Query 001141
Match_columns 1142
No_of_seqs 340 out of 1205
Neff 3.7
Searched_HMMs 46136
Date Thu Mar 28 16:55:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001141.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001141hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13901 DUF4206: Domain of un 100.0 2.7E-60 5.8E-65 492.4 8.2 200 867-1075 1-202 (202)
2 KOG1829 Uncharacterized conser 100.0 1.6E-58 3.5E-63 533.3 10.7 245 815-1078 318-566 (580)
3 KOG1259 Nischarin, modulator o 99.9 1.4E-23 3.1E-28 228.2 8.8 213 681-910 24-303 (490)
4 cd06870 PX_CISK The phosphoino 99.8 1.7E-19 3.6E-24 171.3 9.4 93 680-782 16-109 (109)
5 cd06861 PX_Vps5p The phosphoin 99.8 6.3E-19 1.4E-23 168.2 10.7 92 680-781 14-111 (112)
6 cd06872 PX_SNX19_like_plant Th 99.8 8.2E-19 1.8E-23 167.1 10.1 91 680-781 14-106 (107)
7 cd07282 PX_SNX2 The phosphoino 99.8 1.5E-18 3.3E-23 169.1 10.3 95 680-781 14-123 (124)
8 cd07286 PX_SNX18 The phosphoin 99.8 1.6E-18 3.5E-23 170.2 10.2 92 679-782 15-107 (127)
9 cd06898 PX_SNX10 The phosphoin 99.8 1.9E-18 4.1E-23 165.8 10.2 104 660-781 2-112 (113)
10 cd06877 PX_SNX14 The phosphoin 99.8 1.4E-18 3.1E-23 168.2 9.4 93 680-782 18-119 (119)
11 cd07280 PX_YPT35 The phosphoin 99.8 1.8E-18 3.9E-23 166.7 10.0 91 681-781 19-120 (120)
12 cd07279 PX_SNX20_21_like The p 99.8 2.4E-18 5.3E-23 163.9 10.0 92 680-781 14-111 (112)
13 cd07276 PX_SNX16 The phosphoin 99.8 2.5E-18 5.4E-23 163.5 9.5 91 682-782 18-110 (110)
14 cd06875 PX_IRAS The phosphoino 99.8 2.5E-18 5.3E-23 165.8 9.6 92 682-783 15-106 (116)
15 cd07281 PX_SNX1 The phosphoino 99.8 3E-18 6.5E-23 166.4 10.2 95 680-781 14-123 (124)
16 cd06878 PX_SNX25 The phosphoin 99.8 3.2E-18 7E-23 167.4 10.4 94 681-782 23-127 (127)
17 cd07301 PX_SNX21 The phosphoin 99.8 2.9E-18 6.2E-23 164.4 9.7 92 680-781 14-111 (112)
18 cd06860 PX_SNX7_30_like The ph 99.8 3.8E-18 8.2E-23 164.1 10.5 104 659-781 2-115 (116)
19 cd07295 PX_Grd19 The phosphoin 99.7 4E-18 8.6E-23 164.5 10.1 105 659-782 3-114 (116)
20 cd06867 PX_SNX41_42 The phosph 99.7 3.8E-18 8.2E-23 162.6 9.7 88 681-782 15-112 (112)
21 cd07285 PX_SNX9 The phosphoino 99.7 4.4E-18 9.6E-23 167.0 10.3 94 678-783 14-109 (126)
22 cd06865 PX_SNX_like The phosph 99.7 4.9E-18 1.1E-22 164.2 10.1 108 660-781 2-119 (120)
23 cd07293 PX_SNX3 The phosphoino 99.7 6.2E-18 1.3E-22 164.9 10.9 93 680-782 15-121 (123)
24 cd07283 PX_SNX30 The phosphoin 99.7 7E-18 1.5E-22 163.0 10.4 103 660-781 3-115 (116)
25 cd06863 PX_Atg24p The phosphoi 99.7 1.2E-17 2.6E-22 160.4 11.1 105 659-781 2-117 (118)
26 cd06866 PX_SNX8_Mvp1p_like The 99.7 9.6E-18 2.1E-22 159.1 10.1 87 683-781 17-104 (105)
27 cd07300 PX_SNX20 The phosphoin 99.7 9.2E-18 2E-22 161.6 10.0 93 680-782 14-112 (114)
28 cd07284 PX_SNX7 The phosphoino 99.7 1E-17 2.2E-22 162.0 10.1 103 660-781 3-115 (116)
29 cd06894 PX_SNX3_like The phosp 99.7 1.1E-17 2.4E-22 162.9 10.2 104 659-782 3-121 (123)
30 cd06862 PX_SNX9_18_like The ph 99.7 1.3E-17 2.8E-22 163.1 10.2 93 679-783 15-108 (125)
31 cd06873 PX_SNX13 The phosphoin 99.7 1.3E-17 2.9E-22 161.2 9.7 93 680-782 18-120 (120)
32 cd06893 PX_SNX19 The phosphoin 99.7 1.4E-17 2.9E-22 164.4 8.8 96 680-781 17-131 (132)
33 cd06859 PX_SNX1_2_like The pho 99.7 2.7E-17 5.8E-22 156.1 9.7 92 680-781 14-113 (114)
34 cd06897 PX_SNARE The phosphoin 99.7 2.5E-17 5.4E-22 154.9 9.3 91 682-781 13-107 (108)
35 cd07287 PX_RPK118_like The pho 99.7 3.1E-17 6.7E-22 159.2 9.9 93 682-781 15-117 (118)
36 cd07277 PX_RUN The phosphoinos 99.7 3.1E-17 6.7E-22 159.1 9.7 93 680-783 14-107 (118)
37 cd06864 PX_SNX4 The phosphoino 99.7 3.4E-17 7.5E-22 160.6 10.0 91 681-781 20-128 (129)
38 cd06881 PX_SNX15_like The phos 99.7 3.2E-17 6.9E-22 158.0 9.5 90 682-781 15-116 (117)
39 cd06880 PX_SNX22 The phosphoin 99.7 4.5E-17 9.8E-22 155.6 10.4 88 682-784 17-104 (110)
40 cd06871 PX_MONaKA The phosphoi 99.7 3.8E-17 8.2E-22 158.5 9.5 91 680-782 17-110 (120)
41 cd06868 PX_HS1BP3 The phosphoi 99.7 4.9E-17 1.1E-21 158.0 9.7 90 680-781 16-119 (120)
42 cd07294 PX_SNX12 The phosphoin 99.7 8.3E-17 1.8E-21 159.0 11.2 107 658-784 4-125 (132)
43 cd07288 PX_SNX15 The phosphoin 99.7 6.7E-17 1.5E-21 156.7 10.2 93 682-781 15-117 (118)
44 cd06882 PX_p40phox The phospho 99.7 1.3E-16 2.9E-21 155.5 8.9 95 679-783 15-119 (123)
45 cd06883 PX_PI3K_C2 The phospho 99.7 2.1E-16 4.5E-21 151.0 9.1 92 681-781 13-108 (109)
46 cd06876 PX_MDM1p The phosphoin 99.6 7.6E-16 1.6E-20 151.2 11.0 90 681-780 35-132 (133)
47 cd06879 PX_UP1_plant The phosp 99.6 6E-16 1.3E-20 154.0 10.3 89 684-782 44-138 (138)
48 cd06884 PX_PI3K_C2_68D The pho 99.6 6.1E-16 1.3E-20 148.9 9.6 106 657-781 1-110 (111)
49 cd06874 PX_KIF16B_SNX23 The ph 99.6 1.2E-15 2.6E-20 149.9 10.3 86 680-774 14-100 (127)
50 KOG2527 Sorting nexin SNX11 [I 99.6 2.8E-16 6.1E-21 154.4 5.0 121 643-784 6-132 (144)
51 cd06886 PX_SNX27 The phosphoin 99.6 1.2E-15 2.6E-20 145.3 8.7 86 682-781 19-105 (106)
52 cd06895 PX_PLD The phosphoinos 99.6 4.5E-15 9.7E-20 148.1 10.7 101 681-782 20-140 (140)
53 smart00312 PX PhoX homologous 99.6 3.1E-15 6.7E-20 137.6 8.3 90 681-780 11-105 (105)
54 cd06885 PX_SNX17_31 The phosph 99.6 2.9E-15 6.2E-20 142.1 8.3 88 680-781 14-102 (104)
55 cd06869 PX_UP2_fungi The phosp 99.6 1E-14 2.2E-19 142.0 10.2 87 679-781 28-118 (119)
56 cd06093 PX_domain The Phox Hom 99.5 4.3E-14 9.3E-19 128.3 10.7 91 680-780 13-105 (106)
57 cd06888 PX_FISH The phosphoino 99.5 4.6E-14 1E-18 137.5 10.5 109 657-781 1-118 (119)
58 PF00787 PX: PX domain; Inter 99.5 1.6E-14 3.6E-19 132.4 6.9 90 683-782 18-113 (113)
59 cd07296 PX_PLD1 The phosphoino 99.5 6.3E-14 1.4E-18 139.2 9.3 117 655-782 6-135 (135)
60 cd06887 PX_p47phox The phospho 99.5 9.5E-14 2.1E-18 135.3 10.3 104 658-782 2-116 (118)
61 cd06890 PX_Bem1p The phosphoin 99.4 5.1E-13 1.1E-17 128.2 8.6 93 682-781 12-111 (112)
62 cd07290 PX_PI3K_C2_beta The ph 99.4 7.9E-13 1.7E-17 127.4 9.4 91 682-781 14-108 (109)
63 cd06891 PX_Vps17p The phosphoi 99.4 7.2E-13 1.6E-17 132.6 9.0 89 683-781 43-139 (140)
64 cd07289 PX_PI3K_C2_alpha The p 99.4 9.1E-13 2E-17 127.0 8.9 90 682-781 14-108 (109)
65 KOG2528 Sorting nexin SNX9/SH3 99.3 1.1E-12 2.4E-17 148.6 5.4 96 675-782 196-292 (490)
66 cd07291 PX_SNX5 The phosphoino 99.3 5E-12 1.1E-16 126.1 8.8 98 682-781 14-140 (141)
67 cd06892 PX_SNX5_like The phosp 99.3 4.1E-12 9E-17 127.2 7.8 99 682-781 14-140 (141)
68 cd07292 PX_SNX6 The phosphoino 99.3 1.5E-11 3.2E-16 122.8 9.5 96 683-781 15-140 (141)
69 cd07297 PX_PLD2 The phosphoino 99.2 1E-10 2.2E-15 115.4 9.3 95 685-782 24-130 (130)
70 KOG2273 Membrane coat complex 99.1 1.5E-10 3.3E-15 134.7 11.3 95 679-783 123-228 (503)
71 cd06889 PX_NoxO1 The phosphoin 99.0 1.3E-09 2.8E-14 107.1 10.1 94 682-781 17-120 (121)
72 cd06896 PX_PI3K_C2_gamma The p 98.6 9.5E-08 2.1E-12 91.2 7.5 84 686-780 14-99 (101)
73 COG5391 Phox homology (PX) dom 98.4 4.1E-07 8.8E-12 107.8 8.0 83 681-773 148-244 (524)
74 KOG2101 Intermediate filament- 98.0 8.2E-06 1.8E-10 92.1 6.6 84 680-765 131-222 (362)
75 KOG0905 Phosphoinositide 3-kin 97.4 0.00032 6.9E-09 88.1 8.4 112 652-782 1370-1485(1639)
76 KOG3784 Sorting nexin protein 97.4 0.00031 6.8E-09 80.6 7.4 91 680-784 13-104 (407)
77 cd07298 PX_RICS The phosphoino 96.9 0.0036 7.8E-08 61.6 7.9 85 683-780 26-114 (115)
78 cd07278 PX_RICS_like The phosp 96.2 0.018 3.9E-07 56.7 7.9 86 682-780 24-113 (114)
79 cd07299 PX_TCGAP The phosphoin 96.2 0.018 4E-07 56.5 7.9 86 682-780 23-112 (113)
80 KOG4773 NADPH oxidase [Energy 95.5 0.024 5.3E-07 64.8 6.5 92 680-781 34-136 (386)
81 PF14446 Prok-RING_1: Prokaryo 95.3 0.011 2.3E-07 51.8 2.3 41 1019-1067 4-44 (54)
82 KOG1660 Sorting nexin SNX6/TFA 77.7 3.7 8.1E-05 47.8 5.6 101 687-789 42-170 (399)
83 PF00130 C1_1: Phorbol esters/ 75.8 3.6 7.8E-05 34.6 3.7 41 1019-1066 10-51 (53)
84 KOG2114 Vacuolar assembly/sort 72.0 1.3 2.8E-05 56.0 0.2 37 1049-1086 858-895 (933)
85 PLN02866 phospholipase D 71.9 6.3 0.00014 51.5 6.1 98 684-783 32-172 (1068)
86 smart00249 PHD PHD zinc finger 62.2 7.6 0.00017 30.5 2.7 28 1028-1061 4-31 (47)
87 smart00109 C1 Protein kinase C 58.4 5.3 0.00012 32.3 1.3 36 1019-1062 10-45 (49)
88 cd00029 C1 Protein kinase C co 57.2 7.5 0.00016 31.8 1.9 37 1019-1062 10-46 (50)
89 COG3357 Predicted transcriptio 50.4 7.4 0.00016 38.0 1.0 77 971-1074 12-88 (97)
90 KOG1329 Phospholipase D1 [Lipi 49.0 13 0.00028 47.9 3.0 98 682-782 64-164 (887)
91 PF13639 zf-RING_2: Ring finge 46.3 10 0.00022 31.0 1.1 27 1042-1069 14-44 (44)
92 PF00628 PHD: PHD-finger; Int 45.4 20 0.00042 29.9 2.7 28 1028-1061 4-31 (51)
93 COG2174 RPL34A Ribosomal prote 43.3 12 0.00026 36.5 1.2 46 836-882 33-79 (93)
94 PTZ00303 phosphatidylinositol 37.2 28 0.0006 44.6 3.2 69 838-914 461-532 (1374)
95 COG3364 Zn-ribbon containing p 36.9 12 0.00025 37.4 0.1 29 1045-1073 3-31 (112)
96 cd03031 GRX_GRX_like Glutaredo 36.7 35 0.00076 35.5 3.4 75 968-1052 62-141 (147)
97 PF01363 FYVE: FYVE zinc finge 33.7 38 0.00083 30.0 2.8 61 835-911 7-67 (69)
98 PRK00398 rpoP DNA-directed RNA 33.1 23 0.00051 29.6 1.3 8 1045-1052 22-29 (46)
99 PF05591 DUF770: Protein of un 32.5 34 0.00073 36.2 2.6 44 923-966 97-143 (157)
100 KOG4628 Predicted E3 ubiquitin 31.7 31 0.00067 40.7 2.4 41 1021-1070 230-275 (348)
101 COG5219 Uncharacterized conser 28.7 20 0.00044 46.6 0.2 26 1044-1069 1488-1519(1525)
102 PF12861 zf-Apc11: Anaphase-pr 27.9 36 0.00078 32.9 1.7 51 1011-1070 22-79 (85)
103 COG5540 RING-finger-containing 27.6 28 0.00061 40.4 1.1 71 975-1069 291-368 (374)
104 PF07975 C1_4: TFIIH C1-like d 27.4 41 0.0009 29.7 1.8 27 1043-1069 20-50 (51)
105 KOG1842 FYVE finger-containing 25.6 34 0.00073 41.5 1.3 138 839-1008 182-338 (505)
106 PF13831 PHD_2: PHD-finger; PD 25.4 40 0.00086 27.5 1.3 18 1043-1060 3-20 (36)
107 PF08746 zf-RING-like: RING-li 24.6 41 0.00089 28.3 1.3 24 1045-1068 12-43 (43)
108 COG1545 Predicted nucleic-acid 24.6 40 0.00087 34.7 1.5 24 1044-1071 29-52 (140)
109 PRK04023 DNA polymerase II lar 24.5 52 0.0011 43.5 2.7 45 1011-1072 627-673 (1121)
110 PF08271 TF_Zn_Ribbon: TFIIB z 24.1 57 0.0012 27.0 2.0 34 1021-1059 1-34 (43)
111 PF11793 FANCL_C: FANCL C-term 23.6 33 0.00072 31.4 0.6 19 1043-1061 19-39 (70)
112 COG3516 Predicted component of 23.3 67 0.0015 34.5 2.8 39 929-967 110-150 (169)
113 COG4416 Com Mu-like prophage p 22.4 23 0.0005 31.8 -0.6 34 1043-1076 3-38 (60)
114 TIGR03358 VI_chp_5 type VI sec 21.6 63 0.0014 34.4 2.3 39 928-966 104-144 (159)
115 PF00412 LIM: LIM domain; Int 21.6 28 0.00061 29.3 -0.2 36 831-882 20-55 (58)
116 TIGR03826 YvyF flagellar opero 21.2 62 0.0013 33.7 2.0 26 1045-1073 4-29 (137)
117 PF09845 DUF2072: Zn-ribbon co 20.9 37 0.00079 35.2 0.4 29 1045-1073 2-30 (131)
118 PF03107 C1_2: C1 domain; Int 20.7 68 0.0015 24.9 1.7 29 1021-1058 1-29 (30)
119 COG1439 Predicted nucleic acid 20.5 53 0.0012 35.6 1.5 23 1045-1071 140-162 (177)
120 COG1107 Archaea-specific RecJ- 20.4 62 0.0013 40.6 2.2 51 1004-1070 48-103 (715)
121 cd00162 RING RING-finger (Real 20.3 63 0.0014 24.8 1.5 27 1044-1070 12-43 (45)
No 1
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=100.00 E-value=2.7e-60 Score=492.39 Aligned_cols=200 Identities=38% Similarity=0.802 Sum_probs=189.5
Q ss_pred ccccccCceecCCCCCCCccccccceeecccCcccccchhHHHHHHHhhcCccccccccCcccccccHHHHHHHHHHHHH
Q 001141 867 RLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTRYPVSQLAKSFLDSVYNQPMLCVSAVNPLLYSKVPALQHVMGVRKKI 946 (1142)
Q Consensus 867 RlC~YtGkYYCs~CH~ndtsVIPARVLhnWDFS~ypVS~iAk~fL~~i~sqPLinL~~lNP~LYs~V~eL~~Ir~LRkqL 946 (1142)
|+|+|+|+|||+.|||++++|||||||++|||++||||+.|++||.++|++|+|+|.++||.||.+|++|.+++.||++|
T Consensus 1 R~C~Y~G~yyC~~CH~~~~~vIParil~~WDf~~~pVs~~a~~~L~~~~~~Pl~~i~~~np~ly~~v~~L~~v~~lR~~L 80 (202)
T PF13901_consen 1 RFCDYTGKYYCSSCHWNDTSVIPARILHNWDFRPYPVSRFAKQFLDQIWSKPLINIEALNPSLYSHVKELRKVRELREQL 80 (202)
T ss_pred CccCCCCCcCCCCCCCCCceeccHHHHHhcCCCccHHHHHHHHHHHHhccCCEeeHHHhCHHHHHHhHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhcccc-CCcchHHHHhhc-CCCCccccCCccccHhHHhhccCCCCcchhHHHHHHHHHHhhhhcccccccccCccccc
Q 001141 947 GSMLPYV-RCPFRRSINKGL-GSRRYLLESNDFFALRDLIDLSKGPFAALPAMVETVSKKILVHITEQCLICCDVGVPCC 1024 (1142)
Q Consensus 947 ~~Mk~YL-rC~~a~sL~k~L-~~R~HLLEd~dlYSL~DLidV~sG~L~~Lp~lLe~l~~~~~~HI~~~CeLCq~KGFICE 1024 (1142)
.+|++|+ +|+.+..+...+ +.|.||++++|+|||+||++|++|+|.+ .|+.+.+.+.+||+ +|++|++|||+||
T Consensus 81 ~~l~~yl~~C~~~~~~~~~~~~~~~hl~~~~~~YSl~DL~~v~~G~L~~---~L~~l~~~~~~HV~-~C~lC~~kGfiCe 156 (202)
T PF13901_consen 81 SLLKDYLRTCRSADSLKLQLRQPRDHLLEDPHLYSLADLVQVKSGQLLP---QLEKLVQFAEKHVY-SCELCQQKGFICE 156 (202)
T ss_pred HHHHHHHHhChHHHHHHhhhccchhhhhhCCceEcHHHHHHHhhchHHH---HHHHHHHHHHHHHH-HhHHHHhCCCCCc
Confidence 9999998 699887666544 7899999999999999999999999875 47899999999996 9999999999999
Q ss_pred cccCCCCCCCeeeccCCCceeecccccceechhhhcCCCCCCchhhhhHHH
Q 001141 1025 ARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKLTSCSCGTSLVVET 1075 (1142)
Q Consensus 1025 ~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k~~~CPkCaRlr~~k 1075 (1142)
+|+++ ++|||||+++|++|++|++|||+.||.+ ..||||+|++.||
T Consensus 157 ---~C~~~-~~IfPF~~~~~~~C~~C~~v~H~~C~~~-~~CpkC~R~~~r~ 202 (202)
T PF13901_consen 157 ---ICNSD-DIIFPFQIDTTVRCPKCKSVFHKSCFRK-KSCPKCARRQKRK 202 (202)
T ss_pred ---cCCCC-CCCCCCCCCCeeeCCcCccccchhhcCC-CCCCCcHhHhccC
Confidence 89974 9999999999999999999999999997 7899999999875
No 2
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-58 Score=533.32 Aligned_cols=245 Identities=36% Similarity=0.759 Sum_probs=227.6
Q ss_pred CccEEEEEeCCcchhhhHhhccccccccccccccCCchhhhhhHhhcCCCCcccccccCceecCCCCCCCccccccceee
Q 001141 815 KTISLVVEIRPHRSMKQMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLH 894 (1142)
Q Consensus 815 s~~qLifEIsPfKSleqgL~sQ~yrCAgC~~~Ii~GltsLRdfLktLsv~k~RlC~YtGkYYCs~CH~ndtsVIPARVLh 894 (1142)
.+.+++|+++|.+++++||++|+|+||+|++.|.. ..|.++|+|+|+|+|||+.||+++.++|||||||
T Consensus 318 ~r~~~i~~~~~~~~re~gL~aQ~~~CAgC~~~i~~-----------~~~~~~R~C~y~G~y~C~~Ch~~~~svIPARVl~ 386 (580)
T KOG1829|consen 318 PRCQIIFHIHPAIPREKGLDAQNFRCAGCGHTIGP-----------DLEQRPRLCRYLGKYFCDCCHQNDKSVIPARVLH 386 (580)
T ss_pred chhhhhhhcccCcchhhhhhccCceecccCCCccc-----------ccccchhHhhhhhhhhCchhcccCccccccccee
Confidence 36899999999999999999999999999998752 3578899999999999999999999999999999
Q ss_pred cccCcccccchhHHHHHHHhhcCccccccccCcccccccHHHHHHHHHHHHHHhhcccc-CCcch--HHHHhhcCCCCcc
Q 001141 895 HWDFTRYPVSQLAKSFLDSVYNQPMLCVSAVNPLLYSKVPALQHVMGVRKKIGSMLPYV-RCPFR--RSINKGLGSRRYL 971 (1142)
Q Consensus 895 nWDFS~ypVS~iAk~fL~~i~sqPLinL~~lNP~LYs~V~eL~~Ir~LRkqL~~Mk~YL-rC~~a--~sL~k~L~~R~HL 971 (1142)
+|||++|+||++|++||.+||.+|+|+|..+||.||.+++.|.++++||+||.+|+.|+ +|+++ ..+.+++..|+||
T Consensus 387 ~WDf~~y~Vs~~a~~~L~~ir~~Pl~~~q~ln~~Ly~~~~~L~~v~~lR~qL~~m~~~l~~Cr~a~~~~~~~~~~~~~yL 466 (580)
T KOG1829|consen 387 NWDFTKYPVSNFAKQFLDEIREQPLFNLQDLNPDLYSKVKALAEVKELRQQLQHIEGYLKTCRFASLKLLRQRLAVRRYL 466 (580)
T ss_pred cccCcccccchhHHHHHHHHhccchhhhcccChHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999998 69987 5677789999999
Q ss_pred ccCCccccHhHHhhccCCCCcchhHHHHHHHHHHhhhhcccccccccCccccccccCCCCCCCeeeccCCCceeeccccc
Q 001141 972 LESNDFFALRDLIDLSKGPFAALPAMVETVSKKILVHITEQCLICCDVGVPCCARQACDDPSSLIFTFQEGEVERCKSCE 1051 (1142)
Q Consensus 972 LEd~dlYSL~DLidV~sG~L~~Lp~lLe~l~~~~~~HI~~~CeLCq~KGFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~ 1051 (1142)
++++|+|||+||++|.+|.|.. .|+.+.+...+||+ .|.+|.++||||| +|+. ++|||||+.++|.+|..|+
T Consensus 467 ~e~~~~~Sl~DL~~i~~g~L~~---~l~~~~k~~~~HV~-~C~lC~~~gfiCe---~Cq~-~~iiyPF~~~~~~rC~~C~ 538 (580)
T KOG1829|consen 467 TESPHLFSLKDLQDIQDGALLR---LLNELTKLSSKHVK-ECDLCTGKGFICE---LCQH-NDIIYPFETRNTRRCSTCL 538 (580)
T ss_pred ccCchhhhhhhHHHhhcccHHH---HHHHHHHHhhhhhh-hchhhccCeeeee---eccC-CCcccccccccceeHHHHH
Confidence 9999999999999999998764 58999999999996 7999999999999 7975 6899999999999999999
Q ss_pred ceechhhhcCCC-CCCchhhhhHHHhhh
Q 001141 1052 AVFHKPCFKKLT-SCSCGTSLVVETAVN 1078 (1142)
Q Consensus 1052 SVFHk~Cf~k~~-~CPkCaRlr~~k~~~ 1078 (1142)
+|||+.||+... .||||+|+|.|+...
T Consensus 539 avfH~~C~~r~s~~CPrC~R~q~r~~~~ 566 (580)
T KOG1829|consen 539 AVFHKKCLRRKSPCCPRCERRQKRAEQG 566 (580)
T ss_pred HHHHHHHHhccCCCCCchHHHHHHhhcc
Confidence 999999998654 599999998876543
No 3
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.89 E-value=1.4e-23 Score=228.22 Aligned_cols=213 Identities=23% Similarity=0.261 Sum_probs=173.5
Q ss_pred ccccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCcccccccccccCCCCHHHHHHHHHHHHHHHH
Q 001141 681 VKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQ 760 (1142)
Q Consensus 681 vksYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~~l~LP~~p~sV~K~PKKlfGn~speFIEeRRk~LE~YLq 760 (1142)
+..||+|.|+|+.|..+|+|.|||+||..||++|.......+-.|| |||++|+..+.|+|+|+++||.|||
T Consensus 24 ~~~~t~y~i~v~~g~~ew~v~~ry~df~~lheklv~e~~i~k~llp---------pkk~ig~~~~s~~e~r~~~leiylq 94 (490)
T KOG1259|consen 24 SGGVTYYDIKVRVGKVEWLVERRYRDFANLHEKLVGEISISKKLLP---------PKKLVGNKQPSFLEQRREQLEIYLQ 94 (490)
T ss_pred cCceEEEEEEEEecceeeeehhhhhHHHHHHHHhhhhheeccccCC---------chhhcCCCChhHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999965444444688 7999999999999999999999999
Q ss_pred HHHhcCCCCCCccccccccccc--------------------------cccCCCC--------CCCCCCCCCccCCCCCC
Q 001141 761 SILHSSSFSSPPNALITFLSQQ--------------------------ESLRNSP--------ASNPLVSGYTSFAKGTD 806 (1142)
Q Consensus 761 ~LL~h~~~Ls~S~vL~eFLe~s--------------------------~sf~~SP--------rLklpvP~~~s~d~g~D 806 (1142)
.++.. +.--.|+++.+||+++ +.|..+| +|++|+|++.+.+.++|
T Consensus 95 ~ll~~-f~~~~pr~la~fl~f~~y~i~~~~~~la~~~~e~g~~ll~~~~~~~~~~l~~yaise~l~~~~p~~~~~~~k~d 173 (490)
T KOG1259|consen 95 ELLIY-FRTELPRALAEFLDFNKYDIIYLLQDLAKLFNESGDALLSSKKEYNLSALEVYAISERLSLPCPPSLDRGGKYD 173 (490)
T ss_pred HHHHH-ccccCHHHHHHHhccchHHHHHHHHHHHHHHHhhhHHHhccCceecccchhhhhHHHHhcCCCCCccCCCCccc
Confidence 99994 5567889999999987 2355555 99999999999999999
Q ss_pred cccc----------------cccCC----ccEEEEEeCCcchhhhHhhccccccccccccccCCchhhhhhHhhcCCCCc
Q 001141 807 AENM----------------SALGK----TISLVVEIRPHRSMKQMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKP 866 (1142)
Q Consensus 807 ~ghI----------------s~lGs----~~qLifEIsPfKSleqgL~sQ~yrCAgC~~~Ii~GltsLRdfLktLsv~k~ 866 (1142)
++|+ +++|+ ++.|+|+++.||+++++.++. |.+.-+.|+..++-+++|+.++..
