Query 001144
Match_columns 1141
No_of_seqs 217 out of 344
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 13:14:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001144.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001144hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u6g_C TIP120 protein, CAND1; 99.4 1.3E-07 4.6E-12 125.6 60.4 900 3-1118 91-1096(1230)
2 1u6g_C TIP120 protein, CAND1; 99.3 2.2E-06 7.4E-11 114.0 63.3 932 3-1127 11-1045(1230)
3 2bpt_A Importin beta-1 subunit 99.2 3.4E-07 1.1E-11 116.3 51.4 589 322-1130 136-779 (861)
4 4fdd_A Transportin-1; heat rep 99.2 3.3E-07 1.1E-11 117.1 50.7 681 4-826 54-795 (852)
5 4fdd_A Transportin-1; heat rep 99.1 1.1E-06 3.8E-11 112.3 44.9 559 388-1133 104-715 (852)
6 1qgr_A Protein (importin beta 99.0 3.1E-05 1.1E-09 98.4 52.4 612 333-1115 143-870 (876)
7 2bpt_A Importin beta-1 subunit 98.9 7.2E-06 2.5E-10 104.0 42.1 566 430-1129 107-723 (861)
8 1qgr_A Protein (importin beta 98.8 0.00025 8.4E-09 90.1 53.1 332 741-1120 407-778 (876)
9 1b3u_A Protein (protein phosph 98.8 7.3E-06 2.5E-10 99.0 37.0 475 388-1114 101-585 (588)
10 1b3u_A Protein (protein phosph 98.8 2.9E-06 1E-10 102.5 33.0 528 428-1131 20-563 (588)
11 1ibr_B P95, importin beta-1 su 97.8 0.03 1E-06 64.9 35.2 113 1007-1121 319-442 (462)
12 1ibr_B P95, importin beta-1 su 97.5 0.047 1.6E-06 63.2 30.0 94 1004-1097 361-461 (462)
13 2vgl_B AP-2 complex subunit be 97.5 0.29 9.8E-06 59.7 38.1 396 657-1120 57-497 (591)
14 2jdq_A Importin alpha-1 subuni 97.0 0.032 1.1E-06 64.6 21.6 324 746-1119 24-393 (450)
15 1wa5_C Importin alpha RE-expor 96.7 2.7 9.2E-05 54.1 47.2 82 742-826 720-802 (960)
16 2x1g_F Cadmus; transport prote 96.6 1.6 5.3E-05 56.2 34.4 205 918-1131 395-630 (971)
17 1w63_A Adapter-related protein 96.5 2.4 8.2E-05 51.8 34.9 181 292-509 81-266 (618)
18 1wa5_B Importin alpha subunit; 96.4 0.066 2.3E-06 64.0 18.8 324 744-1119 89-460 (530)
19 1w63_A Adapter-related protein 96.4 0.3 1E-05 60.0 24.6 70 563-678 102-171 (618)
20 2qk2_A LP04448P; mini spindles 96.3 0.0069 2.4E-07 64.9 8.4 136 989-1129 78-218 (242)
21 1wa5_C Importin alpha RE-expor 96.2 4.8 0.00016 51.7 35.8 138 998-1135 387-554 (960)
22 2qk1_A Protein STU2; STU2P, XM 96.1 0.012 4.2E-07 63.8 9.0 142 989-1130 82-234 (249)
23 4b8j_A Importin subunit alpha- 96.1 0.2 7E-06 59.6 20.2 326 744-1118 76-445 (528)
24 3ul1_B Importin subunit alpha- 95.8 0.7 2.4E-05 55.1 23.5 326 747-1119 62-433 (510)
25 4b8j_A Importin subunit alpha- 95.6 2 7E-05 50.8 26.2 385 647-1126 76-506 (528)
26 2jdq_A Importin alpha-1 subuni 95.5 2 6.9E-05 49.2 25.2 356 2-448 24-391 (450)
27 3tpo_A Importin subunit alpha- 95.5 1.3 4.5E-05 52.9 24.3 329 744-1119 78-452 (529)
28 1jdh_A Beta-catenin; beta-cate 95.4 1.1 3.7E-05 52.8 23.1 396 646-1115 18-488 (529)
29 4hxt_A De novo protein OR329; 95.4 0.21 7.1E-06 52.5 14.9 115 1009-1123 128-248 (252)
30 2vgl_A Adaptor protein complex 95.0 3.2 0.00011 50.8 26.0 198 901-1119 346-553 (621)
31 2db0_A 253AA long hypothetical 95.0 0.065 2.2E-06 54.8 8.6 109 1001-1116 136-246 (253)
32 2qk2_A LP04448P; mini spindles 94.9 0.04 1.4E-06 58.9 7.5 99 1018-1117 24-128 (242)
33 2z6g_A B-catenin; FULL-length, 94.3 1.1 3.9E-05 56.4 20.0 293 747-1116 155-472 (780)
34 1wa5_B Importin alpha subunit; 94.3 3.6 0.00012 48.8 23.4 354 2-450 91-460 (530)
35 2qk1_A Protein STU2; STU2P, XM 94.2 0.077 2.6E-06 57.5 7.6 109 1014-1123 21-140 (249)
36 2z6h_A Catenin beta-1, beta-ca 93.9 5.4 0.00018 48.7 24.4 149 646-816 15-171 (644)
37 4db8_A Armadillo-repeat protei 93.8 0.17 5.9E-06 53.6 9.4 107 1010-1116 97-209 (252)
38 3tpo_A Importin subunit alpha- 93.8 0.63 2.2E-05 55.7 15.4 111 1006-1116 248-364 (529)
39 2z6h_A Catenin beta-1, beta-ca 93.6 2.4 8.4E-05 51.8 20.7 321 749-1116 21-382 (644)
40 2z6g_A B-catenin; FULL-length, 93.6 20 0.0007 44.8 32.5 70 744-817 362-431 (780)
41 1jdh_A Beta-catenin; beta-cate 93.2 5.2 0.00018 46.9 22.0 108 1009-1117 227-340 (529)
42 4db8_A Armadillo-repeat protei 93.2 0.15 5.1E-06 54.1 7.8 108 1010-1117 55-168 (252)
43 4db6_A Armadillo repeat protei 92.8 0.45 1.5E-05 48.8 10.5 106 1010-1115 97-208 (210)
44 4db6_A Armadillo repeat protei 92.7 0.09 3.1E-06 54.2 4.9 109 1008-1116 11-125 (210)
45 3now_A UNC-45 protein, SD10334 92.7 27 0.00094 43.9 43.3 109 1009-1117 665-783 (810)
46 4hxt_A De novo protein OR329; 92.6 0.24 8.1E-06 52.1 8.2 108 1009-1116 86-199 (252)
47 3ul1_B Importin subunit alpha- 91.9 1.4 4.7E-05 52.5 14.6 111 1006-1116 229-345 (510)
48 2x19_B Importin-13; nuclear tr 90.8 44 0.0015 42.4 33.8 136 995-1134 430-573 (963)
49 3m1i_C Exportin-1; heat repeat 90.4 14 0.00047 48.0 23.0 198 918-1119 380-621 (1049)
50 3tjz_B Coatomer subunit gamma; 90.1 1.3 4.4E-05 50.5 11.3 127 984-1117 40-169 (355)
51 2vgl_B AP-2 complex subunit be 89.5 42 0.0015 40.3 37.9 402 291-826 59-470 (591)
52 2vgl_A Adaptor protein complex 89.5 45 0.0015 40.6 35.3 59 5-69 118-178 (621)
53 3opb_A SWI5-dependent HO expre 89.0 55 0.0019 40.9 26.4 66 1011-1076 656-726 (778)
54 2x19_B Importin-13; nuclear tr 88.9 60 0.002 41.2 34.9 72 743-817 530-602 (963)
55 1te4_A Conserved protein MTH18 88.5 0.26 9E-06 47.2 3.5 53 1053-1112 77-129 (131)
56 3ltj_A Alpharep-4; protein eng 88.2 0.63 2.2E-05 47.5 6.4 91 1010-1116 108-198 (201)
57 3ltm_A Alpha-REP4; protein eng 87.5 0.66 2.3E-05 47.8 6.1 99 997-1114 72-170 (211)
58 3ltj_A Alpharep-4; protein eng 86.7 0.76 2.6E-05 46.9 5.9 89 1010-1114 46-134 (201)
59 3ltm_A Alpha-REP4; protein eng 85.3 0.64 2.2E-05 47.9 4.6 91 1008-1114 49-139 (211)
60 1xqr_A HSPBP1 protein; armadil 85.3 0.75 2.5E-05 51.1 5.3 128 987-1116 8-154 (296)
61 2of3_A ZYG-9; multifunctional 84.0 51 0.0018 35.7 19.0 181 563-873 78-262 (266)
62 1te4_A Conserved protein MTH18 83.9 0.85 2.9E-05 43.6 4.4 90 1008-1114 11-100 (131)
63 2x1g_F Cadmus; transport prote 83.3 1.1E+02 0.0038 38.9 52.0 74 9-87 51-130 (971)
64 1oyz_A Hypothetical protein YI 82.5 1.5 5.1E-05 47.3 6.2 101 1004-1114 85-186 (280)
65 1oyz_A Hypothetical protein YI 82.0 2.1 7.1E-05 46.1 7.1 89 1010-1114 160-248 (280)
66 1xqr_A HSPBP1 protein; armadil 80.1 3.4 0.00012 45.7 8.0 109 1009-1117 124-239 (296)
67 3now_A UNC-45 protein, SD10334 75.3 5.6 0.00019 50.2 8.8 109 1008-1116 579-694 (810)
68 2of3_A ZYG-9; multifunctional 74.2 6.5 0.00022 42.8 7.9 165 901-1085 63-246 (266)
69 4ffb_C Protein STU2; tubulin f 72.9 49 0.0017 35.5 14.8 197 574-820 15-218 (278)
70 3ibv_A Exportin-T; karyopherin 72.2 72 0.0025 41.1 18.4 179 919-1097 372-588 (980)
71 3ibv_A Exportin-T; karyopherin 70.7 2.4E+02 0.0083 36.2 30.5 77 1060-1137 506-586 (980)
72 2iw3_A Elongation factor 3A; a 67.5 33 0.0011 44.1 13.4 286 747-1117 19-328 (986)
73 2db0_A 253AA long hypothetical 66.0 26 0.0009 36.0 9.5 126 999-1130 97-222 (253)
74 4ffb_C Protein STU2; tubulin f 65.6 8.9 0.0003 41.4 6.8 71 1006-1076 136-210 (278)
75 4ady_A RPN2, 26S proteasome re 62.2 1.1E+02 0.0037 39.2 16.4 74 388-477 626-699 (963)
76 3grl_A General vesicular trans 60.2 25 0.00085 42.9 9.7 71 782-874 19-92 (651)
77 1xm9_A Plakophilin 1; armadill 59.8 8.4 0.00029 45.0 5.6 105 1013-1117 6-117 (457)
78 4gmo_A Putative uncharacterize 56.3 7.6 0.00026 48.1 4.6 66 3-70 39-107 (684)
79 1x5b_A Signal transducing adap 49.1 99 0.0034 30.8 10.7 93 718-813 30-124 (163)
80 3nmw_A APC variant protein; AR 48.0 18 0.00062 40.9 5.6 72 1050-1121 264-339 (354)
81 4gmo_A Putative uncharacterize 47.2 7.2 0.00025 48.2 2.3 86 1007-1096 36-128 (684)
82 4hat_C Exportin-1; heat repeat 44.2 23 0.0008 45.9 6.4 215 910-1130 374-632 (1023)
83 1vsy_5 Proteasome activator BL 40.2 7.1E+02 0.024 32.0 25.0 266 268-601 456-743 (997)
84 3l9t_A Putative uncharacterize 39.8 1.1E+02 0.0036 32.7 9.5 89 1007-1103 101-194 (240)
85 3tjz_B Coatomer subunit gamma; 39.7 55 0.0019 37.0 7.9 114 954-1076 86-203 (355)
86 3nmz_A APC variant protein; pr 39.6 3.7E+02 0.013 31.2 15.2 108 1009-1116 243-363 (458)
87 3nmz_A APC variant protein; pr 39.3 32 0.0011 40.4 6.0 69 1050-1118 380-452 (458)
88 3ldz_A STAM-1, signal transduc 39.0 2.1E+02 0.0073 27.5 11.1 97 717-817 19-117 (140)
89 3b2a_A TON_1937, putative unch 38.3 1.3E+02 0.0046 32.1 9.8 68 1050-1117 151-219 (265)
90 3zyq_A Hepatocyte growth facto 38.1 1.6E+02 0.0054 30.9 10.7 95 718-815 23-119 (226)
91 3opb_A SWI5-dependent HO expre 37.4 7E+02 0.024 31.1 22.7 97 1023-1120 308-410 (778)
92 3tt9_A Plakophilin-2; cell adh 35.5 36 0.0012 36.1 5.2 68 1012-1079 11-82 (233)
93 3nmw_A APC variant protein; AR 35.4 84 0.0029 35.3 8.6 108 1009-1116 127-247 (354)
94 1juq_A ADP-ribosylation factor 35.1 2.3E+02 0.0079 28.4 10.9 95 718-815 28-129 (171)
95 3b2a_A TON_1937, putative unch 35.1 1.1E+02 0.0036 32.8 8.4 133 984-1119 46-182 (265)
96 3u0r_A Apoptosis inhibitor 5; 35.1 48 0.0016 38.9 6.4 74 1017-1097 37-110 (507)
97 3gjx_A Exportin-1; transport, 35.0 8.6E+02 0.03 31.4 25.8 83 737-820 561-650 (1073)
98 3gjx_A Exportin-1; transport, 30.0 45 0.0016 43.3 5.7 120 1005-1127 517-655 (1073)
99 1mhq_A ADP-ribosylation factor 28.9 4E+02 0.014 25.9 11.2 96 718-816 16-118 (148)
100 3g2s_A C-terminal fragment of 28.7 3.3E+02 0.011 26.6 10.5 99 716-817 24-129 (149)
101 4ady_A RPN2, 26S proteasome re 26.8 1.1E+03 0.037 30.1 30.9 87 312-410 387-473 (963)
102 3l6x_A Catenin delta-1; cateni 26.5 47 0.0016 40.2 4.6 62 1017-1078 56-119 (584)
103 2iw3_A Elongation factor 3A; a 26.2 1.6E+02 0.0056 37.7 9.7 110 1024-1135 110-223 (986)
104 1dvp_A HRS, hepatocyte growth 25.9 2.9E+02 0.0099 28.6 10.2 95 718-815 20-116 (220)
105 3grl_A General vesicular trans 25.3 2.8E+02 0.0096 33.8 11.0 117 991-1116 61-195 (651)
106 1vdy_A Hypothetical protein (R 25.2 54 0.0019 32.0 4.0 69 1-69 52-131 (140)
107 3l6x_A Catenin delta-1; cateni 25.1 1.2E+02 0.0041 36.7 7.8 104 1011-1115 357-475 (584)
108 1vsy_5 Proteasome activator BL 24.3 7.1E+02 0.024 31.9 15.2 424 646-1113 505-963 (997)
109 3ldz_A STAM-1, signal transduc 22.4 96 0.0033 30.0 5.2 65 3-68 47-114 (140)
110 1vsy_4 Proteasome activator BL 22.2 1.4E+02 0.0049 37.4 8.0 124 733-879 326-461 (799)
111 1elk_A Target of MYB1; superhe 21.1 4.7E+02 0.016 25.5 10.1 96 718-816 31-132 (157)
112 3gs3_A Symplekin, LD45768P; he 20.2 4.8E+02 0.016 27.8 10.6 116 1001-1119 45-176 (257)
113 1juq_A ADP-ribosylation factor 20.1 1.1E+02 0.0038 30.7 5.2 66 3-69 55-129 (171)
No 1
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.35 E-value=1.3e-07 Score=125.61 Aligned_cols=900 Identities=13% Similarity=0.111 Sum_probs=454.4
Q ss_pred hhhhhcccccchhHHHHHHHhhhcCCCchh------hhcchHHHHHHHHHhhh-hccHHHHHHHHHHHHHHhhcc--ccc
Q 001144 3 LLNKCRLKEEHLSVGALYVLKHLLPRSSEA------WHSKRPLLLEAVKSLLD-EQNLAVQKAISELIVVMASHC--YLI 73 (1141)
Q Consensus 3 ll~~l~~~~E~~Rvg~L~vlrhlins~~~~------~~~k~~~i~~~vk~~l~-d~~~kVr~al~~~I~ama~~~--yl~ 73 (1141)
++..+.+.++..|-++...++.+.....+. .....+.++..+-..+. +.+..+|...+.++..++... .+.
T Consensus 91 Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~ 170 (1230)
T 1u6g_C 91 LCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLV 170 (1230)
T ss_dssp HHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCT
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHH
Confidence 455667778888999999888887644432 22234566666666666 478899999999998888641 111
Q ss_pred CcccccceeeeeccccccCccccccccccccCCCCCchHHHHHHHHHHHHHhccchh-hhHhhHHHHHhhcccccccchh
Q 001144 74 GPSGELFVEYLVRHCALSDQKKYVNESSKVKIGAFCPTELRAICEKGLLLLTITIPE-MQHILWPLLLKMIIPRAYTSAA 152 (1141)
Q Consensus 74 ~~~g~~~i~fiv~q~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~~~L~ll~ttv~~-m~~vLWP~LL~~i~p~~yT~al 152 (1141)
.. -..++..++... . .+...+|..+..++..+....+. +-.-+-|.|++++....-...-
T Consensus 171 ~~-~~~ll~~l~~~L-----------------~-~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r 231 (1230)
T 1u6g_C 171 NF-HPSILTCLLPQL-----------------T-SPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTT 231 (1230)
T ss_dssp TT-HHHHHHHHGGGG-----------------G-CSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSC
T ss_pred HH-HHHHHHHHHHHH-----------------c-CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHH
Confidence 10 011222222211 0 01347899888888887766532 1123345555555433222344
Q ss_pred hhHHHHHHHHHhhhcCCCCCccccccCCCCCCCHHHHHHHHHHHhcCcccchhhHHHHHHHHHhhCCCCCcchhhhHHHh
Q 001144 153 ATVCRCISELCRHRSSSSNVMLSECKARDDIPNPEELFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLFWQDE 232 (1141)
Q Consensus 153 ~~ick~l~~La~k~~~~~~~~~i~~~~~~~lPsp~~llaRllvl~~~P~~~~~~g~~~L~lL~~l~~~ih~~l~~~W~~~ 232 (1141)
...|.++..++..... .|. ..++ .++--++-.+.++. .+- -..++..+..+.......+.+....-
T Consensus 232 ~~a~~~l~~l~~~~~~-------~~~--~~l~---~l~~~ll~~l~d~~-~~v-R~~a~~~l~~l~~~~~~~~~~~l~~l 297 (1230)
T 1u6g_C 232 RTYIQCIAAISRQAGH-------RIG--EYLE---KIIPLVVKFCNVDD-DEL-REYCIQAFESFVRRCPKEVYPHVSTI 297 (1230)
T ss_dssp TTHHHHHHHHHHHSSG-------GGT--TSCT---THHHHHHHHHSSCC-TTT-HHHHHHHHHHHHHCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhHH-------HHH--HHHH---HHHHHHHHHhcCCC-HHH-HHHHHHHHHHHHHHChHHHHHhHHHH
Confidence 4578888888865321 111 0122 34444444444432 111 23444555555555566667788888
Q ss_pred hhhhhhcccccccCCCCcchHhhHHHHHHHH-HH-------HhhhhhccchHHHHHH-HHHHhhhc-c------------
Q 001144 233 IPKMKAYVSDTEDLKLDPSYQETWDDMIINF-LA-------ESLDVVQETDWLISLG-NAFTEQYV-L------------ 290 (1141)
Q Consensus 233 IP~Ll~~L~~~~~~~~~~~~q~~We~~Ll~f-L~-------~sl~~i~d~~W~~~L~-~el~~ql~-~------------ 290 (1141)
+|.+++++........+ ....|.+..-+. .. +....-+|..|..+-+ .+....+. .
T Consensus 298 i~~ll~~l~~d~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l 375 (1230)
T 1u6g_C 298 INICLKYLTYDPNYNYD--DEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTV 375 (1230)
T ss_dssp HHHHTTCCCCC--------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTT
T ss_pred HHHHHHHhCCCCCCCCc--ccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 99999888532110000 001121110000 00 0000112334653221 11111111 1
Q ss_pred --------CCCChhhHHHHHHHHHHHHhhcCC-----------------hhHHHHHHHHHHHh----cccCCccchhhHH
Q 001144 291 --------YTPDDDHSALLHRCLGILLQKVAD-----------------RNYVCDKIDWMYKQ----ANIAIPTNRLGLA 341 (1141)
Q Consensus 291 --------y~~~~~eK~fL~k~lG~~L~~~~~-----------------~~~V~~~L~~ll~~----~~~~~~~ereG~A 341 (1141)
....+.-+.-.+++++.++....+ ...+..++..++.. .+..++..|+++.
T Consensus 376 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~ 455 (1230)
T 1u6g_C 376 SPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCF 455 (1230)
T ss_dssp HHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHH
Confidence 122344455667777777765432 23444555544443 4455666789999
Q ss_pred HHHHHHhhc-------CHHHHHHHHHHHHhhhccccchhhhccccCcccccchHhHHHHHHHHHHHHHhcCCchhHHHHH
Q 001144 342 KAMGLVAAS-------HLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARI 414 (1141)
Q Consensus 342 ~~~G~~A~~-------Hld~vL~~Le~~~k~~~~~~~~~~~~~~k~~~~~~e~~~~ks~l~l~YG~va~~ap~~~l~~rv 414 (1141)
.++|-++.. |++.++..+.+. +++++. ...++...+..++.+.....++.+.+.+
T Consensus 456 ~~L~~l~~~~~~~l~~~l~~ll~~l~~~---------------L~d~~~---~~~v~~~a~~~l~~~~~~~~~~~~~~~l 517 (1230)
T 1u6g_C 456 NMLTELVNVLPGALTQHIPVLVPGIIFS---------------LNDKSS---SSNLKIDALSCLYVILCNHSPQVFHPHV 517 (1230)
T ss_dssp HHHHHHHHHSTTTTGGGHHHHHHHHHHH---------------TTCSSS---CHHHHHHHHHHHHHHHHSSCGGGGHHHH
T ss_pred HHHHHHHHHchhhhHHHHHHHHHHHHHH---------------HcCCCC---cchHHHHHHHHHHHHHHhCCHHHHHhHH
Confidence 999877663 444444444332 233321 2357777888888888777777666666
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhhhhcCCCcCC-CCHHHHHHHHHHHhccCCCCCcCCchHHHHHH
Q 001144 415 DALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPL-KKRDQLLDYILTLMGREENDSFADSSIELLHT 493 (1141)
Q Consensus 415 e~~I~~~i~~~~~~~kd~~lK~s~l~si~~i~~al~~~~~~~~~f~f-~~k~eLl~~l~~~i~~Ep~~~L~s~~~~ll~~ 493 (1141)
+. +++.++..+. .+...++...+.++..+.+++.+.. ......| ...++++..++..++....+ + .+
T Consensus 518 ~~-llp~L~~~l~-d~~~~v~~~al~~l~~l~~~~~~~~-~~~~~~~~~~~~~ll~~ll~~l~~~d~~----~-----~v 585 (1230)
T 1u6g_C 518 QA-LVPPVVACVG-DPFYKITSEALLVTQQLVKVIRPLD-QPSSFDATPYIKDLFTCTIKRLKAADID----Q-----EV 585 (1230)
T ss_dssp TT-THHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHCCSS-SCCCCCCHHHHHHHHHHHHHHHSCSSSC----H-----HH
T ss_pred HH-HHHHHHHHHc-ccchHHHHHHHHHHHHHHHHhcCcc-cccccchHHHHHHHHHHHHHHHhccCCC----H-----HH
Confidence 53 4444554432 2344456667788888888764410 0001122 23467888888777543222 1 28
Q ss_pred HHHHHHHhhhhccc-CCCCChhHHHHHHHHhhhccccCCCCCCchHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHh
Q 001144 494 QALALSACTTLVTV-EPKLTIETRNHVMKATLGFFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQ 572 (1141)
Q Consensus 494 r~~a~~ait~L~~L-~P~l~~e~~~~ll~~clsv~~lP~~~~~~~~~l~~~l~~ll~~ll~~~~~~~~~~~~~Lq~il~~ 572 (1141)
|+.|+.++..|+.. .+.+.. .-..++......+ . ++. .-.+...++..+...... .+ -...+..++..
T Consensus 586 r~~a~~~lg~L~~~~g~~~~~-~~~~~l~~L~~~l--~---~e~---~r~~~~~al~~i~~~~~~-~~-~~~~~~~i~~~ 654 (1230)
T 1u6g_C 586 KERAISCMGQIICNLGDNLGS-DLPNTLQIFLERL--K---NEI---TRLTTVKALTLIAGSPLK-ID-LRPVLGEGVPI 654 (1230)
T ss_dssp HHHHHHHHHHHHHHTGGGCCT-HHHHHHHHHHHHT--T---SSS---HHHHHHHHHHHHTTCSSC-CC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhhh-hHHHHHHHHHHHh--c---cch---hHHHHHHHHHHHHhCccc-cc-hHHHHHHHHHH
Confidence 99999999999753 333321 2222322211111 1 111 111223333333322111 11 14567788888
Q ss_pred hhhhhcCChhHHHhhHHHHHHHHHHHHHHhccccccccCCCCCcccccchhhccccCCCCCCCccCCCchhhhhhhhHHH
Q 001144 573 IDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVI 652 (1141)
Q Consensus 573 L~pWl~S~k~~EReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~f~~~p~~~~~p~~~~~~lG~lvg 652 (1141)
+...+.++....|.-|+.+...+.+.+-.. + + ...+-.++.
T Consensus 655 L~~~l~~~~~~~r~~a~~al~~l~~~~~~~-------------------~-----------------~---~~~v~~~l~ 695 (1230)
T 1u6g_C 655 LASFLRKNQRALKLGTLSALDILIKNYSDS-------------------L-----------------T---AAMIDAVLD 695 (1230)
T ss_dssp HHHHTTSCCHHHHHHHHHHHHHHHHHCCTT-------------------C-----------------C---HHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhccccc-------------------C-----------------C---HHHHHHHHH
Confidence 888999999999999999887777632110 0 0 114455555
Q ss_pred HhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCChhhhhhhhcchhHHHHHhhcCC-CCCChhHHHHHHHHH
Q 001144 653 MYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDA-SIDPSEVFNRIVSSV 731 (1141)
Q Consensus 653 ~l~p~C~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~-~~~~~~~~~~i~~~~ 731 (1141)
.+.|...|.|.++++.+.+++..++. ........+ .+ .-+..+..+.+... .+....-+..+.+.+
T Consensus 696 ~ll~ll~~~D~~~~~~~~~~L~~l~~------~~~~~~~~~-----~~--~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l 762 (1230)
T 1u6g_C 696 ELPPLISESDMHVSQMAISFLTTLAK------VYPSSLSKI-----SG--SILNELIGLVRSPLLQGGALSAMLDFFQAL 762 (1230)
T ss_dssp TCGGGSCTTCHHHHHHHHHHHHHHTT------SCGGGGGGT-----TT--TTHHHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred HHHhhcCcchHHHHHHHHHHHHHHHH------hCchhHHHh-----HH--hHHHHHHHHHcCcccchHHHHHHHHHHHHH
Confidence 56677889999999999998887751 110000000 00 01122233223322 111111122334444
Q ss_pred HhhCC-hHHHHHHHHHHHHhccCCC-----chhHHHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhc-CcHHHHHH
Q 001144 732 CILLT-KDELVATLHSCTTAICDRT-----KQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHI-TDKHLRLE 804 (1141)
Q Consensus 732 ~k~L~-~~el~~li~tll~~L~d~~-----~~~~~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i-~~~~~r~~ 804 (1141)
...-+ ...+.+++..+++.+..+. .+....++..+..++...|.... ++++.+...+..- ..+..+..
T Consensus 763 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 837 (1230)
T 1u6g_C 763 VVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP-----AVVGQFIQDVKNSRSTDSIRLL 837 (1230)
T ss_dssp HTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSH-----HHHTTTTTTTTTTTCCHHHHHH
T ss_pred HhcCCCCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhH-----HHHHHHHHHhCCCCccHHHHHH
Confidence 33222 2345566666665554321 12235566777777776665551 2344444444321 12233332
Q ss_pred HHHHHHHhhhcccchhhHHHHhhhhcccccccccccccCCCChhhHHHHhhcCcchHHHHHHHHHHHHccCCCccCCCCC
Q 001144 805 TLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEK 884 (1141)
Q Consensus 805 ~l~ai~lLa~~h~~~Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~aLa~~~~l~~~vL~~LL~~L~~~p~~~e~~~~ 884 (1141)
++.++-.++.+. ++ +.. +.+.+.++..+...
T Consensus 838 ~l~~l~~~g~~~---------------------------~~---------~~~----~~l~~~~~~~l~~~--------- 868 (1230)
T 1u6g_C 838 ALLSLGEVGHHI---------------------------DL---------SGQ----LELKSVILEAFSSP--------- 868 (1230)
T ss_dssp HHHHHHHHHHHS---------------------------CC---------CSC----THHHHHHHHGGGCS---------
T ss_pred HHHHHHHhcccC---------------------------CC---------ccc----ccHHHHHHHHhCCC---------
Confidence 222222222110 00 000 11233333332210
Q ss_pred CCCCCCCCCcccchhhHHHHHHHHHHHHhcCCcchHHHHHHhhhHHHHHHHHHHhhhccCCCCCCCChhHHHHHHHHHHH
Q 001144 885 GDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFC 964 (1141)
Q Consensus 885 ~~~~~~~~~~~~~~~~plaAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~lL 964 (1141)
..-+-.+|..||+.+.... +..+.|.++-++ ..- ......++.|++..+
T Consensus 869 ------------~~~Vr~aAa~aLg~l~~~~-------~~~~lp~ll~~l----~~~--------~~~~~~~l~al~e~i 917 (1230)
T 1u6g_C 869 ------------SEEVKSAASYALGSISVGN-------LPEYLPFVLQEI----TSQ--------PKRQYLLLHSLKEII 917 (1230)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHT-------HHHHHHHHHHHH----HSC--------GGGHHHHHHHHHHHH
T ss_pred ------------CHHHHHHHHHHhHHHhccC-------HHHHHHHHHHHH----hcc--------chhhHHHHHHHHHHH
Confidence 0012345666666654322 223444444433 110 011234566666666
Q ss_pred HhhCChhHHHHHHh---cCCCC---chhhhHhhHHHHHHHHhhcCChhHHHHHHHHHhhhcCCcccchhHHHHHHHHhhh
Q 001144 965 ECVGDLEMRKILAR---DGEQN---DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVR 1038 (1141)
Q Consensus 965 ~~~g~~~~~~~le~---~g~W~---~~~~~~~GV~lLAram~~~~~~~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~ 1038 (1141)
...+..+...+.+. .=.|. ..+..-.-+...-..++...+ ..++-.+...+++.....|.+++..+..++.
T Consensus 918 ~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~---~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~ 994 (1230)
T 1u6g_C 918 SSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP---ETLLPRLKGYLISGSSYARSSVVTAVKFTIS 994 (1230)
T ss_dssp HSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG---GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCC
T ss_pred hcCChhhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccCh---HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 55443333222221 00011 111111111111122233333 2344455566777777778888887777776
Q ss_pred ccC-CccchHHHHHHHHhhhcCCCCchhhhhhccccCCccch---hhhhhHHHHHHHHHhhccCCCh-------------
Q 001144 1039 YSG-GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDE------------- 1101 (1141)
Q Consensus 1039 ~~~-~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~---kv~~~~~~lL~all~~l~d~~~------------- 1101 (1141)
... .....++.++..|..+++|+++.||..++.+|+.++.+ -++.+.+.+|+.+++....+++
T Consensus 995 ~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~ 1074 (1230)
T 1u6g_C 995 DHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHT 1074 (1230)
T ss_dssp SSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEE
T ss_pred cCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHhcccHHhheeeccCCcccc
Confidence 643 21123455667778899999999999999999988765 3466778899999988754443
Q ss_pred -----hHHHHHHHHHHHHhccC
Q 001144 1102 -----SVQLTAVSCLLTILKSS 1118 (1141)
Q Consensus 1102 -----~vvleam~~L~~lL~~l 1118 (1141)
++.-.|..++.++++.-
T Consensus 1075 vd~~l~~rk~a~~~~~~ll~~~ 1096 (1230)
T 1u6g_C 1075 VDDGLDIRKAAFECMYTLLDSC 1096 (1230)
T ss_dssp EETHHHHHHHHHHHHHHHHHSS
T ss_pred cCCcHHHHHHHHHHHHHHHHHH
Confidence 78889999999998874
No 2
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.25 E-value=2.2e-06 Score=114.04 Aligned_cols=932 Identities=13% Similarity=0.112 Sum_probs=460.1
Q ss_pred hhhhhcccccchhHHHHHHHhhhcCCCchhhh-cchHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhcccccCcccccce
Q 001144 3 LLNKCRLKEEHLSVGALYVLKHLLPRSSEAWH-SKRPLLLEAVKSLLDEQNLAVQKAISELIVVMASHCYLIGPSGELFV 81 (1141)
Q Consensus 3 ll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~-~k~~~i~~~vk~~l~d~~~kVr~al~~~I~ama~~~yl~~~~g~~~i 81 (1141)
|+.++.+.+...|--++.=|...++.....+. .....++..+-..+.|++.+||++-+..+..++.+. +...+
T Consensus 11 lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~------~~~~~ 84 (1230)
T 1u6g_C 11 LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKV------KEYQV 84 (1230)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTS------CHHHH
T ss_pred HHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC------CHHHH
Confidence 67889999999999888878777765433332 233466666666778999999999999998888642 11233
Q ss_pred eeeeccccccCccccccccccccCCCCCchHHHHHHHHHHHHHhccchhh------hHhhHHHHHhhcccc----cccch
Q 001144 82 EYLVRHCALSDQKKYVNESSKVKIGAFCPTELRAICEKGLLLLTITIPEM------QHILWPLLLKMIIPR----AYTSA 151 (1141)
Q Consensus 82 ~fiv~q~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~~~L~ll~ttv~~m------~~vLWP~LL~~i~p~----~yT~a 151 (1141)
++|+..+.-. . . .+...+|..+.++|..+...++.- ....||.++.++... +-...
T Consensus 85 ~~i~~~Ll~~---l-------~----d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~ 150 (1230)
T 1u6g_C 85 ETIVDTLCTN---M-------L----SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSV 150 (1230)
T ss_dssp HHHHHHHHHH---T-------T----CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHH
T ss_pred HHHHHHHHHH---h-------c----CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHH
Confidence 4444433211 0 0 023367998889888887665432 233466555555432 11223
Q ss_pred hhhHHHHHHHHHhhhcCCCCCccccccCCCCCCCHHHHHHHHHHHhcCcccchhhHHHHHHHHHhhCCCCCcchhhhHHH
Q 001144 152 AATVCRCISELCRHRSSSSNVMLSECKARDDIPNPEELFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLFWQD 231 (1141)
Q Consensus 152 l~~ick~l~~La~k~~~~~~~~~i~~~~~~~lPsp~~llaRllvl~~~P~~~~~~g~~~L~lL~~l~~~ih~~l~~~W~~ 231 (1141)
-...+.++..++.... ... .|--..++..++-.+.+|.. .--.++++.|..+........ .+.
T Consensus 151 ~~~al~~l~~~~~~~~---~~l---------~~~~~~ll~~l~~~L~~~~~--~vR~~a~~al~~l~~~~~~~~---~~~ 213 (1230)
T 1u6g_C 151 QLEALDIMADMLSRQG---GLL---------VNFHPSILTCLLPQLTSPRL--AVRKRTIIALGHLVMSCGNIV---FVD 213 (1230)
T ss_dssp HHHHHHHHHHHHHHTC---SSC---------TTTHHHHHHHHGGGGGCSSH--HHHHHHHHHHHHHTTTC-------CTT
T ss_pred HHHHHHHHHHHHHHhH---hHH---------HHHHHHHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHhcCHHH---HHH
Confidence 3334445555543321 111 13345778888888877642 223445566666666555432 445
Q ss_pred hhhhhhhcccccccCCCCcchHhhHHHHHHHHHHHhhhhhcc--chHHHHHHHHHHhhhccCCCChhhHHHHHHHHHHHH
Q 001144 232 EIPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAESLDVVQE--TDWLISLGNAFTEQYVLYTPDDDHSALLHRCLGILL 309 (1141)
Q Consensus 232 ~IP~Ll~~L~~~~~~~~~~~~q~~We~~Ll~fL~~sl~~i~d--~~W~~~L~~el~~ql~~y~~~~~eK~fL~k~lG~~L 309 (1141)
.+|.|+++|.+..+ .. .+..- ++.+..-...+.+ ......+...+.+.+. .+.+.-+..-+.++|...
T Consensus 214 ~l~~l~~~L~~~~~---~~-~r~~a----~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~--d~~~~vR~~a~~~l~~l~ 283 (1230)
T 1u6g_C 214 LIEHLLSELSKNDS---MS-TTRTY----IQCIAAISRQAGHRIGEYLEKIIPLVVKFCN--VDDDELREYCIQAFESFV 283 (1230)
T ss_dssp HHHHHHHHHHHTCS---SC-SCTTH----HHHHHHHHHHSSGGGTTSCTTHHHHHHHHHS--SCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCc---hh-HHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHH
Confidence 68888888854321 01 01111 1111111111110 0111222333322222 233444455556666665
Q ss_pred hhcCCh--hHHHHHHHHHHHhcccCC-------------------------------------ccchhhHHHHHHHHhhc
Q 001144 310 QKVADR--NYVCDKIDWMYKQANIAI-------------------------------------PTNRLGLAKAMGLVAAS 350 (1141)
Q Consensus 310 ~~~~~~--~~V~~~L~~ll~~~~~~~-------------------------------------~~ereG~A~~~G~~A~~ 350 (1141)
..+... .++..-+..++....+.. ..-|+..+.+++-.+..
T Consensus 284 ~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~ 363 (1230)
T 1u6g_C 284 RRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVST 363 (1230)
T ss_dssp HCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTT
T ss_pred HHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHh
Confidence 554321 233333333333222110 00144444444443331
Q ss_pred CHHHHHHHHHHHHhhhccccchhhhccccCcccccchHhHHHHHHHHHHHHHhcCC------------------chhHHH
Q 001144 351 HLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDIHAALALMYGYAAKYAP------------------STVIEA 412 (1141)
Q Consensus 351 Hld~vL~~Le~~~k~~~~~~~~~~~~~~k~~~~~~e~~~~ks~l~l~YG~va~~ap------------------~~~l~~ 412 (1141)
--+. +..+... .+......+++++ +.+|.+.+-+++.+..... ...+..
T Consensus 364 ~~~~----~~~~~~~----l~~~l~~~l~d~~-----~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (1230)
T 1u6g_C 364 RHEM----LPEFYKT----VSPALISRFKERE-----ENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQS 430 (1230)
T ss_dssp CCTT----HHHHHTT----THHHHHSTTSCSS-----SHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHH
T ss_pred chhH----HHHHHHH----HHHHHHHHcCCCc-----hHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHH
Confidence 1000 0111110 0111223444443 3577777777776654321 112211
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCHHHHHHHHHHHhccCCCCCcCCchHHHHH
Q 001144 413 RIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLH 492 (1141)
Q Consensus 413 rve~~I~~~i~~~~~~~kd~~lK~s~l~si~~i~~al~~~~~~~~~f~f~~k~eLl~~l~~~i~~Ep~~~L~s~~~~ll~ 492 (1141)
.+ ..|+..+.+. ++..++..+.+.+.++..+.... + .+.-.+-++++..++..++.+.. .+ +
T Consensus 431 ~l-~~ll~~l~~~-l~~~~~~vr~~~~~~L~~l~~~~-~------~~l~~~l~~ll~~l~~~L~d~~~----~~-----~ 492 (1230)
T 1u6g_C 431 QV-PNIVKALHKQ-MKEKSVKTRQCCFNMLTELVNVL-P------GALTQHIPVLVPGIIFSLNDKSS----SS-----N 492 (1230)
T ss_dssp HT-THHHHHHHHH-TTCSCHHHHHHHHHHHHHHHHHS-T------TTTGGGHHHHHHHHHHHTTCSSS----CH-----H
T ss_pred Hh-hHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHc-h------hhhHHHHHHHHHHHHHHHcCCCC----cc-----h
Confidence 11 1223322332 23456678888777777776653 2 11113457899999998875532 12 2
Q ss_pred HHHHHHHHhhhhcccCCCCChhHHHHHHHHhh-hccccCCCCCCchHHHHHHHHHHHHHHHhhcCC----CCCCCHHHHH
Q 001144 493 TQALALSACTTLVTVEPKLTIETRNHVMKATL-GFFALPNDPIDVVNPLIDNLITLLCAILLTSGE----DGRSRADQLL 567 (1141)
Q Consensus 493 ~r~~a~~ait~L~~L~P~l~~e~~~~ll~~cl-sv~~lP~~~~~~~~~l~~~l~~ll~~ll~~~~~----~~~~~~~~Lq 567 (1141)
+|..++.++..+.+- .+.+.....+...+ .++.....+. . ..-......+..++...+. .++.-..-++
T Consensus 493 v~~~a~~~l~~~~~~---~~~~~~~~~l~~llp~L~~~l~d~~--~-~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~ 566 (1230)
T 1u6g_C 493 LKIDALSCLYVILCN---HSPQVFHPHVQALVPPVVACVGDPF--Y-KITSEALLVTQQLVKVIRPLDQPSSFDATPYIK 566 (1230)
T ss_dssp HHHHHHHHHHHHHHS---SCGGGGHHHHTTTHHHHHHHHTCSS--H-HHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHh---CCHHHHHhHHHHHHHHHHHHHcccc--h-HHHHHHHHHHHHHHHHhcCcccccccchHHHHH
Confidence 778888888877652 12222222222222 2222111111 1 1112223444445433221 0011234567
Q ss_pred HHHHhhhhhh--cCChhHHHhhHHHHHHHHHHHHHHhccccccccCCCCCcccccchhhccccCCCCCCCccCCCchhhh
Q 001144 568 HILRQIDQYV--SSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREAL 645 (1141)
Q Consensus 568 ~il~~L~pWl--~S~k~~EReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~f~~~p~~~~~p~~~~~ 645 (1141)
.++..+..|+ .+....-|+.|..+...+...+-.. +. .
T Consensus 567 ~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~---------------------------~~-------------~ 606 (1230)
T 1u6g_C 567 DLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDN---------------------------LG-------------S 606 (1230)
T ss_dssp HHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGG---------------------------CC-------------T
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCch---------------------------hh-------------h
Confidence 8889999999 5566678999998877776622211 10 1
Q ss_pred hhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCChhhhhhhhcchhHHHHHhhcCCCCCChhHHH
Q 001144 646 CLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFN 725 (1141)
Q Consensus 646 ~lG~lvg~l~p~C~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~ 725 (1141)
.++.++..+.....+ +.+|..+..++..+. . ..+ ..+.+... .+++..+...+..++..+-.
T Consensus 607 ~~~~~l~~L~~~l~~--e~~r~~~~~al~~i~---~----~~~---~~~~~~~~------~~i~~~L~~~l~~~~~~~r~ 668 (1230)
T 1u6g_C 607 DLPNTLQIFLERLKN--EITRLTTVKALTLIA---G----SPL---KIDLRPVL------GEGVPILASFLRKNQRALKL 668 (1230)
T ss_dssp HHHHHHHHHHHHTTS--SSHHHHHHHHHHHHT---T----CSS---CCCCHHHH------HHHHHHHHHHTTSCCHHHHH
T ss_pred hHHHHHHHHHHHhcc--chhHHHHHHHHHHHH---h----Ccc---ccchHHHH------HHHHHHHHHHHHhCCHHHHH
Confidence 345555555555443 458888888887664 1 011 00101111 12222222223333333222
Q ss_pred -------HHHHHHHhhCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhcC-
Q 001144 726 -------RIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHIT- 797 (1141)
Q Consensus 726 -------~i~~~~~k~L~~~el~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i~- 797 (1141)
.+++.....++.+++..++..++..+.+.+......+-..|..+++..+..+... .+.++..++..+.+-.
T Consensus 669 ~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~-~~~~l~~~~~~l~~~~~ 747 (1230)
T 1u6g_C 669 GTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKI-SGSILNELIGLVRSPLL 747 (1230)
T ss_dssp HHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGT-TTTTHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHh-HHhHHHHHHHHHcCccc
Confidence 2333333445556666666555555667666677888888999998777666333 6777788877776544
Q ss_pred cHHHHHHHHHHHHHhhhccc-----chhhHHHHhhhhcccccccccccccCCCChhhHHHHhhcCcchHHHHHHHHHHHH
Q 001144 798 DKHLRLETLGAISCLAENTN-----SKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISAL 872 (1141)
Q Consensus 798 ~~~~r~~~l~ai~lLa~~h~-----~~Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~aLa~~~~l~~~vL~~LL~~L 872 (1141)
...+...++..+..++...+ ++++. .|+ ..+...+. .. . -+++. ..+.+.+..++...
