTTCEE
T ss_pred eCCCCHHHEEEE--CCcEEEEECCCCeE
Confidence 379999999999 99999999998753
No 163
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=40.12 E-value=12 Score=39.66 Aligned_cols=48 Identities=31% Similarity=0.448 Sum_probs=31.7
Q ss_pred CCCCCCceEEecCCCeEEEeecchhhccccCCCCCCCCCcccc---HHHHhhhcccccc
Q 001139 967 GDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLT---RDIIDGMGVTGVE 1022 (1143)
Q Consensus 967 gDRh~~NIll~~~tG~v~hiDfg~~f~~~~~l~~pE~VPFRLT---~~i~~~~g~~g~e 1022 (1143)
||=+|+|||++. ++.=||||.+... ..|....| |. .|+.+++.-.|+.
T Consensus 195 rDlkp~NILl~~---~~~liDFG~a~~~----~~~~~~~~-l~rd~~~~~~~f~~~g~~ 245 (258)
T 1zth_A 195 ADLSEYNIMYID---KVYFIDMGQAVTL----RHPMAESY-LERDVRNIIRFFSKYGVK 245 (258)
T ss_dssp SSCSTTSEEESS---SEEECCCTTCEET----TSTTHHHH-HHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHEEEcC---cEEEEECcccccC----CCccHHHH-HHHHHHHHHHHHHHcCCC
Confidence 899999999996 8999999987543 22332222 33 3455666555554
No 164
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=38.30 E-value=45 Score=38.54 Aligned_cols=92 Identities=7% Similarity=-0.167 Sum_probs=64.0
Q ss_pred HHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-------------
Q 001139 19 AKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS------------- 85 (1143)
Q Consensus 19 A~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~------------- 85 (1143)
.+.+...|-|..|+-+.|..+...... ++.. + ...-..+..|..+|...++.|.+.-....
T Consensus 305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~--lg~~---H-p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 378 (433)
T 3qww_A 305 FRRAKHYKSPSELLEICELSQEKMSSV--FEDS---N-VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYS 378 (433)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHTTT--BCTT---S-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHHhhhccCHHHHHHHHHHHHHHhhCc--cChh---c-hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 456666788899998888766543211 2221 0 11123567899999999999987666321
Q ss_pred ----cchhhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 001139 86 ----HKLSSQIVTLEHEGNWSKALEYYELQVRSDV 116 (1143)
Q Consensus 86 ----~~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~ 116 (1143)
..+...+.-|.+.|+|++|+..|+.++....
T Consensus 379 p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~ 413 (433)
T 3qww_A 379 LNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME 413 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 1356788899999999999999999987543
No 165
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=36.71 E-value=1.1e+02 Score=25.76 Aligned_cols=67 Identities=13% Similarity=-0.052 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHc-CChHHHHHHHHHHHHhcc
Q 001139 361 QHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQ-GQHEMAINLAKYISENYE 433 (1143)
Q Consensus 361 ~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~-Ge~~~Ai~~Lk~l~~~~~ 433 (1143)
..|...|.+....|+++.|...+.++..+.. . . ....+.+..|.++-.. |+...|+..++.++...+
T Consensus 41 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--~-~---~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 41 KYWLMKGKALYNLERYEEAVDCYNYVINVIE--D-E---YNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC--C-T---TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCc--c-c---chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 4466677778888888888888777654421 1 0 0113346677888888 888888888887765543
No 166
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=36.62 E-value=63 Score=37.14 Aligned_cols=73 Identities=14% Similarity=-0.075 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHHHHHHccCChHHHHHHHHHHHhhcCC-CCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001139 356 KDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTG-PGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYIS 429 (1143)
Q Consensus 356 ~~~~~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~-~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~ 429 (1143)
+..+..++...+.+.+..|+++.|..-..++..+... -+ ...|.........|+++|.+|+..+|+.+++..+
T Consensus 325 h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg-~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 325 NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP-GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC-SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3456777778889999999999998876665543210 01 1123333445789999999999999999887553
No 167
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=36.07 E-value=62 Score=37.30 Aligned_cols=73 Identities=8% Similarity=-0.109 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHHHHHccCChHHHHHHHHHHHhhcCC-CCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001139 356 KDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTG-PGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYIS 429 (1143)
Q Consensus 356 ~~~~~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~-~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~ 429 (1143)
|..+..++...|.+.+..|+++.|..-..++..+... -+.. .|....+..-.|.++|.+|+..+|+.+++..+
T Consensus 336 Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 336 NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY-SLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4457778888999999999999998876665543210 0111 23333345678999999999999999987653
No 168
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=35.68 E-value=65 Score=34.54 Aligned_cols=77 Identities=10% Similarity=0.187 Sum_probs=49.6
Q ss_pred hhHHHHHhhhccCCCcHHHHHHHHHhh-------cc----cCccchhHchHHHHhhhCCCccccccccHHHHHHHHHHHH
Q 001139 594 RVVFRLVSLWFSLSSRQNVIKNMVDTI-------DE----VQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKM 662 (1143)
Q Consensus 594 ~~~~RllsLWf~~~~~~~v~~~l~~~~-------~~----ip~~k~l~~ipQL~srL~~~~~~~~~~~f~~~L~~ll~~i 662 (1143)
+.+++-++|.|- +.+..|.....+.+ .. +..+.--.++|.|+.+++++. ..|++....++..+
T Consensus 86 Dll~kw~~lr~~-d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k-----~~vR~~~r~il~~l 159 (266)
T 2of3_A 86 DLLLKWCTLRFF-ETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAK-----DNMRTSVRDIVNVL 159 (266)
T ss_dssp HHHHHHHHHHTT-SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSS-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCCh-----HHHHHHHHHHHHHH
Confidence 335666666664 34544433222222 11 233334567899999999874 35888899999888
Q ss_pred HHhCChhhHHHHHh
Q 001139 663 AIDHPYHTIFQLLA 676 (1143)
Q Consensus 663 ~~~hP~~~l~~l~~ 676 (1143)
+.-+|...++..+.
T Consensus 160 ~~v~~~~~v~~~l~ 173 (266)
T 2of3_A 160 SDVVGPLKMTPMLL 173 (266)
T ss_dssp HHHHCHHHHHHHHH
T ss_pred HHHCCHHHHHHHHH
Confidence 88899987776654
No 169
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=35.13 E-value=48 Score=37.41 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=24.4
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhh
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAF 992 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f 992 (1143)
=+|-.|+||||+..+|.+.=+|||.+-
T Consensus 164 HrDlkp~Nill~~~~~~~kL~DFG~a~ 190 (394)
T 4e7w_A 164 HRDIKPQNLLLDPPSGVLKLIDFGSAK 190 (394)
T ss_dssp CSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred CCCCCHHHEEEcCCCCcEEEeeCCCcc
Confidence 479999999999789999999999884
No 170
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=34.97 E-value=2e+02 Score=27.58 Aligned_cols=95 Identities=11% Similarity=-0.005 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc--------c
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS--------H 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~--------~ 86 (1143)
+..+|......|-|..|+-+++..+..-... +. ..........|-.+|...++++...-.... +
T Consensus 29 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 100 (203)
T 3gw4_A 29 RFMLGYVYAFMDRFDEARASFQALQQQAQKS---GD-----HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP 100 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---CC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc---CC-----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 5678999999999999999999876522100 00 011123455677888888888876655421 1
Q ss_pred -c-------hhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 87 -K-------LSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 87 -~-------l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
. ......-|...|++++|+.+|+..+...+.