T Consensus 174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~------~~~~~i~~~~~~kptl~t~~v~~s 247 (490)
T KOG1259|consen 174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSA------LSTENIVDIELLKPTLQTICVHNT 247 (490)
T ss_pred hHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeec------cchhheeceeecCchhheeeeecc
Confidence 9999 66665 689999999999999998764 566777789999999999998774
Q ss_pred ccccccCcee----------cCCCCCC--Cccccc-cceeecccCcccccchhHHHH
Q 001141 867 RLCEYTGQLF----------CSTCHTN--ETAVLP-ARVLHHWDFTRYPVSQLAKSF 910 (1142)
Q Consensus 867 RlC~YtGkYY----------Cs~CH~n--dtsVIP-ARVLhnWDFS~ypVS~iAk~f 910 (1142)
..- +...+. -..--.+ .+.++| |..|...|++.|.|+.++.+.
T Consensus 248 ~~~-~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESv 303 (490)
T KOG1259|consen 248 TIQ-DVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESV 303 (490)
T ss_pred ccc-ccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhh
Confidence 322 222222 1111111 455666 799999999999999998764
No 4
>cd06870 PX_CISK The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Cytokine-independent survival kinase (CISK), also called Serum- and Glucocorticoid-induced Kinase 3 (SGK3), plays a role in cell growth and survival. It is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. CISK/SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. N-terminal to a catalytic kinase domain, CISK contains a PX domain which binds highly phosphorylated PIs, directs membrane localization, and regulates the enzyme's activity.
Probab=99.79 E-value=1.7e-19 Score=171.30 Aligned_cols=93 Identities=29% Similarity=0.515 Sum_probs=85.2
Q ss_pred cccccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCcccccccccccC-CCCHHHHHHHHHHHHHH
Q 001141 680 GVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFG-NVSPLVVAHRSVLIQEC 758 (1142)
Q Consensus 680 GvksYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~~l~LP~~p~sV~K~PKKlfG-n~speFIEeRRk~LE~Y 758 (1142)
..+.||+|.|+|+.++..|.|+||||||.+||++|++.||...++|| +|+++| +++++||++||++||.|
T Consensus 16 ~~~~~~~Y~I~v~~~~~~~~v~RRYseF~~L~~~L~~~~~~~~~~lP---------~K~~~~~~~~~~~ie~Rr~~Le~f 86 (109)
T cd06870 16 KKKRFTVYKVVVSVGRSSWFVFRRYAEFDKLYESLKKQFPASNLKIP---------GKRLFGNNFDPDFIKQRRAGLDEF 86 (109)
T ss_pred CCCCeEEEEEEEEECCeEEEEEeehHHHHHHHHHHHHHCcccCcCCC---------CCcccccCCCHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999998767888 599999 89999999999999999
Q ss_pred HHHHHhcCCCCCCccccccccccc
Q 001141 759 LQSILHSSSFSSPPNALITFLSQQ 782 (1142)
Q Consensus 759 Lq~LL~h~~~Ls~S~vL~eFLe~s 782 (1142)
|+.|++| +.+.+++.+++||+++
T Consensus 87 L~~ll~~-p~l~~s~~~~~FL~~~ 109 (109)
T cd06870 87 IQRLVSD-PKLLNHPDVRAFLQMD 109 (109)
T ss_pred HHHHhCC-HhhhcChHHHHHhCcC
Confidence 9999997 4678899999999863
No 5
>cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P
Probab=99.78 E-value=6.3e-19 Score=168.24 Aligned_cols=92 Identities=25% Similarity=0.358 Sum_probs=81.5
Q ss_pred cccccEEEEEEEEeC-----CceEEEEeecccHHHHHHHHHhhcccCCC-CCCCCCcccccccccccCCCCHHHHHHHHH
Q 001141 680 GVKEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSVEKESRKIFGNVSPLVVAHRSV 753 (1142)
Q Consensus 680 GvksYTVY~I~Vksg-----~~eWtV~RRYSDF~~LHqrLke~fp~~~l-~LP~~p~sV~K~PKKlfGn~speFIEeRRk 753 (1142)
+.++||+|+|++++. ...|+|+|||+||.|||++|++.||...+ +|| +|+++|+++++|||+||+
T Consensus 14 ~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~iP~lP---------~K~~~~~~~~~fie~Rr~ 84 (112)
T cd06861 14 LTSAHTVYTVRTRTTSPNFEVSSFSVLRRYRDFRWLYRQLQNNHPGVIVPPPP---------EKQSVGRFDDNFVEQRRA 84 (112)
T ss_pred CccCeEEEEEEEEeCCCCCCCCccEEEeehHHHHHHHHHHHHHCCCCccCCCC---------CcccccCCCHHHHHHHHH
Confidence 467999999999874 35899999999999999999999887643 555 588899999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcccccccccc
Q 001141 754 LIQECLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 754 ~LE~YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
+||.||+.|++|+ .++++.+|+.||+.
T Consensus 85 ~Le~fL~~i~~~p-~l~~s~~~~~FL~~ 111 (112)
T cd06861 85 ALEKMLRKIANHP-VLQKDPDFRLFLES 111 (112)
T ss_pred HHHHHHHHHHCCc-ccccCcHHHHhcCC
Confidence 9999999999985 68999999999975
No 6
>cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized plant proteins containing an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some sorting nexins (SNXs). This is the same domain architecture found in SNX19. SNX13 and SNX14 also contain these three domains but also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction dom
Probab=99.77 E-value=8.2e-19 Score=167.08 Aligned_cols=91 Identities=29% Similarity=0.555 Sum_probs=80.0
Q ss_pred cccccEEEEEEEEeC-CceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCccccccccccc-CCCCHHHHHHHHHHHHH
Q 001141 680 GVKEYTVYKIRVWSG-KDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIF-GNVSPLVVAHRSVLIQE 757 (1142)
Q Consensus 680 GvksYTVY~I~Vksg-~~eWtV~RRYSDF~~LHqrLke~fp~~~l~LP~~p~sV~K~PKKlf-Gn~speFIEeRRk~LE~ 757 (1142)
|.+.||+|.|+|..+ ...|+|.||||||.+||++|++ ++...++|| ||+++ ++++++|||+||.+||.
T Consensus 14 ~~~~y~vY~I~v~~~~~~~w~v~RRYsdF~~L~~~L~~-~~~~~~~lP---------~K~~~~~~~~~~fie~Rr~~Le~ 83 (107)
T cd06872 14 GSKSFAVYSVAVTDNENETWVVKRRFRNFETLHRRLKE-VPKYNLELP---------PKRFLSSSLDGAFIEERCKLLDK 83 (107)
T ss_pred CCccEEEEEEEEEECCCceEEEEehHHHHHHHHHHHHh-ccCCCCCCC---------CccccCCCCCHHHHHHHHHHHHH
Confidence 567899999999875 6799999999999999999997 455455778 58888 68999999999999999
Q ss_pred HHHHHHhcCCCCCCcccccccccc
Q 001141 758 CLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 758 YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
||+.|++++ .+..++.|++||..
T Consensus 84 yL~~l~~~p-~i~~s~~~~~FL~~ 106 (107)
T cd06872 84 YLKDLLVIE-KVAESHEVWSFLSA 106 (107)
T ss_pred HHHHHhcCh-hhhcCHHHHHHhcc
Confidence 999999975 67999999999964
No 7
>cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sort
Probab=99.76 E-value=1.5e-18 Score=169.11 Aligned_cols=95 Identities=24% Similarity=0.414 Sum_probs=79.2
Q ss_pred cccccEEEEEEEEeC-----CceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCcccccccccccCC----------CC
Q 001141 680 GVKEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGN----------VS 744 (1142)
Q Consensus 680 GvksYTVY~I~Vksg-----~~eWtV~RRYSDF~~LHqrLke~fp~~~l~LP~~p~sV~K~PKKlfGn----------~s 744 (1142)
|.+.||+|.|++++. ...|.|+|||+||.|||+.|++.|+..+..+|+.| +|++++. ++
T Consensus 14 g~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~g~~iPplP------~K~~~~~~~~~~~~~~~~~ 87 (124)
T cd07282 14 GMNAYMAYRVTTKTSLSMFSRSEFSVRRRFSDFLGLHSKLASKYLHVGYIVPPAP------EKSIVGMTKVKVGKEDSSS 87 (124)
T ss_pred CccCeEEEEEEeccCCCccCCCceEEEEehHHHHHHHHHHHHhCCCCCceeCCCC------CCccccccccccccccccC
Confidence 678999999999863 46899999999999999999999976543334322 4776653 58
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccc
Q 001141 745 PLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 745 peFIEeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
++|||+||++||.||++|++|+ .+..+..|+.||+.
T Consensus 88 ~~fie~Rr~~Le~fL~~i~~~p-~l~~s~~~~~FL~~ 123 (124)
T cd07282 88 TEFVEKRRAALERYLQRTVKHP-TLLQDPDLRQFLES 123 (124)
T ss_pred HHHHHHHHHHHHHHHHHHhcCc-ccccChHHHHhhcC
Confidence 9999999999999999999985 57888999999984
No 8
>cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficki
Probab=99.76 E-value=1.6e-18 Score=170.22 Aligned_cols=92 Identities=22% Similarity=0.289 Sum_probs=82.4
Q ss_pred ecccccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCCHHHHHHHHHHHHH
Q 001141 679 VGVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQE 757 (1142)
Q Consensus 679 vGvksYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~~-l~LP~~p~sV~K~PKKlfGn~speFIEeRRk~LE~ 757 (1142)
.|+++|++|+|++.. ..|.|.|||+||.|||..|.+.||... ++|| +|+++|+++++||++||++||.
T Consensus 15 ~G~~~Yv~Y~I~~~~--~~~~V~RRYsDF~~L~~~L~~~~p~~~IPpLP---------~K~~~g~f~~~FIe~Rr~~Lq~ 83 (127)
T cd07286 15 KGMKSYISYKLVPSH--TGLQVHRRYKHFDWLYARLAEKFPVISVPHIP---------EKQATGRFEEDFISKRRKGLIW 83 (127)
T ss_pred CCCcCEEEEEEEEec--CceEEECCCcHHHHHHHHHHHHCCCcEeCCCc---------CCCcCCCCCHHHHHHHHHHHHH
Confidence 488999999998754 569999999999999999999998764 3677 4899999999999999999999
Q ss_pred HHHHHHhcCCCCCCccccccccccc
Q 001141 758 CLQSILHSSSFSSPPNALITFLSQQ 782 (1142)
Q Consensus 758 YLq~LL~h~~~Ls~S~vL~eFLe~s 782 (1142)
||++|++|+ .+..+..|+.||+.+
T Consensus 84 FL~ria~hp-~L~~s~~~~~FL~~~ 107 (127)
T cd07286 84 WMDHMCSHP-VLARCDAFQHFLTCP 107 (127)
T ss_pred HHHHHHcCc-ccccChHHHHHhcCC
Confidence 999999984 578889999999975
No 9
>cd06898 PX_SNX10 The phosphoinositide binding Phox Homology domain of Sorting Nexin 10. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX10 may be involved in the regulation of endosome homeostasis. Its expression induces the formation of giant vacuoles in mammalian cells.
Probab=99.76 E-value=1.9e-18 Score=165.81 Aligned_cols=104 Identities=28% Similarity=0.382 Sum_probs=86.8
Q ss_pred EEEeccccccCCcccccceecccccEEEEEEEEeCC-----ceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccc
Q 001141 660 VEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGK-----DQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVE 733 (1142)
Q Consensus 660 VEVv~~kqk~G~vS~servvGvksYTVY~I~Vksg~-----~eWtV~RRYSDF~~LHqrLke~fp~~~-l~LP~~p~sV~ 733 (1142)
|+|..+....++ +.++||+|.|++.++. ..|.|+|||+||.+||.+|.+.++... ++||
T Consensus 2 v~V~dP~~~~~~--------~~~~y~~Y~I~~~~~~~~~~~~~~~v~RRYsdF~~L~~~L~~~~~~~~~p~lP------- 66 (113)
T cd06898 2 VEVRDPRTHKED--------DWGSYTDYEIFLHTNSMCFTLKTSCVRRRYSEFVWLRNRLQKNALLIQLPSLP------- 66 (113)
T ss_pred eEEeCCcEecCC--------CCCCeEEEEEEEEeCCCccCcCceEEEcchHHHHHHHHHHHHHCCCCcCCCCC-------
Confidence 566665544321 4679999999998753 467999999999999999999988743 3677
Q ss_pred cccccccCCCC-HHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccc
Q 001141 734 KESRKIFGNVS-PLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 734 K~PKKlfGn~s-peFIEeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
+|+++|+++ ++|||+||++||.||++|++|+ .+..+..|+.||+.
T Consensus 67 --~K~~~~~~~~~~fie~Rr~~L~~fL~~i~~~p-~l~~s~~l~~FL~~ 112 (113)
T cd06898 67 --PKNLFGRFNNEGFIEERQQGLQDFLEKVLQTP-LLLSDSRLHLFLQT 112 (113)
T ss_pred --CCccccCCCCHHHHHHHHHHHHHHHHHHHcCh-hhccChHHHHhccC
Confidence 599999988 9999999999999999999975 57888999999975
No 10
>cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N
Probab=99.76 E-value=1.4e-18 Score=168.23 Aligned_cols=93 Identities=30% Similarity=0.459 Sum_probs=82.6
Q ss_pred cccccEEEEEEEEe--------CCceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCCHHHHHH
Q 001141 680 GVKEYTVYKIRVWS--------GKDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVSPLVVAH 750 (1142)
Q Consensus 680 GvksYTVY~I~Vks--------g~~eWtV~RRYSDF~~LHqrLke~fp~~~-l~LP~~p~sV~K~PKKlfGn~speFIEe 750 (1142)
+.+.||+|.|+|+. ....|+|.||||||.+||.+|++.++... ++|| +|+++|+++++|||+
T Consensus 18 ~~~~~~~Y~I~V~~~~~~~~~~~~~~w~V~RRYsdF~~L~~~L~~~~~~~~~~~lP---------~K~~~~~~~~~~ie~ 88 (119)
T cd06877 18 NGERIYVFCIEVERNDRRAKGHEPQHWSVLRRYNEFYVLESKLTEFHGEFPDAPLP---------SRRIFGPKSYEFLES 88 (119)
T ss_pred CCcEEEEEEEEEEEccccCCCCCcCceEEEechHHHHHHHHHHHHHCCCCCCCCCc---------CCcccCCCCHHHHHH
Confidence 45789999999995 24689999999999999999999887653 5788 599999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccccc
Q 001141 751 RSVLIQECLQSILHSSSFSSPPNALITFLSQQ 782 (1142)
Q Consensus 751 RRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~s 782 (1142)
||.+||.||+.|++| +.++.++.|+.||+++
T Consensus 89 Rr~~Le~fL~~ll~~-~~l~~s~~~~~FL~~~ 119 (119)
T cd06877 89 KREIFEEFLQKLLQK-PELRGSELLYDFLSPN 119 (119)
T ss_pred HHHHHHHHHHHHhCC-cccccCHHHHHhCCCC
Confidence 999999999999997 5679999999999863
No 11
>cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway.
Probab=99.76 E-value=1.8e-18 Score=166.72 Aligned_cols=91 Identities=20% Similarity=0.217 Sum_probs=81.4
Q ss_pred ccccEEEEEEEEeCC---ceEEEEeecccHHHHHHHHHhhcccCC----CCCCCCCcccccccccccC----CCCHHHHH
Q 001141 681 VKEYTVYKIRVWSGK---DQWEVERRYRDFYTLYRRLKSLSADEG----WSLPSPWSSVEKESRKIFG----NVSPLVVA 749 (1142)
Q Consensus 681 vksYTVY~I~Vksg~---~eWtV~RRYSDF~~LHqrLke~fp~~~----l~LP~~p~sV~K~PKKlfG----n~speFIE 749 (1142)
.+.|++|+|+|.++. ..|.|+||||||.+||++|++.||... ++|| +|++++ +++++|||
T Consensus 19 ~~~yv~Y~I~v~~~~~~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~~P~lP---------~K~~~~~~~~~~~~~~ie 89 (120)
T cd07280 19 GGAYVVWKITIETKDLIGSSIVAYKRYSEFVQLREALLDEFPRHKRNEIPQLP---------PKVPWYDSRVNLNKAWLE 89 (120)
T ss_pred CCCEEEEEEEEEeCCCCCCcEEEEeeHHHHHHHHHHHHHHCcccccCcCCCCC---------CCcccccccccCCHHHHH
Confidence 579999999999864 799999999999999999999999762 3666 588888 89999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcccccccccc
Q 001141 750 HRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 750 eRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
+||++||.||+.|+.|+ .++.+++|+.||++
T Consensus 90 ~Rr~~Le~fL~~l~~~p-~l~~s~~~~~FL~~ 120 (120)
T cd07280 90 KRRRGLQYFLNCVLLNP-VFGGSPVVKEFLLP 120 (120)
T ss_pred HHHHHHHHHHHHHhCCH-hhccChHHHHhhCC
Confidence 99999999999999975 67899999999974
No 12
>cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also cal
Probab=99.76 E-value=2.4e-18 Score=163.90 Aligned_cols=92 Identities=32% Similarity=0.492 Sum_probs=81.1
Q ss_pred cccccEEEEEEEEeC----CceEEEEeecccHHHHHHHHHhhcccCC--CCCCCCCcccccccccccCCCCHHHHHHHHH
Q 001141 680 GVKEYTVYKIRVWSG----KDQWEVERRYRDFYTLYRRLKSLSADEG--WSLPSPWSSVEKESRKIFGNVSPLVVAHRSV 753 (1142)
Q Consensus 680 GvksYTVY~I~Vksg----~~eWtV~RRYSDF~~LHqrLke~fp~~~--l~LP~~p~sV~K~PKKlfGn~speFIEeRRk 753 (1142)
|.++||+|.|+|... ...|.|+||||||.+||++|++.||... ++|| +|+++|+++++||++||.
T Consensus 14 ~~~~yv~Y~I~v~~~~~~~~~~~~v~RRYsdF~~L~~~L~~~~p~~~~~~~lP---------~K~~~~~~~~~~ie~Rr~ 84 (112)
T cd07279 14 GEKKYVVYQLAVVQTGDPDTQPAFIERRYSDFLKLYKALRKQHPQLMAKVSFP---------RKVLMGNFSSELIAERSR 84 (112)
T ss_pred CCeeEEEEEEEEEECCCCCCceEEEecchHhHHHHHHHHHHHCCCcCCCCCCC---------CCeecccCCHHHHHHHHH
Confidence 457999999999874 3579999999999999999999998753 3666 488999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcccccccccc
Q 001141 754 LIQECLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 754 ~LE~YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
+||.||+.|++|+ .+.++++|+.||..
T Consensus 85 ~Le~fL~~l~~~p-~l~~s~~~~~FL~~ 111 (112)
T cd07279 85 AFEQFLGHILSIP-NLRDSKAFLDFLQG 111 (112)
T ss_pred HHHHHHHHHhCCH-hhhcChHHHHHhCC
Confidence 9999999999975 57899999999974
No 13
>cd07276 PX_SNX16 The phosphoinositide binding Phox Homology domain of Sorting Nexin 16. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking.
Probab=99.75 E-value=2.5e-18 Score=163.54 Aligned_cols=91 Identities=30% Similarity=0.456 Sum_probs=81.8
Q ss_pred cccEEEEEEEEeCC-ceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCcccccccccccCC-CCHHHHHHHHHHHHHHH
Q 001141 682 KEYTVYKIRVWSGK-DQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGN-VSPLVVAHRSVLIQECL 759 (1142)
Q Consensus 682 ksYTVY~I~Vksg~-~eWtV~RRYSDF~~LHqrLke~fp~~~l~LP~~p~sV~K~PKKlfGn-~speFIEeRRk~LE~YL 759 (1142)
+.||+|.|+|..+. ..|.|.||||||.+||++|++.||...++|| ||+++++ ++++||++||.+||.||
T Consensus 18 ~~~~vY~I~v~~~~~~~~~v~RRYsdF~~L~~~L~~~~~~~~~~lP---------~K~~~~~~~~~~fie~Rr~~Lq~fL 88 (110)
T cd07276 18 ARFTVYKIRVENKVGDSWFVFRRYTDFVRLNDKLKQMFPGFRLSLP---------PKRWFKDNFDPDFLEERQLGLQAFV 88 (110)
T ss_pred CCeEEEEEEEEECCCCEEEEEEehHHHHHHHHHHHHHCCCCCCCCC---------CcceecccCCHHHHHHHHHHHHHHH
Confidence 58999999999874 7999999999999999999999988656788 5888874 99999999999999999
Q ss_pred HHHHhcCCCCCCccccccccccc
Q 001141 760 QSILHSSSFSSPPNALITFLSQQ 782 (1142)
Q Consensus 760 q~LL~h~~~Ls~S~vL~eFLe~s 782 (1142)
+.|++| +.+.++++++.||.++
T Consensus 89 ~~ll~~-~~l~~s~~~~~FL~~~ 110 (110)
T cd07276 89 NNIMAH-KDIAKCKLVREFFCLD 110 (110)
T ss_pred HHHhcC-HhhhcChHHHHHhccC
Confidence 999997 4678899999999864
No 14
>cd06875 PX_IRAS The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Imidazoline Receptor Antisera-Selected (IRAS), also called nischarin, contains an N-terminal PX domain, leucine rich repeats, and a predicted coiled coil domain. The PX domain of IRAS binds to phosphatidylinositol-3-phosphate in membranes. Together with the coiled coil domain, it is essential for the localization of IRAS to endosomes. IRAS has been shown to interact with integrin and inhibit cell migration. Its interaction with alpha5 integrin causes a redistribution of the receptor from the cell surface to endosomal structures, suggesting that IRAS may function as a sorting nexin (SNX) which regulates the endosomal trafficking of integrin. SNXs make up the largest group a
Probab=99.75 E-value=2.5e-18 Score=165.82 Aligned_cols=92 Identities=34% Similarity=0.496 Sum_probs=83.9
Q ss_pred cccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCcccccccccccCCCCHHHHHHHHHHHHHHHHH
Q 001141 682 KEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQS 761 (1142)
Q Consensus 682 ksYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~~l~LP~~p~sV~K~PKKlfGn~speFIEeRRk~LE~YLq~ 761 (1142)
+.||+|.|+|..+...|+|+||||||.+||++|++.+......|| ||+++|+++++||++||.+||.||+.
T Consensus 15 ~~~~~Y~I~V~~~~~~w~V~RRYseF~~L~~~L~~~~~~~~~~~P---------~Kk~~~~~~~~~ie~Rr~~Le~yL~~ 85 (116)
T cd06875 15 EGYTVYIIEVKVGSVEWTVKHRYSDFAELHDKLVAEHKVDKDLLP---------PKKLIGNKSPSFVEKRRKELEIYLQT 85 (116)
T ss_pred CCEEEEEEEEEECCeEEEEEecHHHHHHHHHHHHHHcCcccCcCC---------CccccCCCCHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999998854445777 69999999999999999999999999
Q ss_pred HHhcCCCCCCcccccccccccc
Q 001141 762 ILHSSSFSSPPNALITFLSQQE 783 (1142)
Q Consensus 762 LL~h~~~Ls~S~vL~eFLe~s~ 783 (1142)
|++++ .+..+++|..||++..
T Consensus 86 ll~~~-~~~~s~~l~~FL~~~~ 106 (116)
T cd06875 86 LLSFF-QKTMPRELAHFLDFHK 106 (116)
T ss_pred HHhhh-cccCCHHHHHHhCCCc
Confidence 99975 5699999999999875
No 15
>cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX1 is both membrane associated and a cytosolic protein that exists as a tetramer in protein complexes. It can associate reversibly with membranes of the endosomal compartment, thereby coating these vesicles. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval
Probab=99.75 E-value=3e-18 Score=166.37 Aligned_cols=95 Identities=25% Similarity=0.517 Sum_probs=78.8
Q ss_pred cccccEEEEEEEEeC-----CceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCcccccccccccC----------CCC
Q 001141 680 GVKEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFG----------NVS 744 (1142)
Q Consensus 680 GvksYTVY~I~Vksg-----~~eWtV~RRYSDF~~LHqrLke~fp~~~l~LP~~p~sV~K~PKKlfG----------n~s 744 (1142)
|.++||+|.|+++++ ...|.|.|||+||.|||++|++.|+..+..+|++| +|++++ +++
T Consensus 14 ~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iPp~P------~K~~~~~~~~~~~~~~~~~ 87 (124)
T cd07281 14 GMNAYVVYKVTTQTSLLMFRSKHFTVKRRFSDFLGLYEKLSEKHSQNGFIVPPPP------EKSLIGMTKVKVGKEDSSS 87 (124)
T ss_pred CcCCeEEEEEEEecCCCccCCCceEEEeehHHHHHHHHHHHHhCCCCCcEeCCCC------Cccccccchhhcccccccc
Confidence 678999999999875 36899999999999999999999976543333322 355554 358
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccc
Q 001141 745 PLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 745 peFIEeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
++|||+||++||.||++|++|+ .++.+..|+.||+.
T Consensus 88 ~~fie~Rr~~Le~FL~~l~~~p-~l~~s~~~~~FL~~ 123 (124)
T cd07281 88 AEFLERRRAALERYLQRIVSHP-SLLQDPDVREFLEK 123 (124)
T ss_pred HHHHHHHHHHHHHHHHHHhcCc-ccccChHHHHHhCC
Confidence 9999999999999999999975 67889999999975
No 16
>cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some S
Probab=99.75 E-value=3.2e-18 Score=167.40 Aligned_cols=94 Identities=32% Similarity=0.402 Sum_probs=81.2
Q ss_pred ccccEEEEEEEEeCC----------ceEEEEeecccHHHHHHHHHhhcccC-CCCCCCCCcccccccccccCCCCHHHHH
Q 001141 681 VKEYTVYKIRVWSGK----------DQWEVERRYRDFYTLYRRLKSLSADE-GWSLPSPWSSVEKESRKIFGNVSPLVVA 749 (1142)
Q Consensus 681 vksYTVY~I~Vksg~----------~eWtV~RRYSDF~~LHqrLke~fp~~-~l~LP~~p~sV~K~PKKlfGn~speFIE 749 (1142)
.+.|++|.|.|+..+ ..|+|.|||+||.+||++|++.|+.. .+.||.+ |||++++++++|||
T Consensus 23 ~~~~~vY~I~V~~~~~~~~~~~~~~~~W~V~RRYsdF~~Lh~~Lk~~~~~~~~~~lP~p-------pKk~~~~~~~~fle 95 (127)
T cd06878 23 DKEVPLYVIVVHVSEVGLNEDESISSGWVVTRKLSEFHDLHRKLKECSSWLKKVELPSL-------SKKWFKSIDKKFLD 95 (127)
T ss_pred CeEEEEEEEEEEEecCCCCCCCCCcceEEEEEeHHHHHHHHHHHHHHCCCccccCCCCC-------CccccccCCHHHHH
Confidence 468999999998642 35999999999999999999999875 2455531 58999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCccccccccccc
Q 001141 750 HRSVLIQECLQSILHSSSFSSPPNALITFLSQQ 782 (1142)
Q Consensus 750 eRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~s 782 (1142)
+||.+||.|||.|+++ +.++.+.+|..||+++
T Consensus 96 ~Rr~~Le~YLq~ll~~-~~l~~s~~l~~FLsp~ 127 (127)
T cd06878 96 KSKNQLQKYLQFILED-ETLCQSEALYSFLSPS 127 (127)
T ss_pred HHHHHHHHHHHHHhCC-hhhcCCHHHHHHcCCC
Confidence 9999999999999996 5689999999999874
No 17
>cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development.
Probab=99.75 E-value=2.9e-18 Score=164.44 Aligned_cols=92 Identities=26% Similarity=0.361 Sum_probs=81.2
Q ss_pred cccccEEEEEEEEe----CCceEEEEeecccHHHHHHHHHhhcccCC--CCCCCCCcccccccccccCCCCHHHHHHHHH
Q 001141 680 GVKEYTVYKIRVWS----GKDQWEVERRYRDFYTLYRRLKSLSADEG--WSLPSPWSSVEKESRKIFGNVSPLVVAHRSV 753 (1142)
Q Consensus 680 GvksYTVY~I~Vks----g~~eWtV~RRYSDF~~LHqrLke~fp~~~--l~LP~~p~sV~K~PKKlfGn~speFIEeRRk 753 (1142)
|+++|++|.|.|.. +...|.|.||||||.+||++|++.|+... ++|| +|+++++++++||++||+
T Consensus 14 ~~~~yv~Y~I~v~~~~~~~~~~~~V~RRYSdF~~L~~~L~~~~~~~~~~~~~P---------~K~~~~~~~~~~ie~Rr~ 84 (112)
T cd07301 14 AHSKYVLYTIYVIQTGQYDPSPAYISRRYSDFERLHRRLRRLFGGEMAGVSFP---------RKRLRKNFTAETIAKRSR 84 (112)
T ss_pred CCcCEEEEEEEEEecCCCCCCceEEEeehHhHHHHHHHHHHHCCCcCCCCCCC---------CCcccCCCCHHHHHHHHH
Confidence 67899999999974 34679999999999999999999998652 3667 589999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcccccccccc
Q 001141 754 LIQECLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 754 ~LE~YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
+||.||+.|++|+ .+..+..|++||..