T Consensus 748 ~~~~~~~l~~~~~~l~~~~~~~~~~~~ll~-~l~----~~~~~~~~---~~---~--~~~~~----~~~a~~i~~~~~~~ 810 (1230)
T 1u6g_C 748 QGGALSAMLDFFQALVVTGTNNLGYMDLLR-MLT----GPVYSQST---AL---T--HKQSY----YSIAKCVAALTRAC 810 (1230)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCSHHHHHH-HHS----TTTTTC----------C--CHHHH----HHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHHhcCCCCCCHHHHHH-HHh----ccccCCCC---cc---c--cchhh----HHHHHHHHHHHHhc
Confidence 45566666667777776543 44443 444 11100000 00 0 01110 11222333332221
Q ss_pred ccCCCccCCCCCCCCCCCCCCcccchhhHHHHHHHHHHHHhcCCcchHHHHHHhhhHHHHHHHHHHhhhccCCCCCCCCh
Q 001144 873 NQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEP 952 (1141)
Q Consensus 873 ~~~p~~~e~~~~~~~~~~~~~~~~~~~~plaAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P 952 (1141)
... ..+.- ..+...-..+....-.-..|..+|+|+-... .. ..+|+++-+++..+... ...
T Consensus 811 ~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~--~~-----~~~~~l~~~~~~~l~~~--------~~~ 871 (1230)
T 1u6g_C 811 PKE--GPAVV--GQFIQDVKNSRSTDSIRLLALLSLGEVGHHI--DL-----SGQLELKSVILEAFSSP--------SEE 871 (1230)
T ss_dssp CCC--SHHHH--TTTTTTTTTTTCCHHHHHHHHHHHHHHHHHS--CC-----CSCTHHHHHHHHGGGCS--------CHH
T ss_pred chh--hHHHH--HHHHHHhCCCCccHHHHHHHHHHHHHhcccC--CC-----cccccHHHHHHHHhCCC--------CHH
Confidence 100 00000 0000000000001111234555667752211 12 12467665555444221 111
Q ss_pred hH-HHHHHHHHHHHhhCChh-----HHHHHHhcCCCCchhhhHhhHHHHHHHHhhcCC----hhHHHHHHHHHhhhcCCc
Q 001144 953 LR-AILTSFQAFCECVGDLE-----MRKILARDGEQNDKEKWINLIGDVAGCVSIKRP----KEVQTICLILTKSINRQQ 1022 (1141)
Q Consensus 953 ~~-~aleAlk~lL~~~g~~~-----~~~~le~~g~W~~~~~~~~GV~lLAram~~~~~----~~~~~i~~~L~~~L~s~~ 1022 (1141)
++ .+..|+=.+.. |... +.+.++ ++.+..+....++..+.. .... +....|+..|...+.+.+
T Consensus 872 Vr~aAa~aLg~l~~--~~~~~~lp~ll~~l~--~~~~~~~~~l~al~e~i~---~~~~~~~~~~~~~i~~~L~~~~~~~~ 944 (1230)
T 1u6g_C 872 VKSAASYALGSISV--GNLPEYLPFVLQEIT--SQPKRQYLLLHSLKEIIS---SASVVGLKPYVENIWALLLKHCECAE 944 (1230)
T ss_dssp HHHHHHHHHHHHHH--HTHHHHHHHHHHHHH--SCGGGHHHHHHHHHHHHH---SSCSTTTHHHHHHHHHHHTTCCCCSS
T ss_pred HHHHHHHHhHHHhc--cCHHHHHHHHHHHHh--ccchhhHHHHHHHHHHHh---cCChhhHHhhHHHHHHHHHHHhcCcc
Confidence 22 23334433321 2221 112222 222222233344433332 2222 334555555666666556
Q ss_pred ccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccch---hhhhhHHHHHHHHHhhccCC
Q 001144 1023 RFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDL 1099 (1141)
Q Consensus 1023 ~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~---kv~~~~~~lL~all~~l~d~ 1099 (1141)
+.-|.+++..+..+..... +.++-.|.+.+.|+++.+|..++..++.+... .+..|.+.+++.++.+++|.
T Consensus 945 ~~~r~~~a~~lg~l~~~~~------~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~ 1018 (1230)
T 1u6g_C 945 EGTRNVVAECLGKLTLIDP------ETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDP 1018 (1230)
T ss_dssp TTHHHHHHHHHHHHHHSSG------GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSS
T ss_pred hhhHHHHHHHHhhhhccCh------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCC
Confidence 6667777778888776542 23556788899999999999999988877543 45567788889999999999
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCccchH
Q 001144 1100 DESVQLTAVSCLLTILKSSSKDAVEPIL 1127 (1141)
Q Consensus 1100 ~~~vvleam~~L~~lL~~l~~~~~~~~l 1127 (1141)
|.+|...|+.+|..+.+.-+ ..+.+.+
T Consensus 1019 ~~~vr~~a~~~l~~~~~~~~-~~~~~~l 1045 (1230)
T 1u6g_C 1019 DLNVRRVALVTFNSAAHNKP-SLIRDLL 1045 (1230)
T ss_dssp STHHHHHHHHHHHHHHHHCG-GGTGGGH
T ss_pred cHHHHHHHHHHHHHHHhcCh-HhHHHHH
Confidence 88999999999999887654 3344443
No 3
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.23 E-value=3.4e-07 Score=116.29 Aligned_cols=589 Identities=12% Similarity=0.113 Sum_probs=324.8
Q ss_pred HHHHHHhcccC-CccchhhHHHHHHHHhhc----------CHHHHHHHHHHHHhhhccccchhhhccccCcccccchHhH
Q 001144 322 IDWMYKQANIA-IPTNRLGLAKAMGLVAAS----------HLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDI 390 (1141)
Q Consensus 322 L~~ll~~~~~~-~~~ereG~A~~~G~~A~~----------Hld~vL~~Le~~~k~~~~~~~~~~~~~~k~~~~~~e~~~~ 390 (1141)
+..++...+.. ++..|+|...++|..... |.+.++..+... +.+.. ....+
T Consensus 136 l~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~---------------l~~~~---~~~~v 197 (861)
T 2bpt_A 136 MKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQG---------------AQSTE---TSKAV 197 (861)
T ss_dssp HHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHH---------------HSTTC---CCHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHh---------------hcCCC---CCHHH
Confidence 33444433334 566788888888877653 333333333222 11210 12468
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHH-HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCHH-HHH
Q 001144 391 HAALALMYGYAAKYAPSTVIEARID-ALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRD-QLL 468 (1141)
Q Consensus 391 ks~l~l~YG~va~~ap~~~l~~rve-~~I~~~i~~~~~~~kd~~lK~s~l~si~~i~~al~~~~~~~~~f~f~~k~-eLl 468 (1141)
|.+.+-++|.++.+.....- ...+ ..++. .+.......++.+|...++++..++..... .|. .+-. .++
T Consensus 198 r~~al~~l~~~~~~~~~~~~-~~~~~~~ll~-~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~------~~~-~~l~~~l~ 268 (861)
T 2bpt_A 198 RLAALNALADSLIFIKNNME-REGERNYLMQ-VVCEATQAEDIEVQAAAFGCLCKIMSKYYT------FMK-PYMEQALY 268 (861)
T ss_dssp HHHHHHHHHHHGGGCHHHHT-SHHHHHHHHH-HHHHHHTCSCHHHHHHHHHHHHHHHHHHGG------GCH-HHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHcc-ChhHHHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHHHHHHH------HHH-HHHHHHHH
Confidence 88888888887655432210 0001 12333 333344567888999999988888775321 111 1122 566
Q ss_pred HHHHHHhccCCCCCcCCchHHHHHHHHHHHHHhhhhcccCCC-------------CChh----HHHHHHHHhhhccccCC
Q 001144 469 DYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPK-------------LTIE----TRNHVMKATLGFFALPN 531 (1141)
Q Consensus 469 ~~l~~~i~~Ep~~~L~s~~~~ll~~r~~a~~ait~L~~L~P~-------------l~~e----~~~~ll~~clsv~~lP~ 531 (1141)
..+...+... + + ++|..|+.++..++...+. .... .-..++..++..+.-+.
T Consensus 269 ~~~~~~~~~~--~----~-----~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~ 337 (861)
T 2bpt_A 269 ALTIATMKSP--N----D-----KVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN 337 (861)
T ss_dssp HHHHHHTTCS--S----H-----HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHcCC--c----H-----HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6666655432 1 2 2889999999988765321 1111 11334444443332222
Q ss_pred CCC-CchHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHhhhhhhcCChhHHHhhHHHHHHHHHHHHHHhcccccccc
Q 001144 532 DPI-DVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCAL 610 (1141)
Q Consensus 532 ~~~-~~~~~l~~~l~~ll~~ll~~~~~~~~~~~~~Lq~il~~L~pWl~S~k~~EReRA~~~~~~lL~~~~~~~~~~~c~~ 610 (1141)
++. ++.-....+..+.|..+....+. +.+..++..+...+.+.....|+.|+.+...+.. . |
T Consensus 338 ~d~~d~~~~~r~~a~~~L~~l~~~~~~------~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~----~-----~-- 400 (861)
T 2bpt_A 338 EDPEDDDWNVSMSAGACLQLFAQNCGN------HILEPVLEFVEQNITADNWRNREAAVMAFGSIMD----G-----P-- 400 (861)
T ss_dssp CC-CCCCCHHHHHHHHHHHHHHHHHGG------GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS----S-----S--
T ss_pred cccccccCcHHHHHHHHHHHHHHHccH------hHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHc----C-----C--
Confidence 211 11123444455555555555432 3456677888888888877788888776433321 1 0
Q ss_pred CCCCCcccccchhhccccCCCCCCCccCCCchhhhhhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 001144 611 GCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSS 690 (1141)
Q Consensus 611 ~~~~~~~~~~~l~~~~~~~f~~~p~~~~~p~~~~~~lG~lvg~l~p~C~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~ 690 (1141)
.... + ...+..++..+...+.|+++.||..|..++..+.....
T Consensus 401 ------------~~~~---~-------------~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--------- 443 (861)
T 2bpt_A 401 ------------DKVQ---R-------------TYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVA--------- 443 (861)
T ss_dssp ------------CHHH---H-------------HHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHG---------
T ss_pred ------------CHHH---H-------------HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhh---------
Confidence 0000 0 11456677777778899999999998887766542111
Q ss_pred CCCChhhhhhhhcchhHHHHHhhcCCCCCChhHHHHHHHHHHhhCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHH
Q 001144 691 SGIDLELSYGALSSLEDVIAILRSDASIDPSEVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFV 770 (1141)
Q Consensus 691 ~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~k~L~~~el~~li~tll~~L~d~~~~~~~~A~~~L~~~l 770 (1141)
... .+...+..++-.+++++.|. .....+|+..+..+.
T Consensus 444 -----------------------~~~------------------~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~ 481 (861)
T 2bpt_A 444 -----------------------ESI------------------DPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLV 481 (861)
T ss_dssp -----------------------GGS------------------CTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHH
T ss_pred -----------------------hhc------------------CCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 000 00111223333445556664 444577888888888
Q ss_pred Hhhc----cccchhhHhHHHHHHHHHhhhcC-cHHHHHHHHHHHHHhhhcccchhhHHHHhhhhcccccccccccccCCC
Q 001144 771 TKRG----NELSETDVSRTTQSLLSAAVHIT-DKHLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGW 845 (1141)
Q Consensus 771 ~~~g----~~l~e~dV~eIv~~i~~~L~~i~-~~~~r~~~l~ai~lLa~~h~~~Vv~~~LL~~~~~~~~~~d~~~~~~pl 845 (1141)
+..+ ..+..- ++.|+..+...+.... ++.+|..+++++..++...+.++. ..+
T Consensus 482 ~~~~~~~~~~l~~~-~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~--~~~------------------- 539 (861)
T 2bpt_A 482 EQLAEATPSPIYNF-YPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVA--ETS------------------- 539 (861)
T ss_dssp HHHSSSSSCGGGGG-HHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGH--HHH-------------------
T ss_pred HhcccccchhhHHH-HHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhH--HHH-------------------
Confidence 8765 456334 8899999999887643 478999999999999998776543 222
Q ss_pred ChhhHHHHhhcCcchHHHHHHHHHHHHccCCCccCCCCCCCCCCCCCCcccchhhHHHHHHHHHHHHhcCCcchHHHHHH
Q 001144 846 PMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEK 925 (1141)
Q Consensus 846 P~d~~W~aLa~~~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~plaAt~aL~Ell~~~~~~~~~av~~ 925 (1141)
..++..++..|....+.+...- + ...... ..-.-..+..+|..+...-|+.+..
T Consensus 540 ----------------~~l~~~l~~~l~~~~~~~~~i~-~----~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~---- 593 (861)
T 2bpt_A 540 ----------------ASISTFVMDKLGQTMSVDENQL-T----LEDAQS-LQELQSNILTVLAAVIRKSPSSVEP---- 593 (861)
T ss_dssp ----------------HHHHHHHHHHHHHHTTSCGGGC-C----HHHHHH-HHHHHHHHHHHHHHHHHHCGGGTGG----
T ss_pred ----------------HHHHHHHHHHHHHHHhhhcccC-C----hhhHHH-HHHHHHHHHHHHHHHHHHhhhhhHH----
Confidence 1222333333332111110000 0 000000 0001134666676666655333322
Q ss_pred hhhHHHHHHHHHHhhhccCCCCCCCChhHHHHHHHHHHHHhhCChhHHHHHHhcCCCCchhhhHhhHHHHHHHHhhcCCh
Q 001144 926 SYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSIKRPK 1005 (1141)
Q Consensus 926 ~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~lL~~~g~~~~~~~le~~g~W~~~~~~~~GV~lLAram~~~~~~ 1005 (1141)
+.++++-.++.-+... ++ . .-.+.....+..++.++...-.+
T Consensus 594 ~~~~l~~~l~~~l~~~---------~~-----------------~------------~v~~~~~~~l~~l~~~~~~~~~~ 635 (861)
T 2bpt_A 594 VADMLMGLFFRLLEKK---------DS-----------------A------------FIEDDVFYAISALAASLGKGFEK 635 (861)
T ss_dssp GHHHHHHHHHHHHHST---------TG-----------------G------------GTHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHHHHHHHHHHHHccC---------CC-----------------C------------cHHHHHHHHHHHHHHHHhhhHHH
Confidence 2333333332222110 00 0 00011222333344443333334
Q ss_pred hHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccC-CccchHHHHHHHHhhhcCCCC--chhhhhhccccCCccch---
Q 001144 1006 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSG-GFDSLLEQMVEALCRHVSDES--PTVRGLCLRGLVQIPSI--- 1079 (1141)
Q Consensus 1006 ~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~-~~~~l~~~~l~~L~~~l~D~~--~~VR~lslrGLgnl~~~--- 1079 (1141)
+++.++..+...++.....-|..|+..+..+..... ......+.++..+.+.+.|++ +.||..+++++|.++..
T Consensus 636 ~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~ 715 (861)
T 2bpt_A 636 YLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA 715 (861)
T ss_dssp HHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhh
Confidence 667777777777766666677888888888877654 223345668888888888876 89999999999998764
Q ss_pred hhhhhHHHHHHHHHhhccCCC-----------hhHHHHHHHHHHHHhccCCC--CCccchHHHH
Q 001144 1080 HIHQYATQVLSVILALLDDLD-----------ESVQLTAVSCLLTILKSSSK--DAVEPILLNL 1130 (1141)
Q Consensus 1080 kv~~~~~~lL~all~~l~d~~-----------~~vvleam~~L~~lL~~l~~--~~~~~~l~~i 1130 (1141)
.+..|.+.+++.++..+.... ..+...++.++..++..++. ..+.+++-.+
T Consensus 716 ~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i 779 (861)
T 2bpt_A 716 DFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTI 779 (861)
T ss_dssp GGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 677788999999998887321 23556778888888887774 3344444433
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.22 E-value=3.3e-07 Score=117.15 Aligned_cols=681 Identities=12% Similarity=0.080 Sum_probs=348.3
Q ss_pred hhhhcccccchhHHHHHHHhhhcCCCchhh-hcchHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhcccccCcccc-cce
Q 001144 4 LNKCRLKEEHLSVGALYVLKHLLPRSSEAW-HSKRPLLLEAVKSLLDEQNLAVQKAISELIVVMASHCYLIGPSGE-LFV 81 (1141)
Q Consensus 4 l~~l~~~~E~~Rvg~L~vlrhlins~~~~~-~~k~~~i~~~vk~~l~d~~~kVr~al~~~I~ama~~~yl~~~~g~-~~i 81 (1141)
+..+.+.+..+|--+...||+.|.+.-..+ ++-+..|-..+-..+.|++..||+..+++|..++.+++ ++.| .++
T Consensus 54 l~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~---~~~wp~ll 130 (852)
T 4fdd_A 54 LTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGE---LQNWPDLL 130 (852)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTT---TTTCTTHH
T ss_pred HhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcC---ccccHHHH
Confidence 334456788999999999999997633333 22344555554455678999999999999999999874 3445 356
Q ss_pred eeeeccccccCccccccccccccCCCCCchHHHHHHHHHHHHHhccchhh---------hHhhHHHHHhhcccccccchh
Q 001144 82 EYLVRHCALSDQKKYVNESSKVKIGAFCPTELRAICEKGLLLLTITIPEM---------QHILWPLLLKMIIPRAYTSAA 152 (1141)
Q Consensus 82 ~fiv~q~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~~~L~ll~ttv~~m---------~~vLWP~LL~~i~p~~yT~al 152 (1141)
.++++.+.- ....+|+.+..+|..+....+.. -+.+.|.+++++-.++. ..-
T Consensus 131 ~~L~~~l~~------------------~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~-~vR 191 (852)
T 4fdd_A 131 PKLCSLLDS------------------EDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSP-KIR 191 (852)
T ss_dssp HHHHHHHSC------------------SSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSH-HHH
T ss_pred HHHHHHHcC------------------CCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCH-HHH
Confidence 666653311 12356777777777766655432 24578888887664321 122
Q ss_pred hhHHHHHHHHHhhhcCCCCCccccccCCCCCCCHHHHHHHHHHHhcCcccchhhHHHHHHHHHhhCCCCCcchhhhHHHh
Q 001144 153 ATVCRCISELCRHRSSSSNVMLSECKARDDIPNPEELFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLFWQDE 232 (1141)
Q Consensus 153 ~~ick~l~~La~k~~~~~~~~~i~~~~~~~lPsp~~llaRllvl~~~P~~~~~~g~~~L~lL~~l~~~ih~~l~~~W~~~ 232 (1141)
...++++..++... . +.-.+.-..++-.++-++.++... --.++++.|..+.......+.+.-+.-
T Consensus 192 ~~A~~aL~~~~~~~---~---------~~~~~~~~~~l~~l~~~~~d~~~~--vr~~a~~~L~~l~~~~~~~~~~~l~~l 257 (852)
T 4fdd_A 192 SHAVACVNQFIISR---T---------QALMLHIDSFIENLFALAGDEEPE--VRKNVCRALVMLLEVRMDRLLPHMHNI 257 (852)
T ss_dssp HHHHHHHHTTTTTT---C---------HHHHTSHHHHHHHHHHHHTCCCHH--HHHHHHHHHHHHHHHCHHHHGGGHHHH
T ss_pred HHHHHHHHHHHhcc---c---------HHHHHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 22233333222100 0 000112234555555555554321 123333333333332222233333334
Q ss_pred hhhhhhcccccccCCCCcchHhhHHHHHHHHHHHhhhhhc----cchHHHHHHHHHHhhhc-----------cCCCCh--
Q 001144 233 IPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAESLDVVQ----ETDWLISLGNAFTEQYV-----------LYTPDD-- 295 (1141)
Q Consensus 233 IP~Ll~~L~~~~~~~~~~~~q~~We~~Ll~fL~~sl~~i~----d~~W~~~L~~el~~ql~-----------~y~~~~-- 295 (1141)
+|.+++.+.+.+ ..-...-+.|+....+... -......+...+.+.+. -..+++
T Consensus 258 ~~~l~~~~~~~~---------~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~ 328 (852)
T 4fdd_A 258 VEYMLQRTQDQD---------ENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGG 328 (852)
T ss_dssp HHHHHHHHTCSS---------HHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--------
T ss_pred HHHHHHHccCCc---------HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccc
Confidence 555555444321 1122222333322111000 00112222222222220 000011
Q ss_pred -------hhHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhcccCCccchhhHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 001144 296 -------DHSALLHRCLGILLQKVADRNYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASHLDAVLEMLKGILDNIGQ 368 (1141)
Q Consensus 296 -------~eK~fL~k~lG~~L~~~~~~~~V~~~L~~ll~~~~~~~~~ereG~A~~~G~~A~~Hld~vL~~Le~~~k~~~~ 368 (1141)
.-+..-.+++|..-.... ...+..-+..+.+..++.+...|++.+.++|-.+.+.-+.+-..++.+..
T Consensus 329 dd~~~~~~vr~~a~~~L~~la~~~~-~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~---- 403 (852)
T 4fdd_A 329 DDTISDWNLRKCSAAALDVLANVYR-DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIP---- 403 (852)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHH----
T ss_pred ccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH----
Confidence 114455667776555443 33344333333333344567889999999999998765433222222222
Q ss_pred ccchhhhccccCcccccchHhHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Q 001144 369 SLFQRLLSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRA 448 (1141)
Q Consensus 369 ~~~~~~~~~~k~~~~~~e~~~~ks~l~l~YG~va~~ap~~~l~~rve~~I~~~i~~~~~~~kd~~lK~s~l~si~~i~~a 448 (1141)
..+..++|.+ ..+|.+..-+.|.++...+++.....++ .+++.++..+ ...++.++.+...++..++..
T Consensus 404 ----~l~~~l~d~~-----~~Vr~~a~~~l~~l~~~~~~~~~~~~~~-~ll~~L~~~L-~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 404 ----HLIQCLSDKK-----ALVRSITCWTLSRYAHWVVSQPPDTYLK-PLMTELLKRI-LDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp ----HHHHHTTCSS-----HHHHHHHHHHHHHTHHHHHHSCTTTTHH-HHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHcCCCC-----HHHHHHHHHHHHHHHHHhccchHHHHHH-HHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHH
Confidence 2233444443 4699999999999887654322111111 2334344433 235778999999999999887
Q ss_pred HhhhhhcCCCcCCCCHHHHHHHHHHHhccCCCCCcCCchHHHHHHHHHHHHHhhhhcc-cCCCCChhH-HHHHHHHhhhc
Q 001144 449 VINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVT-VEPKLTIET-RNHVMKATLGF 526 (1141)
Q Consensus 449 l~~~~~~~~~f~f~~k~eLl~~l~~~i~~Ep~~~L~s~~~~ll~~r~~a~~ait~L~~-L~P~l~~e~-~~~ll~~clsv 526 (1141)
..+. - .. .-++++..++..++... + . ....++.++.++.. +.+.+...+ -..++...+..
T Consensus 473 ~~~~--l-~~----~l~~ll~~L~~~l~~~~-~----~------~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~ 534 (852)
T 4fdd_A 473 ACTE--L-VP----YLAYILDTLVFAFSKYQ-H----K------NLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQK 534 (852)
T ss_dssp HGGG--G-GG----GHHHHHHHHHHHHHHCC-H----H------HHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHH
T ss_pred hhHh--h-Hh----HHHHHHHHHHHHHHHhC-h----H------HHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHH
Confidence 5432 1 12 34789998888886432 1 1 33456777777764 444443322 23333333332
Q ss_pred cccCCCCCCchHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHhhhhhhc-------------CChhHHHhhHHHHHH
Q 001144 527 FALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVS-------------SPVEYQRRRSCLAVY 593 (1141)
Q Consensus 527 ~~lP~~~~~~~~~l~~~l~~ll~~ll~~~~~~~~~~~~~Lq~il~~L~pWl~-------------S~k~~EReRA~~~~~ 593 (1141)
+..-..+......+++.+..+...+=..... --+.-+..+++.+...+. .+...-|..|+..+.
T Consensus 535 ~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~---~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~ 611 (852)
T 4fdd_A 535 WNMLKDEDKDLFPLLECLSSVATALQSGFLP---YCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLS 611 (852)
T ss_dssp HHHSCTTCTTHHHHHHHHHHHHHHHGGGGHH---HHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHH
T ss_pred HHhcccccHHHHHHHHHHHHHHHHHhHhHHH---HHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHH
Confidence 2222222223333444444443332111100 001112223344443321 112223555555554
Q ss_pred HHHHHHHHhccccccccCCCCCcccccchhhccccCCCCCCCccCCCchhhhhh--hhHHHHhhcCccCCChhHHHHHHH
Q 001144 594 EMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCL--GNRVIMYLPRCADTDSEVRKISAQ 671 (1141)
Q Consensus 594 ~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~f~~~p~~~~~p~~~~~~l--G~lvg~l~p~C~D~~~~ir~~A~~ 671 (1141)
.+.+.+-.+ |. +.+ ..++..+.-.+.|++++||+.|..
T Consensus 612 ~l~~~l~~~---------------------------~~-------------~~~~~~~~~~~l~~~l~~~~~~vr~~a~~ 651 (852)
T 4fdd_A 612 GLAEGLGGN---------------------------IE-------------QLVARSNILTLMYQCMQDKMPEVRQSSFA 651 (852)
T ss_dssp HHHHHHGGG---------------------------GH-------------HHHHTCCHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHhHh---------------------------HH-------------HHhcCCcHHHHHHHHhCCCChhHHHHHHH
Confidence 444422111 10 011 233444444568899999999999
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCChhhhhhhhcchhHHHHHhhcCCCCCChhHHH-------HHHHHHHhhCChHHHHHHH
Q 001144 672 ILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFN-------RIVSSVCILLTKDELVATL 744 (1141)
Q Consensus 672 ~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~-------~i~~~~~k~L~~~el~~li 744 (1141)
++.-+... .. +.. .. -+..+....-..+..++.++-. .++..++..+.|. +..++
T Consensus 652 ~l~~l~~~---~~---~~~--------~~---~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~-~~~il 713 (852)
T 4fdd_A 652 LLGDLTKA---CF---QHV--------KP---CIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPY-IPMVL 713 (852)
T ss_dssp HHHHHHHH---CG---GGT--------GG---GHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGG-THHHH
T ss_pred HHHHHHHH---hh---HHH--------HH---HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHH-HHHHH
Confidence 98876511 10 000 00 1223333233344444444432 3333333332222 23444
Q ss_pred HHHHHhccCCCc--hhHHHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhcccchhhH
Q 001144 745 HSCTTAICDRTK--QSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVF 822 (1141)
Q Consensus 745 ~tll~~L~d~~~--~~~~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~h~~~Vv~ 822 (1141)
..++.-|.+++. ...+.|+..+..+....+..+... +++++...+..|+.+.+..-|..+.++++.+.+++|+.++.
T Consensus 714 ~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~-l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~ 792 (852)
T 4fdd_A 714 HQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPM-LQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQ 792 (852)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGG-HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGG
T ss_pred HHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCcc-HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhHHH
Confidence 455555555543 333777888888887755555445 89999999999999999999999999999999999999885
Q ss_pred HHHh
Q 001144 823 NEVL 826 (1141)
Q Consensus 823 ~~LL 826 (1141)
.|.
T Consensus 793 -~~~ 795 (852)
T 4fdd_A 793 -DFI 795 (852)
T ss_dssp -GHH
T ss_pred -HHH
Confidence 666
No 5
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.06 E-value=1.1e-06 Score=112.25 Aligned_cols=559 Identities=12% Similarity=0.083 Sum_probs=317.5
Q ss_pred HhHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCHHHH
Q 001144 388 DDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQL 467 (1141)
Q Consensus 388 ~~~ks~l~l~YG~va~~ap~~~l~~rve~~I~~~i~~~~~~~kd~~lK~s~l~si~~i~~al~~~~~~~~~f~f~~k~eL 467 (1141)
..+|..+..+.+.++.+.+++.-. +++..+... ....++..|...+.++..|++........ .+....-..+
T Consensus 104 ~~vr~~~a~~i~~ia~~~~~~~wp-----~ll~~L~~~-l~~~~~~~r~~al~~L~~i~~~~~~~~~~--~~~~~~~~~i 175 (852)
T 4fdd_A 104 PLIRATVGILITTIASKGELQNWP-----DLLPKLCSL-LDSEDYNTCEGAFGALQKICEDSAEILDS--DVLDRPLNIM 175 (852)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTCT-----THHHHHHHH-HSCSSHHHHHHHHHHHHHHHHHHTTHHHH--CSSSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCccccH-----HHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHhHHHhch--hhhcchHHHH
Confidence 368999999999999887554321 122233333 34567889999999999998876543111 1222334566
Q ss_pred HHHHHHHhccCCCCCcCCchHHHHHHHHHHHHHhhhhcccCCCCChhHHHHHHHHhhhccccCCCCCCchHHHHHHHHHH
Q 001144 468 LDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATLGFFALPNDPIDVVNPLIDNLITL 547 (1141)
Q Consensus 468 l~~l~~~i~~Ep~~~L~s~~~~ll~~r~~a~~ait~L~~L~P~l~~e~~~~ll~~clsv~~lP~~~~~~~~~l~~~l~~l 547 (1141)
+..++..++.+ ++ .+|..|+.++..+++..| +.+..
T Consensus 176 l~~l~~~l~~~------~~-----~vR~~A~~aL~~~~~~~~----------------------------~~~~~----- 211 (852)
T 4fdd_A 176 IPKFLQFFKHS------SP-----KIRSHAVACVNQFIISRT----------------------------QALML----- 211 (852)
T ss_dssp HHHHTTTTTCS------SH-----HHHHHHHHHHHTTTTTTC----------------------------HHHHT-----
T ss_pred HHHHHHHhcCC------CH-----HHHHHHHHHHHHHHhccc----------------------------HHHHH-----
Confidence 66666655521 12 288999998877754321 00101
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHhhhhhhcCChhHHHhhHHHHHHHHHHHHHHhccccccccCCCCCcccccchhhccc
Q 001144 548 LCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVL 627 (1141)
Q Consensus 548 l~~ll~~~~~~~~~~~~~Lq~il~~L~pWl~S~k~~EReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~ 627 (1141)
.++.+++.+...+.++....|..|+.+...+.+.+.+. +.
T Consensus 212 -----------------~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~-------------------~~---- 251 (852)
T 4fdd_A 212 -----------------HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR-------------------LL---- 251 (852)
T ss_dssp -----------------SHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHH-------------------HG----
T ss_pred -----------------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHH-------------------HH----
Confidence 11223333333445677788999999988777754432 10
Q ss_pred cCCCCCCCccCCCchhhhhhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCChhhhhhhhc-c--
Q 001144 628 GNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALS-S-- 704 (1141)
Q Consensus 628 ~~f~~~p~~~~~p~~~~~~lG~lvg~l~p~C~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~-~-- 704 (1141)
+.+..++..+.-...|+++.||..|.+.+..+..-... ++ ....+- +.....+. .
T Consensus 252 -----------------~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~-~~---~~~~~~-~~l~p~ll~~l~ 309 (852)
T 4fdd_A 252 -----------------PHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC-KD---VLVRHL-PKLIPVLVNGMK 309 (852)
T ss_dssp -----------------GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH-HH---HHTTTH-HHHHHHHHHHTS
T ss_pred -----------------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH-HH---HHHHHH-HHHHHHHHHHcC
Confidence 14556666666667899999999999987665310000 00 000000 00011000 0
Q ss_pred -hhHHHHHhhcCCCCC--------ChhH---HHHHHHHHHhhCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHh
Q 001144 705 -LEDVIAILRSDASID--------PSEV---FNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTK 772 (1141)
Q Consensus 705 -l~~l~~~~~~~~~~~--------~~~~---~~~i~~~~~k~L~~~el~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~ 772 (1141)
.++-..+.+.+...+ +..+ --.....+++.++..-+..++-.+.+.+.+.+...-.+|+.++..+.+.
T Consensus 310 ~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~ 389 (852)
T 4fdd_A 310 YSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEG 389 (852)
T ss_dssp CCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTT
T ss_pred CcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 000000001110000 0001 1122233444444333333444455566777666668888888888877
Q ss_pred hccccchhhHhHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhcccchhhHHHHhhhhcccccccccccccCCCChhhHHH
Q 001144 773 RGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFH 852 (1141)
Q Consensus 773 ~g~~l~e~dV~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~h~~~Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~ 852 (1141)
.+..+... +++++..+...+.. .++.+|..+..++.-++........
T Consensus 390 ~~~~~~~~-l~~~l~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~------------------------------- 436 (852)
T 4fdd_A 390 CMQGMIPY-LPELIPHLIQCLSD-KKALVRSITCWTLSRYAHWVVSQPP------------------------------- 436 (852)
T ss_dssp THHHHGGG-HHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTHHHHHHSCT-------------------------------
T ss_pred chHHHHHH-HHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhccchH-------------------------------
Confidence 66666333 88899988888854 5689999999998887765332111
Q ss_pred HhhcCcchHHHHHHHHHHHHccCCCccCCCCCCCCCCCCCCcccchhhHHHHHHHHHHHHhcCCcchHHHHHHhhhHHHH
Q 001144 853 AFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLA 932 (1141)
Q Consensus 853 aLa~~~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~plaAt~aL~Ell~~~~~~~~~av~~~fp~Lf~ 932 (1141)
......++..|+..|+...+ -+--+|..||..+....+ ..+..++|+++-
T Consensus 437 -----~~~~~~ll~~L~~~L~d~~~---------------------~vr~~a~~aL~~l~~~~~----~~l~~~l~~ll~ 486 (852)
T 4fdd_A 437 -----DTYLKPLMTELLKRILDSNK---------------------RVQEAACSAFATLEEEAC----TELVPYLAYILD 486 (852)
T ss_dssp -----TTTHHHHHHHHHHHHTCSSH---------------------HHHHHHHHHHHHHHHHHG----GGGGGGHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHhCCCH---------------------HHHHHHHHHHHHHHHHhh----HhhHhHHHHHHH
Confidence 11234566677776652110 012356666666654432 234556777777
Q ss_pred HHHHHHhhhccCCCCCCCChhHHHHHHHHHHHHhhCChh--------HHHHHHhcCCCC-------chhhhHhhHHHHHH
Q 001144 933 ALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLE--------MRKILARDGEQN-------DKEKWINLIGDVAG 997 (1141)
Q Consensus 933 aLL~ql~~~~~~~~~~~~~P~~~aleAlk~lL~~~g~~~--------~~~~le~~g~W~-------~~~~~~~GV~lLAr 997 (1141)
.|+.-+.... ..-...+.+|+.++....|..- +...+-. -|+ ......+.+..+++
T Consensus 487 ~L~~~l~~~~-------~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~--~~~~l~d~~~~~~~~~~~l~~i~~ 557 (852)
T 4fdd_A 487 TLVFAFSKYQ-------HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQ--KWNMLKDEDKDLFPLLECLSSVAT 557 (852)
T ss_dssp HHHHHHHHCC-------HHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHH--HHHHSCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-------hHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHH--HHHhcccccHHHHHHHHHHHHHHH
Confidence 6665553211 0112457788888776655321 1111110 122 12235566667777
Q ss_pred HHhhcCChhHHHHHHHHHhhhcC-----------------CcccchhHHHHHHHHhhhccC-CccchH--HHHHHHHhhh
Q 001144 998 CVSIKRPKEVQTICLILTKSINR-----------------QQRFQREAAAAALSEFVRYSG-GFDSLL--EQMVEALCRH 1057 (1141)
Q Consensus 998 am~~~~~~~~~~i~~~L~~~L~s-----------------~~~~qRi~a~af~sELL~~~~-~~~~l~--~~~l~~L~~~ 1057 (1141)
++...-.+.++.++..++..++. +...-+.++.-.+..+.+.-. ...... ..++..+..+
T Consensus 558 ~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~ 637 (852)
T 4fdd_A 558 ALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQC 637 (852)
T ss_dssp HHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHH
T ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHH
Confidence 76654445566665544444332 112235555555555554432 122222 3488899999
Q ss_pred cCCCCchhhhhhccccCCccch---hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCCCCccchHHHHHHH
Q 001144 1058 VSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVR 1133 (1141)
Q Consensus 1058 l~D~~~~VR~lslrGLgnl~~~---kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~l~~~~~~~~l~~ia~r 1133 (1141)
+.|+++.||.-+..-+|.++.. ++..|.+.+++.++..+++.+..+...|..+++.+...++. ++.|+.-.+..+
T Consensus 638 l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~-~~~p~~~~il~~ 715 (852)
T 4fdd_A 638 MQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI-EMQPYIPMVLHQ 715 (852)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG-GGGGGTHHHHHH
T ss_pred hCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhH-hHHHHHHHHHHH
Confidence 9999999999999999988654 77889999999999999776668888899999998888765 466665555444
No 6
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.96 E-value=3.1e-05 Score=98.40 Aligned_cols=612 Identities=12% Similarity=0.082 Sum_probs=325.5
Q ss_pred CccchhhHHHHHHHHhhc--------CHHHHHHHHHHHHhhhccccchhhhccccCcccccchHhHHHHHHHHHHHHHhc
Q 001144 333 IPTNRLGLAKAMGLVAAS--------HLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDIHAALALMYGYAAKY 404 (1141)
Q Consensus 333 ~~~ereG~A~~~G~~A~~--------Hld~vL~~Le~~~k~~~~~~~~~~~~~~k~~~~~~e~~~~ks~l~l~YG~va~~ 404 (1141)
++..|++...++|.+... |++.++..|....+ +.. ....+|...+-+++.++.+
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~---------------~~~---~~~~vr~~a~~~l~~~~~~ 204 (876)
T 1qgr_A 143 TEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMR---------------KEE---PSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHS---------------TTC---SCHHHHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhc---------------CCC---CCHHHHHHHHHHHHHHHHH
Confidence 456688888888877643 33444433333222 211 1245778888888888766
Q ss_pred CCchhHHHHHH-HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCHHHHHHHHHHHhccCCCCCc
Q 001144 405 APSTVIEARID-ALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSF 483 (1141)
Q Consensus 405 ap~~~l~~rve-~~I~~~i~~~~~~~kd~~lK~s~l~si~~i~~al~~~~~~~~~f~f~~k~eLl~~l~~~i~~Ep~~~L 483 (1141)
.+...- ...+ ..++..+ .......++.++.+.++++..+...-.. .-.+| + ...++..+...++.+.
T Consensus 205 ~~~~~~-~~~~~~~il~~l-~~~~~~~~~~vr~~a~~~l~~l~~~~~~---~~~~~-~--~~~l~~~~~~~~~~~~---- 272 (876)
T 1qgr_A 205 TKANFD-KESERHFIMQVV-CEATQCPDTRVRVAALQNLVKIMSLYYQ---YMETY-M--GPALFAITIEAMKSDI---- 272 (876)
T ss_dssp CHHHHT-SHHHHHHHHHHH-HHHTTCSSHHHHHHHHHHHHHHHHHSGG---GCHHH-H--TTTHHHHHHHHHTCSS----
T ss_pred HHHHHH-hHHHHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHHHHHhHH---HHHHH-H--HHHHHHHHHHHhcCCc----
Confidence 443211 0001 1233322 2333456777888888888888775221 10011 1 0156676666654321
Q ss_pred CCchHHHHHHHHHHHHHhhhhcccC-------------------CCCChh--HHHHHHHHhhhccccCCCC-CCchHHHH
Q 001144 484 ADSSIELLHTQALALSACTTLVTVE-------------------PKLTIE--TRNHVMKATLGFFALPNDP-IDVVNPLI 541 (1141)
Q Consensus 484 ~s~~~~ll~~r~~a~~ait~L~~L~-------------------P~l~~e--~~~~ll~~clsv~~lP~~~-~~~~~~l~ 541 (1141)
+ .+|..|+..+..+++-. |....- .-.+++..++..+.-..++ +++.....
T Consensus 273 --~-----~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r 345 (876)
T 1qgr_A 273 --D-----EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPC 345 (876)
T ss_dssp --H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHH
T ss_pred --h-----HHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHH
Confidence 2 27888998888887542 111111 1123444333222211111 11111233
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHhhhhhhcCChhHHHhhHHHHHHHHHHHHHHhccccccccCCCCCcccccc
Q 001144 542 DNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQ 621 (1141)
Q Consensus 542 ~~l~~ll~~ll~~~~~~~~~~~~~Lq~il~~L~pWl~S~k~~EReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~ 621 (1141)
.+...++..+....+. ..+..++..+..++.++....|+.|+.+...+.. . |
T Consensus 346 ~~a~~~l~~l~~~~~~------~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~----~-----~------------- 397 (876)
T 1qgr_A 346 KAAGVCLMLLATCCED------DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE----G-----P------------- 397 (876)
T ss_dssp HHHHHHHHHHHHHHGG------GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS----S-----S-------------
T ss_pred HHHHHHHHHHHHHCcH------hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHc----C-----C-------------
Confidence 3445555555554432 2366788888889988888888888876433221 1 0
Q ss_pred hhhccccCCCCCCCccCCCchhhhhhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCChhhhhhh
Q 001144 622 IDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGA 701 (1141)
Q Consensus 622 l~~~~~~~f~~~p~~~~~p~~~~~~lG~lvg~l~p~C~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~ 701 (1141)
.... + -..+..++..+.....|+++.||..|..++..+... ... .
T Consensus 398 -~~~~---~-------------~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~---~~~---~------------ 442 (876)
T 1qgr_A 398 -EPSQ---L-------------KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL---LPE---A------------ 442 (876)
T ss_dssp -CHHH---H-------------HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH---CGG---G------------
T ss_pred -CHHH---H-------------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh---Cch---h------------
Confidence 0000 0 014555666666667899999999999998877521 100 0
Q ss_pred hcchhHHHHHhhcCCCCCChhHHHHHHHHHHhhCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhc-------
Q 001144 702 LSSLEDVIAILRSDASIDPSEVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRG------- 774 (1141)
Q Consensus 702 l~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~k~L~~~el~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g------- 774 (1141)
. . ....+..++-.++.+|.|. ......|+..|..+.+..+
T Consensus 443 --------------~--~----------------~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~ 489 (876)
T 1qgr_A 443 --------------A--I----------------NDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVAD 489 (876)
T ss_dssp --------------T--S----------------STTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred --------------c--c----------------cHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhcccccc
Confidence 0 0 0001223344455566664 3334667777777777654
Q ss_pred -------cccchhhHhHHHHHHHHHhhhcC--cHHHHHHHHHHHHHhhhcccch-------hhHHHHhhhhccccccccc
Q 001144 775 -------NELSETDVSRTTQSLLSAAVHIT--DKHLRLETLGAISCLAENTNSK-------IVFNEVLATAGKDIVTKDI 838 (1141)
Q Consensus 775 -------~~l~e~dV~eIv~~i~~~L~~i~--~~~~r~~~l~ai~lLa~~h~~~-------Vv~~~LL~~~~~~~~~~d~ 838 (1141)
..+..- ++.|+..+...+.... ...+|..+++++..+++.-..+ ++. .++..+... ..+.
T Consensus 490 ~~~~~~~~~l~~~-~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~-~l~~~l~~~-~~~~- 565 (876)
T 1qgr_A 490 DQEEPATYCLSSS-FELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTL-VIMERLQQV-LQME- 565 (876)
T ss_dssp SCCCCCCCSSTTT-HHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHH-HHHHHHHHH-HTTT-
T ss_pred ccccccchhhhHh-HHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHH-HHHHHHHHH-HHHH-
Confidence 235334 8889999998887653 4678899999999998865532 221 222111100 0000
Q ss_pred ccccCCCCh-h------------hHHHHhhcC------cchHHHHHHHHHHHHccCCCccCCCCCCCCCCCCCCcccchh
Q 001144 839 SRLRGGWPM-Q------------DAFHAFSQH------AVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDD 899 (1141)
Q Consensus 839 ~~~~~plP~-d------------~~W~aLa~~------~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~ 899 (1141)
.....- | .+|..+... .+....++..++..++.... + . .
