Query 001144
Match_columns 1141
No_of_seqs 217 out of 344
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 17:00:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001144.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001144hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2032 Uncharacterized conser 100.0 8E-28 1.7E-32 272.0 20.7 315 800-1140 9-353 (533)
2 KOG2032 Uncharacterized conser 99.0 3.3E-08 7.1E-13 114.0 22.7 473 428-1015 22-523 (533)
3 KOG2171 Karyopherin (importin) 98.6 0.0049 1.1E-07 78.6 50.3 697 321-1120 119-965 (1075)
4 KOG2171 Karyopherin (importin) 98.6 4.3E-05 9.2E-10 96.5 32.0 405 646-1132 40-477 (1075)
5 KOG1824 TATA-binding protein-i 97.7 0.38 8.2E-06 60.7 50.1 271 741-1126 650-929 (1233)
6 KOG1824 TATA-binding protein-i 97.2 1.2 2.7E-05 56.3 60.9 920 3-1094 10-1055(1233)
7 KOG1241 Karyopherin (importin) 96.6 3.4 7.3E-05 51.6 39.9 541 461-1093 124-729 (859)
8 PF01602 Adaptin_N: Adaptin N 96.4 2.2 4.7E-05 52.5 29.7 176 954-1134 322-501 (526)
9 PF12717 Cnd1: non-SMC mitotic 95.6 0.023 5E-07 60.0 6.4 108 1026-1136 5-112 (178)
10 PTZ00429 beta-adaptin; Provisi 95.1 15 0.00032 47.5 41.2 400 563-1119 100-510 (746)
11 PTZ00429 beta-adaptin; Provisi 94.8 10 0.00022 48.9 27.5 304 728-1121 126-438 (746)
12 PF13513 HEAT_EZ: HEAT-like re 94.5 0.042 9.1E-07 46.1 3.8 52 1063-1114 1-55 (55)
13 KOG1242 Protein containing ada 94.5 2.7 5.8E-05 51.5 20.1 311 759-1122 72-450 (569)
14 KOG0212 Uncharacterized conser 94.5 16 0.00034 44.6 27.5 257 756-1079 138-407 (675)
15 KOG2274 Predicted importin 9 [ 94.3 2.2 4.9E-05 54.0 19.2 285 430-826 503-790 (1005)
16 PF12755 Vac14_Fab1_bd: Vacuol 93.5 0.16 3.5E-06 48.2 5.9 86 1027-1115 7-95 (97)
17 KOG1248 Uncharacterized conser 93.4 37 0.0008 45.0 43.2 209 564-826 693-909 (1176)
18 PF05004 IFRD: Interferon-rela 93.2 13 0.00029 42.9 22.2 189 276-478 83-285 (309)
19 KOG2023 Nuclear transport rece 93.2 11 0.00024 46.6 21.6 392 646-1121 87-510 (885)
20 KOG0915 Uncharacterized conser 92.4 46 0.00099 45.3 27.0 285 739-1098 1036-1330(1702)
21 COG5215 KAP95 Karyopherin (imp 92.2 35 0.00076 41.8 27.9 460 260-818 326-813 (858)
22 PF14500 MMS19_N: Dos2-interac 91.8 10 0.00022 42.7 18.5 111 760-875 100-220 (262)
23 KOG1241 Karyopherin (importin) 91.8 45 0.00099 42.2 33.3 111 1005-1116 360-480 (859)
24 PRK13800 putative oxidoreducta 91.6 14 0.00031 48.9 22.3 102 995-1113 795-896 (897)
25 cd00020 ARM Armadillo/beta-cat 91.5 0.16 3.5E-06 48.6 3.3 106 1010-1115 8-119 (120)
26 KOG1991 Nuclear transport rece 90.4 6.3 0.00014 50.7 16.2 135 495-677 390-531 (1010)
27 PF13646 HEAT_2: HEAT repeats; 90.0 0.86 1.9E-05 41.5 6.5 85 1012-1112 2-88 (88)
28 PF12717 Cnd1: non-SMC mitotic 89.5 1 2.2E-05 47.6 7.4 136 999-1136 15-157 (178)
29 PRK09687 putative lyase; Provi 89.3 0.96 2.1E-05 51.4 7.6 89 1009-1113 159-247 (280)
30 PF10508 Proteasom_PSMB: Prote 89.0 68 0.0015 39.7 25.4 306 733-1117 67-421 (503)
31 COG5096 Vesicle coat complex, 88.8 2.1 4.6E-05 54.3 10.6 175 954-1137 34-212 (757)
32 KOG1248 Uncharacterized conser 88.1 1.1E+02 0.0024 40.9 41.6 300 797-1128 585-910 (1176)
33 PF02985 HEAT: HEAT repeat; I 87.7 0.16 3.4E-06 37.6 -0.1 28 1051-1078 2-29 (31)
34 KOG0212 Uncharacterized conser 87.3 53 0.0011 40.3 20.0 128 1005-1133 287-423 (675)
35 PF01602 Adaptin_N: Adaptin N 85.9 96 0.0021 38.1 38.5 392 292-818 53-448 (526)
36 PRK09687 putative lyase; Provi 84.8 2.1 4.6E-05 48.6 7.0 136 965-1114 48-186 (280)
37 PF10508 Proteasom_PSMB: Prote 84.6 1.1E+02 0.0025 37.8 29.5 309 299-677 56-365 (503)
38 PF12348 CLASP_N: CLASP N term 83.8 26 0.00057 38.0 14.9 118 646-820 91-212 (228)
39 KOG1061 Vesicle coat complex A 82.6 1.5E+02 0.0033 37.8 22.6 204 548-806 223-445 (734)
40 COG5096 Vesicle coat complex, 82.4 9.3 0.0002 48.7 11.7 125 984-1116 32-156 (757)
41 PF08064 UME: UME (NUC010) dom 82.3 1.4 3E-05 42.7 3.7 85 1050-1136 12-103 (107)
42 PF13513 HEAT_EZ: HEAT-like re 82.0 0.61 1.3E-05 39.0 1.0 51 1026-1076 4-55 (55)
43 KOG1242 Protein containing ada 81.9 1.4E+02 0.0031 37.1 30.9 386 647-1126 94-493 (569)
44 PF13646 HEAT_2: HEAT repeats; 81.8 1.4 3E-05 40.1 3.3 56 1052-1114 2-58 (88)
45 smart00802 UME Domain in UVSB 81.4 1.8 3.9E-05 41.9 4.0 85 1050-1136 12-103 (107)
46 PF02985 HEAT: HEAT repeat; I 80.9 3 6.5E-05 30.8 4.1 31 40-70 1-31 (31)
47 PLN03200 cellulose synthase-in 79.9 3.1E+02 0.0068 39.7 29.9 111 1009-1119 609-726 (2102)
48 PF12348 CLASP_N: CLASP N term 79.9 8.3 0.00018 42.0 9.2 107 1008-1117 93-207 (228)
49 KOG1059 Vesicle coat complex A 79.5 24 0.00053 44.2 13.4 192 842-1111 154-360 (877)
50 PF04826 Arm_2: Armadillo-like 77.4 5.2 0.00011 44.8 6.7 63 1050-1114 55-122 (254)
51 PF10363 DUF2435: Protein of u 76.2 2.8 6.1E-05 39.5 3.5 69 1052-1120 6-76 (92)
52 KOG1967 DNA repair/transcripti 75.5 1.7E+02 0.0036 38.3 19.2 181 729-940 112-308 (1030)
53 PF10363 DUF2435: Protein of u 74.6 9 0.0002 36.1 6.4 87 1009-1099 3-89 (92)
54 KOG1243 Protein kinase [Genera 74.0 14 0.00031 46.1 9.6 179 951-1136 234-418 (690)
55 PF12460 MMS19_C: RNAPII trans 72.9 2.2E+02 0.0047 34.3 29.5 131 987-1118 249-396 (415)
56 PF08167 RIX1: rRNA processing 71.4 16 0.00035 38.1 8.2 126 1005-1134 21-160 (165)
57 COG5181 HSH155 U2 snRNP splice 70.5 2.9E+02 0.0062 34.7 22.5 339 233-677 523-911 (975)
58 KOG0213 Splicing factor 3b, su 70.4 3.2E+02 0.0069 35.1 24.4 116 330-448 523-666 (1172)
59 cd00020 ARM Armadillo/beta-cat 70.4 3.7 8E-05 39.1 2.9 69 1050-1118 8-80 (120)
60 KOG4224 Armadillo repeat prote 69.8 5.1 0.00011 46.1 4.2 98 1019-1116 177-280 (550)
61 KOG2122 Beta-catenin-binding p 68.9 2.1E+02 0.0046 39.3 18.3 216 901-1118 314-603 (2195)
62 PF11864 DUF3384: Domain of un 67.6 3E+02 0.0065 33.7 25.5 135 758-916 150-288 (464)
63 KOG1060 Vesicle coat complex A 67.0 39 0.00085 42.9 11.1 62 1050-1114 109-170 (968)
64 KOG1062 Vesicle coat complex A 64.7 4.2E+02 0.009 34.4 19.8 66 745-818 353-418 (866)
65 KOG1525 Sister chromatid cohes 60.9 2.1E+02 0.0046 39.3 17.0 75 563-677 254-328 (1266)
66 KOG2160 Armadillo/beta-catenin 60.4 50 0.0011 38.5 9.8 149 426-600 132-285 (342)
67 KOG1967 DNA repair/transcripti 59.9 15 0.00033 47.0 6.1 127 984-1110 883-1018(1030)
68 smart00638 LPD_N Lipoprotein N 59.9 54 0.0012 41.2 11.2 121 1007-1132 391-524 (574)
69 PF13251 DUF4042: Domain of un 59.8 19 0.0004 38.4 5.9 117 13-165 1-132 (182)
70 COG5116 RPN2 26S proteasome re 58.6 43 0.00092 41.0 9.0 91 295-410 566-657 (926)
71 PRK13800 putative oxidoreducta 58.3 18 0.00039 48.0 6.8 88 1012-1114 778-865 (897)
72 PF14664 RICTOR_N: Rapamycin-i 57.4 1.3E+02 0.0028 35.8 13.0 182 111-319 122-337 (371)
73 KOG0166 Karyopherin (importin) 55.5 52 0.0011 40.4 9.4 110 1007-1116 235-351 (514)
74 PF12755 Vac14_Fab1_bd: Vacuol 55.1 74 0.0016 30.3 8.5 72 731-805 17-88 (97)
75 PF12460 MMS19_C: RNAPII trans 54.9 4.5E+02 0.0098 31.6 28.6 325 391-818 60-398 (415)
76 KOG1240 Protein kinase contain 54.3 2.5E+02 0.0054 37.9 15.3 113 984-1116 571-685 (1431)
77 PF10350 DUF2428: Putative dea 53.1 3.1E+02 0.0068 30.7 14.7 144 775-935 87-246 (255)
78 KOG1062 Vesicle coat complex A 52.6 1.7E+02 0.0036 37.7 13.1 219 858-1114 137-377 (866)
79 KOG1059 Vesicle coat complex A 52.4 6.3E+02 0.014 32.5 22.4 269 760-1135 163-445 (877)
80 KOG2137 Protein kinase [Signal 51.7 4.7E+02 0.01 33.5 16.7 128 299-447 368-496 (700)
81 COG5098 Chromosome condensatio 51.3 63 0.0014 40.6 9.0 132 990-1121 280-420 (1128)
82 KOG0946 ER-Golgi vesicle-tethe 50.6 6.9E+02 0.015 32.5 19.9 327 742-1117 122-492 (970)
83 PF12719 Cnd3: Nuclear condens 48.7 51 0.0011 37.7 7.7 109 1006-1119 23-146 (298)
84 PF14500 MMS19_N: Dos2-interac 48.2 1.4E+02 0.0031 33.7 10.9 62 756-819 54-116 (262)
85 KOG2025 Chromosome condensatio 48.1 48 0.001 41.7 7.5 110 1006-1116 41-155 (892)
86 KOG2137 Protein kinase [Signal 46.2 62 0.0013 40.9 8.1 126 1007-1135 347-477 (700)
87 PF01347 Vitellogenin_N: Lipop 46.1 1.7E+02 0.0037 37.0 12.6 165 295-507 378-554 (618)
88 cd00197 VHS_ENTH_ANTH VHS, ENT 45.7 35 0.00075 33.1 5.0 66 2-67 41-114 (115)
89 cd03568 VHS_STAM VHS domain fa 42.7 2.3E+02 0.0051 28.9 10.6 95 720-817 17-113 (144)
90 KOG0946 ER-Golgi vesicle-tethe 42.5 9E+02 0.02 31.5 18.5 187 782-1030 20-206 (970)
91 PLN03076 ARF guanine nucleotid 42.2 1.3E+03 0.029 33.4 23.1 325 431-796 1150-1514(1780)
92 PF12397 U3snoRNP10: U3 small 41.4 3.5E+02 0.0075 26.4 11.4 73 740-816 4-76 (121)
93 KOG1820 Microtubule-associated 41.4 7.5E+02 0.016 32.7 17.0 162 646-826 292-454 (815)
94 COG5218 YCG1 Chromosome conden 41.1 1.5E+02 0.0033 36.8 9.9 131 987-1117 26-162 (885)
95 TIGR02270 conserved hypothetic 40.7 1.9E+02 0.0042 34.8 11.1 100 995-1114 106-205 (410)
96 KOG1240 Protein kinase contain 40.3 1.2E+03 0.025 32.1 19.6 146 653-817 582-728 (1431)
97 KOG2956 CLIP-associating prote 38.7 1.9E+02 0.004 35.2 10.1 148 983-1130 299-491 (516)
98 cd03572 ENTH_epsin_related ENT 38.4 58 0.0013 32.4 5.2 67 1-67 41-118 (122)
99 KOG1061 Vesicle coat complex A 38.3 1.5E+02 0.0032 37.9 9.7 90 985-1079 27-116 (734)
100 KOG0211 Protein phosphatase 2A 37.5 2.5E+02 0.0055 36.5 11.9 164 918-1115 494-663 (759)
101 PF12765 Cohesin_HEAT: HEAT re 37.3 41 0.00088 26.9 3.2 24 1048-1071 17-40 (42)
102 PF11864 DUF3384: Domain of un 37.2 8.6E+02 0.019 29.8 25.1 109 439-578 8-117 (464)
103 KOG1077 Vesicle coat complex A 36.5 1.1E+03 0.023 30.6 20.5 32 646-677 326-357 (938)
104 PF00790 VHS: VHS domain; Int 36.5 3.4E+02 0.0074 27.3 10.7 95 719-816 21-120 (140)
105 KOG2023 Nuclear transport rece 36.5 1E+03 0.022 30.5 34.7 322 757-1131 373-750 (885)
106 KOG1525 Sister chromatid cohes 36.2 1.3E+02 0.0029 41.0 9.5 130 984-1117 272-406 (1266)
107 KOG4653 Uncharacterized conser 35.7 1.4E+02 0.003 38.7 8.9 118 1007-1124 845-972 (982)
108 KOG1991 Nuclear transport rece 35.3 1.2E+03 0.027 31.1 22.6 75 737-812 497-575 (1010)
109 PF11707 Npa1: Ribosome 60S bi 34.6 7.9E+02 0.017 28.6 15.9 115 744-875 58-189 (330)
110 PF08064 UME: UME (NUC010) dom 34.4 2.8E+02 0.006 26.8 9.1 87 414-524 5-98 (107)
111 KOG1949 Uncharacterized conser 33.4 1.1E+02 0.0024 38.7 7.3 105 1007-1115 218-330 (1005)
112 PF10274 ParcG: Parkin co-regu 33.2 1.3E+02 0.0029 32.0 7.2 73 742-816 38-111 (183)
113 cd03569 VHS_Hrs_Vps27p VHS dom 32.8 4.1E+02 0.0089 27.1 10.5 75 742-817 41-117 (142)
114 PF10274 ParcG: Parkin co-regu 32.6 1.3E+02 0.0028 32.1 7.0 85 1009-1093 38-130 (183)
115 KOG3687 Tuberin - Rap/ran-GTPa 32.3 1.4E+03 0.03 30.7 24.2 93 1003-1095 423-522 (1697)
116 KOG0211 Protein phosphatase 2A 32.3 2.2E+02 0.0048 37.1 10.2 106 1025-1131 214-321 (759)
117 KOG3723 PH domain protein Melt 30.8 9.7E+02 0.021 30.0 14.3 89 737-826 79-176 (851)
118 KOG0168 Putative ubiquitin fus 30.4 3.5E+02 0.0075 35.3 11.0 394 652-1126 215-639 (1051)
119 KOG4413 26S proteasome regulat 30.1 3E+02 0.0066 31.9 9.6 105 1006-1115 34-156 (524)
120 smart00802 UME Domain in UVSB 29.0 4.1E+02 0.009 25.8 9.2 87 414-524 5-98 (107)
121 PF05918 API5: Apoptosis inhib 28.2 78 0.0017 39.5 5.1 83 1010-1097 24-106 (556)
122 COG5656 SXM1 Importin, protein 28.1 1.5E+03 0.032 29.6 16.6 173 561-793 452-642 (970)
123 KOG2259 Uncharacterized conser 28.0 72 0.0016 39.9 4.6 88 1018-1112 382-470 (823)
124 cd03568 VHS_STAM VHS domain fa 28.0 1.2E+02 0.0026 31.0 5.7 66 3-69 42-111 (144)
125 cd03561 VHS VHS domain family; 27.6 1.3E+02 0.0028 30.2 5.8 65 3-68 42-112 (133)
126 PF12074 DUF3554: Domain of un 27.4 68 0.0015 37.4 4.3 90 1006-1098 19-114 (339)
127 PF12765 Cohesin_HEAT: HEAT re 27.3 63 0.0014 25.8 2.8 26 38-63 17-42 (42)
128 PF12719 Cnd3: Nuclear condens 27.3 1.4E+02 0.003 34.2 6.8 73 1046-1119 23-96 (298)
129 PF05804 KAP: Kinesin-associat 26.7 55 0.0012 42.0 3.6 73 1007-1079 288-361 (708)
130 smart00288 VHS Domain present 26.7 5.5E+02 0.012 25.7 10.1 94 720-816 17-113 (133)
131 cd03567 VHS_GGA VHS domain fam 26.6 7E+02 0.015 25.4 10.9 95 720-817 18-119 (139)
132 cd03561 VHS VHS domain family; 26.2 5.8E+02 0.013 25.4 10.2 77 741-818 36-116 (133)
133 PF01347 Vitellogenin_N: Lipop 26.2 1.2E+02 0.0026 38.4 6.5 117 1007-1131 429-567 (618)
134 KOG0414 Chromosome condensatio 26.1 5.3E+02 0.011 34.9 11.9 132 988-1119 291-431 (1251)
135 cd03569 VHS_Hrs_Vps27p VHS dom 25.9 1.4E+02 0.003 30.4 5.7 65 3-68 46-114 (142)
136 PF04003 Utp12: Dip2/Utp12 Fam 25.7 2.2E+02 0.0048 27.1 6.9 68 727-794 17-86 (110)
137 KOG1060 Vesicle coat complex A 25.4 2.6E+02 0.0055 36.1 8.6 83 1050-1134 393-475 (968)
138 PF12830 Nipped-B_C: Sister ch 25.4 1.5E+02 0.0032 31.6 6.1 70 564-677 4-73 (187)
139 smart00638 LPD_N Lipoprotein N 25.3 1.4E+03 0.031 28.5 21.0 163 304-510 345-513 (574)
140 KOG4653 Uncharacterized conser 25.2 2.4E+02 0.0053 36.7 8.5 53 1081-1134 841-893 (982)
141 PF09324 DUF1981: Domain of un 24.7 55 0.0012 30.4 2.3 67 1045-1114 17-86 (86)
142 COG5101 CRM1 Importin beta-rel 24.6 3.5E+02 0.0077 34.0 9.4 115 268-414 487-610 (1053)
143 KOG2025 Chromosome condensatio 23.9 1.6E+02 0.0035 37.4 6.6 71 1006-1076 82-153 (892)
144 PF14225 MOR2-PAG1_C: Cell mor 22.8 3E+02 0.0064 31.2 8.1 70 1007-1076 5-76 (262)
145 KOG1820 Microtubule-associated 22.7 2.2E+02 0.0047 37.4 7.8 69 1006-1074 368-439 (815)
146 COG5240 SEC21 Vesicle coat com 22.7 9.2E+02 0.02 30.3 12.2 169 959-1134 360-534 (898)
147 KOG0166 Karyopherin (importin) 21.2 1.7E+03 0.036 27.9 17.9 114 1009-1122 321-442 (514)
148 cd03567 VHS_GGA VHS domain fam 20.8 1.9E+02 0.004 29.5 5.4 67 2-68 42-116 (139)
149 PF06685 DUF1186: Protein of u 20.6 1.1E+03 0.024 26.6 11.8 119 782-935 33-163 (249)
150 smart00288 VHS Domain present 20.6 1.9E+02 0.0042 29.0 5.5 66 2-68 41-111 (133)
151 PF04826 Arm_2: Armadillo-like 20.5 2.4E+02 0.0053 31.7 6.8 98 1011-1113 56-160 (254)
No 1
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=8e-28 Score=272.02 Aligned_cols=315 Identities=19% Similarity=0.146 Sum_probs=281.5
Q ss_pred HHHHHHHHHHHHhhhcccchhhHHHHhhhhcccccccccccccCCCChhh----HHHHhhcCcchHHHHHHHHHHHHccC
Q 001144 800 HLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQD----AFHAFSQHAVLSFLFLEHLISALNQT 875 (1141)
Q Consensus 800 ~~r~~~l~ai~lLa~~h~~~Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~----~W~aLa~~~~l~~~vL~~LL~~L~~~ 875 (1141)
++-+....++.++...|.-.++. ... .+++|.+. .|....-.+....+++..++..+..
T Consensus 9 svlqa~qdsv~l~h~~h~~a~~~-~~~---------------s~~l~~~s~i~a~~~~~~~pl~~rdq~l~~i~~~mg~- 71 (533)
T KOG2032|consen 9 SVLEARQDSVVLLHVRHQTAKQA-VIT---------------AIDLLGRSVINAAETGATFPLKRRDQMLDYILTLMGR- 71 (533)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH-HHH---------------cccccchHHHHHHHhhcCCchhhHHHHHHHHHHhhch-
Confidence 34455566777888888888886 788 89999987 7999999999999999999988764
Q ss_pred CCccCCCCCCCCCCCCCCcccchhhHHHHHHHHHHHHhcCCcchHHHHHHhhhHHHHHHHHHHhhhccCCCC--------
Q 001144 876 PFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASS-------- 947 (1141)
Q Consensus 876 p~~~e~~~~~~~~~~~~~~~~~~~~plaAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~-------- 947 (1141)
..+ .+++.....+.+++.++-||++++|+..+. +....|-..|||||.-+|+..++++++..+
T Consensus 72 ~~~-------a~sl~~v~~~~a~~~~~~~t~vl~e~~lti--~~g~~v~~lypqlf~llLllvscvlg~k~p~~lqa~~r 142 (533)
T KOG2032|consen 72 EGF-------AESLLEVLHTQALALNACTTLVLVEPKLTI--ETGNRVMKLYPQLFSLLLLLVSCVLGLKSPDSLQALSR 142 (533)
T ss_pred hhh-------hhhhcchhhhHHHHHHHHHHHHHHHHhhhh--hcCchHHHhhHHHHHHHHHHHHHHhhccCcccHHHHHH
Confidence 111 112223334568888999999999999999 999999999999999999999999998544
Q ss_pred ---------CCCChhHHHHHHHHHHHHhhCChhHHHHHHhcCC-CC---chhhhHhhHHHHHHHHhhcCChhHHHHHHHH
Q 001144 948 ---------GQHEPLRAILTSFQAFCECVGDLEMRKILARDGE-QN---DKEKWINLIGDVAGCVSIKRPKEVQTICLIL 1014 (1141)
Q Consensus 948 ---------~~~~P~~~aleAlk~lL~~~g~~~~~~~le~~g~-W~---~~~~~~~GV~lLAram~~~~~~~~~~i~~~L 1014 (1141)
.-..||+.+..+++.+...++.+.+.+..+..++ |. ++.+|+.|++-++|.|..+.+..++.|+.++
T Consensus 143 ~~~~~al~~~~~~pc~~~tatl~cl~lqsa~e~~~~~sde~~~~w~qls~~~~h~~g~trlqr~m~~~~~~~~~~il~q~ 222 (533)
T KOG2032|consen 143 LEDVIALLKSLVAPCHSCTATLCCLILQSAEEAIQAVSDEVSRRWSQLSDNDIHRVGLTRLQRFMACVQDLEMGKILAQL 222 (533)
T ss_pred HHhHHHHHHhhhhHHHHhHHHHHHHHHHHhHHHHHHhhhcccchhhhcccCcccHHHHHHHHHHHHhhCCccHHHHHhhc
Confidence 1368899999999999999999999999999888 98 8999999999999999999999999999999
Q ss_pred HhhhcCCcccchhHHHHHHHHhhhccC-CccchHHHHHHHHhhhcCCCCchhhhhhccccCCccch---hhhhhHHHHHH
Q 001144 1015 TKSINRQQRFQREAAAAALSEFVRYSG-GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLS 1090 (1141)
Q Consensus 1015 ~~~L~s~~~~qRi~a~af~sELL~~~~-~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~---kv~~~~~~lL~ 1090 (1141)
.....|..+.+|++.+|||+|+.+.+. +..+++..++..|.+..+|||..+|.++.|||||++.+ |++.|.++++.
T Consensus 223 ~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ld 302 (533)
T KOG2032|consen 223 LSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLD 302 (533)
T ss_pred ccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHH
Confidence 999999999999999999999999998 77788999999999999999999999999999999876 99999999999
Q ss_pred HHHhhccCCC-hhHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcccccc
Q 001144 1091 VILALLDDLD-ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQHE 1140 (1141)
Q Consensus 1091 all~~l~d~~-~~vvleam~~L~~lL~~l~~~~~~~~l~~ia~rlR~l~~~ 1140 (1141)
+++.|++|.+ ++|++|||.+|.++++.....++++++++|+.|+|+|+.+
T Consensus 303 aii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~s 353 (533)
T KOG2032|consen 303 AIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDS 353 (533)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHh
Confidence 9999999954 4999999999999999999999999999999999999864
No 2
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=3.3e-08 Score=113.96 Aligned_cols=473 Identities=25% Similarity=0.199 Sum_probs=296.8
Q ss_pred hccchhHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCHHHHHHHHHHHhccCCCCCcCCchHHHHHHHHHHHHHhhhhccc
Q 001144 428 HVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTV 507 (1141)
Q Consensus 428 ~~kd~~lK~s~l~si~~i~~al~~~~~~~~~f~f~~k~eLl~~l~~~i~~Ep~~~L~s~~~~ll~~r~~a~~ait~L~~L 507 (1141)
+..+.+.|++-+.+....+.++....+.+.-|..+++++.++++...|..|-.-. ..-+...+...+..+++.++-.
T Consensus 22 h~~h~~a~~~~~~s~~l~~~s~i~a~~~~~~~pl~~rdq~l~~i~~~mg~~~~a~---sl~~v~~~~a~~~~~~~t~vl~ 98 (533)
T KOG2032|consen 22 HVRHQTAKQAVITAIDLLGRSVINAAETGATFPLKRRDQMLDYILTLMGREGFAE---SLLEVLHTQALALNACTTLVLV 98 (533)
T ss_pred HHHHHHHHHHHHHcccccchHHHHHHHhhcCCchhhHHHHHHHHHHhhchhhhhh---hhcchhhhHHHHHHHHHHHHHH
Confidence 4567778999999999999999988888888999999999999999988753211 1122234677888999999888
Q ss_pred CCCCChhHHHHHHHHhhhccccCCCCCCchHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHhhhhhhcCChhHHHhh
Q 001144 508 EPKLTIETRNHVMKATLGFFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRR 587 (1141)
Q Consensus 508 ~P~l~~e~~~~ll~~clsv~~lP~~~~~~~~~l~~~l~~ll~~ll~~~~~~~~~~~~~Lq~il~~L~pWl~S~k~~EReR 587 (1141)
+|.+..+++..+++. |+.+-.+ + ++.....|.....++-+++
T Consensus 99 e~~lti~~g~~v~~l------------------ypqlf~l-------------------l-Lllvscvlg~k~p~~lqa~ 140 (533)
T KOG2032|consen 99 EPKLTIETGNRVMKL------------------YPQLFSL-------------------L-LLLVSCVLGLKSPDSLQAL 140 (533)
T ss_pred HHhhhhhcCchHHHh------------------hHHHHHH-------------------H-HHHHHHHhhccCcccHHHH
Confidence 888877777666432 3322211 1 2223333443222222233
Q ss_pred HHHHHHHHHHHHHHhccccccccCCCCCcccccchhhccccCCCCCCCccCCCchhhhhhhhHHH-HhhcCccCCChhHH
Q 001144 588 SCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVI-MYLPRCADTDSEVR 666 (1141)
Q Consensus 588 A~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~f~~~p~~~~~p~~~~~~lG~lvg-~l~p~C~D~~~~ir 666 (1141)
-+..+...+++-.-. .| ++... +..++|.+.| ..+..|+|-++.+-
T Consensus 141 ~r~~~~~al~~~~~~----pc-----------~~~ta------------------tl~cl~lqsa~e~~~~~sde~~~~w 187 (533)
T KOG2032|consen 141 SRLEDVIALLKSLVA----PC-----------HSCTA------------------TLCCLILQSAEEAIQAVSDEVSRRW 187 (533)
T ss_pred HHHHhHHHHHHhhhh----HH-----------HHhHH------------------HHHHHHHHHhHHHHHHhhhcccchh
Confidence 333344444422210 11 00111 2448999999 88999999999988
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCCCCCChhhhhhhhcchhHHHHHhhcCCCCCChhHHHH---HHHHHHhhCCh--HHHH
Q 001144 667 KISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFNR---IVSSVCILLTK--DELV 741 (1141)
Q Consensus 667 ~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~---i~~~~~k~L~~--~el~ 741 (1141)
.++.....|...+.-+++- -+.-.+ ......+..+ . ...+...++..... +++...+..-+ .-+.
T Consensus 188 ~qls~~~~h~~g~trlqr~-m~~~~~---~~~~~il~q~---~---ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~ 257 (533)
T KOG2032|consen 188 SQLSDNDIHRVGLTRLQRF-MACVQD---LEMGKILAQL---L---SSITSEKENGRITDIAFFAELKRPKELDKTGLLG 257 (533)
T ss_pred hhcccCcccHHHHHHHHHH-HHhhCC---ccHHHHHhhc---c---cccchhcccchHHHHHHHHHHhCcccccccccHH
Confidence 8877777777777666541 111001 1111111111 0 01111122222222 33333444333 5677
Q ss_pred HHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhcccchhh
Q 001144 742 ATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIV 821 (1141)
Q Consensus 742 ~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~h~~~Vv 821 (1141)
+++..+.+...|++.....-|+.-|-......-.+...- ++.++++|+..|....+..+ ++++|.+|+.--+..+.
T Consensus 258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th-~~~~ldaii~gL~D~~~~~V---~leam~~Lt~v~~~~~~ 333 (533)
T KOG2032|consen 258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH-KTTQLDAIIRGLYDDLNEEV---QLEAMKCLTMVLEKASN 333 (533)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh-HHHHHHHHHHHHhcCCccHH---HHHHHHHHHHHHHhhhh
Confidence 899999999999987666666655555555433344233 88999999999988887555 45566666655444444
Q ss_pred HHHHhhhhcccccccccccccCCCChhh----HHHHhhcCcchHHHHHHHHHHHHccCCCccCC-----CCCCCCCCCCC
Q 001144 822 FNEVLATAGKDIVTKDISRLRGGWPMQD----AFHAFSQHAVLSFLFLEHLISALNQTPFVKGD-----MEKGDYSSHSA 892 (1141)
Q Consensus 822 ~~~LL~~~~~~~~~~d~~~~~~plP~d~----~W~aLa~~~~l~~~vL~~LL~~L~~~p~~~e~-----~~~~~~~~~~~ 892 (1141)
. .|- .+++|.+- +|..--.+-..+.-++-.-|.++..++..+.. ++-..+.++-+
T Consensus 334 ~-~l~---------------~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~ 397 (533)
T KOG2032|consen 334 D-DLE---------------SYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQ 397 (533)
T ss_pred c-chh---------------hhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeC
Confidence 3 444 78888873 99998888899999999999999998876542 13334556666
Q ss_pred CcccchhhH--HHHHHHHHHHHhcCCcchHHHHHHhhh---HHHHHHHHHHhh---hccCCCCCCCCh--hHHHHHHHHH
Q 001144 893 DTWIDDDIL--QAAILALTAFFRGGGKVGKKAVEKSYA---PVLAALTLQLGS---CHGLASSGQHEP--LRAILTSFQA 962 (1141)
Q Consensus 893 ~~~~~~~~p--laAt~aL~Ell~~~~~~~~~av~~~fp---~Lf~aLL~ql~~---~~~~~~~~~~~P--~~~aleAlk~ 962 (1141)
+++ | .+|-++..-+..-+ -+++++..+|| +..++ -+|.-| |+++. +..| .-....+.+.
T Consensus 398 d~~-----p~va~ACr~~~~~c~p~--l~rke~~~~~q~~ld~~~~-~~q~Fyn~~c~~L~---~i~~d~l~~~~t~~~~ 466 (533)
T KOG2032|consen 398 DPN-----PYVARACRSELRTCYPN--LVRKELYHLFQESLDTDMA-RFQAFYNQWCIQLN---HIHPDILMLLLTEDQH 466 (533)
T ss_pred CCC-----hHHHHHHHHHHHhcCch--hHHHHHHHHHhhhhHHhHH-HHHHHHHHHHHHHh---hhCHHHHHHHHHhchh
Confidence 554 5 67778888877777 99999999999 44444 333333 33443 2344 4567888888
Q ss_pred HHHhhC-ChhHHHHHHhcCCCC---chhhhHhhHHHHHHHHhhcCChhHHHHHHHHH
Q 001144 963 FCECVG-DLEMRKILARDGEQN---DKEKWINLIGDVAGCVSIKRPKEVQTICLILT 1015 (1141)
Q Consensus 963 lL~~~g-~~~~~~~le~~g~W~---~~~~~~~GV~lLAram~~~~~~~~~~i~~~L~ 1015 (1141)
+|++++ ...+...+.....|+ ....+.-|+..|+.++...+.+..+.+.....
T Consensus 467 ~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~ 523 (533)
T KOG2032|consen 467 IFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSAR 523 (533)
T ss_pred heecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHH
Confidence 888877 344556666677788 44566677778888888776555555444433
No 3
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=0.0049 Score=78.56 Aligned_cols=697 Identities=16% Similarity=0.154 Sum_probs=368.2
Q ss_pred HHHHHHHhcccCCccchh-------hHHHHHHHHhhcCHHHHHHHHHHHHhhhccccchhhhccccCcccccchHhHHHH
Q 001144 321 KIDWMYKQANIAIPTNRL-------GLAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDIHAA 393 (1141)
Q Consensus 321 ~L~~ll~~~~~~~~~ere-------G~A~~~G~~A~~Hld~vL~~Le~~~k~~~~~~~~~~~~~~k~~~~~~e~~~~ks~ 393 (1141)
-|+.++..++..++..|| ++...+|-.-+.|+|+.+..+..=. .|.++ .+|.+
T Consensus 119 ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~---------------~d~s~-----~vr~~ 178 (1075)
T KOG2171|consen 119 LLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTM---------------TDPSS-----PVRVA 178 (1075)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhc---------------cCCcc-----hHHHH
Confidence 344455555555666663 5677788888889998887764321 12221 38999
Q ss_pred HHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHH---HhhccchhHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCHHHHH
Q 001144 394 LALMYGYAAKYAP--STVIEARIDALVGTNMLSR---LLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLL 468 (1141)
Q Consensus 394 l~l~YG~va~~ap--~~~l~~rve~~I~~~i~~~---~~~~kd~~lK~s~l~si~~i~~al~~~~~~~~~f~f~~k~eLl 468 (1141)
-...+|.++.+-+ +... .++- ..+++++.. .....|...=...+.++..+.....+ |.=++-.+++
T Consensus 179 a~rA~~a~~~~~~~~~~~~-~~~~-~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk-------~l~~~l~~ii 249 (1075)
T KOG2171|consen 179 AVRALGAFAEYLENNKSEV-DKFR-DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK-------LLRPHLSQII 249 (1075)
T ss_pred HHHHHHHHHHHhccchHHH-HHHH-HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH-------HHHHHHHHHH
Confidence 9999999999886 3322 3332 222323222 22223332224445555555544222 2223456889
Q ss_pred HHHHHHhccCCCCCcCCchHHHHHHHHHHHHHhhhhcccCCCCChhHHHHHHHHhh-hccccCCCCC-------------
Q 001144 469 DYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATL-GFFALPNDPI------------- 534 (1141)
Q Consensus 469 ~~l~~~i~~Ep~~~L~s~~~~ll~~r~~a~~ait~L~~L~P~l~~e~~~~ll~~cl-sv~~lP~~~~------------- 534 (1141)
+.++.+.+....|. + +|+.|+..++.+++--|...-. ...+....+ -++.++.+..
T Consensus 250 ~~~l~Ia~n~~l~~---~------~R~~ALe~ivs~~e~Ap~~~k~-~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~de 319 (1075)
T KOG2171|consen 250 QFSLEIAKNKELEN---S------IRHLALEFLVSLSEYAPAMCKK-LALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDE 319 (1075)
T ss_pred HHHHHHhhcccccH---H------HHHHHHHHHHHHHHhhHHHhhh-chhhhccHHHHHHHhcCCcccchhhcccccccc
Confidence 99999888766554 4 9999999999998764433222 222444433 3333332211
Q ss_pred CchHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHhhhhhhcCChhHHHhhHHHHHHHHHHHHHHhccccccccCCCC
Q 001144 535 DVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHG 614 (1141)
Q Consensus 535 ~~~~~l~~~l~~ll~~ll~~~~~~~~~~~~~Lq~il~~L~pWl~S~k~~EReRA~~~~~~lL~~~~~~~~~~~c~~~~~~ 614 (1141)
++.++-+..-.+.++-+=...+- -.-+--+++++...++|.+-.+|.-|+..++.+-. | |
T Consensus 320 d~~~~~~~~A~~~lDrlA~~L~g-----~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~E--------G-c------ 379 (1075)
T KOG2171|consen 320 DDEETPYRAAEQALDRLALHLGG-----KQVLPPLFEALEAMLQSTEWKERHAALLALSVIAE--------G-C------ 379 (1075)
T ss_pred ccccCcHHHHHHHHHHHHhcCCh-----hhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHc--------c-c------
Confidence 11122344444555544444432 12334478999999999999999988887654433 2 2
Q ss_pred CcccccchhhccccCCCCCCCccCCCchhhhhhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCC
Q 001144 615 SCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGID 694 (1141)
Q Consensus 615 ~~~~~~~l~~~~~~~f~~~p~~~~~p~~~~~~lG~lvg~l~p~C~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~ 694 (1141)
-+.- .+.+-+.+-+..+.-.||++.||..|..||..+= . ....+.
T Consensus 380 -------~~~m------------------~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~s---t------dl~p~i- 424 (1075)
T KOG2171|consen 380 -------SDVM------------------IGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMS---T------DLQPEI- 424 (1075)
T ss_pred -------HHHH------------------HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhh---h------hhcHHH-
Confidence 1111 1156677888889999999999999999998663 1 011000
Q ss_pred hhhh-hhhhcchhHHHHHhhcCCCCCChhHHHHHHHH---HHhhCChHHHHHHHHHHH----HhccCCCchhH-HHHHHH
Q 001144 695 LELS-YGALSSLEDVIAILRSDASIDPSEVFNRIVSS---VCILLTKDELVATLHSCT----TAICDRTKQSA-EGAIQA 765 (1141)
Q Consensus 695 ~~~~-~~~l~~l~~l~~~~~~~~~~~~~~~~~~i~~~---~~k~L~~~el~~li~tll----~~L~d~~~~~~-~~A~~~ 765 (1141)
+.. .+.+. .-++++ .++. ....+-.+.+.. |....+.+++...+-.++ .-|..+....+ ..+...
T Consensus 425 -qk~~~e~l~--~aL~~~-ld~~--~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvta 498 (1075)
T KOG2171|consen 425 -QKKHHERLP--PALIAL-LDST--QNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTA 498 (1075)
T ss_pred -HHHHHHhcc--HHHHHH-hccc--CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 000 00110 012221 1111 222333333332 345556666555544444 44555555444 555556
Q ss_pred HHHHHHhhccccchhhHhHHHHHHHHHhhhcCc---HHHHHHHHHHHHHhhh------cc--cchhhHHHHhhhhccccc
Q 001144 766 VVEFVTKRGNELSETDVSRTTQSLLSAAVHITD---KHLRLETLGAISCLAE------NT--NSKIVFNEVLATAGKDIV 834 (1141)
Q Consensus 766 L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i~~---~~~r~~~l~ai~lLa~------~h--~~~Vv~~~LL~~~~~~~~ 834 (1141)
|-.+=...+.++ .....+++-.+..-|..... ...|-.++..+++.+. .| .++++. .++ .+...+.
T Consensus 499 IasvA~AA~~~F-~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliq-ll~-~~~~~~~ 575 (1075)
T KOG2171|consen 499 IASVADAAQEKF-IPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQ-LLL-ELQGSDQ 575 (1075)
T ss_pred HHHHHHHHhhhh-HhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHH-HHH-hhcccch
Confidence 666666677777 45588888888888877773 3455677888888873 33 377884 666 2322233
Q ss_pred ccccccccCCCChh-hHHHHhhcC-cchHHHHHHHHHHHHccCCCccCC-C---CC-----C-CCC-CCCC--C-cccch
Q 001144 835 TKDISRLRGGWPMQ-DAFHAFSQH-AVLSFLFLEHLISALNQTPFVKGD-M---EK-----G-DYS-SHSA--D-TWIDD 898 (1141)
Q Consensus 835 ~~d~~~~~~plP~d-~~W~aLa~~-~~l~~~vL~~LL~~L~~~p~~~e~-~---~~-----~-~~~-~~~~--~-~~~~~ 898 (1141)
..|-|++.+..++= ++=|++|.| .+..+.||.-|+.-.+.+|-+.-. . +. + ++- .... . -+.+-
T Consensus 576 ~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsv 655 (1075)
T KOG2171|consen 576 DDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSV 655 (1075)
T ss_pred hhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehh
Confidence 33433333333321 256777776 477788888888877766633210 0 00 0 000 0000 0 00010
Q ss_pred hhH-HHHHHHHHHHHhcC-----------------------CcchHHHHHHhhhHHHHHHHH---HHh-hhccC----CC
Q 001144 899 DIL-QAAILALTAFFRGG-----------------------GKVGKKAVEKSYAPVLAALTL---QLG-SCHGL----AS 946 (1141)
Q Consensus 899 ~~p-laAt~aL~Ell~~~-----------------------~~~~~~av~~~fp~Lf~aLL~---ql~-~~~~~----~~ 946 (1141)
+.- -.|+.+|.++=... -+.+|.+....-|+++.+... +.- |...+ .+
T Consensus 656 l~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~ 735 (1075)
T KOG2171|consen 656 LDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRP 735 (1075)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 000 12333443321111 113555566666777766654 110 00000 00
Q ss_pred ------CCCCCh--hHHHHHHHHHHHHhhC----------------------------ChhHHHHHHhcCCC------C-
Q 001144 947 ------SGQHEP--LRAILTSFQAFCECVG----------------------------DLEMRKILARDGEQ------N- 983 (1141)
Q Consensus 947 ------~~~~~P--~~~aleAlk~lL~~~g----------------------------~~~~~~~le~~g~W------~- 983 (1141)
.....+ +...+++|-.-+...| .-+.-..-+-+..= +
T Consensus 736 ~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~ 815 (1075)
T KOG2171|consen 736 ALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQ 815 (1075)
T ss_pred HHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhh
Confidence 001111 2233333333333333 11111000000000 0
Q ss_pred chhhhHhhHHHHHHHHhhcC---ChhHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccC-CccchHHHHHHHHhhhcC
Q 001144 984 DKEKWINLIGDVAGCVSIKR---PKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSG-GFDSLLEQMVEALCRHVS 1059 (1141)
Q Consensus 984 ~~~~~~~GV~lLAram~~~~---~~~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~-~~~~l~~~~l~~L~~~l~ 1059 (1141)
+..-+..++..+++.+.... .+.+-++.-++.+++.+..--.|.-|++.+.+++.... .....-+..+-.+.+.+.
T Consensus 816 d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~ 895 (1075)
T KOG2171|consen 816 DAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQ 895 (1075)
T ss_pred hHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcC
Confidence 11122333333444433333 34455666667777766555449999999999999876 333333458888999999
Q ss_pred CCCchhhhhhccccCCccchhhhhhHHHH---HHHHHhhccC---C---ChhHHHHHHHHHHHHhccCCC
Q 001144 1060 DESPTVRGLCLRGLVQIPSIHIHQYATQV---LSVILALLDD---L---DESVQLTAVSCLLTILKSSSK 1120 (1141)
Q Consensus 1060 D~~~~VR~lslrGLgnl~~~kv~~~~~~l---L~all~~l~d---~---~~~vvleam~~L~~lL~~l~~ 1120 (1141)
|++|.||.-+.-|+|-++.+-.+-|++-+ ++.+..-+.. . +...+--|..++++++.+=..
T Consensus 896 d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~ 965 (1075)
T KOG2171|consen 896 DSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPN 965 (1075)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999988776222244333 3333333322 2 224555677788888775443
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=4.3e-05 Score=96.54 Aligned_cols=405 Identities=17% Similarity=0.207 Sum_probs=248.0
Q ss_pred hhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCChhhhhhhhcchhHHHHHhhcCCCCCChhHHH
Q 001144 646 CLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFN 725 (1141)
Q Consensus 646 ~lG~lvg~l~p~C~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~ 725 (1141)
-|+++++ .|. ++++|+.|.==.-.++. ... .+.. .+....+. ..++.+........-...+-
T Consensus 40 ~L~~i~~----~~~--~p~~Rq~aaVl~Rkl~~--~~w---~~l~-----~e~~~sik--s~lL~~~~~E~~~~vr~k~~ 101 (1075)
T KOG2171|consen 40 ALAHILA----TSA--DPQVRQLAAVLLRKLLT--KHW---SRLS-----AEVQQSIK--SSLLEIIQSETEPSVRHKLA 101 (1075)
T ss_pred HHHHHHh----cCC--ChHHHHHHHHHHHHHHH--HHh---hcCC-----HHHHHHHH--HHHHHHHHhccchHHHHHHH
Confidence 5666666 344 45899887654444441 111 1111 11111111 22333333333322222223
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhcCcHHHHHHH
Q 001144 726 RIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLET 805 (1141)
Q Consensus 726 ~i~~~~~k~L~~~el~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i~~~~~r~~~ 805 (1141)
+++..+++.+-+++-.+++.-++++..+++.+--+.|-.+|..+-+..|..+..- +.++.+-+-+-|..-+.+ +|...
T Consensus 102 dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~-~~~l~~lf~q~~~d~s~~-vr~~a 179 (1075)
T KOG2171|consen 102 DVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPH-LDDLLRLFSQTMTDPSSP-VRVAA 179 (1075)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchh-HHHHHHHHHHhccCCcch-HHHHH
Confidence 3444556666666888888899999999988888999999999999999999555 888888888888888888 99999
Q ss_pred HHHHHHhhhcccchhhHHHHhhhhcccccccccccccCCCChhhHHHHhhcCcchHHHHHHHHHHHHccCCCccCCCCCC
Q 001144 806 LGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKG 885 (1141)
Q Consensus 806 l~ai~lLa~~h~~~Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~aLa~~~~l~~~vL~~LL~~L~~~p~~~e~~~~~ 885 (1141)
.+|+...+..+..+.. .|+.++ .++..++..++.--...++ .
T Consensus 180 ~rA~~a~~~~~~~~~~----------------------------~~~~~~-------~llP~~l~vl~~~i~~~d~---~ 221 (1075)
T KOG2171|consen 180 VRALGAFAEYLENNKS----------------------------EVDKFR-------DLLPSLLNVLQEVIQDGDD---D 221 (1075)
T ss_pred HHHHHHHHHHhccchH----------------------------HHHHHH-------HHhHHHHHHhHhhhhccch---H
Confidence 9999999888752111 111111 1122222222211000000 0
Q ss_pred CCCCCCCCcccchhhHHHHHHHHHHHHhcCCcchHHHHHHhhhHHHHHHHHHHhhhccCCCCCCCChhH-HHHHHHHHHH
Q 001144 886 DYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLR-AILTSFQAFC 964 (1141)
Q Consensus 886 ~~~~~~~~~~~~~~~plaAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~-~aleAlk~lL 964 (1141)
-.-.+..+|-|++.... +....++-+++ .+.+++...-++. ++.| .|++-+-++.