T Consensus 85 ~Le~fL~~i~~~p-~l~~s~~~~~FL~l 111 (112)
T cd07301 85 AFEQFLCHLHSLP-ELRASPAFLEFFYL 111 (112)
T ss_pred HHHHHHHHHhcCH-HHhcChHHHHHhCC
Confidence 9999999999974 67888999999965
No 18
>cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily consists of SNX7, SNX30, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal
Probab=99.75 E-value=3.8e-18 Score=164.13 Aligned_cols=104 Identities=23% Similarity=0.352 Sum_probs=85.7
Q ss_pred eEEEeccccccCCcccccceecccccEEEEEEEEeC-----CceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCccc
Q 001141 659 GVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSV 732 (1142)
Q Consensus 659 ~VEVv~~kqk~G~vS~servvGvksYTVY~I~Vksg-----~~eWtV~RRYSDF~~LHqrLke~fp~~~-l~LP~~p~sV 732 (1142)
.|+|..+.++ ++ |+++||+|.|++++. ...|.|+|||+||.|||++|.+.+|... ++||
T Consensus 2 ~v~V~dP~~~-~~--------~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPpLP------ 66 (116)
T cd06860 2 FITVDNPEKH-VT--------TLETYITYRVTTKTTRSEFDSSEYSVRRRYQDFLWLRQKLEESHPTHIIPPLP------ 66 (116)
T ss_pred EEEEcCCeec-cC--------CCcCEEEEEEEEeeCCCCcCCCceEEEeeHHHHHHHHHHHHHHCCCCccCCCC------
Confidence 3566665543 32 578999999999863 4689999999999999999999998754 3777
Q ss_pred ccccccc----cCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccc
Q 001141 733 EKESRKI----FGNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 733 ~K~PKKl----fGn~speFIEeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
+|+. +++++++|||+||++||.||+.|+.|+ .+.++.+|+.||+.
T Consensus 67 ---~K~~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~hp-~l~~s~~l~~FLt~ 115 (116)
T cd06860 67 ---EKHSVKGLLDRFSPEFVATRMRALHKFLNRIVEHP-VLSFNEHLKVFLTA 115 (116)
T ss_pred ---CcchhhhhcccCCHHHHHHHHHHHHHHHHHHHcCc-ccccCcHHHHhhcC
Confidence 4665 367999999999999999999999975 57899999999974
No 19
>cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer.
Probab=99.75 E-value=4e-18 Score=164.49 Aligned_cols=105 Identities=26% Similarity=0.308 Sum_probs=86.7
Q ss_pred eEEEeccccccCCcccccceecccccEEEEEEEEeC-----CceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCccc
Q 001141 659 GVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSV 732 (1142)
Q Consensus 659 ~VEVv~~kqk~G~vS~servvGvksYTVY~I~Vksg-----~~eWtV~RRYSDF~~LHqrLke~fp~~~-l~LP~~p~sV 732 (1142)
.|+|..+.++ + .|.+.||+|.|.++++ ...|+|+|||+||.+||++|++.++... .+||
T Consensus 3 ~i~V~dP~~~-~--------~g~~~y~~Y~I~~~t~~~~f~~~~~~V~RRysdF~~L~~~L~~~~~~~~iPplP------ 67 (116)
T cd07295 3 EIEVRNPKTH-G--------IGRGMFTDYEIVCRTNIPAFKLRVSSVRRRYSDFEYFRDILERESPRVMIPPLP------ 67 (116)
T ss_pred EEEEeCCcEe-c--------CCCCCEEEEEEEEEeCCccccccceEEecChhHHHHHHHHHHHHCCCCccCCCC------
Confidence 4667666554 2 2678999999998864 3579999999999999999999987654 3556
Q ss_pred ccccccccCCCCHHHHHHHHHHHHHHHHHHHhcCCCCC-Cccccccccccc
Q 001141 733 EKESRKIFGNVSPLVVAHRSVLIQECLQSILHSSSFSS-PPNALITFLSQQ 782 (1142)
Q Consensus 733 ~K~PKKlfGn~speFIEeRRk~LE~YLq~LL~h~~~Ls-~S~vL~eFLe~s 782 (1142)
+|+++++++++|||+||++||.||++|++|+ .++ ++++|..||+..
T Consensus 68 ---~K~~~~~~~~~~ie~Rr~~Le~fL~~i~~~p-~l~~~s~~~~~FL~~~ 114 (116)
T cd07295 68 ---GKIFTNRFSDEVIEERRQGLETFLQSVAGHP-LLQTGSKVLAAFLQDP 114 (116)
T ss_pred ---CCccccCCCHHHHHHHHHHHHHHHHHHhcCH-hhhhCCHHHHHhcCCC
Confidence 4777888999999999999999999999975 456 689999999865
No 20
>cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back
Probab=99.75 E-value=3.8e-18 Score=162.60 Aligned_cols=88 Identities=24% Similarity=0.367 Sum_probs=75.9
Q ss_pred ccccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCccccccccccc---------CCCCHHHHHH
Q 001141 681 VKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIF---------GNVSPLVVAH 750 (1142)
Q Consensus 681 vksYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~~-l~LP~~p~sV~K~PKKlf---------Gn~speFIEe 750 (1142)
.++||+|.|++.. |+|+||||||.+||+.|.+.||... .+|| +|+.+ |+++++|||+
T Consensus 15 ~~~y~~Y~I~~~~----~~V~RRYsdF~~L~~~L~~~~p~~~iPplP---------~K~~~~~~~~~~~~~~~~~~~ie~ 81 (112)
T cd06867 15 SGSYIVYVIRLGG----SEVKRRYSEFESLRKNLTRLYPTLIIPPIP---------EKHSLKDYAKKPSKAKNDAKIIER 81 (112)
T ss_pred ccCEEEEEEEeee----EEEEeccHHHHHHHHHHHHHCcCCCcCCCC---------CcchhhhhccccccccCcHHHHHH
Confidence 5789999999854 9999999999999999999998754 3666 35544 3589999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccccc
Q 001141 751 RSVLIQECLQSILHSSSFSSPPNALITFLSQQ 782 (1142)
Q Consensus 751 RRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~s 782 (1142)
||++||.||+.|++|+ .++.++.|+.||+++
T Consensus 82 Rr~~Le~fL~~l~~~p-~l~~s~~~~~FL~~~ 112 (112)
T cd06867 82 RKRMLQRFLNRCLQHP-ILRNDIVFQKFLDPN 112 (112)
T ss_pred HHHHHHHHHHHHhcCh-hhccCcHHHHhcCCC
Confidence 9999999999999975 679999999999863
No 21
>cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. T
Probab=99.75 E-value=4.4e-18 Score=166.96 Aligned_cols=94 Identities=22% Similarity=0.337 Sum_probs=82.2
Q ss_pred eecccccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccC--CCCCCCCCcccccccccccCCCCHHHHHHHHHHH
Q 001141 678 LVGVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADE--GWSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLI 755 (1142)
Q Consensus 678 vvGvksYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~--~l~LP~~p~sV~K~PKKlfGn~speFIEeRRk~L 755 (1142)
..|+++|++|+|+.++ ..|+|+||||||.|||++|.+.|+.. .++|| +|+++|+|+++||++||++|
T Consensus 14 ~~g~~~Yv~Y~I~~~~--~~~~V~RRYsDF~~L~~~L~~~~~~~i~vPplP---------~K~~~g~f~~~FIe~Rr~~L 82 (126)
T cd07285 14 MYGLKSYIEYQLTPTN--TNRSVNHRYKHFDWLYERLLVKFGLAIPIPSLP---------DKQVTGRFEEEFIKMRMERL 82 (126)
T ss_pred CCCCcCeEEEEEEecc--CCeEeeCCccHHHHHHHHHHHhcCCCcccCCCC---------CccccCCCCHHHHHHHHHHH
Confidence 3578999999999875 47999999999999999999988643 23666 48999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcccccccccccc
Q 001141 756 QECLQSILHSSSFSSPPNALITFLSQQE 783 (1142)
Q Consensus 756 E~YLq~LL~h~~~Ls~S~vL~eFLe~s~ 783 (1142)
|.||++|++| +.++.+..|+.||+.++
T Consensus 83 e~FL~ri~~h-P~L~~~~~l~~FL~~~~ 109 (126)
T cd07285 83 QAWMTRMCRH-PVISESEVFQQFLNFRD 109 (126)
T ss_pred HHHHHHHHcC-cCcCCCcHHHHHhCCCC
Confidence 9999999998 45788899999999864
No 22
>cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architectu
Probab=99.74 E-value=4.9e-18 Score=164.21 Aligned_cols=108 Identities=21% Similarity=0.339 Sum_probs=86.1
Q ss_pred EEEeccccccCCcccccc-eecccccEEEEEEEEeC-----CceEEEEeecccHHHHHHHHHhhcccCCC-CCCCCCccc
Q 001141 660 VEVIGAKQKKGDVSLSER-LVGVKEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSV 732 (1142)
Q Consensus 660 VEVv~~kqk~G~vS~ser-vvGvksYTVY~I~Vksg-----~~eWtV~RRYSDF~~LHqrLke~fp~~~l-~LP~~p~sV 732 (1142)
|.|..+++..++. + ..|.++||+|.|+++++ ...|+|+|||+||.+||++|++.||...+ +||
T Consensus 2 i~v~dp~~~~~~~----~~~~~~~~ytvY~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP------ 71 (120)
T cd06865 2 ITVSDPKKEQEPS----RVPLGGPPYISYKVTTRTNIPSYTHGEFTVRRRFRDVVALADRLAEAYRGAFVPPRP------ 71 (120)
T ss_pred eEecCcceecCCc----cccCCCCCEEEEEEEEecCCCCCCCCceEEEeehHHHHHHHHHHHHHCCCCeeCCCc------
Confidence 4566655543321 1 23558999999999886 37899999999999999999999987543 555
Q ss_pred ccccccccC---CCCHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccc
Q 001141 733 EKESRKIFG---NVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 733 ~K~PKKlfG---n~speFIEeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
+|++++ +++++|||+||++||.||+.|+.|+ .++.+++|+.||+.
T Consensus 72 ---~K~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~~p-~l~~s~~~~~FL~~ 119 (120)
T cd06865 72 ---DKSVVESQVMQSAEFIEQRRVALEKYLNRLAAHP-VIGLSDELRVFLTL 119 (120)
T ss_pred ---CCccccccccCCHHHHHHHHHHHHHHHHHHHcCc-eeecCcHHHHhccC
Confidence 477764 3699999999999999999999975 67999999999975
No 23
>cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor f
Probab=99.74 E-value=6.2e-18 Score=164.85 Aligned_cols=93 Identities=25% Similarity=0.370 Sum_probs=77.8
Q ss_pred cccccEEEEEEEEeCC-----ceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCccccccccccc---------CCCCH
Q 001141 680 GVKEYTVYKIRVWSGK-----DQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIF---------GNVSP 745 (1142)
Q Consensus 680 GvksYTVY~I~Vksg~-----~eWtV~RRYSDF~~LHqrLke~fp~~~l~LP~~p~sV~K~PKKlf---------Gn~sp 745 (1142)
|.++||+|.|+++++. ..|+|+|||+||.|||+.|++......++|| +|+++ |++++
T Consensus 15 ~~~~y~~Y~I~~~t~~p~~~~~~~~V~RRYsDF~~L~~~L~~~~~~~iPpLP---------~K~~~~~~~~~~~~~~~~~ 85 (123)
T cd07293 15 GRGRFTTYEIRLKTNLPIFKLKESTVRRRYSDFEWLRSELERESKVVVPPLP---------GKALFRQLPFRGDDGIFDD 85 (123)
T ss_pred CCcCEEEEEEEEEeCCCccccCceEEECCchHHHHHHHHHHhccCCccCCCC---------CCchhhhcccccccCCCCH
Confidence 6789999999999753 5899999999999999999865322223666 36654 47999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccc
Q 001141 746 LVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQ 782 (1142)
Q Consensus 746 eFIEeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~s 782 (1142)
+|||+||++||.||++|++| +.++++..|+.||+.+
T Consensus 86 ~fie~Rr~~Le~FL~~i~~h-P~l~~~~~l~~FL~~~ 121 (123)
T cd07293 86 SFIEERKQGLEQFLNKVAGH-PLAQNERCLHMFLQDE 121 (123)
T ss_pred HHHHHHHHHHHHHHHHHHcC-cccccCcHHHhhcCCC
Confidence 99999999999999999998 5689999999999853
No 24
>cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX30 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-8, and SNX32
Probab=99.74 E-value=7e-18 Score=163.01 Aligned_cols=103 Identities=22% Similarity=0.328 Sum_probs=84.5
Q ss_pred EEEeccccccCCcccccceecccccEEEEEEEEeCC-----ceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccc
Q 001141 660 VEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGK-----DQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVE 733 (1142)
Q Consensus 660 VEVv~~kqk~G~vS~servvGvksYTVY~I~Vksg~-----~eWtV~RRYSDF~~LHqrLke~fp~~~-l~LP~~p~sV~ 733 (1142)
|+|..+.++. .|++.|++|+|++++.. ..|.|+|||+||.|||+.|.+.+|... ++||+
T Consensus 3 i~V~dP~~~~---------~~~~~y~~Y~I~t~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~p~~~iPpLP~------ 67 (116)
T cd07283 3 VTVDDPKKHV---------CTMETYITYRVTTKTTRTEFDLPEYSVRRRYQDFDWLRNKLEESQPTHLIPPLPE------ 67 (116)
T ss_pred EEEcCcceec---------CCCcCeEEEEEEEecCCCCcccCceEEeCCccHHHHHHHHHHHhCCCcccCCCCC------
Confidence 5666665542 25789999999999753 589999999999999999999988754 36773
Q ss_pred ccccccc----CCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccc
Q 001141 734 KESRKIF----GNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 734 K~PKKlf----Gn~speFIEeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
|+++ ++++++|||+||++||.||++|++| +.++.++.|+.||+.
T Consensus 68 ---K~~~~~~~~~~~~~fie~Rr~~Le~FL~~i~~h-p~L~~s~~~~~FLt~ 115 (116)
T cd07283 68 ---KFVVKGVVDRFSEEFVETRRKALDKFLKRIADH-PVLSFNEHFNVFLTA 115 (116)
T ss_pred ---cccccccccCCCHHHHHHHHHHHHHHHHHHHcC-cccccCcHHHHhhcC
Confidence 5443 4589999999999999999999998 567888999999974
No 25
>cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway.
Probab=99.73 E-value=1.2e-17 Score=160.35 Aligned_cols=105 Identities=23% Similarity=0.274 Sum_probs=85.4
Q ss_pred eEEEeccccccCCcccccceecccccEEEEEEEEeCC-----ceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCccc
Q 001141 659 GVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGK-----DQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSV 732 (1142)
Q Consensus 659 ~VEVv~~kqk~G~vS~servvGvksYTVY~I~Vksg~-----~eWtV~RRYSDF~~LHqrLke~fp~~~-l~LP~~p~sV 732 (1142)
.|.|..+.+..+ .|.++||+|.|++++.. ..|.|+|||+||.|||+.|.+.||... ++||
T Consensus 2 ~i~V~dP~~~~~--------~~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP------ 67 (118)
T cd06863 2 ECLVSDPQKELD--------GSSDTYISYLITTKTNLPSFSRKEFKVRRRYSDFVFLHECLSNDFPACVVPPLP------ 67 (118)
T ss_pred EEEEeCcccccC--------CCccCEEEEEEEEeeCCCCcccCceEEEecHHHHHHHHHHHHHHCcCCcCCCCC------
Confidence 355666554432 25789999999998743 579999999999999999999998764 3666
Q ss_pred cccccccc-----CCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccc
Q 001141 733 EKESRKIF-----GNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 733 ~K~PKKlf-----Gn~speFIEeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
+|+.+ ++++++||++||++||.||+.|++|+ .+..+++|+.||+.
T Consensus 68 ---~K~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~i~~~p-~l~~s~~l~~FL~s 117 (118)
T cd06863 68 ---DKHRLEYITGDRFSPEFITRRAQSLQRFLRRISLHP-VLSQSKILHQFLES 117 (118)
T ss_pred ---CccccccccccCCCHHHHHHHHHHHHHHHHHHhcCc-ccccCcHHHhhcCC
Confidence 36653 46899999999999999999999975 67999999999974
No 26
>cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles.
Probab=99.73 E-value=9.6e-18 Score=159.11 Aligned_cols=87 Identities=22% Similarity=0.218 Sum_probs=78.8
Q ss_pred ccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccCCC-CCCCCCcccccccccccCCCCHHHHHHHHHHHHHHHHH
Q 001141 683 EYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQS 761 (1142)
Q Consensus 683 sYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~~l-~LP~~p~sV~K~PKKlfGn~speFIEeRRk~LE~YLq~ 761 (1142)
.|++|.|++.. ..|.|+||||||.+||++|++.||...+ +|| ||+++++++++||++||++||.||+.
T Consensus 17 ~y~~Y~i~~~~--~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP---------~K~~~~~~~~~~ie~Rr~~Le~fL~~ 85 (105)
T cd06866 17 KHVEYEVSSKR--FKSTVYRRYSDFVWLHEYLLKRYPYRMVPALP---------PKRIGGSADREFLEARRRGLSRFLNL 85 (105)
T ss_pred CCEEEEEEEec--CCEEEEEEhHHHHHHHHHHHHHCCCCcCCCCC---------CCccccCCCHHHHHHHHHHHHHHHHH
Confidence 89999999875 6899999999999999999999987543 677 69999999999999999999999999
Q ss_pred HHhcCCCCCCcccccccccc
Q 001141 762 ILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 762 LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
|++|+ .+..+++|+.||+.
T Consensus 86 l~~~p-~l~~s~~l~~FL~~ 104 (105)
T cd06866 86 VARHP-VLSEDELVRTFLTE 104 (105)
T ss_pred HhcCh-hhccChHHHhhcCC
Confidence 99975 67999999999974
No 27
>cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. The PX dom
Probab=99.73 E-value=9.2e-18 Score=161.65 Aligned_cols=93 Identities=30% Similarity=0.478 Sum_probs=80.5
Q ss_pred cccccEEEEEEE-EeC---CceEEEEeecccHHHHHHHHHhhcccC--CCCCCCCCcccccccccccCCCCHHHHHHHHH
Q 001141 680 GVKEYTVYKIRV-WSG---KDQWEVERRYRDFYTLYRRLKSLSADE--GWSLPSPWSSVEKESRKIFGNVSPLVVAHRSV 753 (1142)
Q Consensus 680 GvksYTVY~I~V-ksg---~~eWtV~RRYSDF~~LHqrLke~fp~~--~l~LP~~p~sV~K~PKKlfGn~speFIEeRRk 753 (1142)
+.++||+|.|.+ +++ ...|+|+||||||.+||..|.+.|+.. .++|| +|+++|+++++||++||+
T Consensus 14 ~~~~yv~Y~i~~~~~g~~~~~~~~v~RRYSdF~~L~~~L~~~~~~~~~~~~lP---------~K~~~~~~~~~~ie~Rr~ 84 (114)
T cd07300 14 TISKHVVYQIIVIQTGSFDCNKVVIERRYSDFLKLHQELLSDFSEELEDVVFP---------KKKLTGNFSEEIIAERRV 84 (114)
T ss_pred CCcceEEEEEEEEEecCccCceEEEEeccHhHHHHHHHHHHHccccCCCCCCC---------CCcccCCCCHHHHHHHHH
Confidence 457899999987 444 468999999999999999999988653 34677 589999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCccccccccccc
Q 001141 754 LIQECLQSILHSSSFSSPPNALITFLSQQ 782 (1142)
Q Consensus 754 ~LE~YLq~LL~h~~~Ls~S~vL~eFLe~s 782 (1142)
+||.||+.|++|+ .+..+..+++||...
T Consensus 85 ~Le~yL~~l~~~p-~l~~s~~~~~FL~~~ 112 (114)
T cd07300 85 ALRDYLTLLYSLR-FVRRSQAFQDFLTHP 112 (114)
T ss_pred HHHHHHHHHhcCH-hhhcChHHHHHhCCc
Confidence 9999999999975 578889999999865
No 28
>cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX7 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, SNX30,
Probab=99.73 E-value=1e-17 Score=161.99 Aligned_cols=103 Identities=18% Similarity=0.304 Sum_probs=85.0
Q ss_pred EEEeccccccCCcccccceecccccEEEEEEEEeC-----CceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccc
Q 001141 660 VEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVE 733 (1142)
Q Consensus 660 VEVv~~kqk~G~vS~servvGvksYTVY~I~Vksg-----~~eWtV~RRYSDF~~LHqrLke~fp~~~-l~LP~~p~sV~ 733 (1142)
|.|..+.++. .|++.|++|+|++++. ..+|.|.|||+||.|||+.|.+.+|... ++||+
T Consensus 3 i~V~dP~~~~---------~~~~~y~~Y~V~t~t~~~~~~~~~~~V~RRysDF~~L~~~L~~~~p~~~iPplP~------ 67 (116)
T cd07284 3 ITVDEPESHV---------TAIETFITYRVMTKTSRSEFDSSEFEVRRRYQDFLWLKGRLEEAHPTLIIPPLPE------ 67 (116)
T ss_pred EEEeCcceee---------cCCcCeEEEEEEEeeCCCCcCCCceEEeCCchHHHHHHHHHHHHCCCceeCCCCC------
Confidence 5666664442 3678999999999984 3589999999999999999999988764 37773
Q ss_pred ccccccc----CCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccc
Q 001141 734 KESRKIF----GNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 734 K~PKKlf----Gn~speFIEeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
|+++ ++++++|||+||++||.||++|++| +.++.+.+|+.||+.
T Consensus 68 ---K~~~~~~~~~~~~~fie~Rr~~Le~FL~ri~~h-p~L~~s~~~~~FL~~ 115 (116)
T cd07284 68 ---KFVMKGMVERFNEDFIETRRKALHKFLNRIADH-PTLTFNEDFKIFLTA 115 (116)
T ss_pred ---cchhhhccccCCHHHHHHHHHHHHHHHHHHHcC-cccccChHHHHhhcC
Confidence 5543 4589999999999999999999998 457888999999975
No 29
>cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the
Probab=99.73 E-value=1.1e-17 Score=162.86 Aligned_cols=104 Identities=22% Similarity=0.370 Sum_probs=84.0
Q ss_pred eEEEeccccccCCcccccceecccccEEEEEEEEeC-----CceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCccc
Q 001141 659 GVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSV 732 (1142)
Q Consensus 659 ~VEVv~~kqk~G~vS~servvGvksYTVY~I~Vksg-----~~eWtV~RRYSDF~~LHqrLke~fp~~~-l~LP~~p~sV 732 (1142)
+|.|..+.++. .|.+.||+|.|+++++ ...|+|+|||+||.|||+.|++. +... ++||
T Consensus 3 ~i~V~dP~~~~---------~~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~iPpLP------ 66 (123)
T cd06894 3 EIDVVNPQTHG---------VGKKRFTDYEVRMRTNLPVFKKKESSVRRRYSDFEWLRSELERD-SKIVVPPLP------ 66 (123)
T ss_pred EEEEeCCcEec---------CCCcCEEEEEEEEecCCcccccCccEEEecCHHHHHHHHHHHHc-CCCccCCCC------
Confidence 45666655442 2678999999999864 36899999999999999999875 4433 3666
Q ss_pred cccccccc---------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccc
Q 001141 733 EKESRKIF---------GNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQ 782 (1142)
Q Consensus 733 ~K~PKKlf---------Gn~speFIEeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~s 782 (1142)
+|+++ |+++++|||+||++||.||++|++|+ .++++.+|+.||+..
T Consensus 67 ---~K~~~~~~~~~~~~~~~~~~fie~Rr~~L~~fL~~i~~hp-~l~~s~~~~~FL~~~ 121 (123)
T cd06894 67 ---GKALKRQLPFRGDDGIFEEEFIEERRKGLETFINKVAGHP-LAQNEKCLHMFLQEE 121 (123)
T ss_pred ---CCceecccccccccCCCCHHHHHHHHHHHHHHHHHHHcCh-hhccCCHHHHhcCCC
Confidence 35553 78999999999999999999999985 679999999999864
No 30
>cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is loca
Probab=99.73 E-value=1.3e-17 Score=163.14 Aligned_cols=93 Identities=22% Similarity=0.342 Sum_probs=83.1
Q ss_pred ecccccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCCHHHHHHHHHHHHH
Q 001141 679 VGVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQE 757 (1142)
Q Consensus 679 vGvksYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~~-l~LP~~p~sV~K~PKKlfGn~speFIEeRRk~LE~ 757 (1142)
.|.++||+|.|++.+ ..|.|.|||+||.+||++|.+.||... ++|| +|+++|+++++||++||++||.
T Consensus 15 ~g~~~y~~Y~I~~~~--~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP---------~K~~~~~~~~~fie~Rr~~Le~ 83 (125)
T cd06862 15 KGLKSFIAYQITPTH--TNVTVSRRYKHFDWLYERLVEKYSCIAIPPLP---------EKQVTGRFEEDFIEKRRERLEL 83 (125)
T ss_pred CCCcCEEEEEEEEec--CcEEEEEecHHHHHHHHHHHHHCCCCCCCCCC---------CCccccCCCHHHHHHHHHHHHH
Confidence 478899999999865 789999999999999999999999753 3666 5889999999999999999999
Q ss_pred HHHHHHhcCCCCCCcccccccccccc
Q 001141 758 CLQSILHSSSFSSPPNALITFLSQQE 783 (1142)
Q Consensus 758 YLq~LL~h~~~Ls~S~vL~eFLe~s~ 783 (1142)
||+.|++|+ .++.++.|..||+..+
T Consensus 84 fL~~I~~~p-~l~~s~~~~~FL~~~~ 108 (125)
T cd06862 84 WMNRLARHP-VLSQSEVFRHFLTCTD 108 (125)
T ss_pred HHHHHhcCH-hhhcChHHHHHcCCcc
Confidence 999999975 6799999999998763
No 31
>cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, throug
Probab=99.72 E-value=1.3e-17 Score=161.23 Aligned_cols=93 Identities=31% Similarity=0.519 Sum_probs=79.6
Q ss_pred cccccEEEEEEEEe-----CCceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCCHHHHHHHHH
Q 001141 680 GVKEYTVYKIRVWS-----GKDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVSPLVVAHRSV 753 (1142)
Q Consensus 680 GvksYTVY~I~Vks-----g~~eWtV~RRYSDF~~LHqrLke~fp~~~-l~LP~~p~sV~K~PKKlfGn~speFIEeRRk 753 (1142)
|.+.||+|.|+|.. +...|+|+|||+||.+||++|++.||... ++|| +|+++++++++|||+||.
T Consensus 18 ~~~~y~~Y~I~v~~~~~~~~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~lP---------~K~~~~~~~~~~ie~Rr~ 88 (120)
T cd06873 18 HGKTYAVYAISVTRIYPNGQEESWHVYRRYSDFHDLHMRLKEKFPNLSKLSFP---------GKKTFNNLDRAFLEKRRK 88 (120)
T ss_pred CCceEEEEEEEEEEecCCCCccceEEEeehHHHHHHHHHHHHHCcCCCCCCCC---------CCcccCCCCHHHHHHHHH
Confidence 56789999999976 23689999999999999999999998753 4777 588999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCc----cccccccccc
Q 001141 754 LIQECLQSILHSSSFSSPP----NALITFLSQQ 782 (1142)
Q Consensus 754 ~LE~YLq~LL~h~~~Ls~S----~vL~eFLe~s 782 (1142)
+||.||+.|++++ .++++ ..|..||++.
T Consensus 89 ~Le~fL~~ll~~~-~l~~~~~~~~~l~~FL~~~ 120 (120)
T cd06873 89 MLNQYLQSLLNPE-VLDANPGLQEIVLDFLEPG 120 (120)
T ss_pred HHHHHHHHHhCCH-hhccCHHHHHHHHHHcCCC
Confidence 9999999999975 45665 4688888763
No 32
>cd06893 PX_SNX19 The phosphoinositide binding Phox Homology domain of Sorting Nexin 19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found
Probab=99.72 E-value=1.4e-17 Score=164.38 Aligned_cols=96 Identities=24% Similarity=0.297 Sum_probs=75.9
Q ss_pred cccccEEEEEEEEeC----------------CceEEEEeecccHHHHHHHHHhhcccCCC---CCCCCCccccccccccc
Q 001141 680 GVKEYTVYKIRVWSG----------------KDQWEVERRYRDFYTLYRRLKSLSADEGW---SLPSPWSSVEKESRKIF 740 (1142)
Q Consensus 680 GvksYTVY~I~Vksg----------------~~eWtV~RRYSDF~~LHqrLke~fp~~~l---~LP~~p~sV~K~PKKlf 740 (1142)
|+.+||+|+|++.+. ...|+|.||||||.+||++|++..+...+ .+|+.+ .|+..+
T Consensus 17 g~~~y~~Y~V~~~t~~~~~~~~~~~~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~~~~~~~~~~~P~k~-----~p~lp~ 91 (132)
T cd06893 17 GTHPYTLYTVQYETILDVQSEQNPNAASEQPLATHTVNRRFREFLTLQTRLEENPKFRKIMNVKGPPKR-----LFDLPF 91 (132)
T ss_pred CCCCeEEEEEEeccCcchhcccccccccccccCeEEEECchHHHHHHHHHHHHccCcccccccCCCCcc-----CCCCCC
Confidence 789999999998752 25799999999999999999986332221 344210 111226
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccc
Q 001141 741 GNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 741 Gn~speFIEeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
|+++++|||+||++||.||++|++|+ .++.+.+|+.||..