T Consensus 566 ---~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-------~------~------~ 623 (876)
T 1qgr_A 566 ---SHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAG-------S------G------G 623 (876)
T ss_dssp ---TSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC------------C------C------H
T ss_pred ---hccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccC-------C------C------C
Confidence 000000 1 134433322 23445666777766653210 0 0 1
Q ss_pred hHHHHHHHHHHHHhcCCcchHHHHHHhhhHHHHHHHHHHhhhccCCCCCCCCh--hHHHHHHHHHHHHhhCC------hh
Q 001144 900 ILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEP--LRAILTSFQAFCECVGD------LE 971 (1141)
Q Consensus 900 ~plaAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P--~~~aleAlk~lL~~~g~------~~ 971 (1141)
....|..++..+....|..+.+-+..++|.|+. .+... .+| ...+++++..+....|. .+
T Consensus 624 v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~----~l~~~--------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 691 (876)
T 1qgr_A 624 VQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGI----GLKNY--------AEYQVCLAAVGLVGDLCRALQSNIIPFCDE 691 (876)
T ss_dssp HHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH----HHHHC--------TTHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHcCc--------chHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 133456666666554332444444444443333 33221 012 34577777777776653 22
Q ss_pred HHHHHHh-cCCC--C--chhhhHhhHHHHHHHHhhcCChhHHHHHHHHHhhhcCCcc-----------cchhHHHHHHHH
Q 001144 972 MRKILAR-DGEQ--N--DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQR-----------FQREAAAAALSE 1035 (1141)
Q Consensus 972 ~~~~le~-~g~W--~--~~~~~~~GV~lLAram~~~~~~~~~~i~~~L~~~L~s~~~-----------~qRi~a~af~sE 1035 (1141)
++..+-. -... + -.......+..+++++-..-.+.++.++..+...++...+ .-|..+.-.+.+
T Consensus 692 i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~ 771 (876)
T 1qgr_A 692 VMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTG 771 (876)
T ss_dssp HHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 2222211 1111 1 2234555566666665544345677777777776654321 334445555565
Q ss_pred hhhccC-----------CccchHHHHHHHHhhhcCCC--CchhhhhhccccCCccch----hhhhh-HHHHHHHHHh-hc
Q 001144 1036 FVRYSG-----------GFDSLLEQMVEALCRHVSDE--SPTVRGLCLRGLVQIPSI----HIHQY-ATQVLSVILA-LL 1096 (1141)
Q Consensus 1036 LL~~~~-----------~~~~l~~~~l~~L~~~l~D~--~~~VR~lslrGLgnl~~~----kv~~~-~~~lL~all~-~l 1096 (1141)
++.... .....++.++..+.....|+ +..||..++..||.+... .+..| .+.+++.++. ++
T Consensus 772 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l 851 (876)
T 1qgr_A 772 IVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGR 851 (876)
T ss_dssp HHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHh
Confidence 554421 12345566777776666787 789999999999988654 23444 4567888888 88
Q ss_pred cCCChhHHHHHHHHHHHHh
Q 001144 1097 DDLDESVQLTAVSCLLTIL 1115 (1141)
Q Consensus 1097 ~d~~~~vvleam~~L~~lL 1115 (1141)
+|.+..+...|..+++.+-
T Consensus 852 ~~~~~~~r~~a~~a~~~~~ 870 (876)
T 1qgr_A 852 RSKTNKAKTLARWATKELR 870 (876)
T ss_dssp HCSCHHHHHHHHHHHHHHH
T ss_pred hcCCHhHHHHHHHHHHHHH
Confidence 8888888888887777765
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.88 E-value=7.2e-06 Score=104.04 Aligned_cols=566 Identities=11% Similarity=0.136 Sum_probs=310.7
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCHHHHHHHHHHHhccCCCCCcCCchHHHHHHHHHHHHHhhhhcc-cC
Q 001144 430 RHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVT-VE 508 (1141)
Q Consensus 430 kd~~lK~s~l~si~~i~~al~~~~~~~~~f~f~~k~eLl~~l~~~i~~Ep~~~L~s~~~~ll~~r~~a~~ait~L~~-L~ 508 (1141)
.++.++...-+++..|++.-.+. .+-++++..+...++.+. + + .+|..|+.++..+++ +.
T Consensus 107 ~~~~vr~~~~~~l~~i~~~~~p~---------~~w~~ll~~L~~~l~~~~-~----~-----~~r~~al~~l~~l~~~~~ 167 (861)
T 2bpt_A 107 IEPRIANAAAQLIAAIADIELPH---------GAWPELMKIMVDNTGAEQ-P----E-----NVKRASLLALGYMCESAD 167 (861)
T ss_dssp SSHHHHHHHHHHHHHHHHHHGGG---------TCCHHHHHHHHHHTSTTS-C----H-----HHHHHHHHHHHHHHHTSS
T ss_pred CchHHHHHHHHHHHHHHHhhCcc---------cccHHHHHHHHHHHhcCC-C----H-----HHHHHHHHHHHHHHHcCC
Confidence 45566777777777776653221 124789999998886531 1 2 278999999999986 44
Q ss_pred CCC--ChhHHHHHHHHhhhccccCCCCCCchHHHHHHHHHHHHHHHh---hcCCCCCCCHHHHHHHHHhhhhhhcCChhH
Q 001144 509 PKL--TIETRNHVMKATLGFFALPNDPIDVVNPLIDNLITLLCAILL---TSGEDGRSRADQLLHILRQIDQYVSSPVEY 583 (1141)
Q Consensus 509 P~l--~~e~~~~ll~~clsv~~lP~~~~~~~~~l~~~l~~ll~~ll~---~~~~~~~~~~~~Lq~il~~L~pWl~S~k~~ 583 (1141)
|.. -......++..++..+.-+ +.+ ...-.+..+.+..++. .... .......+++.+...+.++...
T Consensus 168 ~~~~~~~~~~~~ll~~l~~~l~~~-~~~---~~vr~~al~~l~~~~~~~~~~~~----~~~~~~~ll~~l~~~~~~~~~~ 239 (861)
T 2bpt_A 168 PQSQALVSSSNNILIAIVQGAQST-ETS---KAVRLAALNALADSLIFIKNNME----REGERNYLMQVVCEATQAEDIE 239 (861)
T ss_dssp TTSSTTGGGHHHHHHHHHHHHSTT-CCC---HHHHHHHHHHHHHHGGGCHHHHT----SHHHHHHHHHHHHHHHTCSCHH
T ss_pred hhhhHHHHHHHHHHHHHHHhhcCC-CCC---HHHHHHHHHHHHHHHHHHHHHcc----ChhHHHHHHHHHHHHhcCCCHH
Confidence 432 1233455555544333211 001 1222222333333321 1111 0112345677777777888888
Q ss_pred HHhhHHHHHHHHHHHHHHhccccccccCCCCCcccccchhhccccCCCCCCCccCCCchhhhhhh-hHHHHhhcCccCCC
Q 001144 584 QRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLG-NRVIMYLPRCADTD 662 (1141)
Q Consensus 584 EReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~f~~~p~~~~~p~~~~~~lG-~lvg~l~p~C~D~~ 662 (1141)
.|+.|+.+...+...+.+. | .+.+. .++..+...+.|++
T Consensus 240 ~r~~a~~~l~~l~~~~~~~---------------------------~-------------~~~l~~~l~~~~~~~~~~~~ 279 (861)
T 2bpt_A 240 VQAAAFGCLCKIMSKYYTF---------------------------M-------------KPYMEQALYALTIATMKSPN 279 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGG---------------------------C-------------HHHHHHTHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHH---------------------------H-------------HHHHHHHHHHHHHHHHcCCc
Confidence 9999999888777754421 1 01455 66666666778999
Q ss_pred hhHHHHHHHHHHHHHHHHhhCC---CCCCCCCCCChhhhhhhhcc-hhHHHHHhhcCCC---CCChhHH---HHHHHHHH
Q 001144 663 SEVRKISAQILDQLFSISLSLP---RPVGSSSGIDLELSYGALSS-LEDVIAILRSDAS---IDPSEVF---NRIVSSVC 732 (1141)
Q Consensus 663 ~~ir~~A~~~i~~Ll~I~l~~~---~~~~~~~~~~~~~~~~~l~~-l~~l~~~~~~~~~---~~~~~~~---~~i~~~~~ 732 (1141)
..+|..|.+.+..+........ ...+..+..........+.. +..++...+.... .++..+- ......++
T Consensus 280 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~ 359 (861)
T 2bpt_A 280 DKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFA 359 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHH
Confidence 9999999999887764321000 00000000000000000000 0112222221110 1111221 12233344
Q ss_pred hhCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhc-cccchhhHhHHHHHHHHHhhhcCcHHHHHHHHHHHHH
Q 001144 733 ILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRG-NELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISC 811 (1141)
Q Consensus 733 k~L~~~el~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g-~~l~e~dV~eIv~~i~~~L~~i~~~~~r~~~l~ai~l 811 (1141)
..++..-+..++-.+.+.+.+.+...-.+|...+..+.+..+ ..+ ...++.++..+...+.. .++.+|..+..++..
T Consensus 360 ~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~-~~~l~~il~~l~~~l~d-~~~~vr~~a~~~l~~ 437 (861)
T 2bpt_A 360 QNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQR-TYYVHQALPSILNLMND-QSLQVKETTAWCIGR 437 (861)
T ss_dssp HHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHH-HHHHHHHHHHHHHGGGC-SCHHHHHHHHHHHHH
T ss_pred HHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHH
Confidence 444433344555556666777766666888888888775443 334 22277888888887765 468899888887777
Q ss_pred hhhcccchhhHHHHhhhhcccccccccccccCCCChhhHHHHhhcCcchHHHHHHHHHHHHccCCCccCCCCCCCCCCCC
Q 001144 812 LAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHS 891 (1141)
Q Consensus 812 La~~h~~~Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~aLa~~~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~ 891 (1141)
++......+. .......++..|+..++..+
T Consensus 438 l~~~~~~~~~-----------------------------------~~~~~~~~l~~l~~~l~~~~--------------- 467 (861)
T 2bpt_A 438 IADSVAESID-----------------------------------PQQHLPGVVQACLIGLQDHP--------------- 467 (861)
T ss_dssp HHHHHGGGSC-----------------------------------TTTTHHHHHHHHHHHHTSCH---------------
T ss_pred HHHHhhhhcC-----------------------------------CHHHHHHHHHHHHHHhccCh---------------
Confidence 6654322110 01123344455555443210
Q ss_pred CCcccchhhHHHHHHHHHHHHhcCCcchHHHHHHhhhHHHHHHHHHHhhhccCCCCCCCCh--hHHHHHHHHHHHHhhCC
Q 001144 892 ADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEP--LRAILTSFQAFCECVGD 969 (1141)
Q Consensus 892 ~~~~~~~~~plaAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P--~~~aleAlk~lL~~~g~ 969 (1141)
+ ...+|..||..+...-++.....+..++|+++-.|+--+... ..++ -..+.+|+..+....+.
T Consensus 468 ---~----v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~-------d~~~~vr~~a~~al~~l~~~~~~ 533 (861)
T 2bpt_A 468 ---K----VATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRI-------DNEFNARASAFSALTTMVEYATD 533 (861)
T ss_dssp ---H----HHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCS-------CCGGGHHHHHHHHHHHHHHHCCG
T ss_pred ---H----HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCc-------CcchHHHHHHHHHHHHHHHHcch
Confidence 0 123455555554443210001233456666666554444210 1112 23577888887777664
Q ss_pred hh----------HHHHHHhcCCCC----c----------hhhhHhhHHHHHHHHhhcCChhHHHHHHHHHhhhcCCcc-c
Q 001144 970 LE----------MRKILARDGEQN----D----------KEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQR-F 1024 (1141)
Q Consensus 970 ~~----------~~~~le~~g~W~----~----------~~~~~~GV~lLAram~~~~~~~~~~i~~~L~~~L~s~~~-~ 1024 (1141)
.. ++..+...-.++ + .....+.+..+++.+-..-.++.+.++..+...+++... .
T Consensus 534 ~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 613 (861)
T 2bpt_A 534 TVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAF 613 (861)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCc
Confidence 31 112222111110 0 012233344444444333336788888888888877654 5
Q ss_pred chhHHHHHHHHhhhccC-CccchHHHHHHHHhhhcCCCCchhhhhhccccCCccch---hhhhhHHHHHHHHHhhccCCC
Q 001144 1025 QREAAAAALSEFVRYSG-GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLD 1100 (1141)
Q Consensus 1025 qRi~a~af~sELL~~~~-~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~---kv~~~~~~lL~all~~l~d~~ 1100 (1141)
-|..+...++-+..... ........++..|.+.++++++.||..++..++.+... ++..|.+.+++.++..+.+.+
T Consensus 614 v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 693 (861)
T 2bpt_A 614 IEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPN 693 (861)
T ss_dssp THHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCcc
Confidence 56666666666665543 22334566888888888899999999999988887554 667788999999999998754
Q ss_pred --hhHHHHHHHHHHHHhccCCCCCccchHHH
Q 001144 1101 --ESVQLTAVSCLLTILKSSSKDAVEPILLN 1129 (1141)
Q Consensus 1101 --~~vvleam~~L~~lL~~l~~~~~~~~l~~ 1129 (1141)
.++...++.+++.+....++. +.+++-.
T Consensus 694 ~~~~vr~~~~~~l~~l~~~~~~~-~~~~l~~ 723 (861)
T 2bpt_A 694 ARRELKPAVLSVFGDIASNIGAD-FIPYLND 723 (861)
T ss_dssp CCTTHHHHHHHHHHHHHHHHGGG-GHHHHHH
T ss_pred ccHhhhHHHHHHHHHHHHHhhhh-HHHHHHH
Confidence 678888899999888887653 4444433
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.81 E-value=0.00025 Score=90.08 Aligned_cols=332 Identities=12% Similarity=0.089 Sum_probs=196.5
Q ss_pred HHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhcccc-chhhHhHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhcccch
Q 001144 741 VATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNEL-SETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSK 819 (1141)
Q Consensus 741 ~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l-~e~dV~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~h~~~ 819 (1141)
.+++-.++..+.|++.....+|+..+..+.+..+..+ ....++.++..+...|.. .+.+|..+..++..++....+.
T Consensus 407 ~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~~~ 484 (876)
T 1qgr_A 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA--EPRVASNVCWAFSSLAEAAYEA 484 (876)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhhc
Confidence 3455566777788876666888889999988766543 122288899999998876 3888998898888887653210
Q ss_pred -hhHHHHhhhhcccccccccccccCCCChhhHHHHhhcCcchHHHHHHHHHHHHccCCCccCCCCCCCCCCCCCCcccch
Q 001144 820 -IVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDD 898 (1141)
Q Consensus 820 -Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~aLa~~~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~ 898 (1141)
... ..+. .. +-+ .-.+....++..|+..+..... +. ..
T Consensus 485 ~~~~------------~~~~---~~--~~~-------~l~~~~~~il~~L~~~l~~~~~--~~----------~~----- 523 (876)
T 1qgr_A 485 ADVA------------DDQE---EP--ATY-------CLSSSFELIVQKLLETTDRPDG--HQ----------NN----- 523 (876)
T ss_dssp TSCT------------TSCC---CC--CCC-------SSTTTHHHHHHHHHHHTTSCSS--CS----------TT-----
T ss_pred cccc------------cccc---cc--cch-------hhhHhHHHHHHHHHHHHhCcCc--ch----------hh-----
Confidence 000 0000 00 000 0012345677788877763210 00 00
Q ss_pred hhHHHHHHHHHHHHhcCCcchHHHHHHhhhHHHHHHHHHHhhhccCCCC--CCCCh------hHHHHHHHHHHHHhhCCh
Q 001144 899 DILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASS--GQHEP------LRAILTSFQAFCECVGDL 970 (1141)
Q Consensus 899 ~~plaAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~--~~~~P------~~~aleAlk~lL~~~g~~ 970 (1141)
.-.++..++..+....|++....+..++|.++- .+...+..... ...+| ...+..++..+....|..
T Consensus 524 -~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~----~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~ 598 (876)
T 1qgr_A 524 -LRSSAYESLMEIVKNSAKDCYPAVQKTTLVIME----RLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQ 598 (876)
T ss_dssp -HHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHH----HHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHH
T ss_pred -HHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHH----HHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChh
Confidence 124577888888877765555555555555444 33333221110 01222 245667777777666611
Q ss_pred h-------HHHHHHh----cC-CCCchhhhHhhHHHHHHHHhhcCChhHHHHHHHHHhhhcCC-cccchhHHHHHHHHhh
Q 001144 971 E-------MRKILAR----DG-EQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQ-QRFQREAAAAALSEFV 1037 (1141)
Q Consensus 971 ~-------~~~~le~----~g-~W~~~~~~~~GV~lLAram~~~~~~~~~~i~~~L~~~L~s~-~~~qRi~a~af~sELL 1037 (1141)
+ ++..+-. .. .|.-.+.-...+..++..+-..-.+.+..++..+.+.++.. ...-|..|+..+.++.
T Consensus 599 ~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~ 678 (876)
T 1qgr_A 599 DALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLC 678 (876)
T ss_dssp HHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence 1 1111111 10 11111222333444444433333457888888899998776 5556777888888888
Q ss_pred hccC-CccchHHHHHHHHhhhcCC--CCchhhhhhccccCCccch---hhhhhHHHHHHHHHhhccCCC----h------
Q 001144 1038 RYSG-GFDSLLEQMVEALCRHVSD--ESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLD----E------ 1101 (1141)
Q Consensus 1038 ~~~~-~~~~l~~~~l~~L~~~l~D--~~~~VR~lslrGLgnl~~~---kv~~~~~~lL~all~~l~d~~----~------ 1101 (1141)
.... ......+.++..|.+.+.+ .+..+|..++..+|+++.. ....|.+.+++.+..++.++. +
T Consensus 679 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~ 758 (876)
T 1qgr_A 679 RALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYL 758 (876)
T ss_dssp HHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHH
Confidence 7654 2333456788888888887 4678999999999999763 566788999999998886542 1
Q ss_pred -hHHHHHHHHHHHHhccCCC
Q 001144 1102 -SVQLTAVSCLLTILKSSSK 1120 (1141)
Q Consensus 1102 -~vvleam~~L~~lL~~l~~ 1120 (1141)
.+...++.++..++..++.
T Consensus 759 ~~~r~~~~~~~~~i~~~~~~ 778 (876)
T 1qgr_A 759 NELRESCLEAYTGIVQGLKG 778 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHcc
Confidence 4555566677766666544
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.81 E-value=7.3e-06 Score=99.01 Aligned_cols=475 Identities=13% Similarity=0.061 Sum_probs=258.6
Q ss_pred HhHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCHHHH
Q 001144 388 DDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQL 467 (1141)
Q Consensus 388 ~~~ks~l~l~YG~va~~ap~~~l~~rve~~I~~~i~~~~~~~kd~~lK~s~l~si~~i~~al~~~~~~~~~f~f~~k~eL 467 (1141)
..+|...+-+.+.++...|++.+. ..++. ++..+.+..+...|.+....+..+...+ + . ..++++
T Consensus 101 ~~vR~~a~~~L~~l~~~~~~~~~~----~~l~~-~l~~l~~~~~~~~R~~a~~~l~~~~~~~------~-~---~~~~~l 165 (588)
T 1b3u_A 101 TVVRDKAVESLRAISHEHSPSDLE----AHFVP-LVKRLAGGDWFTSRTSACGLFSVCYPRV------S-S---AVKAEL 165 (588)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHH----HTHHH-HHHHHHTCSSHHHHHHHGGGHHHHTTTS------C-H---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHH----HHHHH-HHHHHhcCCCcHHHHHHHHHHHHHHHhc------C-H---HHHHHH
Confidence 468888889999999999886542 23333 4445555556677776666554433211 1 1 136788
Q ss_pred HHHHHHHhccCCCCCcCCchHHHHHHHHHHHHHhhhhcccCCCCChhHHHHHHHHhhhccccCCCCCCchHHHHHHHHHH
Q 001144 468 LDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATLGFFALPNDPIDVVNPLIDNLITL 547 (1141)
Q Consensus 468 l~~l~~~i~~Ep~~~L~s~~~~ll~~r~~a~~ait~L~~L~P~l~~e~~~~ll~~clsv~~lP~~~~~~~~~l~~~l~~l 547 (1141)
+..+..+++.+. + .+|..|..++..+.+.-|. +
T Consensus 166 ~~~l~~l~~d~~------~-----~VR~~a~~~l~~l~~~~~~---~--------------------------------- 198 (588)
T 1b3u_A 166 RQYFRNLCSDDT------P-----MVRRAAASKLGEFAKVLEL---D--------------------------------- 198 (588)
T ss_dssp HHHHHHHHTCSC------H-----HHHHHHHHHHHHHHHTSCH---H---------------------------------
T ss_pred HHHHHHHhCCCC------H-----HHHHHHHHHHHHHHHHhcH---H---------------------------------
Confidence 888887775431 2 2889998888877643111 0
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHhhhhhhcCChhHHHhhHHHHHHHHHHHHHHhccccccccCCCCCcccccchhhccc
Q 001144 548 LCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVL 627 (1141)
Q Consensus 548 l~~ll~~~~~~~~~~~~~Lq~il~~L~pWl~S~k~~EReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~ 627 (1141)
.....++..+...+.++....|..|+.+...+...+-..
T Consensus 199 ----------------~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~------------------------- 237 (588)
T 1b3u_A 199 ----------------NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE------------------------- 237 (588)
T ss_dssp ----------------HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH-------------------------
T ss_pred ----------------hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH-------------------------
Confidence 011112233333445667788888888866554411100
Q ss_pred cCCCCCCCccCCCchhhhhhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCChhhhhhhhcchhH
Q 001144 628 GNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLED 707 (1141)
Q Consensus 628 ~~f~~~p~~~~~p~~~~~~lG~lvg~l~p~C~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~ 707 (1141)
.....++-.+.-.+.|++..+|..|.+++..+....- ++
T Consensus 238 -----------------~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~--------------~~---------- 276 (588)
T 1b3u_A 238 -----------------DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG--------------PE---------- 276 (588)
T ss_dssp -----------------HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC--------------HH----------
T ss_pred -----------------HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhC--------------cc----------
Confidence 0122233333334579999999999999887752100 00
Q ss_pred HHHHhhcCCCCCChhHHHHHHHHHHhhCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccch-hhHhHHH
Q 001144 708 VIAILRSDASIDPSEVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSE-TDVSRTT 786 (1141)
Q Consensus 708 l~~~~~~~~~~~~~~~~~~i~~~~~k~L~~~el~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e-~dV~eIv 786 (1141)
.+ ..+++-.++..+.|.+.....+|+..|..+.+..|.+... ...+.++
T Consensus 277 ---------------~~---------------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~ 326 (588)
T 1b3u_A 277 ---------------IT---------------KTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQIL 326 (588)
T ss_dssp ---------------HH---------------HHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHH
T ss_pred ---------------cc---------------hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHH
Confidence 00 0112223334455666666678888888888877765321 1155566
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHHHHhhhcccchhhHHHHhhhhcccccccccccccCCCChhhHHHHhhcCcchHHHHHH
Q 001144 787 QSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLE 866 (1141)
Q Consensus 787 ~~i~~~L~~i~~~~~r~~~l~ai~lLa~~h~~~Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~aLa~~~~l~~~vL~ 866 (1141)
..+...+ ...++.+|..+..++..++....++.. ...++.
T Consensus 327 p~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~~~~~---------------------------------------~~~l~p 366 (588)
T 1b3u_A 327 PCIKELV-SDANQHVKSALASVIMGLSPILGKDNT---------------------------------------IEHLLP 366 (588)
T ss_dssp HHHHHHH-TCSCHHHHHHHHTTGGGGHHHHCHHHH---------------------------------------HHHTHH
T ss_pred HHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhHhHH---------------------------------------HHHHHH
Confidence 6665444 345678888777777666544332211 112223
Q ss_pred HHHHHHccCCCccCCCCCCCCCCCCCCcccchhhHHHHHHHHHHHHhcCCcchHHHHHHhhhHHHHHHHHHHhhhccCCC
Q 001144 867 HLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLAS 946 (1141)
Q Consensus 867 ~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~plaAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~ 946 (1141)
.++..++.. . . -+-.+|..+|..+...-+ .......+.|.|.-. + .
T Consensus 367 ~l~~~l~d~-----~----------~------~Vr~~a~~~l~~l~~~~~--~~~~~~~~lp~l~~~----~----~--- 412 (588)
T 1b3u_A 367 LFLAQLKDE-----C----------P------EVRLNIISNLDCVNEVIG--IRQLSQSLLPAIVEL----A----E--- 412 (588)
T ss_dssp HHHHHHTCS-----C----------H------HHHHHHHTTCHHHHHHSC--HHHHHHHHHHHHHHH----H----T---
T ss_pred HHHHHhCCC-----c----------h------HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHH----h----c---
Confidence 333333210 0 0 012345555555444331 111223333333211 0 0
Q ss_pred CCCCCh--hHHHHHHHHHHHHhhCCh----hHHHHHHhcCCCC-chhhhHhhHHHHHHHHhhcCC-hhHHHHHHHHHhhh
Q 001144 947 SGQHEP--LRAILTSFQAFCECVGDL----EMRKILARDGEQN-DKEKWINLIGDVAGCVSIKRP-KEVQTICLILTKSI 1018 (1141)
Q Consensus 947 ~~~~~P--~~~aleAlk~lL~~~g~~----~~~~~le~~g~W~-~~~~~~~GV~lLAram~~~~~-~~~~~i~~~L~~~L 1018 (1141)
..++ -..+++++..+....|.. ++...+.. .-++ ..+--...+..++........ +....++..+...+
T Consensus 413 --d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~-~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~ 489 (588)
T 1b3u_A 413 --DAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMA-WLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMS 489 (588)
T ss_dssp --CSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHH-GGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTT
T ss_pred --CCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence 0111 234555555555544432 22222221 1111 111111122222221111111 23456666666667
Q ss_pred cCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccch-hhhhhHHHHHHHHHhhcc
Q 001144 1019 NRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYATQVLSVILALLD 1097 (1141)
Q Consensus 1019 ~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~-kv~~~~~~lL~all~~l~ 1097 (1141)
+++....|.+++..+.++..... .....+.++..|.+.+.|+++.||.-+++.||.+... ....+.+.+++.+...+.
T Consensus 490 ~~~~~~~R~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~ 568 (588)
T 1b3u_A 490 GDPNYLHRMTTLFCINVLSEVCG-QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQ 568 (588)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHH-HHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTT
T ss_pred hCCCHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcC
Confidence 77777888888888888776543 2234566888899999999999999999999988754 222334677888888888
Q ss_pred CCChhHHHHHHHHHHHH
Q 001144 1098 DLDESVQLTAVSCLLTI 1114 (1141)
Q Consensus 1098 d~~~~vvleam~~L~~l 1114 (1141)
|.|.+|...|..+|..+
T Consensus 569 d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 569 DQDVDVKYFAQEALTVL 585 (588)
T ss_dssp CSSHHHHHHHHHHHHHT
T ss_pred CCchhHHHHHHHHHHHh
Confidence 88888888888887754
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.80 E-value=2.9e-06 Score=102.50 Aligned_cols=528 Identities=13% Similarity=0.122 Sum_probs=287.5
Q ss_pred hccchhHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCHHHHHHHHHHHhccCCCCCcCCchHHHHHHHHHHHHHhhhhccc
Q 001144 428 HVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTV 507 (1141)
Q Consensus 428 ~~kd~~lK~s~l~si~~i~~al~~~~~~~~~f~f~~k~eLl~~l~~~i~~Ep~~~L~s~~~~ll~~r~~a~~ait~L~~L 507 (1141)
.+.|+..+..-++++..++..+.+. ..+.+++..+...+ ++ ++ .+|..+..++..+...
T Consensus 20 ~s~~~~~R~~A~~~l~~i~~~~~~~---------~~~~~l~~~L~~~~--d~-----~~-----~vr~~~~~~L~~~~~~ 78 (588)
T 1b3u_A 20 RNEDVQLRLNSIKKLSTIALALGVE---------RTRSELLPFLTDTI--YD-----ED-----EVLLALAEQLGTFTTL 78 (588)
T ss_dssp TCSCHHHHHHHHHTHHHHHHHSCHH---------HHHHTHHHHHHHTC--CC-----CH-----HHHHHHHHHHTTCSGG
T ss_pred hcccHHHHHHHHHhHHHHHHHhCHH---------HHHHHHHHHHHHhc--CC-----cH-----HHHHHHHHHHHHHHhc
Confidence 4678888888888888877654331 12456777776644 21 12 2788888877766542
Q ss_pred CCCCChhH-HHHHHHHhhhccccCCCCCCchHHHHHHHHHHHHHHHhhcCCCCCCCHHHH-HHHHHhhhhhhcCChhHHH
Q 001144 508 EPKLTIET-RNHVMKATLGFFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQL-LHILRQIDQYVSSPVEYQR 585 (1141)
Q Consensus 508 ~P~l~~e~-~~~ll~~clsv~~lP~~~~~~~~~l~~~l~~ll~~ll~~~~~~~~~~~~~L-q~il~~L~pWl~S~k~~ER 585 (1141)
++..+ ...++..... +-..++ ...-++..+.|..+....+ ++.+ ..++..+.....++....|
T Consensus 79 ---~~~~~~~~~ll~~L~~---l~~~~~---~~vR~~a~~~L~~l~~~~~------~~~~~~~l~~~l~~l~~~~~~~~R 143 (588)
T 1b3u_A 79 ---VGGPEYVHCLLPPLES---LATVEE---TVVRDKAVESLRAISHEHS------PSDLEAHFVPLVKRLAGGDWFTSR 143 (588)
T ss_dssp ---GTSGGGGGGGHHHHHH---HTTSSC---HHHHHHHHHHHHHHHTTSC------HHHHHHTHHHHHHHHHTCSSHHHH
T ss_pred ---cCcHHHHHHHHHHHHH---HHhCch---HHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHHHHhcCCCcHHH
Confidence 22111 1112111111 111111 2333444455555554432 2222 2234444444456666667
Q ss_pred hhHHHHHHHHHHHHHHhccccccccCCCCCcccccchhhccccCCCCCCCccCCCchhhhhhhhHHHHhhcCccCCChhH
Q 001144 586 RRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEV 665 (1141)
Q Consensus 586 eRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~f~~~p~~~~~p~~~~~~lG~lvg~l~p~C~D~~~~i 665 (1141)
+-|..+... +..+ +. ......++..+.-.|.|+++.|
T Consensus 144 ~~a~~~l~~----~~~~-------------------~~--------------------~~~~~~l~~~l~~l~~d~~~~V 180 (588)
T 1b3u_A 144 TSACGLFSV----CYPR-------------------VS--------------------SAVKAELRQYFRNLCSDDTPMV 180 (588)
T ss_dssp HHHGGGHHH----HTTT-------------------SC--------------------HHHHHHHHHHHHHHHTCSCHHH
T ss_pred HHHHHHHHH----HHHh-------------------cC--------------------HHHHHHHHHHHHHHhCCCCHHH
Confidence 666654332 2221 00 0033455556666789999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCCCCCChhhhhhhhcchhHHHHHhhcCCCCCChhHH---HHHHHHHHhhCChHHHHH
Q 001144 666 RKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVF---NRIVSSVCILLTKDELVA 742 (1141)
Q Consensus 666 r~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~---~~i~~~~~k~L~~~el~~ 742 (1141)
|..|.+++..+... . +. +.....+ +.-+... ...++..+- -.....+++.+++++..+
T Consensus 181 R~~a~~~l~~l~~~---~----~~------~~~~~~l--~~~l~~~----~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 241 (588)
T 1b3u_A 181 RRAAASKLGEFAKV---L----EL------DNVKSEI--IPMFSNL----ASDEQDSVRLLAVEACVNIAQLLPQEDLEA 241 (588)
T ss_dssp HHHHHHHHHHHHHT---S----CH------HHHHHTH--HHHHHHH----HTCSCHHHHTTHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHH---h----cH------HhHHHHH--HHHHHHH----hcCCcHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999877521 1 10 1111110 0111111 112222221 123344667778776666
Q ss_pred HHHHHHHhc-cCCCchhHHHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhcccchhh
Q 001144 743 TLHSCTTAI-CDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIV 821 (1141)
Q Consensus 743 li~tll~~L-~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~h~~~Vv 821 (1141)
.+...+..+ .|++...-.+|+..|..+....|.+. . .++++..+..-+. ..++.+|..+..++..++...+.+..
T Consensus 242 ~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~-~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~ 317 (588)
T 1b3u_A 242 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI--T-KTDLVPAFQNLMK-DCEAEVRAAASHKVKEFCENLSADCR 317 (588)
T ss_dssp HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH--H-HHTHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHTSCTTTH
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc--c-hhHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHhChhhh
Confidence 555554444 56655555788888888888766543 1 3556666655554 46788999988888877776554311
Q ss_pred HHHHhhhhcccccccccccccCCCChhhHHHHhhcCcchHHHHHHHHHHHHccCCCccCCCCCCCCCCCCCCcccchhhH
Q 001144 822 FNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDIL 901 (1141)
Q Consensus 822 ~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~aLa~~~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~p 901 (1141)
.+.. ...++..+...++... + ..-
T Consensus 318 ~~~~-----------------------------------~~~l~p~l~~~l~d~~-----------------~----~vR 341 (588)
T 1b3u_A 318 ENVI-----------------------------------MSQILPCIKELVSDAN-----------------Q----HVK 341 (588)
T ss_dssp HHHH-----------------------------------HHTHHHHHHHHHTCSC-----------------H----HHH
T ss_pred hhHH-----------------------------------HHHHHHHHHHHhcCCC-----------------H----HHH
Confidence 1001 1112222222222100 0 012
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHhhhHHHHHHHHHHhhhccCCCCCCCCh-h-HHHHHHHHHHHHhhCChh----HHHH
Q 001144 902 QAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEP-L-RAILTSFQAFCECVGDLE----MRKI 975 (1141)
Q Consensus 902 laAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P-~-~~aleAlk~lL~~~g~~~----~~~~ 975 (1141)
-+|..+|+++...-|++ .. ++.++-.|+..+. ..+| . ..+++++..+....|... +...
T Consensus 342 ~~a~~~l~~l~~~~~~~--~~----~~~l~p~l~~~l~---------d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~ 406 (588)
T 1b3u_A 342 SALASVIMGLSPILGKD--NT----IEHLLPLFLAQLK---------DECPEVRLNIISNLDCVNEVIGIRQLSQSLLPA 406 (588)
T ss_dssp HHHHTTGGGGHHHHCHH--HH----HHHTHHHHHHHHT---------CSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHh--HH----HHHHHHHHHHHhC---------CCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34555555544332111 11 2222222222221 1122 2 245556666555444321 1111
Q ss_pred H---HhcCCCCchhhhHhhHHHHHHHHhhcCChhHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHHHHH
Q 001144 976 L---ARDGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVE 1052 (1141)
Q Consensus 976 l---e~~g~W~~~~~~~~GV~lLAram~~~~~~~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~ 1052 (1141)
+ -.+..|.--....+.+..+++.+... ...+.++..+...++.+...=|..|+..+..+..... .....+.++.
T Consensus 407 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~-~~~~~~~llp 483 (588)
T 1b3u_A 407 IVELAEDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG-KEWAHATIIP 483 (588)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-HHHHHHHTHH
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 1 12445652223344455555544322 1234677777788888777778888888888887654 2223456777
Q ss_pred HHhhhcCCCCchhhhhhccccCCccch-hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCCCCccchHHHHH
Q 001144 1053 ALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLS 1131 (1141)
Q Consensus 1053 ~L~~~l~D~~~~VR~lslrGLgnl~~~-kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~l~~~~~~~~l~~ia 1131 (1141)
.|.+...|+++.||..++..+|.++.. ....+.+.+++.++..+.|.+.+|...++.+|+.+...++.....+.++...
T Consensus 484 ~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l 563 (588)
T 1b3u_A 484 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPIL 563 (588)
T ss_dssp HHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 888888999999999999999998765 3345778899999999999999999999999999999887654433444433
No 11
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.84 E-value=0.03 Score=64.92 Aligned_cols=113 Identities=16% Similarity=0.165 Sum_probs=88.3
Q ss_pred HHHHHHHHHhhhcCCc-------ccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccch
Q 001144 1007 VQTICLILTKSINRQQ-------RFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI 1079 (1141)
Q Consensus 1007 ~~~i~~~L~~~L~s~~-------~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~ 1079 (1141)
++.++..+...+.... ..-|..|...+..+..... . .....++..+.+.++|+++.+|..++..+|+++.+
T Consensus 319 ~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~-~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~ 396 (462)
T 1ibr_B 319 LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-D-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG 396 (462)
T ss_dssp HHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-T-THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred hhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 3455555555554321 1457778888888777654 3 45567888999999999999999999999999875
Q ss_pred ----hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCCC
Q 001144 1080 ----HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKD 1121 (1141)
Q Consensus 1080 ----kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~l~~~ 1121 (1141)
.++.+.+.+++.++..+.|++..|...|..+|+++...++..
T Consensus 397 ~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~ 442 (462)
T 1ibr_B 397 PEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA 442 (462)
T ss_dssp SCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGG
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccc
Confidence 245677899999999999999999999999999999988663
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.50 E-value=0.047 Score=63.23 Aligned_cols=94 Identities=18% Similarity=0.199 Sum_probs=73.9
Q ss_pred ChhHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccC--CccchHHHHHHHHhhhcCCCCchhhhhhccccCCccch--
Q 001144 1004 PKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSG--GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-- 1079 (1141)
Q Consensus 1004 ~~~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~--~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~-- 1079 (1141)
...++.++..+...+++++-..|.+|.-.+..+...+. .....+..++..+...++|+++.||..+...||++...
T Consensus 361 ~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 361 DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence 35678888999999999888899999999998887543 11233456889999999999999999999999998765
Q ss_pred -hh--hhhHHHHHHHHHhhcc
Q 001144 1080 -HI--HQYATQVLSVILALLD 1097 (1141)
Q Consensus 1080 -kv--~~~~~~lL~all~~l~ 1097 (1141)
.+ ..|.+.++++++.+|.
T Consensus 441 ~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 441 EAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp GGCCSTTTHHHHHHHHHCC--
T ss_pred cccccHHHHHHHHHHHHHHhc
Confidence 22 4678888998888764
No 13
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.49 E-value=0.29 Score=59.70 Aligned_cols=396 Identities=13% Similarity=0.138 Sum_probs=225.8
Q ss_pred CccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCChhhhhhhhcchhHHHHHhhcCCCCCChhHHHHHHHHHHhhCC
Q 001144 657 RCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFNRIVSSVCILLT 736 (1141)
Q Consensus 657 ~C~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~k~L~ 736 (1141)
.+.+++.++|+.+--++..+... +.+...-.... .+.++..+++.+-.-....++..-+
T Consensus 57 l~~s~~~~~Krl~yl~l~~~~~~--------------~~e~~~l~~n~-------l~kdL~~~n~~ir~~AL~~L~~i~~ 115 (591)
T 2vgl_B 57 CMQTDNLELKKLVYLYLMNYAKS--------------QPDMAIMAVNS-------FVKDCEDPNPLIRALAVRTMGCIRV 115 (591)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHH--------------SHHHHHTTHHH-------HGGGSSSSSHHHHHHHHHHHHTCCS
T ss_pred HhCCCCHHHHHHHHHHHHHHccc--------------CchHHHHHHHH-------HHHHcCCCCHHHHHHHHHHHHcCCh
Confidence 57899999999887777665421 00111111111 2555665544333334566777666
Q ss_pred hHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHh--HHHHHHHHHhhhcCcHHHHHHHHHHHHHhhh
Q 001144 737 KDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVS--RTTQSLLSAAVHITDKHLRLETLGAISCLAE 814 (1141)
Q Consensus 737 ~~el~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~--eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~ 814 (1141)
++-...++-.+...|.|++...-.+|+..+..+.+ .+++. ++ +++..+..-|. -.++.++..+..++.-++.
T Consensus 116 ~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~-~~p~~----~~~~~~~~~l~~lL~-d~d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 116 DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHD-INAQM----VEDQGFLDSLRDLIA-DSNPMVVANAVAALSEISE 189 (591)
T ss_dssp GGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHH-SSCCC----HHHHHHHHHHHHTTS-CSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHh-hChhh----cccccHHHHHHHHhC-CCChhHHHHHHHHHHHHHh
Confidence 66555666678888899888888899988888887 34444 44 57777777775 6778999999999999999
Q ss_pred cccch--------hhHHHHhhhhcccccccccccccCCCChhh--HHHHhhcCc----chHHHHHHHHHHHHccCCCccC
Q 001144 815 NTNSK--------IVFNEVLATAGKDIVTKDISRLRGGWPMQD--AFHAFSQHA----VLSFLFLEHLISALNQTPFVKG 880 (1141)
Q Consensus 815 ~h~~~--------Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~--~W~aLa~~~----~l~~~vL~~LL~~L~~~p~~~e 880 (1141)
+.++. .+. .|+..+. .+=|+.. +-++++.-. .....+++.++..|++
T Consensus 190 ~~~~~~~~~l~~~~~~-~Ll~~l~------------~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~------ 250 (591)
T 2vgl_B 190 SHPNSNLLDLNPQNIN-KLLTALN------------ECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSH------ 250 (591)
T ss_dssp SCCSCCSCCCHHHHHH-HHHHHHH------------HCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCS------
T ss_pred hCCCccchhccHHHHH-HHHHcCC------------CCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcC------
Confidence 87743 243 5552111 0112222 334443322 2233334333332221
Q ss_pred CCCCCCCCCCCCCcccchhhHHHHHHHHHHHHhc--CCcchHHHH-HHhhhHHHHHH-----------HHHHhhhccCCC
Q 001144 881 DMEKGDYSSHSADTWIDDDILQAAILALTAFFRG--GGKVGKKAV-EKSYAPVLAAL-----------TLQLGSCHGLAS 946 (1141)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~~~plaAt~aL~Ell~~--~~~~~~~av-~~~fp~Lf~aL-----------L~ql~~~~~~~~ 946 (1141)
. ..-+-.+|+.++..+... .+.+.-..+ .+.-|.|+ .| +..++......|
T Consensus 251 -----------~----~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~-~L~~~d~~vr~~aL~~l~~i~~~~p 314 (591)
T 2vgl_B 251 -----------A----NSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLV-TLLSGEPEVQYVALRNINLIVQKRP 314 (591)
T ss_dssp -----------S----TTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHH-HHTTSCHHHHHHHHHHHHHHHHHCC
T ss_pred -----------C----ChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH-HHhcCCccHHHHHHHHHHHHHHhCh
Confidence 1 112346777777776531 111222211 12212111 11 111111111001
Q ss_pred C-----------CCCChhHHHHHHHHHHHHhhCChhHHHHHHhcCCCC---chhhhHhhHHHHHHHHhhcCChhHHHHHH
Q 001144 947 S-----------GQHEPLRAILTSFQAFCECVGDLEMRKILARDGEQN---DKEKWINLIGDVAGCVSIKRPKEVQTICL 1012 (1141)
Q Consensus 947 ~-----------~~~~P~~~aleAlk~lL~~~g~~~~~~~le~~g~W~---~~~~~~~GV~lLAram~~~~~~~~~~i~~ 1012 (1141)
. ...+|...-.+|+..+..-+....+...+..-..+- +.+.-.+.|.-+++ ++.+.++....++.
T Consensus 315 ~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~-la~~~~~~~~~~v~ 393 (591)
T 2vgl_B 315 EILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGR-CAIKVEQSAERCVS 393 (591)
T ss_dssp STTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHH-HHTTCHHHHHHHHH
T ss_pred HHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHHhChhHHHHHHH
Confidence 0 113455666777777666555443333332211111 22333344444444 34445556788889
Q ss_pred HHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcC-CCCchhhhhhccccCCccchhhhhhHHHHHHH
Q 001144 1013 ILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVS-DESPTVRGLCLRGLVQIPSIHIHQYATQVLSV 1091 (1141)
Q Consensus 1013 ~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~-D~~~~VR~lslrGLgnl~~~kv~~~~~~lL~a 1091 (1141)
.+..+++...+.-+-.++..+.++++..... .+.++..|.+.+. +.+|.+|..++--+|.....- ...+.++..
T Consensus 394 ~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~---~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~--~~~~~~l~~ 468 (591)
T 2vgl_B 394 TLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK---YESIIATLCENLDSLDEPDARAAMIWIVGEYAERI--DNADELLES 468 (591)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS---CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTC--TTHHHHHHH
T ss_pred HHHHHHcccchHHHHHHHHHHHHHHHHCcch---HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccc--cCHHHHHHH
Confidence 9999998776655555667788888764311 1235556667776 456899998888888775441 124677888
Q ss_pred HHhhccCCChhHHHHHHHHHHHHhccCCC
Q 001144 1092 ILALLDDLDESVQLTAVSCLLTILKSSSK 1120 (1141)
Q Consensus 1092 ll~~l~d~~~~vvleam~~L~~lL~~l~~ 1120 (1141)
+++.+.+.+..|...++.++.++..+...