T Consensus 101 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 139 (203)
T 3gw4_A 101 EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ 139 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 1 234567888999999999999999876443
No 171
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=34.87 E-value=51 Score=36.22 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=24.8
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
=||-.|+||||+..+|.+.=+|||.+..
T Consensus 154 H~Dlkp~NIll~~~~~~~kl~Dfg~a~~ 181 (360)
T 3e3p_A 154 HRDIKPHNVLVNEADGTLKLCDFGSAKK 181 (360)
T ss_dssp CSCCCGGGEEEETTTTEEEECCCTTCBC
T ss_pred cCcCCHHHEEEeCCCCcEEEeeCCCcee
Confidence 3789999999998799999999998854
No 172
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=34.66 E-value=80 Score=37.10 Aligned_cols=86 Identities=12% Similarity=0.020 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-------c-
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-------H- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-------~- 86 (1143)
|..|-.+..++|.+..|+-.++..... + ..+....+..|+..|.+-++.|.+..+... +
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~--g-----------~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd 174 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAF--G-----------IQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE 174 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHT--T-----------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--C-----------CCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Confidence 567888999999999999888764221 1 112345678999999999999999988642 2
Q ss_pred --chhhHHHHHHhhCCHHHHHHHHHHHHh
Q 001139 87 --KLSSQIVTLEHEGNWSKALEYYELQVR 113 (1143)
Q Consensus 87 --~l~~~i~~yE~~g~w~~Al~~Ye~~l~ 113 (1143)
+....+.-|-+.|++++|+..++.--+
T Consensus 175 ~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 175 EPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 357899999999999999999987543
No 173
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=34.42 E-value=2.5e+02 Score=27.66 Aligned_cols=74 Identities=16% Similarity=0.041 Sum_probs=55.3
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCCchhHHHHH
Q 001139 365 ESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRL 444 (1143)
Q Consensus 365 ~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a~~~~l 444 (1143)
..+.+..+.|++..|...+.++..+.+ ....+.+..+.++...|+...|+..++..+...+. .+.++..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~ 127 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAP--------NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD---NLAANIF 127 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHH
Confidence 378888999999999999988866532 12234577899999999999999999988775443 3455555
Q ss_pred hhhhH
Q 001139 445 VGKWL 449 (1143)
Q Consensus 445 lg~Wl 449 (1143)
+|...
T Consensus 128 lg~~~ 132 (208)
T 3urz_A 128 LGNYY 132 (208)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 56543
No 174
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=34.34 E-value=3.8e+02 Score=27.11 Aligned_cols=74 Identities=16% Similarity=0.082 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHH--------cCChHHHHHHHHHHHHh
Q 001139 360 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRA--------QGQHEMAINLAKYISEN 431 (1143)
Q Consensus 360 ~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~--------~Ge~~~Ai~~Lk~l~~~ 431 (1143)
...|...|.+..+.|++..|...+.++..+... . +....+.+..+.++.. .|+...|+..++.++..
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~--~---~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQI--D---PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C---TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC--C---chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 455677788889999999999999888665321 1 1122456778999999 99999999999999887
Q ss_pred ccCCCch
Q 001139 432 YESNEEA 438 (1143)
Q Consensus 432 ~~~~~~~ 438 (1143)
.+.....
T Consensus 127 ~p~~~~~ 133 (261)
T 3qky_A 127 YPNHELV 133 (261)
T ss_dssp CTTCTTH
T ss_pred CcCchhH
Confidence 7655433
No 175
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=33.43 E-value=1.4e+02 Score=24.95 Aligned_cols=61 Identities=18% Similarity=0.010 Sum_probs=46.2
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhh-HHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001139 365 ESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWL-GRLEEAKLLRAQGQHEMAINLAKYISENYE 433 (1143)
Q Consensus 365 ~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~-~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~ 433 (1143)
..+....+.|++..|...+.++..+.. .... +.+..|.++...|+...|+..++..+...+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEP--------VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCS--------STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCC--------CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 346677789999999999888765431 1123 457789999999999999999988876544
No 176
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=33.36 E-value=58 Score=36.39 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=24.4
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhh
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAF 992 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f 992 (1143)
=+|-.|+|||++..+|.+.=+|||.+-
T Consensus 164 H~Dikp~Nil~~~~~~~~kl~Dfg~a~ 190 (383)
T 3eb0_A 164 HRDIKPQNLLVNSKDNTLKLCDFGSAK 190 (383)
T ss_dssp CSCCCGGGEEEETTTTEEEECCCTTCE
T ss_pred cCccCHHHEEEcCCCCcEEEEECCCCc
Confidence 378999999999889999999999884
No 177
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=31.67 E-value=1.9e+02 Score=31.52 Aligned_cols=66 Identities=17% Similarity=-0.017 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001139 360 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 433 (1143)
Q Consensus 360 ~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~ 433 (1143)
...|...|.+..+.|++..|...+.++..+.. ....+.+..|.++...|+...|+..++..+...+
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p--------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 261 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDS--------NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 261 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 34577788889999999999999988876632 1224457899999999999999999988776544
No 178
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=31.42 E-value=21 Score=37.27 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=21.3
Q ss_pred hccCCCCCCceEEecCCCeEE-Eeecchh
Q 001139 964 VGLGDRHAMNILIDQATAEVV-HIDLGVA 991 (1143)
Q Consensus 964 lglgDRh~~NIll~~~tG~v~-hiDfg~~ 991 (1143)
+-=||=||+|||++. |+++ -|||+.+
T Consensus 186 l~HgDl~~~Nil~~~--~~~~~liD~~~a 212 (264)
T 1nd4_A 186 VTHGDACLPNIMVEN--GRFSGFIDCGRL 212 (264)
T ss_dssp EECSSCCGGGEEEET--TEEEEECCCTTC
T ss_pred EECCCCCCCcEEEEC--CcEEEEEcchhc
Confidence 556999999999974 5666 8999975
No 179
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=31.19 E-value=1.8e+02 Score=31.81 Aligned_cols=117 Identities=12% Similarity=0.027 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc-----c---
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 86 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~-----~--- 86 (1143)
...+|.+....|-|..||-.++..++.. + .....+.+-++..||-+++.+|.+.-+... +
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~--------~----~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~ 170 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDND--------E----AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTV 170 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSS--------C----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccC--------C----CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccc
Confidence 3578999999999999999998764310 0 012345566889999999999998888631 2
Q ss_pred ----c-hhhHHHH--HHhhC--CHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHH
Q 001139 87 ----K-LSSQIVT--LEHEG--NWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMR 157 (1143)
Q Consensus 87 ----~-l~~~i~~--yE~~g--~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllr 157 (1143)
. +...+.. +-..| +..+|+.+|+...+..|+ +.....++.
T Consensus 171 ~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~-------------------------------~~~~~lLln 219 (310)
T 3mv2_B 171 SGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT-------------------------------WKTQLGLLN 219 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS-------------------------------HHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC-------------------------------cccHHHHHH
Confidence 1 1122212 22234 899999999997664331 223346666
Q ss_pred HHHhhchhhHHHHHHhh
Q 001139 158 SLQQVGCMHVLDMYCKG 174 (1143)
Q Consensus 158 cL~~LG~~~~l~~~~~~ 174 (1143)
|...+|.+..+....+.
