BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001144
(1141 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GS7|C Chain C, Structure Of The Interleukin-15 Quaternary Complex
Length = 203
Score = 35.4 bits (80), Expect = 0.21, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 24/104 (23%)
Query: 189 LFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLFWQDEIPKMKAYVSDTEDLKL 248
L+ VV L DP +QATQ+L + + P P N+ L KL
Sbjct: 73 LYQTFVVQLQDPREPRRQATQMLXLQNLVIPWAPENLTLH------------------KL 114
Query: 249 DPSYQE-TWDDMIINFLAESLDVVQETDWLISLGNAFTEQYVLY 291
S E W++ +N E L V TDW +++TEQ V Y
Sbjct: 115 SESQLELNWNNRFLNHCLEHL-VQYRTDW----DHSWTEQSVDY 153
>pdb|2B5I|C Chain C, Cytokine Receptor Complex
pdb|3BPL|C Chain C, Crystal Structure Of The Il4-Il4r-Common Gamma Ternary
Complex
Length = 199
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 24/104 (23%)
Query: 189 LFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLFWQDEIPKMKAYVSDTEDLKL 248
L+ VV L DP +QATQ+L + + P P N+ L KL
Sbjct: 69 LYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLH------------------KL 110
Query: 249 DPSYQE-TWDDMIINFLAESLDVVQETDWLISLGNAFTEQYVLY 291
S E W++ +N E L V TDW +++TEQ V Y
Sbjct: 111 SESQLELNWNNRFLNHCLEHL-VQYRTDW----DHSWTEQSVDY 149
>pdb|3QAZ|C Chain C, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|F Chain F, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|I Chain I, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|L Chain L, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|O Chain O, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|R Chain R, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|U Chain U, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|X Chain X, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|AA Chain a, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|DD Chain d, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|GG Chain g, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|JJ Chain j, Il-2 Mutant D10 Ternary Complex
Length = 202
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 24/104 (23%)
Query: 189 LFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLFWQDEIPKMKAYVSDTEDLKL 248
L+ VV L DP +QATQ+L + + P P N+ L KL
Sbjct: 72 LYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLH------------------KL 113
Query: 249 DPSYQE-TWDDMIINFLAESLDVVQETDWLISLGNAFTEQYVLY 291
S E W++ +N E L V TDW +++TEQ V Y
Sbjct: 114 SESQLELNWNNRFLNHCLEHL-VQYRTDW----DHSWTEQSVDY 152
>pdb|3QB7|C Chain C, Interleukin-4 Mutant Rga Bound To Cytokine Receptor Common
Gamma
pdb|3QB7|D Chain D, Interleukin-4 Mutant Rga Bound To Cytokine Receptor Common
Gamma
Length = 203
Score = 35.0 bits (79), Expect = 0.23, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 24/104 (23%)
Query: 189 LFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLFWQDEIPKMKAYVSDTEDLKL 248
L+ VV L DP +QATQ+L + + P P N+ L KL
Sbjct: 73 LYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLH------------------KL 114
Query: 249 DPSYQE-TWDDMIINFLAESLDVVQETDWLISLGNAFTEQYVLY 291
S E W++ +N E L V TDW +++TEQ V Y
Sbjct: 115 SESQLELNWNNRFLNHCLEHL-VQYRTDW----DHSWTEQSVDY 153
>pdb|2ERJ|C Chain C, Crystal Structure Of The Heterotrimeric Interleukin-2
Receptor In Complex With Interleukin-2
pdb|2ERJ|G Chain G, Crystal Structure Of The Heterotrimeric Interleukin-2
Receptor In Complex With Interleukin-2
Length = 247
Score = 35.0 bits (79), Expect = 0.24, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 24/104 (23%)
Query: 189 LFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLFWQDEIPKMKAYVSDTEDLKL 248
L+ VV L DP +QATQ+L + + P P N+ L KL
Sbjct: 107 LYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLH------------------KL 148
Query: 249 DPSYQE-TWDDMIINFLAESLDVVQETDWLISLGNAFTEQYVLY 291
S E W++ +N E L V TDW +++TEQ V Y
Sbjct: 149 SESQLELNWNNRFLNHCLEHL-VQYRTDW----DHSWTEQSVDY 187
>pdb|2GGS|A Chain A, Crystal Structure Of Hypothetical Dtdp-4-Dehydrorhamnose
Reductase From Sulfolobus Tokodaii
pdb|2GGS|B Chain B, Crystal Structure Of Hypothetical Dtdp-4-Dehydrorhamnose
Reductase From Sulfolobus Tokodaii
Length = 273
Score = 31.2 bits (69), Expect = 3.8, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 316 NYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASHLDAVLEMLKGILDNIGQSLF 371
+YV D YK+ +I P N GL+K +G A D+++ GI N G ++
Sbjct: 108 DYVFDGEKGNYKEEDIPNPINYYGLSKLLGETFALQDDSLIIRTSGIFRNKGFPIY 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,715,261
Number of Sequences: 62578
Number of extensions: 1137443
Number of successful extensions: 2720
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2719
Number of HSP's gapped (non-prelim): 6
length of query: 1141
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1032
effective length of database: 8,152,335
effective search space: 8413209720
effective search space used: 8413209720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)