Query 001141
Match_columns 1142
No_of_seqs 340 out of 1205
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 13:05:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001141.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001141hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xte_A Serine/threonine-protei 99.8 1E-19 3.6E-24 180.2 8.5 95 680-784 21-116 (154)
2 3iq2_A Sorting nexin-7; SNX7, 99.8 5E-19 1.7E-23 172.9 9.8 97 680-786 22-128 (138)
3 3p0c_A Nischarin; structural g 99.8 3.4E-19 1.2E-23 172.5 8.3 93 681-783 33-125 (130)
4 1ocs_A Sorting nexin GRD19; so 99.8 7.6E-19 2.6E-23 175.7 8.5 121 642-782 23-158 (162)
5 2csk_A Sorting nexin 12; SNX12 99.7 1.4E-18 4.9E-23 170.1 8.3 93 680-783 24-131 (146)
6 4az9_A Sorting nexin-24; prote 99.7 5.6E-18 1.9E-22 164.3 11.8 87 682-782 39-125 (129)
7 2v14_A Kinesin-like motor prot 99.7 4.8E-18 1.6E-22 165.1 9.9 87 680-775 19-106 (134)
8 3lui_A Sorting nexin-17, SNX17 99.7 2.9E-18 9.8E-23 162.4 6.4 90 680-783 19-109 (115)
9 2i4k_A Sorting nexin-1, SNX1; 99.7 5E-19 1.7E-23 168.0 1.0 96 680-782 17-127 (128)
10 2ar5_A Phosphoinositide 3-kina 99.7 9.6E-18 3.3E-22 160.2 8.4 109 656-783 4-116 (121)
11 1kmd_A VAM7P, vacuolar morphog 99.7 5.3E-18 1.8E-22 160.6 5.3 89 682-783 17-115 (117)
12 1h6h_A Neutrophil cytosol fact 99.7 1.3E-17 4.5E-22 162.4 7.1 93 681-783 34-136 (143)
13 2ett_A Sorting nexin-22; PX do 99.7 1.9E-17 6.4E-22 160.4 7.7 90 680-783 28-117 (128)
14 1kq6_A NCF-1, P47PHOX, neutrop 99.6 1.8E-16 6.2E-21 154.7 8.7 107 656-783 5-122 (141)
15 3dyt_A Sorting nexin-9; 3-heli 99.6 1.5E-16 5.2E-21 176.5 6.0 106 659-783 22-129 (366)
16 2iwl_X Phosphatidylinositol-4- 99.6 1.3E-16 4.5E-21 155.7 4.4 111 653-782 16-130 (140)
17 4akv_A Sorting nexin-33; trans 99.6 1.5E-16 5.1E-21 178.2 2.8 106 659-783 43-149 (386)
18 3hpc_X SNX5 protein; sprting n 99.6 2.6E-15 8.7E-20 151.2 8.4 104 657-783 11-151 (161)
19 2l73_A NADPH oxidase organizer 99.5 9.3E-15 3.2E-19 145.2 6.8 109 657-783 8-128 (149)
20 2v6v_A BUD emergence protein 1 99.5 4.4E-14 1.5E-18 141.3 8.4 93 683-783 31-136 (156)
21 2dyb_A Neutrophil cytosol fact 99.3 2.2E-12 7.4E-17 141.7 7.3 91 682-782 38-138 (341)
22 2wwe_A Phosphoinositide-3-kina 99.2 4.5E-12 1.5E-16 123.6 5.8 105 652-781 20-126 (127)
23 2ct0_A Non-SMC element 1 homol 88.5 0.22 7.5E-06 44.6 2.6 39 1021-1070 16-60 (74)
24 3nw0_A Non-structural maintena 87.6 0.18 6.2E-06 53.7 1.8 82 958-1070 138-225 (238)
25 2lv9_A Histone-lysine N-methyl 64.5 4.4 0.00015 37.7 3.4 30 1041-1070 39-75 (98)
26 1x4j_A Ring finger protein 38; 62.7 3.1 0.0001 35.7 1.8 27 1043-1069 37-67 (75)
27 1xwh_A Autoimmune regulator; P 59.5 3.2 0.00011 35.9 1.4 40 1021-1072 9-56 (66)
28 2kwj_A Zinc finger protein DPF 58.5 8.8 0.0003 36.4 4.4 51 1011-1074 53-111 (114)
29 2puy_A PHD finger protein 21A; 57.9 8.1 0.00028 32.7 3.6 43 1020-1074 5-55 (60)
30 1wev_A Riken cDNA 1110020M19; 57.6 5 0.00017 36.7 2.4 30 1043-1072 32-73 (88)
31 3ng2_A RNF4, snurf, ring finge 57.2 3.3 0.00011 34.6 1.1 46 1020-1070 10-59 (71)
32 1faq_A RAF-1; transferase, ser 57.1 7.1 0.00024 31.7 3.0 37 1019-1066 13-50 (52)
33 2ku3_A Bromodomain-containing 56.7 6.9 0.00024 34.7 3.0 46 1021-1073 17-68 (71)
34 2ect_A Ring finger protein 126 56.6 7.1 0.00024 33.4 3.1 22 1049-1070 35-60 (78)
35 2xeu_A Ring finger protein 4; 55.6 2.8 9.7E-05 34.2 0.4 46 1020-1070 3-52 (64)
36 2enn_A NPKC-theta, protein kin 55.5 10 0.00035 33.7 4.0 41 1019-1066 33-74 (77)
37 2kiz_A E3 ubiquitin-protein li 55.2 5.6 0.00019 33.3 2.2 24 1046-1069 31-58 (69)
38 2yuu_A NPKC-delta, protein kin 54.9 9.2 0.00031 34.3 3.6 41 1019-1066 27-68 (83)
39 1iym_A EL5; ring-H2 finger, ub 54.5 9.5 0.00032 30.4 3.3 27 1044-1070 21-51 (55)
40 2l5u_A Chromodomain-helicase-D 54.0 11 0.00037 32.2 3.7 39 1020-1070 11-57 (61)
41 1kbe_A Kinase suppressor of RA 52.6 6.6 0.00022 32.8 2.1 34 1021-1065 15-48 (49)
42 2e6s_A E3 ubiquitin-protein li 51.7 15 0.00052 33.0 4.5 43 1012-1060 12-57 (77)
43 3lqh_A Histone-lysine N-methyl 51.5 10 0.00036 39.1 3.9 48 1019-1073 1-65 (183)
44 1wil_A KIAA1045 protein; ring 51.5 5 0.00017 37.4 1.3 20 1042-1061 27-46 (89)
45 3o36_A Transcription intermedi 51.5 7.5 0.00026 39.3 2.8 41 1021-1073 5-53 (184)
46 2lri_C Autoimmune regulator; Z 51.4 12 0.00041 32.7 3.7 39 1020-1070 12-58 (66)
47 1x4u_A Zinc finger, FYVE domai 51.1 16 0.00055 32.8 4.6 66 835-914 12-79 (84)
48 2enz_A NPKC-theta, protein kin 49.9 11 0.00039 32.2 3.2 41 1019-1066 22-63 (65)
49 2l43_A N-teminal domain from h 49.5 5.6 0.00019 36.5 1.3 37 1042-1078 40-82 (88)
50 2eli_A Protein kinase C alpha 48.8 13 0.00045 33.6 3.7 41 1019-1066 27-68 (85)
51 2ea6_A Ring finger protein 4; 48.5 7.3 0.00025 32.1 1.8 25 1046-1070 36-64 (69)
52 1fp0_A KAP-1 corepressor; PHD 48.3 12 0.00042 34.7 3.4 41 1019-1071 24-72 (88)
53 3shb_A E3 ubiquitin-protein li 48.1 15 0.0005 33.2 3.8 41 1011-1060 11-57 (77)
54 2ep4_A Ring finger protein 24; 47.6 9 0.00031 32.4 2.3 22 1049-1070 35-60 (74)
55 2l0b_A E3 ubiquitin-protein li 47.2 9 0.00031 34.3 2.3 25 1046-1070 57-85 (91)
56 1f62_A Transcription factor WS 47.0 12 0.00041 30.4 2.8 29 1042-1070 13-49 (51)
57 2ecm_A Ring finger and CHY zin 46.9 11 0.00039 29.8 2.6 27 1044-1070 21-51 (55)
58 1vfy_A Phosphatidylinositol-3- 46.6 13 0.00045 32.7 3.2 60 838-915 12-71 (73)
59 1ptq_A Protein kinase C delta 45.8 17 0.00059 29.1 3.5 37 1019-1062 10-46 (50)
60 2vrw_B P95VAV, VAV1, proto-onc 45.3 14 0.00049 41.0 4.0 41 1019-1066 356-396 (406)
61 3u5n_A E3 ubiquitin-protein li 44.9 10 0.00034 39.2 2.5 41 1021-1073 8-56 (207)
62 3dpl_R Ring-box protein 1; ubi 44.6 4.3 0.00015 38.2 -0.2 55 1011-1070 38-97 (106)
63 2ysm_A Myeloid/lymphoid or mix 44.4 17 0.00059 33.8 3.9 45 1012-1069 50-102 (111)
64 1y8f_A UNC-13 homolog A, MUNC1 42.1 14 0.00047 31.8 2.6 41 1019-1066 23-64 (66)
65 1mm2_A MI2-beta; PHD, zinc fin 41.6 15 0.00052 31.3 2.7 28 1043-1070 20-55 (61)
66 4a0k_B E3 ubiquitin-protein li 41.5 5.5 0.00019 38.4 0.0 56 1011-1071 49-109 (117)
67 1gh9_A 8.3 kDa protein (gene M 41.0 2.4 8.2E-05 38.0 -2.4 34 1044-1078 4-37 (71)
68 1v87_A Deltex protein 2; ring- 40.6 9.5 0.00032 35.0 1.4 28 1044-1071 55-91 (114)
69 2yql_A PHD finger protein 21A; 40.5 16 0.00055 30.5 2.7 38 1020-1069 9-54 (56)
70 3uej_A NPKC-delta, protein kin 40.2 15 0.00051 31.4 2.5 41 1019-1066 19-60 (65)
71 2ecl_A Ring-box protein 2; RNF 39.7 12 0.00042 32.8 2.0 51 1011-1070 16-72 (81)
72 2k16_A Transcription initiatio 39.3 16 0.00054 31.9 2.6 43 1020-1071 18-68 (75)
73 2ro1_A Transcription intermedi 38.7 15 0.0005 37.8 2.6 38 1022-1071 4-49 (189)
74 3lrq_A E3 ubiquitin-protein li 38.7 11 0.00038 34.2 1.6 28 1044-1071 35-67 (100)
75 3v43_A Histone acetyltransfera 38.1 29 0.00099 32.7 4.3 47 1011-1069 56-110 (112)
76 2co8_A NEDD9 interacting prote 37.5 13 0.00044 32.7 1.7 38 830-883 35-74 (82)
77 3t7l_A Zinc finger FYVE domain 37.5 37 0.0012 31.1 4.8 62 835-916 18-79 (90)
78 2e6r_A Jumonji/ARID domain-con 37.5 12 0.00042 34.5 1.6 41 1022-1071 18-66 (92)
79 2fnf_X Putative RAS effector N 37.1 24 0.00081 31.2 3.3 33 1020-1062 35-67 (72)
80 2db6_A SH3 and cysteine rich d 36.7 12 0.00041 33.0 1.4 41 1019-1066 27-69 (74)
81 1wep_A PHF8; structural genomi 36.5 21 0.0007 31.8 2.9 40 1028-1072 16-64 (79)
82 1wem_A Death associated transc 35.9 24 0.00083 30.9 3.2 38 1028-1071 20-70 (76)
83 1joc_A EEA1, early endosomal a 35.3 26 0.00087 34.0 3.5 55 837-911 69-123 (125)
84 3ask_A E3 ubiquitin-protein li 35.2 23 0.00078 38.0 3.4 49 1012-1069 160-223 (226)
85 1rfh_A RAS association (ralgds 35.2 27 0.00091 29.6 3.2 32 1021-1062 23-54 (59)
86 4b6d_A RAC GTPase-activating p 34.7 33 0.0011 29.6 3.8 40 1019-1066 18-58 (61)
87 2gmg_A Hypothetical protein PF 34.6 12 0.00041 35.9 1.1 26 1046-1072 69-94 (105)
88 2yw8_A RUN and FYVE domain-con 34.2 22 0.00075 31.9 2.7 58 836-913 18-75 (82)
89 3asl_A E3 ubiquitin-protein li 33.9 29 0.00099 30.5 3.3 43 1012-1060 4-49 (70)
90 1wfk_A Zinc finger, FYVE domai 33.7 29 0.001 31.7 3.5 60 837-915 9-68 (88)
91 1dvp_A HRS, hepatocyte growth 32.5 28 0.00096 36.1 3.6 57 838-912 162-218 (220)
92 1we9_A PHD finger family prote 32.3 26 0.0009 29.6 2.8 44 1020-1072 6-59 (64)
93 1z2q_A LM5-1; membrane protein 32.1 34 0.0012 30.8 3.6 61 835-913 19-79 (84)
94 2ckl_B Ubiquitin ligase protei 31.8 20 0.0007 35.1 2.3 26 1045-1070 68-98 (165)
95 2ri7_A Nucleosome-remodeling f 31.3 24 0.00083 35.1 2.7 30 1043-1072 22-60 (174)
96 4ap4_A E3 ubiquitin ligase RNF 31.2 14 0.00048 34.0 1.0 47 1019-1070 6-56 (133)
97 2ecv_A Tripartite motif-contai 29.1 24 0.00083 30.0 2.0 23 1049-1071 36-68 (85)
98 2xb1_A Pygopus homolog 2, B-ce 28.6 27 0.00092 32.9 2.4 46 1019-1072 2-62 (105)
99 1x68_A FHL5 protein; four-and- 28.4 31 0.001 29.6 2.5 37 831-883 29-65 (76)
100 3ky9_A Proto-oncogene VAV; cal 28.2 31 0.0011 40.5 3.4 40 1020-1066 529-568 (587)
101 2yt5_A Metal-response element- 27.7 38 0.0013 28.8 2.9 45 1020-1071 6-61 (66)
102 1z60_A TFIIH basal transcripti 27.7 29 0.00099 30.2 2.2 27 1043-1069 29-59 (59)
103 1chc_A Equine herpes virus-1 r 27.5 30 0.001 28.6 2.3 24 1046-1069 20-47 (68)
104 2d8x_A Protein pinch; LIM doma 26.9 14 0.00049 31.0 0.2 36 831-882 25-60 (70)
105 2y43_A E3 ubiquitin-protein li 26.8 38 0.0013 30.3 3.0 25 1046-1070 37-65 (99)
106 4ap4_A E3 ubiquitin ligase RNF 25.9 17 0.00058 33.4 0.5 26 1045-1070 92-121 (133)
107 3zyq_A Hepatocyte growth facto 25.8 40 0.0014 35.4 3.3 56 839-912 166-221 (226)
108 2ecw_A Tripartite motif-contai 25.4 24 0.00081 30.0 1.3 23 1049-1071 36-68 (85)
109 2vpb_A Hpygo1, pygopus homolog 25.0 29 0.00098 30.3 1.7 33 1020-1060 8-41 (65)
110 3kv5_D JMJC domain-containing 24.7 39 0.0013 39.6 3.3 45 1019-1073 36-90 (488)
111 1x64_A Alpha-actinin-2 associa 24.6 16 0.00056 32.3 0.1 37 830-882 44-80 (89)
112 1wig_A KIAA1808 protein; LIM d 24.6 20 0.00069 30.8 0.7 37 832-883 26-62 (73)
113 2djb_A Polycomb group ring fin 24.3 41 0.0014 28.4 2.6 24 1047-1070 31-58 (72)
114 3o7a_A PHD finger protein 13 v 23.3 40 0.0014 27.7 2.2 37 1028-1070 8-51 (52)
115 2ct2_A Tripartite motif protei 23.1 39 0.0013 29.1 2.2 24 1048-1071 35-65 (88)
116 1y02_A CARP2, FYVE-ring finger 23.0 48 0.0016 32.3 3.0 49 838-912 20-68 (120)
117 2lcq_A Putative toxin VAPC6; P 22.8 23 0.00079 35.0 0.8 24 1044-1069 132-155 (165)
118 2cor_A Pinch protein; LIM doma 22.8 19 0.00066 31.4 0.2 42 831-889 35-76 (79)
119 2ecn_A Ring finger protein 141 22.8 25 0.00085 29.4 0.9 23 1048-1070 30-56 (70)
120 2ckl_A Polycomb group ring fin 22.6 46 0.0016 30.3 2.7 25 1046-1070 30-58 (108)
121 3f6q_B LIM and senescent cell 22.4 17 0.00057 30.3 -0.3 16 833-848 35-50 (72)
122 3v43_A Histone acetyltransfera 22.2 65 0.0022 30.3 3.7 20 1041-1060 23-42 (112)
123 3o70_A PHD finger protein 13; 21.8 61 0.0021 28.3 3.2 42 1019-1070 18-66 (68)
124 2ecj_A Tripartite motif-contai 21.7 33 0.0011 27.3 1.4 20 1049-1068 32-58 (58)
125 2ecy_A TNF receptor-associated 21.7 40 0.0014 27.9 1.9 23 1048-1070 31-58 (66)
126 2dar_A PDZ and LIM domain prot 21.6 23 0.00078 31.4 0.4 37 830-882 44-80 (90)
127 2lbm_A Transcriptional regulat 21.1 52 0.0018 32.9 2.9 30 1019-1060 62-91 (142)
128 2ysj_A Tripartite motif-contai 20.9 71 0.0024 26.0 3.3 20 1049-1068 37-63 (63)
129 2ehe_A Four and A half LIM dom 20.3 49 0.0017 28.6 2.3 36 832-883 38-73 (82)
130 1x4l_A Skeletal muscle LIM-pro 20.2 25 0.00084 29.7 0.4 36 832-883 30-65 (72)
131 2ysl_A Tripartite motif-contai 20.2 28 0.00095 29.2 0.7 22 1049-1070 37-65 (73)
132 1nyp_A Pinch protein; LIM doma 20.1 23 0.00079 29.4 0.1 35 831-881 25-59 (66)
No 1
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A
Probab=99.79 E-value=1e-19 Score=180.22 Aligned_cols=95 Identities=29% Similarity=0.506 Sum_probs=87.3
Q ss_pred cccccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCcccccccccccC-CCCHHHHHHHHHHHHHH
Q 001141 680 GVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFG-NVSPLVVAHRSVLIQEC 758 (1142)
Q Consensus 680 GvksYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~~l~LP~~p~sV~K~PKKlfG-n~speFIEeRRk~LE~Y 758 (1142)
|.+.||+|.|+|+.+...|+|+|||+||.+||++|++.||...++|| +|+++| +++++|||+||++||.|
T Consensus 21 ~~~~~~~Y~I~v~~~~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~plP---------~K~~~g~~~~~~~ie~Rr~~Le~y 91 (154)
T 1xte_A 21 KKKRFTVYKVLVSVGRSEWFVFRRYAEFDKLYNSLKKQFPAMALKIP---------AKRIFGDNFDPDFIKQRRAGLNEF 91 (154)
T ss_dssp TTEEEEEEEEEEEETTEEEEEEEEHHHHHHHHHHHHHHCGGGCCCCC---------CSCCSSCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEEEECCEEEEEEeeHHHHHHHHHHHHHHCCCCcccCC---------CccccCCCCCHHHHHHHHHHHHHH
Confidence 56799999999999989999999999999999999999988766788 599999 89999999999999999
Q ss_pred HHHHHhcCCCCCCccccccccccccc
Q 001141 759 LQSILHSSSFSSPPNALITFLSQQES 784 (1142)
Q Consensus 759 Lq~LL~h~~~Ls~S~vL~eFLe~s~s 784 (1142)
|+.|+.| +.++.+..|+.||+....
T Consensus 92 L~~l~~~-p~l~~s~~l~~FL~~~~~ 116 (154)
T 1xte_A 92 IQNLVRY-PELYNHPDVRAFLQMDSP 116 (154)
T ss_dssp HHHHTTC-HHHHTSHHHHHHTTTTCG
T ss_pred HHHHHcC-hhhccChHHHHHhCCCCC
Confidence 9999997 467889999999998765
No 2
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens}
Probab=99.77 E-value=5e-19 Score=172.85 Aligned_cols=97 Identities=21% Similarity=0.291 Sum_probs=81.8
Q ss_pred cccccEEEEEEEEeC-----CceEEEEeecccHHHHHHHHHhhcccCCC-CCCCCCcccccccccccC----CCCHHHHH
Q 001141 680 GVKEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSVEKESRKIFG----NVSPLVVA 749 (1142)
Q Consensus 680 GvksYTVY~I~Vksg-----~~eWtV~RRYSDF~~LHqrLke~fp~~~l-~LP~~p~sV~K~PKKlfG----n~speFIE 749 (1142)
|.++||+|.|+|++. ...|+|+|||+||.|||++|++.||...+ +|| +|++++ +++++|||
T Consensus 22 g~~~yv~Y~I~v~t~~~~f~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP---------~K~~~~~~~~~~~~~fie 92 (138)
T 3iq2_A 22 TIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLP---------EKFIVKGMVERFNDDFIE 92 (138)
T ss_dssp SSCEEEEEEEEEESCSSSSSCCEEEEEEEHHHHHHHHHHHHHHCTTSCCCCCC---------CCC----CCGGGCHHHHH
T ss_pred CCCCEEEEEEEEEECCCCcCCCeEEEEcChHHHHHHHHHHHHHCcCcccCCCC---------cchhhccccccCCHHHHH
Confidence 678999999999974 46899999999999999999999987653 667 577764 57999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCccccccccccccccC
Q 001141 750 HRSVLIQECLQSILHSSSFSSPPNALITFLSQQESLR 786 (1142)
Q Consensus 750 eRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~s~sf~ 786 (1142)
+||++||.||++|++|+ .++.++.|+.||+......