T Consensus 92 g~~d~~fie~Rr~~Le~fL~~l~~~p-~l~~s~~l~~FL~~ 131 (132)
T cd06893 92 GNMDKDKIEARRGLLETFLRQLCSIP-EISNSEEVQEFLAY 131 (132)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCH-hhhcCHHHHHHHcc
Confidence 89999999999999999999999975 57999999999975
No 33
>cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex,
Probab=99.71 E-value=2.7e-17 Score=156.05 Aligned_cols=92 Identities=24% Similarity=0.398 Sum_probs=79.5
Q ss_pred cccccEEEEEEEEeC-----CceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCCHH--HHHHH
Q 001141 680 GVKEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVSPL--VVAHR 751 (1142)
Q Consensus 680 GvksYTVY~I~Vksg-----~~eWtV~RRYSDF~~LHqrLke~fp~~~-l~LP~~p~sV~K~PKKlfGn~spe--FIEeR 751 (1142)
|.++||+|.|++++. ...|.|+|||+||.+||++|.+.+|... ++|| +|+++|+++.+ ||++|
T Consensus 14 ~~~~y~~Y~I~v~~~~~~~~~~~~~v~RRyseF~~L~~~L~~~~~~~~~P~lP---------~k~~~~~~~~~~~~ie~R 84 (114)
T cd06859 14 GMSAYVVYRVTTKTNLPDFKKSEFSVLRRYSDFLWLYERLVEKYPGRIVPPPP---------EKQAVGRFKVKFEFIEKR 84 (114)
T ss_pred CccCEEEEEEEeecCCCCCCCCceEEEEChHHHHHHHHHHHHHCCCCEeCCCC---------CCcccCccCccHHHHHHH
Confidence 567999999999874 3579999999999999999999988653 3556 58889987655 99999
Q ss_pred HHHHHHHHHHHHhcCCCCCCcccccccccc
Q 001141 752 SVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 752 Rk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
|++||.||+.|++|+ .+..+++|+.||+.
T Consensus 85 r~~L~~fL~~i~~~p-~l~~s~~~~~Fl~~ 113 (114)
T cd06859 85 RAALERFLRRIAAHP-VLRKDPDFRLFLES 113 (114)
T ss_pred HHHHHHHHHHHhcCh-hhccCcHHHhhcCC
Confidence 999999999999975 57889999999975
No 34
>cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction.
Probab=99.71 E-value=2.5e-17 Score=154.92 Aligned_cols=91 Identities=32% Similarity=0.475 Sum_probs=81.9
Q ss_pred cccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccC--CCCHHHHHHHHHHHHHH
Q 001141 682 KEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFG--NVSPLVVAHRSVLIQEC 758 (1142)
Q Consensus 682 ksYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~~-l~LP~~p~sV~K~PKKlfG--n~speFIEeRRk~LE~Y 758 (1142)
+.||+|.|+|..+...|.|+||||||.+||+.|++.++... ++|| +|++++ +++++|||+||++||.|
T Consensus 13 ~~~~~Y~I~v~~~~~~~~v~rRYseF~~L~~~L~~~~~~~~~p~lP---------~K~~~~~~~~~~~~ie~Rr~~Le~y 83 (108)
T cd06897 13 KPYTVYNIQVRLPLRSYTVSRRYSEFVALHKQLESEVGIEPPYPLP---------PKSWFLSTSSNPKLVEERRVGLEAF 83 (108)
T ss_pred CCeEEEEEEEEcCCceEEEEcchHHHHHHHHHHHHHcCCCCCCCCC---------CcCEecccCCCHHHHHHHHHHHHHH
Confidence 58999999999998999999999999999999999998753 4777 588888 89999999999999999
Q ss_pred HHHHHhcC-CCCCCcccccccccc
Q 001141 759 LQSILHSS-SFSSPPNALITFLSQ 781 (1142)
Q Consensus 759 Lq~LL~h~-~~Ls~S~vL~eFLe~ 781 (1142)
|+.|++|+ ..+.++.++++||+.
T Consensus 84 L~~l~~~~~~~l~~s~~~~~FL~~ 107 (108)
T cd06897 84 LRALLNDEDSRWRNSPAVKEFLNL 107 (108)
T ss_pred HHHHHcCCccchhcCHHHHHHhCC
Confidence 99999975 157899999999975
No 35
>cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to human RPK118, which contains an N-terminal PX domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. It also binds the antioxidant peroxiredoxin-3 (PRDX3) and may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Members of this subfamily also show similarity to sorting nexin 15 (SNX15), which contains PX and MIT domains but does not contain a kinase doma
Probab=99.71 E-value=3.1e-17 Score=159.22 Aligned_cols=93 Identities=25% Similarity=0.294 Sum_probs=77.7
Q ss_pred cccEEEEEEEEeCC-------ceEEEEeecccHHHHHHHHHhhcccC---CCCCCCCCcccccccccccCCCCHHHHHHH
Q 001141 682 KEYTVYKIRVWSGK-------DQWEVERRYRDFYTLYRRLKSLSADE---GWSLPSPWSSVEKESRKIFGNVSPLVVAHR 751 (1142)
Q Consensus 682 ksYTVY~I~Vksg~-------~eWtV~RRYSDF~~LHqrLke~fp~~---~l~LP~~p~sV~K~PKKlfGn~speFIEeR 751 (1142)
+.||+|+|++++.. ..|+|+||||||.+||+.|.+.|+.. +..+|+.+ +|++||+++++|||+|
T Consensus 15 ~gyt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~p------~k~~~g~~d~~fIe~R 88 (118)
T cd07287 15 KGYTVYKVTARIVSRKNPEDVQEIVVWKRYSDFKKLHKDLWQIHKNLCRQSELFPPFA------KAKVFGRFDESVIEER 88 (118)
T ss_pred CCeEEEEEEEEecCCCCcccceeEEEeCCchHHHHHHHHHHHhccccccCCcccCCCC------CceeecCCCHHHHHHH
Confidence 35999999987642 47999999999999999999988752 22234322 4889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCcccccccccc
Q 001141 752 SVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 752 Rk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
|++||.||+.|++|+ .+..+.+|++||.-
T Consensus 89 R~~Le~fL~~i~~~p-~l~~s~~~~~Fl~~ 117 (118)
T cd07287 89 RQCAEDLLQFSANIP-ALYNSSQLEDFFKG 117 (118)
T ss_pred HHHHHHHHHHHhcCc-cccCChHHHHHhcC
Confidence 999999999999975 67899999999964
No 36
>cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized proteins containing an N-terminal RUN domain and a C-terminal PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. The RUN domain is found in GTPases in the Rap and Rab families and may play a role in Ras-like signaling pathways.
Probab=99.71 E-value=3.1e-17 Score=159.15 Aligned_cols=93 Identities=26% Similarity=0.473 Sum_probs=81.6
Q ss_pred cccccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCCHHHHHHHHHHHHHH
Q 001141 680 GVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQEC 758 (1142)
Q Consensus 680 GvksYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~~-l~LP~~p~sV~K~PKKlfGn~speFIEeRRk~LE~Y 758 (1142)
|.+.||+|.|+|+.+...|.|.|||+||.+||++|++.++... ++|| ||+++|+++++|||+||.+||.|
T Consensus 14 ~~~~y~vY~I~v~~~~~~w~V~RRYseF~~L~~~L~~~~~~~~~~~~P---------~Kk~~g~~~~~~ie~Rr~~Le~y 84 (118)
T cd07277 14 GSDAHHVYQVYIRIRDDEWNVYRRYSEFYELHKKLKKKFPVVRSFDFP---------PKKAIGNKDAKFVEERRKRLQVY 84 (118)
T ss_pred CCCCEEEEEEEEEECCCEEEEEecHHHHHHHHHHHHHHCCCCCCCCCC---------CCCccCCCCHHHHHHHHHHHHHH
Confidence 5689999999999998999999999999999999999998753 4777 59999999999999999999999
Q ss_pred HHHHHhcCCCCCCcccccccccccc
Q 001141 759 LQSILHSSSFSSPPNALITFLSQQE 783 (1142)
Q Consensus 759 Lq~LL~h~~~Ls~S~vL~eFLe~s~ 783 (1142)
|+.|+.| .++.+..+..||+-..
T Consensus 85 L~~ll~~--~~~~~~~~~~~~~~~~ 107 (118)
T cd07277 85 LRRVVNT--LIQTSPELTACPSKET 107 (118)
T ss_pred HHHHHHH--HHHhCchhhcCCCHHH
Confidence 9999996 4466666777777654
No 37
>cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of
Probab=99.70 E-value=3.4e-17 Score=160.62 Aligned_cols=91 Identities=21% Similarity=0.218 Sum_probs=77.5
Q ss_pred ccccEEEEEEEEeCC---------ceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccc--------cCC
Q 001141 681 VKEYTVYKIRVWSGK---------DQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKI--------FGN 742 (1142)
Q Consensus 681 vksYTVY~I~Vksg~---------~eWtV~RRYSDF~~LHqrLke~fp~~~-l~LP~~p~sV~K~PKKl--------fGn 742 (1142)
.+.||+|.|++++.. ..|+|+|||+||.+||++|.+.||... ++||+ |++ .++
T Consensus 20 ~~~y~vY~I~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~---------K~~~~~~~~~~~~~ 90 (129)
T cd06864 20 KETYTVYLIETKIVEHESEEGLSKKLSSLWRRYSEFELLRNYLVVTYPYVIVPPLPE---------KRAMFMWQKLSSDT 90 (129)
T ss_pred CCCeEEEEEEEEecCCCcccccccCceEEEeCcHHHHHHHHHHHHHCCCCCCCCCCC---------cceecccccccccC
Confidence 468999999999743 468899999999999999999998754 36773 443 357
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccc
Q 001141 743 VSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 743 ~speFIEeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
++++|||+||++||.||+.|++|+ .+.+++.|+.||+.
T Consensus 91 ~~~~fie~Rr~~Le~fL~~i~~~p-~l~~s~~l~~FL~~ 128 (129)
T cd06864 91 FDPDFVERRRAGLENFLLRVAGHP-ELCQDKIFLEFLTH 128 (129)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCh-hhhcCcHHHHhcCC
Confidence 999999999999999999999974 57899999999974
No 38
>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily cont
Probab=99.70 E-value=3.2e-17 Score=157.98 Aligned_cols=90 Identities=29% Similarity=0.323 Sum_probs=77.9
Q ss_pred cccEEEEEEEEeC-------CceEEEEeecccHHHHHHHHHhhcccCC-----CCCCCCCcccccccccccCCCCHHHHH
Q 001141 682 KEYTVYKIRVWSG-------KDQWEVERRYRDFYTLYRRLKSLSADEG-----WSLPSPWSSVEKESRKIFGNVSPLVVA 749 (1142)
Q Consensus 682 ksYTVY~I~Vksg-------~~eWtV~RRYSDF~~LHqrLke~fp~~~-----l~LP~~p~sV~K~PKKlfGn~speFIE 749 (1142)
++||+|.|++.+. ...|.|+||||||.+||++|++.++... ++|| +|+++|+++++||+
T Consensus 15 ~~~t~Y~I~~~~~~~~~~~~~~~~~V~rRYsdF~~L~~~L~~~~~~~~~~~~~P~lP---------~K~~~g~~~~~~Ie 85 (117)
T cd06881 15 KGYTEYKITSKVFSRSVPEDVSEVVVWKRYSDFKKLHRELSRLHKQLYLSGSFPPFP---------KGKYFGRFDAAVIE 85 (117)
T ss_pred CceEEEEEEEEecCCCCccccceEEEECcHHHHHHHHHHHHHHhhhccccCcCCCCC---------CCcccCCCCHHHHH
Confidence 5799999999852 2489999999999999999999886532 2455 69999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcccccccccc
Q 001141 750 HRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 750 eRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
+||++||.||+.|++|+ .+..+++|+.||+-
T Consensus 86 eRr~~Le~fL~~i~~~p-~l~~s~~~~~Fl~~ 116 (117)
T cd06881 86 ERRQAILELLDFVGNHP-ALYQSSAFQQFFEE 116 (117)
T ss_pred HHHHHHHHHHHHHhCCH-hhhcChHHHHHhcc
Confidence 99999999999999975 67899999999974
No 39
>cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known.
Probab=99.70 E-value=4.5e-17 Score=155.56 Aligned_cols=88 Identities=30% Similarity=0.488 Sum_probs=77.7
Q ss_pred cccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCcccccccccccCCCCHHHHHHHHHHHHHHHHH
Q 001141 682 KEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQS 761 (1142)
Q Consensus 682 ksYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~~l~LP~~p~sV~K~PKKlfGn~speFIEeRRk~LE~YLq~ 761 (1142)
+.||+|.|+|..++..|+|+||||||.+||++|++.++ .++|| +|+ +++++++||++||.+||.||+.
T Consensus 17 ~~y~~Y~I~v~~~~~~~~v~RRYseF~~Lh~~L~~~~~--~p~~P---------~K~-~~~~~~~~ie~Rr~~Le~yL~~ 84 (110)
T cd06880 17 KPYTVFTIEVLVNGRRHTVEKRYSEFHALHKKLKKSIK--TPDFP---------PKR-VRNWNPKVLEQRRQGLEAYLQG 84 (110)
T ss_pred CCeEEEEEEEEECCeEEEEEccHHHHHHHHHHHHHHCC--CCCCC---------CCC-ccCCCHHHHHHHHHHHHHHHHH
Confidence 68999999999988999999999999999999999887 34667 466 4789999999999999999999
Q ss_pred HHhcCCCCCCccccccccccccc
Q 001141 762 ILHSSSFSSPPNALITFLSQQES 784 (1142)
Q Consensus 762 LL~h~~~Ls~S~vL~eFLe~s~s 784 (1142)
|+.++. .+.+|.+||+...+
T Consensus 85 ll~~~~---~s~~l~~FL~~~~~ 104 (110)
T cd06880 85 LLKINE---LPKQLLDFLGVRHF 104 (110)
T ss_pred HHcCcc---ccHHHHHHhCCCCC
Confidence 999754 57889999998653
No 40
>cd06871 PX_MONaKA The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=99.70 E-value=3.8e-17 Score=158.45 Aligned_cols=91 Identities=31% Similarity=0.481 Sum_probs=79.1
Q ss_pred cccccEEEEEEEEeC---CceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCcccccccccccCCCCHHHHHHHHHHHH
Q 001141 680 GVKEYTVYKIRVWSG---KDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQ 756 (1142)
Q Consensus 680 GvksYTVY~I~Vksg---~~eWtV~RRYSDF~~LHqrLke~fp~~~l~LP~~p~sV~K~PKKlfGn~speFIEeRRk~LE 756 (1142)
+.++||+|.|+|+++ ...|+|+||||||.+||++|+... ..++|| ||+++|+++++||++||.+||
T Consensus 17 ~~~~~t~Y~I~v~~~~~~~~~w~V~RRYsdF~~Lh~~L~~~~--~~~plP---------~K~~~g~~~~~~ie~Rr~~Le 85 (120)
T cd06871 17 NIQSHTEYIIRVQRGPSPENSWQVIRRYNDFDLLNASLQISG--ISLPLP---------PKKLIGNMDREFIAERQQGLQ 85 (120)
T ss_pred CccCcEEEEEEEEECCcCCceeEEEeeHHHHHHHHHHHHHcC--CCCCCC---------CccccCCCCHHHHHHHHHHHH
Confidence 357899999999874 468999999999999999998632 234677 599999999999999999999
Q ss_pred HHHHHHHhcCCCCCCccccccccccc
Q 001141 757 ECLQSILHSSSFSSPPNALITFLSQQ 782 (1142)
Q Consensus 757 ~YLq~LL~h~~~Ls~S~vL~eFLe~s 782 (1142)
.||+.|++|+ .++.++.++.||++.
T Consensus 86 ~yL~~l~~~p-~l~~s~~~~~FL~~~ 110 (120)
T cd06871 86 NYLNVILMNP-ILASCLPVKKFLDPN 110 (120)
T ss_pred HHHHHHHcCh-hhccCHHHHHhcCcc
Confidence 9999999975 579999999999854
No 41
>cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=99.70 E-value=4.9e-17 Score=157.98 Aligned_cols=90 Identities=21% Similarity=0.297 Sum_probs=78.3
Q ss_pred cccccEEEEEEEEeCC-------------ceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCCH
Q 001141 680 GVKEYTVYKIRVWSGK-------------DQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVSP 745 (1142)
Q Consensus 680 GvksYTVY~I~Vksg~-------------~eWtV~RRYSDF~~LHqrLke~fp~~~-l~LP~~p~sV~K~PKKlfGn~sp 745 (1142)
+.++||+|+|.+.+.. .+|.|.||||||.+||++|++.||... ++|| +|++++ ++
T Consensus 16 ~~~~y~~Y~I~~~t~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP---------~K~~~~--~~ 84 (120)
T cd06868 16 TSSGHVLYQIVVVTRLAAFKSAKHKEEDVVQFMVSKKYSEFEELYKKLSEKYPGTILPPLP---------RKALFV--SE 84 (120)
T ss_pred CCCCeEEEEEEEEeCchhccCcccccCCceeEEEeCCcHHHHHHHHHHHHHCCCCCCCCCC---------CCcccC--CH
Confidence 4678999999987642 279999999999999999999998754 3677 488887 89
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccc
Q 001141 746 LVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 746 eFIEeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
+||++||++||.||++|++| +.++++++|+.||.+
T Consensus 85 ~~ie~Rr~~Le~fL~~i~~~-p~l~~s~~~~~FL~~ 119 (120)
T cd06868 85 SDIRERRAAFNDFMRFISKD-EKLANCPELLEFLGV 119 (120)
T ss_pred HHHHHHHHHHHHHHHHHHcC-hhhhcCHHHHHHhcC
Confidence 99999999999999999997 467999999999975
No 42
>cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. The specific function of SNX12 has yet to be elucidated.
Probab=99.69 E-value=8.3e-17 Score=158.98 Aligned_cols=107 Identities=21% Similarity=0.331 Sum_probs=84.7
Q ss_pred ceEEEeccccccCCcccccceecccccEEEEEEEEeC-----CceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcc
Q 001141 658 DGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSS 731 (1142)
Q Consensus 658 d~VEVv~~kqk~G~vS~servvGvksYTVY~I~Vksg-----~~eWtV~RRYSDF~~LHqrLke~fp~~~-l~LP~~p~s 731 (1142)
..|.|..+.+ .| .|+++||+|.|+++++ ...|+|+|||+||.|||++|++. +... .+||
T Consensus 4 ~~i~v~dP~~-~~--------~g~~~yt~Y~V~~~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~-~g~~iPpLP----- 68 (132)
T cd07294 4 LEIDIFNPQT-VG--------VGRNRFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERD-SKIVVPPLP----- 68 (132)
T ss_pred EEEEeeCCeE-ec--------CCCCCEEEEEEEEEeCCCCcccceeEEeCCccHHHHHHHHHHHc-CCCccCCCC-----
Confidence 3556655533 33 3789999999999864 36899999999999999999865 3322 3566
Q ss_pred cccccccc---------cCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccc
Q 001141 732 VEKESRKI---------FGNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQES 784 (1142)
Q Consensus 732 V~K~PKKl---------fGn~speFIEeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~s~s 784 (1142)
+|++ .|+++++|||+||++||.||++|++|+ .++.+..|+.||+.+..
T Consensus 69 ----~K~~~~~~~~~~~~~~~~~~fie~Rr~~Le~FL~~i~~hp-~l~~~~~l~~FL~~~~~ 125 (132)
T cd07294 69 ----GKALKRQLPFRGDEGIFEESFIEERRQGLEQFINKIAGHP-LAQNERCLHMFLQDETI 125 (132)
T ss_pred ----CCceeccccccccccCCCHHHHHHHHHHHHHHHHHHHcCc-ccccChHHHHhcCCCCc
Confidence 3554 247899999999999999999999985 68999999999998753
No 43
>cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX15 contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. It plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of t
Probab=99.69 E-value=6.7e-17 Score=156.74 Aligned_cols=93 Identities=20% Similarity=0.185 Sum_probs=76.4
Q ss_pred cccEEEEEEEEeC-------CceEEEEeecccHHHHHHHHHhhcccCC---CCCCCCCcccccccccccCCCCHHHHHHH
Q 001141 682 KEYTVYKIRVWSG-------KDQWEVERRYRDFYTLYRRLKSLSADEG---WSLPSPWSSVEKESRKIFGNVSPLVVAHR 751 (1142)
Q Consensus 682 ksYTVY~I~Vksg-------~~eWtV~RRYSDF~~LHqrLke~fp~~~---l~LP~~p~sV~K~PKKlfGn~speFIEeR 751 (1142)
+.||+|+|+++.. ...|+|+||||||.+||+.|...++... ..+|+.| +|+++|+++++|||+|
T Consensus 15 ~gyt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~P------~K~~~g~f~~~fIeeR 88 (118)
T cd07288 15 KGYTEYKVTAQFISKKQPEDVKEVVVWKRYSDLKKLHGELAYTHRNLFRRQEEFPPFP------RAQVFGRFEAAVIEER 88 (118)
T ss_pred CCcEEEEEEEEecCCCCCccceEEEEECCchHHHHHHHHHHHhcccccccCCccCCCC------CceeeccCCHHHHHHH
Confidence 3599999998753 2589999999999999999997664421 1233222 4889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCcccccccccc
Q 001141 752 SVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 752 Rk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
|++||.||+.|++|+ .++.+.+|++||+-
T Consensus 89 R~~Le~fL~~i~~~p-~l~~s~~~~~FL~~ 117 (118)
T cd07288 89 RNAAEAMLLFTVNIP-ALYNSPQLKEFFRD 117 (118)
T ss_pred HHHHHHHHHHHhCCh-hhcCChHHHHHHhc
Confidence 999999999999985 67899999999973
No 44
>cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p40phox contains an N-terminal PX domain, a central SH3 domain that binds p47phox, and a C-terminal PB1 domain that interacts with p67phox. It is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. The PX domain is a phospholipid-binding module involved in the membrane targeting of proteins. The p40phox
Probab=99.67 E-value=1.3e-16 Score=155.49 Aligned_cols=95 Identities=23% Similarity=0.379 Sum_probs=81.5
Q ss_pred ecccccEEEEEEEEeC-CceEEEEeecccHHHHHHHHHhhcccC---------CCCCCCCCcccccccccccCCCCHHHH
Q 001141 679 VGVKEYTVYKIRVWSG-KDQWEVERRYRDFYTLYRRLKSLSADE---------GWSLPSPWSSVEKESRKIFGNVSPLVV 748 (1142)
Q Consensus 679 vGvksYTVY~I~Vksg-~~eWtV~RRYSDF~~LHqrLke~fp~~---------~l~LP~~p~sV~K~PKKlfGn~speFI 748 (1142)
.|.+.|++|.|+|... +..|+|+|||+||.+||.+|++.||.. .++|| +|+++|+.+ +|+
T Consensus 15 ~~~~~y~vY~I~v~~~~~~~~~V~RRYseF~~L~~~L~~~fp~~~~~~~~~~~lP~lP---------~k~~~~~~~-~~~ 84 (123)
T cd06882 15 RGFTNYYVFVIEVKTKGGSKYLIYRRYRQFFALQSKLEERFGPEAGSSAYDCTLPTLP---------GKIYVGRKA-EIA 84 (123)
T ss_pred eCCCCEEEEEEEEEEcCCCEEEEEEEHHHHHHHHHHHHHhCCcccccCCCCCccCCCC---------CCeecCccH-HHH
Confidence 3678999999999864 468999999999999999999999853 12455 588889865 999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcccccccccccc
Q 001141 749 AHRSVLIQECLQSILHSSSFSSPPNALITFLSQQE 783 (1142)
Q Consensus 749 EeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~s~ 783 (1142)
++||.+||.||+.|+++++.++.++.|+.||....
T Consensus 85 e~Rr~~Le~yl~~Ll~~p~~i~~~~~v~~Fl~~~~ 119 (123)
T cd06882 85 ERRIPLLNRYMKELLSLPVWVLMDEDVRLFFYQTE 119 (123)
T ss_pred HHHHHHHHHHHHHHHcCCHHhcCCHHHHHHhCCCc
Confidence 99999999999999998776888899999998754
No 45
>cd06883 PX_PI3K_C2 The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They are also involved in the regulation of clathrin-mediated membrane trafficking as well as ATP-dependent priming of neurosecretory granule exocytosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and d
Probab=99.66 E-value=2.1e-16 Score=150.97 Aligned_cols=92 Identities=22% Similarity=0.358 Sum_probs=79.8
Q ss_pred ccccEEEEEEEEeC--CceEEEEeecccHHHHHHHHHhhcccCCC-CCCCCCcccccccccccCC-CCHHHHHHHHHHHH
Q 001141 681 VKEYTVYKIRVWSG--KDQWEVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSVEKESRKIFGN-VSPLVVAHRSVLIQ 756 (1142)
Q Consensus 681 vksYTVY~I~Vksg--~~eWtV~RRYSDF~~LHqrLke~fp~~~l-~LP~~p~sV~K~PKKlfGn-~speFIEeRRk~LE 756 (1142)
...|++|.|+|+.. +..|+|.|||+||.+||++|++.||...+ .|| +|+++++ .+++++++|+++||
T Consensus 13 ~~~~~vY~I~V~~~~~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lp~lP---------~k~~~~~~~~~~~~e~R~~~Le 83 (109)
T cd06883 13 PEKYYIYVVKVTRENQTEPSFVFRTFEEFQELHNKLSLLFPSLKLPSFP---------ARVVLGRSHIKQVAERRKIELN 83 (109)
T ss_pred CCceEEEEEEEEECCCCCeEEEEecHHHHHHHHHHHHHHCCCCcCCCCC---------CCcccCccchhHHHHHHHHHHH
Confidence 35799999999875 36899999999999999999999987543 566 3677776 56789999999999
Q ss_pred HHHHHHHhcCCCCCCcccccccccc
Q 001141 757 ECLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 757 ~YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
.||+.|+++++.+++++.+..||.+
T Consensus 84 ~YL~~Ll~~~~~i~~s~~v~~F~~~ 108 (109)
T cd06883 84 SYLKSLFNASPEVAESDLVYTFFHP 108 (109)
T ss_pred HHHHHHHcCCHHHhcCHHHHHhcCC
Confidence 9999999987789999999999975
No 46
>cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regul
Probab=99.64 E-value=7.6e-16 Score=151.17 Aligned_cols=90 Identities=28% Similarity=0.400 Sum_probs=79.5
Q ss_pred ccccEEEEEEEEeCC-----ceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCC--CHHHHHHHH
Q 001141 681 VKEYTVYKIRVWSGK-----DQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNV--SPLVVAHRS 752 (1142)
Q Consensus 681 vksYTVY~I~Vksg~-----~eWtV~RRYSDF~~LHqrLke~fp~~~-l~LP~~p~sV~K~PKKlfGn~--speFIEeRR 752 (1142)
.+.||+|.|+|+... ..|.|.|||+||.+||++|++.||... ++|| +|+++++. +++||++||
T Consensus 35 ~k~~~~Y~I~v~~~~~~~~~~~w~V~RRYseF~~Lh~~L~~~~~~~~~p~~P---------~K~~~~~~~~~~~~ie~Rr 105 (133)
T cd06876 35 GKEFVVYLIEVQRLNNDDQSSGWVVARRYSEFLELHKYLKKRYPGVLKLDFP---------QKRKISLKYSKTLLVEERR 105 (133)
T ss_pred CceEEEEEEEEEEcCCCCCcccEEEEeEhHHHHHHHHHHHHHCcCCCCCCCC---------ccccccCccCCHHHHHHHH
Confidence 468999999999843 589999999999999999999998753 4677 58888886 899999999
Q ss_pred HHHHHHHHHHHhcCCCCCCccccccccc
Q 001141 753 VLIQECLQSILHSSSFSSPPNALITFLS 780 (1142)
Q Consensus 753 k~LE~YLq~LL~h~~~Ls~S~vL~eFLe 780 (1142)
.+||.||+.|+.++ .++++++|..||+
T Consensus 106 ~~Le~yL~~Ll~~~-~l~~s~~l~~FLs 132 (133)
T cd06876 106 KALEKYLQELLKIP-EVCEDEEFRKFLS 132 (133)
T ss_pred HHHHHHHHHHHcCc-cccCChHHHHhhc
Confidence 99999999999975 6899999999995
No 47
>cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=99.64 E-value=6e-16 Score=153.98 Aligned_cols=89 Identities=20% Similarity=0.293 Sum_probs=77.7
Q ss_pred cEEEEEEEEeCC-----ceEEEEeecccHHHHHHHHHhhcccCCC-CCCCCCcccccccccccCCCCHHHHHHHHHHHHH
Q 001141 684 YTVYKIRVWSGK-----DQWEVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQE 757 (1142)
Q Consensus 684 YTVY~I~Vksg~-----~eWtV~RRYSDF~~LHqrLke~fp~~~l-~LP~~p~sV~K~PKKlfGn~speFIEeRRk~LE~ 757 (1142)
-+.|.|+|..+. ..|.|.||||||.+||++|++.|+...+ ++| ||+++++++++|||+||++||.
T Consensus 44 ~~~y~VqV~v~~~~~~~~~w~V~RRYSDF~~L~~~L~~~~p~~~lPplP---------pK~~l~~~~~~fiEeRR~gLE~ 114 (138)
T cd06879 44 DKFYRVQVGVQSPEGITTMRGVLRRFNDFLKLHTDLKKLFPKKKLPAAP---------PKGLLRMKNRALLEERRHSLEE 114 (138)
T ss_pred eEEEEEEEeecCCCCcceeeeeecCchHHHHHHHHHHHHCCCCcCCCCC---------CcccccCCCHHHHHHHHHHHHH
Confidence 367889888763 4899999999999999999999987533 456 6999999999999999999999
Q ss_pred HHHHHHhcCCCCCCccccccccccc
Q 001141 758 CLQSILHSSSFSSPPNALITFLSQQ 782 (1142)
Q Consensus 758 YLq~LL~h~~~Ls~S~vL~eFLe~s 782 (1142)
||++|++++ .++.+.+++.||+..