T Consensus 222 --------------~a~~~l~~l~El~e~~p----k~l~~~l~~ii-~~~l~Ia~n~~l~-----~~~R~~ALe~ivs~~ 277 (1075)
T KOG2171|consen 222 --------------AAKSALEALIELLESEP----KLLRPHLSQII-QFSLEIAKNKELE-----NSIRHLALEFLVSLS 277 (1075)
T ss_pred --------------HHHHHHHHHHHHHhhch----HHHHHHHHHHH-HHHHHHhhccccc-----HHHHHHHHHHHHHHH
Confidence 02334555555555431 11122222221 1223333222221 1122 1222222222
Q ss_pred Hhh----------CCh------hHHHHHHhcCCCC---------chhhhHhhHHHHHHHHhhcCCh-hHHHHHHHHHhhh
Q 001144 965 ECV----------GDL------EMRKILARDGEQN---------DKEKWINLIGDVAGCVSIKRPK-EVQTICLILTKSI 1018 (1141)
Q Consensus 965 ~~~----------g~~------~~~~~le~~g~W~---------~~~~~~~GV~lLAram~~~~~~-~~~~i~~~L~~~L 1018 (1141)
+.. |.. .+...++.+..|. ....+.-|...|.|.-++-.+. ..+.++.++-.++
T Consensus 278 e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l 357 (1075)
T KOG2171|consen 278 EYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAML 357 (1075)
T ss_pred HhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHh
Confidence 210 000 1112222245675 2347888899899876665654 4788999999999
Q ss_pred cCCcccchhHHHHHHHHhhhccC-CccchHHHHHHHHhhhcCCCCchhhhhhccccCCccch---hh-hhhHHHHHHHHH
Q 001144 1019 NRQQRFQREAAAAALSEFVRYSG-GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HI-HQYATQVLSVIL 1093 (1141)
Q Consensus 1019 ~s~~~~qRi~a~af~sELL~~~~-~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~---kv-~~~~~~lL~all 1093 (1141)
+|++-.+|-+|.-.++-.---+. .-...+++++....++++||.|.||..++-.+|+++.. .+ ++|...++++++
T Consensus 358 ~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~ 437 (1075)
T KOG2171|consen 358 QSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALI 437 (1075)
T ss_pred cCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHH
Confidence 99999999988866665443332 22234577999999999999999999999999999776 44 445567777999
Q ss_pred hhccCCCh-hHHHHHHHHHHHHhccCCCCCccchHHHHHH
Q 001144 1094 ALLDDLDE-SVQLTAVSCLLTILKSSSKDAVEPILLNLSV 1132 (1141)
Q Consensus 1094 ~~l~d~~~-~vvleam~~L~~lL~~l~~~~~~~~l~~ia~ 1132 (1141)
..+|++.. .|..-|-..|-+..+..++.-++|++=.+-.
T Consensus 438 ~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~ 477 (1075)
T KOG2171|consen 438 ALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLME 477 (1075)
T ss_pred HHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 99998666 8889999999999999999999999888766
No 5
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.66 E-value=0.38 Score=60.67 Aligned_cols=271 Identities=15% Similarity=0.165 Sum_probs=153.6
Q ss_pred HHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhcCcHHHHHHHHHHHHHhh---hccc
Q 001144 741 VATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLA---ENTN 817 (1141)
Q Consensus 741 ~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa---~~h~ 817 (1141)
+..+-.+..=++..+...-.+.-..++.+++..|..+ + ++.++.+..+++..-.+.-.+.+..|+..|+ ...|
T Consensus 650 ~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~-~---~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~p 725 (1233)
T KOG1824|consen 650 TEILPELASFLRKNQRALRLATLTALDKLVKNYSDSI-P---AELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQP 725 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-c---HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccc
Confidence 3333333333333333344666677899999998888 2 4688899999887777666666666665554 3333
Q ss_pred chhhHHHHhhhhcccccccccccccCCCChhhHHHHhhcCcchHHHHHHHHHHHHccCCCccCCCCCCCCCCCCCCcccc
Q 001144 818 SKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWID 897 (1141)
Q Consensus 818 ~~Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~aLa~~~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~ 897 (1141)
. .++ .....+|+.++..++. |..
T Consensus 726 s-----~l~--------------------------------~~~~~iL~~ii~ll~S-pll------------------- 748 (1233)
T KOG1824|consen 726 S-----SLL--------------------------------KISNPILDEIIRLLRS-PLL------------------- 748 (1233)
T ss_pred H-----HHH--------------------------------HHhhhhHHHHHHHhhC-ccc-------------------
Confidence 2 112 2345677777776662 211
Q ss_pred hhhHHHHHHHHHHHHhcCCcchHHHHHHhhhHH-HHHHHHHHhhhccCCCCCCCChhHHHHHHHHHHHHhhCChhHHHHH
Q 001144 898 DDILQAAILALTAFFRGGGKVGKKAVEKSYAPV-LAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKIL 976 (1141)
Q Consensus 898 ~~~plaAt~aL~Ell~~~~~~~~~av~~~fp~L-f~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~lL~~~g~~~~~~~l 976 (1141)
...|..++-.+ +...|..-+|.+ +.-|+.-+ .+--++++..
T Consensus 749 ---qg~al~~~l~~-------f~alV~t~~~~l~y~~l~s~l--------------------------t~PV~~~~~~-- 790 (1233)
T KOG1824|consen 749 ---QGGALSALLLF-------FQALVITKEPDLDYISLLSLL--------------------------TAPVYEQVTD-- 790 (1233)
T ss_pred ---cchHHHHHHHH-------HHHHHhcCCCCccHHHHHHHH--------------------------cCCccccccc--
Confidence 22344444432 223444455555 33332222 1111222211
Q ss_pred HhcCCCCchhhhHhhHHHHHHHHh---hcCChhHHHHHHHHHhhhcCCc--ccchhHHHHHHHHhhhccCCccchHHHHH
Q 001144 977 ARDGEQNDKEKWINLIGDVAGCVS---IKRPKEVQTICLILTKSINRQQ--RFQREAAAAALSEFVRYSGGFDSLLEQMV 1051 (1141)
Q Consensus 977 e~~g~W~~~~~~~~GV~lLAram~---~~~~~~~~~i~~~L~~~L~s~~--~~qRi~a~af~sELL~~~~~~~~l~~~~l 1051 (1141)
..|-+.-.-+|++.+ ...+..-+.+...+..-++++. ++-|+.|+..|.|+=+..+ .. -...+-
T Consensus 791 ---------~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~-~s-~~~e~~ 859 (1233)
T KOG1824|consen 791 ---------GLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKD-LS-PQNELK 859 (1233)
T ss_pred ---------chhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCC-CC-cchhhH
Confidence 123333333444433 3344567788888888887554 4566777777778755543 11 112255
Q ss_pred HHHhhhcCCCCchhhhhhccccCCccchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCCCCccch
Q 001144 1052 EALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPI 1126 (1141)
Q Consensus 1052 ~~L~~~l~D~~~~VR~lslrGLgnl~~~kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~l~~~~~~~~ 1126 (1141)
....+.++.|+..|+..+-.+||+++.|....|.|.+|.-+-+- ..=..--+..|..++....-....|.
T Consensus 860 ~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sq-----pk~QyLLLhSlkevi~~~svd~~~~~ 929 (1233)
T KOG1824|consen 860 DTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQ-----PKRQYLLLHSLKEVIVSASVDGLKPY 929 (1233)
T ss_pred HHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcc-----hHhHHHHHHHHHHHHHHhccchhhhh
Confidence 57888999999999999999999999998888877776655442 22222234555555554444433333
No 6
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.21 E-value=1.2 Score=56.35 Aligned_cols=920 Identities=14% Similarity=0.124 Sum_probs=420.1
Q ss_pred hhhhhcccccchhHHHHHHHhhhcCCCchhhh-cchHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhcccccCcccccce
Q 001144 3 LLNKCRLKEEHLSVGALYVLKHLLPRSSEAWH-SKRPLLLEAVKSLLDEQNLAVQKAISELIVVMASHCYLIGPSGELFV 81 (1141)
Q Consensus 3 ll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~-~k~~~i~~~vk~~l~d~~~kVr~al~~~I~ama~~~yl~~~~g~~~i 81 (1141)
|+.||.+++...|.-|.+=|-.=+|.+.-.++ +--+-+++.+-.+|.|.|..|..--++.+.-++.+ -++.=+
T Consensus 10 LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsK------vke~~l 83 (1233)
T KOG1824|consen 10 LLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSK------VKEDQL 83 (1233)
T ss_pred HHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhh------chHHHH
Confidence 67899999999999998877776775544443 34567777777888999999988777776666633 233346
Q ss_pred eeeeccccccCccccccccccccCCCCCchHHHHHHHHHHHHHhccchh---------hhHhhHHHHHhhccc-ccccch
Q 001144 82 EYLVRHCALSDQKKYVNESSKVKIGAFCPTELRAICEKGLLLLTITIPE---------MQHILWPLLLKMIIP-RAYTSA 151 (1141)
Q Consensus 82 ~fiv~q~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~~~L~ll~ttv~~---------m~~vLWP~LL~~i~p-~~yT~a 151 (1141)
++++...+-. -....++.|.++.=+|+++-.-++. .=.-+-|.|-.++.- .++.++
T Consensus 84 e~~ve~L~~~--------------~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai 149 (1233)
T KOG1824|consen 84 ETIVENLCSN--------------MLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAI 149 (1233)
T ss_pred HHHHHHHhhh--------------hccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhh
Confidence 7777654421 0113346677777777665443331 112334444445444 223223
Q ss_pred hhhHHHHHHHHHhhhcCCCCCccccccCCCCCCCHHHHHHHHHHHhcCcccc-hhhHHHHHHHHHhhCCCCCcchhhhHH
Q 001144 152 AATVCRCISELCRHRSSSSNVMLSECKARDDIPNPEELFARLVVLLHDPLAR-EQQATQILMVLYYLSPLFPTNIDLFWQ 230 (1141)
Q Consensus 152 l~~ick~l~~La~k~~~~~~~~~i~~~~~~~lPsp~~llaRllvl~~~P~~~-~~~g~~~L~lL~~l~~~ih~~l~~~W~ 230 (1141)
.-.+|-.+..+..|.. .+..+|+ ..++.=++--+++|-.- .++..-+|..|-...+. +...
T Consensus 150 ~~e~lDil~d~lsr~g----~ll~~fh--------~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~------~ly~ 211 (1233)
T KOG1824|consen 150 KCEVLDILADVLSRFG----TLLPNFH--------LSILKCLLPQLQSPRLAVRKKAITALGHLASSCNR------DLYV 211 (1233)
T ss_pred HHHHHHHHHHHHHhhc----ccCcchH--------HHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH------HHHH
Confidence 2223333333222211 1222232 12222222223333211 24455555555444432 5677
Q ss_pred HhhhhhhhcccccccCCCCcchHhhHHHHHHHHHHHhhhhhccc-hHHHHHHHHHHhhhccCCCChhhHHHHHHHHHHHH
Q 001144 231 DEIPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAESLDVVQET-DWLISLGNAFTEQYVLYTPDDDHSALLHRCLGILL 309 (1141)
Q Consensus 231 ~~IP~Ll~~L~~~~~~~~~~~~q~~We~~Ll~fL~~sl~~i~d~-~W~~~L~~el~~ql~~y~~~~~eK~fL~k~lG~~L 309 (1141)
.-|..|+.-|.+.+.+ .--..+=..|-...+.+=...... ..+.-+-...++-. -.++++-+-+..+++|..|
T Consensus 212 ~li~~Ll~~L~~~~q~----~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~--e~~dDELrE~~lQale~fl 285 (1233)
T KOG1824|consen 212 ELIEHLLKGLSNRTQM----SATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKI--EEDDDELREYCLQALESFL 285 (1233)
T ss_pred HHHHHHHhccCCCCch----HHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhccc--ccCcHHHHHHHHHHHHHHH
Confidence 8888888888765321 111233233333222221111110 12222222222211 1233444667778888888
Q ss_pred hhcCCh--hHHHHHHHHHHHh----cccC-------------------------Ccc-----chhhHHHHHHHHhhcCHH
Q 001144 310 QKVADR--NYVCDKIDWMYKQ----ANIA-------------------------IPT-----NRLGLAKAMGLVAASHLD 353 (1141)
Q Consensus 310 ~~~~~~--~~V~~~L~~ll~~----~~~~-------------------------~~~-----ereG~A~~~G~~A~~Hld 353 (1141)
..|... -++.+-+..++.- +||. ++. -|..-|+|+--.=++|.+
T Consensus 286 ~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E 365 (1233)
T KOG1824|consen 286 RRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLE 365 (1233)
T ss_pred HhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHH
Confidence 877432 1222223333321 1211 110 245678888777788888
Q ss_pred HHHHHHHHHHhhhccccchhhhccccCcccccchHhHHHHHHHHHHHHHhcCCchhHHHHH-HHHHHHHHHHHHhhccch
Q 001144 354 AVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARI-DALVGTNMLSRLLHVRHH 432 (1141)
Q Consensus 354 ~vL~~Le~~~k~~~~~~~~~~~~~~k~~~~~~e~~~~ks~l~l~YG~va~~ap~~~l~~rv-e~~I~~~i~~~~~~~kd~ 432 (1141)
-+.+..+..+-. ..+.||++- |.+|+.++-.|=..-.+.++-. .+. +.+ -+.+ ..-+
T Consensus 366 ~L~~~~q~l~p~--------lI~RfkERE-----EnVk~dvf~~yi~ll~qt~~~~--~~~~d~d----~~e~---~g~~ 423 (1233)
T KOG1824|consen 366 MLPDFYQTLGPA--------LISRFKERE-----ENVKADVFHAYIALLKQTRPVI--EVLADND----AMEQ---GGTP 423 (1233)
T ss_pred HHHHHHHHhCHH--------HHHHHHHHh-----hhHHHHHHHHHHHHHHcCCCCc--ccccCch----hhhc---cCCc
Confidence 887777666532 234555553 4677777777766555554321 111 000 0000 0000
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCHHHHHHHHHHHhccCC------------------CCCcCCchHHHHHHH
Q 001144 433 TAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREE------------------NDSFADSSIELLHTQ 494 (1141)
Q Consensus 433 ~lK~s~l~si~~i~~al~~~~~~~~~f~f~~k~eLl~~l~~~i~~Ep------------------~~~L~s~~~~ll~~r 494 (1141)
+-.-.+-+.+-.|.++|++.-. +-.-+-|..-+..+.+++..-| +|. |+ .-
T Consensus 424 s~~~~L~~~~~~iVkai~~qlr---~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~Dk--Ss------ss 492 (1233)
T KOG1824|consen 424 SDLSMLSDQVPLIVKAIQKQLR---EKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDK--SS------SS 492 (1233)
T ss_pred cchHHHHhhhHHHHHHHHHHHh---hccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCc--cc------hH
Confidence 0011222222333333332110 0001111111111112221111 011 11 11
Q ss_pred HHHHHHhhhhc---ccCCCCChhHHHHHHHHhh--hccccCCCCCCchHHHHHHHHH---HHHHHHhhc---CCCCCCCH
Q 001144 495 ALALSACTTLV---TVEPKLTIETRNHVMKATL--GFFALPNDPIDVVNPLIDNLIT---LLCAILLTS---GEDGRSRA 563 (1141)
Q Consensus 495 ~~a~~ait~L~---~L~P~l~~e~~~~ll~~cl--sv~~lP~~~~~~~~~l~~~l~~---ll~~ll~~~---~~~~~~~~ 563 (1141)
+..|.++.-|. -..|+-..+-....|.... +|. ++-.+..++++.- +...|=-.. +.+ .++
T Consensus 493 ~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~------d~fyKisaEAL~v~~~lvkvirpl~~~~~~d--~~~ 564 (1233)
T KOG1824|consen 493 NLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVG------DPFYKISAEALLVCQQLVKVIRPLQPPSSFD--ASP 564 (1233)
T ss_pred HHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhc------CchHhhhHHHHHHHHHHHHHhcccCCCccCC--CCh
Confidence 22222222222 1222211111111111100 000 1111222333211 111110011 111 111
Q ss_pred HHHHHHHHhhhhh-hcCC-hhHHHhhHHHHHHHHHHHHHHhccccccccCCCCCcccccchhhccccCCCCCCCccCCCc
Q 001144 564 DQLLHILRQIDQY-VSSP-VEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPS 641 (1141)
Q Consensus 564 ~~Lq~il~~L~pW-l~S~-k~~EReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~f~~~p~~~~~p~ 641 (1141)
+ ...|+.-...- ..-+ .-..||||..++..++-.|.+. +.. + +|.
T Consensus 565 ~-v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~-------------------l~~-----e--------L~~ 611 (1233)
T KOG1824|consen 565 Y-VKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDF-------------------LGN-----E--------LPR 611 (1233)
T ss_pred h-HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhh-------------------hhh-----h--------hHH
Confidence 1 22222222222 2222 3346999999998888877654 111 0 111
Q ss_pred hhhhhhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCChhhhhhhhcchhHHHHHhhcCCCCCCh
Q 001144 642 REALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPS 721 (1141)
Q Consensus 642 ~~~~~lG~lvg~l~p~C~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~ 721 (1141)
++-.++-++ .++-+|-.|..|+..+.-=-+ ..... +...+.+..+.+...-..+...-.--
T Consensus 612 ----~L~il~eRl------~nEiTRl~AvkAlt~Ia~S~l------~i~l~---~~l~~il~~l~~flrK~~r~lr~~~l 672 (1233)
T KOG1824|consen 612 ----TLPILLERL------GNEITRLTAVKALTLIAMSPL------DIDLS---PVLTEILPELASFLRKNQRALRLATL 672 (1233)
T ss_pred ----HHHHHHHHH------hchhHHHHHHHHHHHHHhccc------eeehh---hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333 367899999999887751101 00000 11111111111111000000000001
Q ss_pred hHHHHHHHHHHhhCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhcC-cHH
Q 001144 722 EVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHIT-DKH 800 (1141)
Q Consensus 722 ~~~~~i~~~~~k~L~~~el~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i~-~~~ 800 (1141)
..+..+++..++.++.+.+...+-.+..=+.+...+.++-|-..|.+++...-.-+..- -.-|++.|...+.+=. +..
T Consensus 673 ~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~-~~~iL~~ii~ll~Spllqg~ 751 (1233)
T KOG1824|consen 673 TALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKI-SNPILDEIIRLLRSPLLQGG 751 (1233)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHH-hhhhHHHHHHHhhCccccch
Confidence 12256778889999999988888777777778888899999999999987765544222 3346777777776544 345
Q ss_pred HHHHHHHHHHHhhhcccchh-hHHHHhhhhcccccccccccccCCCCh------hh-HHHHhhc--------CcchHHHH
Q 001144 801 LRLETLGAISCLAENTNSKI-VFNEVLATAGKDIVTKDISRLRGGWPM------QD-AFHAFSQ--------HAVLSFLF 864 (1141)
Q Consensus 801 ~r~~~l~ai~lLa~~h~~~V-v~~~LL~~~~~~~~~~d~~~~~~plP~------d~-~W~aLa~--------~~~l~~~v 864 (1141)
+-..++.-...|..+-...+ .. .|++ .. ..|++= .+ .+.++|. -|.-+..+
T Consensus 752 al~~~l~~f~alV~t~~~~l~y~-~l~s-~l-----------t~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~ 818 (1233)
T KOG1824|consen 752 ALSALLLFFQALVITKEPDLDYI-SLLS-LL-----------TAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSL 818 (1233)
T ss_pred HHHHHHHHHHHHHhcCCCCccHH-HHHH-HH-----------cCCcccccccchhHHHHHHHHHHHHHHHHhccccchhH
Confidence 66677777777777766655 32 3331 11 223221 11 2222221 11112222
Q ss_pred HHHHHHHHccCCCccCCCCCCCCCCCCCCcccchhhHHHHHHHHHHHHhcCCc----chHHHHHHhhhHHHHHHHHHHhh
Q 001144 865 LEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGK----VGKKAVEKSYAPVLAALTLQLGS 940 (1141)
Q Consensus 865 L~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~plaAt~aL~Ell~~~~~----~~~~av~~~fp~Lf~aLL~ql~~ 940 (1141)
-.-|..-+++ | ..+ .-+-+-|+-.|+|+=+.-+. ++...+.+.|-.=+--+-.-.+|
T Consensus 819 a~kl~~~~~s-~-~s~-----------------~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ 879 (1233)
T KOG1824|consen 819 ATKLIQDLQS-P-KSS-----------------DSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASY 879 (1233)
T ss_pred HHHHHHHHhC-C-CCc-----------------hhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHH
Confidence 2222222221 0 000 00112233333332111100 22222222221111111111112
Q ss_pred hccCCCC-------------CCCChhH--HHHHHHHHHHHhhCChhHHHHHHhcCCCC----chhhhHhhHH-HHHHHHh
Q 001144 941 CHGLASS-------------GQHEPLR--AILTSFQAFCECVGDLEMRKILARDGEQN----DKEKWINLIG-DVAGCVS 1000 (1141)
Q Consensus 941 ~~~~~~~-------------~~~~P~~--~aleAlk~lL~~~g~~~~~~~le~~g~W~----~~~~~~~GV~-lLAram~ 1000 (1141)
.+|-... -...|-+ ..+-+||.++....-...-.+.+ .-|+ +-|.-.||.. .+|-|+-
T Consensus 880 ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~--~IW~lL~k~cE~~eegtR~vvAECLG 957 (1233)
T KOG1824|consen 880 ALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVE--KIWALLFKHCECAEEGTRNVVAECLG 957 (1233)
T ss_pred HhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHH--HHHHHHHHhcccchhhhHHHHHHHhh
Confidence 1111000 0223422 46778888877665542222222 2354 2233333332 2666655
Q ss_pred hcCChhHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccC-CccchHHHHHHHHhhhcCCCCchhhhhhccccCCccch
Q 001144 1001 IKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSG-GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI 1079 (1141)
Q Consensus 1001 ~~~~~~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~-~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~ 1079 (1141)
+-.+-.=-.++..|-..+.|+....|.+++..+-=.+.... .-.+++++-+.-...-++||+..||+.++..+.+.+.+
T Consensus 958 kL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahN 1037 (1233)
T KOG1824|consen 958 KLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHN 1037 (1233)
T ss_pred hHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHcc
Confidence 44444444566666777788888888887765544444422 34467777888888999999999999999999887776
Q ss_pred h---hhhhHHHHHHHHHh
Q 001144 1080 H---IHQYATQVLSVILA 1094 (1141)
Q Consensus 1080 k---v~~~~~~lL~all~ 1094 (1141)
| ++-..+.+|+.+++
T Consensus 1038 KpslIrDllpeLLp~Ly~ 1055 (1233)
T KOG1824|consen 1038 KPSLIRDLLPELLPLLYS 1055 (1233)
T ss_pred CHhHHHHHHHHHHHHHHH
Confidence 3 34444555554443
No 7
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=3.4 Score=51.62 Aligned_cols=541 Identities=14% Similarity=0.172 Sum_probs=289.0
Q ss_pred CCCHHHHHHHHHHHhccCCCCCcCCchHHHHHHHHHHHHHhhhhcc-cCCCCChhH-HHHHHHHhhhccccCCCCCCchH
Q 001144 461 LKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVT-VEPKLTIET-RNHVMKATLGFFALPNDPIDVVN 538 (1141)
Q Consensus 461 f~~k~eLl~~l~~~i~~Ep~~~L~s~~~~ll~~r~~a~~ait~L~~-L~P~l~~e~-~~~ll~~clsv~~lP~~~~~~~~ 538 (1141)
-++=++++..|..-+-+|++.. +|+-++.|+-+++. +.|. ..++ -++++-.... .+.+.+++. .
T Consensus 124 ~n~wp~li~~lv~nv~~~~~~~----------~k~~slealGyice~i~pe-vl~~~sN~iLtaIv~-gmrk~e~s~--~ 189 (859)
T KOG1241|consen 124 QNQWPELIVTLVSNVGEEQASM----------VKESSLEALGYICEDIDPE-VLEQQSNDILTAIVQ-GMRKEETSA--A 189 (859)
T ss_pred hhhCHHHHHHHHHhcccccchH----------HHHHHHHHHHHHHccCCHH-HHHHHHhHHHHHHHh-hccccCCch--h
Confidence 4456799999999888887543 67889999999986 7777 3333 3334333221 112222221 1
Q ss_pred HHHHHHHHHHHHHHhh--cCCCCCCCHHHHHHHHHhhhhhhcCChhHHHhhHHHHHHHHHHHHHHhccccccccCCCCCc
Q 001144 539 PLIDNLITLLCAILLT--SGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSC 616 (1141)
Q Consensus 539 ~l~~~l~~ll~~ll~~--~~~~~~~~~~~Lq~il~~L~pWl~S~k~~EReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~ 616 (1141)
.=+-+++.++.++-.+ +.+ .-.+-..|.+..--=.+|+...-|..|+++..+++.-|+++
T Consensus 190 vRLaa~~aL~nsLef~~~nF~----~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~-------------- 251 (859)
T KOG1241|consen 190 VRLAALNALYNSLEFTKANFN----NEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEF-------------- 251 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhhc----cHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 2244444444444322 222 12344445555555557888899999999999999988875
Q ss_pred ccccchhhccccCCCCCCCccCCCchhhhhhhh-HHHHhhcCccCCChhHHHHHHHHHHHH--------HHHHhhCCCCC
Q 001144 617 THIKQIDRAVLGNFSNLPSAYVLPSREALCLGN-RVIMYLPRCADTDSEVRKISAQILDQL--------FSISLSLPRPV 687 (1141)
Q Consensus 617 ~~~~~l~~~~~~~f~~~p~~~~~p~~~~~~lG~-lvg~l~p~C~D~~~~ir~~A~~~i~~L--------l~I~l~~~~~~ 687 (1141)
+.. .+|. +.++..=+...++.+|..+|+|==... +.++-...+
T Consensus 252 -----m~~---------------------yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~-- 303 (859)
T KOG1241|consen 252 -----MEP---------------------YMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQ-- 303 (859)
T ss_pred -----HHH---------------------HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Confidence 211 4555 555555556677777766666532212 111111111
Q ss_pred CCCCCCChhhhhhhhcchhH----HHHHh-h--cCCCCCC--hhHHHHHHHHHHhhCChHHHHHHHHHHHH-hccCCCch
Q 001144 688 GSSSGIDLELSYGALSSLED----VIAIL-R--SDASIDP--SEVFNRIVSSVCILLTKDELVATLHSCTT-AICDRTKQ 757 (1141)
Q Consensus 688 ~~~~~~~~~~~~~~l~~l~~----l~~~~-~--~~~~~~~--~~~~~~i~~~~~k~L~~~el~~li~tll~-~L~d~~~~ 757 (1141)
|..+ ...+=+...+.+ +++.+ + ++-..|+ +.+--..|=-+.-..-.+.++.-+|.-+| .+.+++-.
T Consensus 304 ~~~p----~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr 379 (859)
T KOG1241|consen 304 GLPP----SSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWR 379 (859)
T ss_pred CCCc----hhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchh
Confidence 1110 000001111112 11111 1 1111111 11111111111122223455556777777 88999888
Q ss_pred hHHHHHHHHHHHHHhhccc-cchhhHhHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhccc---------chhhHHHHhh
Q 001144 758 SAEGAIQAVVEFVTKRGNE-LSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTN---------SKIVFNEVLA 827 (1141)
Q Consensus 758 ~~~~A~~~L~~~l~~~g~~-l~e~dV~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~h~---------~~Vv~~~LL~ 827 (1141)
-..+|+..+-.++..+... +... |+.-+.+|...|. ...-.+|.++-..+.-++.+-+ +.++. .|+.
T Consensus 380 ~reaavmAFGSIl~gp~~~~Lt~i-V~qalp~ii~lm~-D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~-~l~~ 456 (859)
T KOG1241|consen 380 NREAAVMAFGSILEGPEPDKLTPI-VIQALPSIINLMS-DPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLS-ALLE 456 (859)
T ss_pred hhhHHHHHHHhhhcCCchhhhhHH-HhhhhHHHHHHhc-CchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHH-HHHH
Confidence 8899999999999876553 3234 8888888888888 6677888888888887776655 44443 4442
Q ss_pred hhcccccccccccccC--CCChhh----HHHHhhcC----c--chHHHHHHHHHHHHccCCCccCCCCCCCCCCCCCCcc
Q 001144 828 TAGKDIVTKDISRLRG--GWPMQD----AFHAFSQH----A--VLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTW 895 (1141)
Q Consensus 828 ~~~~~~~~~d~~~~~~--plP~d~----~W~aLa~~----~--~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~ 895 (1141)
. ..|.|+..- +|-+.. +|++.-++ + +....|++-|+..= +..| + +..+.
T Consensus 457 g------L~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~t-------dr~d-g----nqsNL- 517 (859)
T KOG1241|consen 457 G------LNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVT-------DRAD-G----NQSNL- 517 (859)
T ss_pred H------hhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhc-------cccc-c----chhhH-
Confidence 1 223332110 011100 34444333 1 12233333333311 1111 0 11222
Q ss_pred cchhhHHHHHHHHHHHHhcCCcchHHHHHHhhhHHHHHHHHHHhh-hccCCCCCCCCh-hHHHHHHHHHHHHhhCC--hh
Q 001144 896 IDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGS-CHGLASSGQHEP-LRAILTSFQAFCECVGD--LE 971 (1141)
Q Consensus 896 ~~~~~plaAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~-~~~~~~~~~~~P-~~~aleAlk~lL~~~g~--~~ 971 (1141)
-.||-.||.|+....-+.+-.+|+++++.++.-|=.-++. ..+.......+- .+..-..|+......+. .+
T Consensus 518 -----R~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~ 592 (859)
T KOG1241|consen 518 -----RSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIRE 592 (859)
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchh
Confidence 4679999999999887788888888888777644333330 111100000000 01111222222222222 11
Q ss_pred HHHH--------HHhcCCCC-chhhhHhhHHHHHHHHhhcCChhHHHHHHHHHhhhcCCcccchh-HHHHHHHHhhhccC
Q 001144 972 MRKI--------LARDGEQN-DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQRE-AAAAALSEFVRYSG 1041 (1141)
Q Consensus 972 ~~~~--------le~~g~W~-~~~~~~~GV~lLAram~~~~~~~~~~i~~~L~~~L~s~~~~qRi-~a~af~sELL~~~~ 1041 (1141)
+... ++. +.-. -.++-.-.|..||..+...=-.+++.+--||...|++..|.|-. +|+++...+-+.-.
T Consensus 593 ~~d~iM~lflri~~s-~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~ 671 (859)
T KOG1241|consen 593 VSDQIMGLFLRIFES-KRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALE 671 (859)
T ss_pred HHHHHHHHHHHHHcC-CccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 1111 111 1111 33455556666666665544456777777777777777776654 45577777776654
Q ss_pred -CccchHHHHHHHHhhhcCCCC--chhhhhhccccCCccch---hhhhhHHHHHHHHH
Q 001144 1042 -GFDSLLEQMVEALCRHVSDES--PTVRGLCLRGLVQIPSI---HIHQYATQVLSVIL 1093 (1141)
Q Consensus 1042 -~~~~l~~~~l~~L~~~l~D~~--~~VR~lslrGLgnl~~~---kv~~~~~~lL~all 1093 (1141)
+-.+.-+.+|..|.+.++.|+ -.|+-..|--.|.|+.. +...|...+++-+-
T Consensus 672 ~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq 729 (859)
T KOG1241|consen 672 DDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQ 729 (859)
T ss_pred hhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333445779999999999987 67887777788877664 66667666655443
No 8
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.35 E-value=2.2 Score=52.52 Aligned_cols=176 Identities=15% Similarity=0.188 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHhhCChhHHHHHHhcCCCC-chhhhHhhHHHHHHHHhhcCChhHHHHHHHHHhhhcCCcccchhHHHHH
Q 001144 954 RAILTSFQAFCECVGDLEMRKILARDGEQN-DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAA 1032 (1141)
Q Consensus 954 ~~aleAlk~lL~~~g~~~~~~~le~~g~W~-~~~~~~~GV~lLAram~~~~~~~~~~i~~~L~~~L~s~~~~qRi~a~af 1032 (1141)
+.+++.+..+....+...++..+...-... +++.-.+.|..++ .++...++.....+..+...++...+.-.--++..
T Consensus 322 ~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~-~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~ 400 (526)
T PF01602_consen 322 KKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIG-DLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINV 400 (526)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHH-HHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHH
T ss_pred HHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHH-HHHhccCchHHHHHHHHHHhhhhccccccchHHHH
Confidence 345666666665555555555555432111 2222333333333 34455566788888999999987766666666777
Q ss_pred HHHhhhccCCccchHHHHHHHHhhhcCC-CCchhhhhhccccCCccch--hhhhhHHHHHHHHHhhccCCChhHHHHHHH
Q 001144 1033 LSEFVRYSGGFDSLLEQMVEALCRHVSD-ESPTVRGLCLRGLVQIPSI--HIHQYATQVLSVILALLDDLDESVQLTAVS 1109 (1141)
Q Consensus 1033 ~sELL~~~~~~~~l~~~~l~~L~~~l~D-~~~~VR~lslrGLgnl~~~--kv~~~~~~lL~all~~l~d~~~~vvleam~ 1109 (1141)
+..++..... ..+.++..|.+.+.+ +++.++..++-=+|.-... ... ..+.++.-+...+-+.++.+-...+.
T Consensus 401 i~~ll~~~~~---~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~~l~~~~~~~~~~vk~~ilt 476 (526)
T PF01602_consen 401 IRDLLSNNPE---LREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTE-SAPDILRSLIENFIEESPEVKLQILT 476 (526)
T ss_dssp HHHHHHHSTT---THHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHhhcChh---hhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccc-cHHHHHHHHHHhhccccHHHHHHHHH
Confidence 7777776441 234466677776666 4477777776666654433 112 56777888888887767789999999
Q ss_pred HHHHHhccCCCCCccchHHHHHHHh
Q 001144 1110 CLLTILKSSSKDAVEPILLNLSVRL 1134 (1141)
Q Consensus 1110 ~L~~lL~~l~~~~~~~~l~~ia~rl 1134 (1141)
.+.++...-+.....+-+++...+.
T Consensus 477 ~~~Kl~~~~~~~~~~~~i~~~~~~~ 501 (526)
T PF01602_consen 477 ALAKLFKRNPENEVQNEILQFLLSL 501 (526)
T ss_dssp HHHHHHHHSCSTTHHHHHHHHHHCH
T ss_pred HHHHHHhhCCchhhHHHHHHHHHHH
Confidence 9999999887766655555444443
No 9
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.57 E-value=0.023 Score=60.00 Aligned_cols=108 Identities=26% Similarity=0.280 Sum_probs=88.2
Q ss_pred hhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccchhhhhhHHHHHHHHHhhccCCChhHHH
Q 001144 1026 REAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQL 1105 (1141)
Q Consensus 1026 Ri~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~kv~~~~~~lL~all~~l~d~~~~vvl 1105 (1141)
|..++..+..|..... .++++.+..+.++++|++|.||+-++..|.++...+.-+..++++..++..+.|.|++|..
T Consensus 5 R~n~i~~l~DL~~r~~---~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~ 81 (178)
T PF12717_consen 5 RNNAIIALGDLCIRYP---NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRS 81 (178)
T ss_pred HHHHHHHHHHHHHhCc---HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHH
Confidence 4556666776665543 3678888899999999999999999999999987755556677778888888999999999
Q ss_pred HHHHHHHHHhccCCCCCccchHHHHHHHhcc
Q 001144 1106 TAVSCLLTILKSSSKDAVEPILLNLSVRLRN 1136 (1141)
Q Consensus 1106 eam~~L~~lL~~l~~~~~~~~l~~ia~rlR~ 1136 (1141)
-|-..+..+....++..+...+..+-.++-.
T Consensus 82 ~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 82 LARSFFSELLKKRNPNIIYNNFPELISSLNN 112 (178)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 9999999999998888888888887776544
No 10
>PTZ00429 beta-adaptin; Provisional
Probab=95.15 E-value=15 Score=47.45 Aligned_cols=400 Identities=13% Similarity=0.102 Sum_probs=209.9
Q ss_pred HHHHHHHHHhhhhhhcCChhHHHhhHHHHHHHHHHHHHHhccccccccCCCCCcccccchhhccccCCCCCCCccCCCch
Q 001144 563 ADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSR 642 (1141)
Q Consensus 563 ~~~Lq~il~~L~pWl~S~k~~EReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~f~~~p~~~~~p~~ 642 (1141)
++..-..+..+..=+.+++..-|--|+.+... +...
T Consensus 100 pelalLaINtl~KDl~d~Np~IRaLALRtLs~---------------------------Ir~~----------------- 135 (746)
T PTZ00429 100 PEKALLAVNTFLQDTTNSSPVVRALAVRTMMC---------------------------IRVS----------------- 135 (746)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHc---------------------------CCcH-----------------
Confidence 44444456777788888888888777765321 1111
Q ss_pred hhhhhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCChhhhhhhhcchhHHHHHhhcCCCCCChh
Q 001144 643 EALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSE 722 (1141)
Q Consensus 643 ~~~~lG~lvg~l~p~C~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~ 722 (1141)
..+..++.-+--.+.|+++-||+.|+-|+..++.+.- ....+ ..+.+ .+.++ +...++.
T Consensus 136 --~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p------elv~~---~~~~~------~L~~L----L~D~dp~ 194 (746)
T PTZ00429 136 --SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM------QLFYQ---QDFKK------DLVEL----LNDNNPV 194 (746)
T ss_pred --HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc------ccccc---cchHH------HHHHH----hcCCCcc
Confidence 1556666666667789999999999999999984311 11000 11111 12221 2223444
Q ss_pred HHHHHHHHH---HhhCCh--HHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhcC
Q 001144 723 VFNRIVSSV---CILLTK--DELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHIT 797 (1141)
Q Consensus 723 ~~~~i~~~~---~k~L~~--~el~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i~ 797 (1141)
+....+..+ .+.-+. .-....+..+++.|.+. +-.+-..+|+.+.+.. +.= +.+.-+|++.+..+|.+.
T Consensus 195 Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~---~EW~Qi~IL~lL~~y~-P~~-~~e~~~il~~l~~~Lq~~- 268 (746)
T PTZ00429 195 VASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPEC---NEWGQLYILELLAAQR-PSD-KESAETLLTRVLPRMSHQ- 268 (746)
T ss_pred HHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcC---ChHHHHHHHHHHHhcC-CCC-cHHHHHHHHHHHHHhcCC-
Confidence 443333322 221110 01123333444555433 2355566777776533 222 233667888888888775
Q ss_pred cHHHHHHHHHHHHHhhhcccchhhHHHHhhhhcccccccccccccCCCChhhHHHHhhcCcchHHHHHHHHHHHHccCCC
Q 001144 798 DKHLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPF 877 (1141)
Q Consensus 798 ~~~~r~~~l~ai~lLa~~h~~~Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~aLa~~~~l~~~vL~~LL~~L~~~p~ 877 (1141)
++.+--++.+++..++.....+.+. ..+ + ++-.-|+. |.++++
T Consensus 269 N~AVVl~Aik~il~l~~~~~~~~~~-~~~-------------------------~----------rl~~pLv~-L~ss~~ 311 (746)
T PTZ00429 269 NPAVVMGAIKVVANLASRCSQELIE-RCT-------------------------V----------RVNTALLT-LSRRDA 311 (746)
T ss_pred CHHHHHHHHHHHHHhcCcCCHHHHH-HHH-------------------------H----------HHHHHHHH-hhCCCc
Confidence 4667777777776666543223332 222 0 01011111 111110
Q ss_pred ccCCCCCCCCCCCCCCcccchhhHHHHHHHHHHHHhcCCcchHHHHHHhhhHHHHHHHHHHhhhccCCCCCCCChhHHHH
Q 001144 878 VKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAIL 957 (1141)
Q Consensus 878 ~~e~~~~~~~~~~~~~~~~~~~~plaAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~~al 957 (1141)
. +-..|.+.|..++.. +|++|..-+-.+ |+. ..+|.....
T Consensus 312 -----------------e----iqyvaLr~I~~i~~~------------~P~lf~~~~~~F-f~~------~~Dp~yIK~ 351 (746)
T PTZ00429 312 -----------------E----TQYIVCKNIHALLVI------------FPNLLRTNLDSF-YVR------YSDPPFVKL 351 (746)
T ss_pred -----------------c----HHHHHHHHHHHHHHH------------CHHHHHHHHHhh-hcc------cCCcHHHHH
Confidence 0 124455566544433 466665532222 111 235656677
Q ss_pred HHHHHHHHhhCChhHHHHHHhcCCCC---chhhhHhhHHHHHHHHhhcCChhHHHHHHHHHhhhcCCcccchhHHHHHHH
Q 001144 958 TSFQAFCECVGDLEMRKILARDGEQN---DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALS 1034 (1141)
Q Consensus 958 eAlk~lL~~~g~~~~~~~le~~g~W~---~~~~~~~GV~lLAram~~~~~~~~~~i~~~L~~~L~s~~~~qRi~a~af~s 1034 (1141)
.+|..++.-+....+...+++-..+- +.+.-.+.|.-++++- .+.+.....++..|..+++...+. -.-++.++-
T Consensus 352 ~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA-~k~~~~a~~cV~~Ll~ll~~~~~~-v~e~i~vik 429 (746)
T PTZ00429 352 EKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLA-IKVDSVAPDCANLLLQIVDRRPEL-LPQVVTAAK 429 (746)
T ss_pred HHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH-HhChHHHHHHHHHHHHHhcCCchh-HHHHHHHHH
Confidence 77777766666655555554433332 4555556666555543 344556778888888888664442 223456666
Q ss_pred HhhhccCCccchHHHHHHHHhhhc--CC-CCchhhhhhccccCCccchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHH
Q 001144 1035 EFVRYSGGFDSLLEQMVEALCRHV--SD-ESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCL 1111 (1141)
Q Consensus 1035 ELL~~~~~~~~l~~~~l~~L~~~l--~D-~~~~VR~lslrGLgnl~~~kv~~~~~~lL~all~~l~d~~~~vvleam~~L 1111 (1141)
.+++..... . ++..|.+.+ .+ .++..|...+=-+|.... .+. ..+.+|..+++.+.+.+..|.+..+...
T Consensus 430 ~IlrkyP~~-~----il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~-~I~-~a~~~L~~~i~~f~~E~~~VqlqlLta~ 502 (746)
T PTZ00429 430 DIVRKYPEL-L----MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCD-FIE-NGKDIIQRFIDTIMEHEQRVQLAILSAA 502 (746)
T ss_pred HHHHHCccH-H----HHHHHHHhhcccccccHHHHHHHHHHHHhhHh-hHh-hHHHHHHHHHhhhccCCHHHHHHHHHHH
Confidence 776664422 1 333444322 11 234555444434444322 222 3567787778887776778888888888
Q ss_pred HHHhccCC
Q 001144 1112 LTILKSSS 1119 (1141)
Q Consensus 1112 ~~lL~~l~ 1119 (1141)
.|++-.-.
T Consensus 503 vKlfl~~p 510 (746)
T PTZ00429 503 VKMFLRDP 510 (746)
T ss_pred HHHHhcCc
Confidence 88877654
No 11
>PTZ00429 beta-adaptin; Provisional
Probab=94.81 E-value=10 Score=48.90 Aligned_cols=304 Identities=11% Similarity=0.100 Sum_probs=162.4
Q ss_pred HHHHHhhCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhcCcHHHHHHHHH
Q 001144 728 VSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLG 807 (1141)
Q Consensus 728 ~~~~~k~L~~~el~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i~~~~~r~~~l~ 807 (1141)
.+.++..-.++-+..++..+..++.|++...-..|+..+-.+++.....+ + ..++++.+.. |-..+++.+...++.
T Consensus 126 LRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv-~--~~~~~~~L~~-LL~D~dp~Vv~nAl~ 201 (746)
T PTZ00429 126 VRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLF-Y--QQDFKKDLVE-LLNDNNPVVASNAAA 201 (746)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccc-c--ccchHHHHHH-HhcCCCccHHHHHHH
Confidence 44555555555555566778889999988888888877777776443222 1 1234444444 334678888888888
Q ss_pred HHHHhhhcccchhhHHHHhhhhcccccccccccccCCCChhhHHHHhhcCcchHHHHHHHHHHHHccCCCccCCCCCCCC
Q 001144 808 AISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDY 887 (1141)
Q Consensus 808 ai~lLa~~h~~~Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~aLa~~~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~ 887 (1141)
++.-+..+.++. +. +. ...+..|+..|.+-. +
T Consensus 202 aL~eI~~~~~~~-l~--l~-----------------------------------~~~~~~Ll~~L~e~~---E------- 233 (746)
T PTZ00429 202 IVCEVNDYGSEK-IE--SS-----------------------------------NEWVNRLVYHLPECN---E------- 233 (746)
T ss_pred HHHHHHHhCchh-hH--HH-----------------------------------HHHHHHHHHHhhcCC---h-------
Confidence 888877654421 10 00 111112222211000 0
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHhcCCcchHHHHHHhhhHHHHHHHHHHhhhccCCCCCCCChhHHHHHHHHHHHHhh
Q 001144 888 SSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECV 967 (1141)
Q Consensus 888 ~~~~~~~~~~~~~plaAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~lL~~~ 967 (1141)
+ ..+..+..|.. +.| ....... .++-.++-++.+ .|| ...++|.|.++.-+
T Consensus 234 ------W-----~Qi~IL~lL~~--y~P--~~~~e~~----~il~~l~~~Lq~---------~N~-AVVl~Aik~il~l~ 284 (746)
T PTZ00429 234 ------W-----GQLYILELLAA--QRP--SDKESAE----TLLTRVLPRMSH---------QNP-AVVMGAIKVVANLA 284 (746)
T ss_pred ------H-----HHHHHHHHHHh--cCC--CCcHHHH----HHHHHHHHHhcC---------CCH-HHHHHHHHHHHHhc
Confidence 0 01111111111 111 0001111 122222222211 233 56777777766554
Q ss_pred CC--hhHH-HHHHhcCC-----CC-chhhhHhhHHHHHHHHhhcCChhHHHHHHHHHhhhcCCcccchhHHHHHHHHhhh
Q 001144 968 GD--LEMR-KILARDGE-----QN-DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVR 1038 (1141)
Q Consensus 968 g~--~~~~-~~le~~g~-----W~-~~~~~~~GV~lLAram~~~~~~~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~ 1038 (1141)
.+ .+.. ..+.+-+. -. +++.=+-++..+ +.+++.++..+..-+..+....+.+..- |....-+++.+.+
T Consensus 285 ~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I-~~i~~~~P~lf~~~~~~Ff~~~~Dp~yI-K~~KLeIL~~Lan 362 (746)
T PTZ00429 285 SRCSQELIERCTVRVNTALLTLSRRDAETQYIVCKNI-HALLVIFPNLLRTNLDSFYVRYSDPPFV-KLEKLRLLLKLVT 362 (746)
T ss_pred CcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHH-HHHHHHCHHHHHHHHHhhhcccCCcHHH-HHHHHHHHHHHcC
Confidence 33 1111 11111000 00 233333333333 4555566555555444444444444433 5555666666654
Q ss_pred ccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccC
Q 001144 1039 YSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSS 1118 (1141)
Q Consensus 1039 ~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~l 1118 (1141)
... .+.++.-|.+...|.+..+|.-++|.+|+++. +.......+++.+++.+.+.. +++.|++..+..|++.-
T Consensus 363 e~N-----v~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~-k~~~~a~~cV~~Ll~ll~~~~-~~v~e~i~vik~Ilrky 435 (746)
T PTZ00429 363 PSV-----APEILKELAEYASGVDMVFVVEVVRAIASLAI-KVDSVAPDCANLLLQIVDRRP-ELLPQVVTAAKDIVRKY 435 (746)
T ss_pred ccc-----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHC
Confidence 432 35577888888899999999999999999985 344456777888888887644 46679999999999876
Q ss_pred CCC
Q 001144 1119 SKD 1121 (1141)
Q Consensus 1119 ~~~ 1121 (1141)
.+.