T Consensus 93 ~Rr~~Le~fL~~l~~~p-~l~~s~~~~~FL~~~~~~~ 128 (138)
T 3iq2_A 93 TRRKALHKFLNRIADHP-TLTFNEDFKIFLTAQAWEL 128 (138)
T ss_dssp HHHHHHHHHHHHHHHST-TGGGCHHHHHHHHTTCBC-
T ss_pred HHHHHHHHHHHHHHcCH-hhhcChHHHhhhCCCCCCc
Confidence 99999999999999975 6799999999999876543
No 3
>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens}
Probab=99.77 E-value=3.4e-19 Score=172.48 Aligned_cols=93 Identities=33% Similarity=0.480 Sum_probs=84.9
Q ss_pred ccccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCcccccccccccCCCCHHHHHHHHHHHHHHHH
Q 001141 681 VKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQ 760 (1142)
Q Consensus 681 vksYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~~l~LP~~p~sV~K~PKKlfGn~speFIEeRRk~LE~YLq 760 (1142)
.+.||+|.|+|+.+...|+|+||||||.+||++|++.++...++|| ||+++|+++++|||+||++||.||+
T Consensus 33 ~~~y~~Y~I~v~~~~~~~~V~RRYSdF~~L~~~L~~~~~~~~p~lP---------~K~~~g~~~~~~ie~Rr~~Le~yL~ 103 (130)
T 3p0c_A 33 VDTYTVYIIQVTDGSHEWTVKHRYSDFHDLHEKLVAERKIDKNLLP---------PKKIIGKNSRSLVEKREKDLEVYLQ 103 (130)
T ss_dssp SSSSCEEEEEEECSSCEEEEEEEHHHHHHHHHHHHHTTSSCTTSCC---------CCCCCSCCCSCSHHHHHHHHHHHHH
T ss_pred cCCEEEEEEEEEECCeEEEEEehHHHHHHHHHHHHHHcCCCCCCCC---------CccccccCCHHHHHHHHHHHHHHHH
Confidence 4689999999999889999999999999999999999976656788 5999999999999999999999999
Q ss_pred HHHhcCCCCCCcccccccccccc
Q 001141 761 SILHSSSFSSPPNALITFLSQQE 783 (1142)
Q Consensus 761 ~LL~h~~~Ls~S~vL~eFLe~s~ 783 (1142)
.|++|+ .+..++.|+.||++++
T Consensus 104 ~l~~~p-~l~~s~~l~~FL~~~~ 125 (130)
T 3p0c_A 104 KLLAAF-PGVTPRVLAHFLHFHF 125 (130)
T ss_dssp HHHHTS-CSEECHHHHHHHHSCT
T ss_pred HHHcCh-hhhcCHHHHHHhCCCc
Confidence 999985 5789999999999864
No 4
>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A*
Probab=99.76 E-value=7.6e-19 Score=175.69 Aligned_cols=121 Identities=21% Similarity=0.272 Sum_probs=90.0
Q ss_pred CCCCCCCcCCCCccccceEEEecccccc--CCcccccceecccccEEEEEEEEe-----CCceEEEEeecccHHHHHHHH
Q 001141 642 SGTDDAYPLTLVPLRIDGVEVIGAKQKK--GDVSLSERLVGVKEYTVYKIRVWS-----GKDQWEVERRYRDFYTLYRRL 714 (1142)
Q Consensus 642 Ss~ddAY~l~~~~~~Id~VEVv~~kqk~--G~vS~servvGvksYTVY~I~Vks-----g~~eWtV~RRYSDF~~LHqrL 714 (1142)
.+.++.|..+...+ .|+|..+.... | ..|.+.||+|.|+|++ ....|+|+|||+||.|||++|
T Consensus 23 ~~~~~~~~~p~~~l---~i~V~dp~~~~~~g-------~~~~~~yv~Y~I~v~~~~~~f~~~~~~V~RRYsdF~~Lh~~L 92 (162)
T 1ocs_A 23 PSYSEIYAEPENFL---EIEVHNPKTHIPNG-------MDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCL 92 (162)
T ss_dssp -------CCSSCCE---EEEEEEEEEECCCS-------TTSCCCEEEEEEEEEECCTTCSCSEEEEEEEHHHHHHHHHHH
T ss_pred CChhhhccCCCCeE---EEEEeCCEEeeccC-------CCCCCCeEEEEEEEEECCCCCCcceeEEEeeHHHHHHHHHHH
Confidence 45567777655543 45565554331 2 0257899999999988 357899999999999999999
Q ss_pred Hhhc-----ccCCC-CCCCCCcccccccccccC-CCCHHHHHHHHHHHHHHHHHHHhcCCCCCC-ccccccccccc
Q 001141 715 KSLS-----ADEGW-SLPSPWSSVEKESRKIFG-NVSPLVVAHRSVLIQECLQSILHSSSFSSP-PNALITFLSQQ 782 (1142)
Q Consensus 715 ke~f-----p~~~l-~LP~~p~sV~K~PKKlfG-n~speFIEeRRk~LE~YLq~LL~h~~~Ls~-S~vL~eFLe~s 782 (1142)
++.| |...+ +|| +|+++| +++++|||+||++||.||+.|+.|+ .++. +++|+.||+..
T Consensus 93 ~~~~~~~~~p~~~iP~lP---------~K~~~~~~~~~~fie~Rr~~Le~fL~~l~~~p-~l~~~s~~l~~FL~~~ 158 (162)
T 1ocs_A 93 IKEISMLNHPKVMVPHLP---------GKILLSNRFSNEVIEERRQGLNTWMQSVAGHP-LLQSGSKVLVRFIEAE 158 (162)
T ss_dssp HHHHHHTTCTTCCCCCCT---------TCCCSSCTTSHHHHHHHHHHHHHHHHHHHTCH-HHHHHCHHHHHHHHCS
T ss_pred HHHhccccCCCccCCCCC---------CCcccccCCCHHHHHHHHHHHHHHHHHHHcCH-HhhhCCHHHHHhCCCc
Confidence 9998 55433 666 588874 5999999999999999999999975 5676 88999999875
No 5
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.4e-18 Score=170.13 Aligned_cols=93 Identities=22% Similarity=0.332 Sum_probs=79.6
Q ss_pred cccccEEEEEEEEeC-----CceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCccccccccccc---------CCCC
Q 001141 680 GVKEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIF---------GNVS 744 (1142)
Q Consensus 680 GvksYTVY~I~Vksg-----~~eWtV~RRYSDF~~LHqrLke~fp~~~-l~LP~~p~sV~K~PKKlf---------Gn~s 744 (1142)
|.+.||+|.|+|++. ...|+|+|||+||.+||++|++. +... ++|| +|+++ |+++
T Consensus 24 g~~~yv~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~iP~lP---------~K~~~~~~~~~~~~g~~~ 93 (146)
T 2csk_A 24 GRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERD-SKIVVPPLP---------GKALKRQLPFRGDEGIFE 93 (146)
T ss_dssp SSSCEEEEEEEEECCCSSSSCSEEEEEECHHHHHHHHHHHSSS-SSCCCCCCS---------CCCCCCSSTTCCCSSCCC
T ss_pred CCCCEEEEEEEEEECCCCcCcCceEEEecHHHHHHHHHHHHhc-cCCcCCCCC---------CCchhhccccccccCCCC
Confidence 578999999999875 46899999999999999999975 4322 2566 57776 6899
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccccc
Q 001141 745 PLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQE 783 (1142)
Q Consensus 745 peFIEeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~s~ 783 (1142)
++|||+||++||.||+.|++|+ .++.+++|+.||+...
T Consensus 94 ~~fie~Rr~~Le~fL~~l~~~p-~l~~s~~l~~FL~~~~ 131 (146)
T 2csk_A 94 ESFIEERRQGLEQFINKIAGHP-LAQNERCLHMFLQEEA 131 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCH-HHHHCHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCh-hhccCcHHHhhcCCCc
Confidence 9999999999999999999985 6788999999999863
No 6
>4az9_A Sorting nexin-24; protein transport; 1.75A {Homo sapiens}
Probab=99.74 E-value=5.6e-18 Score=164.28 Aligned_cols=87 Identities=29% Similarity=0.450 Sum_probs=75.8
Q ss_pred cccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCcccccccccccCCCCHHHHHHHHHHHHHHHHH
Q 001141 682 KEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQS 761 (1142)
Q Consensus 682 ksYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~~l~LP~~p~sV~K~PKKlfGn~speFIEeRRk~LE~YLq~ 761 (1142)
++||+|.|+|+.++..|+|+||||||.+||++|++.++. ++|| +|.+++++++|||+||++||.||+.
T Consensus 39 k~y~vY~I~v~~~~~~w~V~RRYsdF~~L~~~L~~~~~~--p~lP----------~K~~~~~~~~~ie~Rr~~Le~yL~~ 106 (129)
T 4az9_A 39 RGYTVFKIEVLMNGRKHFVEKRYSEFHALHKKLKKCIKT--PEIP----------SKHVRNWVPKVLEQRRQGLETYLQA 106 (129)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEHHHHHHHHHHHTTTSCC--CCCC----------CSCCSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEEECCEEEEEEeeHHHHHHHHHHHHHhCCC--CCCC----------cccccCCCHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999987753 2444 5667899999999999999999999
Q ss_pred HHhcCCCCCCccccccccccc
Q 001141 762 ILHSSSFSSPPNALITFLSQQ 782 (1142)
Q Consensus 762 LL~h~~~Ls~S~vL~eFLe~s 782 (1142)
|+.++.. .+++|.+||++.
T Consensus 107 ll~~~~~--~~~~l~~FL~~~ 125 (129)
T 4az9_A 107 VILENEE--LPKLFLDFLNVR 125 (129)
T ss_dssp HHHHCSS--CCHHHHHHTTC-
T ss_pred HHhCchh--hCHHHHHHCCCC
Confidence 9998653 367899999874
No 7
>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens}
Probab=99.73 E-value=4.8e-18 Score=165.08 Aligned_cols=87 Identities=23% Similarity=0.386 Sum_probs=78.0
Q ss_pred cccccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCCHHHHHHHHHHHHHH
Q 001141 680 GVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQEC 758 (1142)
Q Consensus 680 GvksYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~~-l~LP~~p~sV~K~PKKlfGn~speFIEeRRk~LE~Y 758 (1142)
|.+.||+|.|+|+.+...|+|+||||||.+||++|++.||... ++|| +|+++|+++++|||+||++||.|
T Consensus 19 ~~~~~~~Y~I~v~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~~p~lP---------~K~~~~~~~~~~ie~Rr~~Le~y 89 (134)
T 2v14_A 19 GKDAHFEFEVKITVLDETWTVFRRYSRFREMHKTLKLKYAELAALEFP---------PKKLFGNKDERVIAERRSHLEKY 89 (134)
T ss_dssp TTSCEEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHCGGGGGCCCC---------CCCSSCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEEEECCeEEEEEeeHHHHHHHHHHHHHHCCCCCCCCCc---------CCccccCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999998754 4778 59999999999999999999999
Q ss_pred HHHHHhcCCCCCCcccc
Q 001141 759 LQSILHSSSFSSPPNAL 775 (1142)
Q Consensus 759 Lq~LL~h~~~Ls~S~vL 775 (1142)
|+.|++|+..+++++.+
T Consensus 90 L~~ll~~~~~l~~sp~~ 106 (134)
T 2v14_A 90 LRDFFSVMLQSATSPLH 106 (134)
T ss_dssp HHHHHHHHHHCTTSTTC
T ss_pred HHHHHhChHhhcCCHHH
Confidence 99999987657777654
No 8
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Probab=99.72 E-value=2.9e-18 Score=162.37 Aligned_cols=90 Identities=20% Similarity=0.395 Sum_probs=78.0
Q ss_pred cccccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCCHHHHHHHHHHHHHH
Q 001141 680 GVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQEC 758 (1142)
Q Consensus 680 GvksYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~~-l~LP~~p~sV~K~PKKlfGn~speFIEeRRk~LE~Y 758 (1142)
|.++||+|.|+|. ..|.|+|||+||.+||++|++.||... ++|| +|++++ ++++|||+||++||.|
T Consensus 19 g~~~y~~Y~I~v~---~~~~V~RRYsdF~~L~~~L~~~~~~~~~P~lP---------~K~~~~-~~~~~ie~Rr~~Le~y 85 (115)
T 3lui_A 19 GGSAYVAYNIHVN---GVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP---------PKKLFS-LTPAEVEQRREQLEKY 85 (115)
T ss_dssp --CCEEEEEEEET---TEEEEEEEHHHHHHHHHHHHHHHCSTTSCCCC---------CCCSSC-CCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEEC---CeEEEEecHHHHHHHHHHHHHHcCCCcCCCCC---------CCcccC-CCHHHHHHHHHHHHHH
Confidence 6789999999984 589999999999999999999998754 3667 588884 8999999999999999
Q ss_pred HHHHHhcCCCCCCcccccccccccc
Q 001141 759 LQSILHSSSFSSPPNALITFLSQQE 783 (1142)
Q Consensus 759 Lq~LL~h~~~Ls~S~vL~eFLe~s~ 783 (1142)
|+.|+.| +.+..++.|+.||+.+.
T Consensus 86 L~~l~~~-p~l~~s~~~~~FL~~~~ 109 (115)
T 3lui_A 86 MQAVRQD-PLLGSSETFNSFLRRAQ 109 (115)
T ss_dssp HHHHHHS-HHHHHCHHHHHHHHHHH
T ss_pred HHHHHcC-hhhhcChHHHHHHCcCH
Confidence 9999997 45788999999998764
No 9
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens}
Probab=99.72 E-value=5e-19 Score=168.01 Aligned_cols=96 Identities=25% Similarity=0.511 Sum_probs=80.6
Q ss_pred cccccEEEEEEEEeC-----CceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCcccccccccccCC----------CC
Q 001141 680 GVKEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGN----------VS 744 (1142)
Q Consensus 680 GvksYTVY~I~Vksg-----~~eWtV~RRYSDF~~LHqrLke~fp~~~l~LP~~p~sV~K~PKKlfGn----------~s 744 (1142)
|.+.|++|.|++++. ...|+|+|||+||.+||++|++.||..+..+|+.| +|+++++ ++
T Consensus 17 g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iP~lP------~K~~~~~~~~~~~~~~~~~ 90 (128)
T 2i4k_A 17 GMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPP------EKSLIGMTKVKVGKEDSSS 90 (128)
T ss_dssp SSCCCBCCCBCCCCCSSSSCSSCCCBCCCHHHHHHHHHHHHHTCSSSSCCCCSSS------SCCSSSSSSCCCCSCCCSS
T ss_pred CCcCEEEEEEEEEEcCCCCCCCeEEEEeEhHHHHHHHHHHHHhCCCCCcCcCCCC------CCcccchhhhhhcCCCCCC
Confidence 568999999999874 57899999999999999999999986443333222 5777763 58
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccc
Q 001141 745 PLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQ 782 (1142)
Q Consensus 745 peFIEeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~s 782 (1142)
++|||+||++||.||+.|++|+ .++.+++|+.||+.+
T Consensus 91 ~~~ie~Rr~~Le~fL~~l~~~p-~l~~s~~~~~FL~~~ 127 (128)
T 2i4k_A 91 AEFLEKRRAALERYLQRIVNHP-TMLQDPDVREFLEKE 127 (128)
T ss_dssp TTHHHHHHHHHHHHHHHHHHCH-HHHCSHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCc-ccccChHHHHhhCCC
Confidence 9999999999999999999975 679999999999865
No 10
>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A
Probab=99.71 E-value=9.6e-18 Score=160.25 Aligned_cols=109 Identities=24% Similarity=0.326 Sum_probs=90.2
Q ss_pred ccceEEEeccccccCCcccccceecccccEEEEEEEEeCC--ceEEEEeecccHHHHHHHHHhhcccCCC-CCCCCCccc
Q 001141 656 RIDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGK--DQWEVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSV 732 (1142)
Q Consensus 656 ~Id~VEVv~~kqk~G~vS~servvGvksYTVY~I~Vksg~--~eWtV~RRYSDF~~LHqrLke~fp~~~l-~LP~~p~sV 732 (1142)
.|..|.|.+...+.. +.+.|+ |.|+|+..+ ..|.|+|||+||.+||++|++.||...+ +||
T Consensus 4 ~i~~v~V~~~ek~~~---------~~k~y~-Y~I~v~~~~~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP------ 67 (121)
T 2ar5_A 4 RIKEVSVFTYHKKYN---------PDKHYI-YVVRILREGQIEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFP------ 67 (121)
T ss_dssp SEEEEEEEEEECCCS---------SSSCCE-EEEEEEETTCSSCEEEEEEHHHHHHHHHHHHHHSCGGGSCCCC------
T ss_pred eEEEEEECcEEEEec---------CCCcEE-EEEEEEECCCceeEEEEEEHHHHHHHHHHHHHHCCCCCCCCCC------
Confidence 466777777644321 334455 999999865 5899999999999999999999997543 677
Q ss_pred ccccccccCCC-CHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccccc
Q 001141 733 EKESRKIFGNV-SPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQE 783 (1142)
Q Consensus 733 ~K~PKKlfGn~-speFIEeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~s~ 783 (1142)
+|+++|++ +.+|+|+||++||.||+.|+++++.++.++.+..||+++-
T Consensus 68 ---~K~~~g~~~~~~~~e~Rr~~Le~yL~~ll~~p~~i~~s~~v~~Ff~~~~ 116 (121)
T 2ar5_A 68 ---NRMVLGRTHIKDVAAKRKIELNSYLQSLMNASTDVAECDLVCTFFHGSH 116 (121)
T ss_dssp ---CCCCSSSSSTTHHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHHTSSSC
T ss_pred ---CCeecCccCcHHHHHHHHHHHHHHHHHHHhCCchhcCCHHHHHHcCCcc
Confidence 58889885 6789999999999999999998888999999999999864
No 11
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1
Probab=99.70 E-value=5.3e-18 Score=160.57 Aligned_cols=89 Identities=16% Similarity=0.257 Sum_probs=77.2
Q ss_pred cccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccCCC-CCCCCCccccccccccc-------CCCCHHHHHHHHH
Q 001141 682 KEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSVEKESRKIF-------GNVSPLVVAHRSV 753 (1142)
Q Consensus 682 ksYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~~l-~LP~~p~sV~K~PKKlf-------Gn~speFIEeRRk 753 (1142)
+.||+|.|+| ..|+|+||||||.+||++|++.++.... +|| +|+++ ++++++|||+||+
T Consensus 17 ~~~~~Y~I~v----~~~~V~RRYsdF~~L~~~L~~~~~~~~P~~lP---------~K~~~~~~~~~~~~~~~~~ie~Rr~ 83 (117)
T 1kmd_A 17 PKYVLYGVST----PNKRLYKRYSEFWKLKTRLERDVGSTIPYDFP---------EKPGVLDRRWQRRYDDPEMIDERRI 83 (117)
T ss_dssp SSCEEEEEEC----SSCCEEECHHHHHHHHHHHHHHHCSCCCCCCC---------CCCCSSCSTTCCCTTCHHHHHHHHT
T ss_pred CCEEEEEEEE----ceEEEEechHHHHHHHHHHHHHcCccCCCCCC---------CCCEecccccccCCCCHHHHHHHHH
Confidence 5899999999 5999999999999999999999985333 677 47775 6899999999999
Q ss_pred HHHHHHHHHHhcCCC--CCCcccccccccccc
Q 001141 754 LIQECLQSILHSSSF--SSPPNALITFLSQQE 783 (1142)
Q Consensus 754 ~LE~YLq~LL~h~~~--Ls~S~vL~eFLe~s~ 783 (1142)
+||.||+.|++|+.. ++.+.+|..||+...
T Consensus 84 ~Le~yL~~l~~~p~l~~~~~s~~l~~FL~~~~ 115 (117)
T 1kmd_A 84 GLERFLNELYNDRFDSRWRDTKIAQDFLQLSK 115 (117)
T ss_dssp THHHHHHHHHCCSSCCHHHHSHHHHHHTTCCC
T ss_pred HHHHHHHHHHhCcchhhhhcCHHHHHhcCCCC
Confidence 999999999998642 467899999999765
No 12
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1
Probab=99.69 E-value=1.3e-17 Score=162.41 Aligned_cols=93 Identities=19% Similarity=0.285 Sum_probs=80.9
Q ss_pred ccccEEEEEEEEeC-CceEEEEeecccHHHHHHHHHhhcccCC---------CCCCCCCcccccccccccCCCCHHHHHH
Q 001141 681 VKEYTVYKIRVWSG-KDQWEVERRYRDFYTLYRRLKSLSADEG---------WSLPSPWSSVEKESRKIFGNVSPLVVAH 750 (1142)
Q Consensus 681 vksYTVY~I~Vksg-~~eWtV~RRYSDF~~LHqrLke~fp~~~---------l~LP~~p~sV~K~PKKlfGn~speFIEe 750 (1142)
...|++|.|+|+.. +..|+|+|||+||.+||++|++.||... ++|| +|+++|+ +++|||+
T Consensus 34 ~~~~~vY~I~v~~~~~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~~~~~~~~lP~lP---------~K~~~~~-~~~~ie~ 103 (143)
T 1h6h_A 34 FTSHFVFVIEVKTKGGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLP---------AKVYVGV-KQEIAEM 103 (143)
T ss_dssp SSCEEEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHHSTTCSCGGGCCCCCCCC---------CCCCSSC-HHHHHHH
T ss_pred CCCeEEEEEEEEEcCCCEEEEEeeHHHHHHHHHHHHHHCccccccCCCCCCcccCC---------CCcccCc-CHHHHHH
Confidence 35899999999864 6899999999999999999999998532 3566 5888998 9999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcccccccccccc
Q 001141 751 RSVLIQECLQSILHSSSFSSPPNALITFLSQQE 783 (1142)
Q Consensus 751 RRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~s~ 783 (1142)
||++||.||+.|+.++..++.++++..||+...