T Consensus 115 fLq~Ll~~p-~l~~s~~v~~FLele 138 (138)
T cd06879 115 WMGKLLSDI-DLSRSVPVASFLELE 138 (138)
T ss_pred HHHHHHcCc-cccCCHHHHHHhCCC
Confidence 999999975 589999999999863
No 48
>cd06884 PX_PI3K_C2_68D The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases similar to the Drosophila PI3K_68D protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a
Probab=99.64 E-value=6.1e-16 Score=148.86 Aligned_cols=106 Identities=25% Similarity=0.319 Sum_probs=89.5
Q ss_pred cceEEEeccccccCCcccccceecccccEEEEEEEEe--CCceEEEEeecccHHHHHHHHHhhcccCCC-CCCCCCcccc
Q 001141 657 IDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWS--GKDQWEVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSVE 733 (1142)
Q Consensus 657 Id~VEVv~~kqk~G~vS~servvGvksYTVY~I~Vks--g~~eWtV~RRYSDF~~LHqrLke~fp~~~l-~LP~~p~sV~ 733 (1142)
|..|+|.+..++. +.+.|++|.|+|+. +...|.|+|||+||.+||++|++.||...+ +||
T Consensus 1 i~~v~v~~~~kr~----------~~~~~yvY~I~V~~~~~~~~~~V~RrYseF~~Lh~~L~~~FP~~~lp~LP------- 63 (111)
T cd06884 1 IVRVTVVGFQKRY----------DPEKYYVYVVEVTRENQASPQHVFRTYKEFLELYQKLCRKFPLAKLHPLS------- 63 (111)
T ss_pred CeEEEEEEEEEEe----------cCCCeEEEEEEEEEcCCCceEEEEeEHHHHHHHHHHHHHHCCCCCCCCCC-------
Confidence 4567787765553 46789999999974 347899999999999999999999997554 566
Q ss_pred cccccccCC-CCHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccc
Q 001141 734 KESRKIFGN-VSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 734 K~PKKlfGn-~speFIEeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
+|.++|+ ..+++.|+|++.||.||+.|++.++.++.++.+..|+.+
T Consensus 64 --~k~~~~~~~~~~v~e~R~~~L~~Yl~~Ll~~~~~is~~~~v~~FF~p 110 (111)
T cd06884 64 --TGSHVGRSNIKSVAEKRKQDIQQFLNSLFKMAEEVSHSDLVYTFFHP 110 (111)
T ss_pred --CceeecCCcchHHHHHHHHHHHHHHHHHHcCCHHHhcChHHHHhcCc
Confidence 3667776 678999999999999999999998999999999999975
No 49
>cd06874 PX_KIF16B_SNX23 The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. KIF16B, also called sorting nexin 23 (SNX23), is a family-3 kinesin which harbors an N-terminal kinesin motor domain containing ATP and microtubule binding sites, a ForkHead Associated (FHA) domain, and a C-terminal PX domain. The PX domain of KIF16B binds to phosphatidylinositol-3-phosphate (PI3P) in early endosomes and plays a role in the transport of early endosomes to the plus end of microtubules. By regulating early endosome plus end motility, KIF16B modulates the balance between recycling and degradation of receptors. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endoso
Probab=99.62 E-value=1.2e-15 Score=149.88 Aligned_cols=86 Identities=22% Similarity=0.356 Sum_probs=75.2
Q ss_pred cccccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCCHHHHHHHHHHHHHH
Q 001141 680 GVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQEC 758 (1142)
Q Consensus 680 GvksYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~~-l~LP~~p~sV~K~PKKlfGn~speFIEeRRk~LE~Y 758 (1142)
|.+.|++|.|+++.++..|+|+|||+||.+||++|++.||... ++|| +|++||+.+++|||+||.+||.|
T Consensus 14 ~~~~y~vY~I~v~~~~~~w~V~RRYseF~~Lh~~L~~~~p~~~~~~fP---------~Kk~~g~~~~~~ie~Rr~~Le~y 84 (127)
T cd06874 14 GKDEHFEFEVKITVLDETWTVFRRYSRFRELHKTMKLKYPEVAALEFP---------PKKLFGNKSERVAKERRRQLETY 84 (127)
T ss_pred CCCcEEEEEEEEEECCcEEEEEeeHHHHHHHHHHHHHHcCCCccCCCC---------CceecCCCCHHHHHHHHHHHHHH
Confidence 5678999999999988899999999999999999999998743 4677 59999999999999999999999
Q ss_pred HHHHHhcCCCCCCccc
Q 001141 759 LQSILHSSSFSSPPNA 774 (1142)
Q Consensus 759 Lq~LL~h~~~Ls~S~v 774 (1142)
|+.|++....+..+..
T Consensus 85 L~~Ll~~~~~~~~~~~ 100 (127)
T cd06874 85 LRNFFSVCLKLPACPL 100 (127)
T ss_pred HHHHHHhchhccCCcc
Confidence 9999986555555543
No 50
>KOG2527 consensus Sorting nexin SNX11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=2.8e-16 Score=154.43 Aligned_cols=121 Identities=23% Similarity=0.329 Sum_probs=90.7
Q ss_pred CCCCCCcCCCCccccceEEEeccccccCCcccccceecccccEEEEEEEEeCC-----ceEEEEeecccHHHHHHHHHhh
Q 001141 643 GTDDAYPLTLVPLRIDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGK-----DQWEVERRYRDFYTLYRRLKSL 717 (1142)
Q Consensus 643 s~ddAY~l~~~~~~Id~VEVv~~kqk~G~vS~servvGvksYTVY~I~Vksg~-----~eWtV~RRYSDF~~LHqrLke~ 717 (1142)
+..++|..+.+ +..|+|.++++ +| .|.+.||.|+|.++++. ....|+||||||.|||++|+..
T Consensus 6 ~~~e~y~~p~n---fLeI~V~nPrt-~~--------~~~~~ytdYEI~~rTN~p~F~~k~S~VRRRYsdFewlr~~Ler~ 73 (144)
T KOG2527|consen 6 TLEEAYAPPEN---FLEIDVINPRT-HG--------DGKNRYTDYEIRCRTNSPSFKKKESCVRRRYSDFEWLRKRLERE 73 (144)
T ss_pred chhhhhcCccc---eEEEEeeCCcc-cc--------cccccceeEEEEEecCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 45677865555 55567888877 33 36789999999999863 5679999999999999999974
Q ss_pred cccCCCCCCCCCcccccccccccCCCC-HHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccc
Q 001141 718 SADEGWSLPSPWSSVEKESRKIFGNVS-PLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQES 784 (1142)
Q Consensus 718 fp~~~l~LP~~p~sV~K~PKKlfGn~s-peFIEeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~s~s 784 (1142)
-. .+.+|+.| .|.++.++. .+|||+||++||.||++|+.|+ ++++.+.|..||.....
T Consensus 74 s~--kvvvP~LP------gK~~~~~~~fre~IEeRrqgLe~fl~kVaghp-L~q~~~~Lh~Flq~~~~ 132 (144)
T KOG2527|consen 74 SG--KVVVPELP------GKALFRQLPFREFIEERRQGLEVFLRKVAGHP-LLQNERCLHLFLQSELI 132 (144)
T ss_pred cc--cccCCCCC------cHHHHhcCchHHHHHHHHHHHHHHHHHHhCch-hhhccHHHHHHHHhhhh
Confidence 32 23344311 255554422 3999999999999999999985 46788899999987643
No 51
>cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX27 contains an N-terminal PDZ domain followed by a PX domain and a Ras-Associated (RA) domain. It binds G protein-gated potassium (Kir3) channels, which play a role in neuronal excitability control, through its PDZ domain. SNX27 downregulates Kir3 channels by promoting their movement in the endosome, reducing surface
Probab=99.61 E-value=1.2e-15 Score=145.26 Aligned_cols=86 Identities=24% Similarity=0.341 Sum_probs=74.5
Q ss_pred cccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCCHHHHHHHHHHHHHHHH
Q 001141 682 KEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQ 760 (1142)
Q Consensus 682 ksYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~~-l~LP~~p~sV~K~PKKlfGn~speFIEeRRk~LE~YLq 760 (1142)
++|++|.|++. ..|.|.||||||.+||++|++.++... .+|| +|++++ ++++|||+||++||.||+
T Consensus 19 ~~yvvY~I~~~---~~~~v~rRyseF~~L~~~L~~~~~~~~~p~lP---------~K~~~~-~~~~~ie~Rr~~Le~fL~ 85 (106)
T cd06886 19 EKFVVYNIYMA---GRQLCSRRYREFANLHQNLKKEFPDFQFPKLP---------GKWPFS-LSEQQLDARRRGLEQYLE 85 (106)
T ss_pred CcEEEEEEEEc---CCEEEEechHHHHHHHHHHHHHcCCCCCCCCC---------CCCcCC-CCHHHHHHHHHHHHHHHH
Confidence 58999999985 279999999999999999999998754 3555 577774 689999999999999999
Q ss_pred HHHhcCCCCCCcccccccccc
Q 001141 761 SILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 761 ~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
.|++|+ .+..++.|+.||+-
T Consensus 86 ~l~~~p-~l~~s~~~~~FL~~ 105 (106)
T cd06886 86 KVCSIR-VIGESDIMQDFLSD 105 (106)
T ss_pred HHhcCc-ccccCHHHHHHhcc
Confidence 999974 57899999999973
No 52
>cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membr
Probab=99.59 E-value=4.5e-15 Score=148.11 Aligned_cols=101 Identities=22% Similarity=0.250 Sum_probs=79.7
Q ss_pred ccccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccCCCCCCCCC--------------------ccccccccccc
Q 001141 681 VKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPW--------------------SSVEKESRKIF 740 (1142)
Q Consensus 681 vksYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~~l~LP~~p--------------------~sV~K~PKKlf 740 (1142)
...|++|.|+|+.+...|+|.|||+||.+||++|+..++...++||+.- ..++..|++..
T Consensus 20 ~~~~~~Y~Iev~~g~~~W~V~RRy~~F~~Lh~~L~~~~~~l~~p~p~k~~~~~~~~~~~~~~~~~~~~~~~lP~lP~~~~ 99 (140)
T cd06895 20 LLNPNLYTIELQHGQFTWTIKRRYKHFQELHQALKLYRALLRIPLPTRRHKEERLSLKRSRKPEREKKNRRLPSLPALPD 99 (140)
T ss_pred CCceEEEEEEEEECCEEEEEEeeHHHHHHHHHHHHHhcccccccCchHHhhhhhhccccccccccccccccCCCCCCccc
Confidence 4579999999999999999999999999999999987655555555210 01222344443
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccc
Q 001141 741 GNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQ 782 (1142)
Q Consensus 741 Gn~speFIEeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~s 782 (1142)
...+++++++|+++||.||+.|++++ .++++.++.+||+.+
T Consensus 100 ~~~~~~~ie~Rr~~Le~YL~~LL~~~-~~rn~~~~~~FLeVS 140 (140)
T cd06895 100 ILVSEEQLDSRKKQLENYLQNLLKIP-DYRNHPETLEFLEVS 140 (140)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHcCh-hhhcCHHHHhhhccC
Confidence 33489999999999999999999974 679999999999863
No 53
>smart00312 PX PhoX homologous domain, present in p47phox and p40phox. Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.
Probab=99.59 E-value=3.1e-15 Score=137.58 Aligned_cols=90 Identities=31% Similarity=0.522 Sum_probs=72.9
Q ss_pred ccccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccCCC-CCCCCCcccccccccccC---CCCHHHHHHHHHHHH
Q 001141 681 VKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSVEKESRKIFG---NVSPLVVAHRSVLIQ 756 (1142)
Q Consensus 681 vksYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~~l-~LP~~p~sV~K~PKKlfG---n~speFIEeRRk~LE 756 (1142)
...|++|.|++..+...|.|.|||+||.+||++|...+|...+ +|| +|++++ ++++++|++|+.+||
T Consensus 11 ~~~~~~~~v~~~~~~~~~~v~RRysdF~~L~~~L~~~~~~~~lP~lP---------~k~~~~~~~~~~~~~i~~R~~~L~ 81 (105)
T smart00312 11 KHYYYVIEIETKTGLEEWTVSRRYSDFLELHSKLKKHFPRRILPPLP---------PKKLFGRLNNFSEEFIEKRRRGLE 81 (105)
T ss_pred ceEEEEEEEEECCCCceEEEEEEHHHHHHHHHHHHHHCcCCCCCCCC---------CchhcccCCcCCHHHHHHHHHHHH
Confidence 3455566665555567999999999999999999999986543 566 467775 589999999999999
Q ss_pred HHHHHHHhcCCCCCC-ccccccccc
Q 001141 757 ECLQSILHSSSFSSP-PNALITFLS 780 (1142)
Q Consensus 757 ~YLq~LL~h~~~Ls~-S~vL~eFLe 780 (1142)
.||+.|++++. +.. +++|..||+
T Consensus 82 ~yL~~l~~~~~-~~~~s~~~~~Fl~ 105 (105)
T smart00312 82 RYLQSLLNHPE-LINESEVVLSFLE 105 (105)
T ss_pred HHHHHHHcCHh-hhccChHHHHhcC
Confidence 99999999765 566 889999985
No 54
>cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some me
Probab=99.59 E-value=2.9e-15 Score=142.12 Aligned_cols=88 Identities=19% Similarity=0.373 Sum_probs=76.6
Q ss_pred cccccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCCHHHHHHHHHHHHHH
Q 001141 680 GVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQEC 758 (1142)
Q Consensus 680 GvksYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~~-l~LP~~p~sV~K~PKKlfGn~speFIEeRRk~LE~Y 758 (1142)
+.++||+|.|.|. ..|.+.||||||.+||++|.+.++... ++|| ||+++ +++.+|||+||.+||.|
T Consensus 14 ~~~~y~~Y~I~v~---~~~~~~rRYseF~~L~~~L~~~~~~~~~p~lP---------~K~~~-~~~~~~ie~Rr~~Le~y 80 (104)
T cd06885 14 GGSTYVAYNIHIN---GVLHCSVRYSQLHGLNEQLKKEFGNRKLPPFP---------PKKLL-PLTPAQLEERRLQLEKY 80 (104)
T ss_pred CCCcEEEEEEEEC---CcEEEEechHHHHHHHHHHHHHcCCCCCCCCC---------CCccc-cCCHHHHHHHHHHHHHH
Confidence 4589999999985 468899999999999999999998743 4677 58888 57889999999999999
Q ss_pred HHHHHhcCCCCCCcccccccccc
Q 001141 759 LQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 759 Lq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
|+.|++|+ .+..++.++.||..
T Consensus 81 L~~l~~~~-~l~~s~~~~~FL~~ 102 (104)
T cd06885 81 LQAVVQDP-RIANSDIFNSFLLN 102 (104)
T ss_pred HHHHhcCh-hhccCHHHHHHHHh
Confidence 99999975 67899999999863
No 55
>cd06869 PX_UP2_fungi The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=99.57 E-value=1e-14 Score=141.95 Aligned_cols=87 Identities=25% Similarity=0.305 Sum_probs=75.3
Q ss_pred ecccccEEEEEEEEeCCc---eEEEEeecccHHHHHHHHHhhcccCCC-CCCCCCcccccccccccCCCCHHHHHHHHHH
Q 001141 679 VGVKEYTVYKIRVWSGKD---QWEVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSVEKESRKIFGNVSPLVVAHRSVL 754 (1142)
Q Consensus 679 vGvksYTVY~I~Vksg~~---eWtV~RRYSDF~~LHqrLke~fp~~~l-~LP~~p~sV~K~PKKlfGn~speFIEeRRk~ 754 (1142)
.+.+.|++|.|+|+.+.. .|.|.|||+||.+||++|++.||...+ +|| +|++ .++|+||.+
T Consensus 28 ~~~~~~~~Y~I~V~~~~~~~~~~~V~RRYsdF~~L~~~L~~~fp~~~lP~lP---------~K~~------~~~E~Rr~~ 92 (119)
T cd06869 28 NRSKHHYEFIIRVRREGEEYRTIYVARRYSDFKKLHHDLKKEFPGKKLPKLP---------HKDK------LPREKLRLS 92 (119)
T ss_pred cCCCceEEEEEEEEECCCCCCceEEEeeHHHHHHHHHHHHHHCcCCCCCCCc---------CCch------hHHHHHHHH
Confidence 467889999999999754 999999999999999999999997543 566 3554 688999999
Q ss_pred HHHHHHHHHhcCCCCCCcccccccccc
Q 001141 755 IQECLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 755 LE~YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
||.||+.|+++ +.++.+.+|+.||..
T Consensus 93 Le~yL~~Ll~~-p~l~~s~~~~~FL~~ 118 (119)
T cd06869 93 LRQYLRSLLKD-PEVAHSSILQEFLTS 118 (119)
T ss_pred HHHHHHHHhcC-hhhhcChHHHHhhCC
Confidence 99999999996 567999999999974
No 56
>cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting.
Probab=99.53 E-value=4.3e-14 Score=128.28 Aligned_cols=91 Identities=35% Similarity=0.565 Sum_probs=79.3
Q ss_pred cccccEEEEEEEEeCC-ceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCCHHHHHHHHHHHHH
Q 001141 680 GVKEYTVYKIRVWSGK-DQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQE 757 (1142)
Q Consensus 680 GvksYTVY~I~Vksg~-~eWtV~RRYSDF~~LHqrLke~fp~~~-l~LP~~p~sV~K~PKKlfGn~speFIEeRRk~LE~ 757 (1142)
+.+.|++|.|++..+. ..|.|+|||+||.+||+.|...++... ++|| +|+++++.+.+++++|+.+||.
T Consensus 13 ~~~~~~~Y~i~v~~~~~~~~~v~rrysdF~~L~~~L~~~~~~~~~p~lP---------~k~~~~~~~~~~~~~R~~~L~~ 83 (106)
T cd06093 13 GGKKYVVYIIEVTTQGGEEWTVYRRYSDFEELHEKLKKKFPGVILPPLP---------PKKLFGNLDPEFIEERRKQLEQ 83 (106)
T ss_pred CCCCEEEEEEEEEECCCCeEEEEeehHHHHHHHHHHHHHCCCCccCCCC---------CCcccccCCHHHHHHHHHHHHH
Confidence 4578999999999977 899999999999999999999988443 3666 4777887899999999999999
Q ss_pred HHHHHHhcCCCCCCccccccccc
Q 001141 758 CLQSILHSSSFSSPPNALITFLS 780 (1142)
Q Consensus 758 YLq~LL~h~~~Ls~S~vL~eFLe 780 (1142)
||+.|++++. +..+..+..||+
T Consensus 84 yl~~l~~~~~-~~~~~~~~~Fl~ 105 (106)
T cd06093 84 YLQSLLNHPE-LRNSEELKEFLE 105 (106)
T ss_pred HHHHHhcCcc-cccChHHHHHhC
Confidence 9999999765 567888999986
No 57
>cd06888 PX_FISH The phosphoinositide binding Phox Homology domain of Five SH protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Five SH (FISH), also called Tks5, is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. FISH contains an N-terminal PX domain and five Src homology 3 (SH3) domains. FISH binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. This subfamily also includes proteins with a different number of SH3 domains than FISH, such as Tks4, which contains
Probab=99.52 E-value=4.6e-14 Score=137.52 Aligned_cols=109 Identities=21% Similarity=0.271 Sum_probs=87.5
Q ss_pred cceEEEeccccccCCcccccceecccccEEEEEEEEe-CCceEEEEeecccHHHHHHHHHhhcccCC-------CCCCCC
Q 001141 657 IDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWS-GKDQWEVERRYRDFYTLYRRLKSLSADEG-------WSLPSP 728 (1142)
Q Consensus 657 Id~VEVv~~kqk~G~vS~servvGvksYTVY~I~Vks-g~~eWtV~RRYSDF~~LHqrLke~fp~~~-------l~LP~~ 728 (1142)
|..|.|++..++. +...|.+|.|+|.. ++..|.|+|||+||.+||++|++.||... -.||.-
T Consensus 1 ~~~~~v~~~ekr~----------~~~k~y~Y~i~V~~~dg~~~~v~RrYs~F~~Lh~~L~~~FP~eag~~~~~~r~lP~l 70 (119)
T cd06888 1 VKDVKVIDVEKRR----------APSKHYVYIINVTWSDGSSNVIYRRYSKFFDLQMQLLDKFPIEGGQKDPSQRIIPFL 70 (119)
T ss_pred CeeEEEEEEEEEe----------cCCCcEEEEEEEEEcCCCEEEEEEeHHHHHHHHHHHHHhCchhhccCCCCccccCCC
Confidence 3456777765554 35678899999987 45789999999999999999999999731 023421
Q ss_pred CcccccccccccCCC-CHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccc
Q 001141 729 WSSVEKESRKIFGNV-SPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 729 p~sV~K~PKKlfGn~-speFIEeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
| +|+++|+. ..++.++|++.|+.||+.|+..++.++.++.+..|+++
T Consensus 71 P------~k~~~g~s~~~~~~e~R~~~L~~Yl~~Ll~lp~~Is~~~~v~~FF~p 118 (119)
T cd06888 71 P------GKILFRRSHIRDVAVKRLKPIDEYCKALVRLPPHISQCDEVLRFFEA 118 (119)
T ss_pred C------CCcccCcchhHHHHHHHHHHHHHHHHHHHcCCceeecCHHHHHhcCC
Confidence 1 47788874 46799999999999999999999999999999999876
No 58
>PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ]. PX domains are important phosphoinositide-binding modules that have varying lipid-binding specificities []. The PX domain is approximately 120 residues long [], and folds into a three-stranded beta-sheet followed by three -helices and a proline-rich region that immediately preceeds a membrane-interaction loop and spans approximately eight hydrophobic and polar residues. The PX domain of p47phox binds to the SH3 domain in the same protein []. Phosphorylation of p47(phox), a cytoplasmic activator of the microbicidal phagocyte oxidase (phox), elicits interaction of p47(phox) with phoinositides. The protein phosphorylation-driven conformational change of p47(phox) enables its PX domain to bind to phosphoinositides, the interaction of which plays a crucial role in recruitment of p47(phox) from the cytoplasm to membranes and subsequent activation of the phagocyte oxidase. The lipid-binding activity of this protein is normally suppressed by intramolecular interaction of the PX domain with the C-terminal Src homology 3 (SH3) domain []. The PX domain is conserved from yeast to human. A recent multiple alignment of representative PX domain sequences can be found in [], although showing relatively little sequence conservation, their structure appears to be highly conserved. Although phosphatidylinositol-3-phosphate (PtdIns(3)P) is the primary target of PX domains, binding to phosphatidic acid, phosphatidylinositol-3,4-bisphosphate (PtdIns(3,4)P2), phosphatidylinositol-3,5-bisphosphate (PtdIns(3,5)P2), phosphatidylinositol-4,5-bisphosphate (PtdIns(4,5)P2), and phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3) has been reported as well. The PX-domain is also a protein-protein interaction domain [].; GO: 0005515 protein binding, 0035091 phosphatidylinositol binding, 0007154 cell communication; PDB: 2DYB_A 1H6H_A 2WWE_A 1XTN_B 1XTE_A 2CZO_A 2V6V_B 2V14_A 2I4K_A 3IQ2_A ....
Probab=99.52 E-value=1.6e-14 Score=132.39 Aligned_cols=90 Identities=32% Similarity=0.562 Sum_probs=71.4
Q ss_pred ccEEEEEEEEe--CCceEEEEeecccHHHHHHHHHhhcccCCC-CCCCCCcccccccccccCC---CCHHHHHHHHHHHH
Q 001141 683 EYTVYKIRVWS--GKDQWEVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSVEKESRKIFGN---VSPLVVAHRSVLIQ 756 (1142)
Q Consensus 683 sYTVY~I~Vks--g~~eWtV~RRYSDF~~LHqrLke~fp~~~l-~LP~~p~sV~K~PKKlfGn---~speFIEeRRk~LE 756 (1142)
..++|.++|.. +...|.|+|||+||.+||++|...++...+ +|| +|.++++ .+++++++|+.+|+
T Consensus 18 ~~~~~~~~i~~~~~~~~~~v~rry~dF~~L~~~L~~~~~~~~~p~~P---------~~~~~~~~~~~~~~~~~~R~~~L~ 88 (113)
T PF00787_consen 18 KKTYYIYQIELQDGKESWSVYRRYSDFYELHRKLKKRFPSRKLPPFP---------PKQWFSNSRNLDPEFIEERRQALE 88 (113)
T ss_dssp SEEEEEEEEEETTSSSEEEEEEEHHHHHHHHHHHHHHHTTSGSTSSS---------TSSSSSSSSTTSHHHHHHHHHHHH
T ss_pred CEEEEEEEEEECCCCEEEEEEEEHHHHHHHHHHHhhhhcccccccCC---------ccccccccccccHHHHHHHHHHHH
Confidence 44445555554 457999999999999999999999985432 555 3666664 89999999999999
Q ss_pred HHHHHHHhcCCCCCCccccccccccc
Q 001141 757 ECLQSILHSSSFSSPPNALITFLSQQ 782 (1142)
Q Consensus 757 ~YLq~LL~h~~~Ls~S~vL~eFLe~s 782 (1142)
.||+.|++++. +..+++|..||+.+
T Consensus 89 ~yL~~l~~~~~-~~~s~~l~~FL~~~ 113 (113)
T PF00787_consen 89 KYLQSLLSHPE-LRSSEALKEFLESS 113 (113)
T ss_dssp HHHHHHHTSCH-HHHSHHHHHHHCT-
T ss_pred HHHHHHHcChh-hhCchHHHHhcCCC
Confidence 99999999854 55688999999863
No 59
>cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD1 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It acts as an effector of Rheb in the signaling of the mammalian target of rapamycin (mTOR), a serine/threonine protein kinase that transduces nutrients and other stimuli to regulate many cellular processes. PLD1 also regulates the secretion of the procoagulant von Will
Probab=99.49 E-value=6.3e-14 Score=139.25 Aligned_cols=117 Identities=21% Similarity=0.334 Sum_probs=79.9
Q ss_pred cccceEEEeccccccCCcccccceecccccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCc----
Q 001141 655 LRIDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWS---- 730 (1142)
Q Consensus 655 ~~Id~VEVv~~kqk~G~vS~servvGvksYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~~l~LP~~p~---- 730 (1142)
.+|.++|..+..+. +.+..||+|.|+++.+...|+|.|||+||.+||+.|...-....++||+...
T Consensus 6 ~~i~~~eR~~~~~~----------~~~~~~t~Y~I~v~~g~~~w~V~rRy~~F~~Lh~~L~~~~~~~~~plP~k~~~~~r 75 (135)
T cd07296 6 ARVLEVERFTSTSD----------VKKPSLNVYTIELTHGEFTWQVKRKFKHFQELHRELLRYKAFIRIPIPTRSHTVRR 75 (135)
T ss_pred EEEEEEEEeecccc----------ccccceEEEEEEEEeCCEEEEEEeehHHHHHHHHHHHhcCCCCCCCCCcccchhhc
Confidence 35777777664330 1245799999999999999999999999999999999732222346664111
Q ss_pred -ccc-cccccc--cCC-CCHHHHH----HHHHHHHHHHHHHHhcCCCCCCccccccccccc
Q 001141 731 -SVE-KESRKI--FGN-VSPLVVA----HRSVLIQECLQSILHSSSFSSPPNALITFLSQQ 782 (1142)
Q Consensus 731 -sV~-K~PKKl--fGn-~speFIE----eRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~s 782 (1142)
++. ..+..+ +.+ -+....| +||++||+||+.|++++ ..++.+++.+||+.+
T Consensus 76 ~~~~~~~~~~~p~lp~~~~~~v~e~~~~sRr~~LE~YL~~LL~~~-~~Rn~~a~~eFLeVs 135 (135)
T cd07296 76 QTIKRGEPRHMPSLPRGAEEEAREEQFSSRRKQLEDYLSKLLKMP-MYRNYHATMEFIDVS 135 (135)
T ss_pred cccccccccccccCCCCCCccccccchHHHHHHHHHHHHHHhcCh-hhcCCHHHHhheecC
Confidence 000 000111 111 1222344 89999999999999965 679999999999863
No 60
>cd06887 PX_p47phox The phosphoinositide binding Phox Homology domain of the p47phox subunit of NADPH oxidase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p47phox is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal PX domain, two Src Homology 3 (SH3) domains, and a C-terminal domain that contains PxxP motifs for binding SH3 domains. The PX domain of p47phox is unique in that it contains two distinct basic pockets on the membrane-binding surface: one
Probab=99.49 E-value=9.5e-14 Score=135.27 Aligned_cols=104 Identities=19% Similarity=0.213 Sum_probs=84.8
Q ss_pred ceEEEeccccccCCcccccceecccccEEEEEEEEe-CCceEEEEeecccHHHHHHHHHhhcccC----------CCCCC
Q 001141 658 DGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWS-GKDQWEVERRYRDFYTLYRRLKSLSADE----------GWSLP 726 (1142)
Q Consensus 658 d~VEVv~~kqk~G~vS~servvGvksYTVY~I~Vks-g~~eWtV~RRYSDF~~LHqrLke~fp~~----------~l~LP 726 (1142)
..|.|++..++. -.+.|++|.|+|.. ++..|.|+|||+||.+||++|++.||.- ...||
T Consensus 2 ~~~~~~~~~kr~----------~~~~~y~Y~i~v~~s~~~~~~v~RrYsdF~~L~~~L~~~fp~Eag~~~~~~r~lP~lP 71 (118)
T cd06887 2 RHIALLGFEKRF----------VPSQHYVYMFLVKWQDLSEKLVYRRFTEIYEFHKTLKEMFPIEAGDINKENRIIPHLP 71 (118)
T ss_pred eeEEEEEEEEee----------cCCCcEEEEEEEEEcCCcEEEEEeeHHHHHHHHHHHHHhCCccccccCCCCCcCCCCC
Confidence 456666654432 13689999999876 6678999999999999999999999851 12555
Q ss_pred CCCcccccccccccCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccc
Q 001141 727 SPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQ 782 (1142)
Q Consensus 727 ~~p~sV~K~PKKlfGn~speFIEeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~s 782 (1142)
+|.++++. ++.|+||++|+.||+.|+..++.++.++++..||.+.