T Consensus 469 l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~ 497 (591)
T 2vgl_B 469 FLEGFHDESTQVQLTLLTAIVKLFLKKPS 497 (591)
T ss_dssp HSTTCSSSCHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHhhccCCHHHHHHHHHHHHHHHhcCch
Confidence 88888877789999999999999987654
No 14
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.03 E-value=0.032 Score=64.55 Aligned_cols=324 Identities=12% Similarity=0.101 Sum_probs=178.9
Q ss_pred HHHHhccCCCchhHHHHHHHHHHHHH-hhccccchhhHh--HHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhcccc----
Q 001144 746 SCTTAICDRTKQSAEGAIQAVVEFVT-KRGNELSETDVS--RTTQSLLSAAVHITDKHLRLETLGAISCLAENTNS---- 818 (1141)
Q Consensus 746 tll~~L~d~~~~~~~~A~~~L~~~l~-~~g~~l~e~dV~--eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~h~~---- 818 (1141)
.+++.|.+.+......|+..|..++. .+...+.+. +. .++..+...|.+-.++.+|..+..++..++.+.++
T Consensus 24 ~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~-~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 102 (450)
T 2jdq_A 24 DMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEV-ISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRI 102 (450)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHH-HTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHH-HHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 34455556666666778888877765 233333111 32 46777777777766789999999999999985432
Q ss_pred ----hhhHHHHhhhhcccccccccccccCCCChhh-----HHHHhhcC-cchHH-----HHHHHHHHHHccCCCccCCCC
Q 001144 819 ----KIVFNEVLATAGKDIVTKDISRLRGGWPMQD-----AFHAFSQH-AVLSF-----LFLEHLISALNQTPFVKGDME 883 (1141)
Q Consensus 819 ----~Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~-----~W~aLa~~-~~l~~-----~vL~~LL~~L~~~p~~~e~~~ 883 (1141)
.++. .|+. +. ..+-|--+ ....++.+ +.... .++..|+..++..+
T Consensus 103 ~~~~~~i~-~L~~-lL-----------~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~------- 162 (450)
T 2jdq_A 103 VIQAGAVP-IFIE-LL-----------SSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQN------- 162 (450)
T ss_dssp HHHTTHHH-HHHH-HT-----------TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCC-------
T ss_pred HHhCCCHH-HHHH-HH-----------cCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC-------
Confidence 3343 4441 11 11111111 22233333 22221 23555666554210
Q ss_pred CCCCCCCCCCcccchhhHHHHHHHHHHHHhcCCcc-hHHHHHHhhhHHHHHHHHHHhhhccCCCCCCCCh--hHHHHHHH
Q 001144 884 KGDYSSHSADTWIDDDILQAAILALTAFFRGGGKV-GKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEP--LRAILTSF 960 (1141)
Q Consensus 884 ~~~~~~~~~~~~~~~~~plaAt~aL~Ell~~~~~~-~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P--~~~aleAl 960 (1141)
..-+-..|+.+|+.+....+.. ....+....|.|+-.+ . . .++ ...+.+++
T Consensus 163 -------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l----~------~---~~~~v~~~a~~~L 216 (450)
T 2jdq_A 163 -------------RLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLL----F------V---SDTDVLADACWAL 216 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHT----T------C---CCHHHHHHHHHHH
T ss_pred -------------CHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHH----c------c---CCHHHHHHHHHHH
Confidence 0012456788888887653111 2222334444333221 1 1 123 34556666
Q ss_pred HHHHHhhCChhHHHHHHhcCCCC---------chhhhHhhHHHHHHHHhhcCChhHH-----HHHHHHHhhhcCCcccch
Q 001144 961 QAFCECVGDLEMRKILARDGEQN---------DKEKWINLIGDVAGCVSIKRPKEVQ-----TICLILTKSINRQQRFQR 1026 (1141)
Q Consensus 961 k~lL~~~g~~~~~~~le~~g~W~---------~~~~~~~GV~lLAram~~~~~~~~~-----~i~~~L~~~L~s~~~~qR 1026 (1141)
..+... ..+....+-..|... +++.-...+..|+ .++...+.... +++..+.+.++++...-|
T Consensus 217 ~~l~~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~-~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr 293 (450)
T 2jdq_A 217 SYLSDG--PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVG-NIVTGDDIQTQVILNCSALQSLLHLLSSPKESIK 293 (450)
T ss_dssp HHHTSS--SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHH-HHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHH
T ss_pred HHHHCC--CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHH-HHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHH
Confidence 655431 111112222222211 1112222222222 23333222221 477788888988877778
Q ss_pred hHHHHHHHHhhhccC-CccchHH-HHHHHHhhhcCCCCchhhhhhccccCCccch----hhhhh-HHHHHHHHHhhccCC
Q 001144 1027 EAAAAALSEFVRYSG-GFDSLLE-QMVEALCRHVSDESPTVRGLCLRGLVQIPSI----HIHQY-ATQVLSVILALLDDL 1099 (1141)
Q Consensus 1027 i~a~af~sELL~~~~-~~~~l~~-~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~----kv~~~-~~~lL~all~~l~d~ 1099 (1141)
..|+..+..+..... ....+.+ .++..|.+.+.|+++.||..+...|+|++.+ .++.. ...+++.++..+.+.
T Consensus 294 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~ 373 (450)
T 2jdq_A 294 KEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVM 373 (450)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCC
Confidence 888888888775332 1112222 3666777778889999999999999999764 22222 235789999999998
Q ss_pred ChhHHHHHHHHHHHHhccCC
Q 001144 1100 DESVQLTAVSCLLTILKSSS 1119 (1141)
Q Consensus 1100 ~~~vvleam~~L~~lL~~l~ 1119 (1141)
+..+...|+.+|.+++..-+
T Consensus 374 ~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 374 DSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhch
Confidence 89999999999999987543
No 15
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.68 E-value=2.7 Score=54.09 Aligned_cols=82 Identities=5% Similarity=0.009 Sum_probs=55.1
Q ss_pred HHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccc-cchhhHhHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhcccchh
Q 001144 742 ATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNE-LSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKI 820 (1141)
Q Consensus 742 ~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~-l~e~dV~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~h~~~V 820 (1141)
+.++..+..+...... ...|..++..++..-|.. +..- ++.+++.+..++..-..+..++..+..+..++-.+..+.
T Consensus 720 ~~~l~~~~~~~~~~~~-~~~a~~ll~~i~~~~~~~~~~~y-l~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 797 (960)
T 1wa5_C 720 VPVLGIFQRLIASKAY-EVHGFDLLEHIMLLIDMNRLRPY-IKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDF 797 (960)
T ss_dssp HHHHHHHHHHHTCTTT-HHHHHHHHHHHHHHSCHHHHGGG-HHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhCCCcc-cchHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHcCHHH
Confidence 3445555544332222 277888888888877777 7444 999999999999887667777777777777775554443
Q ss_pred hHHHHh
Q 001144 821 VFNEVL 826 (1141)
Q Consensus 821 v~~~LL 826 (1141)
+. ..|
T Consensus 798 ~~-~~l 802 (960)
T 1wa5_C 798 LI-HFI 802 (960)
T ss_dssp HH-HHH
T ss_pred HH-HHH
Confidence 43 555
No 16
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.59 E-value=1.6 Score=56.24 Aligned_cols=205 Identities=12% Similarity=0.116 Sum_probs=122.4
Q ss_pred chHHHHHHhhhHHHHHHHHHHhhhccCCCCCCCCh---------hHHHHHHHHHHHHhhCChhHHH----HHHh---c--
Q 001144 918 VGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEP---------LRAILTSFQAFCECVGDLEMRK----ILAR---D-- 979 (1141)
Q Consensus 918 ~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P---------~~~aleAlk~lL~~~g~~~~~~----~le~---~-- 979 (1141)
........+|++|+-.++.++.|--+..- ..-+| -+.+.++++.+....| .++.. .++. .
T Consensus 395 ~~~~~~~~~~~~ll~~l~~~~~~p~~~~~-~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~ 472 (971)
T 2x1g_F 395 KCWEYIKPLYAHLTRILVRKSEQPDEKSL-AKWSSDDLECFRCYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQ 472 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCCTTTT-SCSCHHHHHHHHHHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcccc-cccCHhHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhcc
Confidence 45567788999999999888854111100 01122 3467777777666555 33332 2211 1
Q ss_pred ---CCCCchhhhHhhHHHHHHHHhhcCChhHHHHHHHHHhhhcCC--cccchhHHH---HHHHHhhhccCCccchHHHHH
Q 001144 980 ---GEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQ--QRFQREAAA---AALSEFVRYSGGFDSLLEQMV 1051 (1141)
Q Consensus 980 ---g~W~~~~~~~~GV~lLAram~~~~~~~~~~i~~~L~~~L~s~--~~~qRi~a~---af~sELL~~~~~~~~l~~~~l 1051 (1141)
..|...+.-.-++.-+|..+.....+.++.++. +++.+.+. +..=|.+++ +-|++++.... ..+..++
T Consensus 473 ~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~---~~l~~vl 548 (971)
T 2x1g_F 473 RHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENP---AYIPPAI 548 (971)
T ss_dssp HCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-------CHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH---HHHHHHH
Confidence 467644444444555555444444467888888 66666642 222233333 33445554322 3556788
Q ss_pred HHHhhhcCCCCchhhhhhccccCCccch---hhhhhHHHHHHHHHhhccC--CChhHHHHHHHHHHHHhccCCCCCccch
Q 001144 1052 EALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDD--LDESVQLTAVSCLLTILKSSSKDAVEPI 1126 (1141)
Q Consensus 1052 ~~L~~~l~D~~~~VR~lslrGLgnl~~~---kv~~~~~~lL~all~~l~d--~~~~vvleam~~L~~lL~~l~~~~~~~~ 1126 (1141)
..|.+++ | +.|+..+-..+.++... .+..|.++++..+...+.. .+.......|.+++.++..++.....++
T Consensus 549 ~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~ 625 (971)
T 2x1g_F 549 NLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKY 625 (971)
T ss_dssp HHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHH
T ss_pred HHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 8888888 4 78888887777777543 6677888888888888876 3567788889999999988775666666
Q ss_pred HHHHH
Q 001144 1127 LLNLS 1131 (1141)
Q Consensus 1127 l~~ia 1131 (1141)
+..+.
T Consensus 626 ~~~ll 630 (971)
T 2x1g_F 626 LDIIV 630 (971)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 17
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.55 E-value=2.4 Score=51.83 Aligned_cols=181 Identities=13% Similarity=0.081 Sum_probs=97.7
Q ss_pred CCChhhHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhcccCCccchhhHHHHHHHHhhcCHHHHHHHHHHHHhhhccccc
Q 001144 292 TPDDDHSALLHRCLGILLQKVADRNYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASHLDAVLEMLKGILDNIGQSLF 371 (1141)
Q Consensus 292 ~~~~~eK~fL~k~lG~~L~~~~~~~~V~~~L~~ll~~~~~~~~~ereG~A~~~G~~A~~Hld~vL~~Le~~~k~~~~~~~ 371 (1141)
.+...+|...|-++...+ -.+.+...--+..+.+-..+.++..|---..++|-.+.. .....+....+
T Consensus 81 s~~~~~Krl~Yl~~~~~~--~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~---~~~~~l~~~l~------- 148 (618)
T 1w63_A 81 SQKFTDKRIGYLGAMLLL--DERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSS---EMCRDLAGEVE------- 148 (618)
T ss_dssp SSSHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH---HHHHHHHHHHH-------
T ss_pred CCchHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH---HHHHHHHHHHH-------
Confidence 345677887776544433 345555444445555555567888887777888888753 22111111111
Q ss_pred hhhhccccCcccccchHhHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhh
Q 001144 372 QRLLSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVIN 451 (1141)
Q Consensus 372 ~~~~~~~k~~~~~~e~~~~ks~l~l~YG~va~~ap~~~l~~rve~~I~~~i~~~~~~~kd~~lK~s~l~si~~i~~al~~ 451 (1141)
..++++. .-+|.+..+|.+.+....|. .+ + .+++ .+..+++.+|+.+..+-+.++..|+.. .+
T Consensus 149 ----~~L~~~~-----~~VRk~A~~al~~l~~~~p~-~v----~-~~~~-~l~~lL~D~d~~V~~~Al~~L~~i~~~-~~ 211 (618)
T 1w63_A 149 ----KLLKTSN-----SYLRKKAALCAVHVIRKVPE-LM----E-MFLP-ATKNLLNEKNHGVLHTSVVLLTEMCER-SP 211 (618)
T ss_dssp ----HHHHSCC-----HHHHHHHHHHHHHHHHHCGG-GG----G-GGGG-GTTTSTTCCCHHHHHHHHHHHHHHCCS-HH
T ss_pred ----HHHcCCC-----HHHHHHHHHHHHHHHHHChH-HH----H-HHHH-HHHHHhCCCCHhHHHHHHHHHHHHHHh-Ch
Confidence 1222322 35888888999999988774 33 1 1222 233344557888888888888887642 11
Q ss_pred hhhcCCCcCCCCHHHHHHHHHHHhc-cCCCCC----cCCchHHHHHHHHHHHHHhhhhcccCC
Q 001144 452 AAENGASFPLKKRDQLLDYILTLMG-REENDS----FADSSIELLHTQALALSACTTLVTVEP 509 (1141)
Q Consensus 452 ~~~~~~~f~f~~k~eLl~~l~~~i~-~Ep~~~----L~s~~~~ll~~r~~a~~ait~L~~L~P 509 (1141)
.... .|. +.-+.+++.+..++. .+++++ ..+| . .+..++.++..+..-+|
T Consensus 212 ~~~~--~~~-~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~---~--~q~~il~~L~~l~~~~~ 266 (618)
T 1w63_A 212 DMLA--HFR-KLVPQLVRILKNLIMSGYSPEHDVSGISDP---F--LQVRILRLLRILGRNDD 266 (618)
T ss_dssp HHHH--HHH-TTHHHHHHHHHHHHHSCCCTTTCSSSSSCH---H--HHHHHHHHHHHHTTTCH
T ss_pred HHHH--HHH-HHHHHHHHHHHHHHcCCCCccccccCCCCC---h--HHHHHHHHHHHhCCCCH
Confidence 1000 111 224556655555432 223332 2234 2 44667777777766554
No 18
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.44 E-value=0.066 Score=64.04 Aligned_cols=324 Identities=12% Similarity=0.105 Sum_probs=175.5
Q ss_pred HHHHHHhccCCCchhHHHHHHHHHHHHHhhc-cccchhhH--hHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhcccc--
Q 001144 744 LHSCTTAICDRTKQSAEGAIQAVVEFVTKRG-NELSETDV--SRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNS-- 818 (1141)
Q Consensus 744 i~tll~~L~d~~~~~~~~A~~~L~~~l~~~g-~~l~e~dV--~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~h~~-- 818 (1141)
+..+++.|.+.+......|+..|..++.... ... .. + ..++..+..-|..-.++.+|..+..++..++...++
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~-~~-~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPI-DV-VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSH-HH-HHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccH-HH-HHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 4556667777766666777777877765321 111 11 1 235566666666655789999999999999986542
Q ss_pred ------hhhHHHHhhhhcccccccccccccCCCChhh------HHHHhhcCcchHH-----HHHHHHHHHHccCCCccCC
Q 001144 819 ------KIVFNEVLATAGKDIVTKDISRLRGGWPMQD------AFHAFSQHAVLSF-----LFLEHLISALNQTPFVKGD 881 (1141)
Q Consensus 819 ------~Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~------~W~aLa~~~~l~~-----~vL~~LL~~L~~~p~~~e~ 881 (1141)
.++. .|+..+. . +-|--+ +|...+..+.... .++..|+..|+.. +
T Consensus 167 ~~~~~~g~i~-~Lv~lL~-----------~-~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-----~ 228 (530)
T 1wa5_B 167 KVVVDADAVP-LFIQLLY-----------T-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-----K 228 (530)
T ss_dssp HHHHHTTCHH-HHHHHHH-----------H-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC-----C
T ss_pred HHHHHCCCHH-HHHHHHc-----------C-CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC-----C
Confidence 2232 3331111 1 101011 2222222222111 2344555554420 0
Q ss_pred CCCCCCCCCCCCcccchhhHHHHHHHHHHHHhcCCcch-HHHHHHhhhHHHHHHHHHHhhhccCCCCCCCCh--hHHHHH
Q 001144 882 MEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVG-KKAVEKSYAPVLAALTLQLGSCHGLASSGQHEP--LRAILT 958 (1141)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~~plaAt~aL~Ell~~~~~~~-~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P--~~~ale 958 (1141)
.-+-..|+.+|..+....+... ...+....|.|+-. +. ..+| ...+.+
T Consensus 229 ----------------~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l----L~---------~~d~~v~~~a~~ 279 (530)
T 1wa5_B 229 ----------------PSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL----IY---------SMDTETLVDACW 279 (530)
T ss_dssp ----------------HHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHH----TT---------CCCHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHH----Hc---------CCCHHHHHHHHH
Confidence 0113467888888776531122 22233334433322 11 1123 345666
Q ss_pred HHHHHHHhhCChhHHHHHHhcCCCC---------chhhhHhhHHHHHHHHhhcCChhH-----HHHHHHHHhhhcCCccc
Q 001144 959 SFQAFCECVGDLEMRKILARDGEQN---------DKEKWINLIGDVAGCVSIKRPKEV-----QTICLILTKSINRQQRF 1024 (1141)
Q Consensus 959 Alk~lL~~~g~~~~~~~le~~g~W~---------~~~~~~~GV~lLAram~~~~~~~~-----~~i~~~L~~~L~s~~~~ 1024 (1141)
+|..+.. +..+....+-..|+.. +...-..++..|+ .++...+... .+++..+...|+++...
T Consensus 280 ~L~~L~~--~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~-~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~ 356 (530)
T 1wa5_B 280 AISYLSD--GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG-NIVTGNDLQTQVVINAGVLPALRLLLSSPKEN 356 (530)
T ss_dssp HHHHHHS--SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH-HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHH
T ss_pred HHHHHhC--CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHH-HHHcCCHHHHHHHHHcchHHHHHHHHcCCCHH
Confidence 6666543 2222222222223321 1112222232232 2333222222 24667788888888777
Q ss_pred chhHHHHHHHHhhhccC-CccchHH-HHHHHHhhhcCCCCchhhhhhccccCCccchh-----hhhh--HHHHHHHHHhh
Q 001144 1025 QREAAAAALSEFVRYSG-GFDSLLE-QMVEALCRHVSDESPTVRGLCLRGLVQIPSIH-----IHQY--ATQVLSVILAL 1095 (1141)
Q Consensus 1025 qRi~a~af~sELL~~~~-~~~~l~~-~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~k-----v~~~--~~~lL~all~~ 1095 (1141)
-|..|+..+..+..... ....+.+ .++..|.+.+.++++.||..++..|+|++.+. ..++ ...+++.++..
T Consensus 357 vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~l 436 (530)
T 1wa5_B 357 IKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDL 436 (530)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHH
Confidence 77788888888765332 1111222 25556777777889999999999999997641 1111 23478899999
Q ss_pred ccCCChhHHHHHHHHHHHHhccCC
Q 001144 1096 LDDLDESVQLTAVSCLLTILKSSS 1119 (1141)
Q Consensus 1096 l~d~~~~vvleam~~L~~lL~~l~ 1119 (1141)
+.+.+..+...++.+|.+++..-+
T Consensus 437 l~~~~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 437 LEIADNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHhhh
Confidence 998899999999999999987654
No 19
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.39 E-value=0.3 Score=59.97 Aligned_cols=70 Identities=11% Similarity=-0.027 Sum_probs=49.6
Q ss_pred HHHHHHHHHhhhhhhcCChhHHHhhHHHHHHHHHHHHHHhccccccccCCCCCcccccchhhccccCCCCCCCccCCCch
Q 001144 563 ADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSR 642 (1141)
Q Consensus 563 ~~~Lq~il~~L~pWl~S~k~~EReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~f~~~p~~~~~p~~ 642 (1141)
++-+..+...+...++|+++..|.-|+.+...+-. .
T Consensus 102 ~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~---------------------------~----------------- 137 (618)
T 1w63_A 102 QDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS---------------------------S----------------- 137 (618)
T ss_dssp HHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC---------------------------H-----------------
T ss_pred cHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC---------------------------H-----------------
Confidence 55555577888888999999999888777533211 0
Q ss_pred hhhhhhhHHHHhhcCccCCChhHHHHHHHHHHHHHH
Q 001144 643 EALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFS 678 (1141)
Q Consensus 643 ~~~~lG~lvg~l~p~C~D~~~~ir~~A~~~i~~Ll~ 678 (1141)
.....++..+.-...|+++.||+.|+.|++.++.
T Consensus 138 --~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~ 171 (618)
T 1w63_A 138 --EMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIR 171 (618)
T ss_dssp --HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 0233344444445679999999999999999984
No 20
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.33 E-value=0.0069 Score=64.91 Aligned_cols=136 Identities=15% Similarity=0.166 Sum_probs=106.1
Q ss_pred HhhHHHHHHHHhhcCChhHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhh
Q 001144 989 INLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGL 1068 (1141)
Q Consensus 989 ~~GV~lLAram~~~~~~~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~l 1068 (1141)
..++..||+.+...-.+++..++..++..+..+...=|-.|...+..+..+.. ++.++..+...++|.|+.||.-
T Consensus 78 ~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-----~~~ll~~l~~~l~~~~~~vr~~ 152 (242)
T 2qk2_A 78 GKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-----LEAQQESIVESLSNKNPSVKSE 152 (242)
T ss_dssp HHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-----HHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHcCCChHHHHH
Confidence 34455566555443345778888888888888777777888888888877542 3568888999999999999999
Q ss_pred hccccCCccch-----hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCCCCccchHHH
Q 001144 1069 CLRGLVQIPSI-----HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLN 1129 (1141)
Q Consensus 1069 slrGLgnl~~~-----kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~l~~~~~~~~l~~ 1129 (1141)
++.-|+.+... ....|.+.+++.+...+.|.+..|.-.|+.+++.+...++.+.+.+++-+
T Consensus 153 ~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~ 218 (242)
T 2qk2_A 153 TALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLAD 218 (242)
T ss_dssp HHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTT
T ss_pred HHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence 99999986332 23567789999999999999999999999999999988887766666543
No 21
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.21 E-value=4.8 Score=51.74 Aligned_cols=138 Identities=8% Similarity=0.047 Sum_probs=89.5
Q ss_pred HHhhcCC-hhHHHHHHHHHhhhc------CCcccchhHHHHHHHHhhhc---cC-Ccc-----chHHH-HHHHHhhhcCC
Q 001144 998 CVSIKRP-KEVQTICLILTKSIN------RQQRFQREAAAAALSEFVRY---SG-GFD-----SLLEQ-MVEALCRHVSD 1060 (1141)
Q Consensus 998 am~~~~~-~~~~~i~~~L~~~L~------s~~~~qRi~a~af~sELL~~---~~-~~~-----~l~~~-~l~~L~~~l~D 1060 (1141)
.++.+.+ ..++.++.++...++ ++.-+.|-+|.-.+.-+... +. +.. .-++. +.+.+...++|
T Consensus 387 ~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~ 466 (960)
T 1wa5_C 387 ELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTS 466 (960)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHC
T ss_pred HHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcC
Confidence 3344443 345667777766665 33335565555444444211 11 111 12333 34556666777
Q ss_pred C---CchhhhhhccccCCccchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCC----------CCCccchH
Q 001144 1061 E---SPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSS----------KDAVEPIL 1127 (1141)
Q Consensus 1061 ~---~~~VR~lslrGLgnl~~~kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~l~----------~~~~~~~l 1127 (1141)
+ +|.||.-++..+|.....--..+...++++++.+|.|.+..|...|-.+|.+++...+ ...+.|++
T Consensus 467 ~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l 546 (960)
T 1wa5_C 467 NNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST 546 (960)
T ss_dssp SSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTH
T ss_pred CCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhH
Confidence 7 8999999999999886652235778899999999998777889999999999998643 34577888
Q ss_pred HHHHHHhc
Q 001144 1128 LNLSVRLR 1135 (1141)
Q Consensus 1128 ~~ia~rlR 1135 (1141)
-.|-.++-
T Consensus 547 ~~ll~~L~ 554 (960)
T 1wa5_C 547 EILLKNLI 554 (960)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766653
No 22
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.012 Score=63.82 Aligned_cols=142 Identities=14% Similarity=0.216 Sum_probs=103.3
Q ss_pred HhhHHHHHHHHh-hcCC-hhHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccch--HHHHHHHHhhhcCCCCch
Q 001144 989 INLIGDVAGCVS-IKRP-KEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSL--LEQMVEALCRHVSDESPT 1064 (1141)
Q Consensus 989 ~~GV~lLAram~-~~~~-~~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l--~~~~l~~L~~~l~D~~~~ 1064 (1141)
.+.+..+|+.+. ..-. ++...++-.++..+......=|-.+.+.+..+..+....... ++.++..|...++++|+.
T Consensus 82 ~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~ 161 (249)
T 2qk1_A 82 AQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQ 161 (249)
T ss_dssp HHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChH
Confidence 445666777665 3333 567777777777765544322223333344444433211122 567999999999999999
Q ss_pred hhhhhccccCCccch------hhhhhH-HHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCCCCccchHHHH
Q 001144 1065 VRGLCLRGLVQIPSI------HIHQYA-TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNL 1130 (1141)
Q Consensus 1065 VR~lslrGLgnl~~~------kv~~~~-~~lL~all~~l~d~~~~vvleam~~L~~lL~~l~~~~~~~~l~~i 1130 (1141)
||..++.-|+.++.. ++..|. +.+++.+...++|.+..|.-.|+.+|..+-..++++.+.|++-.+
T Consensus 162 vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 162 IRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999999999988654 245688 999999999999999999999999999999999999999887654
No 23
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=96.06 E-value=0.2 Score=59.62 Aligned_cols=326 Identities=13% Similarity=0.098 Sum_probs=173.2
Q ss_pred HHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhh-HhHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhcccc----
Q 001144 744 LHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETD-VSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNS---- 818 (1141)
Q Consensus 744 i~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~d-V~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~h~~---- 818 (1141)
+-.+++.|.+.+......|+..|..++..........- -..++..+..-|..-..+.+|..+..++..++...++
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 155 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV 155 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 33455666666665556777777777654331110110 1234556666666655589999999999999986543
Q ss_pred ----hhhHHHHhhhhcccccccccccccCCCChhh-----HHHHhhcCc-chHHH-----HHHHHHHHHccCCCccCCCC
Q 001144 819 ----KIVFNEVLATAGKDIVTKDISRLRGGWPMQD-----AFHAFSQHA-VLSFL-----FLEHLISALNQTPFVKGDME 883 (1141)
Q Consensus 819 ----~Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~-----~W~aLa~~~-~l~~~-----vL~~LL~~L~~~p~~~e~~~ 883 (1141)
.++. .|+. +. ..+-|--+ .+..++.+. ..... ++..|+..|...+
T Consensus 156 ~~~~g~i~-~L~~-lL-----------~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~------- 215 (528)
T 4b8j_A 156 VIDHGAVP-IFVK-LL-----------GSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHT------- 215 (528)
T ss_dssp HHHTTHHH-HHHH-HT-----------TCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTC-------
T ss_pred HHhCCcHH-HHHH-Hh-----------cCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCC-------
Confidence 2343 4441 11 11111111 233344442 22222 2344555442110
Q ss_pred CCCCCCCCCCcccchhhHHHHHHHHHHHHhcCCcchHHHHHHhhhHHHHHHHHHHhhhccCCCCCCCCh--hHHHHHHHH
Q 001144 884 KGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEP--LRAILTSFQ 961 (1141)
Q Consensus 884 ~~~~~~~~~~~~~~~~~plaAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P--~~~aleAlk 961 (1141)
. .-+--.|+.+|..+...........+....|.|.-. +. ..+| ...+..||.
T Consensus 216 ---------~----~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~l----L~---------~~~~~v~~~a~~aL~ 269 (528)
T 4b8j_A 216 ---------K----LSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARL----IH---------SNDEEVLTDACWALS 269 (528)
T ss_dssp ---------C----HHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHH----TT---------CCCHHHHHHHHHHHH
T ss_pred ---------C----HHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHH----HC---------CCCHHHHHHHHHHHH
Confidence 0 011346777888877663112333333344433322 11 1133 344555555
Q ss_pred HHHHhhCChhHHHHHHhcCCCC---------chhhhHhhHHHHHHHHhhcCChhHH-----HHHHHHHhhhcCC-cccch
Q 001144 962 AFCECVGDLEMRKILARDGEQN---------DKEKWINLIGDVAGCVSIKRPKEVQ-----TICLILTKSINRQ-QRFQR 1026 (1141)
Q Consensus 962 ~lL~~~g~~~~~~~le~~g~W~---------~~~~~~~GV~lLAram~~~~~~~~~-----~i~~~L~~~L~s~-~~~qR 1026 (1141)
.+. .+..+....+-..|+.. ++..-...+..|+. ++........ +++..|...|+++ ...-|
T Consensus 270 ~l~--~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~n-l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~ 346 (528)
T 4b8j_A 270 YLS--DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGN-IVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIK 346 (528)
T ss_dssp HHT--SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHH-HTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHH
T ss_pred HHH--cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHH-HHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHH
Confidence 543 22222223333333322 22222222222222 2332222222 3466777888877 56666
Q ss_pred hHHHHHHHHhhhccC-CccchHH-HHHHHHhhhcCCCCchhhhhhccccCCccch---hhhhh--HHHHHHHHHhhccCC
Q 001144 1027 EAAAAALSEFVRYSG-GFDSLLE-QMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQY--ATQVLSVILALLDDL 1099 (1141)
Q Consensus 1027 i~a~af~sELL~~~~-~~~~l~~-~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~---kv~~~--~~~lL~all~~l~d~ 1099 (1141)
..|+..+..+..... ....+.+ .++..|.+.+.++++.||.-++..|+|++.+ ....+ ...+++.++..+.+.
T Consensus 347 ~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~ 426 (528)
T 4b8j_A 347 KEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICP 426 (528)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCC
Confidence 777777777765332 1112222 2455666666777899999999999999775 22222 135788999999999
Q ss_pred ChhHHHHHHHHHHHHhccC
Q 001144 1100 DESVQLTAVSCLLTILKSS 1118 (1141)
Q Consensus 1100 ~~~vvleam~~L~~lL~~l 1118 (1141)
+..++..++.+|.+++..-
T Consensus 427 d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 427 DIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998754
No 24
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=95.84 E-value=0.7 Score=55.08 Aligned_cols=326 Identities=11% Similarity=0.150 Sum_probs=171.7
Q ss_pred HHHhccCCCchhHHHHHHHHHHHHH-hhccccchhhH--hHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhcccc---hh
Q 001144 747 CTTAICDRTKQSAEGAIQAVVEFVT-KRGNELSETDV--SRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNS---KI 820 (1141)
Q Consensus 747 ll~~L~d~~~~~~~~A~~~L~~~l~-~~g~~l~e~dV--~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~h~~---~V 820 (1141)
+++++.+.+...-..|+..+..++- ++-+.+ +. | ..++..+..-|..-..+.++..+..+++-||...++ .|
T Consensus 62 ~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi-~~-ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~v 139 (510)
T 3ul1_B 62 IVKGINSNNLESQLQATQAARKLLSREKQPPI-DN-IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 139 (510)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCH-HH-HHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCCCchH-HH-HHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4477777776665556666665553 232222 11 1 123444555566667788999999999999976543 22
Q ss_pred -----hHHHHhhhhcccccccccccccCCCChhh---HH--HHhhcC-cchHHHH-----HHHHHHHHccCCCccCCCCC
Q 001144 821 -----VFNEVLATAGKDIVTKDISRLRGGWPMQD---AF--HAFSQH-AVLSFLF-----LEHLISALNQTPFVKGDMEK 884 (1141)
Q Consensus 821 -----v~~~LL~~~~~~~~~~d~~~~~~plP~d~---~W--~aLa~~-~~l~~~v-----L~~LL~~L~~~p~~~e~~~~ 884 (1141)
|. .|+. +. ..+-+--+ +| .-++.+ +..-..+ +..|+..|+.....
T Consensus 140 v~~GaIp-~Lv~-lL-----------~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~------ 200 (510)
T 3ul1_B 140 VDGGAIP-AFIS-LL-----------ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLS------ 200 (510)
T ss_dssp HHTTHHH-HHHH-HT-----------TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGG------
T ss_pred HHCCCHH-HHHH-HH-----------cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccch------
Confidence 22 3331 11 11111111 22 223443 3333333 34566655521100
Q ss_pred CCCCCCCCCcccchhhHHHHHHHHHHHHhcCCc-chHHHHHHhhhHHHHHHHHHHhhhccCCCCCCCCh--hHHHHHHHH
Q 001144 885 GDYSSHSADTWIDDDILQAAILALTAFFRGGGK-VGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEP--LRAILTSFQ 961 (1141)
Q Consensus 885 ~~~~~~~~~~~~~~~~plaAt~aL~Ell~~~~~-~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P--~~~aleAlk 961 (1141)
. ...-.--.|+.+|..+....+. .....+....|-|.-.| . ..++ ...+..|+.
T Consensus 201 -------~---~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL--------~-----~~~~~v~~~A~~aL~ 257 (510)
T 3ul1_B 201 -------T---LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL--------H-----HNDPEVLADSCWAIS 257 (510)
T ss_dssp -------G---SCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT--------T-----CSCHHHHHHHHHHHH
T ss_pred -------h---hhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH--------h-----cCCHHHHHHHHHHHH
Confidence 0 0000112466677766654311 11223344444333211 1 1123 334555655
Q ss_pred HHHHhhCChhHHHHHHhcCCCC---------chhhhHhhHHHHHHHHhhcCChhHHH-----HHHHHHhhhcCCcccchh
Q 001144 962 AFCECVGDLEMRKILARDGEQN---------DKEKWINLIGDVAGCVSIKRPKEVQT-----ICLILTKSINRQQRFQRE 1027 (1141)
Q Consensus 962 ~lL~~~g~~~~~~~le~~g~W~---------~~~~~~~GV~lLAram~~~~~~~~~~-----i~~~L~~~L~s~~~~qRi 1027 (1141)
.+.. +..+....+...|+-. +.......+..|+ .++......... .+..|...|+++.+.-|.
T Consensus 258 ~L~~--~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~-nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~ 334 (510)
T 3ul1_B 258 YLTD--GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG-NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQK 334 (510)
T ss_dssp HHTS--SCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH-HHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHH
T ss_pred HHhh--chhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHH-HhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHH
Confidence 5432 2223333333334322 2222222222222 223333333333 334566677888877778
Q ss_pred HHHHHHHHhhhccC-CccchHHH-HHHHHhhhcCCCCchhhhhhccccCCccch----hhh-hhHHHHHHHHHhhccCCC
Q 001144 1028 AAAAALSEFVRYSG-GFDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPSI----HIH-QYATQVLSVILALLDDLD 1100 (1141)
Q Consensus 1028 ~a~af~sELL~~~~-~~~~l~~~-~l~~L~~~l~D~~~~VR~lslrGLgnl~~~----kv~-~~~~~lL~all~~l~d~~ 1100 (1141)
.|+..++.+..... ....+.+. ++..|.+.+.++++.||.-+...|+|++.+ ++. .....+++.+.+.++.+|
T Consensus 335 ~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d 414 (510)
T 3ul1_B 335 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD 414 (510)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred HHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC
Confidence 88888888766543 22222232 677788888999999999999999999875 111 122356889999999999
Q ss_pred hhHHHHHHHHHHHHhccCC
Q 001144 1101 ESVQLTAVSCLLTILKSSS 1119 (1141)
Q Consensus 1101 ~~vvleam~~L~~lL~~l~ 1119 (1141)
.+++..++.+|.+|+...+
T Consensus 415 ~~i~~~~L~aL~nil~~~~ 433 (510)
T 3ul1_B 415 TKIIQVILDAISNIFQAAE 433 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 9999999999999997544
No 25
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=95.57 E-value=2 Score=50.84 Aligned_cols=385 Identities=15% Similarity=0.129 Sum_probs=192.2
Q ss_pred hhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCChhhhhhhhcchhHHHHHhhcCCCCCChhHHHH
Q 001144 647 LGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFNR 726 (1141)
Q Consensus 647 lG~lvg~l~p~C~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~ 726 (1141)
+-.++..+ .++++++|..|..++..+++ . .. .. ..+... .-..+..+++.++.. ++..+-..
T Consensus 76 l~~lv~~L----~s~~~~~~~~A~~~L~~l~s------~-~~--~~-~~~~~~-~~g~v~~Lv~lL~~~---~~~~v~~~ 137 (528)
T 4b8j_A 76 LPAMIGGV----YSDDNNLQLEATTQFRKLLS------I-ER--SP-PIEEVI-QSGVVPRFVQFLTRE---DFPQLQFE 137 (528)
T ss_dssp HHHHHHHH----TSSCHHHHHHHHHHHHHHHT------C-SS--SC-CHHHHH-HTTCHHHHHHHHTCT---TCHHHHHH
T ss_pred HHHHHHHH----cCCCHHHHHHHHHHHHHHhc------C-CC--Cc-hHHHHH-HCCCHHHHHHHhCCC---CCHHHHHH
Confidence 55556554 46789999999999987751 1 00 00 101111 112233344443321 22444445
Q ss_pred HHHHHHhhCCh-HHHHH------HHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHh--HHHHHHHHHhhhcC
Q 001144 727 IVSSVCILLTK-DELVA------TLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVS--RTTQSLLSAAVHIT 797 (1141)
Q Consensus 727 i~~~~~k~L~~-~el~~------li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~--eIv~~i~~~L~~i~ 797 (1141)
.+..++..-.. .+... .+-.++.-|.+++......|+..|..+... +.+.... +. .++..+...|..-.
T Consensus 138 A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~-~~~~~~~-i~~~g~l~~Ll~lL~~~~ 215 (528)
T 4b8j_A 138 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGD-SPKCRDL-VLANGALLPLLAQLNEHT 215 (528)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHT-CHHHHHH-HHHTTCHHHHHHTCCTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-ChhhHHH-HHHCCcHHHHHHHHhcCC
Confidence 55555444332 22222 444566777776666666777777766543 1222111 22 25666777775557
Q ss_pred cHHHHHHHHHHHHHhhhcccchhhHHHHhhhhcccccccccccccCCCChhhHHHHhhcCcchHHHHHHHHHHHHccCCC
Q 001144 798 DKHLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPF 877 (1141)
Q Consensus 798 ~~~~r~~~l~ai~lLa~~h~~~Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~aLa~~~~l~~~vL~~LL~~L~~~p~ 877 (1141)
++.++..+..++..|+...+..... .. ..++..|+..|...
T Consensus 216 ~~~v~~~a~~~L~~L~~~~~~~~~~--~~-----------------------------------~~~l~~L~~lL~~~-- 256 (528)
T 4b8j_A 216 KLSMLRNATWTLSNFCRGKPQPSFE--QT-----------------------------------RPALPALARLIHSN-- 256 (528)
T ss_dssp CHHHHHHHHHHHHHHHCSSSCCCHH--HH-----------------------------------TTHHHHHHHHTTCC--
T ss_pred CHHHHHHHHHHHHHHHcCCCCCcHH--HH-----------------------------------HHHHHHHHHHHCCC--
Confidence 7889999999999888875432221 11 12233334433310
Q ss_pred ccCCCCCCCCCCCCCCcccchhhHHHHHHHHHHHHhcCCcchHHHH-H-HhhhHHHHHHHHHHhhhccCCCCCCCCh--h
Q 001144 878 VKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAV-E-KSYAPVLAALTLQLGSCHGLASSGQHEP--L 953 (1141)
Q Consensus 878 ~~e~~~~~~~~~~~~~~~~~~~~plaAt~aL~Ell~~~~~~~~~av-~-~~fp~Lf~aLL~ql~~~~~~~~~~~~~P--~ 953 (1141)
+ .-+-..|..+|+.+-...+ +....+ . ...|.|.-.| . ..+| .
T Consensus 257 ---~----------------~~v~~~a~~aL~~l~~~~~-~~~~~~~~~g~v~~Lv~lL----~---------~~~~~v~ 303 (528)
T 4b8j_A 257 ---D----------------EEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELL----L---------HPSPSVL 303 (528)
T ss_dssp ---C----------------HHHHHHHHHHHHHHTSSCH-HHHHHHHHTTCHHHHHHHT----T---------CSCHHHH
T ss_pred ---C----------------HHHHHHHHHHHHHHHcCCH-HHHHHHHHcCHHHHHHHHH----c---------CCChhHH
Confidence 0 0013456666666554441 111111 1 1222222111 0 0122 1
Q ss_pred HHHHHHHHHHHHhhCChhHHHHHHhcCCCC----------chhhhHhhHHHHHHHHhhcCChhHH-----HHHHHHHhhh
Q 001144 954 RAILTSFQAFCECVGDLEMRKILARDGEQN----------DKEKWINLIGDVAGCVSIKRPKEVQ-----TICLILTKSI 1018 (1141)
Q Consensus 954 ~~aleAlk~lL~~~g~~~~~~~le~~g~W~----------~~~~~~~GV~lLAram~~~~~~~~~-----~i~~~L~~~L 1018 (1141)
..++.++..+.. +.......+-..|+.. ++..-.+++..|+. ++......+. +++..|+..+
T Consensus 304 ~~a~~~L~nl~~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~n-l~~~~~~~~~~~~~~~~i~~L~~lL 380 (528)
T 4b8j_A 304 IPALRTVGNIVT--GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISN-ITAGNKDQIQAVINAGIIGPLVNLL 380 (528)
T ss_dssp HHHHHHHHHHTT--SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHH-HHTSCHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHH-HHCCCHHHHHHHHHCCCHHHHHHHH
Confidence 233334333322 2222222222222211 11222333333333 2323333332 3345666777
Q ss_pred cCCcccchhHHHHHHHHhhhc--cCCccchHHH-HHHHHhhhcCCCCchhhhhhccccCCccch--h--------hhhhH
Q 001144 1019 NRQQRFQREAAAAALSEFVRY--SGGFDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPSI--H--------IHQYA 1085 (1141)
Q Consensus 1019 ~s~~~~qRi~a~af~sELL~~--~~~~~~l~~~-~l~~L~~~l~D~~~~VR~lslrGLgnl~~~--k--------v~~~~ 1085 (1141)
++....-|..|+..+.-+... +.....+.+. .+..|.+-+.++++.|+..++.+|+|+... + ...|.
T Consensus 381 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~ 460 (528)
T 4b8j_A 381 QTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFS 460 (528)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHH
T ss_pred hcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHH
Confidence 777666777777777777765 2222222222 667788888899999999999999999654 1 11233
Q ss_pred HHH-----HHHHHhhccCCChhHHHHHHHHHHHHhccCCCCCccch
Q 001144 1086 TQV-----LSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPI 1126 (1141)
Q Consensus 1086 ~~l-----L~all~~l~d~~~~vvleam~~L~~lL~~l~~~~~~~~ 1126 (1141)
..+ +..+.....+.+++|...|...|.+++..=++.+..+.
T Consensus 461 ~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~~~~~~~~ 506 (528)
T 4b8j_A 461 QMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEEDDTMGAT 506 (528)
T ss_dssp HHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccccccc
Confidence 322 55666777777889999999999999887666555544
No 26
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=95.52 E-value=2 Score=49.19 Aligned_cols=356 Identities=12% Similarity=0.081 Sum_probs=192.5
Q ss_pred hhhhhhcccccchhHHHHHHHhhhcCC-Cchhhhc--chHHHHHHHHHhhhhc-cHHHHHHHHHHHHHHhhccc--ccCc
Q 001144 2 FLLNKCRLKEEHLSVGALYVLKHLLPR-SSEAWHS--KRPLLLEAVKSLLDEQ-NLAVQKAISELIVVMASHCY--LIGP 75 (1141)
Q Consensus 2 Fll~~l~~~~E~~Rvg~L~vlrhlins-~~~~~~~--k~~~i~~~vk~~l~d~-~~kVr~al~~~I~ama~~~y--l~~~ 75 (1141)
+|...++++++..|..++..||.++.. ..+.+.. +.+-++..+-.+|.+. +..||...+.++..++.+.. ...-
T Consensus 24 ~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 103 (450)
T 2jdq_A 24 DMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIV 103 (450)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 366788888999999999999998752 2333322 1113455555556555 89999999999999887431 1100
Q ss_pred ccccceeeeeccccccCccccccccccccCCCCCchHHHHHHHHHHHHHhccchhhh-----HhhHHHHHhhcccccccc
Q 001144 76 SGELFVEYLVRHCALSDQKKYVNESSKVKIGAFCPTELRAICEKGLLLLTITIPEMQ-----HILWPLLLKMIIPRAYTS 150 (1141)
Q Consensus 76 ~g~~~i~fiv~q~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~~~L~ll~ttv~~m~-----~vLWP~LL~~i~p~~yT~ 150 (1141)
-....+..+++.+.- +...+|..+..+|.-++..-+... .-.-|.|+.++-...-..
T Consensus 104 ~~~~~i~~L~~lL~~------------------~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~ 165 (450)
T 2jdq_A 104 IQAGAVPIFIELLSS------------------EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLT 165 (450)
T ss_dssp HHTTHHHHHHHHTTC------------------SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHH
T ss_pred HhCCCHHHHHHHHcC------------------CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHH
Confidence 001134455443210 134788888888888876543222 235788888887544455
Q ss_pred hhhhHHHHHHHHHhhhcCCCCCccccccCCCCCCCHHHHHHHHHHHhcCcccchhhHHHHHHHHHhhCCCCCcchhhhHH
Q 001144 151 AAATVCRCISELCRHRSSSSNVMLSECKARDDIPNPEELFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLFWQ 230 (1141)
Q Consensus 151 al~~ick~l~~La~k~~~~~~~~~i~~~~~~~lPsp~~llaRllvl~~~P~~~~~~g~~~L~lL~~l~~~ih~~l~~~W~ 230 (1141)
.....+.+|.+|+....... +. .. + ..++-.|+-++.++. ..--..+...|.++...-.+....+.+
T Consensus 166 v~~~a~~~L~~l~~~~~~~~-~~--~~---~-----~~~l~~L~~~l~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~ 232 (450)
T 2jdq_A 166 MTRNAVWALSNLCRGKSPPP-EF--AK---V-----SPCLNVLSWLLFVSD--TDVLADACWALSYLSDGPNDKIQAVID 232 (450)
T ss_dssp HHHHHHHHHHHHHCCSSSCC-CG--GG---T-----GGGHHHHHHHTTCCC--HHHHHHHHHHHHHHTSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCC-CH--HH---H-----HHHHHHHHHHHccCC--HHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 66677888888875331100 00 00 0 122333444444432 233455667777776543333222222
Q ss_pred -HhhhhhhhcccccccCCCCcchHhhHHHHHHHHHHHhhhhhccchHHHHHHHHHHhhhccCCCChhhHHHHHHHHHHHH
Q 001144 231 -DEIPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAESLDVVQETDWLISLGNAFTEQYVLYTPDDDHSALLHRCLGILL 309 (1141)
Q Consensus 231 -~~IP~Ll~~L~~~~~~~~~~~~q~~We~~Ll~fL~~sl~~i~d~~W~~~L~~el~~ql~~y~~~~~eK~fL~k~lG~~L 309 (1141)
.-+|.|++.|... + |+-+ .-.-.+|..+... .+..+..+.