T Consensus 436 P~~ 438 (746)
T PTZ00429 436 PEL 438 (746)
T ss_pred ccH
Confidence 654
No 12
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.52 E-value=0.042 Score=46.07 Aligned_cols=52 Identities=27% Similarity=0.393 Sum_probs=45.9
Q ss_pred chhhhhhccccCCccch---hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHH
Q 001144 1063 PTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTI 1114 (1141)
Q Consensus 1063 ~~VR~lslrGLgnl~~~---kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~l 1114 (1141)
|.||.-+..+||+++.+ .++.+.+.+++.+...+.|.++.|...|..+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 57999999999998754 67889999999999999998889999999998865
No 13
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=94.50 E-value=2.7 Score=51.51 Aligned_cols=311 Identities=12% Similarity=0.056 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhcccchhhHHHHhhhhccccccccc
Q 001144 759 AEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDI 838 (1141)
Q Consensus 759 ~~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~h~~~Vv~~~LL~~~~~~~~~~d~ 838 (1141)
..-+..++...+..++..-... +-.++..++.++.--+ +.+++.+...+.-+.-.--..... ..+.-+.|
T Consensus 72 ~~~~~~v~~~~~a~~~~~~d~~-~~~~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~~~-~~l~~l~~------- 141 (569)
T KOG1242|consen 72 LRNNVVVLEGTLAFHLQIVDPR-PISIIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLSGE-YVLELLLE------- 141 (569)
T ss_pred HhhhhHHHHHHHHHhccccCcc-hhHHHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccCHH-HHHHHHHH-------
Confidence 3667778899999999888545 8889999998886655 567776666655443322222111 11100001
Q ss_pred ccccCCCChhh--------HHHHhhcCc---chHHHHHHHHHHHHccCCCccCCCCCCCCCCCCCCcccchhhHHHHHHH
Q 001144 839 SRLRGGWPMQD--------AFHAFSQHA---VLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILA 907 (1141)
Q Consensus 839 ~~~~~plP~d~--------~W~aLa~~~---~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~plaAt~a 907 (1141)
....+--. .|.-+.... ---..++..|-..++.+..+ .+.+.+ +-|..+
T Consensus 142 ---ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~-------------~~re~~----~~a~~~ 201 (569)
T KOG1242|consen 142 ---LLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSA-------------LNREAA----LLAFEA 201 (569)
T ss_pred ---HhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchh-------------hcHHHH----HHHHHH
Confidence 11111111 232222211 11123333333333322111 111112 223333
Q ss_pred HHHHHhcCCcchHHHHHHhhhHHHHHHHHHHhhhccCCCCCCCChhHHHHHHHHHHHHhhCChhHHHHHHh------cCC
Q 001144 908 LTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILAR------DGE 981 (1141)
Q Consensus 908 L~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~lL~~~g~~~~~~~le~------~g~ 981 (1141)
.+..|- + ....-+..+||.+|..+ +--.+ .+ -..+.+|.|+++.+.-...+-..+-- ..-
T Consensus 202 ~~~~Lg-~--~~EPyiv~~lp~il~~~----~d~~~-----~V--r~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~k 267 (569)
T KOG1242|consen 202 AQGNLG-P--PFEPYIVPILPSILTNF----GDKIN-----KV--REAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAK 267 (569)
T ss_pred HHHhcC-C--CCCchHHhhHHHHHHHh----hccch-----hh--hHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHh
Confidence 333332 3 56667778888888754 11111 11 23678888888888766655433221 125
Q ss_pred CCchhhhHhhHHHHHHHHhhcCChhHHHHHHHHHhhhcC-Ccccc---hhHHH---HHHHHhhhccCCccchHHHHHHHH
Q 001144 982 QNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINR-QQRFQ---REAAA---AALSEFVRYSGGFDSLLEQMVEAL 1054 (1141)
Q Consensus 982 W~~~~~~~~GV~lLAram~~~~~~~~~~i~~~L~~~L~s-~~~~q---Ri~a~---af~sELL~~~~~~~~l~~~~l~~L 1054 (1141)
|.+. .++-.+.++|+.+.+.++-.-+..++|-+.. --+++ |-++. -=|.+++..+ .++.++..|
T Consensus 268 WrtK----~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~-----dI~~~ip~L 338 (569)
T KOG1242|consen 268 WRTK----MASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNP-----DIQKIIPTL 338 (569)
T ss_pred hhhH----HHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccH-----HHHHHHHHH
Confidence 7632 3444555688888888877777777777633 22333 33333 3333444333 256788889
Q ss_pred hhhcCCCCchhh---------------------------------------hhhccccCCccch-----hhhhhHHHHHH
Q 001144 1055 CRHVSDESPTVR---------------------------------------GLCLRGLVQIPSI-----HIHQYATQVLS 1090 (1141)
Q Consensus 1055 ~~~l~D~~~~VR---------------------------------------~lslrGLgnl~~~-----kv~~~~~~lL~ 1090 (1141)
.+.+.||+..+. +....-.+||... .+..|.+.+++
T Consensus 339 ld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp 418 (569)
T KOG1242|consen 339 LDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLP 418 (569)
T ss_pred HHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhh
Confidence 999999985444 1111222244332 46788899999
Q ss_pred HHHhhccCCChhHHHHHHHHHHHHhccCCCCC
Q 001144 1091 VILALLDDLDESVQLTAVSCLLTILKSSSKDA 1122 (1141)
Q Consensus 1091 all~~l~d~~~~vvleam~~L~~lL~~l~~~~ 1122 (1141)
.+-..++|.+.++.-.|-+.|..+++.++.+.
T Consensus 419 ~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~ 450 (569)
T KOG1242|consen 419 GLKENLDDAVPEVRAVAARALGALLERLGEVS 450 (569)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHHHhhc
Confidence 99999999988999999999999999888765
No 14
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.48 E-value=16 Score=44.59 Aligned_cols=257 Identities=14% Similarity=0.113 Sum_probs=156.2
Q ss_pred chhHHHHHHHHHHHHHh----hccccchhhHhHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhcccchhhHHHHhhhhcc
Q 001144 756 KQSAEGAIQAVVEFVTK----RGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVLATAGK 831 (1141)
Q Consensus 756 ~~~~~~A~~~L~~~l~~----~g~~l~e~dV~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~h~~~Vv~~~LL~~~~~ 831 (1141)
.+.++++++++.-++|. +.+.+ ++++++.-+-.++..+ .+.+|+.++.=++.|-....-+.+. .+=
T Consensus 138 d~~V~~~aeLLdRLikdIVte~~~tF---sL~~~ipLL~eriy~~-n~~tR~flv~Wl~~Lds~P~~~m~~-yl~----- 207 (675)
T KOG0212|consen 138 DQNVRGGAELLDRLIKDIVTESASTF---SLPEFIPLLRERIYVI-NPMTRQFLVSWLYVLDSVPDLEMIS-YLP----- 207 (675)
T ss_pred ccccccHHHHHHHHHHHhcccccccc---CHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhcCCcHHHHh-cch-----
Confidence 44667888888777765 33344 2899999999999888 7899999999999999888777763 322
Q ss_pred cccccccccccCCCChhhHHHHhhcCcchH----HHHHHHHHHHHccCCCccCCCCCCCCCCCCCCcccchhhHHHHHHH
Q 001144 832 DIVTKDISRLRGGWPMQDAFHAFSQHAVLS----FLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILA 907 (1141)
Q Consensus 832 ~~~~~d~~~~~~plP~d~~W~aLa~~~~l~----~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~plaAt~a 907 (1141)
-=+|-++..|+....-. ..+|..+|.-+++.|..-+-++..+- -.++.++-.|....-|
T Consensus 208 -------------~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~v----lv~~l~ss~~~iq~~a 270 (675)
T KOG0212|consen 208 -------------SLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINV----LVPHLQSSEPEIQLKA 270 (675)
T ss_pred -------------HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhh----ccccccCCcHHHHHHH
Confidence 11244788887775544 45566677778877765332222221 1112222234444444
Q ss_pred HH---HHHhcCCcchHHHHHHhhhHHHHHHHHHHhhhccCCCCCCCChhHHHHHHHHHHHHhhCChhHHHHHHhcCCCCc
Q 001144 908 LT---AFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILARDGEQND 984 (1141)
Q Consensus 908 L~---Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~lL~~~g~~~~~~~le~~g~W~~ 984 (1141)
|+ |+.+.+ ...+.-++|.+|.++|--+++.-+. + ...+-.-.. ..+.+.+....+ .
T Consensus 271 l~Wi~efV~i~----g~~~l~~~s~il~~iLpc~s~~e~~------~-i~~~a~~~n--------~~l~~l~s~~~~--~ 329 (675)
T KOG0212|consen 271 LTWIQEFVKIP----GRDLLLYLSGILTAILPCLSDTEEM------S-IKEYAQMVN--------GLLLKLVSSERL--K 329 (675)
T ss_pred HHHHHHHhcCC----CcchhhhhhhhhhhcccCCCCCccc------c-HHHHHHHHH--------HHHHHHHhhhhh--c
Confidence 44 444443 3455556666666554322221110 0 000000000 000110110000 0
Q ss_pred hhhhHhhHHHHHHHHhhcCChhHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchH--HHHHHHHhhhcCCCC
Q 001144 985 KEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLL--EQMVEALCRHVSDES 1062 (1141)
Q Consensus 985 ~~~~~~GV~lLAram~~~~~~~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~--~~~l~~L~~~l~D~~ 1062 (1141)
..-...+|++-+.+++.+..+.-|+++.-.+.-+.+... .+.+. +++..+|.+.++|++
T Consensus 330 ------------------~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p-~ql~~h~~~if~tLL~tLsd~s 390 (675)
T KOG0212|consen 330 ------------------EEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAP-GQLLVHNDSIFLTLLKTLSDRS 390 (675)
T ss_pred ------------------cccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCc-chhhhhccHHHHHHHHhhcCch
Confidence 002467899999999999999999999998888877765 33333 558899999999999
Q ss_pred chhhhhhccccCCccch
Q 001144 1063 PTVRGLCLRGLVQIPSI 1079 (1141)
Q Consensus 1063 ~~VR~lslrGLgnl~~~ 1079 (1141)
..|=..++--+++++..
T Consensus 391 d~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 391 DEVVLLALSLLASICSS 407 (675)
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 88888888777777554
No 15
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=94.30 E-value=2.2 Score=54.02 Aligned_cols=285 Identities=15% Similarity=0.203 Sum_probs=161.1
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCHHHHHHHHHHHhccCCCCCcCCchHHHHHHHHHHHHHhhhhcccCC
Q 001144 430 RHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEP 509 (1141)
Q Consensus 430 kd~~lK~s~l~si~~i~~al~~~~~~~~~f~f~~k~eLl~~l~~~i~~Ep~~~L~s~~~~ll~~r~~a~~ait~L~~L~P 509 (1141)
+-+.+|.+-+++.+-.|+. +-- -+--+.+++.++.+--+.. -+ +-...|.|++..++++|
T Consensus 503 ~~~~~ki~a~~~~~~~~~~-----~vl----~~~~p~ild~L~qlas~~s--------~e---vl~llmE~Ls~vv~~dp 562 (1005)
T KOG2274|consen 503 VPPPVKISAVRAFCGYCKV-----KVL----LSLQPMILDGLLQLASKSS--------DE---VLVLLMEALSSVVKLDP 562 (1005)
T ss_pred CCCchhHHHHHHHHhccCc-----eec----cccchHHHHHHHHHccccc--------HH---HHHHHHHHHHHHhccCh
Confidence 4556788887777776621 111 1123456666555443222 12 44779999999999999
Q ss_pred CCChhHHHHHHHHhhhccccCCCCCCchHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHhhhhhhcCChhHHHhhHH
Q 001144 510 KLTIETRNHVMKATLGFFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSC 589 (1141)
Q Consensus 510 ~l~~e~~~~ll~~clsv~~lP~~~~~~~~~l~~~l~~ll~~ll~~~~~~~~~~~~~Lq~il~~L~pWl~S~k~~EReRA~ 589 (1141)
.......+.+.-..+.+|.--+++ +.+ .....+.+..+++.....+++-...+-.+++.|.- .-+|.| .--+
T Consensus 563 ef~as~~skI~P~~i~lF~k~s~D-P~V---~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~--~~~~~~--~~l~ 634 (1005)
T KOG2274|consen 563 EFAASMESKICPLTINLFLKYSED-PQV---ASLAQDLFEELLQIAANYGPMQERLIPSLISVLQL--NADKAP--AGLC 634 (1005)
T ss_pred hhhhhhhcchhHHHHHHHHHhcCC-chH---HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcC--cccccC--chhh
Confidence 999888888765545444422221 111 22233344444443222122111222222222210 012233 2233
Q ss_pred HHHHHHHHHHHHhccccccccCCCCCcccccchhhccccCCCCCCCccCCCchhhhhhhh---HHHHhhcCccCCChhHH
Q 001144 590 LAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGN---RVIMYLPRCADTDSEVR 666 (1141)
Q Consensus 590 ~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~f~~~p~~~~~p~~~~~~lG~---lvg~l~p~C~D~~~~ir 666 (1141)
.+...+|..++++ .|+. +|. . ..|. -|+...++-. |.++-
T Consensus 635 ~~aidvLttvvr~------------------------------tp~p--L~~-~--l~~~~FpaVak~tlHsd--D~~tl 677 (1005)
T KOG2274|consen 635 AIAIDVLTTVLRN------------------------------TPSP--LPN-L--LICYAFPAVAKITLHSD--DHETL 677 (1005)
T ss_pred HHHHHHHHHHHhc------------------------------CCCC--ccH-H--HHHHHhHHhHhheeecC--ChHHH
Confidence 4444555544433 1111 110 0 1111 2344444433 34788
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCCCCCChhhhhhhhcchhHHHHHhhcCCCCCChhHHHHHHHHHHhhCChHHHHHHHHH
Q 001144 667 KISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFNRIVSSVCILLTKDELVATLHS 746 (1141)
Q Consensus 667 ~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~k~L~~~el~~li~t 746 (1141)
|.|-||+.++..-.. + .+.. +.. ++...+..+.+++.+.|+|+-
T Consensus 678 Q~~~EcLra~Is~~~--------------e----------q~~t---~~~--e~g~~~~yImqV~sqLLdp~~------- 721 (1005)
T KOG2274|consen 678 QNATECLRALISVTL--------------E----------QLLT---WHD--EPGHNLWYIMQVLSQLLDPET------- 721 (1005)
T ss_pred HhHHHHHHHHHhcCH--------------H----------HHHh---hcc--CCCccHHHHHHHHHHHcCCcc-------
Confidence 899999988863211 0 0000 000 111114567777777666542
Q ss_pred HHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhcccchhhHHHHh
Q 001144 747 CTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVL 826 (1141)
Q Consensus 747 ll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~h~~~Vv~~~LL 826 (1141)
+...+--.+.++.+++...|.++.+. +..|++++..+|......++.+.++-+..-|....++.++ .+|
T Consensus 722 --------sds~a~~VG~lV~tLit~a~~el~~n-~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t~~~~~l--~FL 790 (1005)
T KOG2274|consen 722 --------SDSAAAFVGPLVLTLITHASSELGPN-LDQILRAVISRLQQAETLSVIQSLIMVFAHLVHTDLDQLL--NFL 790 (1005)
T ss_pred --------chhHHHHHhHHHHHHHHHHHHHhchh-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCCHHHHH--HHH
Confidence 12233456778999999999999666 9999999999999999999999999999999999999999 577
No 16
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.46 E-value=0.16 Score=48.23 Aligned_cols=86 Identities=21% Similarity=0.301 Sum_probs=66.3
Q ss_pred hHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccch---hhhhhHHHHHHHHHhhccCCChhH
Q 001144 1027 EAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESV 1103 (1141)
Q Consensus 1027 i~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~---kv~~~~~~lL~all~~l~d~~~~v 1103 (1141)
+.+.+.++.-+... .....+.++.-+.+.+.|+++.||..+...|.|++.. .+-.|...+++++.....|.|++|
T Consensus 7 li~Laa~ai~l~~~--~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~V 84 (97)
T PF12755_consen 7 LIGLAAVAIALGKD--ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENV 84 (97)
T ss_pred HHHHHHHHHHchHh--HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhH
Confidence 34555555555544 2235577999999999999999999999999999765 555578999999999999999998
Q ss_pred HHHHHHHHHHHh
Q 001144 1104 QLTAVSCLLTIL 1115 (1141)
Q Consensus 1104 vleam~~L~~lL 1115 (1141)
...| ..|-++|
T Consensus 85 r~~a-~~Ld~ll 95 (97)
T PF12755_consen 85 RSAA-ELLDRLL 95 (97)
T ss_pred HHHH-HHHHHHh
Confidence 7665 5555554
No 17
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.37 E-value=37 Score=44.97 Aligned_cols=209 Identities=15% Similarity=0.140 Sum_probs=144.5
Q ss_pred HHHHHHHHhhhhhhcCChhHHHhhHHHHHHHHHHHHHHhccccccccCCCCCcccccchhhccccCCCCCCCccCCCchh
Q 001144 564 DQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSRE 643 (1141)
Q Consensus 564 ~~Lq~il~~L~pWl~S~k~~EReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~f~~~p~~~~~p~~~ 643 (1141)
+.+..|.+.|.+=++|-...-|.-++.+..++++..-. ..
T Consensus 693 q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~----------------------------------------e~ 732 (1176)
T KOG1248|consen 693 QRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSA----------------------------------------EH 732 (1176)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccH----------------------------------------HH
Confidence 34445556666666677777777778887777771110 01
Q ss_pred hhhhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCChhhhhhhhcchhHHHHHhhcCCCCCChhH
Q 001144 644 ALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEV 723 (1141)
Q Consensus 644 ~~~lG~lvg~l~p~C~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~ 723 (1141)
+..+=+++....+.--|-|..-|+.|.+||+.+..|+..+. .|. + + +-..+++++.++..++.++...+
T Consensus 733 ~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d--~g~----e-~----~~~~lnefl~~Isagl~gd~~~~ 801 (1176)
T KOG1248|consen 733 CDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLD--DGN----E-P----ASAILNEFLSIISAGLVGDSTRV 801 (1176)
T ss_pred HHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhc--ccc----c-c----hHHHHHHHHHHHHhhhcccHHHH
Confidence 22566777777777799999999999999999998877542 121 1 1 12346677777777766664322
Q ss_pred H-------HHHHHHHHhhCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhh-ccccchhhHhHHHHHHHHHhhh
Q 001144 724 F-------NRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKR-GNELSETDVSRTTQSLLSAAVH 795 (1141)
Q Consensus 724 ~-------~~i~~~~~k~L~~~el~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~-g~~l~e~dV~eIv~~i~~~L~~ 795 (1141)
. +++.+.+.+.++.+=+.+++-+.---|....++-+.+|...++.++..- ..-+..- +++|+..++. +.+
T Consensus 802 ~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~-~~~LL~sll~-ls~ 879 (1176)
T KOG1248|consen 802 VASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPH-LEELLPSLLA-LSH 879 (1176)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhh-HHHHHHHHHH-HHH
Confidence 2 4667778899998888888888888888888899999999998888653 2233222 7778877777 555
Q ss_pred cCcHHHHHHHHHHHHHhhhcccchhhHHHHh
Q 001144 796 ITDKHLRLETLGAISCLAENTNSKIVFNEVL 826 (1141)
Q Consensus 796 i~~~~~r~~~l~ai~lLa~~h~~~Vv~~~LL 826 (1141)
-+...+|..+..-+--|.+.+--+.+. .++
T Consensus 880 d~k~~~r~Kvr~LlekLirkfg~~eLe-~~~ 909 (1176)
T KOG1248|consen 880 DHKIKVRKKVRLLLEKLIRKFGAEELE-SFL 909 (1176)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCHHHHH-hhC
Confidence 555677777777777777777777776 666
No 18
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=93.24 E-value=13 Score=42.88 Aligned_cols=189 Identities=19% Similarity=0.248 Sum_probs=118.7
Q ss_pred HHHHHHHHHHhhhccCCCChhhHHHHHHHHHHHHhh---cCChhHHHHHHHHHHHh---cccCCccchhhHHHHHHHH--
Q 001144 276 WLISLGNAFTEQYVLYTPDDDHSALLHRCLGILLQK---VADRNYVCDKIDWMYKQ---ANIAIPTNRLGLAKAMGLV-- 347 (1141)
Q Consensus 276 W~~~L~~el~~ql~~y~~~~~eK~fL~k~lG~~L~~---~~~~~~V~~~L~~ll~~---~~~~~~~ereG~A~~~G~~-- 347 (1141)
+...|...+.+-+. .+.+.|.....+++|++.-. ..+.+-|-+.+...|.. -......-|..|+.|+|+|
T Consensus 83 ~~~tL~~~~~k~lk--kg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~f 160 (309)
T PF05004_consen 83 RRETLLDALLKSLK--KGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTF 160 (309)
T ss_pred HHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHH
Confidence 33444444444432 34558999999999887433 34555544444444432 1223345678899999987
Q ss_pred -hhcCHHHHHHHHHHHHhhhccccchhhhccccCccc-----ccchHhHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 001144 348 -AASHLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYR-----MEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTN 421 (1141)
Q Consensus 348 -A~~Hld~vL~~Le~~~k~~~~~~~~~~~~~~k~~~~-----~~e~~~~ks~l~l~YG~va~~ap~~~l~~rve~~I~~~ 421 (1141)
+....+.+.+.++.+.. .|. ..+.+..+. ..+...+.++.+.++|-++...|+..+...++..+ +
T Consensus 161 v~~~d~~~~~~~~~~le~-----if~--~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~-~- 231 (309)
T PF05004_consen 161 VGGSDEEETEELMESLES-----IFL--LSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEAL-P- 231 (309)
T ss_pred hhcCChhHHHHHHHHHHH-----HHH--HHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-H-
Confidence 34566777744433321 000 011111110 11345689999999999999999988766566554 2
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCHHHHHHHHHHHhccC
Q 001144 422 MLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGRE 478 (1141)
Q Consensus 422 i~~~~~~~kd~~lK~s~l~si~~i~~al~~~~~~~~~f~f~~k~eLl~~l~~~i~~E 478 (1141)
.+..++.+.|..++.+-=.+|.+|-..... ...+|.|...++|++.+-.+-...
T Consensus 232 ~l~~lL~s~d~~VRiAAGEaiAll~E~~~~---~~~~~~~~~~~~l~~~l~~La~dS 285 (309)
T PF05004_consen 232 ALSELLDSDDVDVRIAAGEAIALLYELARD---HEEDFLYEDMEELLEQLRELATDS 285 (309)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhhc---ccccccccCHHHHHHHHHHHHHhc
Confidence 344455788999999999999998776543 223578888999999888888755
No 19
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.17 E-value=11 Score=46.65 Aligned_cols=392 Identities=16% Similarity=0.135 Sum_probs=224.6
Q ss_pred hhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCChhhhhhhhcchhHHHHHhhcCCCCCChhHHH
Q 001144 646 CLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFN 725 (1141)
Q Consensus 646 ~lG~lvg~l~p~C~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~ 725 (1141)
.+|..=......-+|+++-||-..--.|..+.+. +.. ..+.+-+..+..+++.-........-.-+.
T Consensus 87 ~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~--------~~~-----~~wpelLp~L~~~L~s~d~n~~EgA~~AL~ 153 (885)
T KOG2023|consen 87 VLDYIKSECLHGLGDASPLIRATVGIVITTIAST--------GGL-----QHWPELLPQLCELLDSPDYNTCEGAFGALQ 153 (885)
T ss_pred HHHHHHHHHHhhccCchHHHHhhhhheeeeeecc--------ccc-----ccchhHHHHHHHHhcCCcccccchhHHHHH
Confidence 5666666666777899999988766555544311 111 223333444444433211111111122225
Q ss_pred HHHHHHHhhCChHHHHHHHH----HHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhcCcHHH
Q 001144 726 RIVSSVCILLTKDELVATLH----SCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHL 801 (1141)
Q Consensus 726 ~i~~~~~k~L~~~el~~li~----tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i~~~~~ 801 (1141)
+||..-++.|..+=++..+- ..++=...+++.--.-|..-+|+++-.+...+--. +..-++.+|.-. ...++.+
T Consensus 154 KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~-iD~Fle~lFala-nD~~~eV 231 (885)
T KOG2023|consen 154 KICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVH-IDKFLEILFALA-NDEDPEV 231 (885)
T ss_pred HHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHH-HHHHHHHHHHHc-cCCCHHH
Confidence 56555556555533333332 23333344444333445556788887777777333 666777776544 7788999
Q ss_pred HHHHHHHHHHhhhcccchhhHHHHhhhhcccccccccccccCCCChhhHHHHhhcCcchHHHHHHHHHHHHccCCCccCC
Q 001144 802 RLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGD 881 (1141)
Q Consensus 802 r~~~l~ai~lLa~~h~~~Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~aLa~~~~l~~~vL~~LL~~L~~~p~~~e~ 881 (1141)
|+.+=+|+..|..-+|+..+. +| ..|+++.|.+-+ +.
T Consensus 232 Rk~vC~alv~Llevr~dkl~p-hl------------------------------------~~IveyML~~tq------d~ 268 (885)
T KOG2023|consen 232 RKNVCRALVFLLEVRPDKLVP-HL------------------------------------DNIVEYMLQRTQ------DV 268 (885)
T ss_pred HHHHHHHHHHHHHhcHHhccc-ch------------------------------------HHHHHHHHHHcc------Cc
Confidence 999999999999999987764 32 256777776533 10
Q ss_pred CCCCCCCCCCCCcccchhhHHHHHHHHHHHHhcCCcchHHHHHHhhhHHHHHHHHHHhhhccC----C--------CC--
Q 001144 882 MEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGL----A--------SS-- 947 (1141)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~~plaAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~----~--------~~-- 947 (1141)
.+ -+++-|--....+-..+ .++.++..+.++|.-.||-...|.=.- . |.
T Consensus 269 ---dE------------~VALEACEFwla~aeqp--i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDre 331 (885)
T KOG2023|consen 269 ---DE------------NVALEACEFWLALAEQP--ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDRE 331 (885)
T ss_pred ---ch------------hHHHHHHHHHHHHhcCc--CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchh
Confidence 00 13566766666666677 899999999999999998887775331 1 00
Q ss_pred CCCChhHHHHHHHHHHHHhh-CChhHHHHHH---hcCCCC---chhhhHhhHHHHHHHHhhcCChhHHHHHHHHHhhhcC
Q 001144 948 GQHEPLRAILTSFQAFCECV-GDLEMRKILA---RDGEQN---DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINR 1020 (1141)
Q Consensus 948 ~~~~P~~~aleAlk~lL~~~-g~~~~~~~le---~~g~W~---~~~~~~~GV~lLAram~~~~~~~~~~i~~~L~~~L~s 1020 (1141)
+.+.| |..-.-..+.-... ..++.....+ ..+.|+ ...... -.||.- +....++.++-++...|.+
T Consensus 332 eDIkP-Rfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaL---DVLanv---f~~elL~~l~PlLk~~L~~ 404 (885)
T KOG2023|consen 332 EDIKP-RFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAAL---DVLANV---FGDELLPILLPLLKEHLSS 404 (885)
T ss_pred hhccc-hhhhchhccCccccccccccccccccccccccccHhhccHHHH---HHHHHh---hHHHHHHHHHHHHHHHcCc
Confidence 12334 11111111111110 1111111111 123387 222221 224442 2223344444444444444
Q ss_pred Ccccch---hHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccch----hhhhhHHHHHHHHH
Q 001144 1021 QQRFQR---EAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI----HIHQYATQVLSVIL 1093 (1141)
Q Consensus 1021 ~~~~qR---i~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~----kv~~~~~~lL~all 1093 (1141)
..=..| +.|.+.++| .|-.+-..-+.+++-.|.+-+.|-.|.||.+.-=-|+.-+.. .-.+|...+|.-++
T Consensus 405 ~~W~vrEagvLAlGAIAE--GcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll 482 (885)
T KOG2023|consen 405 EEWKVREAGVLALGAIAE--GCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLL 482 (885)
T ss_pred chhhhhhhhHHHHHHHHH--HHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHH
Confidence 332333 345566777 443322223345888999999999999998886666644332 44578888999999
Q ss_pred hhccCCChhHHHHHHHHHHHHhccCCCC
Q 001144 1094 ALLDDLDESVQLTAVSCLLTILKSSSKD 1121 (1141)
Q Consensus 1094 ~~l~d~~~~vvleam~~L~~lL~~l~~~ 1121 (1141)
.-+-|.+..|.-.|-.+...+-+..+.+
T Consensus 483 ~~llD~NK~VQEAAcsAfAtleE~A~~e 510 (885)
T KOG2023|consen 483 RRLLDSNKKVQEAACSAFATLEEEAGEE 510 (885)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHhccch
Confidence 9998889999999999999888887766
No 20
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.39 E-value=46 Score=45.26 Aligned_cols=285 Identities=13% Similarity=0.110 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhcccc-chhhHhHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhccc
Q 001144 739 ELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNEL-SETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTN 817 (1141)
Q Consensus 739 el~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l-~e~dV~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~h~ 817 (1141)
-+.+.+..++.+|++..--.-+++|-.|..+++.|-.+- .++ +|||-..++..|..|.+ .+|...-++-+.|++-
T Consensus 1036 y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~-lpelw~~~fRvmDDIKE-sVR~aa~~~~~~lsKl-- 1111 (1702)
T KOG0915|consen 1036 YLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEK-LPELWEAAFRVMDDIKE-SVREAADKAARALSKL-- 1111 (1702)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH--
Confidence 344555678899999877777999999999998765543 344 99999999999988884 7887777776666532
Q ss_pred chhhHHHHhhhhcccccccccccccCCCChhhHHHHhhcCcchHHHHHHHHHHHHccCCCccCCCCCCCCCCCCCCcccc
Q 001144 818 SKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWID 897 (1141)
Q Consensus 818 ~~Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~aLa~~~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~ 897 (1141)
+- -+ | | ..++.-+..++..+|..|-..... ++-+.
T Consensus 1112 ---~v--r~---~------d-----------------~~~~~~~~~~l~~iLPfLl~~gim------------s~v~e-- 1146 (1702)
T KOG0915|consen 1112 ---CV--RI---C------D-----------------VTNGAKGKEALDIILPFLLDEGIM------------SKVNE-- 1146 (1702)
T ss_pred ---Hh--hh---c------c-----------------cCCcccHHHHHHHHHHHHhccCcc------------cchHH--
Confidence 11 11 1 0 144455666677666665532211 11100
Q ss_pred hhhHHHHHHHHHHHHhcCCcchHHHHHHhhhHHHHHHHHHHhhhccCCCCCCCChhHHHHHHHHHHHHhhCChhHHHHHH
Q 001144 898 DDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILA 977 (1141)
Q Consensus 898 ~~~plaAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~lL~~~g~~~~~~~le 977 (1141)
+.=.++.++--+-. .+.++++-+||.|.-.|+.-++ .+.|.-.-.-|++. +.+..+.|+
T Consensus 1147 --vr~~si~tl~dl~K----ssg~~lkP~~~~LIp~ll~~~s---------~lE~~vLnYls~r~------~~~e~ealD 1205 (1702)
T KOG0915|consen 1147 --VRRFSIGTLMDLAK----SSGKELKPHFPKLIPLLLNAYS---------ELEPQVLNYLSLRL------INIETEALD 1205 (1702)
T ss_pred --HHHHHHHHHHHHHH----hchhhhcchhhHHHHHHHHHcc---------ccchHHHHHHHHhh------hhhHHHHHH
Confidence 11234445544433 3445777789999887765442 34554444455444 333344444
Q ss_pred hc---CCCCchhhhHhhHHHHHHHHhhcCChhHHHHHHHHHhhhcC-CcccchhHHHHHHHHhhhccC-CccchHHHHHH
Q 001144 978 RD---GEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINR-QQRFQREAAAAALSEFVRYSG-GFDSLLEQMVE 1052 (1141)
Q Consensus 978 ~~---g~W~~~~~~~~GV~lLAram~~~~~~~~~~i~~~L~~~L~s-~~~~qRi~a~af~sELL~~~~-~~~~l~~~~l~ 1052 (1141)
.. +.=.+ --.+.|..+-+. -...-+-.+.--+...+++ ..-.-|+.++-|++-|..... .-.+....++.
T Consensus 1206 t~R~s~akss--pmmeTi~~ci~~---iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~ 1280 (1702)
T KOG0915|consen 1206 TLRASAAKSS--PMMETINKCINY---IDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLR 1280 (1702)
T ss_pred HHHHhhhcCC--cHHHHHHHHHHh---hhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHH
Confidence 32 22111 112222222111 1111233333344444433 455778888888888776654 44455566999
Q ss_pred HHhhhcCCCCchhhhhhccccCCccch----hhhhhHHHHHHHHHhhccC
Q 001144 1053 ALCRHVSDESPTVRGLCLRGLVQIPSI----HIHQYATQVLSVILALLDD 1098 (1141)
Q Consensus 1053 ~L~~~l~D~~~~VR~lslrGLgnl~~~----kv~~~~~~lL~all~~l~d 1098 (1141)
.|.-+++|-|+.||+..=-.+|.++.- +..++...++.-.+.-.++
T Consensus 1281 al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es 1330 (1702)
T KOG0915|consen 1281 ALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDES 1330 (1702)
T ss_pred HHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCC
Confidence 999999999999999888788876442 5566666666655554443
No 21
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=92.23 E-value=35 Score=41.79 Aligned_cols=460 Identities=15% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhccchHHHHHHHHHHhhhccCCCChhhHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhcccCCccchhh
Q 001144 260 IINFLAESLDVVQETDWLISLGNAFTEQYVLYTPDDDHSALLHRCLGILLQKVADRNYVCDKIDWMYKQANIAIPTNRLG 339 (1141)
Q Consensus 260 Ll~fL~~sl~~i~d~~W~~~L~~el~~ql~~y~~~~~eK~fL~k~lG~~L~~~~~~~~V~~~L~~ll~~~~~~~~~ereG 339 (1141)
|+.+|.+-=..-.||+|..+.+..-+-|+ | +.......++.-+.-.=.+.+..+-.+||.
T Consensus 326 lL~LL~~q~ed~~~DdWn~smaA~sCLql--f------------------aq~~gd~i~~pVl~FvEqni~~~~w~nrea 385 (858)
T COG5215 326 LLSLLEKQGEDYYGDDWNPSMAASSCLQL--F------------------AQLKGDKIMRPVLGFVEQNIRSESWANREA 385 (858)
T ss_pred HHHHHHhcCCCccccccchhhhHHHHHHH--H------------------HHHhhhHhHHHHHHHHHHhccCchhhhHHH
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHhhhccccchhhhccccCcccccchHhHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 001144 340 LAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALVG 419 (1141)
Q Consensus 340 ~A~~~G~~A~~Hld~vL~~Le~~~k~~~~~~~~~~~~~~k~~~~~~e~~~~ks~l~l~YG~va~~ap~~~l~~rve~~I~ 419 (1141)
-+.|||-+=.+--..-+.++ ... ...++.+.++|+.- .+|+|-.-|+|.+|.+.+..+=. +.|+.
T Consensus 386 avmAfGSvm~gp~~~~lT~~---V~q----alp~i~n~m~D~~l-----~vk~ttAwc~g~iad~va~~i~p---~~Hl~ 450 (858)
T COG5215 386 AVMAFGSVMHGPCEDCLTKI---VPQ----ALPGIENEMSDSCL-----WVKSTTAWCFGAIADHVAMIISP---CGHLV 450 (858)
T ss_pred HHHHhhhhhcCccHHHHHhh---HHh----hhHHHHHhccccee-----ehhhHHHHHHHHHHHHHHHhcCc---ccccc
Q ss_pred HHHHHHHhhccc-hhHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCHHHHHHHHHHHhccCCCCCcCCchHHHHHHHHHHH
Q 001144 420 TNMLSRLLHVRH-HTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALAL 498 (1141)
Q Consensus 420 ~~i~~~~~~~kd-~~lK~s~l~si~~i~~al~~~~~~~~~f~f~~k~eLl~~l~~~i~~Ep~~~L~s~~~~ll~~r~~a~ 498 (1141)
.-.........| +..--+-=.+..-+..-+.+.....++|..+.-..+++-+..--...-+++ . .|.-++
T Consensus 451 ~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~---n------~R~s~f 521 (858)
T COG5215 451 LEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNES---N------LRVSLF 521 (858)
T ss_pred HHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccch---h------HHHHHH
Q ss_pred HHhhhhcccCCCCChhHHHHH-------HHHhhhccc--cCCCCCCchHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHH-
Q 001144 499 SACTTLVTVEPKLTIETRNHV-------MKATLGFFA--LPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLH- 568 (1141)
Q Consensus 499 ~ait~L~~L~P~l~~e~~~~l-------l~~clsv~~--lP~~~~~~~~~l~~~l~~ll~~ll~~~~~~~~~~~~~Lq~- 568 (1141)
.|+.+|+-.-|-=-.+....+ ++.|+||.. +..++.-..+.+..++...|.+|+.+++.+ .+...+
T Consensus 522 saLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~----ie~v~D~ 597 (858)
T COG5215 522 SALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRD----IEDVEDQ 597 (858)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC----cccHHHH
Q ss_pred HHHhhhhhhcCChhHHHhhHHHHHHHHHHHHHHhccccccccCCCCCcccccchhhccccCCCCCCCccCCCchhhhhhh
Q 001144 569 ILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLG 648 (1141)
Q Consensus 569 il~~L~pWl~S~k~~EReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~f~~~p~~~~~p~~~~~~lG 648 (1141)
+.+.+..-+.|.|.---.--|-....-|---.+..+..|-. +|-+.---...+...| -+-
T Consensus 598 lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~-----~fiPyl~~aln~~d~~---------------v~~ 657 (858)
T COG5215 598 LMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYAS-----KFIPYLTRALNCTDRF---------------VLN 657 (858)
T ss_pred HHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHhcchhHH---------------HHH
Q ss_pred hHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCChhhhhhhhcchhHHHHHhhcCCCCCChhHHHHHH
Q 001144 649 NRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFNRIV 728 (1141)
Q Consensus 649 ~lvg~l~p~C~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~i~ 728 (1141)
.-||..+=.-.--+.+++..|-.-+..|- +.+.. +...+.+++. --++|-+|+
T Consensus 658 ~avglvgdlantl~~df~~y~d~~ms~Lv--Q~lss-----------~~~~R~lKPa--------------iLSvFgDIA 710 (858)
T COG5215 658 SAVGLVGDLANTLGTDFNIYADVLMSSLV--QCLSS-----------EATHRDLKPA--------------ILSVFGDIA 710 (858)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH--HHhcC-----------hhhccccchH--------------HHHHHHHHH
Q ss_pred HHHHhhCChHHHHHHHHHHHHhccCCCchhHH--------HHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhcC---
Q 001144 729 SSVCILLTKDELVATLHSCTTAICDRTKQSAE--------GAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHIT--- 797 (1141)
Q Consensus 729 ~~~~k~L~~~el~~li~tll~~L~d~~~~~~~--------~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i~--- 797 (1141)
..++-.+-+.- +.|+.++....+.++++.. .+-+.+++-+---|.....+ |.-+.-.++.-...|.
T Consensus 711 laiga~F~~YL--~~im~L~qqas~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr-~~~v~Pyv~sif~~i~~ia 787 (858)
T COG5215 711 LAIGANFESYL--DMIMMLFQQASELDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNR-VRSVLPYVISIFHKIGMIA 787 (858)
T ss_pred HHHhhhHHHHH--HHHHHHHHHHhccCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhh-HHHhhhHHHHHHHHHHHhh
Q ss_pred ------cHHHHHHHHHHHHHhhhcccc
Q 001144 798 ------DKHLRLETLGAISCLAENTNS 818 (1141)
Q Consensus 798 ------~~~~r~~~l~ai~lLa~~h~~ 818 (1141)
+.++ +.++.-|--||..+|+
T Consensus 788 eDp~~se~~t-raalGLigDla~mfpk 813 (858)
T COG5215 788 EDPNGSEAHT-RAALGLIGDLAGMFPK 813 (858)
T ss_pred cCCccchhHH-HHHHHHHHHHHHhCCC
No 22
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=91.83 E-value=10 Score=42.73 Aligned_cols=111 Identities=10% Similarity=0.091 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhccc-chhhHHHHhhhhccccccccc
Q 001144 760 EGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTN-SKIVFNEVLATAGKDIVTKDI 838 (1141)
Q Consensus 760 ~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~h~-~~Vv~~~LL~~~~~~~~~~d~ 838 (1141)
...=.++..+++.+...+.+. =++.+.++.+.+.+=.+|+.---+-+.+..+.+.++ .+.++ .+..+. .|=|++
T Consensus 100 ~~~~~ll~~l~~~~~~~l~~~-~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e-~lFd~~---~cYFPI 174 (262)
T PF14500_consen 100 YAVYQLLDSLLENHREALQSM-GDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAE-DLFDVF---SCYFPI 174 (262)
T ss_pred HHHHHHHHHHHHHhHHHHHhc-hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHH-HHHHHh---hheeee
Confidence 344445566666655555322 356788888888888899988888888888887766 44443 444211 144555
Q ss_pred cc---ccCCCCh--hh----HHHHhhcCcchHHHHHHHHHHHHccC
Q 001144 839 SR---LRGGWPM--QD----AFHAFSQHAVLSFLFLEHLISALNQT 875 (1141)
Q Consensus 839 ~~---~~~plP~--d~----~W~aLa~~~~l~~~vL~~LL~~L~~~ 875 (1141)
+= .+-|... +. +=+++++.+..++..+..|++||...
T Consensus 175 ~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~ 220 (262)
T PF14500_consen 175 TFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDST 220 (262)
T ss_pred eeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCC
Confidence 31 0111111 11 78899999999999999999999943
No 23
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.82 E-value=45 Score=42.22 Aligned_cols=111 Identities=19% Similarity=0.161 Sum_probs=81.1
Q ss_pred hhHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccC--CccchHHHHHHHHhhhcCCCCchhhhhhccccCCccch---
Q 001144 1005 KEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSG--GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--- 1079 (1141)
Q Consensus 1005 ~~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~--~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~--- 1079 (1141)
..++.++.|+--.+++|.-++|-+|+-.|--.+.-|+ ...+++.+.+..+.+-..||+-.||.-.=--+|.++.+
T Consensus 360 ~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e 439 (859)
T KOG1241|consen 360 DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPE 439 (859)
T ss_pred cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchh
Confidence 3577788888888889999999988877777777777 45566667888888888899999997777777776554
Q ss_pred --hhhhhHHHHHHHHHhhccCCChh---HHHHHHHHHHHHhc
Q 001144 1080 --HIHQYATQVLSVILALLDDLDES---VQLTAVSCLLTILK 1116 (1141)
Q Consensus 1080 --kv~~~~~~lL~all~~l~d~~~~---vvleam~~L~~lL~ 1116 (1141)
.-..|-+.++++++.|+-| ... -+.-|..+|..=..
T Consensus 440 ~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~ 480 (859)
T KOG1241|consen 440 AIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAY 480 (859)
T ss_pred hcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHH
Confidence 1134668889999999986 333 33455566654443
No 24
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=91.56 E-value=14 Score=48.95 Aligned_cols=102 Identities=20% Similarity=0.134 Sum_probs=72.2
Q ss_pred HHHHHhhcCChhHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccC
Q 001144 995 VAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLV 1074 (1141)
Q Consensus 995 LAram~~~~~~~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLg 1074 (1141)
.++++.....+ ..+...+...|++++..=|..|+-.+.++ .++ +.+..|...++|+++.||.-+++.||
T Consensus 795 A~~aLg~~g~~--~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l-~~~--------~a~~~L~~~L~D~~~~VR~~A~~aL~ 863 (897)
T PRK13800 795 ALAALAELGCP--PDDVAAATAALRASAWQVRQGAARALAGA-AAD--------VAVPALVEALTDPHLDVRKAAVLALT 863 (897)
T ss_pred HHHHHHhcCCc--chhHHHHHHHhcCCChHHHHHHHHHHHhc-ccc--------chHHHHHHHhcCCCHHHHHHHHHHHh
Confidence 44555555543 23334567778777777788777777654 222 24567778889999999999999999
Q ss_pred CccchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHH
Q 001144 1075 QIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLT 1113 (1141)
Q Consensus 1075 nl~~~kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~ 1113 (1141)
.+. .-+...+++...++|.|..|..+|...|..
T Consensus 864 ~~~------~~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 864 RWP------GDPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred ccC------CCHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 972 124456777788888899999999998864
No 25
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=91.50 E-value=0.16 Score=48.60 Aligned_cols=106 Identities=19% Similarity=0.161 Sum_probs=75.5
Q ss_pred HHHHHHhhhcCCcccchhHHHHHHHHhhhc-cCCccchHH-HHHHHHhhhcCCCCchhhhhhccccCCccchh---hhh-
Q 001144 1010 ICLILTKSINRQQRFQREAAAAALSEFVRY-SGGFDSLLE-QMVEALCRHVSDESPTVRGLCLRGLVQIPSIH---IHQ- 1083 (1141)
Q Consensus 1010 i~~~L~~~L~s~~~~qRi~a~af~sELL~~-~~~~~~l~~-~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~k---v~~- 1083 (1141)
++..+...++++...-|..|...+..+-.. +.......+ ..+..|.+-+.|+++.||.-++..|+|++.+. ...
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 445556666666666777777777776655 222223333 47777888888999999999999999998762 111
Q ss_pred hHHHHHHHHHhhccCCChhHHHHHHHHHHHHh
Q 001144 1084 YATQVLSVILALLDDLDESVQLTAVSCLLTIL 1115 (1141)
Q Consensus 1084 ~~~~lL~all~~l~d~~~~vvleam~~L~~lL 1115 (1141)
....+++.+...+++.+..+.-.+...|..+.
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 22347888888888888899999998888764
No 26
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.41 E-value=6.3 Score=50.74 Aligned_cols=135 Identities=22% Similarity=0.215 Sum_probs=81.0
Q ss_pred HHHHHHhhhhcccCCCCChhHHHHHHHHhhhccc----c-CCCCCCch-HHHHHHHHHHHHHHHhhcCCCCCCCHHHHHH
Q 001144 495 ALALSACTTLVTVEPKLTIETRNHVMKATLGFFA----L-PNDPIDVV-NPLIDNLITLLCAILLTSGEDGRSRADQLLH 568 (1141)
Q Consensus 495 ~~a~~ait~L~~L~P~l~~e~~~~ll~~clsv~~----l-P~~~~~~~-~~l~~~l~~ll~~ll~~~~~~~~~~~~~Lq~ 568 (1141)
..|+..++.+++=+ +.|.-..+++.|.++|+ - |+..+... +.-+..+..+.+-|+.+++- .+.++.
T Consensus 390 ~Aa~~~l~~~~~KR---~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~-----~~~mE~ 461 (1010)
T KOG1991|consen 390 TAALDFLTTLVSKR---GKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPY-----KSQMEY 461 (1010)
T ss_pred HHHHHHHHHHHHhc---chhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCch-----HHHHHH
Confidence 44666666666443 12333445555555554 2 22222222 23455566665444455542 356666
Q ss_pred HH-HhhhhhhcCChhHHHhhHHHHHHHHHHHHHHhccccccccCCCCCcccccchhhccccCCCCCCCccCCCchhhhhh
Q 001144 569 IL-RQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCL 647 (1141)
Q Consensus 569 il-~~L~pWl~S~k~~EReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~f~~~p~~~~~p~~~~~~l 647 (1141)
|+ .|.-|-++|+-.|-|.||+.++. +|.+ .+.+.+.+++
T Consensus 462 flv~hVfP~f~s~~g~Lrarac~vl~----~~~~--------------------~df~d~~~l~---------------- 501 (1010)
T KOG1991|consen 462 FLVNHVFPEFQSPYGYLRARACWVLS----QFSS--------------------IDFKDPNNLS---------------- 501 (1010)
T ss_pred HHHHHhhHhhcCchhHHHHHHHHHHH----HHHh--------------------ccCCChHHHH----------------
Confidence 54 89999999999999999999853 2332 3333222221
Q ss_pred hhHHHHhhcCccCCChhHHHHHHHHHHHHH
Q 001144 648 GNRVIMYLPRCADTDSEVRKISAQILDQLF 677 (1141)
Q Consensus 648 G~lvg~l~p~C~D~~~~ir~~A~~~i~~Ll 677 (1141)
--+=+....+|.|++-.||-+|+.|+..+.
T Consensus 502 ~ale~t~~~l~~d~~lPV~VeAalALq~fI 531 (1010)
T KOG1991|consen 502 EALELTHNCLLNDNELPVRVEAALALQSFI 531 (1010)
T ss_pred HHHHHHHHHhccCCcCchhhHHHHHHHHHH
Confidence 222234455677999999999999999886
No 27
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=89.99 E-value=0.86 Score=41.49 Aligned_cols=85 Identities=31% Similarity=0.379 Sum_probs=58.4
Q ss_pred HHHHhhh-cCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccchhhhhhHHHHHH
Q 001144 1012 LILTKSI-NRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLS 1090 (1141)
Q Consensus 1012 ~~L~~~L-~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~kv~~~~~~lL~ 1090 (1141)
..|+..+ ++++..-|..|+-.+.++ +. .+.+..|.+.++|+|+.||..+++.||.+.. +..++
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~-----~~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------~~~~~ 65 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGEL-----GD----PEAIPALIELLKDEDPMVRRAAARALGRIGD-------PEAIP 65 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCC-----TH----HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-------HHTHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc-----CC----HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------HHHHH
Confidence 3456666 666667777666666532 11 3467778888899999999999999999842 34556
Q ss_pred HHHhhccCCCh-hHHHHHHHHHH
Q 001144 1091 VILALLDDLDE-SVQLTAVSCLL 1112 (1141)
Q Consensus 1091 all~~l~d~~~-~vvleam~~L~ 1112 (1141)
.+...+.+.++ .|...|+.+|+
T Consensus 66 ~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 66 ALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHhhcC
Confidence 66666665444 55678888775
No 28
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=89.51 E-value=1 Score=47.60 Aligned_cols=136 Identities=16% Similarity=0.187 Sum_probs=95.4
Q ss_pred HhhcCChhHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccc
Q 001144 999 VSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS 1078 (1141)
Q Consensus 999 m~~~~~~~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~ 1078 (1141)
++...+..+-+.+..+...|+++...=|.+|+..++.|+..-. . .+-..++..+...+.|+|+.||..+...+..+..
T Consensus 15 L~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-i-k~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 15 LCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-I-KVKGQLFSRILKLLVDENPEIRSLARSFFSELLK 92 (178)
T ss_pred HHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-e-eehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4566777788888899999999999999999999999998643 1 1223365777788899999999999888887765
Q ss_pred hhhhhhHHHHHHHHHhhccCCCh------hHHHHHHHHHHHHhccCC-CCCccchHHHHHHHhcc
Q 001144 1079 IHIHQYATQVLSVILALLDDLDE------SVQLTAVSCLLTILKSSS-KDAVEPILLNLSVRLRN 1136 (1141)
Q Consensus 1079 ~kv~~~~~~lL~all~~l~d~~~------~vvleam~~L~~lL~~l~-~~~~~~~l~~ia~rlR~ 1136 (1141)
.+-.......++.++..+.+..+ .-.-+=+....-++..++ ++.-..+.-.++.|+..