T Consensus 72 ---------~k~~~~~~--~v~e~Rr~~L~~Yl~~Ll~lp~~i~~s~~v~~Ff~~~ 116 (118)
T cd06887 72 ---------APKWFDGQ--RAAENRQGTLTEYCSTLLSLPPKISRCPHVLDFFKVR 116 (118)
T ss_pred ---------CCcccCcc--hHHHHHHHHHHHHHHHHHhCCchhhCCHHHHHHhCcC
Confidence 47778873 9999999999999999998888899999999999864
No 61
>cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of Bem1p
Probab=99.41 E-value=5.1e-13 Score=128.25 Aligned_cols=93 Identities=19% Similarity=0.265 Sum_probs=79.5
Q ss_pred cccEEEEEEEEe-CCceEEEEeecccHHHHHHHHHhhcccCC------CCCCCCCcccccccccccCCCCHHHHHHHHHH
Q 001141 682 KEYTVYKIRVWS-GKDQWEVERRYRDFYTLYRRLKSLSADEG------WSLPSPWSSVEKESRKIFGNVSPLVVAHRSVL 754 (1142)
Q Consensus 682 ksYTVY~I~Vks-g~~eWtV~RRYSDF~~LHqrLke~fp~~~------l~LP~~p~sV~K~PKKlfGn~speFIEeRRk~ 754 (1142)
+.++.|.|+|+. ++..|.|+|||+||++||.+|.+.||... ..||. .|+++.+..+.+++++|+.+
T Consensus 12 ~~~y~Y~i~v~~s~~~~~~v~RrY~dFy~Lh~~L~~~fp~eag~~~~~~~lP~-------lP~~~~~~~~~~~~e~R~~~ 84 (112)
T cd06890 12 DNRYWYRVRATLSDGKTRYLCRYYQDFYKLHIALLDLFPAEAGRNSSKRILPY-------LPGPVTDVVNDSISLKRLND 84 (112)
T ss_pred CCEEEEEEEEEEcCCcEEEEEEEHHHHHHHHHHHHHhCcHhhCCCCCCCcCCC-------CCCCccCcchhHHHHHHHHH
Confidence 467899999988 57899999999999999999999998542 23553 35666666789999999999
Q ss_pred HHHHHHHHHhcCCCCCCcccccccccc
Q 001141 755 IQECLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 755 LE~YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
|+.||+.|+.++..++.+..++.||.+
T Consensus 85 L~~Yl~~Ll~~p~~i~~s~~v~~Ff~~ 111 (112)
T cd06890 85 LNEYLNELINLPAYIQTSEVVRDFFAN 111 (112)
T ss_pred HHHHHHHHHcCCHHhccCHHHHHHcCc
Confidence 999999999987688999999999975
No 62
>cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domai
Probab=99.40 E-value=7.9e-13 Score=127.45 Aligned_cols=91 Identities=20% Similarity=0.290 Sum_probs=78.1
Q ss_pred cccEEEEEEEEeCC--ceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCC-HHHHHHHHHHHHH
Q 001141 682 KEYTVYKIRVWSGK--DQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVS-PLVVAHRSVLIQE 757 (1142)
Q Consensus 682 ksYTVY~I~Vksg~--~eWtV~RRYSDF~~LHqrLke~fp~~~-l~LP~~p~sV~K~PKKlfGn~s-peFIEeRRk~LE~ 757 (1142)
..|.+|.|+|+..+ ..|.|+|||+||.+||++|++.||... +.|| +|.++|+.+ ++..|+|+.+|+.
T Consensus 14 ~k~y~Y~I~V~~~~~~~~~~I~RrY~eF~~Lh~kLk~~FP~~~lP~LP---------~k~~~g~s~~~~vae~R~~~L~~ 84 (109)
T cd07290 14 SKGYAYVVKVQREGHKEATFVQRTFEEFQELHNKLRLLFPSSKLPSFP---------SRFVIGRSRGEAVAERRKEELNG 84 (109)
T ss_pred CCcEEEEEEEEECCCceeEEEEeeHHHHHHHHHHHHHHCccccCCCCC---------CCcccCccccHHHHHHHHHHHHH
Confidence 45667999998854 459999999999999999999999653 3666 367777754 7999999999999
Q ss_pred HHHHHHhcCCCCCCcccccccccc
Q 001141 758 CLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 758 YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
||+.|+..++.++.++.+..|+.+
T Consensus 85 Yl~~Ll~~~~~Is~s~~v~~FF~p 108 (109)
T cd07290 85 YIWHLIHAPPEVAECDLVYTFFHP 108 (109)
T ss_pred HHHHHHcCChheecCHHHHHhccc
Confidence 999999999999999999999975
No 63
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=99.40 E-value=7.2e-13 Score=132.56 Aligned_cols=89 Identities=15% Similarity=0.276 Sum_probs=73.9
Q ss_pred ccEEEEEEEEeC-----CceE-EEEeecccHHHHHHHHHhhcccCCC-CCCCCCcccccccccc-cCCCCHHHHHHHHHH
Q 001141 683 EYTVYKIRVWSG-----KDQW-EVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSVEKESRKI-FGNVSPLVVAHRSVL 754 (1142)
Q Consensus 683 sYTVY~I~Vksg-----~~eW-tV~RRYSDF~~LHqrLke~fp~~~l-~LP~~p~sV~K~PKKl-fGn~speFIEeRRk~ 754 (1142)
.|..|.+.++++ ..+. .|+|||+||.|||++|...++...+ +|| +|.+ ++.++.+|+++||++
T Consensus 43 ~~~~~~~~~~Tnlp~Fr~~~~~~VrRRysdF~~L~~~L~~~~~~~iVPplP---------~k~~~~~~~~~E~~~~rr~~ 113 (140)
T cd06891 43 KDPIIRFDVTTNLPTFRSSTYKDVRRTYEEFQKLFKYLNGANPETFVPALP---------LPSTSYGSNNEEDARKLKAN 113 (140)
T ss_pred CCeEEEEEEeeCCcccCCCCCCceeeeHHHHHHHHHHHHHHCCCcEeCCCC---------CccccCCCCCHHHHHHHHHH
Confidence 788999998874 3445 7999999999999999998876543 666 3554 477899999999999
Q ss_pred HHHHHHHHHhcCCCCCCcccccccccc
Q 001141 755 IQECLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 755 LE~YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
||.||++|+.|| .|..+..|+.||+.
T Consensus 114 LqrfL~RV~~hP-~L~~d~~l~~FLEs 139 (140)
T cd06891 114 LQRWFNRVCSDP-ILIRDEELRFFIES 139 (140)
T ss_pred HHHHHHHHhCCh-hhccCHHHHHHhcc
Confidence 999999999986 56777789999975
No 64
>cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=99.39 E-value=9.1e-13 Score=127.04 Aligned_cols=90 Identities=22% Similarity=0.326 Sum_probs=76.9
Q ss_pred cccEEEEEEEEeCCc---eEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCC-CCHHHHHHHHHHHH
Q 001141 682 KEYTVYKIRVWSGKD---QWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGN-VSPLVVAHRSVLIQ 756 (1142)
Q Consensus 682 ksYTVY~I~Vksg~~---eWtV~RRYSDF~~LHqrLke~fp~~~-l~LP~~p~sV~K~PKKlfGn-~speFIEeRRk~LE 756 (1142)
+.|.+|.|+|...+. .| |+|||++|.+||++|++.||... ..||+ |.++|+ ...+..|+|++.|+
T Consensus 14 ~k~yvY~i~V~~~~~~~~~~-I~Rry~eF~~Lh~kL~~~Fp~~~lP~lP~---------k~~~grs~~~~vae~R~~~L~ 83 (109)
T cd07289 14 DKHYIYVVRILREGQIEPSF-VFRTFDEFQELHNKLSILFPLWKLPGFPN---------KMVLGRTHIKDVAAKRKVELN 83 (109)
T ss_pred CCeEEEEEEEEECCCceeEE-EEeeHHHHHHHHHHHHHHCCcccCCCCCC---------CeeeCCCcchHHHHHHHHHHH
Confidence 456799999988543 55 99999999999999999999753 36663 677886 34789999999999
Q ss_pred HHHHHHHhcCCCCCCcccccccccc
Q 001141 757 ECLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 757 ~YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
.||+.|++.++.++.++.+..|+.+
T Consensus 84 ~Yl~~Ll~~p~~Is~~d~v~~FF~p 108 (109)
T cd07289 84 SYIQSLMNSSTEVAECDLVYTFFHP 108 (109)
T ss_pred HHHHHHHcCChhhhcChHHHHhccc
Confidence 9999999999999999999999875
No 65
>KOG2528 consensus Sorting nexin SNX9/SH3PX1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=1.1e-12 Score=148.57 Aligned_cols=96 Identities=22% Similarity=0.307 Sum_probs=84.7
Q ss_pred ccceecccccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccCCC-CCCCCCcccccccccccCCCCHHHHHHHHH
Q 001141 675 SERLVGVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSVEKESRKIFGNVSPLVVAHRSV 753 (1142)
Q Consensus 675 servvGvksYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~~l-~LP~~p~sV~K~PKKlfGn~speFIEeRRk 753 (1142)
.+++.|+|+|+.|+++-... .-.|.|||++|.|||.+|..+|+.+.+ +||. |++-|+|..+||++||+
T Consensus 196 ~sk~kg~ks~i~y~ltpt~t--~~~v~rrykhfdwl~~rl~~kf~~i~vp~Lpd---------kq~~gr~Ee~fi~~rr~ 264 (490)
T KOG2528|consen 196 ESKFKGLKSYIAYQLTPTHT--NISVSRRYKHFDWLYERLLLKFPLIPVPPLPD---------KQVTGRFEEDFIEKRRK 264 (490)
T ss_pred ccccccchheeEeeeccccc--CcchhhcccccHHHHHHHHhhcccccCCCCCc---------cccccchhHHHHHHHHH
Confidence 45789999999999987653 334999999999999999999977654 7774 88999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCccccccccccc
Q 001141 754 LIQECLQSILHSSSFSSPPNALITFLSQQ 782 (1142)
Q Consensus 754 ~LE~YLq~LL~h~~~Ls~S~vL~eFLe~s 782 (1142)
+|+.|++.+++| ++++.+++++.||.+.
T Consensus 265 ~l~~wm~~~~~h-pvlsq~evf~hFl~c~ 292 (490)
T KOG2528|consen 265 GLQWWMNHMCRH-PVLSQCEVFQHFLTCP 292 (490)
T ss_pred HHHHHHHHhhcc-hHhhhhHHHHHHHcCC
Confidence 999999999998 5689999999999985
No 66
>cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting
Probab=99.31 E-value=5e-12 Score=126.11 Aligned_cols=98 Identities=17% Similarity=0.196 Sum_probs=68.5
Q ss_pred cccEEEEEEEEeC-----CceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCc-cc-----ccccccc---cCCC-CHH
Q 001141 682 KEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWS-SV-----EKESRKI---FGNV-SPL 746 (1142)
Q Consensus 682 ksYTVY~I~Vksg-----~~eWtV~RRYSDF~~LHqrLke~fp~~~l~LP~~p~-sV-----~K~PKKl---fGn~-spe 746 (1142)
..++.|+|+.++. .....|.|||+||.|||++|.+.+...++.+|++|. ++ .|+ +|+ -+++ ..+
T Consensus 14 ~d~V~Y~V~TkTtl~~F~~~ef~V~RRysDFlwL~~~L~e~~~~~G~IIPPlPeK~~~~~~~~k~-~kl~~~~~~~~~ee 92 (141)
T cd07291 14 RDKVKFTVHTKTTLPSFQSPDFSVTRQHEDFIWLHDALIETEDYAGLIIPPAPPKPDFDGPREKM-QKLGEGEGSMTKEE 92 (141)
T ss_pred CCCEEEEEEeCCCCccccCCccEEEeccHHHHHHHHHHhccccCCeEEECCCCCCccccchHHhh-hhcccCcccccHHH
Confidence 3679999999873 467999999999999999999754444433444332 11 111 111 1223 356
Q ss_pred HHHHH--------------HHHHHHHHHHHHhcCCCCCCcccccccccc
Q 001141 747 VVAHR--------------SVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 747 FIEeR--------------Rk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
|++.| +++||.||++|+.|| .++.+..|+.||+.
T Consensus 93 f~~~r~~~~~~~~~~~kk~~a~lE~fL~Ria~HP-~l~~d~~f~~FLe~ 140 (141)
T cd07291 93 FAKMKQELEAEYLAVFKKTVQVHEVFLQRLSSHP-SLSKDRNFHIFLEY 140 (141)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCC-eeccCcchhhhccC
Confidence 77755 467999999999985 57888899999985
No 67
>cd06892 PX_SNX5_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Members of this subfamily include SNX5, SNX6, and similar proteins. They contain a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of som
Probab=99.30 E-value=4.1e-12 Score=127.21 Aligned_cols=99 Identities=13% Similarity=0.191 Sum_probs=73.3
Q ss_pred cccEEEEEEEEeC-----CceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCcc--ccccccc--cc----CCCCHHHH
Q 001141 682 KEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSS--VEKESRK--IF----GNVSPLVV 748 (1142)
Q Consensus 682 ksYTVY~I~Vksg-----~~eWtV~RRYSDF~~LHqrLke~fp~~~l~LP~~p~s--V~K~PKK--lf----Gn~speFI 748 (1142)
..++.|.|++++. ..+..|.|||+||.|||++|.+.....++.+|++|.. +...+.| .. +++..+|+
T Consensus 14 ~~~V~Y~V~TkT~l~~f~~~e~sV~RR~sDF~wL~~~L~~~~~~~g~IVPP~P~K~~~~~~~~k~~klg~~d~~~~~ef~ 93 (141)
T cd06892 14 RDKVKFTVHTKTTLPTFQKPEFSVTRQHEEFVWLHDTLVENEDYAGLIIPPAPPKPDFDASREKLQKLGEGEGSMTKEEF 93 (141)
T ss_pred CCeEEEEEEeccCCccccCCeeEEEeccHHHHHHHHHHhhccCCCeEEECCCCCCcccccccceeeecccCccccchHHH
Confidence 5789999999873 5789999999999999999997633333333433320 1000111 11 34899999
Q ss_pred HHHHHHH---------------HHHHHHHHhcCCCCCCcccccccccc
Q 001141 749 AHRSVLI---------------QECLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 749 EeRRk~L---------------E~YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
++|+..| |.||++|+.|| .++++..|+.||+.
T Consensus 94 ~~r~~~Le~~y~~~~~k~v~~~e~FL~RiA~HP-~L~~~~~l~~FLe~ 140 (141)
T cd06892 94 EKMKQELEAEYLAIFKKTVAMHEVFLRRLASHP-VLRNDANFRVFLEY 140 (141)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCC-eeecCHhHHhhhcC
Confidence 9999999 58999999985 67999999999975
No 68
>cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transfo
Probab=99.27 E-value=1.5e-11 Score=122.76 Aligned_cols=96 Identities=14% Similarity=0.178 Sum_probs=67.7
Q ss_pred ccEEEEEEEEeC-----CceEEEEeecccHHHHHHHHHhhcccCCC---CCCCCCccccccccc----c---cCCCCHHH
Q 001141 683 EYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEGW---SLPSPWSSVEKESRK----I---FGNVSPLV 747 (1142)
Q Consensus 683 sYTVY~I~Vksg-----~~eWtV~RRYSDF~~LHqrLke~fp~~~l---~LP~~p~sV~K~PKK----l---fGn~speF 747 (1142)
..+.|+|+.++. ..+..|.|||+||.|||++|.+.....++ ++|+.+. -..+|. + -|++..++
T Consensus 15 d~V~Y~V~TkTtlp~F~~~e~sV~RRysDF~wL~~~L~e~~~~~G~IVPPlP~K~~--~~~~~~k~~klg~~~~~~~~ee 92 (141)
T cd07292 15 DKVKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPD--FDASREKLQKLGEGEGSMTKEE 92 (141)
T ss_pred CceEEEEEecccCcccCCCceEEEeccHhHHHHHHHHhhcccCCcEEECCCCCCcc--ccchHHHHHhhccccccchHHH
Confidence 348999999874 56799999999999999999975333333 5554221 111111 1 12344344
Q ss_pred HH---------------HHHHHHHHHHHHHHhcCCCCCCcccccccccc
Q 001141 748 VA---------------HRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 748 IE---------------eRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
.+ +|+++||.|||+|+.|| .++....|+.||+-
T Consensus 93 ~~~~~~~l~~~~~~~~kk~~a~~E~Fl~Ria~HP-~l~~D~~f~~FLe~ 140 (141)
T cd07292 93 FTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHP-ILRKDLNFHVFLEY 140 (141)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCC-ccccCcchhheecc
Confidence 33 77899999999999985 57888999999985
No 69
>cd07297 PX_PLD2 The phosphoinositide binding Phox Homology domain of Phospholipase D2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD2 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It mediates EGF-dependent insulin secretion and EGF-induced Ras activation by the guanine nucleotide-exchange factor
Probab=99.16 E-value=1e-10 Score=115.40 Aligned_cols=95 Identities=20% Similarity=0.299 Sum_probs=67.5
Q ss_pred EEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccCCC-CCCCCC---ccc-c-------cccccccCCCCHHHHHHHH
Q 001141 685 TVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGW-SLPSPW---SSV-E-------KESRKIFGNVSPLVVAHRS 752 (1142)
Q Consensus 685 TVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~~l-~LP~~p---~sV-~-------K~PKKlfGn~speFIEeRR 752 (1142)
++|+|++++|...|+|.|||++|.+||++|...-....+ |+|..- ... + ..|+.- +.. .+-+..|+
T Consensus 24 ~lYtIeltHG~F~W~IkRryKhF~~LHr~L~~~k~~~~~~P~~~~~~~r~~~~~~~~~~mP~LP~~~-~~~-~~~~~sr~ 101 (130)
T cd07297 24 TLYTVRLTHGEFTWTVKKKFKHFQELHRDLYRHKVMLSFLPLGRFAIQHRQQLEGLTEEMPSLPGTD-REA-SRRTASKP 101 (130)
T ss_pred eeEEEEEecCceEEEEEehhhhHHHHHHHHHHHHHhhhcCCchhhhhhhccccccccCcCCCCCCCC-chh-hhhhhhHH
Confidence 799999999999999999999999999999974333222 222100 011 0 111110 111 34577899
Q ss_pred HHHHHHHHHHHhcCCCCCCccccccccccc
Q 001141 753 VLIQECLQSILHSSSFSSPPNALITFLSQQ 782 (1142)
Q Consensus 753 k~LE~YLq~LL~h~~~Ls~S~vL~eFLe~s 782 (1142)
++||+||++|+.++. .++.++..+||+.+
T Consensus 102 kqLE~YLn~LL~~~~-YRn~~atleFLeVS 130 (130)
T cd07297 102 KYLENYLNNLLENSF-YRNYHAMMEFLAVS 130 (130)
T ss_pred HHHHHHHHHHhcchh-hcCChhheeeeecC
Confidence 999999999999765 58888999999863
No 70
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=1.5e-10 Score=134.75 Aligned_cols=95 Identities=24% Similarity=0.352 Sum_probs=81.1
Q ss_pred ecccccEEEEEEEEeC-----CceEEEEeecccHHHHHHHHHhhcccCCC-CCCCCCccccccccccc-----CCCCHHH
Q 001141 679 VGVKEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSVEKESRKIF-----GNVSPLV 747 (1142)
Q Consensus 679 vGvksYTVY~I~Vksg-----~~eWtV~RRYSDF~~LHqrLke~fp~~~l-~LP~~p~sV~K~PKKlf-----Gn~speF 747 (1142)
.|++.|+.|.|.+++. .....|+|||+||.+||..|...||...+ +|| +|.++ +.++++|
T Consensus 123 ~~~~~~~~y~i~t~t~~~~~~~~~~~V~RrysDF~~L~~~L~~~~p~~~iPplP---------~k~~~~~~~~~~~s~ef 193 (503)
T KOG2273|consen 123 DGMKTYVSYIIETKTSLPIFGSSEFSVRRRYSDFLWLRSKLLSKYPGRIIPPLP---------EKSIVGSKSGDSFSDEF 193 (503)
T ss_pred CCccceEEEEEEEeeccCcCCCCceeEEeehhHHHHHHHHHHHHCCCCeeCCCC---------chhhhhccccCCCCHHH
Confidence 4788999999999873 46789999999999999999999997653 666 34443 3589999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccccccccccc
Q 001141 748 VAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQE 783 (1142)
Q Consensus 748 IEeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~s~ 783 (1142)
+++||++|+.||++++.|| .++++.+|+.||+...
T Consensus 194 ~e~rr~~L~~~l~r~~~hP-~l~~~~~~~~FL~~~~ 228 (503)
T KOG2273|consen 194 IEKRRKALERFLNRLSLHP-VLSNDEDFRLFLESDS 228 (503)
T ss_pred HHHHHHHHHHHHHHHhcCc-ccccCHHHHHHhcccc
Confidence 9999999999999999985 5788899999999984
No 71
>cd06889 PX_NoxO1 The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1, a homolog of the p47phox subunit of phagocytic NADPH oxidase, is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain
Probab=99.02 E-value=1.3e-09 Score=107.14 Aligned_cols=94 Identities=21% Similarity=0.222 Sum_probs=75.0
Q ss_pred cccEEEEEEEEe-CCceEEEEeecccHHHHHHHHHhhcccCC-------CCCCCCCcccccccccccCCC--CHHHHHHH
Q 001141 682 KEYTVYKIRVWS-GKDQWEVERRYRDFYTLYRRLKSLSADEG-------WSLPSPWSSVEKESRKIFGNV--SPLVVAHR 751 (1142)
Q Consensus 682 ksYTVY~I~Vks-g~~eWtV~RRYSDF~~LHqrLke~fp~~~-------l~LP~~p~sV~K~PKKlfGn~--speFIEeR 751 (1142)
..+.+|.|.|+. ++..|.|+|||+||..||.+|++.||.-. -.||.-| -+.++|+. ..+.-+.|
T Consensus 17 ~~h~~Y~i~V~wsdgs~~~iyR~y~eF~~lh~~L~~~FP~EaG~~~~~~riLP~lP------~~~~~~~~~~~~~~a~~R 90 (121)
T cd06889 17 RRHKTYMFSVLWSDGSELFVYRSLEEFRKLHKQLKEKFPVEAGLLRSSDRVLPKFK------DAPSLGSLKGSTSRSLAR 90 (121)
T ss_pred cceeEEEEEEEEcCCcEEEEEEEHHHHHHHHHHHHHHCCcccCCCCCCCcccCCCC------CCcccCCcccccchHHHH
Confidence 456789999976 67899999999999999999999998521 1344211 14556764 23356799
Q ss_pred HHHHHHHHHHHHhcCCCCCCcccccccccc
Q 001141 752 SVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 752 Rk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
+..|+.|++.|++.++.++.++.+..|+.+
T Consensus 91 ~~~L~~Y~~~Ll~lp~~Is~~~~V~~FF~p 120 (121)
T cd06889 91 LKLLETYCQELLRLDEKVSRSPEVIQFFAP 120 (121)
T ss_pred HHHHHHHHHHHHcCCcceecCHHHHHhcCC
Confidence 999999999999999999999999999876
No 72
>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=98.61 E-value=9.5e-08 Score=91.21 Aligned_cols=84 Identities=15% Similarity=0.232 Sum_probs=68.0
Q ss_pred EEEEEEEe-CCceEEEEeecccHHHHHHHHHhhcccCCC-CCCCCCcccccccccccCCCCHHHHHHHHHHHHHHHHHHH
Q 001141 686 VYKIRVWS-GKDQWEVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQSIL 763 (1142)
Q Consensus 686 VY~I~Vks-g~~eWtV~RRYSDF~~LHqrLke~fp~~~l-~LP~~p~sV~K~PKKlfGn~speFIEeRRk~LE~YLq~LL 763 (1142)
.|.|+|.. ++..-.|+|+|.+|.+||++|++.||...+ .||..| .++..+. =++|.+.|+.||+.|+
T Consensus 14 lY~i~V~~sd~~~t~v~Rs~eeF~eLH~~L~~~FP~~~LP~fP~~~---------~~~~~~~--~~~R~~~L~~Yl~~Ll 82 (101)
T cd06896 14 LYLVQVTQSCNLVSLTEKSFEQFSELHSQLQKQFPSLALPEFPHWW---------HLPFTDS--DHKRVRDLNHYLEQLL 82 (101)
T ss_pred EEEEEEEEeCCCcceeeecHHHHHHHHHHHHHHCccccccCCCCcc---------ccCcccH--HHHHHHHHHHHHHHHH
Confidence 49999965 567889999999999999999999997653 566422 2333333 3689999999999999
Q ss_pred hcCCCCCCccccccccc
Q 001141 764 HSSSFSSPPNALITFLS 780 (1142)
Q Consensus 764 ~h~~~Ls~S~vL~eFLe 780 (1142)
..++.+++++.+..|+.
T Consensus 83 ~~~~eVa~sd~v~sFF~ 99 (101)
T cd06896 83 SGSREVANSDCVLSFFL 99 (101)
T ss_pred ccCHHHhcchHHHHHhh
Confidence 99999999999988874
No 73
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=98.42 E-value=4.1e-07 Score=107.77 Aligned_cols=83 Identities=25% Similarity=0.222 Sum_probs=67.9
Q ss_pred ccccEEEEEEEEeC-----CceE---EEEeecccHHHHHHHHHhhcccCCC-CCCCCCccccccccccc-----CCCCHH
Q 001141 681 VKEYTVYKIRVWSG-----KDQW---EVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSVEKESRKIF-----GNVSPL 746 (1142)
Q Consensus 681 vksYTVY~I~Vksg-----~~eW---tV~RRYSDF~~LHqrLke~fp~~~l-~LP~~p~sV~K~PKKlf-----Gn~spe 746 (1142)
...|+.|.|...+. ...- +|.|||+||.+||..|...+|...+ +|| +|++. ++++++
T Consensus 148 ~~~~~~y~i~~~~n~~~f~~~~~~~~~V~RRySdf~~Lh~~L~~~~p~~~iPplP---------~K~~~s~~~~~~~~~~ 218 (524)
T COG5391 148 RDKHTSYEIITVTNLPSFQLRESRPLVVRRRYSDFESLHSILIKLLPLCAIPPLP---------SKKSNSEYYGDRFSDE 218 (524)
T ss_pred CCCcceeeEEEeecCccccccccccceeeeccccHHHHHHHhhhhCCCCCCCCCC---------chhhhccccccccchH
Confidence 45799999988763 2333 9999999999999999999977654 777 46666 479999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 001141 747 VVAHRSVLIQECLQSILHSSSFSSPPN 773 (1142)
Q Consensus 747 FIEeRRk~LE~YLq~LL~h~~~Ls~S~ 773 (1142)
||++|+.+|+.||+.++.||. ++++.
T Consensus 219 ~i~~r~~~L~~~~~~~~~hp~-lsn~~ 244 (524)
T COG5391 219 FIEERRQSLQNFLRRVSTHPL-LSNYK 244 (524)
T ss_pred HHHHHHHHHHHHHHHHhcCcc-ccccc
Confidence 999999999999999999854 56544
No 74
>KOG2101 consensus Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s) [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]
Probab=98.01 E-value=8.2e-06 Score=92.07 Aligned_cols=84 Identities=33% Similarity=0.405 Sum_probs=65.5
Q ss_pred cccccEEEEEEEEeCCce-----EEEEeecccHHHHHHHHHhhc-ccCCCCCCCCCcccccccccccCCCCHHHHHHHHH
Q 001141 680 GVKEYTVYKIRVWSGKDQ-----WEVERRYRDFYTLYRRLKSLS-ADEGWSLPSPWSSVEKESRKIFGNVSPLVVAHRSV 753 (1142)
Q Consensus 680 GvksYTVY~I~Vksg~~e-----WtV~RRYSDF~~LHqrLke~f-p~~~l~LP~~p~sV~K~PKKlfGn~speFIEeRRk 753 (1142)
..++|++|.|+|...... |+|+|||++|..||.+|++.| |...++.|..+. +...++++++++..++.+|++
T Consensus 131 ~~~~~~vy~~~v~~~~~~~~~~~~~V~rRysdf~~l~~~Lk~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~r~~ 208 (362)
T KOG2101|consen 131 KSKSFTVYKVTVSVSSRREDLSTAVVSRRYSDFSRLHRRLKRQFNPALRFPGPKFRN--EIQKKKLLGNFDADVIPERSE 208 (362)
T ss_pred cccceeEEEEEEEecCCCccCcCceeeechhHHHHHHHHHHHhcCccccCCCccchh--HHHHHHhhccchhhhhhhhhh
Confidence 457899999999876555 999999999999999999999 565555553110 112345678899999999999
Q ss_pred HHHHHH--HHHHhc
Q 001141 754 LIQECL--QSILHS 765 (1142)
Q Consensus 754 ~LE~YL--q~LL~h 765 (1142)
+++.|| +-...+
T Consensus 209 ~~~~fl~~~f~~~~ 222 (362)
T KOG2101|consen 209 ALEEFLSLQFKDSK 222 (362)
T ss_pred hHHHHHHhhhhhcc
Confidence 999999 666554
No 75
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.42 E-value=0.00032 Score=88.12 Aligned_cols=112 Identities=19% Similarity=0.245 Sum_probs=87.3
Q ss_pred CCccccceEEEeccccccCCcccccceecccccEEEEEEEEeCC--ceEEEEeecccHHHHHHHHHhhcccCCC-CCCCC
Q 001141 652 LVPLRIDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGK--DQWEVERRYRDFYTLYRRLKSLSADEGW-SLPSP 728 (1142)
Q Consensus 652 ~~~~~Id~VEVv~~kqk~G~vS~servvGvksYTVY~I~Vksg~--~eWtV~RRYSDF~~LHqrLke~fp~~~l-~LP~~ 728 (1142)
....+|.+|.|.+-.++ .-.+++..|+|+|...+ ..-.|+|-|.+|.+||++|+..||...+ .+|.