T Consensus 233 ~~~i~~L~~ll~~~------~-----~~v~--~~a~~~L~~l~~~-------------------~~~~~~~~~------- 273 (450)
T 2jdq_A 233 AGVCRRLVELLMHN------D-----YKVV--SPALRAVGNIVTG-------------------DDIQTQVIL------- 273 (450)
T ss_dssp TTTHHHHHHHTTCS------C-----HHHH--HHHHHHHHHHTTS-------------------CHHHHHHHH-------
T ss_pred cCcHHHHHHHHCCC------c-----hhHH--HHHHHHHHHHhhC-------------------ChHHHHHHH-------
Confidence 3467777666532 1 2111 0011111111110 111111100
Q ss_pred hhcCChhHHHHHHHHHHHhcccCCccchhhHHHHHHHHhhcCHHHHHHHHHHHHhhhccccchhhhccccCcccccchHh
Q 001144 310 QKVADRNYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDD 389 (1141)
Q Consensus 310 ~~~~~~~~V~~~L~~ll~~~~~~~~~ereG~A~~~G~~A~~Hld~vL~~Le~~~k~~~~~~~~~~~~~~k~~~~~~e~~~ 389 (1141)
+...+ ..|..++. +.++.-|+..+.++|-.+.+.-+..-. +.+. ..+...+..+++.. .+
T Consensus 274 ----~~~~l-~~L~~ll~---~~~~~vr~~a~~~L~~l~~~~~~~~~~----~~~~---~~l~~L~~~l~~~~-----~~ 333 (450)
T 2jdq_A 274 ----NCSAL-QSLLHLLS---SPKESIKKEACWTISNITAGNRAQIQT----VIDA---NIFPALISILQTAE-----FR 333 (450)
T ss_dssp ----TTTHH-HHHHHHTT---CSSHHHHHHHHHHHHHHTTSCHHHHHH----HHHT---THHHHHHHHHHHSC-----HH
T ss_pred ----HCccH-HHHHHHHc---CCCHHHHHHHHHHHHHHHcCCHHHHHH----HHHC---CCHHHHHHHHhcCC-----HH
Confidence 11112 23334443 345667888899999988765433221 1211 12222333333322 35
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Q 001144 390 IHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRA 448 (1141)
Q Consensus 390 ~ks~l~l~YG~va~~ap~~~l~~rve~~I~~~i~~~~~~~kd~~lK~s~l~si~~i~~a 448 (1141)
+|....-+.|.++....++.+..-++..++..++.. +...++.++...+.++..+...
T Consensus 334 v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 334 TRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDL-LTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHG-GGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHH-hcCCCHHHHHHHHHHHHHHHHh
Confidence 788888888999988766666555566666655543 3556888999999999888774
No 27
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=95.52 E-value=1.3 Score=52.91 Aligned_cols=329 Identities=11% Similarity=0.146 Sum_probs=174.1
Q ss_pred HHHHHHhccCCCchhHHHHHHHHHHHHH-hhccccchhhH--hHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhcccch-
Q 001144 744 LHSCTTAICDRTKQSAEGAIQAVVEFVT-KRGNELSETDV--SRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSK- 819 (1141)
Q Consensus 744 i~tll~~L~d~~~~~~~~A~~~L~~~l~-~~g~~l~e~dV--~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~h~~~- 819 (1141)
+..+++++.+.+...-..|...+..++. .+.+-+ +. | ..++..+..-|..-..+.++..+..+++-+|.+.++.
T Consensus 78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i-~~-ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPI-DN-IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCH-HH-HHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchH-HH-HHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 3445677777766555566666665553 222222 22 2 2345556666666677899999999999999865532
Q ss_pred --h-----hHHHHhhhhcccccccccccccCCCChhh---HH--HHhhcC-cchHHHH-----HHHHHHHHccCCCccCC
Q 001144 820 --I-----VFNEVLATAGKDIVTKDISRLRGGWPMQD---AF--HAFSQH-AVLSFLF-----LEHLISALNQTPFVKGD 881 (1141)
Q Consensus 820 --V-----v~~~LL~~~~~~~~~~d~~~~~~plP~d~---~W--~aLa~~-~~l~~~v-----L~~LL~~L~~~p~~~e~ 881 (1141)
| |. .|+. +. ..+-+--+ +| .-++.+ +..-..+ +..|+..|......
T Consensus 156 ~~vv~~Gaip-~Lv~-LL-----------~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~--- 219 (529)
T 3tpo_A 156 KAVVDGGAIP-AFIS-LL-----------ASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLS--- 219 (529)
T ss_dssp HHHHHTTHHH-HHHH-HT-----------TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGG---
T ss_pred HHHHHCCCHH-HHHH-HH-----------cCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchh---
Confidence 2 22 2321 11 11111111 22 233443 3333333 34455554421100
Q ss_pred CCCCCCCCCCCCcccchhhHHHHHHHHHHHHhcCCc-chHHHHHHhhhHHHHHHHHHHhhhccCCCCCCCCh--hHHHHH
Q 001144 882 MEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGK-VGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEP--LRAILT 958 (1141)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~~plaAt~aL~Ell~~~~~-~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P--~~~ale 958 (1141)
+. ..-.--.|+.+|..+....+. .....+....|-|.-.| . ..+| ...+.+
T Consensus 220 ----------~~---~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL--------~-----~~~~~v~~~a~~ 273 (529)
T 3tpo_A 220 ----------TL---ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL--------H-----HNDPEVLADSCW 273 (529)
T ss_dssp ----------GS---CHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT--------T-----SSCHHHHHHHHH
T ss_pred ----------Hh---HHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh--------c-----CCcHHHHHHHHH
Confidence 00 000112466677766654311 12233344444433211 1 1123 234555
Q ss_pred HHHHHHHhhCChhHHHHHHhcCCCC---------chhhhHhhHHHHHHHHhhcCChhHH-----HHHHHHHhhhcCCccc
Q 001144 959 SFQAFCECVGDLEMRKILARDGEQN---------DKEKWINLIGDVAGCVSIKRPKEVQ-----TICLILTKSINRQQRF 1024 (1141)
Q Consensus 959 Alk~lL~~~g~~~~~~~le~~g~W~---------~~~~~~~GV~lLAram~~~~~~~~~-----~i~~~L~~~L~s~~~~ 1024 (1141)
|+..+.. +..+....+...|+.. +.......+..|+ .++........ +.+..|...++++...
T Consensus 274 aL~~l~~--~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~-nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~ 350 (529)
T 3tpo_A 274 AISYLTD--GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG-NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTN 350 (529)
T ss_dssp HHHHHHS--SCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH-HHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHH
T ss_pred HHHHhhh--hhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHH-HHHccchHHHHHHhhcccHHHHHHHHcCCCHH
Confidence 5554432 2233333333344422 1112222222222 23333332222 2345677788888877
Q ss_pred chhHHHHHHHHhhhccC-CccchHHH-HHHHHhhhcCCCCchhhhhhccccCCccch----hhhh-hHHHHHHHHHhhcc
Q 001144 1025 QREAAAAALSEFVRYSG-GFDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPSI----HIHQ-YATQVLSVILALLD 1097 (1141)
Q Consensus 1025 qRi~a~af~sELL~~~~-~~~~l~~~-~l~~L~~~l~D~~~~VR~lslrGLgnl~~~----kv~~-~~~~lL~all~~l~ 1097 (1141)
-|..|+..++.+-.... ....+.+. ++..|...+.++++.||.-+...|+|++.+ .+.. ....+++.+++.|.
T Consensus 351 i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~ 430 (529)
T 3tpo_A 351 IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 430 (529)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhc
Confidence 77778878887765433 22222332 666777888899999999999999999765 1111 12346889999999
Q ss_pred CCChhHHHHHHHHHHHHhccCC
Q 001144 1098 DLDESVQLTAVSCLLTILKSSS 1119 (1141)
Q Consensus 1098 d~~~~vvleam~~L~~lL~~l~ 1119 (1141)
..|.+++.-++.+|.+|+...+
T Consensus 431 ~~d~~i~~~~L~aL~nil~~~~ 452 (529)
T 3tpo_A 431 AKDTKIIQVILDAISNIFQAAE 452 (529)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999987544
No 28
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=95.45 E-value=1.1 Score=52.80 Aligned_cols=396 Identities=11% Similarity=0.077 Sum_probs=188.0
Q ss_pred hhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCChhhhhhhhcchhHHHHHhhcCCCCCChhHHH
Q 001144 646 CLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFN 725 (1141)
Q Consensus 646 ~lG~lvg~l~p~C~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~ 725 (1141)
.+..++.++ .++++.+|..|..++..+- . .. + ........-..+..++..++.. ++..+-.
T Consensus 18 ~i~~Lv~lL----~~~~~~v~~~A~~~L~~l~---~---~~-----~-~~~~~~~~~~~i~~Lv~~L~~~---~~~~~~~ 78 (529)
T 1jdh_A 18 AIPELTKLL----NDEDQVVVNKAAVMVHQLS---K---KE-----A-SRHAIMRSPQMVSAIVRTMQNT---NDVETAR 78 (529)
T ss_dssp HHHHHHHHH----TCSCHHHHHHHHHHHHHHH---T---SH-----H-HHHHHHTCHHHHHHHHHHHHHC---CCHHHHH
T ss_pred hHHHHHHHh----CCCCHHHHHHHHHHHHHHH---c---CC-----c-cHHHHHhCcchHHHHHHHHhcC---CCHHHHH
Confidence 455555544 4889999999999988774 1 00 0 0000000001123344443332 2344444
Q ss_pred HHHHHHHhhCChHHHHH------HHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhH--hHHHHHHHHHhhhcC
Q 001144 726 RIVSSVCILLTKDELVA------TLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDV--SRTTQSLLSAAVHIT 797 (1141)
Q Consensus 726 ~i~~~~~k~L~~~el~~------li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV--~eIv~~i~~~L~~i~ 797 (1141)
..+..+++.-...+... .+-.+++-|.+++......|+..|..+.......- .. + ...+..+..-+.+ .
T Consensus 79 ~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~-i~~~g~i~~L~~ll~~-~ 155 (529)
T 1jdh_A 79 CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK-MA-VRLAGGLQKMVALLNK-T 155 (529)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH-HH-HHHHTHHHHHHHGGGC-C
T ss_pred HHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH-HH-HHHcCCHHHHHHHHhc-C
Confidence 45555554332222222 44456677777766555677777777765422111 11 2 3456666666665 5
Q ss_pred cHHHHHHHHHHHHHhhhcccc--------hhhHHHHhhhhcccccccccccccCCCChhhHHHH------hhcCcchHHH
Q 001144 798 DKHLRLETLGAISCLAENTNS--------KIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHA------FSQHAVLSFL 863 (1141)
Q Consensus 798 ~~~~r~~~l~ai~lLa~~h~~--------~Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~a------La~~~~l~~~ 863 (1141)
+..++..+..++..|+..+++ ..+. .|+.. . +.+-+-+..|.+ ++.++.....
T Consensus 156 ~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~-~L~~l-l-----------~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 222 (529)
T 1jdh_A 156 NVKFLAITTDCLQILAYGNQESKLIILASGGPQ-ALVNI-M-----------RTYTYEKLLWTTSRVLKVLSVCSSNKPA 222 (529)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH-HHHHH-H-----------HHCCCHHHHHHHHHHHHHHTTSTTHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHH-HHHHH-H-----------HhCChHHHHHHHHHHHHHHhcCcccHHH
Confidence 578888888888888875431 2232 33311 1 111122234433 3334333332
Q ss_pred H-----HHHHHHHHccCCCccCCCCCCCCCCCCCCcccchhhHHHHHHHHHHHHhcCCcchHHHHHHhhhHHHHHHHHHH
Q 001144 864 F-----LEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQL 938 (1141)
Q Consensus 864 v-----L~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~plaAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql 938 (1141)
+ +..|+..++.. .. -.--.|+.+|..+-... .....+....|.|.-. +
T Consensus 223 ~~~~g~~~~L~~ll~~~-----------------~~----~~~~~a~~~L~~l~~~~--~~~~~~~~~i~~L~~l----l 275 (529)
T 1jdh_A 223 IVEAGGMQALGLHLTDP-----------------SQ----RLVQNCLWTLRNLSDAA--TKQEGMEGLLGTLVQL----L 275 (529)
T ss_dssp HHHTTHHHHHHTTTTSS-----------------CH----HHHHHHHHHHHHHHTTC--TTCSCCHHHHHHHHHH----T
T ss_pred HHHCCCHHHHHHHHhCC-----------------Ch----HHHHHHHHHHHHHhcCC--hhhHHHHhHHHHHHHH----H
Confidence 2 33333333211 00 01234556666555444 2222333333433321 1
Q ss_pred hhhccCCCCCCCCh--hHHHHHHHHHHHHhhCChhHHHHHHhcCCCC-----------chhhhHhhHHHHHHHHhhcCCh
Q 001144 939 GSCHGLASSGQHEP--LRAILTSFQAFCECVGDLEMRKILARDGEQN-----------DKEKWINLIGDVAGCVSIKRPK 1005 (1141)
Q Consensus 939 ~~~~~~~~~~~~~P--~~~aleAlk~lL~~~g~~~~~~~le~~g~W~-----------~~~~~~~GV~lLAram~~~~~~ 1005 (1141)
+ ..+| ...+..++..+.. +..+....+-..|+.. .++.-..++..|+. ++..++.
T Consensus 276 ~---------~~~~~v~~~a~~~L~~L~~--~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~n-l~~~~~~ 343 (529)
T 1jdh_A 276 G---------SDDINVVTCAAGILSNLTC--NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH-LTSRHQE 343 (529)
T ss_dssp T---------CSCHHHHHHHHHHHHHHTT--TCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTSSSTT
T ss_pred c---------CCCHHHHHHHHHHHHHHhc--CCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHH-HHcCCch
Confidence 1 1123 2345555555422 2222222233233321 01222333333333 2222221
Q ss_pred h--H------HHHHHHHHhhhcCCcc-cchhHHHHHHHHhhhccCCccchHHH-HHHHHhhhcCCCCchhhhhhccccCC
Q 001144 1006 E--V------QTICLILTKSINRQQR-FQREAAAAALSEFVRYSGGFDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQ 1075 (1141)
Q Consensus 1006 ~--~------~~i~~~L~~~L~s~~~-~qRi~a~af~sELL~~~~~~~~l~~~-~l~~L~~~l~D~~~~VR~lslrGLgn 1075 (1141)
. . .+.+..+...|+++.+ .-|..|+..+..+..++.....+.+. ++..|.+.+.++++.||.-+..+++|
T Consensus 344 ~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n 423 (529)
T 1jdh_A 344 AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 423 (529)
T ss_dssp HHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCc
Confidence 0 1 1345667778887764 66667777888877766533333333 66677777778888888877777776
Q ss_pred --ccch----hh-------------------hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHh
Q 001144 1076 --IPSI----HI-------------------HQYATQVLSVILALLDDLDESVQLTAVSCLLTIL 1115 (1141)
Q Consensus 1076 --l~~~----kv-------------------~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL 1115 (1141)
+..+ ++ ..-...+++.++..+.+.+++|...|...|.++.
T Consensus 424 ~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~ 488 (529)
T 1jdh_A 424 QQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 488 (529)
T ss_dssp --CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred hhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHh
Confidence 2211 00 0011234577888888888888888888887765
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=95.39 E-value=0.21 Score=52.54 Aligned_cols=115 Identities=21% Similarity=0.190 Sum_probs=87.6
Q ss_pred HHHHHHHhhhcCCcccchhHHHHHHHHhhhccC-CccchHHH-HHHHHhhhcCCCCchhhhhhccccCCccch--h-h-h
Q 001144 1009 TICLILTKSINRQQRFQREAAAAALSEFVRYSG-GFDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPSI--H-I-H 1082 (1141)
Q Consensus 1009 ~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~-~~~~l~~~-~l~~L~~~l~D~~~~VR~lslrGLgnl~~~--k-v-~ 1082 (1141)
+.+..+...++++...-|..|+..+..+..... ....+.+. .+..|.+.+.++++.||..+++.|+|++.+ . . .
T Consensus 128 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 207 (252)
T 4hxt_A 128 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKA 207 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 457778888888887778888888888877543 21222222 778888889999999999999999999874 1 1 1
Q ss_pred hhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCCCCc
Q 001144 1083 QYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAV 1123 (1141)
Q Consensus 1083 ~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~l~~~~~ 1123 (1141)
.....+++.++..+.+.+..+..+|+.+|+++...-+....
T Consensus 208 l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 248 (252)
T 4hxt_A 208 IVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLEHH 248 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCCC-
T ss_pred HHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcccc
Confidence 12345788999999998999999999999999887665543
No 30
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=95.04 E-value=3.2 Score=50.80 Aligned_cols=198 Identities=8% Similarity=-0.015 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHhhhHHHHHHHHHHhhhccCCCCCCCChhHHHHHHHHHHHHhhCC---hhHHHHHH
Q 001144 901 LQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGD---LEMRKILA 977 (1141)
Q Consensus 901 plaAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~lL~~~g~---~~~~~~le 977 (1141)
-..|..+|..+.... ....++..+.+.+|-.| .+ ..++ +....|+..++.-+.. ..++..+.
T Consensus 346 ry~aL~~l~~l~~~~--~~~~~~~~~~~~i~~~L----~~--------d~d~-~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~ 410 (621)
T 2vgl_A 346 RYLALESMCTLASSE--FSHEAVKTHIETVINAL----KT--------ERDV-SVRQRAVDLLYAMCDRSNAQQIVAEML 410 (621)
T ss_dssp HHHHHHHHHHHTTCT--TTHHHHHTTHHHHHHHH----TT--------CCCH-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHh----cc--------CCCH-hHHHHHHHHHHHHcChhhHHHHHHHHH
Confidence 356888888887765 33456666666665544 00 1233 4455555555444433 33333333
Q ss_pred hcCCCCchhhhHhhHHHHHHHHhhcCChhHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhh
Q 001144 978 RDGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRH 1057 (1141)
Q Consensus 978 ~~g~W~~~~~~~~GV~lLAram~~~~~~~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~ 1057 (1141)
..-.-.+.+.-.+.|.-+++.-.++ ++.....+..+..+++...+.-.--++..+.+++...+ .+.+..+..|.+.
T Consensus 411 ~yl~~~d~~~~~~~v~~I~~la~k~-~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~---~~~~~~~~~l~~~ 486 (621)
T 2vgl_A 411 SYLETADYSIREEIVLKVAILAEKY-AVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRD---DVQGYAAKTVFEA 486 (621)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHH-CSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGC---SCHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCCh---hHHHHHHHHHHHH
Confidence 2110013333344454444432232 33455666666666654333222223345556665432 2334466777888
Q ss_pred cCCCCchhhhhhccccCCccch---hhhh--h--HHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCC
Q 001144 1058 VSDESPTVRGLCLRGLVQIPSI---HIHQ--Y--ATQVLSVILALLDDLDESVQLTAVSCLLTILKSSS 1119 (1141)
Q Consensus 1058 l~D~~~~VR~lslrGLgnl~~~---kv~~--~--~~~lL~all~~l~d~~~~vvleam~~L~~lL~~l~ 1119 (1141)
+.||... ..-+++.+++.-. .+.. + ...++..+.+.+.+.+..|...++.++.|+..+..
T Consensus 487 l~~~~~~--~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p 553 (621)
T 2vgl_A 487 LQAPACH--ENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFP 553 (621)
T ss_dssp HTSSSCC--HHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCG
T ss_pred HcCccch--HHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHCh
Confidence 8887532 1122222222111 1111 1 12557778888777788999999999999877653
No 31
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=94.98 E-value=0.065 Score=54.80 Aligned_cols=109 Identities=16% Similarity=0.192 Sum_probs=86.5
Q ss_pred hcCChhHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccch-
Q 001144 1001 IKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI- 1079 (1141)
Q Consensus 1001 ~~~~~~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~- 1079 (1141)
..+|..++.|+.-+...+.|+++.+|.+|.-|++-+=-... ..+-+.+..|..-+.|.|..||.-++..|++++..
T Consensus 136 ranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~---~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~n 212 (253)
T 2db0_A 136 KANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSF---KYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLN 212 (253)
T ss_dssp HHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH---HHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC
T ss_pred HhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCc---cccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcC
Confidence 36888999999999999999999999999999887522221 11222566788888999999999999999999875
Q ss_pred -hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhc
Q 001144 1080 -HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILK 1116 (1141)
Q Consensus 1080 -kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~ 1116 (1141)
|+| .++...+.-|+|+++.|.-.--.||++++-
T Consensus 213 pklR----kii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 213 DKLR----KVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHH----HHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 443 335667788999999888888888888864
No 32
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=94.91 E-value=0.04 Score=58.85 Aligned_cols=99 Identities=13% Similarity=0.192 Sum_probs=46.0
Q ss_pred hcCCcccchhHHHHHHHHhhhc-cC-CccchHHHHHHHHhhhcC-CCCchhhhhhccccCCccch---hhhhhHHHHHHH
Q 001144 1018 INRQQRFQREAAAAALSEFVRY-SG-GFDSLLEQMVEALCRHVS-DESPTVRGLCLRGLVQIPSI---HIHQYATQVLSV 1091 (1141)
Q Consensus 1018 L~s~~~~qRi~a~af~sELL~~-~~-~~~~l~~~~l~~L~~~l~-D~~~~VR~lslrGLgnl~~~---kv~~~~~~lL~a 1091 (1141)
+++..-..|..|+--+..++.. +. .... ..+++..|.+.+. |+|+.||..+++++|.++.+ .+..|...++++
T Consensus 24 l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ 102 (242)
T 2qk2_A 24 LEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPS 102 (242)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3344444455555444444444 22 1111 1334555555552 55555555555555555433 333455555555
Q ss_pred HHhhccCCChhHHHHHHHHHHHHhcc
Q 001144 1092 ILALLDDLDESVQLTAVSCLLTILKS 1117 (1141)
Q Consensus 1092 ll~~l~d~~~~vvleam~~L~~lL~~ 1117 (1141)
++..+.|++..|.-.|..+|..+...
T Consensus 103 ll~~l~d~~~~vr~~a~~aL~~~~~~ 128 (242)
T 2qk2_A 103 LLEKFKEKKPNVVTALREAIDAIYAS 128 (242)
T ss_dssp HHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHc
Confidence 55555555444444444444444443
No 33
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=94.33 E-value=1.1 Score=56.37 Aligned_cols=293 Identities=14% Similarity=0.125 Sum_probs=159.1
Q ss_pred HHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhcccchhhHHHHh
Q 001144 747 CTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVL 826 (1141)
Q Consensus 747 ll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~h~~~Vv~~~LL 826 (1141)
++.-|.+.+...-..|+..|..+-+....+..-.+.++++..|...|..-.++.+|..+.+++..|+... +... .+.
T Consensus 155 Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~--~~~~-~i~ 231 (780)
T 2z6g_A 155 LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR--EGLL-AIF 231 (780)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH--HHHH-HHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc--hhHH-HHH
Confidence 3333345545444666666666665432221001124678888888877678899999999999888762 2121 222
Q ss_pred hhhcccccccccccccCCCChhhHHHHhhcCcchHHHHHHHHHHHHccCCCccCCCCCCCCCCCCCCcccchhhHHHHHH
Q 001144 827 ATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAIL 906 (1141)
Q Consensus 827 ~~~~~~~~~~d~~~~~~plP~d~~W~aLa~~~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~plaAt~ 906 (1141)
.. -++..|+..|+... .-.-..|..
T Consensus 232 -----------------------------~~-----g~I~~Lv~lL~~~~---------------------~~v~~~A~~ 256 (780)
T 2z6g_A 232 -----------------------------KS-----GGIPALVNMLGSPV---------------------DSVLFHAIT 256 (780)
T ss_dssp -----------------------------HT-----THHHHHHHHTTCSC---------------------HHHHHHHHH
T ss_pred -----------------------------Hc-----CCHHHHHHHHcCCC---------------------HHHHHHHHH
Confidence 00 12444555544210 001346777
Q ss_pred HHHHHHhcCCcchHHHHH--HhhhHHHHHHHHHHhhhccCCCCCCCCh--hHHHHHHHHHHHHhhCChhHHHHHHhcCCC
Q 001144 907 ALTAFFRGGGKVGKKAVE--KSYAPVLAALTLQLGSCHGLASSGQHEP--LRAILTSFQAFCECVGDLEMRKILARDGEQ 982 (1141)
Q Consensus 907 aL~Ell~~~~~~~~~av~--~~fp~Lf~aLL~ql~~~~~~~~~~~~~P--~~~aleAlk~lL~~~g~~~~~~~le~~g~W 982 (1141)
+|+.+-...+ +.+.++. ..+|.|+-.| .. .++ ...+..++..+. .++.+....+-..|+-
T Consensus 257 aL~nLa~~~~-~~~~~v~~~g~v~~Lv~lL----~~---------~~~~v~~~a~~aL~~La--~~~~e~~~~i~~~~~i 320 (780)
T 2z6g_A 257 TLHNLLLHQE-GAKMAVRLAGGLQKMVALL----NK---------TNVKFLAITTDCLQILA--YGNQESKLIILASGGP 320 (780)
T ss_dssp HHHHHHHHST-THHHHHHHTTHHHHHHHGG----GC---------CCHHHHHHHHHHHHHHH--TTCHHHHHHHHTTTHH
T ss_pred HHHHHhCCCh-hhHHHHHHcCCHHHHHHHH----hc---------CCHHHHHHHHHHHHHHh--cCChHHHHHHHHcCCH
Confidence 7777776632 4444443 3344333221 11 122 234556666433 2332222222211110
Q ss_pred C---------chhhhHhhHHHHHHHHhhcCChhHH------HHHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchH
Q 001144 983 N---------DKEKWINLIGDVAGCVSIKRPKEVQ------TICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLL 1047 (1141)
Q Consensus 983 ~---------~~~~~~~GV~lLAram~~~~~~~~~------~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~ 1047 (1141)
. +.+.-.+....+.+.++.. ...+ +++..|...+++....-+..|+.++..+...... ....
T Consensus 321 ~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~--~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~-~~~~ 397 (780)
T 2z6g_A 321 QALVNIMRTYTYEKLLWTTSRVLKVLSVC--SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK-QEGM 397 (780)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHTS--TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT-CSCC
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhcC--hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchh-hhhh
Confidence 0 1111111122223333422 2222 3457788888877766677778888888776542 1223
Q ss_pred HHHHHHHhhhcCCCCchhhhhhccccCCccchh--h--hhhHHHHHHHHHhhccCC-C-hhHHHHHHHHHHHHhc
Q 001144 1048 EQMVEALCRHVSDESPTVRGLCLRGLVQIPSIH--I--HQYATQVLSVILALLDDL-D-ESVQLTAVSCLLTILK 1116 (1141)
Q Consensus 1048 ~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~k--v--~~~~~~lL~all~~l~d~-~-~~vvleam~~L~~lL~ 1116 (1141)
+.++..|.+-+.++++.||..+...|+|++.+. . .......++.++..+.+. + +.+...|+.+|++|-.
T Consensus 398 ~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 398 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472 (780)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 557888888889999999999999999997751 1 111124566777776552 2 3788899999998854
No 34
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=94.28 E-value=3.6 Score=48.79 Aligned_cols=354 Identities=10% Similarity=0.069 Sum_probs=193.2
Q ss_pred hhhhhhcccccchhHHHHHHHhhhcCCC-chhhhc-chHHHHHHHHHhhhhc-cHHHHHHHHHHHHHHhhcc-----ccc
Q 001144 2 FLLNKCRLKEEHLSVGALYVLKHLLPRS-SEAWHS-KRPLLLEAVKSLLDEQ-NLAVQKAISELIVVMASHC-----YLI 73 (1141)
Q Consensus 2 Fll~~l~~~~E~~Rvg~L~vlrhlins~-~~~~~~-k~~~i~~~vk~~l~d~-~~kVr~al~~~I~ama~~~-----yl~ 73 (1141)
+|...|.++++..|..++..|+.+++.. .+.+.. -..-++..+-.+|.+. +..||...+..+..++.+. .+-
T Consensus 91 ~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~ 170 (530)
T 1wa5_B 91 QMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVV 170 (530)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4567788889999999999999998753 222211 1123444555566665 8899999999998888743 111
Q ss_pred CcccccceeeeeccccccCccccccccccccCCCCCchHHHHHHHHHHHHHhccchhhh-----HhhHHHHHhhcccccc
Q 001144 74 GPSGELFVEYLVRHCALSDQKKYVNESSKVKIGAFCPTELRAICEKGLLLLTITIPEMQ-----HILWPLLLKMIIPRAY 148 (1141)
Q Consensus 74 ~~~g~~~i~fiv~q~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~~~L~ll~ttv~~m~-----~vLWP~LL~~i~p~~y 148 (1141)
..| .+..+++...- +...+|..+..+|.-++..-+... .-.-|.|+..+-. ..
T Consensus 171 ~~g---~i~~Lv~lL~~------------------~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~ 228 (530)
T 1wa5_B 171 DAD---AVPLFIQLLYT------------------GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NK 228 (530)
T ss_dssp HTT---CHHHHHHHHHH------------------CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CC
T ss_pred HCC---CHHHHHHHHcC------------------CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CC
Confidence 122 23444432210 134788888888888876533322 2357888888765 44
Q ss_pred cchhhhHHHHHHHHHhhhcCCCCCccccccCCCCCCCHHHHHHHHHHHhcCcccchhhHHHHHHHHHhhCCCCCcchhhh
Q 001144 149 TSAAATVCRCISELCRHRSSSSNVMLSECKARDDIPNPEELFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLF 228 (1141)
Q Consensus 149 T~al~~ick~l~~La~k~~~~~~~~~i~~~~~~~lPsp~~llaRllvl~~~P~~~~~~g~~~L~lL~~l~~~ih~~l~~~ 228 (1141)
.......+.+|.+|+....... ...+ -..++-.|+-++.++. ..--..+++.|.++...-......+
T Consensus 229 ~~v~~~a~~~L~~L~~~~~~~~-~~~~----------~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~L~~~~~~~~~~~ 295 (530)
T 1wa5_B 229 PSLIRTATWTLSNLCRGKKPQP-DWSV----------VSQALPTLAKLIYSMD--TETLVDACWAISYLSDGPQEAIQAV 295 (530)
T ss_dssp HHHHHHHHHHHHHHHCCSSSCC-CHHH----------HGGGHHHHHHHTTCCC--HHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCC-cHHH----------HHhHHHHHHHHHcCCC--HHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4566678888888875321110 0000 1123334444555543 3344566777777765422222222
Q ss_pred HH-HhhhhhhhcccccccCCCCcchHhhHHHHHHHHHHHhhhhhccchHHHHHHHHHHhhhccCCCChhhHHHHHHHHHH
Q 001144 229 WQ-DEIPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAESLDVVQETDWLISLGNAFTEQYVLYTPDDDHSALLHRCLGI 307 (1141)
Q Consensus 229 W~-~~IP~Ll~~L~~~~~~~~~~~~q~~We~~Ll~fL~~sl~~i~d~~W~~~L~~el~~ql~~y~~~~~eK~fL~k~lG~ 307 (1141)
.+ .-+|.|++.|... + |+-+ .-.-.+|..+.. . .+.....++
T Consensus 296 ~~~~~v~~Lv~lL~~~------~-----~~v~--~~a~~~L~~l~~-----------------~--~~~~~~~~~----- 338 (530)
T 1wa5_B 296 IDVRIPKRLVELLSHE------S-----TLVQ--TPALRAVGNIVT-----------------G--NDLQTQVVI----- 338 (530)
T ss_dssp HHTTCHHHHHHGGGCS------C-----HHHH--HHHHHHHHHHTT-----------------S--CHHHHHHHH-----
T ss_pred HhcCcHHHHHHHHCCC------C-----hhhH--HHHHHHHHHHHc-----------------C--CHHHHHHHH-----
Confidence 22 4567777777532 1 2111 000111111110 0 111101000
Q ss_pred HHhhcCChhHHHHHHHHHHHhcccCCccchhhHHHHHHHHhhcCHHHHHHHHHHHHhhhccccchhhhccccCcccccch
Q 001144 308 LLQKVADRNYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEES 387 (1141)
Q Consensus 308 ~L~~~~~~~~V~~~L~~ll~~~~~~~~~ereG~A~~~G~~A~~Hld~vL~~Le~~~k~~~~~~~~~~~~~~k~~~~~~e~ 387 (1141)
+...+. .|..++. +.++.-|+..+.++|-.+.+.-+.. +.+.+. ..+......+++. .
T Consensus 339 ------~~~~l~-~L~~lL~---~~~~~vr~~A~~aL~~l~~~~~~~~----~~~~~~---~~l~~L~~lL~~~-----~ 396 (530)
T 1wa5_B 339 ------NAGVLP-ALRLLLS---SPKENIKKEACWTISNITAGNTEQI----QAVIDA---NLIPPLVKLLEVA-----E 396 (530)
T ss_dssp ------HTTHHH-HHHHHTT---CSCHHHHHHHHHHHHHHTTSCHHHH----HHHHHT---TCHHHHHHHHHHS-----C
T ss_pred ------HcchHH-HHHHHHc---CCCHHHHHHHHHHHHHHHcCCHHHH----HHHHHC---CCHHHHHHHHhcC-----C
Confidence 011111 3333333 3456677888899999887654322 222221 1222333333322 2
Q ss_pred HhHHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHh
Q 001144 388 DDIHAALALMYGYAAKYAPS--TVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVI 450 (1141)
Q Consensus 388 ~~~ks~l~l~YG~va~~ap~--~~l~~rve~~I~~~i~~~~~~~kd~~lK~s~l~si~~i~~al~ 450 (1141)
..++....-+.|.++..+.+ +....-++..++..+.. ++...++.++...+.++..+...-.
T Consensus 397 ~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~-ll~~~~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 397 YKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCD-LLEIADNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHH-HTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHH-HHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 36788888889999988765 55545556556654444 3356788899999999988887643
No 35
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=94.16 E-value=0.077 Score=57.51 Aligned_cols=109 Identities=16% Similarity=0.128 Sum_probs=86.4
Q ss_pred HHhhhcCCcccchhHHHHHHHH-hhh-ccC-C--ccchHHHHHHHHhhhc-CCCCchhhhhhccccCCccch----hhh-
Q 001144 1014 LTKSINRQQRFQREAAAAALSE-FVR-YSG-G--FDSLLEQMVEALCRHV-SDESPTVRGLCLRGLVQIPSI----HIH- 1082 (1141)
Q Consensus 1014 L~~~L~s~~~~qRi~a~af~sE-LL~-~~~-~--~~~l~~~~l~~L~~~l-~D~~~~VR~lslrGLgnl~~~----kv~- 1082 (1141)
+...++|..=.+|..|..-+.. ++. ++. . .... ..++..|.+++ +|+|+.||..+++.+|.++.+ .+.
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~-~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNY-SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 3456677777888888877888 884 343 1 2222 45888999999 899999999999999998764 455
Q ss_pred hhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCCCCc
Q 001144 1083 QYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAV 1123 (1141)
Q Consensus 1083 ~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~l~~~~~ 1123 (1141)
.|...+++++++.+.|+...|.-.+..+|..+...+++...
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~ 140 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLAS 140 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccccc
Confidence 89999999999999998888888888888889888865433
No 36
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=93.86 E-value=5.4 Score=48.72 Aligned_cols=149 Identities=11% Similarity=0.071 Sum_probs=79.8
Q ss_pred hhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCChhhhhhhhcchhHHHHHhhcCCCCCChhHHH
Q 001144 646 CLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFN 725 (1141)
Q Consensus 646 ~lG~lvg~l~p~C~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~ 725 (1141)
.+..++.++ .|+++.+|..|..++..+- . .. . ........-..+..++..++. +++.++-.
T Consensus 15 ~i~~Lv~lL----~~~~~~vr~~A~~~L~~La---~----~~-~----~~~~i~~~~~~i~~Lv~~L~~---~~~~~~~~ 75 (644)
T 2z6h_A 15 AIPELTKLL----NDEDQVVVNKAAVMVHQLS---K----KE-A----SRHAIMRSPQMVSAIVRTMQN---TNDVETAR 75 (644)
T ss_dssp THHHHHHHH----TCSCHHHHHHHHHHHHHHH---T----ST-T----HHHHHTTCHHHHHHHHHHHHS---CCCHHHHH
T ss_pred hHHHHHHHH----cCCCHHHHHHHHHHHHHHH---C----CC-h----hHHHHHhccChHHHHHHHHhc---CCCHHHHH
Confidence 455566654 4889999999999998774 2 00 0 001000000112334444333 22344444
Q ss_pred HHHHHHHhhCChHHHH------HHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhH--hHHHHHHHHHhhhcC
Q 001144 726 RIVSSVCILLTKDELV------ATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDV--SRTTQSLLSAAVHIT 797 (1141)
Q Consensus 726 ~i~~~~~k~L~~~el~------~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV--~eIv~~i~~~L~~i~ 797 (1141)
..+..+...-...+.. ..+-.+++-|.+.+......|+..|..+.......- .. | ..++..+..-|.+-
T Consensus 76 ~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~-~~-v~~~g~i~~Lv~lL~~~- 152 (644)
T 2z6h_A 76 CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK-MA-VRLAGGLQKMVALLNKT- 152 (644)
T ss_dssp HHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH-HH-HHHTTHHHHHHHGGGCC-
T ss_pred HHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH-HH-HHHCCChHHHHHHHCcC-
Confidence 4455554322222221 234456666777766556777777777765431111 11 2 35566666666654
Q ss_pred cHHHHHHHHHHHHHhhhcc
Q 001144 798 DKHLRLETLGAISCLAENT 816 (1141)
Q Consensus 798 ~~~~r~~~l~ai~lLa~~h 816 (1141)
++..+..+..++..|+..+
T Consensus 153 ~~~~~~~a~~~L~~La~~~ 171 (644)
T 2z6h_A 153 NVKFLAITTDCLQILAYGN 171 (644)
T ss_dssp CHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHhcC
Confidence 4577888888888888644
No 37
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=93.77 E-value=0.17 Score=53.58 Aligned_cols=107 Identities=19% Similarity=0.170 Sum_probs=83.2
Q ss_pred HHHHHHhhhcCCcccchhHHHHHHHHhhhccCCc-cchHHH-HHHHHhhhcCCCCchhhhhhccccCCccch--h-h-hh
Q 001144 1010 ICLILTKSINRQQRFQREAAAAALSEFVRYSGGF-DSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPSI--H-I-HQ 1083 (1141)
Q Consensus 1010 i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~-~~l~~~-~l~~L~~~l~D~~~~VR~lslrGLgnl~~~--k-v-~~ 1083 (1141)
.+..+...++++...-|..|+..+..+-..+... ..+.+. .+..|.+.+.++++.||..++..|+|++.+ . . ..
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 176 (252)
T 4db8_A 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 176 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 5677888888887777888888888887665522 223333 788889999999999999999999999875 1 1 11
Q ss_pred hHHHHHHHHHhhccCCChhHHHHHHHHHHHHhc
Q 001144 1084 YATQVLSVILALLDDLDESVQLTAVSCLLTILK 1116 (1141)
Q Consensus 1084 ~~~~lL~all~~l~d~~~~vvleam~~L~~lL~ 1116 (1141)
....+++.++..+.+.+..+...|+.+|+++..
T Consensus 177 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 177 IDAGALPALVQLLSSPNEQILQEALWALSNIAS 209 (252)
T ss_dssp HHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc
Confidence 224568899999999888999999999999874
No 38
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=93.77 E-value=0.63 Score=55.69 Aligned_cols=111 Identities=15% Similarity=0.152 Sum_probs=81.3
Q ss_pred hHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccC-CccchHHH-HHHHHhhhcCCCCchhhhhhccccCCccch----
Q 001144 1006 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSG-GFDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPSI---- 1079 (1141)
Q Consensus 1006 ~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~-~~~~l~~~-~l~~L~~~l~D~~~~VR~lslrGLgnl~~~---- 1079 (1141)
.+.+++..|...++++.+.-+.-|...++.+...+. ....+.+. ++..|.+.+.++++.|+.-+++.|||++.+
T Consensus 248 ~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~ 327 (529)
T 3tpo_A 248 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ 327 (529)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHH
Confidence 346778888888988888777777777888776654 11112222 556677778899999999999999999875
Q ss_pred hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhc
Q 001144 1080 HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILK 1116 (1141)
Q Consensus 1080 kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~ 1116 (1141)
.........++.+...+.+.++.+..+|..+|++|..
T Consensus 328 ~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~ 364 (529)
T 3tpo_A 328 TQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA 364 (529)
T ss_dssp HHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 1111223456777788888888999999999999875
No 39
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=93.63 E-value=2.4 Score=51.80 Aligned_cols=321 Identities=12% Similarity=0.048 Sum_probs=162.8
Q ss_pred HhccCCCchhHHHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhccc-------chhh
Q 001144 749 TAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTN-------SKIV 821 (1141)
Q Consensus 749 ~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~h~-------~~Vv 821 (1141)
.-|.+.+...-..|+..|..+-+....+..-.+.+.++..+...|..-.++.++..+..++..|+.+.. ..++
T Consensus 21 ~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i 100 (644)
T 2z6h_A 21 KLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGI 100 (644)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCH
Confidence 333455555556677777666654322110000235677777777766678899999999998886532 1223
Q ss_pred HHHHhhhhcccccccccccccCCCChhh------HHHHhhcCcchH-----HHHHHHHHHHHccCCCccCCCCCCCCCCC
Q 001144 822 FNEVLATAGKDIVTKDISRLRGGWPMQD------AFHAFSQHAVLS-----FLFLEHLISALNQTPFVKGDMEKGDYSSH 890 (1141)
Q Consensus 822 ~~~LL~~~~~~~~~~d~~~~~~plP~d~------~W~aLa~~~~l~-----~~vL~~LL~~L~~~p~~~e~~~~~~~~~~ 890 (1141)
. .|+.- . ..+-|--+ ++.....++... .-++..|+..|+...
T Consensus 101 ~-~Lv~l-L-----------~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-------------- 153 (644)
T 2z6h_A 101 P-ALVKM-L-----------GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-------------- 153 (644)
T ss_dssp H-HHHHH-T-----------TCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC--------------
T ss_pred H-HHHHH-H-----------hCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCC--------------
Confidence 2 33311 0 11111111 222222221111 223455555554210
Q ss_pred CCCcccchhhHHHHHHHHHHHHhcCCcchHHHHHHh-hhHHHHHHHHHHhhhccCCCCCCCChhHHHHHHHHHHHHhhCC
Q 001144 891 SADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKS-YAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGD 969 (1141)
Q Consensus 891 ~~~~~~~~~~plaAt~aL~Ell~~~~~~~~~av~~~-fp~Lf~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~lL~~~g~ 969 (1141)
.+ .--+|+.+|..+-... ++.+.++... -...|+.++ .. +. .-.-...+..+++.+. .+
T Consensus 154 ---~~----~~~~a~~~L~~La~~~-~~~~~~i~~~g~v~~Lv~lL---~~-----~~-~~~~~~~a~~~L~nLs---~~ 213 (644)
T 2z6h_A 154 ---VK----FLAITTDCLQILAYGN-QESKLIILASGGPQALVNIM---RT-----YT-YEKLLWTTSRVLKVLS---VC 213 (644)
T ss_dssp ---HH----HHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHH---TT-----CC-CHHHHHHHHHHHHHHT---TC
T ss_pred ---HH----HHHHHHHHHHHHHhcC-cHHHHHHHHcCChHHHHHHH---Hc-----CC-hHHHHHHHHHHHHHHh---cC
Confidence 00 1234555676655432 1444444322 122222222 11 00 0000123444444433 33
Q ss_pred hhHHHHHHhcCCCC--------chhhhHhhHHHHHHHHhhcCC--hhHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhc
Q 001144 970 LEMRKILARDGEQN--------DKEKWINLIGDVAGCVSIKRP--KEVQTICLILTKSINRQQRFQREAAAAALSEFVRY 1039 (1141)
Q Consensus 970 ~~~~~~le~~g~W~--------~~~~~~~GV~lLAram~~~~~--~~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~ 1039 (1141)
.+....+-..|++. ......+.+.-.-+.++.... ..+.+++..|+..+++....-|..|+..+..|-..