T Consensus 220 ~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 220 LHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHHHTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 88999998888765543
No 180
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=30.92 E-value=19 Score=40.42 Aligned_cols=26 Identities=27% Similarity=0.403 Sum_probs=23.3
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhh
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAF 992 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f 992 (1143)
=||-||+|||++. +|.+.=+|||.+-
T Consensus 223 H~Dlkp~NIl~~~-~~~ikl~DfG~~~ 248 (365)
T 2y7j_A 223 HRDLKPENILLDD-NMQIRLSDFGFSC 248 (365)
T ss_dssp CSCCSGGGEEECT-TCCEEECCCTTCE
T ss_pred cCCCCHHHEEECC-CCCEEEEecCccc
Confidence 4899999999995 8999999999764
No 181
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=30.36 E-value=27 Score=39.19 Aligned_cols=49 Identities=10% Similarity=0.024 Sum_probs=35.1
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhccccCCCCCCCCCccccHHHHhhh
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGM 1016 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~~~~~l~~pE~VPFRLT~~i~~~~ 1016 (1143)
=+|=+|+||||+. +|.+.=+|||.+...+......-. |.=+.|++...-
T Consensus 229 HrDikp~NIll~~-~~~~kL~DFG~a~~~~~~~~~~~g-~~y~aPE~~~~~ 277 (377)
T 3byv_A 229 HTYLRPVDIVLDQ-RGGVFLTGFEHLVRDGARVVSSVS-RGFEPPELEARR 277 (377)
T ss_dssp CSCCCGGGEEECT-TCCEEECCGGGCEETTCEEECCCC-TTCCCHHHHHHH
T ss_pred cCCCCHHHEEEcC-CCCEEEEechhheecCCcccCCCC-cCccChhhhccc
Confidence 4899999999995 799999999998765432222222 555667777654
No 182
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=29.71 E-value=1.1e+02 Score=33.62 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=24.4
Q ss_pred ccCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 965 GLGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 965 glgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
-=||-+|+|||++. +|.+.=+|||.+-.
T Consensus 134 vH~Dlkp~Nil~~~-~~~~kl~Dfg~a~~ 161 (346)
T 1ua2_A 134 LHRDLKPNNLLLDE-NGVLKLADFGLAKS 161 (346)
T ss_dssp CCCCCCGGGEEECT-TCCEEECCCGGGST
T ss_pred ECCCCCHHHEEEcC-CCCEEEEeccccee
Confidence 45899999999995 89999999998753
No 183
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=29.35 E-value=2.7e+02 Score=28.48 Aligned_cols=83 Identities=13% Similarity=0.019 Sum_probs=60.0
Q ss_pred HHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhh----CCChhhHhhcccc------
Q 001139 16 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQ----INEPDSLYGIIQS------ 85 (1143)
Q Consensus 16 ~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~----L~epD~~~Gi~~~------ 85 (1143)
..+|.....-+-|.+|+-+++..++. ..+...-.|-.+|.. .++++.+.-....
T Consensus 10 ~~lg~~~~~~~~~~~A~~~~~~a~~~----------------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 73 (273)
T 1ouv_A 10 VGLGAKSYKEKDFTQAKKYFEKACDL----------------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY 73 (273)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCC
Confidence 46788888899999999999976541 113345567788888 8887776655431
Q ss_pred -cchhhHHHHHHh----hCCHHHHHHHHHHHHhh
Q 001139 86 -HKLSSQIVTLEH----EGNWSKALEYYELQVRS 114 (1143)
Q Consensus 86 -~~l~~~i~~yE~----~g~w~~Al~~Ye~~l~~ 114 (1143)
........-|.. .|++++|+.+|+.++..
T Consensus 74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 107 (273)
T 1ouv_A 74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL 107 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc
Confidence 123356667888 99999999999998764
No 184
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=27.31 E-value=3e+02 Score=28.10 Aligned_cols=14 Identities=7% Similarity=0.207 Sum_probs=8.3
Q ss_pred cCChHHHHHHHHHH
Q 001139 237 EGDSEEFYRKLKHS 250 (1143)
Q Consensus 237 ~~d~~~~~~~l~~a 250 (1143)
.+|.+.+....++|
T Consensus 235 ~~~~~~A~~~~~~a 248 (273)
T 1ouv_A 235 TRNEKQAIENFKKG 248 (273)
T ss_dssp SCCSTTHHHHHHHH
T ss_pred ccCHHHHHHHHHHH
Confidence 45666666666554
No 185
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=27.27 E-value=52 Score=28.77 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=23.6
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHhh
Q 001139 88 LSSQIVTLEHEGNWSKALEYYELQVRS 114 (1143)
Q Consensus 88 l~~~i~~yE~~g~w~~Al~~Ye~~l~~ 114 (1143)
+-.++...+..|++++|+.+|...++.
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 557888999999999999999988764
No 186
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=27.08 E-value=61 Score=35.56 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=23.2
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhh
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAF 992 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f 992 (1143)
=+|-.|+|||++. +|.+.=+|||.+-
T Consensus 137 HrDlkp~NIll~~-~~~~kl~DFG~a~ 162 (328)
T 3fe3_A 137 HRDLKAENLLLDA-DMNIKIADFGFSN 162 (328)
T ss_dssp CSCCCGGGEEECT-TSCEEECSTTCCG
T ss_pred ccCCCHHHEEEcC-CCCEEEeeccCce
Confidence 4799999999995 8999999999874
No 187
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=26.94 E-value=75 Score=34.06 Aligned_cols=29 Identities=31% Similarity=0.211 Sum_probs=25.4
Q ss_pred ccCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 965 GLGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 965 glgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
--||-+|+||+++..+|.+.=+|||.+..
T Consensus 161 ~H~dlkp~Nil~~~~~~~~kl~dfg~~~~ 189 (312)
T 2iwi_A 161 VHRDIKDENILIDLRRGCAKLIDFGSGAL 189 (312)
T ss_dssp ECCCCSGGGEEEETTTTEEEECCCSSCEE
T ss_pred eecCCChhhEEEeCCCCeEEEEEcchhhh
Confidence 44899999999997799999999998654
No 188
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=26.92 E-value=1.8e+02 Score=30.63 Aligned_cols=95 Identities=6% Similarity=-0.027 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhchhHHHhhhhhhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCChhhHhhcccc---------
Q 001139 15 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS--------- 85 (1143)
Q Consensus 15 ~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~iY~~L~epD~~~Gi~~~--------- 85 (1143)
+..++..-..-+.|..|+-|++..+.... ...+. ......+..|-.+|..+++.|.+.-....
T Consensus 118 ~~~l~~~~~~~~~~~~Ai~~~~~al~~~~-----~~~~~---~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 189 (293)
T 3u3w_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQL-----TGIDV---YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH 189 (293)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHTCC-----CCSCT---THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHHhc-----ccccH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Confidence 44567777888999999999999765211 11110 00122356688889999998876655321
Q ss_pred c-------chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 001139 86 H-------KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 117 (1143)
Q Consensus 86 ~-------~l~~~i~~yE~~g~w~~Al~~Ye~~l~~~~~ 117 (1143)
. .+.....-|.+.|++++|+.+|+.++...+.