T Consensus 1370 ~sdgRi~~v~v~~f~K~----------~~pnK~YmYvveV~r~n~~e~s~i~RsF~EF~ElH~KL~~~Fp~~~Lp~fP~- 1438 (1639)
T KOG0905|consen 1370 NSDGRISEVTVLKFEKH----------YSPNKIYMYVVEVTRENQAEPSFIFRSFEEFQELHNKLRARFPSMKLPSFPH- 1438 (1639)
T ss_pred ccCCceEEEEEEEeeee----------ccCCceEEEEEEEEecCCCCchHHHHhHHHHHHHHHHHHHhCccccCCCCCc-
Confidence 34557888888874333 23567788999998744 4678999999999999999999988654 4452
Q ss_pred CcccccccccccCCCC-HHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccc
Q 001141 729 WSSVEKESRKIFGNVS-PLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQ 782 (1142)
Q Consensus 729 p~sV~K~PKKlfGn~s-peFIEeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~s 782 (1142)
+-.+|+.+ .++-++|+..|+.||..|++-...+.+++.+..|+.+-
T Consensus 1439 --------~~~~grsnikaVA~kR~~~ln~yl~~L~nas~EVa~cDlVyTFFhpl 1485 (1639)
T KOG0905|consen 1439 --------RIHLGRSNIKAVAEKRIIELNKYLISLFNASDEVAHCDLVYTFFHPL 1485 (1639)
T ss_pred --------eeeecccchhHHHHHHHHHHHHHHHHHhcCCchhhccceeeeeechh
Confidence 23456644 55678999999999999999989999999999998764
No 76
>KOG3784 consensus Sorting nexin protein SNX27 [General function prediction only; Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.00031 Score=80.61 Aligned_cols=91 Identities=21% Similarity=0.356 Sum_probs=72.1
Q ss_pred cccccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCCHHHHHHHHHHHHHH
Q 001141 680 GVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQEC 758 (1142)
Q Consensus 680 GvksYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~~-l~LP~~p~sV~K~PKKlfGn~speFIEeRRk~LE~Y 758 (1142)
|...||+|.|.+.. .....+||+++..||..|+++|.... +.+| ||+.| .+.+.-+++||.+||+|
T Consensus 13 ~~~~ytaynih~nG---~~~~~~r~s~~~~l~~~lr~~~~~~~~p~~p---------~k~~f-~L~~~~~~~rr~~leqy 79 (407)
T KOG3784|consen 13 SLERYTAYNIHING---RQHGSVRYSQLVELHEQLKKHFYDYCLPQFP---------PKKLF-KLTPQQLDSRRRGLEQY 79 (407)
T ss_pred Ccccccceeeeecc---eeEEEEehHHHHhHHHHHHHHhhcccCCCCC---------ccccc-CCChhhhHHHHHHHHHH
Confidence 66789999998832 33556899999999999999886522 2444 46654 46899999999999999
Q ss_pred HHHHHhcCCCCCCccccccccccccc
Q 001141 759 LQSILHSSSFSSPPNALITFLSQQES 784 (1142)
Q Consensus 759 Lq~LL~h~~~Ls~S~vL~eFLe~s~s 784 (1142)
|+.++++ +.+..+..+..||--...
T Consensus 80 lqa~~q~-~~l~~s~~~~~fL~~~q~ 104 (407)
T KOG3784|consen 80 LQAVCQD-PVLARSELVQKFLMRAQP 104 (407)
T ss_pred HHHHhcC-ccccchhhhhHHHHhccc
Confidence 9999996 567999999999866543
No 77
>cd07298 PX_RICS The phosphoinositide binding Phox Homology domain of PX-RICS. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. RICS is a Rho GTPase-activating protein for cdc42 and Rac1. It is implicated in the regulation of postsynaptic signaling and neurite outgrowth. An N-terminal splicing variant of RICS containing additional PX and Src Homology 3 (SH3) domains, also called PX-RICS, is the main isoform expressed during neural development. PX-RICS is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and
Probab=96.88 E-value=0.0036 Score=61.61 Aligned_cols=85 Identities=21% Similarity=0.260 Sum_probs=57.6
Q ss_pred ccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccCC----CCCCCCCcccccccccccCCCCHHHHHHHHHHHHHH
Q 001141 683 EYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEG----WSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQEC 758 (1142)
Q Consensus 683 sYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~~----l~LP~~p~sV~K~PKKlfGn~speFIEeRRk~LE~Y 758 (1142)
.=++|.|+|...+..|.|.|+|-||..|.+.|.+-.=++. ..||+ .-...-.++.+ ...|..|
T Consensus 26 ~e~~~~v~v~Cqgrsw~VkRSyEdfr~LD~~LHrCvyDRrfS~L~eLp~----------~~~l~~~~~~v---~~~l~~Y 92 (115)
T cd07298 26 KELVYLVQIACQGRSWIVKRSYEDFRVLDKHLHLCIYDRRFSQLPELPR----------SDSLKDSPESV---TQMLMAY 92 (115)
T ss_pred CCeEEEEEEEeCCCceEEEeeHHHHHHHHHHHHHHHHhhhhhccccCCC----------cccccccHHHH---HHHHHHH
Confidence 4589999999999999999999999999999987421111 25663 21223345555 5789999
Q ss_pred HHHHHhcCCCCCCccccccccc
Q 001141 759 LQSILHSSSFSSPPNALITFLS 780 (1142)
Q Consensus 759 Lq~LL~h~~~Ls~S~vL~eFLe 780 (1142)
|.++-......-++-.+..||+
T Consensus 93 L~RlS~Ia~~~~nCGPvLtWle 114 (115)
T cd07298 93 LSRLSAIAGNKINCGPALTWME 114 (115)
T ss_pred HHHHHHHhhCCccchhcceeee
Confidence 9988764333333444445554
No 78
>cd07278 PX_RICS_like The phosphoinositide binding Phox Homology domain of PX-RICS-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this family include PX-RICS, TCGAP (Tc10/Cdc42 GTPase-activating protein), and similar proteins. They contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. They act as Rho GTPase-activating proteins. PX-RICS is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and PI5P. TCGAP is widely expressed in the brain where it is involved in regulating the outgrowth of axons and d
Probab=96.20 E-value=0.018 Score=56.71 Aligned_cols=86 Identities=19% Similarity=0.300 Sum_probs=57.2
Q ss_pred cccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccCCC----CCCCCCcccccccccccCCCCHHHHHHHHHHHHH
Q 001141 682 KEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGW----SLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQE 757 (1142)
Q Consensus 682 ksYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~~l----~LP~~p~sV~K~PKKlfGn~speFIEeRRk~LE~ 757 (1142)
..-++|.|+|..++..|.|.|.|-+|..|.+.|.+-.=++.+ .||+ --. ...-.+.=...|..
T Consensus 24 ~k~~~~~v~V~cqg~sW~VkRSyEdfr~LD~~LHrCiyDRr~S~L~eL~~----------~~~---~~~~~~~~~~~l~~ 90 (114)
T cd07278 24 GKELVYLVQVQCQGKSWLVKRSYDDFRMLDKHLHQCIYDRKFSQLTELPE----------ECI---EKREQQNLHQVLSD 90 (114)
T ss_pred CCceEEEEEEEeCCcceEEEeeHHHHHHHHHHHHHHHHhhhhhccccCCc----------ccc---ccchHHHHHHHHHH
Confidence 357999999999999999999999999999998863322222 5552 101 11122344578999
Q ss_pred HHHHHHhcCCCCCCccccccccc
Q 001141 758 CLQSILHSSSFSSPPNALITFLS 780 (1142)
Q Consensus 758 YLq~LL~h~~~Ls~S~vL~eFLe 780 (1142)
||.++...-...-++-.+..||+
T Consensus 91 YL~RlS~Ia~~~inCGPvLtWle 113 (114)
T cd07278 91 YLKRLSSIAGNLLNCGPVLNWLE 113 (114)
T ss_pred HHHHHHHHhcCcccchhcceeee
Confidence 99988765433334444556665
No 79
>cd07299 PX_TCGAP The phosphoinositide binding Phox Homology domain of Tc10/Cdc42 GTPase-activating protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. TCGAP (Tc10/Cdc42 GTPase-activating protein) contains N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal proline-rich regions. It is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It interacts with cdc42 and TC10beta through its GAP domain and with phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P2] through its PX domain. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. TCGAP has also been named sorting nexins 26 (SNX26). SNXs
Probab=96.20 E-value=0.018 Score=56.53 Aligned_cols=86 Identities=22% Similarity=0.289 Sum_probs=56.4
Q ss_pred cccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccCC----CCCCCCCcccccccccccCCCCHHHHHHHHHHHHH
Q 001141 682 KEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEG----WSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQE 757 (1142)
Q Consensus 682 ksYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~~----l~LP~~p~sV~K~PKKlfGn~speFIEeRRk~LE~ 757 (1142)
..-++|.|+|...+..|.|.|.|-||..|.+.|.+-.=++. ..||+ ---.+. .. +.=...|..
T Consensus 23 ~k~~~flv~V~cqgrsW~v~RSyEdfr~LD~~LHrCiyDRr~S~L~eL~~---------~~~l~~-~~---~~~~~~l~~ 89 (113)
T cd07299 23 EKDLVFLVQVTCQGRSWMVLRSYEDFRTLDAHLHRCIFDRRFSQLLELPP---------LCEIGD-RL---QILTPLLSE 89 (113)
T ss_pred CCceEEEEEEEecCcceEEeeeHHHHHHHHHHHHHHHHhhhhhhhhccCc---------cccccc-hH---HHHHHHHHH
Confidence 46799999999988899999999999999998886322222 25663 101111 11 234568999
Q ss_pred HHHHHHhcCCCCCCccccccccc
Q 001141 758 CLQSILHSSSFSSPPNALITFLS 780 (1142)
Q Consensus 758 YLq~LL~h~~~Ls~S~vL~eFLe 780 (1142)
||.++...-...-++-.+..||+
T Consensus 90 YL~RlS~Ia~~~inCGPVLtWme 112 (113)
T cd07299 90 YLNRLTGIVDSNLNCGPVLTWME 112 (113)
T ss_pred HHHHHHHHhcCCccccccceeee
Confidence 99998775433334444445554
No 80
>KOG4773 consensus NADPH oxidase [Energy production and conversion]
Probab=95.53 E-value=0.024 Score=64.83 Aligned_cols=92 Identities=21% Similarity=0.190 Sum_probs=68.6
Q ss_pred cccccEEEEEEEEe-CCceEEEEeecccHHHHHHHHHhhcccCC--C--------CCCCCCcccccccccccCCCCHHHH
Q 001141 680 GVKEYTVYKIRVWS-GKDQWEVERRYRDFYTLYRRLKSLSADEG--W--------SLPSPWSSVEKESRKIFGNVSPLVV 748 (1142)
Q Consensus 680 GvksYTVY~I~Vks-g~~eWtV~RRYSDF~~LHqrLke~fp~~~--l--------~LP~~p~sV~K~PKKlfGn~speFI 748 (1142)
+..++.+|+|.|+. +..+..|+|||.+|.+++.+|++.|+... + +||+ +++|+ |..+.-
T Consensus 34 ~f~~hFvyVievkw~~~se~vVyrry~E~~~~tkklee~f~~ss~k~t~l~~n~p~LpA---------~v~fd-fkqe~A 103 (386)
T KOG4773|consen 34 SFTSHFVYVIEVKWYGGSEGVVYRRYFEFHALTKKLEERFGPSSGKSTALACNLPTLPA---------IVYFD-FKQEIA 103 (386)
T ss_pred ccchheEEEEEehhhccccceeeeehhhhhhhcchHhhcCCCcccccCchhccCCCCcc---------eeEec-hhhhhh
Confidence 33458899999976 45789999999999999999999996532 1 4552 45544 456778
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcccccccccc
Q 001141 749 AHRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 749 EeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
|+|...|..|...++.-|.-....+.|.-|...
T Consensus 104 e~r~~~ln~y~e~LlslPi~~l~~p~l~~fffv 136 (386)
T KOG4773|consen 104 EERIPALNAYCEWLLSLPIGRLGGPGLRPFFFV 136 (386)
T ss_pred hhhhHHHHHHHHHHHhcchhhcCCCCceeeeee
Confidence 899999999999999966544455556666543
No 81
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=95.33 E-value=0.011 Score=51.82 Aligned_cols=41 Identities=24% Similarity=0.669 Sum_probs=30.4
Q ss_pred CccccccccCCCCCCCeeeccCCCceeecccccceechhhhcCCCCCCc
Q 001141 1019 VGVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKLTSCSC 1067 (1142)
Q Consensus 1019 KGFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k~~~CPk 1067 (1142)
.|-+|. +|.. .|.| + +.++.|+.|++.|||.||.+...|-.
T Consensus 4 ~~~~C~---~Cg~---~~~~-~-dDiVvCp~CgapyHR~C~~~~g~C~~ 44 (54)
T PF14446_consen 4 EGCKCP---VCGK---KFKD-G-DDIVVCPECGAPYHRDCWEKAGGCIN 44 (54)
T ss_pred cCccCh---hhCC---cccC-C-CCEEECCCCCCcccHHHHhhCCceEe
Confidence 466787 7885 2333 2 35779999999999999987666754
No 82
>KOG1660 consensus Sorting nexin SNX6/TFAF2, contains PX domain [Defense mechanisms]
Probab=77.75 E-value=3.7 Score=47.82 Aligned_cols=101 Identities=16% Similarity=0.165 Sum_probs=61.1
Q ss_pred EEEEEEe----CCceEEEEeecccHHHHHHHHHhhcccCCCCCCCCC-c-----ccccccccc-c--CCCC-HH------
Q 001141 687 YKIRVWS----GKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPW-S-----SVEKESRKI-F--GNVS-PL------ 746 (1142)
Q Consensus 687 Y~I~Vks----g~~eWtV~RRYSDF~~LHqrLke~fp~~~l~LP~~p-~-----sV~K~PKKl-f--Gn~s-pe------ 746 (1142)
|.+++++ ...+..|.|--.+|.|||..+...-...++-+|++| . +.++.- ++ - |.+. .+
T Consensus 42 ~tv~t~t~lp~~~~e~~v~r~Heef~wlh~~i~~~e~yaG~iiPp~p~~p~fda~reklQ-kLGeGe~~mTkEEf~KmK~ 120 (399)
T KOG1660|consen 42 FTVHTRTTLPLFMPEFSVVRQHEEFVWLHDTIEENEDYAGVIIPPAPPRPDFDASREKLQ-KLGEGEGWMTKEEFLKMKQ 120 (399)
T ss_pred eeEEEeeeccCCCCccceeeeecceeeeeehhhhccCcCceecCCCCCCCCCCCChHHHH-HhcCCcccccHHHHHHHHH
Confidence 4444444 236788999999999999998874433444344333 1 212210 11 1 2233 22
Q ss_pred -----HHHHHH---HHHHHHHHHHHhcCCCCCCccccccccccccccCCCC
Q 001141 747 -----VVAHRS---VLIQECLQSILHSSSFSSPPNALITFLSQQESLRNSP 789 (1142)
Q Consensus 747 -----FIEeRR---k~LE~YLq~LL~h~~~Ls~S~vL~eFLe~s~sf~~SP 789 (1142)
+++.-+ ..=+.||++|+.|| .++....+..||+.....++++
T Consensus 121 elEaeyLA~fKKTvamhEvfl~RlaahP-vlr~d~nf~vflEy~qdLsvr~ 170 (399)
T KOG1660|consen 121 ELEAEYLARFKKTVAMHEVFLRRLAAHP-VLRLDQNFSVFLEYDQDLSVRG 170 (399)
T ss_pred HhhhHHHHHHHHhhccHHHHHHHHhcCC-eeecccchhhhhhhcccccccc
Confidence 332221 23467999999985 5788899999999986655555
No 83
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=75.84 E-value=3.6 Score=34.63 Aligned_cols=41 Identities=32% Similarity=0.689 Sum_probs=28.8
Q ss_pred CccccccccCCCCCCCeeeccCCCceeecccccceechhhhcCC-CCCC
Q 001141 1019 VGVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKL-TSCS 1066 (1142)
Q Consensus 1019 KGFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k~-~~CP 1066 (1142)
+.-.|. .|+. .|+.+- ....+|..|+-+.|+.|..+. ..|+
T Consensus 10 ~~~~C~---~C~~---~i~g~~-~~g~~C~~C~~~~H~~C~~~~~~~C~ 51 (53)
T PF00130_consen 10 KPTYCD---VCGK---FIWGLG-KQGYRCSWCGLVCHKKCLSKVPPSCG 51 (53)
T ss_dssp STEB-T---TSSS---BECSSS-SCEEEETTTT-EEETTGGCTSSSBSS
T ss_pred CCCCCc---ccCc---ccCCCC-CCeEEECCCCChHhhhhhhhcCCCCC
Confidence 455687 7884 676644 467899999999999999764 4554
No 84
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.05 E-value=1.3 Score=55.99 Aligned_cols=37 Identities=14% Similarity=0.341 Sum_probs=26.1
Q ss_pred cccceechhhhc-CCCCCCchhhhhHHHhhhhhhhhccc
Q 001141 1049 SCEAVFHKPCFK-KLTSCSCGTSLVVETAVNSVIRASHS 1086 (1142)
Q Consensus 1049 ~C~SVFHk~Cf~-k~~~CPkCaRlr~~k~~~~~~~~~~~ 1086 (1142)
.|+-.||++|+. +...||+|+- -.|..+++-+++.|.
T Consensus 858 ~CgHsyHqhC~e~~~~~CP~C~~-e~~~~m~l~~s~~q~ 895 (933)
T KOG2114|consen 858 LCGHSYHQHCLEDKEDKCPKCLP-ELRGVMDLKRSQEQK 895 (933)
T ss_pred ecccHHHHHhhccCcccCCccch-hhhhhHHHHHHHHHh
Confidence 588999999997 3478999987 344455555555544
No 85
>PLN02866 phospholipase D
Probab=71.89 E-value=6.3 Score=51.54 Aligned_cols=98 Identities=18% Similarity=0.239 Sum_probs=62.4
Q ss_pred cEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhc----------------ccCCC----------------CCCCCCc-
Q 001141 684 YTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLS----------------ADEGW----------------SLPSPWS- 730 (1142)
Q Consensus 684 YTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~f----------------p~~~l----------------~LP~~p~- 730 (1142)
-..|+|+++.....|+++++-++-.-||-.|+++- -..++ .+|....
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (1068)
T PLN02866 32 LLSYTIELQYKQFKWTLYKKASQVLYLHFALKKRAFIEELHEKQEQVKEWLQNLGIGDHPAVVQDDDEPDDGTVPLHHDE 111 (1068)
T ss_pred EEEEEEEEEEeeeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccccccccccccccchh
Confidence 46799999999999999999888766666655421 00111 2332110
Q ss_pred -----ccc---ccc--ccccCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccccc
Q 001141 731 -----SVE---KES--RKIFGNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQE 783 (1142)
Q Consensus 731 -----sV~---K~P--KKlfGn~speFIEeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~s~ 783 (1142)
.|+ +.| +-.+|+ .+.+-..++.+||.||+.++.+. .+.+++.+.+||+.+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~yL~~~l~~~-~~~n~~~~~~FlevS~ 172 (1068)
T PLN02866 112 SAKNRDVPSSAALPVIRPALGR-QQSISDRAKVAMQEYLNHFLGNL-DIVNSREVCKFLEVSK 172 (1068)
T ss_pred hcccCCCcchhhcceeccccCC-CccccHHHHHHHHHHHHHHhccc-hhcCCHhhhhheeece
Confidence 111 111 011233 34455666777999999999974 5688889999999975
No 86
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=58.41 E-value=5.3 Score=32.25 Aligned_cols=36 Identities=33% Similarity=0.743 Sum_probs=26.3
Q ss_pred CccccccccCCCCCCCeeeccCCCceeecccccceechhhhcCC
Q 001141 1019 VGVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKL 1062 (1142)
Q Consensus 1019 KGFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k~ 1062 (1142)
+...|. .|.. .+.+.+ ...+|..|+.+.|+.|.++.
T Consensus 10 ~~~~C~---~C~~--~i~~~~---~~~~C~~C~~~~H~~C~~~v 45 (49)
T smart00109 10 KPTKCC---VCRK--SIWGSF---QGLRCSWCKVKCHKKCAEKV 45 (49)
T ss_pred CCCCcc---cccc--ccCcCC---CCcCCCCCCchHHHHHHhhc
Confidence 455687 7885 233333 35799999999999999764
No 88
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=57.19 E-value=7.5 Score=31.78 Aligned_cols=37 Identities=27% Similarity=0.511 Sum_probs=26.8
Q ss_pred CccccccccCCCCCCCeeeccCCCceeecccccceechhhhcCC
Q 001141 1019 VGVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKL 1062 (1142)
Q Consensus 1019 KGFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k~ 1062 (1142)
+...|. .|.. .|.-. .....+|..|+.+.|+.|.++.
T Consensus 10 ~~~~C~---~C~~---~i~~~-~~~~~~C~~C~~~~H~~C~~~v 46 (50)
T cd00029 10 KPTFCD---VCRK---SIWGL-FKQGLRCSWCKVKCHKKCADKV 46 (50)
T ss_pred CCCChh---hcch---hhhcc-ccceeEcCCCCCchhhhhhccC
Confidence 455687 6874 23322 3467899999999999999764
No 89
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=50.42 E-value=7.4 Score=37.99 Aligned_cols=77 Identities=27% Similarity=0.386 Sum_probs=44.6
Q ss_pred cccCCccccHhHHhhccCCCCcchhHHHHHHHHHHhhhhcccccccccCccccccccCCCCCCCeeeccCCCceeecccc
Q 001141 971 LLESNDFFALRDLIDLSKGPFAALPAMVETVSKKILVHITEQCLICCDVGVPCCARQACDDPSSLIFTFQEGEVERCKSC 1050 (1142)
Q Consensus 971 LLEd~dlYSL~DLidV~sG~L~~Lp~lLe~l~~~~~~HI~~~CeLCq~KGFICE~~qiC~d~~dIIFPFq~~~t~rC~~C 1050 (1142)
|++++.--+++.+..+.+|.=.. .++. -+.||.. .=..+|..=. + .-.+|.+|
T Consensus 12 L~e~~eplt~~ei~~~~~~~~~~------~v~~-~L~hiak---~lkr~g~~Ll-----------v------~Pa~CkkC 64 (97)
T COG3357 12 LLESDEPLTVAEIFELLNGEKEK------EVYD-HLEHIAK---SLKRKGKRLL-----------V------RPARCKKC 64 (97)
T ss_pred HHcCCCcchHHHHHHHHcCCchH------HHHH-HHHHHHH---HHHhCCceEE-----------e------cChhhccc
Confidence 34445566788888888876211 1111 1345531 1133554332 1 12389999
Q ss_pred cceechhhhcCCCCCCchhhhhHH
Q 001141 1051 EAVFHKPCFKKLTSCSCGTSLVVE 1074 (1142)
Q Consensus 1051 ~SVFHk~Cf~k~~~CPkCaRlr~~ 1074 (1142)
|-+|-..=.++.+.||+|+--.++
T Consensus 65 Gfef~~~~ik~pSRCP~CKSE~Ie 88 (97)
T COG3357 65 GFEFRDDKIKKPSRCPKCKSEWIE 88 (97)
T ss_pred CccccccccCCcccCCcchhhccc
Confidence 999988655556789999865553
No 90
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=49.01 E-value=13 Score=47.90 Aligned_cols=98 Identities=16% Similarity=0.226 Sum_probs=62.9
Q ss_pred cccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccCCCCCCCCC-cccc-cccccccCC-CCHHHHHHHHHHHHHH
Q 001141 682 KEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPW-SSVE-KESRKIFGN-VSPLVVAHRSVLIQEC 758 (1142)
Q Consensus 682 ksYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~~l~LP~~p-~sV~-K~PKKlfGn-~speFIEeRRk~LE~Y 758 (1142)
..-+.|++.+.++...|+|++-++.|..||..|...- ....+|.-- ..+. ..-++.-+. .+....-+|++.||.|
T Consensus 64 ~~~~~y~v~L~hG~l~~~i~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~e~Y 141 (887)
T KOG1329|consen 64 PSSGSYTVELLHGTLDWTIKKATKLHNMLHFHLHARL--LGESFPDLGRLNINDNHDEKPSGPRSSLNSSMEKRKTLENY 141 (887)
T ss_pred cCCcceeeeeecCcEEEEEEecchhhhHHhHHHhhhh--hcccccccccccccccccccCCCccCCcccchhhhhhccch
Confidence 3557899999999999999999999999999986521 111233100 0000 000111121 1222225677779999
Q ss_pred HHHHHhcCCCCCCccccccccccc
Q 001141 759 LQSILHSSSFSSPPNALITFLSQQ 782 (1142)
Q Consensus 759 Lq~LL~h~~~Ls~S~vL~eFLe~s 782 (1142)
|+.++.. ..+.+...+.+||+.+
T Consensus 142 lt~~l~~-~~~~~t~~~~~f~e~s 164 (887)
T KOG1329|consen 142 LTVVLHK-ARYRRTHVIYEFLENS 164 (887)
T ss_pred heeeech-hhhhchhhhhcccccc
Confidence 9999995 5567778888998776
No 91
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=46.29 E-value=10 Score=30.97 Aligned_cols=27 Identities=33% Similarity=0.719 Sum_probs=19.1
Q ss_pred CceeecccccceechhhhcC----CCCCCchh
Q 001141 1042 GEVERCKSCEAVFHKPCFKK----LTSCSCGT 1069 (1142)
Q Consensus 1042 ~~t~rC~~C~SVFHk~Cf~k----~~~CPkCa 1069 (1142)
+.+...+ |+-+||..|+.+ ...||-|.
T Consensus 14 ~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 14 EKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp SCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 3455666 999999999842 45888773
No 92
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=45.44 E-value=20 Score=29.92 Aligned_cols=28 Identities=25% Similarity=0.813 Sum_probs=22.1
Q ss_pred CCCCCCCeeeccCCCceeecccccceechhhhcC
Q 001141 1028 ACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKK 1061 (1142)
Q Consensus 1028 iC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k 1061 (1142)
+|.. +.+......|..|...||..|...
T Consensus 4 vC~~------~~~~~~~i~C~~C~~~~H~~C~~~ 31 (51)
T PF00628_consen 4 VCGQ------SDDDGDMIQCDSCNRWYHQECVGP 31 (51)
T ss_dssp TTTS------SCTTSSEEEBSTTSCEEETTTSTS
T ss_pred CCCC------cCCCCCeEEcCCCChhhCcccCCC
Confidence 6764 344567889999999999999853
No 93
>COG2174 RPL34A Ribosomal protein L34E [Translation, ribosomal structure and biogenesis]
Probab=43.29 E-value=12 Score=36.47 Aligned_cols=46 Identities=24% Similarity=0.356 Sum_probs=34.1
Q ss_pred cccccccccccccCCchhhh-hhHhhcCCCCcccccccCceecCCCCC
Q 001141 836 QHYTCAGCHKHFDDGITLMQ-DFVQTLGWGKPRLCEYTGQLFCSTCHT 882 (1142)
Q Consensus 836 Q~yrCAgC~~~Ii~GltsLR-dfLktLsv~k~RlC~YtGkYYCs~CH~ 882 (1142)
...+||.|+.+|. |+.-.| -.+.+++..+-+.-.-.|-|+|..|-.