T Consensus 104 Rr~~Le~yL~~ll~~p~~l~~s~~~~~Fl~~~~ 136 (143)
T 1h6h_A 104 RIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSP 136 (143)
T ss_dssp HHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCCH
T ss_pred HHHHHHHHHHHHHcCCHhhhcCHHHHHHhCCCc
Confidence 999999999999998655788999999998863
No 13
>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens}
Probab=99.69 E-value=1.9e-17 Score=160.39 Aligned_cols=90 Identities=26% Similarity=0.380 Sum_probs=78.3
Q ss_pred cccccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCcccccccccccCCCCHHHHHHHHHHHHHHH
Q 001141 680 GVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECL 759 (1142)
Q Consensus 680 GvksYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~~l~LP~~p~sV~K~PKKlfGn~speFIEeRRk~LE~YL 759 (1142)
+.+.||+|.|+|+.++..|+|+||||||.+||++|++.|+ .++|| +|+ +++++++|||+||++||.||
T Consensus 28 ~~~~~~~Y~I~v~~~~~~~~V~RRYSdF~~Lh~~L~~~~~--iP~lP---------~K~-~~~~~~~~ie~Rr~~Le~yL 95 (128)
T 2ett_A 28 PEKSHMVFRVEVLCSGRRHTVPRRYSEFHALHKRIKKLYK--VPDFP---------SKR-LPNWRTRGLEQRRQGLEAYI 95 (128)
T ss_dssp SSCCCCEEEEEEEETTEEEEEEEEHHHHHHHHHHHHTTSS--CCCCC---------CSS-CCCSSSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEEEECCcEEEEECCHHHHHHHHHHHHHHCC--CCCCC---------CCc-cCCCCHHHHHHHHHHHHHHH
Confidence 4578999999999998999999999999999999999875 23566 466 46899999999999999999
Q ss_pred HHHHhcCCCCCCcccccccccccc
Q 001141 760 QSILHSSSFSSPPNALITFLSQQE 783 (1142)
Q Consensus 760 q~LL~h~~~Ls~S~vL~eFLe~s~ 783 (1142)
+.|+.|+..+ +.+|..||+...
T Consensus 96 ~~ll~~p~~~--s~~l~~FL~~~~ 117 (128)
T 2ett_A 96 QGILYLNQEV--PKELLEFLRLRH 117 (128)
T ss_dssp HHHHHHSSSS--CHHHHHHHTCTT
T ss_pred HHHHhCchhc--CHHHHHhcCCcc
Confidence 9999987644 589999999764
No 14
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A
Probab=99.65 E-value=1.8e-16 Score=154.69 Aligned_cols=107 Identities=20% Similarity=0.242 Sum_probs=86.6
Q ss_pred ccceEEEeccccccCCcccccceecccccEEEEEEEEe-CCceEEEEeecccHHHHHHHHHhhcccCC---------C-C
Q 001141 656 RIDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWS-GKDQWEVERRYRDFYTLYRRLKSLSADEG---------W-S 724 (1142)
Q Consensus 656 ~Id~VEVv~~kqk~G~vS~servvGvksYTVY~I~Vks-g~~eWtV~RRYSDF~~LHqrLke~fp~~~---------l-~ 724 (1142)
.|..|.|++...+ +. ...|++|.|+|.. ++..|+|+|||+||.+||++|++.||... + .
T Consensus 5 ~i~~v~V~~~ek~-~~---------~~~~~~Y~I~V~~~~~~~~~V~RRYsdF~~Lh~~L~~~fp~~~g~~~~~~~~lP~ 74 (141)
T 1kq6_A 5 FIRHIALLGFEKR-FV---------PSQHYVYMFLVKWQDLSEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPH 74 (141)
T ss_dssp CEEEEEEEEEEEE-CS---------SSCEEEEEEEEEETTCCEEEEEECHHHHHHHHHHHHHHCTTTTTSSCGGGCCSCC
T ss_pred eEEEEEEccEEEe-cC---------CCCeEEEEEEEEEcCCCEEEEEecHHHHHHHHHHHHHHCchhhcccCccccccCC
Confidence 4667788775432 21 2467789999987 45789999999999999999999998642 2 4
Q ss_pred CCCCCcccccccccccCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccccc
Q 001141 725 LPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQE 783 (1142)
Q Consensus 725 LP~~p~sV~K~PKKlfGn~speFIEeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~s~ 783 (1142)
|| +|+++|+ .+|+|+||++||.||+.|+.++..++.++++..||+...
T Consensus 75 lP---------~K~~~~~--~~~~e~Rr~~Le~YL~~Ll~~p~~i~~s~~v~~Fl~~~~ 122 (141)
T 1kq6_A 75 LP---------APKWFDG--QRAAENRQGTLTEYCSTLMSLPTKISRCPHLLDFFKVRP 122 (141)
T ss_dssp CC---------CCCCCCS--HHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCCH
T ss_pred CC---------CccccCC--HHHHHHHHHHHHHHHHHHHhCCHhhcCChHHHHHhCCCc
Confidence 55 4778885 899999999999999999998766789999999998763
No 15
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=99.62 E-value=1.5e-16 Score=176.48 Aligned_cols=106 Identities=21% Similarity=0.340 Sum_probs=78.7
Q ss_pred eEEEeccccccCCcccccceecccccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhccc-CCC-CCCCCCccccccc
Q 001141 659 GVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSAD-EGW-SLPSPWSSVEKES 736 (1142)
Q Consensus 659 ~VEVv~~kqk~G~vS~servvGvksYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~-~~l-~LP~~p~sV~K~P 736 (1142)
.|.|..+.+. +. ..|+++||+|.|++++ ..|+|+||||||.|||+.|.+.||. ..+ +|| |
T Consensus 22 ~i~V~dp~k~-~~------~~g~~~y~~Y~I~~~~--~~~~V~RRYsdF~~L~~~L~~~~p~~~~iP~lP---------~ 83 (366)
T 3dyt_A 22 DCVVADPRKG-SK------MYGLKSYIEYQLTPTN--TNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLP---------D 83 (366)
T ss_dssp CEEEECGGGS-SS------CCCCCSSCEEEEEETT--CSCCEEEEHHHHHHHHHHHHHHHTTTSCCCCCC----------
T ss_pred EEEEcCceee-cC------CCCCcCeEEEEEEEec--CcEEEEeeHHHHHHHHHHHHHhCCCcCcCCCCc---------C
Confidence 4567665443 21 2377899999999864 6899999999999999999999987 543 566 6
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccccc
Q 001141 737 RKIFGNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQE 783 (1142)
Q Consensus 737 KKlfGn~speFIEeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~s~ 783 (1142)
|+++|+++++||++||++||.||++|+.|| .++.++.|+.||+.++
T Consensus 84 K~~~g~~~~~fie~Rr~~Le~fL~~i~~~p-~l~~~~~~~~FL~~~~ 129 (366)
T 3dyt_A 84 KQVTGRFEEEFIKMRMERLQAWMTRMCRHP-VISESEVFQQFLNFRD 129 (366)
T ss_dssp ----------CHHHHHHHHHHHHHHHHTCT-TGGGSHHHHHHHHCSS
T ss_pred CcccCCCCHHHHHHHHHHHHHHHHHHhCCH-hhhCCcHHHHhhCCCc
Confidence 899999999999999999999999999985 5789999999999853
No 16
>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens}
Probab=99.62 E-value=1.3e-16 Score=155.66 Aligned_cols=111 Identities=22% Similarity=0.262 Sum_probs=83.8
Q ss_pred CccccceEEEeccccccCCcccccceecccccEEEEEEEEeCC--ceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCC
Q 001141 653 VPLRIDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGK--DQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPW 729 (1142)
Q Consensus 653 ~~~~Id~VEVv~~kqk~G~vS~servvGvksYTVY~I~Vksg~--~eWtV~RRYSDF~~LHqrLke~fp~~~-l~LP~~p 729 (1142)
....|..|.|.+..++.. + ..|++|.|+|...+ ..|.|+|||+||.+||++|++.||... ++||
T Consensus 16 ~~~~i~~v~I~~~ek~~~---------~-~k~~~Y~I~V~~~~~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP--- 82 (140)
T 2iwl_X 16 QDGRIKEVSVFTYHKKYN---------P-DKHYIYVVRILREGQIEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFP--- 82 (140)
T ss_dssp HHCCEEEEEEEEEEECCS---------S-SSCEEEEEEEEETTCSSCEEEEECHHHHHHHHHHHHHHSCGGGSCCCC---
T ss_pred CCCeeEEEEECcEEEEec---------C-CCeEEEEEEEEECCCceeEEEEeEHHHHHHHHHHHHHHCcCccCCCCC---
Confidence 344677888887654321 2 35667999998865 489999999999999999999999754 3777
Q ss_pred cccccccccccCCC-CHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccc
Q 001141 730 SSVEKESRKIFGNV-SPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQ 782 (1142)
Q Consensus 730 ~sV~K~PKKlfGn~-speFIEeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~s 782 (1142)
+|+++|++ +.+|+|+||++||.||+.|+++++.++.++.+..||+..
T Consensus 83 ------~K~~~~~~~~~~~~e~Rr~~Le~yL~~Ll~~~~~i~~s~~v~~Fl~~~ 130 (140)
T 2iwl_X 83 ------NRMVLGRTHIKDVAAKRKIELNSYLQSLMNASTDVAECDLVCTFFHPL 130 (140)
T ss_dssp ------C----------CCCCHHHHHHHHHHHHHTTSCHHHHTSHHHHHHHSCC
T ss_pred ------CCeecCccchHHHHHHHHHHHHHHHHHHHhCCHhhhcCHHHHHHhCCC
Confidence 58888875 677999999999999999999777789999999999874
No 17
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=99.60 E-value=1.5e-16 Score=178.20 Aligned_cols=106 Identities=22% Similarity=0.275 Sum_probs=76.4
Q ss_pred eEEEeccccccCCcccccceecccccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccCCC-CCCCCCcccccccc
Q 001141 659 GVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSVEKESR 737 (1142)
Q Consensus 659 ~VEVv~~kqk~G~vS~servvGvksYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~~l-~LP~~p~sV~K~PK 737 (1142)
.|.|..+.+... ..|+++||+|.|++++ ..|+|+||||||.|||++|.+.||...+ +|| ||
T Consensus 43 ~i~V~dp~k~~~-------~~g~~~y~~Y~I~~~~--~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP---------~K 104 (386)
T 4akv_A 43 ACSVEDPTKQTK-------FKGIKSYISYKLTPTH--AASPVYRRYKHFDWLYNRLLHKFTVISVPHLP---------EK 104 (386)
T ss_dssp CEEEECC-------------------CCEEEEETT--SSSCEEECHHHHHHHHHHHHHHCSSSCCCCCC---------CC
T ss_pred EEEEcCceEecC-------CCCCcCeEEEEEEEEe--CCeEEEcCHHHHHHHHHHHHHhCCCCCCCCCC---------CC
Confidence 456666544321 1377899999999865 5799999999999999999999987653 566 69
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccccc
Q 001141 738 KIFGNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQE 783 (1142)
Q Consensus 738 KlfGn~speFIEeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~s~ 783 (1142)
+++|+++++|||+||++||.||++|+.|| .++.++.|+.||+.++
T Consensus 105 ~~~g~~~~~fie~Rr~~Le~fL~~i~~~p-~l~~s~~~~~FL~~~~ 149 (386)
T 4akv_A 105 QATGRFEEDFIEKRKRRLILWMDHMTSHP-VLSQYEGFQHFLSCLD 149 (386)
T ss_dssp C------CCTTTHHHHHHHHHHHHHHTCT-TGGGCHHHHHHHSCCC
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHhCCH-hhhCCcHHHHHhCCCC
Confidence 99999999999999999999999999975 5789999999999863
No 18
>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A
Probab=99.57 E-value=2.6e-15 Score=151.21 Aligned_cols=104 Identities=15% Similarity=0.147 Sum_probs=81.1
Q ss_pred cceEEEeccccccCCcccccceecccccEEEEEEEEeC-----CceEEEEeecccHHHHHHHHHh--hcccCCC-CCCCC
Q 001141 657 IDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKS--LSADEGW-SLPSP 728 (1142)
Q Consensus 657 Id~VEVv~~kqk~G~vS~servvGvksYTVY~I~Vksg-----~~eWtV~RRYSDF~~LHqrLke--~fp~~~l-~LP~~ 728 (1142)
...|+|..+... ..||+|.|++++. ...|+|+|||+||.|||+.|.+ .||...+ +||
T Consensus 11 ~l~i~V~dp~~~-------------~~~v~Y~I~t~t~~p~f~~~~~~V~RRysdF~~L~~~L~~~~~~p~~iiPplP-- 75 (161)
T 3hpc_X 11 SLQIDIPDALSE-------------RDKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAP-- 75 (161)
T ss_dssp SEEEEEEEEEEE-------------TTEEEEEEEEEECCTTSSSSEEEEEECHHHHHHHHHHHHHCGGGTTSCCCCCC--
T ss_pred eEEEEECCCeEe-------------cCCEEEEEEEEeCCcccCCCcceEEecHHHHHHHHHHHHhhccCCccccCCCC--
Confidence 445677766432 2499999999984 4689999999999999999998 6776543 566
Q ss_pred CcccccccccccC--------------C------------CCHHHHHHHH---HHHHHHHHHHHhcCCCCCCcccccccc
Q 001141 729 WSSVEKESRKIFG--------------N------------VSPLVVAHRS---VLIQECLQSILHSSSFSSPPNALITFL 779 (1142)
Q Consensus 729 p~sV~K~PKKlfG--------------n------------~speFIEeRR---k~LE~YLq~LL~h~~~Ls~S~vL~eFL 779 (1142)
+|++++ + ++++|||+|| ++||.||++|++|| .++.++.|+.||
T Consensus 76 -------~K~~~~~~~~K~~~~g~~~~~~~~e~~~~~r~~~~~efie~Rrkrr~~Le~FL~ri~~HP-~L~~d~~~~~FL 147 (161)
T 3hpc_X 76 -------TKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHP-VLSKDRNFHVFL 147 (161)
T ss_dssp -------CCCCCHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST-TGGGCHHHHHHH
T ss_pred -------CcccccchhhhhhcccccccccchhHhhhhcccccHHHHHHHHHHHHHHHHHHHHHHcCC-CcccCcHHHhhc
Confidence 466553 2 3578999754 45999999999985 679999999999
Q ss_pred cccc
Q 001141 780 SQQE 783 (1142)
Q Consensus 780 e~s~ 783 (1142)
+.+.
T Consensus 148 ~~~~ 151 (161)
T 3hpc_X 148 EYDQ 151 (161)
T ss_dssp HCCS
T ss_pred CCCc
Confidence 9875
No 19
>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens}
Probab=99.52 E-value=9.3e-15 Score=145.19 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=87.5
Q ss_pred cceEEEeccccccCCcccccceecccccEEEEEEEEe-CCceEEEEeecccHHHHHHHHHhhcccCC----------CCC
Q 001141 657 IDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWS-GKDQWEVERRYRDFYTLYRRLKSLSADEG----------WSL 725 (1142)
Q Consensus 657 Id~VEVv~~kqk~G~vS~servvGvksYTVY~I~Vks-g~~eWtV~RRYSDF~~LHqrLke~fp~~~----------l~L 725 (1142)
+..|.|.+... +..+.+.|++|.|+|.. ++..|+|+|||+||.+||++|++.||... ..|
T Consensus 8 ~~~v~v~~~ek---------~~~~~~~y~~Y~I~V~~~d~~~~~V~RRYseF~~Lh~~L~~~FP~e~~~~~~~~r~lP~l 78 (149)
T 2l73_A 8 GPRYPVSVQGA---------ALVQIKRLQTFAFSVRWSDGSDTFVRRSWDEFRQLKKTLKETFPVEAGLLRRSDRVLPKL 78 (149)
T ss_dssp CCCCEEEEEEE---------EEECCSSSCEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHCGGGGSSSCSSCCSSCCC
T ss_pred eeEEEEEeeeE---------eecCCCceEEEEEEEEEeCCCEEEEEEehHHHHHHHHHHHHHCchhhcccccccccccCC
Confidence 44566666433 23456789999999985 46789999999999999999999998521 145
Q ss_pred CCCCcccccccccccCC-CCHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccccc
Q 001141 726 PSPWSSVEKESRKIFGN-VSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQE 783 (1142)
Q Consensus 726 P~~p~sV~K~PKKlfGn-~speFIEeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~s~ 783 (1142)
| +|+++|+ .+.+++++|+.+||.||+.|+..+..++.++++..||....
T Consensus 79 P---------~k~~~~~~~~~~~~e~R~~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~~ 128 (149)
T 2l73_A 79 L---------DAPLLGRVGRTSRGLARLQLLETYSRRLLATAERVARSPTITGFFAPQP 128 (149)
T ss_dssp C---------CCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHSHHHHHHHSCCG
T ss_pred C---------CCeeeccccchHHHHHHHHHHHHHHHHHHhCCccccCCHHHHHHhCCCc
Confidence 5 4778876 46789999999999999999997776788999999998864
No 20
>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A
Probab=99.48 E-value=4.4e-14 Score=141.33 Aligned_cols=93 Identities=13% Similarity=0.154 Sum_probs=74.8
Q ss_pred ccEEEEEEEEe-CCceEEEEeecccHHHHHHHHHhhcccCC------------CCCCCCCcccccccccccCCCCHHHHH
Q 001141 683 EYTVYKIRVWS-GKDQWEVERRYRDFYTLYRRLKSLSADEG------------WSLPSPWSSVEKESRKIFGNVSPLVVA 749 (1142)
Q Consensus 683 sYTVY~I~Vks-g~~eWtV~RRYSDF~~LHqrLke~fp~~~------------l~LP~~p~sV~K~PKKlfGn~speFIE 749 (1142)
.+++|.|+|.. ++..|.|+|||+||.+||.+|++.||... ..||. .|+|.+.+ +.+|+|
T Consensus 31 ~~y~Y~I~V~~~d~~~~~V~RRYsdF~~Lh~~L~~~fP~e~g~~~~~~g~~~~~~lP~-------LP~K~~~~-~~~~~e 102 (156)
T 2v6v_A 31 EKYWFLVCCELSNGKTRQLKRYYQDFYDLQVQLLDAFPAEAGKLRDAGGQWSKRIMPY-------IPGPVPYV-TNSITK 102 (156)
T ss_dssp TEEEEEEEEEETTSCEEEEEECHHHHHHHHHHHHHHCTTTTTCCBCTTCCBCCCCSCC-------CCCCCSSC-CHHHHH
T ss_pred CEEEEEEEEEEcCCCEEEEEEEhHHHHHHHHHHHHHcchhhcccccccccccccccCC-------CCCCcccC-CHHHHH
Confidence 35569999998 46799999999999999999999997521 22342 23343333 679999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcccccccccccc
Q 001141 750 HRSVLIQECLQSILHSSSFSSPPNALITFLSQQE 783 (1142)
Q Consensus 750 eRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~s~ 783 (1142)
+||.+||.||+.|+..++.++.+++|+.||+...
T Consensus 103 ~Rr~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~~ 136 (156)
T 2v6v_A 103 KRKEDLNIYVADLVNLPDYISRSEMVHSLFVVLN 136 (156)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHTSHHHHHTTSCCS
T ss_pred HHHHHHHHHHHHHHhCCccccCCHHHHHHhCCCC
Confidence 9999999999999997777899999999998853
No 21
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Probab=99.29 E-value=2.2e-12 Score=141.73 Aligned_cols=91 Identities=21% Similarity=0.320 Sum_probs=77.3
Q ss_pred cccEEEEEEEEe-CCceEEEEeecccHHHHHHHHHhhcccCC---------CCCCCCCcccccccccccCCCCHHHHHHH
Q 001141 682 KEYTVYKIRVWS-GKDQWEVERRYRDFYTLYRRLKSLSADEG---------WSLPSPWSSVEKESRKIFGNVSPLVVAHR 751 (1142)
Q Consensus 682 ksYTVY~I~Vks-g~~eWtV~RRYSDF~~LHqrLke~fp~~~---------l~LP~~p~sV~K~PKKlfGn~speFIEeR 751 (1142)
..|++|.|+|.. ++..|.|+|||+||.+||++|++.||... ..|| +|+++|+ ..+|+++|
T Consensus 38 ~~~~~Y~i~v~~~~~~~~~v~RrYsdF~~Lh~~L~~~fp~e~g~~~~~~~lp~lP---------~k~~~~~-~~~~~e~R 107 (341)
T 2dyb_A 38 TSHFVFVIEVKTKGGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALAXTLPTLP---------AKVYVGV-KQEIAEMR 107 (341)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHTCC---------CCCCCC---------CCCCCSC-HHHHHHHH
T ss_pred CcEEEEEEEEEEcCCcEEEEEeehHHHHHHHHHHHHHCchhhccccccccccCCC---------CccccCc-cHHHHHHH
Confidence 468999999985 56789999999999999999999998533 2555 4777877 67899999
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccccc
Q 001141 752 SVLIQECLQSILHSSSFSSPPNALITFLSQQ 782 (1142)
Q Consensus 752 Rk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~s 782 (1142)
++.|+.||++|+.++..++.++.+..||...