T Consensus 214 ~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 214 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 33444444444433 112233333333334444322 23567888888888888777777788888887664
Q ss_pred cC-CccchHHH-HHHHHhhhcCCC--CchhhhhhccccCCccch--h---hh--hhHHHHHHHHHhhccCCC-hhHHHHH
Q 001144 1040 SG-GFDSLLEQ-MVEALCRHVSDE--SPTVRGLCLRGLVQIPSI--H---IH--QYATQVLSVILALLDDLD-ESVQLTA 1107 (1141)
Q Consensus 1040 ~~-~~~~l~~~-~l~~L~~~l~D~--~~~VR~lslrGLgnl~~~--k---v~--~~~~~lL~all~~l~d~~-~~vvlea 1107 (1141)
+. ....+.+. .+..|.+.+.++ .+.||.-+++.|+|++.+ . .+ ......++.++..|.+.+ ..+..+|
T Consensus 294 ~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a 373 (644)
T 2z6h_A 294 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 373 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHH
Confidence 32 11122222 455555555542 279999999999999753 1 11 112346888888888765 5899999
Q ss_pred HHHHHHHhc
Q 001144 1108 VSCLLTILK 1116 (1141)
Q Consensus 1108 m~~L~~lL~ 1116 (1141)
...|+++..
T Consensus 374 ~~~L~nLa~ 382 (644)
T 2z6h_A 374 VGLIRNLAL 382 (644)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcc
Confidence 999998764
No 40
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=93.55 E-value=20 Score=44.85 Aligned_cols=70 Identities=11% Similarity=0.119 Sum_probs=47.3
Q ss_pred HHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhccc
Q 001144 744 LHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTN 817 (1141)
Q Consensus 744 i~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~h~ 817 (1141)
+-.+++-+.+.+......|+..|..+...... . +. +..++..+..-+.. .++.+|..+..++..|+.+.+
T Consensus 362 l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~-~-~~-~~~~i~~Lv~lL~~-~d~~vr~~A~~aL~~L~~~~~ 431 (780)
T 2z6g_A 362 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATK-Q-EG-MEGLLGTLVQLLGS-DDINVVTCAAGILSNLTCNNY 431 (780)
T ss_dssp HHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT-C-SC-CHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhccchh-h-hh-hhhHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCH
Confidence 44566666666555556666677766654322 2 33 56677777777664 678899999999999988754
No 41
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=93.23 E-value=5.2 Score=46.91 Aligned_cols=108 Identities=8% Similarity=0.009 Sum_probs=74.7
Q ss_pred HHHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccchh--h--hhh
Q 001144 1009 TICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIH--I--HQY 1084 (1141)
Q Consensus 1009 ~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~k--v--~~~ 1084 (1141)
+.+..+.+.++++...-+..++..+..+-...... ......+..|.+.+.++++.||..+...|+|+..+. . ...
T Consensus 227 g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 305 (529)
T 1jdh_A 227 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 305 (529)
T ss_dssp THHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC-SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh-HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 45667778887776555666777777776665422 223557888888899999999999999999997741 1 111
Q ss_pred HHHHHHHHHhhccCC--ChhHHHHHHHHHHHHhcc
Q 001144 1085 ATQVLSVILALLDDL--DESVQLTAVSCLLTILKS 1117 (1141)
Q Consensus 1085 ~~~lL~all~~l~d~--~~~vvleam~~L~~lL~~ 1117 (1141)
....++.++..+.+. ++.+...|+..|+++...
T Consensus 306 ~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 306 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp HTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred HcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence 223566677766542 358888999999988543
No 42
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=93.23 E-value=0.15 Score=54.08 Aligned_cols=108 Identities=18% Similarity=0.162 Sum_probs=80.1
Q ss_pred HHHHHHhhhcCCcccchhHHHHHHHHhhhc-cCCccchHHH-HHHHHhhhcCCCCchhhhhhccccCCccch---h-hhh
Q 001144 1010 ICLILTKSINRQQRFQREAAAAALSEFVRY-SGGFDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPSI---H-IHQ 1083 (1141)
Q Consensus 1010 i~~~L~~~L~s~~~~qRi~a~af~sELL~~-~~~~~~l~~~-~l~~L~~~l~D~~~~VR~lslrGLgnl~~~---k-v~~ 1083 (1141)
++..++..|+++...-|..|+..+..+... +.....+.+. .+..|.+-++++++.||..++..|+|++.+ + ...
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 134 (252)
T 4db8_A 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHH
Confidence 455666777777666677777777777653 2222223333 777888889999999999999999999876 2 223
Q ss_pred hHHHHHHHHHhhccCCChhHHHHHHHHHHHHhcc
Q 001144 1084 YATQVLSVILALLDDLDESVQLTAVSCLLTILKS 1117 (1141)
Q Consensus 1084 ~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~ 1117 (1141)
.....++.++..+.+.+..+...|..+|+++...
T Consensus 135 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 3345789999999998889999999999998753
No 43
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=92.83 E-value=0.45 Score=48.83 Aligned_cols=106 Identities=17% Similarity=0.124 Sum_probs=78.9
Q ss_pred HHHHHHhhhcCCcccchhHHHHHHHHhhhccC-CccchHHH-HHHHHhhhcCCCCchhhhhhccccCCccch----hhhh
Q 001144 1010 ICLILTKSINRQQRFQREAAAAALSEFVRYSG-GFDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPSI----HIHQ 1083 (1141)
Q Consensus 1010 i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~-~~~~l~~~-~l~~L~~~l~D~~~~VR~lslrGLgnl~~~----kv~~ 1083 (1141)
.+..++..|+++...-|..|+..+..+..... ....+.+. .+..|.+-+.++++.||..++..|+|+..+ +...
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 176 (210)
T 4db6_A 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAV 176 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 45677888888877777778878888775433 11122233 777888888999999999999999999765 1122
Q ss_pred hHHHHHHHHHhhccCCChhHHHHHHHHHHHHh
Q 001144 1084 YATQVLSVILALLDDLDESVQLTAVSCLLTIL 1115 (1141)
Q Consensus 1084 ~~~~lL~all~~l~d~~~~vvleam~~L~~lL 1115 (1141)
.....++.+...+.+.+..+...|...|+++-
T Consensus 177 ~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 177 KEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 23356888999999888999999999998874
No 44
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=92.71 E-value=0.09 Score=54.21 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=80.8
Q ss_pred HHHHHHHHhhhcCCcccchhHHHHHHHHhhhccC-CccchHHH-HHHHHhhhcCCCCchhhhhhccccCCccch--h--h
Q 001144 1008 QTICLILTKSINRQQRFQREAAAAALSEFVRYSG-GFDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPSI--H--I 1081 (1141)
Q Consensus 1008 ~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~-~~~~l~~~-~l~~L~~~l~D~~~~VR~lslrGLgnl~~~--k--v 1081 (1141)
......+.+++++++..-|..|+..+..+-.... ....+.+. .+..|.+-+.++++.||..+++.|+|++.+ . .
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 3445567778888888888888888888874433 22222332 677888888999999999999999999864 1 1
Q ss_pred hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhc
Q 001144 1082 HQYATQVLSVILALLDDLDESVQLTAVSCLLTILK 1116 (1141)
Q Consensus 1082 ~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~ 1116 (1141)
.......++.++..+.+.+..+...|..+|+++..
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 125 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 125 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHc
Confidence 22224468899999999999999999999999875
No 45
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=92.68 E-value=27 Score=43.91 Aligned_cols=109 Identities=15% Similarity=0.180 Sum_probs=76.1
Q ss_pred HHHHHHHhhhcCCcccchhHHHHHHHHhhh-ccCCccchHH--HHHHHHhhhcCCCCchhhhhhccccCCccch--hh--
Q 001144 1009 TICLILTKSINRQQRFQREAAAAALSEFVR-YSGGFDSLLE--QMVEALCRHVSDESPTVRGLCLRGLVQIPSI--HI-- 1081 (1141)
Q Consensus 1009 ~i~~~L~~~L~s~~~~qRi~a~af~sELL~-~~~~~~~l~~--~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~--kv-- 1081 (1141)
+.+..|++++.+....-|..|+..++-+-. ++...+.+.+ ..+..|.+-+.+++..+|.-++.+++|+..+ +.
T Consensus 665 g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~ 744 (810)
T 3now_A 665 DRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAK 744 (810)
T ss_dssp SHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 356788888988877777777777777766 3322222333 2555666667789999999999999999765 11
Q ss_pred hhhHHHHHHHHHhhccCC---ChhHHHHHHHHHHHHhcc
Q 001144 1082 HQYATQVLSVILALLDDL---DESVQLTAVSCLLTILKS 1117 (1141)
Q Consensus 1082 ~~~~~~lL~all~~l~d~---~~~vvleam~~L~~lL~~ 1117 (1141)
......+++.+...+.+. +.+++.-|+.+|..++..
T Consensus 745 ~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 745 KLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp HHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 112234677888877544 568888899999998863
No 46
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=92.60 E-value=0.24 Score=52.07 Aligned_cols=108 Identities=21% Similarity=0.220 Sum_probs=82.5
Q ss_pred HHHHHHHhhhcCCcccchhHHHHHHHHhhhc-cCCccchHHH-HHHHHhhhcCCCCchhhhhhccccCCccch-h---hh
Q 001144 1009 TICLILTKSINRQQRFQREAAAAALSEFVRY-SGGFDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPSI-H---IH 1082 (1141)
Q Consensus 1009 ~i~~~L~~~L~s~~~~qRi~a~af~sELL~~-~~~~~~l~~~-~l~~L~~~l~D~~~~VR~lslrGLgnl~~~-k---v~ 1082 (1141)
+.+..+...++++...-|..|+..+..+... +.....+.+. .+..|.+-+.++++.||..+++.|+|++.+ . -.
T Consensus 86 ~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 165 (252)
T 4hxt_A 86 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 165 (252)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3567788888888777788888888888743 3322222332 777888889999999999999999999875 1 12
Q ss_pred hhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhc
Q 001144 1083 QYATQVLSVILALLDDLDESVQLTAVSCLLTILK 1116 (1141)
Q Consensus 1083 ~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~ 1116 (1141)
.....+++.++..+.+.++.+...|+.+|+++..
T Consensus 166 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 166 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 2234578999999998889999999999999875
No 47
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=91.89 E-value=1.4 Score=52.51 Aligned_cols=111 Identities=15% Similarity=0.152 Sum_probs=79.8
Q ss_pred hHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccC-CccchHHH-HHHHHhhhcCCCCchhhhhhccccCCccchh---
Q 001144 1006 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSG-GFDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPSIH--- 1080 (1141)
Q Consensus 1006 ~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~-~~~~l~~~-~l~~L~~~l~D~~~~VR~lslrGLgnl~~~k--- 1080 (1141)
.+.+++..|...++++.+.-+..|+..++.+...+. ....+.+. ++..|.+-+.++++.|+.-+++.|||+..+.
T Consensus 229 ~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~ 308 (510)
T 3ul1_B 229 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ 308 (510)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHH
Confidence 356788888888988888777778888888876654 11112222 5566777788999999999999999997651
Q ss_pred -hhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhc
Q 001144 1081 -IHQYATQVLSVILALLDDLDESVQLTAVSCLLTILK 1116 (1141)
Q Consensus 1081 -v~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~ 1116 (1141)
.......+++.+...+.+.++.+..+|..+|++|..
T Consensus 309 ~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a 345 (510)
T 3ul1_B 309 TQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA 345 (510)
T ss_dssp HHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 111223456667777777888999999999999865
No 48
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=90.75 E-value=44 Score=42.43 Aligned_cols=136 Identities=11% Similarity=0.104 Sum_probs=86.9
Q ss_pred HHHHHhhcCC-hhHHHHHHHHHhhh----cCCcccchhHHHHHHHHhhhccC-CccchHHHHHHHHhhhcCCCCchhhhh
Q 001144 995 VAGCVSIKRP-KEVQTICLILTKSI----NRQQRFQREAAAAALSEFVRYSG-GFDSLLEQMVEALCRHVSDESPTVRGL 1068 (1141)
Q Consensus 995 LAram~~~~~-~~~~~i~~~L~~~L----~s~~~~qRi~a~af~sELL~~~~-~~~~l~~~~l~~L~~~l~D~~~~VR~l 1068 (1141)
+-+.++...+ ..++.++..+...+ ++..-.+|-++.-.+.-+..... .....+..++..|. .+.++++.||.-
T Consensus 430 ~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~~~~~~vr~~ 508 (963)
T 2x19_B 430 TLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RISISNVQLADT 508 (963)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSCCCSHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hCCCCcHHHHHH
Confidence 3344443333 33455666666666 33222344444433333333332 23345666777554 566678999999
Q ss_pred hccccCCccch--hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCCCCccchHHHHHHHh
Q 001144 1069 CLRGLVQIPSI--HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRL 1134 (1141)
Q Consensus 1069 slrGLgnl~~~--kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~l~~~~~~~~l~~ia~rl 1134 (1141)
++.-+|..+.. .-.++.+.+++.++.+|.+ ..|...|...+.++..... ..+.|++-.|-.++
T Consensus 509 ~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~-~~l~p~~~~il~~l 573 (963)
T 2x19_B 509 VMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECK-YDLPPYAANIVAVS 573 (963)
T ss_dssp HHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTG-GGCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHH
Confidence 99999988654 2236788999999999965 6888899999999997765 34667776665554
No 49
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=90.36 E-value=14 Score=47.98 Aligned_cols=198 Identities=14% Similarity=0.153 Sum_probs=110.3
Q ss_pred chHHHHHHhhhHHHHHHHHHHhhhccCC----CCC-----CC-C----h-hHHHHHHHHHHHHhhCChhHHHHH----Hh
Q 001144 918 VGKKAVEKSYAPVLAALTLQLGSCHGLA----SSG-----QH-E----P-LRAILTSFQAFCECVGDLEMRKIL----AR 978 (1141)
Q Consensus 918 ~~~~av~~~fp~Lf~aLL~ql~~~~~~~----~~~-----~~-~----P-~~~aleAlk~lL~~~g~~~~~~~l----e~ 978 (1141)
..+.....++++|.-.++.++.|--+.. .++ .. + . .+.+.++|+.+. ..+..++...+ ..
T Consensus 380 ~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~-~~~~~~~l~~v~~~l~~ 458 (1049)
T 3m1i_C 380 LKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLT-HLNVIDTEEIMISKLAR 458 (1049)
T ss_dssp TCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHH
Confidence 4556667788888888877775521110 000 01 1 1 235666666664 33333433332 22
Q ss_pred --c---CCCCchhhhHhhHHHHHHHHhhcC-ChhHHHHHHHHHhhhc--CCcccchhHH------HHHHHHhhhccCCcc
Q 001144 979 --D---GEQNDKEKWINLIGDVAGCVSIKR-PKEVQTICLILTKSIN--RQQRFQREAA------AAALSEFVRYSGGFD 1044 (1141)
Q Consensus 979 --~---g~W~~~~~~~~GV~lLAram~~~~-~~~~~~i~~~L~~~L~--s~~~~qRi~a------~af~sELL~~~~~~~ 1044 (1141)
+ ..|...+.-.-+++-+|.++.... ...++.|+..+..... ++.+.+.+++ ++=|++++... .
T Consensus 459 ~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~---~ 535 (1049)
T 3m1i_C 459 QIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH---W 535 (1049)
T ss_dssp HHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC---H
T ss_pred HhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH---H
Confidence 1 234333433334433333222111 1235666666654322 2222233322 13344555442 2
Q ss_pred chHHHHHHHHhhhcCCCCchhhhhhccccCCccch---hh--------hhhHHHHHHHHHhhccCCChhHHHHHHHHHHH
Q 001144 1045 SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HI--------HQYATQVLSVILALLDDLDESVQLTAVSCLLT 1113 (1141)
Q Consensus 1045 ~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~---kv--------~~~~~~lL~all~~l~d~~~~vvleam~~L~~ 1113 (1141)
..+..+++.|.+++.|+++.||..+-..+.++... ++ ..|.+.++..+...+.+.+.+-....|.+++.
T Consensus 536 ~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ 615 (1049)
T 3m1i_C 536 NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGI 615 (1049)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35677999999999999999999998888887654 22 26678888877777766555555667788888
Q ss_pred HhccCC
Q 001144 1114 ILKSSS 1119 (1141)
Q Consensus 1114 lL~~l~ 1119 (1141)
++...+
T Consensus 616 ii~~~~ 621 (1049)
T 3m1i_C 616 IISEER 621 (1049)
T ss_dssp HHHTCC
T ss_pred HHHcCC
Confidence 887776
No 50
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=90.12 E-value=1.3 Score=50.45 Aligned_cols=127 Identities=16% Similarity=0.191 Sum_probs=86.1
Q ss_pred chhhhHhhHHHHHHHHhhcC-Ch--hHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCC
Q 001144 984 DKEKWINLIGDVAGCVSIKR-PK--EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSD 1060 (1141)
Q Consensus 984 ~~~~~~~GV~lLAram~~~~-~~--~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D 1060 (1141)
++....+.++-+-..|..-. .+ ++..++-.+.+.+++++...|-..-.++.++...+. + .+ -+.|.|.+-++|
T Consensus 40 ~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~-e-~i--Lv~Nsl~kDl~~ 115 (355)
T 3tjz_B 40 NPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAE-D-VI--IVTSSLTKDMTG 115 (355)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSS-C-GG--GGHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHH-H-HH--HHHHHHHhhcCC
Confidence 44455555555555554432 11 356777777888888888888777777777766653 2 11 267788888999
Q ss_pred CCchhhhhhccccCCccchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhcc
Q 001144 1061 ESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKS 1117 (1141)
Q Consensus 1061 ~~~~VR~lslrGLgnl~~~kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~ 1117 (1141)
|||.+|.++||.|+++...++ ...+.+.+..++.|++.-|.-.|..+..+++..
T Consensus 116 ~N~~iR~lALRtL~~I~~~~m---~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~ 169 (355)
T 3tjz_B 116 KEDSYRGPAVRALCQITDSTM---LQAIERYMKQAIVDKVPSVSSSALVSSLHLLKC 169 (355)
T ss_dssp SCHHHHHHHHHHHHHHCCTTT---HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT
T ss_pred CcHhHHHHHHHHHhcCCCHHH---HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999876532 344556666667777777777776666666544
No 51
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=89.52 E-value=42 Score=40.33 Aligned_cols=402 Identities=11% Similarity=0.082 Sum_probs=204.2
Q ss_pred CCCChhhHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhcccCCccchhhHHHHHHHHhhc-CHHHHHHHHHHHHhhhccc
Q 001144 291 YTPDDDHSALLHRCLGILLQKVADRNYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAAS-HLDAVLEMLKGILDNIGQS 369 (1141)
Q Consensus 291 y~~~~~eK~fL~k~lG~~L~~~~~~~~V~~~L~~ll~~~~~~~~~ereG~A~~~G~~A~~-Hld~vL~~Le~~~k~~~~~ 369 (1141)
-.+...+|..-|-+++..... +.+.+.--+..+.+-.++.++..|.....++|-.... ....+...+ .+
T Consensus 59 ~s~~~~~Krl~yl~l~~~~~~--~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l---~~----- 128 (591)
T 2vgl_B 59 QTDNLELKKLVYLYLMNYAKS--QPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPL---RK----- 128 (591)
T ss_dssp SSSCHHHHHHHHHHHHHHHHH--SHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHH---HH-----
T ss_pred CCCCHHHHHHHHHHHHHHccc--CchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHH---HH-----
Confidence 346678899999888876553 3444332334444444556676664444455443321 111211111 11
Q ss_pred cchhhhccccCcccccchHhHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Q 001144 370 LFQRLLSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAV 449 (1141)
Q Consensus 370 ~~~~~~~~~k~~~~~~e~~~~ks~l~l~YG~va~~ap~~~l~~rve~~I~~~i~~~~~~~kd~~lK~s~l~si~~i~~al 449 (1141)
..+++. ..+|.+...|.+.++...|. .+. +..++ +.+..+++.+|+.++.+-+.++..|+..
T Consensus 129 -------~L~d~~-----~~VRk~A~~al~~i~~~~p~-~~~---~~~~~-~~l~~lL~d~d~~V~~~A~~aL~~i~~~- 190 (591)
T 2vgl_B 129 -------CLKDED-----PYVRKTAAVCVAKLHDINAQ-MVE---DQGFL-DSLRDLIADSNPMVVANAVAALSEISES- 190 (591)
T ss_dssp -------HSSCSC-----HHHHHHHHHHHHHHHHSSCC-CHH---HHHHH-HHHHHTTSCSCHHHHHHHHHHHHHHTTS-
T ss_pred -------HcCCCC-----hHHHHHHHHHHHHHHhhChh-hcc---cccHH-HHHHHHhCCCChhHHHHHHHHHHHHHhh-
Confidence 222322 35888888999999987765 331 11122 2455555667888888888888775432
Q ss_pred hhhhhcCCCcCCCCHHHHHHHHHHHhccCCCCCcCCchHHHHHHHHHHHHHhhhhcccCCCCChhHHHHHHHHhhhcccc
Q 001144 450 INAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATLGFFAL 529 (1141)
Q Consensus 450 ~~~~~~~~~f~f~~k~eLl~~l~~~i~~Ep~~~L~s~~~~ll~~r~~a~~ait~L~~L~P~l~~e~~~~ll~~clsv~~l 529 (1141)
....+.+.--...+..++..+... +| . .+..++.+++.+ .|. ++++..++++.++..+.
T Consensus 191 -----~~~~~~~~l~~~~~~~Ll~~l~~~------~~---~--~q~~il~~l~~l---~~~-~~~~~~~~l~~l~~~l~- 249 (591)
T 2vgl_B 191 -----HPNSNLLDLNPQNINKLLTALNEC------TE---W--GQIFILDCLSNY---NPK-DDREAQSICERVTPRLS- 249 (591)
T ss_dssp -----CCSCCSCCCHHHHHHHHHHHHHHC------CH---H--HHHHHHHHHHTS---CCC-SHHHHHHHHHHHTTCSC-
T ss_pred -----CCCccchhccHHHHHHHHHcCCCC------Cc---h--HHHHHHHHHHHh---CCC-ChHHHHHHHHHHHHHHc-
Confidence 111223333445555565555421 23 1 445566655544 443 34455566655443221
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHhhhh---hhcCChhHHHhhHHHHHHHHHHHHHHhcccc
Q 001144 530 PNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQ---YVSSPVEYQRRRSCLAVYEMLLKFRTLCVIG 606 (1141)
Q Consensus 530 P~~~~~~~~~l~~~l~~ll~~ll~~~~~~~~~~~~~Lq~il~~L~p---Wl~S~k~~EReRA~~~~~~lL~~~~~~~~~~ 606 (1141)
+.+..-.+++...+.. +. ...+ .+++.++.+++-+.+ -+.+....-|--|+.....+.+..-+
T Consensus 250 ----~~~~~V~~ea~~~i~~-l~-~~~~---~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~----- 315 (591)
T 2vgl_B 250 ----HANSAVVLSAVKVLMK-FL-ELLP---KDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPE----- 315 (591)
T ss_dssp ----SSTTHHHHHHHHHHHH-SC-CSCC---BTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCS-----
T ss_pred ----CCChHHHHHHHHHHHH-Hh-hccC---CCHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChH-----
Confidence 2222334444332211 11 1010 013445444433332 34466677788888887666552110
Q ss_pred ccccCCCCCcccccchhhccccCCCCCCCccCCCchhhhhhhhHHHHhhcCcc-CCChhHHHHHHHHHHHHHHHHhhCCC
Q 001144 607 YCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCA-DTDSEVRKISAQILDQLFSISLSLPR 685 (1141)
Q Consensus 607 ~c~~~~~~~~~~~~~l~~~~~~~f~~~p~~~~~p~~~~~~lG~lvg~l~p~C~-D~~~~ir~~A~~~i~~Ll~I~l~~~~ 685 (1141)
-|. + .+- .+ .|. |.+..||..|.+.+..+- .
T Consensus 316 ----------------------~~~--------~-----~~~----~~--~~~~~d~~~Ir~~al~~L~~l~-------~ 347 (591)
T 2vgl_B 316 ----------------------ILK--------Q-----EIK----VF--FVKYNDPIYVKLEKLDIMIRLA-------S 347 (591)
T ss_dssp ----------------------TTT--------T-----CTT----TT--SCCTTSCHHHHHHHHHHHHHTC-------C
T ss_pred ----------------------HHH--------H-----HHH----hh--eeccCChHHHHHHHHHHHHHHC-------C
Confidence 010 0 011 11 352 334999999988665331 1
Q ss_pred CCCCCCCCChhhhhhhhcchhHHHHHhhcCCCCCChhHHHHHHH---HHHhhCChHHHHHHHHHHHHhccCCCchhHHHH
Q 001144 686 PVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFNRIVS---SVCILLTKDELVATLHSCTTAICDRTKQSAEGA 762 (1141)
Q Consensus 686 ~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~i~~---~~~k~L~~~el~~li~tll~~L~d~~~~~~~~A 762 (1141)
..+.+...+ ++.+. ....+.+.-..+++ .++.+.++ .....+-++++-+.+........+
T Consensus 348 ------~~nv~~iv~------~L~~~----l~~~d~~~r~~~v~aI~~la~~~~~-~~~~~v~~Ll~ll~~~~~~v~~e~ 410 (591)
T 2vgl_B 348 ------QANIAQVLA------ELKEY----ATEVDVDFVRKAVRAIGRCAIKVEQ-SAERCVSTLLDLIQTKVNYVVQEA 410 (591)
T ss_dssp ------SSTHHHHHH------HHHHH----TTSSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred ------hhhHHHHHH------HHHHH----HhcCCHHHHHHHHHHHHHHHHhChh-HHHHHHHHHHHHHcccchHHHHHH
Confidence 001122222 22221 11223332233333 34555543 234556666666777777777777
Q ss_pred HHHHHHHHHhhccccchhhHhHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhcc--cchhhHHHHh
Q 001144 763 IQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENT--NSKIVFNEVL 826 (1141)
Q Consensus 763 ~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~h--~~~Vv~~~LL 826 (1141)
...+..+++.. +++. ..++..++..+..+.++.++..++.++--.+.+- +.+++. .++
T Consensus 411 i~~l~~ii~~~-p~~~----~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~~~~l~-~l~ 470 (591)
T 2vgl_B 411 IVVIRDIFRKY-PNKY----ESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLE-SFL 470 (591)
T ss_dssp HHHHHHHHHHS-CSSC----CTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTHHHHHH-HHS
T ss_pred HHHHHHHHHHC-cchH----HHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccCHHHHHH-HHH
Confidence 77888887653 3332 3356677788888888999887776666655543 245564 555
No 52
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=89.47 E-value=45 Score=40.55 Aligned_cols=59 Identities=8% Similarity=0.069 Sum_probs=34.9
Q ss_pred hhhcccccchhHHHHHHHhhhcCCCchhhhcchHHHHHHHHHhh--hhccHHHHHHHHHHHHHHhhc
Q 001144 5 NKCRLKEEHLSVGALYVLKHLLPRSSEAWHSKRPLLLEAVKSLL--DEQNLAVQKAISELIVVMASH 69 (1141)
Q Consensus 5 ~~l~~~~E~~Rvg~L~vlrhlins~~~~~~~k~~~i~~~vk~~l--~d~~~kVr~al~~~I~ama~~ 69 (1141)
.-|.++|+-+|.-||..+-.+.+ +.| -+.++..++..+ .|.+.-|||.-+-.+..+...
T Consensus 118 kDl~~~n~~ir~lALr~L~~i~~---~e~---~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~ 178 (621)
T 2vgl_A 118 NDLASRNPTFMGLALHCIANVGS---REM---AEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRT 178 (621)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHCC---HHH---HHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHhhccCC---HHH---HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 34556667777777776666543 222 134555555666 677777777666666665554
No 53
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=88.96 E-value=55 Score=40.85 Aligned_cols=66 Identities=18% Similarity=0.163 Sum_probs=38.1
Q ss_pred HHHHHhhhcCCcccchhHHHHHHHHhhh-ccCCccchH--HHHHHHHhhhcCC--CCchhhhhhccccCCc
Q 001144 1011 CLILTKSINRQQRFQREAAAAALSEFVR-YSGGFDSLL--EQMVEALCRHVSD--ESPTVRGLCLRGLVQI 1076 (1141)
Q Consensus 1011 ~~~L~~~L~s~~~~qRi~a~af~sELL~-~~~~~~~l~--~~~l~~L~~~l~D--~~~~VR~lslrGLgnl 1076 (1141)
+..|+.++++..+..|.+|.++++-+-. ++.....++ ...+..|.+-++| +++.+|.=++-.+.||
T Consensus 656 L~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL 726 (778)
T 3opb_A 656 FNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGL 726 (778)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 7788899999888888888888888743 332111111 1244444444444 5666664443333344
No 54
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=88.93 E-value=60 Score=41.24 Aligned_cols=72 Identities=7% Similarity=0.046 Sum_probs=53.5
Q ss_pred HHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhc-CcHHHHHHHHHHHHHhhhccc
Q 001144 743 TLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHI-TDKHLRLETLGAISCLAENTN 817 (1141)
Q Consensus 743 li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i-~~~~~r~~~l~ai~lLa~~h~ 817 (1141)
++..++.+|.+ ......|+..+..+.+..+..+..- ++.|++.+..-+..- -....+..+++++..++..-+
T Consensus 530 vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~-~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~ 602 (963)
T 2x19_B 530 VLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPY-AANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ 602 (963)
T ss_dssp THHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTT-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC
Confidence 33445566655 4455788888999998888878544 889999988888753 256889999999999987654
No 55
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=88.52 E-value=0.26 Score=47.23 Aligned_cols=53 Identities=26% Similarity=0.224 Sum_probs=25.3
Q ss_pred HHhhhcCCCCchhhhhhccccCCccchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHH
Q 001144 1053 ALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLL 1112 (1141)
Q Consensus 1053 ~L~~~l~D~~~~VR~lslrGLgnl~~~kv~~~~~~lL~all~~l~d~~~~vvleam~~L~ 1112 (1141)
.|.+.+.|+++.||..++++||++.. +..++.+...+.|.|..|...|..+|.
T Consensus 77 ~L~~~L~d~~~~VR~~A~~aL~~~~~-------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 77 PLIKLLEDDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHHCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 33333445555555555555554431 223344444444555555555555544
No 56
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=88.19 E-value=0.63 Score=47.53 Aligned_cols=91 Identities=27% Similarity=0.222 Sum_probs=59.4
Q ss_pred HHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccchhhhhhHHHHH
Q 001144 1010 ICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVL 1089 (1141)
Q Consensus 1010 i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~kv~~~~~~lL 1089 (1141)
.+..+...++++...-|..|+-.+..+ ..+ ..+..|.+.+.|+++.||..++++||++.. +..+
T Consensus 108 ~~~~L~~~l~d~~~~vr~~a~~aL~~~-~~~--------~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-------~~~~ 171 (201)
T 3ltj_A 108 AVEPLIKALKDEDWFVRIAAAFALGEI-GDE--------RAVEPLIKALKDEDGWVRQSAADALGEIGG-------ERVR 171 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHH-TCG--------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------HHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh-CCH--------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------hhHH
Confidence 344455566677666677776666665 211 134456666788888888888888887743 2345
Q ss_pred HHHHhhccCCChhHHHHHHHHHHHHhc
Q 001144 1090 SVILALLDDLDESVQLTAVSCLLTILK 1116 (1141)
Q Consensus 1090 ~all~~l~d~~~~vvleam~~L~~lL~ 1116 (1141)
+.+...+.|.+..|...|..+|.++-.
T Consensus 172 ~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 172 AAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 555666667778888888888877643
No 57
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=87.48 E-value=0.66 Score=47.78 Aligned_cols=99 Identities=23% Similarity=0.224 Sum_probs=70.7
Q ss_pred HHHhhcCChhHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCc
Q 001144 997 GCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQI 1076 (1141)
Q Consensus 997 ram~~~~~~~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl 1076 (1141)
+++.....+ ..+..+...+++++..-|..|+-.+..+= .. ..+..|.+.+.|+++.||..++++||++
T Consensus 72 ~aL~~~~~~---~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-----~~----~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 72 DALGQIGDE---RAVEPLIKALKDEDGWVRQSAAVALGQIG-----DE----RAVEPLIKALKDEDWFVRIAAAFALGEI 139 (211)
T ss_dssp HHHHHHCCG---GGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----CG----GGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHhhCCH---HHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----cH----HHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 444444432 33455566677877777888877777652 11 1345666677899999999999999988
Q ss_pred cchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHH
Q 001144 1077 PSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTI 1114 (1141)
Q Consensus 1077 ~~~kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~l 1114 (1141)
... ..++.+...+.|.+..|...|..+|+.+
T Consensus 140 ~~~-------~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 140 GDE-------RAVEPLIKALKDEDGWVRQSAADALGEI 170 (211)
T ss_dssp CCG-------GGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred CCH-------HHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 532 3466777788888999999999999987
No 58
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=86.65 E-value=0.76 Score=46.91 Aligned_cols=89 Identities=28% Similarity=0.277 Sum_probs=64.1
Q ss_pred HHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccchhhhhhHHHHH
Q 001144 1010 ICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVL 1089 (1141)
Q Consensus 1010 i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~kv~~~~~~lL 1089 (1141)
.+..+...+++++..-|..|+-.+.++ ..+ ..+..|.+.+.|+++.||..++++||++... ..+
T Consensus 46 ~~~~L~~~l~~~~~~vr~~a~~~L~~~-~~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-------~~~ 109 (201)
T 3ltj_A 46 AVEPLIKALKDEDAWVRRAAADALGQI-GDE--------RAVEPLIKALKDEDGWVRQSAAVALGQIGDE-------RAV 109 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHH-CCG--------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-------GGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhh-CCH--------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-------HHH
Confidence 345556666777777777777666664 111 1345666678899999999999999987532 245
Q ss_pred HHHHhhccCCChhHHHHHHHHHHHH
Q 001144 1090 SVILALLDDLDESVQLTAVSCLLTI 1114 (1141)
Q Consensus 1090 ~all~~l~d~~~~vvleam~~L~~l 1114 (1141)
+.+...+.|.+..|...|+.+|+++
T Consensus 110 ~~L~~~l~d~~~~vr~~a~~aL~~~ 134 (201)
T 3ltj_A 110 EPLIKALKDEDWFVRIAAAFALGEI 134 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 6667777888889999999999886
No 59
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=85.34 E-value=0.64 Score=47.88 Aligned_cols=91 Identities=27% Similarity=0.277 Sum_probs=66.4
Q ss_pred HHHHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccchhhhhhHHH
Q 001144 1008 QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQ 1087 (1141)
Q Consensus 1008 ~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~kv~~~~~~ 1087 (1141)
+..+..|...+++++..-|..|+-.+.++-. + ..+..|.+.+.|+++.||..++++||++... .
T Consensus 49 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-~--------~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-------~ 112 (211)
T 3ltm_A 49 ERAVEPLIKALKDEDAWVRRAAADALGQIGD-E--------RAVEPLIKALKDEDGWVRQSAAVALGQIGDE-------R 112 (211)
T ss_dssp GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-G--------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-------G
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-H--------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-------H
Confidence 5667777777777766677777666665421 1 1345566677899999999999999877532 3
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHH
Q 001144 1088 VLSVILALLDDLDESVQLTAVSCLLTI 1114 (1141)
Q Consensus 1088 lL~all~~l~d~~~~vvleam~~L~~l 1114 (1141)
.++.+...+.|.+..|...|+.+|+.+
T Consensus 113 ~~~~L~~~l~d~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 113 AVEPLIKALKDEDWFVRIAAAFALGEI 139 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 456677778888999999999999887
No 60
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=85.32 E-value=0.75 Score=51.10 Aligned_cols=128 Identities=12% Similarity=0.092 Sum_probs=80.1
Q ss_pred hhHhhHHHHHHHHhhcCChhHHHHHHHHHhhhcCCc------------ccchhHHHHHHHHhhhccCCccchHHH-HHHH
Q 001144 987 KWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQ------------RFQREAAAAALSEFVRYSGGFDSLLEQ-MVEA 1053 (1141)
Q Consensus 987 ~~~~GV~lLAram~~~~~~~~~~i~~~L~~~L~s~~------------~~qRi~a~af~sELL~~~~~~~~l~~~-~l~~ 1053 (1141)
.|-.|.-.|..+|-- .+.-...+...+..|+++. ..+|+.|...+.+++...+....+.+. .+..
T Consensus 8 ~~~~~~~~~~~~~~~--~~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~ 85 (296)
T 1xqr_A 8 HHSSGLVPRGSHMRG--QRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHL 85 (296)
T ss_dssp ------------CCS--CHHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHH
T ss_pred ccccchHHHHHHHcC--CCCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHH
Confidence 455677788777652 2444555666666666652 248889999999999876522122222 4555
Q ss_pred Hhh-hcCCCCchhhhhhccccCCccch--hhhhh--HHHHHHHHHhhcc-CCChhHHHHHHHHHHHHhc
Q 001144 1054 LCR-HVSDESPTVRGLCLRGLVQIPSI--HIHQY--ATQVLSVILALLD-DLDESVQLTAVSCLLTILK 1116 (1141)
Q Consensus 1054 L~~-~l~D~~~~VR~lslrGLgnl~~~--kv~~~--~~~lL~all~~l~-d~~~~vvleam~~L~~lL~ 1116 (1141)
|.. -+.++++.||..+.+.|||++.+ +.+.. ....++.++..+. +++..+...|+.+|+++..
T Consensus 86 Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~ 154 (296)
T 1xqr_A 86 LVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR 154 (296)
T ss_dssp HHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc
Confidence 666 78899999999999999999875 22221 2246777777777 3567899999999999875
No 61
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=84.02 E-value=51 Score=35.72 Aligned_cols=181 Identities=9% Similarity=0.055 Sum_probs=116.7
Q ss_pred HHHHHHHHHhhhhhhc----CChhHHHhhHHHHHHHHHHHHHHhccccccccCCCCCcccccchhhccccCCCCCCCccC
Q 001144 563 ADQLLHILRQIDQYVS----SPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYV 638 (1141)
Q Consensus 563 ~~~Lq~il~~L~pWl~----S~k~~EReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~f~~~p~~~~ 638 (1141)
++.+...+..+-+|+. +.+.--=.+++.....++....+. + ..++
T Consensus 78 ~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~---~---------------------y~~~------- 126 (266)
T 2of3_A 78 PRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDT---E---------------------TPMS------- 126 (266)
T ss_dssp HHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHT---T---------------------CCCC-------
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc---c---------------------ccch-------
Confidence 6677777777888886 666666667777776666644432 1 0111
Q ss_pred CCchhhhhhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCChhhhhhhhcchhHHHHHhhcCCCC
Q 001144 639 LPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASI 718 (1141)
Q Consensus 639 ~p~~~~~~lG~lvg~l~p~C~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~ 718 (1141)
..-.+.++-.+.-+++|+...+|..+.+++..+..+.-
T Consensus 127 -----~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~------------------------------------- 164 (266)
T 2of3_A 127 -----QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG------------------------------------- 164 (266)
T ss_dssp -----HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------------------------------------
T ss_pred -----HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------------------------------------
Confidence 01246677778889999999999999998876653210
Q ss_pred CChhHHHHHHHHHHhhCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhcCc
Q 001144 719 DPSEVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITD 798 (1141)
Q Consensus 719 ~~~~~~~~i~~~~~k~L~~~el~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i~~ 798 (1141)
...+|. .+++|+.+.+.-.-.+....+..+++.+|... .+-+ .....|...+. ..+
T Consensus 165 -~~~v~~--------------------~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~-~~~l-~~~~~ia~ll~-D~d 220 (266)
T 2of3_A 165 -PLKMTP--------------------MLLDALKSKNARQRSECLLVIEYYITNAGISP-LKSL-SVEKTVAPFVG-DKD 220 (266)
T ss_dssp -HHHHHH--------------------HHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG-GGGG-CHHHHHGGGGG-CSS
T ss_pred -HHHHHH--------------------HHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc-cccc-cchHHHHHHHc-CCC
Confidence 011111 24578877775555888889999999999874 3312 01144444444 478
Q ss_pred HHHHHHHHHHHHHhhhcccchhhHHHHhhhhcccccccccccccCCCChhhHHHHhhcCcchHHHHHHHHHHHHc
Q 001144 799 KHLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALN 873 (1141)
Q Consensus 799 ~~~r~~~l~ai~lLa~~h~~~Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~aLa~~~~l~~~vL~~LL~~L~ 873 (1141)
..+|++++.++..+-.+-. |++|+.++. +....+..|-++++
T Consensus 221 ~~VR~aAl~~lve~y~~~G------------------------------d~v~k~lg~---L~~~~~~~l~er~~ 262 (266)
T 2of3_A 221 VNVRNAAINVLVACFKFEG------------------------------DQMWKAAGR---MADKDKSLVEERIK 262 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHT------------------------------THHHHHHCC---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh------------------------------HHHHHHHhc---CCHHHHHHHHHHHh
Confidence 8999999998875554422 446777752 66677777766665
No 62
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=83.89 E-value=0.85 Score=43.58 Aligned_cols=90 Identities=20% Similarity=0.253 Sum_probs=59.5
Q ss_pred HHHHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccchhhhhhHHH
Q 001144 1008 QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQ 1087 (1141)
Q Consensus 1008 ~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~kv~~~~~~ 1087 (1141)
+.-...+...|++++..-|..|+-.+.++ +... +..|.+.+.|+++.||..+++.||++.. +.
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~-----~~~~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------~~ 73 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRM-----GDEA-----FEPLLESLSNEDWRIRGAAAWIIGNFQD-------ER 73 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSC-----SSTT-----HHHHHHGGGCSCHHHHHHHHHHHGGGCS-------HH
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHh-----CchH-----HHHHHHHHcCCCHHHHHHHHHHHHhcCC-------HH
Confidence 34455667778888887887777555443 1211 3566777889999999999999999864 23
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHH
Q 001144 1088 VLSVILALLDDLDESVQLTAVSCLLTI 1114 (1141)
Q Consensus 1088 lL~all~~l~d~~~~vvleam~~L~~l 1114 (1141)
.++.+...+.|.+..|...|..+|+++
T Consensus 74 a~~~L~~~L~d~~~~VR~~A~~aL~~~ 100 (131)
T 1te4_A 74 AVEPLIKLLEDDSGFVRSGAARSLEQI 100 (131)
T ss_dssp HHHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 456666667788889999999988875
No 63
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=83.26 E-value=1.1e+02 Score=38.89 Aligned_cols=74 Identities=11% Similarity=0.007 Sum_probs=47.4
Q ss_pred ccccchhHHHHHHHhhhcCCCchhh-----hcchHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhcccccCcccc-ccee
Q 001144 9 LKEEHLSVGALYVLKHLLPRSSEAW-----HSKRPLLLEAVKSLLDEQNLAVQKAISELIVVMASHCYLIGPSGE-LFVE 82 (1141)
Q Consensus 9 ~~~E~~Rvg~L~vlrhlins~~~~~-----~~k~~~i~~~vk~~l~d~~~kVr~al~~~I~ama~~~yl~~~~g~-~~i~ 82 (1141)
+.+...|.-+..+||+.|+..-..+ +.-|..|+..+...-.+ ...||..+.++|..++.++|. .| .++.
T Consensus 51 ~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~-~~~vr~kl~~~la~i~~~~~p----~Wp~~l~ 125 (971)
T 2x1g_F 51 GKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGG-PKIVLNRLCISLGAYIVHMLG----EWPGAIE 125 (971)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHTTC----C------
T ss_pred CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHccc----cccHHHH
Confidence 3467889999999999997533332 22244555554433222 478999999999999999986 34 2556
Q ss_pred eeecc
Q 001144 83 YLVRH 87 (1141)
Q Consensus 83 fiv~q 87 (1141)
.++..
T Consensus 126 ~l~~~ 130 (971)
T 2x1g_F 126 EVINT 130 (971)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
No 64
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=82.49 E-value=1.5 Score=47.27 Aligned_cols=101 Identities=18% Similarity=0.158 Sum_probs=74.3
Q ss_pred ChhHHHHHHHHHh-hhcCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccchhhh
Q 001144 1004 PKEVQTICLILTK-SINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIH 1082 (1141)
Q Consensus 1004 ~~~~~~i~~~L~~-~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~kv~ 1082 (1141)
...++.++..+.. .++.+...-|..|+-.+.++-... ......++..|...++|+++.||..++++||++...