T Consensus 190 ~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 190 DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 0 1245677899999999999999999987655
No 189
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=26.78 E-value=1.9e+02 Score=35.25 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=25.0
Q ss_pred HHHHHHHhhCCChhhHhhcccc----cchhhHHHHHHhhCCHHHHHHHHHH
Q 001139 64 EILVSAVTQINEPDSLYGIIQS----HKLSSQIVTLEHEGNWSKALEYYEL 110 (1143)
Q Consensus 64 e~L~~iY~~L~epD~~~Gi~~~----~~l~~~i~~yE~~g~w~~Al~~Ye~ 110 (1143)
+.-.+.|.++++.+++.=+... ..+...+...+..|++..|..+|-.
T Consensus 698 ~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~ 748 (814)
T 3mkq_A 698 KLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWI 748 (814)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 4444555555555554333211 1234455666677777777777644
No 190
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=26.14 E-value=78 Score=34.26 Aligned_cols=29 Identities=34% Similarity=0.297 Sum_probs=25.4
Q ss_pred ccCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 965 GLGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 965 glgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
--||-.|+|||++..+|.+.=+|||.+..
T Consensus 171 vH~Dlkp~NIll~~~~~~~kL~Dfg~~~~ 199 (320)
T 3a99_A 171 LHRDIKDENILIDLNRGELKLIDFGSGAL 199 (320)
T ss_dssp ECCCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred EeCCCCHHHEEEeCCCCCEEEeeCccccc
Confidence 35899999999998899999999998754
No 191
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=25.91 E-value=28 Score=37.03 Aligned_cols=29 Identities=21% Similarity=0.195 Sum_probs=25.4
Q ss_pred ccCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 965 GLGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 965 glgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
--||-+|+||+++..+|.+.=+|||.+-.
T Consensus 144 ~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~ 172 (295)
T 2clq_A 144 VHRDIKGDNVLINTYSGVLKISDFGTSKR 172 (295)
T ss_dssp ECCCCSGGGEEEETTTCCEEECCTTTCEE
T ss_pred EccCCChhhEEEECCCCCEEEeecccccc
Confidence 35899999999998899999999998743
No 192
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=25.74 E-value=29 Score=39.06 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.8
Q ss_pred CCCCCCceEEecCCCeEEEeecchh
Q 001139 967 GDRHAMNILIDQATAEVVHIDLGVA 991 (1143)
Q Consensus 967 gDRh~~NIll~~~tG~v~hiDfg~~ 991 (1143)
.|=-|+||||+..+|.+-=+|||.+
T Consensus 141 RDiKPeNiLl~~~~~~~kl~DFGla 165 (361)
T 4f9c_A 141 RDVKPSNFLYNRRLKKYALVDFGLA 165 (361)
T ss_dssp SCCSGGGEEEETTTTEEEECCCTTC
T ss_pred CcCCHHHeEEeCCCCeEEECcCCCC
Confidence 5778999999998899999999987
No 193
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=25.50 E-value=29 Score=36.93 Aligned_cols=28 Identities=36% Similarity=0.281 Sum_probs=24.8
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
-||=+|+|||++..+|.+.=+|||.+..
T Consensus 154 H~dikp~Nil~~~~~~~~kl~Dfg~~~~ 181 (290)
T 1t4h_A 154 HRDLKCDNIFITGPTGSVKIGDLGLATL 181 (290)
T ss_dssp CSCCCGGGEEESSTTSCEEECCTTGGGG
T ss_pred ECCCCHHHEEEECCCCCEEEeeCCCccc
Confidence 4799999999997799999999998843
No 194
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=25.44 E-value=78 Score=35.20 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=24.9
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhccc
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFEQG 995 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~~~ 995 (1143)
=||-.|+|||++. +|.+.=+|||.+-..+
T Consensus 151 H~Dlkp~NIll~~-~~~~kl~Dfg~a~~~~ 179 (367)
T 1cm8_A 151 HRDLKPGNLAVNE-DCELKILDFGLARQAD 179 (367)
T ss_dssp CCCCCGGGEEECT-TCCEEECCCTTCEECC
T ss_pred ccCcCHHHEEEcC-CCCEEEEeeecccccc
Confidence 4899999999996 8999999999886533
No 195
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=25.38 E-value=92 Score=35.38 Aligned_cols=28 Identities=32% Similarity=0.360 Sum_probs=24.4
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
=+|-.|+||||+..+|.+.=+|||.+..
T Consensus 179 HrDlkp~NILl~~~~~~~kl~DFG~a~~ 206 (420)
T 1j1b_A 179 HRDIKPQNLLLDPDTAVLKLCDFGSAKQ 206 (420)
T ss_dssp CSCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred ccCCChhhEEEeCCCCeEEeccchhhhh
Confidence 3799999999998788889999998853
No 196
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=25.34 E-value=33 Score=36.04 Aligned_cols=28 Identities=32% Similarity=0.529 Sum_probs=22.4
Q ss_pred HhhccCCCCCCceEEecCCCeEE-Eeecchh
Q 001139 962 YIVGLGDRHAMNILIDQATAEVV-HIDLGVA 991 (1143)
Q Consensus 962 yilglgDRh~~NIll~~~tG~v~-hiDfg~~ 991 (1143)
.++-=||=||+|||++. |+++ =|||+.+
T Consensus 183 ~~l~HgDl~~~Nil~~~--~~~~~lIDwe~a 211 (263)
T 3tm0_A 183 LVFSHGDLGDSNIFVKD--GKVSGFIDLGRS 211 (263)
T ss_dssp EEEECSSCCTTSEEEET--TEEEEECCCTTC
T ss_pred ceEECCCCCcCcEEEEC--CcEEEEEEchhc
Confidence 34666999999999984 6765 8999865
No 197
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=25.23 E-value=27 Score=37.79 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=23.8
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
=||-+|+||||+. +|.+.=+|||.+-.
T Consensus 187 H~Dlkp~NIll~~-~~~~kL~DfG~a~~ 213 (332)
T 3qd2_B 187 HRDLKPSNIFFTM-DDVVKVGDFGLVTA 213 (332)
T ss_dssp CCCCCGGGEEECT-TCCEEECCCTTCEE
T ss_pred ecCCCcccEEEeC-CCCEEEeecCcccc
Confidence 3899999999995 89999999998754
No 198
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=25.11 E-value=66 Score=35.33 Aligned_cols=29 Identities=21% Similarity=0.294 Sum_probs=24.5
Q ss_pred ccCCCCCCceEEecCCCeEEEeecchhhcc
Q 001139 965 GLGDRHAMNILIDQATAEVVHIDLGVAFEQ 994 (1143)
Q Consensus 965 glgDRh~~NIll~~~tG~v~hiDfg~~f~~ 994 (1143)
--||-+|+|||++. +|.+.=+|||.+...
T Consensus 148 vH~dlkp~NIl~~~-~~~~kl~Dfg~~~~~ 176 (353)
T 3coi_A 148 VHRDLKPGNLAVNE-DCELKILDFGLARHA 176 (353)
T ss_dssp CCSSCCGGGEEECT-TCCEEECSTTCTTC-
T ss_pred ccCCCCHHHEeECC-CCcEEEeecccccCC
Confidence 35899999999995 899999999988543
No 199
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=24.62 E-value=33 Score=37.13 Aligned_cols=30 Identities=27% Similarity=0.233 Sum_probs=23.9
Q ss_pred hhccCCCCCCceEEecCCCeE-EEeecchhh
Q 001139 963 IVGLGDRHAMNILIDQATAEV-VHIDLGVAF 992 (1143)
Q Consensus 963 ilglgDRh~~NIll~~~tG~v-~hiDfg~~f 992 (1143)
.+-=||=||+||+++..+|++ .-|||+.+.