T Consensus 93 ~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~kl~~~~~~ 157 (178)
T PF12717_consen 93 KRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVEKLCQRFLN 157 (178)
T ss_pred hccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 42222234445555555554221 222344677778888888 66777777778777643
No 29
>PRK09687 putative lyase; Provisional
Probab=89.31 E-value=0.96 Score=51.42 Aligned_cols=89 Identities=20% Similarity=0.134 Sum_probs=47.0
Q ss_pred HHHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccchhhhhhHHHH
Q 001144 1009 TICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQV 1088 (1141)
Q Consensus 1009 ~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~kv~~~~~~l 1088 (1141)
..+..|++.++.+...=|..|+..+.++ .... ..++..|...+.|+++.||.-+++|||.+.. +.+
T Consensus 159 ~ai~~L~~~L~d~~~~VR~~A~~aLg~~---~~~~----~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-------~~a 224 (280)
T PRK09687 159 AAIPLLINLLKDPNGDVRNWAAFALNSN---KYDN----PDIREAFVAMLQDKNEEIRIEAIIGLALRKD-------KRV 224 (280)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhcC---CCCC----HHHHHHHHHHhcCCChHHHHHHHHHHHccCC-------hhH
Confidence 4455555666555554444444444443 1111 1244555566677777777777777776532 234
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHH
Q 001144 1089 LSVILALLDDLDESVQLTAVSCLLT 1113 (1141)
Q Consensus 1089 L~all~~l~d~~~~vvleam~~L~~ 1113 (1141)
++.++..+.+.+ +..++..+|+.
T Consensus 225 v~~Li~~L~~~~--~~~~a~~ALg~ 247 (280)
T PRK09687 225 LSVLIKELKKGT--VGDLIIEAAGE 247 (280)
T ss_pred HHHHHHHHcCCc--hHHHHHHHHHh
Confidence 555666665422 55555555544
No 30
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=88.97 E-value=68 Score=39.70 Aligned_cols=306 Identities=15% Similarity=0.146 Sum_probs=166.0
Q ss_pred hhCChHH-HHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhH--hHHHHHHHHHhhhcCcHHHHHHHHHHH
Q 001144 733 ILLTKDE-LVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDV--SRTTQSLLSAAVHITDKHLRLETLGAI 809 (1141)
Q Consensus 733 k~L~~~e-l~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV--~eIv~~i~~~L~~i~~~~~r~~~l~ai 809 (1141)
+.+.+.. ..++.-.+..||..++...-..|+..+..+.+...... +. + .+++..|..-+ ...+..+...+.+++
T Consensus 67 ~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~-~~-~~~~~l~~~i~~~L-~~~d~~Va~~A~~~L 143 (503)
T PF10508_consen 67 SALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAA-QL-LVDNELLPLIIQCL-RDPDLSVAKAAIKAL 143 (503)
T ss_pred hccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHH-HH-hcCccHHHHHHHHH-cCCcHHHHHHHHHHH
Confidence 3334444 66677788889988877666777777777766554433 22 2 45666666666 445678899999999
Q ss_pred HHhhhcccchhhHHHHhhhhcccccccccccccCCCChhhHHHHhhc-CcchHHHHHHHHHHHHccCCCccCCCCCCCCC
Q 001144 810 SCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQ-HAVLSFLFLEHLISALNQTPFVKGDMEKGDYS 888 (1141)
Q Consensus 810 ~lLa~~h~~~Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~aLa~-~~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~ 888 (1141)
.-|+++.. -.. .++ .... ...++..++. +...-.++++.+....+..+
T Consensus 144 ~~l~~~~~--~~~-~l~---------------~~~~-~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~------------ 192 (503)
T PF10508_consen 144 KKLASHPE--GLE-QLF---------------DSNL-LSKLKSLMSQSSDIVRCRVYELLVEIASHSP------------ 192 (503)
T ss_pred HHHhCCch--hHH-HHh---------------Ccch-HHHHHHHHhccCHHHHHHHHHHHHHHHhcCH------------
Confidence 99998743 343 554 2211 2336666666 44445555555554433111
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHhcCCcchHHHHHH--hhhHHHHHHHHHHhhhccCCCCCCCCh--hHHHHHHHHHHH
Q 001144 889 SHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEK--SYAPVLAALTLQLGSCHGLASSGQHEP--LRAILTSFQAFC 964 (1141)
Q Consensus 889 ~~~~~~~~~~~~plaAt~aL~Ell~~~~~~~~~av~~--~fp~Lf~aLL~ql~~~~~~~~~~~~~P--~~~aleAlk~lL 964 (1141)
+....+.. +|+.++-.| ..-|. ...++|.+..+-
T Consensus 193 -----------------------------~~~~~~~~sgll~~ll~eL-------------~~dDiLvqlnalell~~La 230 (503)
T PF10508_consen 193 -----------------------------EAAEAVVNSGLLDLLLKEL-------------DSDDILVQLNALELLSELA 230 (503)
T ss_pred -----------------------------HHHHHHHhccHHHHHHHHh-------------cCccHHHHHHHHHHHHHHH
Confidence 11112221 333333322 01111 123444444443
Q ss_pred HhhCChhHHHHHHhcCCCC-----------c---hhhhHhhHHHHHHHHhhcCChh----HHHHHHHHHhhhcCCcccch
Q 001144 965 ECVGDLEMRKILARDGEQN-----------D---KEKWINLIGDVAGCVSIKRPKE----VQTICLILTKSINRQQRFQR 1026 (1141)
Q Consensus 965 ~~~g~~~~~~~le~~g~W~-----------~---~~~~~~GV~lLAram~~~~~~~----~~~i~~~L~~~L~s~~~~qR 1026 (1141)
. ..+-..+|.+.|.-+ + ..-+.-|.-.--..|+...+.. .|.+++.+...+++.....+
T Consensus 231 ~---~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~ 307 (503)
T PF10508_consen 231 E---TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIR 307 (503)
T ss_pred c---ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence 3 112233344433321 1 1224444433334455444433 37778888888889888999
Q ss_pred hHHHHHHHHhhhccCCccch-------HHHHHHHHhhhcCCCCchhhhhhccccCCccch-------hh--------hhh
Q 001144 1027 EAAAAALSEFVRYSGGFDSL-------LEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-------HI--------HQY 1084 (1141)
Q Consensus 1027 i~a~af~sELL~~~~~~~~l-------~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~-------kv--------~~~ 1084 (1141)
.+|+--+.-+=.+..+...+ .+.++.........+...+|.-++..++++... ++ +.+
T Consensus 308 ~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~ 387 (503)
T PF10508_consen 308 EVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESL 387 (503)
T ss_pred HHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHh
Confidence 99886666443333232222 234666777777777788999999999988332 11 111
Q ss_pred HHHHHH-HHHhhccCCChhHHHHHHHHHHHHhcc
Q 001144 1085 ATQVLS-VILALLDDLDESVQLTAVSCLLTILKS 1117 (1141)
Q Consensus 1085 ~~~lL~-all~~l~d~~~~vvleam~~L~~lL~~ 1117 (1141)
...-+. .+++.+..+=+++-+.++..|..+..+
T Consensus 388 ~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 388 SGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred cCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 111111 444444444457777777777776654
No 31
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=88.80 E-value=2.1 Score=54.28 Aligned_cols=175 Identities=14% Similarity=0.119 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHhhCChhHHHHHHh--cCCCC-chhhhHhhHHHHHHHHhhcCChhHHHHHHHHHhhhcCCcccchhHHH
Q 001144 954 RAILTSFQAFCECVGDLEMRKILAR--DGEQN-DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAA 1030 (1141)
Q Consensus 954 ~~aleAlk~lL~~~g~~~~~~~le~--~g~W~-~~~~~~~GV~lLAram~~~~~~~~~~i~~~L~~~L~s~~~~qRi~a~ 1030 (1141)
..-++|+|..+...-+.+.+..+-- -..|. .--..-.-+.+=-.-.++.+|.+..--++.+.+-++++++.=|..|+
T Consensus 34 ~~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~Al 113 (757)
T COG5096 34 YKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFAL 113 (757)
T ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHH
Confidence 3456777777666544333322211 12232 11112222222223345567777777788888888888888888888
Q ss_pred HHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccchhhhhhHHH-HHHHHHhhccCCChhHHHHHHH
Q 001144 1031 AALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQ-VLSVILALLDDLDESVQLTAVS 1109 (1141)
Q Consensus 1031 af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~kv~~~~~~-lL~all~~l~d~~~~vvleam~ 1109 (1141)
=|++-+ +...+.+.+++.+.+.+.|+++-||+-+.=+++++-..+.+.+... ........+.|.|..|+..|+.
T Consensus 114 R~ls~l-----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~ 188 (757)
T COG5096 114 RTLSLL-----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALA 188 (757)
T ss_pred HHHHhc-----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHH
Confidence 777654 3556778888888888999999999888877777754433323222 3444555556778889999998
Q ss_pred HHHHHhccCCCCCccchHHHHHHHhccc
Q 001144 1110 CLLTILKSSSKDAVEPILLNLSVRLRNL 1137 (1141)
Q Consensus 1110 ~L~~lL~~l~~~~~~~~l~~ia~rlR~l 1137 (1141)
+|..+=.. ...+++..++.++-.|
T Consensus 189 sl~~i~~e----~a~~~~~~~~~~i~~l 212 (757)
T COG5096 189 SLAEIDPE----LAHGYSLEVILRIPQL 212 (757)
T ss_pred HHHHhchh----hhhhHHHHHHHHhhhc
Confidence 88776554 4555666666555443
No 32
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.05 E-value=1.1e+02 Score=40.89 Aligned_cols=300 Identities=15% Similarity=0.108 Sum_probs=178.5
Q ss_pred CcHHHHHHHHHHHHHh-hhcccchhhHHHHhhhhcccccccccccccCCCChhhHHHHhhcCcchHHHHHHHHHHHHccC
Q 001144 797 TDKHLRLETLGAISCL-AENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQT 875 (1141)
Q Consensus 797 ~~~~~r~~~l~ai~lL-a~~h~~~Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~aLa~~~~l~~~vL~~LL~~L~~~ 875 (1141)
.....+...|.+++.+ .+..+.+|+. .|.++++... -+.|...+....-.+|+.+.--
T Consensus 585 ~~l~~~~~~L~~i~~~~~~~t~~dv~~-~l~~s~~e~a--------------------s~~~~s~~~~~~~slLdl~~~~ 643 (1176)
T KOG1248|consen 585 KILASRSTVLEIIRVDYFTVTPTDVVG-SLKDSAGELA--------------------SDLDESVASFKTLSLLDLLIAL 643 (1176)
T ss_pred ccHHHHHHHHHHHHHHHhhcccHHHHH-HHHHHHHhHh--------------------ccchhhhhhHHHHHHHHHHHhh
Confidence 3567889999999944 4455577775 7775555311 1122245555555555555543
Q ss_pred CCccC-CCCCCCCCC-CCCCcccchhhHHHHHHHHHHHHhcCCcchHHHHHHhhhHHHHHHHHHHhhhccCCCCCCCChh
Q 001144 876 PFVKG-DMEKGDYSS-HSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPL 953 (1141)
Q Consensus 876 p~~~e-~~~~~~~~~-~~~~~~~~~~~plaAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~ 953 (1141)
-++++ ++-.+-++. +-.....++-+=--|-.-|.|++..+ +....+.+.--.++-.|+--+..+ ..|+
T Consensus 644 a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~--s~~~~~~q~i~~I~n~L~ds~qs~--------~~~~ 713 (1176)
T KOG1248|consen 644 APVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSP--SGEGLVEQRIDDIFNSLLDSFQSS--------SSPA 713 (1176)
T ss_pred hccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCC--chhhHHHHHHHHHHHHHHHHHhcc--------chHH
Confidence 33332 110011100 00111112222345777888888887 888888888888888775444332 2343
Q ss_pred -HHHHHHHHHHHHhhCChhHHHHHHh-------cCCCC--chhhhHhhHHHHHH-HHhhc--CChhHHHHHHHHHhhhcC
Q 001144 954 -RAILTSFQAFCECVGDLEMRKILAR-------DGEQN--DKEKWINLIGDVAG-CVSIK--RPKEVQTICLILTKSINR 1020 (1141)
Q Consensus 954 -~~aleAlk~lL~~~g~~~~~~~le~-------~g~W~--~~~~~~~GV~lLAr-am~~~--~~~~~~~i~~~L~~~L~s 1020 (1141)
...+.+++.++...+.|...-.... ...-+ ...+=.+-...+++ .+..- +.+ ...+++..++.+.-
T Consensus 714 ~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~lnefl~~Isa 792 (1176)
T KOG1248|consen 714 QASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILNEFLSIISA 792 (1176)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHHHHHHHHHh
Confidence 4578889999998885543332222 12222 11222222222332 11111 222 45566666666655
Q ss_pred C--cccchhHHH--HHHHHhhhccC--CccchHHHHHHHHhhhcCCCCchhhhhhccccCCc----cchhhhhhHHHHHH
Q 001144 1021 Q--QRFQREAAA--AALSEFVRYSG--GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQI----PSIHIHQYATQVLS 1090 (1141)
Q Consensus 1021 ~--~~~qRi~a~--af~sELL~~~~--~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl----~~~kv~~~~~~lL~ 1090 (1141)
. .+.+|.+|. ..++-.+.... .+...+..+++....|+...++.||..+++++.-. +...+..|.+++|+
T Consensus 793 gl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~ 872 (1176)
T KOG1248|consen 793 GLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLP 872 (1176)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHH
Confidence 4 566665554 22333333322 34467788999999999999999999999999854 44478899999999
Q ss_pred HHHhhccCCChhHHHHHHHHHHHHhccCCCCCccchHH
Q 001144 1091 VILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILL 1128 (1141)
Q Consensus 1091 all~~l~d~~~~vvleam~~L~~lL~~l~~~~~~~~l~ 1128 (1141)
.++....|..-.+....-.-|-+++.+-+-+.+.+++=
T Consensus 873 sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 873 SLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCH
Confidence 99999888777787777777777777777776666653
No 33
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=87.70 E-value=0.16 Score=37.63 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=19.9
Q ss_pred HHHHhhhcCCCCchhhhhhccccCCccc
Q 001144 1051 VEALCRHVSDESPTVRGLCLRGLVQIPS 1078 (1141)
Q Consensus 1051 l~~L~~~l~D~~~~VR~lslrGLgnl~~ 1078 (1141)
+..+.+.++||++.||..+.++||+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4566677788888888888888877653
No 34
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.30 E-value=53 Score=40.34 Aligned_cols=128 Identities=18% Similarity=0.189 Sum_probs=91.9
Q ss_pred hhHHHHHHHHHhhhcCCcccchhHHHHHHHH--h---hhccC-CccchHHHHHHHHhhhcCCCCchhhhhhccccCCc--
Q 001144 1005 KEVQTICLILTKSINRQQRFQREAAAAALSE--F---VRYSG-GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQI-- 1076 (1141)
Q Consensus 1005 ~~~~~i~~~L~~~L~s~~~~qRi~a~af~sE--L---L~~~~-~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl-- 1076 (1141)
+...+|+.-+.|.+.+..+. .+.-.++.+- + ..+.. +...=...++++|.+.+.|++..-|..++.=+..+
T Consensus 287 ~~~s~il~~iLpc~s~~e~~-~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~ 365 (675)
T KOG0212|consen 287 LYLSGILTAILPCLSDTEEM-SIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYH 365 (675)
T ss_pred hhhhhhhhhcccCCCCCccc-cHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHh
Confidence 35678888889998887776 3333333332 2 22222 22211236999999999999999998886555433
Q ss_pred -cchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCCCCccchHHHHHHH
Q 001144 1077 -PSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVR 1133 (1141)
Q Consensus 1077 -~~~kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~l~~~~~~~~l~~ia~r 1133 (1141)
+.+++-.+...+...+++.+.|.+++|++.++..|+.|-..-...+...|+.++-..
T Consensus 366 ~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~ 423 (675)
T KOG0212|consen 366 KAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEM 423 (675)
T ss_pred hCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHH
Confidence 334666677888899999999999999999999999998877776777777766543
No 35
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=85.87 E-value=96 Score=38.08 Aligned_cols=392 Identities=15% Similarity=0.153 Sum_probs=204.2
Q ss_pred CCChhhHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhcccCCccchhhHHHHHHHHhhcCHHHHHHHHHHHHhhhccccc
Q 001144 292 TPDDDHSALLHRCLGILLQKVADRNYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASHLDAVLEMLKGILDNIGQSLF 371 (1141)
Q Consensus 292 ~~~~~eK~fL~k~lG~~L~~~~~~~~V~~~L~~ll~~~~~~~~~ereG~A~~~G~~A~~Hld~vL~~Le~~~k~~~~~~~ 371 (1141)
.++..+|+..|-++...... +.+.+.--+..+.+..++.++..| |.| +...+.-........+-.....
T Consensus 53 s~~~~~Krl~yl~l~~~~~~--~~~~~~l~~n~l~kdl~~~n~~~~-~lA--L~~l~~i~~~~~~~~l~~~v~~------ 121 (526)
T PF01602_consen 53 SKDLELKRLGYLYLSLYLHE--DPELLILIINSLQKDLNSPNPYIR-GLA--LRTLSNIRTPEMAEPLIPDVIK------ 121 (526)
T ss_dssp SSSHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHHHCSSSHHHH-HHH--HHHHHHH-SHHHHHHHHHHHHH------
T ss_pred CCCHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHhhcCCCHHHH-HHH--HhhhhhhcccchhhHHHHHHHH------
Confidence 56788899888776665554 343333344455554555555433 333 3323322233333333222221
Q ss_pred hhhhccccCcccccchHhHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhh
Q 001144 372 QRLLSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVIN 451 (1141)
Q Consensus 372 ~~~~~~~k~~~~~~e~~~~ks~l~l~YG~va~~ap~~~l~~rve~~I~~~i~~~~~~~kd~~lK~s~l~si~~i~~al~~ 451 (1141)
...++. .-+|...+++..++....|...- . .+. +.+..++..+|+.++.+.+.++..+ + ++
T Consensus 122 -----ll~~~~-----~~VRk~A~~~l~~i~~~~p~~~~-~----~~~-~~l~~lL~d~~~~V~~~a~~~l~~i-~--~~ 182 (526)
T PF01602_consen 122 -----LLSDPS-----PYVRKKAALALLKIYRKDPDLVE-D----ELI-PKLKQLLSDKDPSVVSAALSLLSEI-K--CN 182 (526)
T ss_dssp -----HHHSSS-----HHHHHHHHHHHHHHHHHCHCCHH-G----GHH-HHHHHHTTHSSHHHHHHHHHHHHHH-H--CT
T ss_pred -----HhcCCc-----hHHHHHHHHHHHHHhccCHHHHH-H----HHH-HHHhhhccCCcchhHHHHHHHHHHH-c--cC
Confidence 111222 25888888899999888666431 1 112 2344455667888888888888887 1 11
Q ss_pred hhhcCCCcCCCCHHHHHHHHHHHhccCCCCCcCCchHHHHHHHHHHHHHhhhhcccCCCCChhHHHHHHHHhhhccccCC
Q 001144 452 AAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATLGFFALPN 531 (1141)
Q Consensus 452 ~~~~~~~f~f~~k~eLl~~l~~~i~~Ep~~~L~s~~~~ll~~r~~a~~ait~L~~L~P~l~~e~~~~ll~~clsv~~lP~ 531 (1141)
. + .|. .--..+...+..++ ..| +| . .+..++..+..+.+..|.... +..+++.+...+.
T Consensus 183 ~-~---~~~-~~~~~~~~~L~~~l-~~~-----~~----~-~q~~il~~l~~~~~~~~~~~~--~~~~i~~l~~~l~--- 241 (526)
T PF01602_consen 183 D-D---SYK-SLIPKLIRILCQLL-SDP-----DP----W-LQIKILRLLRRYAPMEPEDAD--KNRIIEPLLNLLQ--- 241 (526)
T ss_dssp H-H---HHT-THHHHHHHHHHHHH-TCC-----SH----H-HHHHHHHHHTTSTSSSHHHHH--HHHHHHHHHHHHH---
T ss_pred c-c---hhh-hhHHHHHHHhhhcc-ccc-----ch----H-HHHHHHHHHHhcccCChhhhh--HHHHHHHHHHHhh---
Confidence 1 1 111 22345555555554 122 34 1 456666666665544332221 1455555443222
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHhhhhhhcCChhHHHhhHHHHHHHHHHHHHHhccccccccC
Q 001144 532 DPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALG 611 (1141)
Q Consensus 532 ~~~~~~~~l~~~l~~ll~~ll~~~~~~~~~~~~~Lq~il~~L~pWl~S~k~~EReRA~~~~~~lL~~~~~~~~~~~c~~~ 611 (1141)
.......| +....+..-.. ....++..++.|..-+.|....-|-=|+.....+.+.+...
T Consensus 242 --s~~~~V~~----e~~~~i~~l~~-----~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~--------- 301 (526)
T PF01602_consen 242 --SSSPSVVY----EAIRLIIKLSP-----SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPA--------- 301 (526)
T ss_dssp --HHHHHHHH----HHHHHHHHHSS-----SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHH---------
T ss_pred --ccccHHHH----HHHHHHHHhhc-----chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchh---------
Confidence 00011123 33333333332 25567888888888888888778877777655554422111
Q ss_pred CCCCcccccchhhccccCCCCCCCccCCCchhhhhhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCC
Q 001144 612 CHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSS 691 (1141)
Q Consensus 612 ~~~~~~~~~~l~~~~~~~f~~~p~~~~~p~~~~~~lG~lvg~l~p~C~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~ 691 (1141)
.....+-.+.++ .|++..||..|++.++.+..=
T Consensus 302 ----------------------------------v~~~~~~~~~l~-~~~d~~Ir~~~l~lL~~l~~~------------ 334 (526)
T PF01602_consen 302 ----------------------------------VFNQSLILFFLL-YDDDPSIRKKALDLLYKLANE------------ 334 (526)
T ss_dssp ----------------------------------HGTHHHHHHHHH-CSSSHHHHHHHHHHHHHH--H------------
T ss_pred ----------------------------------hhhhhhhhheec-CCCChhHHHHHHHHHhhcccc------------
Confidence 112222233222 488899999999988877410
Q ss_pred CCChhhhhhhhcchhHHHHHhhcCCCCCChh----HHHHHHHHHHhhCChHHHHHHHHHHHHhccCCCchhHHHHHHHHH
Q 001144 692 GIDLELSYGALSSLEDVIAILRSDASIDPSE----VFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVV 767 (1141)
Q Consensus 692 ~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~----~~~~i~~~~~k~L~~~el~~li~tll~~L~d~~~~~~~~A~~~L~ 767 (1141)
.....- ++++..-.++ .++.. ....++....++ +.....++.++++-+...+......+...+.
T Consensus 335 ----~n~~~I---l~eL~~~l~~---~~d~~~~~~~i~~I~~la~~~--~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~ 402 (526)
T PF01602_consen 335 ----SNVKEI---LDELLKYLSE---LSDPDFRRELIKAIGDLAEKF--PPDAEWYVDTLLKLLEISGDYVSNEIINVIR 402 (526)
T ss_dssp ----HHHHHH---HHHHHHHHHH---C--HHHHHHHHHHHHHHHHHH--GSSHHHHHHHHHHHHHCTGGGCHCHHHHHHH
T ss_pred ----cchhhH---HHHHHHHHHh---ccchhhhhhHHHHHHHHHhcc--CchHHHHHHHHHHhhhhccccccchHHHHHH
Confidence 111111 1222221111 11221 223333333344 2223344445555555454555655666666
Q ss_pred HHHHhhccccchhhHhHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhcccc
Q 001144 768 EFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNS 818 (1141)
Q Consensus 768 ~~l~~~g~~l~e~dV~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~h~~ 818 (1141)
.++.. .++. -..+++.++..+..+.++.++..++..+--.+.+..+
T Consensus 403 ~ll~~-~~~~----~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~ 448 (526)
T PF01602_consen 403 DLLSN-NPEL----REKILKKLIELLEDISSPEALAAAIWILGEYGELIEN 448 (526)
T ss_dssp HHHHH-STTT----HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT
T ss_pred HHhhc-Chhh----hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc
Confidence 66644 3444 3457888899999999999998888888888877765
No 36
>PRK09687 putative lyase; Provisional
Probab=84.78 E-value=2.1 Score=48.62 Aligned_cols=136 Identities=16% Similarity=0.065 Sum_probs=89.1
Q ss_pred HhhCChhHHHHHHhcCCCCchhhhHhhHHHHHHHHhhcCChh--HHHHHHHHHhh-hcCCcccchhHHHHHHHHhhhccC
Q 001144 965 ECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSIKRPKE--VQTICLILTKS-INRQQRFQREAAAAALSEFVRYSG 1041 (1141)
Q Consensus 965 ~~~g~~~~~~~le~~g~W~~~~~~~~GV~lLAram~~~~~~~--~~~i~~~L~~~-L~s~~~~qRi~a~af~sELL~~~~ 1041 (1141)
..-|..+++..+..--.=+++.-=..| ++++.+-..+. ....+..|... ++.+...=|-.|+..+.++ +.+.
T Consensus 48 ~~~~~~~~~~~l~~ll~~~d~~vR~~A----~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~-~~~~ 122 (280)
T PRK09687 48 QLRGGQDVFRLAIELCSSKNPIERDIG----ADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAINATGHR-CKKN 122 (280)
T ss_pred HhcCcchHHHHHHHHHhCCCHHHHHHH----HHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcc-cccc
Confidence 445677777766652110022222222 24444443322 46778888777 4555555576677667665 3322
Q ss_pred CccchHHHHHHHHhhhcCCCCchhhhhhccccCCccchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHH
Q 001144 1042 GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTI 1114 (1141)
Q Consensus 1042 ~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~l 1114 (1141)
. ......+..|...+.|+++.||..++++||++.. +..+++++..+.|+|..|...|+.+|+.+
T Consensus 123 -~-~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 123 -P-LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-------EAAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred -c-ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-------HHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 1 1234578888899999999999999999987752 34578888888899999999999999988
No 37
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=84.64 E-value=1.1e+02 Score=37.81 Aligned_cols=309 Identities=13% Similarity=0.104 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhcccCCccchhhHHHHHHHHhhcCHHHHHHHHHHHHhhhccccchhhhccc
Q 001144 299 ALLHRCLGILLQKVADRNYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRLLSFF 378 (1141)
Q Consensus 299 ~fL~k~lG~~L~~~~~~~~V~~~L~~ll~~~~~~~~~ereG~A~~~G~~A~~Hld~vL~~Le~~~k~~~~~~~~~~~~~~ 378 (1141)
...-.+++.++....-.....++...+...-.|.++.-|+-+..++|-++..+ +.+...+ ... ..+..+..-.
T Consensus 56 ~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~---~~~---~l~~~i~~~L 128 (503)
T PF10508_consen 56 ELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHS-EGAAQLL---VDN---ELLPLIIQCL 128 (503)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HHHHHHh---cCc---cHHHHHHHHH
Confidence 34446688888877666667777777777777888889999999999999665 3333322 111 1222222223
Q ss_pred cCcccccchHhHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhhhhcCCC
Q 001144 379 SNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGAS 458 (1141)
Q Consensus 379 k~~~~~~e~~~~ks~l~l~YG~va~~ap~~~l~~rve~~I~~~i~~~~~~~kd~~lK~s~l~si~~i~~al~~~~~~~~~ 458 (1141)
.+.. ..+....+-....++.+- ..+-.-++.+.+..+.+ +....+..+|...+..+..|++. ++ +.
T Consensus 129 ~~~d-----~~Va~~A~~~L~~l~~~~--~~~~~l~~~~~~~~L~~-l~~~~~~~vR~Rv~el~v~i~~~-S~--~~--- 194 (503)
T PF10508_consen 129 RDPD-----LSVAKAAIKALKKLASHP--EGLEQLFDSNLLSKLKS-LMSQSSDIVRCRVYELLVEIASH-SP--EA--- 194 (503)
T ss_pred cCCc-----HHHHHHHHHHHHHHhCCc--hhHHHHhCcchHHHHHH-HHhccCHHHHHHHHHHHHHHHhc-CH--HH---
Confidence 2222 124444555555665542 22222223333332222 22334777888777777777653 22 11
Q ss_pred cCCCCHHHHHHHHHHHhccCCCCCcCCchHHHHHHHHHHHHHhhhhcccCCCCChhHHHHHHHHhhhccccCCCCCC-ch
Q 001144 459 FPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATLGFFALPNDPID-VV 537 (1141)
Q Consensus 459 f~f~~k~eLl~~l~~~i~~Ep~~~L~s~~~~ll~~r~~a~~ait~L~~L~P~l~~e~~~~ll~~clsv~~lP~~~~~-~~ 537 (1141)
+..-....+++.++..++. .|.| +|--|+..++.|..-+.-+..-.+..+++.....+.=. .+++ ..
T Consensus 195 ~~~~~~sgll~~ll~eL~~--dDiL---------vqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~-~~dp~~~ 262 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDS--DDIL---------VQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDS-EEDPRLS 262 (503)
T ss_pred HHHHHhccHHHHHHHHhcC--ccHH---------HHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhcc-ccCCccc
Confidence 1121122477777777765 3554 77889999999987333333334444444433222111 1222 22
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHhhhhhhcCChhHHHhhHHHHHHHHHHHHHHhccccccccCCCCCcc
Q 001144 538 NPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCT 617 (1141)
Q Consensus 538 ~~l~~~l~~ll~~ll~~~~~~~~~~~~~Lq~il~~L~pWl~S~k~~EReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~ 617 (1141)
..++...+.+++.+...++. .-....-.+++.+..++.|...-+|.-|+.+...+= +.+.|...
T Consensus 263 ~~~l~g~~~f~g~la~~~~~---~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~ig-----st~~G~~~-------- 326 (503)
T PF10508_consen 263 SLLLPGRMKFFGNLARVSPQ---EVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIG-----STVEGKQL-------- 326 (503)
T ss_pred chhhhhHHHHHHHHHhcChH---HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHh-----CCHHHHHH--------
Confidence 34456777888877765322 123344557788889999999999999998865332 22222111
Q ss_pred cccchhhccccCCCCCCCccCCCchhhhhhhhHHHHhhcCccCCChhHHHHHHHHHHHHH
Q 001144 618 HIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLF 677 (1141)
Q Consensus 618 ~~~~l~~~~~~~f~~~p~~~~~p~~~~~~lG~lvg~l~p~C~D~~~~ir~~A~~~i~~Ll 677 (1141)
+..+ + -+.+-+.+..++-.+.....++|..+++|+..+|
T Consensus 327 ----L~~~----~-------------~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il 365 (503)
T PF10508_consen 327 ----LLQK----Q-------------GPAMKHVLKAIGDAIKSGSTELKLRALHALASIL 365 (503)
T ss_pred ----HHhh----c-------------chHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 1011 0 1156777888888999999999999999999988
No 38
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=83.83 E-value=26 Score=38.03 Aligned_cols=118 Identities=14% Similarity=0.182 Sum_probs=75.1
Q ss_pred hhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCChhhhhhhhcchhHHHHHhhcCCCCCChhHHH
Q 001144 646 CLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFN 725 (1141)
Q Consensus 646 ~lG~lvg~l~p~C~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~ 725 (1141)
....++..+.-+|+|+...||..|.+|+..+. .+.+.. ..+
T Consensus 91 ~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~-------~~~~~~------------------------------~~~-- 131 (228)
T PF12348_consen 91 YADILLPPLLKKLGDSKKFIREAANNALDAII-------ESCSYS------------------------------PKI-- 131 (228)
T ss_dssp HHHHHHHHHHHGGG---HHHHHHHHHHHHHHH-------TTS-H--------------------------------HH--
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHHH-------HHCCcH------------------------------HHH--
Confidence 57778888888999999999999999998875 111100 000
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhc---cccchhh-HhHHHHHHHHHhhhcCcHHH
Q 001144 726 RIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRG---NELSETD-VSRTTQSLLSAAVHITDKHL 801 (1141)
Q Consensus 726 ~i~~~~~k~L~~~el~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g---~~l~e~d-V~eIv~~i~~~L~~i~~~~~ 801 (1141)
++..+..+..+.+...-..++..+..+++..| ..+.... ++.++..|. ++-...++.+
T Consensus 132 -----------------~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~-~~l~D~~~~V 193 (228)
T PF12348_consen 132 -----------------LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALV-KLLSDADPEV 193 (228)
T ss_dssp -----------------HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHH-HHHTSS-HHH
T ss_pred -----------------HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHH-HHCCCCCHHH
Confidence 01123356677777777888889999998888 5552221 355555554 4445567899
Q ss_pred HHHHHHHHHHhhhcccchh
Q 001144 802 RLETLGAISCLAENTNSKI 820 (1141)
Q Consensus 802 r~~~l~ai~lLa~~h~~~V 820 (1141)
|..+.+++..+.++.|+..
T Consensus 194 R~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 194 REAARECLWALYSHFPERA 212 (228)
T ss_dssp HHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHCCHhh
Confidence 9999999999999999765
No 39
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.61 E-value=1.5e+02 Score=37.80 Aligned_cols=204 Identities=10% Similarity=0.076 Sum_probs=114.4
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHhhhhhhcCChhHHHhhHHHHHHHHHHHHHHhccccccccCCCCCcccccchhhccc
Q 001144 548 LCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVL 627 (1141)
Q Consensus 548 l~~ll~~~~~~~~~~~~~Lq~il~~L~pWl~S~k~~EReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~ 627 (1141)
|+.+....+.| ..+++.|.+.+.||++..+...---|+.++.+++.++-+. ..+
T Consensus 223 L~~l~~y~p~d----~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~-~~~--------------------- 276 (734)
T KOG1061|consen 223 LDCLAEYVPKD----SREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQV-NEL--------------------- 276 (734)
T ss_pred HHHHHhcCCCC----chhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHH-HHH---------------------
Confidence 33444444442 4689999999999999999999999999999888855531 000
Q ss_pred cCCCCCCCccCCCchhhhhhhhHHHHhhcCccCCChhHHHHHHHHHHHHHH----HHhhCCCCCCCCCCCChhhhhhhhc
Q 001144 628 GNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFS----ISLSLPRPVGSSSGIDLELSYGALS 703 (1141)
Q Consensus 628 ~~f~~~p~~~~~p~~~~~~lG~lvg~l~p~C~D~~~~ir~~A~~~i~~Ll~----I~l~~~~~~~~~~~~~~~~~~~~l~ 703 (1141)
.+=++.+-+.-.| |..++++..|..=|..+++ |... .+.-+.-.++ +-.+-.+.
T Consensus 277 ------------------~~~K~~~pl~tll-s~~~e~qyvaLrNi~lil~~~p~~~~~--~~~~Ff~kyn-DPiYvK~e 334 (734)
T KOG1061|consen 277 ------------------LFKKVAPPLVTLL-SSESEIQYVALRNINLILQKRPEILKV--EIKVFFCKYN-DPIYVKLE 334 (734)
T ss_pred ------------------HHHHhcccceeee-cccchhhHHHHhhHHHHHHhChHHHHh--HhHeeeeecC-CchhhHHH
Confidence 0111111112222 3334777777776666551 1100 0011111111 11111122
Q ss_pred ch------------hHHHHHhhcCCCCCChhHHHHHHHHHH---hhCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHH
Q 001144 704 SL------------EDVIAILRSDASIDPSEVFNRIVSSVC---ILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVE 768 (1141)
Q Consensus 704 ~l------------~~l~~~~~~~~~~~~~~~~~~i~~~~~---k~L~~~el~~li~tll~~L~d~~~~~~~~A~~~L~~ 768 (1141)
++ .++++-.++-...-|.+...+.+++++ -+.... -+.|-.+++.+.-.....++.+.+++..
T Consensus 335 Kleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~--~~cv~~lLell~~~~~yvvqE~~vvi~d 412 (734)
T KOG1061|consen 335 KLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS--NDCVSILLELLETKVDYVVQEAIVVIRD 412 (734)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh--hhhHHHHHHHHhhcccceeeehhHHHHh
Confidence 21 111111122222223333344555542 333333 6677788888887777788888888888
Q ss_pred HHHhhccccchhhHhHHHHHHHHHhhhcCcHHHHHHHH
Q 001144 769 FVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETL 806 (1141)
Q Consensus 769 ~l~~~g~~l~e~dV~eIv~~i~~~L~~i~~~~~r~~~l 806 (1141)
++...-... ..++..++..+.++++|.+|..+.
T Consensus 413 ilRkyP~~~-----~~vv~~l~~~~~sl~epeak~ami 445 (734)
T KOG1061|consen 413 ILRKYPNKY-----ESVVAILCENLDSLQEPEAKAALI 445 (734)
T ss_pred hhhcCCCch-----hhhhhhhcccccccCChHHHHHHH
Confidence 887654433 346777888888899998888877
No 40
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=82.42 E-value=9.3 Score=48.74 Aligned_cols=125 Identities=17% Similarity=0.213 Sum_probs=95.7
Q ss_pred chhhhHhhHHHHHHHHhhcCChhHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCc
Q 001144 984 DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESP 1063 (1141)
Q Consensus 984 ~~~~~~~GV~lLAram~~~~~~~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~ 1063 (1141)
+...-.+|+--+-+.|..-.. ++.+|..++++..+.+-..+- .++--+.+.+......---.+|.+.+-++||||
T Consensus 32 n~~~kidAmK~iIa~M~~G~d--mssLf~dViK~~~trd~ElKr---L~ylYl~~yak~~P~~~lLavNti~kDl~d~N~ 106 (757)
T COG5096 32 NDYKKIDAMKKIIAQMSLGED--MSSLFPDVIKNVATRDVELKR---LLYLYLERYAKLKPELALLAVNTIQKDLQDPNE 106 (757)
T ss_pred ChHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhcCHHHHH---HHHHHHHHHhccCHHHHHHHHHHHHhhccCCCH
Confidence 566778888888888876544 999999999998744433332 244455566652222222278889999999999
Q ss_pred hhhhhhccccCCccchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhc
Q 001144 1064 TVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILK 1116 (1141)
Q Consensus 1064 ~VR~lslrGLgnl~~~kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~ 1116 (1141)
.+|.+++|-||.+-.. +...++++++...+.|++..|.-.|..++.++.+
T Consensus 107 ~iR~~AlR~ls~l~~~---el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ 156 (757)
T COG5096 107 EIRGFALRTLSLLRVK---ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR 156 (757)
T ss_pred HHHHHHHHHHHhcChH---HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh
Confidence 9999999999988744 5678889999999999999999999999999874
No 41
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=82.34 E-value=1.4 Score=42.65 Aligned_cols=85 Identities=16% Similarity=0.303 Sum_probs=67.1
Q ss_pred HHHHHhhhcCC----CCchhhhhhccccCCccch---hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCCCC
Q 001144 1050 MVEALCRHVSD----ESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDA 1122 (1141)
Q Consensus 1050 ~l~~L~~~l~D----~~~~VR~lslrGLgnl~~~---kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~l~~~~ 1122 (1141)
++..+.+-+.| .+..-|.-++||++.+... .+....|++..++-++++.+ +....|+.+...++..+++.+
T Consensus 12 il~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~ 89 (107)
T PF08064_consen 12 ILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEED 89 (107)
T ss_pred HHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHH
Confidence 33444444444 4466778889999987552 77889999999999998854 788899999999999999999
Q ss_pred ccchHHHHHHHhcc
Q 001144 1123 VEPILLNLSVRLRN 1136 (1141)
Q Consensus 1123 ~~~~l~~ia~rlR~ 1136 (1141)
++|++-++..-+-|
T Consensus 90 l~~ll~~~~~~l~~ 103 (107)
T PF08064_consen 90 LGPLLDQIFAILLP 103 (107)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888776654
No 42
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=82.05 E-value=0.61 Score=38.96 Aligned_cols=51 Identities=25% Similarity=0.290 Sum_probs=38.5
Q ss_pred hhHHHHHHHHhhhccC-CccchHHHHHHHHhhhcCCCCchhhhhhccccCCc
Q 001144 1026 REAAAAALSEFVRYSG-GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQI 1076 (1141)
Q Consensus 1026 Ri~a~af~sELL~~~~-~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl 1076 (1141)
|-.|+-.+.++..... .......+++..|...+.|+++.||.-+..+||||
T Consensus 4 R~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 4 RRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4556666666554433 33345566999999999999999999999999985
No 43
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=81.95 E-value=1.4e+02 Score=37.06 Aligned_cols=386 Identities=16% Similarity=0.148 Sum_probs=196.2
Q ss_pred hhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCChhhhhhhhcchhHHHHHhhcCCCCCChhHHHH
Q 001144 647 LGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFNR 726 (1141)
Q Consensus 647 lG~lvg~l~p~C~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~ 726 (1141)
.-..+..+.=-=.-|.+.+|....-|+-.+..... .+.+ .... .++.+........+....-+.
T Consensus 94 ~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~---~~~~-------~~~l------~~l~~ll~~~~~~~~~~aa~~ 157 (569)
T KOG1242|consen 94 PISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSK---GLSG-------EYVL------ELLLELLTSTKIAERAGAAYG 157 (569)
T ss_pred hhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhh---ccCH-------HHHH------HHHHHHhccccHHHHhhhhHH
Confidence 33444444444556888999999998877652111 1111 1111 111111111111111111133
Q ss_pred HHHHHHhh-CChHHHHHHHHHHHHhccCCCchhH-HHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhc--CcHHHH
Q 001144 727 IVSSVCIL-LTKDELVATLHSCTTAICDRTKQSA-EGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHI--TDKHLR 802 (1141)
Q Consensus 727 i~~~~~k~-L~~~el~~li~tll~~L~d~~~~~~-~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i--~~~~~r 802 (1141)
++..+..+ ....+=..|+-++.+++.|.+..-. ++++.........-|.-. | |.|+..+..-+... ..+.+|
T Consensus 158 ~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~-E---Pyiv~~lp~il~~~~d~~~~Vr 233 (569)
T KOG1242|consen 158 LAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPF-E---PYIVPILPSILTNFGDKINKVR 233 (569)
T ss_pred HHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCC-C---chHHhhHHHHHHHhhccchhhh
Confidence 44444222 2233345677788888888765443 478888888888888666 3 33444444444433 246789
Q ss_pred HHHHHHHHHhhhcccchhhHHHHhhhhcccccccccccccCCCChhhHHHHhhcCcchHHHHHHHHHHHHccCCCccCCC
Q 001144 803 LETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDM 882 (1141)
Q Consensus 803 ~~~l~ai~lLa~~h~~~Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~aLa~~~~l~~~vL~~LL~~L~~~p~~~e~~ 882 (1141)
+.+..++..+.+..+..-|- .+|-++.. +. - +.-||+
T Consensus 234 ~Aa~~a~kai~~~~~~~aVK-~llpsll~----------~l--~-~~kWrt----------------------------- 270 (569)
T KOG1242|consen 234 EAAVEAAKAIMRCLSAYAVK-LLLPSLLG----------SL--L-EAKWRT----------------------------- 270 (569)
T ss_pred HHHHHHHHHHHHhcCcchhh-HhhhhhHH----------HH--H-HHhhhh-----------------------------
Confidence 99999999998888866664 55511000 00 0 013443
Q ss_pred CCCCCCCCCCCcccchhhHHHHHHHHHHHHhcCCcchHHHHHHhhhHHHHHHHHHHhhhccCCCCCCCCh--hHHHHHHH
Q 001144 883 EKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEP--LRAILTSF 960 (1141)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~plaAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P--~~~aleAl 960 (1141)
..|+...++-|.... ...+..++|.+.=-+--.+ . ...| -..+.+++
T Consensus 271 ------------------K~aslellg~m~~~a----p~qLs~~lp~iiP~lsevl------~---DT~~evr~a~~~~l 319 (569)
T KOG1242|consen 271 ------------------KMASLELLGAMADCA----PKQLSLCLPDLIPVLSEVL------W---DTKPEVRKAGIETL 319 (569)
T ss_pred ------------------HHHHHHHHHHHHHhc----hHHHHHHHhHhhHHHHHHH------c---cCCHHHHHHHHHHH
Confidence 223333333332222 1222333333332221111 0 1122 34556666
Q ss_pred HHHHHhhCChhHHHHHHhcCC-CCchh-hhHhhHHH-HHHHHhhcC-ChhHHHHHHHHHhhh-cCCcccchhHHH--HHH
Q 001144 961 QAFCECVGDLEMRKILARDGE-QNDKE-KWINLIGD-VAGCVSIKR-PKEVQTICLILTKSI-NRQQRFQREAAA--AAL 1033 (1141)
Q Consensus 961 k~lL~~~g~~~~~~~le~~g~-W~~~~-~~~~GV~l-LAram~~~~-~~~~~~i~~~L~~~L-~s~~~~qRi~a~--af~ 1033 (1141)
..+-.-....++-.++-.... ...+. +-.+-+.. .+-+.+++- .+-+--|+-.+...+ .+.....|.++. .+.
T Consensus 320 ~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm 399 (569)
T KOG1242|consen 320 LKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNM 399 (569)
T ss_pred HHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHH
Confidence 666555555555544444211 11111 22222222 223333331 223333333333333 222233444443 456
Q ss_pred HHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccchhhhhhHHHHHHHHHhhccC-CChhHHHHHHHHHH
Q 001144 1034 SEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDD-LDESVQLTAVSCLL 1112 (1141)
Q Consensus 1034 sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~kv~~~~~~lL~all~~l~d-~~~~vvleam~~L~ 1112 (1141)
+-|...|......+..++..|...+.|+-|.||..+-|.||.+..+-.+.+.+.+++-+..++.+ +.+....++-.+|+
T Consensus 400 ~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~ 479 (569)
T KOG1242|consen 400 CKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLS 479 (569)
T ss_pred HHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHH
Confidence 66665665455666779999999999999999999999999886652222335555555555533 33355667778888
Q ss_pred HHhccCCCCCccch
Q 001144 1113 TILKSSSKDAVEPI 1126 (1141)
Q Consensus 1113 ~lL~~l~~~~~~~~ 1126 (1141)
.++..+....+.-+
T Consensus 480 evl~~~~v~~~~~~ 493 (569)
T KOG1242|consen 480 EVLAGLGVEKVEDI 493 (569)
T ss_pred HHHhcccchHHHHH
Confidence 88887776654433
No 44
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=81.82 E-value=1.4 Score=40.12 Aligned_cols=56 Identities=29% Similarity=0.399 Sum_probs=45.6
Q ss_pred HHHhhhc-CCCCchhhhhhccccCCccchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHH
Q 001144 1052 EALCRHV-SDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTI 1114 (1141)
Q Consensus 1052 ~~L~~~l-~D~~~~VR~lslrGLgnl~~~kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~l 1114 (1141)
..|.+.+ +|+++.||.-+++.||++.. +.+++.+...+.|+|..|...|..+|+++
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGD-------PEAIPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTH-------HHHHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCC-------HhHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3566667 89999999999999996642 35577788888888999999999999865
No 45
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=81.40 E-value=1.8 Score=41.91 Aligned_cols=85 Identities=15% Similarity=0.282 Sum_probs=65.8
Q ss_pred HHHHHhhhcCCCC--ch--hhhhhccccCCccc---hhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCCCC
Q 001144 1050 MVEALCRHVSDES--PT--VRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDA 1122 (1141)
Q Consensus 1050 ~l~~L~~~l~D~~--~~--VR~lslrGLgnl~~---~kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~l~~~~ 1122 (1141)
+++.+.+-+.|++ .. -|+-++|++|-+.. ..+..+.|++..++.++++ .++....|+.+...++..+++.+
T Consensus 12 il~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~ 89 (107)
T smart00802 12 ILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEE 89 (107)
T ss_pred HHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHH
Confidence 4455555555555 22 37788899987644 3788899999999999998 55699999999999999999999
Q ss_pred ccchHHHHHHHhcc
Q 001144 1123 VEPILLNLSVRLRN 1136 (1141)
Q Consensus 1123 ~~~~l~~ia~rlR~ 1136 (1141)
++|.+-.+..-+-|
T Consensus 90 l~~ll~~~~~~i~~ 103 (107)
T smart00802 90 LGPLLDQIFAAILP 103 (107)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998877655443
No 46
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=80.86 E-value=3 Score=30.76 Aligned_cols=31 Identities=32% Similarity=0.552 Sum_probs=25.4
Q ss_pred HHHHHHHhhhhccHHHHHHHHHHHHHHhhcc
Q 001144 40 LLEAVKSLLDEQNLAVQKAISELIVVMASHC 70 (1141)
Q Consensus 40 i~~~vk~~l~d~~~kVr~al~~~I~ama~~~ 70 (1141)
|+..+..++.|++.+||.+.++.+..++++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 3556677889999999999999999998863
No 47
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=79.93 E-value=3.1e+02 Score=39.65 Aligned_cols=111 Identities=14% Similarity=0.180 Sum_probs=82.5
Q ss_pred HHHHHHHhhhcCCcccchhHHHHHHHHhhhccC--CccchHHHHHHHHhhhcCCCCchhhhhhccccCCccch----h-h
Q 001144 1009 TICLILTKSINRQQRFQREAAAAALSEFVRYSG--GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI----H-I 1081 (1141)
Q Consensus 1009 ~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~--~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~----k-v 1081 (1141)
+.+..|...|+++.+..+.-|..++..+-.... .........+.-|..-+++.+..+|+-+-..|+|++.+ + +
T Consensus 609 ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~ 688 (2102)
T PLN03200 609 DALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKV 688 (2102)
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHH
Confidence 467888999999988888888888887776544 12222222555666667778888999999999998754 2 2
Q ss_pred hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCC
Q 001144 1082 HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSS 1119 (1141)
Q Consensus 1082 ~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~l~ 1119 (1141)
+.-...+++++++.+.+.|.+++-.|+.+|.+++..-+
T Consensus 689 ~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e 726 (2102)
T PLN03200 689 SYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE 726 (2102)
T ss_pred HHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch
Confidence 22223478889999999999999999999999998654
No 48
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=79.90 E-value=8.3 Score=41.96 Aligned_cols=107 Identities=24% Similarity=0.376 Sum_probs=50.4
Q ss_pred HHHHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccch------hh
Q 001144 1008 QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI------HI 1081 (1141)
Q Consensus 1008 ~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~------kv 1081 (1141)
..++..|+..+.++...-|-.|...+..++.+.. ...+-+...+..+..+.||.||..+++-+..+... .+
T Consensus 93 ~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~---~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 93 DILLPPLLKKLGDSKKFIREAANNALDAIIESCS---YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC---cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 3333333334444433444445555555555442 00111255566666777777776666655544221 11
Q ss_pred --hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhcc
Q 001144 1082 --HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKS 1117 (1141)
Q Consensus 1082 --~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~ 1117 (1141)
....+.+.+++..++.|.+.+|.-.|-.++..+-..