T Consensus 85 ~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~---~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~--- 158 (280)
T 1oyz_A 85 KKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKN---PIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK--- 158 (280)
T ss_dssp TTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred cccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC---CcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH---
Confidence 3457777776663 456666666777777777653221 123466999999999999999999999999988642
Q ss_pred hhHHHHHHHHHhhccCCChhHHHHHHHHHHHH
Q 001144 1083 QYATQVLSVILALLDDLDESVQLTAVSCLLTI 1114 (1141)
Q Consensus 1083 ~~~~~lL~all~~l~d~~~~vvleam~~L~~l 1114 (1141)
..++.+...+.|.+..|...|..+|+.+
T Consensus 159 ----~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 159 ----ATIPLLINLLKDPNGDVRNWAAFAININ 186 (280)
T ss_dssp ----CCHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 2467777778888889999999999887
No 65
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=82.03 E-value=2.1 Score=46.11 Aligned_cols=89 Identities=19% Similarity=0.165 Sum_probs=56.3
Q ss_pred HHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccchhhhhhHHHHH
Q 001144 1010 ICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVL 1089 (1141)
Q Consensus 1010 i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~kv~~~~~~lL 1089 (1141)
.+..|...+++++..-|..|+-.+..+ ... . ...+..|.+.+.|+++.||..++++||++... ..+
T Consensus 160 ~~~~L~~~l~d~~~~vr~~a~~aL~~~-~~~--~----~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~~-------~~~ 225 (280)
T 1oyz_A 160 TIPLLINLLKDPNGDVRNWAAFAININ-KYD--N----SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDK-------RVL 225 (280)
T ss_dssp CHHHHHHHHTCSSHHHHHHHHHHHHHH-TCC--C----HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCG-------GGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhh-ccC--c----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCH-------hhH
Confidence 344555566666666666666555554 111 1 23566777778888899999888888887632 234
Q ss_pred HHHHhhccCCChhHHHHHHHHHHHH
Q 001144 1090 SVILALLDDLDESVQLTAVSCLLTI 1114 (1141)
Q Consensus 1090 ~all~~l~d~~~~vvleam~~L~~l 1114 (1141)
+.++..+.|. +|...|+..|+++
T Consensus 226 ~~L~~~l~d~--~vr~~a~~aL~~i 248 (280)
T 1oyz_A 226 SVLCDELKKN--TVYDDIIEAAGEL 248 (280)
T ss_dssp HHHHHHHTSS--SCCHHHHHHHHHH
T ss_pred HHHHHHhcCc--cHHHHHHHHHHhc
Confidence 5555555543 3777777777765
No 66
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=80.10 E-value=3.4 Score=45.74 Aligned_cols=109 Identities=15% Similarity=0.113 Sum_probs=76.8
Q ss_pred HHHHHHHhhhcC-CcccchhHHHHHHHHhhhccC-CccchHH-HHHHHHhhhcCCCCchhhhhhccccCCccch--hh-h
Q 001144 1009 TICLILTKSINR-QQRFQREAAAAALSEFVRYSG-GFDSLLE-QMVEALCRHVSDESPTVRGLCLRGLVQIPSI--HI-H 1082 (1141)
Q Consensus 1009 ~i~~~L~~~L~s-~~~~qRi~a~af~sELL~~~~-~~~~l~~-~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~--kv-~ 1082 (1141)
+.+..|+..|++ +...-|..|+-.++-+.+... ....+.+ ..+..|..-++++++.||.-+...|+|++.+ .. .
T Consensus 124 g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~ 203 (296)
T 1xqr_A 124 GALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKG 203 (296)
T ss_dssp THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred CCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHH
Confidence 345566667764 345566777777888876533 2222333 2666777777888999999999999999765 11 1
Q ss_pred -hhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhcc
Q 001144 1083 -QYATQVLSVILALLDDLDESVQLTAVSCLLTILKS 1117 (1141)
Q Consensus 1083 -~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~ 1117 (1141)
.....+++.++..|..++..|...|+.+|++|+..
T Consensus 204 ~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 204 TLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 11235678888888888889999999999999976
No 67
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=75.27 E-value=5.6 Score=50.15 Aligned_cols=109 Identities=11% Similarity=0.125 Sum_probs=75.4
Q ss_pred HHHHHHHHhhhcCCcc-cchhHHHHHHHHhhhccC-CccchHHH-HHHHHhhhcCCCCchhhhhhccccCCccch--hhh
Q 001144 1008 QTICLILTKSINRQQR-FQREAAAAALSEFVRYSG-GFDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPSI--HIH 1082 (1141)
Q Consensus 1008 ~~i~~~L~~~L~s~~~-~qRi~a~af~sELL~~~~-~~~~l~~~-~l~~L~~~l~D~~~~VR~lslrGLgnl~~~--kv~ 1082 (1141)
.+.+..|+.+|.+... .++.-|...++-|...++ ......+. .+..|.+-+.++++.||..+.+.++|++.+ ...
T Consensus 579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~ 658 (810)
T 3now_A 579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIK 658 (810)
T ss_dssp HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHH
T ss_pred hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHH
Confidence 3456667777765422 344556667777776653 12222232 555666667788999999999999999876 122
Q ss_pred hhH--HHHHHHHHhhccCCChhHHHHHHHHHHHHhc
Q 001144 1083 QYA--TQVLSVILALLDDLDESVQLTAVSCLLTILK 1116 (1141)
Q Consensus 1083 ~~~--~~lL~all~~l~d~~~~vvleam~~L~~lL~ 1116 (1141)
.+. ...++.++..++..+..+..+|..+|+.+-.
T Consensus 659 ~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 659 MFEGNNDRVKFLALLCEDEDEETATACAGALAIITS 694 (810)
T ss_dssp HHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Confidence 232 3578899999988888999999999998876
No 68
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=74.23 E-value=6.5 Score=42.84 Aligned_cols=165 Identities=16% Similarity=0.193 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHhhhHHHHHHHHHHhhhccCCCCCCCCh--hHHHHHHHHHHHHhh---CChhH---
Q 001144 901 LQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEP--LRAILTSFQAFCECV---GDLEM--- 972 (1141)
Q Consensus 901 plaAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P--~~~aleAlk~lL~~~---g~~~~--- 972 (1141)
-++|...|.+.+... . +.+....--+|--+-+++. . .|| ...+++++..++.+. ||.-.
T Consensus 63 ~~~ale~L~~~l~~~--~--~~~~~~lDll~kw~~lr~~------d---~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~e 129 (266)
T 2of3_A 63 HLAALDSLVRLADTS--P--RSLLSNSDLLLKWCTLRFF------E---TNPAALIKVLELCKVIVELIRDTETPMSQEE 129 (266)
T ss_dssp HHHHHHHHHHHHHHC--H--HHHHHTHHHHHHHHHHHTT------S---CCHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHHhhhC--h--HHHHHHHHHHHHHHHHHHh------C---CCHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 467888888877654 1 1221111111222222332 1 244 456778887777654 22111
Q ss_pred -----HHHHHhcCCCCchhhhHhhHHHHHHHHhhcCChhHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchH
Q 001144 973 -----RKILARDGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLL 1047 (1141)
Q Consensus 973 -----~~~le~~g~W~~~~~~~~GV~lLAram~~~~~~~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~ 1047 (1141)
-.-+++.|. +.+.+-+.+..+-+.+..-.+ -..++.++...+++.+-++|.-++-.+..+++... .. .
T Consensus 130 a~~~lP~LveKlGd--~k~~vR~~~r~il~~l~~v~~--~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G-~~--~ 202 (266)
T 2of3_A 130 VSAFVPYLLLKTGE--AKDNMRTSVRDIVNVLSDVVG--PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAG-IS--P 202 (266)
T ss_dssp HHHHHHHHHHGGGC--SSHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC-SG--G
T ss_pred HHHHHHHHHHHhCC--ChHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC-CC--c
Confidence 123666666 667888898888888876443 45688889889999999999999988899888865 22 1
Q ss_pred HHHH---HHHhhhcCCCCchhhhhhccccCCccch---hhhhhH
Q 001144 1048 EQMV---EALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYA 1085 (1141)
Q Consensus 1048 ~~~l---~~L~~~l~D~~~~VR~lslrGLgnl~~~---kv~~~~ 1085 (1141)
...+ ..+++.+.|+|..||..++..+..+-.+ ++.++.
T Consensus 203 ~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~l 246 (266)
T 2of3_A 203 LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAA 246 (266)
T ss_dssp GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 2356 7889999999999999999888866443 444443
No 69
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=72.90 E-value=49 Score=35.45 Aligned_cols=197 Identities=11% Similarity=0.068 Sum_probs=108.1
Q ss_pred hhhhcCChhHHHhhHHHHHHHHHHHHHHhccccccccCCCCCcccccchhhccccCCCCCCCccCCCchhhhhhhhHHHH
Q 001144 574 DQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIM 653 (1141)
Q Consensus 574 ~pWl~S~k~~EReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~f~~~p~~~~~p~~~~~~lG~lvg~ 653 (1141)
+-.+.|.+=-+|.-|+.-...+++.... ... ++ ..+..+|.+.+.
T Consensus 15 ~e~l~sk~WK~R~eale~l~~~~~~~~~--------------------~~~----------~~-----~~~~~~~~~~~~ 59 (278)
T 4ffb_C 15 EERLTYKLWKARLEAYKELNQLFRNSVG--------------------DIS----------RD-----DNIQIYWRDPTL 59 (278)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHTC---------------------------------------------CCTTSCTHH
T ss_pred HHhcccCcHHHHHHHHHHHHHHHhhCcc--------------------ccc----------ch-----hHHHHHHHHHHH
Confidence 4567788888999999876555541110 000 00 012256777777
Q ss_pred hhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCChhhhhhhhcc-hhHHHHHhhcCCCCCChhHHH---HHHH
Q 001144 654 YLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSS-LEDVIAILRSDASIDPSEVFN---RIVS 729 (1141)
Q Consensus 654 l~p~C~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~-l~~l~~~~~~~~~~~~~~~~~---~i~~ 729 (1141)
+.-+..|+|..+...|++++..+... .+...... ......... +..+++ ..+......+-. ..+-
T Consensus 60 lkk~l~DsN~~v~~~al~~l~~~~~~-------~~~~~~~~-~~~~~~~~~~l~~lve---K~l~~~k~~~~~~a~~~l~ 128 (278)
T 4ffb_C 60 FAQYITDSNVVAQEQAIVALNSLIDA-------FASSSLKN-AHNITLISTWTPLLVE---KGLTSSRATTKTQSMSCIL 128 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTT-------CC---CCH-HHHHHHHHHHHHHHHH---HTSSCCCHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHH-------hhhhhccc-chhHHHHHHHHHHHHH---HHhcCccHHHHHHHHHHHH
Confidence 77777899999999999999877521 11110000 000000000 111222 112222222221 1222
Q ss_pred HHHhh-CChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccch-h-hHhHHHHHHHHHhhhcCcHHHHHHHH
Q 001144 730 SVCIL-LTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSE-T-DVSRTTQSLLSAAVHITDKHLRLETL 806 (1141)
Q Consensus 730 ~~~k~-L~~~el~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e-~-dV~eIv~~i~~~L~~i~~~~~r~~~l 806 (1141)
.+... -+... ++..++.++...++....++..+|..+++..|..... + .++.++..+...+ ..+++.+|.++.
T Consensus 129 ~~~~~~~~~~~---~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l-~d~~~~VR~aA~ 204 (278)
T 4ffb_C 129 SLCGLDTSITQ---SVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLA-GHGDRNVRSQTM 204 (278)
T ss_dssp HHHHTSSSSHH---HHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHH-TCSSHHHHHHHH
T ss_pred HHHHhcCcHHH---HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHH-hCCcHHHHHHHH
Confidence 22222 23333 3455668888988888899999999999999987521 1 1334444444444 457799999999
Q ss_pred HHHHHhhhcccchh
Q 001144 807 GAISCLAENTNSKI 820 (1141)
Q Consensus 807 ~ai~lLa~~h~~~V 820 (1141)
+.+..+-++.-+.+
T Consensus 205 ~l~~~ly~~~G~~~ 218 (278)
T 4ffb_C 205 NLIVEIYKVTGNNS 218 (278)
T ss_dssp HHHHHHHTC-----
T ss_pred HHHHHHHHHhCcch
Confidence 99999888765433
No 70
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=72.17 E-value=72 Score=41.06 Aligned_cols=179 Identities=12% Similarity=0.086 Sum_probs=100.9
Q ss_pred hHHHHHHhhhHHHHHHHHHHhhhccCCCCC---CCCh-----hHHHHHHHHHHHHhhCChhHHH----HHHh--------
Q 001144 919 GKKAVEKSYAPVLAALTLQLGSCHGLASSG---QHEP-----LRAILTSFQAFCECVGDLEMRK----ILAR-------- 978 (1141)
Q Consensus 919 ~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~---~~~P-----~~~aleAlk~lL~~~g~~~~~~----~le~-------- 978 (1141)
.....+.+|++|+-+++.++.|--+..... .-+. .|-.+.+++-.+...|...+.. .+..
T Consensus 372 ~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~ 451 (980)
T 3ibv_A 372 LSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATL 451 (980)
T ss_dssp CCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcc
Confidence 567778999999999999988843221100 0111 4555556666666666555554 3332
Q ss_pred --cCCCCchhhhHhhHHHHHHHHh---hc---CChhHHHHHHHHHhhhcCCc--ccchhHHHHHHHHhhhccC---Cccc
Q 001144 979 --DGEQNDKEKWINLIGDVAGCVS---IK---RPKEVQTICLILTKSINRQQ--RFQREAAAAALSEFVRYSG---GFDS 1045 (1141)
Q Consensus 979 --~g~W~~~~~~~~GV~lLAram~---~~---~~~~~~~i~~~L~~~L~s~~--~~qRi~a~af~sELL~~~~---~~~~ 1045 (1141)
...|...|--.-.+..+|-++. .+ ..+.++.++..+...+++.. ..+..+..++|-=+-++.. ....
T Consensus 452 ~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~ 531 (980)
T 3ibv_A 452 SPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESA 531 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCT
T ss_pred cCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCch
Confidence 1225422222222222222211 10 11356677777777776533 3455554444322222221 1224
Q ss_pred hHHHHHHHHhh--hcCCCCchhhhhhccccCCccch---hhhhhHHHHHHHHHhhcc
Q 001144 1046 LLEQMVEALCR--HVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLD 1097 (1141)
Q Consensus 1046 l~~~~l~~L~~--~l~D~~~~VR~lslrGLgnl~~~---kv~~~~~~lL~all~~l~ 1097 (1141)
.+..+++.+.. ++.|+++.||.-+-..+.++... ++..|.+.+|..+-..+.
T Consensus 532 ~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~ 588 (980)
T 3ibv_A 532 AIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLN 588 (980)
T ss_dssp THHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGC
T ss_pred hHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhc
Confidence 67789999999 99999999998887777766443 455677777777765554
No 71
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=70.67 E-value=2.4e+02 Score=36.16 Aligned_cols=77 Identities=19% Similarity=0.151 Sum_probs=64.5
Q ss_pred CCCchhhhhhccccCCccch--hhhhhHHHHHHHHHh--hccCCChhHHHHHHHHHHHHhccCCCCCccchHHHHHHHhc
Q 001144 1060 DESPTVRGLCLRGLVQIPSI--HIHQYATQVLSVILA--LLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLR 1135 (1141)
Q Consensus 1060 D~~~~VR~lslrGLgnl~~~--kv~~~~~~lL~all~--~l~d~~~~vvleam~~L~~lL~~l~~~~~~~~l~~ia~rlR 1135 (1141)
++.|.||..+.--+|....- .-..|.+.+|+++++ |+.+++..|...|-..+.++.+.... .+.+++-.|-.+++
T Consensus 506 ~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~-~L~~~~~~il~~l~ 584 (980)
T 3ibv_A 506 HPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK-QVVNYTESSLAMLG 584 (980)
T ss_dssp CCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT-TCSSSHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH-HhhhHHHHHHHHHH
Confidence 78899999998888865443 123688999999999 99998899999999999999998876 57788888888888
Q ss_pred cc
Q 001144 1136 NL 1137 (1141)
Q Consensus 1136 ~l 1137 (1141)
++
T Consensus 585 ~l 586 (980)
T 3ibv_A 585 DL 586 (980)
T ss_dssp GG
T ss_pred Hh
Confidence 75
No 72
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=67.47 E-value=33 Score=44.09 Aligned_cols=286 Identities=11% Similarity=0.125 Sum_probs=140.0
Q ss_pred HHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhcccc-hhhHHHH
Q 001144 747 CTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNS-KIVFNEV 825 (1141)
Q Consensus 747 ll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~h~~-~Vv~~~L 825 (1141)
++.++.......+..|+.-+-.++...+..- .- -..+++.+..++..-... .+++.++..|+++... ..++-.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e~~~ 93 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIEH-DV-PEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVEPYI 93 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS-SC-CHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred HHhhccccchhHHHHHHHHHHHHHhcccccc-cc-chhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcccch
Confidence 4455655445555667767777777554332 11 125667777766654444 8888888888866532 1122012
Q ss_pred hhhhcccccccccccccCCCChhhHHHHhhcCcchHHHHHHHHHHHHccCCCccCCCCCCCCCCCCCCcccchhhHHHHH
Q 001144 826 LATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAI 905 (1141)
Q Consensus 826 L~~~~~~~~~~d~~~~~~plP~d~~W~aLa~~~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~plaAt 905 (1141)
+ ..+..+++..- |++. .-+.+ ..+|.
T Consensus 94 ~------------------------------------~~~~~~~~~~~---------dk~~------~v~~a---a~~~~ 119 (986)
T 2iw3_A 94 V------------------------------------QLVPAICTNAG---------NKDK------EIQSV---ASETL 119 (986)
T ss_dssp H------------------------------------TTHHHHHHHTT---------CSSH------HHHHH---HHHHH
T ss_pred H------------------------------------HHHHHHHHHhc---------CCch------HHHHH---HHHHH
Confidence 2 01222222111 1110 00001 34455
Q ss_pred HHHHHHHhcCCcchHHHHHHhhhHHHHHHHHHHhhhccCCCCCCCChhH---HHHHHHHHHHHhhCChhHHHHHHh----
Q 001144 906 LALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLR---AILTSFQAFCECVGDLEMRKILAR---- 978 (1141)
Q Consensus 906 ~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~---~aleAlk~lL~~~g~~~~~~~le~---- 978 (1141)
.|+...+.. .++...+|.||-.|-. + .=|+ .++..+..|-.++ ..++...|-.
T Consensus 120 ~~~~~~~~~------~a~~~~~~~~~~~~~~----------~---~kw~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~ 179 (986)
T 2iw3_A 120 ISIVNAVNP------VAIKALLPHLTNAIVE----------T---NKWQEKIAILAAFSAMVDAA-KDQVALRMPELIPV 179 (986)
T ss_dssp HHHHHHSCG------GGHHHHHHHHHHHHHH----------C---CCHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHhCCH------HHHHHHHHHHHHHhcc----------c---cchHHHHHHHHHHHHHHHHh-HHHHHHhccchhcc
Confidence 555544433 2456667777665511 0 0122 3445555555444 3445444443
Q ss_pred --cCCCC-chhhhHhhHHHHHHHHh-hcCC---hhHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHHHH
Q 001144 979 --DGEQN-DKEKWINLIGDVAGCVS-IKRP---KEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMV 1051 (1141)
Q Consensus 979 --~g~W~-~~~~~~~GV~lLAram~-~~~~---~~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l 1051 (1141)
+.-|+ .++-=..+...+..... ..|. +.+|.++..+..=-+=+.+-+.+.|+.|.+| .+.+.+--++
T Consensus 180 ~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~------v~~~~l~~~~ 253 (986)
T 2iw3_A 180 LSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPETVHLLGATTFVAE------VTPATLSIMV 253 (986)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSC------CCHHHHHHHH
T ss_pred hHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEee------ecchhHHHHH
Confidence 56677 33333333332222211 1121 2344444444311111222344444444444 1333333355
Q ss_pred HHHhhhcCCCCchhhhhhccccCCccch-----hhhhhHHHHHHHHHhhccCCCh----hHHHHHHHHHHHHhcc
Q 001144 1052 EALCRHVSDESPTVRGLCLRGLVQIPSI-----HIHQYATQVLSVILALLDDLDE----SVQLTAVSCLLTILKS 1117 (1141)
Q Consensus 1052 ~~L~~~l~D~~~~VR~lslrGLgnl~~~-----kv~~~~~~lL~all~~l~d~~~----~vvleam~~L~~lL~~ 1117 (1141)
=.|.+++++.+..+++-+.==..||..- .++.+.|.++|.+-.-.+...+ +++..|+.+|.++-..
T Consensus 254 p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 254 PLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 5677788877755554444444555332 5677888888887766555332 7778888888887665
No 73
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=65.99 E-value=26 Score=36.04 Aligned_cols=126 Identities=18% Similarity=0.263 Sum_probs=86.7
Q ss_pred HhhcCChhHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccc
Q 001144 999 VSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS 1078 (1141)
Q Consensus 999 m~~~~~~~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~ 1078 (1141)
++.-+|..+++++--+.-...-..+.-||--.-.+-|...-.+ .+...+..-+..-+.|+|..=|..+|-=+|-+..
T Consensus 97 la~i~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP---~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 97 MAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANP---MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp HHHHCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred HHHhCHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhCh---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 3445788888888888777777766666655555666655433 3444455556666678998878777666666666
Q ss_pred hhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCCCCccchHHHH
Q 001144 1079 IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNL 1130 (1141)
Q Consensus 1079 ~kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~l~~~~~~~~l~~i 1130 (1141)
++. +|...-|+-+.+.++|.|+-|...|+.+|.++-..=++ ++++....
T Consensus 174 n~~-~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk--lRkii~~k 222 (253)
T 2db0_A 174 NSF-KYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK--LRKVVIKR 222 (253)
T ss_dssp TTH-HHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH--HHHHHHHH
T ss_pred cCc-cccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH--HHHHHHHH
Confidence 655 47777899999999999999988999998887544322 55544443
No 74
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=65.60 E-value=8.9 Score=41.42 Aligned_cols=71 Identities=14% Similarity=0.176 Sum_probs=45.5
Q ss_pred hHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccC-Cc---cchHHHHHHHHhhhcCCCCchhhhhhccccCCc
Q 001144 1006 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSG-GF---DSLLEQMVEALCRHVSDESPTVRGLCLRGLVQI 1076 (1141)
Q Consensus 1006 ~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~-~~---~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl 1076 (1141)
....++..+.+.+++.....|..++.++++++.... .. ...++.++..+...+.|+|+.||..+..-++.+
T Consensus 136 ~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 136 SITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEI 210 (278)
T ss_dssp SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 455667777777777777777777777777776633 11 122344555666677777777777776665554
No 75
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=62.24 E-value=1.1e+02 Score=39.15 Aligned_cols=74 Identities=12% Similarity=0.089 Sum_probs=53.6
Q ss_pred HhHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCHHHH
Q 001144 388 DDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQL 467 (1141)
Q Consensus 388 ~~~ks~l~l~YG~va~~ap~~~l~~rve~~I~~~i~~~~~~~kd~~lK~s~l~si~~i~~al~~~~~~~~~f~f~~k~eL 467 (1141)
..+|....++.|-+..--|...+. .++..+.+-.|..++++-+.|+.+|+..- + +-..++-.++
T Consensus 626 ~~VR~gAalALGli~aGn~~~~ai---------d~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gt-n------na~~~rva~~ 689 (963)
T 4ady_A 626 AHVRCGTAFALGIACAGKGLQSAI---------DVLDPLTKDPVDFVRQAAMIALSMILIQQ-T------EKLNPQVADI 689 (963)
T ss_dssp HHHHHHHHHHHHHHTSSSCCHHHH---------HHHHHHHTCSSHHHHHHHHHHHHHHSTTC-C------TTTCTTHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHH---------HHHHHHccCCCHHHHHHHHHHHHHHhcCC-c------cccchHHHHH
Confidence 458999999999998777754432 24556666678889999999999887641 1 1123567888
Q ss_pred HHHHHHHhcc
Q 001144 468 LDYILTLMGR 477 (1141)
Q Consensus 468 l~~l~~~i~~ 477 (1141)
+..+..++.+
T Consensus 690 l~~L~~~~~d 699 (963)
T 4ady_A 690 NKNFLSVITN 699 (963)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 9988888875
No 76
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=60.22 E-value=25 Score=42.89 Aligned_cols=71 Identities=14% Similarity=0.167 Sum_probs=58.4
Q ss_pred HhHHHHHHHHHhhhcCcHHHHHHHHHHHHHhhhcccchhhHHHHhhhhcccccccccccccCCCChhhHHHHh---hcCc
Q 001144 782 VSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAF---SQHA 858 (1141)
Q Consensus 782 V~eIv~~i~~~L~~i~~~~~r~~~l~ai~lLa~~h~~~Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~aL---a~~~ 858 (1141)
+.|.|..++.++.+.+-..-|+.++.++..|++.|+.+|.. .=| ..+-..| ..|.
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~-~~l---------------------~~li~~L~~d~~D~ 76 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGI-QAM---------------------EHLIHVLQTDRSDS 76 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHH-HTH---------------------HHHHHHHHSCTTCH
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhh-hhH---------------------HHHHHHHhcccccH
Confidence 89999999999999999999999999999999999999985 322 1122333 4567
Q ss_pred chHHHHHHHHHHHHcc
Q 001144 859 VLSFLFLEHLISALNQ 874 (1141)
Q Consensus 859 ~l~~~vL~~LL~~L~~ 874 (1141)
.+...+|+.|+..+..
T Consensus 77 e~v~~~LetL~~l~~~ 92 (651)
T 3grl_A 77 EIIGYALDTLYNIISN 92 (651)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhCC
Confidence 8899999999988774
No 77
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=59.77 E-value=8.4 Score=45.03 Aligned_cols=105 Identities=9% Similarity=0.033 Sum_probs=65.7
Q ss_pred HHHhhhcCCcccchhHHHHHHHHhhhccCC-ccchHHH-HHHHHhhhcCCCCchhhhhhccccCCccch----hhhhhHH
Q 001144 1013 ILTKSINRQQRFQREAAAAALSEFVRYSGG-FDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPSI----HIHQYAT 1086 (1141)
Q Consensus 1013 ~L~~~L~s~~~~qRi~a~af~sELL~~~~~-~~~l~~~-~l~~L~~~l~D~~~~VR~lslrGLgnl~~~----kv~~~~~ 1086 (1141)
.++.+|+++...-+.-|+..+..+...... ...+.+. .+..|.+-++++++.++..+...|.|++.+ +......
T Consensus 6 ~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~ 85 (457)
T 1xm9_A 6 KAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQ 85 (457)
T ss_dssp HHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHT
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc
Confidence 345566676666667777777777644332 2123333 666777778888888998888888888764 1111122
Q ss_pred HHHHHHHhhcc-CCChhHHHHHHHHHHHHhcc
Q 001144 1087 QVLSVILALLD-DLDESVQLTAVSCLLTILKS 1117 (1141)
Q Consensus 1087 ~lL~all~~l~-d~~~~vvleam~~L~~lL~~ 1117 (1141)
..++.++..|. ..+.++..+|..+|.++-..
T Consensus 86 G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~ 117 (457)
T 1xm9_A 86 NGIREAVSLLRRTGNAEIQKQLTGLLWNLSST 117 (457)
T ss_dssp TCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC
Confidence 34667777776 45566666666666666544
No 78
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=56.28 E-value=7.6 Score=48.05 Aligned_cols=66 Identities=12% Similarity=0.158 Sum_probs=53.7
Q ss_pred hhhhhcccccchhHHHHHHHhhhcCCCchhh---hcchHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhcc
Q 001144 3 LLNKCRLKEEHLSVGALYVLKHLLPRSSEAW---HSKRPLLLEAVKSLLDEQNLAVQKAISELIVVMASHC 70 (1141)
Q Consensus 3 ll~~l~~~~E~~Rvg~L~vlrhlins~~~~~---~~k~~~i~~~vk~~l~d~~~kVr~al~~~I~ama~~~ 70 (1141)
++.+|++.+...|-+++.-|..|+. ++.+ ..+...|...+..+|.|++..||.+-+...--++.++
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~--~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQ--DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTT--SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHc--CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 4678999999999999999999996 3333 3345566677888899999999999998888887663
No 79
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=49.12 E-value=99 Score=30.82 Aligned_cols=93 Identities=9% Similarity=0.023 Sum_probs=56.9
Q ss_pred CCChhHHHHHHHHHHhhCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHhH--HHHHHHHHhhh
Q 001144 718 IDPSEVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSR--TTQSLLSAAVH 795 (1141)
Q Consensus 718 ~~~~~~~~~i~~~~~k~L~~~el~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~e--Iv~~i~~~L~~ 795 (1141)
.+|-..+-.||..|... +..-.+.+..+...|...+.+...-|-.+|..+++..|..+..+ |+. .++.+..-+..
T Consensus 30 ~~Dw~~~leicD~I~~~--~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~e-vas~~Fl~el~~l~~~ 106 (163)
T 1x5b_A 30 TEDWSLIMDICDKVGST--PNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLE-VCSRDFATEVRAVIKN 106 (163)
T ss_dssp SCCHHHHHHHHHHHHHS--SSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHH-HTSHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHhCC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHH-HhhHHHHHHHHHHHcc
Confidence 34555555667666543 23344555666677777778888889999999999999988433 653 44444433333
Q ss_pred cCcHHHHHHHHHHHHHhh
Q 001144 796 ITDKHLRLETLGAISCLA 813 (1141)
Q Consensus 796 i~~~~~r~~~l~ai~lLa 813 (1141)
-.++.+|..++..|...+
T Consensus 107 ~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 107 KAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp TCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 344556655555444433
No 80
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=47.95 E-value=18 Score=40.87 Aligned_cols=72 Identities=11% Similarity=0.198 Sum_probs=55.9
Q ss_pred HHHHHhhhcCCCCchhhhhhccccCCccch--hh--hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCCC
Q 001144 1050 MVEALCRHVSDESPTVRGLCLRGLVQIPSI--HI--HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKD 1121 (1141)
Q Consensus 1050 ~l~~L~~~l~D~~~~VR~lslrGLgnl~~~--kv--~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~l~~~ 1121 (1141)
.+..|.+-+++++..|+.-+...|+|++.+ +. .......++.+...+...++.+..+|..+|+++...-+.+
T Consensus 264 ~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 264 CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred CHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 555666677788889999999999999854 11 1222356899999999889999999999999999875443
No 81
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=47.19 E-value=7.2 Score=48.25 Aligned_cols=86 Identities=20% Similarity=0.216 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHH-HHH-HHhhhcCCCCchhhhhhccccCCccch---hh
Q 001144 1007 VQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQ-MVE-ALCRHVSDESPTVRGLCLRGLVQIPSI---HI 1081 (1141)
Q Consensus 1007 ~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~-~l~-~L~~~l~D~~~~VR~lslrGLgnl~~~---kv 1081 (1141)
+.++++. |+|+....|..|...+++++..+.....+.++ ++. .+..-+.|++..||.-+...|+|++.+ ++
T Consensus 36 i~Pll~~----L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 36 ILPVLKD----LKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp THHHHHH----HSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHH----cCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 4455443 68999999999999999999876533333333 555 456779999999999999999999764 22
Q ss_pred --hhhHHHHHHHHHhhc
Q 001144 1082 --HQYATQVLSVILALL 1096 (1141)
Q Consensus 1082 --~~~~~~lL~all~~l 1096 (1141)
..+...+++.+...+
T Consensus 112 ~~~l~~~~il~~L~~~l 128 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAA 128 (684)
T ss_dssp HHHHHHTTHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHH
Confidence 223334555554443
No 82
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=44.22 E-value=23 Score=45.87 Aligned_cols=215 Identities=13% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHhcCCcchHHHHHHhhhHHHHHHHHHHhhhc---------cCC------CCCCCChhHHHHHHHHHHHHhhCChhHHH
Q 001144 910 AFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCH---------GLA------SSGQHEPLRAILTSFQAFCECVGDLEMRK 974 (1141)
Q Consensus 910 Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~---------~~~------~~~~~~P~~~aleAlk~lL~~~g~~~~~~ 974 (1141)
++...+ ..+..-...|.+|...++-++.|=- |.. .++..+..+...++| ..+.+....++..
T Consensus 374 ~l~~e~--~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L-~~l~~l~~~~~~~ 450 (1023)
T 4hat_C 374 DLFYEP--LKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVL-VYLTHLNVIDTEE 450 (1023)
T ss_dssp HHTTST--TTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHH-HHHHHHCHHHHHH
T ss_pred HHHhch--HHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHH-HHHhccCHHHHHH
Q ss_pred HHHhc---------CCCCchhhhHhhHHHHHHHHhhc-CChhHHHHHHHHHhhhcCCcccchhHHHHHHH--------Hh
Q 001144 975 ILARD---------GEQNDKEKWINLIGDVAGCVSIK-RPKEVQTICLILTKSINRQQRFQREAAAAALS--------EF 1036 (1141)
Q Consensus 975 ~le~~---------g~W~~~~~~~~GV~lLAram~~~-~~~~~~~i~~~L~~~L~s~~~~qRi~a~af~s--------EL 1036 (1141)
.+-.. ..|..-|.-.=.++-+|.++... ..+.++.++..|...++.....+..+.++--+ |+
T Consensus 451 ~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~w 530 (1023)
T 4hat_C 451 IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRF 530 (1023)
T ss_dssp HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHH
Q ss_pred hhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccch---hhhh--------hHHHHHHHHHhhccCCChhHHH
Q 001144 1037 VRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQ--------YATQVLSVILALLDDLDESVQL 1105 (1141)
Q Consensus 1037 L~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~---kv~~--------~~~~lL~all~~l~d~~~~vvl 1105 (1141)
+.... ..++.+++.|.+++.|++|.|...+-..+.++... +... |..+++..+....++.+..-..
T Consensus 531 l~~~~---~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~ 607 (1023)
T 4hat_C 531 LKAHW---NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVH 607 (1023)
T ss_dssp HHHCH---HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHH
T ss_pred HhccH---HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHH
Q ss_pred HHHHHHHHHhccCCCCCccchHHHH
Q 001144 1106 TAVSCLLTILKSSSKDAVEPILLNL 1130 (1141)
Q Consensus 1106 eam~~L~~lL~~l~~~~~~~~l~~i 1130 (1141)
..+.+++.++..++.....+-+++.
T Consensus 608 ~lyeai~~vi~~~~~~~~~~~~l~~ 632 (1023)
T 4hat_C 608 TFYKACGIIISEERSVAERNRLLSD 632 (1023)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHhhHHHHHHH
No 83
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=40.24 E-value=7.1e+02 Score=31.96 Aligned_cols=266 Identities=11% Similarity=0.121 Sum_probs=129.7
Q ss_pred hhhhccchHHHHHHHHHHhhhccCCCChhhHHHHHHHHHHHH-h--hcCChhHHHHHHHHHHHhcccCCccchhhHHHHH
Q 001144 268 LDVVQETDWLISLGNAFTEQYVLYTPDDDHSALLHRCLGILL-Q--KVADRNYVCDKIDWMYKQANIAIPTNRLGLAKAM 344 (1141)
Q Consensus 268 l~~i~d~~W~~~L~~el~~ql~~y~~~~~eK~fL~k~lG~~L-~--~~~~~~~V~~~L~~ll~~~~~~~~~ereG~A~~~ 344 (1141)
+..+-|.+|..++..-+.+.-...+.-..-..++++.+=.++ + ...--+.++.|++.++.. + ....+|-+.=..-
T Consensus 456 f~~~~~~~~~~~l~~~l~qe~~~~~~F~~~~v~l~k~lf~l~~rn~~~~~l~~l~~~~e~L~~~-~-dk~~qr~aaEi~a 533 (997)
T 1vsy_5 456 AGHLLTREFLRDVTMNLVQDNETRGVFSSGNVSFFSLVILLISSGFCELNMSDLFELCESYYNK-D-DKASMIMSVEIVA 533 (997)
T ss_dssp HHTTCCHHHHHHHHHHHHHTTTTTCCCCHHHHHHHHHHHHHHTTTTCCCCGGGHHHHHHHTCCS-S-CHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHHHHHHhhccccCccccchHHHHHHHHHHHhcccchhhHHHHHHHHHHHhcc-c-cHHHHHHHHHHHH
Confidence 444556899999999886443333332445566676665444 1 124456678888887774 2 2333453333333
Q ss_pred HHH------hhcCHHHHHHHHHHHHhhhccccchhhhcccc-CcccccchHhHHHHHHHHHHHHHhcCCchhHHHHHHHH
Q 001144 345 GLV------AASHLDAVLEMLKGILDNIGQSLFQRLLSFFS-NSYRMEESDDIHAALALMYGYAAKYAPSTVIEARIDAL 417 (1141)
Q Consensus 345 G~~------A~~Hld~vL~~Le~~~k~~~~~~~~~~~~~~k-~~~~~~e~~~~ks~l~l~YG~va~~ap~~~l~~rve~~ 417 (1141)
|++ .....+..|+-+..+.+.. |. +-. .|....-. .|.-++.....|...-.-+|..
T Consensus 534 Gll~gsK~w~~~~~~~~w~~l~p~l~~~-----------l~~~lt--~et~~~W~---~~i~~~~~~~DprR~~~L~e~l 597 (997)
T 1vsy_5 534 GLVCGSKFMSVSDLDKRDTFIENFLAKC-----------LDYELN--HDAFEIWS---TLAWWLPAVVDLRRSKTFFCHF 597 (997)
T ss_dssp HHSSCCSSCCTTTHHHHHHHHHHHHHHH-----------HSSCCC--TTHHHHHH---HHHHHHHHHSCGGGCHHHHHHH
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHHH-----------HhccCC--chhHHHHH---HHHHHHhcCCChhhhHHHHHHH
Confidence 433 2234567777777666531 11 111 12222222 2234445556666654333311
Q ss_pred HH-H-HHHHHHhhccchhHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCHHHHHHHHHHHhccCCCCCcCCchHHHHHHHH
Q 001144 418 VG-T-NMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQA 495 (1141)
Q Consensus 418 I~-~-~i~~~~~~~kd~~lK~s~l~si~~i~~al~~~~~~~~~f~f~~k~eLl~~l~~~i~~Ep~~~L~s~~~~ll~~r~ 495 (1141)
.. . ++...-...-..+-|+.+++++.. .. .+.+..-..+++.++ +. .|- -++|+
T Consensus 598 ~~~~~~l~~~~~ssf~~~~rl~ll~~~l~------~~-----~wr~~~~~~~l~~~~--l~-h~y----------~~VRe 653 (997)
T 1vsy_5 598 INADGMFDRESDAATHQTSKIYMLRSILM------SM-----EFRAPDVGKLFDELV--FD-HPY----------DQVRQ 653 (997)
T ss_dssp TCCCCCCCCCSSCCCCCCSSHHHHHHHHH------HH-----TTSSCCCHHHHHHCC--SC-CSC----------HHHHH
T ss_pred HHhhcccCCCCCcHHHHHHHHHHHHHHHH------Hh-----ccccccHHHHHHHHH--hC-CCh----------HHHHH
Confidence 00 0 000000011233457777776543 21 233433234443333 21 221 13899
Q ss_pred HHHHHhhhhcccC--CCCChhHHHHHHHHhh-h--ccccCCCCCCchHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 001144 496 LALSACTTLVTVE--PKLTIETRNHVMKATL-G--FFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHIL 570 (1141)
Q Consensus 496 ~a~~ait~L~~L~--P~l~~e~~~~ll~~cl-s--v~~lP~~~~~~~~~l~~~l~~ll~~ll~~~~~~~~~~~~~Lq~il 570 (1141)
.+-.+++++.... |.++. ...+++.|. . ...+|+... ..... +.++.++
T Consensus 654 ~Ig~~L~~i~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~--~~~~~----------------------~~i~~~f 707 (997)
T 1vsy_5 654 AVAKLLTTLVQNQSNPSISD--PTTLLEAERNDPDGLGLPLKSV--PEKVD----------------------AYIKKQF 707 (997)
T ss_dssp HHHHHHHHHHHTSCCCCBSC--HHHHHHHHHSCSSSSCCCSSCC--CHHHH----------------------HHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCCC--HHHHHHhhccccccccCccccC--cchHH----------------------HHHHHHH
Confidence 9999888887654 55544 346776666 3 334443221 11111 2244555
Q ss_pred Hhhhhhhc-----CChhHHHhhHHHHHHHHHHHHHH
Q 001144 571 RQIDQYVS-----SPVEYQRRRSCLAVYEMLLKFRT 601 (1141)
Q Consensus 571 ~~L~pWl~-----S~k~~EReRA~~~~~~lL~~~~~ 601 (1141)
+.++.|-. ++...++.++....-.++++...
T Consensus 708 ~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~ 743 (997)
T 1vsy_5 708 EIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKE 743 (997)
T ss_dssp HHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccccCccccchHHHHHHHHHHHHHHHH
Confidence 56666655 23444556666666667774443
No 84
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=39.81 E-value=1.1e+02 Score=32.70 Aligned_cols=89 Identities=17% Similarity=0.232 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhh-cCCc-ccchhHHHHHHHHhhh--ccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccch-hh
Q 001144 1007 VQTICLILTKSI-NRQQ-RFQREAAAAALSEFVR--YSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HI 1081 (1141)
Q Consensus 1007 ~~~i~~~L~~~L-~s~~-~~qRi~a~af~sELL~--~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~-kv 1081 (1141)
...++..+.+.+ .... .-+-.+|. .|.+++. .|+ .++..+.+|..|+|+-||++++-|+-..+.. +.
T Consensus 101 ~~~~L~~ir~~va~D~~WrVre~lA~-a~~~~~~~~~pe-------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~ 172 (240)
T 3l9t_A 101 DKEILIFMRDEVSKDNNWRVQEVLAK-AFDEFCKKIEYK-------KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYF 172 (240)
T ss_dssp SHHHHHHHHHTGGGCSCHHHHHHHHH-HHHHHHHHHCTT-------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTT
T ss_pred cHHHHHHHHHHhCCCCCccHHHHHHH-HHHHHHHhcCHH-------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchh
Confidence 466666666533 2222 12333444 5557764 333 1556788999999999999998887543322 22
Q ss_pred hhhHHHHHHHHHhhccCCChhH
Q 001144 1082 HQYATQVLSVILALLDDLDESV 1103 (1141)
Q Consensus 1082 ~~~~~~lL~all~~l~d~~~~v 1103 (1141)
......+++.+-....|++.-|
T Consensus 173 k~dp~~ll~iL~~L~~D~s~yV 194 (240)
T 3l9t_A 173 KENPNEAIRRIADLKEDVSEYV 194 (240)
T ss_dssp TTCHHHHHHHHHTTTTCSCHHH
T ss_pred hcCHHHHHHHHHHhcCChHHHH
Confidence 3344455666666666655533
No 85
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=39.69 E-value=55 Score=36.98 Aligned_cols=114 Identities=13% Similarity=0.072 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhhCChhH---HHHHHhcCCCCchhhhHhhHHHHHHHHhhcC-ChhHHHHHHHHHhhhcCCcccchhHH
Q 001144 954 RAILTSFQAFCECVGDLEM---RKILARDGEQNDKEKWINLIGDVAGCVSIKR-PKEVQTICLILTKSINRQQRFQREAA 1029 (1141)
Q Consensus 954 ~~aleAlk~lL~~~g~~~~---~~~le~~g~W~~~~~~~~GV~lLAram~~~~-~~~~~~i~~~L~~~L~s~~~~qRi~a 1029 (1141)
+...-+++.+... .+++ .+.+.++-. ++..++.|.++ |+|+.-. +..+..+...+...+.+.+..=|.+|
T Consensus 86 rLvYLyl~~~~~~--~~e~iLv~Nsl~kDl~--~~N~~iR~lAL--RtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A 159 (355)
T 3tjz_B 86 RMCYLTIKEMSCI--AEDVIIVTSSLTKDMT--GKEDSYRGPAV--RALCQITDSTMLQAIERYMKQAIVDKVPSVSSSA 159 (355)
T ss_dssp HHHHHHHHHHTTT--SSCGGGGHHHHHHHHH--SSCHHHHHHHH--HHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHHHHHHhCCC--HHHHHHHHHHHHhhcC--CCcHhHHHHHH--HHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 4566666664444 1222 233332211 45567777644 6666544 34567777777777777777667766
Q ss_pred HHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCc
Q 001144 1030 AAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQI 1076 (1141)
Q Consensus 1030 ~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl 1076 (1141)
+.-...++... ..+++..++.+.+.+.|.||.|-.-++.-|..+
T Consensus 160 ~l~~~kL~~~~---pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei 203 (355)
T 3tjz_B 160 LVSSLHLLKCS---FDVVKRWVNEAQEAASSDNIMVQYHALGLLYHV 203 (355)
T ss_dssp HHHHHHHTTTC---HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccC---HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 66666665533 245667778888888888887775444433333
No 86
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=39.57 E-value=3.7e+02 Score=31.22 Aligned_cols=108 Identities=12% Similarity=0.096 Sum_probs=68.7
Q ss_pred HHHHHHHhhhcCCcccchhHHHHHHHHhhhccC--CccchHHH-HHHHHhhh-cCCCCchhhhhhccccCCccch----h
Q 001144 1009 TICLILTKSINRQQRFQREAAAAALSEFVRYSG--GFDSLLEQ-MVEALCRH-VSDESPTVRGLCLRGLVQIPSI----H 1080 (1141)
Q Consensus 1009 ~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~--~~~~l~~~-~l~~L~~~-l~D~~~~VR~lslrGLgnl~~~----k 1080 (1141)
+.+..|+..|+++.+.-+..|+..+.-+-.... ....+.+. .+..|.+- +..+++.++.-+++.|+|++.+ +
T Consensus 243 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk 322 (458)
T 3nmz_A 243 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 322 (458)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred CcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHH
Confidence 446677888888877777777777766644211 11222222 44555554 3456788999999999999873 2
Q ss_pred hhhh-HHHHHHHHHhhccCCCh----hHHHHHHHHHHHHhc
Q 001144 1081 IHQY-ATQVLSVILALLDDLDE----SVQLTAVSCLLTILK 1116 (1141)
Q Consensus 1081 v~~~-~~~lL~all~~l~d~~~----~vvleam~~L~~lL~ 1116 (1141)
...- ....++.++..+...++ .++.+|..+|++|-.