T Consensus 192 ~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~ 222 (304)
T 3sg8_A 192 CLIHNDFSSDHILFDTEKNTICGIIDFGDAA 222 (304)
T ss_dssp EEECSCCCGGGEEEETTTTEEEEECCCTTCE
T ss_pred eeEeCCCCcccEEEeCCCCCEEEEEeCCCCc
Confidence 456699999999999764654 589998764
No 200
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=24.57 E-value=51 Score=34.73 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=23.8
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
=||-+|+|||++. +|.+.=+|||.+..
T Consensus 132 H~dlkp~Nili~~-~~~~~l~Dfg~~~~ 158 (279)
T 3fdn_A 132 HRDIKPENLLLGS-AGELKIADFGWSVH 158 (279)
T ss_dssp ECCCCGGGEEECT-TSCEEECSCCEESC
T ss_pred cccCChHhEEEcC-CCCEEEEecccccc
Confidence 4899999999995 99999999997754
No 201
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=24.56 E-value=1.1e+02 Score=32.43 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=23.8
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
=||-+|+|||++. +|.+.=+|||.+..
T Consensus 149 H~dikp~Nil~~~-~~~~kl~Dfg~~~~ 175 (302)
T 4e5w_A 149 HRDLAARNVLVES-EHQVKIGDFGLTKA 175 (302)
T ss_dssp CSCCSGGGEEEEE-TTEEEECCCTTCEE
T ss_pred cCCCchheEEEcC-CCCEEECccccccc
Confidence 4899999999996 89999999998753
No 202
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=24.30 E-value=1.4e+02 Score=31.97 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.9
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
=||-.|+|||++. +|.+.=+|||.+..
T Consensus 142 H~Dikp~NIl~~~-~~~~kl~Dfg~a~~ 168 (311)
T 3niz_A 142 HRDLKPQNLLINS-DGALKLADFGLARA 168 (311)
T ss_dssp CCCCCGGGEEECT-TCCEEECCCTTCEE
T ss_pred cCCCchHhEEECC-CCCEEEccCcCcee
Confidence 4899999999995 89999999998854
No 203
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=23.90 E-value=3.7e+02 Score=25.85 Aligned_cols=65 Identities=11% Similarity=-0.152 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001139 361 QHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 433 (1143)
Q Consensus 361 ~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~ 433 (1143)
..|...|.+..+.|++..|...+.++..+.. ....+.+..|.++-..|+...|+..++..+...+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK--------NNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 4466678888999999999999888766532 1223457889999999999999999988776543
No 204
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=23.85 E-value=34 Score=36.79 Aligned_cols=29 Identities=21% Similarity=0.141 Sum_probs=25.1
Q ss_pred ccCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 965 GLGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 965 glgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
--||-+|+|||++..+|.+.=+|||.+..
T Consensus 142 ~H~dlkp~Nil~~~~~~~~kl~Dfg~~~~ 170 (320)
T 2i6l_A 142 LHRDLKPANLFINTEDLVLKIGDFGLARI 170 (320)
T ss_dssp BCCCCSGGGEEEETTTTEEEECCCTTCBC
T ss_pred ecCCCCHHHEEEcCCCCeEEEccCccccc
Confidence 34899999999998889999999998753
No 205
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=23.77 E-value=43 Score=37.46 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=24.0
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
=+|-.|+||||+. +|.+.=+|||.+..
T Consensus 226 HrDlkp~NIll~~-~~~~kl~DFG~a~~ 252 (370)
T 2psq_A 226 HRDLAARNVLVTE-NNVMKIADFGLARD 252 (370)
T ss_dssp CSCCCGGGEEECT-TCCEEECCCSSCEE
T ss_pred ccccchhhEEECC-CCCEEEccccCCcc
Confidence 4899999999995 89999999998854
No 206
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=23.65 E-value=76 Score=35.30 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=22.9
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhcc
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFEQ 994 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~~ 994 (1143)
=||-.|+|||++. +|.+.=+|||.+...
T Consensus 167 H~Dikp~NIll~~-~~~~kL~Dfg~a~~~ 194 (371)
T 4exu_A 167 HRDLKPGNLAVNE-DCELKILDFGLARHA 194 (371)
T ss_dssp CSCCCGGGEEECT-TCCEEECSTTCC---
T ss_pred CCCcCHHHeEECC-CCCEEEEecCccccc
Confidence 4799999999995 899999999988543
No 207
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=23.64 E-value=2.7e+02 Score=31.76 Aligned_cols=66 Identities=14% Similarity=-0.039 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001139 360 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 433 (1143)
Q Consensus 360 ~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~ 433 (1143)
...|...|.+..+.|++..|...+.++..+... ...+.+..|+++...|+...|+..++..+...+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~--------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSA--------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 456777888999999999999999888766321 224567899999999999999999988776443
No 208
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=23.04 E-value=69 Score=35.29 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.6
Q ss_pred ccCCCCCCceEEecCCCeEEEeecchhh
Q 001139 965 GLGDRHAMNILIDQATAEVVHIDLGVAF 992 (1143)
Q Consensus 965 glgDRh~~NIll~~~tG~v~hiDfg~~f 992 (1143)
-=||-.|+|||++. +|.+.=+|||.+-
T Consensus 130 vH~Dlkp~NIll~~-~~~~kl~DFG~s~ 156 (336)
T 3h4j_B 130 VHRDLKPENLLLDD-NLNVKIADFGLSN 156 (336)
T ss_dssp CCCCCSTTTEEECT-TCCEEECCSSCTB
T ss_pred EecCCchhhEEEcC-CCCEEEEEeccce
Confidence 34899999999995 8999999999873
No 209
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=22.95 E-value=1.3e+02 Score=31.55 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=23.3
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhh
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAF 992 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f 992 (1143)
=||-+|+|||++. +|.+.=+|||.+-
T Consensus 147 H~dikp~Nili~~-~~~~kl~Dfg~~~ 172 (298)
T 3pls_A 147 HRDLAARNCMLDE-SFTVKVADFGLAR 172 (298)
T ss_dssp CSCCSGGGEEECT-TCCEEECCTTSSC
T ss_pred cCCCCcceEEEcC-CCcEEeCcCCCcc
Confidence 4899999999995 8999999999874
No 210
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=22.93 E-value=32 Score=38.41 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.7
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
=+|-.|+||||+. +|.+.=+|||.+-.