T Consensus 108 ~~~Le~yl~~ll~lp~~i~~~~~v~~Ff~~~ 138 (341)
T 2dyb_A 108 IPALNAYMKSLLSLPVWVLMDEDVRIFFYQS 138 (341)
T ss_dssp HHHHHHHHHHHHHSCHHHHTCHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHhhc
Confidence 9999999999999877678888999999765
No 22
>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens}
Probab=99.24 E-value=4.5e-12 Score=123.63 Aligned_cols=105 Identities=16% Similarity=0.219 Sum_probs=82.0
Q ss_pred CCccccceEEEeccccccCCcccccceecccccEEEEEEEEeC-CceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCC
Q 001141 652 LVPLRIDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSG-KDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPW 729 (1142)
Q Consensus 652 ~~~~~Id~VEVv~~kqk~G~vS~servvGvksYTVY~I~Vksg-~~eWtV~RRYSDF~~LHqrLke~fp~~~-l~LP~~p 729 (1142)
.....|..+.|.+-.++ ....|.|+|... +..|.|+|||++|..||++|++.||... +.||
T Consensus 20 ~~~~~i~~~~v~~~~k~--------------~~~~Yvi~V~~sd~~~~~~~rry~eF~~LH~qLkk~Fp~~~LP~fP--- 82 (127)
T 2wwe_A 20 FQSMSIERATILGFSKK--------------SSNLYLIQVTHSNNETSLTEKSFEQFSKLHSQLQKQFASLTLPEFP--- 82 (127)
T ss_dssp SCSSSEEEEEEEEEETT--------------EEEEEEEEEEETTSCEEEEEECHHHHHHHHHHHHHHTTTSCCCCCC---
T ss_pred ecCCcEEEEEEEEEEec--------------ccEEEEEEEEEeCCCeEEEEEEHHHHHHHHHHHHHhCccccCCCCC---
Confidence 34445667777775332 335599999874 6799999999999999999999999863 3666
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccc
Q 001141 730 SSVEKESRKIFGNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (1142)
Q Consensus 730 ~sV~K~PKKlfGn~speFIEeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~ 781 (1142)
+|++++. ...-++ ||++||.||+.|++.++.+++++.+..||..
T Consensus 83 ------~K~ll~~-t~~~~e-Rr~~Le~Ylq~Ll~~~~~Ia~Sd~v~~Ff~~ 126 (127)
T 2wwe_A 83 ------HWWHLPF-TNSDHR-RFRDLNHYMEQILNVSHEVTNSDCVLSFFLS 126 (127)
T ss_dssp ------CTTSHHH-HHCHHH-HHHHHHHHHHHHTTSCHHHHTSHHHHHHHHC
T ss_pred ------CccccCc-CHHHHH-HHHHHHHHHHHHhcCCceeecCHHHHHHhCC
Confidence 4676654 333455 9999999999999977888999999999864
No 23
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.53 E-value=0.22 Score=44.63 Aligned_cols=39 Identities=26% Similarity=0.676 Sum_probs=28.8
Q ss_pred cccccccCCCCCCCeeeccCCCceeecccccceechhhhcC----C--CCCCchhh
Q 001141 1021 VPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKK----L--TSCSCGTS 1070 (1142)
Q Consensus 1021 FICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k----~--~~CPkCaR 1070 (1142)
..|. ||.+ +|.| -.+|..|+..||..|+.+ . ..||-|..
T Consensus 16 ~~C~---IC~~---~i~~-----g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~ 60 (74)
T 2ct0_A 16 KICN---ICHS---LLIQ-----GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCND 60 (74)
T ss_dssp CBCS---SSCC---BCSS-----SEECSSSCCEECHHHHHHHSTTCSSCCCTTTCS
T ss_pred CcCc---chhh---Hccc-----CCccCCCCchhhHHHHHHHHHhcCCCCCCCCcC
Confidence 4576 7884 4543 248999999999999852 2 58999863
No 24
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=87.61 E-value=0.18 Score=53.70 Aligned_cols=82 Identities=20% Similarity=0.422 Sum_probs=48.2
Q ss_pred hHHHHhhcCCCCccccCCccccHhHHhhccCCCCcchhHHHHHHHHHHhhhhcccccccccCccccccccCCCCCCCeee
Q 001141 958 RRSINKGLGSRRYLLESNDFFALRDLIDLSKGPFAALPAMVETVSKKILVHITEQCLICCDVGVPCCARQACDDPSSLIF 1037 (1142)
Q Consensus 958 a~sL~k~L~~R~HLLEd~dlYSL~DLidV~sG~L~~Lp~lLe~l~~~~~~HI~~~CeLCq~KGFICE~~qiC~d~~dIIF 1037 (1142)
++.+++.|-...||......|+|. .+.| -.+...+..... +.-..|. +|++ +|.
T Consensus 138 ae~lL~~lv~~gWl~~~~g~~~l~------~R~l-------~El~~~l~~~~~-------~~i~~C~---iC~~---iv~ 191 (238)
T 3nw0_A 138 AEQVLQKFVQNKWLIEKEGEFTLH------GRAI-------LEMEQYIRETYP-------DAVKICN---ICHS---LLI 191 (238)
T ss_dssp HHHHHHHHHHTTSEEEETTEEEEC------HHHH-------HHHHHHHHHHCT-------TTCCBCT---TTCS---BCS
T ss_pred HHHHHHHHHHhcchhhhCCEEEec------CccH-------HHHHHHHHHhcC-------CCCCcCc---chhh---HHh
Confidence 345555555567777655555532 1221 122233333321 1234576 7874 566
Q ss_pred ccCCCceeecccccceechhhhcC------CCCCCchhh
Q 001141 1038 TFQEGEVERCKSCEAVFHKPCFKK------LTSCSCGTS 1070 (1142)
Q Consensus 1038 PFq~~~t~rC~~C~SVFHk~Cf~k------~~~CPkCaR 1070 (1142)
| -.+|+.|+..||..|+.+ ...||.|..
T Consensus 192 ~-----g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~ 225 (238)
T 3nw0_A 192 Q-----GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCND 225 (238)
T ss_dssp S-----CEECSSSCCEECHHHHHHHTTTCSSCBCTTTCC
T ss_pred C-----CcccCccChHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 3 258999999999999843 248999975
No 25
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=64.48 E-value=4.4 Score=37.70 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=23.4
Q ss_pred CCceeecccccceechhhhcC-------CCCCCchhh
Q 001141 1041 EGEVERCKSCEAVFHKPCFKK-------LTSCSCGTS 1070 (1142)
Q Consensus 1041 ~~~t~rC~~C~SVFHk~Cf~k-------~~~CPkCaR 1070 (1142)
......|..|...||..|... .-.||.|..
T Consensus 39 ~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 39 DGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp SSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 345679999999999999842 138999963
No 26
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.72 E-value=3.1 Score=35.65 Aligned_cols=27 Identities=26% Similarity=0.588 Sum_probs=20.3
Q ss_pred ceeecccccceechhhhcC----CCCCCchh
Q 001141 1043 EVERCKSCEAVFHKPCFKK----LTSCSCGT 1069 (1142)
Q Consensus 1043 ~t~rC~~C~SVFHk~Cf~k----~~~CPkCa 1069 (1142)
...+...|+-+||..|..+ ...||-|.
T Consensus 37 ~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr 67 (75)
T 1x4j_A 37 QLLRVLPCNHEFHAKCVDKWLKANRTCPICR 67 (75)
T ss_dssp CEEEEETTTEEEETTHHHHHHHHCSSCTTTC
T ss_pred CeEEEECCCCHhHHHHHHHHHHcCCcCcCcC
Confidence 3445566999999999742 46899885
No 27
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=59.46 E-value=3.2 Score=35.90 Aligned_cols=40 Identities=30% Similarity=0.681 Sum_probs=28.5
Q ss_pred cccccccCCCCCCCeeeccCCCceeecccccceechhhhcC--------CCCCCchhhhh
Q 001141 1021 VPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKK--------LTSCSCGTSLV 1072 (1142)
Q Consensus 1021 FICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k--------~~~CPkCaRlr 1072 (1142)
..|. +|.+. .....|..|...||..|... .=.||.|..-+
T Consensus 9 ~~C~---vC~~~---------g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 9 DECA---VCRDG---------GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp CSBS---SSSCC---------SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCc---cCCCC---------CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 4576 68753 23568999999999999962 11699886443
No 28
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=58.51 E-value=8.8 Score=36.36 Aligned_cols=51 Identities=25% Similarity=0.610 Sum_probs=36.5
Q ss_pred ccccccccCccccccccCCCCCCCeeeccCCCceeecccccceechhhhcCC--------CCCCchhhhhHH
Q 001141 1011 EQCLICCDVGVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKL--------TSCSCGTSLVVE 1074 (1142)
Q Consensus 1011 ~~CeLCq~KGFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k~--------~~CPkCaRlr~~ 1074 (1142)
-.|..|. .|. +|.... +......|..|...||..|.... =.||.|.....+
T Consensus 53 W~C~~C~----~C~---~C~~~~------~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 111 (114)
T 2kwj_A 53 WQCIECK----SCI---LCGTSE------NDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKE 111 (114)
T ss_dssp CCCGGGC----CCT---TTTCCT------TTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHH
T ss_pred cCccccC----ccC---cccccC------CCCceEEcCCCCccccccccCCCccCCCCCCeECccccchhhc
Confidence 3688774 576 788632 23567899999999999999621 159988765544
No 29
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=57.95 E-value=8.1 Score=32.67 Aligned_cols=43 Identities=21% Similarity=0.623 Sum_probs=30.5
Q ss_pred ccccccccCCCCCCCeeeccCCCceeecccccceechhhhcC--------CCCCCchhhhhHH
Q 001141 1020 GVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKK--------LTSCSCGTSLVVE 1074 (1142)
Q Consensus 1020 GFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k--------~~~CPkCaRlr~~ 1074 (1142)
...|. +|.+. .....|..|...||..|... .=.||.|...+..
T Consensus 5 ~~~C~---vC~~~---------g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~ 55 (60)
T 2puy_A 5 EDFCS---VCRKS---------GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLK 55 (60)
T ss_dssp CSSCT---TTCCC---------SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHH
T ss_pred CCCCc---CCCCC---------CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhc
Confidence 34576 68753 24568999999999999962 1269999765543
No 30
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=57.57 E-value=5 Score=36.71 Aligned_cols=30 Identities=23% Similarity=0.647 Sum_probs=22.8
Q ss_pred ceeecccccceechhhhcCC------------CCCCchhhhh
Q 001141 1043 EVERCKSCEAVFHKPCFKKL------------TSCSCGTSLV 1072 (1142)
Q Consensus 1043 ~t~rC~~C~SVFHk~Cf~k~------------~~CPkCaRlr 1072 (1142)
....|..|...||..|+.-. =.|+.|....
T Consensus 32 ~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 32 QLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred ceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 45679999999999999521 2799887543
No 31
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=57.21 E-value=3.3 Score=34.64 Aligned_cols=46 Identities=24% Similarity=0.521 Sum_probs=30.3
Q ss_pred ccccccccCCCCCCCeeeccCCCceeecccccceechhhhc----CCCCCCchhh
Q 001141 1020 GVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFK----KLTSCSCGTS 1070 (1142)
Q Consensus 1020 GFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~----k~~~CPkCaR 1070 (1142)
.+.|. ||.+ .+.-|.+.........|+-+||+.|+. ....||-|..
T Consensus 10 ~~~C~---IC~~--~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~ 59 (71)
T 3ng2_A 10 TVSCP---ICMD--GYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRK 59 (71)
T ss_dssp CCBCT---TTCC--BHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCC
T ss_pred CCCCc---ccCh--hhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCC
Confidence 45666 6774 233344434445677899999999984 2468998853
No 32
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=57.13 E-value=7.1 Score=31.70 Aligned_cols=37 Identities=30% Similarity=0.681 Sum_probs=27.5
Q ss_pred CccccccccCCCCCCCeeeccCCCceeecccccceechhhhcCC-CCCC
Q 001141 1019 VGVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKL-TSCS 1066 (1142)
Q Consensus 1019 KGFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k~-~~CP 1066 (1142)
+...|. .|.. +|+ .-.+|..|+-..|+.|..+. ..|+
T Consensus 13 ~pt~C~---~C~~---~l~-----qG~~C~~C~~~~H~~C~~~v~~~C~ 50 (52)
T 1faq_A 13 KLAFCD---ICQK---FLL-----NGFRCQTCGYKFHEHCSTKVPTMCV 50 (52)
T ss_dssp SCEECT---TSSS---EEC-----SEEECTTTTCCBCSTTSSSSSSCCC
T ss_pred CCcCCC---Cccc---ccc-----cCCEeCCCCCeEChhHHhhCcCcCC
Confidence 345687 7874 676 35799999999999998764 3453
No 33
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=56.66 E-value=6.9 Score=34.70 Aligned_cols=46 Identities=17% Similarity=0.393 Sum_probs=30.7
Q ss_pred cccccccCCCCCCCeeeccCCCceeecccccceechhhhcCC------CCCCchhhhhH
Q 001141 1021 VPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKL------TSCSCGTSLVV 1073 (1142)
Q Consensus 1021 FICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k~------~~CPkCaRlr~ 1073 (1142)
..|. +|.+.. ..+.+....|..|...||..|+.-. =.||.|..-+.
T Consensus 17 ~~C~---vC~~~~----s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~~~ 68 (71)
T 2ku3_A 17 AVCS---ICMDGE----SQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 68 (71)
T ss_dssp CSCS---SSCCCC----CCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHHHH
T ss_pred CCCC---CCCCCC----CCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCcCc
Confidence 4565 676531 1133456789999999999999521 27998876543
No 34
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=56.56 E-value=7.1 Score=33.43 Aligned_cols=22 Identities=27% Similarity=0.759 Sum_probs=17.4
Q ss_pred cccceechhhhc----CCCCCCchhh
Q 001141 1049 SCEAVFHKPCFK----KLTSCSCGTS 1070 (1142)
Q Consensus 1049 ~C~SVFHk~Cf~----k~~~CPkCaR 1070 (1142)
.|+-+||+.|+. ....||-|..
T Consensus 35 ~C~H~fc~~Ci~~~~~~~~~CP~Cr~ 60 (78)
T 2ect_A 35 PCNHLFHDSCIVPWLEQHDSCPVCRK 60 (78)
T ss_dssp TTSCEEETTTTHHHHTTTCSCTTTCC
T ss_pred CCCCeecHHHHHHHHHcCCcCcCcCC
Confidence 599999999985 3468998853
No 35
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=55.64 E-value=2.8 Score=34.16 Aligned_cols=46 Identities=24% Similarity=0.502 Sum_probs=29.3
Q ss_pred ccccccccCCCCCCCeeeccCCCceeecccccceechhhhcC----CCCCCchhh
Q 001141 1020 GVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKK----LTSCSCGTS 1070 (1142)
Q Consensus 1020 GFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k----~~~CPkCaR 1070 (1142)
.+.|. ||.+ .+.-|.+.........|+-+||+.|+.+ ...||-|..
T Consensus 3 ~~~C~---IC~~--~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~ 52 (64)
T 2xeu_A 3 MVSCP---ICMD--GYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRK 52 (64)
T ss_dssp CCBCT---TTCC--BHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCC
T ss_pred CCCCC---ccCh--hhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCc
Confidence 45676 6874 2333332223335668999999999852 458998854
No 36
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=55.50 E-value=10 Score=33.67 Aligned_cols=41 Identities=24% Similarity=0.784 Sum_probs=30.8
Q ss_pred CccccccccCCCCCCCeeeccCCCceeecccccceechhhhcCC-CCCC
Q 001141 1019 VGVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKL-TSCS 1066 (1142)
Q Consensus 1019 KGFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k~-~~CP 1066 (1142)
+-..|. .|.+ +|+-+- ..-.+|..|+-..|+.|..+. ..|+
T Consensus 33 ~pt~C~---~C~~---~lwGl~-kqG~~C~~C~~~~Hk~C~~~v~~~C~ 74 (77)
T 2enn_A 33 QPTFCS---VCHE---FVWGLN-KQGYQCRQCNAAIHKKCIDKVIAKCT 74 (77)
T ss_dssp SCEECS---SSCC---EECCTT-CCEEECSSSCCEEESGGGSSCCSCCC
T ss_pred CCcCcc---ccCh---hhcccc-ccccCcCCCCCcCCHhHHhhCcCCCC
Confidence 456787 7874 787653 356799999999999999765 4565
No 37
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=55.16 E-value=5.6 Score=33.27 Aligned_cols=24 Identities=25% Similarity=0.603 Sum_probs=18.5
Q ss_pred ecccccceechhhhcC----CCCCCchh
Q 001141 1046 RCKSCEAVFHKPCFKK----LTSCSCGT 1069 (1142)
Q Consensus 1046 rC~~C~SVFHk~Cf~k----~~~CPkCa 1069 (1142)
+...|+-+||+.|+.+ ...||-|.
T Consensus 31 ~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr 58 (69)
T 2kiz_A 31 RRLPCMHLFHQVCVDQWLITNKKCPICR 58 (69)
T ss_dssp EECTTSCEEEHHHHHHHHHHCSBCTTTC
T ss_pred EEeCCCCHHHHHHHHHHHHcCCCCcCcC
Confidence 4456999999999852 45799885
No 38
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.94 E-value=9.2 Score=34.32 Aligned_cols=41 Identities=27% Similarity=0.802 Sum_probs=30.3
Q ss_pred CccccccccCCCCCCCeeeccCCCceeecccccceechhhhcCC-CCCC
Q 001141 1019 VGVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKL-TSCS 1066 (1142)
Q Consensus 1019 KGFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k~-~~CP 1066 (1142)
+-..|. .|.. +|+-+- ..-.+|..|+-.+|+.|..+. ..|+
T Consensus 27 ~pt~C~---~C~~---~lwGl~-kqg~~C~~C~~~~Hk~C~~~v~~~C~ 68 (83)
T 2yuu_A 27 QPTFCS---VCKD---FVWGLN-KQGYKCRQCNAAIHKKCIDKIIGRCT 68 (83)
T ss_dssp SCCCCS---SSCC---CCCSSS-CCEEEETTTCCEECTTGGGTCCSCCS
T ss_pred CCcChh---hcCh---hhcccc-ccccccCCcCCeeChhhhhhCCCcCC
Confidence 456787 7874 676543 356899999999999999764 4554
No 39
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=54.53 E-value=9.5 Score=30.38 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=20.5
Q ss_pred eeecccccceechhhhcC----CCCCCchhh
Q 001141 1044 VERCKSCEAVFHKPCFKK----LTSCSCGTS 1070 (1142)
Q Consensus 1044 t~rC~~C~SVFHk~Cf~k----~~~CPkCaR 1070 (1142)
+...+.|+-+||+.|..+ ...||-|.+
T Consensus 21 ~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~ 51 (55)
T 1iym_A 21 ARFLPRCGHGFHAECVDMWLGSHSTCPLCRL 51 (55)
T ss_dssp CEECSSSCCEECTTHHHHTTTTCCSCSSSCC
T ss_pred eEECCCCCCcccHHHHHHHHHcCCcCcCCCC
Confidence 445667999999999853 468998853
No 40
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=54.04 E-value=11 Score=32.25 Aligned_cols=39 Identities=26% Similarity=0.601 Sum_probs=28.3
Q ss_pred ccccccccCCCCCCCeeeccCCCceeecccccceechhhhcCC--------CCCCchhh
Q 001141 1020 GVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKL--------TSCSCGTS 1070 (1142)
Q Consensus 1020 GFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k~--------~~CPkCaR 1070 (1142)
...|. +|.+. .....|..|...||..|.... =.||.|..
T Consensus 11 ~~~C~---vC~~~---------g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 11 QDYCE---VCQQG---------GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CSSCT---TTSCC---------SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCc---cCCCC---------CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 34566 68752 246689999999999998531 27998864
No 41
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=52.60 E-value=6.6 Score=32.76 Aligned_cols=34 Identities=26% Similarity=0.684 Sum_probs=25.4
Q ss_pred cccccccCCCCCCCeeeccCCCceeecccccceechhhhcCCCCC
Q 001141 1021 VPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKLTSC 1065 (1142)
Q Consensus 1021 FICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k~~~C 1065 (1142)
..|. .|.. .|| + -.+|..|+..+|+.|..+.-.|
T Consensus 15 t~C~---~C~k---~i~--~---G~kC~~Ck~~cH~kC~~~vp~c 48 (49)
T 1kbe_A 15 QVCN---VCQK---SMI--F---GVKCKHCRLKCHNKCTKEAPAC 48 (49)
T ss_dssp CCCS---SSCC---SSC--C---EEEETTTTEEESSSCTTTSCCC
T ss_pred cCcc---ccCc---eeE--C---cCCCCCCCCccchhhcCcCCCC
Confidence 4576 7874 575 3 2699999999999998765444
No 42
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.69 E-value=15 Score=32.98 Aligned_cols=43 Identities=19% Similarity=0.578 Sum_probs=29.0
Q ss_pred cccccccCc-cccc--cccCCCCCCCeeeccCCCceeecccccceechhhhc
Q 001141 1012 QCLICCDVG-VPCC--ARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFK 1060 (1142)
Q Consensus 1012 ~CeLCq~KG-FICE--~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~ 1060 (1142)
.|..|.++. ..|. ...+|.... +......|..|...||..|..