T Consensus 33 ~~p~C~~cg~pL~-Gi~r~RP~e~~r~skt~krp~RpYGG~lc~~c~~ 79 (93)
T COG2174 33 TIPKCAICGRPLG-GIPRGRPREFRRLSKTKKRPERPYGGYLCANCVR 79 (93)
T ss_pred CCCcccccCCccC-CccCCCcHHHHhccccccCcCCCcCceecHHHHH
Confidence 3468999999986 555443 345667777777788889999999965
No 94
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=37.22 E-value=28 Score=44.57 Aligned_cols=69 Identities=19% Similarity=0.296 Sum_probs=43.5
Q ss_pred cccccccccccCCchhhhhhHhhcCCCCcccccccCceecCCCCCCCccccccce---eecccCcccccchhHHHHHHHh
Q 001141 838 YTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARV---LHHWDFTRYPVSQLAKSFLDSV 914 (1142)
Q Consensus 838 yrCAgC~~~Ii~GltsLRdfLktLsv~k~RlC~YtGkYYCs~CH~ndtsVIPARV---LhnWDFS~ypVS~iAk~fL~~i 914 (1142)
..|..|++.+..- .+.+. .+.+-|.-+|..||..|-.+...+.-+++ -..+.+.+|.||+..++-++.+
T Consensus 461 dtC~~C~kkFfSl-------sK~L~-~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CYdq~EnL 532 (1374)
T PTZ00303 461 DSCPSCGRAFISL-------SRPLG-TRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYKEYETV 532 (1374)
T ss_pred CcccCcCCccccc-------ccccc-cccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHHHHHHhH
Confidence 5699999876321 11122 23477999999999999977433211111 2256677889999998544433
No 95
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=36.91 E-value=12 Score=37.37 Aligned_cols=29 Identities=21% Similarity=0.419 Sum_probs=21.5
Q ss_pred eecccccceechhhhcCCCCCCchhhhhH
Q 001141 1045 ERCKSCEAVFHKPCFKKLTSCSCGTSLVV 1073 (1142)
Q Consensus 1045 ~rC~~C~SVFHk~Cf~k~~~CPkCaRlr~ 1073 (1142)
++|.+|+.+|-..=-.-.+-||+|-+-.-
T Consensus 3 H~CtrCG~vf~~g~~~il~GCp~CG~nkF 31 (112)
T COG3364 3 HQCTRCGEVFDDGSEEILSGCPKCGCNKF 31 (112)
T ss_pred ceecccccccccccHHHHccCccccchhe
Confidence 68999999998863333367999987543
No 96
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=36.72 E-value=35 Score=35.51 Aligned_cols=75 Identities=19% Similarity=0.474 Sum_probs=47.7
Q ss_pred CCccccCCccccHhHHhhcc-CCCCcchhHHHHHHHHHHhhhhcccccccccCcc-ccccccCCCCCCCeeeccC---CC
Q 001141 968 RRYLLESNDFFALRDLIDLS-KGPFAALPAMVETVSKKILVHITEQCLICCDVGV-PCCARQACDDPSSLIFTFQ---EG 1042 (1142)
Q Consensus 968 R~HLLEd~dlYSL~DLidV~-sG~L~~Lp~lLe~l~~~~~~HI~~~CeLCq~KGF-ICE~~qiC~d~~dIIFPFq---~~ 1042 (1142)
++=++...++=-..||.+++ +|+|.++ |+.+ ....+- ..|..|-+.+| +|. .|+-+. -+|--+ ..
T Consensus 62 PqVFI~G~~IGG~del~~L~e~G~L~~l---L~~~--~~~~~~-~~C~~Cgg~rfv~C~---~C~Gs~-k~~~~~~~~~~ 131 (147)
T cd03031 62 PRVFVDGRYLGGAEEVLRLNESGELRKL---LKGI--RARAGG-GVCEGCGGARFVPCS---ECNGSC-KVFAENATAAG 131 (147)
T ss_pred CEEEECCEEEecHHHHHHHHHcCCHHHH---Hhhc--ccccCC-CCCCCCCCcCeEECC---CCCCcc-eEEeccCcccc
Confidence 44556666666777777765 5877543 4433 112232 36999999998 577 799764 455433 24
Q ss_pred ceeecccccc
Q 001141 1043 EVERCKSCEA 1052 (1142)
Q Consensus 1043 ~t~rC~~C~S 1052 (1142)
...||+.|+-
T Consensus 132 ~~~rC~~Cne 141 (147)
T cd03031 132 GFLRCPECNE 141 (147)
T ss_pred cEEECCCCCc
Confidence 5778999874
No 97
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=33.74 E-value=38 Score=30.00 Aligned_cols=61 Identities=25% Similarity=0.465 Sum_probs=29.5
Q ss_pred ccccccccccccccCCchhhhhhHhhcCCCCcccccccCceecCCCCCCCccccccceeecccCcccccchhHHHHH
Q 001141 835 SQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTRYPVSQLAKSFL 911 (1142)
Q Consensus 835 sQ~yrCAgC~~~Ii~GltsLRdfLktLsv~k~RlC~YtGkYYCs~CH~ndtsVIPARVLhnWDFS~ypVS~iAk~fL 911 (1142)
.+...|..|++++. + +...+.|...|..+|..|-..... +| ........+.+||+.-..-|
T Consensus 7 ~~~~~C~~C~~~F~--~-----------~~rrhhCr~CG~~vC~~Cs~~~~~-~~--~~~~~~~~~~RvC~~C~~~~ 67 (69)
T PF01363_consen 7 SEASNCMICGKKFS--L-----------FRRRHHCRNCGRVVCSSCSSQRIP-LP--TPSSGSGEPVRVCDSCYSKL 67 (69)
T ss_dssp GG-SB-TTT--B-B--S-----------SS-EEE-TTT--EEECCCS-EEEE-ET----GGTESEEEEE-HHHHHHH
T ss_pred CCCCcCcCcCCcCC--C-----------ceeeEccCCCCCEECCchhCCEEc-cc--ccccCCCCcCEECHHHHHHh
Confidence 44567999998873 1 245589999999999999865332 22 11223334456776665544
No 98
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=33.14 E-value=23 Score=29.62 Aligned_cols=8 Identities=38% Similarity=0.845 Sum_probs=4.0
Q ss_pred eecccccc
Q 001141 1045 ERCKSCEA 1052 (1142)
Q Consensus 1045 ~rC~~C~S 1052 (1142)
.+|+.|++
T Consensus 22 ~~Cp~CG~ 29 (46)
T PRK00398 22 VRCPYCGY 29 (46)
T ss_pred eECCCCCC
Confidence 45555554
No 99
>PF05591 DUF770: Protein of unknown function (DUF770); InterPro: IPR008312 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, these proteins are encoded in type VI secretion loci (including the SCI genomic island in Salmonella enterica and the imp locus in Rhizobium leguminosarum) implicated in pathogenicity and protein secretion [, , [].
Probab=32.46 E-value=34 Score=36.20 Aligned_cols=44 Identities=18% Similarity=0.404 Sum_probs=31.7
Q ss_pred cccCc-ccccccHHHHHHHHHHHHHHhhccccC--CcchHHHHhhcC
Q 001141 923 SAVNP-LLYSKVPALQHVMGVRKKIGSMLPYVR--CPFRRSINKGLG 966 (1142)
Q Consensus 923 ~~lNP-~LYs~V~eL~~Ir~LRkqL~~Mk~YLr--C~~a~sL~k~L~ 966 (1142)
.++.| .++..|++|++++.+|++|..++.++. -.++..|++.|.
T Consensus 97 ~DF~Pd~v~~qVp~L~~LlelR~~L~~L~~~l~~~~~~r~~l~~~l~ 143 (157)
T PF05591_consen 97 DDFHPDAVAEQVPELRKLLELREQLRDLKGPLDNNPAFRKLLQEILS 143 (157)
T ss_pred ccCCHHHHHHhhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHC
Confidence 34445 578899999999999999999999983 223444444443
No 100
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.73 E-value=31 Score=40.65 Aligned_cols=41 Identities=24% Similarity=0.585 Sum_probs=29.8
Q ss_pred cccccccCCCCCCCeeeccCCCceeecccccceechhhhcC-----CCCCCchhh
Q 001141 1021 VPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKK-----LTSCSCGTS 1070 (1142)
Q Consensus 1021 FICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k-----~~~CPkCaR 1070 (1142)
+.|. ||-+. |..+.-.|=-=|+-.||..|... .+.||=|+|
T Consensus 230 ~~Ca---IClEd------Y~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~ 275 (348)
T KOG4628|consen 230 DTCA---ICLED------YEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKR 275 (348)
T ss_pred ceEE---Eeecc------cccCCeeeEecCCCchhhccchhhHhhcCccCCCCCC
Confidence 5787 78752 44444445577999999999742 367999998
No 101
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=28.68 E-value=20 Score=46.58 Aligned_cols=26 Identities=31% Similarity=0.813 Sum_probs=21.5
Q ss_pred eeecccccceechhhhcC------CCCCCchh
Q 001141 1044 VERCKSCEAVFHKPCFKK------LTSCSCGT 1069 (1142)
Q Consensus 1044 t~rC~~C~SVFHk~Cf~k------~~~CPkCa 1069 (1142)
..||+-|+--||..|..| ...||=|.
T Consensus 1488 skrC~TCknKFH~~CLyKWf~Ss~~s~CPlCR 1519 (1525)
T COG5219 1488 SKRCATCKNKFHTRCLYKWFASSARSNCPLCR 1519 (1525)
T ss_pred ccccchhhhhhhHHHHHHHHHhcCCCCCCccc
Confidence 358999999999999754 36899885
No 102
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=27.88 E-value=36 Score=32.93 Aligned_cols=51 Identities=24% Similarity=0.432 Sum_probs=31.4
Q ss_pred ccccccccCccccccccCCCCCCCeeeccCCCceeecccccceechhhhcC-------CCCCCchhh
Q 001141 1011 EQCLICCDVGVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKK-------LTSCSCGTS 1070 (1142)
Q Consensus 1011 ~~CeLCq~KGFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k-------~~~CPkCaR 1070 (1142)
+.|.+|+..=--| |. +--||=+.--.. -.+|+..||..|..+ ...||-|.+
T Consensus 22 d~CgICr~~fdg~-----Cp---~Ck~Pgd~Cplv-~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~ 79 (85)
T PF12861_consen 22 DVCGICRMPFDGC-----CP---DCKFPGDDCPLV-WGKCSHNFHMHCILKWLSTQSSKGQCPMCRQ 79 (85)
T ss_pred CceeeEecccccC-----CC---CccCCCCCCcee-eccCccHHHHHHHHHHHccccCCCCCCCcCC
Confidence 4688887654333 32 234564432222 236999999999742 358998875
No 103
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.63 E-value=28 Score=40.39 Aligned_cols=71 Identities=25% Similarity=0.538 Sum_probs=45.0
Q ss_pred CccccHhHHhh--ccCCCCcchhHHHHHHHHHHhhhhcccccccccCccccccccCCCCCCCeeeccCCCceeecccccc
Q 001141 975 NDFFALRDLID--LSKGPFAALPAMVETVSKKILVHITEQCLICCDVGVPCCARQACDDPSSLIFTFQEGEVERCKSCEA 1052 (1142)
Q Consensus 975 ~dlYSL~DLid--V~sG~L~~Lp~lLe~l~~~~~~HI~~~CeLCq~KGFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~S 1052 (1142)
.-+||=..++. ..+|.|.+| ..+ .+.+|- +|.-|. ||-. +.| ...-.+=.-|+.
T Consensus 291 ~gfyS~~e~ip~~t~~g~lkpl--s~e----~~~ea~---------~GveCa---ICms--~fi----K~d~~~vlPC~H 346 (374)
T COG5540 291 VGFYSSSEAIPTTTTKGSLKPL--SIE----RAVEAD---------KGVECA---ICMS--NFI----KNDRLRVLPCDH 346 (374)
T ss_pred hheeeccccccccccCcceeec--hhH----hHHhcC---------CCceEE---EEhh--hhc----ccceEEEeccCc
Confidence 35777666632 236777654 222 334453 666787 7875 354 223356777999
Q ss_pred eechhhhcC-----CCCCCchh
Q 001141 1053 VFHKPCFKK-----LTSCSCGT 1069 (1142)
Q Consensus 1053 VFHk~Cf~k-----~~~CPkCa 1069 (1142)
+||..|..+ ...||-|.
T Consensus 347 ~FH~~Cv~kW~~~y~~~CPvCr 368 (374)
T COG5540 347 RFHVGCVDKWLLGYSNKCPVCR 368 (374)
T ss_pred eechhHHHHHHhhhcccCCccC
Confidence 999999864 35899885
No 104
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=27.39 E-value=41 Score=29.72 Aligned_cols=27 Identities=26% Similarity=0.523 Sum_probs=16.3
Q ss_pred ceeecccccceechhhhc----CCCCCCchh
Q 001141 1043 EVERCKSCEAVFHKPCFK----KLTSCSCGT 1069 (1142)
Q Consensus 1043 ~t~rC~~C~SVFHk~Cf~----k~~~CPkCa 1069 (1142)
..++|++|+..|=..|=. ..+.||-|.
T Consensus 20 ~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 20 SRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 579999999999999953 347999885
No 105
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=25.58 E-value=34 Score=41.49 Aligned_cols=138 Identities=25% Similarity=0.370 Sum_probs=72.5
Q ss_pred ccccccccccCCchhhhhhHhhcCCCCcccccccCceecCCCCCC---------------Ccccccc---ceeecccCcc
Q 001141 839 TCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTN---------------ETAVLPA---RVLHHWDFTR 900 (1142)
Q Consensus 839 rCAgC~~~Ii~GltsLRdfLktLsv~k~RlC~YtGkYYCs~CH~n---------------dtsVIPA---RVLhnWDFS~ 900 (1142)
.|..|..++ |++ ..-+-|..+|...|..|... ++..+|- .+|| =+=.+
T Consensus 182 ~CP~Ca~~F--~l~-----------rRrHHCRLCG~VmC~~C~k~iSle~a~~ltsss~~dt~~e~~qq~~~lH-~~~~~ 247 (505)
T KOG1842|consen 182 FCPECANSF--GLT-----------RRRHHCRLCGRVMCRDCSKFISLEIAIGLTSSSASDTHFEPNQQKDDLH-QHPQP 247 (505)
T ss_pred ccccccchh--hhH-----------HHhhhhhhcchHHHHHHHHhcChHHHHHHhhccCCCCCcCcccCccccc-CChhH
Confidence 488998876 332 12267999999999999864 2333442 3344 22233
Q ss_pred cccchhHHHHHHHhhcCccccccccCcccccccHHHHHHHHHHHHHHhhcc-ccCCcchHHHHhhcCCCCccccCCcccc
Q 001141 901 YPVSQLAKSFLDSVYNQPMLCVSAVNPLLYSKVPALQHVMGVRKKIGSMLP-YVRCPFRRSINKGLGSRRYLLESNDFFA 979 (1142)
Q Consensus 901 ypVS~iAk~fL~~i~sqPLinL~~lNP~LYs~V~eL~~Ir~LRkqL~~Mk~-YLrC~~a~sL~k~L~~R~HLLEd~dlYS 979 (1142)
-.+|....+.|.. .+-..+...--|.++.+-+.| +.+|+.+-.+.+ |++ .+.. |.+....||
T Consensus 248 iRlC~hCl~~L~~--R~~~~d~r~~~p~ivq~Ye~m---q~~~k~v~~~~p~Y~~-----~l~S-------L~~get~~t 310 (505)
T KOG1842|consen 248 IRLCMHCLDNLFR--RKLQQDEREPSPGIVQHYEHL---QVFRKEVDNLLPLYED-----SLNS-------LKEGETTYT 310 (505)
T ss_pred hHHHHHHHHHHHH--HHHhhhhccCCchHHHHHHHH---HHHHHHHHhhhHHHHH-----HHHH-------Hhccccccc
Confidence 4567666665543 233333344445555444333 334444332222 331 1211 225567899
Q ss_pred HhHHhhccCCCCcchhHHHHHHHHHHhhh
Q 001141 980 LRDLIDLSKGPFAALPAMVETVSKKILVH 1008 (1142)
Q Consensus 980 L~DLidV~sG~L~~Lp~lLe~l~~~~~~H 1008 (1142)
++++-++..--+ .+...+.-+.+++++|
T Consensus 311 lk~~~dLR~k~~-el~~s~D~~sKkI~~l 338 (505)
T KOG1842|consen 311 LKHAKDLRKKFL-ELCESIDGTSKKIANL 338 (505)
T ss_pred HhhHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 998888865432 2223344445555555
No 106
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=25.41 E-value=40 Score=27.52 Aligned_cols=18 Identities=22% Similarity=0.820 Sum_probs=12.8
Q ss_pred ceeecccccceechhhhc
Q 001141 1043 EVERCKSCEAVFHKPCFK 1060 (1142)
Q Consensus 1043 ~t~rC~~C~SVFHk~Cf~ 1060 (1142)
...+|..|+-..|+.||-
T Consensus 3 ~ll~C~~C~v~VH~~CYG 20 (36)
T PF13831_consen 3 PLLFCDNCNVAVHQSCYG 20 (36)
T ss_dssp EEEE-SSS--EEEHHHHT
T ss_pred ceEEeCCCCCcCChhhCC
Confidence 356899999999999994
No 107
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=24.64 E-value=41 Score=28.31 Aligned_cols=24 Identities=38% Similarity=0.947 Sum_probs=13.1
Q ss_pred eecc--cccceechhhhcC----C-C-CCCch
Q 001141 1045 ERCK--SCEAVFHKPCFKK----L-T-SCSCG 1068 (1142)
Q Consensus 1045 ~rC~--~C~SVFHk~Cf~k----~-~-~CPkC 1068 (1142)
.+|+ .|..-+|..|+++ . . .||.|
T Consensus 12 ~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 12 QRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp EE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred ccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 4899 6999999999853 1 2 59987
No 108
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=24.62 E-value=40 Score=34.68 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=18.1
Q ss_pred eeecccccceechhhhcCCCCCCchhhh
Q 001141 1044 VERCKSCEAVFHKPCFKKLTSCSCGTSL 1071 (1142)
Q Consensus 1044 t~rC~~C~SVFHk~Cf~k~~~CPkCaRl 1071 (1142)
-++|.+|+++||- ....||+|.+-
T Consensus 29 g~kC~~CG~v~~P----Pr~~Cp~C~~~ 52 (140)
T COG1545 29 GTKCKKCGRVYFP----PRAYCPKCGSE 52 (140)
T ss_pred EEEcCCCCeEEcC----CcccCCCCCCC
Confidence 4699999999974 33579988754
No 109
>PRK04023 DNA polymerase II large subunit; Validated
Probab=24.49 E-value=52 Score=43.48 Aligned_cols=45 Identities=20% Similarity=0.413 Sum_probs=30.8
Q ss_pred ccccccccCc--cccccccCCCCCCCeeeccCCCceeecccccceechhhhcCCCCCCchhhhh
Q 001141 1011 EQCLICCDVG--VPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKLTSCSCGTSLV 1072 (1142)
Q Consensus 1011 ~~CeLCq~KG--FICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k~~~CPkCaRlr 1072 (1142)
..|..|-..+ |.|. .|... .....+|+.|+...+. ..||+|..-.
T Consensus 627 RfCpsCG~~t~~frCP---~CG~~--------Te~i~fCP~CG~~~~~------y~CPKCG~El 673 (1121)
T PRK04023 627 RKCPSCGKETFYRRCP---FCGTH--------TEPVYRCPRCGIEVEE------DECEKCGREP 673 (1121)
T ss_pred ccCCCCCCcCCcccCC---CCCCC--------CCcceeCccccCcCCC------CcCCCCCCCC
Confidence 4799998765 5776 68852 3456789999665553 3588887543
No 110
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=24.14 E-value=57 Score=27.03 Aligned_cols=34 Identities=21% Similarity=0.588 Sum_probs=23.4
Q ss_pred cccccccCCCCCCCeeeccCCCceeecccccceechhhh
Q 001141 1021 VPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCF 1059 (1142)
Q Consensus 1021 FICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf 1059 (1142)
++|- .|.. ..++|.+... ...|..|+.|.+-.-.
T Consensus 1 m~Cp---~Cg~-~~~~~D~~~g-~~vC~~CG~Vl~e~~i 34 (43)
T PF08271_consen 1 MKCP---NCGS-KEIVFDPERG-ELVCPNCGLVLEENII 34 (43)
T ss_dssp ESBT---TTSS-SEEEEETTTT-EEEETTT-BBEE-TTB
T ss_pred CCCc---CCcC-CceEEcCCCC-eEECCCCCCEeecccc
Confidence 4576 6886 4588888775 4599999999876543
No 111
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=23.59 E-value=33 Score=31.39 Aligned_cols=19 Identities=32% Similarity=0.663 Sum_probs=8.1
Q ss_pred ceeecc--cccceechhhhcC
Q 001141 1043 EVERCK--SCEAVFHKPCFKK 1061 (1142)
Q Consensus 1043 ~t~rC~--~C~SVFHk~Cf~k 1061 (1142)
....|. .|+..||..|+.+
T Consensus 19 p~~~C~n~~C~~~fH~~CL~~ 39 (70)
T PF11793_consen 19 PDVVCPNPSCGKKFHLLCLSE 39 (70)
T ss_dssp --B--S-TT----B-SGGGHH
T ss_pred CceEcCCcccCCHHHHHHHHH
Confidence 456897 9999999999853
No 112
>COG3516 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.26 E-value=67 Score=34.54 Aligned_cols=39 Identities=15% Similarity=0.291 Sum_probs=28.7
Q ss_pred cccccHHHHHHHHHHHHHHhhccccC--CcchHHHHhhcCC
Q 001141 929 LYSKVPALQHVMGVRKKIGSMLPYVR--CPFRRSINKGLGS 967 (1142)
Q Consensus 929 LYs~V~eL~~Ir~LRkqL~~Mk~YLr--C~~a~sL~k~L~~ 967 (1142)
+-..|++|+++..+|.+|..++.|+- -.+.+.|++.|.+
T Consensus 110 Va~qVp~L~kLLeaR~~L~~L~~~ldg~~~~e~~l~~lL~n 150 (169)
T COG3516 110 VARQVPELKKLLEARTALADLKGPLDGNPAFEELLQDLLKN 150 (169)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHcC
Confidence 34469999999999999999999983 3344555555543
No 113
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=22.42 E-value=23 Score=31.82 Aligned_cols=34 Identities=12% Similarity=0.189 Sum_probs=23.6
Q ss_pred ceeecccccceechhhhc--CCCCCCchhhhhHHHh
Q 001141 1043 EVERCKSCEAVFHKPCFK--KLTSCSCGTSLVVETA 1076 (1142)
Q Consensus 1043 ~t~rC~~C~SVFHk~Cf~--k~~~CPkCaRlr~~k~ 1076 (1142)
.+.||..|+.+.-+.=+. -...||+|+-+-.-.+
T Consensus 3 ~tiRC~~CnKlLa~a~~~~yle~KCPrCK~vN~~~~ 38 (60)
T COG4416 3 QTIRCAKCNKLLAEAEGQAYLEKKCPRCKEVNEFYI 38 (60)
T ss_pred eeeehHHHhHHHHhcccceeeeecCCccceeeeeec
Confidence 367999999998776553 1247999996544333
No 114
>TIGR03358 VI_chp_5 type VI secretion protein, VC_A0107 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=21.65 E-value=63 Score=34.42 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=29.4
Q ss_pred ccccccHHHHHHHHHHHHHHhhccccC--CcchHHHHhhcC
Q 001141 928 LLYSKVPALQHVMGVRKKIGSMLPYVR--CPFRRSINKGLG 966 (1142)
Q Consensus 928 ~LYs~V~eL~~Ir~LRkqL~~Mk~YLr--C~~a~sL~k~L~ 966 (1142)
.++..|++|+++..+|++|..++.++. -.++..|++.|.
T Consensus 104 ~Ia~qVp~L~~LlelR~~L~~L~~~l~~~~~~~~~l~~~l~ 144 (159)
T TIGR03358 104 AVAKQVPELKKLLEAREALRDLKGPLDNNPDLRKLLQELLK 144 (159)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHC
Confidence 456789999999999999999999983 234445555443
No 115
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=21.63 E-value=28 Score=29.29 Aligned_cols=36 Identities=25% Similarity=0.764 Sum_probs=24.6
Q ss_pred hHhhccccccccccccccCCchhhhhhHhhcCCCCcccccccCceecCCCCC
Q 001141 831 QMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHT 882 (1142)
Q Consensus 831 qgL~sQ~yrCAgC~~~Ii~GltsLRdfLktLsv~k~RlC~YtGkYYCs~CH~ 882 (1142)
+..-...++|+.|+++|..+ .+-...|+.||..|+.
T Consensus 20 ~~~H~~Cf~C~~C~~~l~~~----------------~~~~~~~~~~C~~c~~ 55 (58)
T PF00412_consen 20 KFWHPECFKCSKCGKPLNDG----------------DFYEKDGKPYCKDCYQ 55 (58)
T ss_dssp EEEETTTSBETTTTCBTTTS----------------SEEEETTEEEEHHHHH
T ss_pred cEEEccccccCCCCCccCCC----------------eeEeECCEEECHHHHh
Confidence 34556788999999877432 2444577888888763
No 116
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=21.15 E-value=62 Score=33.66 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=20.5
Q ss_pred eecccccceechhhhcCCCCCCchhhhhH
Q 001141 1045 ERCKSCEAVFHKPCFKKLTSCSCGTSLVV 1073 (1142)
Q Consensus 1045 ~rC~~C~SVFHk~Cf~k~~~CPkCaRlr~ 1073 (1142)
..|+.|+++|.+. .+ ..||.|.+.-.
T Consensus 4 ~nC~~CgklF~~~-~~--~iCp~C~~~~e 29 (137)
T TIGR03826 4 ANCPKCGRLFVKT-GR--DVCPSCYEEEE 29 (137)
T ss_pred ccccccchhhhhc-CC--ccCHHHhHHHH
Confidence 4799999999996 33 47999997544
No 117
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=20.93 E-value=37 Score=35.20 Aligned_cols=29 Identities=21% Similarity=0.424 Sum_probs=21.1
Q ss_pred eecccccceechhhhcCCCCCCchhhhhH
Q 001141 1045 ERCKSCEAVFHKPCFKKLTSCSCGTSLVV 1073 (1142)
Q Consensus 1045 ~rC~~C~SVFHk~Cf~k~~~CPkCaRlr~ 1073 (1142)
++|.+|+.+|-..=..-..-||.|..-.-
T Consensus 2 H~Ct~Cg~~f~dgs~eil~GCP~CGg~kF 30 (131)
T PF09845_consen 2 HQCTKCGRVFEDGSKEILSGCPECGGNKF 30 (131)
T ss_pred cccCcCCCCcCCCcHHHHccCcccCCcce
Confidence 58999999998665433457998876543
No 118
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=20.66 E-value=68 Score=24.92 Aligned_cols=29 Identities=28% Similarity=0.562 Sum_probs=22.5
Q ss_pred cccccccCCCCCCCeeeccCCCceeecccccceechhh
Q 001141 1021 VPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPC 1058 (1142)
Q Consensus 1021 FICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~C 1058 (1142)
|.|. +|.. .+-+|. .++|..|.-..|..|
T Consensus 1 ~~C~---~C~~---~~~~~~---~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 1 FWCD---VCRR---KIDGFY---FYHCSECCFTLHVRC 29 (30)
T ss_pred CCCC---CCCC---CcCCCE---eEEeCCCCCeEcCcc
Confidence 4576 6874 466666 789999999999988
No 119
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=20.47 E-value=53 Score=35.56 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=15.7
Q ss_pred eecccccceechhhhcCCCCCCchhhh
Q 001141 1045 ERCKSCEAVFHKPCFKKLTSCSCGTSL 1071 (1142)
Q Consensus 1045 ~rC~~C~SVFHk~Cf~k~~~CPkCaRl 1071 (1142)
.||..|+.+|+ .....||-|---
T Consensus 140 ~rC~GC~~~f~----~~~~~Cp~CG~~ 162 (177)
T COG1439 140 LRCHGCKRIFP----EPKDFCPICGSP 162 (177)
T ss_pred EEEecCceecC----CCCCcCCCCCCc
Confidence 37888888888 344678866543
No 120
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=20.45 E-value=62 Score=40.64 Aligned_cols=51 Identities=20% Similarity=0.404 Sum_probs=32.6
Q ss_pred HHhhhhcccccccccCcc-----ccccccCCCCCCCeeeccCCCceeecccccceechhhhcCCCCCCchhh
Q 001141 1004 KILVHITEQCLICCDVGV-----PCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKLTSCSCGTS 1070 (1142)
Q Consensus 1004 ~~~~HI~~~CeLCq~KGF-----ICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k~~~CPkCaR 1070 (1142)
.+..|-. -|+.|++||. .|. .|... ..+..|..|+.++|..= . .-||.|.|
T Consensus 48 ~~~~~~~-pc~~c~gkG~V~v~~~c~---~c~G~---------gkv~~c~~cG~~~~~~~--~-~lc~~c~~ 103 (715)
T COG1107 48 LFASFEI-PCPKCRGKGTVTVYDTCP---ECGGT---------GKVLTCDICGDIIVPWE--E-GLCPECRR 103 (715)
T ss_pred ccccCCC-CCCeeccceeEEEEeecc---cCCCc---------eeEEeeccccceecCcc--c-ccChhHhh
Confidence 3445532 6999999886 476 67742 45678888888887621 1 14776664
No 121
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=20.30 E-value=63 Score=24.80 Aligned_cols=27 Identities=22% Similarity=0.482 Sum_probs=19.7
Q ss_pred eeecccccceechhhhcC-----CCCCCchhh
Q 001141 1044 VERCKSCEAVFHKPCFKK-----LTSCSCGTS 1070 (1142)
Q Consensus 1044 t~rC~~C~SVFHk~Cf~k-----~~~CPkCaR 1070 (1142)
...-..|+-.||..|+.. ...||-|..
T Consensus 12 ~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~ 43 (45)
T cd00162 12 PVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRT 43 (45)
T ss_pred ceEecCCCChhcHHHHHHHHHhCcCCCCCCCC
Confidence 445566999999999951 346998863
Done!