T Consensus 147 HrDlkp~NILl~~-~g~ikL~DFG~a~~ 173 (353)
T 3txo_A 147 YRDLKLDNVLLDH-EGHCKLADFGMCKE 173 (353)
T ss_dssp CCCCCGGGEEECT-TSCEEECCCTTCBC
T ss_pred ccCCCHHHEEECC-CCCEEEccccceee
Confidence 3799999999995 89999999998753
No 211
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=22.84 E-value=31 Score=39.47 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=24.1
Q ss_pred HhhccCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 962 YIVGLGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 962 yilglgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
.+|-=||=||+|||++. +| +.-|||+.++-
T Consensus 232 ~~liHGDl~~~Nil~~~-~~-~~lID~e~a~~ 261 (420)
T 2pyw_A 232 QALIHGDLHTGSVMVTQ-DS-TQVIDPEFSFY 261 (420)
T ss_dssp CEEECSCCSGGGEEECS-SC-EEECCCTTCEE
T ss_pred CeEEecCCCCCcEEEeC-CC-CEEEeCccccc
Confidence 45566999999999985 44 99999987654
No 212
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=22.82 E-value=35 Score=36.80 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=22.1
Q ss_pred CCCCCCceEEecCCCeEEEeecchh
Q 001139 967 GDRHAMNILIDQATAEVVHIDLGVA 991 (1143)
Q Consensus 967 gDRh~~NIll~~~tG~v~hiDfg~~ 991 (1143)
.|--|+||||+. +|.+-=+|||.+
T Consensus 136 RDiKP~NILl~~-~~~vkl~DFGla 159 (275)
T 3hyh_A 136 RDLKPENLLLDE-HLNVKIADFGLS 159 (275)
T ss_dssp CCCCTTTEEECT-TCCEEECCSSCC
T ss_pred ccCChHHeEECC-CCCEEEeecCCC
Confidence 688999999995 899999999987
No 213
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=22.82 E-value=46 Score=35.10 Aligned_cols=29 Identities=24% Similarity=0.239 Sum_probs=22.5
Q ss_pred ccCCCCCCceEEecCCCeEEEeecchhhcc
Q 001139 965 GLGDRHAMNILIDQATAEVVHIDLGVAFEQ 994 (1143)
Q Consensus 965 glgDRh~~NIll~~~tG~v~hiDfg~~f~~ 994 (1143)
--||-+|+||+++. +|.+.=+|||.+...
T Consensus 139 ~H~dlkp~Nil~~~-~~~~~l~Dfg~~~~~ 167 (278)
T 1byg_A 139 VHRDLAARNVLVSE-DNVAKVSDFGLTKEA 167 (278)
T ss_dssp CCSCCSGGGEEECT-TSCEEECCCCC----
T ss_pred cccCCCcceEEEeC-CCcEEEeeccccccc
Confidence 35899999999995 899999999987543
No 214
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=22.56 E-value=58 Score=36.96 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=23.4
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhh
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAF 992 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f 992 (1143)
=+|-.|+||||+. +|.+.=+|||.+-
T Consensus 176 HrDLKp~NILl~~-~g~ikL~DFGla~ 201 (396)
T 4dc2_A 176 YRDLKLDNVLLDS-EGHIKLTDYGMCK 201 (396)
T ss_dssp CCCCCGGGEEECT-TSCEEECCCTTCB
T ss_pred eccCCHHHEEECC-CCCEEEeecceee
Confidence 4799999999995 8999999999874
No 215
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=22.40 E-value=37 Score=37.04 Aligned_cols=27 Identities=30% Similarity=0.313 Sum_probs=23.8
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
=||-.|+||||+. +|.+.=+|||.+-.
T Consensus 138 H~Dikp~Nil~~~-~~~~kl~Dfg~a~~ 164 (325)
T 3kex_A 138 HRNLAARNVLLKS-PSQVQVADFGVADL 164 (325)
T ss_dssp CSCCSSTTEEESS-SSCEEECSCSGGGG
T ss_pred CCccchheEEECC-CCeEEECCCCcccc
Confidence 4899999999985 89999999998854
No 216
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=22.40 E-value=81 Score=35.12 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=19.4
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhcc
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFEQ 994 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~~ 994 (1143)
-||-.|+|||++. +|.+.=+|||.+-..
T Consensus 155 H~Dlkp~NIll~~-~~~~kL~DFG~a~~~ 182 (367)
T 2fst_X 155 HRDLKPSNLAVNE-DCELKILDFGLARHT 182 (367)
T ss_dssp CCCCCGGGEEECT-TCCEEECC-------
T ss_pred eCCCCHhhEEECC-CCCEEEeeccccccc
Confidence 4899999999995 899999999988543
No 217
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=22.28 E-value=33 Score=36.87 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=23.8
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
=||-+|+|||++. +|.+.=+|||.+..
T Consensus 134 H~Dlkp~Nil~~~-~~~~kl~Dfg~~~~ 160 (294)
T 4eqm_A 134 HRDIKPQNILIDS-NKTLKIFDFGIAKA 160 (294)
T ss_dssp CCCCCGGGEEECT-TSCEEECCCSSSTT
T ss_pred cCCCCHHHEEECC-CCCEEEEeCCCccc
Confidence 4899999999995 89999999998754
No 218
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=22.26 E-value=33 Score=38.25 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=23.8
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
=+|-.|+|||++. +|.+.=+|||.+-.
T Consensus 144 HrDlkp~NIll~~-~g~vkL~DFG~a~~ 170 (353)
T 2i0e_A 144 YRDLKLDNVMLDS-EGHIKIADFGMCKE 170 (353)
T ss_dssp CCCCCGGGEEECT-TSCEEECCCTTCBC
T ss_pred eccCCHHHEEEcC-CCcEEEEeCCcccc
Confidence 4799999999995 89999999998754
No 219
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=22.17 E-value=38 Score=36.09 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=21.3
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
=||-.|+|||++. +|.+.=+|||.+..
T Consensus 143 H~Dlkp~Nil~~~-~~~~kl~Dfg~~~~ 169 (289)
T 3og7_A 143 HRDLKSNNIFLHE-DNTVKIGDFGLATE 169 (289)
T ss_dssp CSCCCGGGEEEET-TTEEEECCCC----
T ss_pred cccCccceEEECC-CCCEEEccceeccc
Confidence 4899999999996 89999999998753
No 220
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=22.02 E-value=34 Score=36.80 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=23.8
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
=||-+|+|||++. +|.+.=+|||.+..
T Consensus 139 H~Dlkp~Nil~~~-~~~~kl~Dfg~~~~ 165 (297)
T 3fxz_A 139 HRDIKSDNILLGM-DGSVKLTDFGFCAQ 165 (297)
T ss_dssp CCCCSGGGEEECT-TCCEEECCCTTCEE
T ss_pred eCCCCHHHEEECC-CCCEEEeeCCCcee
Confidence 4899999999995 89999999998754
No 221
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=21.92 E-value=37 Score=36.01 Aligned_cols=27 Identities=26% Similarity=0.209 Sum_probs=19.4
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
-||-.|+|||++. +|.+.=+|||.+..
T Consensus 139 H~dlkp~Nil~~~-~~~~kl~Dfg~~~~ 165 (281)
T 1mp8_A 139 HRDIAARNVLVSS-NDCVKLGDFGLSRY 165 (281)
T ss_dssp CSCCSGGGEEEEE-TTEEEECC------
T ss_pred cccccHHHEEECC-CCCEEECccccccc
Confidence 4899999999996 89999999998743
No 222
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=21.58 E-value=3.7e+02 Score=30.89 Aligned_cols=66 Identities=12% Similarity=-0.067 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001139 360 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 433 (1143)
Q Consensus 360 ~~~wl~~a~laRk~g~~~~A~~aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~ 433 (1143)
...|...|.+..+.|+++.|...+.++.++.. ....+.+..|.++...|+.+.|+..++..+...+
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 105 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIELDK--------KYIKGYYRRAASNMALGKFRAALRDYETVVKVKP 105 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 56678889999999999999999988866531 1223457789999999999999999988776544
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=21.50 E-value=1.8e+02 Score=25.36 Aligned_cols=61 Identities=13% Similarity=-0.031 Sum_probs=40.3
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcchhhhHHHHHHhhchhhHHH
Q 001139 90 SQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLD 169 (1143)
Q Consensus 90 ~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gllrcL~~LG~~~~l~ 169 (1143)
.....+-..|+|.+|..+|+.+++..+.... .+ . ...+.+..+..|+..+|......