T Consensus 12 ~c~~C~~~~~w~C~~c~C~vC~~~~------~~~~ll~CD~C~~~yH~~Cl~ 57 (77)
T 2e6s_A 12 ECDLCGGDPEKKCHSCSCRVCGGKH------EPNMQLLCDECNVAYHIYCLN 57 (77)
T ss_dssp CCTTTCSCSSSCCSSSSCSSSCCCC------CSTTEEECSSSCCEEETTSSS
T ss_pred cChhhcCCCCeECCCCCCcCcCCcC------CCCCEEEcCCCCccccccccC
Confidence 578887655 2221 223788532 235677899999999999996
No 43
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=51.54 E-value=10 Score=39.10 Aligned_cols=48 Identities=21% Similarity=0.449 Sum_probs=32.1
Q ss_pred CccccccccCCCCCCCeeeccCC--CceeecccccceechhhhcC---------------CCCCCchhhhhH
Q 001141 1019 VGVPCCARQACDDPSSLIFTFQE--GEVERCKSCEAVFHKPCFKK---------------LTSCSCGTSLVV 1073 (1142)
Q Consensus 1019 KGFICE~~qiC~d~~dIIFPFq~--~~t~rC~~C~SVFHk~Cf~k---------------~~~CPkCaRlr~ 1073 (1142)
+|..|- +|.. .|.=+. ..-.+|..|..-||..|-.- .-.||.|....-
T Consensus 1 ~G~~Cp---iC~k----~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 1 SGNFCP---LCDK----CYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp -CCBCT---TTCC----BCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCcCC---CCcC----ccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 466787 6764 222111 13669999999999999843 248999987543
No 44
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=51.50 E-value=5 Score=37.44 Aligned_cols=20 Identities=30% Similarity=0.909 Sum_probs=16.4
Q ss_pred CceeecccccceechhhhcC
Q 001141 1042 GEVERCKSCEAVFHKPCFKK 1061 (1142)
Q Consensus 1042 ~~t~rC~~C~SVFHk~Cf~k 1061 (1142)
.....|..|..|||-.|+++
T Consensus 27 ~~l~pCRvC~RvfH~~CL~r 46 (89)
T 1wil_A 27 ESLFPCRVCTRVFHDGCLRR 46 (89)
T ss_dssp SCCSSCSSSSSCCCHHHHHH
T ss_pred cceeccccccccccHhhccc
Confidence 34456999999999999975
No 45
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=51.49 E-value=7.5 Score=39.26 Aligned_cols=41 Identities=27% Similarity=0.561 Sum_probs=29.5
Q ss_pred cccccccCCCCCCCeeeccCCCceeecccccceechhhhcC--------CCCCCchhhhhH
Q 001141 1021 VPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKK--------LTSCSCGTSLVV 1073 (1142)
Q Consensus 1021 FICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k--------~~~CPkCaRlr~ 1073 (1142)
..|. +|.+.. ....|..|...||..|... .=.||.|.....
T Consensus 5 ~~C~---~C~~~g---------~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 5 DWCA---VCQNGG---------ELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SSCT---TTCCCS---------SCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred Cccc---cCCCCC---------eeeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 4576 687643 3568999999999999732 126999986543
No 46
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=51.39 E-value=12 Score=32.71 Aligned_cols=39 Identities=33% Similarity=0.758 Sum_probs=27.8
Q ss_pred ccccccccCCCCCCCeeeccCCCceeecccccceechhhhcC----C----CCCCchhh
Q 001141 1020 GVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKK----L----TSCSCGTS 1070 (1142)
Q Consensus 1020 GFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k----~----~~CPkCaR 1070 (1142)
+..|. +|.+.. ....|..|...||..|..- . =.||.|..
T Consensus 12 ~~~C~---vC~~~~---------~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 12 GARCG---VCGDGT---------DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp TCCCT---TTSCCT---------TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCCcC---CCCCCC---------eEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 34576 787632 3568999999999999841 1 27999963
No 47
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.14 E-value=16 Score=32.85 Aligned_cols=66 Identities=21% Similarity=0.318 Sum_probs=44.4
Q ss_pred ccccccccccccccCCchhhhhhHhhcCCCCcccccccCceecCCCCCCCccccccceeec--ccCcccccchhHHHHHH
Q 001141 835 SQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLHH--WDFTRYPVSQLAKSFLD 912 (1142)
Q Consensus 835 sQ~yrCAgC~~~Ii~GltsLRdfLktLsv~k~RlC~YtGkYYCs~CH~ndtsVIPARVLhn--WDFS~ypVS~iAk~fL~ 912 (1142)
.....|..|++++.. +..-+-|..+|..||..|-.. ...||..-... -...+..||+..+..|.
T Consensus 12 ~~~~~C~~C~~~F~~-------------~~RrHHCR~CG~vfC~~Cs~~-~~~l~~~g~~~p~~~~~~~RVC~~C~~~l~ 77 (84)
T 1x4u_A 12 NNFGNCTGCSATFSV-------------LKKRRSCSNCGNSFCSRCCSF-KVPKSSMGATAPEAQRETVFVCASCNQTLS 77 (84)
T ss_dssp CCCSSCSSSCCCCCS-------------SSCCEECSSSCCEECTTTSCE-EECSTTTSCCCSSCSSCCEEECHHHHHHHH
T ss_pred CCCCcCcCcCCcccc-------------chhhhhhcCCCcEEChhhcCC-ceecccccccCccccCCccEECHHHHHHHh
Confidence 344579999988631 234488999999999999654 34455422111 12467889999999887
Q ss_pred Hh
Q 001141 913 SV 914 (1142)
Q Consensus 913 ~i 914 (1142)
..
T Consensus 78 ~~ 79 (84)
T 1x4u_A 78 KS 79 (84)
T ss_dssp SC
T ss_pred cc
Confidence 53
No 48
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=49.85 E-value=11 Score=32.19 Aligned_cols=41 Identities=22% Similarity=0.600 Sum_probs=29.6
Q ss_pred CccccccccCCCCCCCeeeccCCCceeecccccceechhhhcCC-CCCC
Q 001141 1019 VGVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKL-TSCS 1066 (1142)
Q Consensus 1019 KGFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k~-~~CP 1066 (1142)
+...|. .|.+ +|+-+-. ...+|..|+-..|+.|..+. ..|+
T Consensus 22 ~pt~C~---~C~~---~l~Gl~~-qg~~C~~C~~~~Hk~C~~~v~~~C~ 63 (65)
T 2enz_A 22 SPTFCE---HCGT---LLWGLAR-QGLKCDACGMNVHHRCQTKVANLCG 63 (65)
T ss_dssp SCCBCS---SSCC---BCCCSSS-CSEEESSSCCEECTTTTTTSCSCTT
T ss_pred CCcCch---hcCh---hheecCC-cccccCCCCCccCHhHHhhCcCcCC
Confidence 445687 7874 6765433 46799999999999998764 3453
No 49
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=49.53 E-value=5.6 Score=36.48 Aligned_cols=37 Identities=16% Similarity=0.353 Sum_probs=26.7
Q ss_pred CceeecccccceechhhhcCC------CCCCchhhhhHHHhhh
Q 001141 1042 GEVERCKSCEAVFHKPCFKKL------TSCSCGTSLVVETAVN 1078 (1142)
Q Consensus 1042 ~~t~rC~~C~SVFHk~Cf~k~------~~CPkCaRlr~~k~~~ 1078 (1142)
+....|..|...||..|+.-. =.||.|...+..+..+
T Consensus 40 ~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~~~ 82 (88)
T 2l43_A 40 NVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPALE 82 (88)
T ss_dssp EEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC--
T ss_pred CCEEECCCCCchhhcccCCCCccCCCceECccccCccchhhhh
Confidence 356689999999999999531 2799998766555544
No 50
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.82 E-value=13 Score=33.56 Aligned_cols=41 Identities=22% Similarity=0.658 Sum_probs=30.3
Q ss_pred CccccccccCCCCCCCeeeccCCCceeecccccceechhhhcCC-CCCC
Q 001141 1019 VGVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKL-TSCS 1066 (1142)
Q Consensus 1019 KGFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k~-~~CP 1066 (1142)
+...|. .|.+ +|+-+-. .-.+|..|+-.+|+.|..+. ..|+
T Consensus 27 ~pt~C~---~C~~---~l~Gl~k-qG~~C~~C~~~~Hk~C~~~v~~~C~ 68 (85)
T 2eli_A 27 SPTFCD---HCGS---LLYGLIH-QGMKCDTCDMNVHKQCVINVPSLCG 68 (85)
T ss_dssp SCCBCS---SSCC---BCCCSSS-CEEECSSSCCEEETTTTTTSCSCCC
T ss_pred CCcCCc---ccCc---ccccccc-CCCcCCCcCCccCHhHHhhcCCcCC
Confidence 446787 7874 6766543 56799999999999998764 3454
No 51
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.53 E-value=7.3 Score=32.13 Aligned_cols=25 Identities=20% Similarity=0.589 Sum_probs=19.3
Q ss_pred ecccccceechhhhcC----CCCCCchhh
Q 001141 1046 RCKSCEAVFHKPCFKK----LTSCSCGTS 1070 (1142)
Q Consensus 1046 rC~~C~SVFHk~Cf~k----~~~CPkCaR 1070 (1142)
.-..|+-+||+.|+.+ ...||-|..
T Consensus 36 ~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~ 64 (69)
T 2ea6_A 36 VSTECGHVFCSQCLRDSLKNANTCPTCRK 64 (69)
T ss_dssp EECSSSCEEEHHHHHHHHHHCSSCTTTCC
T ss_pred EeCCCCChhcHHHHHHHHHcCCCCCCCCC
Confidence 4567999999999853 358998863
No 52
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=48.27 E-value=12 Score=34.67 Aligned_cols=41 Identities=32% Similarity=0.673 Sum_probs=29.0
Q ss_pred CccccccccCCCCCCCeeeccCCCceeecccccceechhhhcCC--------CCCCchhhh
Q 001141 1019 VGVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKL--------TSCSCGTSL 1071 (1142)
Q Consensus 1019 KGFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k~--------~~CPkCaRl 1071 (1142)
....|. +|.+.. ....|..|...||..|.... =.||.|...
T Consensus 24 n~~~C~---vC~~~g---------~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 24 SATICR---VCQKPG---------DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSCCS---SSCSSS---------CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCcCc---CcCCCC---------CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 345676 687642 34579999999999999321 169999754
No 53
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=48.06 E-value=15 Score=33.15 Aligned_cols=41 Identities=24% Similarity=0.614 Sum_probs=28.5
Q ss_pred ccccccccCcc------ccccccCCCCCCCeeeccCCCceeecccccceechhhhc
Q 001141 1011 EQCLICCDVGV------PCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFK 1060 (1142)
Q Consensus 1011 ~~CeLCq~KGF------ICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~ 1060 (1142)
..|..|+..+. .|+ +|.... +.+....|..|...||..|..
T Consensus 11 ~~c~~c~~~~~W~C~~C~C~---vC~~~~------d~~~ll~CD~C~~~yH~~Cl~ 57 (77)
T 3shb_A 11 PSCKHCKDDVNRLCRVCACH---LCGGRQ------DPDKQLMCDECDMAFHIYCLD 57 (77)
T ss_dssp CSCTTTTTCTTSCCTTTSBT---TTCCCS------CGGGEEECTTTCCEEETTTSS
T ss_pred ccccccCCCCCCCCCCCcCC---ccCCCC------CCcceeEeCCCCCccCcccCC
Confidence 35666666432 355 787632 335677899999999999986
No 54
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.62 E-value=9 Score=32.44 Aligned_cols=22 Identities=27% Similarity=0.705 Sum_probs=17.4
Q ss_pred cccceechhhhcC----CCCCCchhh
Q 001141 1049 SCEAVFHKPCFKK----LTSCSCGTS 1070 (1142)
Q Consensus 1049 ~C~SVFHk~Cf~k----~~~CPkCaR 1070 (1142)
.|+-+||+.|+.+ ...||-|.+
T Consensus 35 ~C~H~f~~~Ci~~~~~~~~~CP~Cr~ 60 (74)
T 2ep4_A 35 PCKHAFHRKCLIKWLEVRKVCPLCNM 60 (74)
T ss_dssp TTTEEEEHHHHHHHHHHCSBCTTTCC
T ss_pred CCCCEecHHHHHHHHHcCCcCCCcCc
Confidence 4999999999843 458998853
No 55
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=47.16 E-value=9 Score=34.28 Aligned_cols=25 Identities=32% Similarity=0.692 Sum_probs=18.8
Q ss_pred ecccccceechhhhc----CCCCCCchhh
Q 001141 1046 RCKSCEAVFHKPCFK----KLTSCSCGTS 1070 (1142)
Q Consensus 1046 rC~~C~SVFHk~Cf~----k~~~CPkCaR 1070 (1142)
+...|+-+||..|.. ....||-|..
T Consensus 57 ~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~ 85 (91)
T 2l0b_A 57 TELPCHHYFHKPCVSIWLQKSGTCPVCRC 85 (91)
T ss_dssp EEETTTEEEEHHHHHHHHTTTCBCTTTCC
T ss_pred EecCCCChHHHHHHHHHHHcCCcCcCcCc
Confidence 434599999999974 3468998863
No 56
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=47.04 E-value=12 Score=30.42 Aligned_cols=29 Identities=21% Similarity=0.574 Sum_probs=21.8
Q ss_pred CceeecccccceechhhhcC--------CCCCCchhh
Q 001141 1042 GEVERCKSCEAVFHKPCFKK--------LTSCSCGTS 1070 (1142)
Q Consensus 1042 ~~t~rC~~C~SVFHk~Cf~k--------~~~CPkCaR 1070 (1142)
+....|..|...||..|... .=.||.|..
T Consensus 13 ~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 13 DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 35668999999999999942 115888853
No 57
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=46.86 E-value=11 Score=29.85 Aligned_cols=27 Identities=19% Similarity=0.588 Sum_probs=20.5
Q ss_pred eeecccccceechhhhcC----CCCCCchhh
Q 001141 1044 VERCKSCEAVFHKPCFKK----LTSCSCGTS 1070 (1142)
Q Consensus 1044 t~rC~~C~SVFHk~Cf~k----~~~CPkCaR 1070 (1142)
..+...|+-+||+.|+.+ ...||-|.+
T Consensus 21 ~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~ 51 (55)
T 2ecm_A 21 VAHVLPCGHLLHRTCYEEMLKEGYRCPLCSG 51 (55)
T ss_dssp CEEECTTSCEEETTHHHHHHHHTCCCTTSCC
T ss_pred CeEecCCCCcccHHHHHHHHHcCCcCCCCCC
Confidence 446677999999999853 368998853
No 58
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=46.61 E-value=13 Score=32.68 Aligned_cols=60 Identities=20% Similarity=0.386 Sum_probs=43.0
Q ss_pred cccccccccccCCchhhhhhHhhcCCCCcccccccCceecCCCCCCCccccccceeecccCcccccchhHHHHHHHhh
Q 001141 838 YTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTRYPVSQLAKSFLDSVY 915 (1142)
Q Consensus 838 yrCAgC~~~Ii~GltsLRdfLktLsv~k~RlC~YtGkYYCs~CH~ndtsVIPARVLhnWDFS~ypVS~iAk~fL~~i~ 915 (1142)
..|..|++++.. +...+-|..+|..||..|-.. ...||..-. ..+..||+..+..|+.|.
T Consensus 12 ~~C~~C~~~F~~-------------~~RrHHCR~CG~v~C~~Cs~~-~~~lp~~~~----~~~~RVC~~C~~~l~~i~ 71 (73)
T 1vfy_A 12 DACMICSKKFSL-------------LNRKHHCRSCGGVFCQEHSSN-SIPLPDLGI----YEPVRVCDSCFEDYEFIV 71 (73)
T ss_dssp SBCTTTCCBCBT-------------TBCCEECTTTCCEECGGGSCE-EEEEGGGTE----EEEEEECHHHHHHHHHHH
T ss_pred CcccCCCCccCC-------------ccccccCCCCCEEEcccccCC-eEEcccCCC----CCCCEECHHHHHHHHHHh
Confidence 369999987631 234588999999999999764 344554211 356789999999888764
No 59
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=45.83 E-value=17 Score=29.11 Aligned_cols=37 Identities=22% Similarity=0.557 Sum_probs=27.3
Q ss_pred CccccccccCCCCCCCeeeccCCCceeecccccceechhhhcCC
Q 001141 1019 VGVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKL 1062 (1142)
Q Consensus 1019 KGFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k~ 1062 (1142)
+...|. .|.+ +|+-+- ....+|..|+-..|+.|..+.
T Consensus 10 ~pt~C~---~C~~---~l~g~~-~qg~~C~~C~~~~H~~C~~~v 46 (50)
T 1ptq_A 10 SPTFCD---HCGS---LLWGLV-KQGLKCEDCGMNVHHKCREKV 46 (50)
T ss_dssp SCCBCT---TTCC---BCCSSS-SCEEEETTTCCEECHHHHTTS
T ss_pred CCCCcC---CCCc---eeeccC-CccCEeCCCCCeECHHHhhhc
Confidence 345677 6873 676543 356799999999999998754
No 60
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=45.29 E-value=14 Score=40.97 Aligned_cols=41 Identities=29% Similarity=0.565 Sum_probs=27.7
Q ss_pred CccccccccCCCCCCCeeeccCCCceeecccccceechhhhcCCCCCC
Q 001141 1019 VGVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKLTSCS 1066 (1142)
Q Consensus 1019 KGFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k~~~CP 1066 (1142)
+...|. .|.. .|+-+- ..-++|..|+.++|+.|..+...|+
T Consensus 356 ~~t~C~---~C~~---~~~g~~-~qg~~C~~C~~~~h~~C~~~~~~C~ 396 (406)
T 2vrw_B 356 ETTSCK---ACQM---LLRGTF-YQGYRCYRCRAPAHKECLGRVPPCG 396 (406)
T ss_dssp SCCBCT---TTCC---BCCSSS-SCEEEETTTCCEECGGGGGGSCCC-
T ss_pred CCCCCc---cccc---hhceeC-CCCCCCCCCcCccchhhhhhCCCCC
Confidence 345676 6874 454332 2456899999999999998754454
No 61
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=44.95 E-value=10 Score=39.18 Aligned_cols=41 Identities=22% Similarity=0.513 Sum_probs=29.5
Q ss_pred cccccccCCCCCCCeeeccCCCceeecccccceechhhhcC--------CCCCCchhhhhH
Q 001141 1021 VPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKK--------LTSCSCGTSLVV 1073 (1142)
Q Consensus 1021 FICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k--------~~~CPkCaRlr~ 1073 (1142)
..|. +|.+.. ....|..|...||..|... .=.||.|.....
T Consensus 8 ~~C~---~C~~~g---------~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 8 DWCA---VCQNGG---------DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SSBT---TTCCCE---------EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCC---CCCCCC---------ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 4576 688643 3567999999999999832 127999986543
No 62
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=44.57 E-value=4.3 Score=38.22 Aligned_cols=55 Identities=22% Similarity=0.447 Sum_probs=32.1
Q ss_pred ccccccccCc-cccccccCCCCCCCeeeccCCCceeecccccceechhhhcC----CCCCCchhh
Q 001141 1011 EQCLICCDVG-VPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKK----LTSCSCGTS 1070 (1142)
Q Consensus 1011 ~~CeLCq~KG-FICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k----~~~CPkCaR 1070 (1142)
+.|.+|...- ..|. +|... .-.+|=+. ...+-..|+-+||..|... ...||-|.+
T Consensus 38 d~CaIC~~~~~~~c~---~C~~~-~~~~~~~~-~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~ 97 (106)
T 3dpl_R 38 DNCAICRNHIMDLCI---ECQAN-QASATSEE-CTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 97 (106)
T ss_dssp CCCSSSCSCTTSCCT---THHHH-TTCC---C-CCEEEETTSCEEEHHHHHHHHTTCSBCSSSCS
T ss_pred CCCccCChhHhCcCc---hhhcc-ccccCCcc-ceEeecccCcEECHHHHHHHHHcCCcCcCCCC
Confidence 4688887653 2344 45421 11233232 2335568999999999843 468998865
No 63
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=44.38 E-value=17 Score=33.84 Aligned_cols=45 Identities=22% Similarity=0.680 Sum_probs=31.6
Q ss_pred cccccccCccccccccCCCCCCCeeeccCCCceeecccccceechhhhcCC--------CCCCchh
Q 001141 1012 QCLICCDVGVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKL--------TSCSCGT 1069 (1142)
Q Consensus 1012 ~CeLCq~KGFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k~--------~~CPkCa 1069 (1142)
.|..|. +|. +|....+ ......|..|...||..|.... -.||.|.
T Consensus 50 ~C~~C~----~C~---~C~~~~~------~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~ 102 (111)
T 2ysm_A 50 QCPECK----VCQ---NCKQSGE------DSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCR 102 (111)
T ss_dssp CCTTTC----CCT---TTCCCSC------CTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHH
T ss_pred cCCcCC----ccc---ccCccCC------CCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCc
Confidence 566665 576 7886432 2457899999999999999621 1577664
No 64
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=42.14 E-value=14 Score=31.79 Aligned_cols=41 Identities=24% Similarity=0.663 Sum_probs=29.7
Q ss_pred CccccccccCCCCCCCeeeccCCCceeecccccceechhhhcCC-CCCC
Q 001141 1019 VGVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKL-TSCS 1066 (1142)
Q Consensus 1019 KGFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k~-~~CP 1066 (1142)
+-..|. .|.+ +|+-+- ....+|..|+-..|+.|..+. ..|+
T Consensus 23 ~pt~C~---~C~~---~l~Gl~-~qg~~C~~C~~~~Hk~C~~~v~~~C~ 64 (66)
T 1y8f_A 23 TPTYCY---ECEG---LLWGIA-RQGMRCTECGVKCHEKCQDLLNADCK 64 (66)
T ss_dssp SCCCCT---TTCC---CCCSSC-CEEEEETTTCCEECTTHHHHSCCCC-
T ss_pred CCcChh---hcCh---hhcccC-cceeEcCCCCCeeCHHHHhhCcCcCC
Confidence 456787 7874 676543 357799999999999998764 3454
No 65
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=41.57 E-value=15 Score=31.32 Aligned_cols=28 Identities=25% Similarity=0.584 Sum_probs=21.6
Q ss_pred ceeecccccceechhhhcCC--------CCCCchhh
Q 001141 1043 EVERCKSCEAVFHKPCFKKL--------TSCSCGTS 1070 (1142)
Q Consensus 1043 ~t~rC~~C~SVFHk~Cf~k~--------~~CPkCaR 1070 (1142)
....|..|...||..|.... =.||.|..