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 112356667777777776666665555555554443
No 49
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.53 E-value=24 Score=44.22 Aligned_cols=192 Identities=18% Similarity=0.195 Sum_probs=117.9
Q ss_pred cCCCChhh------HHHHhhcCcchHHHHHHHHHHHHccCCCccCCCCCCCCCCCCCCcccchhhHHHHHHHHHHHHhcC
Q 001144 842 RGGWPMQD------AFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGG 915 (1141)
Q Consensus 842 ~~plP~d~------~W~aLa~~~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~plaAt~aL~Ell~~~ 915 (1141)
+++-||-| ++|.+-.-|.-.+.-+..|-++|. +||++ +--||++.+||+-.-+
T Consensus 154 ~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLe-------DpDp~--------------V~SAAV~VICELArKn 212 (877)
T KOG1059|consen 154 NSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLE-------DPDPS--------------VVSAAVSVICELARKN 212 (877)
T ss_pred hcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhcc-------CCCch--------------HHHHHHHHHHHHHhhC
Confidence 88889987 788888888888888888888776 22211 1348999999987765
Q ss_pred CcchHHHHHHhhhHHHHHHHHHHhhhccCCCCCCCChhHHHHHHHHHHHHhhCChhHHHHHHhcCCCCchhhhHhhHHHH
Q 001144 916 GKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILARDGEQNDKEKWINLIGDV 995 (1141)
Q Consensus 916 ~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~lL~~~g~~~~~~~le~~g~W~~~~~~~~GV~lL 995 (1141)
-+.| ...|-.=||-+-..++.|-..+.+..-|.-.
T Consensus 213 Pkny---------------------------------L~LAP~ffkllttSsNNWmLIKiiKLF~aLt------------ 247 (877)
T KOG1059|consen 213 PQNY---------------------------------LQLAPLFYKLLVTSSNNWVLIKLLKLFAALT------------ 247 (877)
T ss_pred Cccc---------------------------------ccccHHHHHHHhccCCCeehHHHHHHHhhcc------------
Confidence 1111 2234455677777888898888888766543
Q ss_pred HHHHhhcCChhHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccC-C--------ccchHHHHHHHHhhhcCCCCchhh
Q 001144 996 AGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSG-G--------FDSLLEQMVEALCRHVSDESPTVR 1066 (1141)
Q Consensus 996 Aram~~~~~~~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~-~--------~~~l~~~~l~~L~~~l~D~~~~VR 1066 (1141)
..-|..-+.++.-+.-.+ ++.+|+..+-|=+|+-. + ......-.+..|..-+.|.++..|
T Consensus 248 -----plEPRLgKKLieplt~li------~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLK 316 (877)
T KOG1059|consen 248 -----PLEPRLGKKLIEPITELM------ESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLK 316 (877)
T ss_pred -----ccCchhhhhhhhHHHHHH------HhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHH
Confidence 111111111111111111 23445555555555432 1 111223355667777888889999
Q ss_pred hhhccccCCccchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHH
Q 001144 1067 GLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCL 1111 (1141)
Q Consensus 1067 ~lslrGLgnl~~~kv~~~~~~lL~all~~l~d~~~~vvleam~~L 1111 (1141)
=+++-.++-++.-+- +.+..-..-++..|+|+|++|.++|+.-|
T Consensus 317 YlgLlam~KI~ktHp-~~Vqa~kdlIlrcL~DkD~SIRlrALdLl 360 (877)
T KOG1059|consen 317 YLGLLAMSKILKTHP-KAVQAHKDLILRCLDDKDESIRLRALDLL 360 (877)
T ss_pred HHHHHHHHHHhhhCH-HHHHHhHHHHHHHhccCCchhHHHHHHHH
Confidence 888888877765321 12233345677778999999998887644
No 50
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=77.39 E-value=5.2 Score=44.83 Aligned_cols=63 Identities=24% Similarity=0.336 Sum_probs=51.8
Q ss_pred HHHHHhhhcCCCCchhhhhhccccCCccch-----hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHH
Q 001144 1050 MVEALCRHVSDESPTVRGLCLRGLVQIPSI-----HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTI 1114 (1141)
Q Consensus 1050 ~l~~L~~~l~D~~~~VR~lslrGLgnl~~~-----kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~l 1114 (1141)
.+..+.+-+.+|++.||.-++..|.|++.. +++.|.++++.-+.+.- -|..+.+.+++.|.++
T Consensus 55 gi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s~~--lns~~Q~agLrlL~nL 122 (254)
T PF04826_consen 55 GISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETVSSP--LNSEVQLAGLRLLTNL 122 (254)
T ss_pred CHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHcc
Confidence 566777788999999999999999999775 67889999999888852 3667888888777776
No 51
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=76.24 E-value=2.8 Score=39.49 Aligned_cols=69 Identities=22% Similarity=0.226 Sum_probs=47.2
Q ss_pred HHHhhhcCCCCchhhhhhccccCCccch-h-hhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCC
Q 001144 1052 EALCRHVSDESPTVRGLCLRGLVQIPSI-H-IHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSK 1120 (1141)
Q Consensus 1052 ~~L~~~l~D~~~~VR~lslrGLgnl~~~-k-v~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~l~~ 1120 (1141)
....+-+.||.+=||.-+|..|.++... . .....+.++..+++.+.|.|+=|=+-|++||..+...-+.
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 3344456777777887777777776554 2 3345577777777888877777777788887777665544
No 52
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=75.49 E-value=1.7e+02 Score=38.30 Aligned_cols=181 Identities=10% Similarity=-0.004 Sum_probs=116.7
Q ss_pred HHHHhhCChHHHHHHHHHHHHhccCCCchhH--HHHHHHHHHHHHhhccccchhhHhHH-HHHHHHHhhhcCcHHHHHHH
Q 001144 729 SSVCILLTKDELVATLHSCTTAICDRTKQSA--EGAIQAVVEFVTKRGNELSETDVSRT-TQSLLSAAVHITDKHLRLET 805 (1141)
Q Consensus 729 ~~~~k~L~~~el~~li~tll~~L~d~~~~~~--~~A~~~L~~~l~~~g~~l~e~dV~eI-v~~i~~~L~~i~~~~~r~~~ 805 (1141)
...++++|..+.++++..++....-.+.... .-+=.++..|++.|-..+... .++. +.++++.+.+-.+|+.---+
T Consensus 112 L~~~~~~p~~~ivsllkalfq~~~vqs~aq~~R~~~~~Il~~~l~~~~~~l~s~-~~D~~~~~f~~~~~GEKDPRnLml~ 190 (1030)
T KOG1967|consen 112 LILMSKLPDNFIVSLLKALFQEVQVQSLAQKERLLQYEILEWFLDYRLEFLKSL-GPDFLFTAFCKVVDGEKDPRNLMLV 190 (1030)
T ss_pred HHHhhcCCchHHHHHHHHHHHhcchHHHHHHHHhhHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHhcCCCCchhhHHH
Confidence 3567889999999999888887754443222 566778999999887766543 4444 44488889999999888888
Q ss_pred HHHHHHhhh-ccc-chhhHHHHhhhhcccccccccccccCCCChh-----h------HHHHhhcCcchHHHHHHHHHHHH
Q 001144 806 LGAISCLAE-NTN-SKIVFNEVLATAGKDIVTKDISRLRGGWPMQ-----D------AFHAFSQHAVLSFLFLEHLISAL 872 (1141)
Q Consensus 806 l~ai~lLa~-~h~-~~Vv~~~LL~~~~~~~~~~d~~~~~~plP~d-----~------~W~aLa~~~~l~~~vL~~LL~~L 872 (1141)
-..+-.+++ .+| ..-.+ .|..+.. |-|++. =.|-|-| | +=-++++.|..++-.+-.|++||
T Consensus 191 F~l~~~i~s~~~~l~~F~e-dlFeV~~---CYFPI~--Fkppk~D~~~I~reDL~~sLr~al~stP~Fa~~~lp~LlEKL 264 (1030)
T KOG1967|consen 191 FSLVKEISSLNFPLGPFTE-DLFEVIA---CYFPIT--FKPPKDDTITIRREDLKASLRSALVSTPSFAPFALPLLLEKL 264 (1030)
T ss_pred HHHHHHHhhccCCCCccHH-HHHHHhh---eeeeee--ccCCCCCcccccHHHHHHHHHHHHhcCccchhhHHHHHHHHh
Confidence 888888887 554 33343 5553322 555554 2233322 1 67789999999999999999999
Q ss_pred ccCCCccCCCCCCCCCCCCCCcccchhhHHHHHHHHHHHHhcCCcchHHHHHHhhhHHHHHHHHHHhh
Q 001144 873 NQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGS 940 (1141)
Q Consensus 873 ~~~p~~~e~~~~~~~~~~~~~~~~~~~~plaAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~ 940 (1141)
+..-|... +.++.-+-+.|.-| + ..+..++++.+..++=--++.
T Consensus 265 ~as~~~~K---------------~DsL~~L~ec~~~y----g-----v~~~~~~~~~lWsaik~ei~~ 308 (1030)
T KOG1967|consen 265 NASDPSAK---------------VDSLDTLNECCLKY----G-----VRRMLPAQKKLWSAIKPEIGQ 308 (1030)
T ss_pred ccccchhh---------------hhHHHHHHHHHHHh----C-----chhhhhhHHHHHHHHHHHHcc
Confidence 95432211 12222222222222 1 256677788887777666655
No 53
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=74.59 E-value=9 Score=36.10 Aligned_cols=87 Identities=14% Similarity=0.142 Sum_probs=68.5
Q ss_pred HHHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccchhhhhhHHHH
Q 001144 1009 TICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQV 1088 (1141)
Q Consensus 1009 ~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~kv~~~~~~l 1088 (1141)
..+...+..++++..+=|.-|..-+..|+.+........+.++..+.+.++|+++=|=--+++||+.++.. +-..+
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~----~p~~v 78 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR----HPDEV 78 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH----ChHHH
Confidence 45667778889999999999999999999998612233466999999999999999999999999999754 33446
Q ss_pred HHHHHhhccCC
Q 001144 1089 LSVILALLDDL 1099 (1141)
Q Consensus 1089 L~all~~l~d~ 1099 (1141)
++.++....|.
T Consensus 79 l~~L~~~y~~~ 89 (92)
T PF10363_consen 79 LPILLDEYADP 89 (92)
T ss_pred HHHHHHHHhCc
Confidence 66666655543
No 54
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=73.98 E-value=14 Score=46.11 Aligned_cols=179 Identities=14% Similarity=0.099 Sum_probs=121.7
Q ss_pred ChhHHHHHHHH-HHHHhhCChhHHHHHHhcCCCC--chhhhHhhHHHHHHHHhhcCChhHHHHHHHHHhhhcCCcccchh
Q 001144 951 EPLRAILTSFQ-AFCECVGDLEMRKILARDGEQN--DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQRE 1027 (1141)
Q Consensus 951 ~P~~~aleAlk-~lL~~~g~~~~~~~le~~g~W~--~~~~~~~GV~lLAram~~~~~~~~~~i~~~L~~~L~s~~~~qRi 1027 (1141)
++++...++.. .=+-+.+.-++...|+.-.--+ ....|..|...-.+...+.-+ .+.++-.|+-.+.-..
T Consensus 234 n~~~~~~~~~~~~gff~n~fvd~~~fLeel~lks~~eK~~Ff~~L~~~l~~~pe~i~--~~kvlp~Ll~~~~~g~----- 306 (690)
T KOG1243|consen 234 NKLRFILECRLLGGFFRNDFVDTLLFLEELRLKSVEEKQKFFSGLIDRLDNFPEEII--ASKVLPILLAALEFGD----- 306 (690)
T ss_pred chhhHHHHHHhccccccchHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhhccc-----
Confidence 46666655544 2223344445556666544444 666888888775554443221 2233333333332222
Q ss_pred HHHHHHHHhhhccC--CccchHHHHHHHHhhhcCCCCchhhhhhccccCCccch-hhhhhHHHHHHHHHhhccCCChhHH
Q 001144 1028 AAAAALSEFVRYSG--GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYATQVLSVILALLDDLDESVQ 1104 (1141)
Q Consensus 1028 ~a~af~sELL~~~~--~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~-kv~~~~~~lL~all~~l~d~~~~vv 1104 (1141)
+|..|++=|+..-. ...+....++-.|.+-++-++..||.+=|+++-+-..+ .-..+-.++++-+..|+-|+|..++
T Consensus 307 a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lr 386 (690)
T KOG1243|consen 307 AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLR 386 (690)
T ss_pred cchhhhhHHHHhhhhccccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHH
Confidence 45556655555422 23233445888999999999999999999999877665 3345778999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCccchHHHHHHHhcc
Q 001144 1105 LTAVSCLLTILKSSSKDAVEPILLNLSVRLRN 1136 (1141)
Q Consensus 1105 leam~~L~~lL~~l~~~~~~~~l~~ia~rlR~ 1136 (1141)
..++..+..+...|++..++.-++..--|+++
T Consensus 387 e~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~ 418 (690)
T KOG1243|consen 387 EQTLKSMAVLAPKLSKRNLNGELLRYLARLQP 418 (690)
T ss_pred HHHHHHHHHHHhhhchhhhcHHHHHHHHhhCc
Confidence 99999999999999999998888888877777
No 55
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=72.89 E-value=2.2e+02 Score=34.29 Aligned_cols=131 Identities=14% Similarity=0.161 Sum_probs=96.8
Q ss_pred hhHhhHHHHHHHHhhcCChhHHHHHHHHHhhhcCCcccchhHHHHHHH------HhhhccC--CccchHHH-----HHHH
Q 001144 987 KWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALS------EFVRYSG--GFDSLLEQ-----MVEA 1053 (1141)
Q Consensus 987 ~~~~GV~lLAram~~~~~~~~~~i~~~L~~~L~s~~~~qRi~a~af~s------ELL~~~~--~~~~l~~~-----~l~~ 1053 (1141)
.-.+...-+++|++-++.+....++..+...+.+ .+..+.+|-+|=. ++++... ..+.+-++ ++-.
T Consensus 249 ~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~-~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~ 327 (415)
T PF12460_consen 249 QALEILIWITKALVMRGHPLATELLDKLLELLSS-PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPK 327 (415)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC-hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHH
Confidence 4455666688999988888999999999999988 3334455554432 2333221 22233333 6667
Q ss_pred HhhhcCCCCchhhhhhccccCCccch----hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccC
Q 001144 1054 LCRHVSDESPTVRGLCLRGLVQIPSI----HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSS 1118 (1141)
Q Consensus 1054 L~~~l~D~~~~VR~lslrGLgnl~~~----kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~l 1118 (1141)
|.++.++.+..+|.-.+.+|+++..+ -+..+.+.++|-++.+++-.|.++...++.+|..++..-
T Consensus 328 L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 328 LLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 88888888877999999999988665 345677889999999998888899999999999999876
No 56
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=71.36 E-value=16 Score=38.09 Aligned_cols=126 Identities=19% Similarity=0.240 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchH---HHHHHHHhhhcCCC-CchhhhhhccccCCccch-
Q 001144 1005 KEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLL---EQMVEALCRHVSDE-SPTVRGLCLRGLVQIPSI- 1079 (1141)
Q Consensus 1005 ~~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~---~~~l~~L~~~l~D~-~~~VR~lslrGLgnl~~~- 1079 (1141)
..++.....+..+|+|+....|.+++.+.--.+..+..+ .+. ..-+..|.+-++.+ .+.++..++..|+.+...
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e-~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWE-ILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 478889999999999999999999999888888775311 121 22344444444444 478888999888876432
Q ss_pred --------h-hhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCCCCccchHHHHHHHh
Q 001144 1080 --------H-IHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRL 1134 (1141)
Q Consensus 1080 --------k-v~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~l~~~~~~~~l~~ia~rl 1134 (1141)
+ .....+.++.+++..+++ +.+..+++.+|+.++.. -....+|+.-+|---+
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~-~ptt~rp~~~ki~~~l 160 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH-HPTTFRPFANKIESAL 160 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH-CCccccchHHHHHHHH
Confidence 1 133456677777777664 57888999999999984 4556677665554333
No 57
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=70.53 E-value=2.9e+02 Score=34.68 Aligned_cols=339 Identities=15% Similarity=0.196 Sum_probs=179.6
Q ss_pred hhhhhhcccccccCCCCcchHhhHHHHHHHHHHHhhhhhccchHHHHHHHHHHhh-hccCCCChhhHHHHHHHHHHHHhh
Q 001144 233 IPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAESLDVVQETDWLISLGNAFTEQ-YVLYTPDDDHSALLHRCLGILLQK 311 (1141)
Q Consensus 233 IP~Ll~~L~~~~~~~~~~~~q~~We~~Ll~fL~~sl~~i~d~~W~~~L~~el~~q-l~~y~~~~~eK~fL~k~lG~~L~~ 311 (1141)
+-+++.|+.+.. +-+..|=....+.++..+..-.+-+++-+-+.+- +..++.++.+-+..++|+|+++-.
T Consensus 523 ~~kil~~~~De~---------ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vs 593 (975)
T COG5181 523 SRKILEYYSDEP---------EPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVS 593 (975)
T ss_pred HHHHHhhccCCc---------chhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeee
Confidence 455566665431 2255555555555544443333333333322222 234566677778888999988764
Q ss_pred --cCChhHHHHHHHHHHHhcccCCccchhhHHHHHHHHhh----cCHHHHHHHHHHHHh-hhccc---------------
Q 001144 312 --VADRNYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAA----SHLDAVLEMLKGILD-NIGQS--------------- 369 (1141)
Q Consensus 312 --~~~~~~V~~~L~~ll~~~~~~~~~ereG~A~~~G~~A~----~Hld~vL~~Le~~~k-~~~~~--------------- 369 (1141)
...+-+.-.-+.++++..++..+.-|+--|..+|..+. -|=...|++|-.+.- +.+..
T Consensus 594 l~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I 673 (975)
T COG5181 594 LEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSI 673 (975)
T ss_pred hhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHH
Confidence 34555555556778888888888889888888876553 233445556554431 11000
Q ss_pred ----cch-------hh----hccccCcccccchHhHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH-----hhc
Q 001144 370 ----LFQ-------RL----LSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRL-----LHV 429 (1141)
Q Consensus 370 ----~~~-------~~----~~~~k~~~~~~e~~~~ks~l~l~YG~va~~ap~~~l~~rve~~I~~~i~~~~-----~~~ 429 (1141)
.++ ++ .-+.+.++ .++-..-+--.|.|+..+|.-.= +| .||--+| +.+
T Consensus 674 ~sv~~~~~mqpPi~~ilP~ltPILrnkh-----~Kv~~nti~lvg~I~~~~peyi~-~r------EWMRIcfeLvd~Lks 741 (975)
T COG5181 674 YSVHRFRSMQPPISGILPSLTPILRNKH-----QKVVANTIALVGTICMNSPEYIG-VR------EWMRICFELVDSLKS 741 (975)
T ss_pred hhhhcccccCCchhhccccccHhhhhhh-----HHHhhhHHHHHHHHHhcCcccCC-HH------HHHHHHHHHHHHHHH
Confidence 000 00 00111111 23333334445666666665221 11 1222222 122
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCHHHHHHHHHHHhccCCCCCcCCchHHHHHHHHHHHHHhhhhcccCC
Q 001144 430 RHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEP 509 (1141)
Q Consensus 430 kd~~lK~s~l~si~~i~~al~~~~~~~~~f~f~~k~eLl~~l~~~i~~Ep~~~L~s~~~~ll~~r~~a~~ait~L~~L~P 509 (1141)
+...++-+-..+..-|++||-| .+++..+|.-++-+ -||+ .+||++.
T Consensus 742 ~nKeiRR~A~~tfG~Is~aiGP-------------qdvL~~LlnnLkvq--------------eRq~--Rvctsva---- 788 (975)
T COG5181 742 WNKEIRRNATETFGCISRAIGP-------------QDVLDILLNNLKVQ--------------ERQQ--RVCTSVA---- 788 (975)
T ss_pred hhHHHHHhhhhhhhhHHhhcCH-------------HHHHHHHHhcchHH--------------HHHh--hhhhhhh----
Confidence 3444555555555555555543 25566665432211 3333 2344431
Q ss_pred CCChhHHHHHHHHhh--hccccCCCC-----CCchHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHhhhhhhcCChh
Q 001144 510 KLTIETRNHVMKATL--GFFALPNDP-----IDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVE 582 (1141)
Q Consensus 510 ~l~~e~~~~ll~~cl--sv~~lP~~~-----~~~~~~l~~~l~~ll~~ll~~~~~~~~~~~~~Lq~il~~L~pWl~S~k~ 582 (1141)
.+-+-+.|- +|++.-..+ ...++-.+.+..-|++-|=+.+ .+-...|.-.|+-=+.....
T Consensus 789 ------I~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s-------~dYvy~itPlleDAltDrD~ 855 (975)
T COG5181 789 ------ISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQAS-------LDYVYSITPLLEDALTDRDP 855 (975)
T ss_pred ------hhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHH-------HHHHHHhhHHHHhhhcccch
Confidence 111222332 332211111 1223455666666666554443 56777777777777878888
Q ss_pred HHHhhHHHHHHHHHHHHHHhccccccccCCCCCcccccchhhccccCCCCCCCccCCCchhhhhhhhHHHHhhcCccCCC
Q 001144 583 YQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTD 662 (1141)
Q Consensus 583 ~EReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~f~~~p~~~~~p~~~~~~lG~lvg~l~p~C~D~~ 662 (1141)
--|+-|++++-++-- + ||-..+ -.-+=||+-++-|-.-||.
T Consensus 856 vhRqta~nvI~Hl~L----n-------------c~gtg~----------------------eda~IHLlNllwpNIle~s 896 (975)
T COG5181 856 VHRQTAMNVIRHLVL----N-------------CPGTGD----------------------EDAAIHLLNLLWPNILEPS 896 (975)
T ss_pred HHHHHHHHHHHHHhc----C-------------CCCccc----------------------HHHHHHHHHHhhhhccCCC
Confidence 889999988765543 2 222222 1246789999999999999
Q ss_pred hhHHHHHHHHHHHHH
Q 001144 663 SEVRKISAQILDQLF 677 (1141)
Q Consensus 663 ~~ir~~A~~~i~~Ll 677 (1141)
|.+.+.-.||+..+-
T Consensus 897 Phvi~~~~Eg~e~~~ 911 (975)
T COG5181 897 PHVIQSFDEGMESFA 911 (975)
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999999998764
No 58
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=70.39 E-value=3.2e+02 Score=35.10 Aligned_cols=116 Identities=13% Similarity=0.148 Sum_probs=71.0
Q ss_pred ccCCccchhh------HHHHHHHHhhcCHHHHHHHHHHHHhhhccccchh-------------------hh-ccccCccc
Q 001144 330 NIAIPTNRLG------LAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQR-------------------LL-SFFSNSYR 383 (1141)
Q Consensus 330 ~~~~~~ereG------~A~~~G~~A~~Hld~vL~~Le~~~k~~~~~~~~~-------------------~~-~~~k~~~~ 383 (1141)
+-+++..+.| +|.-+|..--.||.-+++-++.-.++.+++ ++- .| +.|+.-++
T Consensus 523 kkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qk-VR~itAlalsalaeaa~Pygie~fDsVlkpLwk 601 (1172)
T KOG0213|consen 523 KKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQK-VRTITALALSALAEAATPYGIEQFDSVLKPLWK 601 (1172)
T ss_pred ccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchh-hhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 3456666644 577788888999999999999887754332 220 01 12222111
Q ss_pred c--cchHhHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Q 001144 384 M--EESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRA 448 (1141)
Q Consensus 384 ~--~e~~~~ks~l~l~YG~va~~ap~~~l~~rve~~I~~~i~~~~~~~kd~~lK~s~l~si~~i~~a 448 (1141)
. ....+.-++.+-+-||+.--..++-- ..+-..|+.-+...| .+.|+..|.-.|+-+.+++..
T Consensus 602 gir~hrgk~laafLkAigyliplmd~eya-~yyTrevmlil~rEf-~sPDeemkkivLKVv~qcc~t 666 (1172)
T KOG0213|consen 602 GIRQHRGKELAAFLKAIGYLIPLMDAEYA-SYYTREVMLILIREF-GSPDEEMKKIVLKVVKQCCAT 666 (1172)
T ss_pred HHHHccChHHHHHHHHHhhccccccHHHH-HHhHHHHHHHHHHhh-CCChHHHHHHHHHHHHHHhcc
Confidence 1 01123447888888998766655432 333344444333444 578999999999999888764
No 59
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=70.37 E-value=3.7 Score=39.06 Aligned_cols=69 Identities=20% Similarity=0.201 Sum_probs=54.4
Q ss_pred HHHHHhhhcCCCCchhhhhhccccCCccch---hhhhhH-HHHHHHHHhhccCCChhHHHHHHHHHHHHhccC
Q 001144 1050 MVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYA-TQVLSVILALLDDLDESVQLTAVSCLLTILKSS 1118 (1141)
Q Consensus 1050 ~l~~L~~~l~D~~~~VR~lslrGLgnl~~~---kv~~~~-~~lL~all~~l~d~~~~vvleam~~L~~lL~~l 1118 (1141)
.+..|.+-+.|+++.+|.-++..|++++.+ ...... ..+++.++..+.+.+..++..|+..|+++...-
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 555666677888899999999999999875 222222 367888888888888999999999999997643
No 60
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.75 E-value=5.1 Score=46.11 Aligned_cols=98 Identities=15% Similarity=0.174 Sum_probs=68.5
Q ss_pred cCCcccchhHHHHHHHHhhhccCCccchHHH-HHHHHhhhcCCCCchhhhhhccccCCccch-----hhhhhHHHHHHHH
Q 001144 1019 NRQQRFQREAAAAALSEFVRYSGGFDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPSI-----HIHQYATQVLSVI 1092 (1141)
Q Consensus 1019 ~s~~~~qRi~a~af~sELL~~~~~~~~l~~~-~l~~L~~~l~D~~~~VR~lslrGLgnl~~~-----kv~~~~~~lL~al 1092 (1141)
++...+-+--++..+.-+-.+.+..+.++.. -+-+|-.-++..++.||-.|-..+|||+.. +.-+-.|.+.+++
T Consensus 177 kskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~L 256 (550)
T KOG4224|consen 177 KSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPAL 256 (550)
T ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHH
Confidence 4444444444555555544444433334433 444566677788899999999999999875 2233446799999
Q ss_pred HhhccCCChhHHHHHHHHHHHHhc
Q 001144 1093 LALLDDLDESVQLTAVSCLLTILK 1116 (1141)
Q Consensus 1093 l~~l~d~~~~vvleam~~L~~lL~ 1116 (1141)
++.|+|.++.+-+.|=.+|+++-.
T Consensus 257 v~Lmd~~s~kvkcqA~lALrnlas 280 (550)
T KOG4224|consen 257 VDLMDDGSDKVKCQAGLALRNLAS 280 (550)
T ss_pred HHHHhCCChHHHHHHHHHHhhhcc
Confidence 999999999999999999888754
No 61
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=68.94 E-value=2.1e+02 Score=39.33 Aligned_cols=216 Identities=15% Similarity=0.128 Sum_probs=122.6
Q ss_pred HH-HHHHHHHHHHhcCCcchHHHHHHhhhHHHHHHHHHHhh-hcc-CCCC-------------------CC------CCh
Q 001144 901 LQ-AAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGS-CHG-LASS-------------------GQ------HEP 952 (1141)
Q Consensus 901 pl-aAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~-~~~-~~~~-------------------~~------~~P 952 (1141)
++ ||+|+|.-+=+.. |+|.++.++=.===++=|+|+-| .++ .+.. |. +-.
T Consensus 314 ~lcaA~~~lMK~SFDE--EhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs 391 (2195)
T KOG2122|consen 314 QLCAALCTLMKLSFDE--EHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCS 391 (2195)
T ss_pred hhHHHHHHHHHhhccH--HHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 77 9999999999988 99998865421111111344444 334 2111 11 111
Q ss_pred hHHHHHHHHHHHHhh--CChhHHHHHHhcCCCC----chhhhHhh--HHHHHHHHhhcCC-hhHHHHHHHHHhhhcCCcc
Q 001144 953 LRAILTSFQAFCECV--GDLEMRKILARDGEQN----DKEKWINL--IGDVAGCVSIKRP-KEVQTICLILTKSINRQQR 1023 (1141)
Q Consensus 953 ~~~aleAlk~lL~~~--g~~~~~~~le~~g~W~----~~~~~~~G--V~lLAram~~~~~-~~~~~i~~~L~~~L~s~~~ 1023 (1141)
.+-+++|+=+-|... ...+|.+.+=+.-.|. ....+-+- |+-||.+-.+.+. -.++.|++.||-+--.--+
T Consensus 392 ~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcte 471 (2195)
T KOG2122|consen 392 QRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTE 471 (2195)
T ss_pred hhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccc
Confidence 233444444444433 2355666666677797 33444443 5566666555544 6799999999987644333
Q ss_pred c-----chhHHHHHHHHhhhccC--Ccc-------------------------chHHH-HHHHHhhhcCCCCchhhhhhc
Q 001144 1024 F-----QREAAAAALSEFVRYSG--GFD-------------------------SLLEQ-MVEALCRHVSDESPTVRGLCL 1070 (1141)
Q Consensus 1024 ~-----qRi~a~af~sELL~~~~--~~~-------------------------~l~~~-~l~~L~~~l~D~~~~VR~lsl 1070 (1141)
. +-=-|.+|++-.|.+.. ... .+.+. .+.+|+..|+..+-||-.=+.
T Consensus 472 NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaC 551 (2195)
T KOG2122|consen 472 NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNAC 551 (2195)
T ss_pred cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecch
Confidence 2 22235689998877652 211 22222 566677777777766665555
Q ss_pred cccCCccch--hhhhhH--HHHHHHHHhhccCCChhHHHHHHHHHHHHhccC
Q 001144 1071 RGLVQIPSI--HIHQYA--TQVLSVILALLDDLDESVQLTAVSCLLTILKSS 1118 (1141)
Q Consensus 1071 rGLgnl~~~--kv~~~~--~~lL~all~~l~d~~~~vvleam~~L~~lL~~l 1118 (1141)
-.|-|+... +..++. -...+-+.+.+..++..|++.+...|.++|.+=
T Consensus 552 GTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 552 GTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 566676443 221111 011222333344468899999999999999865
No 62
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=67.56 E-value=3e+02 Score=33.73 Aligned_cols=135 Identities=13% Similarity=0.180 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhh--cccchhhHHHHhhhhcccccc
Q 001144 758 SAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAE--NTNSKIVFNEVLATAGKDIVT 835 (1141)
Q Consensus 758 ~~~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~--~h~~~Vv~~~LL~~~~~~~~~ 835 (1141)
.....-+++..++|....-+.+.+|..|++.++.-=..-+.+..-...++.+-...+ +-|.+.+. .++.++|.....
T Consensus 150 ~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-~~i~vLCsi~~~ 228 (464)
T PF11864_consen 150 NLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-PCIEVLCSIVNS 228 (464)
T ss_pred hHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-HHHHHHhhHhcc
Confidence 334556678888898888886666888888887773333344444566666666654 66777775 788788864333
Q ss_pred cccccccCCCChhhHHHHhhcC--cchHHHHHHHHHHHHccCCCccCCCCCCCCCCCCCCcccchhhHHHHHHHHHHHHh
Q 001144 836 KDISRLRGGWPMQDAFHAFSQH--AVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFR 913 (1141)
Q Consensus 836 ~d~~~~~~plP~d~~W~aLa~~--~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~plaAt~aL~Ell~ 913 (1141)
.+.. +..|+++-+= .+....++..|.+.|.+..+.. . . ..-.--+|+..+..++.
T Consensus 229 ~~l~--------~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~-~----------~----~~~~lRGAv~~l~~ll~ 285 (464)
T PF11864_consen 229 VSLC--------KPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQN-K----------R----DINVLRGAVFFLRMLLW 285 (464)
T ss_pred cccc--------hhHHHHHHHHHcCccHHHHHHHHHHHHcccCccc-c----------c----cHHHHhhHHHHHHHHHh
Confidence 3222 2279887442 4567788888888884221111 0 0 00112378888888888
Q ss_pred cCC
Q 001144 914 GGG 916 (1141)
Q Consensus 914 ~~~ 916 (1141)
+.+
T Consensus 286 ~~~ 288 (464)
T PF11864_consen 286 GSG 288 (464)
T ss_pred ccc
Confidence 764
No 63
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.03 E-value=39 Score=42.92 Aligned_cols=62 Identities=21% Similarity=0.225 Sum_probs=46.2
Q ss_pred HHHHHhhhcCCCCchhhhhhccccCCccchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHH
Q 001144 1050 MVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTI 1114 (1141)
Q Consensus 1050 ~l~~L~~~l~D~~~~VR~lslrGLgnl~~~kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~l 1114 (1141)
.++.+.+.++|||+.+|.-+||-|++|-.. ..+|-+|-|+-...-|...-|.-+|-.++-++
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsIRvp---~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKL 170 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSIRVP---MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKL 170 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhcchh---hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHH
Confidence 688999999999999999999999988533 44566666666666666666666665555553
No 64
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.70 E-value=4.2e+02 Score=34.37 Aligned_cols=66 Identities=18% Similarity=0.205 Sum_probs=52.9
Q ss_pred HHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhcccc
Q 001144 745 HSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNS 818 (1141)
Q Consensus 745 ~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~h~~ 818 (1141)
.|.+++|.|++..--.-|-+++-.++. +.+|..|++.+..-|.++ ++..|..+...|..+|..+-.
T Consensus 353 ~tIleCL~DpD~SIkrralELs~~lvn-------~~Nv~~mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP 418 (866)
T KOG1062|consen 353 STILECLKDPDVSIKRRALELSYALVN-------ESNVRVMVKELLEFLESS-DEDFKADIASKIAELAEKFAP 418 (866)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCC
Confidence 467888888877777777777777776 344888999999999888 889999999999999877653
No 65
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=60.87 E-value=2.1e+02 Score=39.27 Aligned_cols=75 Identities=20% Similarity=0.202 Sum_probs=56.9
Q ss_pred HHHHHHHHHhhhhhhcCChhHHHhhHHHHHHHHHHHHHHhccccccccCCCCCcccccchhhccccCCCCCCCccCCCch
Q 001144 563 ADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSR 642 (1141)
Q Consensus 563 ~~~Lq~il~~L~pWl~S~k~~EReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~f~~~p~~~~~p~~ 642 (1141)
|+.|-.++.+|+-|+.|+++.+|..|+...-+++.-+-.. +.. +.|
T Consensus 254 p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~-------------------l~~-------~~~-------- 299 (1266)
T KOG1525|consen 254 PQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQ-------------------LSE-------TYD-------- 299 (1266)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhh-------------------hcc-------cch--------
Confidence 7788889999999999999999999999999998844321 110 000
Q ss_pred hhhhhhhHHHHhhcCccCCChhHHHHHHHHHHHHH
Q 001144 643 EALCLGNRVIMYLPRCADTDSEVRKISAQILDQLF 677 (1141)
Q Consensus 643 ~~~~lG~lvg~l~p~C~D~~~~ir~~A~~~i~~Ll 677 (1141)
.+-..|.=||.|-..+||...++++-..|
T Consensus 300 ------~~~~~fl~r~~D~~~~vR~~~v~~~~~~l 328 (1266)
T KOG1525|consen 300 ------DLWSAFLGRFNDISVEVRMECVESIKQCL 328 (1266)
T ss_pred ------HHHHHHHHHhccCChhhhhhHHHHhHHHH
Confidence 12223334899999999999999988776
No 66
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=60.37 E-value=50 Score=38.47 Aligned_cols=149 Identities=16% Similarity=0.178 Sum_probs=88.3
Q ss_pred HhhccchhHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCHHHHHHHHHHHhccCCCCCcCCchHHHHHHHHHHHHHhhhhc
Q 001144 426 LLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLV 505 (1141)
Q Consensus 426 ~~~~kd~~lK~s~l~si~~i~~al~~~~~~~~~f~f~~k~eLl~~l~~~i~~Ep~~~L~s~~~~ll~~r~~a~~ait~L~ 505 (1141)
+++..+..+|..-.+. ||.++.++.... .+.+.. --+..++.+...++++. +|.+|+-|++.|+
T Consensus 132 ~l~~~~~~lR~~Aa~V---igt~~qNNP~~Q-e~v~E~--~~L~~Ll~~ls~~~~~~----------~r~kaL~AissLI 195 (342)
T KOG2160|consen 132 YLENSDAELRELAARV---IGTAVQNNPKSQ-EQVIEL--GALSKLLKILSSDDPNT----------VRTKALFAISSLI 195 (342)
T ss_pred HhcCCcHHHHHHHHHH---HHHHHhcCHHHH-HHHHHc--ccHHHHHHHHccCCCch----------HHHHHHHHHHHHH
Confidence 5567788888765554 455555543322 222211 13445565565555333 8999999999999
Q ss_pred ccCCCCChhHHHHHHHH----hh-hccccCCCCCCchHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHhhhhhhcCC
Q 001144 506 TVEPKLTIETRNHVMKA----TL-GFFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSP 580 (1141)
Q Consensus 506 ~L~P~l~~e~~~~ll~~----cl-sv~~lP~~~~~~~~~l~~~l~~ll~~ll~~~~~~~~~~~~~Lq~il~~L~pWl~S~ 580 (1141)
+-.|+=.. +++.+ ++ -++.- +.....+......++..+++.+.++++ ......+-+.+.-|..+.
T Consensus 196 Rn~~~g~~----~fl~~~G~~~L~~vl~~----~~~~~~lkrK~~~Ll~~Ll~~~~s~~d--~~~~~~f~~~~~~l~~~l 265 (342)
T KOG2160|consen 196 RNNKPGQD----EFLKLNGYQVLRDVLQS----NNTSVKLKRKALFLLSLLLQEDKSDED--IASSLGFQRVLENLISSL 265 (342)
T ss_pred hcCcHHHH----HHHhcCCHHHHHHHHHc----CCcchHHHHHHHHHHHHHHHhhhhhhh--HHHHhhhhHHHHHHhhcc
Confidence 87666422 22111 12 22221 112245566778888888888776432 222222446677777778
Q ss_pred hhHHHhhHHHHHHHHHHHHH
Q 001144 581 VEYQRRRSCLAVYEMLLKFR 600 (1141)
Q Consensus 581 k~~EReRA~~~~~~lL~~~~ 600 (1141)
..+-++.|+.....++.-+.
T Consensus 266 ~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 266 DFEVNEAALTALLSLLSELS 285 (342)
T ss_pred chhhhHHHHHHHHHHHHHHh
Confidence 88888888888877777444
No 67
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=59.94 E-value=15 Score=47.05 Aligned_cols=127 Identities=18% Similarity=0.202 Sum_probs=84.6
Q ss_pred chhhhHhhHHHHHHHHhh-cCChhHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccC-CccchHHHHHHHHhhhcCCC
Q 001144 984 DKEKWINLIGDVAGCVSI-KRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSG-GFDSLLEQMVEALCRHVSDE 1061 (1141)
Q Consensus 984 ~~~~~~~GV~lLAram~~-~~~~~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~-~~~~l~~~~l~~L~~~l~D~ 1061 (1141)
...-|+.|...+-...-. ---|.++.++-.++-.|.=+...=|+-+.-.+.-++--.. ....-++.++-.|..=-+|+
T Consensus 883 ~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~ 962 (1030)
T KOG1967|consen 883 QKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDN 962 (1030)
T ss_pred chhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCC
Confidence 445666666554432211 1234556666666666666666666666655555555433 11122344666666666666
Q ss_pred C---chhhhhhccccCCccch----hhhhhHHHHHHHHHhhccCCChhHHHHHHHH
Q 001144 1062 S---PTVRGLCLRGLVQIPSI----HIHQYATQVLSVILALLDDLDESVQLTAVSC 1110 (1141)
Q Consensus 1062 ~---~~VR~lslrGLgnl~~~----kv~~~~~~lL~all~~l~d~~~~vvleam~~ 1110 (1141)
+ -+||..+|++|+.++.. -..-|++.|+.|+...+||+...|..||.++
T Consensus 963 ~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 963 DNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred CcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 5 78999999999988763 4567999999999999999999999999876
No 68
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=59.90 E-value=54 Score=41.16 Aligned_cols=121 Identities=22% Similarity=0.222 Sum_probs=73.1
Q ss_pred HHHHHHHHHhhhcCCcc----cchhHHHHHHHHhhhc-cCCc--------cchHHHHHHHHhhhcCCCCchhhhhhcccc
Q 001144 1007 VQTICLILTKSINRQQR----FQREAAAAALSEFVRY-SGGF--------DSLLEQMVEALCRHVSDESPTVRGLCLRGL 1073 (1141)
Q Consensus 1007 ~~~i~~~L~~~L~s~~~----~qRi~a~af~sELL~~-~~~~--------~~l~~~~l~~L~~~l~D~~~~VR~lslrGL 1073 (1141)
-+.++..+.++++++.. .=|.+|+.-|+.+++. +... ..+.+.+...|.+...+.+...+.+.||||
T Consensus 391 t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaL 470 (574)
T smart00638 391 TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKAL 470 (574)
T ss_pred CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhh
Confidence 44556666666655432 3456777788888884 2211 123344555666666666778899999999
Q ss_pred CCccchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCCCCccchHHHHHH
Q 001144 1074 VQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSV 1132 (1141)
Q Consensus 1074 gnl~~~kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~l~~~~~~~~l~~ia~ 1132 (1141)
||+.....-.+ |...+.|=.+....+...|+.+|+++-. .....+.+.++.|..
T Consensus 471 GN~g~~~~i~~----l~~~l~~~~~~~~~iR~~Av~Alr~~a~-~~p~~v~~~l~~i~~ 524 (574)
T smart00638 471 GNAGHPSSIKV----LEPYLEGAEPLSTFIRLAAILALRNLAK-RDPRKVQEVLLPIYL 524 (574)
T ss_pred hccCChhHHHH----HHHhcCCCCCCCHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHc
Confidence 99986633111 1111223233445788999999997744 344556666666653
No 69
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=59.77 E-value=19 Score=38.42 Aligned_cols=117 Identities=16% Similarity=0.200 Sum_probs=69.7
Q ss_pred chhHHHHHHHhhhcCCCchh-hhcchH------------HHHHHHHHhhhhccHHHHHHHHHHHHHHhhcc--cccCccc
Q 001144 13 HLSVGALYVLKHLLPRSSEA-WHSKRP------------LLLEAVKSLLDEQNLAVQKAISELIVVMASHC--YLIGPSG 77 (1141)
Q Consensus 13 ~~Rvg~L~vlrhlins~~~~-~~~k~~------------~i~~~vk~~l~d~~~kVr~al~~~I~ama~~~--yl~~~~g 77 (1141)
++|+++|..|..++.+.++. +..+-+ .--..+..++.|++.|||-+-++++.+|-++. |+..-+
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae- 79 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAE- 79 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHH-
Confidence 57999999999999873332 222211 11234556778999999999999999998763 332211
Q ss_pred ccceeeeeccccccCccccccccccccCCCCCchHHHHHHHHHHHHHhccchhhhHhhHHHHHhhcccccccchhhhHHH
Q 001144 78 ELFVEYLVRHCALSDQKKYVNESSKVKIGAFCPTELRAICEKGLLLLTITIPEMQHILWPLLLKMIIPRAYTSAAATVCR 157 (1141)
Q Consensus 78 ~~~i~fiv~q~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~~~L~ll~ttv~~m~~vLWP~LL~~i~p~~yT~al~~ick 157 (1141)
-.. . +.... .. ++.+.+.|=..+--.|+..+--+.....++-++|
T Consensus 80 ------------~~~----~---~~~sF-----ts-----------lS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK 124 (182)
T PF13251_consen 80 ------------ESK----G---PSGSF-----TS-----------LSSTLASMIMELHRGLLLALQAEKSPPVLTQLLK 124 (182)
T ss_pred ------------hcC----C---CCCCc-----cc-----------HHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 000 0 00000 00 2333333333444455555555666678889999
Q ss_pred HHHHHHhh
Q 001144 158 CISELCRH 165 (1141)
Q Consensus 158 ~l~~La~k 165 (1141)
|++.|.+.
T Consensus 125 ~la~Lv~~ 132 (182)
T PF13251_consen 125 CLAVLVQA 132 (182)
T ss_pred HHHHHHcc
Confidence 99999754
No 70
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=58.56 E-value=43 Score=41.03 Aligned_cols=91 Identities=16% Similarity=0.255 Sum_probs=62.8
Q ss_pred hhhHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhcccCCccchhhHHHHHHHH-hhcCHHHHHHHHHHHHhhhccccchh
Q 001144 295 DDHSALLHRCLGILLQKVADRNYVCDKIDWMYKQANIAIPTNRLGLAKAMGLV-AASHLDAVLEMLKGILDNIGQSLFQR 373 (1141)
Q Consensus 295 ~~eK~fL~k~lG~~L~~~~~~~~V~~~L~~ll~~~~~~~~~ereG~A~~~G~~-A~~Hld~vL~~Le~~~k~~~~~~~~~ 373 (1141)
+.-|+--.-++|++ .|+|.+.+-.-++.+.+ +| |+.-|-|.|.++|++ |-.-....++.|+...++
T Consensus 566 DDVrRAAViAlGfv--c~~D~~~lv~tvelLs~--sh-N~hVR~g~AvaLGiacag~G~~~a~diL~~L~~D-------- 632 (926)
T COG5116 566 DDVRRAAVIALGFV--CCDDRDLLVGTVELLSE--SH-NFHVRAGVAVALGIACAGTGDKVATDILEALMYD-------- 632 (926)
T ss_pred hHHHHHHHHheeee--EecCcchhhHHHHHhhh--cc-chhhhhhhHHHhhhhhcCCccHHHHHHHHHHhhC--------
Confidence 34444444455554 35666666666666666 33 667899999999985 555556667788777663
Q ss_pred hhccccCcccccchHhHHHHHHHHHHHHHhcCCchhH
Q 001144 374 LLSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVI 410 (1141)
Q Consensus 374 ~~~~~k~~~~~~e~~~~ks~l~l~YG~va~~ap~~~l 410 (1141)
. .+-+|-..|..-|-|..++.+++.
T Consensus 633 -------~-----~dfVRQ~AmIa~~mIl~Q~n~~Ln 657 (926)
T COG5116 633 -------T-----NDFVRQSAMIAVGMILMQCNPELN 657 (926)
T ss_pred -------c-----HHHHHHHHHHHHHHHHhhcCcccC
Confidence 1 234788889999999999999876
No 71
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=58.35 E-value=18 Score=48.02 Aligned_cols=88 Identities=22% Similarity=0.148 Sum_probs=63.6
Q ss_pred HHHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccchhhhhhHHHHHHH
Q 001144 1012 LILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSV 1091 (1141)
Q Consensus 1012 ~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~kv~~~~~~lL~a 1091 (1141)
..|...++.+...=|.+|+.-+.++=. + +.....+...+.|+++.||.-+++.||.+.. +..+++
T Consensus 778 ~~L~~ll~D~d~~VR~aA~~aLg~~g~-~-------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-------~~a~~~ 842 (897)
T PRK13800 778 DAVRALTGDPDPLVRAAALAALAELGC-P-------PDDVAAATAALRASAWQVRQGAARALAGAAA-------DVAVPA 842 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCC-c-------chhHHHHHHHhcCCChHHHHHHHHHHHhccc-------cchHHH
Confidence 344456666665566666666666511 1 1133457778899999999999999998763 234577
Q ss_pred HHhhccCCChhHHHHHHHHHHHH
Q 001144 1092 ILALLDDLDESVQLTAVSCLLTI 1114 (1141)
Q Consensus 1092 ll~~l~d~~~~vvleam~~L~~l 1114 (1141)
++..+.|++..|..+|+.+|+++
T Consensus 843 L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 843 LVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHhcc
Confidence 78888999999999999999996
No 72
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=57.39 E-value=1.3e+02 Score=35.82 Aligned_cols=182 Identities=18% Similarity=0.238 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHHHHhccchhhh--HhhHHHHHhhcccccccchhhhHHHHHHHHHhhhcCCCCCccccccCCCCCCCHHH
Q 001144 111 TELRAICEKGLLLLTITIPEMQ--HILWPLLLKMIIPRAYTSAAATVCRCISELCRHRSSSSNVMLSECKARDDIPNPEE 188 (1141)
Q Consensus 111 ~~lr~~c~~~L~ll~ttv~~m~--~vLWP~LL~~i~p~~yT~al~~ick~l~~La~k~~~~~~~~~i~~~~~~~lPsp~~ 188 (1141)
+.+|.+|.+||-=++-.-|.+- .=--.-|+.+++...|. .-..++-.+.++...-..+. |. ..+++ -+.