T Consensus 323 ~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~ 363 (458)
T 3nmz_A 323 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS 363 (458)
T ss_dssp HHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHh
Confidence 2111 24567888888876544 377788888877654
No 87
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=39.32 E-value=32 Score=40.37 Aligned_cols=69 Identities=12% Similarity=0.214 Sum_probs=54.7
Q ss_pred HHHHHhhhcCCCCchhhhhhccccCCccch--hhh--hhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccC
Q 001144 1050 MVEALCRHVSDESPTVRGLCLRGLVQIPSI--HIH--QYATQVLSVILALLDDLDESVQLTAVSCLLTILKSS 1118 (1141)
Q Consensus 1050 ~l~~L~~~l~D~~~~VR~lslrGLgnl~~~--kv~--~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~l 1118 (1141)
.+..|.+-+.+++..|+.-+...|+|++.+ +.+ ......++.+.+.+...++.+...|..+|++|+..-
T Consensus 380 ~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 380 CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 556677777888899999999999999853 211 222356889999998889999999999999999764
No 88
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=38.99 E-value=2.1e+02 Score=27.51 Aligned_cols=97 Identities=9% Similarity=0.027 Sum_probs=60.9
Q ss_pred CCCChhHHHHHHHHHHhhCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhH--hHHHHHHHHHhh
Q 001144 717 SIDPSEVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDV--SRTTQSLLSAAV 794 (1141)
Q Consensus 717 ~~~~~~~~~~i~~~~~k~L~~~el~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV--~eIv~~i~~~L~ 794 (1141)
..+|-..+-.||..+... +..=.+.+..+...|...+.+...-|-.+|..+++..|..+..+ | .+.++.+..-++
T Consensus 19 ~~~dw~~ileicD~I~~~--~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~e-vas~~Fl~el~~l~~ 95 (140)
T 3ldz_A 19 TAEDWGLILDICDKVGQS--RTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLE-VCSRDFASEVSNVLN 95 (140)
T ss_dssp SSCCHHHHHHHHHHHTTS--TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHH-HSSHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHCC--CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHH-HhhHHHHHHHHHHhc
Confidence 344545555566666532 22334455556666777777777888889999999999988423 5 344444443333
Q ss_pred hcCcHHHHHHHHHHHHHhhhccc
Q 001144 795 HITDKHLRLETLGAISCLAENTN 817 (1141)
Q Consensus 795 ~i~~~~~r~~~l~ai~lLa~~h~ 817 (1141)
. +++.+|+.++..|...+..+.
T Consensus 96 ~-~~~~Vk~kil~li~~W~~~f~ 117 (140)
T 3ldz_A 96 K-GHPKVCEKLKALMVEWTDEFK 117 (140)
T ss_dssp H-SCHHHHHHHHHHHHHHHHHHT
T ss_pred c-CCHHHHHHHHHHHHHHHHHhC
Confidence 2 567788877777777765443
No 89
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=38.34 E-value=1.3e+02 Score=32.06 Aligned_cols=68 Identities=15% Similarity=0.028 Sum_probs=30.4
Q ss_pred HHHHHhhhcCCCCchhhhhhccccCCccch-hhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhcc
Q 001144 1050 MVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKS 1117 (1141)
Q Consensus 1050 ~l~~L~~~l~D~~~~VR~lslrGLgnl~~~-kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~ 1117 (1141)
+++.+.+=+...|+.|+.++++.|-|++.. .=......++.-+-..+...|..++--|+..|-+++..
T Consensus 151 V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 151 VRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 333333333444455555555555555433 11223344444444444444445555555555555443
No 90
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=38.13 E-value=1.6e+02 Score=30.88 Aligned_cols=95 Identities=16% Similarity=0.133 Sum_probs=57.4
Q ss_pred CCChhHHHHHHHHHHhhCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHh--HHHHHHHHHhhh
Q 001144 718 IDPSEVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVS--RTTQSLLSAAVH 795 (1141)
Q Consensus 718 ~~~~~~~~~i~~~~~k~L~~~el~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~--eIv~~i~~~L~~ 795 (1141)
.+|-..+-.|+..|... +..=.+.+..+...|...+.+...-|-.+|..+++..|..+. .+|+ +.++.+..-+..
T Consensus 23 ~~dw~~ileicD~I~~~--~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~-~eias~~fl~~l~~l~~~ 99 (226)
T 3zyq_A 23 ETDWESILQICDLIRQG--DTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVH-DEVANKQTMEELKDLLKR 99 (226)
T ss_dssp SCCHHHHHHHHHHHHTT--SSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHH-HHHSSHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhCC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHH-HhhccHHHHHHHHHHhcc
Confidence 34445555677666542 222345556666777788888888999999999999999873 3253 223333222233
Q ss_pred cCcHHHHHHHHHHHHHhhhc
Q 001144 796 ITDKHLRLETLGAISCLAEN 815 (1141)
Q Consensus 796 i~~~~~r~~~l~ai~lLa~~ 815 (1141)
-+++.+|..++..|...+..
T Consensus 100 ~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 100 QVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 44556666666555555543
No 91
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=37.43 E-value=7e+02 Score=31.06 Aligned_cols=97 Identities=9% Similarity=0.048 Sum_probs=72.5
Q ss_pred ccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccch-h----hhhhHHHHHHHHHhhcc
Q 001144 1023 RFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-H----IHQYATQVLSVILALLD 1097 (1141)
Q Consensus 1023 ~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~-k----v~~~~~~lL~all~~l~ 1097 (1141)
+.-|..|+..+.-+-..+.....-...+...+.+++.+++...|..++.||+-+... + ++.. +..+..++.-+.
T Consensus 308 ~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d-~~~L~~Lv~llk 386 (778)
T 3opb_A 308 EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSN-ESFTEILLTMIK 386 (778)
T ss_dssp GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHC-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhC-HHHHHHHHHHHh
Confidence 355777888888877665522334566888999999988766699999999988665 2 3323 455788888887
Q ss_pred C-CChhHHHHHHHHHHHHhccCCC
Q 001144 1098 D-LDESVQLTAVSCLLTILKSSSK 1120 (1141)
Q Consensus 1098 d-~~~~vvleam~~L~~lL~~l~~ 1120 (1141)
. .+..+..++...|.++....+.
T Consensus 387 ~~~d~s~~Ygal~IL~NLt~~~~~ 410 (778)
T 3opb_A 387 SQKMTHCLYGLLVIMANLSTLPEE 410 (778)
T ss_dssp TTCCTTHHHHHHHHHHHTTCCCCC
T ss_pred CCCCchHHHHHHHHHHHhcCCCcc
Confidence 5 5669999999999999997664
No 92
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=35.46 E-value=36 Score=36.13 Aligned_cols=68 Identities=10% Similarity=-0.052 Sum_probs=37.7
Q ss_pred HHHHhhhcCCcc--cchhHHHHHHHHhhhc-cCCccchHHH-HHHHHhhhcCCCCchhhhhhccccCCccch
Q 001144 1012 LILTKSINRQQR--FQREAAAAALSEFVRY-SGGFDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPSI 1079 (1141)
Q Consensus 1012 ~~L~~~L~s~~~--~qRi~a~af~sELL~~-~~~~~~l~~~-~l~~L~~~l~D~~~~VR~lslrGLgnl~~~ 1079 (1141)
..++..|+++.. .-+..|+..+.-+-.. +.....+.+. .+-.|.+-++.+++.||.-+...|.|++.+
T Consensus 11 ~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~ 82 (233)
T 3tt9_A 11 ERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE 82 (233)
T ss_dssp HHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 344556677665 2233444444433322 2212122222 456666667778888888888888888763
No 93
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=35.43 E-value=84 Score=35.30 Aligned_cols=108 Identities=12% Similarity=0.096 Sum_probs=67.0
Q ss_pred HHHHHHHhhhcCCcccchhHHHHHHHHhhhccC--CccchHHH-HHHHHhhh-cCCCCchhhhhhccccCCccch----h
Q 001144 1009 TICLILTKSINRQQRFQREAAAAALSEFVRYSG--GFDSLLEQ-MVEALCRH-VSDESPTVRGLCLRGLVQIPSI----H 1080 (1141)
Q Consensus 1009 ~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~--~~~~l~~~-~l~~L~~~-l~D~~~~VR~lslrGLgnl~~~----k 1080 (1141)
+.+..|+..|+++.+.-+..|+..+.-|-.... ....+.+. .+..|.+- .+.+++.++.-+++.|+|++.+ +
T Consensus 127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk 206 (354)
T 3nmw_A 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 206 (354)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh
Confidence 446677788888877767777777766654311 11122222 34444443 2446778898889999999773 2
Q ss_pred hhhh-HHHHHHHHHhhccCCCh----hHHHHHHHHHHHHhc
Q 001144 1081 IHQY-ATQVLSVILALLDDLDE----SVQLTAVSCLLTILK 1116 (1141)
Q Consensus 1081 v~~~-~~~lL~all~~l~d~~~----~vvleam~~L~~lL~ 1116 (1141)
...- ....++.++..+.+.++ +++..|..+|+++-.
T Consensus 207 ~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~ 247 (354)
T 3nmw_A 207 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS 247 (354)
T ss_dssp HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHh
Confidence 2211 24568888888876544 477778777777653
No 94
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=35.13 E-value=2.3e+02 Score=28.36 Aligned_cols=95 Identities=8% Similarity=0.067 Sum_probs=61.1
Q ss_pred CCChhHHHHHHHHHHhhCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHh--HHHHHHHHHhh-
Q 001144 718 IDPSEVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVS--RTTQSLLSAAV- 794 (1141)
Q Consensus 718 ~~~~~~~~~i~~~~~k~L~~~el~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~--eIv~~i~~~L~- 794 (1141)
.+|-..+-.||..|... +..-.+.+..+...|...+.+...-|-.+|..+++..|..+..+ |+ +.++.+..-+.
T Consensus 28 ~~Dw~~ileicD~I~~~--~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~e-vas~~Fl~eL~kl~~~ 104 (171)
T 1juq_A 28 QEDWEYIIGFCDQINKE--LEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNE-VGKFRFLNELIKVVSP 104 (171)
T ss_dssp SCCHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHH-HTSHHHHHHHHHHHCC
T ss_pred CcCHHHHHHHHHHHHcC--CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHH-HhhHHHHHHHHHHhcc
Confidence 34555555677666544 23344556667777888888888899999999999999988433 65 23444443332
Q ss_pred ----hcCcHHHHHHHHHHHHHhhhc
Q 001144 795 ----HITDKHLRLETLGAISCLAEN 815 (1141)
Q Consensus 795 ----~i~~~~~r~~~l~ai~lLa~~ 815 (1141)
..+.+.+|..++..|...+..
T Consensus 105 k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 105 KYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp CCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 134567777776666665544
No 95
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=35.05 E-value=1.1e+02 Score=32.82 Aligned_cols=133 Identities=13% Similarity=0.081 Sum_probs=68.0
Q ss_pred chhhhHhhHHHHHHHHhh----cCChhHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcC
Q 001144 984 DKEKWINLIGDVAGCVSI----KRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVS 1059 (1141)
Q Consensus 984 ~~~~~~~GV~lLAram~~----~~~~~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~ 1059 (1141)
++..-..+...|-..+-. -+...+.+++..++..+++.+|+=-+-|+=.+=-+|-.-+-...-...+++.|.+=..
T Consensus 46 D~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik 125 (265)
T 3b2a_A 46 DETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLE 125 (265)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhc
Confidence 334444444444444444 1333444555555555555555555555555555555433111122335566666666
Q ss_pred CCCchhhhhhccccCCccchhhhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCC
Q 001144 1060 DESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSS 1119 (1141)
Q Consensus 1060 D~~~~VR~lslrGLgnl~~~kv~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~l~ 1119 (1141)
++|+.++....-++|.+ ++-...+.+.+.+.+.+..+|-.+-..|+..|..+-..-+
T Consensus 126 ~~~~il~~eaae~Lgkl---kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 126 SPDDMMRIETIDVLSKL---QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp SCCHHHHHHHHHHHHHC---CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred CCCchHHHHHHHHhCcC---CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 66666666666666665 2333344455555555555555666666666666665554
No 96
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=35.05 E-value=48 Score=38.92 Aligned_cols=74 Identities=18% Similarity=0.261 Sum_probs=55.6
Q ss_pred hhcCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccchhhhhhHHHHHHHHHhhc
Q 001144 1017 SINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALL 1096 (1141)
Q Consensus 1017 ~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~kv~~~~~~lL~all~~l 1096 (1141)
..++ ...-+..|+-|+.-|..+.+ .+.++.++.+..-..|++..||.-++|||..+..+ .+.+.+-+.+...|
T Consensus 37 ~~kg-~~k~K~LaaQ~I~kffk~FP---~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~i~kiaDvL~QlL 109 (507)
T 3u0r_A 37 GVKG-GTKEKRLAAQFIPKFFKHFP---ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG---ENLPRVADILTQLL 109 (507)
T ss_dssp GGGS-CHHHHHHHHHHHHHHGGGCG---GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TCHHHHHHHHHHHT
T ss_pred hcCC-CHHHHHHHHHHHHHHHhhCh---hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hhhhhHHHHHHHHH
Confidence 3344 35566667889999988865 36688999999999999999999999999999876 34555555554444
Q ss_pred c
Q 001144 1097 D 1097 (1141)
Q Consensus 1097 ~ 1097 (1141)
.
T Consensus 110 q 110 (507)
T 3u0r_A 110 Q 110 (507)
T ss_dssp T
T ss_pred h
Confidence 4
No 97
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=34.99 E-value=8.6e+02 Score=31.43 Aligned_cols=83 Identities=5% Similarity=0.038 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchh-------hHhHHHHHHHHHhhhcCcHHHHHHHHHHH
Q 001144 737 KDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSET-------DVSRTTQSLLSAAVHITDKHLRLETLGAI 809 (1141)
Q Consensus 737 ~~el~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~-------dV~eIv~~i~~~L~~i~~~~~r~~~l~ai 809 (1141)
+.-+...+..+++++.+.+..-..+||..+..+.+..+..+-.. -+.+|++.+-.-.... .+.....+.+|+
T Consensus 561 ~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l-~~~~~~~lyeav 639 (1073)
T 3gjx_A 561 WKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDL-QPQQVHTFYEAV 639 (1073)
T ss_dssp HHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 55667777788899998877778999999999998887766210 1455555555554444 467778899999
Q ss_pred HHhhhcccchh
Q 001144 810 SCLAENTNSKI 820 (1141)
Q Consensus 810 ~lLa~~h~~~V 820 (1141)
..++..-|.+.
T Consensus 640 ~~vi~~~p~~~ 650 (1073)
T 3gjx_A 640 GYMIGAQTDQT 650 (1073)
T ss_dssp HHHHTTCCCHH
T ss_pred HHHHHhCCCcc
Confidence 99999988655
No 98
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=30.02 E-value=45 Score=43.35 Aligned_cols=120 Identities=15% Similarity=0.223 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHhhhcCCcccc-h--hHHH-----HHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCc
Q 001144 1005 KEVQTICLILTKSINRQQRFQ-R--EAAA-----AALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQI 1076 (1141)
Q Consensus 1005 ~~~~~i~~~L~~~L~s~~~~q-R--i~a~-----af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl 1076 (1141)
..++.|+..|......+...+ + +++. +=|++++... ...++.+++.|.++..|+++.|..++...+..+
T Consensus 517 ~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h---~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i 593 (1073)
T 3gjx_A 517 RFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAH---WKFLKTVVNKLFEFMHETHDGVQDMACDTFIKI 593 (1073)
T ss_dssp HHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHC---HHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhC---HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 468899999988876664332 2 2222 2244666543 347788999999999999999998887666655
Q ss_pred cch---h--------hhhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCCCCCccchH
Q 001144 1077 PSI---H--------IHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPIL 1127 (1141)
Q Consensus 1077 ~~~---k--------v~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~l~~~~~~~~l 1127 (1141)
... + ...|..+++..+-+...+-+.+-+.+-..+++.++..++.....+-+
T Consensus 594 ~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~ 655 (1073)
T 3gjx_A 594 AQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHL 655 (1073)
T ss_dssp HHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHH
Confidence 433 1 12366777777777666667777788888999999988875533333
No 99
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=28.87 E-value=4e+02 Score=25.87 Aligned_cols=96 Identities=8% Similarity=0.013 Sum_probs=59.8
Q ss_pred CCChhHHHHHHHHHHhhCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHh--HHHHHHHHHhh-
Q 001144 718 IDPSEVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVS--RTTQSLLSAAV- 794 (1141)
Q Consensus 718 ~~~~~~~~~i~~~~~k~L~~~el~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~--eIv~~i~~~L~- 794 (1141)
.+|-..+-.+|..+... +..=.+.+..+...|...+.+...-|-.+|.++++..|..+..+ |+ +.++.+..-+.
T Consensus 16 ~~dw~~~leicD~I~~~--~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~e-vas~~Fl~eL~kl~~~ 92 (148)
T 1mhq_A 16 EQDWSAIQNFCEQVNTD--PNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSE-VAKFRFLNELIKVLSP 92 (148)
T ss_dssp SCCHHHHHHHHHHHHHS--SHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHH-HTSHHHHHHHHHTTCC
T ss_pred CcCHHHHHHHHHHHHcC--CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHH-HhhHHHHHHHHHHHcc
Confidence 34444445566666443 23344555666777788888888999999999999999999433 64 34444433222
Q ss_pred ----hcCcHHHHHHHHHHHHHhhhcc
Q 001144 795 ----HITDKHLRLETLGAISCLAENT 816 (1141)
Q Consensus 795 ----~i~~~~~r~~~l~ai~lLa~~h 816 (1141)
.-+.+.+|..++..|...+...
T Consensus 93 k~~~~~~~~~Vk~kil~li~~W~~~f 118 (148)
T 1mhq_A 93 KYLGSWATGKVKGRVIEILFSWTVWF 118 (148)
T ss_dssp STTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 1245677776666665555443
No 100
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=28.68 E-value=3.3e+02 Score=26.55 Aligned_cols=99 Identities=10% Similarity=0.024 Sum_probs=64.0
Q ss_pred CCCCChhHHHHHHHHHHhhCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHh--HHHHHHHHHh
Q 001144 716 ASIDPSEVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVS--RTTQSLLSAA 793 (1141)
Q Consensus 716 ~~~~~~~~~~~i~~~~~k~L~~~el~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~--eIv~~i~~~L 793 (1141)
...+|-..+-.+|..|... +..=.+.+..+...|..++++...-|-.+|..+++..|..+. .+|+ +.++.+..-+
T Consensus 24 l~~~dw~~ileicD~I~~~--~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh-~eias~~Fl~eL~kl~ 100 (149)
T 3g2s_A 24 NKELDWASINGFCEQLNED--FEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFH-DEVGKFRFLNELIKVV 100 (149)
T ss_dssp CSSCCHHHHHHHHHHGGGS--SSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHH-HHHTSHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHCC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHH-HHHhhHHHHHHHHHHH
Confidence 3344555555677666543 223345556667777888888888999999999999999883 3354 3344444333
Q ss_pred h-----hcCcHHHHHHHHHHHHHhhhccc
Q 001144 794 V-----HITDKHLRLETLGAISCLAENTN 817 (1141)
Q Consensus 794 ~-----~i~~~~~r~~~l~ai~lLa~~h~ 817 (1141)
. .-+.+.+|..++..|...+..++
T Consensus 101 ~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 129 (149)
T 3g2s_A 101 SPKYLGSRTSEKVKNKILELLYSWTVGLP 129 (149)
T ss_dssp CTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 2 23567788877777777776554
No 101
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=26.85 E-value=1.1e+03 Score=30.08 Aligned_cols=87 Identities=15% Similarity=0.011 Sum_probs=57.2
Q ss_pred cCChhHHHHHHHHHHHhcccCCccchhhHHHHHHHHhhcCHHHHHHHHHHHHhhhccccchhhhccccCcccccchHhHH
Q 001144 312 VADRNYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDIH 391 (1141)
Q Consensus 312 ~~~~~~V~~~L~~ll~~~~~~~~~ereG~A~~~G~~A~~Hld~vL~~Le~~~k~~~~~~~~~~~~~~k~~~~~~e~~~~k 391 (1141)
..|.+-..++|+..+...+..++.-|-|-+.|+|++..+|-+.+++.|.++.++.. .. ..+...+.++
T Consensus 387 ~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~--~~----------~~~~~~~~ir 454 (963)
T 4ady_A 387 KGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENS--GT----------SGDEDVDVLL 454 (963)
T ss_dssp SSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHS--SC----------CSCHHHHHHH
T ss_pred cCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCcc--cc----------ccccccHHHH
Confidence 34444456666666653223455668999999999999999989999988876421 00 0012235678
Q ss_pred HHHHHHHHHHHhcCCchhH
Q 001144 392 AALALMYGYAAKYAPSTVI 410 (1141)
Q Consensus 392 s~l~l~YG~va~~ap~~~l 410 (1141)
....+..|-+..-...+.+
T Consensus 455 ~gAaLGLGla~~GS~~eev 473 (963)
T 4ady_A 455 HGASLGIGLAAMGSANIEV 473 (963)
T ss_dssp HHHHHHHHHHSTTCCCHHH
T ss_pred HHHHHHHHHHhcCCCCHHH
Confidence 7888899998665554443
No 102
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=26.45 E-value=47 Score=40.21 Aligned_cols=62 Identities=13% Similarity=-0.001 Sum_probs=31.4
Q ss_pred hhcCCcccchhHHHHHHHHhhhccC-CccchHHH-HHHHHhhhcCCCCchhhhhhccccCCccc
Q 001144 1017 SINRQQRFQREAAAAALSEFVRYSG-GFDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPS 1078 (1141)
Q Consensus 1017 ~L~s~~~~qRi~a~af~sELL~~~~-~~~~l~~~-~l~~L~~~l~D~~~~VR~lslrGLgnl~~ 1078 (1141)
.|+++.+..+.-|+..+.-+-.... ....+.+. .+-.|.+-++.+++.|+..+...|+|++.
T Consensus 56 ~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~ 119 (584)
T 3l6x_A 56 MLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISF 119 (584)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTS
T ss_pred HHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 3445554444444444444432211 11112222 44556666666677777777777777765
No 103
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=26.18 E-value=1.6e+02 Score=37.74 Aligned_cols=110 Identities=10% Similarity=0.133 Sum_probs=80.0
Q ss_pred cchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCC-chhhhhhccccCCccch---hhhhhHHHHHHHHHhhccCC
Q 001144 1024 FQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDES-PTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDL 1099 (1141)
Q Consensus 1024 ~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~-~~VR~lslrGLgnl~~~---kv~~~~~~lL~all~~l~d~ 1099 (1141)
.=|-+|.+...-++...... -+..++-.|.+.+.+.. ...+..+++-++.++.. ++....|.++|.+-.+|.|+
T Consensus 110 ~v~~aa~~~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~ 187 (986)
T 2iw3_A 110 EIQSVASETLISIVNAVNPV--AIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDT 187 (986)
T ss_dssp HHHHHHHHHHHHHHHHSCGG--GHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccC
Confidence 34444554455555553311 12445555555554443 67888888888887543 77788899999999999999
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCccchHHHHHHHhc
Q 001144 1100 DESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLR 1135 (1141)
Q Consensus 1100 ~~~vvleam~~L~~lL~~l~~~~~~~~l~~ia~rlR 1135 (1141)
..+|--.|..++.++-..++..|+.|++=.|..-+.
T Consensus 188 k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~ 223 (986)
T 2iw3_A 188 KKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIA 223 (986)
T ss_dssp SHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhc
Confidence 999999999999999999999999999877665543
No 104
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=25.93 E-value=2.9e+02 Score=28.58 Aligned_cols=95 Identities=11% Similarity=0.025 Sum_probs=57.9
Q ss_pred CCChhHHHHHHHHHHhhCChHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHhH--HHHHHHHHhhh
Q 001144 718 IDPSEVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSR--TTQSLLSAAVH 795 (1141)
Q Consensus 718 ~~~~~~~~~i~~~~~k~L~~~el~~li~tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~e--Iv~~i~~~L~~ 795 (1141)
.+|-..+-.|+..|... +..-.+.+..+...|...+.+...-|-.+|..+++.-|..+..+ |+. .++.+..-+..
T Consensus 20 ~~dw~~~leicd~i~~~--~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~e-va~~~fl~~l~~l~~~ 96 (220)
T 1dvp_A 20 EPDWPSILLICDEINQK--DVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEE-VFTKENCEMFSSFLES 96 (220)
T ss_dssp SCCHHHHHHHHHHHHTT--SSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHH-HSSHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhhcCC--CcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHH-HHhHHHHHHHHHHhcC
Confidence 34444444566555422 12223444555667777778888888899999999999888433 542 44444333334
Q ss_pred cCcHHHHHHHHHHHHHhhhc
Q 001144 796 ITDKHLRLETLGAISCLAEN 815 (1141)
Q Consensus 796 i~~~~~r~~~l~ai~lLa~~ 815 (1141)
-....+|..++..|...+..
T Consensus 97 ~~~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 97 TPHENVRQKMLELVQTWAYA 116 (220)
T ss_dssp CSCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHH
Confidence 45667777777776666644
No 105
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=25.26 E-value=2.8e+02 Score=33.79 Aligned_cols=117 Identities=14% Similarity=0.099 Sum_probs=72.6
Q ss_pred hHHHHHHHHhhc--CChhHHHHHHHHHhhhcCCcccch---------hHHHHHHH-HhhhccCCccchHHHHHHHHhhhc
Q 001144 991 LIGDVAGCVSIK--RPKEVQTICLILTKSINRQQRFQR---------EAAAAALS-EFVRYSGGFDSLLEQMVEALCRHV 1058 (1141)
Q Consensus 991 GV~lLAram~~~--~~~~~~~i~~~L~~~L~s~~~~qR---------i~a~af~s-ELL~~~~~~~~l~~~~l~~L~~~l 1058 (1141)
|+..|-..+-.. ....++.+++.|.-.+....+.+. -.+ .-|+ +|++.++ -+..|.+-+
T Consensus 61 ~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~-~~~~d~f~~~~~--------~i~~Ll~lL 131 (651)
T 3grl_A 61 AMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLG-SQFTEIFIKQQE--------NVTLLLSLL 131 (651)
T ss_dssp THHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHH-HHHHHHHHHSTH--------HHHHHHHHT
T ss_pred hHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHH-HHHHHHHHcCCc--------cHHHHHHHh
Confidence 333444444433 334577777777666554332211 112 2333 3444332 455666667
Q ss_pred CCCCchhhhhhccccCCccchhhhhh------HHHHHHHHHhhccCCChhHHHHHHHHHHHHhc
Q 001144 1059 SDESPTVRGLCLRGLVQIPSIHIHQY------ATQVLSVILALLDDLDESVQLTAVSCLLTILK 1116 (1141)
Q Consensus 1059 ~D~~~~VR~lslrGLgnl~~~kv~~~------~~~lL~all~~l~d~~~~vvleam~~L~~lL~ 1116 (1141)
..++.-||..++|-|..+..+.-.++ .|.-++.+++.|+|..+.+.-||+..|..+-.
T Consensus 132 ~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~ 195 (651)
T 3grl_A 132 EEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTR 195 (651)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHT
T ss_pred cCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhc
Confidence 88899999999999998876622222 23456789999999889999999988887755
No 106
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=25.19 E-value=54 Score=32.03 Aligned_cols=69 Identities=22% Similarity=0.230 Sum_probs=44.2
Q ss_pred ChhhhhhcccccchhHHHHHHHhhhcCCCchh-hhcc--hHHHHHHHHH------hh--hhccHHHHHHHHHHHHHHhhc
Q 001144 1 MFLLNKCRLKEEHLSVGALYVLKHLLPRSSEA-WHSK--RPLLLEAVKS------LL--DEQNLAVQKAISELIVVMASH 69 (1141)
Q Consensus 1 ~Fll~~l~~~~E~~Rvg~L~vlrhlins~~~~-~~~k--~~~i~~~vk~------~l--~d~~~kVr~al~~~I~ama~~ 69 (1141)
+||+.+|..++.....++|.||+||+-...+. ..+- ...+++.++. ++ .|++.+||.+-=+++..+-..
T Consensus 52 ~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d~ 131 (140)
T 1vdy_A 52 EFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFSE 131 (140)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhCc
Confidence 37889999999999999999999999643333 2322 1233333321 11 244577887777776666543
No 107
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=25.06 E-value=1.2e+02 Score=36.67 Aligned_cols=104 Identities=14% Similarity=0.095 Sum_probs=68.8
Q ss_pred HHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchH-HHHHHHHhhhcCCC--------CchhhhhhccccCCccch--
Q 001144 1011 CLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLL-EQMVEALCRHVSDE--------SPTVRGLCLRGLVQIPSI-- 1079 (1141)
Q Consensus 1011 ~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~-~~~l~~L~~~l~D~--------~~~VR~lslrGLgnl~~~-- 1079 (1141)
+..|+.+|.++.+.-+..|+..+..|-.++. .+..+ ...+-.|.+-+.++ +..++.-+++.|+|+...
T Consensus 357 lp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~-~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~ 435 (584)
T 3l6x_A 357 LSAIADLLTNEHERVVKAASGALRNLAVDAR-NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENL 435 (584)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCChh-HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCH
Confidence 5556667777777777777777777776665 22233 23666666666655 356778889999998644
Q ss_pred -h-hhhhHHHHHHHHHhhccCC--ChhHHHHHHHHHHHHh
Q 001144 1080 -H-IHQYATQVLSVILALLDDL--DESVQLTAVSCLLTIL 1115 (1141)
Q Consensus 1080 -k-v~~~~~~lL~all~~l~d~--~~~vvleam~~L~~lL 1115 (1141)
. ........++.+...+.+. .+.++-.|-..|+.+.
T Consensus 436 ~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 436 EAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW 475 (584)
T ss_dssp HHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 1 1122235677888887765 6688888888888775
No 108
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=24.34 E-value=7.1e+02 Score=31.95 Aligned_cols=424 Identities=11% Similarity=0.056 Sum_probs=198.2
Q ss_pred hhhhHHHHhhcCccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCChhhhhhhhcchhH-HHHHhhcCCCCCChhHH
Q 001144 646 CLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLED-VIAILRSDASIDPSEVF 724 (1141)
Q Consensus 646 ~lG~lvg~l~p~C~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~-l~~~~~~~~~~~~~~~~ 724 (1141)
.+..+...+--+|.|.++.-+..|+|.+--++ +..+....+ +.+...+- +.+ +..+..++...+....-
T Consensus 505 ~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll------~gsK~w~~~-~~~~~w~~---l~p~l~~~l~~~lt~et~~~W 574 (997)
T 1vsy_5 505 NMSDLFELCESYYNKDDKASMIMSVEIVAGLV------CGSKFMSVS-DLDKRDTF---IENFLAKCLDYELNHDAFEIW 574 (997)
T ss_dssp CGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHS------SCCSSCCTT-THHHHHHH---HHHHHHHHHSSCCCTTHHHHH
T ss_pred hHHHHHHHHHHHhccccHHHHHHHHHHHHHHH------hccCCCCHH-HHHHHHHH---HHHHHHHHHhccCCchhHHHH
Confidence 35556666666899999999999999987764 111111111 11111111 222 22222224444433322
Q ss_pred HHHHHHHHhhCChHHHHHHHHHH--HHhccCC---CchhHHHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhhcCcH
Q 001144 725 NRIVSSVCILLTKDELVATLHSC--TTAICDR---TKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDK 799 (1141)
Q Consensus 725 ~~i~~~~~k~L~~~el~~li~tl--l~~L~d~---~~~~~~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~i~~~ 799 (1141)
...+..+...-.|.-.--++..+ ++...+. ........-.+|..++.+-|-++. . ..+++..+. +.+ ...
T Consensus 575 ~~~i~~~~~~~DprR~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~-~-~~~~l~~~~--l~h-~y~ 649 (997)
T 1vsy_5 575 STLAWWLPAVVDLRRSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAP-D-VGKLFDELV--FDH-PYD 649 (997)
T ss_dssp HHHHHHHHHHSCGGGCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSC-C-CHHHHHHCC--SCC-SCH
T ss_pred HHHHHHHhcCCChhhhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccc-c-HHHHHHHHH--hCC-ChH
Confidence 33444445555565555555544 4432122 222223456678888888887773 3 556666666 555 458
Q ss_pred HHHHHHHHHHHHhhhccc---chhhHHHHhhhhcccccccccccccCCCChhhHHHHhhcCcchHHHHHHHHHHHHccCC
Q 001144 800 HLRLETLGAISCLAENTN---SKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTP 876 (1141)
Q Consensus 800 ~~r~~~l~ai~lLa~~h~---~~Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~aLa~~~~l~~~vL~~LL~~L~~~p 876 (1141)
++|+.+-+.++.+..... -.=+. .|+.. +..+.. .-.+|... .++.....+..+.+.+....
T Consensus 650 ~VRe~Ig~~L~~i~~~~~~~~~~~~~-~~l~~-----~~~~~~--~~~~~~~~-------~~~~~~~~i~~~f~~l~~~~ 714 (997)
T 1vsy_5 650 QVRQAVAKLLTTLVQNQSNPSISDPT-TLLEA-----ERNDPD--GLGLPLKS-------VPEKVDAYIKKQFEIIKNLE 714 (997)
T ss_dssp HHHHHHHHHHHHHHHTSCCCCBSCHH-HHHHH-----HHSCSS--SSCCCSSC-------CCHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHHhhcccCCCCHH-HHHHh-----hccccc--cccCcccc-------CcchHHHHHHHHHHHHHHhh
Confidence 999999999988876652 11233 55511 111100 11222111 12222222333446655321
Q ss_pred CccCCCCCCCCCCCCCCcccchhhHHHHHHHHHHHHhcCCcchHHHHHHhhhHHHHHHHHHHhhhccCCCCCCCChhHHH
Q 001144 877 FVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAI 956 (1141)
Q Consensus 877 ~~~e~~~~~~~~~~~~~~~~~~~~plaAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~~a 956 (1141)
...+...++. ... ..+.-. +.-.++.+...-+......+..++|+.|+-+++.+.-.-+...-...++ ..+
T Consensus 715 ~~~~~~~~~~-~~~------s~y~~~-~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a-~~~ 785 (997)
T 1vsy_5 715 DSVVGLNPQQ-FIK------TDYFYR-TSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDP-VRL 785 (997)
T ss_dssp GTTSSCCSTT-TTT------SHHHHH-HHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCS-HHH
T ss_pred hcccccCccc-cch------HHHHHH-HHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHH-HHH
Confidence 1110000000 001 111111 1122223332222133344556666643333322211100000001111 111
Q ss_pred HHHHHHHHHhhCC-hhHHHHHHh----cCCCC--chhhhHhhHHHHHHHHhhcCChhHHHHHHHHHhhhcCCc-ccchhH
Q 001144 957 LTSFQAFCECVGD-LEMRKILAR----DGEQN--DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQ-RFQREA 1028 (1141)
Q Consensus 957 leAlk~lL~~~g~-~~~~~~le~----~g~W~--~~~~~~~GV~lLAram~~~~~~~~~~i~~~L~~~L~s~~-~~qRi~ 1028 (1141)
+..+....-..++ ..+.+.++. +..|. ..-+|.+-. .-|-+-.-...+...|++.+...|..++ -.=|..
T Consensus 786 l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW~R~~~L~~lq~~--~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~ 863 (997)
T 1vsy_5 786 YAGLGYMPIRKNHVAAIVDYVCSSNVALSSNQTKLQLAFIQHF--LSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVR 863 (997)
T ss_dssp HHHTSSSCCCHHHHHHHHHHSSCTTTTSCSSSHHHHHHHHHHH--HHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH--HHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHH
Confidence 2111100000000 111122221 12342 111222211 2233333355567899999999998888 777999
Q ss_pred HHHHHHHhhhcc-CCccchHHHHHHHHhhhcCC------------CCchhhhhhccccCCccch---h--hhhhHHHHHH
Q 001144 1029 AAAALSEFVRYS-GGFDSLLEQMVEALCRHVSD------------ESPTVRGLCLRGLVQIPSI---H--IHQYATQVLS 1090 (1141)
Q Consensus 1029 a~af~sELL~~~-~~~~~l~~~~l~~L~~~l~D------------~~~~VR~lslrGLgnl~~~---k--v~~~~~~lL~ 1090 (1141)
|+..++-+++|. . .. ..++++..+.+++.. .+-..|.-++-|||-+... . +-.+.|.+|.
T Consensus 864 Aa~tLsgll~c~~~-~~-~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~ 941 (997)
T 1vsy_5 864 AASILSDIVHNWKE-EQ-PLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLS 941 (997)
T ss_dssp HHHHHHHHHHSCCS-HH-HHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHH
T ss_pred HHHHHHHHHHcCCc-hh-hHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHH
Confidence 999999999987 4 11 234566677776633 1125667778888866332 3 3678888887
Q ss_pred HHHhhccCCChhHHHHHHHHHHH
Q 001144 1091 VILALLDDLDESVQLTAVSCLLT 1113 (1141)
Q Consensus 1091 all~~l~d~~~~vvleam~~L~~ 1113 (1141)
.+-+-..|+ +.|-..+=.+|++
T Consensus 942 ~La~~~~~~-~~i~~tvk~tlse 963 (997)
T 1vsy_5 942 NLSSWARTS-GMTGNAAKNTISE 963 (997)
T ss_dssp HHHTTSSSC-SSHHHHTHHHHHH
T ss_pred HHHHHhCCC-CchHHHHHHHHHH
Confidence 776666652 2343333444444
No 109
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=22.38 E-value=96 Score=30.04 Aligned_cols=65 Identities=18% Similarity=0.365 Sum_probs=49.8
Q ss_pred hhhhhcccccchhHHHHHHHhhhcCCCchhhh---cchHHHHHHHHHhhhhccHHHHHHHHHHHHHHhh
Q 001144 3 LLNKCRLKEEHLSVGALYVLKHLLPRSSEAWH---SKRPLLLEAVKSLLDEQNLAVQKAISELIVVMAS 68 (1141)
Q Consensus 3 ll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~---~k~~~i~~~vk~~l~d~~~kVr~al~~~I~ama~ 68 (1141)
+..||..+|...-+-||.+|-.++..+++... .++.++ ..++.++..++.+||.-++++|.+.+.
T Consensus 47 i~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl-~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 47 IMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFA-SEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHH-HHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHH-HHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 45678888888999999999999998887654 234444 334455567889999999999998775
No 110
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=22.21 E-value=1.4e+02 Score=37.40 Aligned_cols=124 Identities=13% Similarity=0.085 Sum_probs=82.2
Q ss_pred hhCChHHHHHHHH----HHHHhccCCCchhHHHHHHHHHHHHHhhccccchhhHhHHHHHHHHHhhh--cCcHHHHHHHH
Q 001144 733 ILLTKDELVATLH----SCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVH--ITDKHLRLETL 806 (1141)
Q Consensus 733 k~L~~~el~~li~----tll~~L~d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~eIv~~i~~~L~~--i~~~~~r~~~l 806 (1141)
.+|++++...||. .++.|+-+.+...+.-+...|..+---+-....-- +|.+++.+|..|.. +++++--.+++
T Consensus 326 ~~Lt~~~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lV-lP~vL~r~y~sLe~~~l~e~Hrl~~aL 404 (799)
T 1vsy_4 326 ICLTSFCHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLI-YDKILIDLYDTLADQFINSRHRIISSL 404 (799)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHH-HHHHHHHHHHHHTTTTTTCHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCcccee-hHHHHHHHHHHhccccccchhHHHHHH
Confidence 3567777777776 45678888877777777778887776443111112 99999999999999 99999888999
Q ss_pred HHHHHhhhc------ccchhhHHHHhhhhcccccccccccccCCCChhhHHHHhhcCcchHHHHHHHHHHHHccCCCcc
Q 001144 807 GAISCLAEN------TNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVK 879 (1141)
Q Consensus 807 ~ai~lLa~~------h~~~Vv~~~LL~~~~~~~~~~d~~~~~~plP~d~~W~aLa~~~~l~~~vL~~LL~~L~~~p~~~ 879 (1141)
+++..+++- ++.-++ .||..+ +|=-+ ++|+.-+..++..+......-|...
T Consensus 405 ~~l~~~~r~lv~~~~yr~hl~--~lL~l~---------------LpgID-----~ND~~KT~~tl~fi~~i~s~ipi~d 461 (799)
T 1vsy_4 405 KQFTRVIRFIVMDKLYRVHIT--NVLSML---------------VSKLD-----MNDTNLTSNLINGIVSIAAFIPIQD 461 (799)
T ss_dssp HHHHTTHHHHTTSTTGGGHHH--HHHHHH---------------HHTCC-----SSCHHHHHHHHHHHHHHHHTSCBCC
T ss_pred HHHHHHHHHHhcCcccHHHHH--HHHHHH---------------hccCC-----cccHHHHHHHHHHHHHHHHhccccc
Confidence 998877732 112222 333111 11011 5677777778888877777666553
No 111
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=21.13 E-value=4.7e+02 Score=25.55 Aligned_cols=96 Identities=13% Similarity=0.109 Sum_probs=57.7
Q ss_pred CCChhHHHHHHHHHHhhCChHHHHHHHHHHHHhcc-CCCchhHHHHHHHHHHHHHhhccccchhhHhH--HHHH-HHHHh
Q 001144 718 IDPSEVFNRIVSSVCILLTKDELVATLHSCTTAIC-DRTKQSAEGAIQAVVEFVTKRGNELSETDVSR--TTQS-LLSAA 793 (1141)
Q Consensus 718 ~~~~~~~~~i~~~~~k~L~~~el~~li~tll~~L~-d~~~~~~~~A~~~L~~~l~~~g~~l~e~dV~e--Iv~~-i~~~L 793 (1141)
.+|-..+-.||..|... +..-.+.+..+...|. ..+.+...-|-.+|..+++..|..+..+ |+. .++. +..-+
T Consensus 31 ~~Dw~~~leicD~I~~~--~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~e-va~~~fl~e~Lvk~~ 107 (157)
T 1elk_A 31 SEDWALNMEICDIINET--EEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVL-VASQDFVESVLVRTI 107 (157)
T ss_dssp SCCHHHHHHHHHHHHHS--SSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHH-HTSHHHHHHHTHHHH
T ss_pred CcCHHHHHHHHHHHhCC--CccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHH-HhhHHHHHHHHHHHh
Confidence 34444445566655432 2333455556666665 4566777888889999999999999444 763 4454 33323
Q ss_pred h--hcCcHHHHHHHHHHHHHhhhcc
Q 001144 794 V--HITDKHLRLETLGAISCLAENT 816 (1141)
Q Consensus 794 ~--~i~~~~~r~~~l~ai~lLa~~h 816 (1141)
. ......+|+.++..|...+...
T Consensus 108 ~~k~~~~~~Vk~kil~li~~W~~~f 132 (157)
T 1elk_A 108 LPKNNPPTIVHDKVLNLIQSWADAF 132 (157)
T ss_dssp STTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHHHHHHc
Confidence 1 1234567777777776666543
No 112
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=20.20 E-value=4.8e+02 Score=27.82 Aligned_cols=116 Identities=12% Similarity=0.116 Sum_probs=81.0
Q ss_pred hcCChhHHHHHHHHHhhhcCCcccchhHHHHHHHHhhhccCCccchHHHHHHHHhhhcCCCCchhhhhhccccCCccch-
Q 001144 1001 IKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI- 1079 (1141)
Q Consensus 1001 ~~~~~~~~~i~~~L~~~L~s~~~~qRi~a~af~sELL~~~~~~~~l~~~~l~~L~~~l~D~~~~VR~lslrGLgnl~~~- 1079 (1141)
..++...+.++..++++...+.-.=|.-.+.|+.|..... ..+.-..+..|..-++|+++.|-+-+++..+++-..
T Consensus 45 ~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k---~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~ 121 (257)
T 3gs3_A 45 GSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK---VELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNG 121 (257)
T ss_dssp TTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3466789999999999876655556777777887765432 245666888888888899999998888888876321
Q ss_pred --------hh-------hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHHhccCC
Q 001144 1080 --------HI-------HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSS 1119 (1141)
Q Consensus 1080 --------kv-------~~~~~~lL~all~~l~d~~~~vvleam~~L~~lL~~l~ 1119 (1141)
.+ =.....+=+.+++-++..++.|-+.++.=+.+++...+
T Consensus 122 l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT 176 (257)
T 3gs3_A 122 LQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQS 176 (257)
T ss_dssp HHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhc
Confidence 10 00112334456666776788888999999998885554
No 113
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=20.06 E-value=1.1e+02 Score=30.73 Aligned_cols=66 Identities=23% Similarity=0.280 Sum_probs=50.9
Q ss_pred hhhhhcccccchhHHHHHHHhhhcCCCchhhh---cchHHHHHHHHHhhh------hccHHHHHHHHHHHHHHhhc
Q 001144 3 LLNKCRLKEEHLSVGALYVLKHLLPRSSEAWH---SKRPLLLEAVKSLLD------EQNLAVQKAISELIVVMASH 69 (1141)
Q Consensus 3 ll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~---~k~~~i~~~vk~~l~------d~~~kVr~al~~~I~ama~~ 69 (1141)
|..||.++|.....-||.+|-.++..+++... .++.++-+.+| ++. ..+.+||..++++|.+-+..
T Consensus 55 l~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~k-l~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 55 LAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIK-VVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHH-HHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHH-HhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999998887653 24445555444 443 35689999999999987754
Done!