T Consensus 20 ~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 55 (61)
T 1mm2_A 20 ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTC 55 (61)
T ss_dssp SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTT
T ss_pred CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcC
Confidence 34589999999999999621 16998864
No 66
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=41.54 E-value=5.5 Score=38.39 Aligned_cols=56 Identities=21% Similarity=0.422 Sum_probs=0.0
Q ss_pred ccccccccCc-cccccccCCCCCCCeeeccCCCceeecccccceechhhhcC----CCCCCchhhh
Q 001141 1011 EQCLICCDVG-VPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKK----LTSCSCGTSL 1071 (1142)
Q Consensus 1011 ~~CeLCq~KG-FICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k----~~~CPkCaRl 1071 (1142)
+.|.+|...= ..|. .|..+ ...+|-+. ....-..|+-+||..|... ...||-|.+-
T Consensus 49 d~CaICl~~~~~~c~---~C~~~-~~~~~~~~-~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~ 109 (117)
T 4a0k_B 49 DNCAICRNHIMDLCI---ECQAN-QASATSEE-CTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 109 (117)
T ss_dssp ------------------------------------------------------------------
T ss_pred CcCeECChhhcCcCh---hhhcc-cccccccc-cccccCCcCceEcHHHHHHHHHcCCcCCCCCCe
Confidence 4577776542 2343 45431 22333332 2334457999999999854 4589988653
No 67
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=41.05 E-value=2.4 Score=38.02 Aligned_cols=34 Identities=24% Similarity=0.462 Sum_probs=16.1
Q ss_pred eeecccccceechhhhcCCCCCCchhhhhHHHhhh
Q 001141 1044 VERCKSCEAVFHKPCFKKLTSCSCGTSLVVETAVN 1078 (1142)
Q Consensus 1044 t~rC~~C~SVFHk~Cf~k~~~CPkCaRlr~~k~~~ 1078 (1142)
+++|+ |+...=-.=..+.+.|||+++++++|.+-
T Consensus 4 vv~C~-C~~~~~~~~~~kT~~C~CG~~~~~~k~ri 37 (71)
T 1gh9_A 4 IFRCD-CGRALYSREGAKTRKCVCGRTVNVKDRRI 37 (71)
T ss_dssp EEEET-TSCCEEEETTCSEEEETTTEEEECCSSSC
T ss_pred EEECC-CCCEEEEcCCCcEEECCCCCeeeeceEEE
Confidence 44566 65553332233334566555555544433
No 68
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=40.63 E-value=9.5 Score=34.98 Aligned_cols=28 Identities=25% Similarity=0.570 Sum_probs=20.9
Q ss_pred eeecccccceechhhhcC---------CCCCCchhhh
Q 001141 1044 VERCKSCEAVFHKPCFKK---------LTSCSCGTSL 1071 (1142)
Q Consensus 1044 t~rC~~C~SVFHk~Cf~k---------~~~CPkCaRl 1071 (1142)
+.+...|+-+||..|+.. ...||-|...
T Consensus 55 ~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~ 91 (114)
T 1v87_A 55 VGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTI 91 (114)
T ss_dssp CEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCB
T ss_pred ceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCc
Confidence 445678999999999731 3589999643
No 69
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.49 E-value=16 Score=30.47 Aligned_cols=38 Identities=24% Similarity=0.629 Sum_probs=27.0
Q ss_pred ccccccccCCCCCCCeeeccCCCceeecccccceechhhhcCC--------CCCCchh
Q 001141 1020 GVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKL--------TSCSCGT 1069 (1142)
Q Consensus 1020 GFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k~--------~~CPkCa 1069 (1142)
..+|. +|... .....|..|...||..|.... =.||.|.
T Consensus 9 ~~~C~---vC~~~---------g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 9 EDFCS---VCRKS---------GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp CCSCS---SSCCS---------SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCc---cCCCC---------CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 45676 68753 245689999999999999621 1588774
No 70
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=40.22 E-value=15 Score=31.38 Aligned_cols=41 Identities=22% Similarity=0.585 Sum_probs=29.3
Q ss_pred CccccccccCCCCCCCeeeccCCCceeecccccceechhhhcCC-CCCC
Q 001141 1019 VGVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKL-TSCS 1066 (1142)
Q Consensus 1019 KGFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k~-~~CP 1066 (1142)
+...|. .|.+ .|+-+- ..-.+|..|+-..|+.|..+. ..|.
T Consensus 19 ~pt~C~---~C~~---~l~Gl~-~qg~~C~~C~~~~Hk~C~~~v~~~C~ 60 (65)
T 3uej_A 19 SPTFCD---HCGS---LLWGLV-KQGLKCEDCGMNVHHKCREKVANLCE 60 (65)
T ss_dssp SCCBCT---TTCC---BCCSSS-SCEEEETTTCCEECHHHHTTSCSEEE
T ss_pred CCCccc---ccCh---hhhccC-ceeeECCCCCCeEchhHhhhCCCcCC
Confidence 445687 7874 676543 356799999999999998764 3443
No 71
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.75 E-value=12 Score=32.81 Aligned_cols=51 Identities=22% Similarity=0.485 Sum_probs=33.1
Q ss_pred ccccccccCc-cccccccCCCCCCCeeeccCC-Cceeecccccceechhhhc----CCCCCCchhh
Q 001141 1011 EQCLICCDVG-VPCCARQACDDPSSLIFTFQE-GEVERCKSCEAVFHKPCFK----KLTSCSCGTS 1070 (1142)
Q Consensus 1011 ~~CeLCq~KG-FICE~~qiC~d~~dIIFPFq~-~~t~rC~~C~SVFHk~Cf~----k~~~CPkCaR 1070 (1142)
..|.+|...- ..|- +|.. +|.. +.+..-..|+-+||+.|.. ....||-|.+
T Consensus 16 ~~C~IC~~~~~~~C~---iC~~------~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 72 (81)
T 2ecl_A 16 DTCAICRVQVMDACL---RCQA------ENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQ 72 (81)
T ss_dssp SCBTTTTBCTTSCCT---THHH------HTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCC
T ss_pred CCCcccChhhhccCc---cccc------ccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCC
Confidence 4688887764 3454 5653 2222 2344556799999999974 3468998864
No 72
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=39.31 E-value=16 Score=31.92 Aligned_cols=43 Identities=21% Similarity=0.508 Sum_probs=30.2
Q ss_pred ccccccccCCCCCCCeeeccCCCceeecccccceechhhhcC--------CCCCCchhhh
Q 001141 1020 GVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKK--------LTSCSCGTSL 1071 (1142)
Q Consensus 1020 GFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k--------~~~CPkCaRl 1071 (1142)
+.+|. +|..+. +......|..|..-||..|..- .-.||.|..-
T Consensus 18 ~~~C~---~C~~~~------~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 18 IWICP---GCNKPD------DGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANK 68 (75)
T ss_dssp EECBT---TTTBCC------SSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred CcCCC---CCCCCC------CCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCc
Confidence 45676 688632 2334679999999999999842 1269999653
No 73
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=38.75 E-value=15 Score=37.77 Aligned_cols=38 Identities=34% Similarity=0.716 Sum_probs=27.7
Q ss_pred ccccccCCCCCCCeeeccCCCceeecccccceechhhhcC--------CCCCCchhhh
Q 001141 1022 PCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKK--------LTSCSCGTSL 1071 (1142)
Q Consensus 1022 ICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k--------~~~CPkCaRl 1071 (1142)
.|. +|.+.. ....|..|...||..|... .-.||.|...
T Consensus 4 ~C~---~C~~~g---------~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 4 ICR---VCQKPG---------DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CBT---TTCCCS---------SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred cCc---cCCCCC---------ceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 466 687643 3457999999999999942 1269999765
No 74
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=38.73 E-value=11 Score=34.23 Aligned_cols=28 Identities=14% Similarity=0.494 Sum_probs=21.5
Q ss_pred eeecccccceechhhhcC----C-CCCCchhhh
Q 001141 1044 VERCKSCEAVFHKPCFKK----L-TSCSCGTSL 1071 (1142)
Q Consensus 1044 t~rC~~C~SVFHk~Cf~k----~-~~CPkCaRl 1071 (1142)
...|..|+-+||+.|+.+ . ..||.|..-
T Consensus 35 p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~ 67 (100)
T 3lrq_A 35 ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAP 67 (100)
T ss_dssp EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCB
T ss_pred ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCc
Confidence 446789999999999852 2 489988643
No 75
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=38.11 E-value=29 Score=32.66 Aligned_cols=47 Identities=28% Similarity=0.629 Sum_probs=32.8
Q ss_pred ccccccccCccccccccCCCCCCCeeeccCCCceeecccccceechhhhcCC--------CCCCchh
Q 001141 1011 EQCLICCDVGVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKL--------TSCSCGT 1069 (1142)
Q Consensus 1011 ~~CeLCq~KGFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k~--------~~CPkCa 1069 (1142)
-.|..|+ +|. +|.... .+.+....|..|...||..|.... =.||.|+
T Consensus 56 W~C~~C~----~C~---vC~~~~-----~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~ 110 (112)
T 3v43_A 56 WQCIECK----TCS---SCRDQG-----KNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICR 110 (112)
T ss_dssp CCCTTTC----CBT---TTCCCC-----CTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTS
T ss_pred cccccCC----ccc---cccCcC-----CCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCC
Confidence 3688776 576 788532 133456789999999999999421 2677774
No 76
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.53 E-value=13 Score=32.71 Aligned_cols=38 Identities=13% Similarity=0.412 Sum_probs=27.0
Q ss_pred hhHhhccccccccccccccCCchhhhhhHhhcCCCCccccc--ccCceecCCCCCC
Q 001141 830 KQMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCE--YTGQLFCSTCHTN 883 (1142)
Q Consensus 830 eqgL~sQ~yrCAgC~~~Ii~GltsLRdfLktLsv~k~RlC~--YtGkYYCs~CH~n 883 (1142)
.+.+-..+++|+.|+++|..+ .++. ..|++||..|+..
T Consensus 35 ~~~wH~~CF~C~~C~~~L~~~----------------~~~~~~~~g~~yC~~~y~~ 74 (82)
T 2co8_A 35 GHFFHRSCFRCHTCEATLWPG----------------GYEQHPGDGHFYCLQHLPQ 74 (82)
T ss_dssp TBCCBTTTCBCSSSCCBCCTT----------------SEECCTTTCCCEETTTCCC
T ss_pred CCeeCCCcCEEcCCCCCcCCC----------------ceeEeCcCCEEEChHHHHh
Confidence 345667889999998876421 2342 4799999999864
No 77
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=37.49 E-value=37 Score=31.07 Aligned_cols=62 Identities=18% Similarity=0.343 Sum_probs=44.3
Q ss_pred ccccccccccccccCCchhhhhhHhhcCCCCcccccccCceecCCCCCCCccccccceeecccCcccccchhHHHHHHHh
Q 001141 835 SQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTRYPVSQLAKSFLDSV 914 (1142)
Q Consensus 835 sQ~yrCAgC~~~Ii~GltsLRdfLktLsv~k~RlC~YtGkYYCs~CH~ndtsVIPARVLhnWDFS~ypVS~iAk~fL~~i 914 (1142)
.+...|..|++++.. +..-+-|..+|..||..|-... ..+|. .-.+..||+..+..|...
T Consensus 18 ~~~~~C~~C~~~F~~-------------~~RrhhCr~CG~v~C~~Cs~~~-~~l~~------~~~~~RVC~~C~~~l~~~ 77 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTF-------------TKRRHHCRACGKVFCGVCCNRK-CKLQY------LEKEARVCVVCYETISKA 77 (90)
T ss_dssp GGCCBCTTTCCBCCS-------------SSCCEECTTTCCEECGGGSCEE-EEETT------TTEEEEECHHHHHHHHHH
T ss_pred ccCCcCcCCCCcccc-------------hhhCccccCCCCEECCcccCCe-eecCC------CCCCCeECHHHHHHHHHH
Confidence 445579999987631 2344789999999999998753 34453 226789999999988765
Q ss_pred hc
Q 001141 915 YN 916 (1142)
Q Consensus 915 ~s 916 (1142)
..
T Consensus 78 ~~ 79 (90)
T 3t7l_A 78 QA 79 (90)
T ss_dssp C-
T ss_pred hh
Confidence 44
No 78
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.49 E-value=12 Score=34.45 Aligned_cols=41 Identities=17% Similarity=0.498 Sum_probs=28.6
Q ss_pred ccccccCCCCCCCeeeccCCCceeecccccceechhhhcC--------CCCCCchhhh
Q 001141 1022 PCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKK--------LTSCSCGTSL 1071 (1142)
Q Consensus 1022 ICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k--------~~~CPkCaRl 1071 (1142)
+|. +|.... +......|..|...||..|... .=.||.|..-
T Consensus 18 ~C~---vC~~~~------~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 18 ICQ---VCSRGD------EDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCS---SSCCSG------GGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCc---cCCCcC------CCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 466 687632 1235679999999999999962 1159999654
No 79
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=37.12 E-value=24 Score=31.20 Aligned_cols=33 Identities=21% Similarity=0.504 Sum_probs=25.3
Q ss_pred ccccccccCCCCCCCeeeccCCCceeecccccceechhhhcCC
Q 001141 1020 GVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKL 1062 (1142)
Q Consensus 1020 GFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k~ 1062 (1142)
-..|. .|.+ +| + ..-.+|..|+-..|+.|..+.
T Consensus 35 pt~C~---~C~~---~l--~--~qG~kC~~C~~~cHkkC~~~V 67 (72)
T 2fnf_X 35 PGWCD---LCGR---EV--L--RQALRCANCKFTCHSECRSLI 67 (72)
T ss_dssp CCBCT---TTSS---BC--S--SCCEECTTSSCEECTGGGGGC
T ss_pred Ccchh---hhhH---HH--H--hCcCccCCCCCeechhhhccC
Confidence 34577 6874 56 3 346799999999999998764
No 80
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.66 E-value=12 Score=32.99 Aligned_cols=41 Identities=27% Similarity=0.515 Sum_probs=29.9
Q ss_pred CccccccccCCCCCCCeeeccCCCceeecccccceechhhhcCCC--CCC
Q 001141 1019 VGVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKLT--SCS 1066 (1142)
Q Consensus 1019 KGFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k~~--~CP 1066 (1142)
+-..|. .|.+ +|+=+- ..-.+|..|+-.+|+.|..+.. .|+
T Consensus 27 ~pt~C~---~C~~---~lwGl~-kqG~~C~~C~~~~Hk~C~~~v~~~~C~ 69 (74)
T 2db6_A 27 KPKFCD---VCAR---MIVLNN-KFGLRCKNCKTNIHEHCQSYVEMQRCS 69 (74)
T ss_dssp SCEECS---SSCC---EECHHH-HEEEEESSSCCEECTTTTGGGSSSBCC
T ss_pred CCcCch---hcCh---hhcccc-CCccccCCCCCccChhHHhhCCCCcCC
Confidence 446787 7874 676532 2467999999999999997653 365
No 81
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=36.47 E-value=21 Score=31.76 Aligned_cols=40 Identities=20% Similarity=0.517 Sum_probs=28.0
Q ss_pred CCCCCCCeeeccCCCceeecccccceechhhhcC---------CCCCCchhhhh
Q 001141 1028 ACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKK---------LTSCSCGTSLV 1072 (1142)
Q Consensus 1028 iC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k---------~~~CPkCaRlr 1072 (1142)
+|..+.+ + ...-.+|..|..=||..|..- .-.||.|...+
T Consensus 16 ~C~~~~d---~--~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 16 LCRQPYN---V--NHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp TTSCSCC---S--SSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred EcCCccC---C--CCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 5886321 1 234569999999999999841 23799998654
No 82
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=35.95 E-value=24 Score=30.95 Aligned_cols=38 Identities=29% Similarity=0.537 Sum_probs=27.1
Q ss_pred CCCCCCCeeeccCCCceeecccccceechhhhcC-------------CCCCCchhhh
Q 001141 1028 ACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKK-------------LTSCSCGTSL 1071 (1142)
Q Consensus 1028 iC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k-------------~~~CPkCaRl 1071 (1142)
+|+.+. +...-.+|..|..=||..|..- .-.||.|...
T Consensus 20 ~C~~~~------~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 20 ICRQPH------NNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TTCCCC------CSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred ECCCcc------CCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 588632 2235679999999999999841 2478888753
No 83
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=35.27 E-value=26 Score=33.98 Aligned_cols=55 Identities=24% Similarity=0.471 Sum_probs=39.9
Q ss_pred ccccccccccccCCchhhhhhHhhcCCCCcccccccCceecCCCCCCCccccccceeecccCcccccchhHHHHH
Q 001141 837 HYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTRYPVSQLAKSFL 911 (1142)
Q Consensus 837 ~yrCAgC~~~Ii~GltsLRdfLktLsv~k~RlC~YtGkYYCs~CH~ndtsVIPARVLhnWDFS~ypVS~iAk~fL 911 (1142)
...|..|++++.. +..-+.|..+|..||..|-.. ...||. ...+..||+..+..|
T Consensus 69 ~~~C~~C~~~Fs~-------------~~RrHHCR~CG~vfC~~Cs~~-~~~~p~------~~~p~RVC~~C~~~l 123 (125)
T 1joc_A 69 VQNCMACGKGFSV-------------TVRRHHCRQCGNIFCAECSAK-NALTPS------SKKPVRVCDACFNDL 123 (125)
T ss_dssp CCBCTTTCCBCCS-------------SSCCEECTTTCCEECGGGSCE-EECCTT------CSSCEEECHHHHHHT
T ss_pred CCCCcCcCCcccc-------------ccccccCCCCCeEEChHHhCC-ccccCC------CCCCCEeCHHHHHHh
Confidence 3469999987631 234489999999999999765 345664 246778998887754
No 84
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=35.25 E-value=23 Score=37.97 Aligned_cols=49 Identities=22% Similarity=0.504 Sum_probs=30.5
Q ss_pred cccccccCcc------ccccccCCCCCCCeeeccCCCceeecccccceechhhhcC-------C--CCCCchh
Q 001141 1012 QCLICCDVGV------PCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKK-------L--TSCSCGT 1069 (1142)
Q Consensus 1012 ~CeLCq~KGF------ICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k-------~--~~CPkCa 1069 (1142)
.|..|...+. .|. +|.... +.+....|..|...||..|... . =.||.|.
T Consensus 160 ~C~~c~~~~~w~C~~c~C~---vC~~~~------~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~ 223 (226)
T 3ask_A 160 SCKHCKDDVNRLCRVCACH---LCGGRQ------DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 223 (226)
T ss_dssp CCTTTTTCTTSCCTTTSCS---SSCCCC------C--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC
T ss_pred ccccccCCcCEecCCCCCc---CCCCCC------CCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCc
Confidence 4666655431 365 788632 2245668999999999999961 1 1599885
No 85
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=35.25 E-value=27 Score=29.61 Aligned_cols=32 Identities=22% Similarity=0.536 Sum_probs=24.6
Q ss_pred cccccccCCCCCCCeeeccCCCceeecccccceechhhhcCC
Q 001141 1021 VPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKL 1062 (1142)
Q Consensus 1021 FICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k~ 1062 (1142)
..|. .|.+ +| + ..-.+|..|+-..|+.|..+.
T Consensus 23 t~C~---~C~~---~i--~--kqg~kC~~C~~~cH~kC~~~v 54 (59)
T 1rfh_A 23 GWCD---LCGR---EV--L--RQALRCANCKFTCHSECRSLI 54 (59)
T ss_dssp EECT---TTCS---EE--C--SCCEECTTTSCEECHHHHTTC
T ss_pred eEch---hcch---hh--h--hCccEeCCCCCeEehhhhhhC
Confidence 4576 6863 67 4 345799999999999998764
No 86
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=34.75 E-value=33 Score=29.55 Aligned_cols=40 Identities=25% Similarity=0.580 Sum_probs=29.4
Q ss_pred CccccccccCCCCCCCeeeccCCCceeecccccceechhhhcCC-CCCC
Q 001141 1019 VGVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKL-TSCS 1066 (1142)
Q Consensus 1019 KGFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k~-~~CP 1066 (1142)
+...|. .|.+ .|- |- ...++|..|+.+.|+.|-... ..|+
T Consensus 18 ~~~~C~---~Cg~---~i~-~g-kq~~kC~dC~~~cH~~C~~~~~~~C~ 58 (61)
T 4b6d_A 18 KPESCV---PCGK---RIK-FG-KLSLKCRDCRVVSHPECRDRCPLPCI 58 (61)
T ss_dssp SCEECT---TTCC---EEC-TT-CEEEEESSSSCEECGGGGGGSCSSCC
T ss_pred CCcccc---cccC---EEE-Ee-eEeeECCCCCCeEchhHhhcCCCCCC
Confidence 566787 7863 674 54 367899999999999997653 4554
No 87
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=34.59 E-value=12 Score=35.94 Aligned_cols=26 Identities=27% Similarity=0.485 Sum_probs=17.9
Q ss_pred ecccccceechhhhcCCCCCCchhhhh
Q 001141 1046 RCKSCEAVFHKPCFKKLTSCSCGTSLV 1072 (1142)
Q Consensus 1046 rC~~C~SVFHk~Cf~k~~~CPkCaRlr 1072 (1142)
+|.+|+-+| +.=+.+...||.|+.-.