T Consensus 122 D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~-~~~~l~~~lL~lLd~p~tR~--yl---~~~~d---L~~ 192 (371)
T PF14664_consen 122 DRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFS-ISESLLDTLLYLLDSPRTRK--YL---RPGFD---LES 192 (371)
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHh-HHHHHHHHHHHHhCCcchhh--hh---cCCcc---HHH
Confidence 4678899999877765544331 01114455666665565 66678888888865422111 10 00011 011
Q ss_pred HHHHHHHHhcCc-------c----cchhhHHHHHHHHHhhCCCCCcchhhhHHHhhhhhhhcccccccCCCCcchHhhHH
Q 001144 189 LFARLVVLLHDP-------L----AREQQATQILMVLYYLSPLFPTNIDLFWQDEIPKMKAYVSDTEDLKLDPSYQETWD 257 (1141)
Q Consensus 189 llaRllvl~~~P-------~----~~~~~g~~~L~lL~~l~~~ih~~l~~~W~~~IP~Ll~~L~~~~~~~~~~~~q~~We 257 (1141)
++| -..++ . +-.....++..+||+-...++-...+. .-|..|++.|.-.. .+=.
T Consensus 193 l~a----pftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~--~~lksLv~~L~~p~---------~~ir 257 (371)
T PF14664_consen 193 LLA----PFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF--RGLKSLVDSLRLPN---------PEIR 257 (371)
T ss_pred HHH----hhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc--hHHHHHHHHHcCCC---------HHHH
Confidence 111 21221 0 112336788899999999998887766 55888888886431 1245
Q ss_pred HHHHHHHHHhhhhhccchHHHHHHHHHHhhhccCCCC---------------------hhhHHHHHHHHHHHHhhcCChh
Q 001144 258 DMIINFLAESLDVVQETDWLISLGNAFTEQYVLYTPD---------------------DDHSALLHRCLGILLQKVADRN 316 (1141)
Q Consensus 258 ~~Ll~fL~~sl~~i~d~~W~~~L~~el~~ql~~y~~~---------------------~~eK~fL~k~lG~~L~~~~~~~ 316 (1141)
+.+++.+-+-+. +.-..|....... +++..|... ..+..++=.++|+.+...-+..
T Consensus 258 ~~Ildll~dllr-ik~p~w~~~~~~~--~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~g 334 (371)
T PF14664_consen 258 KAILDLLFDLLR-IKPPSWTESFLAG--RRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAG 334 (371)
T ss_pred HHHHHHHHHHHC-CCCCCcccchhhc--ccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcC
Confidence 566666666555 6667888876553 233333221 0244566677777777766666
Q ss_pred HHH
Q 001144 317 YVC 319 (1141)
Q Consensus 317 ~V~ 319 (1141)
++.
T Consensus 335 L~~ 337 (371)
T PF14664_consen 335 LLE 337 (371)
T ss_pred hHH
Confidence 665
No 73
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.46 E-value=52 Score=40.38 Aligned_cols=110 Identities=22% Similarity=0.184 Sum_probs=67.5
Q ss_pred HHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccC-CccchHHH-HHHHHhhhcCCCCchhhhhhccccCCccch-hh--
Q 001144 1007 VQTICLILTKSINRQQRFQREAAAAALSEFVRYSG-GFDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPSI-HI-- 1081 (1141)
Q Consensus 1007 ~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~-~~~~l~~~-~l~~L~~~l~D~~~~VR~lslrGLgnl~~~-kv-- 1081 (1141)
+.+++.-|...+.+..+.=..=|.=.++.|-..+. .-+++++. ++-.|..-+..+++.|+.-+||.+|||+-| +.
T Consensus 235 v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QT 314 (514)
T KOG0166|consen 235 VAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQT 314 (514)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHH
Confidence 44555555555555554333222333344443333 33344444 666777888899999999999999999887 11
Q ss_pred -hhhHHHHHHHHHhhcc-CCChhHHHHHHHHHHHHhc
Q 001144 1082 -HQYATQVLSVILALLD-DLDESVQLTAVSCLLTILK 1116 (1141)
Q Consensus 1082 -~~~~~~lL~all~~l~-d~~~~vvleam~~L~~lL~ 1116 (1141)
...-...|+++.+.+. .+.+.+.-||--.+|+|-.
T Consensus 315 q~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA 351 (514)
T KOG0166|consen 315 QVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA 351 (514)
T ss_pred HHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc
Confidence 0111345677777666 3455688899999999765
No 74
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=55.10 E-value=74 Score=30.31 Aligned_cols=72 Identities=13% Similarity=0.031 Sum_probs=55.0
Q ss_pred HHhhCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhcCcHHHHHHH
Q 001144 731 VCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLET 805 (1141)
Q Consensus 731 ~~k~L~~~el~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i~~~~~r~~~ 805 (1141)
+.+. ....+..++...+.++.|.+...-..|++.|-.+.+..+.++-+. .++|.++++.- ....++++|+++
T Consensus 17 l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~-f~~IF~~L~kl-~~D~d~~Vr~~a 88 (97)
T PF12755_consen 17 LGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPY-FNEIFDALCKL-SADPDENVRSAA 88 (97)
T ss_pred chHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HcCCchhHHHHH
Confidence 3344 455567777889999999988888999999999999977777455 78888888764 444567888765
No 75
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=54.93 E-value=4.5e+02 Score=31.62 Aligned_cols=325 Identities=11% Similarity=0.123 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHHhcCCchh----HHHHHHHHHHHHHHHHHhhccchh--HHHHHHHHHHHHHHHHhhhhhcCCCcCCCCH
Q 001144 391 HAALALMYGYAAKYAPSTV----IEARIDALVGTNMLSRLLHVRHHT--AKQAVITAIDLLGRAVINAAENGASFPLKKR 464 (1141)
Q Consensus 391 ks~l~l~YG~va~~ap~~~----l~~rve~~I~~~i~~~~~~~kd~~--lK~s~l~si~~i~~al~~~~~~~~~f~f~~k 464 (1141)
...++.++-++......+. .....+..++..++..+...-+.. .....+..+..+.+.+.+.- .-.+-
T Consensus 60 ~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l------~~~~q 133 (415)
T PF12460_consen 60 CHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSL------SPEKQ 133 (415)
T ss_pred HHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhC------CHHHH
Confidence 3455566666666554443 222334445555555444221111 33566666666666665521 12223
Q ss_pred HHHHHHHHHHhc-c---CCCCCcCCchHHHHHHHHHHHHHhhhhcccCCCCChhHHHHHHHHhhh-ccccCCCCCCchHH
Q 001144 465 DQLLDYILTLMG-R---EENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATLG-FFALPNDPIDVVNP 539 (1141)
Q Consensus 465 ~eLl~~l~~~i~-~---Ep~~~L~s~~~~ll~~r~~a~~ait~L~~L~P~l~~e~~~~ll~~cls-v~~lP~~~~~~~~~ 539 (1141)
.++++.+..+.- . .|...-.++ +. -+-++.......-++.++|.....+-.++++.++. ..... + +.
T Consensus 134 ~~~~~~~~~lf~~~~~~~~~~~~~~~-~~-~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~-----~-~~ 205 (415)
T PF12460_consen 134 QEILDELYSLFLSPKSFSPFQPSSST-IS-EQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSE-----D-EF 205 (415)
T ss_pred HHHHHHHHHHHccccccCCCCccccc-cc-cccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCC-----C-hH
Confidence 344554444332 1 111111110 00 01234444555666778888876666667766652 22211 1 44
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHhhhhhh-cCChhHHHhhHHHHHHHHHHHHHHhccccccccCCCCCccc
Q 001144 540 LIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYV-SSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTH 618 (1141)
Q Consensus 540 l~~~l~~ll~~ll~~~~~~~~~~~~~Lq~il~~L~pWl-~S~k~~EReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~ 618 (1141)
......+++..++-+.+. .+.+..+++.+..=+ .+...-.|.+++.+..-+.|-.+-+
T Consensus 206 ~~~~~~~~la~LvNK~~~-----~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R---------------- 264 (415)
T PF12460_consen 206 SRLAALQLLASLVNKWPD-----DDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMR---------------- 264 (415)
T ss_pred HHHHHHHHHHHHHcCCCC-----hhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHc----------------
Confidence 566677888888888544 346666666665544 6778889999999998888866632
Q ss_pred ccchhhccccCCCCCCCccCCCchhhhhhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCChhhh
Q 001144 619 IKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELS 698 (1141)
Q Consensus 619 ~~~l~~~~~~~f~~~p~~~~~p~~~~~~lG~lvg~l~p~C~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~ 698 (1141)
.. |. ....+..+++.|.= ++++..|+++...++ .. . ++.
T Consensus 265 -----~~--------~~-------~~~~~~~L~~lL~~------~~~g~~aA~~f~il~-------~d---~-----~~~ 303 (415)
T PF12460_consen 265 -----GH--------PL-------ATELLDKLLELLSS------PELGQQAAKAFGILL-------SD---S-----DDV 303 (415)
T ss_pred -----CC--------ch-------HHHHHHHHHHHhCC------hhhHHHHHHHHhhHh-------cC---c-----HHh
Confidence 11 10 02256677775543 789999999998886 11 0 000
Q ss_pred hhhhcchhHHHHHhhcCCCCCChhHH--HHHHHHHHhhCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccc
Q 001144 699 YGALSSLEDVIAILRSDASIDPSEVF--NRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNE 776 (1141)
Q Consensus 699 ~~~l~~l~~l~~~~~~~~~~~~~~~~--~~i~~~~~k~L~~~el~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~ 776 (1141)
+.+ ..+.....+ +++.. .++-.++++..+.+...-..--.+|..+++.--.+
T Consensus 304 ---l~~-----------~~~a~vklLykQR~F~------------~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~ 357 (415)
T PF12460_consen 304 ---LNK-----------ENHANVKLLYKQRFFT------------QVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKS 357 (415)
T ss_pred ---cCc-----------cccchhhhHHhHHHHH------------HHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHH
Confidence 000 000001111 11111 11112234444433222223334455555543333
Q ss_pred cchhhHhHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhcccc
Q 001144 777 LSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNS 818 (1141)
Q Consensus 777 l~e~dV~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~h~~ 818 (1141)
+-..++++|+--+.+.| +..++.++..++.++..+....++
T Consensus 358 vl~~~l~~LlPLLlqsL-~~~~~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 358 VLLPELPTLLPLLLQSL-SLPDADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHcCHH
Confidence 32344777887788877 566678999999999988877643
No 76
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=54.29 E-value=2.5e+02 Score=37.88 Aligned_cols=113 Identities=13% Similarity=0.192 Sum_probs=71.6
Q ss_pred chhhhHhhHHHHHHHHhhcCChhHHH-HHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCC
Q 001144 984 DKEKWINLIGDVAGCVSIKRPKEVQT-ICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDES 1062 (1141)
Q Consensus 984 ~~~~~~~GV~lLAram~~~~~~~~~~-i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~ 1062 (1141)
.....+++|.....+++--.++.++. +++. |.-.++|-. +... -|-++.+|...++|.+
T Consensus 571 ~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~-------------i~~LC~FFG--k~ks-----ND~iLshLiTfLNDkD 630 (1431)
T KOG1240|consen 571 ELQALHHTVEQMVSSLLSDSPPIVKRALLES-------------IIPLCVFFG--KEKS-----NDVILSHLITFLNDKD 630 (1431)
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHH-------------HHHHHHHhh--hccc-----ccchHHHHHHHhcCcc
Confidence 44456677777766666555544442 2222 233333322 1111 1337788888899999
Q ss_pred chhhhhhccccCCccch-hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhc
Q 001144 1063 PTVRGLCLRGLVQIPSI-HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILK 1116 (1141)
Q Consensus 1063 ~~VR~lslrGLgnl~~~-kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~ 1116 (1141)
+..|..-...+..++.- .-+-....++|-+..|+-|.++-|+..|+.+|+.+++
T Consensus 631 w~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik 685 (1431)
T KOG1240|consen 631 WRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIK 685 (1431)
T ss_pred HHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHH
Confidence 99998887777755432 1122345678889999999999998888888887765
No 77
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=53.12 E-value=3.1e+02 Score=30.71 Aligned_cols=144 Identities=16% Similarity=0.143 Sum_probs=85.0
Q ss_pred cccchhhHhHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhc-----------ccchhhHHHHhhhhccc-cccccccccc
Q 001144 775 NELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAEN-----------TNSKIVFNEVLATAGKD-IVTKDISRLR 842 (1141)
Q Consensus 775 ~~l~e~dV~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~-----------h~~~Vv~~~LL~~~~~~-~~~~d~~~~~ 842 (1141)
..+..+++.+|.+.+..+|-.+.+.-+-..+-.+...+++. .|++-+. .+|..+..+ ....+++|+.
T Consensus 87 ~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~-~~l~~i~~~~~~~~~iTRRS 165 (255)
T PF10350_consen 87 SLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELPEEWLD-ELLEAIESKGQQKLSITRRS 165 (255)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHHH-HHHHHHhccccccccccccc
Confidence 33433337777777777777777666655555555554431 2344443 555322222 1112577778
Q ss_pred CCCChhhHHHHhhcCc----chHHHHHHHHHHHHccCCCccCCCCCCCCCCCCCCcccchhhHHHHHHHHHHHHhcCCcc
Q 001144 843 GGWPMQDAFHAFSQHA----VLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKV 918 (1141)
Q Consensus 843 ~plP~d~~W~aLa~~~----~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~plaAt~aL~Ell~~~~~~ 918 (1141)
-.+|+-= =-.+.+++ .+...+|+.|+..-+......++ .+ .+..-+=|.+.|..+|... .
T Consensus 166 AGLP~~i-~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~---~~----------~d~~qVHAlNiLr~if~ds--~ 229 (255)
T PF10350_consen 166 AGLPFLI-LAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHED---EK----------SDLPQVHALNILRAIFRDS--K 229 (255)
T ss_pred CcHHHHH-HHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccc---cc----------cchHHHHHHHHHHHHHhcc--h
Confidence 8888631 22334555 57778888888877653332211 00 0112456899999999999 9
Q ss_pred hHHHHHHhhhHHHHHHH
Q 001144 919 GKKAVEKSYAPVLAALT 935 (1141)
Q Consensus 919 ~~~av~~~fp~Lf~aLL 935 (1141)
....+..++++.|..=+
T Consensus 230 L~~~~~~yi~~~l~lai 246 (255)
T PF10350_consen 230 LSEDVSPYIEDALILAI 246 (255)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 99999999988875443
No 78
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.59 E-value=1.7e+02 Score=37.69 Aligned_cols=219 Identities=15% Similarity=0.139 Sum_probs=130.4
Q ss_pred cchHHHHHHHHHHHHccCCCccCCCCCCCCCCCCCCcccchhhHHHHHHHHHHHHhcCCcchHHHHHHhhhHHHHH----
Q 001144 858 AVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAA---- 933 (1141)
Q Consensus 858 ~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~plaAt~aL~Ell~~~~~~~~~av~~~fp~Lf~a---- 933 (1141)
+++++.+....-+.|+++.++-. ==|+.||.+-+..+| +..+.....|.+++.-
T Consensus 137 ~EmardlapeVe~Ll~~~~~~ir--------------------KKA~Lca~r~irK~P--~l~e~f~~~~~~lL~ek~hG 194 (866)
T KOG1062|consen 137 PEMARDLAPEVERLLQHRDPYIR--------------------KKAALCAVRFIRKVP--DLVEHFVIAFRKLLCEKHHG 194 (866)
T ss_pred HHHhHHhhHHHHHHHhCCCHHHH--------------------HHHHHHHHHHHHcCc--hHHHHhhHHHHHHHhhcCCc
Confidence 44555555566666665544432 237899999999999 6655544445444431
Q ss_pred -HHHHHhhhccCCCCCCCChhHHHHHHHHHHHHhhCChhHHHHHHh--cCCCCchhhhHhhHH---------HHHHHHhh
Q 001144 934 -LTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILAR--DGEQNDKEKWINLIG---------DVAGCVSI 1001 (1141)
Q Consensus 934 -LL~ql~~~~~~~~~~~~~P~~~aleAlk~lL~~~g~~~~~~~le~--~g~W~~~~~~~~GV~---------lLAram~~ 1001 (1141)
|+.-++-+.++. ..+| .+++-||.+.. +.+..++. .++. +++.=+.||+ -+-|-+-+
T Consensus 195 VL~~~l~l~~e~c---~~~~--~~l~~fr~l~~-----~lV~iLk~l~~~~y-speydv~gi~dPFLQi~iLrlLriLGq 263 (866)
T KOG1062|consen 195 VLIAGLHLITELC---KISP--DALSYFRDLVP-----SLVKILKQLTNSGY-SPEYDVHGISDPFLQIRILRLLRILGQ 263 (866)
T ss_pred eeeeHHHHHHHHH---hcCH--HHHHHHHHHHH-----HHHHHHHHHhcCCC-CCccCccCCCchHHHHHHHHHHHHhcC
Confidence 111111111110 1222 35555555322 23444444 2222 2222222221 23344444
Q ss_pred cCChhHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccC---CccchHHHHHHHHhhhcCCCCchhhhhhccccCCccc
Q 001144 1002 KRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSG---GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS 1078 (1141)
Q Consensus 1002 ~~~~~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~---~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~ 1078 (1141)
. .+.....|+.++--.-+.-|..|=++=|++-|=+.+-- .+..+..-.+|.|.+.+..++-..|=++|.+|+-...
T Consensus 264 ~-d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~ 342 (866)
T KOG1062|consen 264 N-DADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQ 342 (866)
T ss_pred C-CccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhc
Confidence 3 44677777777777777777777778888888776622 3455666689999999999999999999999996633
Q ss_pred h---hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHH
Q 001144 1079 I---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTI 1114 (1141)
Q Consensus 1079 ~---kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~l 1114 (1141)
- -|.+|+.+++.| ++|+|..+..+||.-+-.+
T Consensus 343 ~d~~avqrHr~tIleC----L~DpD~SIkrralELs~~l 377 (866)
T KOG1062|consen 343 QDPTAVQRHRSTILEC----LKDPDVSIKRRALELSYAL 377 (866)
T ss_pred CCcHHHHHHHHHHHHH----hcCCcHHHHHHHHHHHHHH
Confidence 2 567788777665 4677888888887654443
No 79
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.44 E-value=6.3e+02 Score=32.54 Aligned_cols=269 Identities=15% Similarity=0.198 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhcccchh------hHHHHhhhhcccc
Q 001144 760 EGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKI------VFNEVLATAGKDI 833 (1141)
Q Consensus 760 ~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~h~~~V------v~~~LL~~~~~~~ 833 (1141)
.|-..|.+.|++++. . +..-+..+-..|. ..++.+..++...||-||+..|+.- .+ .||.|-
T Consensus 163 kAIl~lykvFLkYPe-----A-lr~~FprL~EkLe-DpDp~V~SAAV~VICELArKnPknyL~LAP~ff-kllttS---- 230 (877)
T KOG1059|consen 163 KAILLLYKVFLKYPE-----A-LRPCFPRLVEKLE-DPDPSVVSAAVSVICELARKNPQNYLQLAPLFY-KLLVTS---- 230 (877)
T ss_pred HHHHHHHHHHHhhhH-----h-HhhhHHHHHHhcc-CCCchHHHHHHHHHHHHHhhCCcccccccHHHH-HHHhcc----
Confidence 555666677777652 2 2222233333332 3578999999999999999999743 33 333110
Q ss_pred cccccccccCCCChhhHHHHhhc----CcchHHHHHHHHHHHHccCCCccCCCCCCCCCCCCCCcccchhhHHHHHHHHH
Q 001144 834 VTKDISRLRGGWPMQDAFHAFSQ----HAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALT 909 (1141)
Q Consensus 834 ~~~d~~~~~~plP~d~~W~aLa~----~~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~plaAt~aL~ 909 (1141)
.--|=+-++-+.+|+ +|.+..++++-|...+. +-.||.-||
T Consensus 231 --------sNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~---------------------------sT~AmSLlY 275 (877)
T KOG1059|consen 231 --------SNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELME---------------------------STVAMSLLY 275 (877)
T ss_pred --------CCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHH---------------------------hhHHHHHHH
Confidence 111111222222232 23333333333333222 335788888
Q ss_pred HHHhcCCcchHHHHHHhhhHHHHHHHHHHhhhccCCCCCCCChhHHHHHHHHHHHHhhCChhHHHHHHhcCCCCchhhhH
Q 001144 910 AFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILARDGEQNDKEKWI 989 (1141)
Q Consensus 910 Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~lL~~~g~~~~~~~le~~g~W~~~~~~~ 989 (1141)
|=...- ++..+-.+.+......+.|++-|+.|+.-+ ++.--+
T Consensus 276 ECvNTV----------------------Va~s~s~g~~d~~asiqLCvqKLr~fieds----------------DqNLKY 317 (877)
T KOG1059|consen 276 ECVNTV----------------------VAVSMSSGMSDHSASIQLCVQKLRIFIEDS----------------DQNLKY 317 (877)
T ss_pred HHHHHh----------------------eeehhccCCCCcHHHHHHHHHHHhhhhhcC----------------CccHHH
Confidence 633221 111111111122233567777777776521 111222
Q ss_pred hhHHHHH-HHHhhcCChhHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCch-hhh
Q 001144 990 NLIGDVA-GCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPT-VRG 1067 (1141)
Q Consensus 990 ~GV~lLA-ram~~~~~~~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~-VR~ 1067 (1141)
+.+|| +.+...|++-+.+=-..+++-|....+.=|+-|.=.+-+.++... +.+++..|+.++.+.+++ .|
T Consensus 318 --lgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkN-----l~eIVk~LM~~~~~ae~t~yr- 389 (877)
T KOG1059|consen 318 --LGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKN-----LMEIVKTLMKHVEKAEGTNYR- 389 (877)
T ss_pred --HHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHhccchhHH-
Confidence 33455 557778899999999999999999999999999877777666442 344777777777666542 11
Q ss_pred hhccccCCccchhhhhhHHHHHHHHHhhccC--CChhHHHHHHHHHHHHhccCCCCCccchHHHHHHHhc
Q 001144 1068 LCLRGLVQIPSIHIHQYATQVLSVILALLDD--LDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLR 1135 (1141)
Q Consensus 1068 lslrGLgnl~~~kv~~~~~~lL~all~~l~d--~~~~vvleam~~L~~lL~~l~~~~~~~~l~~ia~rlR 1135 (1141)
.+....+++.|..+=+. .|=+--+.-+--|.+|=+.-....++-.++++++|.+
T Consensus 390 --------------dell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~ 445 (877)
T KOG1059|consen 390 --------------DELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVP 445 (877)
T ss_pred --------------HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheech
Confidence 12233344444443332 1112223334445555444445557777888888754
No 80
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=51.69 E-value=4.7e+02 Score=33.52 Aligned_cols=128 Identities=9% Similarity=0.071 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhcccCCccch-hhHHHHHHHHhhcCHHHHHHHHHHHHhhhccccchhhhcc
Q 001144 299 ALLHRCLGILLQKVADRNYVCDKIDWMYKQANIAIPTNR-LGLAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRLLSF 377 (1141)
Q Consensus 299 ~fL~k~lG~~L~~~~~~~~V~~~L~~ll~~~~~~~~~er-eG~A~~~G~~A~~Hld~vL~~Le~~~k~~~~~~~~~~~~~ 377 (1141)
-|+++-+-.+..+....+++.+=+..++.+-+- +..++ |-+-..++-++.. +| ..|.|+ ..+=++.+.
T Consensus 368 l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~-~~~~iQ~~~L~~lptv~e~-iD------~~~vk~---~ilP~l~~l 436 (700)
T KOG2137|consen 368 LFILENMDLLKEKTPPEEVKEKILPLLYRSLED-SDVQIQELALQILPTVAES-ID------VPFVKQ---AILPRLKNL 436 (700)
T ss_pred hhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcC-cchhhHHHHHHhhhHHHHh-cc------HHHHHH---HHHHHhhcc
Confidence 577788888888887776555444444443322 22223 4444444433322 22 123332 122223332
Q ss_pred ccCcccccchHhHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Q 001144 378 FSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGR 447 (1141)
Q Consensus 378 ~k~~~~~~e~~~~ks~l~l~YG~va~~ap~~~l~~rve~~I~~~i~~~~~~~kd~~lK~s~l~si~~i~~ 447 (1141)
+... ..-.+|.+++.|.|.++.....-.++. .+-.|++++ ...|+.+++.+++....+.-
T Consensus 437 ~~~t----t~~~vkvn~L~c~~~l~q~lD~~~v~d-----~~lpi~~~~-~~~dp~iv~~~~~i~~~l~~ 496 (700)
T KOG2137|consen 437 AFKT----TNLYVKVNVLPCLAGLIQRLDKAAVLD-----ELLPILKCI-KTRDPAIVMGFLRIYEALAL 496 (700)
T ss_pred hhcc----cchHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHh-cCCCcHHHHHHHHHHHHHHh
Confidence 2222 234689999999999986665544432 223455554 45799999998887765443
No 81
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=51.28 E-value=63 Score=40.57 Aligned_cols=132 Identities=16% Similarity=0.082 Sum_probs=90.0
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccCCcc-------chHHHHHHHHhhhcCCCC
Q 001144 990 NLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFD-------SLLEQMVEALCRHVSDES 1062 (1141)
Q Consensus 990 ~GV~lLAram~~~~~~~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~-------~l~~~~l~~L~~~l~D~~ 1062 (1141)
..|.+--..++.-.|..+-+=+.++...|.|..-.-|-.-+-+++-++-+...+. .-+..+++.|.+++.|.+
T Consensus 280 k~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~ 359 (1128)
T COG5098 280 KDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTY 359 (1128)
T ss_pred HHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccc
Confidence 3455444555555666666778888999988887777655555444443332111 123448999999999999
Q ss_pred chhhhhhccccCCccch--hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCCC
Q 001144 1063 PTVRGLCLRGLVQIPSI--HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKD 1121 (1141)
Q Consensus 1063 ~~VR~lslrGLgnl~~~--kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~l~~~ 1121 (1141)
|-+|-=+++|+.-+-.. +..+-+..+..-....+.|...-|.--|+..++++|-+=...
T Consensus 360 py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF~ 420 (1128)
T COG5098 360 PYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPFA 420 (1128)
T ss_pred hHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCChh
Confidence 99999999999866332 222233455566667777878888899999999999765443
No 82
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.61 E-value=6.9e+02 Score=32.51 Aligned_cols=327 Identities=16% Similarity=0.113 Sum_probs=151.7
Q ss_pred HHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchh------hHhHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhc
Q 001144 742 ATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSET------DVSRTTQSLLSAAVHITDKHLRLETLGAISCLAEN 815 (1141)
Q Consensus 742 ~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~------dV~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~ 815 (1141)
++|..++..+...+.+.-..|.+++..++..||.++... -|+.+|+-|... .+-+|..++--++.|++-
T Consensus 122 d~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds-----rE~IRNe~iLlL~eL~k~ 196 (970)
T KOG0946|consen 122 DNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS-----REPIRNEAILLLSELVKD 196 (970)
T ss_pred hhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh-----hhhhchhHHHHHHHHHcc
Confidence 445555555555555666899999999999999998422 133444443322 245666777777777776
Q ss_pred ccchhhHHHHhhhhcccccccccccccCCCChhhHHHHhhcCcchHH-HH----HHHHHHHHccCCCccCCCCCCCCCCC
Q 001144 816 TNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSF-LF----LEHLISALNQTPFVKGDMEKGDYSSH 890 (1141)
Q Consensus 816 h~~~Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~aLa~~~~l~~-~v----L~~LL~~L~~~p~~~e~~~~~~~~~~ 890 (1141)
.+. |. .|+ .|+ =-|+|++-++..++.+=+ .| |-.|.-.|+++-.- +++...
T Consensus 197 n~~--IQ-KlV--------AFE-------NaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SN------Q~~FrE 252 (970)
T KOG0946|consen 197 NSS--IQ-KLV--------AFE-------NAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISN------QNFFRE 252 (970)
T ss_pred Cch--HH-HHH--------HHH-------HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcch------hhHHhc
Confidence 552 21 222 111 123668888888873322 33 33334444433211 111111
Q ss_pred CCCcccchhhHHHHHHHHHHHHhcCCcchHH-HHHHhhhHHHHHHHHHHhhhccCCCCCCCChhHHHHHHHHHHHHhhCC
Q 001144 891 SADTWIDDDILQAAILALTAFFRGGGKVGKK-AVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGD 969 (1141)
Q Consensus 891 ~~~~~~~~~~plaAt~aL~Ell~~~~~~~~~-av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~lL~~~g~ 969 (1141)
..+ +.-|..+|... ++.+ .|..+=+|=...+.+-+.-+--+.+| -+|...+-.+=|.+..+.+.
T Consensus 253 ~~~-----------i~rL~klL~~f--~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP--~Nt~~~~~q~qk~l~ss~ll 317 (970)
T KOG0946|consen 253 GSY-----------IPRLLKLLSVF--EFGDGEVFGWSTQRVQNVIEALQIVRSLVSP--GNTSSITHQNQKALVSSHLL 317 (970)
T ss_pred ccc-----------HHHHHhhcCcc--cccCcccccccHHHHHHHHHHHHHHHHhcCC--CCcHHHHHHHHHHHHHcchH
Confidence 111 12233444444 4444 33333333222221111111111222 24545555555555555555
Q ss_pred hhHHHHHHhcCCCC--chhhhHhhHHH-----------HHHHHhhcCChhHHHHHHHHHhhhcCCcc-cchhHHHHHHHH
Q 001144 970 LEMRKILARDGEQN--DKEKWINLIGD-----------VAGCVSIKRPKEVQTICLILTKSINRQQR-FQREAAAAALSE 1035 (1141)
Q Consensus 970 ~~~~~~le~~g~W~--~~~~~~~GV~l-----------LAram~~~~~~~~~~i~~~L~~~L~s~~~-~qRi~a~af~sE 1035 (1141)
......+.-.|... -++++. .|.. .|+.++-+.++-.+.|+-.+..+.++... ..|.+..=+|--
T Consensus 318 ~~Lc~il~~~~vp~dIltesii-tvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s 396 (970)
T KOG0946|consen 318 DVLCTILMHPGVPADILTESII-TVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRS 396 (970)
T ss_pred HHHHHHHcCCCCcHhHHHHHHH-HHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHH
Confidence 55545444444321 222221 1222 22222222332355566666666555544 455554434433
Q ss_pred hhhccC-CccchHHHHHHH-HhhhcCCCC--chhhhhhccccCCc-----------cch---hhhhhHHHHHHHHHhhcc
Q 001144 1036 FVRYSG-GFDSLLEQMVEA-LCRHVSDES--PTVRGLCLRGLVQI-----------PSI---HIHQYATQVLSVILALLD 1097 (1141)
Q Consensus 1036 LL~~~~-~~~~l~~~~l~~-L~~~l~D~~--~~VR~lslrGLgnl-----------~~~---kv~~~~~~lL~all~~l~ 1097 (1141)
++...+ +.. .++.. |-...++.+ -.--.+-+.|+.+. ..| +..++..+++..-+.---
T Consensus 397 ~l~dN~~gq~----~~l~tllp~~~nst~Nsl~ag~l~~~~l~s~d~~~nwFt~v~lmh~l~dn~~~kEeLlrV~l~~~~ 472 (970)
T KOG0946|consen 397 YLYDNDDGQR----KFLKTLLPSSTNSTSNSLSAGQLLLVGLSSTDSLDNWFTAVILMHLLQDNDQLKEELLRVPLAVDT 472 (970)
T ss_pred HHhcchhhHH----HHHHHHhhhhccccccchhhhhHHHHhhccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcccC
Confidence 444333 322 22222 222333322 12223345555532 111 445666666666555444
Q ss_pred CCChhHHHHHHHHHHHHhcc
Q 001144 1098 DLDESVQLTAVSCLLTILKS 1117 (1141)
Q Consensus 1098 d~~~~vvleam~~L~~lL~~ 1117 (1141)
+.++.-++...++.......
T Consensus 473 gn~p~tlL~~~ct~~~~~~t 492 (970)
T KOG0946|consen 473 GNDPDTLLFQQCTNLKLQGT 492 (970)
T ss_pred CCCchHHHHHHHHHHHHHhh
Confidence 44556666777777666663
No 83
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=48.67 E-value=51 Score=37.73 Aligned_cols=109 Identities=17% Similarity=0.211 Sum_probs=75.2
Q ss_pred hHHHHHHHHH-hhhcCCcccchhHHHHHHH--HhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccch---
Q 001144 1006 EVQTICLILT-KSINRQQRFQREAAAAALS--EFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--- 1079 (1141)
Q Consensus 1006 ~~~~i~~~L~-~~L~s~~~~qRi~a~af~s--ELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~--- 1079 (1141)
.+..++..++ |.+++.+..=|..|+-.+. =++ +..+..+.+..+...++..++.||..+++++..+...
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Ll-----d~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~ 97 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLCCLL-----DKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGI 97 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh-----ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCc
Confidence 4568887766 9999988866666653222 122 2234455555565666555899999999999977442
Q ss_pred -hh--------hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCC
Q 001144 1080 -HI--------HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSS 1119 (1141)
Q Consensus 1080 -kv--------~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~l~ 1119 (1141)
.+ ......++..+.+.+++.++++...|..|+.|++-.-.
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~ 146 (298)
T PF12719_consen 98 DIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR 146 (298)
T ss_pred hhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC
Confidence 11 12345778888888888888999999999999886543
No 84
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=48.15 E-value=1.4e+02 Score=33.67 Aligned_cols=62 Identities=15% Similarity=0.207 Sum_probs=40.8
Q ss_pred chhHHHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhcC-cHHHHHHHHHHHHHhhhcccch
Q 001144 756 KQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHIT-DKHLRLETLGAISCLAENTNSK 819 (1141)
Q Consensus 756 ~~~~~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i~-~~~~r~~~l~ai~lLa~~h~~~ 819 (1141)
+.+..+|...+..+++.+...- +. +.+|++.++++..--. ....|..+.+.+..|.++|..+
T Consensus 54 ~~~~~~~l~gl~~L~~~~~~~~-~~-~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~ 116 (262)
T PF14500_consen 54 HACVQPALKGLLALVKMKNFSP-ES-AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREA 116 (262)
T ss_pred HhhHHHHHHHHHHHHhCcCCCh-hh-HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHH
Confidence 4455666666677775544322 23 7778888877553322 3577899999999999998643
No 85
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.10 E-value=48 Score=41.72 Aligned_cols=110 Identities=16% Similarity=0.129 Sum_probs=78.4
Q ss_pred hHHHHHHHHHhhhcCCcccchhHHH--HHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccch--hh
Q 001144 1006 EVQTICLILTKSINRQQRFQREAAA--AALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--HI 1081 (1141)
Q Consensus 1006 ~~~~i~~~L~~~L~s~~~~qRi~a~--af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~--kv 1081 (1141)
++-+++.+.++.-+++.-..|+... +|+.-|=+.+. ...++..+..++.++...++-.||-=+++=|.-+.-. .+
T Consensus 41 eflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~-e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~ei 119 (892)
T KOG2025|consen 41 EFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDK-EEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEI 119 (892)
T ss_pred HHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCc-hhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccccc
Confidence 4667777777777888888888764 34444434443 4458888999999999999999996665544433221 11
Q ss_pred -hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhc
Q 001144 1082 -HQYATQVLSVILALLDDLDESVQLTAVSCLLTILK 1116 (1141)
Q Consensus 1082 -~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~ 1116 (1141)
.-....+..+++.-+.|....|..+|+.+|+++=.
T Consensus 120 dd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~ 155 (892)
T KOG2025|consen 120 DDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG 155 (892)
T ss_pred CHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc
Confidence 12335678899999999999999999999999873
No 86
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=46.22 E-value=62 Score=40.94 Aligned_cols=126 Identities=17% Similarity=0.176 Sum_probs=88.3
Q ss_pred HHHHHHHHHhhhcCCcccchhHHHHHHHHh---hhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccch-hhh
Q 001144 1007 VQTICLILTKSINRQQRFQREAAAAALSEF---VRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIH 1082 (1141)
Q Consensus 1007 ~~~i~~~L~~~L~s~~~~qRi~a~af~sEL---L~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~-kv~ 1082 (1141)
...++-.+.|.++-++-.+ +.+|+.|= |-.......+.+.++..|...++|++..+...+|+++.+.+.- ++.
T Consensus 347 ~~~~~p~l~pi~~~~~~~~---~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~ 423 (700)
T KOG2137|consen 347 GPKMLPALKPIYSASDPKQ---ALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVP 423 (700)
T ss_pred hhhhhHHHHHHhccCCccc---chhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHH
Confidence 4455555566665533333 45566653 3333334456777999999999999999999999999998765 444
Q ss_pred hhHHHHHHHHHhhccCC-ChhHHHHHHHHHHHHhccCCCCCccchHHHHHHHhc
Q 001144 1083 QYATQVLSVILALLDDL-DESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLR 1135 (1141)
Q Consensus 1083 ~~~~~lL~all~~l~d~-~~~vvleam~~L~~lL~~l~~~~~~~~l~~ia~rlR 1135 (1141)
--...+|+.+....... +-.|..-++-++..+++.+|...+-..+.-|...++
T Consensus 424 ~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~ 477 (700)
T KOG2137|consen 424 FVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIK 477 (700)
T ss_pred HHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Confidence 44466788877774432 337888888999999999998887777777666554
No 87
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=46.10 E-value=1.7e+02 Score=36.98 Aligned_cols=165 Identities=13% Similarity=0.097 Sum_probs=81.9
Q ss_pred hhhHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhcccCCccchhhHHHHHHHHhhcCHHHHHHHHHHHHhhhccccchhh
Q 001144 295 DDHSALLHRCLGILLQKVADRNYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRL 374 (1141)
Q Consensus 295 ~~eK~fL~k~lG~~L~~~~~~~~V~~~L~~ll~~~~~~~~~ereG~A~~~G~~A~~Hld~vL~~Le~~~k~~~~~~~~~~ 374 (1141)
...+..++-++ ..+....-|. .+..++...+. .+.+.......++...+.--..+++.+.++.+.. ..
T Consensus 378 ~~~r~~~lDal----~~aGT~~av~-~i~~~I~~~~~-~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~---~~--- 445 (618)
T PF01347_consen 378 EQARKIFLDAL----PQAGTNPAVK-FIKDLIKSKKL-TDDEAAQLLASLPFHVRRPTEELLKELFELAKSP---KV--- 445 (618)
T ss_dssp HHHHHHHHHHH----HHH-SHHHHH-HHHHHHHTT-S--HHHHHHHHHHHHHT-----HHHHHHHHHHHT-H---HH---
T ss_pred HHHHHHHHHHH----HHcCCHHHHH-HHHHHHHcCCC-CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCc---cc---
Confidence 34444444433 3444444454 55555553322 2333445555556666566677778787777631 10
Q ss_pred hccccCcccccchHhHHHHHHHHHHHHHhcCCchh---------HHHHHHHHHHHHHHHHHh---hccchhHHHHHHHHH
Q 001144 375 LSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTV---------IEARIDALVGTNMLSRLL---HVRHHTAKQAVITAI 442 (1141)
Q Consensus 375 ~~~~k~~~~~~e~~~~ks~l~l~YG~va~~ap~~~---------l~~rve~~I~~~i~~~~~---~~kd~~lK~s~l~si 442 (1141)
.....++.+.+++||.++.++-... ...-. ..+++++..++. ..+|..-++.+|+|+
T Consensus 446 ----------~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~LkaL 514 (618)
T PF01347_consen 446 ----------KNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCII-EKYVPYLEQELKEAVSRGDEEEKIVYLKAL 514 (618)
T ss_dssp ----------HT-HHHHHHHHHHHHHHHHHHHTT-----------SS---GGGTHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ----------cCChhHHHHHHHHHHHHhCceeecccccccccccchhhH-HHHHHHHHHHHHHHhhccCHHHHHHHHHHh
Confidence 0123589999999999976543331 10111 122334444443 335667888888887
Q ss_pred HHHHHHHhhhhhcCCCcCCCCHHHHHHHHHHHhccCCCCCcCCchHHHHHHHHHHHHHhhhhccc
Q 001144 443 DLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTV 507 (1141)
Q Consensus 443 ~~i~~al~~~~~~~~~f~f~~k~eLl~~l~~~i~~Ep~~~L~s~~~~ll~~r~~a~~ait~L~~L 507 (1141)
.-+|. + +.+..++.+++.+. .. | ..+|..|+.|+..+...
T Consensus 515 gN~g~---~--------------~~i~~l~~~i~~~~--~~--~----~~~R~~Ai~Alr~~~~~ 554 (618)
T PF01347_consen 515 GNLGH---P--------------ESIPVLLPYIEGKE--EV--P----HFIRVAAIQALRRLAKH 554 (618)
T ss_dssp HHHT----G--------------GGHHHHHTTSTTSS---S-------HHHHHHHHHTTTTGGGT
T ss_pred hccCC---c--------------hhhHHHHhHhhhcc--cc--c----hHHHHHHHHHHHHHhhc
Confidence 66552 1 23344555665552 11 1 12888888887766433
No 88
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=45.72 E-value=35 Score=33.14 Aligned_cols=66 Identities=24% Similarity=0.342 Sum_probs=50.9
Q ss_pred hhhhhhcccccchhHHHHHHHhhhcCCCchhhhc---chHHHHHHHHH----hh-hhccHHHHHHHHHHHHHHh
Q 001144 2 FLLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHS---KRPLLLEAVKS----LL-DEQNLAVQKAISELIVVMA 67 (1141)
Q Consensus 2 Fll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~~---k~~~i~~~vk~----~l-~d~~~kVr~al~~~I~ama 67 (1141)
++..||+++|.+....||.+|-+++...++.... ++.+....++. .. .+.+..||..+.++|.+-+
T Consensus 41 ~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 41 AIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 5778999999999999999999999988765432 33455565552 22 3678999999999987654
No 89
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=42.71 E-value=2.3e+02 Score=28.93 Aligned_cols=95 Identities=9% Similarity=0.050 Sum_probs=56.6
Q ss_pred ChhHHHHHHHHHHhhCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHh--HHHHHHHHHhhhcC
Q 001144 720 PSEVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVS--RTTQSLLSAAVHIT 797 (1141)
Q Consensus 720 ~~~~~~~i~~~~~k~L~~~el~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~--eIv~~i~~~L~~i~ 797 (1141)
|-..+-.+|..+... +..=.+.+..+...|...+.+...-|-.+|.++++..|..+. .+|+ +.++.+..-+..-.
T Consensus 17 dw~~il~icD~I~~~--~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh-~evask~Fl~eL~kl~~~~~ 93 (144)
T cd03568 17 NWGLILDVCDKVKSD--ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFH-QEVASRDFTQELKKLINDRV 93 (144)
T ss_pred CHHHHHHHHHHHhcC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHH-HHHhhHHHHHHHHHHhcccC
Confidence 333334455555332 223334555666777777888888899999999999999884 3354 23333322222225
Q ss_pred cHHHHHHHHHHHHHhhhccc
Q 001144 798 DKHLRLETLGAISCLAENTN 817 (1141)
Q Consensus 798 ~~~~r~~~l~ai~lLa~~h~ 817 (1141)
.+.+++.++..|...+....
T Consensus 94 ~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 94 HPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred CHHHHHHHHHHHHHHHHHhC
Confidence 56677766666666665544
No 90
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.54 E-value=9e+02 Score=31.54 Aligned_cols=187 Identities=12% Similarity=0.018 Sum_probs=111.2
Q ss_pred HhHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhcccchhhHHHHhhhhcccccccccccccCCCChhhHHHHhhcCcchH
Q 001144 782 VSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLS 861 (1141)
Q Consensus 782 V~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~h~~~Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~aLa~~~~l~ 861 (1141)
++|.|..++.++.+.+-..-|+.+.+++-.+++.|-.+|.. .=| =|+-...+.=..|+...
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga-~Gm------------------k~li~vL~~D~~D~E~i 80 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGA-QGM------------------KPLIQVLQRDYMDPEII 80 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHH-ccc------------------HHHHHHHhhccCCHHHH
Confidence 88999999999999999999999999999999999999986 322 12222333335678888
Q ss_pred HHHHHHHHHHHccCCCccCCCCCCCCCCCCCCcccchhhHHHHHHHHHHHHhcCCcchHHHHHHhhhHHHHHHHHHHhhh
Q 001144 862 FLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSC 941 (1141)
Q Consensus 862 ~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~plaAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~ 941 (1141)
.-+|+.++-.....-..+... +++ .+. ----=+.|+|-.. + =+.++|++.=--
T Consensus 81 k~~LdTl~il~~~dd~~~v~d-------ds~---qsd----d~g~~iae~fik~------------q-d~I~lll~~~e~ 133 (970)
T KOG0946|consen 81 KYALDTLLILTSHDDSPEVMD-------DST---QSD----DLGLWIAEQFIKN------------Q-DNITLLLQSLEE 133 (970)
T ss_pred HHHHHHHHHHHhcCcchhhcc-------cch---hhh----HHHHHHHHHHHcC------------c-hhHHHHHHHHHh
Confidence 889999988877543222110 011 000 0011122222222 0 112222222111
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHHhhCChhHHHHHHhcCCCCchhhhHhhHHHHHHHHhhcCChhHHHHHHHHHhhhcCC
Q 001144 942 HGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQ 1021 (1141)
Q Consensus 942 ~~~~~~~~~~P~~~aleAlk~lL~~~g~~~~~~~le~~g~W~~~~~~~~GV~lLAram~~~~~~~~~~i~~~L~~~L~s~ 1021 (1141)
.+ ..=-+++++=+-+++.|-|-+-- ..+- .++.||.-|..-+...+.+.--..+.+|.-..++.
T Consensus 134 ~D------F~VR~~aIqLlsalls~r~~e~q-~~ll---------~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n 197 (970)
T KOG0946|consen 134 FD------FHVRLYAIQLLSALLSCRPTELQ-DALL---------VSPMGISKLMDLLRDSREPIRNEAILLLSELVKDN 197 (970)
T ss_pred hc------hhhhhHHHHHHHHHHhcCCHHHH-HHHH---------HCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccC
Confidence 11 11125777878888777665422 2222 57777777766666666554445555666666667
Q ss_pred cccchhHHH
Q 001144 1022 QRFQREAAA 1030 (1141)
Q Consensus 1022 ~~~qRi~a~ 1030 (1141)
...|+++|.
T Consensus 198 ~~IQKlVAF 206 (970)
T KOG0946|consen 198 SSIQKLVAF 206 (970)
T ss_pred chHHHHHHH
Confidence 777888877
No 91
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=42.16 E-value=1.3e+03 Score=33.35 Aligned_cols=325 Identities=13% Similarity=0.093 Sum_probs=153.9
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCHHHHHHHHHHHhccCCCCCcCCchHHHHHHHHHHHHHhhhhcccCCC
Q 001144 431 HHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPK 510 (1141)
Q Consensus 431 d~~lK~s~l~si~~i~~al~~~~~~~~~f~f~~k~eLl~~l~~~i~~Ep~~~L~s~~~~ll~~r~~a~~ait~L~~L~P~ 510 (1141)
+..+-.-.+.++.+++.-.-...+ ..+|.| -.++++=+..+|+... + . .+|.+++.++..++.-+-.
