BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001145
(1141 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii
Effector Xcv3220 (Xopl)
Length = 328
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 72/148 (48%), Gaps = 9/148 (6%)
Query: 960 VLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIAL-EHLTIMYCPSLAF-------LPE 1011
LP I L LR LSI C L +P L A EH ++ SL LP
Sbjct: 141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA 200
Query: 1012 NFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLT 1071
+ NL LKSL I + P L++L + H+ L+ L++ C A ++ P G + L L
Sbjct: 201 SIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259
Query: 1072 ISDCHTIISLPANLQHLTTLQHLSIREC 1099
+ DC +++LP ++ LT L+ L +R C
Sbjct: 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGC 287
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 86/196 (43%), Gaps = 19/196 (9%)
Query: 899 LTSLTISSCPNLRSISSKLGCLVALKSLTIRWCQELIALPQEIQNXXXXXXXXXXXXXXX 958
L +LT++ P LR++ + + L L+ L+IR C EL LP+ + +
Sbjct: 129 LETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 959 --------TVLPEGIEGLTSLRSLSIENCENLAYIPRGLGHLIALEHLTIMYCPSLAFLP 1010
LP I L +L+SL I N A P + HL LE L + C +L P
Sbjct: 188 LRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYP 246
Query: 1011 ENFRNLTMLKSLCILSCPELASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSL 1070
F LK L + C L +LP ++ +T L+ L++ C LP I L
Sbjct: 247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP----- 301
Query: 1071 TISDCHTIISLPANLQ 1086
++C II +P +LQ
Sbjct: 302 --ANC--IILVPPHLQ 313
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 33/169 (19%)
Query: 498 VVCDSDLQTIPESLYEAKKLRTLNLLFSKGDLGEAPPKLFSS--------FRYLRTLNLS 549
+ + L+ +P S+ +LR L++ +L E P L S+ L++L L
Sbjct: 133 TLARNPLRALPASIASLNRLRELSIRACP-ELTELPEPLASTDASGEHQGLVNLQSLRLE 191
Query: 550 GSGIKKLHSSISCLISLRYLNMSNTLIERLPESICDLVYLQVLNL--------------- 594
+GI+ L +SI+ L +L+ L + N+ + L +I L L+ L+L
Sbjct: 192 WTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251
Query: 595 ---------SDCHDLIELPKRLASIFQLRHLMIYGCCRLSQFPDHIGRL 634
DC +L+ LP + + QL L + GC LS+ P I +L
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 12/140 (8%)
Query: 539 SFR--YLRTLNLSGSGIKKLHSSISCLISLRYLNMSNTLIERLPESICDLVYLQVLNLSD 596
+FR +L+ + +G+ +L + L L ++ + LP SI L L+ L++
Sbjct: 100 AFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159
Query: 597 CHDLIELPKRLASI---FQLRHLMIYGCCRLS-----QFPDHIGRLIQLQTLPVFIVGTE 648
C +L ELP+ LAS + + L+ RL P I L L++L I +
Sbjct: 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL--KIRNSP 217
Query: 649 ISQGLKQLHSLPLAGELNIR 668
+S +H LP EL++R
Sbjct: 218 LSALGPAIHHLPKLEELDLR 237
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 1030 LASLPDELQHVTTLQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQHLT 1089
L PD+ ++ LQ I + +LP+ + L +LT++ + + +LPA++ L
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAA-GLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLN 150
Query: 1090 TLQHLSIRECPRL 1102
L+ LSIR CP L
Sbjct: 151 RLRELSIRACPEL 163
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 95/198 (47%), Gaps = 22/198 (11%)
Query: 889 FERLLENNPCLTSLT-ISSCPNLRSIS---SKLGCLVALKSLT-----IRWCQELIALPQ 939
++++ NN + S+ I PN+R ++ +KL + ALK LT I +L +LP