T Consensus 69 ~C~~CG~~F-~~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 69 QCRKCGFVF-KAEINIPSRCPKCKSEW 94 (105)
T ss_dssp BBTTTCCBC-CCCSSCCSSCSSSCCCC
T ss_pred ChhhCcCee-cccCCCCCCCcCCCCCc
Confidence 699999999 22223346899998543
No 88
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=34.20 E-value=22 Score=31.90 Aligned_cols=58 Identities=26% Similarity=0.533 Sum_probs=42.4
Q ss_pred cccccccccccccCCchhhhhhHhhcCCCCcccccccCceecCCCCCCCccccccceeecccCcccccchhHHHHHHH
Q 001141 836 QHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTRYPVSQLAKSFLDS 913 (1142)
Q Consensus 836 Q~yrCAgC~~~Ii~GltsLRdfLktLsv~k~RlC~YtGkYYCs~CH~ndtsVIPARVLhnWDFS~ypVS~iAk~fL~~ 913 (1142)
....|..|++++.. +..-+-|..+|..||..|-.. ...||. ...+..||+..+..|..
T Consensus 18 ~~~~C~~C~~~Fs~-------------~~RrHHCR~CG~v~C~~Cs~~-~~~l~~------~~~~~RVC~~C~~~l~~ 75 (82)
T 2yw8_A 18 EATHCRQCEKEFSI-------------SRRKHHCRNCGHIFCNTCSSN-ELALPS------YPKPVRVCDSCHTLLLQ 75 (82)
T ss_dssp CCCBCTTTCCBCBT-------------TBCCEECTTTCCEECSGGGCE-EECCTT------CSSCEEECHHHHHHTTC
T ss_pred cCCcccCcCCcccC-------------ccccccCCCCCCEEChHHhCC-eeecCC------CCCcCEECHHHHHHHHH
Confidence 34579999987631 234488999999999999765 344564 25778899999887653
No 89
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=33.88 E-value=29 Score=30.49 Aligned_cols=43 Identities=26% Similarity=0.575 Sum_probs=27.6
Q ss_pred cccccccCc-cccc--cccCCCCCCCeeeccCCCceeecccccceechhhhc
Q 001141 1012 QCLICCDVG-VPCC--ARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFK 1060 (1142)
Q Consensus 1012 ~CeLCq~KG-FICE--~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~ 1060 (1142)
.|..|++.. ..|. ...+|.... +.+....|..|...||..|..
T Consensus 4 ~c~~c~~~~~w~C~~C~C~~C~~~~------~~~~ll~CD~C~~~yH~~Cl~ 49 (70)
T 3asl_A 4 SCKHCKDDVNRLCRVCACHLCGGRQ------DPDKQLMCDECDMAFHIYCLD 49 (70)
T ss_dssp SCTTTTTCTTSCCTTTSBTTTCCCS------CGGGEEECTTTCCEEEGGGSS
T ss_pred ccccccCCCCeECCCCCCcCCCCcC------CCCCEEEcCCCCCceecccCC
Confidence 466666654 2221 122787532 234567899999999999996
No 90
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=33.73 E-value=29 Score=31.75 Aligned_cols=60 Identities=25% Similarity=0.490 Sum_probs=44.3
Q ss_pred ccccccccccccCCchhhhhhHhhcCCCCcccccccCceecCCCCCCCccccccceeecccCcccccchhHHHHHHHhh
Q 001141 837 HYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTRYPVSQLAKSFLDSVY 915 (1142)
Q Consensus 837 ~yrCAgC~~~Ii~GltsLRdfLktLsv~k~RlC~YtGkYYCs~CH~ndtsVIPARVLhnWDFS~ypVS~iAk~fL~~i~ 915 (1142)
...|..|++++.. +..-+-|..+|..||..|-.. ...||.. ...+..||+..+..|....
T Consensus 9 ~~~C~~C~~~F~~-------------~~RrHHCR~CG~vfC~~Cs~~-~~~lp~~-----g~~~~RVC~~C~~~l~~~~ 68 (88)
T 1wfk_A 9 ESRCYGCAVKFTL-------------FKKEYGCKNCGRAFCNGCLSF-SALVPRA-----GNTQQKVCKQCHTILTRGS 68 (88)
T ss_dssp CSBCTTTCCBCCS-------------SSCEEECSSSCCEEETTTSCE-EEEETTT-----TSEEEEECHHHHHHHHHCC
T ss_pred CCCCcCcCCcccC-------------ccccccCCCCCCEEChhHcCC-ceecccc-----CCCcCEECHHHHHHHHhcc
Confidence 3469999987631 234478999999999999864 3455542 2468899999999988754
No 91
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=32.46 E-value=28 Score=36.10 Aligned_cols=57 Identities=23% Similarity=0.447 Sum_probs=40.4
Q ss_pred cccccccccccCCchhhhhhHhhcCCCCcccccccCceecCCCCCCCccccccceeecccCcccccchhHHHHHH
Q 001141 838 YTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTRYPVSQLAKSFLD 912 (1142)
Q Consensus 838 yrCAgC~~~Ii~GltsLRdfLktLsv~k~RlC~YtGkYYCs~CH~ndtsVIPARVLhnWDFS~ypVS~iAk~fL~ 912 (1142)
..|..|++++.. +..-+-|..+|..||..|-... ..+|..-. ..+..||+..+..|.
T Consensus 162 ~~C~~C~~~F~~-------------~~rrhhCr~CG~v~C~~Cs~~~-~~~~~~~~----~~~~RvC~~C~~~l~ 218 (220)
T 1dvp_A 162 RVCHRCRVEFTF-------------TNRKHHCRNCGQVFCGQCTAKQ-CPLPKYGI----EKEVRVCDGCFAALQ 218 (220)
T ss_dssp SBCTTTCCBCCS-------------SSCCEECTTTCCEECSTTSCEE-EEEGGGTE----EEEEEECHHHHHHHH
T ss_pred CccCCCCCccCC-------------cccccccCCcCCEEChHHhCCe-eecCcCCC----CCCCEeCHHHHHHHh
Confidence 479999987631 2344889999999999997753 34554211 356789999888765
No 92
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=32.30 E-value=26 Score=29.61 Aligned_cols=44 Identities=25% Similarity=0.535 Sum_probs=29.5
Q ss_pred ccccccccCCCCCCCeeeccC-CCceeecccccceechhhhcC---------CCCCCchhhhh
Q 001141 1020 GVPCCARQACDDPSSLIFTFQ-EGEVERCKSCEAVFHKPCFKK---------LTSCSCGTSLV 1072 (1142)
Q Consensus 1020 GFICE~~qiC~d~~dIIFPFq-~~~t~rC~~C~SVFHk~Cf~k---------~~~CPkCaRlr 1072 (1142)
+.+|. +|+.+ ++ ...-.+|..|..=||..|... .-.||.|...+
T Consensus 6 ~~~C~---~C~~~------~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 6 SGQCG---ACGES------YAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp CCCCS---SSCCC------CCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCC---CCCCc------cCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence 45565 68753 22 234569999999999999842 13688887533
No 93
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=32.08 E-value=34 Score=30.80 Aligned_cols=61 Identities=23% Similarity=0.386 Sum_probs=43.6
Q ss_pred ccccccccccccccCCchhhhhhHhhcCCCCcccccccCceecCCCCCCCccccccceeecccCcccccchhHHHHHHH
Q 001141 835 SQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTRYPVSQLAKSFLDS 913 (1142)
Q Consensus 835 sQ~yrCAgC~~~Ii~GltsLRdfLktLsv~k~RlC~YtGkYYCs~CH~ndtsVIPARVLhnWDFS~ypVS~iAk~fL~~ 913 (1142)
.....|..|++++.. +..-+-|..+|..||..|-.. ...||..- ..++..||+..+..|..
T Consensus 19 ~~~~~C~~C~~~Fs~-------------~~RrHHCR~CG~v~C~~Cs~~-~~~lp~~~----~~~~~RVC~~C~~~l~~ 79 (84)
T 1z2q_A 19 EDAPACNGCGCVFTT-------------TVRRHHCRNCGYVLCGDCSRH-RAAIPMRG----ITEPERVCDACYLALRS 79 (84)
T ss_dssp TTCCBCTTTCCBCCT-------------TSCCEECTTTCCEECTGGGCC-EEEETTTT----EEEEEECCHHHHHHHHT
T ss_pred CCCCCCcCcCCcccc-------------chhcccccCCCcEEChHHhCC-eEeccCCC----CCCCCEECHHHHHHHhh
Confidence 345579999988631 234488999999999999765 44566532 14667899999888764
No 94
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=31.75 E-value=20 Score=35.07 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=20.1
Q ss_pred eecccccceechhhhcC-----CCCCCchhh
Q 001141 1045 ERCKSCEAVFHKPCFKK-----LTSCSCGTS 1070 (1142)
Q Consensus 1045 ~rC~~C~SVFHk~Cf~k-----~~~CPkCaR 1070 (1142)
..+..|+-+||+.|+.+ ...||-|..
T Consensus 68 ~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~ 98 (165)
T 2ckl_B 68 MTTKECLHRFCADCIITALRSGNKECPTCRK 98 (165)
T ss_dssp EEETTTCCEEEHHHHHHHHHTTCCBCTTTCC
T ss_pred CEeCCCCChhHHHHHHHHHHhCcCCCCCCCC
Confidence 45668999999999842 357998874
No 95
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=31.28 E-value=24 Score=35.05 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=23.9
Q ss_pred ceeecccccceechhhhcC---------CCCCCchhhhh
Q 001141 1043 EVERCKSCEAVFHKPCFKK---------LTSCSCGTSLV 1072 (1142)
Q Consensus 1043 ~t~rC~~C~SVFHk~Cf~k---------~~~CPkCaRlr 1072 (1142)
.-.+|..|...||..|..- .-.||.|...+
T Consensus 22 ~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 22 FYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp CEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CEeECCCCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 4679999999999999842 13799998765
No 96
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=31.23 E-value=14 Score=33.96 Aligned_cols=47 Identities=23% Similarity=0.487 Sum_probs=30.5
Q ss_pred CccccccccCCCCCCCeeeccCCCceeecccccceechhhhc----CCCCCCchhh
Q 001141 1019 VGVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFK----KLTSCSCGTS 1070 (1142)
Q Consensus 1019 KGFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~----k~~~CPkCaR 1070 (1142)
..+.|. ||.+ ...-|.+......-..|+-+||+.|+. ....||-|.+
T Consensus 6 ~~~~C~---IC~~--~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~ 56 (133)
T 4ap4_A 6 GTVSCP---ICMD--GYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRK 56 (133)
T ss_dssp CSCBCT---TTCC--BHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCC
T ss_pred CCCCCc---ccCh--hhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCC
Confidence 346676 7874 233344333334566899999999984 2458998865
No 97
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.07 E-value=24 Score=29.97 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=17.9
Q ss_pred cccceechhhhcC----------CCCCCchhhh
Q 001141 1049 SCEAVFHKPCFKK----------LTSCSCGTSL 1071 (1142)
Q Consensus 1049 ~C~SVFHk~Cf~k----------~~~CPkCaRl 1071 (1142)
.|+-+||+.|+.. ...||-|...
T Consensus 36 ~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~ 68 (85)
T 2ecv_A 36 DCGHSFCQACLTANHKKSMLDKGESSCPVCRIS 68 (85)
T ss_dssp SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCS
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCc
Confidence 5999999999853 4589988643
No 98
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=28.55 E-value=27 Score=32.89 Aligned_cols=46 Identities=24% Similarity=0.517 Sum_probs=31.3
Q ss_pred CccccccccCCCCCCCeeeccCCCceeecc-cccceechhhhcC--------------CCCCCchhhhh
Q 001141 1019 VGVPCCARQACDDPSSLIFTFQEGEVERCK-SCEAVFHKPCFKK--------------LTSCSCGTSLV 1072 (1142)
Q Consensus 1019 KGFICE~~qiC~d~~dIIFPFq~~~t~rC~-~C~SVFHk~Cf~k--------------~~~CPkCaRlr 1072 (1142)
.-++|. +|..+ .-+. ..-..|. .|..=||..|..- .-.||.|.+.+
T Consensus 2 ~~~~C~---iC~~p---~~~~--~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 2 LVYPCG---ACRSE---VNDD--QDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCCBCT---TTCSB---CCTT--SCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CcCCCC---CCCCc---cCCC--CCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 346787 78852 2222 3466898 9999999999842 13699998643
No 99
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.36 E-value=31 Score=29.57 Aligned_cols=37 Identities=16% Similarity=0.527 Sum_probs=26.5
Q ss_pred hHhhccccccccccccccCCchhhhhhHhhcCCCCcccccccCceecCCCCCC
Q 001141 831 QMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTN 883 (1142)
Q Consensus 831 qgL~sQ~yrCAgC~~~Ii~GltsLRdfLktLsv~k~RlC~YtGkYYCs~CH~n 883 (1142)
+..-.+.++|+.|+++|.. ..+....|++||..|+..
T Consensus 29 ~~wH~~CF~C~~C~~~L~~----------------~~f~~~~g~~yC~~cy~~ 65 (76)
T 1x68_A 29 SQWHSECFNCGKCSVSLVG----------------KGFLTQNKEIFCQKCGSG 65 (76)
T ss_dssp EEEEGGGCBCTTTCCBCSS----------------SCEEEETTEEEETTTTCC
T ss_pred cccCcccCChhhCCCcCCC----------------CceEeECCEEECHHHhhh
Confidence 3455678999999887641 134456789999999875
No 100
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=28.17 E-value=31 Score=40.45 Aligned_cols=40 Identities=30% Similarity=0.624 Sum_probs=26.4
Q ss_pred ccccccccCCCCCCCeeeccCCCceeecccccceechhhhcCCCCCC
Q 001141 1020 GVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKLTSCS 1066 (1142)
Q Consensus 1020 GFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k~~~CP 1066 (1142)
-..|. .|.. .|+=+- ..-++|..|+.++|+.|......|+
T Consensus 529 ~t~C~---~C~~---~l~gl~-~qg~~C~~C~~~vHk~C~~~v~~C~ 568 (587)
T 3ky9_A 529 TTSCK---ACQM---LLRGTF-YQGYRCHRCRASAHKECLGRVPPCG 568 (587)
T ss_dssp CCBCT---TTCS---BCCSSS-CCEEEETTTCCEECSGGGGGSCCC-
T ss_pred Ccccc---cccc---cccccc-cCCcCCCCCCCccchhhhhcCCCCC
Confidence 34565 5763 343332 2467999999999999998754443
No 101
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=27.73 E-value=38 Score=28.77 Aligned_cols=45 Identities=18% Similarity=0.440 Sum_probs=30.0
Q ss_pred ccccccccCCCCCCCeeeccCCCceeecccccceechhhhcCC-----------CCCCchhhh
Q 001141 1020 GVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKL-----------TSCSCGTSL 1071 (1142)
Q Consensus 1020 GFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k~-----------~~CPkCaRl 1071 (1142)
..+|. +|... +.-+......|..|...||..|.... =.||.|..-
T Consensus 6 ~~~C~---vC~~~----~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 6 SGVCT---ICQEE----YSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCBS---SSCCC----CCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCC---CCCCC----CCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 34676 68752 11233567789999999999998521 168888643
No 102
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=27.67 E-value=29 Score=30.16 Aligned_cols=27 Identities=33% Similarity=0.586 Sum_probs=21.8
Q ss_pred ceeecccccceechhhhc----CCCCCCchh
Q 001141 1043 EVERCKSCEAVFHKPCFK----KLTSCSCGT 1069 (1142)
Q Consensus 1043 ~t~rC~~C~SVFHk~Cf~----k~~~CPkCa 1069 (1142)
.+++|++|+.+|=..|-. ..++||-|.
T Consensus 29 ~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC~ 59 (59)
T 1z60_A 29 HVYVCAVCQNVFCVDCDVFVHDSLHSCPGCI 59 (59)
T ss_dssp EEECCTTTTCCBCHHHHHTTTTTSCSSSTTC
T ss_pred ccEECCccCcCcccchhHHHHhhccCCcCCC
Confidence 458999999999999953 357999874
No 103
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=27.45 E-value=30 Score=28.59 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=18.9
Q ss_pred ecccccceechhhhcC----CCCCCchh
Q 001141 1046 RCKSCEAVFHKPCFKK----LTSCSCGT 1069 (1142)
Q Consensus 1046 rC~~C~SVFHk~Cf~k----~~~CPkCa 1069 (1142)
....|+-+||+.|..+ ...||-|.
T Consensus 20 ~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr 47 (68)
T 1chc_A 20 MALPCLHAFCYVCITRWIRQNPTCPLCK 47 (68)
T ss_dssp EETTTTEEESTTHHHHHHHHSCSTTTTC
T ss_pred EecCCCCeeHHHHHHHHHhCcCcCcCCC
Confidence 4566999999999842 46899885
No 104
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.95 E-value=14 Score=31.01 Aligned_cols=36 Identities=19% Similarity=0.596 Sum_probs=21.8
Q ss_pred hHhhccccccccccccccCCchhhhhhHhhcCCCCcccccccCceecCCCCC
Q 001141 831 QMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHT 882 (1142)
Q Consensus 831 qgL~sQ~yrCAgC~~~Ii~GltsLRdfLktLsv~k~RlC~YtGkYYCs~CH~ 882 (1142)
+.+-.+.++|+.|+++|..+ .+....|++||..|+.
T Consensus 25 ~~~H~~CF~C~~C~~~L~~~----------------~f~~~~g~~yC~~c~~ 60 (70)
T 2d8x_A 25 NSWHPECFRCDLCQEVLADI----------------GFVKNAGRHLCRPCHN 60 (70)
T ss_dssp EEECTTTSBCSSSCCBCSSS----------------CCEEETTEEECHHHHH
T ss_pred ccccccCCEeCCCCCcCCCC----------------ccEeECCeEECHHHhh
Confidence 34555677888887766421 1223467788877764
No 105
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=26.84 E-value=38 Score=30.30 Aligned_cols=25 Identities=20% Similarity=0.445 Sum_probs=18.9
Q ss_pred ecccccceechhhhcC----CCCCCchhh
Q 001141 1046 RCKSCEAVFHKPCFKK----LTSCSCGTS 1070 (1142)
Q Consensus 1046 rC~~C~SVFHk~Cf~k----~~~CPkCaR 1070 (1142)
....|+-.||+.|+.. ...||-|..
T Consensus 37 ~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~ 65 (99)
T 2y43_A 37 IIPQCSHNYCSLCIRKFLSYKTQCPTCCV 65 (99)
T ss_dssp ECTTTCCEEEHHHHHHHHTTCCBCTTTCC
T ss_pred EECCCCCHhhHHHHHHHHHCCCCCCCCCC
Confidence 3457999999999742 358998864
No 106
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=25.90 E-value=17 Score=33.45 Aligned_cols=26 Identities=19% Similarity=0.535 Sum_probs=20.3
Q ss_pred eecccccceechhhhc----CCCCCCchhh
Q 001141 1045 ERCKSCEAVFHKPCFK----KLTSCSCGTS 1070 (1142)
Q Consensus 1045 ~rC~~C~SVFHk~Cf~----k~~~CPkCaR 1070 (1142)
.....|+-+||..|.. ....||.|..
T Consensus 92 ~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~ 121 (133)
T 4ap4_A 92 IVSTECGHVFCSQCLRDSLKNANTCPTCRK 121 (133)
T ss_dssp EEEETTSBEEEHHHHHHHHHHCSBCTTTCC
T ss_pred eEeCCCCChhhHHHHHHHHHcCCCCCCCCC
Confidence 3566899999999984 2468998864
No 107
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=25.76 E-value=40 Score=35.39 Aligned_cols=56 Identities=21% Similarity=0.491 Sum_probs=39.6
Q ss_pred ccccccccccCCchhhhhhHhhcCCCCcccccccCceecCCCCCCCccccccceeecccCcccccchhHHHHHH
Q 001141 839 TCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTRYPVSQLAKSFLD 912 (1142)
Q Consensus 839 rCAgC~~~Ii~GltsLRdfLktLsv~k~RlC~YtGkYYCs~CH~ndtsVIPARVLhnWDFS~ypVS~iAk~fL~ 912 (1142)
.|..|++++.. +..-+-|..+|..||..|-... ..+|..-. ..+..||+..+..|.
T Consensus 166 ~C~~C~~~F~~-------------~~RrhHCR~CG~v~C~~Cs~~~-~~~p~~~~----~~~~RVC~~C~~~l~ 221 (226)
T 3zyq_A 166 ECHRCRVQFGV-------------MTRKHHCRACGQIFCGKCSSKY-STIPKFGI----EKEVRVCEPCYEQLN 221 (226)
T ss_dssp BCTTTCCBCBT-------------TBCCEECTTTCCEECTTTCCEE-EEEGGGTE----EEEEEECHHHHHHHC
T ss_pred CCcCcCCCCCc-------------cccccccCCCcCEeChhhcCCc-ccCCCCCC----CCCCEeCHHHHHHhh
Confidence 69999987631 2344789999999999998753 44553211 246789999888765
No 108
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=25.41 E-value=24 Score=30.05 Aligned_cols=23 Identities=17% Similarity=0.499 Sum_probs=17.7
Q ss_pred cccceechhhhcC----------CCCCCchhhh
Q 001141 1049 SCEAVFHKPCFKK----------LTSCSCGTSL 1071 (1142)
Q Consensus 1049 ~C~SVFHk~Cf~k----------~~~CPkCaRl 1071 (1142)
.|+-+||+.|+.. ...||-|...