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~---~~-------------~-------~~~~i~~~L~~~~~~~g~~~~A~ 66 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEI---ST-------------I-------DKVSVLDYLSYAVYQQGDLDKAL 66 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---CS-------------S-------CHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCC---Cc-------------c-------cHHHHHHHHHHHHHHccCHHHHH
Confidence 3566788899999999999999986543100 00 0 02344566778888888876665
Q ss_pred HHHh
Q 001139 170 MYCK 173 (1143)
Q Consensus 170 ~~~~ 173 (1143)
.+.+
T Consensus 67 ~~~~ 70 (104)
T 2v5f_A 67 LLTK 70 (104)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 224
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=21.40 E-value=79 Score=34.75 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=22.2
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
=||-.|+|||++. +|.+.=+|||.+..
T Consensus 157 H~Dlkp~NIl~~~-~~~~kl~Dfg~~~~ 183 (362)
T 3pg1_A 157 HRDLHPGNILLAD-NNDITICDFNLARE 183 (362)
T ss_dssp CCCCCGGGEEECT-TCCEEECCTTC---
T ss_pred ecCCChHHEEEcC-CCCEEEEecCcccc
Confidence 5899999999995 89999999999854
No 225
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=21.31 E-value=36 Score=36.33 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=24.0
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
=||-.|+|||++. +|.+.=+|||.+..
T Consensus 124 H~dikp~Nil~~~-~~~~kl~Dfg~~~~ 150 (292)
T 3o0g_A 124 HRDLKPQNLLINR-NGELKLANFGLARA 150 (292)
T ss_dssp CCCCSGGGEEECT-TSCEEECCCTTCEE
T ss_pred cCCCCHHHEEEcC-CCCEEEeeccccee
Confidence 4899999999996 89999999998854
No 226
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=21.24 E-value=36 Score=37.13 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=23.6
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
=||-+|+|||++. +|.+.=+|||.+-.
T Consensus 164 H~Dlkp~NIll~~-~~~~kl~Dfg~~~~ 190 (321)
T 2c30_A 164 HRDIKSDSILLTL-DGRVKLSDFGFCAQ 190 (321)
T ss_dssp CCCCSGGGEEECT-TCCEEECCCTTCEE
T ss_pred cCCCCHHHEEECC-CCcEEEeeeeeeee
Confidence 4899999999995 89999999998643
No 227
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=21.11 E-value=91 Score=32.43 Aligned_cols=28 Identities=36% Similarity=0.336 Sum_probs=22.6
Q ss_pred cCCCCCCceEEec-------CCCeEEEeecchhhc
Q 001139 966 LGDRHAMNILIDQ-------ATAEVVHIDLGVAFE 993 (1143)
Q Consensus 966 lgDRh~~NIll~~-------~tG~v~hiDfg~~f~ 993 (1143)
=||=+|+|||++. .+|.+.=+|||.+..
T Consensus 131 H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~ 165 (271)
T 3dtc_A 131 HRDLKSSNILILQKVENGDLSNKILKITDFGLARE 165 (271)
T ss_dssp CSCCSGGGEEESSCCSSSCCSSCCEEECCCCC---
T ss_pred ecCCchHHEEEecccccccccCcceEEccCCcccc
Confidence 5899999999997 388999999998754
No 228
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=21.10 E-value=44 Score=36.54 Aligned_cols=28 Identities=29% Similarity=0.280 Sum_probs=24.5
Q ss_pred ccCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 965 GLGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 965 glgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
--||-.|+||||+. +|.+.=+|||.+..
T Consensus 194 vH~Dikp~NIll~~-~~~~kL~Dfg~~~~ 221 (344)
T 1rjb_A 194 VHRDLAARNVLVTH-GKVVKICDFGLARD 221 (344)
T ss_dssp EETTCSGGGEEEET-TTEEEECCCGGGSC
T ss_pred ccCCCChhhEEEcC-CCcEEeCCCccCcc
Confidence 35899999999995 89999999999854
No 229
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=20.99 E-value=39 Score=35.69 Aligned_cols=28 Identities=25% Similarity=0.178 Sum_probs=24.2
Q ss_pred ccCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 965 GLGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 965 glgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
-=||-+|+||+++. +|.+.=+|||.+..
T Consensus 142 ~H~dikp~Nili~~-~~~~kl~Dfg~~~~ 169 (283)
T 3gen_A 142 LHRDLAARNCLVND-QGVVKVSDFGLSRY 169 (283)
T ss_dssp CCSSCSGGGEEECT-TSCEEECSTTGGGG
T ss_pred cCCCCccceEEEcC-CCCEEEcccccccc
Confidence 34899999999995 99999999998853
No 230
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=20.98 E-value=54 Score=36.72 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=24.0
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
=||-.|+||||+. +|.+.=+|||.+..
T Consensus 214 H~Dlkp~NIll~~-~~~~kL~DFG~a~~ 240 (382)
T 3tt0_A 214 HRDLAARNVLVTE-DNVMKIADFGLARD 240 (382)
T ss_dssp CSCCCGGGEEECT-TCCEEECSCSCCCC
T ss_pred cCCCCcceEEEcC-CCcEEEcccCcccc
Confidence 4899999999995 89999999998854
No 231
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=20.80 E-value=38 Score=36.27 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=23.7
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
=||-+|+|||++. +|.+.=+|||.+-.
T Consensus 160 H~Dlkp~Nil~~~-~~~~kl~Dfg~~~~ 186 (298)
T 2zv2_A 160 HRDIKPSNLLVGE-DGHIKIADFGVSNE 186 (298)
T ss_dssp CCCCCGGGEEECT-TSCEEECCCTTCEE
T ss_pred ccCCCHHHEEECC-CCCEEEecCCCccc
Confidence 4899999999995 89999999998743
No 232
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=20.58 E-value=41 Score=36.19 Aligned_cols=28 Identities=29% Similarity=0.242 Sum_probs=24.2
Q ss_pred ccCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 965 GLGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 965 glgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
-=||-.|+|||++. +|.+.=+|||.+..
T Consensus 142 vH~Dlkp~Nil~~~-~~~~kl~Dfg~a~~ 169 (308)
T 3g33_A 142 VHRDLKPENILVTS-GGTVKLADFGLARI 169 (308)
T ss_dssp CCSCCCTTTEEECT-TSCEEECSCSCTTT
T ss_pred ccCCCCHHHEEEcC-CCCEEEeeCccccc
Confidence 34899999999995 89999999998743
No 233
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=20.58 E-value=87 Score=34.08 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=23.9
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
=+|-+|+|||++. +|.+.=+|||.+-.