Sbjct: 43 IDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPN 102
Query: 940 EIQNXXXXXXXXXXXXXXXTVLPEGI-EGLTSLRSLSIENCENLAYIPRGL-GHLIALEH 997
+ + LP+G+ + LT+L L++ + + L +P+G+ L L
Sbjct: 103 GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTE 161
Query: 998 LTIMYCPSLAFLPEN-FRNLTMLKSLCILSCPELASLPDEL-QHVTTLQSLEIH------ 1049
L + Y L LPE F LT LK L + +L S+PD + +T+LQ + +H
Sbjct: 162 LDLSYN-QLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDC 219
Query: 1050 SCPAFKDLPEWIGNLSSL 1067
+CP + L EWI S +
Sbjct: 220 TCPGIRYLSEWINKHSGV 237
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Query: 515 KKLRTLNLLFSKGD-LGEAPPKLFSSFRYLRTLNLSGSGIKKLHSSI-SCLISLRYLNMS 572
K+L L L G+ L P +F L+ L L + ++ L + L +L YLN++
Sbjct: 82 KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA 141
Query: 573 NTLIERLPESICD-LVYLQVLNLSDCHDLIELPKRL-ASIFQLRHLMIYGCCRLSQFPDH 630
+ ++ LP+ + D L L L+LS + L LP+ + + QL+ L +Y +L PD
Sbjct: 142 HNQLQSLPKGVFDKLTNLTELDLS-YNQLQSLPEGVFDKLTQLKDLRLYQ-NQLKSVPDG 199
Query: 631 I-GRLIQLQ 638
+ RL LQ
Sbjct: 200 VFDRLTSLQ 208
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 568 YLNMSNTLIERLPESICDLVYLQVLNLSDCHDLIELPKRLASIFQLRHLMIYGCCRLSQF 627
YLN N+L E LP I +L L+VL+LS + L LP L S FQL++ + ++
Sbjct: 253 YLN-GNSLTE-LPAEIKNLSNLRVLDLSH-NRLTSLPAELGSCFQLKYFYFFDNM-VTTL 308
Query: 628 PDHIGRLIQLQTLPV 642
P G L LQ L V
Sbjct: 309 PWEFGNLCNLQFLGV 323
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 518 RTLNLLFSKGDLGEAPPKLFSSFRYLRTLNLSGSGIKKLHSSI-SCLISLRYLNMSNTLI 576
+T L L P +F L L L G+ ++ L + + + L SL YLN+S +
Sbjct: 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88
Query: 577 ERLPESICD-LVYLQVLNLSDCHDLIELPKRL-ASIFQLRHLMIYGCCRLSQFPDHI-GR 633
+ LP + D L L+ L L + + L LP + + QL+ L +Y +L PD + R
Sbjct: 89 QSLPNGVFDKLTQLKELAL-NTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDR 146
Query: 634 LIQLQ 638
L LQ
Sbjct: 147 LTSLQ 151
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 13/111 (11%)
Query: 961 LPEGI-EGLTSLRSLSIENCENLAYIPRGL-GHLIALEHLTIMYCPSLAFLPEN-FRNLT 1017
LP G+ LTSL L++ L +P G+ L L+ L + L LP+ F LT
Sbjct: 67 LPNGVFNKLTSLTYLNLST-NQLQSLPNGVFDKLTQLKELA-LNTNQLQSLPDGVFDKLT 124
Query: 1018 MLKSLCILSCPELASLPDEL-QHVTTLQSLEIH------SCPAFKDLPEWI 1061
LK L + +L S+PD + +T+LQ + +H +CP + L EWI
Sbjct: 125 QLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWI 174
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 27/151 (17%)
Query: 543 LRTLNLSGSGIKKLHSSISCLISLRYLNMSNTLIERLPESICDLVYLQVLNLSDCHDLIE 602
L++L + + +K L S + L L YL +SN +E+LPE + + +L+++++ D + L +
Sbjct: 113 LKSLLVDNNNLKAL-SDLPPL--LEYLGVSNNQLEKLPE-LQNSSFLKIIDV-DNNSLKK 167
Query: 603 LPKRLASIFQLRHLMIYGCCRLSQFPDHIGRLIQLQTLPVFIVGTEISQGLKQLHSLPLA 662
LP S+ + G +L + P +LQ LP + LK+L LPL+
Sbjct: 168 LPDLPPSL----EFIAAGNNQLEELP-------ELQNLPFLTAIYADNNSLKKLPDLPLS 216
Query: 663 GELNIRKLENVKSGSDAAFASLRRKPKLHSL 693
LE++ +G++ L P+L +L
Sbjct: 217 -------LESIVAGNNI----LEELPELQNL 236
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 71/196 (36%), Gaps = 58/196 (29%)
Query: 589 LQVLNLSDCHDLIELPKRLASIFQLRHLMIYGCCRLSQFPDHIGRLI----QLQTLPVFI 644
+ V L DC D R A +L +L G L + P H+ L+ L LP
Sbjct: 60 MAVSRLRDCLD------RQAHELELNNL---GLSSLPELPPHLESLVASCNSLTELP--- 107
Query: 645 VGTEISQGLKQLHSLPLAGELNIRKLENVKSGSDAAFASLRRKPKLHSLGLSWRNNHDAL 704