T Consensus 1150 n~~va~fAidsLrQLs~kfle~eE-L~~f~F--QkefLkPfe~im~~s~--~-----~---eVrE~ILeCv~qmI~s~~~ 1216 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKFLEREE-LANYNF--QNEFMKPFVIVMRKSN--A-----V---EIRELIIRCVSQMVLSRVN 1216 (1780)
T ss_pred chhHHHHHHHHHHHHHHHhcchhh-hhchhH--HHHHHHHHHHHHHhcC--c-----h---HHHHHHHHHHHHHHHHHHh
Confidence 444555566677777776655333 336666 3578888888887443 1 1 2899999999988642110
Q ss_pred CChhHHHHHHHHhhhccccCCCCC-C-chHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHhhhhhhcCChhHHHhhH
Q 001144 511 LTIETRNHVMKATLGFFALPNDPI-D-VVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRS 588 (1141)
Q Consensus 511 l~~e~~~~ll~~clsv~~lP~~~~-~-~~~~l~~~l~~ll~~ll~~~~~~~~~~~~~Lq~il~~L~pWl~S~k~~EReRA 588 (1141)
....-+ ++.|++|+.+..+. + -++.-|+.+......-+..-+. ...+.+.++++-+...-+...+ ...+
T Consensus 1217 -nIkSGW---ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~---~~~~~F~DlV~cL~~Fa~q~~~--~nIS 1287 (1780)
T PLN03076 1217 -NVKSGW---KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITE---TETTTFTDCVNCLIAFTNSRFN--KDIS 1287 (1780)
T ss_pred -hhhcCc---HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccc---cchhHHHHHHHHHHHHHhCcCc--cccc
Confidence 000011 12345555543221 1 1233344444333332221111 0146888888888888765544 4455
Q ss_pred HHHHHHHH---HHHHHhccccccccCCCCCcccccchhh--ccccCCCCCCCc-cC-CCchh--hhhhhhHHHHhhcCcc
Q 001144 589 CLAVYEML---LKFRTLCVIGYCALGCHGSCTHIKQIDR--AVLGNFSNLPSA-YV-LPSRE--ALCLGNRVIMYLPRCA 659 (1141)
Q Consensus 589 ~~~~~~lL---~~~~~~~~~~~c~~~~~~~~~~~~~l~~--~~~~~f~~~p~~-~~-~p~~~--~~~lG~lvg~l~p~C~ 659 (1141)
+.++..+- .++.+.. +++ +..-..... .......+.+.. .. .+..+ ..++=-|.| |.=.|.
T Consensus 1288 L~AI~lL~~~~~~La~~~------~~~---~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~-Ls~l~~ 1357 (1780)
T PLN03076 1288 LNAIAFLRFCATKLAEGD------LGS---SSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAG-LSELSF 1357 (1780)
T ss_pred HHHHHHHHHHHHHHHhcc------ccc---cccccccccccccccccccccccccccccchhHHHHHHHHHHH-HHHHhc
Confidence 55543322 2222210 000 000000000 000000000000 00 00000 122322333 333588
Q ss_pred CCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCChhhhhhhhcc-hhHHHHHhhcC-----C----------CCC--C-
Q 001144 660 DTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSS-LEDVIAILRSD-----A----------SID--P- 720 (1141)
Q Consensus 660 D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~-l~~l~~~~~~~-----~----------~~~--~- 720 (1141)
|+..+||..|++.+.-.+ . .|.+. - +.+-|..-+.. +=++.+..+.. . ..+ +
T Consensus 1358 D~RlEVR~~ALqtLF~iL---~---~yG~~-F--s~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 1428 (1780)
T PLN03076 1358 DPRPEIRKSALQVLFDTL---R---NHGHL-F--SLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQ 1428 (1780)
T ss_pred CCcHHHHHHHHHHHHHHH---H---Hhhcc-C--CHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhh
Confidence 999999999888765554 3 23221 1 10111111110 11111111110 0 000 0
Q ss_pred --------hhHHHHHHHHHHhhCCh--HHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHhHHHHHHH
Q 001144 721 --------SEVFNRIVSSVCILLTK--DELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLL 790 (1141)
Q Consensus 721 --------~~~~~~i~~~~~k~L~~--~el~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~ 790 (1141)
...+..++..|.+|+.. ..|.+|+.-+...++..+..-+..++.-|..++..-|.++.+++-.+|++.+.
T Consensus 1429 ~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~ 1508 (1780)
T PLN03076 1429 DAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLK 1508 (1780)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 01113344445555532 36666776677777777778888888889999999999997765666666555
Q ss_pred HHhhhc
Q 001144 791 SAAVHI 796 (1141)
Q Consensus 791 ~~L~~i 796 (1141)
.-....
T Consensus 1509 ~lf~~T 1514 (1780)
T PLN03076 1509 EAANAT 1514 (1780)
T ss_pred HHHHHh
Confidence 544443
No 92
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=41.42 E-value=3.5e+02 Score=26.40 Aligned_cols=73 Identities=14% Similarity=0.130 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhcc
Q 001144 740 LVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENT 816 (1141)
Q Consensus 740 l~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~h 816 (1141)
+..++-.+.+||........++|+-|+...+-.+. .|.++=+..+++.|......... .+..+-++..|.+++
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~-~L~~~~l~~l~~~i~~~~~~~~~---~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKV-PLSDEVLNALMESILKNWTQETV---QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc-CCcHHHHHHHHHHHHhccccchh---HHHHHHHHHHHHHcc
Confidence 45566688899996667788999999999997764 35222144455555544443332 355566666777665
No 93
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=41.38 E-value=7.5e+02 Score=32.67 Aligned_cols=162 Identities=18% Similarity=0.206 Sum_probs=108.4
Q ss_pred hhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCChhhhhhhhcchhHHHHHhhcCCCCCChhHHH
Q 001144 646 CLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFN 725 (1141)
Q Consensus 646 ~lG~lvg~l~p~C~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~ 725 (1141)
+.|.+...+-.+=-|.|..+-..|++++..+. ..++ .++. .+ .... +..+++-.++ ...++..
T Consensus 292 ~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia---~~lr--~~~~-~~----~~~v---~p~lld~lke----kk~~l~d 354 (815)
T KOG1820|consen 292 YTGLLGILLKIRLKDANINVVMLAAQILELIA---KKLR--PLFR-KY----AKNV---FPSLLDRLKE----KKSELRD 354 (815)
T ss_pred cchHHHHHHHHhccCcchhHHHHHHHHHHHHH---Hhcc--hhhH-HH----HHhh---cchHHHHhhh----ccHHHHH
Confidence 67777778888889999999999999999875 3232 1110 00 0011 1111110011 1123333
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhh-HhHHHHHHHHHhhhcCcHHHHHH
Q 001144 726 RIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETD-VSRTTQSLLSAAVHITDKHLRLE 804 (1141)
Q Consensus 726 ~i~~~~~k~L~~~el~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~d-V~eIv~~i~~~L~~i~~~~~r~~ 804 (1141)
-+.+++-..+...-+.+..-..++++.+.+++--.....++...++.-|+..-+++ |-..+..++.+ -..+++.+|..
T Consensus 355 ~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~-~~D~~~~VR~A 433 (815)
T KOG1820|consen 355 ALLKALDAILNSTPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKH-INDTDKDVRKA 433 (815)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhh-ccCCcHHHHHH
Confidence 44455555555677778888899999999887777777788899988884332322 55555555544 34567899999
Q ss_pred HHHHHHHhhhcccchhhHHHHh
Q 001144 805 TLGAISCLAENTNSKIVFNEVL 826 (1141)
Q Consensus 805 ~l~ai~lLa~~h~~~Vv~~~LL 826 (1141)
++.++..+.+.|-++|+. .+|
T Consensus 434 a~e~~~~v~k~~Ge~~~~-k~L 454 (815)
T KOG1820|consen 434 ALEAVAAVMKVHGEEVFK-KLL 454 (815)
T ss_pred HHHHHHHHHHHhhHHHHH-HHH
Confidence 999999999999999996 999
No 94
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=41.05 E-value=1.5e+02 Score=36.80 Aligned_cols=131 Identities=14% Similarity=0.083 Sum_probs=88.8
Q ss_pred hhHhhHHHHHHHHhhcC-ChhHHHHHHHHHhhhcCCcccchhHHH--HHHHHhhhccCCccchHHHHHHHHhhhcCCCCc
Q 001144 987 KWINLIGDVAGCVSIKR-PKEVQTICLILTKSINRQQRFQREAAA--AALSEFVRYSGGFDSLLEQMVEALCRHVSDESP 1063 (1141)
Q Consensus 987 ~~~~GV~lLAram~~~~-~~~~~~i~~~L~~~L~s~~~~qRi~a~--af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~ 1063 (1141)
.|-.-...|-.-.-++. ..++-++++.+++.=+.+.-..|+... +||.-.+..-+....+++.++.++.+++..++-
T Consensus 26 Ghrk~~a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk 105 (885)
T COG5218 26 GHRKSLAELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDK 105 (885)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcch
Confidence 44444444433333332 235667777777777777778888764 344323333222256888899999999999999
Q ss_pred hhhhhhccccCCccch--hh-hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhcc
Q 001144 1064 TVRGLCLRGLVQIPSI--HI-HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKS 1117 (1141)
Q Consensus 1064 ~VR~lslrGLgnl~~~--kv-~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~ 1117 (1141)
+||.=|++=|+-+.-. .+ .-....++..+.+-+.|.+.-|..||+.+|++.=+.
T Consensus 106 ~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~ 162 (885)
T COG5218 106 KVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEM 162 (885)
T ss_pred hHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc
Confidence 9999888777644322 21 234567788899999999999999999999987643
No 95
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=40.67 E-value=1.9e+02 Score=34.83 Aligned_cols=100 Identities=21% Similarity=0.146 Sum_probs=58.6
Q ss_pred HHHHHhhcCChhHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccC
Q 001144 995 VAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLV 1074 (1141)
Q Consensus 995 LAram~~~~~~~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLg 1074 (1141)
.|+++..-.. +.....|.+.+++.+..-|-.++..+.. ...+ ....|...++|+++.||.-++|.||
T Consensus 106 aa~ALg~i~~---~~a~~~L~~~L~~~~p~vR~aal~al~~----r~~~------~~~~L~~~L~d~d~~Vra~A~raLG 172 (410)
T TIGR02270 106 IQAALGWLGG---RQAEPWLEPLLAASEPPGRAIGLAALGA----HRHD------PGPALEAALTHEDALVRAAALRALG 172 (410)
T ss_pred HHHHHhcCCc---hHHHHHHHHHhcCCChHHHHHHHHHHHh----hccC------hHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3445544333 3344556677776665555444433333 2111 2234555667999999999999999
Q ss_pred CccchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHH
Q 001144 1075 QIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTI 1114 (1141)
Q Consensus 1075 nl~~~kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~l 1114 (1141)
.+.... . ++.+...+.|.|+.|--.|+.+|+.+
T Consensus 173 ~l~~~~---a----~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 173 ELPRRL---S----ESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred hhcccc---c----hHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 876441 1 22233446777888888888777554
No 96
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=40.34 E-value=1.2e+03 Score=32.15 Aligned_cols=146 Identities=16% Similarity=0.140 Sum_probs=84.6
Q ss_pred HhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCChhhhhhhhcchhHHHHHhhcCCCCCChhHHHHHHHHHH
Q 001144 653 MYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFNRIVSSVC 732 (1141)
Q Consensus 653 ~l~p~C~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~ 732 (1141)
+..-+|+|+.+-||+.=+|.|.-|...--.. + +. +-.. +.+ +-.+.+. .-.--..||+-+--++
T Consensus 582 ~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~----k-sN----D~iL---shL---iTfLNDk-Dw~LR~aFfdsI~gvs 645 (1431)
T KOG1240|consen 582 MVSSLLSDSPPIVKRALLESIIPLCVFFGKE----K-SN----DVIL---SHL---ITFLNDK-DWRLRGAFFDSIVGVS 645 (1431)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHhhhc----c-cc----cchH---HHH---HHHhcCc-cHHHHHHHHhhccceE
Confidence 4566899999999999999977776433311 1 11 1111 111 1111111 0000122333332233
Q ss_pred hhCChHHHHHHHH-HHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhcCcHHHHHHHHHHHHH
Q 001144 733 ILLTKDELVATLH-SCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISC 811 (1141)
Q Consensus 733 k~L~~~el~~li~-tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i~~~~~r~~~l~ai~l 811 (1141)
-++...-+-+.++ -+..||.|........|-.-+..++|..--+= .. |-+|++..+--|++=. .=+|++++-.|..
T Consensus 646 i~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K-~~-v~~i~~~v~PlL~hPN-~WIR~~~~~iI~~ 722 (1431)
T KOG1240|consen 646 IFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRK-PA-VKDILQDVLPLLCHPN-LWIRRAVLGIIAA 722 (1431)
T ss_pred EEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccch-HH-HHHHHHhhhhheeCch-HHHHHHHHHHHHH
Confidence 4444443344454 45689999999998888889999998753332 23 7777777766555522 3567888888888
Q ss_pred hhhccc
Q 001144 812 LAENTN 817 (1141)
Q Consensus 812 La~~h~ 817 (1141)
-+++--
T Consensus 723 ~~~~ls 728 (1431)
T KOG1240|consen 723 IARQLS 728 (1431)
T ss_pred HHhhhh
Confidence 776643
No 97
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=38.69 E-value=1.9e+02 Score=35.16 Aligned_cols=148 Identities=16% Similarity=0.257 Sum_probs=101.0
Q ss_pred CchhhhHhhHHHHHHHHhhcCC----hhHHHHHHHHHhhhcC-CcccchhHHHHHHHHhhhccC-CccchHHHHHHHHhh
Q 001144 983 NDKEKWINLIGDVAGCVSIKRP----KEVQTICLILTKSINR-QQRFQREAAAAALSEFVRYSG-GFDSLLEQMVEALCR 1056 (1141)
Q Consensus 983 ~~~~~~~~GV~lLAram~~~~~----~~~~~i~~~L~~~L~s-~~~~qRi~a~af~sELL~~~~-~~~~l~~~~l~~L~~ 1056 (1141)
+..+..-+|...|-..++.... .+...|+..++-.|.. ..+..|..|.-++.|.+.+.. ....-.+-.+.-+.+
T Consensus 299 e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le 378 (516)
T KOG2956|consen 299 ERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE 378 (516)
T ss_pred cchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH
Confidence 3445566777777777776532 3488889999988866 667899999999999999876 222222334444555
Q ss_pred hcCCCC-chhhhh---hccccC---------Cccc--------------------------hhhhhhHHHHHHHHHhhcc
Q 001144 1057 HVSDES-PTVRGL---CLRGLV---------QIPS--------------------------IHIHQYATQVLSVILALLD 1097 (1141)
Q Consensus 1057 ~l~D~~-~~VR~l---slrGLg---------nl~~--------------------------~kv~~~~~~lL~all~~l~ 1097 (1141)
..+|+. .++|.. |++-+. |+.. .......+.+.|+++.+.+
T Consensus 379 aa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~ 458 (516)
T KOG2956|consen 379 AAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYD 458 (516)
T ss_pred HHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhc
Confidence 566665 455521 122111 1110 0224455778899999999
Q ss_pred CCChhHHHHHHHHHHHHhccCCCCCccchHHHH
Q 001144 1098 DLDESVQLTAVSCLLTILKSSSKDAVEPILLNL 1130 (1141)
Q Consensus 1098 d~~~~vvleam~~L~~lL~~l~~~~~~~~l~~i 1130 (1141)
.....|.-+|+-+|--+...++.+...|.+-++
T Consensus 459 S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 459 STSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred CchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 888999999999999999999988888877655
No 98
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=38.36 E-value=58 Score=32.42 Aligned_cols=67 Identities=19% Similarity=0.343 Sum_probs=44.3
Q ss_pred ChhhhhhcccccchhHHHHHHHhhhcCCCchhh---hcchHHHHHHHHHhh--------hhccHHHHHHHHHHHHHHh
Q 001144 1 MFLLNKCRLKEEHLSVGALYVLKHLLPRSSEAW---HSKRPLLLEAVKSLL--------DEQNLAVQKAISELIVVMA 67 (1141)
Q Consensus 1 ~Fll~~l~~~~E~~Rvg~L~vlrhlins~~~~~---~~k~~~i~~~vk~~l--------~d~~~kVr~al~~~I~ama 67 (1141)
+||+.+|+.++-.++.++|.||+|++....+.. --+...++...+.-- .+++-+||.+-=+++.++-
T Consensus 41 d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 41 EYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 489999999999999999999999998644432 223344554443332 1345667766666655543
No 99
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.33 E-value=1.5e+02 Score=37.93 Aligned_cols=90 Identities=19% Similarity=0.264 Sum_probs=56.5
Q ss_pred hhhhHhhHHHHHHHHhhcCChhHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCch
Q 001144 985 KEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPT 1064 (1141)
Q Consensus 985 ~~~~~~GV~lLAram~~~~~~~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~ 1064 (1141)
+++..+||..+-+.|.. +..+..+|.-+++.++..+-.++...-. -+.+.-........-.++.+..-..||||+
T Consensus 27 ~~kr~~a~kkvIa~Mt~--G~DvSslF~dvvk~~~T~dlelKKlvyL---Yl~nYa~~~P~~a~~avnt~~kD~~d~np~ 101 (734)
T KOG1061|consen 27 KEKRKDAVKKVIAYMTV--GKDVSSLFPDVVKCMQTRDLELKKLVYL---YLMNYAKGKPDLAILAVNTFLKDCEDPNPL 101 (734)
T ss_pred hhhHHHHHHHHHhcCcc--CcchHhhhHHHHhhcccCCchHHHHHHH---HHHHhhccCchHHHhhhhhhhccCCCCCHH
Confidence 35677777766666654 3567777777777776655444433222 222222112122233778888888999999
Q ss_pred hhhhhccccCCccch
Q 001144 1065 VRGLCLRGLVQIPSI 1079 (1141)
Q Consensus 1065 VR~lslrGLgnl~~~ 1079 (1141)
+|.+++|-+|.+...
T Consensus 102 iR~lAlrtm~~l~v~ 116 (734)
T KOG1061|consen 102 IRALALRTMGCLRVD 116 (734)
T ss_pred HHHHHhhceeeEeeh
Confidence 999999998877654
No 100
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=37.46 E-value=2.5e+02 Score=36.50 Aligned_cols=164 Identities=12% Similarity=0.008 Sum_probs=100.0
Q ss_pred chHHHHHHhhhHHHHHHHHHHhhhccCCCCCCCChhHHHHHHHHHHHHhhCChhHHHHHHhcCCCCchhhhHhhHHHHHH
Q 001144 918 VGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILARDGEQNDKEKWINLIGDVAG 997 (1141)
Q Consensus 918 ~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~lL~~~g~~~~~~~le~~g~W~~~~~~~~GV~lLAr 997 (1141)
..+.++.+++|++...+-. +...+.+..++.. . .|+.-..-.+|++.-..
T Consensus 494 Rvr~ail~~ip~la~q~~~-----------------~~~~~~~~~l~~~-~------------l~d~v~~Ir~~aa~~l~ 543 (759)
T KOG0211|consen 494 RVRLAILEYIPQLALQLGV-----------------EFFDEKLAELLRT-W------------LPDHVYSIREAAARNLP 543 (759)
T ss_pred HHHHHHHHHHHHHHHhhhh-----------------HHhhHHHHHHHHh-h------------hhhhHHHHHHHHHHHhH
Confidence 7889999999998885521 1122222222221 1 12222344455555555
Q ss_pred HHhhcCC--hhHHHHHHHHHhhhcCCcccchhHHH---HHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccc
Q 001144 998 CVSIKRP--KEVQTICLILTKSINRQQRFQREAAA---AALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRG 1072 (1141)
Q Consensus 998 am~~~~~--~~~~~i~~~L~~~L~s~~~~qRi~a~---af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrG 1072 (1141)
.++...+ |....+...++-....+...+|.+.. .+|+|.+..+ ..-+.++-.+.....|+.|.||.=+.+-
T Consensus 544 ~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e----i~~~~Llp~~~~l~~D~vanVR~nvak~ 619 (759)
T KOG0211|consen 544 ALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE----ITCEDLLPVFLDLVKDPVANVRINVAKH 619 (759)
T ss_pred HHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH----HHHHHHhHHHHHhccCCchhhhhhHHHH
Confidence 5555544 77777777777777777677777654 4455544433 3556688888999999999999766665
Q ss_pred cCCccch-hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHh
Q 001144 1073 LVQIPSI-HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTIL 1115 (1141)
Q Consensus 1073 Lgnl~~~-kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL 1115 (1141)
|--+... .......+++++......|+|-++-..|....+-+.
T Consensus 620 L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 620 LPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence 5544332 223344556666666666777777777766665543
No 101
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=37.30 E-value=41 Score=26.88 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=20.8
Q ss_pred HHHHHHHhhhcCCCCchhhhhhcc
Q 001144 1048 EQMVEALCRHVSDESPTVRGLCLR 1071 (1141)
Q Consensus 1048 ~~~l~~L~~~l~D~~~~VR~lslr 1071 (1141)
..+...+.+++.|++|.||..++.
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ 40 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVD 40 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHH
Confidence 358889999999999999988764
No 102
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=37.24 E-value=8.6e+02 Score=29.77 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhhhhhcCCCcCCCCHHHHHHHHHHHhccCCCCCcCCchHHHHHHHHHHHHHhhhhcccCCCCChhHHHH
Q 001144 439 ITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNH 518 (1141)
Q Consensus 439 l~si~~i~~al~~~~~~~~~f~f~~k~eLl~~l~~~i~~Ep~~~L~s~~~~ll~~r~~a~~ait~L~~L~P~l~~e~~~~ 518 (1141)
++++..++.+|+ .|....-.++-....+++..+.+. ..|+.++..+..+++-.=.-+.-+|..
T Consensus 8 ~~a~~~l~~~i~-------~~~~~~i~~iW~~~~DLi~~~~p~----------e~R~~~~~ll~~~i~~~~~~~~~~R~~ 70 (464)
T PF11864_consen 8 IKAAEELCESIQ-------KYPLSSIEEIWYAAKDLIDPNQPS----------EARRAALELLIACIKRQDSSSGLMRAE 70 (464)
T ss_pred HHHHHHHHHHHH-------hCCchHHHHHHHHHhhhcCCCCCH----------HHHHHHHHHHHHHHHccccccHHHHHH
Confidence 456667777764 366777888888888888655422 189999999999987644434455555
Q ss_pred HHHHhhhccccCCCCCCchHHHHHHHHHHHHHHHhhcCCCCCCCHHH-HHHHHHhhhhhhc
Q 001144 519 VMKATLGFFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQ-LLHILRQIDQYVS 578 (1141)
Q Consensus 519 ll~~clsv~~lP~~~~~~~~~l~~~l~~ll~~ll~~~~~~~~~~~~~-Lq~il~~L~pWl~ 578 (1141)
+++.. .-|+. .++ ++...++|.+|= ++|.| .++ -.++...|..|+.
T Consensus 71 fF~~I----~~~~~-~~d----~~~~l~aL~~LT-~~Grd----i~~~~~~i~~~L~~wl~ 117 (464)
T PF11864_consen 71 FFRDI----SDPSN-DDD----FDLRLEALIALT-DNGRD----IDFFEYEIGPFLLSWLE 117 (464)
T ss_pred HHHHH----hcCCC-chh----HHHHHHHHHHHH-cCCcC----chhcccchHHHHHHHHH
Confidence 55443 32222 112 334444444433 34432 334 4457778888884
No 103
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.51 E-value=1.1e+03 Score=30.58 Aligned_cols=32 Identities=13% Similarity=0.110 Sum_probs=23.2
Q ss_pred hhhhHHHHhhcCccCCChhHHHHHHHHHHHHH
Q 001144 646 CLGNRVIMYLPRCADTDSEVRKISAQILDQLF 677 (1141)
Q Consensus 646 ~lG~lvg~l~p~C~D~~~~ir~~A~~~i~~Ll 677 (1141)
.+-.-+..|+-.-++.+..||-.|.|.+.+|.
T Consensus 326 ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ 357 (938)
T KOG1077|consen 326 LLSRAVNQLGQFLSHRETNIRYLALESMCKLA 357 (938)
T ss_pred HHHHHHHHHHHHhhcccccchhhhHHHHHHHH
Confidence 34444444444556889999999999998885
No 104
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=36.47 E-value=3.4e+02 Score=27.34 Aligned_cols=95 Identities=11% Similarity=0.041 Sum_probs=61.9
Q ss_pred CChhHHHHHHHHHHhhCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHh--HHHHHHHHHhhhc
Q 001144 719 DPSEVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVS--RTTQSLLSAAVHI 796 (1141)
Q Consensus 719 ~~~~~~~~i~~~~~k~L~~~el~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~--eIv~~i~~~L~~i 796 (1141)
+|-..+..||..+... +..-.+.+..+...|...++....-|-.+|..+++..|..+..+ |+ +.++.+..-+..-
T Consensus 21 ~Dw~~~l~icD~i~~~--~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~e-v~~~~fl~~l~~l~~~~ 97 (140)
T PF00790_consen 21 PDWSLILEICDLINSS--PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHRE-VASKEFLDELVKLIKSK 97 (140)
T ss_dssp --HHHHHHHHHHHHTS--TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHH-HTSHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHH-HhHHHHHHHHHHHHccC
Confidence 3444444566665544 33334555666677777778888889999999999999988444 53 4555555544433
Q ss_pred Cc-HH--HHHHHHHHHHHhhhcc
Q 001144 797 TD-KH--LRLETLGAISCLAENT 816 (1141)
Q Consensus 797 ~~-~~--~r~~~l~ai~lLa~~h 816 (1141)
.. +. +|+.++..|...+..+
T Consensus 98 ~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 98 KTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp TTHHHSHHHHHHHHHHHHHHHHT
T ss_pred CCCchhHHHHHHHHHHHHHHHHH
Confidence 33 33 8888888888777665
No 105
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.46 E-value=1e+03 Score=30.47 Aligned_cols=322 Identities=16% Similarity=0.179 Sum_probs=180.9
Q ss_pred hhHHHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhh-------cccchhhHHHHhhhh
Q 001144 757 QSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAE-------NTNSKIVFNEVLATA 829 (1141)
Q Consensus 757 ~~~~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~-------~h~~~Vv~~~LL~~~ 829 (1141)
.|+-||-.+|..++.. ++ .+.++--|-.+|.+ .+=-+|.+..-|+-..|. .|..+.|. .|+.-+
T Consensus 373 kCSAAaLDVLanvf~~---el----L~~l~PlLk~~L~~-~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip-~l~~~L 443 (885)
T KOG2023|consen 373 KCSAAALDVLANVFGD---EL----LPILLPLLKEHLSS-EEWKVREAGVLALGAIAEGCMQGFVPHLPELIP-FLLSLL 443 (885)
T ss_pred hccHHHHHHHHHhhHH---HH----HHHHHHHHHHHcCc-chhhhhhhhHHHHHHHHHHHhhhcccchHHHHH-HHHHHh
Confidence 4666777777777653 34 55566666666666 334566666666666664 45566775 666222
Q ss_pred cccccccccccccCCCChhh---HH--------HHhhcCcchHHHHHHHHHHHHccCCCccCCCCCCCCCCCCCCcccch
Q 001144 830 GKDIVTKDISRLRGGWPMQD---AF--------HAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDD 898 (1141)
Q Consensus 830 ~~~~~~~d~~~~~~plP~d~---~W--------~aLa~~~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~ 898 (1141)
. -..|+-| +| -.=-........+|+.|+.++-.+. |+
T Consensus 444 ~------------DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~N--------K~------------ 491 (885)
T KOG2023|consen 444 D------------DKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSN--------KK------------ 491 (885)
T ss_pred c------------cCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhccc--------HH------------
Confidence 1 1233333 44 2222222566778888887765211 11
Q ss_pred hhHHHHHHHHHHHHhcCCcchHHHHHHhhhHHHHHHHHHHhhhccCCCCCCCChhHHHHHHHHHHHHhhCCh-hHHHHHH
Q 001144 899 DILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDL-EMRKILA 977 (1141)
Q Consensus 899 ~~plaAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~lL~~~g~~-~~~~~le 977 (1141)
+--||..|+-. |.. +.....--++..++-.|..-++++-.-. .....+|..+|=..+|.. ..-++++
T Consensus 492 -VQEAAcsAfAt-leE---~A~~eLVp~l~~IL~~l~~af~kYQ~KN-------LlILYDAIgtlAdsvg~~Ln~~~Yiq 559 (885)
T KOG2023|consen 492 -VQEAACSAFAT-LEE---EAGEELVPYLEYILDQLVFAFGKYQKKN-------LLILYDAIGTLADSVGHALNKPAYIQ 559 (885)
T ss_pred -HHHHHHHHHHH-HHH---hccchhHHHHHHHHHHHHHHHHHHhhcc-------eehHHHHHHHHHHHHHHhcCcHHHHH
Confidence 01244444443 222 2223333477777777777777655432 246777777777766542 1223333
Q ss_pred h-----cCCCC-----chhh--hHhhHHHHHHHHhhcCChhHHHH-----------HHHHHhhhcC----Ccccch-hHH
Q 001144 978 R-----DGEQN-----DKEK--WINLIGDVAGCVSIKRPKEVQTI-----------CLILTKSINR----QQRFQR-EAA 1029 (1141)
Q Consensus 978 ~-----~g~W~-----~~~~--~~~GV~lLAram~~~~~~~~~~i-----------~~~L~~~L~s----~~~~qR-i~a 1029 (1141)
. -.-|+ +++- ..+-.+-+|.|+-..--|..+++ ++.+.+..+- .+|++. |+|
T Consensus 560 iLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~s 639 (885)
T KOG2023|consen 560 ILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVS 639 (885)
T ss_pred HhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEe
Confidence 3 12355 3333 34556666676655422222222 2233333221 223444 566
Q ss_pred HHHHHHhhhccC-CccchHHH--HHHHHhhhcCCCCchhhhhhccccCCccch---hhhhhHHHHHHHHHhhccCCChhH
Q 001144 1030 AAALSEFVRYSG-GFDSLLEQ--MVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESV 1103 (1141)
Q Consensus 1030 ~af~sELL~~~~-~~~~l~~~--~l~~L~~~l~D~~~~VR~lslrGLgnl~~~---kv~~~~~~lL~all~~l~d~~~~v 1103 (1141)
.=+++.|...-. +-..++-+ ++..|....+|+-|.||.-|.-=||.+..- +|+.+....++-+-..++...-++
T Consensus 640 LDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv 719 (885)
T KOG2023|consen 640 LDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISV 719 (885)
T ss_pred HHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchH
Confidence 678888877654 44445533 999999999999999999998888877654 566666666665555554333377
Q ss_pred HHHHHHHHHHHhccCCCC---CccchHHHHH
Q 001144 1104 QLTAVSCLLTILKSSSKD---AVEPILLNLS 1131 (1141)
Q Consensus 1104 vleam~~L~~lL~~l~~~---~~~~~l~~ia 1131 (1141)
.--|.-+++.+--+++.+ .+++++.++.
T Consensus 720 ~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~ 750 (885)
T KOG2023|consen 720 CNNAIWAIGEIALKMGLKMKQYVSPVLEDLI 750 (885)
T ss_pred HHHHHHHHHHHHHHhchhhhhHHHHHHHHHH
Confidence 777888888777776654 4555554443
No 106
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=36.16 E-value=1.3e+02 Score=41.03 Aligned_cols=130 Identities=15% Similarity=0.110 Sum_probs=86.7
Q ss_pred chhhhHhhHHHHHHHHhhcCChh---HHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCC
Q 001144 984 DKEKWINLIGDVAGCVSIKRPKE---VQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSD 1060 (1141)
Q Consensus 984 ~~~~~~~GV~lLAram~~~~~~~---~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D 1060 (1141)
..+.-.+.|+++++..+.+.++. .++++...+.-+......-|+.++=+....|-+.. ...+.....+.-+..|
T Consensus 272 ~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~---~~~~~~~~~~~l~~~~ 348 (1266)
T KOG1525|consen 272 QEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNP---SIAKASTILLALRERD 348 (1266)
T ss_pred hHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCc---hhhhHHHHHHHHHhhc
Confidence 56677888888888887776543 57888888888888888888888766666555432 1223333334444444
Q ss_pred CCchhhhhhccccCCccch--hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhcc
Q 001144 1061 ESPTVRGLCLRGLVQIPSI--HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKS 1117 (1141)
Q Consensus 1061 ~~~~VR~lslrGLgnl~~~--kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~ 1117 (1141)
.++.||.-..--.+-.+.. ++ .+.+.+|..+..-+.|+.-.|..+||.+|..+..+
T Consensus 349 ~D~~~rir~~v~i~~~~v~~~~l-~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 349 LDEDVRVRTQVVIVACDVMKFKL-VYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred CChhhhheeeEEEEEeehhHhhh-hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 4444444333333333333 33 24455899999999998889999999999999885
No 107
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.70 E-value=1.4e+02 Score=38.69 Aligned_cols=118 Identities=16% Similarity=0.169 Sum_probs=70.5
Q ss_pred HHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccC-CccchH-HHHHHHHhhhcCCCCchhhhhh-------ccccCCcc
Q 001144 1007 VQTICLILTKSINRQQRFQREAAAAALSEFVRYSG-GFDSLL-EQMVEALCRHVSDESPTVRGLC-------LRGLVQIP 1077 (1141)
Q Consensus 1007 ~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~-~~~~l~-~~~l~~L~~~l~D~~~~VR~ls-------lrGLgnl~ 1077 (1141)
.-.+.+......+.|...+|..+.|.+.++.+--. ....+. +.+-..+.--..|.++.||+.+ ++|+|..+
T Consensus 845 ~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dl 924 (982)
T KOG4653|consen 845 KAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDL 924 (982)
T ss_pred HHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhh
Confidence 44677777788888888999999999999988755 222233 4444445555569999999554 78888554
Q ss_pred chhhhhhHHHHHHHHHhhccC-CChhHHHHHHHHHHHHhccCCCCCcc
Q 001144 1078 SIHIHQYATQVLSVILALLDD-LDESVQLTAVSCLLTILKSSSKDAVE 1124 (1141)
Q Consensus 1078 ~~kv~~~~~~lL~all~~l~d-~~~~vvleam~~L~~lL~~l~~~~~~ 1124 (1141)
..=.+.|......-+.+-..+ .|+.+.+.|=.++-.+...++.....
T Consensus 925 Lpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~l~n~~~~ 972 (982)
T KOG4653|consen 925 LPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAALENDDDS 972 (982)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhcccC
Confidence 331222333333334443333 24444455555555555555444333
No 108
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.35 E-value=1.2e+03 Score=31.05 Aligned_cols=75 Identities=16% Similarity=0.193 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHhcc-CCCchhHHHHHHHHHHHHHhhc---cccchhhHhHHHHHHHHHhhhcCcHHHHHHHHHHHHHh
Q 001144 737 KDELVATLHSCTTAIC-DRTKQSAEGAIQAVVEFVTKRG---NELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCL 812 (1141)
Q Consensus 737 ~~el~~li~tll~~L~-d~~~~~~~~A~~~L~~~l~~~g---~~l~e~dV~eIv~~i~~~L~~i~~~~~r~~~l~ai~lL 812 (1141)
+..+...+.....+|. |.....---|+-.|.+++.... ..++.- ||.|++.+++=.+....+..-..+-+.|+-.
T Consensus 497 ~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~h-vp~~mq~lL~L~ne~End~Lt~vme~iV~~f 575 (1010)
T KOG1991|consen 497 PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAH-VPPIMQELLKLSNEVENDDLTNVMEKIVCKF 575 (1010)
T ss_pred hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhh-hhHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 4445566667778888 6666666778889999997654 347555 9999999998877777655444443333333
No 109
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=34.65 E-value=7.9e+02 Score=28.59 Aligned_cols=115 Identities=14% Similarity=0.206 Sum_probs=77.1
Q ss_pred HHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhc-------Cc---------HHHHHHHHH
Q 001144 744 LHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHI-------TD---------KHLRLETLG 807 (1141)
Q Consensus 744 i~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i-------~~---------~~~r~~~l~ 807 (1141)
+..+..+|.+....-..++-.+|..++...|+.+ .++|-+-.+.=...++.+ .+ +.+|...++
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~-a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGAL-AREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHH-HHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 3345566666666666788888888888777777 232433322222222111 11 289999999
Q ss_pred HHHHhhhcccchhhHHHHhhhhcccccccccccccCCCChhhHHHHhhcCc-chHHHHHHHHHHHHccC
Q 001144 808 AISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHA-VLSFLFLEHLISALNQT 875 (1141)
Q Consensus 808 ai~lLa~~h~~~Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~aLa~~~-~l~~~vL~~LL~~L~~~ 875 (1141)
=+..+-++.+..+.. .+|. ...+ +...|+-+..|+ .+...||+.|-+.+-..
T Consensus 137 F~Lsfl~~~~~~~~~-~lL~--------------~~~~-~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~ 189 (330)
T PF11707_consen 137 FWLSFLSSGDPELKR-DLLS--------------QKKL-MSALFKGLRKDPPETVILILETLKDKVLKD 189 (330)
T ss_pred HHHHHHccCCHHHHH-HHHH--------------cCch-HHHHHhcccCCCHHHHHHHHHHHHHHhccC
Confidence 999998888888886 8882 4445 667999999997 77888888888755543
No 110
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=34.39 E-value=2.8e+02 Score=26.83 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHh----h---ccchhHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCHHHHHHHHHHHhccCCCCCcCCc
Q 001144 414 IDALVGTNMLSRLL----H---VRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADS 486 (1141)
Q Consensus 414 ve~~I~~~i~~~~~----~---~kd~~lK~s~l~si~~i~~al~~~~~~~~~f~f~~k~eLl~~l~~~i~~Ep~~~L~s~ 486 (1141)
++.+++. |+.+|. + .++...|...++|+..+-+ +... +.=.-++++..++..-+..+.
T Consensus 5 L~~~~Lg-il~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~-~~~~------~i~~~~pQI~a~L~sal~~~~------- 69 (107)
T PF08064_consen 5 LQPHILG-ILTRFSDVLNDLRGKKPIPEKKRALRSIEELIK-LGGS------HISSARPQIMACLQSALEIPE------- 69 (107)
T ss_pred HHHHHHH-HHHHHHHHHhccccCCCHHHHHHHHHHHHHHHH-HhHH------HHHHHHHHHHHHHHHHhCChh-------
Confidence 3445553 444444 2 3566789999999998888 3332 122247788888887664331
Q ss_pred hHHHHHHHHHHHHHhhhhcccCCCCChhHHHHHHHHhh
Q 001144 487 SIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATL 524 (1141)
Q Consensus 487 ~~~ll~~r~~a~~ait~L~~L~P~l~~e~~~~ll~~cl 524 (1141)
+|..|+.+=..+++. +++++-.-+++..+
T Consensus 70 ------l~~~al~~W~~fi~~---L~~~~l~~ll~~~~ 98 (107)
T PF08064_consen 70 ------LREEALSCWNCFIKT---LDEEDLGPLLDQIF 98 (107)
T ss_pred ------hHHHHHHHHHHHHHH---CCHHHHHHHHHHHH
Confidence 667788888888775 56677777777766
No 111
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.42 E-value=1.1e+02 Score=38.67 Aligned_cols=105 Identities=24% Similarity=0.211 Sum_probs=70.0
Q ss_pred HHHHHHHHHhhhcCCcccchhHHHH-------HHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccch
Q 001144 1007 VQTICLILTKSINRQQRFQREAAAA-------ALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI 1079 (1141)
Q Consensus 1007 ~~~i~~~L~~~L~s~~~~qRi~a~a-------f~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~ 1079 (1141)
+.+=++++...|++++..=|.+|+- -|-|++...- ...++..+. ..-..|.+..||.-...||--|+.+
T Consensus 218 ~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i-~~~ll~kI~---d~~a~dt~s~VR~svf~gl~~~l~n 293 (1005)
T KOG1949|consen 218 IQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTI-LIDLLKKIT---DELAFDTSSDVRCSVFKGLPMILDN 293 (1005)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHH-HHHHHHHHH---HHhhhccchheehhHhcCcHHHHcC
Confidence 4445566677777777777777662 2333333221 111222222 2335688899999999999987766
Q ss_pred -hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHh
Q 001144 1080 -HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTIL 1115 (1141)
Q Consensus 1080 -kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL 1115 (1141)
.-+-...++|+|+--+|.|+.+.|.+.++..|.+|=
T Consensus 294 p~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 294 PLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred ccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 223455788999999999999999999999888774
No 112
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=33.21 E-value=1.3e+02 Score=32.05 Aligned_cols=73 Identities=15% Similarity=0.115 Sum_probs=59.6
Q ss_pred HHHHHHHHhccCCCchhHHHHHHHHHHHHHh-hccccchhhHhHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhcc
Q 001144 742 ATLHSCTTAICDRTKQSAEGAIQAVVEFVTK-RGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENT 816 (1141)
Q Consensus 742 ~li~tll~~L~d~~~~~~~~A~~~L~~~l~~-~g~~l~e~dV~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~h 816 (1141)
.++-.++|||....+.-.-.|......+++. .|.++-.- +|.++-.|..+|..- ++.+...+++++..|+..+
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPv-lPqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPV-LPQLIIPLKRALNTR-DPEVFCATLKALQQLVTSS 111 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhh
Confidence 4566788999998888778888888888888 56666555 899999999999864 5789999999999997763
No 113
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=32.79 E-value=4.1e+02 Score=27.06 Aligned_cols=75 Identities=12% Similarity=0.125 Sum_probs=51.8
Q ss_pred HHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHh--HHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhccc
Q 001144 742 ATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVS--RTTQSLLSAAVHITDKHLRLETLGAISCLAENTN 817 (1141)
Q Consensus 742 ~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~--eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~h~ 817 (1141)
+.+..+...|..++.+...-|-.+|..+++..|..+. .+|+ +.++.+..-+..-..+.+|+.++..|...+....
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh-~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFH-DEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHH-HHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 4455566667777788888899999999999999884 3354 3344444433335667788888887777776654
No 114
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=32.59 E-value=1.3e+02 Score=32.11 Aligned_cols=85 Identities=20% Similarity=0.280 Sum_probs=65.5
Q ss_pred HHHHHHHhhhcCCcccchhHHHHHHHHhhhc-cC-CccchHHHHHHHHhhhcCCCCchhhhhhccccCCcc---ch---h
Q 001144 1009 TICLILTKSINRQQRFQREAAAAALSEFVRY-SG-GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIP---SI---H 1080 (1141)
Q Consensus 1009 ~i~~~L~~~L~s~~~~qRi~a~af~sELL~~-~~-~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~---~~---k 1080 (1141)
..+-.+.-.|....+..|..|.-=+.|+|.. .. .-.+++.+++--|.+.++..|+.|...+|+.|-.+. .. .
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 3344455667788889999999999999999 33 344555779999999999999999999999998772 21 4
Q ss_pred hhhhHHHHHHHHH
Q 001144 1081 IHQYATQVLSVIL 1093 (1141)
Q Consensus 1081 v~~~~~~lL~all 1093 (1141)
...|..++|+.+-
T Consensus 118 LvPyyrqLLp~ln 130 (183)
T PF10274_consen 118 LVPYYRQLLPVLN 130 (183)
T ss_pred HHHHHHHHHHHHH
Confidence 4667788888776
No 115
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=32.29 E-value=1.4e+03 Score=30.70 Aligned_cols=93 Identities=16% Similarity=0.169 Sum_probs=54.5
Q ss_pred CChhHHHHHHHHHhhhcC-CcccchhHHHHHHHHhhhccC--CccchHHHH-HHHHhhhcCCCCchhhhhhccccCCccc
Q 001144 1003 RPKEVQTICLILTKSINR-QQRFQREAAAAALSEFVRYSG--GFDSLLEQM-VEALCRHVSDESPTVRGLCLRGLVQIPS 1078 (1141)
Q Consensus 1003 ~~~~~~~i~~~L~~~L~s-~~~~qRi~a~af~sELL~~~~--~~~~l~~~~-l~~L~~~l~D~~~~VR~lslrGLgnl~~ 1078 (1141)
++..++.+-.++..+.++ ..-.=||-..-.|++++-... .+.+.+..+ +..|.--.-|.+..||.+.-|.|.|++.
T Consensus 423 R~gwiq~l~~lm~r~~r~~s~~~Vrik~~~~l~~~~l~nr~~yeeEIL~~VvL~~lshi~L~~~~qvr~l~~~~l~N~a~ 502 (1697)
T KOG3687|consen 423 RDGWIQNLQALMERFFRSESRGAVRIKVLDVLSFVLLINRQFYEEEILNSVVLSQLSHIPLDKDHQVRKLATQLLVNLAE 502 (1697)
T ss_pred CchHHHHHHHHHHHHHHhcccceEEEeeHHHHHHHHhhhhhhhHHHhhhheeeEeeccccccchhHHHHHHHHHHHHHHh
Confidence 455666666666666664 333567777777777665432 222222222 1122222336678999999999999988
Q ss_pred h---hhhhhHHHHHHHHHhh
Q 001144 1079 I---HIHQYATQVLSVILAL 1095 (1141)
Q Consensus 1079 ~---kv~~~~~~lL~all~~ 1095 (1141)
+ +.-.-...++.|+++-
T Consensus 503 ~C~t~~~~~lldi~EA~~~r 522 (1697)
T KOG3687|consen 503 GCHTHHFNSLLDIIEAVMAR 522 (1697)
T ss_pred hcchhcchhHHHHHHHHHhc
Confidence 7 2222234556666654
No 116
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=32.26 E-value=2.2e+02 Score=37.05 Aligned_cols=106 Identities=22% Similarity=0.258 Sum_probs=77.4
Q ss_pred chhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccch-hhhhhHHHHHHHHHhhccCCChhH
Q 001144 1025 QREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYATQVLSVILALLDDLDESV 1103 (1141)
Q Consensus 1025 qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~-kv~~~~~~lL~all~~l~d~~~~v 1103 (1141)
-|..|.+.|.....+.. +..+-.++.....+--+|.+|.||...=+-+|+++.. .-..-...+++-..+...|..+.|
T Consensus 214 sr~sacglf~~~~~~~~-~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsV 292 (759)
T KOG0211|consen 214 SRLSACGLFGKLYVSLP-DDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSV 292 (759)
T ss_pred cchhhhhhhHHhccCCC-hHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhH
Confidence 57777788888766654 2233344777777777899999999999999999876 223344566666777777767799
Q ss_pred HHHHHHHHHHHhccCCCC-CccchHHHHH
Q 001144 1104 QLTAVSCLLTILKSSSKD-AVEPILLNLS 1131 (1141)
Q Consensus 1104 vleam~~L~~lL~~l~~~-~~~~~l~~ia 1131 (1141)
..-|+.++-.++..++.. ++.-.+...+
T Consensus 293 r~~a~~~~~~l~~l~~~~~d~~~~~~~~l 321 (759)
T KOG0211|consen 293 REAAVESLVSLLDLLDDDDDVVKSLTESL 321 (759)
T ss_pred HHHHHHHHHHHHHhcCCchhhhhhhhHHH
Confidence 999999999999999988 5544444443
No 117
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=30.84 E-value=9.7e+02 Score=29.95 Aligned_cols=89 Identities=18% Similarity=0.162 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHH------hccCCCchhHHHHHHHHHHHH-HhhccccchhhHhHHHHHHHHHhhhcCcHHHHHHHHHHH
Q 001144 737 KDELVATLHSCTT------AICDRTKQSAEGAIQAVVEFV-TKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAI 809 (1141)
Q Consensus 737 ~~el~~li~tll~------~L~d~~~~~~~~A~~~L~~~l-~~~g~~l~e~dV~eIv~~i~~~L~~i~~~~~r~~~l~ai 809 (1141)
..+|+|++-++++ |=.|.+...+.-|+.++..++ .++-.++-.-.||.-++.++.-.+++.-...-.--+.++
T Consensus 79 aAaLVDlLd~cL~hnl~p~g~kded~PHaKIAsDi~SSiFLny~K~~~m~~a~p~av~fL~rgn~el~rn~~~ylslaai 158 (851)
T KOG3723|consen 79 AAALVDLLDSCLEHNLRPFGKKDEDTPHAKIASDIMSSIFLNYNKPPVMALAIPIAVKFLHRGNKELCRNMSNYLSLAAI 158 (851)
T ss_pred HHHHHHHHHHHHhccCccCCCCCCCCchhhHHHHHHHHHHHhcCCCCceeeehhhHHHHHhccChhhcccchhhhhHHHH
Confidence 4789999987765 224666677777777777666 444444322238888888888887777543333333333
Q ss_pred H--HhhhcccchhhHHHHh
Q 001144 810 S--CLAENTNSKIVFNEVL 826 (1141)
Q Consensus 810 ~--lLa~~h~~~Vv~~~LL 826 (1141)
. -|-+.|++-++. ..|
T Consensus 159 ~~adLL~~hTEv~~~-siL 176 (851)
T KOG3723|consen 159 TKADLLADHTEVIVK-SIL 176 (851)
T ss_pred hhhhhccCchHHHHH-HHh
Confidence 3 244677887886 887
No 118
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.39 E-value=3.5e+02 Score=35.31 Aligned_cols=394 Identities=11% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCChhhhhhhhcchhHHHHHhhcCCCCCChhHHHHHHHHH
Q 001144 652 IMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFNRIVSSV 731 (1141)
Q Consensus 652 g~l~p~C~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~i~~~~ 731 (1141)
.+.+++=...|.+|...|..|++||+ -.+++-.+..-++. .+-+|
T Consensus 215 ~Lv~LL~~E~n~DIMl~AcRaltyl~---evlP~S~a~vV~~~--------------------------------aIPvl 259 (1051)
T KOG0168|consen 215 VLVALLSHEHNFDIMLLACRALTYLC---EVLPRSSAIVVDEH--------------------------------AIPVL 259 (1051)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHH---hhccchhheeeccc--------------------------------chHHH
Q ss_pred HhhCChHHHHHHHHHHHHhc----cCCCchhH-HHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhcCcHHHHHHHH
Q 001144 732 CILLTKDELVATLHSCTTAI----CDRTKQSA-EGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETL 806 (1141)
Q Consensus 732 ~k~L~~~el~~li~tll~~L----~d~~~~~~-~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i~~~~~r~~~l 806 (1141)
..+|-.-|..|+-.-++++| ..+...+- -||-.....++.....-.... --.|+-.+|.++..-...-+.. ++
T Consensus 260 ~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~-AlaiaaN~Cksi~sd~f~~v~e-al 337 (1051)
T KOG0168|consen 260 LEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRV-ALAIAANCCKSIRSDEFHFVME-AL 337 (1051)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCccchHHHH-HH
Q ss_pred HHHHHhhhcccchhhHHHHhhhhcccccccccccccCCCChhhHHHHhhcC------------------cchHHHHHHHH
Q 001144 807 GAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQH------------------AVLSFLFLEHL 868 (1141)
Q Consensus 807 ~ai~lLa~~h~~~Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~aLa~~------------------~~l~~~vL~~L 868 (1141)
-.++-|-++|.+++|+ .-.--+.+.++.|-.. ......|+++ ..+..-++..|
T Consensus 338 PlL~~lLs~~D~k~ie-s~~ic~~ri~d~f~h~--------~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrml 408 (1051)
T KOG0168|consen 338 PLLTPLLSYQDKKPIE-SVCICLTRIADGFQHG--------PDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRML 408 (1051)
T ss_pred HHHHHHHhhccchhHH-HHHHHHHHHHHhcccC--------hHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHH
Q ss_pred HHHHccCCCccCCCCCCCCCCCCCCcccchhhHHHHHHHHHHHHhcCCcchHHHHHHhhhHHHHHHHHHHhhhccCCCCC
Q 001144 869 ISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSG 948 (1141)
Q Consensus 869 L~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~plaAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~ 948 (1141)
...-.+.|..-.. +.-+-...+|+++|.+.++..-..+....+.-=--|..-.+-++++.++
T Consensus 409 s~msS~~pl~~~t-----------------l~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~- 470 (1051)
T KOG0168|consen 409 SLMSSGSPLLFRT-----------------LLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPC- 470 (1051)
T ss_pred HHHccCChHHHHH-----------------HHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecC-
Q ss_pred CCChhHHHHHHHHHHHHhhCChhHHHHHHhcCCCC-chhhhHhhHHHHHHHHhhcCChhHHHHHHHHHhhhcCCcccchh
Q 001144 949 QHEPLRAILTSFQAFCECVGDLEMRKILARDGEQN-DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQRE 1027 (1141)
Q Consensus 949 ~~~P~~~aleAlk~lL~~~g~~~~~~~le~~g~W~-~~~~~~~GV~lLAram~~~~~~~~~~i~~~L~~~L~s~~~~qRi 1027 (1141)
.-+|.+=++...-.|.-+-..=+..--|. +-..|+.--....|.+.|.+. ..=.+.--..+.