T Consensus 36 ~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~ 68 (85)
T 2ecw_A 36 DCNHSFCRACITLNYESNRNTDGKGNCPVCRVP 68 (85)
T ss_dssp TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCC
T ss_pred CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCc
Confidence 4999999999853 4589988643
No 109
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=25.05 E-value=29 Score=30.26 Aligned_cols=33 Identities=27% Similarity=0.718 Sum_probs=23.0
Q ss_pred ccccccccCCCCCCCeeeccCCCceeecc-cccceechhhhc
Q 001141 1020 GVPCCARQACDDPSSLIFTFQEGEVERCK-SCEAVFHKPCFK 1060 (1142)
Q Consensus 1020 GFICE~~qiC~d~~dIIFPFq~~~t~rC~-~C~SVFHk~Cf~ 1060 (1142)
..+|. +|..+ +.| ...-..|. .|..-||..|..
T Consensus 8 ~~~C~---~C~~p---~~~--~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 8 VYPCG---ICTNE---VND--DQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp -CBCT---TTCSB---CCT--TSCEEEBTTTTCCEEEHHHHT
T ss_pred cCcCc---cCCCc---cCC--CCCeEecccCccccCchhccC
Confidence 35676 68752 223 23467999 999999999974
No 110
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=24.74 E-value=39 Score=39.64 Aligned_cols=45 Identities=27% Similarity=0.585 Sum_probs=31.0
Q ss_pred CccccccccCCCCCCCeeeccC-CCceeecccccceechhhhcC---------CCCCCchhhhhH
Q 001141 1019 VGVPCCARQACDDPSSLIFTFQ-EGEVERCKSCEAVFHKPCFKK---------LTSCSCGTSLVV 1073 (1142)
Q Consensus 1019 KGFICE~~qiC~d~~dIIFPFq-~~~t~rC~~C~SVFHk~Cf~k---------~~~CPkCaRlr~ 1073 (1142)
.+..| +|+.+ ++ ...-.+|..|..=||-.|..- .-.||.|.....
T Consensus 36 ~~~yC----~C~~~------~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 90 (488)
T 3kv5_D 36 PPVYC----VCRQP------YDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHG 90 (488)
T ss_dssp CCEET----TTTEE------CCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHHC
T ss_pred CCeEE----eCCCc------CCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCcC
Confidence 34456 68853 33 234669999999999999831 137999987653
No 111
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.63 E-value=16 Score=32.32 Aligned_cols=37 Identities=19% Similarity=0.509 Sum_probs=25.0
Q ss_pred hhHhhccccccccccccccCCchhhhhhHhhcCCCCcccccccCceecCCCCC
Q 001141 830 KQMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHT 882 (1142)
Q Consensus 830 eqgL~sQ~yrCAgC~~~Ii~GltsLRdfLktLsv~k~RlC~YtGkYYCs~CH~ 882 (1142)
.+.+-.++++|+.|++.|..+ .+....|.+||..|+.
T Consensus 44 ~~~~H~~CF~C~~C~~~L~~~----------------~~~~~~g~~yC~~~y~ 80 (89)
T 1x64_A 44 DKYRHPECFVCADCNLNLKQK----------------GYFFVEGELYCETHAR 80 (89)
T ss_dssp SCEECTTTCCCSSSCCCTTTS----------------CCEEETTEEECHHHHH
T ss_pred CceECccCCEecCCCCCCCCC----------------CeEeECCEEECHHHHH
Confidence 355667788999998876421 2334478888887764
No 112
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.62 E-value=20 Score=30.79 Aligned_cols=37 Identities=14% Similarity=0.404 Sum_probs=23.8
Q ss_pred HhhccccccccccccccCCchhhhhhHhhcCCCCcccccccCceecCCCCCC
Q 001141 832 MLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTN 883 (1142)
Q Consensus 832 gL~sQ~yrCAgC~~~Ii~GltsLRdfLktLsv~k~RlC~YtGkYYCs~CH~n 883 (1142)
..-.+.++|+.|+.+|..+. .+....|..||..|+..
T Consensus 26 ~wH~~CF~C~~C~~~L~~~~---------------~f~~~~~~~yC~~C~~~ 62 (73)
T 1wig_A 26 HYHPSCALCVRCGQMFAEGE---------------EMYLQGSSIWHPACRQA 62 (73)
T ss_dssp CBCTTTSCCSSSCCCCCSSC---------------CCEEETTEEECTTHHHH
T ss_pred CCCCCcCEeCCCCCCCCCCC---------------eeEeeCCEEEChHHChH
Confidence 34557788888888764221 22334678889888754
No 113
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.31 E-value=41 Score=28.39 Aligned_cols=24 Identities=21% Similarity=0.472 Sum_probs=18.6
Q ss_pred cccccceechhhhcC----CCCCCchhh
Q 001141 1047 CKSCEAVFHKPCFKK----LTSCSCGTS 1070 (1142)
Q Consensus 1047 C~~C~SVFHk~Cf~k----~~~CPkCaR 1070 (1142)
-..|+-+||+.|..+ ...||-|..
T Consensus 31 ~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~ 58 (72)
T 2djb_A 31 ITECLHTFCKSCIVRHFYYSNRCPKCNI 58 (72)
T ss_dssp CSSSCCEECHHHHHHHHHHCSSCTTTCC
T ss_pred ECCCCCHHHHHHHHHHHHcCCcCCCcCc
Confidence 457999999999842 468998864
No 114
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=23.34 E-value=40 Score=27.73 Aligned_cols=37 Identities=24% Similarity=0.558 Sum_probs=26.1
Q ss_pred CCCCCCCeeeccCCCceeecccccceechhhhcC-------CCCCCchhh
Q 001141 1028 ACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKK-------LTSCSCGTS 1070 (1142)
Q Consensus 1028 iC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k-------~~~CPkCaR 1070 (1142)
+|+.+ .+...-.+|..|..=||..|..- .-.||.|++
T Consensus 8 ~C~~~------~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKP------FAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCB------CTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCc------CCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 68752 33345679999999999999842 136777753
No 115
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.10 E-value=39 Score=29.14 Aligned_cols=24 Identities=17% Similarity=0.509 Sum_probs=18.4
Q ss_pred ccccceechhhhcC-------CCCCCchhhh
Q 001141 1048 KSCEAVFHKPCFKK-------LTSCSCGTSL 1071 (1142)
Q Consensus 1048 ~~C~SVFHk~Cf~k-------~~~CPkCaRl 1071 (1142)
..|+-+||+.|+.+ ...||-|.+.
T Consensus 35 ~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~ 65 (88)
T 2ct2_A 35 LHCGHTICRQCLEKLLASSINGVRCPFCSKI 65 (88)
T ss_dssp CSSSCEEEHHHHHHHHHHCSSCBCCTTTCCC
T ss_pred CCCCChhhHHHHHHHHHcCCCCcCCCCCCCc
Confidence 36999999999853 1579988754
No 116
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=23.00 E-value=48 Score=32.27 Aligned_cols=49 Identities=22% Similarity=0.487 Sum_probs=35.7
Q ss_pred cccccccccccCCchhhhhhHhhcCCCCcccccccCceecCCCCCCCccccccceeecccCcccccchhHHHHHH
Q 001141 838 YTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTRYPVSQLAKSFLD 912 (1142)
Q Consensus 838 yrCAgC~~~Ii~GltsLRdfLktLsv~k~RlC~YtGkYYCs~CH~ndtsVIPARVLhnWDFS~ypVS~iAk~fL~ 912 (1142)
..|..|+.++.. +..-+-|.-+|..||..|-.... | ...||+..+.++.
T Consensus 20 ~~C~~C~~~Fs~-------------~~RkHHCR~CG~ifC~~Cs~~~~---~----------~vRVC~~C~~~~~ 68 (120)
T 1y02_A 20 PSCKSCGAHFAN-------------TARKQTCLDCKKNFCMTCSSQVG---N----------GPRLCLLCQRFRA 68 (120)
T ss_dssp CCCTTTCCCCSS-------------GGGCEECTTTCCEECGGGEEC-----------------CCEEHHHHHHHH
T ss_pred CcccCcCCcccc-------------ccccccCCCCCCeeCHHHhCCCC---C----------CceECHHHHHHHh
Confidence 469999988631 12347899999999999976532 2 2689999998865
No 117
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=22.84 E-value=23 Score=35.03 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=15.8
Q ss_pred eeecccccceechhhhcCCCCCCchh
Q 001141 1044 VERCKSCEAVFHKPCFKKLTSCSCGT 1069 (1142)
Q Consensus 1044 t~rC~~C~SVFHk~Cf~k~~~CPkCa 1069 (1142)
.++|..|+..|-.. .....||.|.
T Consensus 132 ~y~C~~Cg~~~~~~--~~~~~Cp~CG 155 (165)
T 2lcq_A 132 RYVCIGCGRKFSTL--PPGGVCPDCG 155 (165)
T ss_dssp CEEESSSCCEESSC--CGGGBCTTTC
T ss_pred EEECCCCCCcccCC--CCCCcCCCCC
Confidence 36888888888644 2224688775
No 118
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.82 E-value=19 Score=31.37 Aligned_cols=42 Identities=29% Similarity=0.690 Sum_probs=24.8
Q ss_pred hHhhccccccccccccccCCchhhhhhHhhcCCCCcccccccCceecCCCCCCCccccc
Q 001141 831 QMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLP 889 (1142)
Q Consensus 831 qgL~sQ~yrCAgC~~~Ii~GltsLRdfLktLsv~k~RlC~YtGkYYCs~CH~ndtsVIP 889 (1142)
+..-..+++|+.|+.+|..+ .+ ...|.+||..|+...-+.+|
T Consensus 35 ~~~H~~CF~C~~C~~~L~~~----------------~f-~~~g~~yC~~cy~~~f~p~~ 76 (79)
T 2cor_A 35 DPYHPDHFNCANCGKELTAD----------------AR-ELKGELYCLPCHDKMGVSGP 76 (79)
T ss_dssp SCCCTTTSBCSSSCCBCCTT----------------CE-EETTEEECHHHHHTTSCCSS
T ss_pred ceeCCCCCEeCCCCCccCCC----------------CE-eECCEEeCHHHHHHhCCCCC
Confidence 33455677888887766411 12 44678888877765433333
No 119
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.78 E-value=25 Score=29.37 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=17.7
Q ss_pred ccccceechhhhcC----CCCCCchhh
Q 001141 1048 KSCEAVFHKPCFKK----LTSCSCGTS 1070 (1142)
Q Consensus 1048 ~~C~SVFHk~Cf~k----~~~CPkCaR 1070 (1142)
..|+-+||+.|..+ ...||-|..
T Consensus 30 ~~CgH~fc~~Ci~~~~~~~~~CP~Cr~ 56 (70)
T 2ecn_A 30 LPCAHSFCQKCIDKWSDRHRNCPICRL 56 (70)
T ss_dssp ETTTEEECHHHHHHSSCCCSSCHHHHH
T ss_pred cCCCCcccHHHHHHHHHCcCcCCCcCC
Confidence 45899999999852 358998853
No 120
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=22.58 E-value=46 Score=30.29 Aligned_cols=25 Identities=20% Similarity=0.403 Sum_probs=19.2
Q ss_pred ecccccceechhhhcC----CCCCCchhh
Q 001141 1046 RCKSCEAVFHKPCFKK----LTSCSCGTS 1070 (1142)
Q Consensus 1046 rC~~C~SVFHk~Cf~k----~~~CPkCaR 1070 (1142)
....|+-.||+.|+.. ...||-|..
T Consensus 30 ~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~ 58 (108)
T 2ckl_A 30 TIIECLHSFCKTCIVRYLETSKYCPICDV 58 (108)
T ss_dssp EETTTCCEEEHHHHHHHHTSCSBCTTTCC
T ss_pred EeCCCCChhhHHHHHHHHHhCCcCcCCCc
Confidence 4457999999999742 368998864
No 121
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=22.45 E-value=17 Score=30.30 Aligned_cols=16 Identities=31% Similarity=0.841 Sum_probs=10.3
Q ss_pred hhcccccccccccccc
Q 001141 833 LESQHYTCAGCHKHFD 848 (1142)
Q Consensus 833 L~sQ~yrCAgC~~~Ii 848 (1142)
.-...++|+.|+++|.
T Consensus 35 ~H~~CF~C~~C~~~L~ 50 (72)
T 3f6q_B 35 YHEQCFVCAQCFQQFP 50 (72)
T ss_dssp EETTTSSCTTTCCCCG
T ss_pred eCcCCCcccCCCCCCC
Confidence 4456677777776653
No 122
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=22.15 E-value=65 Score=30.28 Aligned_cols=20 Identities=30% Similarity=0.659 Sum_probs=16.9
Q ss_pred CCceeecccccceechhhhc
Q 001141 1041 EGEVERCKSCEAVFHKPCFK 1060 (1142)
Q Consensus 1041 ~~~t~rC~~C~SVFHk~Cf~ 1060 (1142)
.+....|..|...||..|..
T Consensus 23 ~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 23 PEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCCCEECTTTCCEECHHHHT
T ss_pred chhceEhhhcCCCCCCchhc
Confidence 34567999999999999984
No 123
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=21.76 E-value=61 Score=28.34 Aligned_cols=42 Identities=26% Similarity=0.518 Sum_probs=28.8
Q ss_pred CccccccccCCCCCCCeeeccCCCceeecccccceechhhhcCC-------CCCCchhh
Q 001141 1019 VGVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKL-------TSCSCGTS 1070 (1142)
Q Consensus 1019 KGFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k~-------~~CPkCaR 1070 (1142)
.+..| +|+.+ ++...-.+|..|..-||..|..-. -.||.|..
T Consensus 18 ~~~~C----iC~~~------~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC----FCMKP------FAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS----TTCCC------CTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe----ECCCc------CCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 34556 58753 233446799999999999998421 36877753
No 124
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.74 E-value=33 Score=27.34 Aligned_cols=20 Identities=25% Similarity=0.609 Sum_probs=15.2
Q ss_pred cccceechhhhcC-------CCCCCch
Q 001141 1049 SCEAVFHKPCFKK-------LTSCSCG 1068 (1142)
Q Consensus 1049 ~C~SVFHk~Cf~k-------~~~CPkC 1068 (1142)
.|+-+||+.|+.+ ...||-|
T Consensus 32 ~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 32 ECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 5999999999742 2478866
No 125
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.68 E-value=40 Score=27.91 Aligned_cols=23 Identities=17% Similarity=0.546 Sum_probs=17.7
Q ss_pred ccccceechhhhcC-----CCCCCchhh
Q 001141 1048 KSCEAVFHKPCFKK-----LTSCSCGTS 1070 (1142)
Q Consensus 1048 ~~C~SVFHk~Cf~k-----~~~CPkCaR 1070 (1142)
..|+-+||+.|+.+ ...||-|..
T Consensus 31 ~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~ 58 (66)
T 2ecy_A 31 TECGHRFCESCMAALLSSSSPKCTACQE 58 (66)
T ss_dssp CSSSCCCCHHHHHHHHTTSSCCCTTTCC
T ss_pred CCCCCHHHHHHHHHHHHhCcCCCCCCCc
Confidence 37999999999852 357998864
No 126
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.58 E-value=23 Score=31.43 Aligned_cols=37 Identities=22% Similarity=0.568 Sum_probs=23.2
Q ss_pred hhHhhccccccccccccccCCchhhhhhHhhcCCCCcccccccCceecCCCCC
Q 001141 830 KQMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHT 882 (1142)
Q Consensus 830 eqgL~sQ~yrCAgC~~~Ii~GltsLRdfLktLsv~k~RlC~YtGkYYCs~CH~ 882 (1142)
.+.+-.++++|+.|+++|... .+....|.+||..|+.
T Consensus 44 ~~~~H~~CF~C~~C~~~L~~~----------------~f~~~~g~~yC~~cy~ 80 (90)
T 2dar_A 44 GKSWHPEEFNCAHCKNTMAYI----------------GFVEEKGALYCELCYE 80 (90)
T ss_dssp TEEECTTTCBCSSSCCBCSSS----------------CBEESSSCEECHHHHH
T ss_pred CccccccCCccCCCCCCCCCC----------------EeEeECCEEECHHHHH
Confidence 345666788888888776421 2333467788877763
No 127
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=21.14 E-value=52 Score=32.93 Aligned_cols=30 Identities=27% Similarity=0.685 Sum_probs=23.7
Q ss_pred CccccccccCCCCCCCeeeccCCCceeecccccceechhhhc
Q 001141 1019 VGVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFK 1060 (1142)
Q Consensus 1019 KGFICE~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~ 1060 (1142)
....|. +|.+. ....-|..|-.+||..|..
T Consensus 62 ~~d~C~---vC~~G---------G~LlcCD~Cpr~Fh~~Cl~ 91 (142)
T 2lbm_A 62 MDEQCR---WCAEG---------GNLICCDFCHNAFCKKCIL 91 (142)
T ss_dssp CBCSCS---SSCCC---------SSEEECSSSCCEEEHHHHH
T ss_pred CCCeec---ccCCC---------CcEEeCCCCCCeeeHhhcC
Confidence 346787 79874 3466899999999999986
No 128
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.95 E-value=71 Score=26.05 Aligned_cols=20 Identities=20% Similarity=0.560 Sum_probs=15.4
Q ss_pred cccceechhhhcC-------CCCCCch
Q 001141 1049 SCEAVFHKPCFKK-------LTSCSCG 1068 (1142)
Q Consensus 1049 ~C~SVFHk~Cf~k-------~~~CPkC 1068 (1142)
.|+-+||+.|+.+ ...||-|
T Consensus 37 ~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 37 DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 6999999999742 2378866
No 129
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.27 E-value=49 Score=28.56 Aligned_cols=36 Identities=17% Similarity=0.573 Sum_probs=23.6
Q ss_pred HhhccccccccccccccCCchhhhhhHhhcCCCCcccccccCceecCCCCCC
Q 001141 832 MLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTN 883 (1142)
Q Consensus 832 gL~sQ~yrCAgC~~~Ii~GltsLRdfLktLsv~k~RlC~YtGkYYCs~CH~n 883 (1142)
..-.+.++|+.|+++|... .+-...|++||..|+..
T Consensus 38 ~~H~~CF~C~~C~~~L~~~----------------~f~~~~~~~~C~~c~~~ 73 (82)
T 2ehe_A 38 HFHEGCFRCCRCQRSLADE----------------PFTCQDSELLCNDCYCS 73 (82)
T ss_dssp CCBTTTSBCTTTCCBCSSC----------------CEEEETTEEEETTTSSC
T ss_pred cccccCCeecCCCCccCCC----------------ccEeeCCEEECHHHHhh
Confidence 3455678888888776421 23344678889888864
No 130
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.25 E-value=25 Score=29.70 Aligned_cols=36 Identities=11% Similarity=0.452 Sum_probs=21.7
Q ss_pred HhhccccccccccccccCCchhhhhhHhhcCCCCcccccccCceecCCCCCC
Q 001141 832 MLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTN 883 (1142)
Q Consensus 832 gL~sQ~yrCAgC~~~Ii~GltsLRdfLktLsv~k~RlC~YtGkYYCs~CH~n 883 (1142)
..-.+.++|+.|+++|.. ..+....|++||..|+..
T Consensus 30 ~wH~~CF~C~~C~~~L~~----------------~~f~~~~g~~yC~~c~~~ 65 (72)
T 1x4l_A 30 QWHNDCFNCKKCSLSLVG----------------RGFLTERDDILCPDCGKD 65 (72)
T ss_dssp EECTTTCBCSSSCCBCTT----------------SCCEECSSSEECHHHHHT
T ss_pred ccCcccCEeccCCCcCCC----------------CccEeECCEEEChhHcCc
Confidence 344567788888776531 023334677888777643
No 131
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.22 E-value=28 Score=29.16 Aligned_cols=22 Identities=18% Similarity=0.534 Sum_probs=17.1
Q ss_pred cccceechhhhcC-------CCCCCchhh
Q 001141 1049 SCEAVFHKPCFKK-------LTSCSCGTS 1070 (1142)
Q Consensus 1049 ~C~SVFHk~Cf~k-------~~~CPkCaR 1070 (1142)
.|+-+||+.|+.+ ...||-|..
T Consensus 37 ~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~ 65 (73)
T 2ysl_A 37 DCGHNFCLKCITQIGETSCGFFKCPLCKT 65 (73)
T ss_dssp TTCCEEEHHHHHHHCSSSCSCCCCSSSCC
T ss_pred CCCChhhHHHHHHHHHcCCCCCCCCCCCC
Confidence 7999999999842 237998864
No 132
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=20.06 E-value=23 Score=29.38 Aligned_cols=35 Identities=31% Similarity=0.613 Sum_probs=20.1
Q ss_pred hHhhccccccccccccccCCchhhhhhHhhcCCCCcccccccCceecCCCC
Q 001141 831 QMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCH 881 (1142)
Q Consensus 831 qgL~sQ~yrCAgC~~~Ii~GltsLRdfLktLsv~k~RlC~YtGkYYCs~CH 881 (1142)
+..-.+.++|+.|+++|... .+-...|.+||..|+
T Consensus 25 ~~~H~~CF~C~~C~~~L~~~----------------~~~~~~g~~yC~~~y 59 (66)
T 1nyp_A 25 KQWHVEHFVCAKCEKPFLGH----------------RHYERKGLAYCETHY 59 (66)
T ss_dssp SBEETTTCBCTTTCCBCSSS----------------CCEEETTEEECHHHH
T ss_pred cccccCcCEECCCCCCCCCC----------------ceEeECCcEECHHHH
Confidence 34455667777777665311 233446777776665
Done!