E+ Q LK L + N+K+ SD P L LG+S
Sbjct: 108 ---ELPQSLKSL----------LVDNNNLKALSDLP-------PLLEYLGVS-------- 139
Query: 705 MKETDDRNRQAEEVLDSLQPHQNLKRLSVEGYSGDRFPTWIGFPGLPNLTNIVLINCKRC 764
N Q E+ L LQ LK + V+ S + P LP + +
Sbjct: 140 -------NNQLEK-LPELQNSSFLKIIDVDNNSLKKLP------DLPPSLEFIAAGNNQL 185
Query: 765 ENLPALGQLPFLRVIY 780
E LP L LPFL IY
Sbjct: 186 EELPELQNLPFLTAIY 201
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 963 EGIEGLTSLRSLSIENCENLAYIP-RGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKS 1021
GL SL L++E C NL IP L HL L L + + A +F+ L LK
Sbjct: 146 RAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV 204
Query: 1022 LCILSCPELASLPDELQHVTTLQSLEIHSC 1051
L I P L ++ + L SL I C
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHC 234
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 488 RHLAQTRHSSVVCDSDLQTIPES-LYEAKKLRTLNLLFSKGDLGEAPPKLFSSFRYLRTL 546
RHL R ++ + + TI S L+E +L+ + L+ G L P F YLR L
Sbjct: 245 RHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLV--GGQLAVVEPYAFRGLNYLRVL 301
Query: 547 NLSGSGIKKLHSSI 560
N+SG+ + L S+
Sbjct: 302 NVSGNQLTTLEESV 315
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 534 PKLFSSFRYLRTLNLSGSGIKKLHSSI-SCLISLRYLNMSNTLIERLPESICD-LVYLQV 591
P +F S L+ L L + + L + L L L++ + LP ++ D LV+L+
Sbjct: 57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE 116
Query: 592 LNLSDCHDLIELPKRLASIFQLRHLMI 618
L + C+ L ELP+ + + L HL +
Sbjct: 117 LFMC-CNKLTELPRGIERLTHLTHLAL 142
>pdb|3ONM|A Chain A, Effector Binding Domain Of Lysr-Type Transcription Factor
Rovm From Y. Pseudotuberculosis
pdb|3ONM|B Chain B, Effector Binding Domain Of Lysr-Type Transcription Factor
Rovm From Y. Pseudotuberculosis
Length = 238
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 746 GFPGLPNLTNIVLINCKRCENLPALGQLPFLRVIYMHGMHSVKSI 790
G PGLP T VL K+C+N AL L+ Y H M S S+
Sbjct: 183 GLPGLPE-TRYVLCKDKQCDNELALAIFSALQNSYQHTMSSESSL 226
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 47/109 (43%)
Query: 983 AYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTT 1042
IP LG L L L + +P+ + L++L + +P L + T
Sbjct: 429 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 488
Query: 1043 LQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQHLTTL 1091
L + + + ++P+WIG L +L L +S+ ++PA L +L
Sbjct: 489 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 537
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 47/109 (43%)
Query: 983 AYIPRGLGHLIALEHLTIMYCPSLAFLPENFRNLTMLKSLCILSCPELASLPDELQHVTT 1042
IP LG L L L + +P+ + L++L + +P L + T
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491
Query: 1043 LQSLEIHSCPAFKDLPEWIGNLSSLTSLTISDCHTIISLPANLQHLTTL 1091
L + + + ++P+WIG L +L L +S+ ++PA L +L
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,156,528
Number of Sequences: 62578
Number of extensions: 1308863
Number of successful extensions: 2843
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2795
Number of HSP's gapped (non-prelim): 48
length of query: 1141
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1032
effective length of database: 8,152,335
effective search space: 8413209720
effective search space used: 8413209720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)