T Consensus 471 ------~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~-----------~~~t~~~~~dkl 533 (1051)
T KOG0168|consen 471 ------LPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINE-----------DTGTSRKQQDKL 533 (1051)
T ss_pred ------CcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhcc-----------Ccccchhhhhhc
Q ss_pred HHHHHHHHhhhccCCccchHHHHHHHHhhhcCCC-CchhhhhhccccCCccch-----hhhhhHHHHHHHHHhhccC-CC
Q 001144 1028 AAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDE-SPTVRGLCLRGLVQIPSI-----HIHQYATQVLSVILALLDD-LD 1100 (1141)
Q Consensus 1028 ~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~-~~~VR~lslrGLgnl~~~-----kv~~~~~~lL~all~~l~d-~~ 1100 (1141)
..-+=-.=+-+.|+..+.+.+.++.+|.+=.... |+.||.-||+.++.+.+- -...+..+-....++|+.. +|
T Consensus 534 ~~~~r~~~l~nqpel~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD 613 (1051)
T KOG0168|consen 534 NGSAREGLLKNQPELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKD 613 (1051)
T ss_pred CCchhhhhhhcCHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCC
Q ss_pred hhHHHHHHHHHHHHhccCCCCCccch
Q 001144 1101 ESVQLTAVSCLLTILKSSSKDAVEPI 1126 (1141)
Q Consensus 1101 ~~vvleam~~L~~lL~~l~~~~~~~~ 1126 (1141)
..|+..|++..--|++++.+.....|
T Consensus 614 ~~vlVgALQvAEiLmeKlpd~F~~~F 639 (1051)
T KOG0168|consen 614 LTVLVGALQVAEILMEKLPDTFSPSF 639 (1051)
T ss_pred CeeEeehHHHHHHHHHHhHHHhhhhH
No 119
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=30.12 E-value=3e+02 Score=31.90 Aligned_cols=105 Identities=19% Similarity=0.246 Sum_probs=66.5
Q ss_pred hHHHHHHHHH--hhh-cCCcccchhH---HHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccch
Q 001144 1006 EVQTICLILT--KSI-NRQQRFQREA---AAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI 1079 (1141)
Q Consensus 1006 ~~~~i~~~L~--~~L-~s~~~~qRi~---a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~ 1079 (1141)
.+|.++..|- |-+ .=.++.+|-. .+..+-.|++-..+ ..+..+.|-.|..++..++..|+.+..+-+|-+...
T Consensus 34 eLpqiaaaLqldpdifgfeNenhrekttlcVscLERLfkakeg-ahlapnlmpdLQrGLiaddasVKiLackqigcilEd 112 (524)
T KOG4413|consen 34 ELPQIAAALQLDPDIFGFENENHREKTTLCVSCLERLFKAKEG-AHLAPNLMPDLQRGLIADDASVKILACKQIGCILED 112 (524)
T ss_pred hhHHHHHHHhcCCCCcccccccccchhhhHHHHHHHHHhhccc-hhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhc
Confidence 4555555443 222 2234455555 33444455555543 345677899999999999999999999999987654
Q ss_pred ----hh--------hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHh
Q 001144 1080 ----HI--------HQYATQVLSVILALLDDLDESVQLTAVSCLLTIL 1115 (1141)
Q Consensus 1080 ----kv--------~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL 1115 (1141)
.| ....++++.++. ..|++|.-.|+..+++|-
T Consensus 113 cDtnaVseillvvNaeilklildcIg----geddeVAkAAiesikria 156 (524)
T KOG4413|consen 113 CDTNAVSEILLVVNAEILKLILDCIG----GEDDEVAKAAIESIKRIA 156 (524)
T ss_pred CchhhHHHHHHHhhhhHHHHHHHHHc----CCcHHHHHHHHHHHHHHH
Confidence 11 122244444443 348889888888888764
No 120
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=29.04 E-value=4.1e+02 Score=25.81 Aligned_cols=87 Identities=14% Similarity=0.168 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhh----c---cchhHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCHHHHHHHHHHHhccCCCCCcCCc
Q 001144 414 IDALVGTNMLSRLLH----V---RHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADS 486 (1141)
Q Consensus 414 ve~~I~~~i~~~~~~----~---kd~~lK~s~l~si~~i~~al~~~~~~~~~f~f~~k~eLl~~l~~~i~~Ep~~~L~s~ 486 (1141)
++.+++. |+.+|.+ . |+...|..-++|+..+-+...+. .=.-++++..|+..=++.+.
T Consensus 5 L~~~~LG-il~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~-------i~~a~pQI~acL~saL~~~e------- 69 (107)
T smart00802 5 LKDHFLG-ILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKH-------ISSALPQIMACLQSALEIPE------- 69 (107)
T ss_pred HHHHHHH-HHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhCchh-------
Confidence 3445554 5555542 2 35567999999998888743321 12246788888887664221
Q ss_pred hHHHHHHHHHHHHHhhhhcccCCCCChhHHHHHHHHhh
Q 001144 487 SIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATL 524 (1141)
Q Consensus 487 ~~~ll~~r~~a~~ait~L~~L~P~l~~e~~~~ll~~cl 524 (1141)
.|..|+.+-..+++. |++++-..+++..+
T Consensus 70 ------L~~~al~~W~~~i~~---L~~~~l~~ll~~~~ 98 (107)
T smart00802 70 ------LRSLALRCWHVLIKT---LKEEELGPLLDQIF 98 (107)
T ss_pred ------HHHHHHHHHHHHHHh---CCHHHHHHHHHHHH
Confidence 556688887777765 55577777776665
No 121
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=28.21 E-value=78 Score=39.47 Aligned_cols=83 Identities=19% Similarity=0.251 Sum_probs=53.2
Q ss_pred HHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccchhhhhhHHHHH
Q 001144 1010 ICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVL 1089 (1141)
Q Consensus 1010 i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~kv~~~~~~lL 1089 (1141)
-...++...++. ...+..|+-|+.-|..+.+ .+.++.++.+..=..|++..||.-++|||..+.... ..+.+.+-
T Consensus 24 ~y~~il~~~kg~-~k~K~Laaq~I~kffk~FP---~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~-~~~v~kva 98 (556)
T PF05918_consen 24 DYKEILDGVKGS-PKEKRLAAQFIPKFFKHFP---DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN-PEHVSKVA 98 (556)
T ss_dssp HHHHHHHGGGS--HHHHHHHHHHHHHHHCC-G---GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHHHH
T ss_pred HHHHHHHHccCC-HHHHHHHHHHHHHHHhhCh---hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH-HHHHhHHH
Confidence 334444444543 4455667779999888865 366889999999999999999999999999997652 23444444
Q ss_pred HHHHhhcc
Q 001144 1090 SVILALLD 1097 (1141)
Q Consensus 1090 ~all~~l~ 1097 (1141)
+.+...|.
T Consensus 99 DvL~QlL~ 106 (556)
T PF05918_consen 99 DVLVQLLQ 106 (556)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 44444433
No 122
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=28.07 E-value=1.5e+03 Score=29.62 Aligned_cols=173 Identities=16% Similarity=0.097 Sum_probs=89.8
Q ss_pred CCHHHHHH-HHHhhhhhhcCChhHHHhhHHHHHHHHHHHHHHhccccccccCCCCCcccccchhhccccCCCCCCCccCC
Q 001144 561 SRADQLLH-ILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVL 639 (1141)
Q Consensus 561 ~~~~~Lq~-il~~L~pWl~S~k~~EReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~f~~~p~~~~~ 639 (1141)
|-+..++. ++.|+.|-++|+-..-|-||+..+++.=.-|-
T Consensus 452 p~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfk--------------------------------------- 492 (970)
T COG5656 452 PAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFK--------------------------------------- 492 (970)
T ss_pred hHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcc---------------------------------------
Confidence 33444443 66999999999999999999999876521111
Q ss_pred CchhhhhhhhHHHH--hhcCc-cCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCChhhhhhhhcchhHHHHHhhcCC
Q 001144 640 PSREALCLGNRVIM--YLPRC-ADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDA 716 (1141)
Q Consensus 640 p~~~~~~lG~lvg~--l~p~C-~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~ 716 (1141)
-.|.+.-. ...-| .|.+..|+-+|+.|++.++. ..+ -+...+..+ +...+.+.++ .+.+
T Consensus 493 ------d~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~--~~q-~h~k~sahV--p~tmekLLsL-------Sn~f 554 (970)
T COG5656 493 ------DNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIF--NEQ-SHEKFSAHV--PETMEKLLSL-------SNTF 554 (970)
T ss_pred ------cchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHh--chh-hhHHHHhhh--hHHHHHHHHh-------cccc
Confidence 12221111 11122 35777899999999988761 111 011111111 2223333333 3333
Q ss_pred CCCC-hhHHHHHHHHHHhhCCh-------HHHHHHHHHHHHhccCCCc------hhHHHHHHHHHHHHHhhccccchhhH
Q 001144 717 SIDP-SEVFNRIVSSVCILLTK-------DELVATLHSCTTAICDRTK------QSAEGAIQAVVEFVTKRGNELSETDV 782 (1141)
Q Consensus 717 ~~~~-~~~~~~i~~~~~k~L~~-------~el~~li~tll~~L~d~~~------~~~~~A~~~L~~~l~~~g~~l~e~dV 782 (1141)
..+. ..++..++..|..-|+| .-..+|+.-+.+-+-+++. .-.-+|+-+|+++... --.+ ++ +
T Consensus 555 eiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~sm-iLSl-en-~ 631 (970)
T COG5656 555 EIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESM-ILSL-EN-R 631 (970)
T ss_pred cchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHH-HHhc-cc-c
Confidence 3333 44446666666666665 2233444444444433311 1112444444444322 2345 66 8
Q ss_pred hHHHHHHHHHh
Q 001144 783 SRTTQSLLSAA 793 (1141)
Q Consensus 783 ~eIv~~i~~~L 793 (1141)
|++++.++..+
T Consensus 632 p~vLk~le~sl 642 (970)
T COG5656 632 PLVLKYLEVSL 642 (970)
T ss_pred hHHHHHHHHHH
Confidence 88888887766
No 123
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.04 E-value=72 Score=39.94 Aligned_cols=88 Identities=26% Similarity=0.252 Sum_probs=55.1
Q ss_pred hcCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccch-hhhhhHHHHHHHHHhhc
Q 001144 1018 INRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYATQVLSVILALL 1096 (1141)
Q Consensus 1018 L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~-kv~~~~~~lL~all~~l 1096 (1141)
+...+-.=|.+|++-+--|-.+.. .+....++.|...++|+-..||.-++..|.-|+.| +++ ...|+.++..+
T Consensus 382 lEDEf~EVR~AAV~Sl~~La~ssP---~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~---eeql~~il~~L 455 (823)
T KOG2259|consen 382 LEDEFYEVRRAAVASLCSLATSSP---GFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIR---EEQLRQILESL 455 (823)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCC---CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheec---HHHHHHHHHHH
Confidence 333333456666665555555433 24466778888888888888888888888777766 333 44577777777
Q ss_pred cCCChhHHHHHHHHHH
Q 001144 1097 DDLDESVQLTAVSCLL 1112 (1141)
Q Consensus 1097 ~d~~~~vvleam~~L~ 1112 (1141)
+|...+|. ++|.-|-
T Consensus 456 ~D~s~dvR-e~l~elL 470 (823)
T KOG2259|consen 456 EDRSVDVR-EALRELL 470 (823)
T ss_pred HhcCHHHH-HHHHHHH
Confidence 77655543 3333333
No 124
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=27.98 E-value=1.2e+02 Score=31.05 Aligned_cols=66 Identities=17% Similarity=0.341 Sum_probs=52.5
Q ss_pred hhhhhcccccchhHHHHHHHhhhcCCCchhhhc---chHHHHHHHHHhhhh-ccHHHHHHHHHHHHHHhhc
Q 001144 3 LLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHS---KRPLLLEAVKSLLDE-QNLAVQKAISELIVVMASH 69 (1141)
Q Consensus 3 ll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~~---k~~~i~~~vk~~l~d-~~~kVr~al~~~I~ama~~ 69 (1141)
+..||.++|.+.-.-||.+|-.++..++..+.. .+ ..+..++.++.+ ...+||.-++++|.+.+..
T Consensus 42 l~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask-~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 42 IMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASR-DFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhH-HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999986542 33 344556666666 7899999999999988743
No 125
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=27.62 E-value=1.3e+02 Score=30.18 Aligned_cols=65 Identities=22% Similarity=0.375 Sum_probs=51.2
Q ss_pred hhhhhcccccchhHHHHHHHhhhcCCCchhhh---cchHHHHHHHHHhhh---hccHHHHHHHHHHHHHHhh
Q 001144 3 LLNKCRLKEEHLSVGALYVLKHLLPRSSEAWH---SKRPLLLEAVKSLLD---EQNLAVQKAISELIVVMAS 68 (1141)
Q Consensus 3 ll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~---~k~~~i~~~vk~~l~---d~~~kVr~al~~~I~ama~ 68 (1141)
|..||+.+|.....-||.+|-.++..+++.+. ..+.+..+ +..++. ..+..||+-++++|...+.
T Consensus 42 L~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~-l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 42 IRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLE-LVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHH-HHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999887653 23455556 445553 4678999999999988775
No 126
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=27.39 E-value=68 Score=37.41 Aligned_cols=90 Identities=19% Similarity=0.188 Sum_probs=63.4
Q ss_pred hHHHHHHHHHhhhcC-CcccchhHHH-HHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccc----h
Q 001144 1006 EVQTICLILTKSINR-QQRFQREAAA-AALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS----I 1079 (1141)
Q Consensus 1006 ~~~~i~~~L~~~L~s-~~~~qRi~a~-af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~----~ 1079 (1141)
.-..|+..+.|++.. .+|.=....+ ||+.-+... ...+.+.++..+.++++|..+.||+.-++.+|.... .
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~ 95 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNS 95 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCc
Confidence 577899999999966 4454344333 555554443 234567899999999999999999999999998865 3
Q ss_pred hhhhhHHHHHHHHHhhccC
Q 001144 1080 HIHQYATQVLSVILALLDD 1098 (1141)
Q Consensus 1080 kv~~~~~~lL~all~~l~d 1098 (1141)
....+...+++.+...+++
T Consensus 96 ~~~~~~~~~~~~L~~~~~~ 114 (339)
T PF12074_consen 96 DSLKFAEPFLPKLLQSLKE 114 (339)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4444555566666666544
No 127
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=27.31 E-value=63 Score=25.79 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhhhccHHHHHHHHHHH
Q 001144 38 PLLLEAVKSLLDEQNLAVQKAISELI 63 (1141)
Q Consensus 38 ~~i~~~vk~~l~d~~~kVr~al~~~I 63 (1141)
+.|...++.-+.|++..||.|.+++|
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 47888888889999999999999875
No 128
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=27.28 E-value=1.4e+02 Score=34.19 Aligned_cols=73 Identities=29% Similarity=0.409 Sum_probs=49.1
Q ss_pred hHHHHHHHH-hhhcCCCCchhhhhhccccCCccchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCC
Q 001144 1046 LLEQMVEAL-CRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSS 1119 (1141)
Q Consensus 1046 l~~~~l~~L-~~~l~D~~~~VR~lslrGLgnl~~~kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~l~ 1119 (1141)
.++.+++.| .-+++.+++.||..+++.||=...... +.+.+-++-+...+...++.|...|++++-+++-.=+
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g 96 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHG 96 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 344566554 478899999999999999995543311 2333334444444433477899999999999987544
No 129
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=26.66 E-value=55 Score=42.04 Aligned_cols=73 Identities=21% Similarity=0.252 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHH-HHHHHhhhcCCCCchhhhhhccccCCccch
Q 001144 1007 VQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPSI 1079 (1141)
Q Consensus 1007 ~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~-~l~~L~~~l~D~~~~VR~lslrGLgnl~~~ 1079 (1141)
.++++..|++.|++....=.+.++.|+-.|--..++.....+. ++..|.+-+..++..++..++|-|.|+...
T Consensus 288 ~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd 361 (708)
T PF05804_consen 288 NKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFD 361 (708)
T ss_pred hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcC
Confidence 4577788888888877777777777777765554422222222 777777778888888999999999999876
No 130
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=26.65 E-value=5.5e+02 Score=25.72 Aligned_cols=94 Identities=13% Similarity=0.055 Sum_probs=54.6
Q ss_pred ChhHHHHHHHHHHhhCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHh--HHHHHHHHHhhhcC
Q 001144 720 PSEVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVS--RTTQSLLSAAVHIT 797 (1141)
Q Consensus 720 ~~~~~~~i~~~~~k~L~~~el~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~--eIv~~i~~~L~~i~ 797 (1141)
|-...-.+|..+... +.-=.+.+-.+...|.++++....-|-.+|..+++..|..+..+ |+ +.++.+..-+..-.
T Consensus 17 dw~~~l~icD~i~~~--~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~e-v~s~~fl~~L~~l~~~~~ 93 (133)
T smart00288 17 DWELILEICDLINST--PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLE-VASKEFLNELVKLIKPKY 93 (133)
T ss_pred CHHHHHHHHHHHhCC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHH-HHhHHHHHHHHHHHcCCC
Confidence 333334455444333 12223444556677777888888899999999999999998433 53 23444443333322
Q ss_pred c-HHHHHHHHHHHHHhhhcc
Q 001144 798 D-KHLRLETLGAISCLAENT 816 (1141)
Q Consensus 798 ~-~~~r~~~l~ai~lLa~~h 816 (1141)
. +.+++.++..+...+...
T Consensus 94 ~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 94 PLPLVKKRILELIQEWADAF 113 (133)
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 2 226666666666665544
No 131
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=26.62 E-value=7e+02 Score=25.41 Aligned_cols=95 Identities=9% Similarity=0.092 Sum_probs=56.9
Q ss_pred ChhHHHHHHHHHHhhCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHh--HHHHHHHHHhh---
Q 001144 720 PSEVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVS--RTTQSLLSAAV--- 794 (1141)
Q Consensus 720 ~~~~~~~i~~~~~k~L~~~el~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~--eIv~~i~~~L~--- 794 (1141)
|-..+-.+|..|... +.-=.+.+..+...|.+++++...-|-.+|.++++..|..+..+ |+ +.++.+..-+.
T Consensus 18 dw~~ileicD~In~~--~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~e-vas~~Fl~el~kl~~~k~ 94 (139)
T cd03567 18 DWEAIQAFCEQINKE--PEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSE-VGKFRFLNELIKLVSPKY 94 (139)
T ss_pred CHHHHHHHHHHHHcC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHH-HHhHHHHHHHHHHhcccc
Confidence 333334455555322 22223455566677778888888889999999999999999433 65 22233333222
Q ss_pred --hcCcHHHHHHHHHHHHHhhhccc
Q 001144 795 --HITDKHLRLETLGAISCLAENTN 817 (1141)
Q Consensus 795 --~i~~~~~r~~~l~ai~lLa~~h~ 817 (1141)
.-+.+.+|+.++..|..-+..++
T Consensus 95 ~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 95 LGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 23456777777777766665543
No 132
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=26.21 E-value=5.8e+02 Score=25.44 Aligned_cols=77 Identities=16% Similarity=0.086 Sum_probs=52.9
Q ss_pred HHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHhH--HHHHHHHHhhh--cCcHHHHHHHHHHHHHhhhcc
Q 001144 741 VATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSR--TTQSLLSAAVH--ITDKHLRLETLGAISCLAENT 816 (1141)
Q Consensus 741 ~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~e--Iv~~i~~~L~~--i~~~~~r~~~l~ai~lLa~~h 816 (1141)
.+.+-.+...|..++++...-|-.+|..+++..|..+..+ |+. -++.+..-+.. -..+.+|+.++..+...+...
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~-i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQ-VADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHH-HhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3444555666777778888899999999999999988433 543 23333333322 457789998888888888765
Q ss_pred cc
Q 001144 817 NS 818 (1141)
Q Consensus 817 ~~ 818 (1141)
+.
T Consensus 115 ~~ 116 (133)
T cd03561 115 GG 116 (133)
T ss_pred cC
Confidence 54
No 133
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=26.17 E-value=1.2e+02 Score=38.41 Aligned_cols=117 Identities=16% Similarity=0.208 Sum_probs=65.8
Q ss_pred HHHHHHHHHhhhcCCcc----cchhHHHHHHHHhhhccC-C----------cc----chHHHHHHHHhhhcCCCCchhhh
Q 001144 1007 VQTICLILTKSINRQQR----FQREAAAAALSEFVRYSG-G----------FD----SLLEQMVEALCRHVSDESPTVRG 1067 (1141)
Q Consensus 1007 ~~~i~~~L~~~L~s~~~----~qRi~a~af~sELL~~~~-~----------~~----~l~~~~l~~L~~~l~D~~~~VR~ 1067 (1141)
-..++..+..+++++.- .=|.+|+.-++.+++... . .. .+.+.+...|.+.....+...+.
T Consensus 429 t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 508 (618)
T PF01347_consen 429 TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKI 508 (618)
T ss_dssp -HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHH
T ss_pred CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHH
Confidence 45666666666655432 234567777777777633 2 11 23344666666666677789999
Q ss_pred hhccccCCccchhhhhhHHHHHHHHHhhccCC---ChhHHHHHHHHHHHHhccCCCCCccchHHHHH
Q 001144 1068 LCLRGLVQIPSIHIHQYATQVLSVILALLDDL---DESVQLTAVSCLLTILKSSSKDAVEPILLNLS 1131 (1141)
Q Consensus 1068 lslrGLgnl~~~kv~~~~~~lL~all~~l~d~---~~~vvleam~~L~~lL~~l~~~~~~~~l~~ia 1131 (1141)
+.||||||+.... .++.+..-+.+. ...+.+.|+.+|+++ .......+.++++.|.
T Consensus 509 ~~LkaLgN~g~~~-------~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~-~~~~~~~v~~~l~~I~ 567 (618)
T PF01347_consen 509 VYLKALGNLGHPE-------SIPVLLPYIEGKEEVPHFIRVAAIQALRRL-AKHCPEKVREILLPIF 567 (618)
T ss_dssp HHHHHHHHHT-GG-------GHHHHHTTSTTSS-S-HHHHHHHHHTTTTG-GGT-HHHHHHHHHHHH
T ss_pred HHHHHhhccCCch-------hhHHHHhHhhhccccchHHHHHHHHHHHHH-hhcCcHHHHHHHHHHh
Confidence 9999999997432 233333333333 446777777777766 3333334455555443
No 134
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=26.06 E-value=5.3e+02 Score=34.93 Aligned_cols=132 Identities=20% Similarity=0.187 Sum_probs=92.8
Q ss_pred hHhhHHHHHHHHhhcCChhHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccCC-------ccchHHHHHHHHhhhcCC
Q 001144 988 WINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG-------FDSLLEQMVEALCRHVSD 1060 (1141)
Q Consensus 988 ~~~GV~lLAram~~~~~~~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~-------~~~l~~~~l~~L~~~l~D 1060 (1141)
-.++|...-.-++..-|..+-+=+..+++.+.+..-.=|-....++..+.-+... ...+..++++.|.+++.|
T Consensus 291 g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~D 370 (1251)
T KOG0414|consen 291 GPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLD 370 (1251)
T ss_pred chhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhc
Confidence 3444544444445445555666677788888887777776666666665544321 123334589999999999
Q ss_pred CCchhhhhhccccCCccch--hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCC
Q 001144 1061 ESPTVRGLCLRGLVQIPSI--HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSS 1119 (1141)
Q Consensus 1061 ~~~~VR~lslrGLgnl~~~--kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~l~ 1119 (1141)
-++-||.=++++...+-.. .-......++.-....+.|++.-|.--||+-++.+|.+-.
T Consensus 371 vsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~P 431 (1251)
T KOG0414|consen 371 VSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHP 431 (1251)
T ss_pred ccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCC
Confidence 9999999999988876332 1123446788888889999999999999999999987643
No 135
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=25.94 E-value=1.4e+02 Score=30.45 Aligned_cols=65 Identities=25% Similarity=0.365 Sum_probs=51.0
Q ss_pred hhhhhcccccchhHHHHHHHhhhcCCCchhhhc---chHHHHHHHHHhh-hhccHHHHHHHHHHHHHHhh
Q 001144 3 LLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHS---KRPLLLEAVKSLL-DEQNLAVQKAISELIVVMAS 68 (1141)
Q Consensus 3 ll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~~---k~~~i~~~vk~~l-~d~~~kVr~al~~~I~ama~ 68 (1141)
+..||..+|.+.-.-||.+|-.++..++..+.. .+.++ ..++.++ ..++.+||+-++++|.+.+.
T Consensus 46 l~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl-~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 46 LKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFM-DELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHH-HHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999988876532 33444 4444555 46789999999999998874
No 136
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=25.68 E-value=2.2e+02 Score=27.11 Aligned_cols=68 Identities=13% Similarity=0.080 Sum_probs=50.6
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchh--hHhHHHHHHHHHhh
Q 001144 727 IVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSET--DVSRTTQSLLSAAV 794 (1141)
Q Consensus 727 i~~~~~k~L~~~el~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~--dV~eIv~~i~~~L~ 794 (1141)
.+......||+.....++..+.+.+.-.......-...++..+++.+|..+... +....++.++..+.
T Consensus 17 ~I~~tv~~Lp~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~~l~~~~~~~~~~L~~L~~~l~ 86 (110)
T PF04003_consen 17 DIENTVRSLPFSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGSYLSSSSPELRPVLRSLQKILR 86 (110)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 344556899999999999999998874456688899999999999999999433 23344455544443
No 137
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.42 E-value=2.6e+02 Score=36.13 Aligned_cols=83 Identities=19% Similarity=0.255 Sum_probs=59.5
Q ss_pred HHHHHhhhcCCCCchhhhhhccccCCccchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCCCCccchHHH
Q 001144 1050 MVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLN 1129 (1141)
Q Consensus 1050 ~l~~L~~~l~D~~~~VR~lslrGLgnl~~~kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~l~~~~~~~~l~~ 1129 (1141)
++--|...++++.-.|-...++.+|..+..-. .-.+++|.-++..+..-|+.|+.||+..++++++.-..++.. ++.+
T Consensus 393 ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~-sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~-ii~~ 470 (968)
T KOG1060|consen 393 ILRELQTYIKSSDRSFAAAAVKAIGRCASRIG-SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLE-ILFQ 470 (968)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC-chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHH-HHHH
Confidence 44445556666655566778888887776522 245788999999999889999999999999999876655422 4555
Q ss_pred HHHHh
Q 001144 1130 LSVRL 1134 (1141)
Q Consensus 1130 ia~rl 1134 (1141)
+|--+
T Consensus 471 La~ll 475 (968)
T KOG1060|consen 471 LARLL 475 (968)
T ss_pred HHHHh
Confidence 55443
No 138
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=25.37 E-value=1.5e+02 Score=31.59 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=53.6
Q ss_pred HHHHHHHHhhhhhhcCChhHHHhhHHHHHHHHHHHHHHhccccccccCCCCCcccccchhhccccCCCCCCCccCCCchh
Q 001144 564 DQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSRE 643 (1141)
Q Consensus 564 ~~Lq~il~~L~pWl~S~k~~EReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~f~~~p~~~~~p~~~ 643 (1141)
.-.|..++++..-..|+++.-|..|+.+...+++.=+ .+ |.
T Consensus 4 ~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGL---------------------vn----------P~-------- 44 (187)
T PF12830_consen 4 ALVQRYLKNILELCLSSDDSVRLAALQVLELILRQGL---------------------VN----------PK-------- 44 (187)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCC---------------------CC----------hH--------
Confidence 4466777777777789999999999999888888211 11 21
Q ss_pred hhhhhhHHHHhhcCccCCChhHHHHHHHHHHHHH
Q 001144 644 ALCLGNRVIMYLPRCADTDSEVRKISAQILDQLF 677 (1141)
Q Consensus 644 ~~~lG~lvg~l~p~C~D~~~~ir~~A~~~i~~Ll 677 (1141)
.++-.++| +-+||++.||..|.+.+..+.
T Consensus 45 -~cvp~lIA----L~ts~~~~ir~~A~~~l~~l~ 73 (187)
T PF12830_consen 45 -QCVPTLIA----LETSPNPSIRSRAYQLLKELH 73 (187)
T ss_pred -HHHhHhhh----hhCCCChHHHHHHHHHHHHHH
Confidence 17777888 588999999999999887775
No 139
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=25.32 E-value=1.4e+03 Score=28.54 Aligned_cols=163 Identities=13% Similarity=0.121 Sum_probs=80.5
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHhcccCCccchhhHHHHHHHHhhcCHHHHHHHHHHHHhhhccccchhhhccccCccc
Q 001144 304 CLGILLQKVADRNYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYR 383 (1141)
Q Consensus 304 ~lG~~L~~~~~~~~V~~~L~~ll~~~~~~~~~ereG~A~~~G~~A~~Hld~vL~~Le~~~k~~~~~~~~~~~~~~k~~~~ 383 (1141)
.+--+|..+....-++ .|...+.+-+.+ +.+..-....+......--..+++.+.++.+.. ..+
T Consensus 345 ~~~Dal~~~GT~~a~~-~i~~~i~~~~~~-~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~---~~~----------- 408 (574)
T smart00638 345 IFLDAVAQAGTPPALK-FIKQWIKNKKIT-PLEAAQLLAVLPHTARYPTEEILKALFELAESP---EVQ----------- 408 (574)
T ss_pred HHHHHHHhcCCHHHHH-HHHHHHHcCCCC-HHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCc---ccc-----------
Confidence 3344455666666566 444455533322 222222222222233345667778888877742 110
Q ss_pred ccchHhHHHHHHHHHHHHHhc-CCchhH--HHHHHHHHHHHHHHHHh---hccchhHHHHHHHHHHHHHHHHhhhhhcCC
Q 001144 384 MEESDDIHAALALMYGYAAKY-APSTVI--EARIDALVGTNMLSRLL---HVRHHTAKQAVITAIDLLGRAVINAAENGA 457 (1141)
Q Consensus 384 ~~e~~~~ks~l~l~YG~va~~-ap~~~l--~~rve~~I~~~i~~~~~---~~kd~~lK~s~l~si~~i~~al~~~~~~~~ 457 (1141)
....++.+.+++||.++.+ |-...- ...++ .+.+.+...+. ..+|..-++.+|+|+.-+|.
T Consensus 409 --~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~---------- 475 (574)
T smart00638 409 --KQPYLRESALLAYGSLVRRYCVNTPSCPDFVLE-ELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH---------- 475 (574)
T ss_pred --ccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHH-HHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC----------
Confidence 1135889999999998762 211100 00011 12222333222 23455566777766543222
Q ss_pred CcCCCCHHHHHHHHHHHhccCCCCCcCCchHHHHHHHHHHHHHhhhhcccCCC
Q 001144 458 SFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPK 510 (1141)
Q Consensus 458 ~f~f~~k~eLl~~l~~~i~~Ep~~~L~s~~~~ll~~r~~a~~ait~L~~L~P~ 510 (1141)
+..+..+..++... ... ++ ++|..|+.|+..+.+..|.
T Consensus 476 -------~~~i~~l~~~l~~~--~~~-~~-----~iR~~Av~Alr~~a~~~p~ 513 (574)
T smart00638 476 -------PSSIKVLEPYLEGA--EPL-ST-----FIRLAAILALRNLAKRDPR 513 (574)
T ss_pred -------hhHHHHHHHhcCCC--CCC-CH-----HHHHHHHHHHHHHHHhCch
Confidence 23344555566522 111 12 3899999998877665554
No 140
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.21 E-value=2.4e+02 Score=36.65 Aligned_cols=53 Identities=8% Similarity=0.184 Sum_probs=43.0
Q ss_pred hhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCCCCccchHHHHHHHh
Q 001144 1081 IHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRL 1134 (1141)
Q Consensus 1081 v~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~l~~~~~~~~l~~ia~rl 1134 (1141)
+.+|...++..+++|.+|+|..-.+.+|..|+.+...+..+... ++..+...|
T Consensus 841 ~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd-~~~ev~~~I 893 (982)
T KOG4653|consen 841 VFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD-FFHEVLQLI 893 (982)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH-HHHHHHHHH
Confidence 35677899999999999998889999999999999888765444 666665554
No 141
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=24.70 E-value=55 Score=30.38 Aligned_cols=67 Identities=25% Similarity=0.249 Sum_probs=49.2
Q ss_pred chHHHHHHHHhhhcCCCCchhhhhhccccCCccch---hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHH
Q 001144 1045 SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTI 1114 (1141)
Q Consensus 1045 ~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~---kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~l 1114 (1141)
.+++++...+ ...++..||.+.++.+.++... +++---+.+++.+-..-.|.+++++.-|..++..|
T Consensus 17 ~fL~Pf~~i~---~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~I 86 (86)
T PF09324_consen 17 DFLKPFEYIM---SNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQLI 86 (86)
T ss_pred HHHHHHHHHH---hccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhhC
Confidence 3444444443 2336789999999999999765 44444478888888888888889999998887653
No 142
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=24.55 E-value=3.5e+02 Score=34.03 Aligned_cols=115 Identities=11% Similarity=0.134 Sum_probs=70.1
Q ss_pred hhhhccchHHHHHHHHHHhhhccCC---CChhhHHHHHHHHHHHHhhc------CChhHHHHHHHHHHHhcccCCccchh
Q 001144 268 LDVVQETDWLISLGNAFTEQYVLYT---PDDDHSALLHRCLGILLQKV------ADRNYVCDKIDWMYKQANIAIPTNRL 338 (1141)
Q Consensus 268 l~~i~d~~W~~~L~~el~~ql~~y~---~~~~eK~fL~k~lG~~L~~~------~~~~~V~~~L~~ll~~~~~~~~~ere 338 (1141)
-..++|.+|..+=.+.++=-+++-. +...||+|+...+--.|+-| +||++|.+.|.-.+.+ | .|
T Consensus 487 arq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQ--Y----pR- 559 (1053)
T COG5101 487 ARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQ--Y----PR- 559 (1053)
T ss_pred HHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeecc--c----hH-
Confidence 3457889999887776666665554 34678999988776666544 7777777666554441 1 12
Q ss_pred hHHHHHHHHhhcCHHHHHHHHHHHHhhhccccchhhhccccCcccccchHhHHHHHHHHHHHHHhcCCchhHHHHH
Q 001144 339 GLAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARI 414 (1141)
Q Consensus 339 G~A~~~G~~A~~Hld~vL~~Le~~~k~~~~~~~~~~~~~~k~~~~~~e~~~~ks~l~l~YG~va~~ap~~~l~~rv 414 (1141)
|=.+--+-|.+|..||=+|... +-|.++-..--.+=.|+..||-+-+.++-
T Consensus 560 -----FLkahw~FLkTVv~KLFEFMhE--------------------~HEGvqDMACDtFiKIvqKC~~hFv~Qq~ 610 (1053)
T COG5101 560 -----FLKAHWSFLKTVVKKLFEFMHE--------------------DHEGVQDMACDTFIKIVQKCPVHFVTQQE 610 (1053)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhh--------------------hhhhHHhhhHHHHHHHHHhCcHHHhhcCC
Confidence 1223345577777777666542 12344443344455778888877665443
No 143
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=23.90 E-value=1.6e+02 Score=37.36 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=53.1
Q ss_pred hHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccC-CccchHHHHHHHHhhhcCCCCchhhhhhccccCCc
Q 001144 1006 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSG-GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQI 1076 (1141)
Q Consensus 1006 ~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~-~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl 1076 (1141)
.+.+++++++++..++...=|.-+.-++.-++++.. -+..+-..+...|..++.|-.|+||.-++..|..+
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrl 153 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRL 153 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 577888888888888888777777778888887654 34345555777788888898899997776666644
No 144
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=22.79 E-value=3e+02 Score=31.20 Aligned_cols=70 Identities=9% Similarity=0.050 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccC-CccchHHHHHHHHhhhcC-CCCchhhhhhccccCCc
Q 001144 1007 VQTICLILTKSINRQQRFQREAAAAALSEFVRYSG-GFDSLLEQMVEALCRHVS-DESPTVRGLCLRGLVQI 1076 (1141)
Q Consensus 1007 ~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~-~~~~l~~~~l~~L~~~l~-D~~~~VR~lslrGLgnl 1076 (1141)
.+.+|=...-.|++.+|..-+.|.-.+.+++...+ .+....+.+....-.... .+-+-+..+.+|||-+-
T Consensus 5 ~pQlFW~~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss 76 (262)
T PF14225_consen 5 FPQLFWTAVACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSS 76 (262)
T ss_pred hhHHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCC
Confidence 45667777778899999999999999999998876 333222323333222211 23378999999999754
No 145
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=22.74 E-value=2.2e+02 Score=37.37 Aligned_cols=69 Identities=14% Similarity=0.226 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccC---CccchHHHHHHHHhhhcCCCCchhhhhhccccC
Q 001144 1006 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSG---GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLV 1074 (1141)
Q Consensus 1006 ~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~---~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLg 1074 (1141)
.+-.+...+.-.+++.....|--...||.-.+..-. .....++.++-.+..+.+|.+..||..+++.+|
T Consensus 368 ~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~ 439 (815)
T KOG1820|consen 368 PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVA 439 (815)
T ss_pred cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHH
Confidence 344444444455555444444444444444444322 222333445555555555555555555544444
No 146
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=22.69 E-value=9.2e+02 Score=30.30 Aligned_cols=169 Identities=15% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHhhCChhHHHHHHhcCCCC--chhhhHhhHHHHHHHHhhcCChhHHHHHHHHHhhh-cCCcccchhHHHHHHHH
Q 001144 959 SFQAFCECVGDLEMRKILARDGEQN--DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSI-NRQQRFQREAAAAALSE 1035 (1141)
Q Consensus 959 Alk~lL~~~g~~~~~~~le~~g~W~--~~~~~~~GV~lLAram~~~~~~~~~~i~~~L~~~L-~s~~~~qRi~a~af~sE 1035 (1141)
|.-+||.+...+.+..-+..--.+- -.+.|---+..-.|+++-.-|..-..++.+|...| +.+.-.-+-.++-.++.
T Consensus 360 AITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd 439 (898)
T COG5240 360 AITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISD 439 (898)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q ss_pred hhhccCCccchHHHHHHHHhhhcCCCC---chhhhhhccccCCccchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHH
Q 001144 1036 FVRYSGGFDSLLEQMVEALCRHVSDES---PTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLL 1112 (1141)
Q Consensus 1036 LL~~~~~~~~l~~~~l~~L~~~l~D~~---~~VR~lslrGLgnl~~~kv~~~~~~lL~all~~l~d~~~~vvleam~~L~ 1112 (1141)
.+..-+ ..-+.++..|+..+.|.. -+||.+++-|=-.--...-.+|...+.+-++-- +.-|.-.|+.+|+
T Consensus 440 ~~~~~p---~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLE----N~ivRsaAv~aLs 512 (898)
T COG5240 440 AMENDP---DSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILE----NNIVRSAAVQALS 512 (898)
T ss_pred HHhhCc---hHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHh----hhHHHHHHHHHHH
Q ss_pred HHhccCCCCCccchHHHHHHHh
Q 001144 1113 TILKSSSKDAVEPILLNLSVRL 1134 (1141)
Q Consensus 1113 ~lL~~l~~~~~~~~l~~ia~rl 1134 (1141)
+.--...+..+---..++-.|+
T Consensus 513 kf~ln~~d~~~~~sv~~~lkRc 534 (898)
T COG5240 513 KFALNISDVVSPQSVENALKRC 534 (898)
T ss_pred HhccCccccccHHHHHHHHHHH
No 147
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.16 E-value=1.7e+03 Score=27.86 Aligned_cols=114 Identities=14% Similarity=0.196 Sum_probs=70.1
Q ss_pred HHHHHHHhhhc-CCcccchhHHHHHHHHhhhccC-CccchHHH-HHHHHhhhcCCCCchhhhhhccccCCccch----hh
Q 001144 1009 TICLILTKSIN-RQQRFQREAAAAALSEFVRYSG-GFDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPSI----HI 1081 (1141)
Q Consensus 1009 ~i~~~L~~~L~-s~~~~qRi~a~af~sELL~~~~-~~~~l~~~-~l~~L~~~l~D~~~~VR~lslrGLgnl~~~----kv 1081 (1141)
+.+..+...+. ++.+..|.-|.=++|-.-.-.. .-+.+.+. ++-.|.+-++..+--.|+-+.-.++|++.+ ++
T Consensus 321 ~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi 400 (514)
T KOG0166|consen 321 GALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQI 400 (514)
T ss_pred ChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHH
Confidence 44566666676 4444455555544444322111 11112222 455566667777788899999999999775 32
Q ss_pred hhh-HHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCCCC
Q 001144 1082 HQY-ATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDA 1122 (1141)
Q Consensus 1082 ~~~-~~~lL~all~~l~d~~~~vvleam~~L~~lL~~l~~~~ 1122 (1141)
+-. ...++..+.+.|.-+|.+++.-++.+|..||...+...
T Consensus 401 ~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~ 442 (514)
T KOG0166|consen 401 KYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEK 442 (514)
T ss_pred HHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhc
Confidence 211 12356777777766788889999999999988766544
No 148
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=20.81 E-value=1.9e+02 Score=29.54 Aligned_cols=67 Identities=27% Similarity=0.300 Sum_probs=52.6
Q ss_pred hhhhhhcccccchhHHHHHHHhhhcCCCchhhhc---chHHHHHHHHHhh-----hhccHHHHHHHHHHHHHHhh
Q 001144 2 FLLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHS---KRPLLLEAVKSLL-----DEQNLAVQKAISELIVVMAS 68 (1141)
Q Consensus 2 Fll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~~---k~~~i~~~vk~~l-----~d~~~kVr~al~~~I~ama~ 68 (1141)
.+..|+.++|.+.-+-||.+|-.++..+++.+.. ++.++-+.+|..- ..+..+||.-++++|.+-+.
T Consensus 42 ai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 42 LLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999887643 4556666655442 13678999999999988774
No 149
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=20.64 E-value=1.1e+03 Score=26.55 Aligned_cols=119 Identities=16% Similarity=0.106 Sum_probs=67.4
Q ss_pred HhHHHHHHHHHh---hhcCcHHHHHHHHHHHHHhhhcccchhhHHHHhhhhcccccccccccccCCCChhh---------
Q 001144 782 VSRTTQSLLSAA---VHITDKHLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQD--------- 849 (1141)
Q Consensus 782 V~eIv~~i~~~L---~~i~~~~~r~~~l~ai~lLa~~h~~~Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~--------- 849 (1141)
+|++.+.+-... ..+.+..-......|+++||+.--..... .++. .+.++ +. +++.
T Consensus 33 ~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~re~~A~~-~li~-------l~~~~--~~--~~~~l~GD~~tE~ 100 (249)
T PF06685_consen 33 TPELLKILEDAIERANELLDDEEYNLHFYALYLLAQFREERALP-PLIR-------LFSQD--DD--FLEDLFGDFITED 100 (249)
T ss_pred hHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHHhhhhhHH-HHHH-------HHcCC--cc--hHHHHHcchhHhH
Confidence 444444444433 33333344455678888888775544443 3331 11222 11 3232
Q ss_pred HHHHhhcCcchHHHHHHHHHHHHccCCCccCCCCCCCCCCCCCCcccchhhHHHHHHHHHHHHhcCCcchHHHHHHhhhH
Q 001144 850 AFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAP 929 (1141)
Q Consensus 850 ~W~aLa~~~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~plaAt~aL~Ell~~~~~~~~~av~~~fp~ 929 (1141)
+|+++++=...-...+..++. ++ .+..+...||+.||..+...+ ...|+.|-++|++
T Consensus 101 l~~ilasv~~G~~~~L~~li~---~~-------------------~~~~yvR~aa~~aL~~l~~~~-~~~Re~vi~~f~~ 157 (249)
T PF06685_consen 101 LPRILASVGDGDIEPLKELIE---DP-------------------DADEYVRMAAISALAFLVHEG-PISREEVIQYFRE 157 (249)
T ss_pred HHHHHHHHhCCCHHHHHHHHh---CC-------------------cHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 666666544444444443322 10 124466889999999887775 3779999999999
Q ss_pred HHHHHH
Q 001144 930 VLAALT 935 (1141)
Q Consensus 930 Lf~aLL 935 (1141)
+|-..+
T Consensus 158 ll~~~l 163 (249)
T PF06685_consen 158 LLNYFL 163 (249)
T ss_pred HHHHHh
Confidence 997644
No 150
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=20.61 E-value=1.9e+02 Score=28.98 Aligned_cols=66 Identities=26% Similarity=0.346 Sum_probs=49.7
Q ss_pred hhhhhhcccccchhHHHHHHHhhhcCCCchhhhc---chHHHHHHHHHhhhh-ccHH-HHHHHHHHHHHHhh
Q 001144 2 FLLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHS---KRPLLLEAVKSLLDE-QNLA-VQKAISELIVVMAS 68 (1141)
Q Consensus 2 Fll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~~---k~~~i~~~vk~~l~d-~~~k-Vr~al~~~I~ama~ 68 (1141)
+|..||.++|...-.-||.+|-.++..+++.+.. .+.++ ..++.++.+ .+.. ||+.++++|.+.+.
T Consensus 41 ~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl-~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 41 LLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFL-NELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHH-HHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 5778999999999999999999999988876532 33444 455555543 3333 99999999988775
No 151
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=20.52 E-value=2.4e+02 Score=31.70 Aligned_cols=98 Identities=18% Similarity=0.262 Sum_probs=48.4
Q ss_pred HHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcC-CC-CchhhhhhccccCCccch-----hhhh
Q 001144 1011 CLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVS-DE-SPTVRGLCLRGLVQIPSI-----HIHQ 1083 (1141)
Q Consensus 1011 ~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~-D~-~~~VR~lslrGLgnl~~~-----kv~~ 1083 (1141)
+..+...++++...-|.-|.-.+.-+=-+. .++...+..+...++... ++ |..|...++|-|.||+.. -+..
T Consensus 56 i~lI~~lL~~p~~~vr~~AL~aL~Nls~~~-en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~ 134 (254)
T PF04826_consen 56 ISLIGSLLNDPNPSVREKALNALNNLSVND-ENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN 134 (254)
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh
Confidence 344555566665555544443333221111 233334444444444433 33 578888889999998653 2333
Q ss_pred hHHHHHHHHHhhccCCChhHHHHHHHHHHH
Q 001144 1084 YATQVLSVILALLDDLDESVQLTAVSCLLT 1113 (1141)
Q Consensus 1084 ~~~~lL~all~~l~d~~~~vvleam~~L~~ 1113 (1141)
+.+.+++ .+...++.+...++..|.+
T Consensus 135 ~i~~ll~----LL~~G~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 135 YIPDLLS----LLSSGSEKTKVQVLKVLVN 160 (254)
T ss_pred hHHHHHH----HHHcCChHHHHHHHHHHHH
Confidence 4444443 3333355555455554443
Done!