T Consensus 129 HrDlkp~NIll~~-~g~~kL~Dfg~a~~ 155 (318)
T 1fot_A 129 YRDLKPENILLDK-NGHIKITDFGFAKY 155 (318)
T ss_dssp CCCCCGGGEEECT-TSCEEECCCSSCEE
T ss_pred ccCCChheEEEcC-CCCEEEeecCccee
Confidence 4799999999995 89999999998754
No 234
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=20.48 E-value=42 Score=36.41 Aligned_cols=25 Identities=40% Similarity=0.407 Sum_probs=22.7
Q ss_pred CCCCCCceEEecCCCeEEEeecchh
Q 001139 967 GDRHAMNILIDQATAEVVHIDLGVA 991 (1143)
Q Consensus 967 gDRh~~NIll~~~tG~v~hiDfg~~ 991 (1143)
.|--|+||||+..+|.+-=+|||.+
T Consensus 155 RDlKp~NILl~~~~g~vKl~DFGla 179 (290)
T 3fpq_A 155 RDLKCDNIFITGPTGSVKIGDLGLA 179 (290)
T ss_dssp CCCCGGGEEESSTTSCEEECCTTGG
T ss_pred cccChhheeEECCCCCEEEEeCcCC
Confidence 4888999999977999999999987
No 235
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=20.46 E-value=41 Score=37.31 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=23.8
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
=+|-.|+|||++. +|.+.=+|||.+-.
T Consensus 133 HrDlkp~NIll~~-~g~~kL~DFG~a~~ 159 (345)
T 3a8x_A 133 YRDLKLDNVLLDS-EGHIKLTDYGMCKE 159 (345)
T ss_dssp CCCCCGGGEEECT-TSCEEECCGGGCBC
T ss_pred ecCCCHHHEEECC-CCCEEEEecccccc
Confidence 3799999999995 89999999998753
No 236
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=20.40 E-value=67 Score=27.58 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=23.0
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhh
Q 001139 90 SQIVTLEHEGNWSKALEYYELQVRS 114 (1143)
Q Consensus 90 ~~i~~yE~~g~w~~Al~~Ye~~l~~ 114 (1143)
..+|.|.-+|+++.|+.+|+-.++.
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHH
Confidence 6789999999999999999999875
No 237
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=20.29 E-value=43 Score=35.71 Aligned_cols=28 Identities=29% Similarity=0.293 Sum_probs=24.3
Q ss_pred ccCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 965 GLGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 965 glgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
-=||-.|+|||++. +|.+.=+|||.+..
T Consensus 150 ~H~dikp~Nil~~~-~~~~kl~Dfg~a~~ 177 (298)
T 3f66_A 150 VHRDLAARNCMLDE-KFTVKVADFGLARD 177 (298)
T ss_dssp CCSCCSGGGEEECT-TCCEEECSCGGGCC
T ss_pred cCCCCchheEEECC-CCCEEECccccccc
Confidence 34899999999995 99999999998853
No 238
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=20.29 E-value=1e+02 Score=33.39 Aligned_cols=27 Identities=33% Similarity=0.289 Sum_probs=23.3
Q ss_pred ccCCCCCCceEEecCCCeEEEeecchhh
Q 001139 965 GLGDRHAMNILIDQATAEVVHIDLGVAF 992 (1143)
Q Consensus 965 glgDRh~~NIll~~~tG~v~hiDfg~~f 992 (1143)
-=||-+|+|||++. +|.+.=+|||.+.
T Consensus 146 vH~dlkp~Nil~~~-~~~~kl~Dfg~~~ 172 (331)
T 4aaa_A 146 IHRDIKPENILVSQ-SGVVKLCDFGFAR 172 (331)
T ss_dssp CCCCCCGGGEEECT-TSCEEECCCTTC-
T ss_pred EccCcChheEEEcC-CCcEEEEeCCCce
Confidence 34899999999995 8999999999874
No 239
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=20.26 E-value=37 Score=35.69 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=23.7
Q ss_pred ccCCCCCCceEEecCCCeEEEeecchhh
Q 001139 965 GLGDRHAMNILIDQATAEVVHIDLGVAF 992 (1143)
Q Consensus 965 glgDRh~~NIll~~~tG~v~hiDfg~~f 992 (1143)
-=||-+|+||+++. +|.+.=+|||.+-
T Consensus 128 ~H~dikp~Nil~~~-~~~~kl~Dfg~~~ 154 (269)
T 4hcu_A 128 IHRDLAARNCLVGE-NQVIKVSDFGMTR 154 (269)
T ss_dssp CCSCCCGGGEEECG-GGCEEECCTTGGG
T ss_pred ecCCcchheEEEcC-CCCEEeccccccc
Confidence 34899999999986 7999999999875
No 240
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=20.22 E-value=40 Score=37.60 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=24.8
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhccc
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFEQG 995 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~~~ 995 (1143)
=+|-.|+||||+. +|.+.=+|||.+-..+
T Consensus 217 HrDikp~NIll~~-~~~~kL~DFG~a~~~~ 245 (371)
T 3q60_A 217 HGHFTPDNLFIMP-DGRLMLGDVSALWKVG 245 (371)
T ss_dssp ETTCSGGGEEECT-TSCEEECCGGGEEETT
T ss_pred cCcCCHHHEEECC-CCCEEEEecceeeecC
Confidence 4799999999995 8999999999875443
No 241
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=20.20 E-value=38 Score=35.49 Aligned_cols=27 Identities=30% Similarity=0.234 Sum_probs=23.8
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
=||=+|+||+++. +|.+.=+|||.+..
T Consensus 127 H~dikp~Nil~~~-~~~~~l~Dfg~~~~ 153 (268)
T 3sxs_A 127 HRDLAARNCLVDR-DLCVKVSDFGMTRY 153 (268)
T ss_dssp ESSCSGGGEEECT-TCCEEECCTTCEEE
T ss_pred cCCcCcceEEECC-CCCEEEccCcccee
Confidence 4899999999995 89999999998753
No 242
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=20.05 E-value=39 Score=37.49 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.4
Q ss_pred cCCCCCCceEEecCCCeEEEeecchhh
Q 001139 966 LGDRHAMNILIDQATAEVVHIDLGVAF 992 (1143)
Q Consensus 966 lgDRh~~NIll~~~tG~v~hiDfg~~f 992 (1143)
=+|-.|+|||++. +|.+.=+|||.+-
T Consensus 141 HrDlkp~NIll~~-~g~vkL~DFG~a~ 166 (345)
T 1xjd_A 141 YRDLKLDNILLDK-DGHIKIADFGMCK 166 (345)
T ss_dssp CCCCCGGGEEECT-TSCEEECCCTTCB
T ss_pred eCCCChhhEEECC-CCCEEEeEChhhh
Confidence 4899999999995 8999999999874
No 243
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=20.01 E-value=56 Score=34.96 Aligned_cols=28 Identities=29% Similarity=0.221 Sum_probs=24.3
Q ss_pred ccCCCCCCceEEecCCCeEEEeecchhhc
Q 001139 965 GLGDRHAMNILIDQATAEVVHIDLGVAFE 993 (1143)
Q Consensus 965 glgDRh~~NIll~~~tG~v~hiDfg~~f~ 993 (1143)
--||-.|+|||++. +|.+.=+|||.+..
T Consensus 167 ~H~dlkp~Nil~~~-~~~~kl~Dfg~~~~ 194 (313)
T 1t46_A 167 IHRDLAARNILLTH-GRITKICDFGLARD 194 (313)
T ss_dssp CCSCCSGGGEEEET-TTEEEECCCGGGSC
T ss_pred ecCCCccceEEEcC-CCCEEEcccccccc
Confidence 35899999999995 89999999998754
Done!